LOCUS       DASWTX010000001         4613 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_346634, whole genome shotgun sequence.
ACCESSION   DASWTX010000001 DASWTX010000000
VERSION     DASWTX010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4613)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4613)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4613
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346634"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..252)
                     /locus_tag="VGD38_00005"
     CDS             complement(<1..252)
                     /locus_tag="VGD38_00005"
                     /inference="COORDINATES: protein motif:HMM:NF003817.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HEY0726418.1"
                     /translation="MAETIKCTHCGQKRTALAFAPFPNELGQKIAAEICQPCWMEWLQ
                     KQTQIINHYGLDLTNPDAQNFLFDNIKGYLFGETPNLAEI"
     gene            complement(245..724)
                     /locus_tag="VGD38_00010"
     CDS             complement(245..724)
                     /locus_tag="VGD38_00010"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEY0726419.1"
                     /translation="MSNKLNLNEPAPDFTLKDGSGNDWRLADHRGKVVVLLFYPGDET
                     PVCTRQMCSVRDRWEDYQATGAEVVGISTDSVESHRKFAEHHGLPLRLLSDAGGKVSA
                     LYAAKSIIPGRTARSVFVIDADGKLRYQDVRPVGLLKPKDDVIISAIRHAQGGNHHG"
     gene            complement(721..1866)
                     /locus_tag="VGD38_00015"
     CDS             complement(721..1866)
                     /locus_tag="VGD38_00015"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY0726420.1"
                     /translation="MSFERHRDQFPTLASGIHLLSHSLGPVPRAVRESMLEYCDAWEH
                     HTSEDAWATSWWELSRRVGDRIARILGGAPASVQIEPNASIALATVASCFQFQSGRRN
                     KVVTTALDFPSMEYIWEAQRQVGARVEVVKSPDGISVPLEKILDAIDDETCLVALAHV
                     SYRSSYRVDAPAIVERAHAKGALVLLDVYQSAGVVPLHAADWKVDFLIGGTIKWLCGG
                     PSCGYLYVRPEIQKDLRPRLTGWVAHDAPFEFASAPMRYARSVRRFAQGTPSIPALYS
                     AIPGMDIIESVGLEQIAAESQRRTQLMIDFARDRRWTINTPLEQDRRGGSVMIGVEDA
                     KSIAEQLAERRVFVDWRPGAGLRVSPHFFNTDEEVEEALKTLAGLIE"
     gene            complement(1863..2588)
                     /locus_tag="VGD38_00020"
     CDS             complement(1863..2588)
                     /locus_tag="VGD38_00020"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY0726421.1"
                     /translation="MQIEGKRILISGAGRGLGRTLVGAFVDAGASEVFAGTRNQDASD
                     ALKREFPERVTPIQLDVTSDSDVDALSQLGTIDILLNNAGIAGFGSPLTMSFHAVENE
                     IAVNYLGVLRLTRAVAPGMIAQREGMIVNIATAFAKVNLPLVGTYCATKAALLSLGQA
                     LRAHLADDGVRVITVMPTTFDSDMSRGADVPKMTKEYVAAEILAAIREERHDPPIGSE
                     AEGIFETLMKDPIAVEKNLMNYR"
     gene            complement(2578..3978)
                     /locus_tag="VGD38_00025"
     CDS             complement(2578..3978)
                     /locus_tag="VGD38_00025"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEY0726422.1"
                     /translation="MDQPVSKLRRDLGTLESYATLIGILIGAGIFQVTSQAWALSGPS
                     VILGYIVLTPAILATAIPYAAYLSTPLGREPGGEYLHISRTLGGYRLAYVGSWLKIIS
                     YIGAGAYLANAMAGYLIALSGGRLERFQLPLALAALVVFYLIHVIGIRWFGRFQVTMS
                     ALKCLALLVLIVPGLFLLRYENYTPFFTHGWTGFGASLLPLFFAYAGFESIAQTAGEV
                     KDSTRRLPRILVKGITITALFYVFTSIVSFGVLPGGRLQASSAPMAEVASSYLPAGAA
                     IFVTIGAIAAIMTALNGTLFVPSRLAIIFVKDGLAPRWLGVINEKTATPIRGLTLTLL
                     CCAILLVSGQLSLALNVAVFALVVLYFIHSLVFLFLPRWNRALAGEIDINLSLRWRQV
                     AAIVSIVSMGVMILIQLRQDVEVLRTSSLSQRIDEHSLTSIELVLVWGLVGLVLYQLA
                     RMQRRKAVTKADANAD"
     gene            complement(3984..4517)
                     /locus_tag="VGD38_00030"
     CDS             complement(3984..4517)
                     /locus_tag="VGD38_00030"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030638 - polyketide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HEY0726423.1"
                     /translation="MTIPENERTDLARVFDDHVAAEFVDMDLDATMATMTEDPYVNHV
                     PVMTGGVGFEGVRRFYGDHFIGKWPRDIAITAVSRTVGESQVVDELILSFTHDIEMPQ
                     LLPGIAPSGKPVQLAFCVVVGFEDGKVAHEHIYWDQASVLAQLGLIDSTKLPVAGVES
                     AEKVLNPKLPSNTLMNL"
BASE COUNT          970 a         1423 c         1328 g          892 t
ORIGIN      
        1 gatctcggcg aggttgggtg tctcaccgaa caggtatcct ttgatgttgt cgaagaggaa
       61 attctgcgca tcggggttcg tgaggtcgag gccgtagtga ttgatgatct gtgtctgttt
      121 ttgcagccac tccatccagc acggctgaca aatctccgcg gcaatctttt gtccgagttc
      181 attcgggaac ggcgcaaacg cgagcgccgt gcgcttctgg ccgcagtgtg tgcatttgat
      241 ggtttcagcc atgatgattt cctccttgtg cgtgacggat cgcggaaatt ataacgtcat
      301 ccttcggctt cagcagcccc accgggcgca cgtcctgata acgcagcttt ccatccgcgt
      361 cgatcacaaa aaccgaacgc gccgtgcggc ccggaattat cgacttcgca gcatacagcg
      421 ccgagacttt tccacccgca tccgaaagca aacgcaacgg cagtccgtga tgctcggcaa
      481 acttgcgatg cgactcaacc gagtcagtcg aaatgccgac gacttccgcg cccgtggcct
      541 gatagtcttc ccaacgatcc cgcaccgaac acatctgccg cgtgcaaacc ggcgtttcgt
      601 cacccggata aaacagcagc acgacaacct tgccgcgatg atccgcgagg cgccaatcgt
      661 ttccgcttcc atccttcaac gtgaaatcgg gcgcgggttc gttaaggttt agtttgttgc
      721 tcattcgatt agaccagcga gagttttgag cgcttcttcg acttcttcat cagtgttgaa
      781 gaagtgcggc gagacgcgca agccggcgcc gggacgccaa tcgacaaaca cgcgccgctc
      841 ggcgagctgt tcggcgatcg acttggcgtc ttcaacaccg atcatcaccg agccgccgcg
      901 tctgtcttgt tcgagcggcg tgttgatggt ccaacgccgg tcgcgcgcga agtcgatcat
      961 caactgtgtg cggcgctgtg attcagccgc gatctgttcg agcccgacag actcgataat
     1021 atccattccg gggatggccg aatacagcgc cggaatactc ggcgtgccct gcgcaaaccg
     1081 gcgcaccgaa cgcgcgtaac gcatcggcgc cgaagcaaat tcaaacggcg cgtcgtgcgc
     1141 gacccagccg gttaaccgtg gacgcaaatc tttttgaatc tcgggacgca cgtacaagta
     1201 accacacgat ggaccaccgc acaaccactt gatcgtgcca ccgatcagga aatcaacttt
     1261 ccaatcagcc gcatgcaacg gcaccacgcc ggccgactgg taaacgtcga gcaacaccag
     1321 cgcgcctttc gcgtgcgctc gctcgacaat cgccggcgca tcgacgcgat acgaactgcg
     1381 atacgaaacg tgggccagtg ccacgagaca cgtctcgtcg tcaatcgcgt cgaggatctt
     1441 ttcgagcggc acggaaatgc cgtcgggcga cttcacgact tcaacgcgcg cgccgacctg
     1501 tcgctgcgct tcccagatat attccataga cggaaagtcg agcgcagttg tgacaacctt
     1561 gtttcggcgt ccgctttgaa actgaaaaca cgaagcgacc gttgcgagcg cgatcgaagc
     1621 gttcggttcg atctgcaccg aagcgggcgc gccgccgaga atgcgcgcga tgcgatcgcc
     1681 gacgcggcgc gacagttccc accagctcgt ggcccacgcg tcttcgctcg tgtgatgttc
     1741 ccacgcgtcg cagtattcga gcatcgactc gcgcacggcg cgcggcaccg gcccgaggct
     1801 gtgactgagc agatgaatgc ccgaagccaa ggttgggaac tgatctctgt gtcgctcgaa
     1861 gctcatctgt agttcatcaa attcttttcc accgcgatgg ggtctttcat caacgtttcg
     1921 aaaatcccct ccgcttcgct tccgatcggc ggatcgtgcc gctcctcgcg aatcgcggcg
     1981 agtatctcgg cggcgacgta ttctttcgtc atcttcggaa cgtctgcgcc acggctcatg
     2041 tccgagtcaa acgtcgtcgg catgaccgtg atcacgcgga cgccgtcgtc cgcgaggtgc
     2101 gcgcgtagtg cctggcccag cgacaacaag gcagctttcg tcgcgcaata agttccgacc
     2161 agcggcagat tcactttcgc gaacgcagtc gcaatgttga cgatcattcc ctcgcgctgc
     2221 gcgatcatcc cgggcgcaac cgcgcgcgtc agacgcaaca cgccgagata gttcactgca
     2281 atctcgttct caacggcgtg gaaactcatc gtcagcggac ttccgaaacc cgcaatgccg
     2341 gcgttgttca aaaggatatc gattgttccg agctgcgaga gcgcgtcgac atcggaatcg
     2401 ctggtcacat cgagttgaat tggtgtaacg cgctctggaa attcgcgctt taacgcatcg
     2461 ctcgcgtcct ggtttcgcgt gccggcaaac acttcactcg cgcccgcgtc gacaaacgcg
     2521 ccgacgagcg ttcggccgag accgcgcccg gcgccgctaa tcaagatgcg tttgccttca
     2581 atctgcattt gcgtctgctt tcgtcacggc tttgcgccgc tgcatccttg cgagttgata
     2641 aagcaccagc ccgacgagtc cccaaacaag caccagctca atgctcgtca acgagtgctc
     2701 gtcgatgcgt tgactaagac tcgacgtgcg caagacttca acgtcttgcc gcagttgaat
     2761 caagatcatt acacccatcg aaacaatcga gacgatggcc gcgacctgtc gccaacgcaa
     2821 cgacaagttg atgtcgatct cgccggccaa ggcgcgattc cagcggggga ggaacagaaa
     2881 taccaggcta tgaatgaaat aaagcacgac cagtgcgaac actgcaacat ttaatgcgag
     2941 cgaaagctgt ccgctcacca acaaaatcgc acaacacagc agtgtcaacg tcaaaccgcg
     3001 tatcggcgtg gcggtctttt cgttgatgac gccgagccag cgcggtgcga gtccatcctt
     3061 tacaaaaatg atcgcgagac gcgacggcac gaacaacgtt ccgttcagtg cggtcatgat
     3121 cgcggcgatc gcgccgatcg tgacgaagat cgctgcgcct gccggtaagt agctcgacgc
     3181 cacttccgcc atcggtgcgc tgctcgcttg cagccgcccg cccggcaaca cgccgaacga
     3241 aacgatcgaa gtgaagacgt agaagagcgc cgtgatcgtg atgcctttta cgagtattcg
     3301 cggcagacga cgcgtgctgt cttttacttc gcctgccgtt tgtgcgattg actcgaaacc
     3361 cgcgtatgca aaaaacagcg gcagcagact cgcgccgaag ccggtccagc cgtgcgtgaa
     3421 gaacggtgtg tagttttcgt acctcagcaa aaacagaccg ggaacgatca ggacaagcaa
     3481 cgccaaacac ttcaacgccg acatcgtcac ttgaaagcgg ccgaaccagc gtatgccgat
     3541 tacgtgaatc agatagaaga cgacgagtgc cgccaaggcg agcggcagtt gaaatcgctc
     3601 gaggcggccg ccgctcagcg cgatcaggta accggccatc gcgtttgcga gatacgcgcc
     3661 cgcgccgatg tacgaaatga tcttgagcca cgagccgacg tacgcgagac gatacccgcc
     3721 aagcgtgcgc gagatgtgca ggtactcgcc gccgggttcg cggccgagtg gtgttgagag
     3781 atacgcggcg taagggatcg cggtggcgag gatcgcgggc gtgagaacga tgtagccaag
     3841 aatcacgctc ggcccgctca gcgcccacgc ctggctcgtg acctgaaaaa tccccgcgcc
     3901 gataagaatt ccaatcagcg tcgcgtagga ttccagcgtc ccgaggtcgc ggcggagctt
     3961 acttaccggt tggtccacag atttcacaga ttcatcaacg tgttcgacgg caacttggga
     4021 ttcagaactt tctcggcgct ctcgacgccc gcgacaggaa gtttcgtgga gtcgatcagg
     4081 ccgagttggg ccagcacgga ggcctggtcc cagtagatgt gctcgtgcgc gaccttcccg
     4141 tcctcgaagc cgacgacgac gcagaacgcg agctggaccg gcttcccgct gggcgcgatc
     4201 cccggcagca gctggggcat ctcgatgtcg tgggtgaagg acaggatgag ctcgtcgacg
     4261 acctggctct cgccgaccgt gcgcgagacc gccgtgatcg cgatgtcccg cggccacttg
     4321 ccgatgaagt gatccccgta gaaccggcgc acgccctcga agccgacgcc accggtcatg
     4381 acggggacgt ggttgacgta cgggtcctcg gtcatcgtcg ccatcgtcgc gtcgagatcc
     4441 atgtccacga actcggcggc gacgtggtcg tcgaagacgc gcgcgagatc cgtgcgctcg
     4501 ttctccggga tcgtcatgga ctcggaaccg agcgcgtttc gttctcgctt gacatgtcag
     4561 gcgggggacg gattgaatct ccgcatgctc ctccgcgagg tcgagtacgt gcg
//
LOCUS       DASWTX010000002         3305 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_368350, whole genome shotgun sequence.
ACCESSION   DASWTX010000002 DASWTX010000000
VERSION     DASWTX010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3305
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368350"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(309..>3305)
                     /locus_tag="VGD38_00035"
     CDS             complement(309..>3305)
                     /locus_tag="VGD38_00035"
                     /inference="COORDINATES: protein motif:HMM:NF013395.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HEY0726424.1"
                     /translation="GNSGATFTNDYIEIYNPTGISFNLAGWSLQYASATGTSWTNKQP
                     LGGTIAPGEYFLVELASGGANGAPLSVLPNISGDINMSATTGKIALVSNSISLSGSCP
                     NGVDPDIVDFVGYGTSASCFDGGARAPAPSNTSAVFRKLNGAQDTNQNGNDFQTATPN
                     PRRTAPIVELGPWVAGTDPISDGFNAPYDATVTVDFSEPVDVTGAWFDITCTVSGSHN
                     NATVASFNSSKGYHITPNSGFQFGEQCTVTIVHTNVHDQDFDDAGPNTDTLFADHVWT
                     FTVVAAGAPAPHPASVHLALGNPSNAVVDLTQPNNYLMEKPSFSLSYNRDKGTPNWVS
                     WHLENGWTGSLPRTDTFRADPAVSPDWYRVQSTDYFASGFDRGHMTPNADRDNPASIP
                     LNQETFLMSNMVPQAPNNNQGPWADLENFLRTLLGPNEVYVVAGPAGVGGSGDNGPAN
                     TIANGHVTVPAFTWKVALVLPVGDGDVSRVSAATRTIAVIMPNDNSINSDWHAYLTTV
                     DAVETLTGYDFFANVPDAIENSIEAGVDGNNPPGTENQAATTDEDVPVGITLNAVSPN
                     LSATFSYTIVSGPANGVLSGDGPVFTYTPAANFHGADSFTFRVNDGSNNSNTSTVSVT
                     VNPVNDVPVADSQSVTTNSNTPVSITLTGNDFETAAANLMFEVSVNPAHGTLSGSGAN
                     LTYTPNPNFAGSDSFTFTVRDTGDDSAAPITSAEAVVTITVNDTVAPTISAPANVTAN
                     TGADATSCGTLVTDAQLGNATAADNAGSVSVARSGVPSGNIFPGGTTTITYTATDDAG
                     NSTQATQTVTVVDNTAPVVTPPAATSVNAGLSGQAAIPNVLASTSASDNCGPVTLTQS
                     PLAGTMVGVGTHTITITASDAAGNTSTATTTFTVNGGGLNLSLSSPGTAARGRLAKLE
                     ASFSNTTNERLSVTYAVRYTSSCGSSGAIESGGPLSINPVSDRSVNVQFHVPRYACLG
                     VYTLTLKAYVNGVLVGTTTAQLTITP"
BASE COUNT          617 a          982 c          985 g          721 t
ORIGIN      
        1 agcactcgtg aacgccttcg gcgtggatac gtagcactcg tgaacgcctt cggcgtggtc
       61 cccggcactc gtgaacgcct tcggcattgg cgtttgtacg ccgtaggcgt ttactaattt
      121 cagcccaggg ttgcttcaac cctgggggac agtttttctc agcctacgaa ctctgtaaga
      181 gttcgcaagt gcccgctctt ctctgtgcag cctctgcgtc gtctgtgctg cgggtggcta
      241 ttcgttcccc acaaactttt caccaccgag cacaagaggt tcgacgcaga ggctgcacaa
      301 agaagcgctt agggcgtaat ggttagttgc gccgtggttg ttccgaccaa cactccattg
      361 acgtacgcct tcagtgtgag cgtgtacacg ccgaggcagg catatctcgg cacgtggaac
      421 tgcacgttca cgcttcgatc cgaaacgggg ttgatggaca atggtccgcc gctctcgatc
      481 gcgccgctgc ttccgcagga acttgtatag cgcacggcgt acgtgacaga tagcctctcg
      541 ttagtcgtgt tgctgaaact ggcttcgagc ttcgcaagcc tgccgcgcgc cgctgttccc
      601 ggcgaactga gtgacaagtt gagccctcca ccattgacgg tgaacgttgt cgttgcagtg
      661 ctggtatttc cggcagcgtc gctcgccgtg atcgtgatcg tatgcgtgcc gactcctacc
      721 atcgttccgg caagcggact ttgagtcagc gtaactggtc cacagttatc gctggcgctt
      781 gtgcttgcga gcacgttcgg gatcgcagcc tgaccactca atccggcatt cacgctcgtc
      841 gccgctggag gagttaccac tggcgcggtg ttatcaacta cggtcacagt ctgcgtggcc
      901 tgcgtggagt tgcctgcatc gtctgtcgcc gtgtaggtga tcgttgtcgt tcccccagga
      961 aagatgttgc cggatggaac accactgcgt gcgacgctca cgctaccggc gttgtcggca
     1021 gcagttgcgt tgccaagctg tgcgtcggta acgagagtgc cgcacgaggt ggcgtctgcg
     1081 cccgtgttgg cggtgacgtt cgccggggcg ctaatcgtcg gcgcgaccgt gtcgttcacc
     1141 gtgatcgtaa ctacggcttc agcgctcgtg atcggcgcgg cggagtcgtc gcccgtgtcg
     1201 cgaacggtga atgtaaagct gtcagatccg gcgaagttcg gattcggcgt gtaggtcaga
     1261 ttcgcgccac tgccggacaa agtgccgtgc gccgggttaa ccgacacctc aaacatcagg
     1321 ttcgcggccg ccgtttcgaa gtcgttgccc gttaacgtga tcgacacagg cgtgttgctg
     1381 ttcgtcgtaa cagactggct atcagcaacc ggcacatcgt tcaccggatt gacggtgacg
     1441 ctcacggtcg acgtgttcga gttgttactg ccgtcgttga cgcggaaagt aaaactatcc
     1501 gcgccgtgga agtttgctgc cggcgtgtaa gtgaatactg gtccatcacc cgacaacaca
     1561 ccgttcgccg gacctgaaac gatcgtgtaa ctaaacgtcg ccgagagatt cggactcacc
     1621 gcgttcagcg tgattccaac cggcacgtct tcatcagtcg tcgcggcctg attctcggtt
     1681 ccgggcggat tgttcccgtc aacgccagcc tcgatcgagt tttcgatcgc gtcgggcacg
     1741 ttggcgaaga agtcgtaacc cgtcagcgtt tcgactgcat cgaccgtggt cagatacgcg
     1801 tgccaatcgc tgttgatgct gttgtcgttc ggcatgatca cggcgatggt tctcgtcgcc
     1861 gcactcacac gcgaaacgtc gccatcgccc accggcagca ccagcgcaac cttccacgta
     1921 aacgccggca cagtcacatg accattcgcg atcgtgttcg cgggaccatt gtcacctgaa
     1981 ccgcccacac ccgctggacc agcaacgacg taaacctcgt tcggtcccag caacgtgcgc
     2041 aggaagtttt cgagatccgc ccacggcccc tgattgttgt ttggcgcttg cgggaccatg
     2101 ttcgacatca ggaacgtctc ctggttgagc gggatcgaag ccgggttatc gcgatccgcg
     2161 ttcggtgtca tgtgaccgcg atcgaatccg gacgcgaagt agtcagtcga ctgcacgcga
     2221 taccaatccg gcgacacagc cgggtctgca cggaacgtgt cggtgcgcgg caaactaccg
     2281 gtccaaccat tctccaagtg ccagctcacc caattcggcg tgcctttgtc gcggttgtag
     2341 gagagcgaga acgagggctt ctccatcagg tagttgttcg gctgcgttag atcgacaacg
     2401 gcattcgacg gattaccgag agccaggtgc acgcttgccg gatgcggcgc cggcgcgcct
     2461 gcggcaacga cggtgaacgt ccaaacgtga tccgcgaaaa gcgtatcagt gtttggcccg
     2521 gcgtcgtcga agtcctgatc gtgaacgttc gtgtgcacga tcgtgaccgt acactgctcg
     2581 ccaaactgga agccgctgtt cggggtgatg tgataaccct tcgaactgtt gaacgaagcg
     2641 acagtcgcgt tgttatgcga gccggagacc gtgcaggtga tatcgaacca cgcgcccgtt
     2701 acgtccaccg gttcactgaa atcaaccgtg acagtcgcat cgtacggcgc gttgaatccg
     2761 tcagagatcg gatcggtgcc tgcgacccat ggtccaagct cgacgatcgg cgcagtgcgg
     2821 cgcggattcg gcgtagcggt ctggaaatcg ttgccgtttt gattcgtgtc ctgcgcgccg
     2881 ttgagctttc ggaacaccgc gctcgtgttg ctcggcgccg gcgcacgcgc gccaccgtca
     2941 aaacaactgg ccgacgttcc gtagccaacg aaatccacga tgtccggatc gacgccgttc
     3001 ggacaactac cactcagcga aatcgaatta ctgacgagcg cgatcttgcc ggtcgtcgcg
     3061 ctcatgttga tgtcgcctga aatattcggc aacacggaca gcggcgcgcc gttcgcgcca
     3121 cctgacgcga gctcgacgag gaagtattca cccggagcga tcgtgccgcc gagcggttgt
     3181 ttgttggtcc aactcgtgcc cgtcgccgaa gcgtactgca acgaccagcc ggcaagattg
     3241 aatgaaattc cggtcgggtt gtagatctca atgtaatcgt ttgtgaacgt cgcgccggag
     3301 ttgcc
//
LOCUS       DASWTX010000003         2461 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_216704, whole genome shotgun sequence.
ACCESSION   DASWTX010000003 DASWTX010000000
VERSION     DASWTX010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2461)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2461)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2461
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216704"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..411
                     /locus_tag="VGD38_00040"
     CDS             <1..411
                     /locus_tag="VGD38_00040"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HEY0726425.1"
                     /translation="KTTSLTKSFGRQQMKASYSNNGNGNSHERRRYPRYYVAARLTLA
                     IEDESAKESIGLGEPQDISLGGLRVTNLPACPNVKVGDQLGLLLLDGEDALSLTGEVV
                     HHATADTFGVEFRGLSNHDQRAVGEFIGRLHARH"
     gene            433..1737
                     /locus_tag="VGD38_00045"
     CDS             433..1737
                     /locus_tag="VGD38_00045"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEY0726426.1"
                     /translation="MSKETKQTTKEAAAVAAKAAVEAYGPPTRVILRVIFIIFFVLAA
                     LFLTYKLTGIILLLVLSIFFAYLVSPLVEFIRRPRTIGARTVAVPKVLAITLAYIVIL
                     GVVGVTIYAILPGLATQYPEFSAQARDYWKSVGDRIQSVSEYSRSGRLPQQLVDAVNE
                     RVPHVLDSIGATVGFFVTTTLTYMVFYLPWLILIPILAFFLLKDADSFRRSALLMLPR
                     GRWRWRGDEFFQDINSTLAAYIRAQLTACLLIGIICSIGFTLLGLPGGLVMGVLAGIF
                     EFVPLAGPLLIAIMAAILAMLHAGPFNAFLVLLFLGILRIIHDYAVYPRLIGQGIHLH
                     PLAVIFAILAGEKLAGVTGIFLAIPVVAILTVTYRHWLEHHGNEGFADLLEAPPVVQE
                     VPMIEAAPTVHEHELHHETTPEQMVRHRPDLTTGELKMPFEE"
     gene            complement(1746..>2461)
                     /locus_tag="VGD38_00050"
     CDS             complement(1746..>2461)
                     /locus_tag="VGD38_00050"
                     /inference="COORDINATES: protein motif:HMM:NF009475.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006541 - glutamine metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="carbamoyl phosphate synthase small subunit"
                     /protein_id="HEY0726427.1"
                     /translation="TIDLDEASVVEKARQSPPMENRELASVVTTKEPYEFPAAGEERF
                     HVVCYDFGVKRNSLREVAQLGVRTTVVPASTPAAEVLALKPDGIFLSNGPGDPASMNT
                     EVEQIQQLLKQQVPIFGICFGHQLLGRAFGGKTFKLVFGHRGGNQPVKEVSGKGVEIT
                     SHNHGFAVKAESLPPEVEITHINLNDQCVEGMRHRTLPVISVQYHPEAAPGPHDAEHH
                     FQRFVELMEKRDAGKAVGA"
BASE COUNT          486 a          684 c          713 g          578 t
ORIGIN      
        1 aagacgacgt cactcactaa gtcattcggg agacaacaga tgaaagcctc gtattccaac
       61 aacggcaacg gaaattctca cgaacggcgg cgttatccgc gttactatgt cgcggcgcgg
      121 ctgacgctcg cgatcgaaga cgagagcgcg aaagagtcga tcggcctcgg cgagccgcag
      181 gacatcagtc tcggcggttt acgagtgacg aacctgccgg cgtgtccgaa cgtaaaggtg
      241 ggagatcaac ttgggttgtt gctgctcgac ggcgaggatg cattgtcgtt gacgggcgaa
      301 gtagttcatc atgcaacggc cgatactttt ggggttgagt ttcgtgggtt atcgaatcat
      361 gatcagagag cagtaggaga gtttattgga cggctgcacg cgcgtcatta actgaagcgc
      421 cagcgattca cggtgagcaa agaaacgaaa cagacaacca aagaagccgc ggcagtcgcg
      481 gcgaaagcag cagtcgaagc atacggcccg ccgacccgcg taatcctgcg ggtcattttt
      541 atcatcttct tcgtactggc cgcgctattc ctgacttaca agctaaccgg cattatcctg
      601 ctgctggtgc tctcgatctt cttcgcgtac ctcgtctcac cgctggtgga gtttatccgg
      661 cgcccgcgaa cgatcggcgc gcgcacagta gccgtaccga aggtgctggc gatcacgctg
      721 gcttacatcg tgattctcgg cgtagtgggt gtcacgatct atgccatctt gccggggctc
      781 gctacccagt atccggagtt ttccgcccag gctagggact actggaaatc agtaggcgac
      841 aggattcagt ccgtcagcga gtactcgcgt tcgggtcgct tgccgcagca gttggtcgac
      901 gcggtgaacg agcgagtgcc gcacgtgctg gattcaatcg gagctacggt cgggtttttt
      961 gtcaccacta cgcttactta catggtgttt tacctgccgt ggttgattct gattccaata
     1021 cttgcttttt tcctgcttaa ggacgcggac agttttcgcc gttcggcatt gctgatgctg
     1081 cctcgcggac gctggcgctg gcgcggcgac gagtttttcc aggacattaa ctctacgctc
     1141 gcagcctaca ttcgcgcgca actcacggca tgtctcctga tcggcatcat ctgttcgatc
     1201 ggttttacgc tgctgggcct gccgggtgga ctggtgatgg gtgtgctggc cggtatattc
     1261 gagtttgttc cgcttgctgg accgctgctg atcgcgatta tggcggccat cctcgcgatg
     1321 ttgcatgcgg gtccgttcaa tgcatttctc gtgttgctgt ttctcggcat cctgcgaatt
     1381 attcacgact atgccgtcta cccacggctg atcggacaag gcattcacct gcatccgctg
     1441 gcggtcatat ttgcgattct ggcgggagag aaactggcgg gagtgacggg aatattttta
     1501 gcgatcccgg tggtcgcgat cctgacggtt acgtatcgtc actggctcga gcatcacgga
     1561 aacgaagggt ttgcggatct cctcgaagcg ccgcccgtgg ttcaggaagt tccgatgatc
     1621 gaagcggctc ccacagtgca cgaacacgag ctacatcacg agacgacgcc cgaacagatg
     1681 gttcgccaca ggcccgatct cacgactggt gaattgaaaa tgccgtttga agagtagcgc
     1741 gaggtttacg cgcccacggc tttgcccgcg tctcgctttt ccatcaattc aacaaaccgc
     1801 tgaaagtgat gttccgcatc gtgtggtcca ggcgcggctt cggggtgata ctgcactgaa
     1861 ataaccggca gcgtgcggtg acgcattcct tccacgcact gatcgttgag gttgatgtgc
     1921 gtgatctcaa cctccggcgg caggctttcc gctttcaccg caaagccgtg gttgtgtgaa
     1981 gtgatctcga cgccttttcc cgacacttcc ttcaccggct gattaccgcc gcgatgtcca
     2041 aacacgagct tgaaagtctt ccccccaaac gcgcggccga gtagttgatg gccaaagcag
     2101 ataccgaaga tcggcacttg ctgttttagc agttgctgga tctgttccac ttccgtgttc
     2161 atcgacgccg gatcacccgg accgtttgag agaaagatgc cgtcaggttt gagcgccagc
     2221 acttccgcgg ccggcgttga agcgggaacg actgtggtgc gcacgccgag ttgggccacc
     2281 tcgcgcagcg aattgcgttt cacgccgaag tcgtaacaaa caacgtgaaa tcgctcttct
     2341 ccggcggcgg gaaattcata gggttcttta gtcgtaacaa ccgaagcaag ctcccggttc
     2401 tccatcggcg gcgactggcg tgccttttcc acgacactcg cttcgtcgag atcgatcgtc
     2461 g
//
LOCUS       DASWTX010000004         2181 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_411680, whole genome shotgun sequence.
ACCESSION   DASWTX010000004 DASWTX010000000
VERSION     DASWTX010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2181
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411680"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(88..876)
                     /locus_tag="VGD38_00055"
     CDS             complement(88..876)
                     /locus_tag="VGD38_00055"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY0726428.1"
                     /translation="MQEAPQHTPGTFCWVELGTADAGAAKSFYQELFGWDYEDGEAGP
                     DMTYTMIKLNGKDVGGLYQLNSAMLAEGIPPHWLGYISVANADDATAQATAAGGAVMK
                     GPFDVATAGRMSIIQDPTGAVFAIWQAKDTAGVGVFGEFGAFCWQELGTRDTQKAKDF
                     YTTLFGWATEAFPGPVAYTIFKSGREAVGGMYQITPEMGPLPPHWLTYFGVADCDATV
                     QKATELGGSVMKSPEDIPGVGRFAILRDPSSAVFAILKFAPEGA"
     gene            complement(1522..1959)
                     /locus_tag="VGD38_00060"
     CDS             complement(1522..1959)
                     /locus_tag="VGD38_00060"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF016555.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEY0726429.1"
                     /translation="MTEENCLFCRIVSGEVPAVVVFEDKNTLAFLDHRPLFHGHTLLV
                     PREHYETLTDLPVKQVGPLFENTQLLAGVVEAAMEAEGTFVAMNNRVSQSVPHLHIHI
                     VPRRRKDGLKGFFWPRTKYKTQEEMEVVQQKIAAVLEKIIRGK"
     gene            complement(1993..>2181)
                     /locus_tag="VGD38_00065"
     CDS             complement(1993..>2181)
                     /locus_tag="VGD38_00065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726430.1"
                     /translation="LIGIDRSIAAWRWMQLAKPDRMESIVPLILQLERLRQRVEKAFP
                     EARDFVRPGFDELRGPAN"
BASE COUNT          470 a          625 c          558 g          528 t
ORIGIN      
        1 aaacaagacg tgctttcatt tacgtcacaa ggaaggggcg gccacaaagt gccgcccctg
       61 caaaacccga agttaaaagt ttgaagctta cgctccctct ggcgcaaatt tgagaatcgc
      121 gaaaactgcc gatgacggat cgcgcagaat cgcaaaacgt ccgactcccg gaatgtcttc
      181 cggggatttc atgacgctgc cgccgagttc cgttgccttc tgcacagttg catcgcagtc
      241 ggcgacgccg aagtaagtga gccagtgcgg tggcagcgga cccatctcgg gagtgatctg
      301 gtacatgccg cccacagctt cacggccgct cttgaagatc gtgtatgcga ctggtccagg
      361 aaacgcttcc gtggcccaac cgaataacgt cgtatagaag tcttttgctt tctgggtatc
      421 gcgcgtgccg agttcctgcc agcaaaacgc tccgaactct ccgaagactc ccactcccgc
      481 cgtatccttc gcctgccaga tggcgaaaac cgctcccgtt ggatcttgaa taatcgacat
      541 gcgtccggcg gtagcaacgt cgaaaggtcc tttcatgacg gcgccgcctg cggctgttgc
      601 ctgtgccgtt gcgtcgtcag cattcgcaac tgaaatgtag ccgagccagt gtggcgggat
      661 tccctcggcg agcatcgcgc tgttgagctg gtaaagaccg ccgacgtctt tgccgttcag
      721 tttgatcatc gtgtaggtca tgtccgggcc ggcttcaccg tcttcgtaat cccagccgaa
      781 gagttcttga taaaaactct ttgccgcgcc ggcgtcggcg gtgccgagct cgacccagca
      841 gaaagttcct ggtgtgtgtt gtggggcttc ttgcattcgc gcttcgctca tttaaaacag
      901 aacctcctca gttaaatcgg tcggtcagtt ggaagggtga agcggtagag tagcaggaaa
      961 gtacggcgca gtaaaaaacg aaatgcgcta ctctcagcaa gctgaaagca gcgcaatccg
     1021 ttgttcttac aaagagccga agctctctgc aagatggcct caagagcatg tacacgctca
     1081 agctgccgga tttgtatccc ggttaataac tggcggtcag ttaatcaccg gtcagcactc
     1141 gaaaatgttt tcacaaatcc tcgcgttccg aagaacgcgg tgccgttagg tttttgttgt
     1201 ggtggctttt cctccaccgc cgattacgct tcggcaacga agcccaactt tcgttgaaca
     1261 acttcgctcc ctttggcggg tccttgcctc agggcgccac acgtttttat ccgcatggct
     1321 cgagaaagtc tcgcaacctt ctctagctga acctttcggt tctgactagg gcgtcatttg
     1381 aatcaacagc cgcctgtcaa ttctctctct cgggtgtcac cacaccgatt gccgatccct
     1441 tcgtcagtct cgagagccgc aaccctcgcg acagggagag ttatactcct gagttagttt
     1501 tagatcaaat ttttgagtgt tttattttcc gcgaattatt ttttctaaaa ccgccgcgat
     1561 tttttgttgg accacctcca tctcttcctg tgttttgtat tttgttcgcg gccagaaaaa
     1621 tcctttcaaa ccatctttgc ggcggcgcgg cacgatgtga atgtgcaagt gcggcacact
     1681 ctgactgacg cgattgttca tcgcgacaaa agttccttca gcttccatcg cagcttcaac
     1741 aacacccgcg agcagttgcg tgttttcgaa gagaggcccg acttgtttta ccggcaaatc
     1801 cgtcaacgtt tcgtaatgct cgcgcggcac caacagcgtg tgaccgtgaa acaacgggcg
     1861 gtgatcgaga aacgccagcg tgttcttgtc ctcaaagacc acgactgccg gaacttcgcc
     1921 ggacacaatt cgacaaaaca gacagttttc ttctgtcatc tatcgttcct ccctgaaaga
     1981 actgtcgcgc gtctagttcg ccgggccgcg taattcgtca aagccgggtc tgacgaaatc
     2041 acgcgcttcc ggaaacgcct tttcgactcg ctggcgcagc cgttcgagct gcaaaatcag
     2101 cggcacgatc gattccattc ggtccggctt cgcaagctgc atccagcgcc acgcggcgat
     2161 cgaacgatcg atgccgatca g
//
LOCUS       DASWTX010000005         3303 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_86721, whole genome shotgun sequence.
ACCESSION   DASWTX010000005 DASWTX010000000
VERSION     DASWTX010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3303
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86721"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            477..1664
                     /locus_tag="VGD38_00070"
     CDS             477..1664
                     /locus_tag="VGD38_00070"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0726431.1"
                     /translation="MLISVLLIGIWVVEISPQQAQRPRRVTNGTEQTNETKKPEGSNK
                     TDDSNEVDEGDVVRVDTQLVSVPAVVTDTAGRPLSGLKPENFRIIEDGQPQTIANFGT
                     TQTPFEIALLLDTSGSTRDDVALIRSAAHSFIEALRPGDRVGIVAFNTARTVNEPVAT
                     VEVLAPLTGDRSQLRQAIENLGASNGTPYYDALERVVQTIFRDPPGEDVRGRRAVVAL
                     TDGVDSASNSDFGTARMLLSRAGVACYFVQINTEDFVEDRLMKDCQDDGQLSLSQKQI
                     ERYRRVFVPGASAESFNNFCRMGPFERMSISRELYNLARREMNDLARISGGRSFVAAT
                     LADARAAFARVAADIGTQYSLGYYPTNKARDGKFRTIKLEVKGVKEKAQIRARDGYYA
                     PKQ"
     gene            1676..2857
                     /locus_tag="VGD38_00075"
     CDS             1676..2857
                     /locus_tag="VGD38_00075"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: protein motif:HMM:NF003766.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008973 - phosphopentomutase activity
                     [Evidence IEA];
                     GO_process: GO:0009117 - nucleotide metabolic process
                     [Evidence IEA];
                     GO_process: GO:0043094 - cellular metabolic compound
                     salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HEY0726432.1"
                     /translation="MQNPFNRILLVVLDGAGIGAMPDAPEWGDAGSDTFGHILESRAV
                     RLPNLQRYGLGNIRPLANLPAIENPIGSYGRCALRSNGKDTTTGHWEMAGIILERAFP
                     TYPNGFPNAVIDRFVREADVPGILGNIPASGTEIIKVLGEEHVQTRKPIVYTSADSVF
                     QIAAHEEVIPLERLYEMCEIARRILDGEHKVGRVIARPFLGQPGAFYRTENRHDYAVP
                     PPRENLLPALADADLDVVCIGKIASIYDSIGVTRDLTAKNNEQSIDQTIKALGDQTRG
                     LIFSNLVDFDMLYGHRRDTEGYAKALEHFDSRLPEIESAMRDDDLMMITADHGNDPTF
                     PGSDHTREYAPLLVFGKSSRPGINLGTRPSLADIGQTIAANFGLRLAAGESFLRELRQ
                     E"
BASE COUNT          724 a          998 c          918 g          663 t
ORIGIN      
        1 cagatggttt gttggcgtgc atgaaagtca acgccgatat atattttctg cacagcgcct
       61 cctttcagtc tccatgtcaa cagagctgct cgtgagtcta gcactcacga acggaggcgc
      121 tgcttcataa catcagggtt gtcccaaccc tggggcagag catcaaaaga gttccaacgc
      181 tgaaagcgtt cgcgagatga cgcgcgctcg ccaacacctt cggcgttggt accccaaggg
      241 taatgtttgt tcccagggtt atgaaccctg ggctgcaatt agtcaacgcc ttcggcgttc
      301 agagcaaaac agtaccgcaa cggtgaaacc gtaccgcagg actgcagaac cactaccccg
      361 agaccattct gcggcaccgt tctgttttgc agtttgcggc gcgggcggtt tatattctcc
      421 ccacgagagc ccatccggaa ttagctatgt caatactcgc ttttcgccgt acccgtttgc
      481 ttataagcgt tttgctgatt gggatttggg ttgttgaaat ctctccgcaa caggctcaac
      541 gtccgcgccg cgtcacaaac ggcaccgaac agacaaacga aactaaaaaa cccgaaggtt
      601 caaacaagac cgacgattca aacgaggtcg acgaaggcga cgtcgtccgt gtcgacacgc
      661 aactcgtttc tgttcccgct gtcgtaacag acaccgccgg ccggcccttg tcgggtttga
      721 agcccgagaa ctttcgcatc atcgaagacg gccagccgca gacgatcgcc aacttcggca
      781 ccacgcaaac gccgtttgag atcgctttgc tgctcgacac ttccggttca actcgcgacg
      841 acgtcgcgct gatccgctcc gcggcgcaca gcttcatcga ggcgctgcgt ccgggcgatc
      901 gcgtcggcat cgttgcattt aatacggcgc gaacggttaa cgagccggtt gcaaccgtcg
      961 aagtgctcgc gcctttgacc ggcgaccgca gccagttgcg ccaggcaatc gaaaacctcg
     1021 gcgcgagcaa cggcacgcct tattacgacg cgctcgaacg cgtcgtgcaa acgatctttc
     1081 gcgacccgcc gggcgaggac gtgcgcggcc gtcgcgcggt cgttgcactg acggacggcg
     1141 tcgattccgc gagtaactca gatttcggca ccgcgagaat gttgctttca cgcgccggtg
     1201 tcgcgtgtta cttcgtgcaa atcaacacgg aagactttgt cgaagaccgt ttgatgaaag
     1261 actgccagga cgacggccag ctttcactct cgcaaaaaca gatcgaacgt taccggcgcg
     1321 tcttcgtccc cggggcaagc gcagaaagct tcaacaactt ctgccgcatg ggcccattcg
     1381 aacgcatgtc gatcagccgc gagctctaca accttgcgcg acgcgagatg aacgacctgg
     1441 cgcgcatttc cggcggacgc agttttgtcg ctgcaacctt ggcggacgcg cgcgccgcgt
     1501 ttgcgcgcgt ggccgcggac atcggaacgc aatacagtct cggctattac ccaaccaaca
     1561 aagcgcgcga cggaaagttt cgcaccatca agctcgaggt caagggagtg aaagagaaag
     1621 ctcagattcg cgcccgcgac ggatactacg caccgaagca ataatcacca cctgaatgca
     1681 aaatcctttc aaccgaatcc tgttagtcgt gctcgacggc gccggcatcg gcgctatgcc
     1741 tgatgcgccc gaatggggcg acgccggttc cgacacgttt ggccacattc tcgaatctcg
     1801 cgcggtgcgt ctgccgaatt tgcagcgcta cggtctcggc aacatccgtc cgctcgcgaa
     1861 cctgccggcg atcgaaaatc caattggttc ctacggccgg tgcgcgttgc gttcgaacgg
     1921 caaagacacg acgacgggtc actgggaaat ggcgggcata attctcgaac gcgctttccc
     1981 gacgtatccc aacgggtttc ccaacgcagt aatcgatcgt ttcgtgcgtg aagcggacgt
     2041 tccgggcatt ctcggaaaca ttccggcttc gggcactgag atcatcaaag tgctcggcga
     2101 agagcacgtc caaacgcgta aacccatcgt ctacacgtcc gctgattccg tttttcagat
     2161 cgcggcgcac gaagaggtga tcccgctcga acgtctttac gagatgtgcg agatcgcgcg
     2221 gcgcatactc gacggtgagc acaaagtcgg gcgtgtgatt gcccggccct ttttgggcca
     2281 accgggcgcg ttctatcgca cggagaatcg tcacgattac gccgtgccgc cgccgcgtga
     2341 gaatttgctg ccggctttgg ctgatgcgga tttagacgtg gtttgtatcg ggaagattgc
     2401 gtcgatctac gactcgatcg gcgtgacacg cgacctgacg gcgaagaaca acgagcagtc
     2461 gatcgatcaa acgatcaaag cacttggcga tcagacgcgc ggcttgatct tttcgaacct
     2521 cgtcgacttc gacatgctct acggacatcg tcgcgacaca gaaggctatg caaaagctct
     2581 ggaacacttc gactcgcggt tacccgaaat cgaatccgcg atgcgcgacg acgacttaat
     2641 gatgatcacg gccgatcacg gaaacgaccc caccttcccc ggctccgatc acacacgcga
     2701 gtacgcgccc ctcctggtct tcggcaaatc ctcccgtccc ggcatcaacc tcggcacccg
     2761 cccctccctt gcggacatcg gccaaaccat cgccgccaac ttcggcctgc gcctggccgc
     2821 cggcgagagt tttttgcgcg aactccggca ggagtagtgt cgccgtgagg actgctgtgc
     2881 taaattgtca ggcatgagta ctcacgtcac agaactattc gcaaaggcct caaccctttc
     2941 cgagaacgaa cgagccaccc tcgcaggctt attaattgag agtcttgagt cagaaatcga
     3001 tcctgacgcc gaggaagcgt ggcgcaaaga aatagagcgc cgagtagcag aattggattc
     3061 cggcactgcg aagacagtgg cttgggagac tgttcgggct gagcttcttc gacgtacgga
     3121 atgaaccgcc gaataattct ccattctgaa gccgaggacg aaattttcca ggcgttagcc
     3181 tggtatcagg aacgcagccg tctagcggcg cgtgccttcg ttcaggagtt gacccacgtc
     3241 gtgaggctgg ccgcgcgatc accaagagcg tggcctcttg tcgttggaga tacgaggcgc
     3301 gtg
//
LOCUS       DASWTX010000006         1847 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_195057, whole genome shotgun sequence.
ACCESSION   DASWTX010000006 DASWTX010000000
VERSION     DASWTX010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1847
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195057"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..699)
                     /locus_tag="VGD38_00080"
     CDS             complement(<1..699)
                     /locus_tag="VGD38_00080"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HEY0726433.1"
                     /translation="MTIEAPLVAGQKEGISTDDVIYLIMIDRFADGDRSNNAKDDFQN
                     ARSYHGGDLRGIIDRLPYVKELGVTALWLTPWHDNWNGVNRCDKPWCPNTYYHGYHAV
                     DYYAVEDRFGDLATLRELVDKARALGFKVIQDQVANHVGSQHPWVHDPPLPNWFHGTL
                     AKHELNSFRNSVLLSPHSHPRDVRNVLDGWFNDDLPDMNQEEPEVARYEIQNALWWVG
                     VTGIDGIRQDTIQYM"
     gene            complement(1033..>1847)
                     /locus_tag="VGD38_00085"
     CDS             complement(1033..>1847)
                     /locus_tag="VGD38_00085"
                     /inference="COORDINATES: protein motif:HMM:NF024299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0726434.1"
                     /translation="GLIASAQGDSKAAMMHWLQALEVQPLFAEANFMLGEEFLKNRLA
                     ERAIPFYELALEQSKGQLVYHLRLGVACVRGQHYERAREVFTRALERYPDNANLYFLL
                     GYTGRAEGQYDQAVAAFQKVLKLEPDNPDAIANLGYIASQRGENVEAERLLRRAIQLN
                     PQAFPSYHDLGRLLVKLKRYEEALPLLKRGVELNDKDPGIRYQLFLAYSRLKRKDEAD
                     KELAEFKRLDEVNRHGATPLSGMAKPNTAKDGEILPPLPAGASGDTAKPRTP"
BASE COUNT          372 a          532 c          539 g          404 t
ORIGIN      
        1 catgtactga atcgtgtcct ggcgaatgcc gtcgatgccc gtgacgccga cccaccacag
       61 cgcgttttga atctcgtaac gcgccacttc cggctcttcc tggttcatgt caggcaggtc
      121 gtcgttgaac cagccgtcga ggacgttgcg cacgtcgcgc gggtgcgaat gcggcgaaag
      181 cagaacgctg tttcgaaaac tgttgagctc atgcttcgcg agcgtgccgt gaaaccagtt
      241 tggcagcggc ggatcgtgca cccacggatg ttgcgaaccg acgtgattcg cgacctggtc
      301 ctgaatcact ttaaaaccga gcgcacgtgc cttatcgacc agctctcgca acgtcgcgag
      361 atcgccgaaa cgatcttcga ccgcgtaata atcgactgcg tgatagccgt ggtaatacgt
      421 gttcgggcac cacggtttgt cacaacggtt cacgccgttc cagttgtcgt gccacggggt
      481 taaccaaagc gccgtcacgc cgagttcttt gacatacggc aggcggtcga tgatgccgcg
      541 caggtcgccg ccgtgatacg agcgtgcgtt ttgaaaatcg tctttcgcgt tgtttgaccg
      601 atcgccgtcc gcgaaacgat cgatcatgat caggtagatc acgtcatccg tggaaatccc
      661 ttccttttgg ccggccacaa gcggcgcttc tatagtcaac gggacttcag tacggccggc
      721 gtttgtctgt agtaacagcg agtacttgcc cggtctggtt gttgaactga tatgaaggtc
      781 agcaaagatg taggtggagt tcgcgttgaa cttaaggttc gttacgcgaa ggttagcgga
      841 gggggatttt atgcgtgccc cgctgaggtt acggccgcgg attaaaagcc ggatgggatt
      901 gattgaatgg ttgggccacc aggatggtgg atcgacctgc gctacggttg gagcctgagc
      961 taaagcagcc gaactaaaaa gtgctaccag cgaacataag aggacaaagc gtcgcaaagg
     1021 tccggctcca atctagggtg ttcgaggctt agcggtgtcg cccgacgccc cggccggcaa
     1081 cggcggcaag atttcgccgt cctttgccgt gttgggtttc gccattccgc tcaggggcgt
     1141 cgcgccgtgc cggttaactt cgtcgagccg tttgaattcg gcgagttcct tgtcggcttc
     1201 gtcctttcgt ttcaatcgtg agtaagccag aaaaagttga tagcggatgc cggggtcctt
     1261 gtcgtttagc tcaacgccgc gtttcaacaa cggcaacgcc tcttcgtagc gcttcagctt
     1321 caccagcaaa cgcccgagat cgtgatacga cggaaacgcc tgcggattca gttgaatcgc
     1381 gcgccgcaac aagcgctctg cttcgacgtt ctcaccgcgc tggctcgcga tgtaaccgag
     1441 attggcgatc gcatccggat tgtcaggctc cagcttcagc actttctgaa acgcggcgac
     1501 cgcctgatcg tactggccct ccgcacggcc cgtgtagccc aacagaaaat agagattggc
     1561 attatccgga tagcgttcga gcgcgcgcgt gaagacctcg cgcgcacgct cgtaatgctg
     1621 gccgcgaaca cacgcgacgc cgagccgcag gtgatagacc agttggccct tgctctgctc
     1681 cagcgcgagt tcgtaaaacg gaatcgcccg ctccgccaaa cggttcttca gaaactcctc
     1741 gccgagcatg aagttcgctt ccgcaaacaa cggctgcact tcgagtgcct ggagccagtg
     1801 catcatcgcg gctttgctgt cgccctgcgc cgatgcaatc aggccca
//
LOCUS       DASWTX010000007         2719 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_130125, whole genome shotgun sequence.
ACCESSION   DASWTX010000007 DASWTX010000000
VERSION     DASWTX010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2719
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130125"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..615
                     /locus_tag="VGD38_00090"
     CDS             <1..615
                     /locus_tag="VGD38_00090"
                     /inference="COORDINATES: protein motif:HMM:NF024793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY0726435.1"
                     /translation="ELLLELGRALESRHSRGLRTVLIVDEAQGLSAHVLEEIRLLSNF
                     ESNTAKQLQIVLTGQPELREVLNNPDLRQLKQRIALRCVIKALPNVEETDRYIISRLL
                     VAGAERTDIFSPAAVDYIFRCSEGIPRNINNLCDNALLAGYAAGEQVISRTIIEEVAE
                     TFDMLPRQNPGMPTSVERESPSKIFSATGEAELWAAGTGVEKDS"
     gene            643..1737
                     /locus_tag="VGD38_00095"
     CDS             643..1737
                     /locus_tag="VGD38_00095"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004713 - protein tyrosine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0004715 - non-membrane spanning protein
                     tyrosine kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CpsD/CapB family tyrosine-protein kinase"
                     /protein_id="HEY0726436.1"
                     /translation="MGRVFDAIRKSSTANNNGSAAKRQQPLDSERREGSGIAGSPSAQ
                     EIEERLFAGSTIMAISKEAARSSASSAHTTDVPDGSALPGGIASRDAGATLDAAGTTR
                     AGGYVSYDISPSRVEPHLVAISPPRSAYCEQFRALRTRILQAGEKMQIRAMVVTSAGI
                     GEGKTLTALNLGWLLAQTEGVRALVIDSDLRRPCATDYFGIDANVGLSEVLGGQLNLE
                     DAIVRLDPAGLYLLPGGRPRDDVAELLSGPSYTRVLTEARRMFDYIVIDAPPLGIFTD
                     ANVLMSRADGALLVVRAGKTRYSVVDKLLEQMPRERLLGVVLNRADEQPEATNYYSQY
                     RYSNREPELNGRNGKPLPENHREEEVAVLN"
     gene            1764..>2719
                     /locus_tag="VGD38_00100"
     CDS             1764..>2719
                     /locus_tag="VGD38_00100"
                     /inference="COORDINATES: protein motif:HMM:NF025104.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEY0726437.1"
                     /translation="MLLLFGEAALVYGAIIAAVYLRVGVENAYFELIIKNGLWKAGVA
                     TFFCIAGFYLFDLYDFVVMHDRRELVLRLVQALGLAWIVLALSFYFFPALMLGRSISL
                     IALPLALTLMVAWRVSIHWFLGHPDFGERILIVGSGDSAVEIAREVLNRPDAGYRVVG
                     FVGTDSGLLGKSLINPRVIGLTEELGEIVAREKIDRIVVAMGERRGQFPTDRLLDLSL
                     TGSVWIEEGAAFYERITSRVSLSMIRPSWLIFTGPGRQKRFATLSRTIVHRFAALIGA
                     LLSLPIIIVTAILIKLDSRGPVFYKQERVGKNGRTFVLTKFRS"
BASE COUNT          523 a          779 c          823 g          594 t
ORIGIN      
        1 gagttgttgc tggagcttgg gcgcgcgctc gaatcacgcc attcgcgcgg tttgcgcacg
       61 gtattgatcg tcgacgaagc gcagggactt tcggcgcacg tgctggaaga gatcaggctg
      121 ctttccaact tcgaatcaaa caccgccaag cagttgcaga tcgtgttgac tggtcaaccc
      181 gaactgcgcg aggtgctcaa caaccccgac ctgcggcagt tgaaacagcg tatcgcgctt
      241 cgttgcgtga tcaaggcgtt gccgaacgtc gaggaaacgg atcgttacat catttcgcgg
      301 ttgctcgtcg ccggcgccga gcgcaccgac atcttttcac cggcggcggt tgattacatc
      361 tttcgttgtt ccgaaggcat tccgcgcaac atcaacaacc tttgcgacaa cgctttgctg
      421 gccggttacg cggccggcga acaggtaatc agccggacaa ttatcgaaga ggttgccgaa
      481 accttcgaca tgttgccgcg ccagaacccc ggcatgccga cgtcggttga acgcgaatcg
      541 ccgtcaaaaa tcttttccgc caccggcgaa gccgaactat gggccgcggg caccggagtg
      601 gaaaaggaca gctaggtttg agcggcttag agaggtgact taatgggaag agtattcgac
      661 gccatcagaa aatccagcac tgctaataac aatggcagtg cggctaaacg acaacaacca
      721 ttagattcag agcgccgtga aggttccggt atcgccggtt cgccttccgc ccaggagatc
      781 gaagagcggc tgtttgccgg ctcgacgatc atggcgatct cgaaagaggc ggcgcgaagt
      841 tcagcgtcct ctgcgcacac gacggatgta cccgacgggt cggcactccc cggcggaatt
      901 gcttcgcgtg atgctggggc aactttggac gctgccggga cgacgcgcgc cggaggctat
      961 gtcagctatg acatttctcc ttcgcgcgtc gaaccacatc ttgttgcgat tagcccaccc
     1021 cgctccgctt actgcgagca gtttcgcgca ttgcgtacac gcatcctgca agcaggcgaa
     1081 aagatgcaga tacgagcgat ggtcgtgacc agcgcgggca tcggcgaagg caagactttg
     1141 acggcgctga atctaggctg gctgttggcc caaacggaag gcgtgcgcgc tctcgtgatc
     1201 gatagcgacc tgcgccgccc gtgcgccacc gactatttcg gcatcgacgc caatgtcggc
     1261 ctctcggaag ttctcggcgg acaactcaat cttgaagacg cgatcgtgcg tctcgatccg
     1321 gcgggtcttt acctgttgcc cggcggcagg ccgcgagacg acgttgcgga attactctcc
     1381 ggtccgagct acacgcgcgt gctcaccgaa gcgcgccgca tgtttgatta catcgtgatc
     1441 gacgcgccgc cgcttggcat cttcactgat gcaaacgtgc tgatgtcgcg tgccgacggc
     1501 gctctgctcg tcgttcgcgc cggcaagacg cgttactcgg tcgtcgacaa gctgctcgaa
     1561 cagatgccgc gcgagcgtct gctgggtgtt gtactcaacc gtgcagacga acagcccgaa
     1621 gcgactaatt attactcgca gtaccgctac tcaaatcgag agcccgaatt gaacggccgc
     1681 aacggtaagc cattgcctga gaatcatcgc gaagaggagg tcgcggttct gaattgagag
     1741 cgctgcgcgt aaatgggcga acgatgctgc tgctttttgg tgaagcagca ctggtctacg
     1801 gcgcaatcat cgccgctgtt tacctgcgcg tcggcgtgga gaacgcttat ttcgagctga
     1861 ttatcaaaaa cggtttgtgg aaagcgggcg tggcgacgtt cttctgtatc gccggtttct
     1921 atctgttcga tctgtacgac ttcgtcgtca tgcacgatcg ccgcgagctc gtgctgcggc
     1981 tcgtgcaggc actcggtctt gcgtggatcg tgctcgcact cagtttttat ttctttccgg
     2041 cgttgatgct tggccgcagc atctcgctca tcgcgctgcc gctcgcgctg acgctgatgg
     2101 tggcgtggcg cgtctcgatt cactggtttc tcggccatcc cgattttggc gaacgaatcc
     2161 tgatcgtcgg ttcgggtgat tcggcagtcg agatcgcgcg cgaggttttg aaccggcccg
     2221 acgctggtta tcgcgtcgtc ggtttcgtcg gcacggattc cgggttgttg ggcaagagcc
     2281 tgatcaaccc gcgtgtgatc ggattgacgg aagagctcgg cgaaatcgtc gcgcgtgaaa
     2341 aaatcgatcg catcgtcgtg gcaatgggcg aacgccgcgg gcagtttccg accgacaggc
     2401 tgctggatct gagtttgacg ggcagcgtct ggatcgaaga aggcgctgcg ttttacgaac
     2461 gcatcacgag ccgcgtgtcg ttgagcatga ttcggccatc gtggttgatt tttaccggcc
     2521 cgggcaggca gaagcgattc gctaccctgt cgcgcaccat cgttcaccgt ttcgccgcgt
     2581 tgatcggcgc gctgctctcg ctgccaatca tcatcgtgac cgcgattctg atcaaactcg
     2641 attcgcgtgg cccggtcttt tacaagcagg aacgcgtcgg caagaacggc cgcacgtttg
     2701 tgttgacgaa gtttcgctc
//
LOCUS       DASWTX010000008         2649 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_411733, whole genome shotgun sequence.
ACCESSION   DASWTX010000008 DASWTX010000000
VERSION     DASWTX010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2649
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411733"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            30..>2649
                     /locus_tag="VGD38_00105"
     CDS             30..>2649
                     /locus_tag="VGD38_00105"
                     /inference="COORDINATES: protein motif:HMM:NF019589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726438.1"
                     /translation="MKPNGNHTLPGPKFDRAQLEVLAGGSISSVFGELFKAQDSYSRQ
                     VRMPEPPLLLADRVTGIDAVAGSMGTGTIWTETNVSPDGWYLDSTGRMPAGIMIEAGQ
                     ADLLLISWLGVDLLNRGERVYRLLGCELTFKGGLPVPGDTLVFRIQIDGHAQQGDVRL
                     FFFHYDCHVNGELRLTVRNAQAGFFSDKELLESAGVLWNCAEAPAPKNGQSDSPAVVC
                     QSRSFSHAQLTAFAEGRPFDCFGKGWEKTQAHVRTARITPGRMLLLEQVTDFDPRGGP
                     WGRGYLRAETTVTPDDWFFEGHFKNDPCMPGTLMFEACLQAMAFYIAAMGFTIDHDGW
                     AFEPVRDEAYEMRCRGQVTPSSKQLTYEVFVSEVSAGPLPTVFADLLCTVDGLKVFHA
                     KRVGVRLAPAWPLDHWQSLRPHAIQLTGEPVPLNTLGGLRGYEDANLPAAVNGFKFGY
                     ASLLACAWGRPSAAFGPDYASLNGPRIVPRLPGPPYHFISRVTRIDAQMAGMKSGGTV
                     EVEYDLPDAAWYFEQNGNATMPFCVLLEAALQPCGWLALYVGDTLKTTGDLLFRNLDG
                     TCTLHGELTPEAGTLRTQVKLVSLVRTHEMTIESFEVNCYLGDRHILELQAVFGIFPP
                     SAFENQVGLPATDDDRARLNASSDRFVDLSSTPNRYFTGELRLPGPMLLMIDRVTGFL
                     PNGGRAGLGYLRAEKDVRPGDWFFKAHFFQDPVQPGSLGLDAMCQLLQFYMIENDLGA
                     GIPQPRFEPIMVGNPVTWTFRGQVVPANRVVTVEMEIAEVGEDARGPFAIAEAWLWVD
                     GMRIYHAEKLGMRIVSEVKRSDAQVLDPARDTWLNDHCPTWTVPVLPMMSMVDRIAEA
                     ASEHAQREVVAIEEVQL"
BASE COUNT          523 a          824 c          776 g          526 t
ORIGIN      
        1 caacgcagtc attaccggcg gagacagccg tgaaacccaa tggcaaccac actctgcccg
       61 ggccgaaatt cgatcgcgcg caattggagg tgctcgctgg cgggtcaatc tcctcggtgt
      121 ttggtgagtt gttcaaggcg caggattcat actcgcgcca ggtgcgcatg cctgagccgc
      181 ctttgcttct cgccgatcga gtcacgggca tcgacgccgt tgcaggctcg atgggcaccg
      241 gcacgatctg gaccgagacg aacgtctcgc ccgacggttg gtatctcgac tccacaggcc
      301 gcatgcccgc cgggatcatg atcgaggccg gacaagccga cctgctatta atcagttggc
      361 tcggcgtcga tctgctcaat cgcggcgaac gcgtctaccg cttactcggc tgcgagctta
      421 cgttcaaagg cggcctgccc gttcccggcg acacgctggt cttcagaatc cagatcgacg
      481 ggcacgctca acaaggagac gtgcgcctct tcttcttcca ctacgactgc cacgtgaacg
      541 gcgagttgcg cttaaccgtg cgcaacgcgc aagccggttt cttttctgac aaagagctgc
      601 tcgaatcagc cggtgtgttg tggaactgcg ccgaagctcc agcgccaaaa aacggtcaga
      661 gcgattcgcc cgcggttgta tgccagtcgc gttccttcag ccacgcccag ctaacggctt
      721 tcgccgaagg ccgtcccttt gactgtttcg gcaaaggctg ggagaaaaca caggcgcacg
      781 tgcgaacagc gcgcatcacg ccggggcgaa tgttgttgct cgaacaagtg actgacttcg
      841 atccgcgcgg tggtccatgg ggccgcggct acctgcgagc cgaaaccacg gtaacccccg
      901 acgactggtt cttcgaaggc cacttcaaaa acgatccgtg catgccgggc acgttgatgt
      961 ttgaagcgtg cctgcaagcg atggcgtttt acatcgccgc gatgggcttc acgatcgatc
     1021 acgacggttg ggccttcgaa cccgtgcggg acgaagcgta cgagatgcgt tgccgtggcc
     1081 aggtgacgcc gtcgagcaaa cagctcacct acgaggtctt tgtttcagaa gtcagcgctg
     1141 gtccactgcc gacggtgttt gcagatctgc tgtgcacggt cgacggtctc aaagtatttc
     1201 acgcgaagcg cgtcggcgtc cggctcgcgc cggcatggcc actcgatcac tggcaatcac
     1261 tccgacctca cgcgattcaa ctcaccggcg agccggtacc gctcaacaca ctcggcggtc
     1321 tgcgcggata cgaagacgca aacctgcccg ccgctgtaaa cggattcaaa ttcggttacg
     1381 catcactact cgcgtgcgcg tggggccgtc catccgctgc gtttggacca gattacgctt
     1441 cgctcaacgg accacgaatc gtgccgcgtc tgcctggacc accgtaccac ttcatctcgc
     1501 gcgtgacgcg catcgacgcg cagatggccg gaatgaaatc cggcggcacg gtcgaggttg
     1561 agtacgactt gcccgacgcc gcgtggtact tcgaacagaa cggcaacgca accatgccat
     1621 tctgtgtgct tctcgaagca gcgctacaac cctgcggctg gctcgcgtta tacgtcggcg
     1681 acacactcaa gaccacgggc gatctgctgt tccgcaacct cgatggaacc tgcacgcttc
     1741 acggcgaatt gacgcccgaa gcaggcacgc tacgaacaca ggtgaagctt gtgtcgctcg
     1801 tgcgaacaca cgagatgacg atcgagtcgt tcgaagtgaa ttgttatctc ggcgatcgcc
     1861 acatcctcga gttgcaagcc gtcttcggca tctttccgcc gtcggcgttc gagaaccagg
     1921 tcgggcttcc cgcaaccgat gatgatcgcg cgcgtctcaa tgcatcgtcc gatcgcttcg
     1981 tcgatctctc aagcacaccg aaccgttact tcacgggcga acttcgtctg cccgggccga
     2041 tgctcctgat gatcgatcgc gtcacaggct tcttgcccaa cggcggccgt gccgggctgg
     2101 gttacctgcg cgccgaaaaa gacgtgcgac ccggcgactg gtttttcaaa gcccacttct
     2161 tccaggaccc ggtgcaaccc ggctcactag gcctcgacgc catgtgccaa ctgttgcagt
     2221 tctatatgat cgaaaacgac ctgggcgccg gcattcctca accacgcttt gaaccgatca
     2281 tggtcggtaa tcctgtgacg tggacgttca gaggccaggt cgtgccggca aaccgcgtgg
     2341 tcaccgtcga gatggagatc gcggaagttg gcgaagatgc gcgtgggcca ttcgcgatcg
     2401 ctgaggcgtg gctttgggtc gacggcatgc gcatctatca cgctgagaaa ctcggcatgc
     2461 gcatcgtttc cgaggtaaag cgatccgatg cacaagtatt ggatcccgcg cgcgacacat
     2521 ggctcaacga tcattgccca acgtggacgg tccccgtctt gccgatgatg tcgatggtgg
     2581 atcgcattgc ggaggctgcg tctgaacacg cacaacgcga ggtcgtggcg atcgaagagg
     2641 tgcagctta
//
LOCUS       DASWTX010000009         1917 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_43551, whole genome shotgun sequence.
ACCESSION   DASWTX010000009 DASWTX010000000
VERSION     DASWTX010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1917)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1917)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1917
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43551"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..722
                     /locus_tag="VGD38_00110"
     CDS             <1..722
                     /locus_tag="VGD38_00110"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEY0726439.1"
                     /translation="LGITLESVHDEFAKVYGLSEAKGAIVMSVTKEENGQTTPAAKIG
                     IQPSDIIVEFEGSPVSNAQDLIQRVASTPVGQQITLGFLRDVNGKLEKRTATVALDER
                     PPSLTIRQGVEPTPTAPKNADPKGNALRLGITLAELTPQLLSDRSLTGLQGLYVKDID
                     PNGLVAEVRNAAGGTALAQGDVVNKINRVPVNTLADFQRVLSGLKPGDPIVLNVTRIQ
                     LQRDAKSERLLQPLIVQFTYQ"
     gene            724..>1917
                     /locus_tag="VGD38_00115"
     CDS             724..>1917
                     /locus_tag="VGD38_00115"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY0726440.1"
                     /translation="MAQAKKALSKSSGKNSSRNSASRTATKTYQNYIDGEWVASQSGE
                     MFENINPADTRDIVGRFPLSTSDDVNAAVNAAQNAFDRWRNTPAPKRAELLFRLGEIL
                     IRDKEQYTADMTREMGKVLKEAGGDVQEAIDCTYYTAGEGRRLHGFTTPAEMRDKFAM
                     CVRQPVGLCGLITPWNFPMAIPSWKLIPALICGNTVVIKPAEDTPLSTYNLVKACEEA
                     GIPPGVVNLVTGYGESVGAAMTNHNALRLISFTGSTETGRIVASACAERNAICSLEMG
                     GKNAIIVMDDADIALAVEGAIWGAFGTSGQRCTASSRLIVHKKVYKQFVTKLVEHAKG
                     LRVGNGADPKTDVGPVINADAVEKIMGYIRIGRNDDGAKLACGGKRLTRGDYAYGHFI
                     EPTVFT"
BASE COUNT          433 a          571 c          556 g          357 t
ORIGIN      
        1 atctcggaat cactctcgag tcagttcacg acgagttcgc caaggtttac ggcctgtccg
       61 aagctaaagg cgcgatcgtg atgtcggtga cgaaggaaga aaacggtcaa acgacccccg
      121 ctgcgaagat cggcatccag ccgagcgaca tcatcgtgga attcgaaggc tcgcccgtgt
      181 ccaatgcgca ggacctgatt cagcgcgttg ccagcacgcc ggtcggtcaa caaatcaccc
      241 tgggattttt gagagacgta aacggcaaac tcgaaaagcg cacagcaaca gtcgcgctcg
      301 acgaacgccc accgtcactg acaatccggc agggcgttga gccaacgcca accgctccga
      361 agaacgccga tccaaaagga aacgcgctcc gcctcggcat cacactcgcc gagttgacgc
      421 cgcagctcct ctcggaccgt tccttgaccg gcctccaggg tctctacgtc aaagacatcg
      481 atccgaacgg gctcgtcgcc gaagtccgta acgccgccgg cggaaccgcg ctcgcccagg
      541 gcgacgtggt caacaaaatc aatcgtgtgc ccgttaacac actggcagac tttcaacgcg
      601 tgctgagcgg gctcaaaccg ggcgatccaa tcgttttgaa cgttaccagg attcaattgc
      661 aacgcgatgc gaagagcgag cggctgttgc agccgctgat cgtgcagttc acttatcagt
      721 aatatggcac aggcaaaaaa agccctttca aaatccagcg gcaagaatag ttcgcgcaac
      781 agcgcgagcc gcacggccac gaaaacttac cagaactaca tcgacggcga gtgggtcgct
      841 agtcagtcgg gtgagatgtt tgagaacatc aaccccgccg acacgcgcga catcgtcggc
      901 cgttttccgc tttcgaccag cgacgacgta aacgccgcgg tcaatgcagc gcagaacgct
      961 ttcgatcgct ggcgcaacac gcccgcgccc aagcgcgccg aactcctgtt tcgcctcggc
     1021 gagattctga ttcgcgacaa agagcagtac accgccgaca tgacgcgcga gatgggcaag
     1081 gtcttgaaag aggccggcgg cgacgttcag gaagcgatcg actgcactta ctacaccgcc
     1141 ggcgaaggac gccgtttgca cggtttcacc acgcccgctg aaatgcgcga caagtttgcg
     1201 atgtgcgtgc gccagccggt tggtctttgc ggcctgatca cgccgtggaa ttttccgatg
     1261 gcgattccgt cgtggaaact gattcccgcg ctgatctgcg gcaacaccgt cgtcatcaaa
     1321 cccgctgaag acacgccgct atcgacttac aacctcgtga aagcttgtga agaggctggc
     1381 attccgccgg gcgtcgtgaa tctcgtgacg ggttatggtg aatctgtcgg cgctgcgatg
     1441 acgaatcaca atgcgctgcg tttgatctcg ttcacgggtt cgactgaaac cggccgcatc
     1501 gttgcttcgg cgtgcgccga gcgcaacgcg atctgttcgc tcgagatggg tggcaagaat
     1561 gccatcatcg tgatggacga tgccgatatc gctttagctg ttgaaggcgc catctggggc
     1621 gcctttggta cgtcagggca gcgttgtact gcgtcgtcgc gattgatcgt tcacaagaaa
     1681 gtctacaaac agtttgtcac gaagctggtc gagcacgcca agggtttgcg tgtcggcaac
     1741 ggcgcggatc cgaagactga cgttggacca gtgatcaatg ccgacgcggt cgagaagatc
     1801 atgggctaca tccgcatcgg acgtaacgac gacggcgcga agctcgcgtg cggcggcaag
     1861 cgtctgacgc gcggcgatta cgcgtacggt catttcatcg aaccgaccgt gttcacc
//
LOCUS       DASWTX010000010         2634 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_195081, whole genome shotgun sequence.
ACCESSION   DASWTX010000010 DASWTX010000000
VERSION     DASWTX010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2634
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195081"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..269)
                     /locus_tag="VGD38_00120"
     CDS             complement(<1..269)
                     /locus_tag="VGD38_00120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726441.1"
                     /translation="MSKPTPQKPAAKSSGAARLLTAAVVLPFLIASILVPWLKWLFVA
                     MAIAAMALALFEFYVLAKKRDLKPDTGAGFLAALAILVISTFPADL"
     gene            complement(270..1061)
                     /locus_tag="VGD38_00125"
     CDS             complement(270..1061)
                     /locus_tag="VGD38_00125"
                     /inference="COORDINATES: protein motif:HMM:NF011405.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HEY0726442.1"
                     /translation="MLSDFSGVVQKGSRDEALLAAIAWDRLPRHVAIIMDGNGRWAAQ
                     RGQPRIAGHKAGVEAVRAAVDTGARLGLSALTLYAFSTENWKRPRYEVDALMRMLRRY
                     IRLELDAIDKQNIKFQTIGRIGALAENVRKEIDRATERTARNKGMVLTVALNYGGRSE
                     IVDATRAAVRRLMDEGSRPDEITEERIANELYTRNLPELDLLVRTSGELRISNFLLWQ
                     SAYSEIYVTETLWPDFRRVHLLEAVVDYQRRDRRFGGLKLVVAGK"
     gene            complement(1099..1854)
                     /gene="truA"
                     /locus_tag="VGD38_00130"
     CDS             complement(1099..1854)
                     /gene="truA"
                     /locus_tag="VGD38_00130"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEY0726443.1"
                     /translation="MNYKLLLQYDGTDFHGWQSQEGLRTVQGELTRALSLIDGRDVVV
                     HGSGRTDAGVHAEGQVASVEIQREISAWKLRNAINGNVGRDVRVLEAEVVGSEFHARY
                     SALGKTYVYRVVNGPVMSPFWARYAHHEARPLNIAQMKDAAELFLGKHDWTAFSAAQS
                     DVEDRVRTITGLEISEQHDERAQSTRVEIRASADGFLRYMVRAIAGSLLAVGRGELDA
                     ASVSQAIETGVRPVIAATAPACGLTLVSVKYTD"
     gene            complement(1851..2429)
                     /gene="pyrE"
                     /locus_tag="VGD38_00135"
     CDS             complement(1851..2429)
                     /gene="pyrE"
                     /locus_tag="VGD38_00135"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR01367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEY0726444.1"
                     /translation="MDPEKVIDEFKQTGALLEGHFQLTSGLHSTVYLQCARVLQCPEK
                     AEAFGRAIAQQFADSGIELVASPAIGGIVIGHEVARALGARFIWTEREGGEMTLRRGF
                     TVSPGETTLVVEDVITTGGSTRETIEALKSAGADVIAAASIIDRSGGSVEVGVPRVAL
                     ATLRVLSVEPSACDACKMGEPAVKPGSRRANP"
BASE COUNT          560 a          851 c          688 g          535 t
ORIGIN      
        1 agatccgcgg ggaaggtcga gatcacgaga attgctaacg ccgcgagaaa acccgcgccc
       61 gtgtcgggtt tcagatcgcg tttcttagcg agtacataaa actcaaacag cgcgagggcc
      121 atcgccgcga tcgccatcgc cacaaacagc cacttgagcc acggcaccag gatcgaagcg
      181 atcagaaaag gaagtacgac ggcggcggta agaagacgtg cagctccgga actcttcgct
      241 gcgggtttct ggggagtagg ttttgacaat tattttccgg ccacaaccag cttcagcccg
      301 ccaaagcgcc gatcgcgccg ttgataatcg acaacggctt cgagcagatg aacgcggcgg
      361 aagtcaggcc acaaagtttc tgtgacgtag atctcgctgt aagcactttg ccacaggaga
      421 aagtttgaaa ttctcaattc accgctggta cgcaccagca gatcgagctc cggcaggttt
      481 cgcgtgtaga gttcgtttgc gatccgttct tcggttatct cgtccggacg gctgccttcg
      541 tccattaaac gcctgactgc ggcgcgcgtt gcatcgacaa tctcggaacg cccgccgtag
      601 ttgagcgcga cggtcaggac catgcccttg ttacgtgcgg tacgctcagt tgcgcgatcg
      661 atttctttgc ggacgttttc ggcgagcgcg ccgatgcggc cgatggtttg gaacttgatg
      721 ttttgcttgt cgatcgcgtc gagttcgaga cgaatgtaac gccgcaacat gcgcattaga
      781 gcgtcgactt cgtaacgcgg gcgcttccag ttttcggtgg aaaacgcata caaagtcagg
      841 gcgctgagac cgagacgcgc gcctgtatcg acagcggcgc gaacggcttc gacacccgcc
      901 ttatggcctg ctattcgcgg ctggccacgt tgcgcggccc aacggccgtt gccgtccatg
      961 atgatcgcga cgtgacgcgg caagcgatcc cacgcgatag ccgcgagcag cgcttcgtca
     1021 cgcgaacctt tttgaactac gccactgaaa tccgagagca tacgcgaacg agacttttga
     1081 tcatcaccac gatccgtgtc aatccgtgta cttcactgaa actaaagtaa gaccacaagc
     1141 aggggctgtt gccgcgataa ccggacgtac tccggtttct attgcttgac tgactgatgc
     1201 tgcatcgagt tcgccgcggc cgaccgccag caacgagccg gcgattgccc gcaccatgta
     1261 acgcaaaaag ccgtcggcgc tcgcgcgaat ttcgacacgc gtgctttggg cgcgttcgtc
     1321 gtgttgttcg ctgatctcca gaccggtgat cgtgcgaacg cgatcttcaa catctgactg
     1381 cgcggctgaa aacgcggtcc agtcgtgttt gccgagaaac agttccgcgg cgtctttcat
     1441 ttgcgcgatg ttgagcggac gcgcttcgtg atgtgcgtaa cgcgcccaga atggcgacat
     1501 caccggacca ttcacgacac gataaacgta ggtctttccc agtgctgaat aacgcgcgtg
     1561 aaactcactg ccgacaactt ccgcctccag cacgcgcacg tcacgtccga cgtttccatt
     1621 gatcgcgttg cgcaacttcc acgcggatat ctcgcgctga atctcgacgc tcgcgacctg
     1681 tccttccgcg tgaacacccg catccgtcct gcctgacccg tgtacaacca cgtcacggcc
     1741 gtcgatcaac gacagcgcgc gcgtcagctc tccctgaacc gtcctcaatc cttcctggct
     1801 ctgccatcca tgaaaatccg tgccgtcata ctgaagtagc aacttgtagt tcatggatta
     1861 gcgcggcgac taccgggctt caccgccggt tctcccatct tgcacgcgtc gcaagccgag
     1921 ggctcaaccg acaacactct caacgtcgcg agcgcgacgc gcggcacgcc gacttcaaca
     1981 ctcccacccg aacgatcgat gatcgacgcc gcggcaatca catccgcgcc cgcactcttc
     2041 aacgcctcta tcgtctcgcg cgtcgaacca ccggtcgtga tcacgtcttc aaccaccagc
     2101 gtcgtctcac caggcgaaac tgtaaacccg cgacgcaacg tcatctcacc gccttcgcgt
     2161 tcggtccaaa taaaccgcgc acccaacgcg cgcgcgactt catgcccgat cacgatcccg
     2221 ccaatcgccg gcgacgccac cagctcaatc cccgaatcgg caaactgctg cgcaatcgcg
     2281 cgtccaaacg cttccgcctt ctccggacac tgaagcacac gcgcacactg aagatagacc
     2341 gtgctgtgca atccgctggt cagttgaaag tgaccttcca gcaacgcgcc ggtctgtttg
     2401 aactcgtcga ttaccttttc cggatccaag ttttcacctc gtaaattcgg caggcgtgct
     2461 acaatccgag cccgaatgcc gccttatcca aacctagttt cagactccac cctcgtacag
     2521 gacacaatcg acctcttaaa cggctccggc ggacgcgcgc ccgcttccga aatcgtcgac
     2581 gctgttttca agctttcaca catcgacgac gaactcgccg gaatgctcgt ggcg
//
LOCUS       DASWTX010000011         3670 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_325181, whole genome shotgun sequence.
ACCESSION   DASWTX010000011 DASWTX010000000
VERSION     DASWTX010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3670
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325181"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            224..502
                     /locus_tag="VGD38_00140"
     CDS             224..502
                     /locus_tag="VGD38_00140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726445.1"
                     /translation="MQAGELTIGNLAVGHIEPASLTGKIGNLMARVFGCRHAELSRPF
                     SRGGRAYRSCVNCGAQRQFNLGNWQMQGDFYYGKPLNSVSPSRNALSN"
     gene            541..1368
                     /locus_tag="VGD38_00145"
     CDS             541..1368
                     /locus_tag="VGD38_00145"
                     /inference="COORDINATES: protein motif:HMM:NF018129.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GvpL/GvpF family gas vesicle protein"
                     /protein_id="HEY0726446.1"
                     /translation="MTGAGPNKNGYYVYCVAESAAAAQLDAASFPVAIEDDTKLEWVT
                     ANDLAALTSSVPLESYGEEALAAHLADATWTAVRAMRHETVVEYVAKRTSLVPLRFGT
                     IYLERSGIERMLAEKGRELAQIIERLRGREEWGVNVYSDRATLLASITSVSPRLRELA
                     QQAEAASPGQSYLMQKKIEALRVDEARATLNQIVDEIEKTLTEQADDAKRLRILKVEA
                     TEHGELKAKFAFLVRRAGFEEFRAAAERLAEAHLSAGVRLELTGPWPAYNFTVFEGA"
     gene            1365..1610
                     /locus_tag="VGD38_00150"
     CDS             1365..1610
                     /locus_tag="VGD38_00150"
                     /inference="COORDINATES: protein motif:HMM:NF012944.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gas vesicle protein"
                     /protein_id="HEY0726447.1"
                     /translation="MSSPFDQVIISESGGELEESELSLLETLDHVLNRGLVIAGEITI
                     SVADIDLVFLGLNVLLSSVETANDVLRRRQEAGDASA"
     gene            1607..2305
                     /locus_tag="VGD38_00155"
     CDS             1607..2305
                     /locus_tag="VGD38_00155"
                     /inference="COORDINATES: protein motif:HMM:NF018129.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GvpL/GvpF family gas vesicle protein"
                     /protein_id="HEY0726448.1"
                     /translation="MKLYAYCLTEGIDSLPESLNGINGPTVRLLNLNDFSLLVSDFAG
                     DTVPVNRDNALAHAAVVRSVLDQTTPLPFRFGTLVTQQQLETYVTTGRDALRAKLELV
                     RGCVEMSVKIIWDRAWTEEPPATEPDKPGTAFLVEKRRELLGSQTRAEEANRIADWLT
                     ERLGEAVREKEFKANSTDKLLLTAAHLVERSRVDEYRSRLKNARLERPELHFLATGPW
                     PPYSFANINLEFKS"
     gene            2389..2685
                     /locus_tag="VGD38_00160"
     CDS             2389..2685
                     /locus_tag="VGD38_00160"
                     /inference="COORDINATES: protein motif:HMM:NF016977.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gas vesicle protein K"
                     /protein_id="HEY0726449.1"
                     /translation="MEQLRCVTDSLPSRINIDAQSVEQGLAKLVLTLIEFIRRLLEKQ
                     AVRRMEGGDLSPEQIEELGLALMRLEAKLHELKTQFGLTDEDLNLDLGPIGRLI"
     gene            2786..3172
                     /locus_tag="VGD38_00165"
     CDS             2786..3172
                     /locus_tag="VGD38_00165"
                     /inference="COORDINATES: protein motif:HMM:NF012944.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gas vesicle protein"
                     /protein_id="HEY0726450.1"
                     /translation="MSTERSTLITARPPGLVDVLDRILDKGLVIAGDIKVSLANVELL
                     TLQIRLLVCSIDKAEQIGLNWWRYDTNLTTRAERAEAENVELRERLSELELEIRKLSA
                     AAAVSGSEPVTTKRATTRKTTKKRRG"
     gene            3278..3559
                     /gene="gvpA"
                     /locus_tag="VGD38_00170"
     CDS             3278..3559
                     /gene="gvpA"
                     /locus_tag="VGD38_00170"
                     /inference="COORDINATES: protein motif:HMM:NF006874.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0012506 - vesicle membrane [Evidence
                     IEA];
                     GO_component: GO:0033172 - gas vesicle shell [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gas vesicle structural protein GvpA"
                     /protein_id="HEY0726451.1"
                     /translation="MAVERAPGGTSLIDVLDRVLDKGIVIDAWVRISLVGIDLITIEA
                     RVVVASIDTYLKYAEAVGLTPAVSRPVITGGTSEAETEPRRRVSVEVEK"
BASE COUNT          830 a          973 c         1109 g          758 t
ORIGIN      
        1 catcgtagat gacgggtagt aaaagatcaa ccgcggcccg gtcaccgttc gacaactcga
       61 tcagtagttt tgtgacgttg tcagtggggt gtttgctcaa tcgttaattc tctcccgcgc
      121 gcggcgtaag tataagacag aaataacgct acagaaaggt ggccctattc gaattttctt
      181 tgcgcgttat ccagacgaag gcaatttcgg aaggggtgac actatgcaag ctggtgaatt
      241 aacaatcggg aacctggcgg tcgggcatat cgagccggca tctttaacgg gaaagattgg
      301 caatttgatg gcgcgcgtgt ttggttgccg gcacgccgaa ctcagccgtc ctttctcgcg
      361 tggcggacgc gcatatcgtt cgtgcgttaa ttgcggggcg cagcgccagt tcaatctcgg
      421 aaactggcag atgcagggcg atttctatta cggcaagccg ctcaattccg tgtcaccctc
      481 ccgcaacgcg ctctccaact aacactcctc ctgtatataa tgcccggtca tagcgcccct
      541 atgaccggag ccggaccaaa caaaaacgga tactacgtct actgtgtcgc ggaaagtgca
      601 gctgccgcac agttggacgc agcatcgttt ccggtagcca tcgaagacga cacgaaactg
      661 gagtgggtga cggcgaacga tctcgccgcg cttaccagca gcgtgccgct cgagagctat
      721 ggcgaggaag cactcgccgc gcatctcgcc gacgcgacct ggaccgccgt gcgcgcgatg
      781 cgtcatgaga cggtggtgga gtacgtcgcg aaacgtacca gcctcgtgcc gctacgtttt
      841 ggcacgatct atctcgaacg atccggaatc gagcgcatgc tcgccgaaaa gggaagagag
      901 ctggcgcaga tcatcgagcg cctgcgtggg cgcgaggaat ggggcgtcaa cgtctattcc
      961 gatcgtgcga cactgttggc gagtatcacg tcggtgagtc cgcggctgcg tgagttagct
     1021 cagcaggcgg aagcggcgtc gccggggcag tcgtacctga tgcagaagaa gatcgaagcg
     1081 ctgcgggttg acgaagcgcg tgctaccttg aaccagatcg tcgacgagat cgagaagacg
     1141 ttgaccgagc aggcggacga tgcgaaacgt ctgcggatct tgaaagtcga agcgactgag
     1201 cacggcgaac tgaaagcgaa gttcgctttt ctggtgaggc gtgccgggtt tgaagagttt
     1261 cgggcggcgg ccgagcggct ggcggaagcg catctgagcg ccggcgtgcg tttggagttg
     1321 accggtccct ggccggcata taacttcacg gtattcgagg gcgcatgagt tctcctttcg
     1381 atcaggtcat cattagcgag agtggcggcg agctcgaaga atccgagctg tcgttgctcg
     1441 aaacgctcga ccacgtcctg aaccggggcc tcgtcatcgc gggcgagatc acgatctccg
     1501 ttgccgacat cgatctcgtt tttctcggtc tgaacgtgct gctcagttcg gtcgagacgg
     1561 caaatgatgt cctgcgcagg cgccaggaag ccggcgacgc ctcagcatga agctctacgc
     1621 ttactgtctg accgaaggca tcgattcgct gcccgagtct ctcaacggca tcaatggccc
     1681 cacagtccgt ttgctgaact tgaatgattt ttcgctgctc gtgagcgatt tcgccggcga
     1741 caccgtgccg gttaaccgtg acaacgccct cgctcacgcg gctgtcgtgc gaagtgtcct
     1801 ggatcaaaca acgccgttgc ccttccggtt cggcacgctc gtaacccaac aacaacttga
     1861 gacctacgtg acaacggggc gtgacgcact tcgggccaaa ctggaactcg tgcgcggttg
     1921 cgtcgagatg agcgtcaaga tcatctggga ccgtgcgtgg actgaagagc ctccggccac
     1981 agaacccgat aagccgggca ccgcttttct cgtcgagaag cggcgggagc tgttgggcag
     2041 tcaaacccgc gccgaagagg cgaacaggat cgccgattgg ctgacggagc gcctgggtga
     2101 ggccgtaagg gagaaagaat ttaaagccaa ttcgacggac aaattgctac taaccgctgc
     2161 gcacctggtg gaacggagca gggtcgatga ataccgatcg cggctgaaaa acgcccggct
     2221 cgagcgcccg gaactgcact ttcttgccac cggaccgtgg ccgccgtaca gtttcgccaa
     2281 cataaacctt gagtttaaat cctagttcgg agtaagctta tggagctttc ccccgaaaac
     2341 ccccttccgg ctgagccgga gatagaaact tcgcatgtag aggagttcgt ggaacaactc
     2401 cgttgtgtca ccgactcgct accctcgcga ataaatattg atgcgcaaag cgtcgaacag
     2461 ggtctggcaa agctggttct aactctgatc gagttcatcc gccgcctact cgaaaagcag
     2521 gctgtacgca ggatggaagg cggggatctc tcaccggaac agatcgaaga gttgggattg
     2581 gcgctcatga ggttggaagc taagctccac gagctgaaaa ctcaatttgg gttaacggac
     2641 gaagacctca atctcgatct tggtccgata gggcgcctga tttagcagtt tgccacaaaa
     2701 agcggtacga agcagcgtgt tacctatggt ggcggccatt ttgagctttt tgagtaaagc
     2761 cgcttcctga gtgtggaggg cgaaagtgtc cactgagcgg tctaccctga taacggcccg
     2821 tcccccgggt ctggttgatg ttctcgatcg tattcttgac aaaggattgg tgatcgccgg
     2881 cgacatcaag gtgtcgctcg caaacgtcga actactcacc ctgcagattc gattacttgt
     2941 ctgctccatc gacaaggccg aacagattgg gctgaactgg tggcgttacg ataccaatct
     3001 gacaacgcgg gccgagcgtg ccgaagccga aaatgtcgag cttcgggaac gcctgtccga
     3061 actcgagctg gaaattcgca agctgagtgc ggcagcggca gtttctggta gtgaaccggt
     3121 aacaacaaaa cgggcgacta cgcgcaagac tacaaagaag cgtcgtggtt agaccggatt
     3181 acatgacgaa caagggtgtt gtgagcaagg ggcgccgtca gtcctcgcgc aagcagtatg
     3241 ctggtttttc caaactcaag aaaaggaacc gaagcaaatg gctgtcgaaa gagcaccagg
     3301 cggtactagt ttaatcgacg ttctcgatcg cgtgctcgac aaaggtatcg tgatcgatgc
     3361 gtgggtccgc atatcgctgg tgggtattga cctcattaca attgaagcgc gcgttgtggt
     3421 cgcctcgatt gatacgtact tgaagtacgc cgaagcagtg ggtctgacgc cggcagtctc
     3481 ccgaccggtt atcacgggtg gcacgtcaga agcggagacc gaaccgcggc ggcgggtttc
     3541 ggtagaggtc gagaagtaga aacgagagcc ttgcgtggga tttgataccc gacttcaggt
     3601 ttagaagttc agcaatatgg gagaagttcc ctcagagtta gctcttaaag ctgccccatc
     3661 gttagcggaa
//
LOCUS       DASWTX010000012         2747 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_368567, whole genome shotgun sequence.
ACCESSION   DASWTX010000012 DASWTX010000000
VERSION     DASWTX010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2747
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368567"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1368)
                     /locus_tag="VGD38_00175"
     CDS             complement(<1..1368)
                     /locus_tag="VGD38_00175"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY0726452.1"
                     /translation="MKIKNLLPLFLLMIAPFAVADSQTSNKGASNDWLQFRGPNGSGV
                     AEGSVLPAEFGATKNLVWKVSVPFARSSPVVTADRVFLTAAEGDKLSTFAIDRKTGKV
                     LWRRDVVRARHMPIYKANDGASPTPVSDGKNVFVFFAELGLISYGPDGKERWRVPLGP
                     FNSFYGMGGSPVLAGNTLVMVCDQRTNSFIVAVDTRDGKVLWQKSRPHYEAYSTPAFY
                     KPKDGPGQVIVLGSHSVDAYSVDKGERLWWVTRTGAYPKGVPLLGTDMVYVVGDGGDD
                     PFLPPFDETLKGDTNKDGKLGRDEIKGSAEFLEHFGWLDTNNDGYVERSEYDFVRNST
                     TGGHGLTAIRLTGQGDLTSSNVVWRVTKSYPSIPAPLLYRGVMYLMKEGGIVSSLDPV
                     SGQVLKQGRTPQALEEYYASPVAADGKVFVISASGKVSVLKAGAQWDIIATSDLGEEV
                     WATPAI"
     gene            1457..>2747
                     /locus_tag="VGD38_00180"
     CDS             1457..>2747
                     /locus_tag="VGD38_00180"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEY0726453.1"
                     /translation="MELRPQAHDWLTGGGELGQLIRGYDWSRTSLGPIESWPQSLRSA
                     VSILLPSKAQIAMFWGPDLIALYNDAYRPVLGDKHPGALGLPVRDVWSELWETGLRGL
                     FEGVLQTGEAFWASDWPFMLERFGFPEETFFDISYDPVRDESGQVAGLFCIVSESTAR
                     VISERRLRTLRDLALVATAEAKSVEDACRSVAEILSGNPHDIPFALIYLLDKSGKSAT
                     LAGASGLEPGTYAAPISVGVDASCWSFDAVMQTNRATEITDLIECCCELPAGVWPEPP
                     HTAMVMPIGASGQDRAVGFLVAGVSPRRPLDDQHRAFFELLTTQISTTVANARAYEEE
                     RRRAESLAELDRAKTAFFSNVSHEFRTPLTLMLGPVADLLGELDGEVSAEQRERLDIA
                     YRNGLRLQKLVNTLLDFSRIEAGRVQASYEATDLASLT"
BASE COUNT          544 a          809 c          796 g          598 t
ORIGIN      
        1 gatcgcgggc gtggcccaaa cctcttcacc gagatcgctt gtcgcgatga tgtcccattg
       61 cgcgccggct ttgagcacgc tgactttacc gctcgcgctg atgacgaaga ctttgccgtc
      121 ggcggcgaca ggtgatgcgt aatactcctc gagcgcttgc ggcgtgcgtc cctgtttcag
      181 tacctgccca ctcaccggat cgagactgga aacaatcccg ccttctttca tcaaatacat
      241 cacgccgcga tagagcaacg gcgcgggtat gctcggatag gatttcgtga cgcgccaaac
      301 aacgttcgaa gacgtaaggt cgccctggcc cgttaggcga atcgcagtga gcccgtgacc
      361 gcccgtagtt gaattgcgaa cgaagtcata ttccgaacgc tcgacgtatc cgtcgttgtt
      421 cgtgtctaac cagccaaagt gttccaaaaa ctcagcgctg ccctttatct catcacgtcc
      481 gagctttccg tccttgtttg tatcgccttt gagagtctcg tcaaacggcg gcaggaacgg
      541 atcatcacca ccgtcgccca ctacgtagac catgtcggtt cccagtagcg gcacaccttt
      601 cggatacgca cccgttctcg tcacccacca caaccgctcg cctttatcga cggaataggc
      661 gtcgaccgag tgtgagccga gaacgatcac ctgccctggt ccatccttcg gtttataaaa
      721 ggcgggcgtg gaataagctt cgtagtgagg acggctcttt tgccaaagca cttttccatc
      781 gcgcgtgtct accgcgacga tgaaagagtt cgttcgctga tcgcacacca tcacgagcgt
      841 gttgcccgca agcaccggcg atccgcccat gccgtagaaa ctgttgaacg gaccgagcgg
      901 cacgcgccaa cgctccttgc cgtctggtcc atacgagatc aaaccgagtt cggcaaaaaa
      961 tacgaacacg ttctttccat cgctcacggg agttggcgag gcgccgtcgt tcgccttgta
     1021 gatcggcatg tgccgcgcgc gcacgacgtc gcggcgccac aagacctttc ccgtcttccg
     1081 atcgattgcg aacgtgctca gtttgtcgcc ttcagcggcg gtgagaaaca cccgatcggc
     1141 tgtgacgacg ggcgacgagc gcgcgaaggg aactgacact ttccaaacca gattctttgt
     1201 cgcaccaaac tccgctggga gcacggagcc ctcggcaacg ccgctgccgt tcggcccgcg
     1261 gaattgcagc cagtcgttgc tagcgccttt gttgctcgtt tgggagtcgg caacggcaaa
     1321 cggcgcaatc attagaagaa acagtgggag taaatttttg atcttcatga tttgtgttcc
     1381 tggcaaagag ttgttgtaga attagcgaga cttcgattcc cccgcattgt aaatccccct
     1441 ttatcagata atccagatgg aattgcgtcc gcaagcacat gactggctga ccggtggcgg
     1501 cgagttgggc caactgattc gcggctacga ctggtcgcga acttcacttg ggccaatcga
     1561 atcatggccg caaagcctgc gcagcgccgt cagcatactg ctgccgtcga aggcgcagat
     1621 tgcgatgttc tggggccccg acctgatcgc actttacaac gatgcatacc gcccggtgct
     1681 gggagacaag catcccggcg cgctcgggct gccggtgcga gacgtatgga gtgagctttg
     1741 ggaaacaggc ttgcgaggtt tgttcgaagg cgtgctccaa accggagaag ctttctgggc
     1801 cagcgactgg ccgttcatgc tggaacgatt tggttttccc gaagagactt tcttcgacat
     1861 ctcttacgac ccggttcgcg atgaaagcgg acaggttgcc ggactcttct gcatcgtcag
     1921 cgaatcgacg gcacgcgtga tcagcgagcg gcgtctgcgc accttgcgcg atctagcgct
     1981 ggtcgcgaca gccgaggcga agtctgtaga ggatgcgtgt cgcagcgtcg cggagattct
     2041 ttccggcaat ccgcacgaca ttcctttcgc gctgatctac ctgttggaca aatcgggcaa
     2101 gagcgcgact ctcgccggtg cgtcgggatt agaaccggga acatacgccg cgccgatcag
     2161 tgtcggtgtc gatgcgtcgt gctggtcgtt cgacgcggtc atgcaaacga acagggctac
     2221 cgagatcacg gacttgatcg agtgttgctg tgagttgccg gccggtgtct ggcccgagcc
     2281 gccgcacacc gcgatggtca tgccgatcgg cgcgtcggga caggaccgcg ctgttggttt
     2341 tttggttgct ggagtttctc cgcggcggcc tttggacgat cagcaccgcg cgttctttga
     2401 actgttgacg actcagattt cgactaccgt ggcaaatgcg cgcgcttacg aagaagagcg
     2461 ccgccgtgct gaatcgctcg ccgaactcga tcgcgcgaag acggctttct tctcgaacgt
     2521 cagtcatgag tttcgcacgc cgctgacgtt gatgcttgga ccagtggccg atctgttagg
     2581 cgaactggac ggcgaggtgt ccgcggaaca acgcgaacgt ctcgacatcg cttatcgcaa
     2641 cggtctgcgg ctgcagaaac tcgtcaacac gctgctcgac ttctcgcgta ttgaagcggg
     2701 ccgcgttcag gcttcttacg aagctaccga cctggcgagt ttgaccg
//
LOCUS       DASWTX010000013         2098 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_86776, whole genome shotgun sequence.
ACCESSION   DASWTX010000013 DASWTX010000000
VERSION     DASWTX010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2098
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86776"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..661)
                     /locus_tag="VGD38_00185"
     CDS             complement(<1..661)
                     /locus_tag="VGD38_00185"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HEY0726454.1"
                     /translation="MKRKLSSLTGIAALVIMLIAPVCVADKSSSRLLKQQERYTLSLE
                     LEFTKKEQNALEHAISVLFDVGPNGYATGFLVGNGLVMTAYHVISGNLSTTKKVMLGF
                     KSSDELAVKVYVDGCRAKVIKVDKEADLALLEMCRNSRDAKAPTFQTAPVKDDKLFLI
                     ARPHGDKVVSHGSFYGNYMLGNQEYWSVKIDSRDGFSGSPVYNSKAEVVGVFSGYDWS
                     QK"
     gene            complement(779..>2098)
                     /locus_tag="VGD38_00190"
     CDS             complement(779..>2098)
                     /locus_tag="VGD38_00190"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004151 - dihydroorotase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEY0726455.1"
                     /translation="IDPSQQVNAGKNLLIENGRVLDFLNRGEAAPEDAHVLDATGLVV
                     APGFIDLHTHLREPGQEYKETVATGAAAAVAGGWTSICAMPNTDPINDNPAVTRFILD
                     QAKAAELANVFPIGAITKGSGGKELAEMGEMKKAGIVAVSDDGRPVPTSGMMRRAMEY
                     ARGFDLPVIDHCQDQSLSAGGVMHEGRWSLILGLKGMPAAAEEVDALRDCVLAKLTGA
                     RVHIAHVSTRGAIEAVRQAKNDGLLVSCEVTPHHWTLTDEAVAEYDTNTKMSPPLRSR
                     DHVDAILAAMKDGTIDAIATDHAPHHQDEKGLEFDQAPFGITGLETAVGLAFDLVHQG
                     LIDLERVVEMCATNPARIFGLTERGSLKKGSHADITILDPQLEWVFDVNRSKSKSRNT
                     PFNGRTMQGAAVATIVGGRLVYLHPDYTRLNEPQQRGASASGHAAKK"
BASE COUNT          406 a          619 c          582 g          491 t
ORIGIN      
        1 gcttctgcga ccagtcgtag ccgctgaaaa cgcccaccac ttcagccttc gagttgtaaa
       61 cgggactgcc cgagaagcca tcgcggctgt cgatcttcac cgaccagtat tcctgattgc
      121 ccagcatgta gttcccgtaa aagctgccgt gactcacgac tttgtcacca tgcggccgcg
      181 cgatcagaaa gagtttgtcg tccttaacgg gcgccgtctg gaacgttgga gccttcgcgt
      241 cccgcgaatt gcggcacatc tcgagcaaag cgagatcggc ttccttgtcc actttgatca
      301 ctttggcccg acagccgtct acgtaaacct tcaccgcaag ctcgtcggag gacttgaaac
      361 ccagcatcac cttcttggta gtgctcaggt ttcccgagat cacgtgatag gcagtcatta
      421 caagcccatt gcctaccaga aaccctgtcg catagccgtt tggtcctaca tcaaacagga
      481 ccgaaatcgc atgctccagg gcattttgtt ctttcttggt aaattccaat tccagcgaca
      541 aggtatagcg ctcttgttgc ttcagcagcc tggacgagct tttgtcagct acgcacacag
      601 gagcgatcag cataatgacg agtgcggcaa taccggtaag gctgctgagc ttcctcttca
      661 tgtgacctcc gtggtgttgt aggggtctag gaaatattta gtttgggaac aggtccggag
      721 cattttaggg ccgcgtctcc ggattggcaa tgattttgtg gtgtcggaag tgtgggtttt
      781 attttttcgc ggcgtgtcca ctcgcagacg cgccgcgttg ctgcggttcg ttgaggcgag
      841 tgtaatcagg atgcagatag accaaccggc cgcccacgat cgtggctaca gcagcgcctt
      901 gcatcgtgcg tccgttgaaa ggcgtgttgc ggcttttcga tttggaacgg ttaacgtcga
      961 acacccattc gagttgcgga tcgagaatcg ttatgtccgc atgcgaacct ttcttcagcg
     1021 aaccgcgttc ggtcaaaccg aagattcgcg cgggattcgt cgcgcacatc tcgacgactc
     1081 gttccaggtc gattagtccc tgatgaacca gatcaaatgc gaggcccaca gccgtttcaa
     1141 gacccgtgat gccaaacggc gcctggtcaa actccaaacc cttttcatcc tgatgatgcg
     1201 gcgcgtggtc ggtcgcaatc gcgtcgatcg tgccgtcttt catcgcggca agaatcgcgt
     1261 caacgtgatc gcggctgcgc aacggcgggc tcatctttgt attcgtgtcg tactccgcga
     1321 ccgcttcgtc agtcagcgtc caatgatgcg gcgtgacttc acagctaacc agtaaaccgt
     1381 cgttcttcgc ttgtcgcacg gcttcgatcg cgccgcgtgt cgaaacgtga gcgatgtgta
     1441 cgcgcgcgcc ggtcagcttt gcgagtacgc agtcacgcag ggcgtcaact tcttccgccg
     1501 ccgccggcat tcctttgaga ccgagaatca acgaccaacg gccttcgtgc atcacgccac
     1561 ccgcgctcaa cgactgatcc tggcaatgat cgatcaccgg aagatcgaaa ccgcgcgcgt
     1621 actccatcgc gcgccgcatc atgcccgagg tcgggaccgg acggccgtca tctgaaaccg
     1681 cgacgatccc ggctttcttc atctcgccca tctccgcgag ttctttgccg ccactgcctt
     1741 tcgtgatcgc gccgatggga aacacgttgg cgagttctgc tgcctttgcc tggtcgagga
     1801 tgaaacgcgt gaccgcagga ttgtcgttga tcggatctgt gttcggcatc gcgcagatgc
     1861 tggtccaacc gcccgcgact gccgctgctg cgcctgtggc cacagtctcc ttgtactcct
     1921 gacccggttc gcgtagatgt gtgtggaggt cgatgaaacc cggcgcgacg acgaggcccg
     1981 tggcgtcgag gacgtgtgcg tcttccgggg cggcttcgcc gcgattaaga aaatcaagaa
     2041 cgcggccgtt ttcgatcagc aaattctttc cggcgttgac ttgttgagac ggatcgat
//
LOCUS       DASWTX010000014         1693 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_260156, whole genome shotgun sequence.
ACCESSION   DASWTX010000014 DASWTX010000000
VERSION     DASWTX010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1693
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260156"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            64..963
                     /locus_tag="VGD38_00195"
                     /pseudo
     CDS             64..963
                     /locus_tag="VGD38_00195"
                     /inference="COORDINATES: protein motif:HMM:TIGR03866.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent catabolism-associated
                     beta-propeller protein"
     gene            1183..>1693
                     /locus_tag="VGD38_00200"
     CDS             1183..>1693
                     /locus_tag="VGD38_00200"
                     /inference="COORDINATES: protein motif:HMM:NF018455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HEY0726456.1"
                     /translation="MSKVNRRNRTNNAVVGLQKERTGIPGFDEITGGGLPAGRPTLVC
                     GSAGAGKTLFAMEFLVRGALMDDEPGVFMSFEETTDELATNVSSLGFDVKQLIADKKL
                     ILDYVFIERSEIEETGEYDLEGLFLRLGHAIDQLGAKRVVLDTLEALFSALPNEAIIR
                     AELRRLFRWL"
BASE COUNT          388 a          528 c          452 g          325 t
ORIGIN      
        1 tttatccctt tcgttttggc ctgagctggc tgtagcaacg cttcaacggg cccgttcgcc
       61 tacgtaacca atgagcgcga cggcaccatc accgtgatcg acaccgccac ggatcgcgtc
      121 tactcgacga tcgaagtcgg cgggcgttta cgaggcattc aactcagcca ggaccgcaaa
      181 cgaatctggg ttgcaatcag ctacccgacg gaccaaacag gcgaagaaga cactgttgcc
      241 gagatcgatg cgaacggaac catactcgcc aggtacaaat gcggcagcga tccggaaaac
      301 ttcgtgctca acaaagcggc cgcgaagctc tacatcgcga atgaagacgc aggcacggct
      361 tcgatcaccg atgtaagagc gaatcgcgtg attgcgacct ttccggtcgg gctggaaccc
      421 gaaggcgccg cgatcagtcc tgacgggcgt tgggtttaca tcacttccga aagcagcagc
      481 actgtcagcg tgatcgacac gcagacgaac caggttgtta atacttttct cgtcggcgcg
      541 cgtccgcgtg aggccgtctt taccgctgac agttcgcgcg cgtacgtcac ggctgaaaac
      601 ggcaacaccg tttccgtcgt cgacacgtcg aaccaccagg tcatcaagac gatcgagttg
      661 ccgcgcggtg atggtccctc gcaactgaaa ccgaagggcg tggtcgtctc gccggacggc
      721 aaacgggttt acgtcgcgac cggaggtgga aacagcgtcg ccgtgatcga cggcgaacaa
      781 ctgacgctgc tgacgttgat tcccgtcggc cagcgcccct ggggcatcgg cctaaccccc
      841 gacgggcgta agctttacac cgccaacggc ctgtcagacg acgtctccgt catcgacacc
      901 gccaccaaca aagtaatcac ctccatcaaa gccggcgacg ctccctgggg cgtcgccctt
      961 tgagcgcccg ttttgagttc agcctttagg ctgtctgtcc ggcaagctaa agcttgaact
     1021 cagaacgggc cgcactgttt ctgaccgact aaaaccatac atttcgggtc tacccgccaa
     1081 aagccaagtt gtgttataaa caggcggcaa ccccctcgtt gaaccaaatt ccccttaaaa
     1141 ctagctatct ggcattcgtg tgtcaggagg tacccgctta gtgtgagcaa agttaaccgt
     1201 cgtaaccgaa cgaacaacgc tgtcgtcggt ctacaaaaag aacgaaccgg cattcccggc
     1261 ttcgacgaaa ttaccggcgg cggactgccc gccggacgtc caacgctcgt ctgcggcagc
     1321 gccggcgcag gcaaaactct gttcgcaatg gagtttctcg tccgcggcgc gctgatggac
     1381 gacgaacccg gcgtctttat gtcgtttgaa gagacgaccg acgaactcgc caccaacgtc
     1441 tcgtcactcg gcttcgatgt caaacaactg atcgccgaca agaaactcat tctcgattac
     1501 gtgttcatcg aacgctccga gatcgaggaa accggcgaat acgatctcga aggactcttt
     1561 ctccggctcg gacacgcaat cgatcaactc ggcgccaaac gcgtcgtgct cgacaccctc
     1621 gaagcactct tctccgcgtt gccgaacgaa gcaattatcc gcgccgaact gcgccgattg
     1681 ttccgttggc taa
//
LOCUS       DASWTX010000015         2932 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_238417, whole genome shotgun sequence.
ACCESSION   DASWTX010000015 DASWTX010000000
VERSION     DASWTX010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2932
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_238417"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            126..1661
                     /locus_tag="VGD38_00205"
     CDS             126..1661
                     /locus_tag="VGD38_00205"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0043138 - 3'-5' DNA helicase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecQ"
                     /protein_id="HEY0726457.1"
                     /translation="MSALVPKVTRELTRMRRTLRDTFGLDKLRRGQAEVIRSVLEGNN
                     TLAIMPTGAGKSLCYQLPSLHLPGTTVVVSPLISLMKDQVDKLRDAGLEAAQLNSALT
                     TQEHDENLEQIKTEQSDFIFITPERFTDQEFLAELRRKTINFVVIDEAHCISEWGHDF
                     RPAYLSLGAAVKTLGSPPVLALTATATTEVTADIEKQLDLGKLQIVKTGIYRPNIYFE
                     VKRVTNEREKHEELVRILNENEGVGIIYAATVKTVEALTDWLKSFDFKIEKYHGRMKA
                     SDRKRNQDAFMNDELKAIVATNAFGMGIDKPDIRFVVHYQMPGSLEAYYQEAGRAGRD
                     GEAATCSLFYQLEDRRTQQFFLGGKHPKFDDILGVYQTLETLNAAETPVGLATVQEHA
                     NTVSDTKVRVVLSLLKEMNVVKELRGLKFRLLRADVTQPELEYLSRMSEDKVNKDKEK
                     LERMMQYGQSARCRWRLLHDYFAEEMEEERCGNCDNCVHTLEEQILLPESRCLTGSSG
                     LPC"
     gene            1655..1867
                     /locus_tag="VGD38_00210"
     CDS             1655..1867
                     /locus_tag="VGD38_00210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726458.1"
                     /translation="MLVTVVAAWMVGSQRKFKRNWGFWLFLFSNVLWIVWGWHDGAYA
                     LIVLQVCLAFLNIRGALKNRNPETAS"
     gene            2083..2376
                     /locus_tag="VGD38_00215"
     CDS             2083..2376
                     /locus_tag="VGD38_00215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726459.1"
                     /translation="MAKLHSSMALNTPGLYEKMNESMIDRLQNSGEPAFPNRGDGLYD
                     TNSRLSERGAQDRFVLEHSLYQQTRLHPALTATLAVAGGFALAAWLGSRVRPA"
     gene            complement(2390..>2932)
                     /locus_tag="VGD38_00220"
     CDS             complement(2390..>2932)
                     /locus_tag="VGD38_00220"
                     /inference="COORDINATES: protein motif:HMM:NF040138.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HEY0726460.1"
                     /translation="TGRAWRTVPNGAIRGNRNVVRKISFPAIETNKIRVVVLNALGGE
                     SRITEIEAWHVNDLPQAKIAIAGKRNTKNITKDSAVNFVTEVFDLDGKIHEYELDFGD
                     NSNTYEWEFDHQKPGNKPKLTHRHVYEKEGTYAVKLRLVDDSNEANETTMVVNVVAPP
                     VRPEPTANPTARNRSRQRRN"
BASE COUNT          655 a          783 c          833 g          661 t
ORIGIN      
        1 cccgcgagat catcagacga acaatcgagt tcatcaaaac gcacggttga ttagtggcac
       61 ccgtcttgcc gagagcctct cgcgcgtgca aaggtgttcc aaacaagtgc acgtcgagaa
      121 tttttatgag tgctcttgtt ccaaaagtca cacgcgaact caccaggatg cggcgaacgc
      181 tgcgcgatac tttcggcctc gataaactcc gccgcggcca ggctgaagtc attcgatcgg
      241 tactcgaagg caacaacacg ctcgcgatca tgccgacggg agcagggaag tcgctctgct
      301 atcaactgcc gtctttacac ctgcccggca cgaccgtggt cgtgtcgccg ctcatctcgc
      361 tcatgaagga tcaggtcgat aagttacgag atgctggtct cgaagccgcg cagttgaaca
      421 gcgcactgac aacgcaggag cacgacgaga acctggagca gatcaagacc gagcaaagcg
      481 attttatttt tattacgccg gagcgtttca ccgatcagga atttctcgcc gagctgcgcc
      541 ggaaaacgat caacttcgtc gtgatcgacg aagcacactg catctccgaa tggggtcacg
      601 actttcgccc ggcttacctg tctctcggcg ccgctgttaa gacgctcggc tcgccgcccg
      661 tattggcttt gaccgctact gccacgactg aagtcacagc ggacatcgag aagcaactcg
      721 atctcggaaa acttcaaatc gtgaagacgg gtatctaccg gccgaatatt tatttcgaag
      781 tgaagcgagt gacgaacgag cgtgagaagc acgaagagct cgttcgcata ctcaacgaaa
      841 acgaaggcgt cggcattatc tatgcagcga ctgtgaaaac ggtcgaagca ttaacggatt
      901 ggttaaagag tttcgacttc aagatcgaga agtaccacgg gcgtatgaaa gcaagcgatc
      961 gcaagcgcaa tcaggacgcg tttatgaacg acgaattgaa agcgatcgtg gcgacgaacg
     1021 ccttcggtat gggcatcgac aagcccgaca tccgtttcgt ggtccattac cagatgccgg
     1081 gttcgctcga agcctactat caggaagccg ggcgtgccgg ccgtgatggc gaagcggcga
     1141 cgtgcagtct cttttatcaa ctcgaagacc gacgcacgca gcagttcttt ctcggcggca
     1201 agcatccgaa gttcgacgac attctcggcg tgtatcaaac gctcgagaca ctcaatgcgg
     1261 cagagacgcc ggttggcttg gcaaccgtac aggaacatgc aaacacagtg agcgacacaa
     1321 aggtgcgcgt ggtgttgtcg ctgctgaagg aaatgaacgt cgtgaaggag ttgcgtggtc
     1381 tcaagtttcg tctcttgcga gctgacgtga cgcaaccgga actcgaatat ctctcgcgca
     1441 tgtccgaaga caaagttaac aaggacaagg aaaagctcga gcgcatgatg cagtacgggc
     1501 agagcgcgag gtgccgttgg cgtctgttgc acgactactt cgccgaggag atggaagagg
     1561 agcgctgcgg aaattgtgac aactgcgttc atacgctgga ggaacaaatc ttattgccgg
     1621 agtcgagatg cttgactgga tccagtggcc tgccatgcta gtcaccgtag ttgctgcgtg
     1681 gatggttggg tcgcagagaa agttcaaacg caactggggt ttctggttgt ttctgttcag
     1741 caacgtgctc tggatcgtgt ggggctggca cgacggcgcg tatgcactca tcgtccttca
     1801 ggtttgcctt gcttttctaa acattcgcgg agcgttgaag aatcgcaacc cggaaacggc
     1861 ttcctgacat cctcacactc tcagaagacc ttcgcgacaa ctgcgccgtc tgttcgaaac
     1921 gaacgtgtgg ggcgttgtcc acggctcgcg tatcgcggtc gagaatctgc gccaccgcgg
     1981 cggcgcgttg atcaatgtgg gcagcgaaac gtcagacgca gcgtcgccga agcaatcctg
     2041 cactgcgctg agcatcccac gcgcgaattc ttcgtcggtg gaatggctaa gctccactcg
     2101 tcaatggcgc tgaatacgcc gggtctttac gagaagatga acgagtcgat gatcgacagg
     2161 ctgcaaaact ccggcgagcc ggctttcccg aatcgtggtg atggtttgta cgacaccaac
     2221 tcgcgtctgt cggaacgcgg cgcgcaggat cgatttgtgc tcgaacacag tctctatcag
     2281 cagacgagac ttcatcccgc gttgacggcg acgctcgcgg ttgctggtgg gtttgcactc
     2341 gcggcatggc tcggttcgag agtaagacca gcctgaactc agacgggttt taattgcgcc
     2401 gttgtctgga ccggtttcgc gcggtcgggt ttgctgttgg ctctggtcgc acgggtggag
     2461 cgactacgtt aacaaccatc gtcgtctcgt tggcttcatt gctatcgtcg acgagccgga
     2521 gtttgaccgc gtaggttcct tccttttcgt aaacatgcct gtgcgtgagt ttcggcttgt
     2581 tgccgggttt ctgatgatcg aactcccatt cataagtgtt gctgttgtca ccgaaatcca
     2641 actcgtactc gtgaatcttg ccgtcaagat caaaaacctc ggtcacgaaa tttactgctg
     2701 agtctttcgt aatgttcttc gtgttgcgtt tgcctgcaat cgcgatcttc gcttgcggca
     2761 agtcgttgac atgccacgcc tctatttcag taatccggct ctcgccgccg agtgcgttta
     2821 agacaacaac gcggatcttg tttgtctcaa tggcgggaaa actgatcttt cgcacaacgt
     2881 ttcgattgcc tctgatcgcg ccgtttggca cagtgcgcca ggcgcgtccg gt
//
LOCUS       DASWTX010000016         1700 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_21818, whole genome shotgun sequence.
ACCESSION   DASWTX010000016 DASWTX010000000
VERSION     DASWTX010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21818"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..367
                     /locus_tag="VGD38_00225"
     CDS             <1..367
                     /locus_tag="VGD38_00225"
                     /inference="COORDINATES: protein motif:HMM:NF024579.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726461.1"
                     /translation="NFEHAVADDREAYNRQMNNRIEIFEQMLAADPGNTSVLFGLAKE
                     YEKAGRDNDLVEMLNRYLEKVDDEGNAFGMLAGAYERLGKRDQAREAYERGIETAHRH
                     GHPGMAEEYRMTLEDNYEY"
     gene            357..>1700
                     /locus_tag="VGD38_00230"
     CDS             357..>1700
                     /locus_tag="VGD38_00230"
                     /inference="COORDINATES: protein motif:HMM:NF012880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEY0726462.1"
                     /translation="MNTDTKVLKLVRKTDSSVESVEDVVTEVTPRPVPASVSKEEDLP
                     DHKLLLEMYRTMYTSRRLDDKEIQLKGQNRIFFQISGAGHEAVLAAAGVVLKPSYDWF
                     YPYYRDRALCLQLGMTPLEQLLSAVGAETDPNSHGRQMPSHWGHKALNIVSQSSPTGT
                     QLLQAVGCAEANYRFHLVPELQKRVKGFHKDEVTYVSVGEGTTSEGEFWEALNTACNL
                     KLPVVFLVEDNGYAISVPVEVQTAGGDVSRLVEGFPGLYIQRCDGTDAIESLETMRRA
                     VDYCRQRKGPSLVHAKVIRPYSHSLSDDEKLYRPDEERATDAERDPVKRFGALLIDSG
                     VIDQEGLQQIKDEADREVNEAADIALASAQPAQDTATKFVFSPDVDPTSSEFDTEDQV
                     QLSGNPGTMVDLINRTLHTEMARDPRIVVFGEDVADCSREQYLETVKGKGGVFKVT"
BASE COUNT          403 a          432 c          506 g          359 t
ORIGIN      
        1 gaacttcgaa catgcagttg cagacgatcg cgaagcttat aatcggcaaa tgaacaatcg
       61 catcgaaatc ttcgagcaga tgttggccgc agacccggga aacacgagtg tgcttttcgg
      121 tctggctaaa gagtacgaga aagccggccg cgataacgat ttggtcgaaa tgttgaaccg
      181 ttatcttgaa aaagttgacg acgaggggaa cgcgttcggt atgttggcgg gcgcgtatga
      241 acgtctcggc aaacgcgatc aggcgcgtga ggcgtacgag cgtggcatcg aaaccgcgca
      301 tcgccacgga catcccggca tggctgaaga ataccgcatg acgctggagg ataattatga
      361 atactgatac taaagttttg aagctggttc gaaaaacaga ttcatccgta gaatccgtgg
      421 aagatgtcgt tacggaagtg acgcccaggc cagttccggc ttcagtctcc aaagaagaag
      481 acttaccgga tcacaaactg ctgctcgaga tgtatcgcac gatgtacacg tcgcggcggc
      541 tcgacgacaa ggaaatccag ctcaagggtc aaaaccgaat tttctttcag atcagcggcg
      601 cgggacatga agcggtgctc gcggctgcgg gcgtggtgtt gaagccgagt tacgactggt
      661 tttatccgta ctatcgcgac cgcgcgctct gtttgcagct tggcatgacg ccgctcgaac
      721 agttgctctc ggctgtcggc gccgaaactg atccgaattc acacgggcgc cagatgccgt
      781 cgcactgggg ccacaaggca ctcaatatcg tttcgcagtc atcgccaacg ggcacgcaac
      841 tgctgcaagc agtcggttgt gctgaagcca attatcgttt ccaccttgtt cctgaactgc
      901 aaaagcgagt caagggtttt cataaggacg aagtgactta cgtctccgtc ggcgaaggca
      961 cgacgagtga aggtgaattc tgggaagcgc tgaacacggc gtgcaatctg aaactgccgg
     1021 tcgtgtttct ggttgaagat aacggttacg cgatcagtgt tccggttgaa gtgcagaccg
     1081 cgggcggcga tgtgtcgcgc ctcgtcgaag gatttcccgg gctttacatt cagcgttgcg
     1141 acggcactga tgcgatcgaa tcgctggaga cgatgcgccg cgcggttgat tattgccgcc
     1201 agcgtaaagg accgtcgctg gtccatgcga aagtcattcg tccttattca cactcgcttt
     1261 ccgatgacga aaagctttac cggccagatg aggaaagagc cacggatgcg gaacgcgatc
     1321 cggtgaaacg ttttggcgct ttgctgatcg actccggcgt gatcgatcag gaaggattgc
     1381 agcagatcaa ggacgaggcc gaccgtgaag tgaacgaagc ggccgacatc gcgctcgcga
     1441 gtgcgcagcc ggcgcaggac accgcgacaa agtttgtgtt ttcacctgac gtcgatccga
     1501 cctcttcaga gtttgatact gaagatcagg tgcagctctc cggcaatccc ggcacgatgg
     1561 tcgacctgat caatcgcacg ttgcacaccg agatggcgcg cgatccgcgg atcgtcgtgt
     1621 ttggcgaaga cgtcgctgat tgttcgcgcg agcagtatct cgaaaccgtg aaaggcaaag
     1681 gcggtgtttt caaagtcact
//
LOCUS       DASWTX010000017         1799 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_368633, whole genome shotgun sequence.
ACCESSION   DASWTX010000017 DASWTX010000000
VERSION     DASWTX010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1799
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368633"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..655
                     /locus_tag="VGD38_00235"
     CDS             <1..655
                     /locus_tag="VGD38_00235"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY0726463.1"
                     /translation="ENGRIQFEVVGVVKDATAYIFQKDSEPFFYRPLLQRPSPGMALH
                     VRTRGEPMALLPALRNEVGALGQNVVLRDAQPLSAFLNESLLTLRFVSTLTGIFGSLA
                     LALALVGVFSVVNYSTTRRTREIGIRMAIGAQRVDILKMILKEGLFIVVVGVVVGLII
                     AVASGRLLSSLMFADAGNDILVYVALALLQIIIALAACMLPAYKATRVDPTEALRQE"
     gene            1131..>1799
                     /locus_tag="VGD38_00240"
     CDS             1131..>1799
                     /locus_tag="VGD38_00240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726464.1"
                     /translation="MKESPVKIDALLEPLLRETSDDRAGEVLLQLINTHAEPVIKGVI
                     RFKLRLSSTQRAEADDIYQEVILQLLALLQKFRKLPDGHPIGDLRGMAAVIAHRTCAR
                     WLRRQFPERHALKNRLHYLVTRQRGFALWQDADGQLVTGFAAWQEQKLPTRRLPESDA
                     LATHIRPPKTGTPQDLAGTVAAIFNHVRGPIEFDDLLIAASSLLGVSDQPIESLAEDD
                     DAAAS"
BASE COUNT          372 a          558 c          524 g          345 t
ORIGIN      
        1 cgaaaacggc cgaatacagt tcgaagttgt gggagtggtt aaggacgcaa ctgcttatat
       61 ctttcagaaa gactcggagc ctttcttcta ccggccgttg ctgcaaaggc cgtcgccggg
      121 aatggccctg cacgtgcgga ccaggggaga gccgatggcg ctgctgcctg cgttgcgcaa
      181 cgaagtcggc gccctgggcc agaacgtcgt gctgcgcgat gcgcaaccgc tgtctgcctt
      241 cctgaacgaa tcgttactca cgctgcgttt cgtctcgacg ctcactggaa tctttggatc
      301 gttggcgtta gcactcgcgc tcgtcggcgt cttttcagtc gtgaactact ccacgacgcg
      361 tcgaacacgc gaaatcggaa tccggatggc catcggcgca caacgcgttg acatactcaa
      421 gatgatcttg aaagaaggat tgttcatcgt cgtcgttggc gtcgtcgtgg gattgataat
      481 agcggtcgct tccggacgcc tgctctcgtc gctcatgttc gcggacgccg gtaacgacat
      541 cctggtctac gtcgccctcg cgctgctgca aatcatcatc gcactcgcgg cctgcatgct
      601 cccggcgtac aaagcgacaa gagtcgatcc aactgaggcg ttgcgacagg agtaacacgc
      661 tgatcgacgt cgtatgggaa cggctcgcta ccggatggaa acggctcgct gccggatgga
      721 aacggctcgc tgccggatgg acggctctgc cgccggatgt gaggcgaggc tacgcctcgc
      781 cgtaggtggt tactaaaaag acggtgggct gtgcccctgg ttcgggctat gccccaaacc
      841 tttgggccag aggccatacc aggggcatag cccaacttct ttttctactt tagcggcggg
      901 gcgtagcccc gcctcacatc cggcggcaga gccgcactca tcggggagca cagccgcgtt
      961 atcaacggca gagcggcgtt catccggcgg cagagccgca ttcatcgggg agcacagccg
     1021 cgttatcaac ggcggagcgg cgttcatccg gcggagccgc attcatcggg agcacagccg
     1081 aaattctggc ggcagagccg gagagcatag aggacactga cacggaactg atgaaagagt
     1141 cgccggtaaa gatcgacgcc ttactcgaac ctctccttcg cgaaaccagc gacgatcgag
     1201 ccggcgaggt tttgctgcaa ctcatcaaca ctcacgccga acccgtaatc aagggcgtca
     1261 ttcgtttcaa actccgcctc agctccacac aacgcgccga agccgacgac atttatcagg
     1321 aagtcatcct gcaactcctc gcgctgttgc agaagtttcg caaactcccc gacggccatc
     1381 cgatcggaga tctgcgcggc atggcggccg tcattgcgca ccggacttgc gcgcgctggt
     1441 tgcgacgaca gtttcccgaa agacacgcac tcaaaaaccg gcttcattat ctcgtcacac
     1501 ggcagcgtgg tttcgcattg tggcaggacg ccgatggaca actcgtcacc ggcttcgcag
     1561 cgtggcaaga gcagaaactt ccaacgcgcc gtctgcccga gagcgacgcg ttagcaactc
     1621 acattcgtcc acccaaaacc ggcacaccac aggacctcgc cggcaccgtc gcggcgatct
     1681 tcaatcacgt tcgcggtccg atcgagttcg acgatctgct gatcgcggca tcgtcactgc
     1741 tcggcgtcag cgatcaacct atcgagtcgc tcgccgaaga tgacgacgcg gcggcgtca
//
LOCUS       DASWTX010000018         3931 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_260202, whole genome shotgun sequence.
ACCESSION   DASWTX010000018 DASWTX010000000
VERSION     DASWTX010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3931
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260202"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..844
                     /locus_tag="VGD38_00245"
     CDS             <1..844
                     /locus_tag="VGD38_00245"
                     /inference="COORDINATES: protein motif:HMM:NF014027.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008612 - peptidyl-lysine modification to
                     peptidyl-hypusine [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="deoxyhypusine synthase family protein"
                     /protein_id="HEY0726465.1"
                     /translation="AGMRRLLAYVIKNRFVDVLVVSGAMLFHDLHETLGRYHFQAHPT
                     MTDAELESAQISRMWDLLASDEEYREAKEWIGGFTNQLDQTRSYSPREFLHLLGRELA
                     EIASEDGLLTSAYKARVPIFCPAIADSGLAVGIAGARFEKKNYFMFDIIQDVLDMMNV
                     MAQARVSGIINLGGGTTKSFLQQAATSSFLQKEHHHGHKYAIQISTDAAHPGGRSNAV
                     SFDEGLIYGKLARGAHTAYVPCDATIALPILITSLSQTAAKYMKGRKRPNFQFGRELI
                     VEAP"
     gene            852..2705
                     /locus_tag="VGD38_00250"
     CDS             852..2705
                     /locus_tag="VGD38_00250"
                     /inference="COORDINATES: protein motif:HMM:TIGR00976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HEY0726466.1"
                     /translation="MRNPVFRISIILLPLAIATLTLQPTARTDQVDVKAFYTKTEQLI
                     PMRDGVKLFTAIYAPKDQSQKYPIMLNRTPYSVNPYGPNAYRDALGPSDHFQKEKFIF
                     VYQDVRGKFMSEGEWVEVRPYKPKKNGPKDIDESSDTYDTIEWLVKNVPNNNGRVGMW
                     GISYPGFYTSMGVIDAHPALKAASPQAPIADWFIGDDFHHNGALFLPHAFNFFATLGK
                     PRPAPTPNFPERFVHGTPDGYRFFLDMGPLANANTKYLKGEIAFWNDLMNHPNYDDYW
                     QARNIRPHLRNIKTPVMTVGGWFDAEDLFGALETYKTIEETNPGARNTLVMGPWFHGG
                     WARSEGDVLGSVSFGQKTSLTYRETVELPFFNCLLKEKCGEQLAEATVFETGSNQWRH
                     YDSWPPKNVESREIYLNANGALSFTAPSADAAFDEYVSDPARPVPFINNIAIGMTREY
                     MVDDQRFAATRPDVLVYQTDVLDRDVTLAGPIKATLFVSTSGTDSDFVVKLIDVFPNS
                     APETMGGYQMLVRGEPMRARFRNSFSKPEAMEPGKITKIEFTLPDVNHAFLRGHRIMV
                     QIQSSWFPLVDRNPQKFVDINRATEADFQKATQRVYHAGGNASRLTVSVLK"
     gene            complement(2707..>3931)
                     /locus_tag="VGD38_00255"
     CDS             complement(2707..>3931)
                     /locus_tag="VGD38_00255"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEY0726467.1"
                     /translation="SNVGLAIQCIGILLLTLLSLFIRSTIRGASLKYWTASWASLSVA
                     LLSLLIAFQLQPTQKLFYSVYFFGEYVFGLLFIAGCRTQVNSQVRGAQLQKRHAYALI
                     PAAAVAFALPYASRDFNDLFMIHAIIMAVLFMTSFFTLRKGFKSDEPSAGIRVMSTAL
                     LLLTIGFLHYVPVFGARKGLWGITVPAIYLQFTSVFDLLFEILLGFGTVMVLMESVRR
                     EVEHANRKLLEARDQLELLVQMDPLTEALNRHAFHSLLRRPEKGQESKTSGSVAVIDI
                     DNLKPINDTFGHTVGDKAIRAVARAMRSLVRADDMLFRWGGDEFLVLMFNLPQVEALR
                     RMEKLNQILEEHCGRWTSVPITVTVSYGVAGFNSLTDLGNAIEAADKAMYAQRNQTRG
                     RSIKSVEESLGEPVF"
BASE COUNT          890 a         1097 c         1131 g          813 t
ORIGIN      
        1 ggcaggcatg cgtcgactgc ttgcttacgt gatcaagaat cgcttcgttg acgtgctggt
       61 cgtttcaggc gcgatgctgt ttcacgatct ccacgaaaca ctcggccgtt atcacttcca
      121 ggcgcaccca acgatgaccg acgccgaact cgagtcggcc cagatcagcc gcatgtggga
      181 cttgctcgcg agtgacgaag agtatcgcga agcgaaagag tggatcggcg gcttcacgaa
      241 ccagctcgat caaacgcgtt cgtattcacc tcgtgaattt ctgcacctgc tcggccgcga
      301 actcgcggag atcgcttctg aagacggtct gctgacttcg gcttacaaag cacgtgtgcc
      361 gattttctgt ccggcgatag ccgacagcgg actggcagtc ggcattgccg gcgcgcgttt
      421 tgaaaagaag aactacttca tgttcgacat cattcaggac gtgctcgaca tgatgaatgt
      481 gatggcccag gcgcgcgtgt ccggaatcat caatctcggc ggcggcacga cgaagagttt
      541 ccttcaacaa gcggcgacct cttcgttctt gcagaaggaa catcatcacg ggcacaagta
      601 tgcgatccag atctcgacgg acgccgcgca tccgggcggc agatcgaacg cggtgtcgtt
      661 tgacgaggga ttgatctacg gcaagctggc tcgcggcgcg cacaccgcct acgttccctg
      721 tgacgccacc atcgcgctcc ccatactcat tacttcactt tcgcaaaccg cggcgaagta
      781 catgaaagga cgcaaacgtc cgaacttcca attcgggcgt gaactaatcg tcgaagcccc
      841 ttgatttatt tatgcgaaat ccggttttta gaatttcaat aattcttctc ccgctcgcta
      901 tcgcaactct aacccttcag cccacagcgc gaaccgatca ggtcgacgtc aaagccttct
      961 acaccaaaac cgaacagctg atcccgatgc gtgacggcgt gaagctgttc accgcgatct
     1021 acgcgccgaa ggaccagtcg caaaagtacc cgatcatgct gaaccggacg ccgtacagcg
     1081 ttaatccgta cggtcccaac gcctaccgcg acgcgcttgg tccatcggat catttccaga
     1141 aagagaagtt catcttcgtt taccaggacg tgcgcgggaa gttcatgtct gaaggcgagt
     1201 gggtcgaagt gcgcccgtac aagccgaaga agaatggacc aaaagacatc gacgaaagca
     1261 gcgacaccta cgacacgatc gagtggttag tgaagaacgt gccgaacaac aacgggcgcg
     1321 tcggcatgtg gggcatttcg tatcccgggt tctacacctc gatgggcgtg atcgatgcgc
     1381 atcccgcgtt gaaagccgct tcaccgcaag cgccgatcgc cgattggttc atcggcgacg
     1441 actttcatca caacggcgcg ttgtttctgc cgcacgcgtt caacttcttc gcgacgttgg
     1501 gcaaaccgcg tccggcgcca acgccgaatt ttccggaacg cttcgttcac ggcacgcctg
     1561 acggctatcg tttctttctc gatatgggac cgctcgcgaa tgccaacacg aagtatctca
     1621 aaggcgagat cgcgttctgg aacgatctga tgaaccatcc gaactacgac gactactggc
     1681 aagcgcgcaa cattcgtccg cacctgcgca acatcaagac gccggtgatg acagttggcg
     1741 gctggttcga cgcagaagat cttttcggcg cgctagagac ttacaagacg atcgaggaaa
     1801 cgaatcccgg tgcgcgcaat acgctcgtga tgggtccgtg gtttcacggt ggttgggcgc
     1861 gcagcgaagg cgacgtgctc ggcagtgttt cgttcgggca gaagacttcg ctgacttatc
     1921 gagaaacggt cgaactccca ttcttcaact gcctgttgaa agagaaatgt ggtgaacagc
     1981 tcgcggaagc gaccgtgttt gaaacgggat cgaatcagtg gcggcactac gatagctggc
     2041 cgccgaagaa cgtcgagtcg cgcgagatct acttgaatgc aaacggcgcg ttatcgttta
     2101 ccgcgccgtc cgctgacgcg gcgtttgacg agtacgtcag cgatccggcg cgtcccgttc
     2161 cgttcatcaa caacatcgcg attgggatga cgcgcgaata catggtcgac gaccagcgtt
     2221 tcgcggcgac gcgtccggac gtgctcgtct atcaaacaga cgtgctcgat cgcgacgtca
     2281 cgctcgctgg accaatcaaa gccacgttgt ttgtttcgac gtcaggaacc gattcggatt
     2341 tcgtagtgaa actgatcgac gtgtttccga atagcgcgcc ggaaacgatg ggcggttatc
     2401 aaatgctcgt gcgcggcgag ccgatgcggg cgcgttttcg aaacagtttt tcgaaaccgg
     2461 aagcgatgga gccggggaag atcacgaaga tcgagttcac gttgccggac gtgaatcacg
     2521 cgtttctgcg cgggcaccgg atcatggtgc agattcagag ttcgtggttt ccgctggtcg
     2581 atcgcaaccc gcagaagttt gtcgatatca accgcgcgac agaagccgac tttcagaaag
     2641 ccacgcaacg cgtttatcac gcgggcggca acgcatcgcg gctgacggtc agcgtgttaa
     2701 agtagtttag aacaccggtt cgccgaggct ttcttccacg gatttaatcg atcgtccgcg
     2761 tgtttgatta cgctgtgcgt acatcgcttt atctgcggct tcgatcgcgt ttccgagatc
     2821 tgtcagcgaa ttgaatcccg ccacgccgta cgaaacagtc accgtgatcg gcacgctggt
     2881 ccaacgcccg cagtgctctt cgagaatctg gttcagcttc tccatgcgcc gcaaggcctc
     2941 tacctgcggc agattgaaca tcaacacgag aaactcgtca ccgccccacc gaaacagcat
     3001 gtcgtcggcg cgcacgagcg aacgcatcgc gcgcgcgact gcgcgaatgg ctttgtcgcc
     3061 gaccgtgtga ccaaacgtgt cgttgatggg tttgaggttg tcgatgtcga tcacggcaac
     3121 gctgcctgac gtcttcgact cctggccttt ttccggccgc cgcagcaacg agtgaaacgc
     3181 gtggcggttc agggcttcag tcaacggatc catttggacc agcagctcga gttgatcgcg
     3241 cgcttcgagc agtttgcggt ttgcgtgttc gacttcgcgg cgcacgcttt ccatcaggac
     3301 catcaccgtg ccgaaaccga gcagtatctc gaacagcaga tcgaaaacgg acgtgaactg
     3361 caggtaaatt gccggcactg tgatgcccca caatcctttg cgcgcgccaa acacgggaac
     3421 gtagtgcagg aatccgatcg ttagcagcaa cagcgccgtg gacatcacgc gaatgccggc
     3481 gctgggttcg tctgacttga agcctttgcg aagtgtgaag aacgacgtca tgaacaacac
     3541 ggccatgatg atggcgtgaa tcatgaatag gtcgttgaag tcgcgcgacg cgtatggcag
     3601 ggcgaaggcg actgcggcag cggggatgag cgcgtaggca tgtcgcttct gtagttgcgc
     3661 gcctcttacc tgactattta cttgagtgcg gcaaccggcg ataaagagca ggccgaagac
     3721 gtattcaccg aagaagtaaa cggagtagaa aagtttctgt gtgggttgaa gttgaaaggc
     3781 gataaggaga ctgagcaggg ccacggacag gctggcccat gaagcggtcc agtatttcag
     3841 agacgcgcct ctgatcgtgg agcggatgaa aagggagagc agggtaagga ggaggatgcc
     3901 tatgcactga atagccaaac cgacattcga a
//
LOCUS       DASWTX010000019         2072 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_173524, whole genome shotgun sequence.
ACCESSION   DASWTX010000019 DASWTX010000000
VERSION     DASWTX010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2072
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173524"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..742)
                     /gene="pepT"
                     /locus_tag="VGD38_00260"
     CDS             complement(<1..742)
                     /gene="pepT"
                     /locus_tag="VGD38_00260"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: protein motif:HMM:NF003976.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripeptide aminopeptidase PepT"
                     /protein_id="HEY0726468.1"
                     /translation="MRSFLSFLFCLVFAVVAQAQTTLKPPTESAMDRFLRYVKIDTQS
                     AEDQTTTPSTRKQLNLANLLAKELTALGAENVRVSEFGIVYATVPGNLPDNSKVPVVG
                     FIAHMDTSPAVSGENVNAIIHKNYQGGDIVLPNDKTQVISVAKNPVLKTLIGDDIITA
                     DGTTLLGSDDKAGISEIMTMLDTFKQNPQIKRGTIAIAFTPDEEVGTGIEKFDVKGFG
                     AKFAYTVDGGELGEISDETWAARTATITF"
     gene            complement(774..1490)
                     /locus_tag="VGD38_00265"
     CDS             complement(774..1490)
                     /locus_tag="VGD38_00265"
                     /inference="COORDINATES: protein motif:HMM:NF015961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEY0726469.1"
                     /translation="MEQELKATVSIEKRVNRAYEFADLSDYSLKDRLLIRAADLAFYL
                     LINLIGLTARFEVIGWENHDKAEEDGGLPIYVFWHDRIFLTTYWWRKRRIVVMTSRSF
                     DGEYIARFIQRFGYGAVRGSSTRGGVGAVVEMARLMRAGCTTAFTIDGPKGPRYVAKM
                     GAVLLAKKTGHPIVPVTMALERYWTLPSWDLFQIPKPFTRARVYVAPPIYVPSDADEE
                     MLAAKRDELQRVLEDLNQKG"
     gene            complement(1497..>2072)
                     /locus_tag="VGD38_00270"
     CDS             complement(1497..>2072)
                     /locus_tag="VGD38_00270"
                     /inference="COORDINATES: protein motif:HMM:NF015251.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEY0726470.1"
                     /translation="HMNSGLILFTAHLGAWELTSFGPALFGHPFSFLVRRIDNPRIEE
                     FVDRVRMRFGNKTIDKLSAGRSMVKLLRSNGVLGLLPDLNTLDAEAIFVDFFGVPAAT
                     NFIMAKLALRTQSPIIPIFAPWSEEKQKYLLCIGPPVSIEPTGDEEEDVRRLTIQLSQ
                     IIENTIRRYPGQWLWIHKRWKTRPKGEPAIY"
BASE COUNT          431 a          609 c          575 g          457 t
ORIGIN      
        1 ggaacgtgat cgtcgcggtg cgggccgccc acgtctcgtc actgatctct ccgagttcac
       61 caccgtcaac cgtgtaagcg aactttgcgc caaaaccttt cacgtcaaac ttctcgatac
      121 ccgtgccgac ttcttcatcg ggcgtgaacg cgatcgcgat cgtgccgcgt ttgatctgcg
      181 ggttttgttt gaacgtgtcg agcatcgtca tgatttccga gataccggcc ttgtcgtcgg
      241 aaccgagcag cgtcgtgccg tccgcggtga tgatgtcgtc gccaatcaac gttttcagca
      301 ccggattttt ggcaacgctg atcacctggg tcttgtcgtt tggcaacacg atgtcgccgc
      361 cctggtagtt cttgtgaatg atcgcgttca cgttctcgcc ggagaccgcc ggcgacgtgt
      421 ccatgtgcgc gataaaaccg acgacgggca ccttcgaatt gtccggcagg ttgcccggca
      481 ccgtcgcgta gacgatgcca aactcgctga cacgcacatt ctccgcgccc aacgcagtca
      541 actctttcgc cagcagattg gcgaggttga gctgcttgcg cgtactcggc gtggtcgtct
      601 ggtcttccgc cgattgcgta tcgatcttca cgtagcgcag aaaacgatcc atcgcagatt
      661 cggtgggcgg ttttagcgtc gtctgcgcct gcgcgacgac ggcgaaaact aaacagaaca
      721 aaaaactgag gaacgatctc attgaaatct aagcaccttt cgttagctgg tcattaccct
      781 ttctgattca aatcctccag aacccgttgc aattcatcgc gttttgcggc cagcatttcc
      841 tcgtcggcgt ccgaggggac gtagattgga ggggcgacgt agacgcgtgc gcgggtgaat
      901 ggtttcggga tttggaagag gtcccaactc ggcaacgtcc agtagcgctc aagtgccatc
      961 gtcaccggca cgatcggatg gccggtcttt ttcgccagta acaccgctcc catcttcgct
     1021 acataacgcg gaccttttgg gccgtcgatt gtgaaagccg tcgtgcagcc cgcgcgcatc
     1081 agccgcgcca tctcgacaac cgcgccaaca ccgccgcgcg tgctcgaacc acgcaccgcg
     1141 ccgtaaccaa accgctgaat aaaccgcgcg atgtactcgc cgtcaaaact gcgcgacgtc
     1201 atcaccacga tacgccgttt gcgccaccag taagtcgtta aaaaaatgcg gtcgtgccag
     1261 aagacgtaga tcggcaaccc gccgtcttct tccgccttgt cgtgattctc ccaaccgatc
     1321 acttcgaacc gcgccgtgag gccaatgaga ttaatcaaca agtaaaaggc caggtccgcc
     1381 gcgcggatca acaaccggtc tttcaatgaa taatcagaca ggtcggcgaa ctcgtaagcg
     1441 cggttcacgc gcttttcgat cgacacggtc gccttgagtt cctgttccat cgtgaactaa
     1501 taaatcgcag gctcgccttt cggccgcgtc ttccaacgct tgtgaatcca gagccactgt
     1561 ccgggatacc gccggatcgt gttttcgatg atttgggaga gctgtatcgt taaccggcgc
     1621 acgtcttctt cttcgtcgcc ggtgggttcg atggaaaccg gtggtcctat gcacaacaga
     1681 tacttctgct tttcctcact ccagggggcg aatatcggaa tgataggcga ttgagtccgc
     1741 aacgcaagct tggccatgat gaaattcgtc gcggcgggaa cgccgaagaa gtcgacaaag
     1801 atcgcttccg cgtcgagcgt gttcaggtcg ggcagcaggc caaggacgcc attggagcgc
     1861 agcagcttga ccatcgagcg tccggcggag agcttgtcga tggttttgtt gccgaaacgc
     1921 atgcgcactc gatctacgaa ttcctcgatg cgcggattgt cgatgcggcg gacgagaaaa
     1981 ctgaacggat gtccaaacag tgcagggccg aagctggtca attcccacgc gccgagatgc
     2041 gcggtgaaga gaatcaggcc gctgttcatg tg
//
LOCUS       DASWTX010000020         4616 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_65367, whole genome shotgun sequence.
ACCESSION   DASWTX010000020 DASWTX010000000
VERSION     DASWTX010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4616
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65367"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1618
                     /gene="ppsA"
                     /locus_tag="VGD38_00275"
     CDS             <1..1618
                     /gene="ppsA"
                     /locus_tag="VGD38_00275"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: protein motif:HMM:NF005057.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008986 - pyruvate, water dikinase
                     activity [Evidence IEA];
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0006090 - pyruvate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HEY0726471.1"
                     /translation="GSRTTRNESTPLEDRQKFSLCDDQVLKLANWACLIEDHYSRIAG
                     KPQPMDIEWAKDGTTSELFIVQARPETVHSAKPQTAAAEVYRLKSSPPQLLATGQAIG
                     AKIGAGPVRVVHTVADLGKVQAGDVLVARITDPDWEPVMRRVAAIVTDQGGRTAHAAI
                     VSREFGIPCIVGCGNATELLHDGDEVTVCCAEGSEGHVYAGRAEFEIEKIDAAAVPPT
                     LTEVMLTIGDPAKAFQTSFIPNSGVGLARTEFIVTNHIGIHPMALARYPNLKDAGTVQ
                     QIAARIGSEEPREFFIRRFSEGVGRIAAAFYPKPVIVRTSDFKTNEYARLLGGAEFEP
                     VEENPMLGFRGASRYYDERYADGFALECAALWRVRKDMGLTNVKVMIPFCRTVEEAKK
                     VIDVMAQHGLKQGEHGLQIYGMCELPSNIVRAEEFLRVFDGYSIGSNDLTQLVLGIDR
                     DSGTVAHLFDERDRAVMGMIAEVIGEARRAHKPIGICGQAPSDFPDFARWLVEQGITS
                     ISLNPDSAIKTTLVIANEEAKRHRFATAKA"
     gene            1638..2651
                     /locus_tag="VGD38_00280"
     CDS             1638..2651
                     /locus_tag="VGD38_00280"
                     /inference="COORDINATES: protein motif:HMM:TIGR02822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HEY0726472.1"
                     /translation="MQAWILNKPAAVRDRPLSRADVPVPTPAGDELLLQVAACGICRT
                     DLHVVEGELPVGRSPLIPGHQVVGRVISTGSKVKDFMTGDRVGVAWLNRTCGVCEFCL
                     AGRENLCEQAMFTGWSVDGGYAEYMVAPAAFTYRLPDNFGDVQAAPLLCAGIIGYRCL
                     RLTGLNPSDWTGARLGLYGFGAAGHVCIQLARARGADVYVCTRDRERHQALARGLGAV
                     WVGDAFDEPPVKLDAAIIFAPAGELVPVALKAVRKGGTVVLGGIHMSPIPSFDYSLIY
                     GERVVRSVANNTREDGREFLAEAARIPVRTHIQTFSFDQANDALIALKNDSIRGAGVL
                     VLK"
     gene            complement(2694..3095)
                     /locus_tag="VGD38_00285"
     CDS             complement(2694..3095)
                     /locus_tag="VGD38_00285"
                     /inference="COORDINATES: protein motif:HMM:NF036463.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5335 family protein"
                     /protein_id="HEY0726473.1"
                     /translation="MKTKEIPRQEWGTFFDNFSRQHEGWLATLEILGTEIGAQVEERE
                     LPLKGIVDEGNEIMIMVGMRPDDHVTHAIGNATQVSLEQTDDGADAVLAIKSADGTTA
                     LLRFRKPMLPELVEGMVPQLATRPVAEKQTQ"
     gene            complement(3178..3738)
                     /locus_tag="VGD38_00290"
     CDS             complement(3178..3738)
                     /locus_tag="VGD38_00290"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEY0726474.1"
                     /translation="MKDKKEKELTKTEEMPVTATTPFSFMRRFATDMERLFEEFEGFR
                     FPSVFGREFFPFTREFEHVGWVPEIEVLRKNGDFIVRADLPGMNKENVKVEINHNVLT
                     LSGERKDEKEEKHEGYYRTERSYGTFYRQIPLPEGTKTETATAEFKNGVLEITMQAPK
                     KEPQVRRLEIKQPEETAKAKAAAGAR"
     gene            3968..4453
                     /locus_tag="VGD38_00295"
     CDS             3968..4453
                     /locus_tag="VGD38_00295"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEY0726475.1"
                     /translation="MKVKDIMTRDPSVCDLNESLAEAARMMWEADCGVLPVLKDGREV
                     VGLITDRDICMAMAMRDNNPAAVSAEAVITGEVYSVEPEDEIEKALELMQQHRVRRLP
                     VVNSEGELKGMLSMNDIVLKAQRKSNGKTPEIRYADVVDTYKAICAHQAPRQAQAAAG
                     A"
BASE COUNT          992 a         1286 c         1304 g         1034 t
ORIGIN      
        1 cggcagccgc accacgcgaa acgagtccac gccgcttgaa gatcgtcaga agttttcact
       61 gtgcgacgat caggttctca agctcgcaaa ctgggcctgc ttgatcgaag accattattc
      121 gcgaatcgca ggcaagcccc aaccgatgga tatcgagtgg gccaaggatg ggaccacgag
      181 cgaactgttt atcgtccagg cccggcccga aactgttcat tccgccaaac cgcaaacagc
      241 agcagcggag gtctatcgcc tgaagagttc gcctccgcaa ctgctcgcaa ccgggcaagc
      301 aatcggagca aagattggcg ccggacctgt gcgcgtcgtg cacactgttg cggatttggg
      361 aaaggtgcag gctggagatg tgctggtcgc gcgaattacc gatcctgatt gggaaccggt
      421 catgcgtcga gttgcagcga tcgtaaccga tcaaggcgga cgcactgcgc acgcggcgat
      481 cgtgtcgcgc gaattcggca ttccgtgcat cgtcggatgt ggtaacgcaa ctgaattgct
      541 tcacgacggc gacgaagtca ctgtttgctg tgccgaaggc tccgaaggac acgtttatgc
      601 cgggcgcgca gaatttgaga tcgaaaagat cgacgccgca gcagtgccgc caacgctcac
      661 cgaggtcatg ctcacgatcg gcgatcctgc caaagcattt cagacgtcat tcattccaaa
      721 ctccggcgtt ggactcgcac gcaccgagtt catagtcaca aaccacatcg gcattcatcc
      781 gatggccctc gctcgctatc caaacctgaa ggatgccggc accgtacaac aaatcgctgc
      841 acgaattgga tcggaagagc cgcgagagtt cttcatccgc cgcttcagtg aaggcgtcgg
      901 acggattgcg gcggcgttct atccgaaacc agtgatcgtt cgcaccagcg atttcaaaac
      961 gaatgaatat gcgcgattgc tcggcggcgc agagtttgag ccggtcgaag agaatccgat
     1021 gctcggtttc cgcggagctt cgcgttacta cgacgagcgt tacgccgacg ggtttgcgct
     1081 tgaatgtgcc gcgctgtggc gggtacgcaa agacatgggc ctgacgaacg tcaaggtcat
     1141 gattccgttc tgccgtactg tcgaagaggc gaaaaaagtg atcgacgtga tggcccaaca
     1201 cggtctcaag cagggtgagc acggattaca gatctacggg atgtgcgagc ttccgtcgaa
     1261 catcgttaga gcagaggagt ttctccgcgt gtttgacggt tattcgatcg gttccaacga
     1321 tctgacgcag cttgtcctcg gaatcgaccg cgattcgggc accgttgcgc atctcttcga
     1381 cgaacgcgat cgcgccgtga tgggcatgat cgcagaagta atcggcgaag cccgtcgtgc
     1441 gcataagcca atcggcattt gcggccaggc gccgtcagat tttccggact tcgcgcgctg
     1501 gctcgtcgaa caaggcatta cttccatctc cttaaatccg gactcagcga tcaagacaac
     1561 gcttgttatt gcaaacgaag aagctaaacg tcatcgattc gcaacggcga aagcgtaata
     1621 agcgtcagat gaatcaaatg caggcctgga ttctaaataa gccggcggcg gttcgtgacc
     1681 ggccactcag ccgcgctgac gtgccggttc cgaccccggc cggcgatgaa ctgcttctgc
     1741 aagtggccgc gtgcggcatt tgccgaacag acttacacgt cgtcgaaggc gagttgccgg
     1801 ttggtcgttc gcctttaatt cccgggcacc aggtcgtcgg ccgcgtgatc tcaacgggtt
     1861 cgaaagtcaa agacttcatg accggcgatc gcgtcggcgt tgcatggctc aaccggactt
     1921 gtggcgtgtg tgagttctgt cttgccggcc gggaaaactt atgcgagcag gcgatgttca
     1981 caggctggag cgttgatgga ggctatgcgg aatacatggt cgcgcccgcc gcgttcacct
     2041 atcgcttgcc cgacaacttc ggcgacgtac aggccgcgcc actgctctgc gctggaatta
     2101 ttggttatcg ctgtttgcgt ttgaccggtc taaatccgag tgattggaca ggcgcgcggc
     2161 tgggtctgta tggcttcggc gccgcgggcc atgtctgcat tcaactcgca cgcgcgcgtg
     2221 gagctgacgt ctacgtctgc acgcgagatc gagagcgcca ccaggcgctg gcgcgcggac
     2281 tcggcgcggt ttgggttggt gatgcgtttg acgaaccgcc cgtcaaactt gacgcggcga
     2341 tcatctttgc accggccgga gaactggttc cggtcgcact caaagctgta cgcaaaggcg
     2401 gcacggttgt tttaggcggc attcacatga gccccatacc ttcgttcgac tattcactta
     2461 tctatggcga gcgagtggtg cgaagtgtcg ccaacaacac acgcgaagat ggccgcgagt
     2521 ttctcgcaga ggccgcgcgg attcctgtcc gcacgcacat acaaaccttt tcattcgatc
     2581 aggctaacga tgcactgatc gcactgaaga atgattccat tcgcggcgcc ggcgtgctgg
     2641 tgttgaagta aatgtttgcg gcaacgccgg cgtccgattc tctacacaac gactcactgc
     2701 gtttgcttct ctgcaaccgg ccgtgttgca agttgcggaa ccattccttc caccaactcc
     2761 ggcaacatcg gcttgcgaaa acgcaggagc gcggtggttc catccgctga cttaattgcg
     2821 agcaccgcat cagcgccatc gtccgtttgt tccagactca cctgcgtggc attgccgatc
     2881 gcatgcgtga cgtgatcgtc cggcctcatc ccgaccatga tcatgatctc gttgccttcg
     2941 tccacaatgc ccttgagagg cagctctcgc tcttcgactt gcgctccgat ctccgtgccg
     3001 agaatctcca atgtcgccag ccatccctca tgttggcggc tgaagttatc gaagaatgtt
     3061 ccccactctt gtcttgggat ctctttggtt ttcatttcaa ctctccttta caacaagagc
     3121 cgagagcgtt aactctcggc tcccgttcac gctataacta cccctgtcgt cgcagagtta
     3181 tctggcgccg gcggccgcct ttgctttggc cgtctcttcg ggttgcttga tttcgaggcg
     3241 gcgaacctgc ggttcctttt tcggcgcctg catcgttatt tcaagcacgc catttttgaa
     3301 ttctgccgtg gcagtttctg tcttggtccc ctcgggcaac ggtatctggc gatagaacgt
     3361 gccgtagcta cgctcggtgc gatagtagcc ttcgtgtttc tcttccttct cgtcttttcg
     3421 ttcccccgaa agggtaagca cgttgtgatt gatttcgact ttgacgttct ccttgttcat
     3481 gccggggaga tcggcgcgca cgataaagtc accgttcttt cgtagcactt cgatctcggg
     3541 aacccagcct acatgttcaa actctctcgt aaacggaaag aactcccttc caaagacgct
     3601 cgggaatctg aatccctcaa actcttcgaa aagccgctcc atgtcggtag caaaccggcg
     3661 catgaagcta aacggagtcg tagccgtaac cggcatctct tccgtctttg tgagctcctt
     3721 ctctttcttg tctttcataa tttcctcctt ccgatcaacg atcgccagca acgaacgtac
     3781 cgggcaaagt gatgcgaaag ccttaatgct tttgtgatcg cgttacgaat aactgtggaa
     3841 agttgcggat gagtgggtga aaattcgctg caaagatcga tcgcagtagt gctcttgttc
     3901 ttcaggacgg cgggctccag acggcatatt cgttgcctac gcaagatctg gaaagtgagg
     3961 tgaaattatg aaggtcaaag acattatgac tcgtgacccg agtgtctgtg acttgaatga
     4021 gagtctggct gaagcagcga ggatgatgtg ggaagccgac tgtggtgtgc tgccggtgct
     4081 caaagacggc agagaggtcg tcggtttgat cacggatcga gacatctgca tggccatggc
     4141 catgcgcgat aacaatccgg ccgcggtctc ggctgaagca gtgatcacgg gcgaagtcta
     4201 ctctgttgaa cccgaggacg agattgaaaa agcgcttgaa ctcatgcagc aacatcgagt
     4261 gcgccggcta ccggtcgtca attcggaagg cgagctgaaa ggaatgttgt cgatgaacga
     4321 catcgtcctg aaggctcaac gaaagagcaa tggtaagacg cccgaaatca gatatgcgga
     4381 cgtcgtcgac acctataaag cgatctgcgc acaccaggct ccccggcaag cgcaagcggc
     4441 tgccggtgcg tgaactcaat ccgcaaacga ttaaccgcta agagtatgat caactggcgc
     4501 aaggacctgc atttgacacg ctcgcgagag atcgggagcg tgttgattgg gcatggatgg
     4561 gattacctgc tgaacaagcg ggagagcggc aagttcaaac ctaaacaacg cctcca
//
LOCUS       DASWTX010000021         2707 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_325324, whole genome shotgun sequence.
ACCESSION   DASWTX010000021 DASWTX010000000
VERSION     DASWTX010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2707
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325324"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1116)
                     /locus_tag="VGD38_00300"
     CDS             complement(<1..1116)
                     /locus_tag="VGD38_00300"
                     /inference="COORDINATES: protein motif:HMM:TIGR04519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAT-variant-translocated molybdopterin
                     oxidoreductase"
                     /protein_id="HEY0726476.1"
                     /translation="MSESDRHINFKLMRDHILALQDADGPRGSKKYWRSLDELADTPV
                     FREFVAREFPQQAEGWNDPVERRTFLKLMGASLALAGLSGCVFQPPEKIVPYVKQPEE
                     HVPGKALFFATAAPLFGGAATPVLVRSNEGRPTKIEGNPDHPNNQPVNVTGADPYRDP
                     RGSSATDIFSQASILSLYDPDRSPTLTFREDIRTWTAFVGAMRSVLNEQRPKQGAGIR
                     FLTETITSPSLGAQIQELRTALPQAKWHQYEPANHDNSRAGAVMAFGQPVNTIYKFDV
                     AQRILSLDADFLSPVTPGYLRYAREFIAHRRVTEQTREMNRLYVIETTPSNTGAMADH
                     TWTVKPSQMEGLVRTLASGGISSDFPWIAPLLRDLQQH"
     gene            complement(1137..1805)
                     /locus_tag="VGD38_00305"
     CDS             complement(1137..1805)
                     /locus_tag="VGD38_00305"
                     /inference="COORDINATES: protein motif:HMM:NF025875.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HEY0726477.1"
                     /translation="MPQIFHHSTNALAKITIYGAVFIIVALLWVAVELNRSSWNTGQW
                     VERQQPVQFSHKHHVGDDGIDCRYCHTSVEVSASAGMPSTNVCMSCHKQIWAESPYLE
                     PVRASFRTNKPLEWIRVHDLPDYAYFNHSIHVKKGVGCSTCPGRVDDQPIMYQAATLQ
                     MEWCLECHRAPERFVRPKDKIFDMTWRPENKGQEQLAEGFRLKAEYKIQGRKILESCS
                     TCHR"
     gene            complement(1869..>2707)
                     /locus_tag="VGD38_00310"
     CDS             complement(1869..>2707)
                     /locus_tag="VGD38_00310"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEY0726478.1"
                     /translation="SPETIVTQLAEVAAQLRSAGDPVAALGVAIPGLVNRQTDRVVSA
                     RDLPPPLFEDLHAELTRATGLRVEIENDANAAAYGEFKVGAGRGSRNLFYMMIGDGIG
                     GAIILDGKLWTGASGFAGEVGHITIDTEGLECICGNTGCLETVASGPNIVRRARERLN
                     RDNTSSLSRLALNKNFTADDLAHEAREGDDFAAMMIERTGKFIGTGVASVINLLNIDC
                     IVLGGGVMEAGPLILNPIIQEAKRRAFQPCFDATHIVAATLGKDAAVIGAALLSRDAE
                     EN"
BASE COUNT          575 a          773 c          780 g          579 t
ORIGIN      
        1 gtgttgttga aggtcgcgga gcagcggcgc aatccacgga aaatcagagg agattccgcc
       61 gctcgcgagt gtgcgaacca aaccttccat ctgactcggt ttcaccgtcc acgtgtgatc
      121 cgccatcgcg cctgtgtttg aaggcgtcgt ctcgatcacg tagagacggt tcatctcgcg
      181 agtctgttcg gtcacgcgcc ggtgggcgat gaattcgcgt gcgtaacgca agtaacccgg
      241 cgtcacgggc gacagaaaat cagcatccag cgagagaatt cgctgcgcga cgtcaaactt
      301 gtagatcgtg ttgaccggct gtccaaacgc catcaccgcg cctgcccgcg agttatcgtg
      361 attggccggc tcgtactggt gccacttcgc ctgcggcaac gcagttcgca actcctgtat
      421 ttgcgcgccg agcgacggcg acgtgatcgt ttccgtcaga aaacgaatgc ccgcgccctg
      481 tttcgggcgt tgctcattca gcaccgagcg catcgcgccg acgaacgcgg tccacgtgcg
      541 aatgtcttca cgaaaagtca gcgttggcga acggtcggga tcgtaaagac tcagaatcga
      601 cgcttgcgag aagatgtctg tggcgctcga accgcgcgga tcgcggtacg gatctgcgcc
      661 ggtaacgtta acgggctggt tgttcggatg gtccggattg ccctcgatct tcgtcggccg
      721 tccttcgtta ctgcggacga gaaccggcgt cgcggcgccg ccgaacagcg gcgcggcagt
      781 cgcgaagaac agtgcttttc cgggaacgtg ctcttccggc tgtttgacgt aaggaacaat
      841 cttttcgggc ggttggaaaa cgcagccact caaaccggcg agtgcgagcg acgcgcccat
      901 caatttcaaa aacgtgcggc gttcgaccgg atcgttccaa ccctcggcct gctgcggaaa
      961 ctcgcgcgca acaaactcac gaaacaccgg cgtgtccgcc agttcatcca gacttcgcca
     1021 atacttctta ctaccgcgcg gcccatcagc atcctgtaaa gcaagaatgt gatcgcgcat
     1081 tagcttgaag tttatgtgac gatcgctttc gctcatttca atatcaaaag ttcaatctag
     1141 cggtggcaag tggaacagct ttcaaggatc tttctgccct gaatcttgta ttcagccttt
     1201 aaccgaaaac cttcggccag ttgctcctgg cccttgtttt ccggccgcca ggtcatgtca
     1261 aaaatcttgt ctttcggccg cacgaaccgc tccggcgcgc ggtgacattc caaacaccac
     1321 tccatctgca acgtcgctgc ctggtacatg atcggttgat cgtcgacacg tccaggacac
     1381 gtcgaacacc cgacgccctt cttaacgtga atgctgtgat tgaagtaggc gtaatcaggc
     1441 aggtcgtgaa cgcgaatcca ttcgagcggc ttgttggtgc ggaagctagc gcgtacgggt
     1501 tccaggtagg gactctcggc ccagatctgc ttgtgacagc tcatgcagac attggtcgaa
     1561 ggcataccgg cactcgccga aacttcaact gaagtgtggc agtaacggca atcgataccg
     1621 tcgtcgccga cgtgatgctt gtgactgaac tggaccggct gctgccgttc gacccattgg
     1681 cccgtattcc acgacgaacg attaagttca acggcaaccc ataacagggc gacgataata
     1741 aaaacagcgc cgtagatagt aatcttcgct aaagcattag tgctgtggtg gaagatctgt
     1801 ggcattggaa agcacgcact ttaccaaata gatcgagaaa ttcaaattgg gccacagaac
     1861 tgtgagagtt agttttcttc cgcgtcacga gagaggaggg ccgctccgat aacggcagcg
     1921 tcttttccga gcgtcgcagc gacgatgtgc gtggcgtcaa aacaaggttg aaaggcgcgc
     1981 cgcttcgctt cctggatgat gggattgagg atcagtggac cggcttccat aacgccgccg
     2041 ccgagcacga tgcagtcgat gttcagcaga tttatgacgc tggcgacgcc cgttccgatg
     2101 aattttccgg tgcgctcgat catcatggcc gcgaaatcgt cgccttcgcg ggcttcgtgg
     2161 gctagatcgt cggcagtgaa gtttttattg agcgccagac gcgataacga cgacgtgttg
     2221 tcgcgattca ggcgttcgcg ggctcgtctg acgatattcg gtccggaagc gacggtttcg
     2281 agacaaccag tgttgccgca aatacattcg aggccttcgg tatcgatcgt gatgtgtccc
     2341 acttcgcccg caaacccgga agcgccggtc cagagttttc catcgagaat gatcgcgccg
     2401 ccgatgccgt cgccaatcat catgtaaaaa agattacgac ttccgcggcc ggcgccgact
     2461 ttgaactcgc cgtaggcggc ggcgttcgcg tcgttttcga tctcgactcg caaaccagtc
     2521 gcgcgcgtca gttcggcgtg aagatcttcg aacagcggcg gcggaagatc gcgcgctgaa
     2581 acaacgcgat cggtctgacg atttaccagg ccggggatcg cgacgcccag tgccgcgaca
     2641 ggatcgcctg ccgaacggag ttgggccgca acctcggcaa gctgcgtgac tatcgtctcg
     2701 ggcgaga
//
LOCUS       DASWTX010000022         1919 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_281950, whole genome shotgun sequence.
ACCESSION   DASWTX010000022 DASWTX010000000
VERSION     DASWTX010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1919
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281950"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..241)
                     /locus_tag="VGD38_00315"
     CDS             complement(<1..241)
                     /locus_tag="VGD38_00315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726479.1"
                     /translation="MSAAAHPPMGAVADFSFYDKLNSVWHRRALYAFTFIVLAHWAEH
                     LTQAYQIYVMGWPRPEAGGFLGLFFPWLVSSEIMHY"
     gene            complement(338..1780)
                     /locus_tag="VGD38_00320"
     CDS             complement(338..1780)
                     /locus_tag="VGD38_00320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726480.1"
                     /translation="MDRIKQLLKYQWRAYWRRFRGSANLRASNVGVLVLFGGLAALRF
                     LQQLPLAASQLERGESGRYETLALVVFFVWMVPVMGESRRSIASRSLLHFPLTPRELF
                     VIRVGSVFCSPLSWIVVALSLALGYPVAATEHPVTGFVGLVALLLLGLFASLTIAHLL
                     QGAFVRCLSFVALLVVSAVGGLLWLEKQTQFATTLKSLLPHRLAVAAATSSTPLRSLA
                     VLLGLTGLFAILSLWTFTLTLHSQQTRRSQRVFGMSQLPGKFGGLLKKDLRYSSRLLD
                     LYLVLPIVVLFDLYLVSDAAPSAIAFSIIIAVLFFPCLGIAFNLFGLDSALALDRYTL
                     LPLSGKEKLFSKNLAFAVLMFGLFATILPFVFWRLGWRVSVLGLMEFAAVILAYLFCG
                     NWLSVKQPFRMQFYRFASGGSLVDMVIGIMIASAPAAFTVYLFATDDGAMGWNLTAVT
                     LTCLGLYLLSLSRSARVLDRDHEQIRRALS"
BASE COUNT          536 a          549 c          521 g          313 t
ORIGIN      
        1 cgtaatgcat gatctcggag ctcacgagcc aggggaaaaa caggccgaga aagcctccgg
       61 cctcgggccg cggccagccc atgacgtaaa tctggtaagc ctgcgtgagg tgttcggccc
      121 agtgggccaa cacgatgaat gtaaaggcgt aaagtgcgcg tcgatgccaa acgctgttca
      181 gcttgtcgta aaagctgaag tcggctacgg cacccatcgg cgggtgtgcg gctgctgaca
      241 ttgcgaccct tcctttgcga tgtttctaac gagacggtta aacggctgtc agtctagcgc
      301 aaacttagtt tactgaccac cattttagag tgtcatttta agacaaggcg cggcgaattt
      361 gctcgtgatc gcggtccaaa acccgggcgg aacgcgaaag agaaagaaga tagagcccga
      421 gacatgtcag cgtgacagcg gtgaggttcc aacccattgc accgtcgtcg gtggcgaaga
      481 gatagaccgt gaaagcggcg ggagcactgg cgatcattat tccgatgacc atatccacga
      541 gcgagccgcc cgatgcgaag cgatagaact gcattcgaaa cggttgtttg accgagagcc
      601 agttgccgca aaacaggtag gcaaggatca ccgcggcaaa ctccatcagc cccaaaacac
      661 tcacgcgcca tcccaatctc caaaacacga acggcaggat cgtggcgaac aggccaaaca
      721 tcagcacggc aaacgcgagg ttcttgctga agagtttttc tttgccgctg agcgggagca
      781 gcgtgtaacg gtcgagggcg agcgcgctgt cgagaccgaa gagattgaac gcgatgccga
      841 gacacgggaa gaaaagaacg gcgatgatga tcgagaaggc tatggcggac ggagccgcgt
      901 ctgaaacgag gtacaaatcg aacaagacga cgatcggcag gacgagataa agatcgagca
      961 agcggctcga gtagcgaaga tccttcttga gtagcccacc gaatttgccc ggaagttgac
     1021 tcataccaaa gacgcgttgc gaacgccgcg tctgttgcga atgaagcgtg agcgtgaatg
     1081 tccacagcga aaggattgcg aagagaccag taagcccgag gagaacagct aatgaccgaa
     1141 gcggcgtaga cgaagtcgcg gcagcaaccg cgagacgatg cggcagcagc gatttcaatg
     1201 tcgttgcgaa ttgcgtctgc ttttccaacc aaagcaggcc gccaaccgca ctcacaacca
     1261 acagcgcaac gaacgacaaa catctaacga acgcgccctg caacagatgc gcgatcgtta
     1321 gactcgcaaa gagtcccaac agcagcaacg ctaccaaccc aacgaaaccc gttaccgggt
     1381 gttcagtcgc ggcgactgga taaccaagcg ccaacgaaag cgcgacgacg atccaactca
     1441 acggcgaaca aaacaccgat ccgactctga tcacaaaaag ctcacgcggc gtgagcggaa
     1501 aatgaagcaa cgatcgactc gcaatcgacc ggcgcgactc gcccatcacc ggcaccatcc
     1561 acacgaaaaa tacaactaac gccagcgtct catatctccc tgactcgcct cgttcgagct
     1621 gtgacgccgc gagcggaagc tgttgcaaaa accgaagcgc agcgagtcca ccgaaaagca
     1681 ccagcacacc gacattactc gcacgcagat tcgccgagcc gcgaaaacgc cgccagtatg
     1741 cacgccactg atactttaat agctgcttta tccgatccac tcaaactcct cgaccgttcg
     1801 tctctgcaca tactgaaaat aaacatcttc aagtgtgcgg cccgatcgca gcgtctcttc
     1861 catcgtgtga ctacacacga gctcgccatg cacgatcacg gcgtagctat gaaccagac
//
LOCUS       DASWTX010000023         1663 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_368687, whole genome shotgun sequence.
ACCESSION   DASWTX010000023 DASWTX010000000
VERSION     DASWTX010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1663
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368687"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(303..1157)
                     /locus_tag="VGD38_00325"
     CDS             complement(303..1157)
                     /locus_tag="VGD38_00325"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HEY0726481.1"
                     /translation="MTNCENIRERLTLYLDNELQGDERALVEAHVESCDSCASFVEKE
                     LTFLNTIRKSGPLHVASPELKAKVSELVSGFDGPVVSERSRRLKWMLPVAAGLLVLLL
                     PVVIWRIVRDGEHPENVAPSAFALKAAESHLKHTRGQLPLEINSSDPQEISEWFENKV
                     NFHVKLPSYQESSGQEILYKLEGGRLVNFQNDYAAYVSYHMKDRPISLVITSELLAQP
                     SGGEEIASKGLMFHYNAIDGLKVITWSDRGLTYALVSDLEERGHQSCIVCHQGTKDQD
                     FIEPLKRH"
     gene            complement(1154..>1663)
                     /locus_tag="VGD38_00330"
     CDS             complement(1154..>1663)
                     /locus_tag="VGD38_00330"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0726482.1"
                     /translation="AATMLEHLDALYGYAMTLTRDRTEAEDLVQETYLRAVRAANQPA
                     PQENPKAWLFVIMRNTWLNVMRHKQHGVQIFDDGTAAATASDVTSNPHVVYLRKLEQE
                     LVREAIASLPVRHREIIVLRDIEGFSYHEIATVLNCPAGTVMSRLGRARGKLRDALSA
                     RQKVHRRIG"
BASE COUNT          342 a          535 c          445 g          341 t
ORIGIN      
        1 ctggttcggc ctttggccca aacgcggagg gcagagcccg aaccagaggc gtagcccaat
       61 ttattgttat caaacgcgac cggcggggcg gagccccgcc tcacatccgg cggcggagcc
      121 gctacgatgc cggtaccgaa gtcagcctct actaagcgac agtgtcttaa ttttcggagc
      181 gcgggcggct cgcccgccgg tggagccacg taaaacgcag ggatctactg cgggcgagcc
      241 gcccgcgctc cgaaattagg ccactacttt agcgacggcg agcgcgaccg gcggagccgc
      301 aattagtgcc gcttcagcgg ctcgatgaag tcctggtctt tggtgccctg gtggcagacg
      361 atgcaggatt gatggccgcg ctcttcgagg tctgagacga gcgcgtaggt caggccgcgg
      421 tctgaccagg tgatcacttt caatccgtcg atcgcgttgt agtgaaacat cagccctttc
      481 gacgcaatct cttcaccacc cgacggttgc gccaatagct cggaagtgat cacgagactg
      541 attgggcggt ccttcatgtg atacgacacg tacgcggcgt aatcattctg aaaattcacg
      601 agccgcccgc cttcgagttt gtaaagaatc tcctgccccg acgactcctg ataactcggc
      661 agcttcacgt gaaagttgac cttgttctca aaccactccg agatctcttg cgggtcggac
      721 gaatttatct ccagcggcaa ctgcccacga gtgtgcttca gatgactctc agccgccttc
      781 aacgcaaacg ccgaaggcgc cacgttctcg ggatgctcgc cgtcacgaac gatacgccag
      841 atcacaaccg gcaacagcaa caccagcaaa cccgccgcaa ccggcaacat ccacttcaac
      901 cgccgcgagc gctcgctaac caccggccca tcaaaaccac taacgagctc cgaaaccttc
      961 gccttcaact ccggcgacgc aacatgcaac ggcccgctct tgcgaatcgt gttcagaaac
     1021 gtgagttcct tttccacaaa cgacgcgcac gaatcgcaac tctcaacgtg cgcttcaacc
     1081 agcgcgcgct cgtcgccctg taactcgtta tcgagataca aggtcagtct ctcacgtatg
     1141 ttctcgcagt ttgtcatccg attcttctgt gaactttctg tcgggcggaa agcgcgtcgc
     1201 gcaattttcc gcgtgcccgt ccgagccgcg acatcaccgt gcccgccgga caattcaaca
     1261 ccgtcgcgat ctcgtggtaa ctaaaacctt cgatgtcgcg cagcacgatg atctctcgat
     1321 gacgtaccgg caaactcgca atcgcctcgc gcaccagctc ctgttccaac ttccgcaggt
     1381 aaaccacgtg cgggttgctg gtgacgtcgc ttgccgtagc cgctgccgtt ccgtcgtcaa
     1441 atatctgtac tccgtgttgc ttgtggcgca tgacgttgag ccacgtgttg cgcattatca
     1501 caaacagcca cgccttagga ttctcctggg gcgccggttg gttggcagcc ctcacggcgc
     1561 gcaaataggt ttcctggacc aggtcttccg cttcagtacg gtcgcgcgtg agcgtcatgg
     1621 cgtagccata gagcgcatcg agatgctcca gcatcgtggc ggc
//
LOCUS       DASWTX010000024         3693 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_347066, whole genome shotgun sequence.
ACCESSION   DASWTX010000024 DASWTX010000000
VERSION     DASWTX010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3693
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347066"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..411
                     /gene="purH"
                     /locus_tag="VGD38_00335"
     CDS             <1..411
                     /gene="purH"
                     /locus_tag="VGD38_00335"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: protein motif:HMM:NF013931.4"
                     /note="involved in de novo purine biosynthesis; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEY0726483.1"
                     /translation="ADDHTLDPEQLKVVTTRKPSDEEIRALLFAWTVCKHTKSNAIVY
                     ARADQTVGVGAGQMSRVDSVKIGAMRAQIPVAGSVLASDAFFPFRDGLDEAARHGITA
                     VIQPGGSVRDDEVIAAANEHGLAMVFTGVRHFKH"
     gene            428..1384
                     /locus_tag="VGD38_00340"
     CDS             428..1384
                     /locus_tag="VGD38_00340"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEY0726484.1"
                     /translation="MADNENSIRCRYCGQRNQIRPESGDARCGRCRLLLSDAPHKKFA
                     RLDKDQYIHPADRRALAALRQIPGIDTALKKLLAVTGESALRVIFTASAVKVTPTQCP
                     DLYAKLQIACTTLGVDMPELFVQQNPVVNAFTGGVERPVIVLYSQLIERLSDEETLAV
                     IAHEVGHIHAEHVLYLTAARLIEFLAKSAVLASPLTFIIKEILTMSMRAALLAWARKA
                     ELSCDRAALLVTQDANIIGRTMMKLSGGTFASRVDYDQFLAQARDFQKNYDEKALDRF
                     WADVITSGLSHPFPVWRVSEILQWVESGEYKALMTSPESAAA"
     gene            1434..2198
                     /locus_tag="VGD38_00345"
     CDS             1434..2198
                     /locus_tag="VGD38_00345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002487914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HEY0726485.1"
                     /translation="MLQNKTGIIFGVANKRSIAWATAQAMHEAGARLAFTYQGDRLKE
                     NVESLTNESMPGSLLLSCDVTKQEEVEETFRRLAHEFGRLDFLIHSIAFAPREALGGE
                     YLDTSREAFLTALEISAYSLAQLSRAAVPLMTEGGSIVTMSYYGAEKVVAGYNVMGVA
                     KAALEASTRYLAKDLGPRNIRINAISAGPIQTLSARGVSDFSTMLKHHAERAPLGRNV
                     EPREVGNTAVFLCSPMASGITGEVIYVDCGYNIMGI"
     gene            2206..2961
                     /locus_tag="VGD38_00350"
     CDS             2206..2961
                     /locus_tag="VGD38_00350"
                     /inference="COORDINATES: protein motif:HMM:TIGR00730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEY0726486.1"
                     /translation="MDEEQKEITRPPGSTQDEQLLESPRPDEFTHTDTWRVFRIMGEF
                     VEGFDELATLTRGVSIFGSARSKPDDPDYQAAMETAALLAAEGFAVITGGGPGIMEAA
                     NRGAFEAGGLSIGCNIELPFEQRPNAYQTRSLKFKYFFVRKMMFVKYSLGFIIFPGGF
                     GTFDELFEALTLIQTRKIRNFPVVLFGTQYWTGLLEWFKQSVLPGGKISDLDLNLFHV
                     TDSPQEVIEIMNRSQSSLGELDGHFSDEIRFPS"
     gene            complement(2958..3284)
                     /gene="cutA"
                     /locus_tag="VGD38_00355"
     CDS             complement(2958..3284)
                     /gene="cutA"
                     /locus_tag="VGD38_00355"
                     /inference="COORDINATES: protein motif:HMM:NF015077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010038 - response to metal ion [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent-cation tolerance protein CutA"
                     /protein_id="HEY0726487.1"
                     /translation="MPGEEAIVVFMTAASGEEATRLADLLVGAHLAACVQILPEMESV
                     YRWEGKIERQSEILLIAKTTTAKFAELEREVRALHSYETPEIVAVPMVAGSSPYLAWL
                     FDSLNP"
     gene            complement(3287..>3693)
                     /locus_tag="VGD38_00360"
     CDS             complement(3287..>3693)
                     /locus_tag="VGD38_00360"
                     /inference="COORDINATES: protein motif:HMM:NF020967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2007 domain-containing protein"
                     /protein_id="HEY0726488.1"
                     /translation="LMFCPTCESEYEEGITRCPDDGSALVERLTPENTVHDNSEARFV
                     SLYKLGSPAEAEMVNDIFQKNGIRSVIKSGGADAFSPLLSATAEGAEIFVDERDADRA
                     AEMYNAFFGDDTSPLTGGSIEEEDEEERLEDR"
BASE COUNT          769 a         1105 c         1059 g          760 t
ORIGIN      
        1 gccgacgatc acacactcga tccggagcaa ctaaaagtcg tcactacacg taaaccgagt
       61 gacgaggaga tacgcgcgtt gctgttcgcc tggaccgttt gcaagcacac gaaatccaac
      121 gcgatcgtct acgcgcgcgc cgatcaaacc gtcggcgtcg gcgccggaca gatgtcacgc
      181 gttgactcgg tgaagatcgg cgccatgcgc gcgcaaatac cagtcgcggg ctcagtgctc
      241 gcgtcggacg ctttcttccc ctttcgcgac ggtctcgacg aggccgcgcg ccacggcatc
      301 acggctgtca tccaaccagg cggctcggtg cgcgacgacg aagttatcgc cgccgccaac
      361 gagcacggtc tcgcgatggt ctttacaggt gtgaggcatt tcaaacactg atattatgag
      421 caccaacatg gctgacaacg aaaactcaat ccgctgccgt tactgcggtc aacgcaatca
      481 aatccgtccc gaatcaggag acgcacgttg cgggcgctgc cgtttgcttt tgtccgacgc
      541 gccacacaaa aaattcgcgc gtctcgacaa ggatcaatac atccatcccg cggatcgccg
      601 cgcgctcgct gcgctgcggc aaattcccgg catcgacaca gcgctcaaga aactcctcgc
      661 cgtcaccggc gagtcagccc tccgcgtcat ctttactgcg agcgccgtga aggtcacgcc
      721 gacgcagtgt cccgatctct acgcgaagct gcagatagcg tgcaccacgc tgggtgtcga
      781 tatgccggag ttgttcgtgc aacagaaccc ggtcgtgaat gcgttcacgg gcggcgtcga
      841 gcgtccggtg atcgttttgt actcgcagct catcgagcgt ttgagtgacg aggaaacact
      901 ggccgtcatc gcgcacgaag tcggacacat tcacgccgaa cacgttcttt acttaaccgc
      961 ggcgcgtttg atcgagtttc tcgcaaagag cgccgtgctc gcgtcgccat tgaccttcat
     1021 catcaaagaa attctaacga tgagcatgcg cgccgcgctg ctcgcctggg ccagaaaggc
     1081 cgagctctcc tgcgatcgcg cagcactact cgtgacgcag gacgcaaaca tcatcggacg
     1141 cacgatgatg aaactcagcg gcggcacctt tgcttcgcgc gtcgactacg atcagtttct
     1201 cgcgcaggca cgtgacttcc agaagaacta cgacgagaaa gcactcgatc gtttctgggc
     1261 cgacgtgatc acgtccggct tgagccatcc cttcccggtg tggcgcgttt cggaaatttt
     1321 gcagtgggtc gaaagtgggg aatacaaagc tctcatgact tcacctgaaa gcgcagccgc
     1381 ctaaaagcgg agctataggt cctataagtc tataggacct atttctgaca atcatgcttc
     1441 aaaacaaaac cggaatcatt ttcggcgtag ccaacaagcg ctccatcgcg tgggccactg
     1501 cccaggccat gcacgaagcg ggcgcgcggc tcgctttcac ttatcagggc gatcgattga
     1561 aggagaacgt cgagagtttg acgaacgagt cgatgccggg ctcgttgctg ctttcgtgcg
     1621 acgtgacgaa acaggaggaa gtcgaggaaa cgtttcgccg cttggcgcac gagtttggcc
     1681 ggctcgactt cctgattcac agcatcgcct tcgcgccgcg tgaggcactc ggcggtgagt
     1741 atctcgacac cagccgcgaa gcgtttctga ccgcgctcga gatcagcgct tactcgctcg
     1801 cgcaactctc gcgcgcagcg gtgccgttga tgaccgaagg cggaagcatc gtcacgatgt
     1861 cttactacgg cgcggagaag gtcgtggccg gttacaacgt gatgggtgtc gcgaaggccg
     1921 cgctcgaagc cagcacgcgt tatctcgcga aggatctcgg accacgtaac attcgcatca
     1981 acgccatcag cgccggcccg attcaaacgt tgtcggcgcg tggcgtttct gatttcagca
     2041 cgatgctgaa gcatcacgcc gaacgcgcgc cgctcggacg caacgtcgaa ccgcgcgaag
     2101 tgggaaacac ggctgtcttt ctctgcagcc cgatggcttc gggaatcacc ggcgaggtga
     2161 tttacgtcga ctgcggttac aacatcatgg gtatctgagg cgggcatgga cgaagagcag
     2221 aaagagatca cccggccgcc cggatcgacg caggacgagc aactactcga gagcccgcgg
     2281 cccgatgagt ttacgcacac cgatacgtgg cgtgtgtttc gtatcatggg cgagtttgtc
     2341 gaaggcttcg acgagctcgc gacactcact cgcggcgtct caatcttcgg ttcagcgcgg
     2401 tccaagccgg acgatcctga ttaccaggcc gcaatggaaa cagcggcact gttagctgct
     2461 gaaggtttcg ccgtcatcac cggcggtgga ccaggaatca tggaagccgc gaaccgcggc
     2521 gcgttcgaag cgggcggtct ttcgatcggc tgcaacatcg aactgccgtt cgaacagcgt
     2581 cccaacgcct accagacgcg cagtctcaag ttcaaatact tcttcgtgcg caagatgatg
     2641 tttgtgaagt acagcctcgg attcatcatc ttccccggcg gcttcggcac gtttgacgag
     2701 ctcttcgaag cgctcacgtt gatccagacg aggaagattc gcaacttccc cgtcgtgctg
     2761 tttgggactc aatactggac cggattactc gagtggttca aacagagcgt gctgccgggt
     2821 gggaagatct cagatctcga tctcaacttg tttcatgtga ctgactcgcc gcaggaagtg
     2881 atcgagatta tgaatcgcag tcagagttcg ctcggcgagt tggatgggca cttctcagac
     2941 gaaattcgct ttcccagtta aggattcagg ctgtcgaaga gccacgcgag gtagggactg
     3001 gagccggcga ccatcggcac tgcgacgatc tcgggcgttt cgtaactgtg cagcgcgcga
     3061 acttctcttt ccaactccgc aaacttcgcc gtagtcgtct tcgcgattaa cagaatctca
     3121 ctctggcgtt cgatctttcc ttcccagcga tagaccgatt ccatttccgg caggatctgc
     3181 acgcacgcgg cgaggtgtgc gccgacgagc agatcggcga ggcgcgtcgc ttcttcaccg
     3241 ctcgccgcgg tcatgaaaac tacgattgct tcttcgcccg gcattgctat ctatcttcaa
     3301 ggcgctcttc ttcatcttct tcttcgatcg agccgccggt gagtggcgac gtgtcgtcgc
     3361 cgaagaacgc gttgtacatc tcggccgcac ggtccgcgtc gcgctcgtcg acgaaaatct
     3421 ccgcgccttc cgctgttgcc gagagcagcg gtgaaaacgc gtcggcgcca ccggacttga
     3481 tcaccgaacg gatgccgttc ttttgaaaga tgtcgttgac catctccgct tcggcggggg
     3541 atccgagttt gtagagcgag acgaagcgcg cctcgctgtt gtcgtgcacg gtgttctcgg
     3601 gcgtgagccg ctcgactaac gccgagccgt cgtcaggaca gcgagtgata ccttcttcgt
     3661 attccgattc acacgtaggg caaaacataa gcg
//
LOCUS       DASWTX010000025         3499 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_151922, whole genome shotgun sequence.
ACCESSION   DASWTX010000025 DASWTX010000000
VERSION     DASWTX010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3499)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3499)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3499
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151922"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..473
                     /locus_tag="VGD38_00365"
     CDS             <1..473
                     /locus_tag="VGD38_00365"
                     /inference="COORDINATES: protein motif:HMM:NF014796.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Fe-Mn family superoxide dismutase"
                     /protein_id="HEY0726489.1"
                     /translation="RLAAMLADKDLPPYIYGDLKREELVRTGSVVLHENYFANLGGDG
                     KASGKALDLIKQWFGSYEQWEAEFRKTANALSGGSGWTILSYNLHTGEVHNYWAWDHM
                     HNAPFGYPLLVLDMYEHSYHMDYGAAAAKYVDAFMQNVNWDEVNRRVETIGGRK"
     gene            479..1273
                     /locus_tag="VGD38_00370"
     CDS             479..1273
                     /locus_tag="VGD38_00370"
                     /inference="COORDINATES: protein motif:HMM:NF016041.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HEY0726490.1"
                     /translation="MQTILTDQARLVMLIALCGLLWALESIVPLYRFRYSRVRHALPN
                     VALTLLLVFTNLSLSFSSAYLADFSVRNGIGLFPVLGLSSLAQIVFGVLALDLFAYFA
                     HVLLHKSWLGWQFHRVHHSENAVDVTTAFRQHPGESVWRIFWQLAGIMVCGIPLWVVV
                     VYLILSGLNAELEHANIRLNHRVDWLLRLVIVTPNMHKVHHSRDQQETDSNYSNIFSL
                     WDRLFGTYTSATDFRKLTYGLDGFDAQERQTLTGLLKMPFVNYNRV"
     gene            1661..1960
                     /locus_tag="VGD38_00375"
     CDS             1661..1960
                     /locus_tag="VGD38_00375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726491.1"
                     /translation="MTDVNAPDGNPYGATMNFGRAEFMTVPGETPKPDDIPIKPGETY
                     VFKLSKPTADGLESFARDYDLPPLKGVMIWFNFLSFGDGTGWEGPQGRRFVAKKP"
     gene            complement(1991..3049)
                     /locus_tag="VGD38_00380"
     CDS             complement(1991..3049)
                     /locus_tag="VGD38_00380"
                     /inference="COORDINATES: protein motif:HMM:NF016241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF481 domain-containing protein"
                     /protein_id="HEY0726492.1"
                     /translation="MKQQLFALLLILAPLTGDALGDQILLKNGDRLTGTIVKSDGKTI
                     VFKSDLVGEVSVALDSVTDVTSDKTVYVTLADGRTVAGVVNAKDGQAEIRSSSGPVVV
                     ERSAITIIRSEAEQQLYESTLNPGWLQQWTGGADLGLALTRGNSHTTNFALGMAMSRE
                     TLLDKTSLYGAAVYNRETSDGVSRTVANTFRFGGRYDRNINRRWFGYGFTDLEHNGLQ
                     ELDLRWVLGGGLGYRAIRNERTKLDLLGGLDMSREYFEGDGNDRTSLEAQLGQTLDHQ
                     FTPRVSFKEQLFFFPNLSEGGEYRINFDASLVIDINRRLAWQVTLSDRYLSDPPGGFK
                     QNDLLLTTGLKIKLGLLR"
     gene            complement(3197..>3499)
                     /locus_tag="VGD38_00385"
     CDS             complement(3197..>3499)
                     /locus_tag="VGD38_00385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726493.1"
                     /translation="GQVFFNAPPGTTGNLERNFLNGPLFVNWDAGLMKNFYFGETTRF
                     QIRAEAFNVLNRANFFIGNVSFVPSGTSFDINSTNFGRVNSTFDPRIIQFVGRFEF"
BASE COUNT          804 a          950 c          951 g          794 t
ORIGIN      
        1 aacggcttgc ggcgatgctg gcggacaaag atctgccacc ttacatctat ggcgacttga
       61 aacgtgaaga gctggtccgc acagggtcgg tcgtgctgca tgaaaactat ttcgccaatc
      121 tcggcggcga cggaaaagcg agtggcaagg ccctcgatct aatcaagcaa tggtttggaa
      181 gttacgagca gtgggaggca gagttcagga agactgcgaa cgcgcttagc ggcggctcgg
      241 gttggaccat tctttcttac aacctgcaca cgggtgaagt tcacaactac tgggcctggg
      301 accacatgca caacgcgccg ttcggctatc cgctgctggt cctcgatatg tacgaacact
      361 cttatcacat ggactatggc gcggctgcgg cgaagtacgt cgacgcgttc atgcaaaacg
      421 tgaattggga tgaagtgaac cgcagggttg aaacgatcgg cggccggaag tgagaattat
      481 gcaaactata ctgacagatc aagcgcgact cgtaatgttg attgccttgt gtggtcttct
      541 ttgggcgttg gagtcgatcg ttccgcttta tcgttttcgt tacagccgcg tgcgacatgc
      601 gctgccgaac gtagcgttga cgttgttgct tgtgttcacg aatctgagcc tctcgttttc
      661 ctcggcgtac ctggccgact tttcagtccg gaatggaatc ggtctcttcc ctgtcctggg
      721 tctctcgtcg ttggcccaga tcgtttttgg cgtgctggcg ctggatctgt tcgcttattt
      781 cgcgcacgtt ctgttgcaca aatcgtggct tggctggcag tttcatcgcg tgcatcattc
      841 cgagaacgca gtcgacgtaa ccaccgcgtt tcgccaacat ccgggcgaga gtgtttggcg
      901 catattctgg cagttagccg gaatcatggt atgcggaatc ccgctctggg tcgtcgtggt
      961 ttacttgatt ctttcgggcc tcaacgcgga actggaacac gcgaacatca gactgaacca
     1021 tcgcgtcgat tggcttctgc gtctcgtgat agtcacgccg aacatgcaca aggtgcatca
     1081 ctcacgcgac cagcaagaaa cagattcaaa ctactccaac atcttctctc tttgggacag
     1141 actcttcggc acctacacgt ccgcgacgga cttccgcaaa ctcacctacg gcctcgacgg
     1201 gttcgacgca caagaacgcc aaacgctcac cggtctctta aagatgccct tcgtgaacta
     1261 caaccgcgtg tgaagaggaa cacagaccag ttttggacac tgcctcatca gattattgac
     1321 aggaccaaat cgcagacgta catttgctta actctcatgc gacgaggtca tggatcctga
     1381 aaaacctcag catattgacg aagattttac tcgtgcttgc ggtgggaatg tttgcgttca
     1441 ccatcgttaa gatcactatc tcaacctcgg cccagtcagc acaatccaag cgacagctcg
     1501 acgatcgtgt gccggcgcat cttcctatca aaatcaaaat aaagaaagac aaggaggaag
     1561 cctttgaaga cctaaataat gagcattggc ccagggattt ccaagtagaa gtcaagaata
     1621 ccggcgaccg gctatttatg cattgtctct ggtgtgggaa ttgaccgacg tcaacgcgcc
     1681 tgatggcaat ccctacggcg ctaccatgaa tttcggaaga gctgagttca tgactgttcc
     1741 gggtgagacg ccaaagcctg acgacattcc cattaagccc ggcgaaactt atgttttcaa
     1801 actttcaaag cctacggctg atggtttgga gagctttgcc agggactatg atttgccgcc
     1861 gttaaagggg gttatgatct ggttcaattt cctatcgttc ggcgatggta cgggatggga
     1921 aggtcctcag gggcgacgct tcgtcgcgaa aaagccgtag tgtttgattc cccaaacaac
     1981 ctcgaaacct tcacctcaac agtccaagtt tgatcttcaa gcccgtagtc agcaacagat
     2041 cgttctgctt gaagccgccg gggggatcgg agaggtagcg atcgcttagg gtgacttgcc
     2101 aggcgaggcg gcggttgatg tctatcacga gcgaggcgtc gaagttaatg cggtactcgc
     2161 cgccttcaga gagattcggg aagaagaata attgctcctt gaacgacacg cgcggggtga
     2221 attgatggtc cagagtctga ccgagctgag cttcgagtga ggtgcgatcg ttgccgtcac
     2281 cttcgaagta ctcgcggctc atgtccagac cgccgagcag atcgagcttc gtgcgctcgt
     2341 tgcggatcgc gcgataacca agaccaccgc cgagaaccca acgcaggtcc agttcctgaa
     2401 ggccgttgtg ctccagatcg gtgaagccgt aaccaaacca acggcgattg atgttgcgat
     2461 cgtaacgccc gccgaagcga aacgtattcg ccaccgtgcg cgacactcca tcactggtct
     2521 cgcggttgta aaccgcagcg ccgtagagac tcgtcttgtc gagcagagtc tcgcgcgaca
     2581 tcgccatgcc cagcgcaaaa tttgtcgtgt gtgagtttcc gcgcgtgagc gccagtccga
     2641 gatcggcgcc gccggtccac tgttgcagcc aacccggatt caacgtgctt tcgtagagtt
     2701 gctgttcggc ctcggaacga atgatcgtga tagcggatcg ttcgacgacg acgggtccgc
     2761 tactcgatct gatctccgcc tgcccatctt tcgcattaac gacaccggcg acagtgcggc
     2821 cgtcggcaag cgtcacgtaa acagtcttgt cgctggtcac atcagtcacg ctgtcgagcg
     2881 caacgctgac ttcacccacc agatcgctct tgaacacgat cgtcttaccg tctgatttaa
     2941 caatcgttcc cgtcaaacga tcgccgttct tgagcaggat ctgatcgccg agggcgtcgc
     3001 cggtcagcgg cgccagaatg aggagcagtg caaagagttg ttgtttcata cccgcgaaat
     3061 actgtttttc gccgatcccg atcaatacca agaaatacgg attttgtgcc gcaggatcat
     3121 gtagacaaaa aaggcgcccg caagtcctgc ccgggacttg cgagcgcaaa acgggagacg
     3181 ccctgaagaa accccgctag aactcaaatc gcccgacgaa ctggatgatc cgcggatcga
     3241 aggtcgagtt gacccgtcca aagttcgtcg agttgatgtc gaaactagtt ccagaaggaa
     3301 caaaagacac gttgccgatg aagaaattgg cccggttcag cacgttgaac gcttcggccc
     3361 tgatctggaa cctcgtcgtc tcgccgaagt agaagttctt catcagtccc gcatcccaat
     3421 tcacgaagag tggaccattc aggaagttcc gttcgagatt gccggtcgtt cccggaggcg
     3481 cgttgaaaaa cacctggcc
//
LOCUS       DASWTX010000026         2748 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_216923, whole genome shotgun sequence.
ACCESSION   DASWTX010000026 DASWTX010000000
VERSION     DASWTX010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2748
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216923"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..466
                     /gene="nth"
                     /locus_tag="VGD38_00390"
     CDS             <1..466
                     /gene="nth"
                     /locus_tag="VGD38_00390"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: protein motif:HMM:NF012933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140078 - class I DNA-(apurinic or
                     apyrimidinic site) endonuclease activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEY0726494.1"
                     /translation="YLKVPASELERDIHSTGFFRNKTKSIQGTAKKLIESFGGEVPHT
                     MDELLELPGVARKTVNVVLGNAFGIKAGVVVDTHVTRLSHRLGFSQEKTAEKIELDLI
                     EIVPRKDWVLFPHLMIYHGRQICKARGPLCEECVVEKQCPSSYLKTGVMPGS"
     gene            complement(486..1895)
                     /locus_tag="VGD38_00395"
     CDS             complement(486..1895)
                     /locus_tag="VGD38_00395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726495.1"
                     /translation="MLKTLSSIFCLVVLSTTVSADTKVKIRQTSGGQTYENTSYIKGK
                     RQRSETNGGQMVNITQCDLRRNIMVMPATQTYMIQPYDQPATSTAASTANRPTGPSTP
                     TTKGGVVTSTVTTRDTGERKQMFGYTARRIITMMVMDSSPDACSPTKMKMETDGWYID
                     AAFALDCDLGRTYTPPQTAASGGCRDRYEMKQVGAAKRGYPVYEKMTMFGPDGRETYT
                     TINEVIEFSQATLDPSLFEPPAGYREVSDFASMYGTPTNPSVNVKTDPSSTSNIPSSN
                     PSNSSSTKAAEALPAKKAGVIRIGVVAAKADKTAEGMNAANLATAVQATLQEKLKAPN
                     VEAVPIQATVLNQIEAEARQKECDYIVYTTVSHKKGGGGFGSVFGSTAAQVAAATVPY
                     GGSTTAAIATNTAASVVVADIKAKDELTVDVRLEKPGAGYPAFSKQYKGKAKSAGEDI
                     VTPPTTQAAQGIIEAATKQ"
     gene            1993..>2748
                     /locus_tag="VGD38_00400"
     CDS             1993..>2748
                     /locus_tag="VGD38_00400"
                     /inference="COORDINATES: protein motif:HMM:NF027219.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative zinc-binding metallopeptidase"
                     /protein_id="HEY0726496.1"
                     /translation="MAYRFPWQRLTDEQLLDLRICDLPIKIKGSFLEPHIIRLYCELN
                     ARGIRFKPHVWLAEEWFSPDGVPGIAIPFYLAHPRLVKLERRQMLEVEGGTDKECMRI
                     LRHEAGHALDTAFRLHFKRQHRELFGSFAQPYPDFYKPRPKSRRYVLHLPAWYAQAHP
                     AEDFAETFAVWLTPRSQWRRRYRGWPALQKLEYIDELMEQIAGTKPKNRTRTKVEPLT
                     ALRITLREHYRRKRERYDFEWPAVYDRDLRRIFS"
BASE COUNT          504 a          762 c          843 g          639 t
ORIGIN      
        1 ctatctgaaa gtgccggcga gcgaactcga aagagatatt cactcgaccg gcttctttcg
       61 caacaagacg aagtcgattc agggcactgc gaagaagctg atcgagagct ttggcggtga
      121 ggtgccgcac acgatggacg agctgctcga gcttccgggc gtcgcacgca agacggtgaa
      181 tgtcgtgttg ggtaacgcgt ttgggatcaa agcgggtgtg gtggtcgata cgcacgtgac
      241 gcgtttgtcg caccggctcg ggttctcgca ggagaagacg gcggagaaga tcgaactgga
      301 cttgatcgag atcgtgccgc gaaaggattg ggtgctgttt ccgcacttga tgatttatca
      361 cgggcggcag atctgtaagg cgcgtggtcc attgtgtgaa gagtgcgtgg tggaaaaaca
      421 atgcccgtct tcatatttga agacgggcgt tatgcctgga agttaggcca cagatcgaac
      481 agatcttatt gctttgtcgc tgcttcgatg atgccttgtg cggcttgcgt agtcggcggc
      541 gtgacgatgt cttcaccggc tgactttgcc ttgcctttgt attgcttgct gaacgccgga
      601 taccctgcgc cgggtttctc cagcctcacg tcaacggtta actcatcttt cgctttgatg
      661 tcggcgacga cgacgctggc ggcggtgttt gtggcgatcg ctgcggttgt gctgccgccg
      721 taggggaccg ttgccgccgc gacttgcgcg gctgtgctgc cgaatacact accgaatccg
      781 ccgccgcctt tcttgtgcga gacggtcgtg tagacgatgt agtcgcattc tttctggcgt
      841 gcttcggctt cgatctggtt gagaactgtt gcctgaatgg gcacggcttc gacgttcggc
      901 gctttgagtt tctcttgtag tgtggcctgg actgcggtcg cgaggttcgc ggcgttcatt
      961 ccctcagcgg ttttatcggc tttggccgcc acgacgccga tacgaatgac gcccgctttc
     1021 ttcgcgggta gcgcttccgc ggctttggtg gaggaggaat ttgacggatt ggaagaaggg
     1081 atattactcg tcgaactcgg gtctgtcttg acgtttacgc ttgggttagt tggcgtgccg
     1141 tacatgctcg cgaagtccga cacttcacga taacctgccg gtggttcgaa caagctcgga
     1201 tcgagcgtcg cctgcgagaa ctcgatcact tcgttgatcg tcgtgtacgt ctcacggccg
     1261 tcgggaccga acatcgtcat cttctcgtaa actggataac ccctcttcgc cgcgccgacc
     1321 tgtttcatct cgtagcgatc gcggcaacca ccgctcgccg ctgtttgcgg cggcgtgtaa
     1381 gtgcggccga ggtcgcaatc gagcgcgaaa gccgcatcga tgtaccagcc gtcagtctcc
     1441 atcttcatct tcgtgggcga gcacgcgtcg ggcgacgagt ccatcaccat catggtgatg
     1501 atgcgccgcg ccgtgtagcc aaacatctgt ttgcgctcgc cggtgtcgcg cgtggtgacg
     1561 gtcgaagtca caacgccgcc tttcgtggta ggcgtcgacg ggccggttgg acggttagca
     1621 gtgctggcgg cagtcgacgt ggccggctga tcgtacggct gaatcatgta cgtctgtgta
     1681 gccggcatga ccatgatgtt tcgccgcagg tcgcactgcg tgatgttgac catctggccg
     1741 ccgttggttt cgctgcgctg ccgtttgcct ttgatgtagc tggtgttttc gtaagtctgg
     1801 ccgccgctgg tttggcggat tttgaccttg gtgtccgcgc tgaccgtcgt cgaaaggacg
     1861 acgagacaga aaatgcttga tagtgttttt agcattggta ctcccggttt gatctcgatc
     1921 tgaaacgcgc aaggcggaag ggaaaagtac cacgtttgta tggattaagc gaggcggcta
     1981 gaatgtgccg ccgtggcata cagattcccc tggcaacgtc tcacggatga gcagttgcta
     2041 gatctgcgca tttgcgactt gcctatcaaa atcaagggct cctttctcga accccacatc
     2101 atacgccttt actgcgagct gaacgcacgc ggaatacgct tcaagcccca tgtttggctg
     2161 gccgaagagt ggttttcgcc cgacggcgtg cccggaatcg cgatcccgtt ttacctcgcc
     2221 catccgcggc tggtgaagct cgaacgccgc cagatgctgg aggtcgaggg cggcacggac
     2281 aaggagtgca tgcgcatcct gcggcacgaa gccggccacg cgctcgacac ggccttccgg
     2341 ctgcacttca aacggcaaca ccgcgaactg ttcggctcgt ttgcccagcc gtatcccgac
     2401 ttctacaaac cacgcccgaa gagccggcga tacgtgttgc acttgcccgc gtggtacgcg
     2461 caggcgcatc cggcagaaga cttcgcggaa acgtttgccg tgtggctcac gccgcgttcg
     2521 caatggcgac gacgctatcg cggctggccc gcgttgcaaa agctcgagta catcgacgag
     2581 ctgatggaac agattgcggg gacgaaacca aagaaccgca cgcgcacgaa agtcgaacca
     2641 ctcactgcac tgcgcattac attgcgcgaa cactatcgcc gcaaacgcga acgttacgac
     2701 ttcgaatggc ccgctgttta cgatcgcgat ctgcgacgga tcttttcc
//
LOCUS       DASWTX010000027         2680 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_43852, whole genome shotgun sequence.
ACCESSION   DASWTX010000027 DASWTX010000000
VERSION     DASWTX010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2680
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43852"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..812
                     /locus_tag="VGD38_00405"
     CDS             <1..812
                     /locus_tag="VGD38_00405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726497.1"
                     /translation="RPAKDKPTVTELFIEQPQGNVVLKKVVDDATAAAAPNAPITIDD
                     LLTKMIAAYGGEENLRKHKSSLATVEVDLENQGVMAKGTISARAPNMSASEMTFTALG
                     KKLGSMNSYFDGTAGGEIISFAPAETYSGKRLEDIKAGSDFYDVLNWKKNYQKITFKR
                     MGKVGDEEVYIIERKNDKGTPITDYISTKSFLVLRRDSVVANETAGIELPQTENFSDY
                     RNVDGVMVPFKMVSNNIANGDIVLRIVDLKFDVDIPETVFRKPAMVASENK"
     gene            1155..>2680
                     /locus_tag="VGD38_00410"
     CDS             1155..>2680
                     /locus_tag="VGD38_00410"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0726498.1"
                     /translation="MSKLLSLLIAGCLCVVAANVRAQDVLTKGSIGGTVTDPAGAAVP
                     GATITVSGPQVQRTATSNDSGVFRVENLEPGTYTVRVEQSGFKASVANNVIVNVGRES
                     TLSLQLEPGEISATVDVTASAGGGIDQQSTATGQNLNDQLFQNVPVQRQVSSLFYLAP
                     GATDSINGGRDNPSIAGGSALDNLYVADGVNITNSAFGGIGTFSRSYGALGTGINTSF
                     IKEVQVKTGGFEPQYGQSIGGIVNIITQSGGKEYHGSIYGFARPQAFEATRRQADDFR
                     TNKQGRLLHEENYDVGADFGGYVPGLRDNLFFFGSFNPTVRREIVTGVRANENDIAGG
                     FGDVVNSGLFLQRGEFARRYRTYNYADKLDYVINPNHQVTFSIFGDPTETNLSSFAFL
                     NIDNNTADSILEYGTRNMALRYNGSLSPTWTLNSSFSQGRSTFNETGFADVNQIQIRN
                     PIDPVRGNYNAIGRGFFEPTESTNWKWDINTQKVWNRWGQHTLGLGYTYQRSLYSGSR
                     "
BASE COUNT          664 a          765 c          704 g          547 t
ORIGIN      
        1 tccgtcccgc aaaagacaaa ccaaccgtga cagaactctt catcgaacag ccgcaaggca
       61 acgtcgtcct caagaaggtc gtagatgacg ccactgctgc cgcagcacca aacgcgccga
      121 tcacgatcga cgatcttcta acaaagatga tcgcggctta cggcggcgag gaaaacctgc
      181 gcaaacacaa atcttcatta gccacggtcg aagtcgatct cgaaaaccag ggcgtgatgg
      241 caaagggcac gatcagcgcg cgtgcgccaa acatgtcggc gagtgaaatg acgttcaccg
      301 cgctcggcaa aaaactcggt tcgatgaaca gctacttcga cggcacagcc ggcggcgaga
      361 tcatcagttt tgcacccgcc gaaacttaca gcggcaaacg cctcgaagac atcaaagccg
      421 gctccgattt ttacgacgtc ctcaactgga aaaagaacta ccagaagatc accttcaaac
      481 gcatgggtaa ggtaggcgac gaagaggtct acatcatcga gagaaagaac gacaaaggca
      541 cgccgatcac ggattacatt tccaccaagt cgttcctcgt gttgcgtcgt gattccgtcg
      601 tggcgaatga aaccgccggc atcgagttgc cgcagacgga aaacttcagc gactatcgca
      661 acgtcgacgg cgtgatggtt ccgttcaaga tggtttcaaa caacatcgcc aacggcgata
      721 tcgtgttgcg cattgtcgat ctcaagttcg acgtagacat tcccgaaact gtttttcgca
      781 agcccgcgat ggtggcaagc gagaacaaat aaacgtgaag tttacagttt tggaattaac
      841 caagctttgg atcgcaggcg tccatataaa tggtgtctga gatcttggta gcttcaaagt
      901 acctcactcg aagtccacaa cggcgcggtc gtggtcctgc gaccgagtag aattacttag
      961 ccctcgatct ccaccctttc gtagatcttc caactggcat tttcattgct tctacaccac
     1021 acgtcagtca gtctccccga cttatttgca attcagtttc tctgaaacac cccgtgaaag
     1081 agatgctctt cccctcacgc tcgcatggac gatgcggagg tgttggaagt ggaggaaagg
     1141 aagaagtaca agctatgagt aagcttttgt cattattgat agccggctgt ctatgcgttg
     1201 tggcagcaaa cgtccgtgca caggacgtgt taacgaaagg ctcgatcggc ggcacagtca
     1261 ctgaccccgc cggcgcagca gttccgggcg caacgattac cgttagcggc ccgcaagttc
     1321 aaagaaccgc gacctcaaat gatagcggtg tgttcagagt cgaaaacctc gagcccggta
     1381 cttacacagt gcgtgtcgag caatccggct tcaaagcttc agtagcgaac aacgtgattg
     1441 tgaacgttgg ccgtgaatcg acgcttagtt tacaactcga accaggcgag atctccgcga
     1501 cagtcgacgt cactgcaagc gccggcggcg gtatcgatca acaaagcact gcgacaggtc
     1561 agaacctgaa cgatcaactt tttcagaacg ttccggttca acgacaagtc tccagtctgt
     1621 tctatcttgc gcccggagca acggacagca tcaacggcgg acgtgacaat ccgtcaatcg
     1681 ccggtggttc cgcgctcgac aacctttacg ttgctgacgg cgtgaacatc accaactccg
     1741 cgttcggcgg catcggtacg ttctcacgtt cgtacggcgc gttgggcacc ggcatcaaca
     1801 cgtcgttcat caaggaagta caggtgaaga ctggcgggtt cgagccgcag tacggccagt
     1861 cgatcggcgg catcgtgaac atcatcacgc agtcgggcgg caaggagtat cacggttcga
     1921 tttacggctt cgcacggccg caggcattcg aagccacgcg ccgtcaggcc gacgactttc
     1981 gcaccaacaa gcaaggcagg ttgctccacg aagagaacta cgacgtgggc gctgatttcg
     2041 gcggctacgt gcccggcttg cgcgacaacc tctttttctt cggttcgttc aacccgacag
     2101 tgcggcgtga aatcgtcacc ggcgtgcgcg ccaacgagaa cgacatcgca ggcggatttg
     2161 gcgacgtcgt taactccgga ttgtttctgc agcgcggtga gttcgcgcgg cgttatcgca
     2221 cgtacaacta cgccgacaaa ctcgactacg tgatcaatcc gaaccatcag gtaacgtttt
     2281 cgatctttgg cgacccgacc gaaacgaacc tttcgtcgtt tgcgttcctg aacatcgaca
     2341 acaacactgc cgacagcatt ctcgagtacg gcacgcgcaa catggcgctt cgttacaacg
     2401 gttcgctgag cccgacgtgg acgttgaatt catcgttcag ccagggccgc agcacgttca
     2461 acgaaaccgg cttcgccgac gtcaaccaga ttcagattcg caatccgatc gatccggttc
     2521 gcggcaacta caacgccatt ggccgtggct tcttcgaacc gactgaaagt accaactgga
     2581 agtgggacat caacactcag aaggtctgga accgctgggg ccagcacacg ttgggtcttg
     2641 gttacacgta ccaacgttcg ctttactccg gcagccgtga
//
LOCUS       DASWTX010000028         5148 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_368813, whole genome shotgun sequence.
ACCESSION   DASWTX010000028 DASWTX010000000
VERSION     DASWTX010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5148)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5148
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368813"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(364..921)
                     /gene="mug"
                     /locus_tag="VGD38_00415"
     CDS             complement(364..921)
                     /gene="mug"
                     /locus_tag="VGD38_00415"
                     /EC_number="3.2.2.28"
                     /inference="COORDINATES: protein motif:HMM:NF007570.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000700 - mismatch base pair DNA
                     N-glycosylase activity [Evidence IEA];
                     GO_process: GO:0006285 - base-excision repair, AP site
                     formation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="G/U mismatch-specific DNA glycosylase"
                     /protein_id="HEY0726499.1"
                     /translation="MTKPWKPTKEQLLAATEKTVRDVIAPNLRVLFCGINPGLYTAAV
                     GHHFARPGNRFWPALHAGGFTDRVLSPFDERELLKSGYGITNVVMRTTATADQLTREE
                     IIAGGEQLRAKVLRYQPRVLAVLGVGAYRTAFNQPKATIGRQPETIGATILWVLPNPS
                     GLNANYQAADLARLFRELKDFADSC"
     gene            complement(928..3105)
                     /locus_tag="VGD38_00420"
     CDS             complement(928..3105)
                     /locus_tag="VGD38_00420"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0726500.1"
                     /translation="MTYKLPSRFVARITLAACVLLLVNFSTTAQTTQTPRQKSPDEVV
                     RVYTELVQTDVMVFDKQGRFVDGLTKENFELRIDGKPRPIQAFDKITAGSDEETQLAA
                     ARGATGVNPKRPAPLDRGRIVFFYLDDFHMDIAGVVAARKLITTFIEKQMGQNDQVAI
                     ASATGQIGFLQQLTNERMVLRKALERVNPGSYAVRDIERPPMTEYQAMLIERGDRSVF
                     DWFVAETLRQNPGLNRETAGQMVRGRATAIQSQAERISTNTLTGLQSLVHSARNLPGR
                     KLVFFLSGGFLIEGRRSTLTSRLRNVTNAAAKSGVVIYSMDTRGLVATLQDASTEASF
                     DPGGQLAAATSTFAELTATQDPLNALAVDTGGKALRNTNDLTQGLAPAIEETSTYYLL
                     AWKPDAETSGKFRQLEVKLVGRPDLTVRVRKGFFDVDPPEDTADSKKSKPEPAPAVKP
                     AAAKLREAITAAYPERALPILMSVDYYDVPEKGPTLSTSINLPGEFLTFGEQPDGKIQ
                     AVVDLTGVYYDEKGAVKASFLERITTTAPSLESTKNYATDIIFNYPAKLAPGLYNVRT
                     AARDEKSGRIGSVHTWIEVPDLVKKQLTISSLLLGERGQTLAHVSDTGERSPVALSAS
                     HRFKRDSTLRFLFFTYNAAPAPADQKPDVAVQVQVLRDDQPVITTALRKITTDGVGDL
                     TRVPYAAEIPMAELLPGRYMLQVSVIDRVAKQSMTRKTHFDVY"
     gene            3175..4086
                     /locus_tag="VGD38_00425"
     CDS             3175..4086
                     /locus_tag="VGD38_00425"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY0726501.1"
                     /translation="MSTGITVQLDHVRKSFGEFTAVKELSLTVRAGRVFGLLGPNGAG
                     KTTTIRMIVDITAPDSGTIELFGGRINEALQDRIGYLPEERGLYRRMRIVDQLRFFAE
                     LKNVRGKIVEKKIDEWLARVKLSEWKYKRSMELSKGMQQKIQFLTSVLHDPDLLILDE
                     PFSGLDPINVELLKDIVLDLKRAGKTIIFSTHQMEVAERLCDDICLLNRSQKVFEGSL
                     REIKSSFGRNAVAVRCEGGDGVLDDPALVSKLVRHADEAQALLAQGADAQVLLRRLID
                     SGATIGKFEMVEPSLNDIFITKVTEHA"
     gene            4083..>5148
                     /locus_tag="VGD38_00430"
     CDS             4083..>5148
                     /locus_tag="VGD38_00430"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0726502.1"
                     /translation="MTKFLAILKREYIQRVRSKMFILSTILLPAVMSLFGIAPAVILS
                     IDAGGPNRLAVVDQTGKMYTRLEEALASDEQRPDQSEQMRLRPEMEGGAFTLEQVVAI
                     GPDAGEQRAQLDARLRNREIEGYLILPPDFLRHGQAEFFNNNPGDLLRNGVLQRALNR
                     AVREQRLIEAKVDPETRQGLFQPVRLQSVKTGAAGEQRNAGDSFILVFGVGFVMYLAI
                     LMYGQIIMGAVIEEKETRIAEILFSSVKPFTLMMGKLVGVSLLALTQLAIWATAFGAF
                     AWYGVNLLQSRGVKFSLPSVPLSYYVYFALFFLLGYFIYATIYALVGSMVTTPQEGGQ
                     LAMPIILILVVSFYLFLPVSR"
BASE COUNT         1045 a         1405 c         1563 g         1135 t
ORIGIN      
        1 ctggttcgga cttcgccctg gcaacatagg ccagaggccg gaccaggggc atagccccat
       61 ttcatttttg ggaaagcctc cggcgaggcg tagcctcgcc tcacatccgg cggcggagcc
      121 gctgcggaaa catcatctcg atcctgctgc acctcgcctt ttgcaaccaa ctgcatagct
      181 gtttcaaacg ccaatcagtt ggaccggtgc acaaccgaac cagggtttca atctcgcggt
      241 cgtctacgcg tgttgatcgc tggtgtgctc ttgctgtatc cggtttgtaa gtggttcgcc
      301 ggtgtgaagc agcggcgaaa agactggtgg ctttcgtact tataagccac aggcgaacac
      361 ggactaacac gaatcagcaa agtccttcag ctcgcgaaac agtcgtgcca gatcggcggc
      421 ctggtagttt gcgttcaggc cgctggggtt ggggaggacc cagaggattg tggcgccgat
      481 ggtttcgggt tggcggccga tggtggcttt tggttggttg aaggccgtgc gataggcgcc
      541 gacgccgagc actgcaagca cgcgcggttg ataacgcagc acttttgccc gcagctgttc
      601 gccgcctgcg attatttcct ctcgcgtcag ttgatctgcg gttgcggtcg ttcgcatgac
      661 gacattcgtg atcccgtaac cgctcttcag cagttcgcgt tcgtcaaacg gcgacaacac
      721 ccgatccgta aatccacctg catgaagcgc aggccagaag cgattgccgg gacgcgcgaa
      781 gtgatggccc acggcggccg tgtagaggcc gggattgatg ccgcaaaaga gcacgcgcag
      841 gttcggagcg atcacgtcgc ggaccgtctt ctcggtcgcg gcgagcagtt gctctttagt
      901 cggtttccac ggtttggtca cgtgaggcta ataaacgtcg aagtgagttt tgcgcgtcat
      961 gctttgcttc gccacacgat cgataacgga aacttgcaac atgtaacgac ccggcaacaa
     1021 ctcggccatc ggaatctctg cggcataagg aacacgcgtc agatccccaa caccgtcagt
     1081 cgtgatcttg cgcaacgccg tcgtgatcac gggctggtcg tcacgcaaca cctgcacttg
     1141 caccgccaca tccggtttct gatccgcggg cgcgggcgcc gcgttgtaag tgaagaacaa
     1201 aaaccgcaac gtcgaatcgc gcttgaagcg atggctcgca ctcaacgcca ccggactacg
     1261 ttcgccggtg tcggaaacat gggccagggt ttgtcctcgt tcacctaaaa gcagactgct
     1321 gatggttaac tgcttcttca caagatcggg aacttcgatc cacgtgtgca cactaccgat
     1381 gcgtccgctc ttctcgtcgc gagccgcggt tctcacattg taaagtccgg gcgccaactt
     1441 cgccggatag ttgaagatga tgtcggtcgc gtaattttta gtcgattcga gtgatggagc
     1501 ggtagtagtg atgcgctcga ggaaactggc tttgacggcg cctttctcgt cgtagtaaac
     1561 gccggtgaga tcgacgaccg cttgaatctt tccatccggt tgctcgccga aagtaagaaa
     1621 ctcgccggga agattgatcg aagtcgagag cgttggtcct ttctcgggaa cgtcgtaata
     1681 atcgacgctc atcagaatcg gcaacgcgcg ttccggatac gccgccgtga tcgcctcacg
     1741 cagttttgcc gcggcgggct tcaccgccgg cgccggctcg ggcttcgatt tcttcgaatc
     1801 ggctgtgtct tccggcggat cgacgtcaaa gaaaccttta cgaacccgga cagtcagatc
     1861 gggacggccc acgagtttca cttcgagttg ccggaattta ccggaagttt ccgcgtcagg
     1921 cttccacgcg agcaggtaat aggttgaagt ctcctcgatc gccggagcta gtccctgtgt
     1981 gaggtcgtta gtgttgcgga gcgctttgcc gccggtgtcg acggcgagtg catttaacgg
     2041 gtcttgtgtc gctgtcaatt cggcaaaggt tgaagttgca gcggcgagct ggccgccggg
     2101 atcgaaagac gcttcagtgc tcgcgtcttg taatgtagca acgaggccgc gagtatccat
     2161 cgagtagatc actactccgc tcttggcggc cgcattagta acgttgcgca gcctgcttgt
     2221 taatgtgctg cgccgccctt cgatcagaaa accgccggaa agaaagaaca cgagcttacg
     2281 gccaggaaga ttccgcgccg agtgcacgag agattgcagg ccggtgagcg tattggtgct
     2341 tattcgctcg gcctggctct gtatcgccgt tgctcggccg cgaaccatct gcccggcggt
     2401 ttcgcggttc agtccgggat tctggcggag cgtctcggcg acaaaccaat caaacacgga
     2461 gcggtcgccg cgctcgatga gcatcgcctg gtactcggtc atcggcggcc gctcgatatc
     2521 gcgcaccgca tagcttccgg gattgacacg ctcgagcgcc ttgcgcagca ccatgcgctc
     2581 gttggtgagc tgctggagaa aaccgatctg gccggtggct gacgcgattg cgacctgatc
     2641 gttttggccc atctgctttt cgatgaacgt cgtgatcaac tttctggcgg cgaccacgcc
     2701 ggcaatgtcc atgtggaagt cgtcgaggta gaaaaagacg atgcgcccgc gatcgagtgg
     2761 cgccgggcgt ttggggttga caccagtggc gccgcgggcc gcggcgagct gcgtttcctc
     2821 gtcgctgccg gcggtgattt tgtcgaaagc ctgaatcggc cgcggtttgc cgtcgatgcg
     2881 caattcgaaa ttttctttcg tcagaccatc gacgaaacgg ccctgtttgt cgaaaaccat
     2941 cacatcggtc tggacgagtt cggtgtaaac acgtacaact tcatccggcg atttttgccg
     3001 aggcgtctgc gtcgtttgcg ctgtcgtgct gaagttcacc agcaacagga cacacgcggc
     3061 gagcgtgatt ctggccacaa aacggcttgg gagtttgtat gtcatagata agcagaccga
     3121 cgtacagggg agaacgcagg ggtgtaaata tattatgaga agcaaaaaaa atcgatgagc
     3181 acgggaatca ccgtacaact cgaccacgtg cgaaagagct ttggcgagtt caccgcggtc
     3241 aaggaattga gcctgacggt gcgtgccgga cgcgtgtttg gactgctcgg gccgaacggc
     3301 gcgggcaaga cgacgaccat ccgcatgatc gtcgatatca ccgcgccaga ctccggcacg
     3361 atcgaactct tcggcggcag gatcaacgaa gcgcttcagg atcgcattgg ttacttaccc
     3421 gaagaacgcg gtctttatcg tcgcatgagg atcgtcgatc aactgcggtt ctttgcggag
     3481 ctcaagaatg tgcgcggcaa gatcgtggaa aagaagatcg acgagtggct cgcgcgcgtg
     3541 aagctttccg agtggaaata caaacgttcg atggagctgt caaagggaat gcagcagaag
     3601 atccagttcc tcacgtccgt gcttcacgat cccgacctgt tgattctcga cgaaccgttt
     3661 tccggtctcg atccaatcaa cgtcgagctg ttgaaagaca tcgtgctcga tctcaagcgc
     3721 gccggaaaga cgatcatctt ctcgacgcac cagatggaag ttgcggaaag gctctgcgac
     3781 gacatctgtc tgctcaatcg ttcgcagaaa gtcttcgaag gtagtttgcg cgagatcaag
     3841 agcagctttg ggcgcaacgc ggtggccgtg cgttgtgaag gcggcgacgg tgtgttggac
     3901 gatccggcgc tcgtcagcaa actcgtgcgc cacgctgacg aagcacaggc gctgctcgcg
     3961 cagggagccg acgcgcaggt tttgctgcga cggctgatcg actccggcgc tacgatcgga
     4021 aagtttgaaa tggtcgaacc gagcttgaac gacatcttca tcacgaaggt caccgaacac
     4081 gcatgacaaa gtttctcgcc atactcaaac gtgaatacat ccagcgcgtg cggtccaaga
     4141 tgtttatctt gtcgacgatt ctgttgcccg cggtgatgtc gctgttcggt atcgcgcccg
     4201 cggtgattct cagcattgac gcgggtggtc caaaccggct cgccgtggtg gaccagaccg
     4261 gcaagatgta cacgcgtctc gaagaagcac tggctagtga cgagcagcgc ccggatcagt
     4321 cagaacagat gcgcctgcgg ccggaaatgg agggcggcgc gtttaccctc gagcaggtcg
     4381 ttgcgattgg tcctgatgca ggcgagcaac gagctcaact ggatgcgcgt ttgcgaaaca
     4441 gggagatcga aggctacctg attcttccgc ccgacttcct gcggcacggc caggcggagt
     4501 ttttcaacaa caatccgggc gatctactga ggaatggcgt tttgcagcgc gcgttgaatc
     4561 gtgccgttcg agagcagcga ctgatcgagg cgaaagtcga tcccgagacg cgccagggat
     4621 tgtttcaacc ggtgagattg cagtcggtga aaaccggcgc ggcgggtgaa caacgtaatg
     4681 cgggcgacag ttttatcctc gtgttcggcg tcggcttcgt gatgtacctc gcgatactga
     4741 tgtacgggca gatcatcatg ggcgcggtga ttgaagagaa agaaacgcgc atcgcggaga
     4801 tactgttttc gtcggtgaag ccgttcacgt tgatgatggg caagctggtt ggtgtttcgc
     4861 tgttggcgtt gacgcagctt gcgatctggg ccacggcgtt tggcgcgttt gcgtggtatg
     4921 gagtgaactt gcttcagtcg cgaggagtaa aattcagtct tcccagcgtt cctctttcct
     4981 actacgttta ctttgcgctc ttctttctac tcggttactt catctacgcg acgatctatg
     5041 cgctggtcgg ttcgatggtg acgacgccgc aggaaggcgg gcagttggcg atgcccatca
     5101 tcctgatact cgtcgtcagc ttctacctgt ttctgccggt gagccgca
//
LOCUS       DASWTX010000029         3913 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_65517, whole genome shotgun sequence.
ACCESSION   DASWTX010000029 DASWTX010000000
VERSION     DASWTX010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3913
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65517"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1898
                     /locus_tag="VGD38_00435"
     CDS             <1..1898
                     /locus_tag="VGD38_00435"
                     /inference="COORDINATES: protein motif:HMM:NF037015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HEY0726503.1"
                     /translation="INITTNMRPWDGTGPAIQPWTIADGYIVAKNPKHPSVVYPPVYD
                     TAPLVVPILQPGEAVVIQVPWYPPNPADFGCFGDPGHMCLLGRIETSPTAPFGMTFPE
                     IVNVHTNVKNNNNIVWKNVTVVDNFPGAAKAASILVRNIFPQTVLTQLRLMKSKEGPT
                     FLDYGDIYVDLKPELFERWTEGRSAGEGFEVVGPTTIKVTNTQTTLANIRLEPGEAFP
                     VEVRFVLTTTRQAPVGVAPKWDLIQVGAPDNPNAIVGGQRFEADFQKIVLVKTGSQWR
                     YLDTGNSPGANWTAPDFDDSQWKLGRAELGFGDDPATNIRGAAQDSWRIATYFRHSFD
                     VVDPAFYRSLMLRLKRDDGAVVYLNGQEVSRMNMAGGTVTSSTPATKDVDGLEEEVFF
                     PVAVSPGLLRKGRNTIAVAIHQNTLGSPDLTFDLELFANSATQGFAPNVGFAPSTEGS
                     LWQTGQVITIQAEALDTDGQIKSVSFYADGILLGTDDTAPYTFQWQGASGGAHRIRAV
                     AIDNENRQSLTDTTVVVVENVPPVVLLTQPGDDSMFAVDANITFVANATDVTDGIKQV
                     EFFYREANFFMSPTNSIGIGTRSGSTHTVSLKLSTPGHYMVWAVATDDRGATSQSNPI
                     HIGIGAH"
     gene            2050..2700
                     /locus_tag="VGD38_00440"
     CDS             2050..2700
                     /locus_tag="VGD38_00440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726504.1"
                     /translation="MPNNTLLANVPVDLLYQALETEKGGVQIYSTALGLALNKDLREE
                     WNKYLEQTKNHVQVLSTIITDLGLDPDAETPGRKVVRYIGTSLVKAMELANRCADPQA
                     AQIVAAECVTLAETKDHLNWELLGELAKNANAEESALLMPAYQQVEGEEDEHLYHTTG
                     WTRELWLEALQMPAVLPPPEERQNADNAIAAAQAKKSRTVNAKATAPAKARKATAR"
     gene            2718..>3913
                     /locus_tag="VGD38_00445"
     CDS             2718..>3913
                     /locus_tag="VGD38_00445"
                     /EC_number="1.11.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF012425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004096 - catalase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HEY0726505.1"
                     /translation="MNKGKTNGKTVKSETNGPDSPMNGGYGEQNPKLDDLAKNLEESA
                     GEFLTTNQGVRVNDNQNSLKAGDRGPTLLEDFILREKITHFDHERIPERVVHARGSAA
                     HGYFQAYESMAQYTRAHFLQDPSVKTPVFVRFSTVAGSRGSTDLARDVRGFAVKFYTQ
                     EGNFDLVGNNIPVFFIQDAIKFPDLVHAVKPEPHNEIPQAASAHDTFWDFISLMPESM
                     HMIMWLMSDRAIPRSYRMMAGLGVPTFRLVNDKGKARFVKFHWKPLLGLHAVLWDEAQ
                     KISGKDPDFHRRDLWEAIENGDYPEWELCVQIVEEKDEFSFDFDLLDPTKIIPEEIVP
                     ARPIGRMTLNRNPDNFFAETEQVAFHIGNVVPGIDFTNDPLLQGRLFSYLDTQLIRLG
                     GPNFHE"
BASE COUNT          942 a         1101 c         1074 g          796 t
ORIGIN      
        1 acatcaacat cacgactaac atgagaccgt gggacggcac aggaccagcc atccaaccgt
       61 ggaccatcgc ggacggttat atcgtggcaa agaacccgaa gcacccgtcg gtcgtctacc
      121 cgccagtcta tgacaccgcg cccctcgtcg ttccgatctt gcagcccggc gaagccgtgg
      181 tcattcaggt gccgtggtat ccgcccaacc ctgccgactt cggctgcttc ggcgatcccg
      241 gacacatgtg tctgctcgga cgtatcgaga cgtctcccac cgcgccgttc ggcatgacgt
      301 tccccgaaat cgtgaacgtc cacacgaacg taaagaacaa caacaacatc gtctggaaga
      361 acgtcacggt ggttgacaat ttcccgggcg cggcaaaggc tgcctcaatt ctggttcgca
      421 acatctttcc gcaaacggtg ctcacacagc tacgcctgat gaaatcaaaa gaaggaccta
      481 cgttcctgga ctatggcgac atctatgtcg atctgaaacc ggaactgttt gagcgttgga
      541 ccgaaggcag gtcagccggt gaaggattcg aagtcgtggg accgaccacg atcaaggtca
      601 caaacacaca gacaacgctt gcgaacatcc ggctcgaacc gggagaagct tttcccgtag
      661 aagtgcggtt tgtgctgaca accactcggc aggcgccagt gggagtagca cccaagtggg
      721 acttgataca ggttggcgcg cctgacaatc ccaacgctat tgtcggtggg caacgcttcg
      781 aagcagactt ccagaagatc gttctcgtca aaacgggcag ccagtggcgg tacctggaca
      841 ccggcaacag ccccggcgcg aattggacag ctcctgactt cgatgattcg caatggaagc
      901 tgggccgtgc ggagctggga tttggcgacg accccgcgac aaacattcgc ggcgcggcgc
      961 aagattcgtg gcggattgcc acctatttcc gtcactcttt cgacgtggtc gatccggcgt
     1021 tttaccgaag cctgatgctg cggctgaaac gcgacgatgg cgcggtagtg tatttgaatg
     1081 gacaagaagt cagccggatg aacatggccg gaggcaccgt gacgtcgtca actcccgcaa
     1141 caaaggacgt ggacggactg gaggaggaag tcttcttccc ggttgccgtg agtcccggtc
     1201 tcctgcgcaa gggccgcaac acgatcgcgg tcgcgattca tcagaacacg cttggcagtc
     1261 ctgacctgac tttcgatctg gaactattcg cgaattcagc cacacagggt ttcgcgccca
     1321 acgtaggttt tgcgccgtct accgaaggct cgctctggca gactgggcag gtcattacga
     1381 ttcaagccga agcgttggac acagacggac agatcaagtc ggtctcgttc tacgcggatg
     1441 ggatactgct tgggacagat gacacagcgc cctatacctt ccaatggcag ggcgcgtcgg
     1501 gaggagcgca taggattcgg gcagtagcga tagacaacga aaaccggcag tcgctaacgg
     1561 atacgactgt cgtagtggtt gaaaacgtgc cgcccgttgt cctgctgact cagccaggtg
     1621 acgactcgat gttcgctgtc gatgcaaaca ttacattcgt cgccaacgca accgacgtca
     1681 ctgacggcat caagcaagtc gagtttttct atagagaggc aaatttcttc atgtctccca
     1741 ctaactcgat tggcatcgga acgcgttcgg gttcgactca tacggtctcg ctgaaactat
     1801 cgacgccggg gcattacatg gtgtgggcag tagcaacgga cgatcgcgga gcgacgagcc
     1861 aatccaatcc catacatatc gggataggcg cgcattaact ttcgattgca caacaaagag
     1921 acacggtgga cgccaatccg ctgtgtctct ttttttgcga aacgtcaggc atcgtacttg
     1981 ctctttcacg ccgcgactgc aaatcggtgt tgaaagtgat tcatttgagt gcgctctcaa
     2041 gggggataaa tgccaaacaa tacattgctc gcaaacgtgc ccgtcgatct cttgtaccag
     2101 gcgctggaga cagaaaaggg cggagtgcag atttactcga ctgccctcgg tctcgctctt
     2161 aataaggact tgcgcgagga gtggaacaag tatctggagc agacgaagaa ccacgtacaa
     2221 gttctttcaa ccatcatcac agacctcgga ctcgacccgg acgcggaaac gccgggccgc
     2281 aaagtcgttc gttatatcgg tacttcactc gtaaaagcga tggagctggc caaccggtgc
     2341 gccgatcctc aagccgctca aatcgtcgcg gcagagtgcg tcactctggc tgaaaccaaa
     2401 gatcatctca actgggaatt gctcggagag ttggcaaaga acgcaaacgc cgaagagtca
     2461 gcgctcctga tgcccgcgta ccagcaagtc gaaggcgagg aagatgagca tctttatcac
     2521 acgaccggtt ggacgcgtga actgtggctc gaagctttac aaatgcctgc cgtacttccg
     2581 ccgcccgagg aacgacagaa cgcggacaac gcaatcgccg ctgcccaggc caagaagtcc
     2641 aggaccgtca atgcaaaagc aactgcacct gcaaaagccc gaaaggctac cgcgcgttaa
     2701 ggaacaaggg gggaacgatg aacaagggga aaaccaacgg caaaactgtg aagagtgaaa
     2761 ctaacggtcc ggattcgcct atgaacggcg gctacggcga gcaaaatccc aagctcgacg
     2821 atctggcgaa aaatctcgaa gagtctgccg gcgagtttct cactaccaat caaggcgttc
     2881 gtgtaaacga taatcagaac tcgctcaaag ccggcgatcg tggtccaacg ctgttagagg
     2941 atttcatcct tcgcgaaaag atcacgcact tcgatcacga acgtattccc gaacgcgtcg
     3001 tgcatgcccg cggctcggcg gcgcacggct atttccaggc gtatgaatcg atggcccagt
     3061 acacgagggc gcatttcctt caagacccgt cggtcaagac tcctgttttc gttcgcttct
     3121 ctacagtcgc cggctctcgc ggctcaaccg atcttgcacg cgatgtgcgc ggcttcgcgg
     3181 taaagtttta cacgcaggaa ggaaacttcg atctcgtcgg caataacatt cccgtcttct
     3241 tcattcagga cgcgatcaag tttcccgatc tggtccacgc ggtaaagccc gaaccacaca
     3301 acgaaattcc gcaggctgca tcggctcacg acaccttctg ggacttcatt tcgctgatgc
     3361 ctgaatcgat gcacatgatc atgtggctca tgtcggatcg cgcgatcccc agaagctatc
     3421 gaatgatggc aggtttgggc gttcctactt tccggctcgt caacgacaag ggaaaggcgc
     3481 gcttcgtgaa gtttcactgg aagcccttgc tcggtttgca cgcggttctc tgggatgaag
     3541 cgcaaaagat ctcgggtaag gatcccgact ttcaccggcg cgatctgtgg gaagcgatcg
     3601 agaatggtga ttatcccgag tgggaactct gcgttcagat cgtcgaggag aaagacgagt
     3661 ttagttttga tttcgacttg ctcgatccga cgaagatcat tccggaagag atcgtccccg
     3721 cacgccccat cggcaggatg actctgaacc gcaatcccga caacttcttt gccgaaactg
     3781 agcaggtggc ttttcacatt ggcaacgtcg tgccgggaat tgattttacg aacgacccgc
     3841 tgctgcaagg ccggctcttc tcatatctcg acacacagtt gattcgcctg ggcggaccaa
     3901 actttcatga aat
//
LOCUS       DASWTX010000030         5682 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_238578, whole genome shotgun sequence.
ACCESSION   DASWTX010000030 DASWTX010000000
VERSION     DASWTX010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5682)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5682
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_238578"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2844
                     /locus_tag="VGD38_00450"
     CDS             <1..2844
                     /locus_tag="VGD38_00450"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY0726506.1"
                     /translation="FDWFDYWLNIHLPGLTKWVFPTLEDEMRAQPKRVYTYRDLLELF
                     ETSTKRHATRVAMRIERDGRKEQYTYADLRELATRVAGFLAAHGIKPGDRVMLVSSNA
                     PEWGMTYFGVLKAGATCIPCDPESSTNEILNFARAGNAAGIIASEAVLDERPDLRERL
                     QQEGTARLWTYTEVFEMPDEQTEDERIALLPQRVTAQSVASLIFTSGTTGQPKGVMLS
                     HRNLTSMVSMLSSVFDMSTSDGVLSVLPLHHTFEFSTGFLTPLSRGAQITYLPELTSD
                     ALAKAIKNGHVTGMVGVPALWELLHRRIKNRLYERSDWIGKTAENLIWANAKLRDKTS
                     VNLGQVLFYPIHEGLGGRIRYFISGGSALSEKIQRDFHGLGFTILEGYGLTEASPVLT
                     VTRPENRMLTGTVGKPLPGVEVRIADPDASGVGEVLARGPNVMLGYYENEAATRATLV
                     DRWLHTGDLGRVDEDGNRYLVGRSNEIIVDTNGKNVYPDELEEVYENSPYVKELSIVG
                     LPDGIGEKVACLVVPDDEYDISLSRAELHRLVEEHFREVSASLPYFKRVKVLHFTDIE
                     LPRTATRKVKRREVVQIMETLEEKQRSGRQSLAQESADADSVWLAGIVATVANRPRSE
                     VSIDTRLSDLGFDSLMFVELATAIENAGGSITAPERFNEIQDLRELLTVVNRRPGASA
                     KREIRPEERKKDDEIHIPSFVKTAGTKAGDYLQQFLYERFLRTNYEGRSNIPPHTNFI
                     VAANHCSHLDMGLTKMALGEYGTDMVALAAADYFFDTKYKRAVMENFTNLVPMERTGS
                     LRQSLRHAKSFLDRGYNALIFPEGTRSMTGVLADFKPVVGYLALHARVGILPMYLDGT
                     YEAMPKGTTIIKNRDVGARIGHFLSYEELEEMTRGLARAEAYRLIAARVRHEVVNLRD
                     RARTPFDWKALRKQWRSERKVHLIEEAEETVAV"
     gene            2844..3941
                     /locus_tag="VGD38_00455"
     CDS             2844..3941
                     /locus_tag="VGD38_00455"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY0726507.1"
                     /translation="MPTKSPGKRTARMTTVPSATKRRAAIEKRQRATTLITGGTGFLG
                     AHLVHQLIEEGARDIRVMATSIPDWLVNLGVETFEGSIMNADDNKRAVEGISEIYHLA
                     GKVSREQKDSRSMYDIHVEGTRLLCDAAKAAGTRTIVLASTSGTIAVTKEGDVIPDET
                     YPQPLEIISRWPYYASKSYQEMAALERFSGKGLRLVIMNPSLLLGPGDDRLSSTKVVL
                     DFMARKIGAVPTGGVSFVDARDAAKTFRMAMKKGRHGERYLLGAANWTFAKFFGRLER
                     LTKVSAPWIALPSRFAIRGSQLLDSLFKQWDMTSPVEPGAIEMAQYFWYLNCSKAARE
                     LSFKPRDPGETLHDTVTYLRENFLGGNAFAK"
     gene            4138..>5682
                     /locus_tag="VGD38_00460"
     CDS             4138..>5682
                     /locus_tag="VGD38_00460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="PPC domain-containing protein"
                     /protein_id="HEY0726508.1"
                     /translation="MSVSEGPTLKLGTPVERKLGPTEAHTYGITLEENMYIQLVVEQR
                     GIDLVAHVISPEGSKLGDFDSPNGTDGPEHVSFVAAAPGVYRVVLAPLNPQDTKSGMY
                     EIKIVELRQATEQEIKTSKNLEVVKTKGVALLNDVDGIMPEIRSPLTRIRAQLQAAQL
                     LWPVDEKRASKYLTDAANGVKEFLTVEPTSNEYIRNYAHMMQLRSEIVGVLTQRDPEG
                     ALEFLRSSRMPLDPYGNEREYANQETALELNIAAQISGNDPKRALQIARQSLKNGYSS
                     NLTHTIFQLKNKSPELAAELANEVVAKLLGDALLKSGYGAFLAGNLARGCRTSPGDVP
                     TSGPDGSAALQLLSPETCRELLQKSYREALSYTPQPPHQYSQEREAARQLLYALRNVG
                     PELDTLITGGSATVTKRISEIDSTGETPAAYVQVQQKMNEGGPMDGALELIEKVPAEM
                     KDSLYSQYASNTAVRGDAARARQIINEKISNPFQRRQALVNVDIQEVYLLMQRGKVED
                     ALRTINA"
BASE COUNT         1277 a         1668 c         1676 g         1061 t
ORIGIN      
        1 ttcgactggt tcgactactg gctcaacatt cacctgccgg gactcacgaa atgggtgttc
       61 ccgacgctcg aagacgagat gcgcgcgcag ccgaagcgcg tctacacgta tcgcgacttg
      121 ctcgagttgt ttgaaacttc aaccaagcgt cacgccacgc gcgtcgcgat gcgtatcgaa
      181 cgcgacggac gcaaagagca gtacacctac gcagatctgc gcgagctggc gacgcgcgtc
      241 gctggtttcc tcgcagccca cgggatcaaa ccgggcgatc gcgtgatgct ggtcagcagc
      301 aacgcgcccg agtggggcat gacttacttc ggcgtgctga aggcgggtgc gacttgcatc
      361 ccgtgcgatc cggaaagctc gacaaacgag attctcaact tcgcgcgcgc gggaaacgcc
      421 gcgggcatca tcgccagcga agccgtgctc gatgagcgtc ccgatctgcg tgagcgttta
      481 caacaggaag gcacggcgcg tctctggacc tacaccgaag tctttgaaat gccggacgag
      541 cagactgaag acgagcgcat cgcactgctg ccacaacgtg tcacggcgca aagtgtcgcg
      601 tctttaatct ttacatcggg aacgacaggc caaccgaaag gcgtgatgct gtcgcatcgc
      661 aacctgacga gcatggtttc gatgttgtcg tcagtgttcg acatgtcgac gagcgacggc
      721 gtgttgtctg tgttgccgct gcatcacacg ttcgagttct ccaccggttt tctgacaccg
      781 ctcagccgcg gcgcacaaat aacttacttg ccggaattaa caagcgacgc gctcgcgaag
      841 gcgatcaaga acggtcacgt cacgggcatg gtcggcgtgc cggcgctgtg ggaactgctg
      901 caccgccgca tcaagaaccg tctctacgaa cggagcgact ggattggcaa gaccgcagag
      961 aatttaatat gggccaacgc gaagctgcgc gacaagacct cggtcaacct gggccaggtg
     1021 ctcttctatc cgattcacga aggactcggc ggccgcattc gctacttcat cagcggcggc
     1081 tcggcgttga gtgaaaagat tcagcgcgac ttccacggtc tcggattcac gattctcgaa
     1141 ggctatggtc tcactgaagc atctccggtg ttgactgtca cacgtcccga aaaccggatg
     1201 cttaccggca cggtcggcaa gccgctgcct ggtgttgaag tacgcattgc cgatccggat
     1261 gcgagcggtg tcggcgaagt gcttgctcgt ggtccaaacg tgatgctcgg ttactacgag
     1321 aacgaagccg ccacacgcgc gacgctcgtc gatcgctggc tgcacacggg tgatctcgga
     1381 cgcgtcgacg aagacggcaa ccggtatctc gtcggccgct cgaacgagat catcgtcgat
     1441 acgaacggca agaacgtcta tcccgacgag ctcgaagaag tctacgagaa ctcgccgtac
     1501 gttaaagagc tgagcatcgt cggtcttccg gatggaatcg gcgagaaggt cgcgtgtctc
     1561 gtcgtgcctg acgacgagta cgacatttca ctctcgcgcg ccgagctgca tcgtctcgtc
     1621 gaggagcact tccgcgaagt gtcagcttcc ctgccctact tcaaacgcgt gaaggtcctg
     1681 cacttcaccg acatcgaact gccgcgcacc gcgacgcgca aagtgaaacg tcgcgaagtc
     1741 gtgcagatca tggagacgct cgaagagaaa cagcggtcgg gccggcagtc gctggcgcag
     1801 gaaagcgccg atgctgattc ggtgtggctg gcgggcatcg tcgcgacagt cgcgaatcgc
     1861 ccgcgttcgg aagtctccat cgacacgcgt ctgagcgatc tcggtttcga cagcttgatg
     1921 tttgtcgaac tcgcgaccgc aatcgagaac gccggcggtt cgatcactgc gcccgaacgg
     1981 ttcaacgaga ttcaggacct gcgcgaattg ctgaccgttg taaaccgccg tcccggcgct
     2041 tcagccaaac gcgagatccg gcccgaagag cgcaagaaag acgacgagat tcacattccg
     2101 tcgttcgtca aaacagccgg aacaaaagcg ggcgactacc tgcaacagtt cctctacgaa
     2161 cggttcttgc gcacgaatta cgaaggacgt tcaaacattc cgccgcacac caacttcatc
     2221 gtggctgcga atcactgttc gcacctcgac atgggcctga cgaagatggc gctcggtgag
     2281 tatggcaccg acatggtcgc gctcgcggct gcggattact tcttcgatac gaagtacaaa
     2341 cgcgcggtga tggaaaactt cacgaacctc gtgccgatgg aacgcaccgg ttcattgcga
     2401 caatcgctga gacatgcgaa gtcgtttctc gatcgcggtt acaacgcgct catcttcccc
     2461 gaaggcacgc gctcgatgac gggcgtgctg gctgacttca aacccgtcgt cggttacctg
     2521 gcgctgcacg cgcgcgtcgg catcctgccg atgtatctgg acggtacgta cgaagcgatg
     2581 ccgaaaggca cgacgatcat caagaatcgt gacgtcggcg cacgcatcgg acacttcctc
     2641 tcgtacgaag agctcgaaga gatgacgcgc ggtttggcgc gggctgaagc gtaccggttg
     2701 atcgccgcgc gcgtcagaca cgaggtggtg aacctgcgcg atcgcgcgcg cacgccgttc
     2761 gattggaaag cattgcgcaa acagtggcgc agcgagcgca aggtgcactt gatcgaagaa
     2821 gctgaggaga ccgtcgcggt ctaatgccaa ctaaatctcc aggcaaacgc accgctcgca
     2881 tgacgaccgt tccgtccgcc acgaaacgcc gcgccgcgat cgaaaagcgc caacgggcca
     2941 cgacgctcat caccggcggc accggcttcc tcggcgcaca tctcgttcac cagctcatcg
     3001 aagaaggcgc acgagacatt cgcgtgatgg cgacgtccat tccggattgg ctcgtcaacc
     3061 tcggcgtcga gactttcgaa ggctcgatta tgaacgccga tgacaacaag cgcgcggttg
     3121 aaggcatcag cgagatctat cacctcgcgg gcaaagtctc gcgcgagcaa aaagactcgc
     3181 gctcgatgta cgacattcac gtcgaaggca cgcggctgct ctgcgacgcg gcgaaagctg
     3241 ccggaacgag aacgatcgtg ctcgcttcga cgagcggcac gattgcggtc actaaagaag
     3301 gcgacgtcat tcccgacgag acttatccgc agccgctcga gatcatttcg cgctggccgt
     3361 attacgcgag caagtcgtac caggagatgg cggcgctcga acgtttcagc ggtaagggat
     3421 tgcggctcgt gatcatgaat ccgagtctgc tgcttggtcc gggtgacgat cgtttgagtt
     3481 cgacgaaagt cgtgctcgat ttcatggcgc gcaagattgg cgcggtgccg accggcggcg
     3541 tgagttttgt cgatgcgcgc gatgcggcga agacgtttcg catggcgatg aagaagggcc
     3601 ggcacggcga gcgttatttg ctcggcgccg cgaattggac ctttgcgaag tttttcgggc
     3661 gtttggagcg gctgacgaaa gtttcggcgc cgtggatcgc gttgccttcc cgatttgcca
     3721 ttcgcggatc gcagttactc gattcgttgt tcaaacagtg ggacatgacc tcgccggtcg
     3781 agccgggcgc gatcgaaatg gcgcaatact tctggtatct caactgctct aaagccgccc
     3841 gcgaattgag cttcaagccg cgcgaccccg gcgaaaccct tcacgacacc gtcacctacc
     3901 tgcgcgaaaa tttcctcggc ggtaacgcct tcgcaaaata atccgtgtag tctcgggcag
     3961 gtttgggaac ccttttggcg gtcgcagcgt cttaactccg tatccgctct caataatcca
     4021 caactggaga tgcacatgcg tcaaccgggt caactaaggg cacttcttgc cgcgtccttt
     4081 ttcctctgct tgctgacaaa cacggccctc gcacagcgcc aaaatcaggg acgaacgatg
     4141 agcgtctccg aaggcccaac tctcaagctc ggcacgccgg tcgaacgtaa actcggtccg
     4201 accgaagctc acacctacgg catcacgctt gaagagaaca tgtacatcca gctcgtggtc
     4261 gagcagcgcg gtatcgacct cgtcgcgcat gtcatatcgc cggaaggcag caaactcgga
     4321 gacttcgatt caccaaacgg cactgacgga ccggagcacg tttcctttgt cgccgcagca
     4381 cccggcgttt atcgcgttgt tctggcgccg ctgaacccgc aggacacaaa gagcggcatg
     4441 tatgagatca agattgtcga actgcggcag gcgaccgagc aggagatcaa gacgagtaaa
     4501 aacctggaag tcgttaagac caagggcgtc gccttgctca acgacgtcga cggaataatg
     4561 ccggagatcc gttcgccgct aacacgcatc cgcgcgcaac tgcaagcagc gcagttgttg
     4621 tggcccgtcg acgagaaacg cgcttcgaag tatctgaccg acgcagcgaa cggtgtgaag
     4681 gaatttctga ccgtcgagcc cacgagtaac gagtacatca ggaactacgc acacatgatg
     4741 caactgcgat ccgagatcgt tggcgtgctc acgcagcgcg atcccgaagg cgcactagaa
     4801 tttctgcgct cgagcaggat gccgctcgat ccttacggca atgaacggga gtacgcaaac
     4861 caggagaccg ccctcgaact caacatcgcg gctcagattt ccggcaacga tccaaaacga
     4921 gcgcttcaga tcgcgcgaca aagtctaaag aacggctact cttcgaatct tactcacacg
     4981 atcttccagt tgaagaacaa gagccccgaa ctcgctgccg agctggcaaa cgaagtggta
     5041 gcgaagcttc tgggtgacgc tttactcaag tcgggctacg gcgcgttttt ggcgggcaac
     5101 ctcgcacgcg gttgccgaac ttcgcccgga gacgttccaa cctcaggacc agatggatct
     5161 gcggcgttac agctgttgtc gccggaaaca tgccgcgagc tgttgcaaaa gtcctatcgg
     5221 gaagcactct cttacacgcc gcagccaccg catcagtact cgcaggaacg agaggcggca
     5281 cgacaactcc tgtacgcact gcgaaacgtt ggaccagagc tggacacgct gataaccggt
     5341 ggctcggcta cggtcacgaa gaggatcagt gagatcgaca gcacgggaga gactccagcg
     5401 gcgtatgtac aagtgcagca gaagatgaat gagggtggtc caatggacgg cgcgctcgag
     5461 ttgatcgaga aggtgccggc ggaaatgaaa gactcgcttt acagtcagta cgccagcaac
     5521 accgcggtga gaggcgacgc agcgcgcgcg cggcagatca tcaacgagaa gatttcgaat
     5581 ccttttcagc ggcggcaggc gttggtgaat gttgacatac aagaggtcta cctgcttatg
     5641 cagcgcggca aggttgaaga tgcgctgcgg acgatcaacg ca
//
LOCUS       DASWTX010000031         2833 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_65520, whole genome shotgun sequence.
ACCESSION   DASWTX010000031 DASWTX010000000
VERSION     DASWTX010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2833)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2833
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65520"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..299)
                     /locus_tag="VGD38_00465"
     CDS             complement(<1..299)
                     /locus_tag="VGD38_00465"
                     /inference="COORDINATES: protein motif:HMM:NF012305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEY0726509.1"
                     /translation="MGKKLYVGNLSFQTTSQDLQDFFATAGTVDSASVITDRDTGQSK
                     GFAFVEMSTDDEAAAAIEQFNGKELDGRMLRVNEARPRESRPGGGGGGRGFGGGGG"
     gene            544..1233
                     /locus_tag="VGD38_00470"
     CDS             544..1233
                     /locus_tag="VGD38_00470"
                     /inference="COORDINATES: protein motif:HMM:TIGR02943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0726510.1"
                     /translation="MAEKIIIRYLLSRQSMHYSTGPINFDDMSEAQVKSPYPAPDPAR
                     WLDDHGDYLFKYAVFRLRDDNVAEDAVQETFLAALKAYENFEGRGSERTWLVGILKHK
                     IIDHFRRVGREAPIGEDVDAGPEHNEFFERPDTWQGHWNVDRAPNDWHATPAELMERT
                     DFWKVFNDCLTPLPKRTVSAFTLREVDGLNSEEICEILSIKVNNLWVMLHRARLHLRN
                     CLEVNWFKREQ"
     gene            1235..1543
                     /locus_tag="VGD38_00475"
     CDS             1235..1543
                     /locus_tag="VGD38_00475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726511.1"
                     /translation="MALKLYEKLKHTVRFWLLRNLPTCQQTVQTISESMERQLSPVER
                     LTTKLHVWICVWCQWYLEHLQLIRTASRTQAEKAPEVMSDATLSNEARERIRRRLNQT
                     "
     gene            1612..>2833
                     /locus_tag="VGD38_00480"
     CDS             1612..>2833
                     /locus_tag="VGD38_00480"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY0726512.1"
                     /translation="MDSVDHDHQHVPNRFGVIPTAVRLNADPAYTGKDVTVAFLDSGF
                     YPHPDLVTPLNRIVAYHDVAGELRDLSSNQQVESWQWHGTQTSVAATGNGHLSDGVYR
                     GLAHESKLVLVKVSQRGRITEENISRGIHWVIANRERYNIRVLNISLGGDEDVACSKS
                     IIDQAAEEAIRNGIVVVAAAGNSGDAGLHSIPPANSPNVITVGGYSDNNQLDGKDLAL
                     YHSNFGVTADGTVKPEIVAPAMWIAAPILPGTALYRRAQALSRLRVTAEVEAVLAQEK
                     IVATHYQHVDGTSFAAPIVTSIVAQMIESNPALTPGAVKNILISTANRILTESAIRQG
                     YGVVNARRAVELAKTEQHALNVVGCSPPRAEYGRLMFVFHDDAAESVSVAGDFNAWHP
                     LATPLARNDSGLWIG"
BASE COUNT          677 a          796 c          762 g          598 t
ORIGIN      
        1 ccaccgccgc cgccaaagcc tcggccacca ccaccgccac cgggacgact ctcgcgaggc
       61 cgtgcttcat taactcgtaa cattcggccg tcgagttcct tgccgttgaa ttgctcaatt
      121 gccgccgccg cttcgtcgtc agtagacatt tccacgaacg caaaaccctt ggattgtccg
      181 gtgtcgcgat cggtaatcac gctcgccgaa tcaactgttc cagccgttgc gaagaagtct
      241 tgcagatcct gactcgtggt ttggaaagag aggtttccaa cataaagttt ttttcccata
      301 gaaatccttt cctctatcga ggatgaaaag aagcggcgaa tcggatctag cttcggcgaa
      361 cggtagcggc gaaggatctg gttctaatgc tcatttagag cggcttcgat gtgtgaaacc
      421 agcctctctc aacgatccaa acgtccgccg ttcaacttat gcgcgggcgc atcaccgtag
      481 atgcgcgaga gaaggattga cagcttaaga tgttaccgca acaaataaga ccacagcaac
      541 cgtgtggccg aaaagattat cattcgctat ttgctgtccc gccagagcat gcactactct
      601 actggcccaa taaacttcga cgatatgagc gaggcacagg ttaagtcccc ctacccggcg
      661 ccagatcccg cccgttggct ggacgatcac ggcgattacc ttttcaaata cgcggttttc
      721 cggctgcgag acgataacgt ggccgaagac gcagtacagg agacttttct cgccgctttg
      781 aaagcgtatg aaaacttcga ggggcgaggc tcggagcgaa cctggctagt cgggatcctg
      841 aagcacaaga tcatcgatca ctttcgacgc gtcggtcgcg aagctccgat tggtgaagac
      901 gtcgatgccg gaccagaaca caacgagttt tttgaaagac ctgatacctg gcagggccac
      961 tggaacgtcg accgcgcgcc aaacgattgg cacgccacac ccgccgaact gatggagcgg
     1021 accgatttct ggaaggtctt caacgactgc ctcacgccgt tgccaaaacg cacggtcagc
     1081 gcttttacgc tgcgtgaggt ggacggtctg aacagcgaag aaatctgcga gattttgagc
     1141 ataaaagtaa acaacttatg ggtcatgctg caccgtgccc ggctgcactt gcgcaactgt
     1201 ctggaagtaa attggttcaa acgagaacag tgaaatggcg ttgaaacttt acgagaaact
     1261 aaaacacact gttcgcttct ggctgttacg caatttgccg acgtgccagc agactgtcca
     1321 gacaatctca gagtcgatgg aacgccagtt atcacccgtc gaacgcctca ccacgaagct
     1381 tcacgtttgg atctgcgtgt ggtgccagtg gtacctggag catttacaac tcattcgcac
     1441 cgcttcgcgc actcaagctg aaaaagcgcc cgaggtcatg agcgacgcga ctctttcaaa
     1501 cgaagcgcgc gaacgaatcc gccgccgcct caaccaaacc tagccacaga aaacaacttg
     1561 taagggtttg acccctccca gcgacaaatg ttgcagggag aggtatgcgg catggattct
     1621 gtagatcacg atcatcaaca cgttccgaac cggttcggcg tgattccgac ggcggtgcgg
     1681 ctaaatgcgg atccggcgta caccggcaaa gacgttacgg tggcttttct tgattcgggg
     1741 ttctacccgc atccagacct cgtcacaccc ttgaaccgga tcgttgctta tcacgatgtc
     1801 gccggagaac tgcgcgactt gtcgtctaat caacaggtcg aatcgtggca atggcacggg
     1861 acacaaacat cagtcgcggc aacgggtaat ggacatctca gtgatggcgt ttatcgtggc
     1921 ctcgcgcacg aatcaaaact cgttctcgta aaagttagtc aacgcggccg cataacggaa
     1981 gaaaacatct cgcgaggcat tcattgggtg attgccaatc gcgagcgcta caacatccgc
     2041 gtgctgaaca tctctttggg cggcgatgag gatgtcgcgt gttctaaaag catcatcgat
     2101 caggccgccg aggaagcgat ccgaaacgga atcgtggttg ttgccgcggc gggaaactcc
     2161 ggagacgcgg gtcttcattc aattccaccg gcgaactcgc cgaatgtgat tacagttggt
     2221 ggttactccg acaacaacca gttggacgga aaagatctcg ccttgtatca ctcaaacttt
     2281 ggcgtgaccg ccgatggcac ggtcaaaccg gagatcgtcg cacctgcgat gtggattgcg
     2341 gcgccaatat tacctggaac agccctttat cgacgcgctc aagcgctttc acgccttcgt
     2401 gtcaccgccg aagtcgaagc ggtcctggca caggaaaaga tcgtcgcgac gcattaccag
     2461 cacgttgacg gtacttcgtt cgccgcgcca atcgtgacgt cgatcgtggc gcaaatgatc
     2521 gagtcgaatc cggcgctgac acccggcgct gtcaaaaaca ttttaatttc gactgcgaac
     2581 cgcatcttga cggagtccgc tattcgccag ggctatggtg tggtgaacgc aagacgagcg
     2641 gtcgaactgg caaaaactga acagcacgcg ctgaacgttg tgggatgcag cccgcctcgc
     2701 gcggagtacg gccggttgat gttcgtgttt catgacgacg cggccgagag tgtttccgtt
     2761 gccggtgact tcaacgcttg gcacccactc gcaacaccac tcgcgcgcaa cgactccggt
     2821 ctttggatcg ggg
//
LOCUS       DASWTX010000032         5582 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_86961, whole genome shotgun sequence.
ACCESSION   DASWTX010000032 DASWTX010000000
VERSION     DASWTX010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5582
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86961"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2211
                     /locus_tag="VGD38_00485"
     CDS             <1..2211
                     /locus_tag="VGD38_00485"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0726513.1"
                     /translation="DMTLNAGGHAEVVSGQVVSGNYYSALGVTALVGRTITDADDRAG
                     VTPVAVLSHRLWTTRFNSDPTIVGKQVNINNVAFTVAGVTPAGFAGTSDVGSTQDVTI
                     PVAWEPQISGEQTNTRGAGIWWLRLMGRLKPGATIEQAQAALAEPFQASVLEHRAARQ
                     SRAAQPLRTLEPKDLPRLGVDSGSRGEMDARRGLATPLQLLLGVVGVVLLIACANVAN
                     LLLVRASARQKEIAVRVALGASRARLVRQLLTESLLLAIAGGAVGMLFALWIKNGLLV
                     VTEWGGPAMVSLEPALDLRVFGFTLGLSVLTGLVFGIVPALRATRFDLTPTLKDAARG
                     SSAISRSLLSRSLVVAQVSLSVLLLIGAGLLVRTLRNLQHVETGFNAHNLLLFSIDPS
                     LIGYKDDRLAELYERMCARLESVPGVQAVTFSRNALLSYSANTSSVYVEGELGPDGKP
                     RDSDTKIHTVRENFLPAMEIPLLHGRNLSAQDDARAARVAVVNQAFVTTHFPYTNPIG
                     KRFGYEPDKPAEIEIVGVARDAKYTSQRDAIEPTVYQPWKQSLNRMQVATIKVRTNGD
                     PSSFVAGVREAMHEVDSNLPLTNVRTQLEQADKTLSMERMLAKLFTLFGLIAQTLAAV
                     GLYGVMAYTVAQRTQEIGIRMALGANRGNVLTKILRQGMALTLVGVGLGLAAAYVLMK
                     YMESLTDLLFGVEPRDPWTFGAIGVLLIVVALIACLVPARRATKVDPLVALRYE"
     gene            2474..4867
                     /locus_tag="VGD38_00490"
     CDS             2474..4867
                     /locus_tag="VGD38_00490"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0726514.1"
                     /translation="MLNDLRYALRMIIKHRVFTCVAVLALGLGIGANTAIFSVINAVV
                     LRPLPYRNPEQLVTVLHDGAKPVAPANYFDLAAQNTSFAAIAAAQWWEPNLTGREQPE
                     HLRGLQLTAQMFQVLDVEPVLGRTFTAEEDQPGRERVVVLSHRLWQRRFGGDAGVVGQ
                     QVTFDGQSYTIIGVMPAEFQFAPFWATNAELWAPLNLSARANDRGGQSLRVFARLKPD
                     VTRAMAQADVATIFRRLEQEHPQANKGLALAVEPLHEQVVGKTRPALLILFGAVSFVL
                     LIACANVANLMMARATSRQKEIALRTALGASSTRIARQLLTESVLIALIGGAFGLLLS
                     IAGMKALLALGPESLPRLQTIKLDLPTLGVTFGLSVITGLLFGLAPVLQTRKWNWYES
                     LKDSTRGSSAGRSRVNARRLLVISEVALALMLLVGGGLMVRSFARLRAVDPGFTPDRL
                     LTMNVSLAGSAHSTPPKRVAFFNELLQRVDSLPGVQSASAINHLPLAGDVWTVPFFIE
                     GRPVPAPGEKQGAVYRIIRPDYFRTMGATLLKGRDFNVHDNDTSPRVAIVNEPFARRH
                     WPNEDPLGKRIRVSDETDLREIVGVVKPLKQDQWTAEPNLEMYLPHLQAASPRGLTLV
                     IRSSGDPLALVGSIENQVWSIDKNLPVSEIRTMHEVIAGSIEQHRFNLFLLGLFAFVA
                     LVLALVGIYGVMSESVTARTHEIGIRMALGARAADVLRMVVGQGMTLAAIGIAIGLFG
                     AFWLTRFMTTLLYEVSPTDSATFLLIPLVVALVVLCACLIPARRATKVDPLIALRDE"
     gene            4878..>5582
                     /locus_tag="VGD38_00495"
     CDS             4878..>5582
                     /locus_tag="VGD38_00495"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0726515.1"
                     /translation="MMKDVRYGIRSLLKRPGLTAVALITLALGIGVNTAIFSAVDSVL
                     LRPLPFKEPERVMAVWEHTPHLGIARNEFAPANYFDLRRQNQSFEEVGAFGQLNINLT
                     GEGEPEQLDGQLVTANVFSLLGVPAALGRTFASDEDQLGREHVAVLSDALWQRRFNRD
                     PGIINRQVTLNGESFTVVGVMPRNFFFPEREAELWVPWAMEPGQAEGRGDHYFRLVAR
                     LKPGVTREQANAEAESI"
BASE COUNT         1018 a         1565 c         1804 g         1195 t
ORIGIN      
        1 gatatgacgt tgaatgccgg aggtcatgca gaggtcgtca gtggacaggt agtgtccggt
       61 aattactact cggcgcttgg cgtgacggcg ctggtgggcc gcacgatcac agatgctgac
      121 gatcgtgccg gcgtgacgcc cgtggccgtg ctcagtcatc gtttatggac cacccgcttc
      181 aacagtgatc ccaccattgt cgggaaacag gtaaacatca acaacgtcgc tttcaccgtc
      241 gcaggcgtga cgcccgcggg ctttgccggc acttcagacg tcggttcgac gcaggacgtg
      301 acgatcccgg tggcgtggga gccgcagatt tcgggtgagc aaaccaacac gcgtggcgcg
      361 ggtatctggt ggctgcggct gatgggccgg ctaaaaccag gcgcgacgat cgaacaggcg
      421 caggcagcgc tggctgaacc gttccaggca tctgtacttg agcatcgtgc cgcgagacag
      481 tcccgcgcgg cgcaaccact gcgaacgctc gagccgaaag atctgccgcg gctcggagtc
      541 gactcgggaa gccgcggcga gatggatgcg cggcgaggtc tggcaacgcc gttgcagtta
      601 ctactcggcg tggttggtgt ggtgctgctg atcgcgtgcg ccaacgtcgc gaacctgctg
      661 ctcgtcagag cttctgcacg tcaaaaggag attgcagttc gcgtcgcgct cggagcgagc
      721 cgtgcgcgtc tggtccggca actgttgacc gagagcctgc tgctcgcgat tgccgggggc
      781 gccgtgggaa tgctctttgc gctctggatc aagaacggtt tgctggtggt gaccgagtgg
      841 ggtggaccag cgatggtttc actcgagcca gcgctggacc tgcgtgtctt tggtttcact
      901 ctgggattgt ccgtcctgac gggactcgtg ttcggtatcg ttccggcact gcgcgccacg
      961 cgtttcgacc tcacgccgac actcaaagac gcggcgcgcg gatcgtccgc tatcagtcgt
     1021 tcgctgctca gccgatcgct ggtcgtggcc caggtctcgc tctctgtttt gcttctgatc
     1081 ggtgcgggct tgctagttcg cacactacga aatctccagc acgtcgaaac gggattcaat
     1141 gcgcacaacc tgctgctctt cagcattgat ccgagtttga tcggctacaa agacgatcgc
     1201 ctggctgagt tatacgagcg gatgtgcgcg agactcgaat cggtgccggg cgtgcaggcg
     1261 gtcacgtttt ctcgcaacgc gctgctttct tactcagcca acaccagctc cgtttacgtt
     1321 gaaggcgagc ttggaccaga cggcaagccc cgcgacagcg atacgaagat tcatacggtg
     1381 cgtgagaatt tcctgccggc aatggaaatc ccgttgctgc acggacgcaa tctgtccgcg
     1441 caggacgacg ctcgtgctgc gcgagtcgca gtcgtcaacc aggcgtttgt gacaacgcac
     1501 tttccgtata caaatccgat tggcaaacgc tttggctacg agcccgacaa acccgcggag
     1561 atcgagatcg tcggcgtggc tcgcgacgcg aaatacacga gccagcgaga cgcgatcgaa
     1621 ccgactgttt atcagccgtg gaaacagtcg ctgaaccgga tgcaggtcgc gacgatcaag
     1681 gtgcgcacta acggcgatcc ctcatcgttt gtggcaggcg tgcgcgaagc gatgcacgaa
     1741 gtagacagca acttaccgct caccaacgtt cgcacgcaac tcgaacaagc cgacaagacg
     1801 ctgtcgatgg agcgcatgct ggcgaaactg ttcacgctct tcggattgat cgcgcagacg
     1861 ctcgccgcgg tcgggctcta cggtgtgatg gcctacacgg tcgcgcaacg cacgcaggag
     1921 atcggcattc gcatggcgct cggcgctaat cgcggcaacg tgttgacgaa gatcctgcgg
     1981 cagggaatgg cgttgacgct ggttggcgtc gggctcggtc tcgctgcggc ttacgtgttg
     2041 atgaagtaca tggagagtct gactgacttg ctgttcggag ttgaaccgag agatccgtgg
     2101 acctttggcg cgatcggcgt gctgctgatc gtcgtggcgt tgatcgcgtg tttggtgccc
     2161 gcgcgccgcg cgacgaaagt cgatccgctg gtagcactga ggtacgagta atggaactta
     2221 ggggaggtgc agaaaagtcc tttagcggct tcgccgccgg ttgtgaggcg aggctacgcc
     2281 tcgccgtggg ttgggggact aaaacaatgg ggctgagccc ctggttcggg ctcagccctt
     2341 tgggccatag gccgtaccag gggcgtagcc caactgctaa ttttcctcct tccggcgggg
     2401 cggagccccg cctcacatcc ggcggcagag ccgtttaaat cagtttttgt gtaacgcgag
     2461 ttaaggggga tttgtgctga acgatttacg gtacgcattg cgaatgatca tcaagcaccg
     2521 cgtctttacg tgtgtcgcgg tgctggcgct tgggttgggc attggcgcga acacggcgat
     2581 cttctcggtt atcaacgcgg tcgtgctgcg gccgcttcct tatcgcaatc cggaacaact
     2641 cgtgacggtg ctgcacgacg gagcgaagcc ggttgcgccc gcgaactatt ttgatttggc
     2701 ggcgcagaac acgagctttg cggcgatcgc agcggcccag tggtgggaac caaacctgac
     2761 gggccgcgag cagcccgaac atttgcgtgg gttgcagctc acggcgcaga tgtttcaagt
     2821 gctcgacgtc gagccggtgc tcggccgcac gtttacggcg gaagaagatc aaccgggacg
     2881 cgagcgcgtg gttgttctca gtcatcgttt atggcaacgg cgtttcggtg gtgatgcggg
     2941 tgttgtcggt cagcaagtca cgtttgacgg tcagagttac acgattatcg gcgtgatgcc
     3001 ggcggagttt cagttcgctc cgttttgggc aacgaatgct gagttgtggg cgcctttgaa
     3061 tctctcggcg cgcgcaaacg atcgcggcgg gcagtcgttg cgagtgttcg cgcgattgaa
     3121 gccggacgtt actcgcgcga tggcccaagc ggatgtcgcg acaatctttc gccgccttga
     3181 acaggaacat ccgcaagcga acaagggact cgcgcttgcg gttgagccgc tgcacgagca
     3241 ggtggtgggg aagacgcgcc cggcgctgct gattctgttt ggtgccgtca gttttgtact
     3301 gctgattgcg tgcgcgaacg tagcgaactt gatgatggcc cgtgcgacgt cgcggcaaaa
     3361 agagatcgcg ttgcgaacgg cgttgggcgc aagcagcacg cgcatcgcgc ggcagttgtt
     3421 gacagagagc gttttgatcg cgttgattgg cggcgcgttt ggtttgttgc tcagcatcgc
     3481 gggcatgaaa gcgttgctgg cgctcggtcc cgaaagtctg ccccgtctgc aaacgatcaa
     3541 gctcgacctc ccgacgcttg gcgtgacgtt tggattgtcg gtaattacgg gactgctgtt
     3601 cggactcgca cccgtgctgc aaacgcgcaa gtggaactgg tacgagtcgc tcaaagattc
     3661 aacgcgcggt tcgtcggccg gacgtagccg cgtaaacgcg cgccgcttgc ttgtgatttc
     3721 cgaagtcgca ctggctttaa tgttgctcgt cggcggcggg ctgatggtgc gcagcttcgc
     3781 tcgcttgcgt gcggtggatc cgggtttcac tcccgaccgc ttgctgacga tgaacgtctc
     3841 gctcgccggc tccgcacatt ccacgcctcc gaagcgagtc gcgttcttca acgagctctt
     3901 gcagcgcgtc gattcattgc ccggcgttca atcggcaagc gcgatcaatc atctgccgct
     3961 ggcgggtgat gtctggaccg tgcctttttt cattgaagga cgtcctgtgc cggcgccggg
     4021 cgaaaagcag ggcgcggttt atcgcatcat ccggcccgat tacttccgca cgatgggcgc
     4081 caccttgctc aaggggcgtg acttcaacgt tcatgataac gacacctctc cgcgggtggc
     4141 gatcgtcaac gaaccattcg ccaggcgtca ttggcccaac gaagatccgc tcggcaaacg
     4201 gattcgcgtc agcgacgaga cggacctgcg cgagatcgtc ggcgtggtga aaccgttgaa
     4261 gcaggatcaa tggacggccg agccgaatct cgagatgtac ttgccgcatt tgcaagcagc
     4321 ctcgccgcgc gggctgacgc tggtgatacg aagcagcggc gatccactcg cgctcgtcgg
     4381 gtcgatcgag aatcaagttt ggtccatcga taagaacctt cccgtgtcgg agatccggac
     4441 gatgcacgaa gtgatcgccg gatcgatcga acagcaccgc ttcaatctgt tcctgcttgg
     4501 tctgtttgcg tttgtcgccc tggtgcttgc gctcgtgggc atctacggcg tgatgagcga
     4561 atcagtcaca gcacgcacgc atgagatcgg catccgcatg gccctcggag cacgagcggc
     4621 cgacgtgttg cggatggtcg tggggcaggg aatgacgctc gccgcgatcg ggatcgcgat
     4681 cggactgttt ggcgcgttct ggttgacacg attcatgacg acgctgcttt acgaagtcag
     4741 tccaacagac agcgccacgt ttctgttgat tccgttggtc gtcgcgctcg tcgttctttg
     4801 cgcttgtttg attcccgcgc gccgcgcgac gaaggtcgat ccgctgatcg cacttagaga
     4861 cgagtgaggt ttttcagatg atgaaagatg ttcgctacgg cattcgaagt ttgttgaagc
     4921 ggccgggatt gactgcggtt gctcttataa ctttagcgct cggtatcgga gtcaacaccg
     4981 cgatcttcag cgcggttgat tctgttttgt tgcggccgct gccgttcaaa gagccggagc
     5041 gcgtgatggc tgtttgggaa cacacgccgc atctcgggat cgcgcgtaat gaatttgcgc
     5101 cggcgaacta tttcgacctg cgccgtcaga accaatcgtt cgaggaagtc ggcgcgtttg
     5161 gccagttgaa cataaatctc accggcgaag gtgagccgga gcagttggac ggacagctcg
     5221 ttacggcgaa tgtcttctcg ttgctcggcg tcccggccgc actcggcaga acgttcgcca
     5281 gcgatgaaga tcaactcggc cgcgagcatg tcgccgtgtt gagcgacgcg ctgtggcaac
     5341 ggcgtttcaa tcgcgatccc ggaatcatca atcgccaggt cacgctcaac ggcgaatcgt
     5401 tcaccgtcgt cggcgtgatg ccgcggaatt tcttttttcc cgagcgcgaa gccgaactgt
     5461 gggtgccgtg ggcgatggag ccgggccagg ctgaaggccg cggcgatcac tatttccgtc
     5521 tggtggcgcg tttgaagccg ggcgtcacgc gcgaacaggc gaatgccgaa gccgaatcga
     5581 tc
//
LOCUS       DASWTX010000033         1946 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_22057, whole genome shotgun sequence.
ACCESSION   DASWTX010000033 DASWTX010000000
VERSION     DASWTX010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22057"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..261
                     /locus_tag="VGD38_00500"
     CDS             <1..261
                     /locus_tag="VGD38_00500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726516.1"
                     /translation="LGEGSHEFEVYFHFAPELELTVREAAVEARAGDAALTVRLLSHN
                     QQPGLVNQHFSPNYGQLVDSVSACWRISGRPGKLSWKIFLTD"
     gene            261..>1946
                     /gene="asnB"
                     /locus_tag="VGD38_00505"
     CDS             261..>1946
                     /gene="asnB"
                     /locus_tag="VGD38_00505"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HEY0726517.1"
                     /translation="MCGICGVWEYGASEGRIEPSLIARMRDEMTHRGPDDSGELIFDE
                     RRGGFGFRRLSIIDLSTAGHQPMHGCDENTWLVFNGEIYNHVTLREDLEARGHKYASR
                     TDSETITHLYEERGLDFIHEIEGDYAIALWDARQQQLVLVRDRIGVKPLYFYHKDGRF
                     IFASEIKAILQHPAVTPDIDEQSLYHYLTFLTTPAPTTLFRDIQKLPAGHVLTLKRDG
                     ALNIKQYWDALPPAQPAIRDESEHRAEILRLLRDSIRKRMMSDVPFGVFLSGGVDSSA
                     NVALMSELMSRPVETFTVGFSDAEYLNELQSARRIADQFGTNHHEVIISEKEMQEFLP
                     RLVFHQDEPIADPVCVPLYYVSQLARDSGTIVVQVGEGSDEIFSGYDNYVRHLRIYEN
                     FWRHAEGLPRVFKRALSSLSRPALEATGRKRAAIELIRRLGADEPLFWGGAVVYDETF
                     KPRVLSQSLRERMNGLSSLRVVEPYLKQIEQERPDSDFLARMTYLELKLRLPELLLMR
                     VDKITMATSVEARVPFLDHHLVEYALGLPRSLKVEGTTGKHILKRALEDILPHD"
BASE COUNT          386 a          564 c          582 g          414 t
ORIGIN      
        1 ctgggtgaag gcagccacga gtttgaagtc tattttcact tcgcgccgga acttgagctt
       61 accgtaagag aagcggcagt cgaggctcga gccggtgacg ccgctctaac tgttcgcttg
      121 ttgtctcaca atcagcagcc gggcctcgtg aaccagcact tttcccccaa ctatggccaa
      181 ttagtggact cggtgtctgc gtgctggcgt atcagcggcc ggcccggcaa actaagctgg
      241 aagatatttc tgactgacta atgtgtggga tttgcggagt ttgggagtac ggcgcgagcg
      301 aaggacgcat agagccttcg ctcatcgcgc gaatgcgcga tgagatgacg catcgcggcc
      361 cggacgactc cggcgagttg atcttcgatg agcgccgcgg cggcttcggc ttccgccgtc
      421 tgtccatcat cgatctttcc accgcgggtc atcagccgat gcacggctgt gacgaaaaca
      481 cgtggctagt cttcaacggc gagatctaca accacgtgac gcttcgcgaa gatctcgaag
      541 cgcgcggtca caagtacgcc tcgcgcaccg actccgaaac gatcacccat ctttacgaag
      601 aacgcggcct cgacttcatc cacgagattg aaggcgacta cgcaatcgcg ctgtgggacg
      661 cgcggcagca acaactcgtg ctcgtccgcg atcgcatcgg cgtcaaaccg ctctacttct
      721 atcacaaaga cggccgcttc attttcgcgt ccgagatcaa ggcgatcctg caacatcccg
      781 cggtcacgcc ggacatcgac gaacaatcgc tctatcacta tctgacgttt ctcacgacgc
      841 ccgcgcccac aacgctcttt cgcgacattc aaaagcttcc cgcgggccac gtgctcacgc
      901 tcaaacgcga cggcgcactc aatatcaagc aatactggga cgcactgcct cccgcgcaac
      961 ccgcgattcg cgacgaaagc gaacaccgcg cggaaatttt gcgcctgctg cgcgactcga
     1021 ttcgcaaacg catgatgtct gacgtgccgt ttggcgtgtt tctctcgggc ggcgtcgatt
     1081 cgtcggcaaa cgtcgcgttg atgtcggaac tgatgtcgcg gccggtggaa acgttcaccg
     1141 tcggttttag cgacgccgag tatctgaacg agcttcagtc ggcgcgccgc atcgccgatc
     1201 agtttggcac gaaccatcac gaggtcatca tctccgaaaa ggagatgcag gagtttctgc
     1261 cgcggctcgt ctttcatcag gacgagccga tcgccgatcc ggtttgcgtg ccgctgtatt
     1321 acgtttcgca gttggcgcgt gactcgggaa cgatcgtggt ccaggtcggc gagggatcgg
     1381 acgagatctt cagcggttac gataactacg tgcgccactt gaggatctat gagaacttct
     1441 ggcgccatgc ggaaggtctg ccgcgtgttt tcaaacgagc gttgtcgagt ttgtcgcggc
     1501 cggcgttgga agcgacgggc cggaagcgcg cggcgattga actgatccgg cggctgggcg
     1561 ctgatgagcc gctgttttgg ggcggcgcgg ttgtttacga tgagacgttc aagccgcgtg
     1621 tgttgtcgca gtcgctgcgt gagcgaatga acggtctgtc gtcgttgcgc gtcgttgagc
     1681 cgtacttgaa acagatcgag caggagcggc ctgattcaga ttttctcgca cgcatgacgt
     1741 acctggaatt gaagctgcgc ttgccggagc ttttgctgat gcgcgtcgac aagatcacga
     1801 tggcgacgag cgtcgaggcg cgcgtgccgt ttctggacca tcatctggtt gaatacgcgc
     1861 tcgggttgcc gcgttcgttg aaagtcgaag gaacgacagg caagcacatt ttgaagcgcg
     1921 cgctcgaaga cattctcccg cacgat
//
LOCUS       DASWTX010000034         3654 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_347311, whole genome shotgun sequence.
ACCESSION   DASWTX010000034 DASWTX010000000
VERSION     DASWTX010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3654
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347311"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..181
                     /locus_tag="VGD38_00510"
     CDS             <1..181
                     /locus_tag="VGD38_00510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726518.1"
                     /translation="VLGIAGQTIAGIVSIGGAVLVLTGLGLAWRRFYAWFAKRAKSKQ
                     TLTNVVKPLPDSVGD"
     gene            206..580
                     /locus_tag="VGD38_00515"
     CDS             206..580
                     /locus_tag="VGD38_00515"
                     /inference="COORDINATES: protein motif:HMM:NF013427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA family transcriptional regulator"
                     /protein_id="HEY0726519.1"
                     /translation="MDAEKLKHFQSLLLTQLRQYTEQIRTDQAAALELYDDGVKDSVD
                     LSVQDLNKEIALRLGERSSQVVADIDQALLRIKEGSYGTCARCGKPIDERRLEALPTA
                     RYDAACQAIIESQNGDDDLPTL"
     gene            complement(590..1504)
                     /gene="xerC"
                     /locus_tag="VGD38_00520"
     CDS             complement(590..1504)
                     /gene="xerC"
                     /locus_tag="VGD38_00520"
                     /inference="COORDINATES: protein motif:HMM:NF001399.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009009 - site-specific recombinase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HEY0726520.1"
                     /translation="MQTLIDQFLEHLRYERNVSAHTLRNYSSDLEQFLDFLDPSGARP
                     RNLPDVTAIDHLTIREWLAELHSAQKKKASIARKLAALRTFFQFLVREGIVELNPAKL
                     VATPRLEKKLPSHLSVEEAIRFIESPDLETDLGKRDRAMLELMYATGVRVAELTTLNV
                     SDVDLHNRLIRVTGKRRKQRIVPFGDPAGDALRGYLQVREKFLLHAPISKRDEEVLFL
                     NYQGTRITTRSVGRMVEKYIRLCAGMHNISPHALRHSFATHLLDSGADLRDIQELLGH
                     ARLSTTQIYTHVSMEKLVEVYDKAHPKA"
     gene            complement(1511..2494)
                     /locus_tag="VGD38_00525"
     CDS             complement(1511..2494)
                     /locus_tag="VGD38_00525"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0726521.1"
                     /translation="MPVLSQSGRRKGGKPAGPGVDPNRPGSPTSPSAPSGTVNDEIDP
                     GDIVKISSNLVPIPVSVIDKRGNAVMNLKLEDFELHVDGQLRTLSELSRSETSVRMAM
                     LFDNSGSLDAAREFEKQAAIRFFRKVMRPKDEAAIYSIETDSYLVQPLTSDVVRLEHT
                     IAMFGKPEGGTSLFDAIFAASTYLRPYSGRRVLVIVSDGIETTSRHTDFDFIVQRVLG
                     DDCQVYVVQTGLYDGANLRALAAERRMEQLTSQTGGAVYLPKTTTELDVAFDQIAADL
                     AHQYVLSYYPSPEQRDGRLHLLDLKIKTRNDVRVRSRKGYYAPKPAASAGW"
     gene            complement(2536..>3654)
                     /gene="trmFO"
                     /locus_tag="VGD38_00530"
     CDS             complement(2536..>3654)
                     /gene="trmFO"
                     /locus_tag="VGD38_00530"
                     /inference="COORDINATES: protein motif:HMM:NF003739.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate--tRNA-(uracil(54)-
                     C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO"
                     /protein_id="HEY0726522.1"
                     /translation="DSLVMAAAAETRVPAGAALAVDRHKFAELITERIESEPHIRLIR
                     EEVKTVPQDEISIIATGPLSSDALTTEIMKLTGSDQMYFYDAIAPIIAADSIDTSLAF
                     RAARYDKGGDDYLNCPLDEQQYAEFYQALIEANSVPLQRFEETRWFEACLPIEELARR
                     GVDTLRFGPMKPVGLRDPRTGREPYAAVQLRQENLMADAYSLVGFQNHLRYGEQARVL
                     RLIPGLQNAEFLQFGQIHRNTYICSPRVLDATMQMRDREGVFFAGQITGVEGYVESVA
                     MGWLAGINAARLAFGRELIAAPLASATGALAHYVSHADTKNFQPVNITFALLPPLAEP
                     AKRVSRRKRERRQLQVELALKEWDEWLTQHTHKEAVPA"
BASE COUNT          777 a         1047 c         1059 g          771 t
ORIGIN      
        1 ggtgctgggc atcgcggggc aaacaattgc aggtatcgtg tcgatcggtg gtgcggtgct
       61 cgtgttgacc gggcttggtc tcgcctggcg ccgcttctac gcctggttcg caaaacgcgc
      121 aaagtcgaaa caaactctta ccaatgttgt gaagccgttg ccagactcag tcggcgacta
      181 atgttatact ggcgcccgtt aaattatgga cgccgaaaaa ctgaaacact ttcaatccct
      241 acttcttact caactgcgcc agtacaccga gcagatccgc acggatcagg ccgccgcgct
      301 tgaactttac gacgacggcg tgaaagacag cgtggacctc tcggtgcagg atctgaacaa
      361 agagatcgcg ctccgtttgg gcgagcgcag ctcacaagtc gttgccgaca tcgatcaggc
      421 tttgctgcgg atcaaggaag gaagctacgg aacctgcgct cgttgcggta agccgatcga
      481 cgaacgcagg ctcgaagcgc tacccaccgc gcgttatgac gccgcgtgcc aggcaatcat
      541 cgaaagccag aacggcgacg acgatctacc cacgctctaa aatcacgaat cacgctttcg
      601 ggtgggcttt gtcgtaaacc tcgacgagct tctccatcga aacgtgcgtg tagatctgtg
      661 tcgttgacag ccgcgcgtgg cccagcagtt cctggatgtc gcgcaagtcg gcgccgctgt
      721 cgagcaggtg tgtggcaaac gagtgtcgca acgcgtgcgg actgatgttg tgcatgcccg
      781 cacagaggcg aatgtatttc tcaaccattc ttcccacgga gcgcgtcgtg atccgcgttc
      841 cctggtaatt caaaaacaac acctcttcgt cgcgtttcga aatcggcgcg tgcagcagaa
      901 acttctcacg aacctgaaga taaccacgaa gcgcatcgcc ggccggatcg ccgaacggaa
      961 cgatccgctg cttgcgccgc ttgcccgtaa cacgaatcaa acggttgtgc agatcgacgt
     1021 ctgaaacgtt caacgtcgtc agttcagcaa cacgcacacc agtcgcatac atcagttcga
     1081 gcatcgcgcg atcccgcttt ccgagatcgg tttccaaatc cggcgattcg ataaacctga
     1141 tcgcctcctc gacggaaaga tgcgacggca gtttcttctc gaggcgcggc gtggcgacaa
     1201 gctttgcggg attgagctcg actattcctt cgcgtaccag aaactgaaag aaggtccgta
     1261 aagccgcgag cttgcgtgca atcgacgcct ttttcttttg cgcggagtga agctccgcga
     1321 gccattcgcg aatggtgagg tgatctatag cggtgacgtc cggaagattg cgcgggcgcg
     1381 cgccgctcgg atcgagaaag tctaaaaact gttcgaggtc gctggagtag ttacgtaggg
     1441 tatgtgcgct gacgttacgc tcgtaacgca ggtgctcgag gaattgatcg atcagcgtct
     1501 gcatcgaaag ctaccaaccg gcagaggccg ccggcttggg agcataatag ccctttcgcg
     1561 aacgcacgcg aacatcattt cgcgtcttga tctttaaatc gagcaggtgc aaacggccgt
     1621 cacgttgttc ggggctcggg tagtaactca acacatactg atgcgcgaga tccgcagcga
     1681 tctgatcgaa cgcgacgtcg agttcagtcg tcgtcttcgg caggtaaacc gcgccgcctg
     1741 tttgcgacgt taactgttcc atgcgccgct cagccgcgag cgcacgcagg ttcgcgccgt
     1801 cgtacaagcc ggtttggacc acgtagacct gacagtcgtc acccagcacc cgctgcacga
     1861 tgaaatcgaa gtcagtgtgc cggctcgtgg tttcgattcc gtctgacacg atcaccagca
     1921 cgcgccggcc cgaatacggc cgcaggtaag tagacgcagc gaagatcgcg tcgaacagcg
     1981 acgtgccgcc ttccggtttg ccaaacatcg cgatcgtgtg ttcgagtcgc actacatcag
     2041 acgtcagagg ttggaccagg taactgtcag tctcgatcga atagatcgcg gcttcgtctt
     2101 tgggccgcat taccttgcgg aaaaacctga tcgccgcctg cttctcaaac tcgcgcgccg
     2161 catcaagact gccgctgtta tcaaacaaca tcgccatccg cacgcttgtt tccgaacgcg
     2221 acaattcact cagcgtgcgc aactggccgt cgacatgaag ttcgaagtct tccagtttca
     2281 ggttcatcac ggcgttgccg cgcttgtcga tcactgaaac gggaatcgga acgaggttgg
     2341 aactgatctt aacgatgtcg cccggatcga tttcatcgtt gactgttccg gacggagccg
     2401 aaggtgaagt tggcgaaccc ggacgattcg gatcgacgcc tggaccagcc ggtttgcctc
     2461 cctttcgccg tccggattga ctcaaaaccg gcaaggctac caggagacaa agaattgtgg
     2521 cgaccgcgag gagcgctaag ccggaacggc ttctttgtgt gtgtgctgag tgagccactc
     2581 gtcccattct ttcagcgcca attcgacttg cagttgcctg cgttcacgtt tcctacgaga
     2641 gacgcgcttt gcgggttcgg cgagcggagg caaaagcgcg aaagtgatgt ttaccggttg
     2701 aaaattcttt gtgtccgcgt gggagacgta atgcgccaaa gcacctgttg cgctagccag
     2761 cggagcggcg atgagttcgc gtccaaacgc caaccgcgct gcgtttatac ctgccagcca
     2821 acccatcgct accgactcga cgtaaccctc gacgcccgtg atctgtccgg cgaagaaaac
     2881 gccttcgcgg tcacgcatct gcatcgtcgc atccagcacg cgcggggaac aaatatacgt
     2941 gttccgatgg atctggccaa actgaagaaa ctccgcgttc tgcaatccgg gaatgagccg
     3001 cagcacacgc gcctgctcgc cgtagcgtag atgattctga aagcccacaa ggctgtatgc
     3061 gtcggccatt aaattttcct ggcgcaactg cacggcggcg taaggctcgc ggccggtgcg
     3121 cggatcgcgc aagcccactg gtttcatcgg gccgaagcgc agcgtgtcaa caccgcggcg
     3181 cgcgagttct tcgattggca gacacgcttc aaaccagcgc gtctcttcga aacgctgcaa
     3241 cgggacgctg ttggcttcta ttaatgcctg gtaaaactcg gcgtactgct gttcgtccag
     3301 cgggcagttc agataatcgt cgccgccttt gtcgtaacgt gcggcgcgga atgcgagtga
     3361 ggtgtcgatt gagtcggcgg cgatgatggg cgcgatggcg tcgtagaagt acatctgatc
     3421 gctgccggtg agcttcatga tttcggtcgt gagtgcgtca gacgacaatg ggccggtagc
     3481 gatgatgctg atttcgtcct gtggaactgt cttaacttct tcgcgaatca agcgaatgtg
     3541 aggctcactt tcgatgcgct cggtgatcag ttccgcaaat ttgtgacgat cgacggcgag
     3601 cgcggcgcct gccgggacgc gcgtttcggc ggcggcggcc atgacgagcg agtc
//
LOCUS       DASWTX010000035         2341 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_411997, whole genome shotgun sequence.
ACCESSION   DASWTX010000035 DASWTX010000000
VERSION     DASWTX010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2341
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411997"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..507
                     /locus_tag="VGD38_00535"
     CDS             <1..507
                     /locus_tag="VGD38_00535"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF012456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEY0726523.1"
                     /translation="RNRRAVIAAEYIGLTGKGRVEFSEALEVARSIIKLYTDDTGIDK
                     VFLIYNEFKSVLSQRVVLEQLLPVARAKEPEPETKTAVTLVDYIYEQPPDEMFSRLLP
                     RLVETQIFRALLESVASEHGARMTAMDSASKNASELIDSLTLNMNRVRQAAITNEIIE
                     VVSGAAAL"
     gene            513..956
                     /locus_tag="VGD38_00540"
     CDS             513..956
                     /locus_tag="VGD38_00540"
                     /inference="COORDINATES: protein motif:HMM:NF016763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEY0726524.1"
                     /translation="MARFLSRYLPLVAWLIFISYASSDSFNAGNTSRIIGPLVLWLFP
                     NTTPETLLGIHIITRKAAHFTEYAILAYLAARAFRTSPRPALANRWFIASLALVVAYA
                     LLDEYHQTFVPSRTGSIYDSLIDIAGGLTALLIIRYRHNRARRFN"
     gene            1018..2103
                     /locus_tag="VGD38_00545"
     CDS             1018..2103
                     /locus_tag="VGD38_00545"
                     /inference="COORDINATES: protein motif:HMM:NF024813.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEY0726525.1"
                     /translation="MGILDRLSPSSQFVEVIEWLDDSGNTLVYRFPVRDQEIKNGAQL
                     IVRESQSAVFVYEGQIADQFPPGRYTIDGGNTPILSKLGAWKYGFNSPMKSEVYFVST
                     KQFQDLKWGTPNPVMMRDPDFGMVRLRAFGIYSIRVADPQSFIKEIAGTNSRFVTEDV
                     EGQLKRTLVSSFTDALGESKIAALDLASNYDELGTFMRGKMNDDFKTWGLELTKFVIE
                     NISLPQDVEAAMDKRTSMGVIGDVGRYTQFQAADAMRDAAQNPSGGAGTGVGLGAGFA
                     LGNAMAGAMTDAMRQSKEGTSGGGAAAPATGADAGVACPNCGNKNSSGAKFCMECGTK
                     LGAVQCSNCQAELPPGAKFCNECGQKI"
     gene            2124..>2341
                     /locus_tag="VGD38_00550"
     CDS             2124..>2341
                     /locus_tag="VGD38_00550"
                     /inference="COORDINATES: protein motif:HMM:NF012337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
                     /protein_id="HEY0726526.1"
                     /translation="MLRGFTRPRRVVITGMGCVTPLGIGREAYWNSLVAGKSGVRRIE
                     TFDPSSFPVQIAAEVPSFDWEAQLNPKDR"
BASE COUNT          513 a          711 c          648 g          469 t
ORIGIN      
        1 cgcaaccgcc gcgcagtgat cgcggctgag tacatcgggc taacgggcaa ggggcgcgtc
       61 gaattttccg aagcgctcga agtcgcgcgg tcgatcatca agctctacac cgacgacacc
      121 ggcatcgaca aagtttttct catctacaac gaattcaaat ctgtgttgtc tcagcgcgtc
      181 gtgttggaac agttgcttcc agtcgcgcgc gcgaaagaac cggagccgga aacaaaaact
      241 gcggtcacac tcgtcgacta catttacgaa caaccgcccg acgagatgtt cagccgtctc
      301 ttgccacgtt tggttgagac gcagatcttc cgcgcgttgc tcgagtcagt cgcatcagag
      361 cacggcgcgc gcatgacggc aatggattca gcctcgaaga acgcgagcga gttgatcgac
      421 agtctgacgc tcaacatgaa ccgcgtccgt caggcagcaa tcaccaacga gatcatcgaa
      481 gtcgtttccg gcgccgccgc gctgtaagtc aggtggccag gtttctcagc cgctaccttc
      541 ctcttgtagc ctggctgatc ttcatctctt acgcctcttc cgacagtttc aacgccggaa
      601 acacgtcgcg catcatcggc ccgctggtac tgtggctgtt tcccaacacg acccccgaaa
      661 ctctactcgg aattcacata atcacgcgaa aagcggcgca ttttacggaa tacgccattc
      721 tcgcttacct cgcggcacgc gcctttcgca cctcgccgcg accggcactt gccaaccgct
      781 ggtttatcgc ctcgctcgcc ctggtcgtcg cctacgcctt actcgacgaa taccaccaga
      841 ccttcgtgcc gtcccgcacc ggctcgattt acgacagttt gatcgatatc gcgggtggtc
      901 taacggcgct actcatcatc cgctaccgcc acaatcgcgc acggcgcttc aactaattcc
      961 gctgtctcag cgtataatcc acgtctgact aaatcctgct aagaatgagg cttaaaaatg
     1021 ggaatacttg atcgtctcag cccgagttca cagttcgtcg aagtaatcga atggctcgat
     1081 gacagcggca acacgctcgt ctatcgattt ccggtgcgcg accaggagat caaaaacgga
     1141 gcacagttaa tcgtgcgcga gtcgcagtcg gctgtgttcg tctacgaggg tcaaatcgcc
     1201 gatcaattcc cgccgggccg ctacacgatc gacggcggca acacgcccat cctgtcgaaa
     1261 ctcggcgcct ggaagtacgg cttcaattcg cccatgaaat ccgaagtcta cttcgtcagc
     1321 acgaaacaat ttcaggacct gaaatggggc acgccgaatc cggtgatgat gcgcgacccg
     1381 gacttcggca tggtgcgtct gcgcgcgttc ggtatctact cgattcgcgt cgcggacccg
     1441 caatcgttca ttaaagagat cgccggcacc aactcgcgtt tcgtcactga agacgtcgaa
     1501 ggccaactca agcgcacgct ggtgagcagc tttaccgacg cgctcggcga atccaaaatc
     1561 gcggcgctcg atctcgcgtc caactacgac gagctcggca cgttcatgcg cggcaagatg
     1621 aacgacgact tcaagacctg gggactcgag ttaaccaagt tcgtgatcga gaacatttcg
     1681 ctgcctcagg acgtcgaagc cgcgatggac aagcgcacgt cgatgggcgt catcggcgac
     1741 gtcggtcgct acacgcagtt tcaagctgct gacgcgatgc gggatgcggc gcagaatccg
     1801 tcaggcggcg cgggcactgg cgttggtctc ggcgcgggct ttgcgctcgg aaacgcgatg
     1861 gccggcgcga tgacagacgc gatgcggcag tcgaaagaag gcacgagcgg cggcggcgct
     1921 gcggccccgg caacgggcgc cgacgctggt gttgcgtgtc caaactgtgg caataaaaac
     1981 agttctggcg caaagttctg tatggaatgc ggcactaaac tgggtgctgt acagtgttcc
     2041 aactgccagg ccgaactacc gcccggcgcg aagttctgca acgagtgcgg ccagaaaatt
     2101 taaccacaga aggttaatcc tgaatgctga gagggttcac gcgtccacgc cgggtagtga
     2161 tcaccggaat ggggtgtgtg acccctctcg gaatcggacg cgaagcctat tggaattcgc
     2221 tcgtcgccgg caaaagcggc gtgcgccgaa tcgagacttt tgatccttca agctttccgg
     2281 tgcagatcgc cgcggaagtt ccttccttcg actgggaagc tcaactcaat cccaaagatc
     2341 g
//
LOCUS       DASWTX010000036         4041 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_325649, whole genome shotgun sequence.
ACCESSION   DASWTX010000036 DASWTX010000000
VERSION     DASWTX010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4041
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325649"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..795)
                     /locus_tag="VGD38_00555"
     CDS             complement(<1..795)
                     /locus_tag="VGD38_00555"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEY0726527.1"
                     /translation="MAIAVLAPQALSQSAKAPEREQLLNGLKLLIWEQPGSPELIVKL
                     RLNSGAAFDLSGKSGQMALLGDLLFPDAATIDYFTDELGGKLDVSVNYDSLTITMVGK
                     ASELEQVISVLRNAILSTQFTPEVVTRMRDARIKSLRDATVSPGMVADRAIAARLFGD
                     FPYGRLAGGSPEDLARVERADVMLAHERFLNSNNATLAIVGGVTRARAFRTVRQLLGP
                     WRKTEKIVPTTFTQPKAVDPRTLIVNVAGPTTEVRLAVRGLARSDAD"
     gene            1144..1722
                     /locus_tag="VGD38_00560"
     CDS             1144..1722
                     /locus_tag="VGD38_00560"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0726528.1"
                     /translation="MLKRAGEGDQAAFLELYDRHRQPIFRFAYRLIGEVDIAEDVTHD
                     CFLSLIRKPENFRPERASLRTYLFAAARNLAMKYFRSSGRETGLDDVAEEPQLSPRHG
                     PLRKLLDEELAAEIRRAVFSLAPLQREALILFEYEGLSLNEIAEITGADAGAVKGRLF
                     RARERLKTILRPYIDSDQELNSGREIVTLKEA"
     gene            1916..3502
                     /locus_tag="VGD38_00565"
     CDS             1916..3502
                     /locus_tag="VGD38_00565"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HEY0726529.1"
                     /translation="MKFCSRCEEEFADKFSFCPVDGTPLTAVSAKVPAAANIAPADID
                     PSLTVSSDNDLSVTKAQGTTPGASRMEVPLNEPAYAAADGNGSMAMVPREEYHLTFLS
                     DQGLVSRLSHELGDVSREYRLTWPEFKRDPFGFTKRTFVGYGNMIIKFLRKPNMLLAI
                     GAAFIGLLVLTGGVLLMDRAQGTSSRIGLVVFGLVAAGLLVALFSTWLGRERGAAVMG
                     AEPSDSRSVVAAMIASFVFLFAILGIIVALDRRHEALVAQNQAEEAELADQIFDIPDE
                     QPTPDPGTAGLNKGSGGGSKPKPEKAAGGGGGGREEAKPASFGKTPQASLTVPQVVAP
                     DPKPPQIKNPSLPVAATVVADPLLVPPDARVLPYGDYKSKSTDPSSGPGTGNGIGTGT
                     GGGIGPGEGGGIGPGRGGNIGGGDRNDGGGGPGGGGGGGDRIYSGRDVTSKARLISKP
                     EPQYTEDARKNQIVGTVVLKVVFSSNGTVTNIRTVSGLPYGLTERAIAAARQIKFQPA
                     TKDGHPVSMWMQLEYNFNLY"
     gene            complement(3503..>4041)
                     /locus_tag="VGD38_00570"
     CDS             complement(3503..>4041)
                     /locus_tag="VGD38_00570"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY0726530.1"
                     /translation="SAATLPEELRSRLCIAGSFSKTYAMTGWRVGYALAPTPWTKAML
                     KVQGHSTSNTNSIAQWAAVEALTGPQESVGIMLAEYTRRREWLLKALCDIPGVSCSQP
                     EGAFYAFPNVRALLKNGIKTSGEFAQRLLEEEHTVVTDGAGFGAEGYVRISYATSMEQ
                     IEEGVGRIRRLAEKVSKS"
BASE COUNT          850 a         1107 c         1228 g          856 t
ORIGIN      
        1 gtctgcatcc gatcgcgcca agccacgaac agccaaacga acttcagtag ttgggccagc
       61 aacgttgacg atcaacgtgc gcggatcgac agctttcggt tgtgtaaaag tcgtgggcac
      121 gatcttctcg gtcttgcgcc atgggccgag aagctgtcgc actgtgcgaa acgcgcgcgc
      181 tctggtcaca ccgcccacaa tcgcgagcgt cgcgttgttt gaattcagga aacgttcatg
      241 cgccagcatc acatcggcgc gctcgacacg cgcgagatcc tcgggtgaac cgcccgccag
      301 acgcccgtac ggaaagtcgc caaagagccg ggccgcgatc gctcgatcgg ccaccatgcc
      361 cggcgagaca gtcgcatcgc gcaggctctt gatacgtgcg tcgcgcatgc gagtgacgac
      421 ttcgggcgtg aattgagtcg agaggattgc gttgcgcagc actgaaatga cttgctcgag
      481 ttcagacgcc ttgccaacca tcgtgatggt cagcgaatcg taattaacgc tgacgtctag
      541 ttttccgccc agctcgtccg tgaaatagtc gatggtggcg gcatcgggaa agagcaggtc
      601 gccgagcagc gccatctggc ccgacttgcc ggacagatcg aaagcagcgc cgctgttgag
      661 gcgcagtttg acgattagct cgggacttcc gggttgttcc cagattagta gttttaatcc
      721 attgagcagc tgctcgcgct cgggagcttt ggcggactgg gagagagctt gtggcgccag
      781 gacggcgatg gccacaagta cagcgataac acggcttatt acgggtgtcg gcatgagtaa
      841 aacatcttag atgccgtatg tttgcccgtc aaccgtttgg cttttcacgg catcctaagc
      901 caggccatct gatgtgggcg gggctgatgt cggcggttcc agccctggga gaaagcaaaa
      961 gagtatgtac ttgccgcccc ttgcgggcta atatcgcacc cggaagcggc aaattaattc
     1021 gtcgggcgca agttttttta ttcagccccc gtaacttttt taagggttga ggtaattaca
     1081 gcaggacgca agttcctgca ggatcgagtg cttggattgc ccgagagaaa cacagacgag
     1141 gcattgctca aaagagcagg tgagggcgac caggcagcct ttctggagtt gtacgaccgg
     1201 caccggcagc caatctttcg tttcgcatac cggttaatcg gcgaagttga tattgccgaa
     1261 gacgtcacgc acgactgctt cctgagcttg attcgaaagc cggaaaactt tcgtccggaa
     1321 cgcgcttctt tgagaactta cttgtttgcg gccgccagaa atctggcgat gaaatacttc
     1381 cgcagctcgg gtcgcgagac gggactcgac gacgtagcgg aagaaccgca gctttcgccc
     1441 cggcatgggc cgttgcgaaa gttgcttgac gaagaacttg ccgcggagat tcgcagagct
     1501 gttttcagtc tggctccgtt gcaacgagaa gcactcattc tcttcgagta cgagggactc
     1561 agtctcaacg agatcgcgga gatcacgggt gcggatgcag gcgcggtgaa gggccgtctg
     1621 tttcgagcgc gggaacgact aaaaaccatt ctgcgaccgt atatagacag cgatcaggaa
     1681 ttgaatagtg gtcgggaaat tgttactttg aaggaggcct gaaatgagcg ttgagccgga
     1741 aaatgagttt atttccgatg atgagctcaa gtcgttgctc gaacgctgga acgcgccagg
     1801 gccttcgaga gttctcgaca agcgaatcgc aaatagtttt gcaagagaat tttcaggtgc
     1861 agacggactg tctcagtcgg tgctgctccc ccataggcga gaagaggtag tatcgatgaa
     1921 gttctgttcc agatgtgaag aagaattcgc tgataagttc agcttctgtc ctgtcgacgg
     1981 aacgccgttg acggccgttt cagcaaaggt cccggcagca gcgaatatcg ctccggcgga
     2041 tatcgaccct agcctgaccg tcagcagcga caacgatctg tcggtcacta aagctcaggg
     2101 aactacgccg ggagcttcca gaatggaagt gccgctaaat gaacctgcct atgcggcggc
     2161 tgacggcaac ggctcgatgg ccatggtccc gcgtgaggag tatcacctta cgttcctgag
     2221 cgaccagggc ctggtttcgc gtctcagtca tgagctcggc gacgtttcgc gcgagtatcg
     2281 actgacgtgg cccgagttca agcgcgatcc gttcggcttc acgaaacgaa catttgtcgg
     2341 ctacggcaac atgatcatca agtttctccg taagccgaac atgttgctcg caattggcgc
     2401 cgctttcatc ggcctgctcg ttcttacggg cggcgtactg ctgatggacc gcgcgcaggg
     2461 cacgtcttct cgcattggcc tggtggtttt cgggttggtc gccgccggct tgctggtagc
     2521 gctgttttca acctggctgg gacgtgagcg tggcgcagcc gtgatgggcg ctgagccttc
     2581 cgactcgcgg agcgtagtcg cggcaatgat cgcctcgttc gttttcctgt tcgcaattct
     2641 cggaatcatc gtggcgcttg atcgccggca tgaagctttg gtcgcacaaa accaggccga
     2701 agaggccgaa ctcgccgatc agatttttga cattcccgac gaacagccga cgcccgatcc
     2761 gggaactgcc gggttgaaca agggcagtgg cggcggcagc aagccgaaac cggaaaaagc
     2821 cgcgggcggc ggtggcggtg gccgtgaaga agccaagccc gcttcgtttg gtaagactcc
     2881 gcaggcttcg ttgacagttc cgcaggtggt agcacccgat ccgaagccac cacaaatcaa
     2941 gaacccgtca ttgccggtgg ctgcgacggt ggttgccgac ccgctgttgg ttccacctga
     3001 tgcgcgtgtg ctgccgtacg gcgattacaa atccaagagc accgatcctt cgtctggtcc
     3061 aggtactggt aacggtatcg gaaccggaac agggggcggt atcggacctg gtgaaggcgg
     3121 cggtattgga ccgggccgtg gcggtaacat cggcggtggc gatcgcaacg acggcggcgg
     3181 tggtcctggt ggcggcggcg gtggtggcga ccgaatttac agcggccgtg acgtgacgtc
     3241 gaaagcgcgt ctgatttcca agcccgagcc gcagtacacg gaagacgctc gcaagaacca
     3301 gatcgtcggt acggtcgtgt tgaaggtagt cttttcttcc aacggaacgg taacgaacat
     3361 ccgcaccgtt tcaggtctgc cgtatggatt gactgaaagg gcgattgccg cagcgcgtca
     3421 gattaagttc cagccggcaa cgaaggatgg gcatccagtc tcgatgtgga tgcagttgga
     3481 atacaacttc aacctttact aatcagcttt tcgagacctt ctctgcaagg cgtcggattc
     3541 gtccgacgcc ttcttctatt tgctccatcg aagtcgcgta agagatgcgc acgtaaccct
     3601 ctgcgccaaa gcccgcgcca tcggtgacga cagtgtgctc ctcttcgagc agccgctgcg
     3661 caaattcgcc ggaagttttt attccgttct tcaaaagtgc acgaacattc gggaaggcgt
     3721 agaacgctcc ttcgggttgc gagcacgaaa ctccgggaat gtcgcacaac gctttcaaca
     3781 gccactcgcg gcggcgcgtg tactcggcga gcatgattcc tacggactcc tgtgggccgg
     3841 tcagcgcttc aaccgcggcc cactgcgcga tcgaattcgt gttcgaagtc gagtggccct
     3901 gcaccttcag catcgctttg gtccatggag tcggtgcgag tgcgtagccg acgcgccagc
     3961 ccgtcatcgc atacgtcttc gagaacgaac ccgcgatgca caagcgcgac ctgagttcct
     4021 ccggcagagt cgcggcactg a
//
LOCUS       DASWTX010000037         2076 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_22118, whole genome shotgun sequence.
ACCESSION   DASWTX010000037 DASWTX010000000
VERSION     DASWTX010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2076
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22118"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..937
                     /locus_tag="VGD38_00575"
     CDS             <1..937
                     /locus_tag="VGD38_00575"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HEY0726531.1"
                     /translation="VTANPNAKFLAGGTNILDLMKEDVERPNELVDLTRLNLAEIKAA
                     PNDGVTIGALAKNTDTANHPLIRKNYPLLTQAILAGASGQLRNMATNGGNLMQRTRCQ
                     YFYDTAMPCNKREPGTGCGAREGLNRIHAIFGWSEKCVATYPGDMANALYALEAQVRV
                     RNASGRERTIPIGDFHRLPGDIPQKDNNLEHGELIVAIDLPKSNFAKNYYYLKVRDRA
                     SYAFALVAVAAALDIDGDRIRQARVVLGSVAHKPWRSQEAEAALSGRPPSEENFRRAA
                     DAALAGAKPLAHNAYKIELGKRAVVRALMHAARLI"
     gene            950..>2076
                     /locus_tag="VGD38_00580"
     CDS             950..>2076
                     /locus_tag="VGD38_00580"
                     /inference="COORDINATES: protein motif:HMM:NF014758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY0726532.1"
                     /translation="MPRYIGKEMSRVDGVAKVTGQAKYAAEFRAPNLAYGFIVLGSIA
                     KGRIASIDTREAERAPGVVRVFTHLNAPKLGPKSSGEDVPPSSREARPREEQDKSFRA
                     LQSDRIYFNMQPVALVVAETYEQARYGARLVKVSYNAEKHTTDTESMRDRGRFPSRGP
                     SKPRGTPEEAMKSAPVKIEAEYRIPIEHHNPMEPHAAVAVWQGDRLTMFDKSQEVYNV
                     RKHLASSFNIPEANVQVISPYVGGAFGSSLRPNYYPSLTAMAARELKRPVKVVYTRTQ
                     MYTGHGYRPYTIQKVALGAARDGKLTSMIHEAVHNTSTFEEFSDETTGFTQQVYACPN
                     VSAPLRITAIDLNTPTWMRAPGAVSGMFALESAMDELAYAL"
BASE COUNT          479 a          643 c          614 g          340 t
ORIGIN      
        1 tgtgactgca aatcctaatg cgaagttctt ggccggtgga accaacattc tcgacttaat
       61 gaaagaggac gtcgagcgtc caaacgaatt ggttgatctg acgcgcctga acctcgccga
      121 gatcaaagcc gctccgaacg acggcgtcac gatcggcgcc ctcgcgaaaa acacggacac
      181 ggcaaaccat ccgctcatac gcaagaacta tcctttatta actcaggcca tcctcgccgg
      241 cgcctcgggc caactccgca acatggccac gaacggcggc aacctgatgc aacgcacgcg
      301 ctgccagtac ttctacgaca cggccatgcc gtgcaataag cgtgaacccg gaacaggctg
      361 cggcgcgcgc gaaggcttga atcgcattca cgcgatcttc ggctggagtg agaaatgtgt
      421 ggccacgtat cccggcgaca tggcaaacgc gctttacgcg ctcgaagctc aagtgagagt
      481 caggaatgct tcgggccgcg aacgcacgat cccgatcggc gactttcatc gcctgcccgg
      541 cgacatacct cagaaagaca acaacctcga acatggcgaa ctcatcgtcg cgatcgatct
      601 cccgaagtct aacttcgcga aaaactacta ctacttgaaa gtcagagatc gagcgagtta
      661 cgccttcgct ctggtcgccg tggctgccgc gctcgacatt gacggcgaca ggatcagaca
      721 ggcacgcgtc gtactgggaa gcgtggccca caaaccgtgg cgaagccagg aagcggaagc
      781 cgcactttcc ggcagaccac cgtcagaaga gaacttccgc cgagccgccg acgcagcgct
      841 cgcgggcgca aagccgctcg cgcacaacgc ctacaagatc gagctgggca aacgcgccgt
      901 cgtgcgcgcg ttgatgcatg ccgccaggct tatatgacga gggggaaata tgccgagata
      961 catcgggaaa gagatgagcc gtgtggacgg cgtagcgaaa gtaacgggcc aggcaaagta
     1021 tgctgcggag tttcgtgcgc cgaacctcgc ctacggattc atcgtgctcg gctccatcgc
     1081 gaagggcagg atcgcgagca tcgacacgcg tgaggcggag cgtgcaccgg gcgtcgtccg
     1141 ggtcttcacg cacttgaatg cgccgaagct cgggccgaag tcatccggag aggacgtgcc
     1201 gccgtcatca cgagaagcga gaccgcgaga ggaacaagac aagtcgttca gggcacttca
     1261 gtccgatcgc atctacttca acatgcagcc ggtggcgctc gtcgtcgccg agacctacga
     1321 gcaggcacgc tacggcgccc gcctcgtcaa agtctcctac aacgctgaga aacacacgac
     1381 cgacacggag tcgatgcgcg accgcgggcg cttcccgtct cgtggtccat ccaaaccgcg
     1441 cggcactccc gaagaggcga tgaagagtgc gccggtgaag atcgaagccg agtaccgtat
     1501 tcccatcgag caccacaacc cgatggagcc gcacgccgca gtcgccgttt ggcagggcga
     1561 tcggctgacg atgttcgaca aatcgcagga agtctataac gtccgcaagc acctcgcctc
     1621 gagcttcaac atcccggaag cgaacgtgca ggtcatctcg ccgtatgtcg gtggagcgtt
     1681 cggctcgtcg ttgcggccta actactaccc gtcgctaaca gcgatggcgg cccgtgagct
     1741 aaagcggcct gtgaaggtcg tctacacgcg aacacagatg tacacgggtc acggttatcg
     1801 cccgtatacg attcaaaagg tcgcactcgg cgcggcgcgt gacggcaagc tcacgtcgat
     1861 gattcacgag gccgtacaca acacctccac cttcgaggag ttctcggacg agacgacggg
     1921 tttcacgcaa caggtgtacg cctgcccgaa cgtatcagcg ccgctgagga tcacggcaat
     1981 agacctcaac acgccgacgt ggatgcgcgc gccgggcgct gtctcgggaa tgttcgcgtt
     2041 agagtcggcg atggacgagt tggcttacgc gctcaa
//
LOCUS       DASWTX010000038         1876 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_412035, whole genome shotgun sequence.
ACCESSION   DASWTX010000038 DASWTX010000000
VERSION     DASWTX010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1876
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_412035"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(3..275)
                     /locus_tag="VGD38_00585"
     CDS             complement(3..275)
                     /locus_tag="VGD38_00585"
                     /inference="COORDINATES: protein motif:HMM:NF016268.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HEY0726533.1"
                     /translation="MQFEWDEQKAASNLNKHGVSFEEAITVFGDPLSDTLPDPDHSLN
                     EHRFIIIGSTESGRILVVAHTDDGQAVRIISAREATHGERQFYEEG"
     gene            complement(279..1178)
                     /locus_tag="VGD38_00590"
     CDS             complement(279..1178)
                     /locus_tag="VGD38_00590"
                     /inference="COORDINATES: protein motif:HMM:NF013328.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase family
                     protein"
                     /protein_id="HEY0726534.1"
                     /translation="MPELPDITVYIEALEQRIQGATLERVLVASPFLLRTAVPPLSSV
                     EKRKVTAVRRLGKRICIGVDGDLWLVLHLMIAGRLHWYEDRAKALKARAIASFVFSSG
                     TLTLTEAGTQRRASLHVVEGEEGLARLDPGGIEVFDVTEKEFAAALQAKNHTLKRALT
                     DPRILSGIGNAYSDEILHTAQLSPFTLTQKLTPAEVHKLFLAIKSSLTDWTERLRTEY
                     RGRFPEKVTAFRPDMATHGKYGEPCPRCGSKIQRIRYGSNETNYCPTCQTGGKLLADR
                     ALSRLLKDDWPRTPEELENLTKG"
     gene            complement(1198..1467)
                     /locus_tag="VGD38_00595"
     CDS             complement(1198..1467)
                     /locus_tag="VGD38_00595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014393940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HEY0726535.1"
                     /translation="MLSFIWWLIIGLIAGAIARLIMPGRDAMSWLATMLLGIVGSIVG
                     GLIGMAIWRSDTADGGFHPGGLLLSVLGAILVLWIWRMIRRRSTV"
     gene            complement(1634..>1876)
                     /locus_tag="VGD38_00600"
     CDS             complement(1634..>1876)
                     /locus_tag="VGD38_00600"
                     /inference="COORDINATES: protein motif:HMM:NF017591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase PhoX"
                     /protein_id="HEY0726536.1"
                     /translation="NGEQFVRGVTRAGEIYDFARTAANDTEFCGGCFDPDGETFYVNQ
                     QGDRGSLPGGPVNGNAVTYAIYGPFNKRAGNNSKRI"
BASE COUNT          369 a          543 c          547 g          417 t
ORIGIN      
        1 cgctaccctt cttcatagaa ctgtctttct ccatgtgttg cttcgcgggc gctgatgatt
       61 cgtacagctt ggccgtcgtc ggtgtgcgcc acgaccagaa ttctacccga ttcggtcgac
      121 ccaatgataa tgaaacggtg ctcgttgagc gaatgatccg ggtcgggcag ggtatctgag
      181 agaggatctc caaacaccgt tatagcctct tcgaaagaga ctccgtgttt gtttaagttg
      241 cttgctgctt tctgttcgtc ccattcaaat tgcatgttct aacccttcgt gaggttttcg
      301 agttcttcgg gtgtgcgggg ccagtcgtct tttaggagac gcgagagggc gcggtcggcg
      361 aggagtttgc cgccggtttg gcaggtgggg cagtagttgg tttcgttgga gccgtaacga
      421 atgcgctgga ttttactgcc gcagcgtgga cagggttcgc cgtactttcc gtgcgtcgcc
      481 atgtcgggac gaaacgccgt caccttctcg ggaaagcgtc cgcgatactc tgtgcgaaga
      541 cgttcggtcc agtctgtgag cgacgatttg atggcaagga agagtttgtg cacttccgcg
      601 ggagtgagtt tttgcgtgag cgtaaacggc gagagttgcg cggtgtggag aatctcgtcg
      661 gaataagcgt tgccgatgcc gctcaggatg cgcgggtcgg tgagcgcgcg tttcagcgtg
      721 tggttcttcg cctgcagcgc ggccgcaaat tctttttcgg tgacgtcgaa gacttcgatc
      781 ccgcccggat cgagacgcgc caggccttct tcaccttcaa ccacgtgcag tgacgcgcgt
      841 ctctgggtgc ccgcttcagt cagcgtcagc gtcccactgc tgaacacaaa cgacgcgatc
      901 gctcgcgcct ttagagcctt cgcacggtct tcataccagt gcaaacgccc ggcgatcatc
      961 aggtgcagaa cgagccacag atccccgtct acaccgatac agatccgctt gccgagccgc
     1021 cgtaccgccg tgaccttccg cttctcgaca ctcgacagcg gcggcacagc ggtgcgcagc
     1081 aggaacggac tcgcgacgag cacacgttcc aacgtagcgc cttgaatccg ttgctcgaga
     1141 gcctcgatgt agactgtgat gtccggaagt tcaggcacta acgtcgttaa cgattcctca
     1201 gactgtgctg cggcgcctga tcatgcgcca gatccagagc acgaggatcg cgcccaggac
     1261 cgaaagcagc agtccgccag gatgaaagcc tccgtctgcg gtgtcggatc gccagatcgc
     1321 cattcctatc aggccgccga cgatcgaacc cacgattccg agtagcattg ttgccaacca
     1381 actcatcgca tcgcggccag gcatgatcaa acgcgctatg gcgccggcga tcaatccaat
     1441 gatcagccac caaatgaaac taagcatagt tatctcctca gtttaagcaa agcatccgct
     1501 ttgcaggggg ctgcgcgggg gaatttgggt gaacgatgcc gcgtttatac tacaagccac
     1561 aagaaagcac aaaaagcacg atcgcttcgc agcgcgcgtg cttgttgtgc ctctgtcgcg
     1621 ggcgcgtgaa ttgtcaaatg cgcttgctgt tgtttccggc gcgcttgttg aatggaccat
     1681 agatcgcgta cgtcaccgcg ttgccgttca ctggtccgcc cggcaggctg ccgcgatcgc
     1741 cctgctggtt cacgtagaac gtctcaccat ccggatcgaa acagccgcca cagaactcgg
     1801 tgtcgttagc ggcagtgcga gcgaaatcgt agatctcacc ggcgcgcgtg acaccacgca
     1861 caaactgctc gccgtt
//
LOCUS       DASWTX010000039         1904 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_44016, whole genome shotgun sequence.
ACCESSION   DASWTX010000039 DASWTX010000000
VERSION     DASWTX010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1904)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1904)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1904
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44016"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            38..1765
                     /locus_tag="VGD38_00605"
     CDS             38..1765
                     /locus_tag="VGD38_00605"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY0726537.1"
                     /translation="MKSFRIILLFIVLIPLPVFAQTWTAKLDNEVRFYLPTDLGVLLV
                     GTEKSLYAIDSASGDTLWRRKDVKLDETDVAPVPGTDLLLISFGSGDKARIEATDLIS
                     GNSIWRSDRIKGAVMQIAVDPTSNLLAVVLAKDAKSRAREDFKRRPLVHVLDLASGNE
                     LWDYEASEVEMMPTRWPDDSGKDVDYTFDNYYPPAFVDGRLYLFYEGLTSFDARNGKA
                     RLREKYRVNEDGLALSEAEPIFDDRFIYVSGHGRVRAISRESGDTEWEAKDLGLTPEI
                     MLIGGVLYVRTGGQFTRIKDGEIVERGSYGLSAIDARSGKVLWRYKGADKGITNMLVP
                     GPNILAVADRDDLIFVDAQTGKRTTRVSHKIERPSFGLLNERGDIVIGGQSEIAAFDA
                     FSGRQLWRARHTPPGRGVFRTVGAIAARAASLYLRFGGTAATAFRGVQIARAVGGLSW
                     SGLTVRSSVSNLQTLATASRRPNYPGRQLKKYGILERVDPSSQLDRLSRFLWHRDRLA
                     SLRGQWMYFYTDLKTRDGNGLAGVNVNTGRTEREVRLPDLDERFVTDEALTLMFSASG
                     NRVYGHSLK"
BASE COUNT          392 a          560 c          561 g          391 t
ORIGIN      
        1 gcggcaaagc atatcagatt taggttatcc tagtcgcatg aagtcgtttc gcatcatcct
       61 tctttttatc gtcttaatcc ctctccctgt gttcgcccaa acatggacgg ccaaacttga
      121 taacgaagta cgattttacc ttccaaccga tttaggtgtc ctgctggtcg gaacagaaaa
      181 atcgctctac gcaatagata gcgcgagtgg cgatacgttg tggcggcgta aagatgtcaa
      241 acttgacgaa acggacgtgg cgccggttcc cggtacagac ctgttgctga tcagttttgg
      301 gagcggggat aaggcacgga ttgaggcaac cgatcttatt tccggcaact caatctggcg
      361 cagcgacagg atcaaaggcg ccgtaatgca aatagccgtc gatcccacgt cgaacctgct
      421 cgcggtcgtg ctggcgaaag acgcaaagag ccgcgcgcgc gaagacttca aacgccgccc
      481 gctcgtacac gtgctcgatc tcgcttccgg caacgaactg tgggactacg aagcgagcga
      541 agtcgaaatg atgcccacgc gctggcccga cgacagcggc aaagacgtgg attacacatt
      601 cgacaattat tatccaccgg cattcgtcga cggccggctt tatctctttt acgaaggcct
      661 tacctccttc gacgcacgca acggcaaggc gcgtctgcgc gagaagtatc gcgtcaacga
      721 agacggcctc gcgctttccg aagccgaacc gatctttgac gacaggttta tctacgtctc
      781 cggtcacggc cgcgtgcgcg cgatctcgcg cgaatcaggc gacaccgagt gggaggcgaa
      841 agatctcgga ctgacgccgg agatcatgct gatcggcggc gtgctctacg ttcgcaccgg
      901 cggacaattc acgcgtatca aagacggtga aattgtcgaa cgcggttctt atggtttgag
      961 cgccatcgac gcgcgctccg gcaaagtgct ctggcggtac aaaggcgccg acaaaggcat
     1021 caccaacatg ctcgtgcctg gtccaaacat tctcgccgtg gcggatcgcg acgacctgat
     1081 cttcgtcgac gcacaaacgg gcaagcgcac cacgcgcgtg tcgcacaaga tcgaacgccc
     1141 ttcgtttgga ctgttgaatg aacggggcga catcgtgatc ggcgggcaat cggagatcgc
     1201 ggctttcgac gcgttcagcg ggcggcaact ctggcgcgca cgccacacac cgccgggccg
     1261 cggagtcttt cgcacggtcg gggcgatcgc tgcgcgcgct gcatcgctct atcttcgttt
     1321 tggcggcacc gcggcaacgg cttttcgcgg cgtgcagatc gcgcgtgcgg ttggcggttt
     1381 gagctggtct ggattgaccg tgcgctcgtc ggtttcaaac ttacagacac tcgcgaccgc
     1441 gtcgcgccgg ccgaattatc ccggcaggca gctcaagaag tacggcatac tcgaacgcgt
     1501 cgatccgtcg agccagctcg atcgcttatc gcgttttctg tggcatcgcg atcgcctcgc
     1561 gtcactgcgt ggacagtgga tgtatttcta cacggatctg aaaacacgcg acggcaacgg
     1621 tctcgcgggt gtgaacgtga acacgggccg cactgagcgt gaagtgaggc tgcccgatct
     1681 cgatgaacgg ttcgtaacgg acgaagcgct cacgctgatg ttctctgcgt cgggcaatcg
     1741 cgtttacggt cactcgttga agtaatggcg tactgcgctg acctgtcctt caaccgcgag
     1801 cgccgctgcg tattcaggcg cgacttcgag atcgtacaac gaccatccct ctgctcgcgc
     1861 taacgctgcc ggttcgccgg gcgcgagcgt gacgtcgaag ctgt
//
LOCUS       DASWTX010000040         1526 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_65625, whole genome shotgun sequence.
ACCESSION   DASWTX010000040 DASWTX010000000
VERSION     DASWTX010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1526
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65625"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            193..>1526
                     /locus_tag="VGD38_00610"
     CDS             193..>1526
                     /locus_tag="VGD38_00610"
                     /inference="COORDINATES: protein motif:HMM:NF045064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726538.1"
                     /translation="MKEIWLGPPLNNNRALLIERCVKLVANNQSDAFIYLAASYPLLE
                     TVTQQILDGNRNRGVWGELPVHLFRGFVRRILYSAVDDDGNGLPPRIPIDHDELPLKR
                     SLISQVLLQLLATNKLKAFAPLAGREGVVNSVATLLGEIERAAKTPAELIEILETRSR
                     DLEKGGNEKRGITQLDFDREVETIYSTYTDLLNRNQFTEEDLDQLRALWVLRGLIDDR
                     GVRVPWLANVELFIIDGFFDFTPVQGEILRQLIPRVPDVVVNLNHDDSNPEIFLPFQE
                     TIGQLQSMATFDVVHTHDYVSPPGVLSQLRENLFNPLRSSDEVSEAPEFAAKEIRYLE
                     CGDRDTEIRTIVREVKRLVLTENFDLADIALVVRERSRYAKTIARVLDEESLPCNLEL
                     RIDAGDVPANRAAIKLITLLEGLTTDQDEPATRISELADLIKSEYFRLSDAEL"
BASE COUNT          331 a          469 c          421 g          305 t
ORIGIN      
        1 atcagcggcg aggagatcga aatcctggag cctctcgaca aatccgcgcg ccccctgaat
       61 ctcgacgaag gcggcctctt ccccgaagcc gcaacctcgc tcgcagacga agattttccc
      121 ctcctgaaag cacaaactgc acaggccggt gacagccgaa aataatctgt gtaagctgct
      181 gcggttactg ctgtgaaaga aatctggtta ggtcctccac taaataacaa tcgagcgctg
      241 ctcatcgagc gctgcgtcaa actcgtcgcc aataatcaaa gcgacgcgtt catctatctc
      301 gccgcgtcgt atccgctgct cgaaacggtc acgcagcaga ttctcgacgg caatcgcaac
      361 cgcggcgttt ggggcgagct gccggtccat ctctttcgcg ggtttgttcg gcgcatcctc
      421 tattccgccg tcgacgacga cggcaacggc ctgccgccgc gcatcccgat cgatcatgac
      481 gaactgccgc tgaagcgcag tttgatctcg caagtgctgc tgcaactgct cgccaccaac
      541 aagctgaaag cgtttgcgcc actcgccgga cgcgaaggcg tcgtcaacag cgtcgccacg
      601 ctgctcggcg agatcgagcg cgcggcgaaa actccggccg aactgatcga gattctcgaa
      661 acccgctcgc gcgatctcga aaagggcggc aacgaaaagc gcggcatcac gcaactcgat
      721 ttcgaccggg aagtcgaaac gatctattcc acttacaccg acttactcaa cagaaaccag
      781 ttcaccgaag aagatctcga tcaactgcgc gcgctgtggg tgttgcgcgg tctgatcgac
      841 gatcgcggcg tgcgcgtgcc gtggctcgcc aacgtcgagc tgttcatcat cgacggtttc
      901 ttcgatttca cgcccgtgca aggcgagatt ttgcggcagc tgatcccgcg cgtgccggat
      961 gtggtcgtca atctcaatca cgacgattcc aacccggaga tcttcctgcc gtttcaggaa
     1021 acgatcggac aactgcaaag catggccacg tttgacgtcg tacacacgca cgactacgtg
     1081 tcgccgcccg gcgtgttgtc ccaactgcgc gagaatcttt tcaatccttt gcggtcgtcg
     1141 gatgaggttt cagaggctcc cgagtttgca gcgaaagaaa ttcgttatct ggagtgcggc
     1201 gatcgcgaca ccgagatccg cacgatcgtg cgcgaggtga agcgcctcgt gctgactgag
     1261 aatttcgatc tcgccgacat cgcgctcgtc gtgcgcgagc gatcgcgtta tgcaaaaacg
     1321 atcgcgcgcg tgctcgatga ggagtcgttg ccgtgcaatc tggaactgcg catcgatgca
     1381 ggtgacgttc ccgcgaaccg cgccgcaatc aagctgatca cgctgctcga gggactgacc
     1441 acagatcagg atgagccggc gactcgcatt tccgagctcg cggatttaat caaatccgaa
     1501 tacttccgct tgagcgatgc tgaact
//
LOCUS       DASWTX010000041         1668 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_65635, whole genome shotgun sequence.
ACCESSION   DASWTX010000041 DASWTX010000000
VERSION     DASWTX010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1668
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65635"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1472)
                     /locus_tag="VGD38_00615"
     CDS             complement(<1..1472)
                     /locus_tag="VGD38_00615"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0726539.1"
                     /translation="MKYVAILLIAIVVGSVAFAQQQTADEVVRVKANLVNIDVIVKDK
                     KGKYIPDLTAEDFTIVENGVAQKIEFFDGPLTKTESTSTTAAAAPGATTTTPPTAAPR
                     NYVALVLDSQTTDITNLKQVREGTIRYIREKITDDDVVALLSVTNGLQMLQPFTQDKN
                     KLIAALESGGVNASATGFEQKDIAGNISSRQAQLASAPSLPPSAITSPGGGSEAAKAM
                     IAQTVLAQFVRLRTALSLQQSRPVLAALAAISEGLRSIPGKKTLVLFSQGFVTPAVLD
                     WQVQSTIDIANRANVAIYIIDSAGLRAGAPASGSLVPSTPMAGVSGIVNQEQRIRAVG
                     GETVFDNVRQEGQNREYDILYRMSGDTGGRFFKGNNDIGLGLERINEEIHARYTIAYR
                     STNQNFDGTFRKVKIDVRRPDAQIISRNGYYAIAPEEIVLLSPADKKLLTGFAKAQSN
                     PELPLSVALTQFRTRDGLFTVPVALELPPGSVKFERKGDKR"
     gene            complement(1477..>1668)
                     /locus_tag="VGD38_00620"
     CDS             complement(1477..>1668)
                     /locus_tag="VGD38_00620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxidase-related enzyme"
                     /protein_id="HEY0726540.1"
                     /translation="EQEKVMLDYVVQITRDAPRISPRDHDRLRAAGFDDKGILQITLI
                     ASWFNYINRVADALGVGRE"
BASE COUNT          308 a          476 c          493 g          391 t
ORIGIN      
        1 cgcttgtcgc ccttgcgttc aaacttcacc gacccgggcg gcaattcaag cgcaaccggc
       61 accgtgaaca gcccgtctcg cgttctgaac tgggtcaacg caaccgagag tggcaactca
      121 ggattcgact gcgctttggc gaaacccgtc aacagtttct tgtccgcggg cgagaggagc
      181 acgatctctt ccggagcaat cgcgtaataa ccgttgcgcg aaatgatctg cgcgtccgga
      241 cgccgcacgt cgatcttcac tttgcgaaac gtgccgtcga agttttgatt cgtgctgcga
      301 tacgcgatcg tgtagcgcgc gtgaatctct tcgttgatgc gttcgaggcc gaggccgatg
      361 tcgttgttgc ctttaaaaaa ccttccgcca gtgtcacccg acatgcgata cagaatgtcg
      421 tactcgcggt tttgtccttc ctggcgcacg ttgtcgaaca cagtctcgcc gccgactgcg
      481 cgaatgcgtt gttcctggtt gacgatgccg gaaactccgg ccatcggagt cgagggcacg
      541 agcgaacccg aagcaggcgc gcccgcgcgc aaaccggcgg agtcgatgat gtagatcgcg
      601 acgttcgcgc ggttcgcgat gtcgatcgtg ctttgcactt gccagtcgag caccgcgggc
      661 gtgacgaagc cttgcgagaa caggacgagg gttttcttgc ccggtatcga tcgcagacct
      721 tcggagatcg cggcgagcgc tgcgagtacg ggacgcgact gttgcaaact caacgcggtg
      781 cgcagtctta caaactgggc cagcacagtt tgcgcgatca tcgccttcgc agcttcggag
      841 ccgccgcctg gtgacgtgat tgcggaaggt ggtaacgaag gcgccgaggc caactgcgcc
      901 tgccgcgaac tgatgttgcc tgcgatgtct ttctgttcga agccggttgc tgatgcgttg
      961 acgccgccgc tctcgagcgc cgcgatcagt ttgttcttgt cttgagtgaa cggttgcagc
     1021 atctgcaaac cgttcgtgac tgagagcagc gcgacgacgt cgtcgtcagt gatcttttcg
     1081 cggatgtatc tgatcgtgcc ttcgcggacc tgcttcaggt ttgtgatgtc ggtggtctgc
     1141 gagtcgagca cgagcgcgac gtaattacgc ggcgcggctg ttggcggagt tgtagttgtt
     1201 gcaccgggcg cggcggccgc cgtcgtggaa gtgctctctg tttttgttaa cggcccgtcg
     1261 aagaactcga tcttctgcgc cacgccattt tcgacaatcg tgaaatcctc tgctgtcagg
     1321 tcagggatgt acttcccctt tttgtccttc acgatcacgt cgatattgac gagattcgct
     1381 ttgactcgca ccacctcgtc ggctgtttgc tgctgcgcga atgcgactga gccaaccacg
     1441 atcgcgatca gaagaattgc aacgtacttc attgtcttac tctctgccga caccgagtgc
     1501 gtcagccaca cgattgatgt agttgaacca tgaagctatc aacgtgatct ggaggatgcc
     1561 tttgtcgtca aaaccggccg ctcgcaaacg atcgtgatcg cgtggcgaaa tgcgcggtgc
     1621 gtcacgcgtt atctgcacga cgtagtcaag catgactttc tcttgctc
//
LOCUS       DASWTX010000042         8670 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_282234, whole genome shotgun sequence.
ACCESSION   DASWTX010000042 DASWTX010000000
VERSION     DASWTX010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8670
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282234"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            416..3538
                     /locus_tag="VGD38_00625"
     CDS             416..3538
                     /locus_tag="VGD38_00625"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEY0726541.1"
                     /translation="MTFVVVGLFASQIVASAAVWIGWKGTEEQLTGVKLELSTLQDIV
                     DVSRDAIIGVTPEGVIMSWNRGARGIYGYTAKEALGSPISMLFDHRRGQEGALLFEKV
                     ARGETVNQFELVHLKKGHHPIDVSLTVSPILDGKTITGASVVARDITERKRAAGSLAQ
                     QAAAMKASMDGMAIIDHYGVCTYLNDAYAKIFGYNEPERLIGASWEMFFFNEELARLK
                     EQIMPAVWRDGSWRGEANGLRVNGGSVPLEISISSVVGGGLVQVVRDITERKKLEDTL
                     RDSSHKDELTGLLNRRGLLKQAAPYFDFARRQKEKLLLLFIDLDGMKKINDEFGHQEG
                     DNALINTAKILNRSFRSSDIIARLGGDEFTVLVTDLNADKEEAITRLNENLKAYNASD
                     ACSHKLAFSIGVAALEPERMTCFEELLEQADQAMYEQKRMKRRRATERSQNKQLGSAP
                     TTESDSSFAVNSIPFALSTGPAAYTNRQGTFDNAAIGMAVVSVDGSWLQVNDALCKLV
                     GYSEQELRATSFQRLTHPDDLRHAQSYIQRVIEGYIQSHEQEKRYIHEQGHTVWVQWH
                     VSLLKDSESGSKRLFFQVQDITDRKLAEEKLTLDTLTGLPNRARFFDLMKLRVARKPA
                     NKQTQCAVLMLDVDRFKLVNDSLGSASADQLLIQIAHRVKTCLRQNDVLARVGGDEFA
                     VLLDDVSGEEEASSVATRIQQALAISFNLLGQEVYTTMSIGIALGADHADGVSDMLRD
                     AETAMHRAKTRGKARYEIFGHDMHGELMSRLKMETDLRRACERDELFVDYQPIVSLRN
                     RTLIGFEALVRWRHPECGLIPPKEFIPVAEETGLILNIGQTVLHSACRQAREWLETYP
                     SSPPLFVSVNLSVKQFNEPGLVENIAQLLEESGLPPRCLKLEITESVFSDNIEAAVKL
                     LTQLRNLGVQLSIDDFGTGYSSLSYLQRFPIDTLKIDRSFVTQMMENEENLAIVRTIV
                     ALAQNLGMDVVAEGVETEDQLRLLRKLECENGQGFLFSTPIGGPQLDQFIADCNVEPQ
                     VIEAPTALVA"
     gene            complement(3535..4764)
                     /locus_tag="VGD38_00630"
     CDS             complement(3535..4764)
                     /locus_tag="VGD38_00630"
                     /inference="COORDINATES: protein motif:HMM:NF021387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050043 - lactate racemase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactate racemase domain-containing protein"
                     /protein_id="HEY0726542.1"
                     /translation="MTILSPTILAGKVTEALDGINPGERVLAIIPDKTRDDNTDFLFP
                     VAAEFLASRGVETFDVLVAQGTHPPMSHEQKLTKIGTTDFAGQLFDHRWDVPAELLTL
                     GELSADTVRELTGGLIEQAVPVSVNKLLAPGVYDVVVVFGATVPHEVAGFAGGAKYFF
                     PGVAGPELTHTTHWLGALAGIENIIGEVETPTRKLIEAAADLIRARVISINSVVSREA
                     NGELITYGLFCGEIREAFRRAAEVSRRVHIRYTGRKYQTVVALLDPHYDEMWVGGKAS
                     YKLGAIVEDGGELIIYAPHLTKLSETHGALIEKYGYAPLESVRDMLGASQELRENLCI
                     AAHLAHVAYAGRTDEHGRVVPRYRITMATGLDEETCRRVNLGYLDHRTLDLEALNSQP
                     GTLVVKDAGRDLYKVAL"
     gene            4768..5538
                     /gene="kduD"
                     /locus_tag="VGD38_00635"
     CDS             4768..5538
                     /gene="kduD"
                     /locus_tag="VGD38_00635"
                     /EC_number="1.1.1.127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005883581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008678 - 2-deoxy-D-gluconate
                     3-dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000272 - polysaccharide catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase
                     KduD"
                     /protein_id="HEY0726543.1"
                     /translation="MSSILNTFKLHERVALVTGASTGLGAAIAIALAEAGAQVACHGN
                     SRSPEATCKEIANADGVAFPITGDLSRPETPKHLVAQTLERFNRLDILINNAGTIRRA
                     PAVEYSEEDWTTVLEVNLSSVFRLSQLAGRHMIESGRGGKIVNIASLLSFQGGITVPA
                     YAASKGGVAQLTKALANEWAKHGINVNAIAPGYMRTTNTAALQADEVRNRQILERIPA
                     GRWGEPADISGAALFLSSPASDYINGHVLVVDGGWLGR"
     gene            complement(5506..5928)
                     /locus_tag="VGD38_00640"
     CDS             complement(5506..5928)
                     /locus_tag="VGD38_00640"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY0726544.1"
                     /translation="MSSTVADDNANGNGAGLGVAQHLNWSTIPVEQMAEGIERQMLVG
                     DRMMICRFRFKPFLVTPEHDHPHEQMTIVERGRVRFFIEGKERIASAGDVLHFPSHCW
                     HGATMMDEEVVLIDIFSPLREDFLNGNGSSPKPAAVDD"
     gene            complement(5939..6778)
                     /locus_tag="VGD38_00645"
     CDS             complement(5939..6778)
                     /locus_tag="VGD38_00645"
                     /inference="COORDINATES: protein motif:HMM:NF016826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016861 - intramolecular oxidoreductase
                     activity, interconverting aldoses and ketoses [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-deoxy-glucuronate isomerase"
                     /protein_id="HEY0726545.1"
                     /translation="MKPEIKQNPITPETCFVPRTHEGHGRRTAVAPGDTAARFLHYAR
                     ITLNAGETQEFSNNDHETGLICLKGSANVTADGESVQLAQYDAVYVARDSQITVEAKE
                     DGCDIAEVSAPVAKRYPTQFVSYKDVRENPRLHLIAGKPPAERDLNVLIGANVQAGRI
                     MAGVTFSTPGNWTSWPPHEHSKLLEEAYLFIDMPAPSFGVQFVYTDPNKPELVQVVRE
                     GDCVLMPQGYHPNVAAPGGQINFLWMMAAIREGEDRLYGVVNVQPEYAGGGSGLEAVS
                     DKK"
     gene            complement(6788..>8670)
                     /locus_tag="VGD38_00650"
     CDS             complement(6788..>8670)
                     /locus_tag="VGD38_00650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726546.1"
                     /translation="AEYSIWSEVNVLTMIRAICVVLLATLTVTAQANTVSTATLREDV
                     NTFLGKELAVHLAAIKSLDPPPERVLGVPTKGEFSWGTFMRSLAAYAESTGQRELAGR
                     DLAQWVGRIGLIEARGGGKAFSQLYAALALRHFGRDLKTNALWQSLSPTEQNAWLSLL
                     NPERFYDPKTNRVINLPENYLGVAARIASVGYELGTSKDREFLDRLIDRSAVQFLEGH
                     LYADDAPPTGRFDRYSNEYARYVWEAAEIAGRKDILETLRPSLKTQMRLWWDIVSEDG
                     YGYNWGRSQGVVSYLDTPEIVGFLAKHAEFRPASLADLAALYYQAWNYLRNDYRTDTH
                     LLSIFAFGRGTYAYISREREWQQTTGFFGKLANSHTPIMNALEKEGIASFPIVPVLPP
                     VARFEFFRRTPERVAGVWVVRQGALRFALPITTGPKPGMSDYLPAPYGLTGFAAPVEQ
                     IYPVLTPHIELGDGRVVVATDGADSINPSPDGLSLRVRWTKWAVVGTKSGQLEDVGLV
                     TEVNWRIEGDTLVREEVLSSTKPVPVRLWKLVVPSSYDQVSTEYKKGARIDIFFSPRG
                     RLEVRADATLPLFASLKAAGDGPLGKGVHGAVPLHLQLEMRTVTVSPGRPLKFKVTLS
                     VS"
BASE COUNT         1876 a         2628 c         2406 g         1760 t
ORIGIN      
        1 cacaattgat cggcttctgc ggtgtcctta tagactgtcc ggacgttgag atcgcaagca
       61 agaggatcaa gctggtagag attagggtcc tgatcatggc ccaacatctt actctcaatt
      121 taacttcctt caagtcagaa tgcttccccg cctcggttaa cctgactggg cgctatgcga
      181 ttttcgggga gttttgccgg ggcgaaagag tggcacggga gtggctaaga gggtgaggcg
      241 aggtcccccc gcaagctttg aaaattcgac cccagaatgt tctcccaagc acatgctttc
      301 gaacggtaac agtttcatct cacgagtcag tcgccagtta tggcccctcc ccgtctttat
      361 aattcccggc ctcctgggtc tctgcttttt tgctcccgcg cttctcggct cgaagttgac
      421 tttcgttgtc gttggccttt tcgcatctca gatcgtcgcg agtgcggcag tctggatcgg
      481 ttggaaagga actgaagaac aactaaccgg cgtcaaactc gaactctcca cgctacagga
      541 catcgtcgac gtttcgcgcg acgccatcat cggcgttacg cctgaaggcg tgatcatgag
      601 ttggaatcgc ggcgcgcgcg gcatctatgg ttacaccgcg aaagaagccc tcggctcgcc
      661 gatctcgatg ctgttcgatc atcgccgcgg tcaggaagga gcgctgctgt ttgaaaaggt
      721 agcgcgcggc gagactgtta accaattcga actggtccac ttgaagaagg gccatcatcc
      781 aatcgacgtt tctttgaccg tctctccaat actcgatggc aaaacgatca caggcgcttc
      841 cgtcgttgcc cgcgacatca ccgaacggaa acgcgcggcc ggctctcttg cccaacaagc
      901 cgccgcgatg aaagcttcga tggacggcat ggccattatc gatcattacg gcgtctgcac
      961 ttacctcaac gatgcgtacg caaagatctt cggttacaac gagcccgaac gtttgatcgg
     1021 cgcgagctgg gaaatgtttt tcttcaacga agagcttgcg cgtctcaaag aacagatcat
     1081 gccggccgtt tggcgcgatg gttcgtggcg cggtgaagcg aacggcttgc gagtcaacgg
     1141 cggctcggtg ccgctggaga tttcgatctc gagcgtcgtg ggcggcggtc tcgtgcaagt
     1201 ggtgcgcgac atcaccgaac gcaagaaact cgaagacacg ttgcgcgaca gttcgcataa
     1261 agacgaacta accggactcc tgaatcgccg cggcttgctc aaacaagcag cgccctattt
     1321 cgacttcgcc cgccgtcaaa aagaaaagct gttgctcctg ttcatcgacc tcgacggcat
     1381 gaagaagatc aacgacgagt ttggtcacca ggaaggtgac aacgcactca tcaacacggc
     1441 gaagattttg aaccgcagtt tccggtctag cgacatcatc gcccgcctgg gcggcgacga
     1501 gttcaccgtt ctcgttaccg atctgaacgc cgacaaggaa gaagcgatca cgcgtctcaa
     1561 cgaaaacctc aaagcttaca acgcaagcga cgcatgcagt cacaaactgg ctttcagcat
     1621 cggcgtcgca gcgctcgaac ccgaacgcat gacgtgcttc gaagaactgc tcgaacaagc
     1681 cgaccaggcc atgtacgaac agaagcgcat gaagcgccgc cgcgcaactg aacgaagcca
     1741 aaacaaacaa ctgggatcag ccccgacaac tgaatctgat tcatcgttcg cagtcaactc
     1801 gatccccttc gcgctctcga ccggccccgc ggcttacaca aaccgccagg gcactttcga
     1861 taacgccgcg atcggcatgg ctgtcgtttc cgtcgacggc agttggctgc aagtcaacga
     1921 cgcgctctgc aaactcgtgg gctactccga acaggaattg cgcgcgacca gttttcagcg
     1981 gctcacgcat cccgacgatc tacgccacgc gcagtcgtac atccagcgcg tgatcgaggg
     2041 atacattcag agtcacgaac aggaaaagcg ttacattcac gagcagggac acacggtctg
     2101 ggtgcagtgg cacgtgtcgc tgttgaaaga ctccgaaagc ggttcgaagc gtttattctt
     2161 ccaggtgcag gacatcaccg atcgcaaact cgcggaagaa aaactcacgc tcgacacgct
     2221 aaccggtctg ccgaatcgcg cgcggttctt cgatctgatg aaactgcgcg tcgctcgcaa
     2281 acccgcgaac aaacagacgc agtgcgccgt gctgatgctc gacgtcgatc gtttcaagct
     2341 cgtcaacgac agtctcggca gcgcgagtgc cgatcagttg ttgattcaga tcgcgcaccg
     2401 ggtgaagacg tgcttgcggc agaacgatgt gctcgcgcgc gtcggcggcg atgagtttgc
     2461 cgtgttgctc gacgacgtgt cgggtgaaga agaggcgtcg tcggtcgcaa cgcgcattca
     2521 gcaggcgctt gcgatttcgt tcaatttgtt gggccaggaa gtctacacga ccatgagcat
     2581 cggcatcgcg ctcggtgcgg accacgccga cggcgtttcc gatatgttgc gcgacgccga
     2641 gaccgcgatg caccgcgcca aaacacgcgg caaagcgcgt tacgagatct tcggtcacga
     2701 catgcacggc gagctgatga gccgtttgaa aatggaaacg gatcttcgcc gcgcgtgcga
     2761 aagagatgag ctctttgttg attatcaacc gatcgtgtcg ctgcgaaacc gcacgctgat
     2821 cggcttcgaa gcgctcgtgc gctggcgcca tccggagtgt ggtctcatac cgccgaaaga
     2881 attcattcca gtcgccgaag agacgggctt gatcctgaac atcggccaga ctgtgctgca
     2941 ctcagcgtgt cgtcaggcgc gcgagtggct ggaaacgtat ccgtcctcac cacccttgtt
     3001 cgtgagcgtc aacttgtcag tgaagcagtt caacgaaccg ggcctggttg agaacatcgc
     3061 tcagttgctc gaagagtcgg gtctgccgcc gcgttgtctc aagctggaga tcacggagtc
     3121 ggtgttcagc gacaacatcg aagccgcggt gaagctgttg acgcagttgc gcaatctcgg
     3181 cgtgcagttg agcatcgacg acttcggcac cggttattcg agtttgagtt atctgcaacg
     3241 ctttccgatc gacactttga agatcgatcg ctcgttcgtg acgcagatga tggagaatga
     3301 agagaacctc gcgatcgttc gcacgatcgt ggcgttggcc cagaatctcg ggatggacgt
     3361 cgtcgcggaa ggtgtcgaga cggaagatca gttgcgcttg ttgcggaagt tggaatgcga
     3421 gaacgggcag ggatttttgt tctcgacccc gatcggcggc ccccagctcg atcagtttat
     3481 tgcggactgc aatgtcgagc cgcaagtgat cgaagcgccg acggcgttgg ttgcttaaag
     3541 agcaactttg taaagatcgc gtccggcgtc tttcacaacc agcgtgccgg gttgtgagtt
     3601 cagcgcttcg agatcgagcg tgcggtggtc caggtagccg aggttgaccc gcctgcaagt
     3661 ttcttcatca agaccagtag ccatcgtgat gcggtaacgc gggacgacgc gtccgtgctc
     3721 gtcggtgcgg ccggcgtaag cgacgtgcgc gaggtgcgcc gcgatgcaga ggttttcacg
     3781 cagttcttgt gacgcgccca gcatgtcgcg cacgctttcg agcggcgcgt agccgtattt
     3841 ctcgatcaat gcgccgtgtg tttctgagag tttcgttaag tgcggcgcgt agatgatcag
     3901 ttcgccgccg tcttcgacga tcgcgccgag tttgtagctc gcttttccac caacccacat
     3961 ctcgtcgtaa tgcggatcga gtagcgcgac cacggtttgg tatttccggc ccgtgtaacg
     4021 gatgtgtact cgcctgctga cttcggccgc gcgccgaaac gcttcacgga tctcgccgca
     4081 aaacaaaccg taggtgatca actctccgtt tgcttcgcgt gagacgaccg agttgatcga
     4141 gatcacgcgc gcgcgaatca ggtccgcggc ggcttcgatg agtttgcgcg ttggcgtttc
     4201 aacttcgccg atgatgtttt cgatgccggc gagcgcgccg agccagtgag tcgtgtgcgt
     4261 cagttccggt ccggcaacgc cgggaaagaa atacttcgcg ccgcctgcga agcccgcgac
     4321 ttcgtgcggc accgtcgcgc cgaaaacgac aacgacgtcg taaacacccg gcgcgagtag
     4381 tttgttgacg ctcaccggaa ccgcttgttc gatcaatccg cctgtaagct cacgcaccgt
     4441 gtccgcgctc aactcgccga gagtgagtag ttcggcgggc acgtcccaac gatgatcgaa
     4501 aagctgtcct gcaaaatctg tggttccgat cttcgtcagc ttttgctcgt gcgacatcgg
     4561 cggatgcgtg ccttgcgcaa ccaacacgtc gaaagtttcg acaccgcggc ttgcaagaaa
     4621 ttccgctgcg acaggaaaca gaaaatcggt gttgtcgtcg cgtgtcttgt cgggaatgat
     4681 cgcgagcacg cgctcgccgg gattgatgcc gtcgagtgct tctgtgactt tgccggcgag
     4741 aattgttgga cttagaatcg tcaaactttg agctcaatcc tgaatacatt caaactacac
     4801 gaacgcgtcg cgttagtcac cggagcatca accggcctcg gcgccgccat cgccatcgcg
     4861 ctcgcggaag caggcgcaca ggtcgcttgc cacggcaaca gccgttcgcc tgaagcaacc
     4921 tgcaaagaga ttgcaaatgc cgatggcgtt gcctttccga tcaccggtga tctgagtcgc
     4981 ccggaaacac ccaaacacct tgtcgcgcaa acgctcgaac gtttcaaccg tctcgacata
     5041 ctcatcaaca acgcgggcac gattcgccgc gcgccggcag tcgagtattc ggaagaagat
     5101 tggaccacgg tgctggaagt gaatctgtcg agtgtgtttc ggctctcgca actcgcgggc
     5161 aggcacatga tcgagagcgg gcgtggcggc aagatcgtga acatcgcgtc gctgctttcg
     5221 tttcagggag gcattacggt gccggcgtac gcggcgtcga aaggcggcgt ggcccaactc
     5281 acgaaagcgc tcgcaaacga gtgggccaaa cacgggatca acgtcaacgc catcgcgccc
     5341 ggctacatgc gaaccaccaa caccgccgcg ttgcaggccg acgaagttcg caaccgccaa
     5401 atcctcgaac gcatccccgc cggccgctgg ggcgaacccg ccgatatctc cggcgccgcc
     5461 ctcttcctct cctccccagc aagcgattac atcaacggcc acgtattagt cgtcgacggc
     5521 ggctggcttg ggcgatgatc cgtttccgtt gagaaagtcc tcgcgcaggg gcgagaagat
     5581 gtcgatcagc acgacctctt cgtccatcat cgtcgcgccg tgccagcagt gagaggggaa
     5641 atggaggacg tcgcccgcgg aggcgatgcg ctctttgcct tcgatgaaaa atcgcacgcg
     5701 cccgcgttcg acgatcgtca tttgttcgtg cggatgatcg tgctcgggtg tgaccagaaa
     5761 tggtttgaaa cgaaagcggc agatcatcat gcggtcgccc accagcatct ggcgctcgat
     5821 gccttcggcc atctgctcca ccggaatcgt cgaccaattc aaatgctgcg cgacgccgag
     5881 cccggcgccg tttccattcg cgttgtcgtc tgcgacagtg ctagacattt ctggtcctct
     5941 actttttgtc actaacagcc tcgagacccg atccaccgcc cgcgtactca ggctgcacgt
     6001 tcacgacgcc atacaaacga tcctcaccct cgcgtatcgc cgccatcatc cacagaaaat
     6061 tgatctgccc gccgggcgcg gccacgttcg ggtgataacc ctgcggcatc aacacgcaat
     6121 ccccctcgcg cacgacctgc acgagctcgg gtttgttcgg atcggtgtag acaaactgca
     6181 cgccaaacga aggcgcgggc atgtcgatga acaggtaggc ttcctcgagt agtttcgaat
     6241 gctcgtgagg cggccacgag gtccagttgc cgggagttga aaacgtcacg ccggccatga
     6301 tgcggcccgc ctgcacgttc gcgccgatca gcacgttgag atctctttcg gcaggcggct
     6361 tgccggcaat caaatgcagc cgcgggttct cgcgcacgtc cttgtacgac acaaactgtg
     6421 ttggataacg cttcgccacc ggcgcggaga cttccgcaat atcgcatcca tcttcttttg
     6481 cttcaaccgt gatctgtgaa tcacgcgcaa cataaaccgc gtcgtactgg gccagttgaa
     6541 ccgattcacc atcagcggta acgttcgcgc tgcccttcaa acagatcaaa ccagtctcgt
     6601 gatcgttgtt tgaaaactcc tgggtctcgc ccgcgttgag cgtgatgcgc gcgtagtgca
     6661 aaaaccgcgc agccgtgtcg ccgggcgcga cagccgtacg ccgtccatgc ccctcatgcg
     6721 tacgaggcac gaaacaggtt tcgggtgtaa ttggattttg ttttatttcg ggtttcatcc
     6781 ctccccctca actcaccgac agcgtgacct tgaacttcag cggcctgcct ggactaaccg
     6841 tcacagttct catctcgagt tgcaagtgca gcgggaccgc gccgtgcacg cctttcccca
     6901 gcggaccatc acccgccgcc ttgagcgaag caaagagggg taacgtcgcg tccgccctca
     6961 cctcaagcct tccgcgcggc gaaaagaaaa tatcaatacg ggctcccttt ttgtactccg
     7021 tcgaaacctg atcatacgac gacggcacca ccagtttcca aagacgaacg ggaaccggtt
     7081 tagtcgaact caacacttct tctctgacaa gcgtgtcgcc ttcaatgcgc cagtttactt
     7141 cggtaacaag tcccacgtcc tcgagttgac cggactttgt gcctacgacc gcccacttag
     7201 tccaacgcac acgcaagcta aggccatcag gagagggatt tatggaatcg gcgccgtccg
     7261 tcgcaacaac tacacgaccg tcgcctaatt cgatgtgcgg cgtcagcacc ggatagatct
     7321 gttccaccgg cgcggcaaat cccgtcaagc cgtacggcgc gggcaagtaa tccgacattc
     7381 ccggctttgg accagtcgtg atcggcaacg caaaccgcaa cgcgccctga cgcaccaccc
     7441 aaacacctgc cactcgttcc ggcgtgcgac gaaagaactc aaaccgcgcc actggcggca
     7501 acaccggcac gatcggaaac gacgcaatgc cttccttctc gagcgcgttc atgatcggcg
     7561 tgtgcgagtt cgccagctta ccgaaaaagc ccgtcgtctg ttgccactcg cgctcgcgag
     7621 aaatgtacgc gtaggtcccg cggccaaacg caaagatcga aagcaggtgc gtgtcggtgc
     7681 gatagtcgtt ccgcaaataa ttccacgcct ggtaatacaa cgccgcgagg tcggccagcg
     7741 acgccggtcg aaactccgcg tgcttagcca aaaacccgac gatctcgggc gtgtcgagat
     7801 aactgaccac gccctgactg cgcccccagt tataaccgta accgtcttcc gaaacgatgt
     7861 cccaccacaa acgcatctgc gtcttcaacg acggccgcag cgtctccaga atatctttcc
     7921 gtccggcaat ctccgccgct tcccaaacat atcgcgcgta ctcgtttgaa taacgatcga
     7981 aacggcccgt cggcggcgca tcgtcagcgt agagatggcc ttcgagaaac tgcaccgccg
     8041 aacgatcgat caaacgatcg agaaactcgc gatccttcga ggtgccaagc tcgtacccaa
     8101 cactcgcaat gcgcgccgcc acgccaagat aattctccgg caaattgatg acccgattcg
     8161 tcttcggatc ataaaaacgt tccggattca gcagcgacaa ccacgcgttc tgctcggtcg
     8221 gcgaaagact ctgccacaaa gcatttgttt ttagatccct tccgaaatga cgcaacgcga
     8281 gcgcggcgta cagttgcgaa aaagccttac cgccgccgcg cgcctcgatc aaacctattc
     8341 gccccaccca ctgcgccaaa tcgcgtccgg caagctctcg ctgcccggtc gattccgcat
     8401 acgcagcgag cgaacgcatg aacgtgcccc acgagaactc acccttcgtc ggcacgccca
     8461 acacacgctc cggcggcgga tcgagcgact tgatcgccgc aagatgcacc gcaagctctt
     8521 taccgagaaa cgtgttcacg tcctcgcgca acgtggcggt ggaaacggtg tttgcttgcg
     8581 ctgtgactgt cagcgtggca agcagtacaa cacagattgc acggatcatc gttagaacgt
     8641 taacttcaga ccaaattgaa tattccgcgg
//
LOCUS       DASWTX010000043         1959 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_217074, whole genome shotgun sequence.
ACCESSION   DASWTX010000043 DASWTX010000000
VERSION     DASWTX010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1959
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217074"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(98..>1959)
                     /locus_tag="VGD38_00655"
     CDS             complement(98..>1959)
                     /locus_tag="VGD38_00655"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY0726547.1"
                     /translation="RVLGNNADNLDLSESTSELEQTLRVLGNNADNLDLSESTSELEQ
                     TDQINAVDITADGKRILYRKGRDFFLVSSEAPAKVDEGRQDFSKMEVRVVPAEEWRQI
                     FHESVRIMRDWFYDPNHHGQNLAALESEYAAYLPTTVRRSDLNRLMQQMLGSVSVSHL
                     GVGGGDAAQSGGSGNRIGLLGADYEIANGKYRFKKISRSTNYASPAGPFSAPLDQPGV
                     DVREGDYLIKVNDQAVEAEKNVLGYFENLVGRPVKLTVSASADGANARTYTVFPALGE
                     NRLRRANWAEENRKLVEKLSGGRLGYIFIEGYSGEGIMNAVRGLTGYADKHGIIIDQR
                     FNGGGITPDYLIEWMQRKPLYYYMFRGGDDIATPVNPPPPVKVMLINELNGSAAETGA
                     LMFKLAKVGPLVGKRTFGGGIGPYFFTPALIDGGQIRLPNRAAYDPSGASWGIENIGV
                     APDFDVEITPADVIAGRDPQLEKAVEVALAQISKNPMYVPKRPAFPVHPGEQSGVTSV
                     SALPQPGSAFPAPAAKPSQTPTPAVADGKFAAFVGSYDGGPMGVLVVRQEADKLIAID
                     PGGGRVELVPEATADTFTPAVGGKVSFERDASGKVTGIVVTLPNGQTIKGRKV"
BASE COUNT          391 a          609 c          530 g          429 t
ORIGIN      
        1 cgaaaccgat cgatctcgat cgcatgaata tactaatcgc ccggcttctc tcgcctgaag
       61 gttccggccc cctcttcaaa caaagctagc ccccgaatca aacctttcgt cctttgatcg
      121 tctggccgtt cggaagcgtc acgacgattc ccgtcacttt gccgctcgcg tctctttcaa
      181 aacttacctt gccgccaact gccggcgtga atgtatcagc agtcgcttcg ggcaccagct
      241 ccacgcgtcc accaccggga tcgatcgcaa tcaacttgtc cgcttcctgc ctgacaacga
      301 gcacacccat cgggccgcca tcgtagctgc cgacgaacgc ggcgaacttg ccatcggcga
      361 ctgccggcgt tggtgtttgc gagggcttgg ccgcgggcgc gggaaacgcc gagcccggct
      421 gcggcagtgc agacaccgac gtcacgcccg attgctcgcc cggatgaaca ggaaacgccg
      481 gacgcttcgg cacgtacatc gggttcttcg aaatctgcgc cagcgcgact tccactgctt
      541 tctcgagctg cggatcgcgc ccggcgatca catcagcagg cgtgatctcg acgtcgaaat
      601 caggagcgac accgatgttt tcaatacccc acgaagcacc actcggatcg tacgcagcac
      661 gattcggcaa acgaatctgc ccgccgtcaa tcagcgccgg cgtaaagaaa tacggaccaa
      721 tgccgccgcc gaaagtacgc ttgcctacga gtggtccaac cttcgccagc ttgaacatta
      781 acgcaccagt ctccgcggcc gaaccgttca gttcgttgat gagcatcacc ttcaccggcg
      841 gcggaggatt gacgggcgtg gcgatgtcgt cgccgccgcg aaacatgtag tagtaaagcg
      901 gcttgcgctg catccattcg atcaggtagt cgggcgtgat accgccgccg ttgaaacgct
      961 gatcgatgat gatgccgtgc ttgtctgcgt atccggtcag gccgcgaacg gcgttcatga
     1021 tgccttcgcc gctgtagcct tcgataaaga tgtaaccgag ccgcccaccg gaaagctttt
     1081 cgaccagctt gcggttttct tcagcccagt tcgcgcgtcg cagacggttt tcgccgagcg
     1141 cgggaaacac cgtgtaggtt cgcgcgttgg caccgtcagc gcttgcggac accgtgagct
     1201 tcaccggacg tccgacgagg ttttcgaaat aaccaagcac gttcttttcc gcttcaaccg
     1261 cctggtcgtt gaccttgatc aggtagtcgc cctcgcgaac gtcaactccc ggctggtcca
     1321 acggcgcact gaatggtcca gcaggcgacg cgtagttcgt cgagcgagag atctttttga
     1381 aacgatattt gccgttggcg atctcgtaat cggcgccgag cagaccgatg cggtttccgc
     1441 ttccgccgga ctgtgcagca tcgccgccgc ctacgccgag atggctgacg gagacagagc
     1501 cgagcatctg ttgcatcagt cgattgagat cgctacggcg aactgtcgtc ggcaagtacg
     1561 cggcatactc gctttccagt gcggcgagat tttgtccgtg atgattcggg tcgtagaacc
     1621 agtcgcgcat gatgcgcacg gattcatgaa atatctggcg ccattcctcc gccggaacaa
     1681 cacgcacttc catcttgctg aagtcctgcc gcccttcatc gactttcgcc ggagcttcag
     1741 aagaaacgag aaagaagtcg cgtcctttgc gatagagaat ccttttgccg tcagcagtga
     1801 tgtcgaccgc attgatctgg tctgtttgct caagttcgct cgttgactcg ctcaggtcaa
     1861 gattatctgc attgttgcca agcactctca atgtttgctc aagttcgctc gttgactcgc
     1921 tcaggtcaag attatctgca ttgttgccaa gcactctca
//
LOCUS       DASWTX010000044         2988 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_108932, whole genome shotgun sequence.
ACCESSION   DASWTX010000044 DASWTX010000000
VERSION     DASWTX010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2988)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2988
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108932"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            330..2672
                     /locus_tag="VGD38_00660"
     CDS             330..2672
                     /locus_tag="VGD38_00660"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT domain-containing protein"
                     /protein_id="HEY0726548.1"
                     /translation="MRNVSLTLAVLLGVTFLGLATLTTTTKSQEITPSSHFHGAANVI
                     IPQSRAYSLSGQQRQVQITGVTAEVRILQQVATTTMDVGLDHPTRQIQEAEMLIPVPD
                     GAVVRSFTFAGSAKESTAKLLPKEEAQSIYRSIVSKLRDPALLEFASYSLIRSSVFPV
                     PAGGKQRVRIVYEHVLKADGNRVDYVLPRSESFEASATPWSISLRISSSAPISGVYSP
                     SHQVNVEHTGNQHALVRTAANQQLEPGPFRLSYLADSSSVTASLLAYPDARVGGGYFL
                     LLAGVPADMQRTEVAMKREVTLVIDRSGSMNGNKIEQARAAALQVLEGLEDGEAFNII
                     DYSDTVSKFSAKPVIKSANTLLQARGYIQTIKAVGGTNIHDALVEAMRQTPTANMLPI
                     TIFLTDGVPTSGVTSETAIRKAVVAANVHKRRVFSFGVGYDLNAPLLTSIANATRATP
                     TFVFPNENVETKVSQVFKRLSGPVLADPKLATLDSAGAVTTRAVRDLLPGELSDLFEG
                     DQLVVLGQYQSDDPLHFRLSGNYLGTPRTFDLKFDLSKATTRNAFVPRLWASRKIARM
                     IETITEAGAETTATARPAYSSSSIAYNSHGMSPAPRAVQTDPKLKELVDEILRLSTEY
                     GILTEYTAFLATDGTDFSNLELLNSRTRDSLVNNAQSVRSGMGSVSQAANNTIQKSSA
                     NMNRSNSYLTQNMERVEITTVQQITDRTFFKRNNRWVDAGALKKEAAKPDQVVEFGTP
                     EFYRLVDRLVRDGREGILALSGELLLMVDGKTVLIKAPPK"
     gene            2693..>2988
                     /locus_tag="VGD38_00665"
     CDS             2693..>2988
                     /locus_tag="VGD38_00665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726549.1"
                     /translation="MVKFYIRWTRLFALFAFVATLVLTTAIYWRLTYYRVWLSSTSPS
                     GKYTVELTGDKGRGGLVTYAVVKYNLLENGKPLTRNRLAHYGDAMDISFELAYP"
BASE COUNT          700 a          883 c          801 g          604 t
ORIGIN      
        1 gaaatcgacc aacgacgtcg gcatcatcac gcttccgcaa aaccggggtc atctggcaat
       61 cgcggtcctg ataagcgagt cgaaactgca ggacacagct caggaaaagt tgattgccga
      121 cttagcccga gcagcgtacg atgcttatgc aacgggcgcg aactgaccaa aagttcgagg
      181 tccgcgtggc aacgctgccg cgcgacgctc catcctaagg ccacgcgcaa ccggtttgca
      241 gcccacgcaa tgccggaaaa ttctttcagt tgtgcgtaat aggtctccca accttccaag
      301 tagttacagt tcagcttcct gaggtgtcta tgcgaaacgt aagcctaacc ctggcggtcc
      361 tcctcggcgt tacatttctt ggccttgcga ccctaaccac caccaccaaa agccaggaga
      421 tcacgccgtc cagccacttc cacggcgccg ccaatgtcat catcccgcag tcgcgcgcct
      481 actcgctttc cggacaacaa cgacaggtgc agatcaccgg cgtgaccgcg gaggtgcgga
      541 ttctgcaaca agtggcgact acgacgatgg acgtgggcct cgaccatcca acgcggcaaa
      601 ttcaggaagc cgagatgctg attcctgtcc ccgacggcgc cgtcgttcgc tctttcacgt
      661 ttgccggttc ggcgaaggag tcgaccgcga aactgcttcc gaaggaagag gctcaatcaa
      721 tctaccgttc gatcgtttcc aaactacgcg accccgctct gttggagttc gccagttaca
      781 gcctcatccg ctccagcgtg tttccggttc cggccggcgg caagcagcga gtgcgaatcg
      841 tctacgaaca cgtcttgaag gccgacggaa accgagtcga ttacgttttg ccgcgcagcg
      901 aatcttttga agcttccgcg actccatggt ccatctcgtt gcgaatcagt tcctcggctc
      961 ccatttccgg agtctactcg ccgagtcatc aggtgaatgt cgaacatacc ggcaaccagc
     1021 acgcactcgt gcgtacggcc gcgaaccaac aactcgaacc cggaccgttt cgcctttcat
     1081 accttgcaga ctcgagttcg gtaacagctt cgcttctggc gtacccagat gcgcgcgtcg
     1141 gcggtggtta ttttctgctg ctcgccggtg tgcctgccga catgcagcgc acagaggtgg
     1201 cgatgaaacg cgaagtgacg ttagtcatcg atcgttccgg cagcatgaac ggaaacaaga
     1261 tcgagcaggc tcgtgcggct gcgttgcagg ttctcgaagg actcgaagac ggagaagcgt
     1321 tcaacatcat cgactattcc gacaccgtct cgaagttctc cgcgaaaccg gtgatcaaaa
     1381 gtgcgaacac gttgctgcaa gcacggggtt acattcaaac tattaaagcg gtcggcggca
     1441 caaacattca cgacgcactc gtggaagcaa tgcggcaaac tccgaccgcg aatatgttgc
     1501 cgataacgat ctttcttacc gacggcgtgc cgacctcagg tgtaaccagc gaaaccgcga
     1561 ttcgaaaagc cgttgtcgca gctaacgtac acaaacgtcg cgttttcagt tttggtgttg
     1621 gttacgatct gaatgcgccg ctgctgacgt cgatcgctaa tgcgacgcgc gcgacaccaa
     1681 catttgtgtt tccaaacgag aacgtcgaaa ccaaggtgag ccaggtgttc aaacgtctct
     1741 cgggaccagt gttggcggac ccgaagctgg cgactctgga cagcgctgga gcagtcacga
     1801 cacgcgccgt acgcgatctt ctgccgggcg aactaagcga tctttttgaa ggcgaccagt
     1861 tggttgtgtt gggacaatac caatctgacg acccgctgca ttttcgactc agcggaaact
     1921 acctcggaac tccgcgcacg tttgatctga aattcgacct gtcgaaagcc acaacgcgaa
     1981 acgcgtttgt gcctcgtctc tgggccagca gaaaaatcgc gcggatgatc gaaacgatta
     2041 cggaagccgg cgcggagacc acggctacgg cacgtcccgc ttattcatcc tcgtcaattg
     2101 cttacaactc ccacggcatg agccccgcac ctcgtgctgt gcaaaccgat ccaaaactga
     2161 aagagctggt cgacgagata ctgcggctct caaccgagta cggcatcttg acggaataca
     2221 ccgccttcct cgccacggac ggcactgatt tcagcaacct ggaattgctg aactcacgta
     2281 cgcgcgactc gctggtaaac aacgcgcaga gcgttcgcag tggaatgggc agcgtgagcc
     2341 aggccgccaa caacactatc cagaaatcct cggcgaacat gaaccgctcc aactcttacc
     2401 tcacgcagaa catggaacgg gttgaaataa ccactgtcca acaaatcacc gatcgcacct
     2461 tcttcaaacg taacaaccgc tgggtggacg cgggcgcgtt gaagaaagag gctgccaagc
     2521 ccgatcaggt cgtcgagttc ggcacacccg aattctacag actcgtcgat cggctggtgc
     2581 gtgacggaag agaaggaata ctcgcactgt caggagagtt gctgctgatg gtcgacggca
     2641 aaacggtact aatcaaggcg ccgccgaagt aatccggcgt gccgaagcag gcatggtgaa
     2701 gttttacatc aggtggacca ggctgtttgc gttgtttgcc ttcgtggcga ctctggtctt
     2761 aacaaccgcc atttattggc gtcttaccta ttaccgtgtg tggctgtcga gcacgtcgcc
     2821 ttccggcaag tacacagtcg aattgacggg cgataaagga cgaggagggc ttgtgactta
     2881 cgcggtggtc aaatacaacc tccttgagaa cggaaaacca ctcacccgca atcgccttgc
     2941 tcactatggc gacgcgatgg acataagctt tgagctggcc tacccgga
//
LOCUS       DASWTX010000045         1885 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_152158, whole genome shotgun sequence.
ACCESSION   DASWTX010000045 DASWTX010000000
VERSION     DASWTX010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1885
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152158"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..298
                     /locus_tag="VGD38_00670"
     CDS             <1..298
                     /locus_tag="VGD38_00670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726550.1"
                     /translation="YVAAYSDFTEIKLKPAEFLLANRDRFNRGLQATLISSKEITLDG
                     ETGLEFVSENPAANIKSQLFLIGNRLFQTATVVPKDTNQTEWTDRFLASFKFVK"
     gene            complement(300..1058)
                     /locus_tag="VGD38_00675"
     CDS             complement(300..1058)
                     /locus_tag="VGD38_00675"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF017501.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990107 - thiazole synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HEY0726551.1"
                     /translation="MNIGGREFTSRLIIGTGKYRSYEEMRSAHTASGAEMVTVAVRRV
                     PLDRSSESFLDHLDPALQILPNTAGCYSADDAIRTARLAREALQTDLVKLEVIGDQTT
                     LFPDNEQTLEAARVLVKEGFVVLPYFNDDLIMAKKLLDAGCAAIMPLAAPIGSGLGVQ
                     NPANLRIMREQLPDATMIVDAGVGTASDAAVAMELGADAVLMNTAIAEAQDPEKMATA
                     MKLAIQAGRLAYQAGRMPKRLYASASSPLAGVIK"
     gene            complement(1078..1284)
                     /gene="thiS"
                     /locus_tag="VGD38_00680"
     CDS             complement(1078..1284)
                     /gene="thiS"
                     /locus_tag="VGD38_00680"
                     /inference="COORDINATES: protein motif:HMM:TIGR01683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HEY0726552.1"
                     /translation="MRVYVNGESRELSGPTSLAELITQLDLPAARIAVELNRAVVRRN
                     DWSTTVLQDEDRIEVVHFVGGGSA"
     gene            complement(1301..>1885)
                     /locus_tag="VGD38_00685"
     CDS             complement(1301..>1885)
                     /locus_tag="VGD38_00685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726553.1"
                     /translation="VAYEIVSEDVEPSVVEPEPVFDAEPVADGSVPALVQEFGPDFEL
                     EYGPITQEWAPPPPRVEEPVEEVVEEEVAPEAELVEAAEEVPVEEPLPDGLFIALLDD
                     EEFYSGEKYTLRVLISNRTGGEEVPLQNVAVSIKILGTTFRPLIYSLKTERDGVASVA
                     TQIPEFNSGRAAVLVRAVAKDQAAELRRIIHPVK"
BASE COUNT          398 a          601 c          499 g          387 t
ORIGIN      
        1 ctacgtcgcg gcttacagcg acttcacaga gattaagctg aagcccgctg agttcctcct
       61 tgctaatcgc gaccggttta atagaggact gcaagcgaca ctgatctcca gcaaggaaat
      121 cacgctcgac ggcgagacgg gactggagtt cgtgagtgag aaccccgccg ccaatataaa
      181 gtcgcaactg tttttgattg gaaaccgtct gtttcagacc gcaaccgtcg tcccgaagga
      241 caccaatcag acagaatgga ccgacaggtt tttggcgtcg ttcaagtttg ttaagtgagc
      301 tacttgatca cgcccgccaa cggactcgac gcactcgcgt acaaacgttt cggcatgcgg
      361 ccagcctgat acgccaaccg tccggcttga atcgcgagct tcatcgcggt cgccatcttc
      421 tccggatcct gtgcttccgc gatcgccgtg ttcatcaaca ccgcatccgc gccgagttcc
      481 atcgccactg ccgcatcgct cgcagttccc actccggcgt caacgatcat cgtcgcgtca
      541 ggaagctgct cgcgcatgat gcgcaggttc gcggggttct gcacacccag gcccgatccg
      601 atcggcgcgg ccagcggcat gatcgccgcg cagcctgcgt cgagcagttt cttcgccatg
      661 atcagatcgt cgttgaaata aggcaggacg acgaagcctt ctttgacgag aacacgcgcg
      721 gcttcgagtg tctgttcgtt gtcgggaaag agcgtcgttt gatcgccgat gacttcgagt
      781 ttgacgagat cggtttgcaa cgcttcgcgc gcgagccgcg ccgttcgtat cgcatcgtcg
      841 gctgaataac agcccgcggt gttcggtaaa atctgcaaag ccggatcgag atggtcgaga
      901 aacgattcgc tactgcgatc gagcggcaca cgccgcactg caacagttac catctccgcg
      961 cccgaagccg tgtgcgcgct gcgcatctct tcgtagctgc gatacttccc tgttccgata
     1021 atcaagcgcg aagtgaattc gcggccgcca atattcatag taaaactcta caccgaacta
     1081 agcagatcca ccaccgacga aatgaacaac ctcgatccga tcctcgtcct gaagcacggt
     1141 cgtgctccag tcgttgcggc gcaccacggc gcgattcagt tcgacggcaa ttcgcgccgc
     1201 aggcaaatca agttgcgtga ttagttctgc gagggaagtc ggaccggaga gttctcggga
     1261 ttcgccgttg acgtaaacgc gcaacgctct tcttacaacc tcatttcacc ggatggatga
     1321 tgcgccgcag ttcggcggcc tgatctttcg ccaccgcgcg cacgagcacg gctgcgcggc
     1381 ccgaattgaa ctcgggaatc tgcgtcgcca cactcgcgac gccatcgcgc tcagtcttca
     1441 acgaatagat caaaggccgg aaagtcgtgc cgaggatctt gatcgacacg gccacgttct
     1501 gtaacggcac ttcttcgccg ccggtacgat tgctgatcag cacccgcagc gtgtacttct
     1561 cgccggaata aaactcctcg tcgtcgagca gcgctataaa gaggccatcc ggcaacggct
     1621 cttcaaccgg cacttcctca gccgcttcaa ctagctccgc ttccggcgct acttcttctt
     1681 cgacaacttc ttcaaccggt tcctcgacac gtggcggagg aggcgcccac tcctgcgtga
     1741 tcggcccgta ctcgagctca aaatccggcc cgaactcctg gaccaacgcc ggcaccgagc
     1801 cgtcggcaac cggctccgcg tcgaaaaccg gctctggctc aacaacactc ggctctacgt
     1861 cctcggaaac aatttcgtat gcaac
//
LOCUS       DASWTX010000046         4024 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_282264, whole genome shotgun sequence.
ACCESSION   DASWTX010000046 DASWTX010000000
VERSION     DASWTX010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4024
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282264"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            37..1035
                     /locus_tag="VGD38_00690"
     CDS             37..1035
                     /locus_tag="VGD38_00690"
                     /inference="COORDINATES: protein motif:HMM:NF005741.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase-like protein"
                     /protein_id="HEY0726554.1"
                     /translation="MNLTTNYLGMVLKNPIVASSSPLSHTVDSIRRLEDSGAAAVVMY
                     SLFEEQIGFDSYYIDQHLTQGIDSYAESISYFPDMQSYNVGPDEYLNLIRRAKEAVNI
                     PIVGSLNGTSVGGWTDYATLIEEAGADAIELNVYYLPTSTEITGLEIEALYLDILSSV
                     RQVVTIPVAVKLSPFFSSIANMASRLNEHGADGLVLFNRFYQPDFDLENLEVAPRLVL
                     SNSNDLRLPLRWVAILYGRLNADLAITSGIHTSQDVIKGLMAGAKVTMMASELLQNGV
                     RRISQVLNELVSWLQAHEYESVAQMIGSMSQKHCAEPAAFERANYMKMLQSYRPLN"
     gene            1049..1765
                     /locus_tag="VGD38_00695"
     CDS             1049..1765
                     /locus_tag="VGD38_00695"
                     /inference="COORDINATES: protein motif:HMM:NF014090.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005384 - manganese ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030026 - intracellular manganese ion
                     homeostasis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VIT1/CCC1 transporter family protein"
                     /protein_id="HEY0726555.1"
                     /translation="MEHEHSPDAIHKRLESGPTQNYLRDWIYGGIDGAVTTLAVVTGV
                     AGARLSTWIILALGFANLFADGFSMAASNYLGTRAEHDDWRRLEKIEHRHIDLAPEGE
                     REEVRQIFERKGFTGKDLERIVELTTSDRERWVQTMLVEEYGLPHAVRSPWIAALSTF
                     TAFVVCGLAPLLPYLFGSEYSLAISVTLTGFVFLTIGSIKSRWSTSSWWHSGLTTLLV
                     GAVAAALAYLAGVISSRLLA"
     gene            complement(1770..2513)
                     /gene="aqpZ"
                     /locus_tag="VGD38_00700"
     CDS             complement(1770..2513)
                     /gene="aqpZ"
                     /locus_tag="VGD38_00700"
                     /inference="COORDINATES: protein motif:HMM:NF003838.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015250 - water channel activity [Evidence
                     IEA];
                     GO_process: GO:0006833 - water transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin Z"
                     /protein_id="HEY0726556.1"
                     /translation="MTEYSLSQRLTAEFLGTLWLVLGGCGSAVLAAAFPEVGIGLLGV
                     SLAFGLTVLTMAYAVGHVSGGHFNPAVTIGVCTAGRHAAKDVIPYIVAQIAGAIVAAG
                     VLYLIASGKAGFDVTAGFAANGYADHSPGGYSLVAALIAEVVFTFFFLLVILGATDKR
                     AHQASAGMAIGLALTLIHLVSIPVTNTSVNPARSTGPALFVGGWAITQLWLFWVAPIV
                     GAVLAGLAHRFLDVRDKEHEPAFAQTVTP"
     gene            complement(2635..3021)
                     /locus_tag="VGD38_00705"
     CDS             complement(2635..3021)
                     /locus_tag="VGD38_00705"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0726557.1"
                     /translation="MAGTRILVADDHEEVRNLIVRLLSRQFEVLAAVGDGIAFLEAVE
                     RLKPDVCILDISMPKMSGIEVAQRIKQRHSTIRIVFVTLHEDFDFQTAAFATGAEGYV
                     TKARMAGDLLFAVSEVLAGRTFCHSF"
     gene            complement(3153..3794)
                     /locus_tag="VGD38_00710"
     CDS             complement(3153..3794)
                     /locus_tag="VGD38_00710"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0726558.1"
                     /translation="MKRPRVILADDHTLILDALKNLLEPEFEVVGMFADGRALMEGAQ
                     ALNPNVIVLDIAMPNMNGLNAGERLKQAMPLVKLVYLTMNHDPDMAGDAFRLGASAYL
                     LKNSAAAELQNAIREVVRGGYYITPLMTKGMDGSYIQNFKLRKSTSPLTLRQKEVLQL
                     LAEGRSMKEVAFVLNVSPRTVAFHKYTMMEHLQIRSNAELIEYAMRSSIVAAA"
     gene            complement(3823..>4024)
                     /locus_tag="VGD38_00715"
     CDS             complement(3823..>4024)
                     /locus_tag="VGD38_00715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726559.1"
                     /translation="GCGFNTNSDLMERGLGFISMKERLHLVGGRINVYSKPLRGTRIE
                     VSVPLKLQAESSVKPIYSTPDE"
BASE COUNT          938 a         1186 c         1062 g          838 t
ORIGIN      
        1 gctgaaccaa caccggcgta acggggataa aaagggatga atctgacaac caactacctt
       61 ggcatggttc taaagaaccc gattgtggcc tcttcgtcgc cactctctca caccgttgac
      121 agcatccgcc gtcttgaaga cagtggcgcc gccgccgtgg tgatgtattc actgtttgaa
      181 gagcagatcg gtttcgacag ctactacatc gaccagcatt tgacgcaggg tatcgatagc
      241 tacgccgagt cgatcagtta cttccccgac atgcagagct acaacgttgg tcccgacgaa
      301 tacctcaacc tgattcgccg cgcgaaagaa gcagtcaaca ttccgattgt cggcagcctg
      361 aacgggactt ccgtcggcgg ctggaccgac tatgccacgt tgatcgaaga agctggcgct
      421 gacgctatcg agctgaatgt ttattacttg ccgacgagca ccgagatcac gggcctcgag
      481 atcgaagcgc tttatctcga catactttcc tcagtgaggc aggtcgtgac gatcccggtc
      541 gcggtaaaac tcagcccgtt cttcagttcc atcgcaaaca tggccagccg gttgaacgaa
      601 cacggcgccg atggcctcgt gcttttcaat cgcttctacc agcctgactt cgatctggaa
      661 aacctcgaag tagcgccgcg ccttgttttg agtaattcaa acgatctgcg tttgccgttg
      721 cgctgggtgg cgatactgta cggccgtttg aacgccgacc tcgcgatcac gagcggcatt
      781 cacacctcgc aggacgtcat caagggtttg atggccggcg ctaaagtcac gatgatggcg
      841 tcggagctgc tgcaaaatgg cgttcgccga atcagccagg tgttgaacga actggtctcg
      901 tggctgcaag cgcatgagta cgagagcgtg gcgcagatga tcgggtcgat gagtcaaaag
      961 cactgcgccg agcccgccgc ttttgaacga gcgaactaca tgaagatgct gcaatcgtac
     1021 cggccgctga actaaaatcc ggcctacgat ggaacacgaa cattcacctg acgcgattca
     1081 caaacgactc gagagtggac caacccaaaa ttacctgcgc gactggatct acggcggcat
     1141 cgacggagcg gtaactacgc tcgcggtcgt caccggcgtt gccggcgcac gtctttcgac
     1201 ctggataatt ctggcgctgg ggtttgcgaa cctgtttgcc gacgggttct cgatggcggc
     1261 gagcaactat ctcggcaccc gcgccgaaca cgatgactgg cggcgattgg aaaagatcga
     1321 acatcgtcac atcgatctcg cgcccgaagg cgagcgcgag gaagtgagac agatcttcga
     1381 gcgcaaaggc ttcaccggca aagatctcga aaggatcgtc gagcttacaa cttccgatcg
     1441 tgagcgttgg gtccagacga tgctggtgga agagtacgga ttgccgcacg cggtgcgttc
     1501 accgtggatc gcggcactca gcacgttcac cgcgtttgtg gtgtgtggcc tggcgccgct
     1561 gctgccttat ctattcggca gtgagtactc gctggcgatc tcagtgacgc tgacgggttt
     1621 cgtcttcctg accatcggat cgatcaagag cagatggtcc acctcttcgt ggtggcattc
     1681 cggtctcacc acgcttctcg tcggcgccgt cgccgccgcg ctggcctatc tcgcgggcgt
     1741 gatctcgagc cgtttgttgg cgtgacgatt taaggcgtaa ctgtctgcgc gaaggccggc
     1801 tcgtgctctt tgtctcgaac gtcgagaaat cggtgcgcga ggccggcgag cactgcgccg
     1861 acaatcggcg cgacccagaa cagccacaac tgcgtgatgg cccaaccacc cacaaaaagc
     1921 gctggtccag tgctgcgcgc cggattgacc gaggtgtttg taaccggaat cgaaaccaaa
     1981 tggatcaacg ttaacgccaa cccgatcgcc atgcctgccg aggcttgatg cgcgcgcttg
     2041 tcggttgctc ccagtattac gaggagaaag aagaacgtga aaaccacttc tgcaatcaac
     2101 gccgcgacga gcgagtaacc accaggcgaa tgatcggcgt aaccattcgc ggcgaacccc
     2161 gcagtgacat cgaaaccggc tttgccactc gcgatgagat aaagcactcc ggcggcgaca
     2221 atcgctccgg caatctgcgc cacgatgtaa ggaatcacgt ccttcgcagc atgacggccc
     2281 gcggtacaca cgccaatagt caccgcggga ttgaagtgcc cgccggacac atggcccact
     2341 gcgtacgcca tcgtcagcac cgtaagtcca aacgctaacg acacgcccag cagaccgatg
     2401 ccgacttccg gaaaagccgc ggccagcacg gcactgccgc aaccaccaag aaccaaccag
     2461 agcgttccca aaaactccgc cgtcaaccgt tgtgaaagcg agtactccgt catgatcaat
     2521 tcctttcagc tttgcctgaa ctcttctctg tgttctcagt gcctctgtgg ttcaaaaatg
     2581 cttaggaaaa attaaccaca gagacactga gacaccgagt ttgcaataaa gaagtcagaa
     2641 cgagtgacag aacgttcgcc ccgccaaaac ttcgctcact gcaaacaaca gatctccagc
     2701 cattctcgct ttcgtaacgt agccttccgc gcccgtcgcg aaagccgcgg tctggaagtc
     2761 gaaatcctcg tggagcgtta cgaacacgat ccggatcgtc gagtggcgct gctttatccg
     2821 ttgcgcgact tcgatcccgc tcatcttcgg catcgagata tcgagaatac aaacatccgg
     2881 tttcagacgc tcgacggctt ccaaaaacgc gatcccgtcg ccaaccgccg ccagcacttc
     2941 aaactgccgg ctcaacaaac gcacgatcag attgcgtact tcctcatgat catccgccac
     3001 taaaatacga gtgccggcca actcgagctc ctccgtcgga acgtgcggat ccgtccctct
     3061 tgtcataggt ctgaaacaac gcgtcaatgg taagcaactc gcgccgtaaa cagaactggc
     3121 aaaagttaca ggtcagtcaa cagttcaatc gtctatgccg cagccactat cgagctgcgc
     3181 atcgcatact cgatcaactc ggcattactt ctgatttgaa ggtgctccat catcgtgtac
     3241 ttgtgaaagg caacggtgcg tggagaaacg ttgaggacaa aagctacctc tttcatcgag
     3301 cgcccttccg ccaacagttg caacacctct ttctgccgca acgtcaacgg actggtgctc
     3361 tttcgcaact tgaaattctg aatgtatgaa ccgtccattc ccttcgtcat caaaggcgtg
     3421 atgtagtagc cgcccctgac gacctcgcga atggcgttct gcaactcagc cgccgcggaa
     3481 ttcttgagca aataggctga agcgcccaaa cgaaaagcgt cgcccgccat atcgggatcg
     3541 tggttcatcg tgaggtaaac gagttttacc agcggcatcg cctgtttgag ccgctcgcct
     3601 gcattcaggc cgttcatgtt cggcatggcg atgtcgagaa cgatgacgtt ggggttgaga
     3661 gcctgggcgc cttccatcaa ggcgcgcccg tcggcaaaca tgccgacgac ttcaaattct
     3721 ggctccagca aattcttcag cgcgtcaaga ataagggtat gatcgtctgc aagaataacg
     3781 cgggggcgtt tcataatttc ccttcctttc agctcttaca agctattcgt cgggtgttga
     3841 gtaaatcggt ttcactgaag actcggcttg caacttcaag ggaaccgaga cctcaatgcg
     3901 agtaccccgc aacggcttcg agtaaacatt aatcctgccg ccaacgagat gtagacgttc
     3961 cttcatgcta atgaagccca ggcctctctc catcaagtct gaattggtgt tgaaaccaca
     4021 gcca
//
LOCUS       DASWTX010000047         7286 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_303895, whole genome shotgun sequence.
ACCESSION   DASWTX010000047 DASWTX010000000
VERSION     DASWTX010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7286
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303895"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..564)
                     /locus_tag="VGD38_00720"
     CDS             complement(<1..564)
                     /locus_tag="VGD38_00720"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HEY0726560.1"
                     /translation="MTNINFRIEDRVARITLARPPLNVFHIAMMREIAAALVESAQRE
                     VVAIVFDADKSCRAFSAGVAIEEHVEETIYQMLDSFHSIFRQLEQIAKPTIAVVDGAA
                     LGGGCELVAACDIVIASDRARFGQPEIKLGVFPPVAAVLLPLVIGEKRARELILTGEI
                     IDSAEAGRLGLCNHVVPSAHLEGKLTEV"
     gene            complement(561..2468)
                     /locus_tag="VGD38_00725"
     CDS             complement(561..2468)
                     /locus_tag="VGD38_00725"
                     /inference="COORDINATES: protein motif:HMM:NF036516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEY0726561.1"
                     /translation="MHKGPLFSGALLTLLLFLFTNVAAAQTTHSAAPEIAFTIAMPRP
                     HTHLFEIDVAIKRGPTAAVPATEQLVMPVWTPGSYLIREFQRQVQDFSAVDAGGQPLK
                     WEKTNKNTWRITTGGAREWHARYQVYANELSVRTSELNSNHAFWNNANLLMYLDGFLK
                     SPSTVRVLTPDVWKVATGLPGVAGQRNTFRAENFDVLYDSPFEASNFKSILFNVKGVP
                     HRIVIDGEGNYDPERMRRDVQKIVETQVELMGGEIPYRDYTFILHLRNNAGGGLEHAN
                     STALGYPRFGFRIRSGDRSTSAAPNAGDRAEPDYRGFLSLVSHEFFHLWNVKRIRPDA
                     LGPFDYTQENYTKLLWVAEGITDYYADVTLRRAGLITETEFLSATARAIQNLQNTPGR
                     LEQSVEDSSFDTWIKFYRQDENSVNSQVSYYDKGAILGLLLDLEIRKRSNGAKSLDDV
                     MRYLYAEFFKKERNYTPTDFQKASELMAGASLEEFFAKYIRNTEELDYNSALAAAGLR
                     LDTGALMTDAGKPIERVFFGADLTQDEDRLIVRRVYAGSPADEQGLNAGDQIVAMDNM
                     RVTRDFFNARIAEKKPGDMINLTIFRFDDLSTLLIKLGGRAEGTYRITALPAQTETQK
                     QIYRAWLGPRA"
     gene            2557..3012
                     /gene="trxA"
                     /locus_tag="VGD38_00730"
     CDS             2557..3012
                     /gene="trxA"
                     /locus_tag="VGD38_00730"
                     /inference="COORDINATES: protein motif:HMM:NF012314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEY0726562.1"
                     /translation="MKVVTCSECGANNRVDEAKLANSEAKCGRCGAKLDARAGNGAGS
                     KPTVLTDSSFQQEILNASGPPTLVDFWAPWCGPCRVVGPIVDQLAAESKGRYRIAKLN
                     VDDNPQTASRYQIASIPTMLIFKNGAVIDRIVGAQPKQAIVERLNQAVG"
     gene            3113..3550
                     /locus_tag="VGD38_00735"
     CDS             3113..3550
                     /locus_tag="VGD38_00735"
                     /inference="COORDINATES: protein motif:HMM:NF019301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HEY0726563.1"
                     /translation="MFRKLIATSSTWFTLPIRLALAAVMIAHGAQKVLGSFGGPGFNA
                     FISGNTPFGFMRPAWFWLAAAAFSELVGGLLVGLGFLTRVGAFFIACTMLTAIVGVHL
                     SGGFFASNRGYEYPLTLLAMALALLISGGGQASIDKGLSGGRR"
     gene            3565..4818
                     /locus_tag="VGD38_00740"
     CDS             3565..4818
                     /locus_tag="VGD38_00740"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY0726564.1"
                     /translation="MNRSPLIIIFTTVFIDLVGFGIVIPVLPFYAEGTIFNATPRTVG
                     ILFASYSVMQLIFSPILGGLSDKHGRRPVLFLSIIGTGIGFLILGLADSIWMLFAGRI
                     LDGITGGNISTAQAYIADITTSENRAKGMGLIGAAFGLGFIFGPAIGGILSRWGIHVP
                     FLFAAALCFANSILLYFRLPETITPDHPARNKAARGRGLTQLINSLKQPRLAFVLTIY
                     FLFIVAFSIMTSTFSFYTMFRFGYDAQHTGYLFAYVGIIAVIIQGGLIGRLVKRFGEL
                     PLVIVGALCFAISLFAVPFVGPAAGGLAALLIGGGVFSMGNSLATPALNSLASKSVGP
                     AEQGIVLGVMQSVASLARAVGPLVQAVLIGTAVAHMGADGLPHYMSDRSLFVTFWTGA
                     AIMFVAFILAFYFSRIDHPTSQTAQ"
     gene            complement(4796..5953)
                     /locus_tag="VGD38_00745"
     CDS             complement(4796..5953)
                     /locus_tag="VGD38_00745"
                     /inference="COORDINATES: protein motif:HMM:NF025115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3298 domain-containing protein"
                     /protein_id="HEY0726565.1"
                     /translation="MKIGALALVLVVGIGVAVGCRRASAPPPSAPSTSAAPGLPVVEV
                     PGGAVPAPETKYFKGSIGTTLDLQMKLVRTGDQINGSYFYQRIGTRINLRGKIAPDGN
                     FTLDEFDQAGKQTGVFQGVWGVNAQDGLATLSGFWSKSEEKSFEKKTPFSVHEEPIAL
                     TGEVEIVSKQIKESNKKLMYEIAAQYPQLSGGSNPNFEKFNQLVRGSVMKKVSGFKKD
                     MAPEEGEEPRPEGSMGSDLSIAYKVALAQDDLISVQFDVGSYYQGAAHPNSYTEVINY
                     DLKNGRQLKLSDLFKPGAKFLQPIASYCIADLKKQRATGAALTDSEIDSGAAPTAKNY
                     ESWTITRKGLGINFDAYQVGPYAAGPQFVMVPYAVVKDVINPEGPIAQFAK"
     gene            complement(5950..6534)
                     /locus_tag="VGD38_00750"
     CDS             complement(5950..6534)
                     /locus_tag="VGD38_00750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726566.1"
                     /translation="MGVAKLTDENTVVPESKYARVERERRYLLQDLPEGLTRADPHLQ
                     ITDNYITGTRLRLRKVREPRSNKWTVKFTQKFAPNPDDLSRTIITNTYLNALEAETMS
                     VFDSNEIRKNRYYFEFEGRRFAIDMFLGDLFGLVLAETSFNNDEELENFPKPIFALAE
                     VTNDPVFAGGSLAERTFAEVREHILSHGLVRKAG"
     gene            complement(6536..>7286)
                     /locus_tag="VGD38_00755"
     CDS             complement(6536..>7286)
                     /locus_tag="VGD38_00755"
                     /inference="COORDINATES: protein motif:HMM:NF022588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2911 domain-containing protein"
                     /protein_id="HEY0726567.1"
                     /translation="LPEQKAQGEATLDDQNERPKGAPIVPWGHMWRTGANEATQFVVT
                     DDVLINGQKLAAGTYSLHTVPNKTEWTIVFNGTANQWGSFNYDPAKDTLRVKAKPETL
                     PASQEWLSFSIDPVTEDSAQVNIRWEKISVPFTVKVPDVGALTLTKLKTAVGEAKPDD
                     WRTPMQAGMYLINNSNTADDQQGLAWLDQSIKVKETFQNLANKANALYKLGRKEEAFA
                     LADQAIQKGKADKVDTTNFEKRVADMKAGKI"
BASE COUNT         1393 a         2199 c         2001 g         1693 t
ORIGIN      
        1 gacttcggtc aactttcctt cgagatgtgc cgacggcacc acgtggttgc acaaaccgag
       61 ccgtcccgct tccgccgagt cgattatttc gcccgttaat atcagctcgc gagcgcgttt
      121 ctcgccgatc acgagcggca aaagcaccgc ggcaacgggc ggaaacacgc cgagcttgat
      181 ctccggttga ccaaaacgcg cacgatccga agcgatcacg atgtcgcacg cagcgacgag
      241 ttcgcaaccg ccgccgagcg cggcgccatc gaccaccgcg atcgtcggct tcgcaatctg
      301 ttcgagctgc cggaagatcg agtggaacga gtcgagcatc tggtagatcg tctcctcgac
      361 gtgctcttca atcgcaactc ccgcactaaa cgcacggcac gacttgtccg cgtcaaaaac
      421 aatcgccacg acttcacgct gcgccgactc gaccaatgcc gccgcaatct cgcgcatcat
      481 cgcgatatga aaaacgttca gcggcgggcg cgcgagagtg atgcgcgcga cacgatcttc
      541 gattctgaaa ttgatgttcg tcatgctcgt ggtcccaacc acgctcgata gatctgcttc
      601 tgcgtttcgg tttgcgccgg caacgccgtg atgcgatacg ttccttccgc gcgcccgccc
      661 aatttgatca gcaacgtgct caggtcgtcg aaacgaaaga tcgtcaggtt gatcatatcg
      721 cccggcttct tttccgcgat gcgcgcgttg aagaaatcgc gcgtcacgcg catgttgtcc
      781 atcgccacga tctgatcgcc ggcgttgagt ccctgttcgt ccgcaggcga accggcatac
      841 acgcgccgca cgatcaatcg atcttcgtct tgcgtaaggt ccgctccgaa aaacactcgt
      901 tcgatcggct taccggcgtc ggtcatcaac gcgccggtgt cgagtcgcag acccgcggcg
      961 gccagcgctg agttgtaatc cagctcttcg gtgttgcgga tgtacttcgc aaaaaactct
     1021 tccaagctcg caccggccat cagctcgctc gccttctgaa aatcagtcgg cgtgtagttg
     1081 cgttccttct tgaaaaactc ggcgtaaaga taccgcatca cgtcgtcgag cgacttcgcg
     1141 ccgttgctgc gcttgcgaat ctcgagatcg agcagcagcc cgagaatcgc gcccttgtcg
     1201 taatacgaca cctgcgagtt taccgaattc tcgtcctggc ggtagaactt tatccacgtg
     1261 tcaaaactgg aatcttcaac gctttgttcc aatcgtcccg gcgtgttttg caggttctga
     1321 atcgcgcgag cggtcgcgga gagaaactcg gtttcagtga tcaagccggc gcggcgcagc
     1381 gtgacgtcgg cgtagtaatc tgtaatgcct tcggcgaccc acagcagttt cgtgtagttc
     1441 tcctgcgtgt agtcgaatgg accaagcgcg tcggggcgga ttcgcttcac gttccagagg
     1501 tgaaagaatt cgtgcgagac gagcgacaga aagccgcgat agtcgggctc ggcacgatcg
     1561 cccgcgtttg gcgcggcgga agtcgagcga tcgccgctcc tgatgcgaaa gccgaaacgc
     1621 gggtaaccga gcgcggttga gttggcgtgt tcgagtccgc caccggcgtt gttgcgcaaa
     1681 tgaagaatga acgtgtagtc gcgatacggg atctcgccgc ccatcagctc gacctgcgtc
     1741 tcgacgatct tctgcacgtc gcggcgcatg cgctccggat cgtaattgcc ttcgccgtcg
     1801 atcacgatgc ggtgcggcac gcctttcacg ttgaataata ttgatttgaa gttgctggcc
     1861 tcgaacggcg agtcgtaaag cacgtcgaag ttttccgcgc gaaacgtgtt gcgctgaccg
     1921 gccacgccgg gaagacccgt tgcgactttc cacacgtccg gcgtcagcac gcgaactgtt
     1981 gacggacttt tgagaaagcc gtcgagatac atcagcaggt ttgcgttgtt ccagaacgcg
     2041 tgattcgagt ttagctcgct ggttcgtact gaaagttcgt tcgcgtagac ctggtatctt
     2101 gcatgccact cgcgcgcgcc gccggtggtg atgcgccagg tgttcttgtt ggtcttttcc
     2161 catttgagcg gctggccgcc ggcgtcgacc gcggagaagt cctgcacctg acgctgaaac
     2221 tcgcgaatga gatatgatcc cggagtccag accggcatca cgagctgttc cgtcgcgggc
     2281 accgcggctg ttggaccacg cttgatcgcg acgtcgattt cgaacaggtg cgtgtgcggc
     2341 cgcggcatgg cgatcgtgaa cgcgatctcg ggtgcggctg agtgtgtcgt ttgcgcggct
     2401 gcgacgtttg tgaaaagaaa aagcaggaga gtcaataacg cgccgctgaa aagtggaccc
     2461 ttatgcatgc gggaatgtta ctagattttg caaaactttt gcgacttcta gcccgtctaa
     2521 tgtcgccaaa tggctctcac atgaggggtg aaaaatatga aagttgtaac gtgttcagaa
     2581 tgcggcgcca acaaccgggt cgatgaagct aaactcgcga acagcgaagc gaaatgtggc
     2641 cgctgcggcg caaaactcga cgcgcgggcg ggtaacggcg ccggcagcaa gcccactgta
     2701 cttaccgact catcgtttca acaggaaatt ctcaacgcgt caggcccgcc cacactcgtc
     2761 gatttctggg cgccgtggtg cggcccgtgc cgcgtcgtcg gcccgatcgt ggaccagctc
     2821 gccgctgaat caaaggggcg ttatcgcatt gcgaaactga acgtcgacga caacccgcaa
     2881 acggcgtcac gctaccagat cgccagcata cccacgatgc tgatcttcaa aaacggcgcc
     2941 gtgatcgatc ggattgtcgg cgcacagccg aaacaggcaa tcgtcgagcg cttgaaccag
     3001 gcggtcggct aaaaatgatt cacgctcgcg tgcgtgaggt tgccggcgag ttgaagtctg
     3061 ttactatctt gccgctctat aaaaaactca gcggtatgaa gaggctacag tcatgtttcg
     3121 taaactgatc gccacttcct cgacgtggtt cactctgcca atccgcctgg cgctcgcggc
     3181 cgtgatgatc gcgcacggcg cgcaaaaagt gctcggcagt tttggtggtc caggtttcaa
     3241 tgctttcatc tccggcaaca cacctttcgg tttcatgcgc cccgcgtggt tctggctcgc
     3301 cgccgcggcg ttctcggaac ttgtcggcgg cctgctcgtc gggctcggat ttctcacgcg
     3361 cgtcggcgcg ttctttatcg cttgcacgat gctcacggca atagtcggcg tgcatttgtc
     3421 aggtggcttc ttcgcgtcca atcgcggcta tgaatacccg ctgactttgc tggcgatggc
     3481 gctcgcgttg ctgatctcgg gcggcggaca ggcttcgatc gacaagggct tgagcggagg
     3541 acgacggtag ccccaaggtc acggatgaac cgctcgcccc tcatcatcat cttcaccacc
     3601 gtgttcatcg atctcgtcgg cttcgggatc gtgattccgg tgttgccgtt ttacgcggaa
     3661 ggcacgatct tcaacgccac gccgcgcacg gtcggcatcc tcttcgcttc gtattcagtg
     3721 atgcaactga tcttctcgcc gatcctcggc ggcttgtcag acaaacacgg acgccgtccc
     3781 gtgctctttc tttcgatcat cggcaccggc atcggctttc tgatcctcgg cctcgccgac
     3841 tcaatctgga tgctcttcgc cggcagaatt ctcgacggca taaccggcgg caacatctcg
     3901 acagcgcaag cctacatcgc cgacatcacc accagcgaaa atcgcgcgaa aggtatgggc
     3961 ctgatcggcg cggcgttcgg tctcggcttc atttttggac cagccatcgg cggcatcctg
     4021 agccgctggg gaattcacgt tccgtttctt ttcgcggccg cgctttgttt tgccaactcg
     4081 atcctgctct atttccgttt accggagacg atcacgcccg atcacccggc gagaaataaa
     4141 gccgcacgcg gacgcggact gacgcaactg atcaattcac tcaagcaacc gcggctcgcg
     4201 tttgttttga cgatctactt tctcttcatc gtcgcgtttt cgatcatgac gtcgacgttc
     4261 tcgttctaca cgatgtttcg cttcggctac gacgcgcaac acacgggtta cttattcgct
     4321 tacgtcggca tcatcgcggt gatcattcag ggcgggctga ttggccggtt ggtgaaacgg
     4381 tttggcgagt tgccgctcgt gatcgtcggc gcgctctgtt tcgcgatcag tctgtttgcg
     4441 gtgccgtttg tcggtccggc agcgggtggg ctggccgctt tattgatcgg cggcggcgtg
     4501 ttctcgatgg gaaactcgct cgcgacaccg gcgctcaaca gtctggcttc gaagagcgtt
     4561 ggtccggctg aacaaggaat cgttttgggc gtgatgcaat cagtggcgag tctggcgcgt
     4621 gctgtcggac cgttggtaca ggcggttctg atcggtacgg ccgtggccca catgggcgcc
     4681 gacggcttac cacattacat gagcgaccgt tcgctgttcg tcacgttctg gaccggcgcc
     4741 gcgatcatgt tcgtggcatt cattctcgcg ttctacttct cacggatcga ccatcctact
     4801 tcgcaaactg cgcaatagga ccttccggat tgatcacgtc tttcaccacc gcatacggca
     4861 ccatcacgaa ctgtggacca gcagcgtatg gtccaacctg gtacgcgtcg aagttgatcc
     4921 cgagtccttt gcgagtgatc gtccagctct cgtaattctt tgccgtgggc gccgcgccgc
     4981 tatcgatctc actgtccgtc aacgccgcgc ctgttgctcg ttgcttcttc aggtccgcga
     5041 tgcagtagga cgcgatcggt tgcaggaact tcgcgccggg cttgaacagg tcgctcagct
     5101 tcagttgcct gccgtttttc agatcgtaat tgatgacttc ggtgtaggaa ttcggatgcg
     5161 ccgcgccctg gtaataactc ccgacgtcga actgaacgct gatcagatca tcctgcgcga
     5221 gcgcgacttt gtacgcgatg ctcaagtcgc tgcccatcga tccttccggc cgcggttctt
     5281 cgccctcttc cggcgccatg tctttcttga acccgctcac cttcttcatc actgaaccgc
     5341 gcacaagctg attgaacttc tcgaagtttg gattgctgcc gccgctgagt tgcggatact
     5401 gcgccgcaat ctcatacatc aacttcttgt tgctttcctt gatctgctta gagacgatct
     5461 cgacttcgcc cgtcaaagcg atcggttctt cgtgaaccga aaacggcgtc ttcttctcaa
     5521 acgatttttc ctccgacttg gaccagaacc cggacagcgt cgcgagaccg tcctgagcat
     5581 tgacacccca gacaccctga aacacaccgg tctgtttccc ggcctgatcg aattcgtcga
     5641 gcgtgaagtt gccgtcaggc gcgatcttgc cgcgcaggtt tatacgcgtg ccgatgcgtt
     5701 gatagaagta actgccgttg atttgatcgc ccgtgcgcac gagtttcatc tgcaagtcga
     5761 gcgtcgtgcc aatcgagcct ttgaaatact tcgtttccgg cgccggcact gcaccacccg
     5821 gaacctccac aaccggcaac cccggcgccg ctgaagtaga cggcgcactc ggcggcggcg
     5881 cggaagctct cctgcatccc accgcgaccc caatccctac aaccaacacc aacgctagcg
     5941 caccaatttt catcccgctt ttcttaccaa cccgtgactc agaatgtgtt cacgtacttc
     6001 agcaaacgtc cgttcagcca agcttccacc cgcgaaaaca ggatcgtttg tgacttctgc
     6061 caacgcaaag atcggcttag gaaaattttc cagctcttca tcgttattaa agctggtttc
     6121 ggcgagcact aaaccgaata aatcgccgag aaacatatcg atcgcgaacc ggcgcccctc
     6181 aaactcaaag taatatcgat tcttccgaat ctcattactg tcgaagacgg acatcgtctc
     6241 cgcttcgagc gcgttcagat acgtgttggt aatgatcgtg cgcgacaaat catccgggtt
     6301 cggcgcaaac ttctgcgtga acttcacggt ccacttgttc gaccgcggct cacgcacttt
     6361 gcgcaaccgc aaacgcgttc ccgtaatgta gttgtcggtg atttgaagat gtggatcggc
     6421 gcgggtcaaa ccttcaggca gatcctgcaa cagataacgc ctttcgcgtt caacccgcgc
     6481 gtacttgctc tcagggacga cggtgttttc gtctgtgagt ttagcaacgc ccaaactaga
     6541 tcttcccagc cttcatgtcg gccacgcgct tttcaaagtt cgtcgtgtcg accttgtcag
     6601 ccttaccttt ttgaatcgcc tgatcggcta acgcaaacgc ttcttccttc ctgccgagtt
     6661 tgtacaacgc gttcgccttg ttcgcaaggt tctgaaaagt ctctttcact ttaatcgact
     6721 gatcgagcca cgcgagaccc tgctggtcgt cggccgtgtt gctgttgttg atgagataca
     6781 ttcccgcctg catcggcgtg cgccagtcgt ctggcttcgc ctcaccaaca gcggttttca
     6841 gtttcgtcaa cgtgagcgcg ccgacgtcag gcactttaac cgtgaacgga acgctgatct
     6901 tctcccagcg gatgttgacc tgcgcggaat cctcagtcac cggatcgatg ctaaacgaca
     6961 gccactcctg gctggccgga agcgtttccg gtttcgcttt cacgcgcaac gtgtctttcg
     7021 cgggatcgta gttgaagctg ccccactgat tcgcggtgcc gttgaaaacg atcgtccact
     7081 cggtcttgtt gggaacggtg tggagactgt aagtaccggc ggcaagtttc tgaccattga
     7141 tcagcacgtc gtcagtcacg acgaactgcg tcgcctcgtt agctccggtg cgccacatgt
     7201 ggccccacgg aacaatgggc gcgcctttcg gccgttcgtt ctgatcgtcg agcgtggcct
     7261 cgccctgcgc cttctgttcg ggcagc
//
LOCUS       DASWTX010000048         4627 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_65722, whole genome shotgun sequence.
ACCESSION   DASWTX010000048 DASWTX010000000
VERSION     DASWTX010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4627)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4627)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4627
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65722"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..762)
                     /locus_tag="VGD38_00760"
     CDS             complement(<1..762)
                     /locus_tag="VGD38_00760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726568.1"
                     /translation="MRIFLIILFLWALTPATVRANLSNNDARKAIQTMLGASLPSSAV
                     HVDRVSNGAEGAAEASAEIQAVFRAKQVDGRWRLSEIRTGQDTWEQLEFVAQAVGAQL
                     PQGGCDAPSQFVRRASDTELNVKRARCLVAELLGVTLPSDRVRIRDISSLELPFGSES
                     SALIETLVQVEFRFTRAARGWQVSEFKSGNREWVRLDTLATALNDAKRAAAASDLNTM
                     ASALNDFRRARGSFVVSDKQSVLIDHLNPRYLKRVI"
     gene            complement(772..1143)
                     /locus_tag="VGD38_00765"
     CDS             complement(772..1143)
                     /locus_tag="VGD38_00765"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0726569.1"
                     /translation="MLVADDDPAILRLIATILEKENFTVVTARDGREAYKTLQADPNF
                     TAAILDVVMPHISGPELVRYMKAEERLRKIPVMMMTAEQDPKLSSDSFSAGAVVFLPK
                     PFTTAQLQIMLQMLIGKEPSE"
     gene            complement(1212..2219)
                     /gene="pdxA"
                     /locus_tag="VGD38_00770"
     CDS             complement(1212..2219)
                     /gene="pdxA"
                     /locus_tag="VGD38_00770"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: protein motif:HMM:TIGR00557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050570 - 4-hydroxythreonine-4-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HEY0726570.1"
                     /translation="MPRIGITMGDPAGIGPEVVLKAVAEEEIRRACIPVIIGDAQLLA
                     HTARTLDLQSGYDIVRAEEPFPEHSEPVIYHLDNITGFIEPGIESGAAGKAAGGYIEA
                     AVELCAAGSIDAVATAPINKRALFLGGYSFPGHTEFFAHLTGAEEYAMAFVAGNLRIV
                     LLSTHVPLAEAIRLVERDRIVRRINLTNRELQRWGIEKPRLAVAALNPHGAEGGLFGV
                     EEASEIMPAIDACRRDEINVQGPFSADTVFLRASRGEFDGVIACYHDQAMIPVKCLSF
                     GEAVNVTLGLPFIRTSVDHGTAFDIAGKGLAEHSSMVAAIKLAAELSTRAGESCRPME
                     V"
     gene            complement(2336..2758)
                     /locus_tag="VGD38_00775"
     CDS             complement(2336..2758)
                     /locus_tag="VGD38_00775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726571.1"
                     /translation="MNRKLIRTTLAEVKGKAREVPQPRERSNGSSRASNDSERSGGAE
                     RGSQARAAQHTPVQVKKRVPPPSETNAEIFYYKKQIDAHTPMVLVLLDGEEIEGTIEW
                     YDRGALKVNRKGAPNLLVLKRNIKYIYKADERVEKASA"
     gene            complement(3057..4211)
                     /gene="ftsZ"
                     /locus_tag="VGD38_00780"
     CDS             complement(3057..4211)
                     /gene="ftsZ"
                     /locus_tag="VGD38_00780"
                     /inference="COORDINATES: protein motif:HMM:TIGR00065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEY0726572.1"
                     /translation="MTPDTRQPGTGINIFIDDDPPLTGARIKVIGIGGGGSNAVNRMI
                     EAGIEGIEFLVANTDLQALKRSRAPIKIQLGSRLTKGLGAGADPGVGREAALEDTDKI
                     IEVLEGADMVFVTTGLGGGTGTGAAPIVASLATELDALTVAVVTKPFQFEGRRRMQQA
                     DQGLRELRECVDTVITIPNERLLHTVDRGVSLSDSFRVADDVLRQAVQGISDLITVPG
                     LINLDFADVKSIMQGMGMALMGAGRATGENRAIEATQQAISSPLLEEATIQGAKGVLI
                     NITGGPDLTLFEVNAASSIIRESADDDANIIFGAVIDENLTDEMKITVIATGFDKETS
                     ALGTSAATTVMPAPPPRYVPRPADDLPRPMMANSRVDDLDVPTFIRKKAD"
     gene            complement(4345..>4627)
                     /locus_tag="VGD38_00785"
     CDS             complement(4345..>4627)
                     /locus_tag="VGD38_00785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726573.1"
                     /translation="VVLTGGGALLNGMTEIAEQVFDAPVRLGYPERDRFGGLIEDIQS
                     PAWAAAAGLALLAYRTQAAEIRTGVSRRGSTGKLTHFVSRFKNRFGSIF"
BASE COUNT          997 a         1391 c         1248 g          991 t
ORIGIN      
        1 aatcacgcgc ttcaggtagc gcgggttcag gtgatcgatg aggacggatt gtttgtcaga
       61 tactacaaac gaaccccgcg cgcggcggaa gtcgttcaag gcactcgcca tcgtgttcag
      121 atcagacgcc gcggccgcac gcttcgcgtc gttcaaggcg gtggctaatg tgtcgagacg
      181 aacccactca cgattaccac tcttgaactc tgacacttgc cacccacgtg cggcgcgcgt
      241 aaagcggaac tcaacctgga ccaacgtctc gatcaacgca gacgactccg aaccaaacgg
      301 caactcgagc gatgagatgt ctctgatgcg cacccgatcc gacggcagcg tcacgcccaa
      361 caactccgcc accaaacaac gcgcacgctt cacattcaac tctgtatccg atgcgcggcg
      421 tacaaactgc gacggcgcgt cgcagccacc ttgcggcaac tgagcgccga cagcctgcgc
      481 gacgaactcg agttgttccc acgtatcctg cccggtcctg atctcgctca aacgccaacg
      541 cccgtcgacc tgcttcgctc gaaacactgc ctggatttca gcgcttgctt ccgccgcacc
      601 ttcagcaccg ttgctgacgc gatcgacgtg caccgcgctg ctcggcaacg aagcgccaag
      661 catcgtttgg atcgctttgc gagcgtcgtt gttggagaga ttggcgcgaa cggtcgctgg
      721 cgtgagtgcc caaaggaaga ggattatcag aaagattcgc atcaagagtg tctattcact
      781 cggttctttg ccaatcaaca tctgcaacat gatctgcaac tgcgcagtcg tgaacggctt
      841 cggcaggaac acaaccgcgc ccgcggaaaa actgtcagac gacagcttcg gatcctgctc
      901 cgccgtcatc atcatcaccg gaatttttcg cagccgctcc tccgctttca tataccgaac
      961 caactcaggc cccgagatgt ggggcataac gacgtccaga attgccgcag taaagttcgg
     1021 atctgcctgt aatgtcttgt aggcctcgcg cccgtcgcgc gccgtgacca cggtgaagtt
     1081 ctctttctcg agaatcgtgg caatcagcct gagaattgcc gggtcgtcat ccgcgaccag
     1141 catccggccc cggctcccgg cctctgtatt cgtttgatta tccatgtaag gtccagtctc
     1201 ccactagttg gtcaaacttc catcgggcga caactttctc ctgctctcgt cgaaagctcc
     1261 gcggcgagtt ttatggcggc caccatgctc gagtgttccg caaggccttt ccccgcgatg
     1321 tcaaaagccg tgccgtgatc gactgaagtc cggatgaaag gcagaccgag ggtaacattc
     1381 accgcttcgc caaacgacaa acatttcacc ggaatcatcg cctgatcgtg ataacacgcg
     1441 atcactccgt caaactcgcc acgcgaagcg cgcaggaaaa ctgtatcagc cgagaatggt
     1501 ccctgcacat tgatctcatc gcggcggcac gcatcgatcg ccggcatgat ctccgaagct
     1561 tcttcaactc cgaagagccc gccttcagcg ccgtgaggat tcaacgccgc aacagcgaga
     1621 cgcggtttct cgatccccca acgttgcaat tcacgattcg ttaagttgat ccgccgaact
     1681 atgcgatcgc gttcgacaag cctgatcgct tcggcgagcg gcacgtgagt ggacaacaac
     1741 acgatgcgca ggttacccgc gacgaaagcc atcgcgtact cttcggcgcc cgtgagatgt
     1801 gcaaagaact ccgtgtgccc gggaaaactg taaccgccga gaaacaacgc gcgcttattg
     1861 atcggcgcag tcgcgacagc gtcaatgctt cccgccgcac acaactccac cgccgcctcg
     1921 atgtaaccac cggcagcctt gccggccgcg cccgactcaa ttccgggttc gatgaaaccg
     1981 gtgatgttat cgagatgata gatcaccggt tccgagtgtt ccggaaacgg ttcttctgcg
     2041 cgaacgatgt cgtagccgga ctggagatcg agtgtacgcg cggtgtgagc aagtaactgc
     2101 gcgtcaccaa tgattacggg aatgcaggcg cggcggattt cttcttcggc aacagccttc
     2161 agcaccacct cgggaccaat cccggcaggg tctcccatgg tgatgccgat gcgcggcacc
     2221 actcgcctgg gtcgaggtcc cgggttagtt gagctttggt ctgagtgtcg cattgcttga
     2281 ggcgacggcg cagttgtcca gggacgaaga tatcagggcg aggtctgaac agctcttacg
     2341 cgctggcttt ctcaacgcgc tcgtcggcct tgtagatata cttgatgttc cgcttgagta
     2401 ccagtagatt cggcgcgccc ttgcgattca ctttcaacgc gccacgatcg taccactcga
     2461 tcgtaccttc gatctcttca ccatcaagca gcacgagcac catgggagta tgggcgtcga
     2521 tctgtttctt gtaatagaag atttcggcat tggtttcact gggaggtgga actctctttt
     2581 ttacctggac cggtgtgtgt tgagcagcac gtgcctggct tccacgttcg gcgccaccac
     2641 tgcgttcact atcatttgag gcgcgggaac tcccattcga acgctctctg ggctgcggaa
     2701 cttctcgggc tttgcctttc acttccgcga gtgtagttct gatgagttta cgattcacgt
     2761 gattattacc tccaaaaatc tatgacgcgc cgttaacgcg tcgcgagcca tttatgcgta
     2821 gacactaggg attcgattaa aactctcgca ggctgcggcc catccgagga gaggaacgaa
     2881 catttacccg taatggaaat ttcctgcaag gaatggcgac atgctacaca accggagagg
     2941 aaaaagcaaa ggagaaaact tctttatttt gctattttta ctgcaagaaa tgctgcatct
     3001 gagttatccg tgttccactg cttcagaaaa cagggaacac ggactcccca gaaaactcag
     3061 tcggcctttt tgcggatgaa cgtgggaacg tcgagatcgt caacgcgcga attcgccatc
     3121 atcggacgcg gcaggtcgtc agcgggacgc ggaacgtaac gcggcggcgg cgcgggcatc
     3181 accgttgtcg ctgccgaagt gcccagcgct gaagtctcct tgtcgaagcc ggtggcgatg
     3241 acagtgatct tcatttcgtc ggtgaggttc tcgtcgatca cggcgccgaa gatgatgttt
     3301 gcatcgtcgt cagcagactc gcgaatgatc gaagaagcag cgttgacttc aaacaacgtc
     3361 aagtcaggcc cgccggtgat attgatcaga acgcctttcg ccccttgaat cgtcgcttct
     3421 tccagcaacg gcgacgagat cgcctgctgc gttgcttcga tcgcgcggtt ctcaccagtc
     3481 gcgcggccgg ctcccatcag agccataccc atgccctgca tgatcgactt cacgtccgcg
     3541 aagtcgagat tgatcaaacc gggaacggtg atcagatcgc tgatgccctg cactgcctgg
     3601 cgcaacacgt cgtcggcaac gcgaaacgaa tccgagagtg aaactccacg gtcgacagtg
     3661 tgcagcaatc gctcgttggg gatcgtgatc acggtgtcga cgcactcgcg caactcacgc
     3721 agtccctgat cggcctgctg catgcggcgg cgtccttcga attgaaacgg cttcgtcacc
     3781 acagcgaccg tcaacgcgtc gagctcagtt gcgagcgatg caacgatcgg cgctgcaccg
     3841 gttcccgttc caccaccgag accggtcgtt acgaaaacca tgtcagcgcc ttcgagcact
     3901 tcgatgatct tgtcagtgtc ttcgagcgca gcttcacggc cgacgccggg atcagcgccc
     3961 gcgccgaggc ctttagttaa tctgctgccg agttgaatct tgattggcgc acgcgaacgc
     4021 ttcagcgcct ggagatctgt gttggctacg agaaactcga tgccttcgat gcccgcttcg
     4081 atcatgcgat tgacggcgtt gctgccgcca ccgccgatgc cgatcacttt tatccgcgct
     4141 ccggtgagtg gcggatcgtc atcaatgaag atattaatgc cggttccggg ttgacgagtg
     4201 tccggtgtca tagttatgtc ctctctccca aaacgggatg gcttccaagg ccgcttcctt
     4261 ttatgttggg ctgcgggcgc catcggcatc gatatgttgc ggacaatatc ttgtgcaacc
     4321 ggggcgcaag catacaacaa cttgtcagaa aatactaccg aaacgatttt taaaacgtga
     4381 cacgaagtgc gtcagtttgc ctgtagatcc gcgacgactg acgccggtgc gaatctctgc
     4441 tgcttgagtg cgataggcga gtaacgcaag accggcagcc gcggcccaag cgggactttg
     4501 aatgtcttca atcaacccgc caaagcgatc tcgttcggga tatccaagcc gcacaggcgc
     4561 atcaaacacc tgttcggcga tctcagtcat gccattcaac aacgcgccgc cgccggtgag
     4621 cacaacg
//
LOCUS       DASWTX010000049         1564 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_369059, whole genome shotgun sequence.
ACCESSION   DASWTX010000049 DASWTX010000000
VERSION     DASWTX010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1564
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_369059"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..593
                     /locus_tag="VGD38_00790"
     CDS             <1..593
                     /locus_tag="VGD38_00790"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0726574.1"
                     /translation="RSEPDSIIYMQPTDKELLIACRNGDEPSWNVLVDRYQRLVYAIP
                     RRAGLNEDQAGEVFQQVFVTLFEKMHEINEPERLHAWLVTTARRKTWRLLTKERALQT
                     ANTDEGHTAEEVLATVVDTAPLPDETLMRLEEQHRIRTALAALDPRCQKLLTMLYYRP
                     VPAPYSEIAAAFGTSEGSIGPTRARCLKKLLQLLEQ"
     gene            675..1262
                     /locus_tag="VGD38_00795"
     CDS             675..1262
                     /locus_tag="VGD38_00795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726575.1"
                     /translation="MSIFSPHIPFTTLADVADENSATSDEISEHLSTCSHCSSQLEKI
                     RQTIGLMRSDTIENPPTSFVQDARKIFRSRAASREPSLVRRVVASLSFDSFTAAPAFG
                     LRSQRSGGRQLIYSTETADIELRVSPENEVAGQILGATCEDGKVNLDSESFSASTRLN
                     ELCEFSFGAVPAGTYKISVHLPGLSVDIPKLELGP"
     gene            1277..>1564
                     /locus_tag="VGD38_00800"
     CDS             1277..>1564
                     /locus_tag="VGD38_00800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726576.1"
                     /translation="MDRAELAARLVEADEGERNALLQDHRAALDVQLAYVLKDICLDG
                     WSSNPQRSLAASATLRTISHLKTDPELNALRHWTQGLEALSKGDMAGAIATL"
BASE COUNT          360 a          465 c          433 g          306 t
ORIGIN      
        1 agcggtctga acccgattca atcatctaca tgcaacccac tgacaaagag ttgctaatcg
       61 cctgccgaaa cggcgacgag ccgtcctgga acgtcttagt cgatcgttat cagcgactcg
      121 tttacgcgat cccccggcgc gccggtctca acgaggatca ggcgggcgag gtcttccagc
      181 aagtcttcgt gacgctgttt gaaaagatgc acgaaatcaa cgagcccgaa cggctgcacg
      241 cctggctcgt caccaccgct cgccgtaaga catggcggct gctgacaaaa gaacgcgctc
      301 tgcaaacagc aaacaccgac gaaggacaca cggccgaaga agtgctcgcg accgtggtcg
      361 acaccgcgcc tctaccagac gaaacactga tgcggctgga ggaacaacac cggattcgca
      421 cggcgctcgc cgccctcgat ccgcgctgtc aaaagctcct gaccatgctc tactatcgcc
      481 cggttccggc gccctattca gagatcgccg cggcattcgg aacctcggaa ggcagcatcg
      541 gaccaacgcg cgcacgctgt ctcaaaaagc tattgcaact tctggagcag tgaataggag
      601 gtatttttac cgtgatgggg aggcactgtt tgattggttg atagaaccca ccctccgatg
      661 ggtagaacac cattatgagc atattctcac cgcacattcc ctttacaacg ttggctgacg
      721 tggcggacga aaactccgcg acttccgacg agatatcgga gcatctctcc acctgctcac
      781 attgttcgag tcaattagag aagatccggc agacgatcgg gctgatgagg tccgacacga
      841 tcgaaaaccc gcccacgagt ttcgtgcagg atgcgcgtaa gatttttcgc agccgcgcag
      901 ccagccgcga gccttcgttg gtgaggcgtg tcgtcgcgtc gttgagtttt gacagcttca
      961 ctgctgcgcc cgcgttcgga ctgcgctcgc aaagaagcgg cggcagacag ttgatctatt
     1021 cgaccgaaac tgctgatatt gaactgcgcg tgtcgccgga aaacgaagta gcgggtcaga
     1081 tactcggagc gacttgcgaa gacggcaagg taaacctcga cagcgagagc ttttccgctt
     1141 cgacgagatt gaacgagctt tgcgagtttt ccttcggcgc ggtgcccgcg gggacttaca
     1201 agatctctgt gcatctcccc ggcttgtcgg tagacattcc aaaactcgaa ctcggaccat
     1261 aactggtgat cgatagatgg accgtgcgga acttgcagcg cgtctggtcg aagctgatga
     1321 aggtgaacgg aacgctctgc ttcaggacca tcgcgcggcg ctagacgtac aactcgccta
     1381 cgttctcaaa gacatctgtc tcgacggttg gagcagcaac ccgcagcgct cgttggctgc
     1441 ttcagccacg ctgcgcacga tctctcactt aaaaaccgat cccgaactca acgcccttcg
     1501 ccattggacg cagggcctcg aagcgttgag caaaggcgac atggcgggcg cgatcgcaac
     1561 gctc
//
LOCUS       DASWTX010000050         2030 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_325877, whole genome shotgun sequence.
ACCESSION   DASWTX010000050 DASWTX010000000
VERSION     DASWTX010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325877"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2030)
                     /locus_tag="VGD38_00805"
     CDS             complement(<1..>2030)
                     /locus_tag="VGD38_00805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726577.1"
                     /translation="QCPAGTPKTFTQSSSPATIYTLDPTVDLPFSTTCTVTVVANQIT
                     DQDVSDPPDQMAANFVFSFTTAAEPPVVANNVIINELDSDTAGTDTLEFVELYDGGVG
                     NTSLTGLVVVFFNGSNDLSYRAIDLDGFSTNGAGYFTIGNAAVAGVDLTFPNDTLQNG
                     ADAVALYAANASNFPTNTPITTANLRDAVVYDTNDADDAGLLVLLNAGQPQVDETAAG
                     DSTTASIGRCPNGDGGARNTSTYVARTPTPDGVNNCPPPPVVAAIHDVQGNGAVSPFA
                     GLDVITSGVVTARKSNGFFMQDPVIDADPNTSEGIFVFTGASPSAAVGDAVTVTGTAT
                     EFFTLTQISSNNSNVVIHTSGNPLPAPIVLTTTILNPAGPIDQLERFEGMRMHADTLV
                     SVAPTNEFGETFTVLEGVARPMREPGIEAGLTIPPDPTSGTPDCCIPIWDKNPERIMI
                     DSDGLAGSTVFSVTSNVTISNVTGPLDFTFGDYKVLPETTPSTTANMSAVPVPTPAAG
                     EVTVAGFNIENFNNAATQRRKAALAIRDVLHLPDVIGAIEIFELSGLQALAAEIESIS
                     GVHYEARLIEANGAGGDADQDVGFLVKTSRVQIDSVTQIEQPGCNGTPATCNTFIDPN
                     TGNPALLNDRPPLVLRATVDAATLNPREMIIVVNHTRSFIDIEVVGAEGIRV"
BASE COUNT          389 a          559 c          656 g          426 t
ORIGIN      
        1 gaacgcgtat gccttcggcg cccacaacct cgatgtcgat gaacgaacga gtgtggttca
       61 cgacaatgat catttcacgc gggttcagcg tcgccgcgtc aaccgtcgca cgcagcacga
      121 gcggcggacg atcgttgagc agcgccgggt tgccggtgtt gggatcgatg aacgtgttgc
      181 aggtcgcggg cgtgccgttg cagcccggct gttcgatctg cgtcacgcta tcaatctgga
      241 cgcgcgatgt ttttacgagg aagccaacgt cttgatcggc gtcgccgccg gcgccgttag
      301 cctcgatcaa acgcgcttcg tagtgaacac ccgagatgct ttcgatctcg gcggccaatg
      361 cttgcagtcc gctgagctcg aagatctcga tggcgccgat aacgtcgggc aagtgcagca
      421 cgtcgcgaat cgcgagcgcg gccttgcgac gctgcgtggc ggcgttgttg aagttctcga
      481 tgttgaagcc ggcaacggtg acttctcccg ccgctggtgt cggcacgggc accgcgctca
      541 tgttggccgt ggtgctcggc gttgtttccg gcaacacttt gtagtcgccg aaagtgaaat
      601 cgagtggacc agtgacgttc gagatggtca cgtttgaagt aactgagaaa accgtcgaac
      661 cggccaaacc gtcgctgtcg atcatgatcc gctccgggtt cttgtcccaa atcggaatgc
      721 agcaatcggg cgtgccggaa gtcggatcgg gcgggatagt caaaccggct tcgataccag
      781 gttcgcgcat cggccgcgcg actccctcga ggacggtgaa cgtctcgcca aactcgttgg
      841 tcggcgcgac cgaaacgagc gtgtcggcgt gcatgcgcat gccttcgaag cgctcgagct
      901 gatcgatcgg accagcagga ttgagaatcg tcgtcgtcaa cacgataggc gccggtaacg
      961 gattgccgct cgtgtgaatt actacattgc tgttgttgga agagatctgc gtcagcgtaa
     1021 agaactcggt cgctgtaccg gtgacggtaa cagcatcgcc gacggccgct gacggcgaag
     1081 cgccagtgaa aacaaagata ccttccgacg tgttcgggtc cgcgtcgatc acgggatcct
     1141 gcatgaagaa gccgttcgac ttgcgagccg tgacaacgcc tgaagtgata acgtccagtc
     1201 ctgcgaacgg tgaaacagcg ccgttgccct gaacgtcgtg aatcgcagcg acgacgggtg
     1261 gcggcggaca gttgttgacg ccatccggag ttggcgtgcg ggcaacgtag gtgctcgtgt
     1321 tacgcgcacc gccatcgccg ttcggacaac ggccaatgga agcagtcgtg ctatcgccgg
     1381 ccgcagtttc gtctacctgt ggttggcccg cgttcaggag cactagcaat cccgcgtcgt
     1441 cggcgtcgtt agtgtcgtaa acgactgcgt cgcgcaagtt cgcggtggtg attggtgtgt
     1501 tcgttgggaa gttgctggca ttggccgcgt agagggccac tgcgtctgca ccgttctgca
     1561 acgtgtcgtt cgggaacgtg agatcgacgc ccgctaccgc ggcgttgccg atcgtgaaat
     1621 agcctgcgcc gtttgtgctg aaaccgtcga ggtcgattgc gcggtatgaa agatcgtttg
     1681 aaccgttgaa gaagacgacg acgagaccag tgagcgatgt gttgcccacg ccaccgtcgt
     1741 agagttcgac aaactccaac gtgtccgtgc ccgcagtgtc ggaatcgagc tcgttgatga
     1801 ttacgttgtt agcgacgacc ggcggctcgg ctgcggtcgt aaatgagaag acgaagtttg
     1861 ccgccatctg atccggtgga tcgctgacgt cctgatccgt gatctggttt gcaaccactg
     1921 tgaccgtgca agtggtgctg aacggcaaat caacggtcgg atcgagtgtg tagatcgtcg
     1981 ccggcgaaga gctttgcgtg aaagtcttcg gcgttcctgc cgggcactgg
//
LOCUS       DASWTX010000051         1512 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_347530, whole genome shotgun sequence.
ACCESSION   DASWTX010000051 DASWTX010000000
VERSION     DASWTX010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347530"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..486)
                     /locus_tag="VGD38_00810"
     CDS             complement(<1..486)
                     /locus_tag="VGD38_00810"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY0726578.1"
                     /translation="MSTPNQWRALTLLSIAELLGMALWFSGSAVVPALAREWNLTGSQ
                     VSWLAIAVQLGFVAGTLLSATLNLADIITTRHLFAVSALLGALTNAFFGIYAHQPETA
                     IVLRFLTGVCLAGVYPPGMKLMATWFRERRGMALGVLVGALTLGKATPYLVNAIGSAN
                     WR"
     gene            complement(483..1181)
                     /locus_tag="VGD38_00815"
     CDS             complement(483..1181)
                     /locus_tag="VGD38_00815"
                     /inference="COORDINATES: protein motif:HMM:NF014708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HEY0726579.1"
                     /translation="MITVRRSNERGHFDHGWLNTYHTFSFDQYYDPRYMGFRDLRVIN
                     EDFVAAGRGFPKHGHRDMEIITYILEGALKHEDSMGNGSVIRPGDVQRMSAGTGVRHS
                     EQNASDQERVHLLQIWILPNTVGLDPGYEQKAFSEDERRGKLRLIASEDGREGSVLVH
                     QDVSLFASVLPAGQEVEHTIDPLRYAWIQVARGSVEVNGEKAEHGDGVSAFGESSLRI
                     RATDDAEVLLFDLA"
     gene            complement(1168..>1512)
                     /locus_tag="VGD38_00820"
     CDS             complement(1168..>1512)
                     /locus_tag="VGD38_00820"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0033745 - L-methionine-(R)-S-oxide
                     reductase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEY0726580.1"
                     /translation="GFYFLRGDELVLGPFQGNPACVRIPMGKGVCGVAAQQCETIIVP
                     NVHEFPGHIACDVASNSEIVVPLFDGERLLGVLDLDSPLIGRFDDQDAEGLNELVTVF
                     VGHEEGLINDHG"
BASE COUNT          348 a          491 c          399 g          274 t
ORIGIN      
        1 gcgccagttc gcactgccaa tcgcgttgac gagatacggc gtcgctttgc ccagcgtcag
       61 cgcgccgacc agaacgccga gcgccatccc gcggcgttcg cgaaaccacg tcgccatcag
      121 tttcatccct ggcggataaa caccggcgag acaaacaccg gtcaaaaacc gcagcacgat
      181 cgctgtttca ggttgatgag cgtagatacc aaaaaacgcg ttggtgagtg cgccgagcag
      241 cgcggaaaca gcgaacaggt gccgcgtcgt gatgatgtcg gcgagattga gcgtcgcgct
      301 gagcagtgtg cccgcgacga aaccgagttg gaccgcgatg gccaaccaac taacctgact
      361 gccggtgagg ttccattcac gcgcaagcgc aggcacaacg gccgagccgc tgaaccacag
      421 cgccatgccc aacaattccg cgatggagag aagagttaat gcacgccact ggttcggggt
      481 gctcatgcga gatcaaacaa caacacttcc gcatcgtccg tcgcacgaat tcgcaagctc
      541 gattcaccaa aggcgctcac accgtcgccg tgctccgcct tctcgccgtt aacctcaacc
      601 gagccgcgcg ccacctgaat ccacgcatat cgcaacggat cgatcgtgtg ctcgacttcc
      661 tgtccggccg gcagaacaga cgcaaacaaa ctcacgtcct gatggaccag caccgaacct
      721 tcacggccgt cttcagaagc aatcaaccgc aacttgccgc gccgttcgtc ttcgctgaac
      781 gccttctgct cgtaacctgg gtcgagccca accgtgttcg gcagaatcca gatctgcaac
      841 aggtgtacac gctcctgatc cgacgcattc tgttcgctgt gtctcacacc agtgcccgca
      901 ctcatccgct gcacgtcgcc cggacgaatg accgaaccgt tgcccatgct gtcttcgtgt
      961 ttgagcgcgc cttcgaggat gtaagtgata atctccatgt cgcggtggcc gtgcttcgga
     1021 aatccgcggc cggccgcgac aaagtcttca ttgatcacgc gcaggtcgcg aaagcccatg
     1081 taacgcggat cgtaatactg gtcgaacgag aacgtgtgat acgtgttgag ccaaccgtga
     1141 tcgaaatgcc cgcgctcgtt ggaacgtcta accgtgatca ttgatcaatc cttcttcgtg
     1201 cccgacaaac accgtcacca gttcgttcaa accttccgcg tcctgatcgt cgaacctgcc
     1261 gataagcgga ctgtcgagat cgagcacgcc aagcaaacgc tcgccgtcaa acaacggcac
     1321 gacgatctcg gaatttgacg caacgtcgca cgcgatgtga cccggaaact cgtgcacgtt
     1381 cggcacgatg atggtctcgc actgctgcgc ggcgacaccg caaacacctt tacccatcgg
     1441 aatgcgcacg cacgcgggat ttccctggaa tggaccaagc acgagctcat cgccacgcag
     1501 gaaatagaaa cc
//
LOCUS       DASWTX010000052         1990 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_109156, whole genome shotgun sequence.
ACCESSION   DASWTX010000052 DASWTX010000000
VERSION     DASWTX010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1990)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1990)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1990
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109156"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..899
                     /locus_tag="VGD38_00825"
     CDS             <1..899
                     /locus_tag="VGD38_00825"
                     /inference="COORDINATES: protein motif:HMM:NF024117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEY0726581.1"
                     /translation="FDRVLQLPSADELAVWNNADAPEPPSNLTATLKGAVIHRFCERY
                     TSDQSAEETLRQSFEEVVRLRQAQLADRLIEINFETAIRDLLPLAKNYLASDVFRRVE
                     AAPKVISSGKPTGETGLWSELSFRLRRPLGILYGVIDKLLVTRNHIEIIDFKTNRIRP
                     AKTEEPPPEQPKDTQFSFDFEKTPADRQPAMSAALRTTSEDYELQMQSYALAVRELLP
                     SLADAQIRVTLHFLEPNVEVHLADELLTPAQCRQAIDAAMLRIVSSSEPADFPVKPAP
                     HCRACNFLQLCSAGRDFLSTYS"
     gene            920..>1990
                     /locus_tag="VGD38_00830"
     CDS             920..>1990
                     /locus_tag="VGD38_00830"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEY0726582.1"
                     /translation="MATIQSFDGNEFDGYLALPASGYGPGIVVLQEIFGVDAHMRSIT
                     DWYAAHGFVALCPDLFWRMERGVQLTGAEFDKAIGYYQRLDEAKAVEDSAAAMNVLRQ
                     HPACNGRVGAVGFCLGGNLAYLLSVRFKPDCAVGYYGVSIEKSLAEAKNLTGPLMLHI
                     AGDDKFCPPEAQAQIQEALGGNPLATIHVYPGRDHAFGRPDREHYHAADAELAHLRSL
                     EFLVTHLAGAGLASAQQTLSSRWDDHVKYEFATRNTDDTLETMVADAYVNHVPVMTGG
                     VGHDELREFYSNRFIPQMPADTSMTPVSRTIGVDRVVAEMVFEFTHTIKMDWMLPGIE
                     PTGKHVKVALVVIVHFRDGKLAH"
BASE COUNT          400 a          598 c          585 g          407 t
ORIGIN      
        1 acttcgatcg cgtgctgcaa cttccatcgg ctgacgagct cgcggtttgg aacaacgcgg
       61 acgcgcccga gccgccgtcg aacctgactg cgacgttgaa aggcgcggtg attcatcgct
      121 tctgcgaacg ctacacgtcc gaccagagcg ctgaagaaac tttgcgtcag agttttgaag
      181 aggtcgttcg actgcgccag gcgcaactcg cggatcgcct gatcgagatc aacttcgaaa
      241 cggcgatcag agacctgttg ccgcttgcga aaaactatct cgccagcgac gtcttcaggc
      301 gcgtcgaggc ggcgccgaaa gtcatcagct ccgggaagcc gacgggtgaa accggtttgt
      361 ggagtgaatt gagttttcgt ctgcggcggc cgttggggat tctctacggc gtcatcgaca
      421 agcttctcgt cacacgcaat cacatcgaaa tcatcgactt caaaactaat cgtatccgtc
      481 ccgcgaaaac cgaagagccg ccgccagagc agccaaagga cacgcagttt tctttcgact
      541 tcgaaaagac accggccgat cgccagcctg cgatgagcgc tgcgttgcgc acgacctccg
      601 aagactacga actgcaaatg caatcctacg cgctcgcggt gcgcgaactt cttccgtcgc
      661 tcgcggacgc gcagattcgc gtcacgcttc acttcctcga acccaacgtc gaggtccatc
      721 tcgccgacga actactcacg cccgcgcaat gccggcaagc gatcgacgca gcgatgttgc
      781 gcatcgtctc gtcttccgag ccggccgatt ttccggtgaa gcccgcgcca cactgccgcg
      841 cctgcaactt cctccaactc tgctccgccg gacgcgattt cttgtcgacg tactcttgat
      901 ctgtgtaatc tgtggcccca tggcgacaat acaatcgttt gacggcaacg agttcgacgg
      961 ctatctcgcg ctgcccgcga gcggctatgg accaggcatc gtcgtgttgc aggagatctt
     1021 cggcgtcgac gcgcacatgc gcagcatcac ggattggtat gccgcgcacg ggttcgtcgc
     1081 gctctgtccc gatctgttct ggcgtatgga acgcggtgtt cagttgaccg gcgctgagtt
     1141 tgataaagcg atcggttatt accagcgact cgacgaagcg aaggctgtcg aggattcagc
     1201 ggcggcgatg aacgtcttgc gacagcatcc cgcgtgcaac ggacgtgtcg gcgcggttgg
     1261 tttttgtctc ggcggcaatc tcgcgtatct gttgtcggtg agatttaaac ccgattgcgc
     1321 ggtcggatat tacggcgtga gcatcgagaa gtcgctcgcc gaagcaaaga acctcacggg
     1381 cccgttgatg ctgcacatcg cgggcgacga caagttttgt ccgcccgaag cgcaggcgca
     1441 gattcaagaa gctctcggcg ggaatccact ggccacgatc cacgtttacc cgggacgcga
     1501 tcacgctttc ggccggccag accgcgagca ctaccacgcc gctgatgctg agctcgcgca
     1561 cctgcgcagt cttgagtttc tggtgacgca ccttgccggc gcgggtctcg cgagtgcgca
     1621 gcaaacactc tcgtcgcgct gggacgatca cgtgaagtac gagttcgcca cgcgcaacac
     1681 tgacgacacg ctcgagacga tggtcgcgga tgcttacgtg aatcacgtgc cggtgatgac
     1741 gggcggcgtc ggtcacgatg agctgcgtga gttttactca aatcggttca ttccgcagat
     1801 gccggcggat acgagcatga cgcccgtgtc gcgcacgatc ggcgtcgatc gagttgttgc
     1861 cgagatggtt tttgagttca cgcacacaat caagatggac tggatgcttc cgggtattga
     1921 accgaccgga aaacacgtca aggtcgcgtt agtcgtgatc gttcatttcc gagacggcaa
     1981 actggcgcac
//
LOCUS       DASWTX010000053         6982 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_22375, whole genome shotgun sequence.
ACCESSION   DASWTX010000053 DASWTX010000000
VERSION     DASWTX010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6982)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6982)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6982
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22375"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(33..467)
                     /locus_tag="VGD38_00835"
     CDS             complement(33..467)
                     /locus_tag="VGD38_00835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726583.1"
                     /translation="MAARKGSKKSKGARKGAGKGTKKRAGKKPARGGAKKAAKKSTKK
                     SAKKSTKKSAKKAGKKGGARKTTKKAAKSTKKSGKKAGGKGTKKASKKRSTRSTSAPE
                     LAAEMESESSAVEEASGESEGGGGGEMGVGGGEDNASLGEEE"
     gene            674..1147
                     /locus_tag="VGD38_00840"
     CDS             674..1147
                     /locus_tag="VGD38_00840"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0726584.1"
                     /translation="MSPLFQPAVYYFSQFVPNQSNHAGEFAPSAQKTDREARSRRSAL
                     VVDDVADVTEMLAVVLTHAGYNVVTAGSAPAALKAARERQFDVIISDIGMPDMNGYQL
                     AREVRQLPGYQTVPMVAVTGYSMFDDKERSSNAGFNAHMTKPIDPRALLDLIEQL"
     gene            1399..2760
                     /locus_tag="VGD38_00845"
     CDS             1399..2760
                     /locus_tag="VGD38_00845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726585.1"
                     /translation="MQIPFASFRDPRIGAKIGSIVFASLAVLSCYWLLLRYRVRYALV
                     WLLALLACSAPFLFRLNMAKAPPLSIIYLVIAIHLFFQRKYWPLLPVALLFTWTYDLF
                     LLLIMATVFWVVAIAWTERRFEWRPLVWVIIGCAAGLVINPYFPQNFHQLWEHMRTKL
                     VPDEYVTKVGHEWYPYNSWEFLGNSAVACIAMVLGYIAFNPGDRRNAQHPLFLLLLST
                     ALMIMTARWKRSVEYWPPFAVLFAGFALKPWLDGARGYLTRLPPDILEELKPFFDNED
                     SWWRRLTSDVREILATVAVAFVALVLGVFLFFNLRSTVYEIGRSSRHSYYKAGAEWMR
                     ANIPPGQLIFNTDWDDFPRLYYFDETHYYVSGLDPSYLYDKNPKLSQLYDRITLGQER
                     DPGPLIRDRFGARYVFSDNEHDDFFQHARDSGWFDIVYEDADCVILYIRDEKLEPELN
                     EPF"
     gene            2808..3155
                     /locus_tag="VGD38_00850"
     CDS             2808..3155
                     /locus_tag="VGD38_00850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726586.1"
                     /translation="MAGCNGTPPAPSANSTPEPSPTAAASPTAPLTGFAKDLQYVRNG
                     GYTYIWVFSRKDGKPLDREDGVFLRTNAPQVVDWVTTEEGRKVIAGTNFNLEEGNLGL
                     LKKRFVTEDFSAR"
     gene            complement(3152..4141)
                     /locus_tag="VGD38_00855"
     CDS             complement(3152..4141)
                     /locus_tag="VGD38_00855"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEY0726587.1"
                     /translation="MLEYAEVADPQIRANEALVEVRGCALNHLDIFVRRGMPGIEIPL
                     PHILGCDVSGVVREVGELVTWVKPGDEVMVQPGVSCGHCEACLSGDDNLCREYDMIGY
                     RRDGGYAELVAVPGVNLIPKPSQLSWEEAAALPLVTVTAWHMLVTRANVQPGENVLVH
                     AAGSGVGSVAIQLAKLRGARVLTTASTDEKLAKARELGADVTINYTQEDWPKEVRRLT
                     DRKGVDVVVEHTGAETWPGSISSLKNNGRLVTCGATSGFDARTDLRQVFYRHLTLLGS
                     FMGSKAELLEAMKFVRDGKIRGVVDRVLPLSEARQAHELIEDRAQFGKIVLKN"
     gene            complement(4260..5234)
                     /gene="lipA"
                     /locus_tag="VGD38_00860"
     CDS             complement(4260..5234)
                     /gene="lipA"
                     /locus_tag="VGD38_00860"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR00510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HEY0726588.1"
                     /translation="MAGLPHTGLGRSHSVESRSEVNQLARELRVISNNQKIRQPKPEW
                     LRIRLGDPTNQNNVLQLIEGLNLHTVCQEARCPNIFECWSDRTATFMLGGDICTRHCG
                     FCAVGKGQPGSLDAEEPRHVAEAVAHLNLAHTVITSVNRDDLPDGGAAHWAQTIREVR
                     AMNPECKIEVLIPDFNGDEAALNTVLDAQPDVLNHNTETIARLYRRVRPDAVYEQSLT
                     LLQRAAARRDLEDSGMLTKSGIMVGLGETFAEVVELMKDLRAVSCDIMTIGQYLQPHA
                     RRLPVERYVTPEEFAEWREIGMSLGFRHVESSPLTRSSYHAREQAADR"
     gene            5390..5851
                     /locus_tag="VGD38_00865"
     CDS             5390..5851
                     /locus_tag="VGD38_00865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726589.1"
                     /translation="MPDGRAWTARLQLTQSDLKELRAAMDAADGQAGVAASIAQSPTR
                     TIVAGMLLFLSVSFAGVWLARSASAGRARKAIVAGIVVVAVIGAAAIITQGNVGPPPG
                     YYSWMKLSKNFAQGRATSGDLVIEIVPDEPNRTPGVKLLIPHNPKQSGDEE"
     gene            5956..6867
                     /locus_tag="VGD38_00870"
     CDS             5956..6867
                     /locus_tag="VGD38_00870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726590.1"
                     /translation="MCLLGAAVLATLLPLQVSIVTVFLFAGPQNWFEFRYFLMRLPVR
                     FGKSRNFFVTAFAGIGVLTITYVSLPFFYQSVAWANETWLVVLASWNTLLLAWLAVLI
                     RLRAKQKRGVDWAWATPVLLALAALNWLGPEFFSLAIVYTHPLVALWFLDRQLKRTRP
                     EWLAAYRRCLLLLPVILGAMIWSLSQTSPLSDDNGLFWRITQHSGAQLLPQVSSHMLV
                     SVHLFLEMLHYAVWIVALPLVGRGFWRFKASEKRLPRTALLAVGLVGVVILWLGFATN
                     YTDTRDLYFTIAIAHVLAEAPFLLKTL"
BASE COUNT         1302 a         2026 c         1975 g         1679 t
ORIGIN      
        1 ggcaagcgaa acggcgcact ccactttcga aactactctt cttctccgag actagcgttg
       61 tcttcgccac caccaacgcc catctcaccg ccgccgccgc cttcactttc acctgaggct
      121 tcttcaactg cggaactctc cgactccatc tcggccgcga gctccggggc gctggtggac
      181 cgtgtggatc gtttcttcga agccttcttg gtacccttgc cgcctgcttt ctttccggat
      241 ttcttggtgc tctttgcagc tttcttcgta gtcttgcggg cgccgccttt cttgccggct
      301 ttcttagcgg acttcttggt cgatttcttc gctgatttct tggtcgactt cttcgccgcc
      361 ttcttcgctc cgccacgcgc tggcttcttg ccggctcgct tctttgttcc tttgccggcg
      421 cctttgcgcg cacctttaga ctttttcgat ccttttctag ctgccatttt gttcgctcct
      481 tctgttggtc tgggtttggc ctcaccgtag caaaataatt aaagactgtc cacgatgttt
      541 tcatgtgtga gtattcgatc gaatctatag acacgcatcg gctctttcag ctacagtaaa
      601 cccgctctcc acacaattcc gatcggcttg tagcgtggga aggcctggga tgcgagatca
      661 ctattcatcg cgtgtgagtc ctctttttca gcccgctgtt tattacttca gccagtttgt
      721 acccaatcag tcgaaccatg ccggcgagtt cgctccgagt gctcagaaaa cggatcgcga
      781 agcacgctcg cggaggtctg ctttagtagt cgacgacgtg gcggatgtaa cggaaatgct
      841 ggcagtggtg ttgactcatg cgggttacaa cgtagtgacg gcgggttccg cacccgcggc
      901 tttgaaagca gcacgcgaac ggcagtttga cgtgattatc tccgacatcg gcatgccgga
      961 catgaacggt taccagttgg cgcgcgaagt cagacagttg ccgggttacc aaaccgtgcc
     1021 gatggttgcg gtgacgggct attcgatgtt tgacgataaa gaacgatcga gcaatgcggg
     1081 gtttaacgcc cacatgacca agccaatcga tccgcgcgcg ttactcgatc tgatcgaaca
     1141 actgtgaatc ggcccagatt cgtaactgtt atccagtttg taatcggtgc tgtcgcaatc
     1201 gcagtcgttt tttggcaact tcaattttcc accaactcaa tctgctgcgg ggattacgac
     1261 ggctattacc acatcaaatg gagccgcgcg ctgtgggaat cgattaaagc cggatcattt
     1321 ccgcccgagt ttccctggct tccactcacg acattaaatc caaaacagta cgtcgaccac
     1381 catctgcttt ttcacatcat gcagatcccg tttgcgtcgt ttcgcgatcc gcgaatcggc
     1441 gcgaagatcg gctcgatcgt ctttgcgagc ctggcggtgc tttcgtgtta ctggctgctg
     1501 cttcgctacc gcgtgcgcta cgcgcttgtg tggctgctcg cgctgctcgc ctgttccgcg
     1561 ccgtttctgt ttcgcctgaa catggcgaag gcgccgccgc tgtcgatcat ttacctcgtc
     1621 atcgcgattc acctgttttt tcaacgcaaa tactggccgc tgctgccggt cgcgctgctg
     1681 tttacgtgga cctacgacct gttcctgctg ctcataatgg cgacggtgtt ttgggtcgta
     1741 gcaatcgcgt ggaccgagcg gcgttttgaa tggcgcccgc tggtttgggt aattatcggc
     1801 tgcgcggccg gactcgttat caatccgtac tttccgcaaa actttcatca gctttgggag
     1861 cacatgagga ccaagctggt gccggatgaa tacgtcacca aagtcggaca cgagtggtac
     1921 ccgtacaatt cgtgggagtt tttgggaaac tcggcagtgg cgtgtatcgc gatggtcctg
     1981 ggttacatcg ccttcaatcc gggcgaccgg cgcaatgccc agcacccgct gtttctcctg
     2041 cttctttcga cagcgctgat gatcatgacc gcgcgttgga aacgaagcgt ggaatactgg
     2101 ccgccgtttg cggtgctgtt cgccggtttt gcgttgaaac cgtggctcga cggcgcgcgt
     2161 ggttacctga cgcgtctgcc gccggacata ttggaggagt tgaaaccgtt ttttgataac
     2221 gaagattcgt ggtggcgcag actcacgagt gacgttcgcg aaatattggc aaccgtagct
     2281 gtcgcctttg tggcgctcgt gctcggcgtg tttctctttt tcaacctgcg cagcacggtt
     2341 tacgagatcg gccggagctc acgacacagt tattacaaag cgggggccga gtggatgcgg
     2401 gccaacattc cgcccgggca gttaatcttc aacaccgact gggacgactt ccctcgcctc
     2461 tactacttcg acgagacgca ttactacgtc tcaggcctcg atccgagtta tctttacgac
     2521 aagaatccca agctctcgca gctttacgat cggattacgc tgggccagga acgagacccg
     2581 gggccgctga ttcgcgatcg cttcggcgcg cggtatgttt tctccgataa tgagcacgac
     2641 gacttcttcc agcatgcgcg tgacagcggt tggtttgata ttgtctatga ggatgctgac
     2701 tgcgtgatcc tgtatattcg ggacgagaag cttgagcctg aactgaacga gccgttttga
     2761 ttatgaagtt aagtcgacga ttgatgttac tcacgttttt atgtgtgatg gctgggtgca
     2821 acgggacgcc gccggctccc agcgcaaact ccacacccga accgtcgcca acagccgcgg
     2881 cttcacccac agcgccgttg accggttttg caaaagacct ccagtacgtt cgcaacggcg
     2941 gctacaccta catctgggta ttctcgcgta aggatggaaa accgctcgat cgggaagacg
     3001 gcgtttttct tcgtaccaac gcgccgcagg ttgtcgactg ggtaacaaca gaggaaggcc
     3061 ggaaagtgat cgccggaacg aacttcaatc tcgaggaagg aaacctcggg ctcttgaaga
     3121 aacgctttgt aaccgaggat ttttcagccc gttaattctt tagaacgatc tttccaaact
     3181 gcgcgcgatc ctcgattaac tcgtgcgcct gacgcgcctc gctgagcggc aacacccgat
     3241 cgaccacgcc acgaatcttt ccgtcccgca caaacttcat cgcttccaac agctctgcct
     3301 tcgaacccat aaacgatccc aacaacgtca ggtgacgata aaagacctgc cgtagatcgg
     3361 tacgcgcgtc gaaaccgctc gttgcgccgc acgtaacgag ccggccgttg tttttaagtg
     3421 aactgatcga accaggccac gtctcggcgc cggtgtgctc gacgacaacg tcgacgcctt
     3481 tccgatcggt gaggcgtctg acttccttgg gccagtcttc ctgcgtgtag ttgatcgtga
     3541 cgtcggcgcc gagctcgcgt gccttggcga gtttctcatc cgtgctcgcg gtcgtgagca
     3601 cgcgcgcgcc ccgcagcttg gcgagctgaa tcgcgactga accaacaccg ctgccggcag
     3661 cgtgaacgag gacgttctca cccggctgca cgttcgcgcg cgtgacgagc atgtgccacg
     3721 cagtgacggt cacgagcggc aaagccgcgg cttcttccca gctcaactgc gatggcttcg
     3781 gaatgaggtt cacacccgga acagcaacca gctccgcgta accaccatcg cggcgatatc
     3841 cgatcatgtc gtactcgcgg cagagattgt cgtcgccgct gagacacgcc tcgcaatgtc
     3901 cgcacgaaac tcccggctgg accatcacct cgtcacccgg cttcacccac gtgaccagct
     3961 cgccaacctc gcgcacgaca ccgctgacgt cgcagccgag aatgtgcggc aacggaatct
     4021 cgatcccggg cataccgcgc cgcacaaaaa tgtcgaggtg attcagcgcg cagcctctca
     4081 cctcgaccaa tgcctcattc gcccgaatct gcggatcagc tacctccgcg tactcgagca
     4141 cctccggccc accgtgttgt ctgaaaatgg aagctttcac gaagccagac taaacgttcc
     4201 atcgcttctt ttcaaagcgc gaatgcctgc ccggcgtcct cgtattcccg gaccagtttc
     4261 tatcggtcgg cagcttgctc gcgtgcgtga tacgaggaac gtgtgagcgg gctcgattcg
     4321 acgtgacgaa aaccgagcga cattccgatc tcgcgccact ccgcaaactc ttccggtgtg
     4381 acgtaacgct cgaccggtaa acgacgggcg tgtggttgga gatactgtcc gatcgtcatg
     4441 atgtcgcacg acacggcgcg caagtctttc atcagctcga cgacttccgc aaacgtttca
     4501 ccaagaccaa ccatgatgcc gctcttggtt aacattccgc tgtcttcgag atcgcgacgc
     4561 gcggccgcac gctgcaagag tgtgagtgac tgttcgtaaa cagcatcggg ccggacgcgt
     4621 cgatagagcc gcgcgatcgt ttccgtgttg tggttgagca cgtcgggttg cgcgtcgagc
     4681 actgtgttca gcgctgcttc gtcgccgttg aaatccggga tcagcacttc gatcttgcac
     4741 tcgggattca tagcgcgcac ttcgcgaatc gtttgcgccc agtgcgcggc gccgccgtcg
     4801 ggcaggtcgt cgcgattcac ggaagtgatc actgtgtggg cgagattcag atgggccact
     4861 gcttcggcca cgtgccgcgg ttcttctgca tccaaagaac ccggctgtcc cttgccgacc
     4921 gcgcagaagc cgcaatggcg tgtgcagatg tcgccgccga gcatgaacgt cgcggtgcga
     4981 tccgaccagc attcgaagat gtttggacaa cgtgcttcct ggcagacggt gtgcaggttc
     5041 aaaccttcga tcagttgcaa aacgttgttc tggttcgtcg ggtcgccgag acgaatccgg
     5101 agccattcgg gcttgggttg acggattttt tggttgttgc tgattacacg tagttcgcgg
     5161 gccaattgat ttacctctga ccgggattct acactatgcg accgacctaa gcccgtatgg
     5221 ggcaggcccg ccacctcaaa aggagaccgt tatgaagacc cttctttcct tcgtttgttt
     5281 gcttgtttta acgatcgttt caagtcaggc tgcgaatgcc gatatcagta agccgagacc
     5341 ggttgaacag ccttcttcga aagccgtttt gcggcggaat ctggagatcg tgccggacgg
     5401 aagagcgtgg actgcgcggc tgcagttgac gcaatctgat ttgaaggagc tgcgcgcggc
     5461 gatggatgcg gccgatggtc aggctggggt tgcggcgagt atcgcgcaaa gcccgacgcg
     5521 cacgatcgtc gcggggatgc tgctgtttct gtcggtttcg tttgcgggtg tttggctggc
     5581 gcgatctgct tccgcggggc gcgcgcgcaa ggcgatcgta gcggggattg tggtggttgc
     5641 ggtgattggc gccgcggcga tcatcacgca aggtaatgtt ggtccaccgc cgggatacta
     5701 cagttggatg aagctgtcga agaacttcgc gcaaggccgt gcgacgtcgg gggatttggt
     5761 gatcgagatc gttcctgacg aaccgaatcg cacgcccggt gtgaagctcc tgatcccgca
     5821 caacccgaag caaagcggcg acgaggaata gatccgttaa atcccgtgga aagaaccgct
     5881 gaactagagg ccgcacggtg gcatgcgaga caacgcgcgg aaagcaccgc gcgccggttt
     5941 gtcttgacga tcggaatgtg tttgctgggg gcggcggtgt tggcgacgtt gttgccgttg
     6001 caggtctcga tcgtaacggt gtttcttttt gcggggccgc agaattggtt cgagtttcgc
     6061 tactttctca tgcgcctgcc ggtaaggttc ggcaagtcgc gcaacttctt tgtcaccgcg
     6121 tttgccggca ttggggtact gacgatcacg tacgtttcgc tgccgttttt ttatcaaagc
     6181 gtcgcgtggg ccaacgaaac gtggctggtg gtgctggcga gttggaacac gctgttactc
     6241 gcgtggctcg cagtgctgat ccgcttgcgc gcgaaacaaa aacgcggtgt tgattgggcc
     6301 tgggccacgc ccgtgctgct cgcactcgcg gcgttgaatt ggctcgggcc ggagtttttc
     6361 agtctcgcga tcgtctacac gcatccgttg gtcgcactct ggttcctcga tcgacaactc
     6421 aaacgcacgc ggcccgaatg gctcgcagcg taccggcgtt gcctgttgct gttgccggtg
     6481 attctcggcg cgatgatctg gtccttgtcc caaacctcac cgctcagcga tgacaacggt
     6541 ctcttctggc gtatcacgca acactcaggc gcacagttgc tgccacaggt ttcgagccac
     6601 atgctcgtgt cggtgcatct gtttctcgaa atgctgcact acgctgtgtg gatcgtcgcg
     6661 cttcctttgg ttggtagagg gttttggcgg ttcaaggcga gtgagaagag acttccgcgc
     6721 acagcgctgc tagctgttgg ccttgtaggt gttgtgattc tgtggctcgg ctttgccacg
     6781 aattatacgg atacgaggga tctctacttc accatcgcga tcgcgcacgt gctcgccgaa
     6841 gcaccgtttc tactaaagac actctaaacg atgtcgcccc tcgaactctg gcgctttctg
     6901 ccgctcggat acctgctcac gatcgcgatc gagacgccga ttcttttctt cggtctcgcg
     6961 ccacgacatc cgaaacgtca cc
//
LOCUS       DASWTX010000054         2140 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_304063, whole genome shotgun sequence.
ACCESSION   DASWTX010000054 DASWTX010000000
VERSION     DASWTX010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2140
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304063"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(27..437)
                     /locus_tag="VGD38_00875"
     CDS             complement(27..437)
                     /locus_tag="VGD38_00875"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0726591.1"
                     /translation="MGQPNEPLFLILVVDDAADNLAMISLALQQQGYKVVTAANGEDA
                     VTVAAQTRPNLILMDINLPELDGLGATRRILENENLRDVPIVVVTAFGTEGFQRAAYD
                     VGASGYLTKPIDLDRMNQLIARLLSPEGSGPLLK"
     gene            complement(535..2049)
                     /locus_tag="VGD38_00880"
     CDS             complement(535..2049)
                     /locus_tag="VGD38_00880"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: protein motif:HMM:NF012946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY0726592.1"
                     /translation="MRCKFERIDVEHVNVIIVGAGLSGIGAACRLRMECPGKSFVILE
                     GRRAIGGTWDLFRYPGIRSDSDMFTLGYRFRPWRESKVMADGPSILNYIRDTAAEFQV
                     DKAIRYNHRVRRASWSSDEARWTVDAEVGLEIEGENGAGSKSKMVQFTCNFLYLCTGY
                     YDYTNGYTPEWPGVERFKGTIVHPQKWPEELDYTNKRVVVIGSGATAVTLVPAMAERA
                     KHVTMLQRSPSYIVSRPAIDRIANWLRRCLPDKTAYAASRWKNVLAATFFYNLARKRP
                     EFFKWMVARGVRKYLETDYDAKHFTPRYNPWDQRMCFVPDADLFNAMRSGRVSVVTDH
                     IDTFTETGLQLKSGEHLDADIIVTATGLVMKLFSGMQLLVDEKPVELPKTLVYKGMMF
                     SDVPNLAFAVGYTNASWTLKCDLTAEYVCRLLNHMDQHGYAVCVPRANDPSVEPEPVI
                     DFNSGYVLRAIDTLPRQGSKTPWRLHQNYVKDLSMMRYGSLDDGTMEFGHSLRG"
BASE COUNT          435 a          610 c          621 g          474 t
ORIGIN      
        1 caaaggcaga aaggtttgat tagtctttat ttgaggaggg ggccggaacc ttcgggcgag
       61 agaagccgcg cgattagttg gttcatgcga tcgagatcga tcggtttcgt taagtaaccg
      121 gacgcgccca cgtcatacgc ggcgcgttga aagccctccg tgccgaacgc ggtgacgacg
      181 acgatgggca catcgcgcaa gttttcgttt tcgagaatcc tgcgcgtcgc gccgaggccg
      241 tcgagctcgg gcaaattaat atccatcaaa atcagattgg gccgggtttg cgcggcgacc
      301 gtgactgcat cttcgccgtt ggcggcggtc acgactttgt atccctgttg ctggagcgcg
      361 aggctgatca tcgcgaggtt gtcggcggcg tcgtcgacga cgaggatcag aaacagcggt
      421 tcgttaggtt gacccatcgc ggagacctcc tcacgcttca aaggtggaag ccccgacgtt
      481 gctaatgggt ctttcgttgt cattgaggga ttatatacaa acgccgatca gtgttcatcc
      541 gcgtaggctg tggccgaact ccatcgtgcc gtcgtcgagc gatccgtagc gcatcatcga
      601 gagatctttc acgtagttct ggtgcaggcg ccacggcgtt ttcgagccct gacggggcag
      661 tgtgtcgatg gcgcgcagga cgtagcccga gttgaagtcg atgacgggtt cgggttcgac
      721 gctcggatcg tttgcgcgtg ggacgcagac ggcgtagccg tgctggtcca tgtggttcag
      781 cagccggcat acgtactcgg cggtgagatc gcacttgagc gtccatgagg catttgtgta
      841 gccgacggcg aaggcgagat tcggcacgtc gctgaacatc atgcctttgt agacgagcgt
      901 cttcggtagc tcgaccggtt tttcatcgac gaggagttgc atgccgctga agagcttcat
      961 cacgagaccg gttgcggtga cgattatgtc ggcgtcgaga tgttcgccgg atttgagttg
     1021 gagaccggtt tcggtgaagg tgtcgatgtg atcggtgacg actgagacgc gtccgctgcg
     1081 catcgcgttg aagaggtcgg cgtcggggac gaagcacatg cgctggtccc acgggttgta
     1141 gcgaggcgtg aagtgcttcg cgtcgtaatc tgtttctaga tacttccgca cgccgcgcgc
     1201 gaccatccac ttgaaaaact ccggccgctt gcgtgcgagg ttgtagaaga acgttgcggc
     1261 gagcacgttt ttccagcgtg atgctgcgta tgcggttttg tctgggaggc accgtcgcag
     1321 ccaattggca atcctgtcta tcgcgggacg cgagacgatg taactcggcg agcgctggag
     1381 catcgtgacg tgtttggcgc gttccgccat cgccgggacg agcgtcaccg cagtggctcc
     1441 gcttcctatc accacgacgc gcttgttagt gtaatcgagt tcttcaggcc acttctgcgg
     1501 atggactatc gttcccttga accgctcgac gcctggccac tccggcgtgt aaccgttcgt
     1561 gtagtcgtag tagccggtgc agagatagag gaagttgcaa gtgaactgga ccatcttgct
     1621 cttcgatcct gctccattct ctccctctat ttccagaccc acctcagcgt caacggtcca
     1681 gcgcgcctca tccgacgacc acgatgcgcg tcgcacacga tggttataac gaatcgcctt
     1741 atcaacctgg aactccgcag cagtgtcgcg aatgtagttg agtatcgacg gcccatcagc
     1801 catcaccttc gactcacgcc acggccgaaa ccgatacccg agcgtaaaca tatccgagtc
     1861 agatctaatc cccggatacc gaaacagatc ccacgtcccg ccaatcgccc tgcgcccctc
     1921 aagaatgaca aaactcttcc cgggacattc catcctcaac cgacacgccg cccctattcc
     1981 cgatagcccc gcgcctacga tgatgacgtt aacgtgttcc acatcaatcc tctcaaactt
     2041 gcaacgcaca aagccgcgaa gcgtactgac actttcaact actctatgga gtatccccca
     2101 ctcgccaaat cgaccctgac aacataaaat gatgaataac
//
LOCUS       DASWTX010000055         5964 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_44312, whole genome shotgun sequence.
ACCESSION   DASWTX010000055 DASWTX010000000
VERSION     DASWTX010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5964
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44312"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1013
                     /locus_tag="VGD38_00885"
     CDS             <1..1013
                     /locus_tag="VGD38_00885"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HEY0726593.1"
                     /translation="QNLLDTLETPDKEDLRSIALVLGWLKGPSVDRALTRLMGRADLR
                     DEIVGALVRHGTATVDLLIAQLTAEDLEVRRSAAVALGRIGDPIATAPLTNALSDESL
                     SIDAANALGQIGDPRALDGLLKLIGNSDASVRQAAVSALNSLAVPALAKRIIPLLYDS
                     DSNVRESAVKIAGYFGYPDAAGALVDLSSSDPNERVRCAAIEHLPFVEDERVLDVLAR
                     AIKEEPPAVRAAAARALGNMDAPQADGHLIEALSDYDVWVRYFSARALGRRRSEDSVA
                     ALERVIEQEQFNHVRIAALDSLGQIGGGRVAGIAAGVVRDDDPNVAHAAQAVLGKSGQ
                     RD"
     gene            1013..1879
                     /locus_tag="VGD38_00890"
     CDS             1013..1879
                     /locus_tag="VGD38_00890"
                     /inference="COORDINATES: protein motif:HMM:NF013867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008983 - protein-glutamate
                     O-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HEY0726594.1"
                     /translation="MGLRTQNLALPEGAGTLIQNLIHERTGMFFDNGKCDLLLDKLSP
                     LVIDRGFTSYLDYYYLLKYDSTAQAEWQNVMNALSVQETYFWREIDQVRALVQTLVPQ
                     WHARNRGSTLRIWSAACATGEEPLTIAIALNEAGWFDRASIEIVASDASSKAIERATN
                     GVYKQRAFRNLAAPLRERYFVPEGSVWRVNSDIHSRIKWSVANLMEENQIAKLAVADF
                     IFCRNVFIYFSETAISRVVRSFSRFIKPPGYLFVGAAESLLRLTSDFNLTEVDDAFVY
                     LKRERTVSLTEH"
     gene            1879..2925
                     /gene="cheB"
                     /locus_tag="VGD38_00895"
     CDS             1879..2925
                     /gene="cheB"
                     /locus_tag="VGD38_00895"
                     /EC_number="3.1.1.61"
                     /inference="COORDINATES: protein motif:HMM:NF001965.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0008984 - protein-glutamate methylesterase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis-specific protein-glutamate
                     methyltransferase CheB"
                     /protein_id="HEY0726595.1"
                     /translation="MDRVIRVVVVDDSAYVRKVVKEILSRSPFIEVVGTARDGREALE
                     LVEQLDPDVVTCDLIMPELDGVGFVREQMQRRPVPIIIMSIANENAEAALAALDAGAI
                     DFVQKPTALASEKIFEVSAELIEKVKAAGQVSLNRVPSPPPVSTFPTEPEKKIKGSHS
                     VDIVVIGISTGGPQALKRLIPQLPQSFPVPVVMVMHMPVGYTEMYAAKLNEQSNLEVR
                     EAAEGDEVKPGRAFLAPAGRHLFLKRDESGKIVTHLDARPFNTLHKPSVDVLFQSAAE
                     IYGSRVLGVVMTGMGSDGKEGAAWIKSQGGLVFTEAESSCVVYGMPCVVNEAGLSDRS
                     VALEDMARAISEVV"
     gene            2922..3305
                     /locus_tag="VGD38_00900"
     CDS             2922..3305
                     /locus_tag="VGD38_00900"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0726596.1"
                     /translation="MRPKVLIVDDSGLSRRTLRRILETGDYEVVEAEDGMTALEVYFL
                     EKPRLVLLDLVMKGMYGLDVLVKLREMDPKALVVIASADIQSSTRKMVDDAGALGFIN
                     KPFVSEQVLMAVKAALAEGATSETN"
     gene            3292..3909
                     /locus_tag="VGD38_00905"
     CDS             3292..3909
                     /locus_tag="VGD38_00905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726597.1"
                     /translation="MKLTERQSDALSELINIAFARTGAALSELTGHRVMLNPPEVAVY
                     QTEELRPALAKFVPGDVASIHQVFAGPVAGDALLLLNYAGAVHLTDLLTDGNNHSVYL
                     DESAREVLTEVGNILLNACLGMFGNLLNVHVTFSVPRLHLETLDELIESITTGKTDMH
                     YALVVYTGFQIRDSSVKGFLVIVLSVDSLDRLIHEVDAWEAQQSK"
     gene            3906..5561
                     /locus_tag="VGD38_00910"
     CDS             3906..5561
                     /locus_tag="VGD38_00910"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0726598.1"
                     /translation="MTVSSTDTLLNAAVLHWMHDLAAQGIITTDNQLNVVAWNQWMEE
                     HTGKRSSEILGKNLLELFPELVTRRLDRNYKWALEGQVRVLSQALHGYLIAMPVVSGE
                     HGYAQMQQAVRISPLRHDGQVIGTLTIIDDVTERVAREAELQAQIEARSQLLSSEKLA
                     RNEAERANRLKDEFLATISHELRNPLNAILGWAHMMRLGKLTPANVERAVETIYRNAK
                     SQAQLVSDLLDVSRIISGKLRLDVRQVDLLAIVNAAVDSIRPAADAKTIRLQTMLDPA
                     AGPISGDADRLQQIVWNLLTNAVKFTPKGGRIQVKVQRVDSHVEIVVSDSGVGISKEF
                     LPYVFDRFRQADASTTRTQGGLGLGLSIVHQLVDLHGGNVSVYSEGEGKGATFTISLP
                     FVGVISSPKEAESITQAPNEDIISLEGLPSLKGLKVLVVDDEADTRELIREVLKECGS
                     EVILSRSVAEALEALEQHKPDILISDLGMPDEDGYALISKIRALPSERGGHIPAAALT
                     AYARAEDRMRVLRSGFQFHLPKPVDSAELVTVVASLAGRAYKS"
BASE COUNT         1250 a         1590 c         1855 g         1269 t
ORIGIN      
        1 tgcaaaacct gctcgatacg ttggagacgc ccgataaaga agacttgcgt tcgatcgccc
       61 tggtcctcgg ctggctcaaa ggtccgagcg tggaccgcgc actcacgcgc ctgatgggac
      121 gtgccgatct gcgcgacgaa atcgtcggcg cgctcgtgcg gcacggcact gcaactgtag
      181 acctattgat cgcccagtta accgcggaag atctggaagt gcggcgctcc gccgccgtgg
      241 cgctcggacg catcggcgat ccaatcgcaa cggcgcctct cacaaatgca ctcagcgacg
      301 aatcgctgtc catagacgcc gcgaacgcgc tcggccaaat cggagatccg cgagccctcg
      361 acggtttgct caaactgatc ggcaacagcg acgcgtcagt caggcaagcg gccgtcagcg
      421 cgctcaattc gctcgcggtt cccgcgctgg cgaaacgtat tattccgctt ctttatgact
      481 cagattcgaa cgttcgagaa tcggcggtca agatcgccgg atacttcggt taccccgacg
      541 ccgccggtgc tttagtcgat ctaagcagca gcgatccaaa cgagcgggtg cggtgcgcag
      601 ctatcgaaca cctgccgttt gtcgaagacg aacgagttct cgacgtgctc gcgcgcgcaa
      661 tcaaagaaga accgccggcc gttcgcgccg ctgcggcacg cgctttggga aacatggacg
      721 cgccacaggc cgacggccac ttgatcgaag cactttcgga ttacgacgtc tgggtgcgtt
      781 acttcagcgc gcgcgcactc ggccgccgcc ggtcggagga cagcgtcgcg gcgctcgagc
      841 gggtaatcga gcaggaacaa ttcaaccacg tccgtattgc ggcccttgat tcgctggggc
      901 agatcggcgg cgggcgtgtc gcagggattg ctgcgggggt ggttcgagac gacgacccga
      961 atgtggcgca cgcggcccag gctgtattgg gaaagagtgg gcaacgcgac taatggggct
     1021 tcgaacacag aatctggcgc tgcctgaagg cgccggcacc ctgattcaaa acctaatcca
     1081 tgagcgaaca ggaatgttct ttgacaacgg caagtgcgac ctcttgctgg acaaactatc
     1141 gcccctcgta atcgaccgcg gttttacttc gtatctcgat tattactact tgctgaaata
     1201 cgactcgacc gcgcaggcag agtggcaaaa tgtgatgaac gcgctatcgg tgcaggagac
     1261 gtacttctgg cgcgagatcg atcaggttcg ggcgctggtc cagacattag tgccgcagtg
     1321 gcacgcgcga aaccgtggtt cgacactgcg gatctggagc gccgcgtgcg cgacgggcga
     1381 ggagccgttg acgattgcca tcgccttgaa cgaagctggg tggttcgatc gggcgtcgat
     1441 cgagattgtg gccagcgacg ccagttccaa agcgatcgaa cgcgccacta acggtgtcta
     1501 taagcaacgc gcgtttcgca acctggcggc gccgttgcgc gagcgttatt tcgtaccgga
     1561 aggctcggtg tggcgcgtca acagcgatat acattcgcgc atcaagtggt cggtcgcaaa
     1621 cctcatggaa gagaatcaga tcgcaaagct ggccgtggcg gattttattt tttgccgtaa
     1681 cgtctttata tatttttcag aaaccgcgat cagccgggta gtccgatctt ttagcaggtt
     1741 tataaagccg cccggttact tgtttgttgg cgccgccgaa tcgttgttgc ggctgacgtc
     1801 tgattttaac ttgaccgaag ttgacgacgc ttttgtgtac ctcaagcgcg agcgaactgt
     1861 ctcgctaacg gagcattgat ggatcgagtg atacgagttg tggtggtcga cgattctgcc
     1921 tacgtgcgta aggtagtgaa agagatcctc tctcgcagtc cgttcatcga ggttgtcggc
     1981 accgcgcgcg acggccgcga agcgttggag ctggtagagc aactcgatcc cgacgtggtc
     2041 acgtgcgatc tgatcatgcc ggaactggac ggcgtcgggt tcgtccgcga acagatgcaa
     2101 cggcgtccgg tgccgatcat catcatgagc atcgcgaacg agaatgcgga agctgcattg
     2161 gcggcgctgg atgccggcgc gatcgacttc gtacaaaagc cgaccgcgct ggcgagtgaa
     2221 aagatctttg aagtcagtgc ggagttgatc gagaaggtca aagctgcggg tcaggtctcg
     2281 ctcaaccgtg ttccgagtcc gccgccggtg agcacgttcc caactgaacc cgagaagaag
     2341 atcaagggca gtcattctgt tgacatcgtc gtgatcggaa tttcgacagg tgggccgcag
     2401 gcgttgaaac ggctgatacc gcagttgccg cagagttttc cggtgccggt cgtgatggtg
     2461 atgcacatgc ctgtcggtta caccgagatg tacgcggcga agttgaacga acagtcgaat
     2521 ctcgaagtgc gcgaggccgc cgagggagac gaagtcaaac ccggccgcgc ttttctcgcg
     2581 cccgccggac gtcacttatt tttgaagcgc gacgaaagcg gcaagatcgt gacgcatctc
     2641 gatgcgcgtc cttttaacac gctgcacaag ccgtctgttg acgtgctgtt tcaatcggcc
     2701 gcggagatct acggcagtcg tgtgctcggc gttgtgatga caggaatggg atcggacggc
     2761 aaagagggcg cggcgtggat caaatcgcag ggcggactcg tcttcacgga agccgagagt
     2821 agttgcgtgg tgtatggtat gccatgcgtc gtaaacgaag ccggtttgag tgacagaagc
     2881 gtcgctctcg aagacatggc ccgcgccata agtgaggtcg tatgagaccg aaagttttga
     2941 ttgtcgatga ttcggggctc tcacgcagga ccctgcggcg tattctcgag accggggatt
     3001 acgaggtggt ggaagcggaa gacggaatga ccgcgcttga agtctacttc ctcgaaaagc
     3061 cgcggctggt gttgctggat ctggtgatga aaggcatgta cgggcttgat gtgctggtta
     3121 aattgcgtga gatggatcca aaggcgctgg tggtgatcgc gagcgccgat atccaaagtt
     3181 cgacacgtaa gatggttgat gatgcgggcg cgctcggctt catcaataag ccatttgttt
     3241 ccgaacaagt gcttatggcc gttaaggccg ctcttgcgga aggagctact agtgaaacta
     3301 actgagcggc agagcgacgc tctttccgaa ctcatcaaca ttgccttcgc gcggaccgga
     3361 gcggccctct cggaattgac gggccatcgc gtgatgctca atccgccgga ggttgcagtt
     3421 tatcaaactg aagagttgcg cccggcgctg gcgaagtttg ttcccggaga cgtggcttcg
     3481 attcatcagg tgtttgccgg accggtggcg ggtgatgcgt tgctgttatt gaactacgcg
     3541 ggagcagtgc acctcaccga cttgctcact gatggaaaca accattcggt ttatctcgac
     3601 gaatcagcgc gtgaagtgtt aacggaagtc ggcaacattc tcttgaatgc gtgtctcgga
     3661 atgttcggca acctgctgaa tgttcacgtg acgttctctg tgccgcggct tcatctcgaa
     3721 acactcgacg agttgatcga gtcgatcacg acaggcaaga cggacatgca ctacgcgctc
     3781 gtggtgtaca cggggtttca gattcgcgac agttcggtca aagggttttt ggtgattgtg
     3841 ttgagcgttg attccctcga tcgcttgatt cacgaagtcg atgcctggga ggcgcagcaa
     3901 agcaagtgac ggtcagctcc accgacacat tactgaacgc cgcggtcctg cactggatgc
     3961 acgatctggc ggcgcaggga attatcacca ctgataatca gttgaatgtt gtcgcgtgga
     4021 accagtggat ggaggagcac accgggaagc ggtcgtctga aatactcggt aagaacctgc
     4081 tcgagttgtt tccggaactg gttacgcgcc ggctcgatcg aaattacaaa tgggcgcttg
     4141 aaggtcaggt gcgcgtgttg tcgcaggcgc tgcacgggta tttgatcgcg atgccggtcg
     4201 tttcgggtga gcacggttac gcgcagatgc agcaagcggt gcgcatctct ccgctgcgtc
     4261 atgatggtca ggtaatcggc acgctcacga ttatcgacga cgttacggaa cgtgtggcgc
     4321 gtgaggctga gttgcaggcg cagatcgaag cgcgttcgca gctcttgtcg agtgaaaagc
     4381 tcgcgcgcaa cgaagcggag cgggcgaacc gtttgaagga cgagtttctg gcgacgatct
     4441 cgcacgagct gcgcaatccg ttgaacgcga ttctgggttg ggcgcacatg atgcgtctcg
     4501 gcaaactcac gcccgcgaat gtagagcgcg cggttgagac gatttatcgc aacgcgaaat
     4561 cgcaggcgca gttggtgtcg gatttgctgg acgtgtcgcg catcatttcc gggaagctgc
     4621 ggctcgacgt gcggcaggtt gatttactcg cgatcgtgaa tgccgcagta gattcgattc
     4681 gtccggctgc ggatgcgaag acgattcgac tgcaaacgat gctcgatccg gcggctggcc
     4741 caatctccgg cgacgcggat cggttgcaac agattgtatg gaacctgttg acgaacgcgg
     4801 tgaagttcac gccgaagggc gggcgcatac aggtgaaggt acagcgcgtc gattcgcacg
     4861 ttgagatcgt agtgagcgat tcgggtgtgg gcatcagcaa agagtttctt ccttacgtgt
     4921 tcgatcgttt tcgacaggcc gatgcgagca cgacgcgaac gcagggcggc ttggggcttg
     4981 ggctttcgat cgttcatcaa ctggtcgact tgcatggcgg caacgtcagc gtgtacagcg
     5041 aaggagaagg gaaaggcgcg accttcacga tcagcctgcc atttgttggt gtgattagta
     5101 gtccgaagga agctgagtcg atcactcagg cgccgaatga agacatcatc tctttagaag
     5161 gtctgccttc gctcaagggg ctgaaggtgc ttgtggtcga tgacgaggca gacacgcgcg
     5221 aactgattcg cgaagtgctg aaggagtgcg gctctgaagt catactcagt cgttccgtcg
     5281 ccgaagctct ggaagctctc gaacaacaca agcccgacat tctcatcagc gacctgggca
     5341 tgcccgacga ggatggttac gcgctgatct ccaagattcg tgcgctgcct tccgagcgtg
     5401 gcggtcacat tcccgcggcc gccctcacgg cctacgcccg cgccgaagat cgcatgcgcg
     5461 tcctgcgctc cggctttcaa ttccacctcc ccaaacccgt cgactccgcc gagttagtca
     5521 cggtcgtcgc cagcctcgcc ggccgcgcgt acaaatcatg aaatcgcacg gcttcccgaa
     5581 cggtgttagg tgagcagctt gaagcaaatg ctagcgcaaa gcgtcgagat gttgtttctt
     5641 cgtacgtaac tgtcgatcca caatgcttgg agctttccac cgccaaggtt gttgagcatc
     5701 accatcggtt cgtcctgcga gcggacgcgc attgcaattc tatcggcaat cgcagttcaa
     5761 accctgaagc gtggcggcga atcggttcga ttacacttgg ccacggtccc atgactgagg
     5821 aagtgttcta cagctccgga attccccggg cagagtgcca aacgcgtgca atctcacaaa
     5881 tcttcgcgtc gtgattgact cggtacacga ttcgatatgg acggaagacc acctcgcgaa
     5941 ggaattcgtt accgaattcg ggta
//
LOCUS       DASWTX010000056         3309 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_326000, whole genome shotgun sequence.
ACCESSION   DASWTX010000056 DASWTX010000000
VERSION     DASWTX010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3309
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326000"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            144..1814
                     /locus_tag="VGD38_00915"
     CDS             144..1814
                     /locus_tag="VGD38_00915"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0726599.1"
                     /translation="MPKDRPLTVALTFTFATLVSIGFVSRAGAQRSAIDTYAITNARI
                     VTVSGATLDRGTVVIRNGLIAAVGANVNAPSDARIIDGNGLTVYPGLIDAYTNLALPE
                     AAPSPSPGGGGGGGGFFAAPPRPSPGGPNSTQPPGLQPEVLVEDVIRPGGNEIESSRS
                     IGITTALTSPRTGIWMGQSALINLAGDTPQEMIVRSPVAMHVGFTPLRGGYPGSLLGV
                     FATLRQMMLDAQRYRDSIAMYERSPRGMRRPEMDRSLAALVPVVDGRMPVVMLANSER
                     EIARALDLGAEFKLKLIIAGGREADRLADRLAKQNVPVLLSLNLPRRTTAAIPEADPE
                     PMRVLRERVAAQQTAGKLAKAGVRFAFQSGSLTNISDLLANANRTIENGLSATDALRA
                     FTIWPATIFGVENQLGSIETGKIANLTITRGDLFDRNSRIAHVFIDGRPVDLRPATGG
                     PGGRNVLSGTWHLTINLGQSERAATLNLTQEGERLSGSIAGSLGTGEISNASMTGGEV
                     RFTVPLEIEGQTKEATFTGTLTGDQIRGTVNVVGSAPGSFTANRARPN"
     gene            1826..3217
                     /locus_tag="VGD38_00920"
     CDS             1826..3217
                     /locus_tag="VGD38_00920"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0726600.1"
                     /translation="MKTKLILLVVAFMGLSLGSARAQQTQETLIRNATVLTVTRGTLQ
                     NTDVLLRNGKIAGVGKNLNASANARIIDGTGKYVMPGIIDAHSHSMLDTINEGTLAVT
                     SMVRTEDVLNPTDVDLYRGLAGGVTTLNLLHGSANPIGGLNTVVKIKYGRPASEFLFP
                     GAMPGIKFALGENVKRSSTPNQPGVTRRYPNTRMGVEETIRDAFVRARDYKRAWDEYR
                     AAVGKDKNLLPPRRDLQLEPLVEILEGKRYVHAHCYIASEILMLINLADEFGFKIKTF
                     QHVLEGYKVAKEIAAHGAGASIFADSWSYKIEAYDAIPYNAAIMTRAGVVVSMNSDSD
                     ERARRLNIEAAKAMHWGDLTEDQALRTVTLNPAIQLGIQERVGSIEVGKDADLAIWNG
                     HPFSVYSRVDTTFVDGTVFFDRQQDLARRADLAKERAVLEQAEPNKPPAPGQSPRGRR
                     QRPTDESIEEEQP"
BASE COUNT          685 a         1005 c          997 g          622 t
ORIGIN      
        1 ggaacggaaa cgcaaaccgt taactaatgc ttgagatctg tgtctggtgc tttgttcgtt
       61 ggtggacgaa gcaccagttc ttacgctaag ctctcgtctc tttcctgttt tcgcaaataa
      121 aactcactgg gatttgggtg cttatgccaa aagaccgccc gcttactgtc gcccttactt
      181 tcaccttcgc cacactcgtc tccatcggct tcgtctcgcg cgccggcgcg cagcgcagcg
      241 cgatcgacac gtacgcgatc actaacgcgc gtatcgtgac ggtctccggt gcgacgctcg
      301 atcgcggcac ggtggtcatt cgaaacggcc tgatcgccgc cgtcggcgca aacgtcaacg
      361 ctccatccga cgcgcgcatc atcgacggca acggcttaac cgtctatcca ggcctgatcg
      421 acgcctacac caatctcgcg cttccggaag cggcgccttc gccgtcaccc ggcggcggtg
      481 gcggcggcgg aggtttcttc gctgctccgc cacgcccgag tccgggtggt ccaaactcca
      541 cacagcctcc tggcttgcag ccggaagtgt tggttgaaga cgtgatccgt cccggcggca
      601 acgagatcga atcgtcgcgc agcatcggca tcacgaccgc gctcacgtcg ccgcgcaccg
      661 gcatctggat gggccagtcg gcactgatca acctcgcggg cgacacgccg caggagatga
      721 tcgtgcgttc gccggtcgcg atgcacgtcg ggtttactcc gctgcgcggc gggtatcccg
      781 gttcgttgct gggcgtgttt gcgacgttgc ggcagatgat gctcgacgcg cagcgttatc
      841 gcgactcgat cgcgatgtac gaacgttcgc cgcgcggaat gcgccggccg gaaatggatc
      901 gctcgctggc ggcgctggtt ccggtcgttg acgggcgcat gccggtggtg atgctggcca
      961 acagcgaacg cgagatcgcg cgcgcgctgg atttgggcgc cgagttcaaa ctgaaactga
     1021 tcatcgccgg tggacgcgaa gccgatcggc tcgcggatcg tctggcgaaa cagaacgtgc
     1081 cggtgctgtt gtcgctcaac ttgccgcgac gcacgacggc ggcgattccg gaagccgatc
     1141 ccgaaccgat gcgcgtgttg cgcgagcgtg ttgcagcaca gcaaacggcg ggcaagctcg
     1201 cgaaagccgg cgttcgtttt gcgtttcagt caggttcgtt gacgaacatt tccgatctgc
     1261 tcgcgaacgc gaaccgcacg attgagaacg gactatcggc cacggatgcg ttgcgcgctt
     1321 tcacgatctg gcccgcaacg atcttcggtg tcgaaaacca actcggctcg atcgagaccg
     1381 gcaagatcgc aaacctgacc atcacgcgcg gtgatctttt cgatcgcaac agccgcatcg
     1441 cgcacgtgtt catcgatgga cgtccggtcg atctgcggcc cgcgacgggt ggtccaggcg
     1501 gacgcaatgt gttgagtgga acgtggcacc tcaccatcaa tctcggccag agcgaacgag
     1561 ccgcgacgtt gaatctgacg caggaaggcg agcggttgag cggttcgatc gccggttcgc
     1621 tcggaacagg cgagatctca aacgcgtcga tgacaggcgg tgaagttcgt ttcaccgtgc
     1681 cgctggagat cgaaggacaa actaaagaag cgacgttcac cggaacgctt acaggcgacc
     1741 agattcgcgg caccgtcaat gtcgtaggct cggcgccggg atcgttcaca gcaaatcgag
     1801 cacgaccaaa ctgaaaaggg attttatgaa aacaaaactc attctactcg tcgtggcgtt
     1861 catgggatta agtctgggat cggcgcgcgc gcagcaaaca caggaaacgc tgatccgcaa
     1921 cgcgacagtg ctcaccgtca cgcgcggcac gttgcaaaac accgacgtgc tgctgcgcaa
     1981 cggcaagatc gccggcgtcg gcaagaacct caacgcttcc gcaaacgcgc gcatcatcga
     2041 cggcaccggc aagtacgtca tgccgggcat catcgatgct cactcccact cgatgctcga
     2101 cacgatcaac gaaggcacac tcgccgtcac gtcgatggtc cgcaccgagg acgtgttgaa
     2161 tccaacggac gtcgatcttt atcgcgggct ggcaggcggc gtgacgacgt tgaacctgct
     2221 gcacggttcg gcgaatccga tcggaggctt gaacacggtc gtgaagatca agtatggccg
     2281 gcccgcgagt gagttcctgt ttccgggcgc gatgccgggg atcaagtttg cgctcggcga
     2341 aaacgtgaag cgttcgagca cgccgaatca gcccggcgtg acgcgccgtt atccaaacac
     2401 gcgcatgggc gtcgaagaga cgattcgcga tgcgttcgtt cgcgcgcgcg attacaaacg
     2461 cgcgtgggac gagtaccgcg cagccgtcgg caaggacaag aacctgctgc cgccgcgacg
     2521 cgatctgcaa ctcgaaccgc tcgtcgagat tctcgaaggc aagcgctacg ttcacgcgca
     2581 ctgctatatc gccagcgaaa tcctgatgct gatcaatctc gccgacgagt ttggtttcaa
     2641 gatcaaaacg ttccagcacg tgctcgaagg ttacaaagtc gcgaaagaga tcgcggcgca
     2701 tggcgcgggc gcgtcaatct ttgctgattc gtggagctat aagatcgagg cttacgacgc
     2761 gattccttac aacgccgcca tcatgacgcg cgcgggtgtg gttgtatcga tgaactccga
     2821 ctccgatgaa cgcgcgcgcc gcttgaatat cgaagccgca aaggcgatgc actggggcga
     2881 tctgactgaa gatcaggcgc tccgaacggt cacgctcaat ccggcgatac aactcgggat
     2941 ccaggaacgc gtcggttcga ttgaagtcgg taaggacgcg gacctcgcga tctggaacgg
     3001 tcacccgttt agtgtttact cgcgcgtcga tacgaccttc gtcgacggca ctgtattctt
     3061 cgatcgccaa caggatctcg cgcgtcgcgc ggatctcgcc aaagagcgtg ccgtgctcga
     3121 acaggcggaa cctaacaaac ctccagcacc cggccagtca ccacgcggaa ggcgccaacg
     3181 gccaaccgat gaatcgatcg aggaggagca gccgtgaacc tcataaagat tctgctttcc
     3241 atcggtgtta tctctggctc agttgcagct caacaaattg gcagtcccac gactcaacag
     3301 ggcgtcata
//
LOCUS       DASWTX010000057         2217 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_87191, whole genome shotgun sequence.
ACCESSION   DASWTX010000057 DASWTX010000000
VERSION     DASWTX010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2217)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2217)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2217
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87191"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2217)
                     /locus_tag="VGD38_00925"
     CDS             complement(<1..>2217)
                     /locus_tag="VGD38_00925"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0726601.1"
                     /translation="VVNIAEGAALITPETSTVARQLSSEQLVQVPTSTRSFTQLLSAE
                     AGVSSDLSPVLTNGNGNQSPSVNGTRTTSTSLFFNGVDATNITSNEGSLNGNIAPAPE
                     TLSEVKLQTSLYDASTGRSGGGNFQLVTKSGSNQFNGSAYYYVQNEKFNANDFFFNKD
                     GIDRPKARRNEGGFTIGGPIIKDRFFFFGGYQHTQANTGFVSTASSITVLPAALRLIN
                     GARTKENLWAAFSQLNPGILASIPKANCNPTVNGVVDRACISDTAVALLNVRNPATGD
                     FLIPAPRAGNIVGNDINVTGNNGGNPFVRQRNVFPAEFEQDQFTIKLDGRLSNKNTLT
                     GTLFWANFPGYDPFPDPASLASPITVKRSDRNRTLAISDQHVFGPRFINEVRFGYFSL
                     NNTRVLDDPFLAITNESVGIPNPAVAFDQGPGTLRLGHYVGRPGTLLERFSFGGPNDS
                     FNRREQKTFSLADNITYIRGDHTLRIGVEGKRHSFNTALPEEQATEFEKFDNFTQLLR
                     GVATEADTQFGVTEKRFRFRDVSAYVADDWKVNRKLTLNAGVRWEWFGWPEEENGLIG
                     NFDPSLVTDFDNPIAGFIVPSNAGLTGFAAVDASIQATTRAATKSTIHSQDLNNFAPR
                     IGFAWTPFDNNRLVLRGGYGVFFDRPSAAFINTVFSNYPHLREEEVTFPGSNVPLNSA
                     WSQQDPNFPFSQYLPNRVVRTGGANGTYQIRDNTNVTRGADGTLNPVDPATGLPFRG"
BASE COUNT          458 a          612 c          650 g          497 t
ORIGIN      
        1 cctctaaacg gaagaccagt agccgggtcc accggattga gtgttccgtc ggcaccgcga
       61 gtcacgttcg tgttgtcgcg aatctgatac gttccgtttg cgccgccggt gcgcaccacg
      121 cgattcggca gatactggct gaaaggaaag tttggatcct gttgtgacca cgccgagtta
      181 agcggcacgt tgctgccggg gaaagtcact tcctcttcgc gcaagtgcgg atagttactg
      241 aagacggtgt tgatgaatgc cgctgaagga cggtcgaaga aaacaccgta gccgccgcga
      301 agcaccaacc ggttgttatc aaaaggcgtc cacgcaaaac cgatgcgtgg agcaaagttg
      361 ttcaagtcct gactgtggat cgtgctcttc gtcgcagcgc gggtcgtcgc ttggattgaa
      421 gcgtcaacag ccgcgaagcc agtcaaaccg gcgttcgaag gaacgatgaa acccgcgatc
      481 ggattgtcga aatccgttac caaagaagga tcgaagttac caatcaatcc gttctcttct
      541 tcgggccagc cgaaccactc ccaacgcaca ccggcgttca gagtcaactt acgattcact
      601 ttccagtcgt cggccacata ggcgctcacg tcgcggaagc ggaaccgctt ttccgtaacg
      661 ccaaactggg tatcggcttc ggtagcaacg ccgcgcagaa gctgagtgaa attgtcgaac
      721 ttttcaaact ccgtcgcctg ctcctcgggt aacgccgtgt tgaagctgtg acgctttcct
      781 tcgacgccga ttcgcaaagt gtgatcgccg cggatgtagg tgatgttgtc cgcgagtgaa
      841 aatgttttct gctcgcggcg attgaaggag tcgtttggtc caccgaagga gaacctttcc
      901 agcagcgttc cggggcgtcc gacgtagtgg cccaagcgca acgtgcctgg accttgatcg
      961 aacgcgacgg cgggattcgg tattcccaca gactcattcg tgatcgcgag aaacggatcg
     1021 tcaagcacac gggtgttgtt cagtgagaag taaccaaacc gtacttcgtt gatgaagcgc
     1081 gggccaaaca cgtgctgatc cgagattgcg agcgtgcgat tccgatccga gcgcttaacc
     1141 gtaatcggcg acgcaagact ggccggatcc gggaacggat cgtagcccgg gaagttggcc
     1201 cagaagagcg ttcccgtcaa cgtgttcttg ttgctgagcc gtccgtcgag cttgatcgtg
     1261 aactggtcct gctcaaactc cgccggaaac acgttgcgct gccggacgaa aggatttccg
     1321 ccattgttgc cggtcacgtt gatatcgtta cctacaatgt tcccagccct gggcgcggga
     1381 atcaggaagt cgcccgtcgc gggattgcga acgttcagca gcgctacggc cgtgtctgaa
     1441 atacacgcgc ggtcgacgac gccattcacc gttggattgc aattagcttt cggaatcgac
     1501 gcgagaatcc cgggattcaa ctggctaaac gccgcccaca ggttctcttt cgttcgcgcg
     1561 ccgttgatga gccgcaacgc agccggcagc accgtgatgc tgctggcggt actcacgaaa
     1621 cccgtgtttg cctgcgtgtg ctgatagcca ccaaagaaga agaacctgtc tttgatgatc
     1681 gggccaccaa tggtgaagcc gccctcgttg cgcctggcct ttggccggtc gatgccgtct
     1741 ttgttgaaga agaaatcgtt ggcgttgaac ttttcgttct gcacgtagta gtacgcgctg
     1801 ccgttgaatt gattcgaacc gctcttggta accagttgga agttgccgcc gcccgatcgt
     1861 ccggtcgagg cgtcgtagag gctcgtctgt agtttcactt ccgagagcgt ttccggagcc
     1921 ggtgcgatat tgccgttgag cgatccttcg tttgacgtga tgttggttgc gtcaacgccg
     1981 ttgaagaaca agctcgtgct cgtcgtgcgt gttccgttta ccgacggtga ttggttgccg
     2041 ttgccgttcg tgagcaccgg ggataaatct gaactcactc cggcttcggc agagagcaac
     2101 tgcgtgaagc tgcgtgtcga cgtcggtacc tggaccaact gttcagaact tagctgccgc
     2161 gcgacagttg aagtctcggg cgttatcagc gccgcacctt cggcgatatt gacgaca
//
LOCUS       DASWTX010000058         1518 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_195561, whole genome shotgun sequence.
ACCESSION   DASWTX010000058 DASWTX010000000
VERSION     DASWTX010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195561"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..444
                     /locus_tag="VGD38_00930"
     CDS             <1..444
                     /locus_tag="VGD38_00930"
                     /inference="COORDINATES: protein motif:HMM:NF026220.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YCF48-related protein"
                     /protein_id="HEY0726602.1"
                     /translation="KTWRQVDGVPRDVPINTIAQDPQRPDRVFVGTKQALFMTHDGGE
                     TWSRRGGNLPFGDFTAILINPRNGDEVFAGNAYQTTDVGGGVFRSTDGGTTWARIDPK
                     GRRLPSQRIWALAFDAHDQNVLFVGSHSAGVYVVPRMSDTLSSTQ"
     gene            822..>1518
                     /locus_tag="VGD38_00935"
     CDS             822..>1518
                     /locus_tag="VGD38_00935"
                     /inference="COORDINATES: protein motif:HMM:NF012784.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HEY0726603.1"
                     /translation="MSSEQPKLNNSEVNNNKTGEHPAQPQPNAMASQPARAPHTPEPD
                     EPDESRAAGDVDFGQLLDQFEQEQATLEEGEVVRGTVVGLSERGVVIDFGYKSEGIVN
                     PAEFTENGQLTVKAGDEVEVLVKSMETADGLPVLSRADAVRMKAWDDLDKAYREGTSV
                     KGRVIDRIKGGLRVDIDGIAAFLPGSQVDVRPVRNLDSLRNQIVEAKVIKLNRKRSNV
                     VLSRKAVIEQENTG"
BASE COUNT          349 a          448 c          436 g          285 t
ORIGIN      
        1 aagacgtggc ggcaggtcga cggcgttccg cgcgacgttc ctatcaatac gattgcgcag
       61 gatccgcagc gaccggatcg cgtttttgtc ggcaccaaac aggcgctgtt catgacgcac
      121 gatggtggtg aaacgtggag ccgtcgcggt ggcaatcttc cgttcggcga cttcacagcg
      181 attctgatca acccgcgcaa cggcgacgaa gtgtttgccg gtaatgctta tcaaacgact
      241 gacgtcggcg gcggagtttt tcgcagcact gacggcggca cgacgtgggc gcgcatcgat
      301 ccgaagggca ggcgtttgcc gagtcaacga atctgggcgt tggcttttga cgctcacgat
      361 caaaacgtgt tgtttgtcgg ttctcactcc gcgggtgttt acgtcgtgcc gcgcatgtcc
      421 gacacgcttt cgtctactca ataaaacgca tctgtaacaa tcgtgttctg cgactccgtt
      481 ttcagcaacc ggagtcgcag aaacctcgct gttgccttga catacgctca cacaggcgtg
      541 tacattgccg ccctacccgg taagaaggcg gcgggtgttt gtcggaccaa gcggggtaac
      601 tacggcaggg cggtaatcga aacaaattag ctcgacattt caaatccaaa cggctcgctt
      661 cctcgccagc cttcaactcc cgacaacgcc aaggtcaatc cagctaaagg ccgctgtaca
      721 ctgtctgaca gtcagcgaac acctgcgctg attgttccgg cttgtgaagc gcgataagat
      781 ctttcacgcg ctgaaaagtc accgggacta caggagtatg catgtctagt gaacaaccca
      841 agctgaacaa cagcgaggtc aacaataaca aaaccggcga gcacccggct cagccgcaac
      901 caaacgctat ggcttctcaa ccagcaagag caccacatac acccgaaccg gatgagccgg
      961 acgaatcgcg cgcagccggc gacgtcgact tcggacaact cctcgatcag ttcgagcagg
     1021 aacaggcgac cctcgaagaa ggcgaagtcg tgcgcggcac cgtcgtcggc ctgagcgaac
     1081 gcggtgtcgt catcgacttt ggctacaagt cggaaggcat cgttaacccc gccgagttta
     1141 ccgagaacgg ccagcttacc gtaaaagccg gcgacgaagt tgaagtgctg gtgaagagca
     1201 tggaaaccgc cgacgggctg cccgtgcttt cgcgcgccga cgctgtccgc atgaaggcct
     1261 gggacgatct cgataaggct tatcgcgaag gcaccagcgt caaaggtcgc gtgatcgatc
     1321 gcatcaaggg cggcttacgt gtcgacatcg atgggatcgc tgcgttcctg cccggttcgc
     1381 aagtcgacgt ccgcccggtg agaaatctcg acagcctccg caaccagatc gtcgaagcca
     1441 aggtcatcaa gctcaaccgc aagcgctcga acgtcgtgct ctcgcggaaa gcggtgatcg
     1501 agcaggagaa caccggcc
//
LOCUS       DASWTX010000059         1953 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_22452, whole genome shotgun sequence.
ACCESSION   DASWTX010000059 DASWTX010000000
VERSION     DASWTX010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1953)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1953)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1953
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22452"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..448
                     /locus_tag="VGD38_00940"
     CDS             <1..448
                     /locus_tag="VGD38_00940"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0726604.1"
                     /translation="VTLKKELDFLEKYVEIQRTLMRDRLNVRLSIDPETLDARVPNML
                     LQPLVENAIKHGISPRPEGGNIEVYARRLDGKLYVEITDDGLGMPEHGDGNGLGLVNT
                     RERLRHLYGEGQAFNLSSFPGRGVTIRISLPFREAGNDKDDSNADY"
     gene            426..1190
                     /locus_tag="VGD38_00945"
     CDS             426..1190
                     /locus_tag="VGD38_00945"
                     /inference="COORDINATES: protein motif:HMM:NF016296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HEY0726605.1"
                     /translation="MIRTLIIDDVQLARDRLKRCLADHPDVEVVGECDNGEKAVKAIR
                     ALAPDLIFLDVQMPALDGFGVLEALNTERMPAVIFVTAYNEYAIQAFEVNALDYLLKP
                     VDSERLGKAVQRAKAHLAQPAQGDGLDSRFRAMLEDIKTGSKFLKRLTIKLTGRTILL
                     PTDEIDWIETYGNYLKVHAGRESHLIRGTMQSLETKLDPEKFVRVHRSVIVNIEKVKE
                     IYPRSNGDQDLVLQNGQQLMLSRNYRDRFFAVLGDL"
     gene            1273..>1953
                     /locus_tag="VGD38_00950"
     CDS             1273..>1953
                     /locus_tag="VGD38_00950"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0726606.1"
                     /translation="MKVETQKILSLLLVLATFTTFVTAEAQNANTNASQTMAFVNVSV
                     IPFDRERILEGQTVIVRDGRIAEIGPASKTKAPAGAREIDGRGKFLMPGLADMHVHLF
                     AGTGQDDLAQQQMQLFLANGVTTIRNMIGKPEHVVLRDKVAKRELLGPTIYTAGPPLL
                     GNNVSTPEIAERVVTDQKKAGYDLLKVHEGLTPETYAAIASTAKRVGIPLAGHVTATV
                     GLKRALEAQ"
BASE COUNT          472 a          580 c          543 g          358 t
ORIGIN      
        1 agtgacgttg aagaaggagc tggattttct cgagaagtac gtcgagattc agcggacgct
       61 gatgcgcgat cgattgaacg tgcgattgag catcgatcct gaaaccctcg acgcgcgcgt
      121 gccgaacatg cttttgcagc cgctggtcga gaacgcgatc aagcacggca tctcaccgcg
      181 cccggaaggt ggcaacatcg aggtttacgc acgacgtctc gacggcaagc tttacgtcga
      241 gatcacggat gatggcttgg gcatgcccga acacggtgat ggcaacggtc tcgggctcgt
      301 caacacacgc gaacgcttgc gacatcttta cggggaaggg caggcgttca acctgagcag
      361 tttcccgggc aggggcgtga cgatccgcat cagtctgccg ttccgcgaag ctggaaacga
      421 caaggatgat tcgaacgctg attattgacg acgtgcagct cgcgcgtgac cggctcaaac
      481 gctgcctcgc ggatcatccc gacgtggagg tcgtaggcga gtgtgacaac ggcgagaagg
      541 ccgtcaaagc cattcgtgct ctggcgccgg atttgatttt tctcgacgtg cagatgccgg
      601 cgctggacgg cttcggcgtt ctcgaagcgc tgaacacgga gcgcatgccg gccgtcatct
      661 tcgtcaccgc gtacaacgaa tacgcgattc aggctttcga ggtaaacgcg ctcgattacc
      721 tgctcaaacc agtcgattcc gagcgtctcg ggaaagccgt gcagcgcgca aaagctcacc
      781 tggcccaacc cgcgcagggt gacggtctcg acagccgttt tcgcgcgatg ctcgaagaca
      841 tcaaaaccgg ctccaaattt ttaaagcgtc tgaccataaa actaaccggc cgcaccatcc
      901 tgttgccaac cgacgaaatc gattggattg aaacgtacgg caactatctg aaagtacacg
      961 caggccgcga gtcgcatcta atccgcggca cgatgcagtc gctggaaacg aaactcgatc
     1021 ccgagaaatt cgtccgcgtg catcgctcgg taatcgtcaa catcgagaag gtgaaagaaa
     1081 tctatccccg ttcgaacggc gatcaggacc tggtcctgca gaacggccag caactaatgc
     1141 tgagccgcaa ttatcgcgac cgtttcttcg ccgtgctcgg agacctgtga aaaagaactg
     1201 aacgtccccc gtaatgcact tctaatcaca atccggttgt tcgcggtgtt aatctcgata
     1261 gactctgccg ccatgaaagt tgaaacgcaa aaaatcctgt cgctcctact cgtcctcgct
     1321 acgttcacga cgttcgtcac agccgaagcg cagaacgcaa acacaaacgc gtcccagacc
     1381 atggctttcg tgaacgtcag cgtcatcccg tttgaccgcg aacgaatcct cgaaggccag
     1441 acggtcatcg tgcgtgacgg gcgcattgcc gaaatcggtc cggcgagcaa gacgaaagct
     1501 cccgccggcg cgcgcgaaat cgacgggcgc ggcaaattcc tgatgccggg tctcgcggac
     1561 atgcacgtcc acttgtttgc cggaacggga caggacgatc tcgcgcaaca gcagatgcag
     1621 ttgtttctgg cgaacggcgt aacgacgatc agaaacatga tcggcaagcc agaacacgtc
     1681 gtgttgcgcg acaaagtcgc aaagcgcgaa ctgcttggac caacgatcta cacggctggt
     1741 ccaccactgc tcggcaacaa cgtttccaca ccggaaatcg ccgagcgtgt cgtaaccgat
     1801 cagaaaaaag caggctacga cctactcaaa gttcacgaag gactaacacc ggaaacttac
     1861 gccgcgatcg catcgaccgc gaaacgcgtc ggcattcccc tcgccggaca cgtcactgca
     1921 accgtcggcc tcaagcgcgc gctggaagcg caa
//
LOCUS       DASWTX010000060         3103 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_152376, whole genome shotgun sequence.
ACCESSION   DASWTX010000060 DASWTX010000000
VERSION     DASWTX010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3103)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3103)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3103
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152376"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1521
                     /locus_tag="VGD38_00955"
     CDS             <1..1521
                     /locus_tag="VGD38_00955"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEY0726607.1"
                     /translation="ANLRKEGCLRRFLCTAVFIIAVCLFASASFHSLQAATLPAGFTE
                     TTITGISGPTAMEIAPDGRIFVCEQGGRLRVIKNGALLATPFLTVNVDSSGERGLLGI
                     AFDPSFGVLNNFVYVYYTVPSTPRHNRVSRFTANGDVAVAGSETVILELDNLSGATNH
                     NGGAIHFGPDGKLYVAVGENATTSNSQTLSNRLGKVLRINSDGSIPTDNPFFNTATGA
                     NRSIWALGLRNPFTFAFQPGTGRMFINDVGQNTWEEINDGIAGSNYGWPTTEGPTSNP
                     AFRSPLFAYQHGGSPTTGCAIAGGAFYNPLNVTFPSSFVGKYFFADLCTGWIRTFEPA
                     TGTAGDFASGVVQPVDLKVGADGSLYYLSINFGNGFVSRVQFNGPTNPAPVIATEPNT
                     DSAVALESVWLMRDPFPLTTPFNLSTDGRTRLSLFVMNLDLQPGETAASVTARLEDAS
                     LKVYPLTVETVGKVPGFDWLTQVIVRLPNDTPPAQTLLVSVSLRGQTSNKARIRMK"
     gene            complement(1555..1908)
                     /locus_tag="VGD38_00960"
     CDS             complement(1555..1908)
                     /locus_tag="VGD38_00960"
                     /inference="COORDINATES: protein motif:HMM:NF036547.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY0726608.1"
                     /translation="MMSSSFHWETNGNSAAPQEAPPRRSELARHNLDNLREAALTVLK
                     ELESLTNSQSEPDRKLGLQEEVQRYEIELIRNALQKTRGNQRQAAKLLGVKVTTLNCK
                     IKRYGIATSPTDVHE"
     gene            complement(2059..>3103)
                     /locus_tag="VGD38_00965"
     CDS             complement(2059..>3103)
                     /locus_tag="VGD38_00965"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HEY0726609.1"
                     /translation="TKIAAAIAAGKTKAVNGRFWIAYQFEVRPGVAVDFEIVDSAGGI
                     YISSDGTSMMFDQRNETRELGLFLMYDTAQESFIRADIYNLRRTHEYGNYPVYWAGRI
                     SNDESLNFLKSIVDSPAPQMNRLAERAMFAIALHDDVRVDALLTDMIRRSLAEPLRSR
                     AIHWLGNTPETTAKNVMFIEIVRNDMESVDARNAAMSALAMSRSAGILPVLENLFETM
                     NTRELKRRALTGISRNDDNEAAATYLIGVAQSDKDMEMRKSAIANLGRIPGEKSLVAL
                     TGTVDGNADIELQKQAVVALGRRPKDEAIPILIRTARSHPKMPVRKVAVQVLGQTGDE
                     RAVLFFRELLTKD"
BASE COUNT          619 a          923 c          860 g          701 t
ORIGIN      
        1 gccaacttac gaaaagaggg ttgtttgcga cgttttctct gcaccgctgt ctttataatc
       61 gcggtctgcc tgttcgcgtc cgcgagtttt cattcacttc aggccgcgac gctgccggcc
      121 ggtttcacag aaacaacgat cacgggcatc tctggtccaa cggcgatgga gatcgcgccc
      181 gacggccgca tcttcgtttg cgaacaaggc ggacggctgc gcgtgatcaa gaacggcgca
      241 ctcctcgcaa cgccgtttct gacagtgaac gtcgattcaa gcggcgaacg tggtctgctc
      301 ggaatcgctt tcgatccgtc tttcggcgtg ctgaataatt ttgtctacgt ctattacacg
      361 gtgccttcga ctccgcggca caaccgcgtc agccgtttca ccgcaaacgg cgacgtagcc
      421 gtcgcgggca gcgaaacagt catactcgag ctcgacaacc tgagcggcgc caccaaccac
      481 aacggcggcg caatccactt tggaccagac ggaaagctgt acgtcgccgt cggcgaaaac
      541 gccacgactt caaactcgca aacactcagc aaccgcctcg gaaaagtgct ccgcatcaac
      601 tccgacggca gcattccaac cgacaatccg ttcttcaaca cagccaccgg cgcgaaccgc
      661 tcgatctggg cactcggcct gcgcaatcct tttacgtttg catttcaacc cggcaccggc
      721 cgcatgttca tcaacgacgt cggccaaaac acgtgggaag aaatcaacga cggcatcgcc
      781 ggttcgaatt acggttggcc cacgaccgaa ggcccgacgt caaacccggc ttttcgatca
      841 cctttgttcg cgtaccaaca tggcggcagt ccaacgaccg gctgcgcgat cgcgggcggc
      901 gctttttaca atccgctcaa cgtgacgttt ccttccagct tcgtcggcaa atacttcttc
      961 gccgatcttt gcaccggctg gatacgcaca ttcgaacccg caaccggaac ggcgggagac
     1021 ttcgcgagcg gcgtcgtgca gccggtcgat ctgaaagtcg gcgctgacgg aagtctttac
     1081 tacttgtcga tcaacttcgg taacggtttc gtctcgcgtg ttcagttcaa tggtccaaca
     1141 aaccctgcgc ccgtgatcgc caccgaaccc aacaccgaca gcgcggtcgc actcgaatca
     1201 gtctggctca tgcgcgatcc gttcccgcta acgacgccgt tcaacctcag cactgacggc
     1261 cgcacgcgtt tgagtttgtt tgtcatgaat ctcgacttgc agccgggtga aaccgctgcg
     1321 agcgtcacag cgcgactcga agacgcgtcg ctcaaggttt atccgttgac ggtcgagacg
     1381 gttggcaagg ttcccggctt cgactggctg acgcaggtga tcgtgcgttt gccaaacgac
     1441 actccgcccg ctcagacgct cctggtcagc gtcagcttgc ggggacagac gagtaacaaa
     1501 gcccggatca ggatgaagtg agccacagat aatcacgaac caacactgat cgtgttactc
     1561 gtgaacgtct gttggcgaag tggcgatgcc ataacgcttg atcttgcagt tgagcgtcgt
     1621 cactttaacg ccgagcagtt tcgcggcctg gcgttgattg ccgcgcgtct tctgcaacgc
     1681 gttgcgaatc agttcgatct catagcgctg gacttcttcc tgtaatccaa gcttgcggtc
     1741 tggctctgac tggctgttgg tgagagactc aagttccttg aggacggtca gggctgcctc
     1801 tcgtaaatta tctaaattgt ggcgggctaa ttccgatctt ctgggtggcg cctcttgcgg
     1861 cgcggcagaa ttaccattcg tctcccaatg aaaagaactg ctcatcattt cctccctcgg
     1921 ctatccggct cgaacaggtc ccgtctttct gggtcatgcg gggagcaacg cagtccatca
     1981 gacttgggga gatttgttta accagtttct tgcccagatt ccttacccga attccttgct
     2041 cgtcgacttg cagtacgttc agtccttggt tagaagttct ctaaaaaaca atacggctcg
     2101 ctcatcgccc gtttggccaa gcacctgaac cgccactttg cggacgggca tcttcggatg
     2161 gctgcgggct gtgcgaatca gaatcggtat tgcttcgtct ttagggcggc ggccgagcgc
     2221 gaccactgcc tgcttctgca attcgatgtc tgcattgccg tcaacggtgc ctgtcaaagc
     2281 aactaaactt ttctcgccgg ggatgcggcc gaggttggcg atggcgctct tgcgcatctc
     2341 catgtcctta tctgactggg cgacgccgat gaggtaagtt gccgcagcct cgttatcgtc
     2401 gttgcggctg atgccggtga gcgcgcggcg cttgagctcg cgcgtgttca tcgtttcgaa
     2461 gaggttttcg aggaccggca ggatgcccgc cgagcggctc atggcgagcg ccgacattgc
     2521 agcgtttcgt gcatcaacgc tttccatgtc attgcgcacg atctcgatga acatcacgtt
     2581 cttcgccgtc gtctccggag tgttgcccaa ccaatgaatc gcgcgcgagc gcaacggctc
     2641 tgcgagcgaa cggcgaatca tatcggttaa caatgcatca acacgcacgt cgtcgtgcaa
     2701 agcgatggca aacatcgcgc gctcggcgag acggttcatt tgcggcgcgg gcgagtcgac
     2761 gatcgatttc agaaagttga gactctcgtc gttgctgatg cggccggccc agtaaacggg
     2821 atagttgccg tattcgtgcg tgcggcgcag gttgtagatg tcagcgcgaa tgaacgactc
     2881 ctgcgcggtg tcgtacatga gaaacagtcc gagctcgcgt gtttcgttgc gctggtcgaa
     2941 catcatcgaa gtgccgtcgg aggagatgta gatgcctccg gcgctgtcga ctatttcaaa
     3001 atcaactgcg acgcctggtc taacttcaaa ctggtacgct atccagaagc gcccgttaac
     3061 ggctttcgtc ttgccggcgg cgatggcggc ggcaatcttg gtt
//
LOCUS       DASWTX010000061         1553 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_347659, whole genome shotgun sequence.
ACCESSION   DASWTX010000061 DASWTX010000000
VERSION     DASWTX010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347659"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            282..908
                     /locus_tag="VGD38_00970"
     CDS             282..908
                     /locus_tag="VGD38_00970"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEY0726610.1"
                     /translation="MADQKQTELASAPTQQLPAIGAAQEDSPKFTAEQKHIEDIIDDD
                     APLIVILSELVLMIEAQSPEMLCSILLLSDDGNHVRHAVAPSLPESYTKAIDGSPIGP
                     KHGSCGTAMFRGKPVVVSDIATDPLWDDYREFARMIDMAACWSTPILSSKGKVLGSFA
                     MYYREPRGPKPAEQRLTDVATKLAARAIEHAVARERAIGGGVSGVSSF"
     gene            910..>1553
                     /locus_tag="VGD38_00975"
     CDS             910..>1553
                     /locus_tag="VGD38_00975"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEY0726611.1"
                     /translation="MVNDNTARARQAYLFDLDGTLIDSVYQHVLAWREALEAGGIHLA
                     VWRIHRQIGMSGGLFVNALARETGHEVSPEEAERIHQVHGEAFRRYASQVRPLPGASE
                     LLAYLTKVGVPWAIATSGRLESASLSLHLLGIEEEVPIITRDMVQHAKPDPDLFLAAA
                     DKLGVSIEDSVVVGDSIWDLLAARRARALGVGLLSGGYGREELERAGAYRVYNDP"
BASE COUNT          306 a          427 c          512 g          308 t
ORIGIN      
        1 cggtatgccg ggccagccgg gttcggtgcg caggatccag ccgttcttct tcatctgttg
       61 cggattgtcg taactgaaat cgtcgaaaag aatttgtgtt ttcggcggcg tggctacgcc
      121 aatcgagaag agcgcgatta cgctgagtgc gatggtaaaa gttttcatca tggctactgg
      181 aggcgactat cctaacccgc gccactggtt cgcgccagca caatgtatgg cgttggcgag
      241 tcgcccggcg tagaattgcc gcacaaggag agtacaaacc aatggccgat cagaaacaga
      301 ccgaactcgc ttcggctccc acgcaacaac tgcccgcgat cggtgccgcc caggaagaca
      361 gcccaaaatt caccgcggaa cagaagcaca tcgaagacat aatcgacgac gatgcgccgc
      421 tgatcgtgat tctttcggag ctggtgttga tgatcgaggc gcagtcgccg gagatgcttt
      481 gctcgatact gctgctcagc gacgacggca atcacgtgcg tcacgcggtt gcgccgagcc
      541 tgccggagag ttacacgaaa gcgatcgacg gtagtccgat cgggccgaaa cacggctcgt
      601 gcgggacggc gatgttccgc ggcaaacccg ttgtcgtcag tgacatcgcg acggatccgc
      661 tctgggacga ttatcgtgag ttcgcacgca tgatcgatat ggctgcgtgt tggtctacgc
      721 cgatcctgtc gagcaaaggg aaggtgcttg gttcgtttgc gatgtattac cgcgagccgc
      781 gtggtccaaa gccggccgaa cagcgcctca ccgatgtggc gacgaagctg gcggcgcggg
      841 cgattgagca cgctgtggcg cgcgaacgcg cgatcggtgg cggtgtttca ggcgtgagca
      901 gtttttgaga tggttaacga caacaccgca cgggcgcgtc aagcctacct gttcgatctc
      961 gacggcacac tcatcgacag cgtgtaccag cacgtgctcg cgtggcgcga ggcattagag
     1021 gctggtggaa ttcatcttgc ggtctggcgt attcaccggc agatcggaat gagtggcgga
     1081 ctgttcgtca acgcgctggc gcgcgagacg gggcatgaag tctcgccgga agaagctgag
     1141 cggattcatc aggtacacgg cgaagcgttc aggcgttatg cgtcgcaggt gcggccgctt
     1201 cccggggcct cggagctgct ggcgtatctc acgaaggtcg gtgtgccgtg ggcgatcgcg
     1261 acgagtgggc gattggagag tgcgagcctg tcgcttcatc tgctagggat cgaagaggaa
     1321 gtcccgatca tcacgcgcga catggtccaa catgcgaaac ccgatccgga cctgtttctc
     1381 gctgccgctg acaaactcgg cgtttcgatc gaggattcag tggtggtggg agacagtatc
     1441 tgggatctgc tcgcagcgcg tcgcgcgcgt gcgctcggcg ttggcctgct ctcaggcggt
     1501 tacggccgtg aagaactcga gcgcgcgggt gcgtatcgcg tctacaacga ccc
//
LOCUS       DASWTX010000062         1913 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_152390, whole genome shotgun sequence.
ACCESSION   DASWTX010000062 DASWTX010000000
VERSION     DASWTX010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1913
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152390"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(147..1289)
                     /gene="menC"
                     /locus_tag="VGD38_00980"
     CDS             complement(147..1289)
                     /gene="menC"
                     /locus_tag="VGD38_00980"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: protein motif:HMM:TIGR01928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HEY0726612.1"
                     /translation="MRLSEEHFSPLIIQSIELREIRLPLINFFETSFGRTTERRLVLA
                     RVRDADGAEGWGECTAGEGPFYSDEWTDSVWDTLCEFLGPMVLGREANSAADVFALMK
                     PVRGHRMAKATIETACWDLEAKKLGVPLWKHLGGTRHEIASGVSIGIQDSPEILLQKI
                     RKEVDAGYQRIKIKIKPGWDSQIVALVRKEFPDIRLMGDANSAYTLADVPLFKELDRF
                     NLMMLEQPLAHDDIFDHAQLQQQINTSICLDESIRTPEDATHAIALGSCRIINVKLGR
                     VGGHTQAKRVEQVARENEIPVWCGGMLESGIGRAHNIAMATLAGFSLPGDVSASARYW
                     EEDIIEPPVMVSSKGTITAPDAPGIGFNLNLPRIDALTVRKQTINL"
     gene            1567..>1913
                     /locus_tag="VGD38_00985"
     CDS             1567..>1913
                     /locus_tag="VGD38_00985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726613.1"
                     /translation="MAAIAVVLLVSVASRRYVATMAPAPIPGSSSTVFINEIHYDNSG
                     TDTGEFIEIAGPAGTNLTGWRIELYNGNGGARYDNDALSGTIPSQQGGYGTVSLSYPT
                     DGIQNGSPDGIALV"
BASE COUNT          402 a          550 c          521 g          440 t
ORIGIN      
        1 atcaaccact gcgcggctac cctctacatc gccggacggc gattcgactt ccaccagcgc
       61 gcgtacgaac gactcaacgt cattctgccg ctcgcgaaac cggttcagaa tctggttcgc
      121 caaagaagat gaaataagct ggcccgtcat aaattgatcg tttgcttgcg cactgtcaga
      181 gcgtcgatgc gcggtaggtt aagattgaat ccgatacccg gcgcgtccgg cgccgtaatc
      241 gttcctttcg agctcaccat caccggcggc tcgatgatgt cttcttccca ataacgcgca
      301 ctcgccgaca cgtcaccggg caaactgaaa ccagcaagcg tcgccatcgc gatattgtgc
      361 gcgcgtccga tgcccgactc caacatgccg ccacaccaga ccggaatctc attttcacgc
      421 gcgacttgct cgacacgttt cgcttgcgtg tgcccgccga cgcgcccgag tttcacgttg
      481 atgatcctgc acgaaccgag cgcgatcgcg tgtgtcgcgt cttcaggagt gcgaatcgac
      541 tcgtccaggc agatggaagt atttatctgt tgttgcaact gcgcgtgatc gaagatgtcg
      601 tcgtgggcca acggctgttc gagcatcatc aagttgaagc gatcgagttc cttgaagagc
      661 ggcacgtcgg cgagcgtgta agctgagttg gcgtcgccca tcaaacgtat gtcgggaaac
      721 tccttgcgca ccagagcgac aatttgggag tcccagccag gtttaatttt aattttgatg
      781 cgctgatagc ccgcgtccac ctctttgcgg attttttgta aaaggatttc aggcgaatcc
      841 tgaatgccga tcgagactcc cgacgcgatc tcgtgtcgcg tgccgccgag atgtttccac
      901 agcggcacgc cgagtttctt cgcttcgagg tcccagcacg cggtctcgat cgtggccttg
      961 gccatgcgat ggccgcgcac gggtttcatc aacgcaaaca cgtccgcggc gctgttggcc
     1021 tctctgccca ggaccattgg accaagaaac tcgcacagcg tgtcccagac gctgtcggtc
     1081 cattcgtcgc tgtagaacgg tccttcgccg gccgtgcatt cgccccaacc ttcagcgccg
     1141 tcagcgtcgc ggacgcgagc gagcacgagg cggcgttcgg tggtgcggcc gaagctggtt
     1201 tcgaaaaagt taatcagcgg caggcggatt tcgcgcagtt caatcgactg gataatcaat
     1261 ggcgagaagt gttcctccga tagacgcatt atgcctttct aaggggcagt tgtcagcctc
     1321 gtgttgaagg tgatgttaag actttgggaa atctgcgggc ggcgagtgaa tacggtagtt
     1381 ttgcggcttg acccaccccg gtagaactga taaaaggcac gcacatttcc ctgccggcct
     1441 caaggtacct ccggtattcc tctcaataaa cgtgcggaaa agtgctgtat ttattttgtt
     1501 tagaaaggtt cttttatgcc gactcttgcc cctttgagac cttatacacg aactctgttc
     1561 gtggtaatgg ctgccattgc agttgtttta ctcgtcagcg tggcctcacg aaggtacgtc
     1621 gcaacgatgg ctccggcgcc gattcccggt tccagttcaa ctgtcttcat taatgaaatt
     1681 cactacgaca actccggcac tgacaccgga gagtttatcg aaatcgctgg tcctgcaggg
     1741 acgaacctga ccgggtggcg catcgaactc tacaacggca atggcggagc acgctacgac
     1801 aacgacgcac tgtcgggcac cattccatca caacaaggtg ggtatggaac ggtctcgctt
     1861 tcgtatccga ctgacggcat tcaaaacggt tcaccagacg gaattgcgct ggt
//
LOCUS       DASWTX010000063         3522 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_66023, whole genome shotgun sequence.
ACCESSION   DASWTX010000063 DASWTX010000000
VERSION     DASWTX010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3522
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66023"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..211
                     /locus_tag="VGD38_00990"
     CDS             <1..211
                     /locus_tag="VGD38_00990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726614.1"
                     /translation="FHRKYIADALHVAIASFHKIDYLVTWNFGHLANVRRQARIRLFN
                     TAAGFYVPMIVTPEFLVSEATERVV"
     gene            259..465
                     /locus_tag="VGD38_00995"
     CDS             259..465
                     /locus_tag="VGD38_00995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726615.1"
                     /translation="MEVLHSIREEMSREADYDVDLFAEMVRSGVQPLHGPQRVIRGFR
                     TRAPRAENGNGNTAKRRQRKRSAQ"
     gene            494..1276
                     /locus_tag="VGD38_01000"
     CDS             494..1276
                     /locus_tag="VGD38_01000"
                     /inference="COORDINATES: protein motif:HMM:NF024399.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3881 family protein"
                     /protein_id="HEY0726616.1"
                     /translation="MNPTFETIGLEVSSEKAFNYLAERAGDQGEATQLNRRGAVLHGR
                     CWKLGEGLEVWTVLYESGSDVFYADCRPGFRARYIQTIAPWALTEYDEEGEAVIHGYR
                     EGTDCEVLFELQNLTEVGPKGFGAQELHIGLCGLAYRARVRRSKVDTHWMPLEKAAPA
                     RAAHENDWSLCGRIIAFKPLRNPLSGGELFWIHLDLDKIKLEVLVNRRALRGELAVGA
                     SLEAEVWLQGHVLDEHALRSRYEGVDLAYHRSSFWSSLRRRN"
     gene            1304..1876
                     /locus_tag="VGD38_01005"
     CDS             1304..1876
                     /locus_tag="VGD38_01005"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEY0726617.1"
                     /translation="MKRVLVVVLLVLTLLLAAYLFNQYWTHRFDALIARQAAIYRVDP
                     DLVWSIMYEETYFSPWKTGADGEIGLMQVTPTVGREWATATGMRELERQMASDPESLL
                     RDPERNIQIGCWYLEKIYEQFQDVPDVETRMVAGYNAGPSRAVEWNRVAEGAPPPSGA
                     EFIKRIDIPSTRAYVISIMERYRQLKNAKR"
     gene            1873..3180
                     /locus_tag="VGD38_01010"
     CDS             1873..3180
                     /locus_tag="VGD38_01010"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0726618.1"
                     /translation="MTTIYSARWVLPTASSAPIEHGAVVVDGALIVGVGAAVDLRARF
                     PEARVEDFGQSVILPGLVNTHTHLELTALRGYLENEESNFFAWLRKLTLARLERMTPE
                     DIRVSATWGACEAVRAGITCVGDASDSAMMSMLALRDVGLRGVVFQESFGPDRRLVEE
                     NFAKLKGKVEQLREVETDLVRVGVSPHAPYSVCRPQLELIADFAISERLPLMMHAAES
                     AAEESFLRDGTGLFAEGLAKRGIEWTPPGISTIQYLRLAGILETQPLLAHCIRVDDED
                     IETLKQTGSKVAHCPKSNAKLGHGRAPLAKFLAAGVIVGLGSDSVASNNTCDLLEEAR
                     FALFSAQNPSLKASHLLAAATSGEILSEGAQAELVVVGLDGAHQLPVYDPTTTLVFSS
                     SGRDVLLTVIAGREVYRDKRVLSVDEDRLRARLNEIAHRLLSE"
     gene            complement(3214..>3522)
                     /locus_tag="VGD38_01015"
     CDS             complement(3214..>3522)
                     /locus_tag="VGD38_01015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726619.1"
                     /translation="GFLALAEYDKSSNGGNGNGRIDIADAIFSQLRLWQDANHNGFSE
                     ANELRTLGAFGITGIDLDYKTSKRTDAFGNKFRYRAKVYDAGSVHSGRWAWDVFLVVQ
                     "
BASE COUNT          713 a          913 c         1095 g          801 t
ORIGIN      
        1 ctttcatcgc aagtacattg ccgacgcgct gcacgtagcg attgcgtcgt ttcacaagat
       61 cgattatttg gtaacgtgga acttcggtca tctggcgaac gttcgacgac aggcgcgcat
      121 tcggttgttc aatacagcgg ccgggtttta tgtgccgatg atcgtgacgc cggagttttt
      181 ggtttcggaa gcaacggaga gggttgtata ggtcatatag gacatattag gtttcccatg
      241 tatcgtcgcc caagattttt ggaagtattg cactcgattc gcgaagagat gtcgcgcgaa
      301 gctgattacg acgtcgactt gtttgcggag atggtccgat cgggtgtgca gccgttgcat
      361 ggcccacagc gtgtgatccg cgggttcagg acgcgggcgc ctcgtgcaga aaatggcaac
      421 ggcaacaccg ccaagcgtag acagcggaag cggagcgcgc aataatgcat ccgtccaaag
      481 attactgata cctatgaatc ctactttcga aacgatcggt ctggaggttt caagcgagaa
      541 ggctttcaac tacctggcgg aacgcgcggg tgatcagggc gaagcaacac aactgaacag
      601 gcgtggcgcc gtgttgcatg gccgttgttg gaagctcgga gaaggtcttg aagtttggac
      661 cgttctttac gaatcgggca gcgacgtgtt ctacgccgat tgccgtccgg gttttcgtgc
      721 tcgctacatc cagacgatag cgccgtgggc gttgactgag tacgacgaag aaggcgaggc
      781 agtcattcac ggttatcgtg aaggcaccga ctgcgaagtt ctgtttgagt tgcagaacct
      841 gacggaagtt gggccaaagg gttttggcgc gcaggagttg cacattggtt tgtgcggtct
      901 tgcgtatcgc gcgcgcgtgc ggcgtagcaa ggtcgacacg cactggatgc cgctcgagaa
      961 ggcggccccg gctcgcgccg cgcatgagaa cgattggagt ttgtgcggcc gcatcatcgc
     1021 tttcaagcct ttgcgaaatc cgctttccgg cggcgagctg ttttggattc atctcgacct
     1081 cgacaagatc aagctcgaag tgctggtgaa ccgtcgcgcg cttcgcggtg aactggcggt
     1141 cggcgcgagt ttggaagcag aggtttggtt gcagggacac gtgcttgacg aacacgcgtt
     1201 gcgctcgcgc tacgaaggcg tcgacctcgc gtatcaccga tcgagtttct ggtcgtcact
     1261 gagaagaagg aactagctcc ccgaaatcat tctcctgaac tggatgaaac gagttctcgt
     1321 cgttgttctc ttagtcctca cgctgctgct cgccgcctat ctttttaatc aatactggac
     1381 acatcgtttc gacgcgctga tcgctcgcca ggctgcgatc tatcgcgtcg atcccgatct
     1441 cgtgtggagc atcatgtatg aagagacata tttcagtccg tggaagactg gtgctgatgg
     1501 tgagattggt ttgatgcagg tgacgccgac ggtcgggcgt gaatgggcca ccgcgacggg
     1561 catgcgcgag ctcgaacggc agatggcgag cgatcccgaa agcctgttgc gcgatccgga
     1621 aaggaatatt cagatcggtt gctggtatct ggaaaagatc tacgagcagt ttcaggacgt
     1681 gcctgatgtc gagacgcgca tggtcgcggg ttacaatgcg gggccgagtc gtgcggttga
     1741 gtggaaccgt gttgccgagg gcgcgccgcc gccgagtggc gcggagttca tcaaacgcat
     1801 cgacattcct tccacgcggg cgtatgtgat ttcgatcatg gaacgttacc gtcaactgaa
     1861 gaacgcgaaa agatgaccac gatctattcc gcgcgttggg tgttgccgac ggcgtcttca
     1921 gcgccgattg agcacggtgc ggttgtcgtt gatggtgcgt tgatcgttgg cgttggcgct
     1981 gcggttgatc ttagggcgcg gtttcccgag gcgcgtgtcg aagattttgg tcagtcggta
     2041 atccttcctg gtttagtcaa cacgcacacg catctcgagc tcaccgcgct gcgtggttat
     2101 ctcgaaaacg aagagagcaa tttctttgcg tggttgcgga agctgacgct tgcgcggctg
     2161 gagcgcatga cgccggaaga cattcgtgtg tctgcgacgt ggggtgcgtg tgaagctgtg
     2221 cgggcgggga tcacgtgcgt gggcgacgcg agtgattcgg cgatgatgag tatgctggcg
     2281 ttgcgtgacg tgggattgcg tggcgttgtg tttcaggagt cgttcgggcc ggatcggcgt
     2341 ttggttgagg agaattttgc gaagttgaag gggaaggttg aacagcttcg cgaggttgaa
     2401 actgacctcg tgcgcgttgg cgtttcgccg cacgcgccgt actcggtttg ccggccgcag
     2461 cttgagctga tcgcagactt tgcgatttcg gagcggctgc cgttgatgat gcacgccgct
     2521 gagtcggcgg cggaagagtc gttcctgcgt gatgggacgg gattgtttgc cgaaggactc
     2581 gcgaaacgcg gaattgaatg gacgccgccg ggaatttcaa cgattcaata cttgcgcctc
     2641 gcgggcattc tcgaaacgca gccgttgttg gcccactgca tcagagtcga cgacgaagac
     2701 atcgagacgt taaaacaaac cggcagcaag gtcgcgcact gtccgaagtc aaacgcaaag
     2761 ctcggccacg gccgcgcacc gctcgcgaaa tttctggcgg cgggcgtcat agtcggactc
     2821 ggcagtgatt cagtggcgag caacaacacc tgcgatctcc tcgaagaagc gcgattcgct
     2881 cttttttccg cccaaaatcc ctctctgaaa gcatcacatc tattggcggc tgcgaccagt
     2941 ggcgaaattc taagcgaagg tgctcaagcc gagctggtcg tggtgggcct ggacggtgcg
     3001 caccagctac cggtttacga tccgacaacc actttagtct tctcatcctc cggccgcgac
     3061 gtacttttga ctgtgatcgc cggccgcgaa gtgtatcgcg acaagcgagt cctgagcgtc
     3121 gatgaagacc gtctgcgcgc gcgtctcaat gaaatcgctc acagactgct tagtgaataa
     3181 cactcaaaaa gcccgctgct acttcgcggt tccctactgg accaccaaga acacatccca
     3241 agcccaacga ccggaatgca cgctgcccgc atcataaacc ttggcccggt agcgaaactt
     3301 attgccaaat gcgtccgtcc gtttcgacgt tttgtaatcc agatcaattc cggtgatccc
     3361 gaaggccccc agggtgcgca actcgttggc ctcagagaaa ccgttgtggt ttgcatcctg
     3421 ccagagcctc agttgcgaga agatcgcatc ggcgatgtca atccggccgt ttccgttacc
     3481 gccgttgctg gacttatcgt actccgccaa tgccagaaat cc
//
LOCUS       DASWTX010000064         2564 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_282622, whole genome shotgun sequence.
ACCESSION   DASWTX010000064 DASWTX010000000
VERSION     DASWTX010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2564
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282622"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..200
                     /locus_tag="VGD38_01020"
     CDS             <1..200
                     /locus_tag="VGD38_01020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726620.1"
                     /translation="MDRIVDAYARAINVAGTDPKTEQSRKDWMAQLTNYYKFRNNGDE
                     TGLPQFIANAMQKPLPPKPAL"
     gene            202..627
                     /locus_tag="VGD38_01025"
     CDS             202..627
                     /locus_tag="VGD38_01025"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEY0726621.1"
                     /translation="MVKRIEGNVTDLETLRRLGRAREFIDHCYDHPLSLEQISEKACF
                     SRYHFLRLFRQAFNKTPHQYLIERRIERAKELLGADELRVTDVCFEVGFQSLGSFSSL
                     FHKYVGHAPITYREKVRQREEAKRQVPGCFLVMYKLESV"
     gene            1035..1445
                     /locus_tag="VGD38_01030"
     CDS             1035..1445
                     /locus_tag="VGD38_01030"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY0726622.1"
                     /translation="MIRRMSHATIFVNNQDEALEFYREKLGFKVHTDAMVGEHFRWLT
                     ICTNDQPDFEIILMEPKPGMLMDDATSQSLRAIMSKGVLGAGVFNTDDCRGTYEELKA
                     KGVQFLSEPTERPYGIEAVFKDNSGNWFSLTQPR"
     gene            1458..1973
                     /locus_tag="VGD38_01035"
     CDS             1458..1973
                     /locus_tag="VGD38_01035"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY0726623.1"
                     /translation="MRLKWTDRKFEFNYPTELYPEIIERVRGASARLDEYLQSAPAEI
                     LTRRHDGHWSIQENAAHLYDLDALTLERIEQYVAGVPVLHAVDITNRKTSEANYNSVP
                     AAEISRLFRQRRVEVVNRLDSLDAEMFARSAIHPRLNIPMRLVDFVFFEAEHDDYHFT
                     RINELLKLFGG"
     gene            1973..>2564
                     /locus_tag="VGD38_01040"
     CDS             1973..>2564
                     /locus_tag="VGD38_01040"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY0726624.1"
                     /translation="MRKLTVALAFLLSFSFNSHAQQLSLDAMIERDLASLLSTYKALH
                     AAPELSHREEKTSAFVAGELRKLGFTVTERIGKFQNAQWTGYGVVGVLKNGTGPTVLV
                     RTELDALPVEEKTGVPYASQVKTKNDAGVEVSVMHACGHDIHMTSFLGTAKMLSELKS
                     RWSGTLVMLGQPAEETGDGANAMLRDNLYTNFPKPDY"
BASE COUNT          601 a          754 c          694 g          515 t
ORIGIN      
        1 tgatggaccg catcgtcgac gcgtatgcac gggcgatcaa tgtggcgggg actgatccca
       61 agaccgagca gagccgtaaa gactggatgg cgcagttgac gaattactac aagttccgga
      121 acaacggcga cgaaacgggt ctgccgcagt tcatcgcgaa tgcgatgcag aaaccgctgc
      181 cgccgaaacc cgcgctgtag gatggttaag agaattgaag gaaacgtgac cgacctcgag
      241 acgctgcggc gtctcgggcg ggcacgcgag ttcatcgacc actgctacga tcatccgctt
      301 agtctcgagc agatttctga gaaggcttgc ttttcgcgtt atcacttcct gcggctgttt
      361 cgacaggctt tcaacaagac cccacaccag tatttgatcg agcggcgtat tgagagggcg
      421 aaagagttgc ttggcgccga tgagctgcgt gtgacggatg tttgtttcga agtgggattt
      481 cagagtttgg gatcgttcag cagtctcttc cacaagtacg tcggccacgc gccgatcacc
      541 taccgtgaaa aagtacgcca gcgcgaggaa gcgaaacgcc aagttcctgg ctgttttctc
      601 gtgatgtaca aacttgagtc ggtgtaggtt gggtatgaac gatccaccga cttcgtcggt
      661 gggattgcac gccccgtcta atccccgagt aggttgggta tgaacaatcc accgactccg
      721 tcggtgggat tacacgtcct gtctagccct gtgtaggtgg gatataaagt accaccgact
      781 tcgtcggtgg gatttgcgcc ccctgtctgg cctccctaac cccaagtagc tccggtctga
      841 aaatacagac gatgtcggtc tgaataccac cgacaaggtc ggtggtttct tcatatccta
      901 cctacacacg acccatagcg gcgtgcaatc ccaccgacaa ggtcggtgga tcgttcatac
      961 ccaacctaaa aagcaatttt caagaagcgc tactccgtcg tctacaagta tccttacacc
     1021 cgaggagaaa cacgatgata agacgaatgt cccacgccac gatttttgtg aacaaccagg
     1081 acgaggcgct cgagttttat cgcgagaagc tcggttttaa ggtccatacc gacgccatgg
     1141 tcggcgaaca cttccggtgg ctcaccatct gcaccaacga ccaacccgat ttcgagatca
     1201 tcctcatgga gcccaagccc ggaatgctca tggacgacgc gacgtcgcaa tcgctgcgcg
     1261 cgatcatgtc gaaaggcgta ctcggcgcgg gcgttttcaa caccgacgat tgccgcggca
     1321 cgtacgaaga gctcaaagcc aaaggcgtgc agtttctttc cgaaccgacc gaacgcccct
     1381 acggcatcga agccgtgttc aaagacaatt ccggcaactg gtttagcctc actcagccac
     1441 ggtaatatag cggcgctatg cgcctcaaat ggaccgatcg caaattcgag tttaattacc
     1501 caacggagct ttatcccgag atcatcgagc gcgtgcgcgg cgcgtccgca cgcctcgatg
     1561 agtatctcca gtccgcgccc gcggaaatac tgacgcgtcg ccacgacggc cactggtcca
     1621 tccaggaaaa cgccgctcac ctgtacgacc tcgacgccct gacgctcgag cgaatcgaac
     1681 agtacgtcgc gggcgtgcct gtgttgcacg cagtcgacat caccaacaga aagaccagcg
     1741 aagccaacta caacagcgtg cccgccgcgg aaatcagtcg cttattccgc cagcggcgcg
     1801 tcgaagtcgt aaaccgttta gacagcctcg acgccgagat gttcgcgcgc agcgcaatac
     1861 atccgcgcct aaacattccc atgcgcctcg tggattttgt attcttcgaa gccgagcacg
     1921 acgattacca cttcactcgt atcaacgaac tcttaaagct gttcggagga taatgcgcaa
     1981 actaacagtc gccctggctt ttcttctctc cttttcattc aacagccacg ctcaacaact
     2041 ctcgctcgac gcgatgatcg agcgcgacct cgcttcgctg ttgtccacct acaaagcgct
     2101 ccacgccgcg cccgagcttt cgcaccgcga ggaaaagacg tctgctttcg tcgccggcga
     2161 actgcgtaaa ctcggattca cggtcaccga gcgcatcggc aagtttcaga acgcgcagtg
     2221 gacgggctac ggcgttgtcg gcgttttaaa gaacggaaca ggcccgacag tgctggtgcg
     2281 cacggagctc gacgcgctgc cggttgaaga aaaaacgggc gtgccgtatg cgagccaggt
     2341 caaaacgaag aacgacgccg gcgttgaagt gagcgtgatg cacgcgtgcg gtcacgacat
     2401 tcacatgacc agctttctcg gcaccgccaa gatgttgtcg gagttgaaga gtcgttggag
     2461 cggaacgctc gtgatgctgg gccaacccgc cgaagaaacc ggcgacggcg cgaatgcgat
     2521 gctgcgcgat aacctataca ccaatttccc aaagcctgat tacg
//
LOCUS       DASWTX010000065         3113 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_109372, whole genome shotgun sequence.
ACCESSION   DASWTX010000065 DASWTX010000000
VERSION     DASWTX010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3113
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109372"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..882
                     /gene="fusA"
                     /locus_tag="VGD38_01045"
     CDS             <1..882
                     /gene="fusA"
                     /locus_tag="VGD38_01045"
                     /inference="COORDINATES: protein motif:HMM:NF015706.4"
                     /note="EF-G; promotes GTP-dependent translocation of the
                     ribosome during translation; many organisms have multiple
                     copies of this gene; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEY0726625.1"
                     /translation="AIEPKSRQDEEKISTALHRILEEDPALHFSRDPQTKEFLLSGSG
                     QLHVETVVEKLKKRYGVEVTLHPPKVPYKETITQRAEVQGRHKKQTGGRGQFGDCKCV
                     FEPMPRGGGFVFEDKIFGGSVPQQFRPAIEKGIIEAAASGAIAGYPLVDFKVQLVDGS
                     FHPVDSDEHSFRAAGRKAFRAAMEKVKPSLLEPIMDVEISAPQEYAGDLMGDLNSRRG
                     RVQGMESSGKQQVIKAQVPLAEMLNYQSILNSITAARGVFHMQFSHYDPVPGQLATKI
                     VEQSRAEGRIRGGEEED"
     gene            complement(965..2008)
                     /locus_tag="VGD38_01050"
     CDS             complement(965..2008)
                     /locus_tag="VGD38_01050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726626.1"
                     /translation="MRRVLGLLVAASLYASAVASVAFAQQPQAAHQRAIEIVQQRIMQ
                     GPDGPPIPPPPPGADFVWIASENFGGKVVKGAPYSAEAVTESVQTLADGNRIVNKFTS
                     QVYRDSEGRTRREQTLKGLGGVGTGEEPMQTIFINDPVTGTTYSLDSRTHVAHKSMPF
                     KFQVMTKSGTAEGNTFEFKSGQGAGASTNVIVTTQGGPAPGTRVPAPGVVEHFDVRTE
                     GAAGFAIRTRPSPGNEVKEQLGKQMIEGVEAEGTRTTVTIPAGEIGNERPIEIVSERW
                     YSPELQLVVMTRHSDPRSGETTYKLTNINRTEPAKTLFEVPSGFTIREMKFGEPSIAP
                     LPRKKLANPANPE"
     gene            complement(2022..2789)
                     /locus_tag="VGD38_01055"
     CDS             complement(2022..2789)
                     /locus_tag="VGD38_01055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726627.1"
                     /translation="MNCQRFEQVVSELARGQMMEAEVRSEAVGHSERCEQCAARLRDE
                     ETLTRGLQLLAGDMESLRAPAELELKLREAFRERRVVAPVAVGSSRSRYWLVAVAAVL
                     LLAISVGAMWWGSETPQESVAEKTPAPKPAEVVSGPSEPEPKPEPKEVQYQAKDQTPK
                     RQLSKPVRRNTGNRRAPEPQVAHHPTNEIATDFVPLGDMNSVVLQDGGQIVRVKLSRS
                     ALVKFGFPVNMDRYNENVKADVLIGVDGLARAIRFVQ"
     gene            complement(2786..>3113)
                     /locus_tag="VGD38_01060"
     CDS             complement(2786..>3113)
                     /locus_tag="VGD38_01060"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0726628.1"
                     /translation="IGDDGEDEANFAVVESDLCPLEDLARAETVELVRKAVLSLPPKY
                     REVVVLCELQDVSYGETAEILGCAIGTVRSRLHRARALLLTKLRPAGSVEDANSASVK
                     SARCFA"
BASE COUNT          620 a          967 c          881 g          645 t
ORIGIN      
        1 gcgatcgaac cgaagtcacg acaggacgaa gagaagatca gcacggcgtt gcatcgcatc
       61 ctcgaagaag atccggcgct gcacttcagc cgcgacccgc agacgaaaga gtttctgctt
      121 tcaggctcgg gacaactgca cgtcgagaca gttgtggaga agttgaagaa gcgttacggc
      181 gtggaagtca cactccatcc gccaaaagtt ccgtacaagg agacgatcac gcagcgcgcg
      241 gaagtgcagg gccggcataa gaaacagacc ggcggccgcg ggcagtttgg cgactgcaag
      301 tgtgtgtttg agccgatgcc gcgtggtggt ggttttgttt ttgaagacaa gatcttcggc
      361 ggctcggttc cgcagcagtt ccggccagcg attgaaaaag gaattatcga agcagcggcg
      421 tcaggcgcga tcgccggcta tccgctcgtg gatttcaaag tgcagttggt cgacggttcg
      481 ttccatccgg ttgactcgga cgaacattca ttccgcgccg ccggccgcaa ggcgtttcgc
      541 gcggcgatgg agaaggtgaa gccgtcgctg ctcgagccga tcatggacgt cgagatctcg
      601 gcgccgcagg agtacgcggg cgatctcatg ggcgatctca actctcgtcg cgggcgtgtt
      661 cagggaatgg agtcaagtgg caagcagcag gtgatcaaag cgcaagtgcc gctcgcggag
      721 atgctgaact accaatcgat tctcaactcc atcaccgccg cgcgcggcgt cttccacatg
      781 cagttctcac actacgatcc ggtccccggc caactggcca caaagatcgt ggagcaatca
      841 cgcgccgaag gccgcatccg cggaggcgag gaagaagact agttcgaaca atcatcgcaa
      901 aatagaaagg ccactcggac aaaccgagtg gccttttggt tggcgcaacc gtttgagaga
      961 gcggttactc cggattcgcc ggattggcga gtttcttgcg cggcaggggc gcgatgctcg
     1021 gctcgccgaa tttcatttcc ctgatggtga aaccagacgg gacttcgaag agcgtcttcg
     1081 ctggttccgt gcggttgatg ttcgtcagtt tgtaagtggt ctcgccagaa cgcggatcgc
     1141 tgtgacgcgt catcacgacg agctgcagtt ccggtgagta ccagcgctcg ctgacgatct
     1201 cgatcggacg ttcgttacca atctcgcccg ccgggatcgt cacggtcgtg cgcgtgccct
     1261 ccgcttcaac gccttcgatc atctgcttgc caagctgttc tttgacttcg ttgcccggcg
     1321 acggcctggt cctgattgca aagcccgctg cgccttcagt gcgcacgtcg aaatgttcga
     1381 caacgcccgg agcaggaacg cgcgttcccg gtgccggtcc accttgcgtc gtgacgatca
     1441 cgttggtcga cgcgccggcg ccttgtcctg acttgaactc aaaagtgttt ccttctgcag
     1501 tgccggactt cgtcatgacc tgaaacttga acggcatgct cttatgcgca acgtgcgtgc
     1561 gcgagtctaa cgagtaagtg gtgccggtga cgggatcgtt gatgaatatt gtctgcatcg
     1621 gctcttcacc ggtgccgacg ccgccaaggc ccttcaacgt ttgttcgcgc cgcgtgcggc
     1681 cttcgctgtc gcgataaacc tgactcgtga acttgttgac gatgcgattg ccgtcggcga
     1741 gcgtctgcac gctctcagtc acggcttcag ccgaataagg cgcgcctttg acgactttgc
     1801 cgccaaagtt ttcgctggcg atccacacga agtcagcgcc cggcggaggc ggcggaatcg
     1861 gcgggccgtc cggtccctgc atgatgcgct gttgcacgat ctcgatcgcc ctttggtgcg
     1921 cagcctgcgg ctgttgtgca aaagcaactg acgcgacggc tgacgcgtaa agacttgccg
     1981 caaccaatag tcctagtact cgtctcatct ctaatatcct ttcattgaac gaaacgtatg
     2041 gcacgggcca aaccgtcgac cccaatcaag acatctgctt tgacgttttc gttgtaacga
     2101 tccatgttca ctggaaaacc aaacttcacg agcgccgagc gcgataactt cacgcgaacg
     2161 atctgtccgc cgtcctgaag gaccactgag ttcatgtcgc cgagcggcac gaagtctgtc
     2221 gcgatttcgt ttgtcgggtg atgtgcgacc tgaggttccg gagcgcggcg attgccggtg
     2281 ttgcgccgga cgggtttcga aagttgtcgc ttcggcgtct ggtccttcgc ttggtactgc
     2341 acttctttcg gctctggttt aggttccggt tcacttggac cactgaccac ttccgccggc
     2401 ttcggcgccg gagttttttc cgcaacgctt tcctgcggcg tttctgaacc ccaccacatc
     2461 gcaccgacgc tgatcgccaa caacaaaact gctgctacag caaccaacca gtaacgcgac
     2521 cgcgacgacc caaccgcaac cggagcaacc acacgccgct cgcgaaacgc ttcgcgcaac
     2581 ttcaactcca actcagccgg cgctctgagc gactccatat cgccggccaa caactgcaac
     2641 ccgcgagtga gcgtttcctc gtcgcgcaaa cgcgccgcac attgttcaca ccgctcgctg
     2701 tggcccacag cttccgaccg cacttcggct tccatcatct gaccgcgagc cagctcacta
     2761 acaacctgtt caaatctttg acagttcatg cgaaacacct cgctgacttc acactcgccg
     2821 agttcgcgtc ttcaacgctt cccgccggcc gcagctttgt cagcagcaac gcgcgcgccc
     2881 ggtgcagacg cgagcgtacc gtcccaatcg cgcaaccaag aatctcggcc gtctcaccgt
     2941 aactcacgtc ctgcaactcg cacaggacca ccacttcacg atacttcggc ggcaaactga
     3001 gcaccgcctt gcgaaccaac tcgaccgtct cggcccgcgc gagatcttcg agcgggcaca
     3061 gatcggattc gacgacggcg aagttcgcct cgtcttcgcc gtcgtcgccg atc
//
LOCUS       DASWTX010000066         1946 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_326199, whole genome shotgun sequence.
ACCESSION   DASWTX010000066 DASWTX010000000
VERSION     DASWTX010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326199"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1433
                     /locus_tag="VGD38_01065"
     CDS             <1..1433
                     /locus_tag="VGD38_01065"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEY0726629.1"
                     /translation="LLLLLFAAPVVSTASAQQQPADTIKRQLYESFNKGDVQAFAALV
                     DSTDQQQRDEFLLYVLSQAKQSPIEFVRVLLDNGAAVNQATRYKTPLMHAASEGYADV
                     VTLLLARGAEVNAITDEGNAVMEAVKGGHVETLKILLEAKADAQAVHRTGEQALMMAA
                     RQRSYRTPSTEPNPEIVRLLLAHGADPYAKSRWGETALMFANTAAKVKLLAAKGADLE
                     AKDQEGQTALMKAAKRGDVGVAGALIDSGASVNSVDNKGSNALFYALDRENTAYGDER
                     ATLPARRLEIARRLLSTKSLDVNAQNTDGETALIRAVRLQDVEMIKSLLARGADANRS
                     DVFGDTAATLAYASGKTEMEQLLPAPAFKGQPLNVLNAFLRAAIGRKDEPIVKALLAA
                     GADPNHEYAIGYTHKSIKSRVLVLAAGLGHTGIVQLLLKNGADVNAKGLISGSEHGLE
                     FGTALEAAEQANKPEVAALLRNARQD"
     gene            1449..>1946
                     /locus_tag="VGD38_01070"
     CDS             1449..>1946
                     /locus_tag="VGD38_01070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726630.1"
                     /translation="MKKRRVAVNDLMQSNYVYFCTEPIGRNFHADFNPELTPKEMLEL
                     GVFGGKYLTDCRREFPDSWFRRAKLSPERRDPKLNYFGVNASVPLAVWRRKGWIYHED
                     PRGWFQWYCRYYMGRRCPDDERQIKRWRAIRRHIAQIKKNCPPHEMECRPKQRQALLH
                     WAYDSR"
BASE COUNT          454 a          575 c          555 g          362 t
ORIGIN      
        1 tgcttcttct cttgttgttt gccgcgccgg ttgtttccac cgccagtgcc cagcaacaac
       61 ctgctgacac tatcaaacga cagctttacg agagcttcaa caaaggcgac gtgcaggcgt
      121 ttgcggcgct tgtggattcc accgatcaac agcaacgcga cgagtttttg ctgtacgtgc
      181 tgagccaggc gaagcagtcg ccgatagagt ttgttcgtgt gcttctcgat aacggcgccg
      241 cggtaaacca agcgacgcgt tacaagactc cgttgatgca cgccgcgagt gaaggttacg
      301 cggatgtggt tacgttgttg cttgccagag gcgctgaagt gaacgcgatt accgacgaag
      361 gcaacgctgt gatggaggct gtgaagggcg gtcacgtcga aacgctgaaa atcctgcttg
      421 aagcgaaagc ggatgcgcaa gcggttcaca gaaccggcga acaggcgctg atgatggccg
      481 cgcgacaacg cagctatcgc acgccgtcaa cagaacccaa tcccgaaatc gtgcggctcc
      541 tgttggccca tggcgccgat ccctacgcca aaagccgttg gggcgaaacc gccttgatgt
      601 ttgcgaacac cgcggcgaaa gtaaaactgc tggctgctaa aggcgcggat ctcgaagcga
      661 aagatcagga aggccaaacc gctttgatga aagcggcaaa gcgaggtgat gttggcgtcg
      721 ctggtgctct cattgatagc ggcgcaagcg tcaactctgt cgacaacaaa ggctcgaacg
      781 cattgttcta cgcgctcgat cgtgaaaaca ccgcgtacgg tgacgaacga gccacacttc
      841 ctgcgcgccg gctcgaaatt gcgcgacgac tactgtcgac caagtctctc gacgtgaacg
      901 cacagaacac cgacggcgaa accgctttga ttcgcgcggt gcggcttcaa gacgtcgaaa
      961 tgatcaaatc gctgctagcc cgtggcgctg atgcgaatcg cagcgacgtg ttcggcgaca
     1021 cggccgcgac tctcgcttat gcgagcggca aaaccgaaat ggaacagttg cttccggcgc
     1081 cagcattcaa aggccaacca ctcaacgtac tcaacgcatt cctgcgcgcc gccatcggcc
     1141 gaaaagatga accaatcgtc aaagcgctgc tcgccgccgg cgccgatcca aaccacgaat
     1201 acgcgatcgg ctacacacac aagtcaatca aaagccgcgt cctcgtactc gccgcgggtc
     1261 tcggccacac cggcatcgtt cagcttctgc taaagaacgg cgccgacgta aacgccaaag
     1321 gtctcatctc cggcagcgaa cacggtctcg aattcggcac cgcgctcgaa gccgccgaac
     1381 aagccaacaa acccgaagtc gccgctctgt tgcgcaacgc cagacaggat tgataccgtt
     1441 ctgctctgat gaaaaagcgg cgtgtggcag tcaacgatct gatgcagtca aactatgtct
     1501 acttctgcac cgaaccgatt ggcaggaact ttcatgcgga cttcaacccc gagctcacgc
     1561 cgaaagagat gctcgagctc ggcgtgtttg gcgggaagta cttgactgac tgccggcgcg
     1621 agtttcccga ttcgtggttt cggcgggcca aactctctcc cgagcgtcgc gatccgaagc
     1681 tcaactattt cggcgtgaat gcgtcagtgc cgctcgcggt gtggcgcagg aagggctgga
     1741 tctatcacga agatccgcgc ggctggtttc agtggtattg ccgctattac atgggccgtc
     1801 gctgtcccga cgacgagcgg cagatcaaac gctggcgcgc gattcggcgt cacatcgcac
     1861 agattaagaa gaactgcccg ccgcatgaaa tggaatgccg gccgaaacag cgacaagcgc
     1921 tactgcactg ggcctacgat tcgcga
//
LOCUS       DASWTX010000067         2207 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_304301, whole genome shotgun sequence.
ACCESSION   DASWTX010000067 DASWTX010000000
VERSION     DASWTX010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304301"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..874)
                     /locus_tag="VGD38_01075"
     CDS             complement(<1..874)
                     /locus_tag="VGD38_01075"
                     /inference="COORDINATES: protein motif:HMM:NF012239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEY0726631.1"
                     /translation="MKVYSTEAIRNLAVIGHGDAGKTQLISSLLYVAGATPRWGKVDE
                     GTTVTDYEEDSIARKITLNTALAHLDHRDTKLNFIDTPGYAAFIAHARPALRVADCAI
                     VVVDGVKGVEVQTEKTWAYANEFMVPRIMVINKLDKEHADFGAALQSAQGTFSRAIIP
                     FTLPIGKEKDFRGVVDVVHMKAYELGPDGQAKEVDIPSEGRDIVEKTRERLVELVAES
                     NDQLMEKYFENGTLDEEDILPNINNAIAQSKLCPVFAVSSITQVGLRALLNGLVDYAP
                     DPAHHEVEWGRPVDG"
     gene            997..1743
                     /locus_tag="VGD38_01080"
     CDS             997..1743
                     /locus_tag="VGD38_01080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726632.1"
                     /translation="MLKVMYYRKLVSLAVAVVLALSAVWVASATPKINDENEQRRLQT
                     IEPLNLAILIQDDLVPQVGNELGVTRDFIRSLPQGSQVMVAYITTGTLQVRQPFTTDL
                     EKAARSLRIPTASTASSPFNPYVEVIEALRKFDSNNRNANALLLISDGLDTSRGFDST
                     AAGHTLDIERAIREANKRHVSVFSFYAPSVGLTSHSRLAASYGQSSLNRISNETGGRA
                     FFQGSSGFVTFNSYFDRLRETLNRQYAIGR"
     gene            1851..2171
                     /locus_tag="VGD38_01085"
     CDS             1851..2171
                     /locus_tag="VGD38_01085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726633.1"
                     /translation="MREYCLIVEGAYLSESEAEHALRDPFLEDWVEQTGRFRIHNMDE
                     ILVTPGVTLGSLGIVMLDDRVFEIASTDPDHPLNEHTAKGVAEALRRQDMFDEIRTEP
                     RGEE"
BASE COUNT          465 a          579 c          638 g          525 t
ORIGIN      
        1 caccgtccac gggacggccc cactcgactt cgtgatgcgc gggatcgggt gcgtagtcga
       61 ctagaccatt caacagcgcg cgcaagccga cctgcgtgat gctcgacacg gcaaagaccg
      121 gacacagttt gctctgggcg atcgcgttgt tgatgttggg caggatgtct tcttcgtcga
      181 gcgtgccgtt ttcgaagtat ttctccatca actgatcgtt tgattcggcg acgagttcga
      241 ccagacgttc gcgcgtcttc tcgacgatgt cgcggccttc ggacggaatg tcgacctctt
      301 tcgcctggcc gtctggtcca agctcgtaag ccttcatgtg gaccacgtcg acgacgccgc
      361 gaaagtcttt ctcttttccg atcggcaaag tgaaaggaat gattgctctg ctgaaagttc
      421 cctgtgcgct ctgcaaagcc gcgccgaagt cggcgtgttc cttgtcgagc ttattgatca
      481 ccatgatgcg ggggaccatg aactcgttgg cgtaggccca ggtcttctct gtttgaactt
      541 caacaccttt gacgccgtcg acaacgacga tggcgcaatc cgcgacgcgc agcgccggcc
      601 gcgcgtgggc tataaatgcg gcataaccgg gcgtgtctat aaaattgagt ttcgtatcgc
      661 gatgatcgag atgtgctaat gcggtattaa gtgtgatttt acgagcgatg gaatcttctt
      721 cgtaatcggt gactgtggtt ccttcatcta cctttcccca gcgcggtgtg gctccggcga
      781 cgtagagaag agagctgatt agctgcgtct tccctgcgtc gccatgtcca atgacagcaa
      841 ggtttctgat ggcctcagtc gagtagactt tcataaatgt gattcctttc gggcgtggag
      901 attttgtcga aggataccta tccgcatagg ttaaaggcaa gttagcacca gccatccaaa
      961 acagggttta aggcatctca gcacccggaa atggagatgt tgaaagtcat gtattatcgg
     1021 aagttagtgt cgttggcggt ggccgtcgtg ttagcgcttt ccgcggtttg ggttgcctct
     1081 gcgacaccga aaattaatga tgaaaacgaa cagcgcaggc tccagacaat cgagccttta
     1141 aatctggcga ttctgattca ggacgatctc gtgccgcagg tgggcaacga actcggcgtt
     1201 acgcgtgatt tcatccgctc tttgccgcag ggttcgcagg tgatggttgc ttacatcact
     1261 accggtactc tgcaagtgcg gcaaccgttt acgactgacc tcgaaaaggc agcgcggtca
     1321 ttgcgcattc cgaccgcgag tacagcgagt tcgccgttca atccgtacgt cgaagtcata
     1381 gaagcactac ggaagttcga cagtaacaac aggaacgcaa acgcgcttct gttgatttcc
     1441 gatggactcg acacgtcgcg tggttttgat tcaaccgcgg cgggccacac gctcgacatc
     1501 gagcgggcga tcagggaagc gaacaagcgg cacgtgtcgg tgttcagttt ctacgctccg
     1561 tcggtcgggt tgacgagcca cagccgcctt gcagcgagtt acgggcagag ttcgttgaac
     1621 cgaatctcga atgaaactgg tggacgagcg ttcttccagg gcagcagtgg ttttgtaacg
     1681 ttcaactctt acttcgaccg tttgcgtgag acgctgaatc ggcaatacgc gatcgggcgg
     1741 taggtaagag aggcgagcat cgctggtggt tggaataggt cctataagtt ctataggacc
     1801 tattttcttt tgcgactgac ggtgataaat tagcgcgccg agaacccacc gtgcgcgaat
     1861 attgtctgat tgtcgaaggc gcctaccttt ccgaatctga ggccgagcac gcgttgcgcg
     1921 acccctttct tgaagattgg gtcgagcaaa ccggtcgctt ccgcattcac aacatggacg
     1981 agattctcgt cacgccgggc gtcacgctcg gttcgctcgg catcgtgatg ttggacgacc
     2041 gcgtgtttga gattgcgagt actgaccccg atcatcccct caacgaacat accgccaagg
     2101 gcgttgccga agcgctgcgc cgccaggaca tgtttgacga aatcagaact gaaccgcgcg
     2161 gtgaagaata agccggatgg cgcagtcgtt ttcggcagac gcgcggg
//
LOCUS       DASWTX010000068         8798 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_412403, whole genome shotgun sequence.
ACCESSION   DASWTX010000068 DASWTX010000000
VERSION     DASWTX010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8798
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_412403"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1242)
                     /gene="hutH"
                     /locus_tag="VGD38_01090"
     CDS             complement(<1..1242)
                     /gene="hutH"
                     /locus_tag="VGD38_01090"
                     /EC_number="4.3.1.3"
                     /inference="COORDINATES: protein motif:HMM:NF006871.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004397 - histidine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ammonia-lyase"
                     /protein_id="HEY0726634.1"
                     /translation="MLQLKGQQLTLQQIADVATGKTRVTLAAEARQRVEEARRVVEQI
                     VAENRTVYGVNTGFGKLSDVSIEQSDLRQLQVNLVRSHSCGLGQPLSEPEARAMLLLR
                     ANVLATGFSGARPLVIETLLAMLERGVTPVIPEKGSVGASGDLAPLAHLALAAIGEGD
                     AFYNGERLPGAVALQRAQIAPLQLEVKEGIALLNGTQAMGAVGSLALHRADRLVRLAD
                     VAGAMTLEALRGTPVAFDERIHTARPHAAQIAVAAHLRELLQDSEIRASHVDNDPRVQ
                     DAYSLRCMPQVHGAVRTALAHATDVVQIESGSATDNPLVFSETGEVLSGGNFHGAPLA
                     LVFDYAAIALTDLMSITERRIDRLVNPDANEGLPPFLTAHPGISSGFMMLQVSAVALL
                     NEAKVLAHPASIDNVPTDGGKE"
     gene            complement(1310..2254)
                     /locus_tag="VGD38_01095"
     CDS             complement(1310..2254)
                     /locus_tag="VGD38_01095"
                     /inference="COORDINATES: protein motif:HMM:NF021539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2270 domain-containing protein"
                     /protein_id="HEY0726635.1"
                     /translation="MSTEVSQRGSGPSSTERTTGRLRPSPAPEPVPDSSVQSPAALMR
                     RMTPSEFNTAMIHFYRGEVQRSNTWRNRLDTTTNWAVITAGATLSFVFSSPTNPHFVI
                     PINSILVAIFLLMEARRYRYYEIWSSRVRILETGYFAHLLAPENQPAEESWAEHLAAD
                     LTTPHFTITEWEAIGRRLRRNYLWIFALLALSWNLKVYMSPLPARDFDVFIERATVGV
                     VAGWIVFVVGVVFNAAIFIFAVGTLRLREATGEVLPKHEFSLRPFKRMTSWTAATTRR
                     TTVRAKRARQRVRSSATTGEFKKIDITETPDKPVEVGR"
     gene            2416..2880
                     /gene="tadA"
                     /locus_tag="VGD38_01100"
     CDS             2416..2880
                     /gene="tadA"
                     /locus_tag="VGD38_01100"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: protein motif:HMM:NF008113.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008251 - tRNA-specific adenosine
                     deaminase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0002100 - tRNA wobble adenosine to inosine
                     editing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HEY0726636.1"
                     /translation="MTAAEPEDEHWMRQALAAAQEARNCGEVPVGTCIVHGNQLIAVS
                     GNRTRTDCDPTAHAEIVALREAARKLGNYRLTGVDVYSTIEPCAMCAGALIQARIRRL
                     IYGAPDERAGAVHSRFRICDTDFLNHRIEVRAGVLEDECRALMQDFFRRRRA"
     gene            2891..2980
                     /locus_tag="VGD38_01105"
     tRNA            2891..2980
                     /locus_tag="VGD38_01105"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2925..2927,aa:Ser,seq:cga)
     gene            3042..3131
                     /locus_tag="VGD38_01110"
     tRNA            3042..3131
                     /locus_tag="VGD38_01110"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3076..3078,aa:Ser,seq:gga)
     gene            3196..3714
                     /locus_tag="VGD38_01115"
     CDS             3196..3714
                     /locus_tag="VGD38_01115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726637.1"
                     /translation="MDDKLAAEEARRAAQHESVKAQVEGEVQAEISDRAATKATRNES
                     ERIDEVAGDFRSRAVDEVIDTEREVQRSRGLARVSQIVDYIFYVIYALLAMRFLLALL
                     AARSSAGFVRFIVAVSNPFYEPFRGIVAAPRTDGGHTLMLPILIALVAYVLAHLLINA
                     LLRMLAHRKTEI"
     gene            3749..3847
                     /gene="ffs"
                     /locus_tag="VGD38_01120"
     ncRNA           3749..3847
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="VGD38_01120"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            3869..4618
                     /locus_tag="VGD38_01125"
     CDS             3869..4618
                     /locus_tag="VGD38_01125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726638.1"
                     /translation="MKKVSVLTGILVTLLLSSLTTLAQIKSREDVLKEINAKRAELAD
                     LEKAYLSPAEEDQVQFSEFLQTPNTGLVRLLPRQKFDSDVYKENQRSMTLRGGGAFYS
                     FSRLTHEYGGGSDLALDQNQFWVGFAGSDYGFFTALGDVPLESVSAETPAAALFGAYK
                     AAKDEAAARTEYRRLVSPVDLGGIPIRNRVPVRVNSTYLLRSIGYLRSDVLVAFRVVR
                     MDADGSVTILWKLLKKYETPGSKRPETAVAQ"
     gene            4679..6385
                     /locus_tag="VGD38_01130"
     CDS             4679..6385
                     /locus_tag="VGD38_01130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726639.1"
                     /translation="MKRFYVAATLLLLLGSLAVLAQTKPEGQKKETDAELADRLKKPL
                     GPSKEERLKYQAFLKAKNTGLVRLLPREKYDTPALQRINRNPVSPASLPRTSLDDIRD
                     RTALKDAADVPRVNTMDPSAKSPVVGKKSGDVRGGGAFYSFTQGTHEYGYATDVTLDQ
                     GKFGVGFYGASYGFLTDLGNVELETIDLDTPAVKPLAAYKPVYLEADARRESRRFGQG
                     DQIDGVTVKSRVPMQLNSTYVLRAVNYDEADVLVAFKVVDIDSDGSALLLWKRLKRYS
                     TPQLSPLGSLTVVARAQSSKDQKKAAEAKRAEFKKKSKTLLASKADRAKYADFLKAPN
                     TGLIRLLPRERFIHEAYVDPKKKAVPASLSSFPRYDSHDLTSSVPGAMTPERGPSGSN
                     SVSGPSLTNVRDLPSVDPAQPDNRGRARDGGAYYSFVRLTHEYGYGSDLSLEYGQFGV
                     GFAGADYGFITNLGDVPLESITLDTPEAKRLGAYARAKQESDARAEKRRFDKGAEIDG
                     VKVKSRVPMRANSTYLLRSINYDESDVLVAFKVVEIDSEGTPLILWKRLKRYTTPPLA
                     GN"
     gene            6416..8095
                     /gene="dnaX"
                     /locus_tag="VGD38_01135"
     CDS             6416..8095
                     /gene="dnaX"
                     /locus_tag="VGD38_01135"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004046.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEY0726640.1"
                     /translation="MAYQVIARKWRPQTFDEVTGQEPITRTLRNAIEHQRLHHAYLFS
                     GARGVGKTTSARLLAKALNCHKATQPTPAPCRSDDPDQCPSCREITESRSIDVQEIDA
                     ASNTGVDNVREAIIASVGIAPARDRYKIFIIDEVHMLSGAAFNALLKTLEEPPPRVVF
                     IMATTERHKVPETILSRCQQFEFRTIATAKILERLKLIAKSEQISVPDEALREIARSG
                     EGSMRDAQSALDQVISFAGSTIKKEDVEMALGIAGADILTRIIDSIAANRPADAIAVV
                     DDIVMRGHDLRNFCRDLLAHFRDLLVSKVSGNVELLESAVCEPEELQRQAAMFTEADL
                     VRFFHSLSETETKLRAATQPRYQLEVGIIKLMELRGVESIGEILRRLDSLESGSGGTA
                     PIPNKTAPPKSVSASSVSSFVATAAAPAPAPVAADASPFERVKSVIERQRKRFVVTAL
                     EAALTATLENNELFIEFAPEDRHLRETLLKPENAKLICEACREVTGQETGFRIAIKGP
                     QAEGEPRNPEDEARIEKQRLREMAESHPKVQTMLKTFRGEIVDVRPPANKD"
     gene            8160..8369
                     /locus_tag="VGD38_01140"
     CDS             8160..8369
                     /locus_tag="VGD38_01140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726641.1"
                     /translation="MRDPVLAGVLSLIVPGVGQLYNGRILAGILWLIFTPGFWLGTGG
                     TLGWICHIVSAYCAYSYAKEHPVRY"
     gene            complement(8363..>8798)
                     /locus_tag="VGD38_01145"
     CDS             complement(8363..>8798)
                     /locus_tag="VGD38_01145"
                     /inference="COORDINATES: protein motif:HMM:NF026220.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YCF48-related protein"
                     /protein_id="HEY0726642.1"
                     /translation="VRGYIVGARGLVLRTDDGGVSWKDLESGVNGNLFGVDVASRNDV
                     LVVGEQGNIIHSKDAGATWEIQPSITSTALFSIAYRGGNNVWIAGRGGAILRRVEPVA
                     TVTIPVSKLPPVLRGGSTKLEEPLDPNDIPRAMPPKKTDKPQ"
BASE COUNT         1955 a         2578 c         2514 g         1751 t
ORIGIN      
        1 ttctttgccg ccgtcagtcg gcacgttatc gatgctcgcg ggatgcgcca acactttcgc
       61 ttcgttcagc agcgcgacag ccgaaacctg caacatcatg aaacccgacg agatgcccgg
      121 atgcgctgtc agaaacggcg gcaagccttc attcgcgtca ggattcacga ggcgatcgat
      181 gcgccgctcg gtgatactca tcaaatctgt caaagcaatt gcagcatagt caaaaacgag
      241 cgcgagcggc gcgccgtgaa agtttccgcc tgataaaacc tcgcctgttt cagaaaacac
      301 taacggattg tcagtcgcac tgccgctttc gatctgcacc acgtcggtcg catgggccaa
      361 cgcggtgcgc accgcgccgt gcacttgcgg catgcaacgc aaactgtaag cgtcctgcac
      421 gcgcggatcg ttatccacgt gcgacgcgcg aatctcgctg tcctgcaaca actcgcgcaa
      481 atgcgccgcg accgcgattt gtgcggcgtg tggacgcgcg gtgtgaatac gttcgtcaaa
      541 cgcgaccggt gttccacgca acgcttcgag cgtcatcgcg cccgcaacgt cagcgagacg
      601 gaccaacctg tcagcacgat gcaatgccaa cgaaccgacc gcgcccatcg cctgcgttcc
      661 gttcagcagc gcgatgcctt ctttgacttc gagttgcaac ggcgcgatct gcgcgcgctg
      721 cagagcgaca gcgccgggta gacgttcgcc gttgtagaac gcgtcgcctt cgccgatcgc
      781 ggcgagtgcg agatgggcca acggcgcgag gtcgccgctg gcgccgaccg atcctttttc
      841 gggaatgacg ggagtgacgc cgcgttcgag catcgcgagc aacgtttcga tcacgagcgg
      901 acgcgcgccg ctgaagccgg ttgccagcac gttcgcgcgc agcaacagca tcgcgcgtgc
      961 ttcgggttcg gaaagcggct gacccaggcc gcatgaatga ctccgcacca ggttcacttg
     1021 caactggcgc aagtcagact gttcgatgct gacgtcggaa agttttccga aaccggtgtt
     1081 gacgccgtag accgtgcggt tttccgcgac gatctgttcc acgacacgcc gcgcttcttc
     1141 gacgcgctgg cgcgcctcgg cggcgagtgt gacccgtgtt ttaccagtgg ctacatctgc
     1201 gatttgctga agagtaagtt gttgcccttt aagctgaagc atgtgtaaga cagatcgacc
     1261 tcagatcccc tcacaggaac ctactaaaga tgttcgaagt ggtcaaaagc tagcggccta
     1321 cttcgactgg cttgtccggg gtctcggtga tatcgatctt cttaaactcg cccgtcgtcg
     1381 cggaactgcg cacacgttgc cgcgcgcgct tcgcacgaac cgtcgtgcgc cgcgtcgtcg
     1441 cagccgtcca gctcgtcatc cgcttgaacg gccgcaaaga gaactcatgt ttcggcaaca
     1501 cttctcccgt cgcttcacgc aaacgcagtg tgccgaccgc aaaaataaag atcgccgcat
     1561 tgaacacaac gcccacgaca aatacgatcc agccggcaac aacgccgact gtcgcacgct
     1621 cgatgaacac atcgaagtcg cgggccggca gcggcgacat ataaactttc aggttccagc
     1681 tcagcgccag cagcgcgaag atccacaggt agttgcgacg caaacgcctg ccgatggctt
     1741 cccactcggt gatcgtgaaa tgcggcgtcg tcaggtcagc ggccagatgt tccgcccagc
     1801 tttcttcggc gggctggttt tccggcgcaa gtaaatgcgc gaagtagccc gtctcgagaa
     1861 tgcgcacgcg gctcgaccag atctcgtaat agcgataacg ccgcgcttcc atcaacagga
     1921 agatcgctac gagaatcgag ttgatgggaa taacgaagtg cggattggtt ggcgaactga
     1981 aaacaaacga aagcgtcgcg ccggccgtga tgactgccca gttcgtcgtc gtgtcgagac
     2041 gattgcgcca ggtgttcgag cgctgcacct caccgcggta aaaatgaatc atcgcggtgt
     2101 tgaactcgct cggcgtcatg cgccgcatca gcgcggccgg cgattgcacg gacgaatcgg
     2161 gaacaggctc aggagcgggc gacggcctca gcctgccggt agttctttct gtcgatgatg
     2221 gaccgcttcc tctttggctt acttcggtgg acattgggac ctgagtcgcg tggagcgcac
     2281 cgcccgatcg cggcgcagaa actccgggaa actgataata acatgcgggt cccggcttgt
     2341 gtcgaacgaa ttgccaacta atagtcgctt gtcctatagt ggccgttcgg ctgtttgaag
     2401 gaatcgaagt tagtgatgac tgccgcggaa cccgaggacg aacactggat gcggcaggcg
     2461 ctggccgcgg cccaggaggc tcgaaattgc ggtgaggtgc ccgtcgggac atgtattgtc
     2521 cacggcaacc aactcatcgc cgtctccggc aaccgcaccc gcaccgactg cgacccaact
     2581 gcccacgccg aaatcgtcgc tttgcgcgag gccgcccgta agctgggcaa ttaccggctc
     2641 acgggcgtcg atgtctattc gacgatcgag ccgtgtgcga tgtgcgcggg cgcgttgatt
     2701 caggcgcgca tcaggcgttt gatttacggc gcgccggacg aacgcgcggg cgcggtacac
     2761 agtcgatttc gcatctgcga tacagatttt ttgaatcatc gcatcgaagt gcgcgccggc
     2821 gtgctggagg atgagtgccg cgcgctgatg caggattttt ttcgccgcag gcgtgcctga
     2881 atagagacac ggagaggtcg catagtggat tagtgcaccg gtctcgaaaa ccggagtggg
     2941 ttaacgccca ccgtgggttc gaatcccacc ctctccgcca tatttgagag ttctcaaagc
     3001 cggatttgag aacttgaatc actcatctgc ggtataaagc cggagaggtg caggagtggt
     3061 tgaactggca gcactggaaa tgctgtgaac gggaaaccgt tccgtgggtt cgaatcccac
     3121 cctctccgcc agaattgata tttttcgtcc ccccgacgcc ccctgaccaa gaccattcca
     3181 gttcagggag aatagatgga cgacaaactg gcggctgaag aagcgcggcg cgcggcgcaa
     3241 cacgaatcag tcaaagcgca ggtcgaaggc gaggtacagg ccgagatcag cgatcgcgcg
     3301 gctacaaagg cgacccgcaa cgagtcggaa agaatcgacg aagttgcagg tgattttcgt
     3361 tcgcgggcgg tagacgaggt cattgacaca gagcgggaag tgcaacgttc gcgtggtttg
     3421 gcgcgcgttt cacagatcgt ggattacatc ttctatgtaa tctacgcact tttggcgatg
     3481 cgcttcctgt tggcgttgct cgcagcacgc agtagcgcag gattcgtacg gttcatcgtg
     3541 gcggtcagca atccgtttta cgaaccgttt cgtggtatcg tggcggcccc gcgaaccgat
     3601 ggtggccaca cgttaatgct gccgatcctg attgcgctgg tggcgtatgt gttggcgcat
     3661 ttgctgatca acgcactgtt gcgcatgctg gcgcatcgta agaccgagat ttagtctcgc
     3721 ccgtccgaat tgacaaccaa atatcagatc ccgggctccg cacaacgcta gccttgtgaa
     3781 ccccgccagg ccgggaacgg agcaacggta gcaacggcgg cgtgtgttgc gggaaagtcc
     3841 ggggtctggc cagaggaggt attacccgat gaagaaagtc tccgtgctca cagggattct
     3901 tgtcacttta cttctatcct ccttaacgac tctcgcacaa attaagtcac gtgaagacgt
     3961 gctgaaggaa attaacgcca agcgcgccga gttggccgac ctcgaaaaag cttatctctc
     4021 gcctgctgaa gaagaccagg ttcagttttc agagttcctg caaacaccga ataccggtct
     4081 ggttcgtctc ctgcctcgcc agaagttcga cagcgatgtc tacaaggaaa atcagagaag
     4141 catgacactg cgcggtggtg gcgcttttta ttcgtttagc cgcctcacgc acgaatacgg
     4201 tggtggtagc gacctcgcgc tggatcaaaa tcagttttgg gtcggttttg ccggatcaga
     4261 ctatggcttc tttacggccc tcggcgatgt tccactcgaa agtgtcagtg cagaaacccc
     4321 ggcagccgcg ctttttggtg cttacaaagc cgcgaaggac gaagcggctg cgagaaccga
     4381 atatcggcga ctcgtatcgc ccgtcgacct cggaggcata ccaatcagaa accgggtgcc
     4441 cgttcgggtg aattcaactt acttactgcg gtccatcggg tacttgcggt ctgatgtgct
     4501 cgtcgctttc agagtcgtgc gcatggacgc cgacggcagc gtgacgattc tttggaagct
     4561 gttgaaaaag tacgagactc caggcagcaa gcggccggaa actgcggttg cacagtaaga
     4621 ccttgaaaca ctcaattgat ggcctgtcag ctccccgaag gccgacggga ggtctaccat
     4681 gaaaagattc tacgttgccg caaccttact gctgctgctc ggttcgttag cagttctcgc
     4741 tcagaccaag cctgaaggtc agaaaaagga aaccgacgcc gaattagccg accggctgaa
     4801 gaaacccctc ggtccttcga aagaagaacg gttgaagtac caggcttttc taaaggcgaa
     4861 aaacaccgga ttggttcgcc tgttgccgcg cgagaaatac gataccccag cgcttcaacg
     4921 tatcaaccgc aaccccgtat ctccggcgtc acttccacgg acgtcgctcg acgacatccg
     4981 agatcgtacg gctttgaagg acgcggctga cgttccacgc gtcaacacta tggacccgtc
     5041 agcaaagtcg cccgtcgttg gaaagaaaag cggcgacgtt cgcggcggtg gtgctttcta
     5101 ctcgttcacg caaggaacgc acgagtatgg ctacgccaca gacgtaacac tcgaccaggg
     5161 taaattcggc gttggctttt acggtgcgag ctatggcttc ctgacagacc tcggcaatgt
     5221 tgaactggag acgatcgatc tcgacacgcc tgcggttaaa cccctggcgg cgtacaagcc
     5281 ggtttacctc gaagcagacg ccaggcgcga atcccgccgc tttggtcaag gcgatcagat
     5341 cgacggagtc actgtcaaaa gccgcgtgcc catgcagctg aattcgactt atgtgctcag
     5401 agcggtaaac tatgacgagg ctgacgtgct ggttgctttc aaagtggtgg acatagactc
     5461 cgatggcagt gcgttgcttc tttggaagcg gctgaagcga tactcaacgc cacaactctc
     5521 tccgctcggt tcgttgactg tcgtcgcacg cgcgcagtcg tctaaagacc agaagaaagc
     5581 ggctgaggcc aaacgagccg aattcaaaaa gaagtctaag actcttttgg cctcgaaagc
     5641 ggaccgggcg aagtacgcgg actttctgaa ggcgcccaac acgggcctga tccgcttgct
     5701 gccgcgagaa agattcatcc atgaggcgta cgtagacccg aagaagaaag cagttccagc
     5761 atctctcagc tcatttccgc ggtacgactc tcacgacctc actagctccg ttccgggtgc
     5821 gatgactcct gaacgagggc catcgggcag caactccgtc tcaggacctt cgctgaccaa
     5881 cgttcgggac ctaccaagtg tcgatccggc ccagcctgac aatcgcggac gcgcgcgcga
     5941 cggaggcgcg tactattcct tcgtccgatt gacgcacgaa tacggatacg gcagtgacct
     6001 ttcactcgag tatggtcagt ttggggttgg atttgccggc gccgactacg gtttcattac
     6061 caacctcggt gacgtgccgc tcgaaagcat tactctcgac acaccggaag caaaacgact
     6121 cggagcgtat gcccgagcca aacaggaatc ggacgcaaga gccgaaaagc gtcgctttga
     6181 taagggcgca gagatcgacg gcgtgaaagt aaaaagccgg gtgcccatgc gggcgaactc
     6241 gacttatttg ctccgctcta taaactatga cgaatccgac gtgctggtgg ccttcaaagt
     6301 agttgaaata gactcagagg gcactccgct catactctgg aagcggctga agcgatatac
     6361 aacgccaccg ctggctggaa actaaatttt cgaggggaaa acataaacgc tcaacatggc
     6421 ctatcaagta atcgcccgga agtggcgccc gcaaacgttt gacgaagtaa caggccaaga
     6481 gccgatcacg cgcacccttc ggaatgctat cgagcatcag cgccttcacc acgcgtacct
     6541 tttttcgggc gcgcgtggtg tcggcaaaac aaccagcgcc cgtctgctcg ccaaggcgct
     6601 gaactgccac aaagccacgc aacccacgcc ggcgccgtgc cgttccgacg atcccgatca
     6661 gtgtccttcg tgccgcgaga tcacggaaag ccgttcgatc gacgtgcagg agatcgacgc
     6721 tgcgtcaaat accggcgtgg acaacgtgcg cgaagccatc atcgcgagtg tcggcatcgc
     6781 gcccgcgcgt gatcgttaca agatcttcat catcgacgaa gttcacatgc tctcgggcgc
     6841 ggctttcaac gcgttgttga agacgcttga agagccgccg ccgcgcgtcg tcttcatcat
     6901 ggcgacgacc gagcgtcaca aggttccgga aacgatcctg tcgcggtgcc agcagtttga
     6961 gtttcgcacg atcgcgacgg cgaagattct cgagcggttg aaactgattg cgaagtcgga
     7021 acagatttcg gttcccgacg aagcgttgcg tgagatcgcg cgcagtggtg agggatcgat
     7081 gcgtgatgcg cagtcggcgc tcgaccaggt gatcagtttt gcgggcagca cgatcaagaa
     7141 agaagacgtg gagatggcgc tagggattgc aggcgccgac attctcacgc gcatcatcga
     7201 cagcattgcg gcaaacagac ccgcggacgc gattgcggtc gttgacgaca tcgtgatgcg
     7261 cgggcacgac ttgagaaact tctgccgcga tctgctcgcg cactttcgcg atctgctcgt
     7321 gagcaaggtt tcgggaaatg tcgaactgct cgaatccgcg gtttgcgaac ccgaagaatt
     7381 acaacgccag gcggcgatgt ttactgaagc cgatctcgta cgcttctttc attcgctttc
     7441 ggagacggaa acaaaactgc gcgccgcaac gcagccgcgg tatcagttgg aagtcgggat
     7501 aattaagctg atggaattgc gcggtgtcga aagtattggc gagatcttac gtcgtcttga
     7561 ctctctcgaa agtggctctg gcggtaccgc accaatcccc aacaagactg cgcctccgaa
     7621 atctgtatct gcgtcatctg tgtcgtcgtt tgtggccaca gcggccgcac cggccccagc
     7681 gccggtcgcc gccgacgcgt ctccgttcga acgcgtcaag tcagtcatcg aacgtcaacg
     7741 caaacgcttc gtcgtaaccg cactcgaagc agccctaacc gcaacgctcg aaaacaacga
     7801 actcttcatc gagtttgcgc ccgaggatcg ccacctgcgc gaaacgctcc tgaaacccga
     7861 aaacgcaaag ctgatctgcg aagcttgccg cgaagtaacc ggacaggaaa ccggtttccg
     7921 tatcgctatc aaaggtccgc aagccgaagg cgaaccacgg aatcccgaag acgaagcccg
     7981 catcgaaaaa cagcgcctgc gcgagatggc cgaaagccac ccaaaggtgc aaacgatgct
     8041 gaaaactttt cgcggcgaga tcgtcgacgt tcgcccgccc gcgaacaaag actagcgaac
     8101 tgagacgaac aaaatccgga tagccttcgt atgggattcg gttacggagg tagctgaaga
     8161 tgcgcgatcc agttctagca ggtgtattga gtttgattgt tccgggagtc ggccaactct
     8221 acaacggccg catactggca ggaattctct ggttgatttt cacgccggga ttttggctcg
     8281 gaaccggcgg cacgctcggc tggatctgtc acatcgtctc cgcctactgc gcctactcct
     8341 acgctaaaga acaccccgtg cgctactgag gcttgtccgt ttttttcgga ggcatcgcgc
     8401 ggggaatgtc gttaggatcg agcggttcct ccagcttcgt tgatccacct ctcaacaccg
     8461 gcggcagctt cgaaaccgga atagtcaccg tcgccaccgg ctccactcgc ctcagaatcg
     8521 cgccaccacg cccggcaatc caaacgttgt tgccgccgcg ataagcaatc gagaacaacg
     8581 cagtgctcgt tatcgacggc tgaatctccc acgtcgcacc ggcgtccttg ctgtgaatga
     8641 tattcccctg ctctccgacc acaagcacat cgtttcgcga cgcgacgtca acgccaaaca
     8701 gatttccatt cacgccgctc tcgagatcct tccacgacac gccgccatca tcggtgcgca
     8761 acacaagccc gcgcgcgccg acgatgtatc cgcgcacc
//
LOCUS       DASWTX010000069         1908 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_369349, whole genome shotgun sequence.
ACCESSION   DASWTX010000069 DASWTX010000000
VERSION     DASWTX010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1908)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1908)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1908
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_369349"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            180..1055
                     /locus_tag="VGD38_01150"
     CDS             180..1055
                     /locus_tag="VGD38_01150"
                     /inference="COORDINATES: protein motif:HMM:NF025268.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEY0726643.1"
                     /translation="MMKVSRLAIFCLLGVVVFTTRSGNAAPEDRWLYGSAGYARAVEL
                     QRELNVPLVVYFYTDWCPYCHALDSDYLPAAPVKQYLRGVVKVRINPEHGRAEREIAK
                     QYGVRGYPSFFIMRNPASQPASVNPFRRSGKNLTPAEFVSACQQAESFSAQTKLTRAP
                     APVTANAAGPTQQQAKSQIVNVPPSAPNFINNAPLPTLDAVLAKYVAAIGGRDAQRKI
                     TSRVSKGRVDVPGVSFGGKLEVYAKAPNKSLTIMNAEPAGPDQRRLRRPHELEFDEQR
                     FGRRQQRRPRRGDRR"
     gene            1009..1407
                     /locus_tag="VGD38_01155"
     CDS             1009..1407
                     /locus_tag="VGD38_01155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726644.1"
                     /translation="MDVDNNVDRAAVIDADFYREIRLAELYSRIKLVGKVKEGFRQVY
                     LVEAVPKGGAAENLYFDVESGLLVRRDVTRNTPNSSVRVEVYFSDWRDVDGVKLPFKI
                     TQILPKMRFVITFDDVKQNVPVDDAMFVRP"
     gene            complement(1404..>1908)
                     /locus_tag="VGD38_01160"
     CDS             complement(1404..>1908)
                     /locus_tag="VGD38_01160"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY0726645.1"
                     /translation="GIALFNESILAERQFDASTYYRSLIIVALTSLVGNFLGGWIASK
                     WRMNRLLAVAMMLLAGSLVALPHVSTQAHVAIYAAVMGLAGGFVIVIFFSFWSAAYGR
                     THLGKIQGVAQALTVIASALGPLVLAETVSRTGSYASIFYLLTLVVVVLALLAWFVKV
                     PRALPEN"
BASE COUNT          440 a          549 c          558 g          361 t
ORIGIN      
        1 agaagccacc ttcgtccgtc agacagattg gctttaagag gcagcgctaa gtcttgtgaa
       61 gcgcctgatg ctcagcaaaa aagacttgat cgcgccaatt tgcgagaggt atgctgctcg
      121 gcggtagtca gaagcccttc acctcatatc caaacgtttc attccgatag acaggcgcaa
      181 tgatgaaagt atcaagactc gcaatctttt gtttactggg cgttgtcgtt ttcaccacgc
      241 gatcggggaa cgcggcgccg gaggatcggt ggctctatgg gtcggcgggt tatgcgaggg
      301 cggtggagtt acagcgtgaa ttgaatgttc cgctcgtcgt ttatttctat acggactggt
      361 gcccgtactg ccatgcgttg gacagtgatt accttccggc ggcgccggtg aagcagtatt
      421 tgcgcggggt cgttaaagtg cggatcaatc ccgagcacgg ccgggccgaa cgcgagatcg
      481 cgaaacaata tggcgtccgc ggatatccgt ctttcttcat catgcgcaac ccggcttcac
      541 agccggcgag cgtcaatccg ttccgtcgca gtggcaagaa tctcacgccc gctgagttcg
      601 tgagcgcgtg ccaacaggcc gagtcgttct cagcgcaaac taagctcacc agagcgccgg
      661 cgccggtaac agcgaacgcc gctggtccaa cacagcagca ggcgaagtcg caaatcgtca
      721 acgtgccgcc ttcagcgcca aacttcatca acaacgctcc acttccgacg ctcgacgccg
      781 tgctcgcgaa atacgtcgcg gccatcggcg ggcgcgacgc acaacgcaag atcacgagcc
      841 gcgtgagcaa gggaagagtc gacgtgccgg gcgtgagctt tggcggcaag ctggaggtct
      901 acgccaaagc gcccaacaag tcgttaacga taatgaatgc cgaacccgcg gggcctgatc
      961 aaagaaggct tcgacggccg cacgagctgg agtttgacga gcaacggttt ggacgtcgac
     1021 aacaacgtcg accgcgccgc ggtgatcgac gctgatttct atcgcgagat acgactcgcg
     1081 gagctgtact cgcgcatcaa gctcgtcggc aaagtgaagg aaggttttcg ccaggtctat
     1141 ctggtcgaag cggtacccaa aggcggcgcg gccgagaatc tgtatttcga cgtcgagagc
     1201 ggtctgctcg ttcgtcggga tgtgacgcgt aatacaccca acagttcggt gcgtgttgaa
     1261 gtttacttca gcgattggcg cgacgttgac ggcgtgaagc tgccgttcaa gatcacgcag
     1321 atcctgccga agatgcgatt cgtgatcacg ttcgacgacg tcaaacagaa cgttccggta
     1381 gacgacgcca tgtttgtgcg tccctaattc tccggcaacg cgcgcggcac tttcacgaac
     1441 cacgccaaca gcgccagcac cacgaccacc aacgtcaaca ggtaaaagat cgacgcgtac
     1501 gaacccgtgc ggctgacggt ttcggcgagc accagtggcc caagtgcgga cgcgatcacg
     1561 gtcagcgcct gtgcgacgcc ttgaatcttg ccgagatgcg tccgcccgta agccgcactc
     1621 cagaaactaa aaaagataac gatcacaaag ccaccggcta gtcccatcac tgccgcgtag
     1681 atcgcgacgt gtgcctgagt cgagacgtgc gggagggcga cgagtgagcc cgccagcaac
     1741 atcatcgcca ctgccagcag acgattcatc ctccacttcg aagcgatcca gccacctaag
     1801 aagtttccca cgagcgaggt tagggcgacg atgatcagac ttcggtaata agtggaagcg
     1861 tcaaactggc gttcagccag gatcgattcg ttgaaaagcg cgataccg
//
LOCUS       DASWTX010000070         2379 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_87362, whole genome shotgun sequence.
ACCESSION   DASWTX010000070 DASWTX010000000
VERSION     DASWTX010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2379
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87362"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            73..>2379
                     /gene="ileS"
                     /locus_tag="VGD38_01165"
     CDS             73..>2379
                     /gene="ileS"
                     /locus_tag="VGD38_01165"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEY0726646.1"
                     /translation="MSTETPLDLKKTVNLPQTGFSQKANLTQSEPARLQKWAELDLYR
                     LIREARAGRDKFILHDGPPYANADIHLGTAMNKILKDFIVKSRSMMGYDAPYVPGYDC
                     HGLPIEQHVERALAKKGKKKNDLSVESFRRACREHAQNALKNQTRDFKRLGILGEWDD
                     PYLTMSNHYEAETARMFGRFVERGYVYKGARPVYWCIVDQTALAEAEVEYHQHTSPSV
                     YVKFPLRSDPASIDPALAGRKVFVLIWTTTPWTLPANLGIAVHPDFEYSAFEHGDEVY
                     IVASELVEAVARKCELAEQNENGEHLPPKVLARFPGAKLDRLEAGHPWIDRPSLLMVG
                     EHVTLGGEADAETELDVSEAVKKASDSKAGTGAVHTAPGHGHDDFVIGKRYGLEIYCP
                     VDNAGRFTPEVEHFAGLRVFEANDKIVEFMREKGVLLFSEKYDHRYPHCWRCKNPVIF
                     RATPQWFIAMDQAGEETARSLRAGAIAETEERVKWIPAWGRDRMRNMLKGRPDWCVSR
                     QRVWGVSIPVFYCAKCNAEVADATVINHVADIFERESGDAWHTRSAEELLPPGYTCKG
                     CGATEWTKETDILDVWFDSGTSSIAVLENPRREELRWPADVYIEGGDQFRGWFNSSLM
                     IGVAAHDRAPYETVITHGWTLDAQGRAMHKSAGNAVEPEKVIKQSGAEIIRLWCASSN
                     YFDDMRASDEILQRVMDGYRKLRNTARFALGNLHGFDPSRDTVPVEEMEEIDRWALAE
                     LNRVTAKALAAYEAYEFHNVYHALYQFAT"
BASE COUNT          492 a          655 c          766 g          466 t
ORIGIN      
        1 gggagctggg attaaagccg atggctggtc gaattccaag aaacgctctg ttagtatcta
       61 ccacttacgc ttatgtccac agaaacgccg ctcgatctca agaagaccgt taacttgccg
      121 cagactggct tctcgcaaaa agccaacctg acgcaaagcg aacccgctcg tttgcagaaa
      181 tgggccgaac tcgatcttta ccggctgatc cgcgaggccc gcgccggacg agacaagttc
      241 atcctgcacg atggtccccc atacgccaac gccgacatcc atctcggcac ggcgatgaac
      301 aagattctca aagacttcat cgtcaagtcg cgcagcatga tgggctacga cgcgccttac
      361 gtgccgggtt acgactgtca cggcctgccg atcgaacaac acgtagaacg cgcgctggcg
      421 aaaaagggca agaagaagaa cgacctgagc gtcgagagtt ttcgccgcgc ctgccgcgag
      481 cacgcgcaga acgcgctgaa gaaccagacg cgcgacttca aacgtctcgg catcctcggc
      541 gagtgggacg atccgtacct gacgatgtcg aaccactacg aagccgagac cgcgcgcatg
      601 ttcggccgct tcgtcgagcg tggttacgtc tacaaaggcg cgcgtccggt ttactggtgc
      661 atcgtggacc aaacggcgct cgccgaagcc gaggtcgagt atcaccagca caccagcccg
      721 tcggtttacg tgaagtttcc gttgcgcagc gacccggcat cgatcgatcc ggcgctcgcg
      781 ggccgcaaag ttttcgtgct gatctggacc actacgccgt ggacgttgcc ggccaacctc
      841 ggcatcgcgg tccatcctga ttttgagtac tcggcgttcg agcacggcga cgaggtttac
      901 atcgtggcga gcgagctggt cgaagccgtc gcaaggaaat gtgagctcgc cgagcagaac
      961 gagaacggcg aacacttgcc gccgaaggtg ctcgcgcgtt ttccgggtgc gaaactcgat
     1021 cggctcgaag cggggcatcc gtggatcgat cgcccgtcgc tgttgatggt tggcgagcac
     1081 gtcacgctcg gcggtgaagc cgacgcggaa accgaactcg acgttagtga agctgtcaag
     1141 aaagcgtctg atagcaaggc gggaacgggc gctgttcaca ctgcgcccgg tcacggtcac
     1201 gacgactttg taatcggcaa acgttacggg ttggagatct attgcccggt cgataatgcg
     1261 ggccgtttca cgcccgaggt cgagcatttc gcaggcctac gtgtgtttga ggcgaacgat
     1321 aagatcgtcg agttcatgcg cgagaagggt gtgctgctgt ttagcgagaa gtacgaccac
     1381 cgctatccgc actgctggcg ctgcaagaac ccggtgatct ttcgtgcgac gccgcagtgg
     1441 ttcatcgcta tggaccaggc gggcgaagaa accgcgcgat cgttgagagc cggggccatc
     1501 gccgagaccg aggaacgtgt gaaatggatt ccggcgtggg gccgcgatcg gatgcgcaac
     1561 atgttgaaag ggcgtccgga ttggtgcgtc tcgcggcagc gcgtttgggg tgtttcgatc
     1621 ccggttttct attgcgcgaa gtgtaatgcg gaggtggccg acgcgacggt gatcaatcac
     1681 gtcgccgaca tcttcgaacg cgagtcgggc gatgcgtggc acacgcgatc ggctgaagag
     1741 ttactgccgc cgggttacac gtgtaaaggc tgcggcgcga cggaatggac caaggagact
     1801 gacattctcg acgtgtggtt cgacagtggc acttcttcga tcgcggtgct cgagaatccg
     1861 cggcgtgaag agttgcgctg gcccgcggat gtttacatcg agggcggcga tcagtttcgt
     1921 ggctggttca attcgtcgtt gatgatcggc gttgcggcgc acgatcgtgc gccgtacgag
     1981 actgtgatca cgcacggctg gacgctcgat gcgcaagggc gcgcgatgca caagtcggca
     2041 ggcaatgcgg ttgagcctga aaaggtgatc aagcagtcgg gcgctgagat cattcgtttg
     2101 tggtgtgcgt cgtcgaatta tttcgacgac atgcgcgcgt cggacgagat cctgcaacgc
     2161 gtgatggatg gttatcgcaa gctgcgcaac acggcgcggt ttgcgctcgg caatctgcac
     2221 gggttcgatc cgtcgcgtga cactgtgccg gttgaggaga tggaagagat cgatcgctgg
     2281 gcgctggcgg aattgaatcg cgtgacggcg aaagcgctcg cggcttatga agcttacgag
     2341 tttcacaacg tctatcacgc gctttatcag tttgcgacg
//
LOCUS       DASWTX010000071         3286 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_412434, whole genome shotgun sequence.
ACCESSION   DASWTX010000071 DASWTX010000000
VERSION     DASWTX010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3286
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_412434"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(146..1525)
                     /locus_tag="VGD38_01170"
     CDS             complement(146..1525)
                     /locus_tag="VGD38_01170"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEY0726647.1"
                     /translation="MNTLIIVLGLLLCGGVVWFLPNLGPGALVLCAVVSLPTLFVVIR
                     KHEERTFLLRLFVIAVMCRIVLATGIQIGGMESFFGGDANTYDIFGKSLLQSWYGDAY
                     HSARYAGFIKSGAGAWGMLYVVAGVYALIGENLYAVQLINASVGAATAVVVYYVAQTL
                     FNNVRVSRLAAVLVAFFPSLILWTSQALKDGLIVLALALAMLATLRLMEKVTLGYVLV
                     LTTCLLSLLSLRFYIFYMMVAAVMGSFFIGMKAINAQGFIQRFLAVALMGLAFTWFGV
                     LRYAGAQFDRYANLKTIQMSRTDQANAGSGFGKDVDVGTTEGALTAIPIGLVYLLFAP
                     FPWDMATLRQSITLPEMLIWWTAFPLLVLGLWFALRHRLRQVAPIVIFTTMLTIAYSV
                     FQGNVGTAYRQRSQLLVFYFIFVAVGAILLKEKAEDRRRQQQLAKLELAELQAARLAA
                     RRQGMHPQT"
     gene            complement(1533..2258)
                     /locus_tag="VGD38_01175"
     CDS             complement(1533..2258)
                     /locus_tag="VGD38_01175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726648.1"
                     /translation="MRRTSRSRLLVLALFAPLPSFLKRSLYRWFFRYKIGKGVRIGIS
                     IIDAGECVIENDVQIGHFNVVTRVEKLTIRDHARIGHLNIIRGGSEVSLGRYSEIIRL
                     NEINSIPDPDVVNQIDPRFLLGNGSIVTTGHKIDFTDRVEIGRRVILGGRNSSLWTHN
                     RQRTLPITIGEKVYIGSEIRMAPGSAIPARSIVGIGSVITARLAEEGKLIAGVPAKTI
                     KDLSSEDQFLIERETRPDLPDDV"
     gene            complement(2265..>3286)
                     /locus_tag="VGD38_01180"
     CDS             complement(2265..>3286)
                     /locus_tag="VGD38_01180"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY0726649.1"
                     /translation="LVSQVHGENATPKYVNPAAEFVRGDVCDRAAVDAALEGIDVVYH
                     EAAEVGVGQSMYEIERYVRANDLGTAVVLEAVLARRPQIRKLMVASSMSIYGEGAYTC
                     ADCGPIAPQLRPTEQLRDRRWEVECPNCGKNLAPAPTSEEKPLFPTSVYAVTKQDQEQ
                     FCIAVGRSYGIPTVALRYFNVYGTRQALSNPYTGVCAIFSARLLNGNRPLIFEDGEQT
                     RDFVHVSDIVRANLLALETDRANYQAINVGTGRPTSVRTVCDLLAKGLGLDLEPEIVA
                     KYREGDIRHCVADISKAKSLLGYEPQVSLEQGIPELLSWVRAQAAQDQVESATAELES
                     RQLVR"
BASE COUNT          759 a         1038 c          868 g          621 t
ORIGIN      
        1 tgctcgctcg ttgagttgag tgtaggttgg gtatgaaggg accaccaact tcgttggtgg
       61 gattgcccgc tctttggggt gggtgtaggt tgggtatgaa gggaccaccg acgatgtcgg
      121 tgggatttgg agccctaacg cttcgctaag tctgggggtg catgccttgg cggcgggccg
      181 ccaagcgggc ggcctggagt tcggcgagct ccagtttcgc gagctgttgc tgccggcgcc
      241 ggtcttccgc tttctccttc aacaatatcg cgcccacagc cacaaagatg aaataaaaaa
      301 ccagcaactg cgatcgctgc cggtacgccg ttccgacgtt tccctgaaac accgagtacg
      361 caatcgtgag catcgtcgtg aagatcacga tcggcgccac ctgccgcaga cggtgcctca
      421 gcgcaaacca caaccccagc accagcaacg gaaacgccgt ccaccagatc aacatctccg
      481 gcagcgtaat gctctgccgc aacgtcgcca tgtcccacgg aaacggcgcg aacagcagat
      541 acacgagccc aatcgggatc gccgtcagcg cgccctccgt cgtgcccacg tcgacgtcct
      601 taccaaaacc cgatcccgca ttcgcctggt ccgtgcggct catctgaatc gtcttgaggt
      661 tcgcgtaccg gtcaaactgc gcgcccgcat aacgcaacac cccaaaccac gtgaacgcga
      721 gccccatcaa cgcgacggcc agaaagcgtt gaataaatcc ctgcgcgttt atggccttca
      781 tcccgatgaa gaagctgccc atcaccgccg ccaccatcat gtagaagatg tagaagcgaa
      841 gactcagcag cgacagcaaa cacgtcgtca gcaccagcac ataacccaac gtgactttct
      901 ccatcagccg cagcgtcgcc agcatcgcga gcgcgagcgc gagcacaatg agcccgtctt
      961 tcaacgcctg cgacgtccac aaaatcagcg acgggaaaaa cgccacgaga actgcggcca
     1021 aacgagaaac acggacgttg ttgaagagcg tctgcgcaac gtaatagacg acgaccgcag
     1081 tcgccgctcc cacggaagca ttgatgagct ggacggcgta gaggttttcg ccaatcaaag
     1141 catagacacc ggcgacgacg taaagcatgc cccacgcgcc ggcgcccgac ttgataaacc
     1201 cggcgtagcg cgccgagtga taagcatcgc cataccacga ctgcaacagc gactttccaa
     1261 agatatcgta cgtgtttgcg tcgccgccga agaaactctc catgccgccg atctgaatcc
     1321 ccgtggccag cacgattctg cacatcacgg cgataacgaa gagacgcaac agaaaagtgc
     1381 gttcttcgtg tttgcggatg acaacgaaga gcgtcggcaa agacacaacg gcgcagagca
     1441 ctaacgcgcc tggccccagg ttcgggagga accatacaac gccgccgcaa agcagcagcc
     1501 ccaaaacgat gatcagggta ttcatttaca gctcaaacgt cgtccggaag atccggccgg
     1561 gtttctcgtt caattaaaaa ctggtcttca ctgctcagat ccttgatggt cttcgcaggc
     1621 acgccggcga ttagtttacc ctcttccgcc agccgtgcag taatcacgga gccaattccc
     1681 acgatcgagc gcgcgggaat cgcgcttccc ggcgccatcc gaatctccga accgatataa
     1741 actttctcgc cgatcgttat cggcagcgtc ctttgccggt tgtgcgtcca caacgacgag
     1801 ttgcgcccgc caagtatcac gcgccggcca atctcgaccc gatcggtgaa gtcgatcttg
     1861 tggcccgtgg tgacgatact gccattcccc aaaagaaacc gcgggtcgat ctggttcacc
     1921 acgtcgggat cgggaatgga gttgatctca ttcagccgaa tgatctccga gtatcttccc
     1981 aaacttacct cagaaccgcc acgaataata ttcaaatgac cgatgcgcgc gtggtccctg
     2041 atcgtcagtt tttcaactcg cgtgacgacg ttgaaatgac ctatctggac atcgttttca
     2101 atcacacact cgccggcgtc gataatgctg atcccgatgc ggactccctt gccgatttta
     2161 taccgaaaaa accagcgata aaggcttcgc ttcaggaacg acggcaacgg cgcgaacaaa
     2221 gccaatacca gcaaacggga tctgctcgtt ctgcgcatcg tcgctcaacg taccaactgt
     2281 ctactctcca attccgcggt agcgctttca acctggtcct gcgccgcttg tgcgcggacc
     2341 cacgacaaca attcgggaat tccctgctcg agcgaaacct gcggctcgta acccagcaac
     2401 gacttcgctt tcgaaatatc ggcgacgcaa tgccggatgt cgccttcgcg atacttcgcc
     2461 acgatctccg gctcgagatc gagtcccaaa cctttcgcca gcaaatcgca gacggtgcgt
     2521 actgacgtcg gtcttccagt gcccacgtta atcgcctggt aattggcgcg gtcggtttcg
     2581 agcgcgagca ggttcgcgcg cacgatgtcg ctcacgtgaa cgaagtcgcg tgtctgttcg
     2641 ccgtcttcaa agatcaacgg acggttgccg ttcaaaagac gcgcggaaaa gatcgcgcaa
     2701 acgccggtgt aaggattcga cagcgcctga cgcgtgccgt agacgttgaa ataacgcaac
     2761 gcgacagtcg gaatgccata cgagcggcca acggcgatac aaaactgttc ctggtcctgt
     2821 ttagttactg cataaaccga agtcggaaac agtggcttct cttcggacgt cggcgcgggc
     2881 gcgaggttct tgccgcagtt cggacactcg acttcccaac gacgatcgcg cagttgttct
     2941 gtcggacgga gttgcggcgc gatcggacca cagtcagcgc acgtgtaagc gccttcgcca
     3001 tagatcgaca tcgacgaagc aaccatcagt ttcctgattt gcggacggcg cgcgagcacg
     3061 gcttccagca ccaccgccgt gccgagatcg ttcgcgcgaa catagcgctc gatctcatac
     3121 atcgactgcc cgacgccgac ttccgccgct tcatgataaa cgacgtcgat gccttcgagc
     3181 gccgcgtcaa ccgcggcacg atcgcaaacg tcgccacgca caaactccgc cgcgggattc
     3241 acatacttcg gcgtcgcatt ctccccgtgt acctgcgaca cgagcg
//
LOCUS       DASWTX010000072         5174 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_174060, whole genome shotgun sequence.
ACCESSION   DASWTX010000072 DASWTX010000000
VERSION     DASWTX010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5174)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5174)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5174
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174060"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..4830)
                     /locus_tag="VGD38_01185"
     CDS             complement(<1..4830)
                     /locus_tag="VGD38_01185"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SBBP repeat-containing protein"
                     /protein_id="HEY0726650.1"
                     /translation="MIFVSAQNDQNNLPQATAQDGAPGARDPAARTRVAQNFGKLPLS
                     FEINKGQIDQAVKFLSHGPGYDLFLTANEAVLRVPKPRALKEDKSKESAPGKGPAAAK
                     ADPDANVREGTVLRLKFIGANGTPEVEGQDELPGKVNYFIGNDPAKWQRNVPTYKKAY
                     FKDVYPGIDVVHYGNQQELEYDLIVAPRANPKLIKFSVEGAEKIRLDKSGKLLLTLKH
                     GEVSLNKPVIFQLDKNGGRREVKGGYSVNGNEVRFKLDNFDSSKTLIIDPVLSYSTLL
                     GSSGNDTAFGIAVDSQGNAYVTGTTNALNFPTTAGSFKATSTNFGSFISKLNPTGTAL
                     VYSTYLSTNNGSTNARAIAVDSSGNAYVTGSTSGSDFPTVNGLKTTSTFFKTTDSAAN
                     WNNQNTGLVGGGNALAIARNTPNTIYASTTSGFFRSTDGGTTWTKPPSTGLSNSNFAN
                     CIGVDPSNASVVYLGLSFGFFKSVDGGNNWTQLNSAPLNFPSVFAIVFDPVTPSTIYI
                     GTNTGVFKSTDSGATWITQNNFGIAGTPNIRALAIDPNAPLTLYAGTTNNGIFKSTNG
                     GGVWTATNTGMGTSNPTNISAIVIDPANSSTIYTGNGFGFFGGGINKSTNGGASWAPL
                     TNGVPDSGINAMAATATAVYAALNSGGLIKTTNGGTNWTDASAGLSSPNVRAIVAHPT
                     NAAALFAGTSESSNVEAFVTKLNPSGSGLLFSTLVGGSRDEFGNGIAVDGSGNIVIAG
                     QSTSNNFPVANAVQSAPTANDTCVNAFVTKLNPSVPSYVFSTLLGGNSCDIANGVAVD
                     TTGNVYVTGETASNNFPTANAFQPGFVGPQFNSDAFVTKLTPAGAFVYSTYLGGSGAD
                     EGAAIAADASGNAYVTGFTNSTDFPTMNPLQPSIGSNFSTDVFLTKFNPSGSALVYST
                     YLGGSANDVGRGVVVDSANNAYVTGSAASNEFPLVQGALRTKSPVYKSIDGAAHWSND
                     NYGFTGTSLTGMAIDPSRPSTVYVSTLTGVFKTTNGGRTWSPINTGLDSIIVNTIVID
                     PVTPNTLYVGVPGFSPNSGIYKTTNGGANWNRHSNGMVATDITSLAIDPVTPNTLYAS
                     VSSGSGSKIYKTTDGAGNWALTGNVTLLQPTAVVIDPLNHNTIYATDWSHPGGVFKST
                     NAGVTWQLVGGNQAGSFPRTLAVSPFTAGLVYVDAGQGLFKSTDGGNNWTPVPNRAGK
                     VVFDPVNPSTIYLLSSSQFTSLLGIFKSIDGGQTWLPIIKGLNTAQAFEMAIDPTKPS
                     TLYLASTQSNGLDAFVTKFNAAGSALIYSTFIGGPINTQNFSGVAAQAFGIALDPNGN
                     AYITGLTSSPGFPVSANAFQPFVRGFDDAFISKLSMSYIISGQVVDGGGAPIGGAEIV
                     LNDGTSLRSVFSESDGSYQFSQLRDGGNFTITANKPHFTMAPASQTFNNLKADQVQNF
                     TATASAAAFHTISGKVSENGNGLAGVTVTLSGSQPGIRTTDSNGNYSFELVAGGNYTL
                     TPSIVGFNFAPPSSTFNNLSAPQTANCTANRQSFVVTNTNNHGAGSLRDAIINANATL
                     GADTIVFNIPGAGVKTINLLNTLPEITERVTIDATTQPGYAGTPLVELDGLGVGTGNG
                     "
BASE COUNT         1036 a         1397 c         1571 g         1170 t
ORIGIN      
        1 accgttacca gtcccgacgc ccaatccatc aagctcgacg agcggcgtgc ccgcgtagcc
       61 gggttgagtc gtcgcatcga tcgtcacgcg ctcggtgatc tcgggcagtg tattcaacag
      121 attaatcgtc ttcactcccg caccgggaat gttgaagacg atcgtgtctg cgcccaacgt
      181 ggcgttggcg ttgatgatgg catcgcgcaa cgagccggcg ccgtggttgt tagtgttcgt
      241 gacgacaaaa ctctggcggt tcgccgtgca gtttgcagtc tgcggtgcgc tcaggttgtt
      301 gaacgtcgaa ctgggcggcg cgaagttgaa accgacgatc gaaggcgtca gggtgtagtt
      361 gccaccggcg acgagctcga atgaatagtt accgttgctg tcagtggtcc tgattccagg
      421 ctggcttccg ctgagcgtca cggtaacgcc ggccagaccg ttgccgttct cggatacctt
      481 gccgctgatc gtgtggaacg cagcggcact cgcggtggcg gtaaagttct gtacctgatc
      541 ggccttcaga ttgttgaaag tctgactcgc cggagccatc gtgaagtgcg gcttgttcgc
      601 cgtgatggtg aaattgcctc catcgcgcag ttgcgagaac tggtaagaac catcgctctc
      661 actgaagacc gatctgagcg acgttccgtc gttcaaaacg atctcggcgc cgccgatagg
      721 cgcgccgccg ccatccacaa cctggccgct gatgatgtac gacatcgaca gcttcgaaat
      781 aaacgcgtcg tcaaaaccac gaacgaaagg ttgaaaggca ttcgcgctaa ccggaaagcc
      841 aggcgacgac gtcagaccgg tgatgtatgc attcccgttc gggtcgagcg cgatgccgaa
      901 agcctgcgcg gcaacaccgg aaaagttttg cgtattgata ggaccaccga tgaaggttga
      961 atagatcagc gcgctgccgg cggcattgaa cttcgtaaca aacgcgtcca aaccgttgga
     1021 ctgcgtcgac gcgagataga gagtcgatgg tttcgtggga tcgatcgcca tttcaaatgc
     1081 ctgcgcggtg ttgagcccct tgatgatcgg caaccacgtc tgcccgccgt ctatgctctt
     1141 gaagataccg agcagactgg tgaactgaga gctcgatagc aagtagatcg tcgacggatt
     1201 taccggatcg aaaacgactt tccccgcgcg gtttggtaca ggcgtccagt tgttgccgcc
     1261 atcggtgctc ttgaacaaac cctgtccggc gtcaacgtac acgagtcccg ccgtgaacgg
     1321 actcacggcg agcgtgcgtg ggaacgaacc agcctggtta ccgccgacaa gctgccacgt
     1381 cacgccagcg ttggtgctct tgaaaactcc gccggggtgg gaccagtcgg ttgcatagat
     1441 cgtgttgtgg ttcagcggat cgattaccac cgctgtcggc tgcaacagcg ttacattccc
     1501 ggtcagcgcc caattacccg cgccgtcagt ggtcttataa atcttgctgc cggaaccact
     1561 tgagacactt gcgtacagcg tgttcggcgt caccggatcg atagccagac tggttatgtc
     1621 ggtcgccacc attccgttac tgtggcggtt ccagttagct ccaccattcg tcgttttgta
     1681 gatgccgctg ttgggactga aacccggaac gcccacgtag agcgtgttcg gcgtaaccgg
     1741 atcgatcacg atcgtgttca cgatgatgct gtcgaggccg gtgttgattg gcgaccatgt
     1801 tcggccgccg ttggtcgttt tgaagacgcc cgtcagtgtt gacacgtaaa cggtcgaggg
     1861 ccgcgaggga tcgatcgcca tgcccgtgag cgaagtgcct gtgaaaccgt aattgtcgtt
     1921 gctccagtga gcggcgccgt cgatgctctt atagaccggg ctcttggtac gcagcgcgcc
     1981 ctgcacgagg gggaattcgt tcgacgcggc agaaccggtc acgtaagcat tgttagccga
     2041 gtcgactacg acaccgcggc cgacgtcatt tgccgagccg ccgagatacg ttgaatagac
     2101 cagcgctgaa cccgaagggt tgaacttcgt caggaacacg tccgtcgaga agttgctgcc
     2161 gatggaaggc tgcagcggat tcatcgtcgg aaagtccgtt gaattcgtga agcctgtgac
     2221 gtaagcgttg ccggatgcat cagcggcgat tgccgcgccc tcgtcggcgc cactgccgcc
     2281 gagataagtc gaatagacga atgcgccggc gggcgttagc ttcgtaacga acgcgtctga
     2341 gttgaattgt ggtccaacga atcccggttg aaatgcgttc gccgtcggga agttgttgga
     2401 ggcggtctct cccgtcacat aaacattgcc ggtggtgtcc acagctacgc cgttcgcaat
     2461 atcgcatgag ttgccgccga gcaaagtcga aaagacgtaa gacggaacac tcggattcaa
     2521 cttcgtgacg aaagcattca cgcaggtgtc gttggcagtc ggcgctgact gcacggcgtt
     2581 cgccaccgga aaattattcg aggtcgactg gcccgcgatc acgatgtttc cgcttccgtc
     2641 gactgcgatg ccgttaccaa actcgtccct gcttccgccg accagagtcg aaaacagcag
     2701 gcccgatcct gacggattca acttcgtgac gaaagcctcg acgttactac tctcagaggt
     2761 cccggcgaac agggctgcgg cattagtcgg atgtgcgacg atggcccgaa cattcgggct
     2821 cgagagaccg gcgctggcgt cggtccagtt agttccaccg tttgtcgttt tgatcaaacc
     2881 gccgctgttg agggcagcgt aaacggccgt agcggtcgcg gccatcgcgt tgataccgga
     2941 atccggcacg ccgttcgtga gcggggccca cgaagcgccg ccattcgtac tcttgttgat
     3001 gccgcctcca aaaaacccaa aaccattgcc ggtgtagatc gtggaactgt tggcaggatc
     3061 gataacgatg gcgctgatgt tcgtcggatt gctcgtgccc atcccagtgt tcgtcgcagt
     3121 ccagacgccg ccgccgttcg tcgacttgaa aataccgtta ttcgtcgtgc ccgcgtagag
     3181 cgtgagcggc gcattcggat cgatggctaa ggcgcgaatg ttcggcgtgc ctgcgatgcc
     3241 gaagttgttt tgcgtgatcc acgtggcgcc gctgtcggtg ctcttgaaca caccggtgtt
     3301 cgtgccgatg taaatcgtcg acggtgttac cggatcgaac acgatcgcaa acacggatgg
     3361 gaaattcagc ggcgctgagt tgagctgggt ccagttgtta ccgccgtcga ctgatttgaa
     3421 gaaaccaaac gagagtccga ggtaaacgac cgaagcgttc gacggatcca ctccaataca
     3481 attggcgaag ttggaattgg acaacccggt tgatggcggc ttggtccagg tcgtgccgcc
     3541 gtcagtgctg cggaagaatc cggacgtggt cgacgcgtag atcgtgttgg gcgtattgcg
     3601 ggcgatggcg agcgcgttcc cgccgccgac gagtcccgta ttttgattgt tccagttcgc
     3661 ggccgagtca gtggtcttga aaaaagtgct ggtggttttt aagccgttga cagtgggaaa
     3721 gtcggagccg gaagttgagc cggtgacgta agcgttgccg ctcgagtcta ccgcgatggc
     3781 cctggcgttc gtggagccgt tattagtgct gagataggtt gagtagacca gcgcggtgcc
     3841 ggtcggattc agtttcgaga tgaacgatcc gaaattggtg gaagtagctt tgaacgatcc
     3901 ggcggtggtc gggaaattca aagcgttggt cgtaccggtg acgtaggcgt tgccttgcga
     3961 atcgaccgcg atgccgaacg cggtgtcgtt gccgctggaa ccgagcaggg ttgaatacga
     4021 gagaacggga tcgatgatga gtgtcttgct ggaatcgaag ttgtcgagtt tgaacctgac
     4081 ttcgttaccg ttgacggaat acccgccttt tacttcacgg cggccgccgt ttttatcgag
     4141 ctgaaagatc acgggcttgt tcaaggacac ttcgccgtgc ttcagcgtca gcagtaattt
     4201 tccgctcttg tcgagacgaa ttttttccgc gccttcgacg ctgaatttga tcagtttcgg
     4261 attcgcgcgc ggggcgacga tgaggtcgta ttcgagctct tgctggttgc cgtaatggac
     4321 cacgtcgatg ccgggataga cgtctttgaa ataagctttt ttatatgtgg ggacattgcg
     4381 ctgccacttg gcggggtcgt tgccgatgaa gtagttcacc ttgccgggca gttcgtcctg
     4441 cccttcgact tccggcgtgc cgttcgcgcc gataaacttc aagcgcaaca ccgtgccctc
     4501 gcgcacgttt gcgtcagggt cggctttcgc ggccgctggt cctttgccgg gcgcggattc
     4561 ctttgacttg tcttctttca gcgcacgcgg cttgggcacg cggagcacag cttcgttcgc
     4621 ggtcagaaac agatcgtaac ccgggccatg cgacaggaac ttcaccgcct ggtcgatttg
     4681 tcctttattg atctcgaagc tgagcggtaa cttgccaaag ttttgcgcga ctctggtccg
     4741 tgctgccgga tccctcgcgc cgggcgcgcc atcctgtgcc gtcgcttgtg ggaggttgtt
     4801 ttgatcgttc tgtgccgata caaaaatcac gcctgcaaaa gccgtcagca ggcagacgat
     4861 tgcgattaca cacagagccc tattggtgcg agagaagggg ggaataaatg aaatcatctg
     4921 ttaaagaaac tttctaaagc tgccggcgag ttgacctggg atttgccgga ctagagactt
     4981 gagcctgact ggcgccattt tggtgcgaag ccgcacagaa gtcaatcgct atgatccaga
     5041 ggggttttga acggttgccc cggcccaaca caataccgca atcgtgtcgc tgctcgtcgt
     5101 ctttgcatga caatcggagc gttttgattg cggtggtcca acacagagtc taaggagact
     5161 ttacttttcg actg
//
LOCUS       DASWTX010000073         3656 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_109420, whole genome shotgun sequence.
ACCESSION   DASWTX010000073 DASWTX010000000
VERSION     DASWTX010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3656
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109420"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..607)
                     /locus_tag="VGD38_01190"
     CDS             complement(<1..607)
                     /locus_tag="VGD38_01190"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: protein motif:HMM:NF013514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEY0726651.1"
                     /translation="MSSLEVLLNKSIPELSKRFVERRRPVPKGLLEALDVDPRQGAQQ
                     LAKRIRERYRENRSEGQRLHVLLRFEIELWSQGYGMVAGVDEAGMAPLAGPVVAGAVV
                     LPQNYKLRGLNDSKKILDPEKRDELAQQIKQDAICWSVGIAEVEEIDKINIYHAGLLA
                     MQRAVEGLSAKPDFILVDARRIPHCETPQRGIIRGDALSASI"
     gene            693..1274
                     /locus_tag="VGD38_01195"
     CDS             693..1274
                     /locus_tag="VGD38_01195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726652.1"
                     /translation="MNLSPGTRMRLAGLLPLFFFLAQGVHYWRIDQLGHLCWMCNIGN
                     LVMALGLFFEKPLLVRVAAIWTIPGLIVWFLYVVLTWGVFLTSTLAHVGGITVAAFAL
                     RAYRMDRNSWIYALAWLLVMQVISRLFTAPELNVNVAHAVQPGWEQTFASYWSFWLVL
                     TIAAVVVLWLSGLVWRTLWPAFTASTRAAASLS"
     gene            1998..2768
                     /locus_tag="VGD38_01200"
     CDS             1998..2768
                     /locus_tag="VGD38_01200"
                     /inference="COORDINATES: protein motif:HMM:NF024934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEY0726653.1"
                     /translation="MNNNLLEEDVLPIGLATKNQLLVELLAAPGARSILLPHLRAVSL
                     DRNEVLYEQGDRIESVYFPTTCLVSNLTIMEDGTTLETSMVGREGLIGISAVLGSGVS
                     RHWLWVSISGTALQLETRFLDSLFLHNEDALKALLRFYRAMITQVSQRCVCNTRHTVL
                     ERLCCWLLMVHDRVSNGNLRLTQEMIASRLGARRAGITVAAGVLQELQAIEYRRGLLH
                     IINRNVLEQTACECYTMMGKEFNLFGSKSPAAHSGLSL"
     gene            complement(2747..>3656)
                     /locus_tag="VGD38_01205"
     CDS             complement(2747..>3656)
                     /locus_tag="VGD38_01205"
                     /inference="COORDINATES: protein motif:HMM:NF020037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEY0726654.1"
                     /translation="HSVRGLPYHEVRRGIDTAFRERSTISITDLELDHAVEGTGQYIN
                     LTIMNMQVEHGAAELAVITATDITEQVQLKRRLEAVQREQSELVGELSTANKRFAAMN
                     KELQDANEELQAANEELMLTQEELQATNEEFEATNEELQATNEELETNNEELQATNEE
                     LQTTNDELTARTAELQEFAKQNRLDQLQLSSLLERFPHYVMVLRAEDLTIQRLNPAYR
                     RLLGERNVEGLPVNEVFSGNDVDHLVKRLKTVVRDGQGVKTPAIYATVPGADHNHERL
                     IHTIVPIHDQTGVVVERLFLYSERPE"
BASE COUNT          723 a          998 c         1013 g          922 t
ORIGIN      
        1 cgatgctggc tgataacgcg tcgccgcgga tgattccgcg ctgtggcgtt tcgcagtggg
       61 gaatgcggcg cgcgtcgacg aggatgaagt ccggcttcgc actcagacct tcaaccgcgc
      121 gttgcatcgc gagcaacccg gcgtgataga tgtttatttt gtcgatctct tcgacttcgg
      181 cgatgccgac tgaccaacag atcgcgtcct gcttgatctg ttgcgcgagc tcatctcgtt
      241 tctcaggatc gagaatcttc ttcgagtcgt tcaagccacg cagtttgtaa ttctgcggca
      301 ggacgacggc gcccgcgacg accggacctg cgagcggcgc cattccggct tcgtcaacgc
      361 ccgcgaccat accatagcct tgcgaccaaa gctcgatctc aaaacgcagc agcacgtgca
      421 gccgctgacc ttccgaacga ttctcgcgat atcgttcgcg aatgcgtttc gcgagctgtt
      481 gcgcgccctg gcgcgggtcg acgtccaatg cttcaagtaa acctttaggt accggacggc
      541 ggcgctcgac aaagcgcttg ctcagttctg ggatagactt gttgaggagg acttccagag
      601 aactcatgtt tcggagacag tctctgttca cagccacttg ttgtcaagac gacgcttggt
      661 ttttttgccg gtgtgcgcga ggatagaacc cgatgaatct ctcccccgga acccgaatgc
      721 gtctcgccgg cttgctgcct ctcttctttt ttctcgcaca gggcgttcac tactggcgga
      781 tcgatcaact cggacatctg tgctggatgt gcaacatcgg caacctcgtc atggcgctcg
      841 gtctgttttt cgaaaagcca ttgctggtcc gcgtcgcagc gatctggacg atccccggtc
      901 tcatcgtgtg gtttctttac gttgtactca cgtggggtgt gtttctgacg tcgacgcttg
      961 ctcacgtcgg cggcatcaca gtggcggcgt tcgcgctcag ggcgtatcgc atggatcgaa
     1021 actcatggat ctacgctctt gcgtggttac tggtgatgca ggtgatctca cggctcttca
     1081 ccgcgcccga gctcaacgta aacgtcgcgc acgcggtcca accagggtgg gagcaaacat
     1141 tcgcgtccta ctggagcttc tggctagtgc tgacaattgc cgcagtggtg gtactgtggc
     1201 tgtcaggact agtgtggcgg acgctctggc cggcattcac agcgagcacc cgagcggcgg
     1261 cgagtttgtc ctgagtgctc gatcagatga gtcactaact cacaaaggtc cgaaggatga
     1321 ctgggcttaa cgagataagc ctgggcgcca catttcaaag ccagttcaga atcggccgcg
     1381 taagcggctg ccgagtaaaa caagatcgga gttgttttat caaactgccg aatctgcctg
     1441 cagaggtcca acccggagcc atctggtagc caggaatcaa gcaagtagag atcgaactct
     1501 ccggcgcctg ccagtgcgac accgctttcg attgttgatc cggttactac atcgtaactc
     1561 ttctgggcga gcaggaaagt gactagttca cgcgtgtccg cgtgatcttc tatgtagagg
     1621 atgcgccggc ttctttcatt tggcatattt aatggcggta cggggggaag ttgtccgtca
     1681 cacaccatga aactgttgtt gcttgttatt taggttgtcg gtcgtaacag aaagattaag
     1741 gccgaggcac cctatgcttc tcaaggtatg ggaaagaata cagcgcctcg gccacccgct
     1801 tattgtttga agagatttta ggcccaataa caagtcttgt cagtacgctt tcgaacacat
     1861 taaagaataa tttgatgaca cctgttactg tacgcacgcc gacaaaccac gtatgatccg
     1921 ttggagctgg ctcgctcttc tatccagact cttaattctg ggtacccgtt ttccctggat
     1981 ctttatggag tactggtatg aacaacaact tgttagaaga agacgtgctt ccgataggtc
     2041 tggcgacgaa gaatcagctt ctagtcgagt tgcttgccgc gcccggcgcc cgaagtattc
     2101 tcttacctca cctgcgagca gtttcactcg atcgtaacga ggtcctgtac gaacagggag
     2161 accggatcga gtcagtctac tttcctacca cctgcctcgt ttccaatctc acgataatgg
     2221 aggacggaac aacgctcgag acttcgatgg tcggccgcga aggcctcatc ggtatctcgg
     2281 ccgtgctggg cagcggggta tcgcgacact ggctttgggt ttcgatcagc ggcactgcgc
     2341 ttcagctcga aacaagattt ctcgatagtc ttttcctgca caacgaagac gcgctcaaag
     2401 cactgctgcg cttctaccgg gcaatgatca ctcaagtatc acaacgttgt gtctgcaaca
     2461 ccaggcacac ggtgttggaa cggttatgct gctggctgct gatggtccat gatcgcgtca
     2521 gcaacggcaa cttacgtctt acgcaggaga tgattgcgag ccggctcggc gctcgccgtg
     2581 cgggtattac tgtcgctgcc ggtgttttgc aggaactgca ggcgattgaa taccgtcgcg
     2641 gactgcttca catcattaat cgtaacgtgt tggagcagac ggcctgcgag tgttacacca
     2701 tgatgggaaa agaattcaat ttattcggct cgaaaagccc agccgctcac tcaggtcttt
     2761 cactgtagag aaacaaccgt tcgacgacaa ctccggtttg atcgtgaatc ggtactattg
     2821 tgtgaatcag gcgctcgtgg ttgtgatcgg ctccgggaac cgtggcgtaa atcgcggggg
     2881 ttttgacacc ttgtccgtct cgcacgaccg tttttagccg cttgaccagg tggtccacat
     2941 cgttgcccga aaagacctca ttaacgggaa gtccttccac gttgcgctcg cccagcaacc
     3001 ttctgtaagc ggggttgaga cgttgaatcg tgagatcctc agctctcagg accatcacgt
     3061 aatgcgggaa gcgttcgagc aaagaggaga gttgcaactg gtcgaggcgg ttttgcttcg
     3121 caaattcctg tagctcggca gtgcgcgccg tcagctcgtc gttcgttgtt tgcaactctt
     3181 cgttggtagc ctgaagttcc tcgttgtttg tttcgagctc ttcattcgtg gcctgcaact
     3241 cttcgttggt ggcttcgaac tcttcgttag tcgcctgcaa ctcttcctga gtgagcatca
     3301 actcttcatt ggccgcttgc agctcttcat tcgcgtcctg caattccttg ttcatggcgg
     3361 cgaagcgctt gttggcagtg cttagttcgc cgacgagctc tgactgttcg cgctgcacgg
     3421 cttcgagcct tcttttgagt tgcacctgtt cggttatatc ggtggccgtg atcaccgcga
     3481 gttcggccgc gccgtgttcg acctgcatgt tcatgatcgt gagattgatg tactggcccg
     3541 ttccttccac ggcatggtcc aactccaggt cggtgatgct gatcgtcgaa cgttcgcgaa
     3601 aggcggtatc aatcccccgc cgcacttcgt ggtatggcag tccacggacg ctgtga
//
LOCUS       DASWTX010000074         6585 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_87384, whole genome shotgun sequence.
ACCESSION   DASWTX010000074 DASWTX010000000
VERSION     DASWTX010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6585
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87384"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..516)
                     /locus_tag="VGD38_01210"
     CDS             complement(<1..516)
                     /locus_tag="VGD38_01210"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY0726655.1"
                     /translation="MSVDKDLVSVQQARDLVEAAHRAQAEVAQFDQAKIDRICEAMAK
                     AALREAVRLGAMAVEETGYGVPDDKREKNRFAAEDVWNYFRGLRTKGVVSESKDVVEI
                     ASPRGVVAGIIPSTNPTSTAIFKILIAIKSRNSVVLSPHPSAAKCINETARVMREAGV
                     KEGLPGDAIGCM"
     gene            complement(680..946)
                     /locus_tag="VGD38_01215"
                     /pseudo
     CDS             complement(680..946)
                     /locus_tag="VGD38_01215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001183618.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
     gene            1238..1765
                     /locus_tag="VGD38_01220"
     CDS             1238..1765
                     /locus_tag="VGD38_01220"
                     /inference="COORDINATES: protein motif:HMM:NF024252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY0726656.1"
                     /translation="MAATIGEQLRLAREARGIGLREICEQTRISVHYLEAIEANDYKR
                     LPGGVFNRSFIKAYAKCVGYDEREAIEGYTRFLREHGGESSDDVNTHPLQSKVYTDTP
                     ATRSPWLTVLLAILILGILTAAALAALYWFQKRTAAAPNGESVFALSQNHTPMYNDLT
                     SANIDLGAHDHIRYF"
     gene            1743..3206
                     /gene="guaB"
                     /locus_tag="VGD38_01225"
     CDS             1743..3206
                     /gene="guaB"
                     /locus_tag="VGD38_01225"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEY0726657.1"
                     /translation="MITSDIFEGLTFDDVLLVPARSDVLPYETDTATQFTRNIRLQIP
                     LCSAAMDTVTEASLAIALAQQGGIGVIHKNLSIERQAEEVDKVKRSESGMIVDPVTIR
                     PDRPVREALQVMERFHISGVPVVDETGHLVGIITNRDRRFETRFDIPVSEVMTKQPLV
                     TVPVGTTLEQAKTVLQKHRIEKLLVVDDDKHIKGLITVKDIQKAIKYPSAAKDNLGRL
                     RVAAAIGATGDYRERADELVKARVDCLVIDTAHGHSSRVIDAVRDIKARHPETDLIAG
                     NVGTTAGAQELIDAGVDAIKVGIGPGSICTTRVVTGAGVPQITAIASCVQAARGRVPV
                     ISDGGVKFSGDVAKAIAAGADVVMIGSLFAGTEEAPGEVILFQGRSFKTYRGMGSIGA
                     MREGSRDRYAQDMGVTESKLVPEGIEGRVPYKGTLADMVTQLVGGLRSGMGYTGCHNI
                     SEFQEKTRFLRITSAGLKESHVHDVIITKEAPNYRLE"
     gene            3221..4117
                     /locus_tag="VGD38_01230"
     CDS             3221..4117
                     /locus_tag="VGD38_01230"
                     /inference="COORDINATES: protein motif:HMM:TIGR00147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEY0726658.1"
                     /translation="MPNRRATLISNPKTGRYGARRLRPIADVASQLRSLGLDVDLKLT
                     TAPGEATEIAARAARNGSSDVIVAGGDGTINEAIQGLAGTSARLAIIPRGTGNVLARE
                     LKLPLDDEQATVVAARGNSRRIHLGRATVEATGASRLFVLMAGIGLDASVVQRVQPQL
                     KKRIGRGAFWVSGLSHLADWKPSSFTLEIEGQSYTGTFAAIGKAARYGGDLAITPGAR
                     LEEPEFEICIIETTSRATYLRLLSYAVRSGMPRNKPGVRFVKAARVEAKGDAPVQVDG
                     ELIGTLPMRFEIASESLEVIVP"
     gene            complement(4139..6034)
                     /locus_tag="VGD38_01235"
     CDS             complement(4139..6034)
                     /locus_tag="VGD38_01235"
                     /inference="COORDINATES: protein motif:HMM:NF036516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEY0726659.1"
                     /translation="MRTRPGKLLAVLAVVAALCSVVAAQEPPLKSITYRLAMTQPTSH
                     LFEVAIEVELPAAMNDKPLQFQMPKWSPGRYAVFDFAKNVQEFRAFDGTCAPATTCAS
                     RAARAATRVDGHTWSVAPSGSAALTVSYKVFANDLSGTFSQLDERHANYNGHSIFMYV
                     VGHKPDPVKLTIHPPAGWKIVNGRMDQPGQTEWRFPNWDIMTDTPTEIAPDWTQDSFE
                     VDGKKYHVVVHSFGPEGGKRAALVRDIEKIVRAEIAMWGPPEFSDYTFLIHYAADDHS
                     GDGMEHLTSTQIIEPGALAEPGVYDETLGTVSHEFFHVWNVKRLRPVELGPWDFTQPL
                     KTRALWVAEGFTNYYGHLMMRRAGIWDDKKFLNRQAQTIRNIESAPGSKLMSAEESSL
                     SAPFIDDAPHAQLTNLWNTSISYYPKGELIGMVMDLLIRGRTKGKSSLDDVMRRMYDE
                     FYLKSPNSSYYLRGRGYQTEDLERVVVELAGPEFRDFFRRYVRDVEVLPYDEAFGYVG
                     LRLIKTTAKEPFDAGLSIEFEGDLAMIENVRNYSPAETAGLQKDDEIVSLAGRRVTKD
                     SWLKTLGRYKKGDSVAVVVKRDRRTIKASIVLGDPERFEYRIEEAANVTEQQRGVRKA
                     WLSGKGI"
     gene            6082..>6585
                     /locus_tag="VGD38_01240"
     CDS             6082..>6585
                     /locus_tag="VGD38_01240"
                     /inference="COORDINATES: protein motif:HMM:NF013570.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanyl-tRNA editing protein"
                     /protein_id="HEY0726660.1"
                     /translation="MSATERLYYNDSHLIEFQARVIDVTERVSGWTAVVLDRTAFYPT
                     GGGQPSDTGTLNGARVVECIDDGERGVLHVVQGLAPARDAIVSGRVDWLRRLDHMQQH
                     TGQHILSQAFINLFNAPPKSFRVLESSCEIDVDLSNPSTETIERAVELANNVVWEDRV
                     ITIHNVSS"
BASE COUNT         1360 a         1938 c         1871 g         1416 t
ORIGIN      
        1 catgcaaccg atcgcgtcac ccggcaaacc ttctttgaca cccgcttcac gcatcacacg
       61 cgctgtttcg tttatgcact tcgcggcgga tggatgcggc gacaacacca ccgaattgcg
      121 cgatttgatt gcgattagaa tcttgaatat tgccgtcgag gttggattag tggaaggaat
      181 gatgcctgcg acaactccgc gtggactagc gatctcaact acgtctttcg actcggaaac
      241 aacgcctttc gtacgcaggc cgcgaaagta gttccaaaca tcctcggcgg caaaacggtt
      301 cttctcgcgc ttgtcgtcag gaactccgta cccggtttct tcgaccgcca tcgcgccgag
      361 ccgcaccgct tcgcgcaacg ccgccttcgc catggcctca cagatgcgat cgatcttcgc
      421 ctgatcgaac tgggccactt cggcctgtgc gcgatgcgct gcctcaacca gatcgcgcgc
      481 ctgttgcact gaaactagat ctttatcgac tgacataacc cctcactgtc aggagtcagt
      541 tttaccggct ccgttccttg tttgcctcgc gtgcgccgga actgagcgag cgtccctggt
      601 cgccctgacc gagttgaccg cgcgcgccac caccttgcaa agcgctctca tccgggctca
      661 aaccggttcg tccgttgacg ggcagtacgc gttcaacctc ggcgtgcggc ctcggaatca
      721 cgtggacgct gatcagctcg ccgactcttc gcgccgcagc cgcacccgcg tcagtcgcgg
      781 ccttcaccgc gccgacgtcg ccgcgcacaa agatcgtgac gtagcccgcg cctatgtact
      841 ctttgccgag cagttgcaca ttcgctgctt tgaccatcgc atcggcggcc tctactgcac
      901 ccacgaatcc tttggtctca accattccga gtgcgtctaa gggcatctga ttatcctcac
      961 tttgtctatt gtaaagatta aaactaaaaa ccgggtcttg ttggcgtcaa cctatcactg
     1021 caagcgacaa agagcaagag agcgagatct ttcacgggca caaagtttga caccgtttag
     1081 cagcgcgggc tatattgcgg aaaaagtggg agttgtcgga ttcatcgagc ggcccgacac
     1141 gatcaagcag gttcgtaaac acatttaagt aatcttgctc cggagcttcg cccggaggta
     1201 gtctaccaag ccaacgccag gaaccgagcg attggagatg gcagcgacta tcggcgaaca
     1261 attgcgactc gcacgcgagg cgcgaggtat cggccttcgc gaaatctgcg agcagacgcg
     1321 gatctctgtc cactacctcg aagcaatcga agccaacgac tacaagcgcc tgcccggcgg
     1381 cgtcttcaat cgcagcttta ttaaggccta cgcgaagtgc gtcggttacg acgagcgcga
     1441 agcgatcgaa ggttacaccc gttttctgcg cgaacacggc ggcgagtcga gcgacgacgt
     1501 caacacgcat ccgctccagt ccaaggttta cactgacaca cccgcgacgc gctcgccctg
     1561 gttgaccgtc ctcctcgcga ttctgatctt agggatactg accgcagccg ccctcgccgc
     1621 gctttactgg tttcagaaac gtacggcggc ggctcccaac ggcgaatctg ttttcgcact
     1681 cagccaaaat cacactccta tgtataatga cctcacatct gcaaatattg atttaggggc
     1741 acatgatcac atcagatatt tttgaaggac ttactttcga cgacgttctc cttgttcccg
     1801 cccgctctga cgttctgcct tacgagactg acaccgccac gcaattcacg cgcaacatcc
     1861 ggctgcagat tcctttgtgt tcggccgcga tggacactgt gactgaagcg tcgctggcga
     1921 tcgctctcgc ccagcaaggc ggcatcggcg ttattcacaa gaacctcagt atcgaacggc
     1981 aggcggagga ggtcgacaag gtcaagcgat cagaatcggg aatgattgtc gacccggtga
     2041 ccatcagacc ggaccggcca gtacgcgaag cgctccaggt aatggagcgc tttcacatta
     2101 gcggcgttcc cgtcgtggat gaaaccggac atctcgtcgg catcatcacg aatcgcgacc
     2161 ggcgtttcga gacgcgcttc gacattccgg tttcggaagt gatgacgaaa caaccgctcg
     2221 tcactgttcc ggtcggcacc acgctcgagc aggcgaaaac cgtcctgcaa aaacaccgga
     2281 tcgagaagct gctggtcgtc gacgacgaca aacatataaa aggactgatc acggtcaaag
     2341 acattcagaa agcgatcaag tatccgtcgg cggcgaagga caacctggga cggctgcgtg
     2401 tcgcggcggc gatcggcgcg accggtgatt atcgtgaacg tgctgatgaa ctggttaagg
     2461 cacgtgttga ttgtctcgtg atcgatacgg cgcacggtca ctcgtcacgc gtgatcgacg
     2521 cagtgcgcga catcaaggcg cggcatccgg aaacggatct gatcgcgggc aatgtcggca
     2581 ccaccgcggg cgcgcaggaa ttgatcgatg caggtgtcga tgcgatcaaa gtcggtatcg
     2641 gtccgggatc gatctgtacg acgcgcgtcg tgaccggcgc gggcgttccg cagatcacgg
     2701 cgatagcgag ctgtgtgcaa gccgcacgcg gcagggtgcc ggttatttcc gacggtggtg
     2761 tgaagttttc tggcgacgtc gcgaaggcga ttgctgccgg cgccgatgtt gtgatgattg
     2821 gatcgttgtt tgctggaact gaagaagcgc ccggcgaagt gattctgttc cagggccgct
     2881 cgttcaaaac ataccggggc atgggatcga ttggcgcgat gcgcgagggc tcgcgcgatc
     2941 gttacgcgca ggacatgggc gtcacggagt cgaagctcgt gccggaaggc atcgaaggcc
     3001 gcgtgcctta caaaggaact ctcgccgaca tggtcacgca actcgtcggc gggcttcgtt
     3061 ccgggatggg atacacgggt tgtcacaaca tcagcgagtt tcaggagaag acgcgtttcc
     3121 tgcggatcac atctgccggg ttgaaggaat cacacgtgca cgacgtgatc attacgaagg
     3181 aagccccgaa ctatcgcctc gagtaagctg ctttatccgt gtgcccaatc gacgagcaac
     3241 cctgatctcc aatcctaaaa cgggccgtta cggtgcgcgc cgtttaagac cgattgctga
     3301 cgtggcctca cagctccgct cacttggtct cgacgtcgat ctgaaactca ccactgcgcc
     3361 tggtgaagcg acggaaatcg ctgcgcgtgc tgctcggaat ggaagttccg acgtgatcgt
     3421 tgcgggcggt gacggaacga tcaatgaagc gatacaggga ttggctggaa cgtcggcgcg
     3481 tttggcgatc attccgcgcg gcaccgggaa cgttctcgcg cgtgaactga agcttccgct
     3541 tgatgacgaa caggcaactg ttgttgcggc gcgtgggaat tcgcgtcgca ttcatctcgg
     3601 gcgcgcgact gtcgaagcga ctggagctag tcgtcttttt gttttgatgg ccgggattgg
     3661 tctcgatgct tcggtcgtgc aacgcgtgca gccgcagttg aagaagcgca ttgggcgagg
     3721 cgcgttttgg gtttcgggtt tgagtcatct ggctgactgg aaaccgtcgt cgttcacgct
     3781 cgagattgag ggtcagagtt ataccgggac gtttgcggcg attggcaaag cggcgcgtta
     3841 tggtggagac ctcgcgatca cgcccggggc gcgtctcgag gagccggagt ttgagatctg
     3901 tattattgaa acgacgagcc gcgctactta tctgcgcctg ctttcctacg ccgtgcgctc
     3961 cggcatgcct cgcaacaaac ccggagtgcg ctttgtgaaa gccgcgcgcg ttgaagcgaa
     4021 gggcgacgca ccggtgcagg tcgacgggga gttgatcggt acgctaccga tgcgcttcga
     4081 aatcgcatcg gagtcgctgg aagtcatcgt gccgtgattg gtttgttttt tatcggcttt
     4141 aaattccctt cccgctcagc cacgccttgc gtactcctcg ctgttgctct gtaacgtttg
     4201 ctgcttcttc gatgcgatac tcaaaccgtt ctgggtcgcc aagaacgata cttgctttta
     4261 tagtgcggcg gtcgcgcttc acgacgactg cgacagaatc acccttcttg taccgcccca
     4321 aggtcttcag ccatgagtct tttgttaccc tacgtccagc gagcgaaacg atctcatcgt
     4381 ccttttgcag tcccgcggtt tcggccggtg agtagttgcg aacgttttcg atcattgcga
     4441 ggtcgccctc aaactcgatc gacagacccg catcgaacgg ctctttcgcc gtagttttga
     4501 tcaaccgaag acctacgtac ccaaaagctt cgtcgtacgg caacacttcc acatcgcgaa
     4561 cgtaccgtct gaagaaatcg cgaaactccg gaccagcaag ctccacaacc acacgctcga
     4621 ggtcttcggt ttgataacca cgcccgcgca agtaataact actgttcgga ctcttcaaat
     4681 aaaactcgtc atacatgcgt cgcatcacgt catcaagcga cgacttccct ttcgtccgcc
     4741 cgcgaatcaa caggtccatc accatcccga tcaactcacc tttcgggtaa taactgatcg
     4801 acgtgttcca tagattcgtc agttgcgcat gcggcgcatc gtcaatgaac ggcgccgaca
     4861 acgacgactc ctccgcgctc atcaacttac tccccggcgc gctttcaata ttccgaatcg
     4921 tctgcgcctg ccggttgaga aacttcttat cgtcccaaat acccgcgcgc cgcatcatca
     4981 gatgcccgta ataattcgtg aacccttcgg cgacccacaa cgcacgagtc ttgagcggct
     5041 gcgtgaaatc ccatggacca agctcaacgg ggcgcaatcg cttcacgttc cacacatgaa
     5101 agaactcgtg cgaaacagtg cccagcgtct cgtcataaac gccgggttcc gcaagcgcgc
     5161 cgggctcgat aatctgcgtg gaagtgaggt gttccattcc atcgcccgaa tgatcgtcgg
     5221 ccgcgtaatg aatcagaaaa gtgtaatcag aaaactccgg cggcccccac atcgcaatct
     5281 cagcgcgcac tatcttctcg atgtcgcgca cgagcgccgc gcgtttcccg ccttcgggtc
     5341 cgaacgaatg aaccacgacg tgatacttct tgccgtcgac ttcgaaactg tcctgcgtcc
     5401 aatcgggcgc gatctcggta ggcgtgtcgg tcatgatgtc ccagttggga aagcgccatt
     5461 ccgtctggcc cggttggtcc atgcggccgt tgacgatctt ccaacccgca ggcggatgaa
     5521 tcgtcagctt caccggatcg ggtttgtgac cgacgacgta catgaagatc gagtggccgt
     5581 tgtagttcgc gtgacgttcg tcgagctggg aaaacgtgcc ggacagatcg ttggcgaaga
     5641 ctttgtacga gacggtgagc gccgcgctgc cggatggcgc cacgctccac gtgtgtccgt
     5701 caacacgcgt ggccgcgcgc gccgctctgc tggcgcaggt cgttgcgggc gcgcaggttc
     5761 cgtcgaatgc gcgaaactcc tgcacgttct tggcaaagtc gaagacggcg taacgtccgg
     5821 gcgaccactt gggcatttga aactgaagtg gtttgtcgtt catcgcggcc ggcagttcta
     5881 cttctatggc cacttcgaag aggtgcgacg tcggctgcgt catcgcgagc cggtaagtga
     5941 tcgatttgag cggcggttcc tgagcagcaa cgacgctgca caacgcagcg accaccgcca
     6001 gcaccgctaa cagcttgcct ggacgagttc tcatgcgcgg attctatgtt aatctgcgta
     6061 ctctgtggct aaatatttcc gatgtctgca accgaacgtc tctattacaa cgactcgcac
     6121 ctgatcgagt ttcaagcgcg cgtgatcgac gtcaccgagc gtgtcagcgg ttggaccgcc
     6181 gtggtcctcg atcgcacggc gttttatccg actggcggcg gtcaaccgag tgacacgggc
     6241 acgctcaacg gcgcgcgtgt tgtcgagtgt atcgacgacg gcgagcgcgg cgtgctgcac
     6301 gttgtgcagg gtctcgcgcc ggcgagagac gcgatcgtgt cggggcgagt tgattggctg
     6361 cggcgtttgg accacatgca acagcacacg ggccagcaca tcctgtcgca agcgttcata
     6421 aatctcttca acgcgccgcc gaagagtttt cgcgtgctgg aatcatcgtg cgagatcgac
     6481 gtcgacttga gtaatccttc gaccgagacg attgaacgcg cggttgagct tgcgaacaac
     6541 gtcgtgtggg aagaccgcgt gatcacgatt cacaacgtga gctct
//
LOCUS       DASWTX010000075         4200 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_282741, whole genome shotgun sequence.
ACCESSION   DASWTX010000075 DASWTX010000000
VERSION     DASWTX010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4200)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4200)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4200
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282741"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2367)
                     /locus_tag="VGD38_01245"
     CDS             complement(<1..2367)
                     /locus_tag="VGD38_01245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726661.1"
                     /translation="MIVGHLATTHWTMVGLGNVRASAETNQETTVIIVNERALVGPNS
                     GVQVRGGRLFLPVATIAQALGDTLSSDAASRLVTVRRQTGTTAVFNAPLNEVRENGAV
                     VLTVSGTADLVFPPAANELMLPAEIVAALLDVTVRRDEKNAILITRKGIEAETRIRSG
                     AKQPRWELFQLEYDYNFTRYSEAGDHSLVLRGTGRVGDARLSFIANSAMGVTRNSSRP
                     SLQGGTVRLDRPNGQSFVGGEFGTGTDVEFLSAAVRGGLVQLPLHRVRLDVFGGQTTS
                     GIYERPLNSNPNSFSPLDVRYDTKIFGAIVTTATEAPRQRDFTLSAGAMHFGGSNRKG
                     NMAAGGLKYISGLNRFQADLAVGQFSGIDRDGNLTRGTSAAATFTGSYHLTDEVLLQG
                     RYTHVGQVFLSPQSGIHTPTNAAAAGVSWQPRRWITAGLSGSTATTPGKRGDFNRYVT
                     ASLSLAPENSLPNIFFSHTQSGTTQLRSSQFTLLTATKKIDRWNMFFNGSRIKTFGST
                     ALNGQLGGNVRINEWTTLEVSQAFGSTGVLTGMATWQMSNLFHNRLGFSAGFGYTRSS
                     TTPFQTSQHLSGSVKLPRNTALQFSYLKTQTGTTALLNLHGLFFSSKRAERAINGSLA
                     ELNSYGVVSGRVYQDVNLNGRFDPGVDQPQANAKVRVDGSRYVVSDVNGNYRVDSIAR
                     GDHTVYLDLLSVRADLTLLDNTQQLITLDSNRDVMVDFRVVRTGRISGLVWMDSNNNG
                     RLDETEQPLPDVRVVTGSGRDTLTDEKGYFMIGDLPPGEHIILLDEKTL"
     gene            2483..3064
                     /locus_tag="VGD38_01250"
     CDS             2483..3064
                     /locus_tag="VGD38_01250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726662.1"
                     /translation="MPPRRKRLKCHFLFTLAAVVLLLPASAEAQTGRVTMQARVSEIV
                     TLSVPPNFAQGNVDAEVLSTGNTVRITLTSTSGEAPVIRVPLLVRSNSGFKISAAVES
                     TTDSLAQLSITDVRATGTLVSPAAINSLNIPEDFDLEARDFMLASGPRVSLGGTLASP
                     NNALQLTVLIRLKPQPAPGSLVHLTFAAAPLTQ"
     gene            complement(2988..3890)
                     /locus_tag="VGD38_01255"
     CDS             complement(2988..3890)
                     /locus_tag="VGD38_01255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726663.1"
                     /translation="MSFNISRFTTVLILFLVTVVCANAQSPTPEPSPQRGSGISLAPA
                     RIELEMQPGSETTVVVNLDYHSTGEDSQPVRIVASLNDWTIDRDGQVQFARANTMPNS
                     ASPWLIYSPSETTVTPGNLHAIRVTISVPKDATPGDHLTALIVEQRPDNLKLNQNRRQ
                     VVIRYRMAAVFYIKVPQLRRAGSLESLRAEATADQVVVTPLLKNTGNSVVRPLTSLKV
                     TDSAGVSVAELPQKESLPLLGGAELIQPVVLEKRLAPGTYTVKYRIDFQDGSRPTEGI
                     TELVVPQRTSSGPTNPGQVAASNE"
     gene            complement(3907..>4200)
                     /locus_tag="VGD38_01260"
     CDS             complement(3907..>4200)
                     /locus_tag="VGD38_01260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726664.1"
                     /translation="CNQSTHIIRSPFNNDPANSATVGSNGRVAYSSSLANVSGATVIL
                     SGPELSKNNSSKRQQSDGYVFDAIFTLTPQFFASGVSSATLVFSISPGPNVPC"
BASE COUNT          854 a         1164 c         1265 g          917 t
ORIGIN      
        1 caacgtcttc tcgtcgagga ggatgatgtg ttcgccgggt ggcaggtcgc caatcatgaa
       61 gtaacctttt tcatcggtga gagtgtcgcg gccgctacct gttacgacgc gcacgtcggg
      121 taagggttgt tccgtttcat ccagcctgcc gttgttgttg gaatccatcc ataccaaacc
      181 gctgattcgt ccggtgcgca cgacgcgaaa gtcgaccatg acgtcacgat tcgagtcgag
      241 tgtgatgagt tgttgcgtgt tgtccagcaa cgtgagatcg gcacgcacgg acaagagatc
      301 gagatagacc gtgtggtctc cgcgcgcgat gctatcgact cgatagttgc cgttgacgtc
      361 tgacaccacg tagcggcttc catcgacacg cactttcgcg tttgcctgtg gttgatcgac
      421 gccgggatcg aagcggccgt tgaggttcac gtcctggtag acgcggccgg agaccacgcc
      481 gtaggaattc aactccgcga gactgccatt gatcgcgcgc tcggctcgct tggaggagaa
      541 gaacaggcca tgcaggttga gcaacgcggt cgtgccggtt tgtgttttca agtagctgaa
      601 ttggagcgcg gtgttacgcg gtaacttgac tgagcctgag agatgttgcg acgtttggaa
      661 cggcgtggtg ctgctgcgtg tgtaaccaaa cccggcgctg aaccccaggc gattgtgaaa
      721 gaggttggac atttgccatg tggccatgcc ggtgagaaca ccggtgctgc caaacgcctg
      781 gctgacctca agagtagtcc attcattgat gcggacgttg ccgccgagct ggccgttgag
      841 agccgtagag ccaaacgtct tgatgcgcga gccgttgaag aacatgttcc agcggtcgat
      901 ctttttcgtc gccgtcagga gggtgaactg agagcttctc aattgcgtcg tgccgctctg
      961 cgtgtgcgag aaaaagatgt tcgggagtga gttctccggc gcgagactca agctcgcagt
     1021 cacgtaacga ttgaagtcgc cacgctttcc cggtgtcgtc gcagtgcttc cactcagtcc
     1081 cgcagttatc catcgccgcg gttgccaact tacaccggca gccgctgcgt tggtcggcgt
     1141 gtgtatgcca ctctgcggac tcaagaacac ttggcccacg tgagtgtaac gcccttgcag
     1201 taacacttca tctgtcaggt gataagaacc ggtgaacgtc gctgcggcgc tcgtgcctct
     1261 tgttagattt ccatcgcgat cgatgcccga gaattggccc acggcgagat cagcctggaa
     1321 acgatttaga ccggatatgt acttgagacc accggccgcc atgtttcctt tgcggttcga
     1381 gcccccgaag tgcatcgcgc cggcagagag tgtgaagtct cgttgacgag gagcttcggt
     1441 ggcagtggtg acgatcgcgc cgaagatctt cgtgtcgtaa cggacgtcga gaggagagaa
     1501 ggaattcggg tttgagttga gcggcctttc gtatattccg gaagttgttt gcccgccgaa
     1561 gacgtcgagc cggacgcgat gcaaaggcaa ttgaaccagg ccaccgcgaa cggccgcgct
     1621 cagaaattcg acatccgtgc cggtgccgaa ttcgccgccc acaaaactct gaccgttggg
     1681 acggtccagc ctgacagtcc cgccttgcag acttggacga gacgaattgc gcgtcacgcc
     1741 cattgcggag ttggcgataa agctaagtct tgcgtcgccg acacggccgg tgccccggag
     1801 gaccaaactg tgatcgcctg cctcactgta gcgcgtgaag ttgtaatcgt attcgagctg
     1861 aaagagttcc cagcgcggct gtttagctcc ggaacgaatc ctcgtctcgg cttcaatgcc
     1921 tttgcgagtg atcaagatcg cgttcttctc gtcgcgccgc accgtgacgt ccaaaagcgc
     1981 tgccacgatc tcggcgggaa gcatcagctc gtttgctgcc ggcggaaaga ccagatcggc
     2041 ggtgccggaa acggtgagaa ccaccgcgcc gttctcgcgc acttcattca acggcgcgtt
     2101 gaaaaccgcg gtcgtgccgg tctggcggcg aaccgttacg aggcgcgaag ccgcatccga
     2161 gctgagcgtg tcgccgagcg cctgggcgat ggttgcgacc ggaagaaaca gccgtccacc
     2221 gcgtacctgc acgccgctgt tcggcccgac aagcgcgcgt tcgttgacga tgattaccgt
     2281 cgtttcctga ttcgtctccg cagaggcacg cacgttgcca agacccacca tggtccaatg
     2341 cgtcgtcgcc aaatggccaa cgatcaagag gacaacgact cgaagggcga tgggcatggg
     2401 gaatttgggg cgggaattat tcctgaaaat gcggcgctgt gatataagac acgcgaacca
     2461 aaactcagga gcttctcact ttatgccgcc gagacggaaa aggctgaagt gtcattttct
     2521 attcacgctg gccgcggtcg tgttgctgtt gcctgcgagc gcggaggcgc aaaccgggcg
     2581 cgtgacgatg caggcccgcg tcagcgaaat cgtgactctt tcggtgcctc cgaattttgc
     2641 gcagggtaac gtcgacgcgg aggtgttgag cacgggcaac acggtgcgaa taactttaac
     2701 gagcaccagt ggtgaagcgc cggtcattcg cgtgcctttg ctcgtgcgtt caaatagcgg
     2761 tttcaaaatc tctgccgctg tcgaatcgac aacggattcg ctagctcaat tatcaataac
     2821 agacgtgcgc gccaccggaa cgctggtttc gcccgccgcg atcaacagcc tcaacattcc
     2881 ggaagacttc gatttggaag cgcgcgattt catgctcgcg agtggtccac gcgtatcgct
     2941 cggcggcaca ctcgcatctc ccaacaacgc attgcaatta acagttctca ttcgtttgaa
     3001 gccgcaacct gccccgggtt cgttggtcca cttgacgttc gctgcggcac cactaactca
     3061 gtgatccctt cagtcggtct actgccatcc tgaaaatcga tccggtattt caccgtgtat
     3121 gtgcccggtg cgagccgttt ttccagcacc accggctgta ttaattccgc gccaccgagc
     3181 aacggcaacg actctttttg cggcaactcc gcaaccgaaa caccggcgct gtctgtcacc
     3241 ttcaacgaag tgagtggacg aaccacgctg ttgcccgtgt tcttgagcag gggagtgacg
     3301 actacctgat ccgcagtcgc ttcagcacgc aggctttcga gcgaaccggc gcgacgcagt
     3361 tgcggaacct tgatatagaa caccgcggcc atgcgataac gaatcacgac ttgccgccgg
     3421 ttctgattga gcttgaggtt gtcggggcgc tgttcgacga tcagcgcggt caggtgatct
     3481 cccggtgtgg cgtctttcgg aactgaaatg gtgactctga tcgcgtgcag gtttccgggt
     3541 gtcaccgttg tttcggaggg actgtagatg agccagggac tcgccgagtt tggcatcgtg
     3601 ttcgctctcg caaactgcac ctgtccgtcg cgatcgatgg tccagtcgtt caagctcgcg
     3661 acgatgcgaa cgggttgtga gtcttcaccg gtgctgtgat agtcgaggtt tacgacgact
     3721 gtcgtttccg aacccggttg catttccaac tcgatccgcg cgggcgcgag cgagatgccg
     3781 ctgccacgtt gcgggctcgg ctcgggcgtc ggactctgcg cgtttgcgca aaccactgtc
     3841 accagaaaca gaatcagaac tgttgtgaag cgcgaaatgt tgaatgacat cgatcttgag
     3901 aacctttcaa cagggcacgt ttggaccagg cgagatgctg aagacgagag tggcggaaga
     3961 aacaccggag gcgaaaaact gcggcgtcag agtgaagatg gcgtcgaaaa cataaccgtc
     4021 gctttgctgg cgcttcgaac tgttgttttt cgaaagttcc ggaccgctga gaatgacagt
     4081 cgcacccgac acgttcgcga gtgaagatga atacgctacg cggccgttgc ttccgaccgt
     4141 tgctgagtta gcgggatcgt tgttgaaggg cgagcgaatg atgtgcgtgc tttgattaca
//
LOCUS       DASWTX010000076         2207 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_260766, whole genome shotgun sequence.
ACCESSION   DASWTX010000076 DASWTX010000000
VERSION     DASWTX010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260766"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..236
                     /locus_tag="VGD38_01265"
     CDS             <1..236
                     /locus_tag="VGD38_01265"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY0726665.1"
                     /translation="EVDDNTGTFPIHSERMYQAMKGHGATVRLVMLPHEAHGYAGRES
                     IEHVLYEMISWFDRYVKNAPTKMKPEATAQTVK"
     gene            complement(221..619)
                     /locus_tag="VGD38_01270"
     CDS             complement(221..619)
                     /locus_tag="VGD38_01270"
                     /inference="COORDINATES: protein motif:HMM:NF019976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HEY0726666.1"
                     /translation="MPSSPGIELGKLGEAYAAAYLEQLGYQLVAANFTLPVGRNLRGA
                     VVNAEIDLVAYEHNTLCFVEVKTRASDWFAPPQVNVDLRKRRQIARAARAYRQLFELE
                     DQSYRLDVVTVVLAASEPPRVDLLRNYFTV"
     gene            complement(675..>2207)
                     /locus_tag="VGD38_01275"
     CDS             complement(675..>2207)
                     /locus_tag="VGD38_01275"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: protein motif:HMM:NF006006.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEY0726667.1"
                     /translation="FESPAVEPSPAFELDELTITELQQGLQSGKYSSRSLVEKYTDRI
                     NDIDRKGPTLRSVIELNPDAEAIAAALDRERKERGARGPLHGIPILLKDNIDTADRMM
                     TTAGSLALVGSKPAQDAFVAKKMREAGAVILGKTNLSEWANFRSTKSSSGWSARGGQT
                     RNPYALDRNPCGSSSGSGAAIAANLGAAAIGTETDGSIVCPSSANSLVGIKPTVGLVS
                     RAGIIPIAHSQDTAGPMTRSVADAAIILSAIQGFDPRDASTKRTSQPIDLTTALNKDG
                     LRGMRLGIARKHFGFSERVDTIMNDHIAELKKLGAVIVDPADIPTTGKFDESEFEVLL
                     YEFKADLNAYLAGLGPNAPVRSLKDVIDFNERNRDREMPYFGQDIMEKAQAKGPLTSK
                     PYLQALRKNHLLTRTQGIDFIMKKHRLDALIAPTGGPSWPTDWINGDHFSGGYSSASA
                     VAGYPHITVPAGYVFGMPVGISFFGGAYSEGKLIGMAYAFEQATKIRRPPKFSSSVEF
                     SS"
BASE COUNT          448 a          608 c          671 g          480 t
ORIGIN      
        1 gcgaagtcga cgacaacacc ggaacgtttc caattcactc ggagcgcatg taccaggcga
       61 tgaagggcca cggcgcgacg gtgcgtttgg tgatgttgcc gcacgaagcg cacgggtatg
      121 ccggacgcga aagcatcgaa cacgtgcttt acgagatgat ttcgtggttc gacaggtacg
      181 tgaagaacgc gccgacgaaa atgaaaccgg aggcgaccgc tcagaccgtg aagtagttgc
      241 ggagaagatc tacgcgtggc ggctcggacg ccgccaggac taccgtgact acatcgagtc
      301 tataagactg atcttcgagc tcgaataatt gtcgatacgc acgcgccgcc cgagcaatct
      361 ggcggcgttt gcgcaggtcg acgttaactt gtggcggcgc gaaccagtcg gacgcgcggg
      421 tttttacttc gacgaagcag agcgtgttgt gttcgtaggc gacgagatcg atctcggcat
      481 tcacgaccgc gccgcgcagg ttgcgtccga cgggcagagt gaaatttgcg gcgacgagtt
      541 gatagccgag ttgttcgaga taggcagcgg cgtacgcttc gccgagtttg ccgagttcga
      601 tgccaggtga ggacggcata gttgagtttg gccacagatt aacacgaaac cagatcagtg
      661 tttcttcgtt ttggtcatga ggaaaattca accgacgacg agaacttcgg cggacgccga
      721 atcttcgtgg cctgttcgaa cgcgtacgcc atgcctatca acttgccttc gctgtacgcg
      781 ccgccgaaga acgagattcc aaccggcatc ccgaaaacat aaccggcggg gacggtgatg
      841 tgcggataac cggccaccgc ggacgccgat gagtaaccac cgctgaagtg atcgccgttg
      901 atccagtcgg tgggccacga cggtccgccg gtgggcgcga tcagcgcgtc cagccggtgt
      961 ttcttcatga tgaagtcgat gccttgcgtg cgcgtcagca aatgattttt gcgcagcgcc
     1021 tgaaggtagg gtttgctcgt gagtggtccc ttggcttgcg ccttctccat gatgtcctgg
     1081 ccgaagtacg gcatctcgcg atcgcgattc cgttcgttga agtcaatcac gtctttcagc
     1141 gaacgcaccg gcgcgtttgg tccaagtccc gcaagataag cgttgagatc ggctttgaac
     1201 tcgtacagga gaacttcaaa ctccgactca tcaaacttgc ccgtcgtcgg aatgtcagcc
     1261 ggatcgacaa ttaccgcgcc gagttttttc aactcggcaa tgtggtcgtt catgatcgtg
     1321 tcgacacgtt cgctgaaacc gaagtgcttg cgggcgatgc cgagacgcat tcctcgcaag
     1381 ccgtccttgt taagggccgt tgtaaggtcg attggttggg aagttcgctt agttgacgcg
     1441 tctctcggat caaagccctg gattgctgaa agaataatcg ccgcgtccgc aacgctccgc
     1501 gtcattggtc cagccgtgtc ctggctgtgt gcaatcggaa tgattcccgc gcggctcacg
     1561 agcccgacag tcggcttgat cccgacgagc gagtttgccg aggaagggca aacaatcgaa
     1621 ccgtccgttt cggtgccgat cgccgcagcg ccgagattcg ccgcgatcgc ggcgcccgaa
     1681 ccggaactcg atccgcacgg attacgatcg agtgcatacg gattccttgt ttgtccgcca
     1741 cgcgcgctcc atccgctcga cgatttagtt gaacggaagt tagcccactc gctgagattt
     1801 gttttaccaa gaatgaccgc gccggcctcg cgcatcttct tcgcgacgaa cgcgtcctgc
     1861 gcgggtttgg agccgacgag tgccagcgat ccggcagtgg tcatcatgcg atccgcggtg
     1921 tcgatgttgt ctttcaacag gatcggaatg ccgtgcagtg gtccacgtgc accacgttcc
     1981 ttacgttcgc gatcgagcgc ggcggcaatc gcttccgcgt cgggattgag ttcgatgacc
     2041 gaacgcagcg tcgggccttt cctgtcgatg tcgttgatgc ggtcggtgta cttctcgaca
     2101 agcgaacgcg acgaatactt tccggactga agtccctgct gaagttccgt gatggttaat
     2161 tcgtcgagtt caaaagcggg tgatggttcg acggcaggcg attcgaa
//
LOCUS       DASWTX010000077         8704 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_44526, whole genome shotgun sequence.
ACCESSION   DASWTX010000077 DASWTX010000000
VERSION     DASWTX010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8704
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44526"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1030
                     /gene="tyrS"
                     /locus_tag="VGD38_01280"
     CDS             <1..1030
                     /gene="tyrS"
                     /locus_tag="VGD38_01280"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEY0726668.1"
                     /translation="IRKLRAFQELGHTAIFLIGDFTGMIGDPSGKSATRPQLTREEIN
                     ANAETYKQQIFKLLDPEKTVIDFNSRWMDTLGSAGFLRLASHVTVRQILERDDFKQRL
                     DENRPLALHEVMYPLVMAYDSVALEADVELGGTDQKFNLLMGRNLQREYGQESQLAVI
                     MPLLEGTDGVQKMSKSLGNYIGINEPPQEIFGKVMSISDDLMWRYYELCTDLSPSEIA
                     VLKSSERNPRDIKVDLAKRIVADFYTQSDAVAAEEDFVKRFRKKETPDDVEERTVSSG
                     AWKLPRLLVELELAPSMAEARRLIEQGGVYVDGERATQTDLEMNEERSFLLQVGKRRF
                     VRVKGTTN"
     gene            1036..1860
                     /locus_tag="VGD38_01285"
     CDS             1036..1860
                     /locus_tag="VGD38_01285"
                     /inference="COORDINATES: protein motif:HMM:NF018028.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEY0726669.1"
                     /translation="MSATIATEEILVIETPERVPLHFALASIGNRFLACAIDHTIQVL
                     VLVFIVIAGLVIASYSSFANLIESAPKWVLAILILVVFLIFSSYFAFFEWLWSGQTPG
                     KRWLKLRVIREDGRPITFWEACVRNLLRTFDMMPAPFYSIGLISVFVSGRDQRVGDLV
                     AGTVVVREREAEAPEFAQVFASPVSDPALRRSFKPVDFTASLQSLTEAEIQVVETFLR
                     RRWDLADVPRQWMAWRVALPILYKLRPTYDLNTFTYEGFLEELLHRYLREHRFSTN"
     gene            1931..3112
                     /locus_tag="VGD38_01290"
     CDS             1931..3112
                     /locus_tag="VGD38_01290"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HEY0726670.1"
                     /translation="MSKEVFILGGKRTPMGEYVGVLKDISAIDLGAVAARGALAATHV
                     NPEEIDHTVIGNALQTSGDAIYGARHVALKAGVPFERPALTVNRLCGSGIQSIVSGAH
                     MLQLGEAQTCLVGGMESMSQAPHVIRGARSGFALGQGKLEDSLMVALLDTYCNTPMAG
                     TAENLARKFEVSREEQDQYALRSQQEAKRALDAGLLAEEIVPAEVKGRKGTQIVEHDD
                     HPRPDTTLEGLAKLKPAFAKDGFVTAGNASGIVDGAAALVIANEEFIKQRDLTPMGRI
                     VSWAYAGVEPEIMGIGPVPATRAALAKAGLSLNDIDLVEVNEAFAAQYLAVEKELGLD
                     RSRTNVNGGAIALGHPLGATGTRLVLTLLHELHRRNGRYGLATACIGGGQGIAMIVER
                     V"
     gene            3508..6783
                     /locus_tag="VGD38_01295"
     CDS             3508..6783
                     /locus_tag="VGD38_01295"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0726671.1"
                     /translation="MSKIIKLSFAGLLVLALCAISFAQSTTTGAIGGVVTNPNKEVVP
                     GAQVTVKNLETNKEETATTDDTGRFKVANLQPGRYSVTVNSTGFSPMTNENVIVEIGR
                     ETPLEVALSVGPVTGSVDVSAEAPVINTTQQDFSTNINQTSINELPINGRRWSNFALL
                     TPGAVPDGTFGLISFRGISGLLNNNTIDGGDNNQAFFAEERGRTRISYSISQAAIREF
                     QVNTSSYSAEYGRSAGGVVNAITKSGTNEFHGGLFYYQRNNKWGARNPLATRQELING
                     VFTPVGFKPKDVRHQFGGTIGGPIAKDKLFFFFSYDQQKRNFPGLSIFSQGTFLNLST
                     TVRNNIVARGVTSAQVDNALNFLRSLTGPVPRTGDQKLFLPKIDWIINDKNTLTVSYN
                     RLRWESPAGIQTQATNTRAIDNFGDDFVEIDAVNVKLASTITPTLLNEFRMQWGRDNE
                     FQFSQPPAPGEPTNAPGGRSPQTFIQNGFSFGMPEFLERAKFPDERRWQFADTVTMTQ
                     GNHTVKFGGDINFVKDDINNLRFLGGEFNYTGANGLPDFIVDYTNWVTNGGIRSLVPN
                     ADGLPNTGDESRGLCVGSTRRAGKCYAGNFNQGFGVLGLTMKTTDFNFFVQDDWRVTP
                     RFTLNLGLRYEYQLNPDPVAVNPLLPQTANKVDDRNNFGPRIGFAYDLTGDGKTSIRG
                     GWGLYYGRVINSTVYNTLVNTGVGIDQGQRQFTSSANNLPTACTQANPALNANDCPFL
                     PIFPNLLPSSNPPVGAIQFFDDDFQLPQIHQWDFIFEREIARNTVVSASYLGSFGNSL
                     PNFVDTNLPQARRLVSLNVVGGPFGGSTYQTPIFVGARPDTRFAQLTEIRSDVHSKYH
                     ALVLQANRRLTKGLQFQTNYTLSRANDLGQSSVTFTTNNLPFNAFDQQGEDALSNFDR
                     RQKFVASVVWSPNPFADGAAKHIFNGWTFAPILNAFSGQRFTGNVGGSIATTTFGFGQ
                     NCGTANATADCNTPGGGVNGSGGANRFALVPRNFFKQPNIWYVDARLSRRFSITESVK
                     LEFLVEGFNVFNRTQVTGVNTTIYNLSGNTLTFNNPFGTTTGADSTLFRERQVQFAAR
                     FEF"
     gene            complement(6809..7186)
                     /locus_tag="VGD38_01300"
     CDS             complement(6809..7186)
                     /locus_tag="VGD38_01300"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEY0726672.1"
                     /translation="MEHTEGFLKLVADAKTRVREVSVAETEQRLRENKDAKLIDVRED
                     NEWEAAHAKGAIHLGKGIIERDIERTVPDKDTELILYCGGGYRSALATDALQKMGYTN
                     VFSMAGGWKAWKEESTDYTEESV"
     gene            7290..8696
                     /gene="lpdA"
                     /locus_tag="VGD38_01305"
     CDS             7290..8696
                     /gene="lpdA"
                     /locus_tag="VGD38_01305"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA];
                     GO_process: GO:0051068 - dihydrolipoamide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEY0726673.1"
                     /translation="MADEQFDVTIIGSGPGGYVAAIRAGQLGLKAAIVEKDTRLGGTC
                     TLRGCIPTKQMLMSAHVFEQMQHAADFGVEASGIQLAFANVQKRKDKVVLKNSKGIEY
                     LMKKNKVTVFKGTGKLALPGRVEVTDAEGKKQTLQTKNIIIATGSVVRPIPGFETDGK
                     QVVNSDHILELKDVPKSLIVMGSGAVGVEFASVYSRFGAETTIVELLPRLVPLEDEEV
                     SKDLERSFRKRGIKSVVDTKLEKMEKTPTGVKVSGKNGKGEEVTLEAEMLLVAVGRMP
                     YTQGLGLEGTKIKVEKGFIQVDEYQQTAEKGVYAIGDVVPTPLLAHLASKEGIVAVEH
                     MAGRKDVRPINLRLVPNCTYCDPEIGSVGLTEAKAKEQGYDVKVGRFPFSASGKARII
                     GEEEGFVKIVSEKKYDEILGVHIIGPHATELIAEACVAMQLESTADELGRTMHAHPTI
                     SEAVMEAAEGVHDLTVHI"
BASE COUNT         1851 a         2440 c         2571 g         1842 t
ORIGIN      
        1 aattcgcaag ctgcgcgcgt ttcaggagtt gggccacacg gcgatttttc tcatcggcga
       61 cttcaccgga atgattggcg atccgtcggg gaagagcgcg acgcgtccgc agctcacgcg
      121 cgaagagatc aacgcgaacg ccgagactta caaacagcag atcttcaaac tgctcgatcc
      181 ggaaaagaca gtcatcgatt tcaactcgcg ttggatggac acgctcggtt ccgcggggtt
      241 cttgaggctc gcgtcgcacg tcacggtgag acagattctc gaacgcgacg acttcaagca
      301 gcggctcgac gagaatcgtc cgctcgcgtt gcatgaagtg atgtacccgc tggtgatggc
      361 gtacgactcg gttgcgttgg aagccgatgt cgagcttggc ggcacggatc agaagtttaa
      421 tttgctgatg ggccgcaacc tgcaacgtga gtacgggcag gagtcgcagc tcgcggtgat
      481 catgccgttg ctcgagggga ctgacggtgt gcagaagatg tcgaagagtc ttggcaatta
      541 catcggcatc aacgaaccgc cgcaggagat cttcggtaag gtgatgtcga tcagtgatga
      601 tctcatgtgg cgctactacg aactttgtac cgatttatct ccctctgaaa tcgccgtgtt
      661 gaagagcagc gagcggaacc cgcgtgatat caaggttgac ctcgcgaaga gaatcgttgc
      721 cgacttctat actcagtctg atgcagtggc tgctgaggaa gattttgtta agcggtttcg
      781 gaaaaaggaa acgcctgacg atgttgaaga gcgaactgtt tcgtctggcg cgtggaagtt
      841 gccgcggctg ttggttgaac tcgaactcgc gccttcgatg gctgaagcgc ggaggttgat
      901 cgaacagggc ggtgtttatg ttgatggtga gagggcgacg caaacggatc ttgaaatgaa
      961 cgaggagcgg agctttctgc ttcaagtcgg gaagcgacgg tttgtgagag ttaaaggaac
     1021 cacaaattaa cacagatgtc tgcgacgatc gccaccgaag aaatccttgt aatcgaaacg
     1081 cccgagcggg tgccgttgca cttcgcactc gcctcgatcg gcaaccgctt tctcgcgtgc
     1141 gccatcgacc acacgattca ggtgctcgtg ctggtgttca tcgtcatcgc gggactggtc
     1201 atcgcgagct attccagttt cgcaaacctg atcgagagcg cgccgaagtg ggtgctggcg
     1261 attttgatcc tcgtggtgtt tcttatcttc tcgagttact tcgcgttctt cgaatggctc
     1321 tggagcggac aaacaccagg caagcgctgg ctcaaactgc gcgtcatccg cgaagacggc
     1381 cgcccgatca cgttttggga agcgtgcgtg cgcaatctgc tgcgcacgtt cgacatgatg
     1441 cccgcgccgt tttattcgat cggcttaatc agcgtcttcg tcagcggccg cgatcaacgc
     1501 gtcggcgatc tggttgcagg cacggttgtc gtgcgcgaac gcgaagccga agcgccggag
     1561 ttcgcgcagg tgttcgcgag tcccgtgagc gatccggcgc tgcgccgttc gttcaaaccc
     1621 gtcgacttca cggccagtct ccaaagtctg acggaagccg agattcaggt ggtggaaacg
     1681 tttctacgcc gccgctggga tctcgccgat gtgccgcgcc aatggatggc gtggcgcgtc
     1741 gcgttaccga ttctttacaa gctccgcccc acctacgacc tcaacacctt tacctacgaa
     1801 ggctttctcg aagaactact ccaccgctac ctccgcgagc atcgcttcag cacgaattga
     1861 ccgtcatagt gagggtttgt tagcctgcaa ggttttcttt ggcgggagat ttgaaacagg
     1921 ggatataagg atgagtaagg aagttttcat actgggcggc aagcgcacgc cgatgggcga
     1981 gtatgtcggc gtgctgaagg acatttcggc gatcgacctg ggcgcggtgg cggcgcgtgg
     2041 cgctctcgca gcgacgcacg tgaacccgga agagatcgat cacacggtca tcggtaatgc
     2101 actgcaaacc tcaggcgacg cgatctacgg cgcgcgtcac gtcgcactca aagccggtgt
     2161 tccattcgag cgcccggcgt taacagtcaa tcgtctctgc ggcagcggta ttcagtcgat
     2221 cgtttccggc gcgcacatgc tgcaactcgg cgaagcgcag acgtgtctcg tcggcggtat
     2281 ggaatcgatg tcgcaagcgc cgcacgtcat tcgcggcgcg cgttcgggtt tcgcactcgg
     2341 acagggaaag ctcgaagaca gtttgatggt cgcgttgctc gacacttact gcaacacgcc
     2401 catggccgga acagcggaaa acctcgcgcg caagtttgaa gtctcgcgtg aagagcagga
     2461 ccagtatgca ctgcgttcgc aacaggaagc caagcgcgcg ctcgatgcag gtctactcgc
     2521 ggaagagatc gttccggctg aagtgaaggg acgcaaggga actcagatcg tcgagcacga
     2581 cgatcacccg cgtccggaca caacactcga aggtctcgcg aaactcaaac ccgccttcgc
     2641 gaaggatgga tttgtcacgg cgggaaatgc ttccggcatc gtcgacggcg cggctgcttt
     2701 ggtgatcgcg aacgaagagt ttataaagca acgcgacctg acgccgatgg gacggatcgt
     2761 cagttgggcc tacgccggcg ttgaaccgga gatcatgggc attggtcctg ttccggcgac
     2821 gcgcgcggcg ctcgcgaagg cgggtttgtc actcaacgac atcgatctcg tggaagtcaa
     2881 cgaagctttc gccgcgcagt acctggccgt ggagaaagag ctcggattgg atcggtcccg
     2941 taccaacgtc aacggcggcg cgatcgcgct cggtcacccg ctcggcgcca cgggcacgcg
     3001 gctggttttg acgttgcttc acgaactgca ccggcgcaac ggacgctacg gattggcgac
     3061 ggcgtgcatc ggcggcggac agggtatcgc gatgattgtc gagcgcgttt agacggacgg
     3121 ctgtccatct tttccaataa atccaaattc ttggtgggcg tggccccggg acgcccacca
     3181 gttttttagt taagtattgg cacgagtcac cttcgttgga agggattctg tcggcacggg
     3241 ttttgcgaaa tttttcgcgt gataacggac gggtccgcgt tgctattttg tccggctcac
     3301 aattcacgaa gatttaatag cttcaatcat gacttagact tgcggagtgc gagtcaggcg
     3361 tgatagaagc tgcgtcttgc tggaacaacc aatcgtcatt ccttctgaac ttgattcagg
     3421 tgtactcaaa ctcggctaaa catcagcgct gccctcgggg gctgacgcgc attggaacgt
     3481 taactcattg ctaaggagtt ccccagtatg tcgaagatca taaagctttc ttttgcaggc
     3541 ctgctggtgc tcgctctctg cgcgatttct tttgcgcagt cgacgaccac cggtgcgata
     3601 ggcggcgtag ttactaaccc aaataaggag gttgtgcccg gcgcgcaagt gacggtcaag
     3661 aacctcgaaa cgaacaagga agaaacggct accaccgatg acaccggacg tttcaaagtc
     3721 gccaacttgc agccggggag atactccgta acggtcaact cgaccggctt cagcccgatg
     3781 accaatgaga acgtgatcgt cgagatcggc cgcgagacgc cgctcgaagt cgcgctgtcg
     3841 gtcggaccag tcactggttc ggtcgacgtt agcgctgaag cgcccgtcat caacaccacg
     3901 cagcaggact tctcgaccaa catcaaccaa acgtcaatca acgagctccc aatcaacgga
     3961 cgccgttggt ccaacttcgc cctgctcacg ccgggtgcgg tgccggacgg aacgtttggt
     4021 ctgatcagct tccgcggtat ctcgggcctg ctcaacaaca acacgatcga cggcggcgac
     4081 aacaaccagg cgttcttcgc agaagagcgc ggccgcacgc gtatcagcta ctcgatcagc
     4141 caggcagcca tccgcgagtt tcaggtcaac acttcgagct actcagccga gtacggacgt
     4201 tccgccggcg gcgtggtcaa cgccatcacc aagagcggca cgaacgagtt tcacggcggt
     4261 cttttctact accagcgcaa caacaagtgg ggcgcccgca acccgctcgc tacgcgccag
     4321 gaattgatca atggggtctt tacgccggtc ggtttcaagc cgaaagacgt gcgccaccag
     4381 tttggcggta cgatcggcgg cccgatcgct aaagacaaac tgtttttctt cttcagctac
     4441 gaccagcaga agcgaaactt cccgggcctt tcgatcttta gccagggcac cttcctgaac
     4501 ctgtccacca ccgtccgcaa caacatcgtt gcccgcggtg tgacgtccgc tcaggtcgat
     4561 aacgctctga acttcctccg gagccttacg ggtcccgtgc cccgcaccgg agatcagaaa
     4621 ctcttcctgc ccaagattga ctggatcatc aacgacaaga acacgctgac cgtcagctat
     4681 aaccgcttgc gttgggagtc gcccgcgggc attcagacgc aggcgaccaa cacgcgcgcg
     4741 atcgacaact tcggcgacga ctttgtcgag atcgacgcgg tcaacgtgaa gctggcttca
     4801 accatcacgc cgaccctttt gaacgagttt cgtatgcagt ggggccgtga caacgagttt
     4861 cagttcagcc aaccgcccgc tcccggcgag ccgaccaacg ctccgggcgg acgttcgcca
     4921 cagaccttca tccagaatgg tttctcgttt ggtatgcctg agtttctcga gcgcgccaag
     4981 ttcccggatg agcggagatg gcagtttgcc gacacggtca cgatgactca gggaaatcac
     5041 accgtgaagt tcggcggcga catcaacttc gttaaggacg acatcaacaa cctgcgtttc
     5101 ctcggtggtg agttcaacta caccggcgcc aatggcctgc cggatttcat cgtcgactac
     5161 accaactggg tgaccaatgg cggcattcgc tcgttggttc ccaacgccga tggtttgccg
     5221 aacactggcg atgagagtcg cggactctgc gtcggctcaa cgcgccgcgc gggcaagtgc
     5281 tacgccggta acttcaatca gggattcggt gttcttggtc ttacgatgaa gactaccgac
     5341 ttcaacttct tcgttcagga cgactggcgc gtgacaccgc ggttcacttt gaacctcggt
     5401 ttgcgctacg agtaccagct caatcccgat ccggttgcag tgaatccgct gctgccgcag
     5461 acggccaaca aggtcgacga ccggaataac ttcggtccgc gcatcggttt tgcttacgac
     5521 ctgaccggcg acggcaagac cagtatccgc ggtggctggg gtctctacta cggccgcgtg
     5581 atcaactcga ccgtttacaa cacactcgtc aacaccggcg tcggcatcga tcaaggccag
     5641 cgacagttca cgtccagcgc caacaacctg ccgacggctt gtacgcaagc gaacccggcg
     5701 ctcaacgcca acgactgccc gttcttaccg atcttcccga atctcctgcc gtcgtccaac
     5761 ccgccggttg gcgcgattca attcttcgac gatgacttcc agctcccgca gattcatcag
     5821 tgggacttca tcttcgagcg tgagatcgcc agaaacacgg tcgtctcggc ttcgtatctc
     5881 ggcagcttcg gcaactcgtt gccgaacttc gtcgatacca acctgccgca ggcacgccgt
     5941 ctcgtttctt tgaacgttgt gggtggtcca ttcggcggct ccacgtatca gacgccgatt
     6001 ttcgtcggcg ccagaccaga cacgcgcttc gcgcagctca cggaaatccg tagcgacgtt
     6061 cattcgaaat accacgcgct ggtgcttcag gcgaatcgtc gcttgacgaa gggcctgcag
     6121 ttccagacga actacacgtt gtcgcgggct aatgacctcg gtcagagctc ggtcacgttc
     6181 acgaccaaca acctgccgtt caacgctttc gatcagcagg gtgaagacgc gctgtcgaac
     6241 ttcgatcgca gacagaaatt tgtggcgagc gttgtatgga gcccgaatcc gtttgcggat
     6301 ggcgctgcca agcacatctt caacggttgg acgttcgcgc cgatcctgaa tgctttctcg
     6361 ggtcagcgct tcaccggcaa cgtcggcggc agcatcgcga ccacgacgtt cggttttggt
     6421 cagaactgcg gaactgcgaa tgccacggct gattgcaaca cgcccggcgg tggtgtgaat
     6481 ggttccggcg gcgccaacag gtttgcgctg gttccgcgca acttcttcaa gcagccgaac
     6541 atttggtacg ttgacgcgcg gctttcgcga cggttcagca ttactgaaag cgtgaagctg
     6601 gagtttttgg tggaaggctt caacgtattc aaccgcacgc aggtgacggg tgtgaacacc
     6661 acgatttaca acctgtcagg caacaccctg acgttcaaca atccgttcgg aaccacgacc
     6721 ggcgctgaca gcaccttgtt ccgtgagcgg caggtgcagt ttgcggctcg tttcgagttc
     6781 taaatcggaa ccactttcaa tccacagatt acacggactc ttctgtgtaa tctgtggatt
     6841 cttctttcca cgccttccaa ccgcccgcca tcgaaaacac gttcgtgtaa cccatctttt
     6901 gcaacgcatc cgtcgccagc gctgagcgat aaccgccgcc gcaataaaga attaattccg
     6961 tgtctttgtc cgggacggtt ctttcgatgt cgcgttcgat gatgcctttg ccgaggtgaa
     7021 tcgcgccctt cgcgtgcgcg gcttcccatt cgttgtcttc gcgcacatcg atcagcttcg
     7081 cgtccttgtt ttcgcgcagc cgttgttcgg tttcggcgac ggacacttcg cgaacgcgtg
     7141 tctttgcgtc ggcgacgagc tttagaaagc cttcggtatg ttccatgtgt ggtcctcaat
     7201 tagcgtggtt ttggttaggg gcatgcgaat gattataatg cccggtcttt taacacttat
     7261 cactggtcta agaggggatt cctacaaaat tggcagacga acagttcgac gtaacgatta
     7321 ttggcagcgg tcccggaggt tatgtagccg caattcgcgc cggtcagttg ggactgaagg
     7381 ccgcaatcgt tgaaaaggat acccgcttgg gcggcacgtg tacgctgcgc gggtgcattc
     7441 cgacgaagca gatgttgatg tcggcgcacg tgttcgagca gatgcagcac gcggcggatt
     7501 ttggcgtgga ggcgtcgggc attcagctcg cgtttgccaa cgtgcagaag cgcaaagaca
     7561 aggtcgtgct gaagaactcg aagggcatcg agtatctgat gaagaaaaac aaggtgactg
     7621 tgttcaaggg cacgggcaag ctggcgttgc cgggccgcgt tgaagtcacc gatgccgaag
     7681 gcaagaagca gacgttgcaa acgaagaaca tcatcatcgc gacgggttct gtcgtgcggc
     7741 cgattccggg ttttgaaact gacggcaagc aggtcgtgaa tagcgatcat attctcgagt
     7801 tgaaagacgt gccgaagtcg ttgatcgtga tgggttcggg cgcggtcggt gtggagtttg
     7861 cttccgtgta ttcgcgtttt ggcgcggaga cgacgattgt cgagttgttg ccgcggctgg
     7921 tgccgttgga agacgaagaa gtctcgaaag atctcgaacg cagttttcgt aaacgcggca
     7981 tcaagtcggt cgtcgatacg aagctcgaaa agatggaaaa gacgcccacc ggcgtgaagg
     8041 tcagcggcaa gaacggcaag ggcgaggaag tcacgctcga agcggagatg ttgctggtcg
     8101 ccgtcgggcg catgccttac acgcaggggc tcgggctcga aggaacgaag atcaaagtcg
     8161 agaagggttt tattcaggtc gacgagtatc agcagaccgc ggagaagggc gtgtacgcga
     8221 tcggcgatgt ggtgccgact cccctcctgg cccacctcgc gtctaaagaa ggaatcgtcg
     8281 cggtcgagca catggcgggg cgaaaggacg tgcgcccgat caatctgcgc ctcgtgccga
     8341 actgcacgta ctgcgatccg gagatcggct cggtcggact gacggaagcg aaagcgaaag
     8401 aacagggcta cgacgtgaaa gtggggcgtt ttccgttctc tgcttccggt aaggcgcgca
     8461 tcatcggcga agaagaaggg ttcgtgaaga tcgtcagcga gaagaagtac gacgagattc
     8521 tcggggtgca catcattggc ccgcatgcga cggaattgat cgccgaagcg tgtgtcgcga
     8581 tgcaactcga atcgacggct gatgaactgg gccgaaccat gcacgcgcac ccgacgatct
     8641 cggaagcagt gatggaagcc gccgaaggtg ttcacgacct gactgttcat atttaaagag
     8701 cgct
//
LOCUS       DASWTX010000078         2284 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_195738, whole genome shotgun sequence.
ACCESSION   DASWTX010000078 DASWTX010000000
VERSION     DASWTX010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2284)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2284)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2284
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195738"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..903
                     /locus_tag="VGD38_01310"
     CDS             <1..903
                     /locus_tag="VGD38_01310"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEY0726674.1"
                     /translation="LLKNAGAALYKAKKSGGANYQFFTADMHELATRRLALETNLRRA
                     IQNEEFLIHYQPRVSVDSLAITGVEALVRWQHPQFGLVSPSEFIPLAEDTGLIVPIGE
                     WVLRQACEQNRRWQDMGFAPIQMAVNISGRQFHDRDLSQTVVRIVNDSGLSPHHLELE
                     LTESSIMQNEEFAANVLTRWRNMGINISIDDFGTGVSSLASLKRLPIGALKIDQSFVR
                     DANTDPDDAAIVMAIITLAHNLRLRVVAEGVETEEQLRFLQLLRCDEIQGYFFSKPLP
                     AEKLVSLFDSAATTKGATKSLIKS"
     gene            complement(900..>2284)
                     /locus_tag="VGD38_01315"
     CDS             complement(900..>2284)
                     /locus_tag="VGD38_01315"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEY0726675.1"
                     /translation="QVIQQLDQYSTLQSFQLFHHVIIPDGSSYPFEIKQYGAPTGEGS
                     DQGKDVAIVKIEVKNAPILKIGDSDKVQLQDHVTVIGYPGAADTFNSGLLSSRSALEA
                     TMNDGKISARKTATSGAPILQTSAPATHGNSGGPVLNDANEVVGLLTFRGDTVNGQEV
                     SGFAFIVPSNTVMEYVKSAGASNEPGMTDKSYHEGLDLYWNQYYSSAIPKFEEVKRLF
                     PHHSEVDRLIQSSQQAKAEGKERSSFPLWIVGVILGVLFILLLVILIIAVVVIMMRRK
                     KKKTSTPGAAGADKRHPAPSPSPAPSPAAAHSANPTPAPPKPAPAPPPPPAPMPMAMG
                     GDQGMTVDLSRTVAITADMDGFAKNYGMIQFVSGPLSGQKFQIRADGDYIGRDGGSSQ
                     IVIGDPRISKRHLWIGVKDGRVVIEDQNSRNGTFVNDPKSARVTEAPLNTGDTVILGE
                     SDVARFEFHA"
BASE COUNT          443 a          665 c          667 g          509 t
ORIGIN      
        1 cttctgaaaa acgccggcgc cgcgctatac aaagccaaga aatccggcgg cgcaaactac
       61 cagttcttca ccgccgacat gcacgagctc gcgacgcgcc ggctcgcact cgaaaccaat
      121 ctccgccgtg cgattcagaa cgaagagttt ttgattcact accagccgcg tgtctcggtc
      181 gactcgttag cgatcacggg tgtcgaggcg ctcgtgcgtt ggcagcatcc gcagtttggt
      241 ctcgtctcgc cgtcggagtt tattccgctc gctgaagaca cgggtctgat cgtgccgatc
      301 ggcgaatggg tgctgcggca ggcgtgcgaa caaaaccggc gctggcagga catggggttt
      361 gctccgattc agatggccgt caacatctcg ggccgccagt ttcacgatcg cgatctgtca
      421 caaactgtcg ttcggatagt caacgactcg ggactgtcgc cgcatcatct cgagttggaa
      481 ttgacggaaa gttccatcat gcagaatgag gagtttgccg caaacgtgct gacgcgctgg
      541 agaaacatgg gcatcaacat ctccatcgac gacttcggca ccggcgtctc ttcgctggcg
      601 tcgctgaagc gtttgcccat cggcgcgttg aagatcgacc agtcgtttgt gcgcgacgcg
      661 aacaccgatc ccgacgacgc ggcgatcgtc atggccatca tcacacttgc tcacaacctg
      721 cgtctgcgag ttgtcgcgga gggcgtggag acagaggaac agttacgttt tctgcagttg
      781 ctgcggtgcg acgagataca ggggtacttt ttcagtaaac ccctgcccgc cgaaaaactc
      841 gtttcgctat tcgactccgc cgccaccacc aaaggcgcga cgaaaagtct cataaaaagc
      901 taagcgtgga actcgaaacg cgcgacgtct gattcgccga gaatcaccgt gtcgcccgtg
      961 ttcagtggcg cttcagtgac acgcgctgac ttcggatcgt tcacaaacgt gccgttgcgt
     1021 gaattctgat cttcaatcac cacgcggccg tccttcacgc caatccacaa atgccgcttc
     1081 gagatacgcg ggtcgccgat cacgatctgt gacgaaccgc cgtcgcgtcc gatgtagtcg
     1141 ccgtccgctc tgatctggaa cttttgtcct gacagcggac cggaaacaaa ctgaatcatt
     1201 ccgtagttct ttgcgaagcc atccatgtcg gccgtgatcg ccacggtgcg cgaaaggtcg
     1261 acggtcatgc cctgatcgcc tcccattgcc atcggcatcg gggctggcgg cggcggaggc
     1321 gccggtgcag gtttcggcgg agccggtgtc ggattcgcgg agtgtgcggc agcgggagac
     1381 ggcgccggcg atgggctcgg cgcaggatgt cgtttgtccg ctcctgccgc gcccggcgtg
     1441 ctcgtctttt tcttcttccg gcgcatcatg atcacgacta cggcgatgat caggatgacc
     1501 agcaacagta tgaacaacac accgagaatc acgccgacga tccacagcgg aaaactcgat
     1561 cgttccttgc cttcagcctt cgcctgttgg ctgctttgaa tcaggcgatc gacttccgag
     1621 tggtgtggga agagacgctt tacttcttca aacttcggaa tcgccgacga gtagtactgg
     1681 ttccagtaga ggtcgagtcc ttcgtgatac gacttgtctg tcattcccgg ttcgttggag
     1741 gcgccggcgc tcttcacgta ctccatcacc gtgtttgacg gcacgatgaa agcgaacccg
     1801 gagacttcct gaccgttgac agtgtcgcca cggaaggtga gaagaccgac gacttcatta
     1861 gcgtcgttca gcactggtcc accggaattg ccgtgcgtcg cgggagcgct cgtctgcaag
     1921 atgggcgctc cactcgtggc cgtttttctc gccgagatct tgccgtcgtt catcgtggct
     1981 tcgagcgctg aacggctgct gagcagaccg gagttgaagg tatctgccgc gcccggataa
     2041 ccgatcacgg tgacgtgatc ctgaagttga actttgtctg agtcgccgat tttgagaatc
     2101 ggagcgttct tcacttcgat cttcacgatc gcgacgtctt tgccctgatc gctgccctcg
     2161 ccggtcggtg cgccgtactg cttgatctcg aatggatacg agctgccgtc ggggatgatg
     2221 acgtggtgga acagttggaa actctgcagc gtgctgtatt gatcgagctg ttggatgact
     2281 tgct
//
LOCUS       DASWTX010000079         1603 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_412480, whole genome shotgun sequence.
ACCESSION   DASWTX010000079 DASWTX010000000
VERSION     DASWTX010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1603
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_412480"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            73..840
                     /locus_tag="VGD38_01320"
     CDS             73..840
                     /locus_tag="VGD38_01320"
                     /inference="COORDINATES: protein motif:HMM:NF018484.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chlorite dismutase family protein"
                     /protein_id="HEY0726676.1"
                     /translation="MSSDKDPINARGSLRLAPASSELEIEKAKLPRQFVNVTFYKARP
                     EWRLLSDAEKQRCREEFIKIVDEFRSSLLIHSYSTVGLRTNVDFMIWRIGYELEPIQE
                     MTARLNKTEMAKYIEATQSFLSMTKRSMYIDKDNPQHVEDRLHIVPGKSQYLFVYPFV
                     KTREWYSRPAEQRQEMMDEHIRIGMKYRSVKLHTTYSFGLDDQEFVVAFETDYPADFL
                     DLVQELRETKASSYTLRDTPMFTCRQRALGECLEALG"
     gene            938..>1603
                     /locus_tag="VGD38_01325"
     CDS             938..>1603
                     /locus_tag="VGD38_01325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726677.1"
                     /translation="MRGFSTGKLGAPLLNPSQLNLPRDKAAGWGINGPGVSAEWTQGG
                     ESEWNSAAASADETRAEIYQDFEVPRAGQYTLWVRYADWANKAENFTVRIAQGDVIMS
                     RSEFGGKDVVDPHDEVSMYWGWAFTWDSAPVTLRKGHARLLIQIEKAAAARRHVDCFL
                     LTNDAGFRPSGRAKPDFAAARYLRAWSVHRKPLSSLLASNDRAQVPGRWIVPQVAGRN
                     FLMP"
BASE COUNT          358 a          438 c          458 g          349 t
ORIGIN      
        1 taacttccgc atcacgaaat cattccaggt caggcaagtc aaaatcttta ttcaggaacc
       61 agaggtaaat caatgagtag cgataaggac ccaatcaatg cccgcggctc ccttcgtctc
      121 gcacccgctt cctcggaact cgaaatagag aaggccaaac ttccccgaca gtttgttaac
      181 gtcacttttt acaaagcacg ccccgaatgg cggctcctct ccgacgctga aaagcagcgt
      241 tgccgcgagg agttcatcaa aattgtcgat gagtttcgct cgtccttgct gattcattcg
      301 tattcgaccg tcggtctgcg caccaacgtc gacttcatga tctggcgtat tggttacgag
      361 ctcgagccga ttcaggaaat gaccgcgcgt ttgaacaaga ccgagatggc gaagtacatc
      421 gaagcgacgc aatcgttcct ctcgatgacg aagcgctcga tgtatatcga caaagacaat
      481 cctcagcacg tcgaagatcg cctgcacatc gttcccggca aatcgcagta cctgttcgtt
      541 tatccgtttg taaaaacgcg tgagtggtac tcgcgtcccg ccgagcagcg gcaggagatg
      601 atggacgagc acattcgcat cggtatgaag taccgttcgg tgaaactgca cacgacctac
      661 tcgttcggtc tcgacgatca ggagtttgtc gtcgctttcg aaacggatta tccggctgac
      721 ttcctcgatc tcgttcagga gttaagagaa accaaggcca gctcctacac gctgcgcgat
      781 acgccgatgt ttacctgccg tcaacgtgcg ctgggtgagt gtcttgaggc gctcggatag
      841 tccgtgtcta acagcggtct ggcttctcct cgcggccata actctccacg cgcagaccaa
      901 acctgcgcct gagtacctct ggtacgaagc ggaaaacatg cgcggctttt cgaccggcaa
      961 gctcggggcg ccgctgctta acccttccca gttaaatctt ccacgcgaca aagcagcagg
     1021 ctggggcatc aatggaccgg gcgtctccgc tgagtggacg cagggcggcg agagtgagtg
     1081 gaactctgcc gcggcgagtg ctgacgaaac gcgtgctgag atctaccagg actttgaagt
     1141 gccgcgcgcg gggcaatata cgctctgggt ccgttacgcc gattgggcca acaaggctga
     1201 gaacttcacc gtcaggatcg cgcagggaga cgtgatcatg tctcgcagcg agtttggcgg
     1261 gaaggacgtt gtcgatccgc atgatgaagt aagcatgtac tggggctggg cgtttacgtg
     1321 ggacagcgcg ccggtgacgt tgcggaaagg ccacgcgcgg ttgttgattc agatcgaaaa
     1381 agctgccgca gcgcgaagac atgtcgactg tttcctgcta acgaatgatg ctggttttag
     1441 gccaagcggc cgcgcgaaac ctgactttgc tgccgcgcgc tacttacgtg cgtggtccgt
     1501 acatcggaag ccgttgagtt cgctgctagc gagtaacgac cgggcacagg ttccagggag
     1561 gtggattgtt ccgcaagttg cagggcgaaa ttttttgatg ccc
//
LOCUS       DASWTX010000080         7092 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_174112, whole genome shotgun sequence.
ACCESSION   DASWTX010000080 DASWTX010000000
VERSION     DASWTX010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7092
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174112"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..4460)
                     /locus_tag="VGD38_01330"
     CDS             complement(<1..4460)
                     /locus_tag="VGD38_01330"
                     /inference="COORDINATES: protein motif:HMM:NF037144.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HEY0726678.1"
                     /translation="MRSLVTSLALICILVVNGVATQARKTNLKRTNSTTERKAPQSSA
                     SKKQTARAKRESAKQKAAQRELIKRNPRLASLFAGETEEEILRYDKPRESVEWYLQKR
                     LPKGEKQLPVERYYAAKEKIKKMKRFSTRGNKNLPPAQESEELLEDGFEDPEFPGGTG
                     GGGAGDGSASTSGVLGTWQSIGPGNVGGRTRALVIDPVDPNVIYAAGVAGGIWKTTNG
                     GSSWAPLNDFLANIAVTVLAMDPTDHNTLYAGTGEGFFNADGVRGAGIFKTNDGGAHW
                     TRLASTASNNNFFFVNDIVVSNANSQHVYAATRTGVWRSLDGGTSWTQVIVSNAANGA
                     NGAMDLVMRTDQATDYIFAAVGTFSRSHIFRNVDAGGAGTWEDVYSEVNMGRTALAIA
                     PSNQNVIYALAACIACGPGTNPNFPTANYTDGLLGVFRSTSSGDTGSWTTQTRNNSAN
                     LQDTLLLSNPVNGALTQCGLGTSQFLNQGWYDNVIAVDPTDENTVWAGGVDLFRSTNG
                     GGNWGVASYWWFQGNGTPPNNGDPQLVHADNHILVFHPNYNGSTNQTLLIGNDGGIYK
                     TENAKTGNVGYPGGATPGGGAITPSSPICGAAFAPGAPFTVPSPVIWGPLNNGYAVTQ
                     FYHGLPYPNGQTYFGGTQDNGTNRGTDAAGPNAWARINGGDGGYVAVNPANTNTIFFE
                     TTGLSLRRSTNGGASSASVISGIAGDVFPFITVFRMDPNTPTRLWIGGRFMWRTDNNA
                     TNWTRTSNAQQTGGSITAMAIAPGNSNVVINGAASGQLRRTTIGLTANAASVLNTVWL
                     QSFTPRGNGNGTISWVEYDPSNANNVWATISTFNGTPNANGTSAGHVFRSTDGGATWT
                     LADGTQTPGNVNAIPDIPAHSVVVDPNDGQRIYVGTDLGVFVSLDGGANWARETTGFS
                     NTVVESMTAVNNNGVTTLFAFTHGRGAFKVTIPASCATVSPTTQAFFSPGNTGNVTVT
                     KNLAATAACDWNAMSNSDFITINSGASGSNNGTVNFTVAPNTTGAARVGTLTVAGRNI
                     TITQDAAPTANTDSATTDEDTPVNINVLANDVEPDGDTLNVTSVTQGTNGTVSVNANK
                     TVRYAPALNFFGSDSFTYTIDDGHGGTSTATVNVTVNAVNDAPVFTINLLSQTVQYSD
                     PITPVTVSVSDVDDPTSSLTLSVLSALPAGITATPTGVGSLTISGNPLVIAGIYNIDL
                     RVTDPHNAVTNATVTINVNKETAETTYTGDMGVITAGPSITTATVRLGAHLTQDADGA
                     PGDITLARVRFEIFKSSNMTNTPDLVVGNVPVDSNGDALVLQPGMAADTYVVKVKIEA
                     ANGYWTADPVGLGTINVAVGTNDQRAAGGGWVPYDGSVNGKANFGFTVRVDKNSVKGS
                     SIFIIRGTDGFNYIVKSTSWAGGFLNFANEPGTSTPNRASFGGKATVQKVDPATGAVV
                     ASFGNYSFTVDTRDGDLLAPAQRDAYAITVLDNNGVIWRRVGTNTSLIPLG"
     gene            4634..5068
                     /locus_tag="VGD38_01335"
     CDS             4634..5068
                     /locus_tag="VGD38_01335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726679.1"
                     /translation="MLTAASWQTIDFNGLFTFRLPGGFEKREGTKPDDLRVEYRKGQT
                     TLVVVWGHTESVAYEQRRKDWMHDYRESVTRIRGRRANIRRYSQGTGSKRAYRAELNV
                     GNWEKGEVQLYMRMETDDPAMLEVAEQIFNSVSIPLPPPERP"
     gene            5186..6505
                     /locus_tag="VGD38_01340"
     CDS             5186..6505
                     /locus_tag="VGD38_01340"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HEY0726680.1"
                     /translation="MTSLSPLALAQKKTAPVEATPPPVREEFKFGEVDLEVLEQADLL
                     DRRLERDGLVLADPSATAYLQRIGLSLVPRDLQLEKVTWKFRAVRDPQPNAFALPNGS
                     IYVTTGLMALVDNESQLAAILAHELTHVMRRHTYVHNRSNRKKFLTMNVMAAIGAYAP
                     GGIVGAVIMVVTTVAPFIMIATIYGYSRDLEREADLKGVDMMISAEYAPEEMVNVMKL
                     LKKDFEGENIRLFYNDHPSLEERIKYLSSYLGARADRVTHQMELNRERAAYFRTVEPV
                     MRHDLKLAINAGRARSAVYHAQRLVDFHADSENFFWLAESYRTLGPRAPQLTEKEMTN
                     SAKKDAAKNRLKRTAEEEERDLLATPAGKENWEKNQQLAEQFYQKALSAENPVPVAHR
                     GLGMLYEKLGRGTEAAAEYEKYLEQSPTATDRERIQRRIQTLKEKQQ"
     gene            6502..>7092
                     /locus_tag="VGD38_01345"
     CDS             6502..>7092
                     /locus_tag="VGD38_01345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726681.1"
                     /translation="MSARSIVKMQTFMFAIVVLLAASHHAEAQFIHPKIKSKEVTIRR
                     VVVLPAKVNVVRDSMKGPEGMAAESEQLSGRVEAMIAEVLAKKKNVTTLTVKAEPAEG
                     EGDSQQKYNIADFQAKFDDLLPKIMKKRSDVKKGRFSMGDEVLNLNLDKETDAVVFIR
                     GSGQKLTSGKTAFRLLVGGVPAYLGLQIGIVDARNGE"
BASE COUNT         1389 a         1968 c         2222 g         1513 t
ORIGIN      
        1 cccaaaggaa tgagcgacgt gttcgtgccg acgcggcgcc agatgacgcc gttgttgtcg
       61 aggaccgtga tcgcgtaggc gtcgcgttgt gccggcgcga gcagatcgcc gtcgcgcgtg
      121 tcgacggtga agctgtagtt accgaacgac gctacgaccg cgcccgttgc cggatcgacc
      181 ttctgcaccg tggccttacc gccgaacgac gcgcggttcg gtgtgctcgt gccgggctcg
      241 ttggcgaagt tcaggaagcc gccggcccaa ctcgtgctct tcacgatgta gttgaatcca
      301 tccgtgccgc ggatgatgaa gatcgagctg cctttcacgc tgttcttatc gacgcgaacg
      361 gtgaacccga aattcgcctt gccgttgaca ctgccgtcgt acggcaccca accaccaccg
      421 gccgcacgct gatcgttcgt gcccaccgcg acgttgatcg tgccgagacc caccggatcg
      481 gcggtccaat aaccgttcgc cgcttcgatc ttgaccttca cgacgtaggt atccgccgcc
      541 attccgggct gtaacacgag cgcatcgccg ttgctgtcga cgggaacgtt gccgacgacc
      601 agatccggcg tgttggtcat gttgctcgac ttgaagatct caaacctcac tcgcgcaagc
      661 gtgatgtctc ccggtgctcc gtcagcgtcc tgcgtcaggt gtgcgccgag acgaacggtt
      721 gcggttgtga tgcttggacc agcagtgatg acacccatat cgccggtgta cgtggtttct
      781 gctgtctcct tgttgacgtt aatcgtgacg gtcgcattcg tcacagcgtt gtgcggatct
      841 gtaactctca gatcgatgtt gtaaatcccg gcgatgacga gcggattgcc cgagatcgtc
      901 agggaaccaa cacccgtcgg cgttgcggta attccggcag gcaacgcgga caacaccgac
      961 aacgtcagcg acgaagtcgg atcgtcaacg tcggaaaccg aaaccgtcac cggcgtgatc
     1021 ggatcgctgt actgcactgt ctgcgacagc agattgatcg tgaacaccgg cgcgtcgttc
     1081 accgcgttga ccgtgacgtt gacggtggct gtagatgtgc cgccgtgtcc gtcgtcgatc
     1141 gtgtaggtga aggagtcgct gccgaagaag ttcagcgcgg gcgcgtaacg aaccgtcttg
     1201 tttgcgttaa ccgagacagt tccattcgtt ccctgtgtga ctgacgtgac gttgagtgtg
     1261 tcgccgtcgg gctcgacgtc gtttgccagc acgttaatat tgactggcgt gtcttcgtcg
     1321 gtggttgcgg agtcggtgtt tgcagtcggc gccgcatcct gcgtgatcgt gatgttgcgg
     1381 ccggcgacgg tcagtgtgcc gacacgcgcc gcgcccgtgg tgttcggagc gaccgtgaag
     1441 ttgactgtgc cgttgttcga gccactcgca ccggagttga tcgtgatgaa gtcactgttg
     1501 ctcatcgcgt tccagtcgca cgcagcggtg gcggccaggt tcttcgtgac cgtcacgttg
     1561 ccggtattgc cgggcgagaa gaaggcttgc gttgttggcg agactgtcgc gcacgacgcc
     1621 ggaatcgtga ccttgaaagc accgcggccg tgcgtgaatg caaacagggt cgtgacgccg
     1681 ttgttgttca ccgccgtcat cgactcgacg acggtattcg agaagcccgt ggtttcacgc
     1741 gcccagttcg cgccaccgtc gagcgagaca aacacgccga ggtcggtgcc gacgtagatg
     1801 cgttgaccgt cgttcggatc gacgacgacg ctgtgcgccg gaatgtcggg aatcgcattg
     1861 acgttaccgg gcgtttgcgt gccgtcggcg agcgtccatg tcgcgccgcc gtccgtgctc
     1921 ctgaaaacgt gaccggcgct cgtgccgttt gcgttcggcg tgccgttgaa ggttgaaatg
     1981 gtggcccaga cgttgttggc gttggacgga tcatactcaa cccacgagat cgtgccgttg
     2041 ccgttaccgc gcggcgtgaa cgattgcagc cagacggtat tcaaaacact cgccgcgttc
     2101 gctgttaagc caatcgtggt gcggcggagc tgacctgaag ccgcgccgtt gatgacgacg
     2161 ttggagttgc ccggcgcaat cgccatcgcc gtgatcgagc cgcccgtttg ttgcgcgttg
     2221 cttgtcctgg tccagttggt tgcgttgttg tcagtgcgcc acatgaagcg gccgccgatc
     2281 cacaaccgtg tcggcgtgtt tggatccatc ctgaacacgg tgatgaacgg gaacacgtcg
     2341 ccggcaatgc ccgaaatgac cgacgccgag ctcgcgccgc cgtttgtcga acggcgcagc
     2401 gaaagccccg tcgtttcgaa gaagatggtg ttggtgttcg ccggattgac ggccacgtag
     2461 ccgccgtcgc cgccgttgat gcgtgcccac gcgtttggac cagccgcatc ggtgccgcgg
     2521 ttcgtgccgt tgtcctgtgt accgccgaag taggtttgtc cgtttggata aggcaggccg
     2581 tgatagaact gcgtcactgc gtagccatta tttaaaggac cccagatgac aggcgaggga
     2641 actgtaaacg gcgcgcccgg tgcgaatgcg gcgccgcaga tcgggctgct cggggtgatc
     2701 gcgccgccgc ccggcgtggc gccgccggga tagccaacgt tgcccgtctt cgcgttttca
     2761 gttttgtaaa tgccgccgtc gttgccgatg agcagcgtct ggttggttga gccgttgtag
     2821 tttggatgga agacgagaat gtgattgtcg gcgtgaacga gttgcgggtc gccgttattg
     2881 ggcggggtcc catttccctg gaaccaccag tacgacgcga cgccccagtt gccgccgccg
     2941 ttggttgagc ggaagagatc gacaccgccg gcccaaaccg tgttttcgtc agtcggatcg
     3001 actgcgatga cgttgtcgta ccaaccctga ttcaaaaact gactggtgcc gagaccgcat
     3061 tgcgtcaacg caccgtttac cgggttgctg agcaacagcg tgtcttgcag gttcgcgctg
     3121 ttgttgcgcg tctgcgtggt ccacgagccg gtgtcgcccg atgacgtcga acggaaaacg
     3181 ccgagcagac catcggtgta gtttgctgtc gggaagttag ggttcgtgcc ggggccgcag
     3241 gcgatgcaag cagccagcgc gtagatcacg ttctggttcg acggcgcgat cgccagcgcc
     3301 gtacggccca tgtttacttc cgagtaaacg tcttcccacg tgccagcgcc gcccgcatcg
     3361 acgttgcgga agatgtgcga ccgcgagaac gtgccgactg cggcgaagat gtagtcagtc
     3421 gcttgatcgg tgcgcatcac gaggtccatc gcgccgtttg cgccgttggc cgcattcgag
     3481 acgatgacct gcgtccagct tgtgccgccg tcgagactgc gccacacgcc ggttcgcgtt
     3541 gcggcgtaga cgtgttggct gttggcattg ctgacgacga tgtcgttaac gaagaagaag
     3601 ttgttgttcg aggcggttga ggcgagacgt gtccagtgtg cgccgccgtc gttggtcttg
     3661 aagatgccgg cgccgcgaac accgtcggcg ttgaagaagc cttcgccagt gccggcgtag
     3721 agcgtgttgt ggtctgtcgg atccatcgcc aggacagtca cggcaatgtt tgcgagaaag
     3781 tcgttcaatg gcgcccacga actgccgccg ttggtggtct tccaaatacc acccgcgacg
     3841 cccgctgcgt agatcacgtt gggatcgacc ggatcgataa cgagcgcgcg cgtacggccg
     3901 ccgacgttgc cgggtccgat tgattgccac gtgccgagca caccgctggt cgaggcgctg
     3961 ccatcacccg cgccgccgcc gccggtgccg cccgggaatt ccggatcttc aaagccatct
     4021 tcgagaagct cttcactctc ttgcgcgggc ggcaggttct tgttgccgcg cgtcgagaag
     4081 cgcttcatct ttttgatctt ttcttttgcg gcgtagtagc gttcgactgg taactgcttc
     4141 tcgccttttg gcaggcgctt ttgcaaatac cattcgactg actctcgcgg tttatcgtag
     4201 cgaagtatct cctcctcggt ttcgccggcg aacagcgagg cgaggcgtgg attacgtttg
     4261 atgagttcgc gttgtgctgc tttctgtttg gctgactcgc gtttggcgcg ggccgtttgt
     4321 tttttcgacg ccgaagactg cggcgcttta cgttcggtag ttgagttggt gcgtttgaga
     4381 ttagtcttgc gtgcttgcgt agcgacgccg ttcacgacaa gaatgcagat cagagctaaa
     4441 gatgtaacga gggagcgcat tggtaggtac gattcctttc ggtgaaacgg acaatggtag
     4501 tagctcgaaa gctgggacgt ggttgtagta atgcaattgc tgttgtaccg gctagactga
     4561 ttggggcgcg gattataagt gagtcttcgc ttgggaacaa ggaacgagcg tgagaaccgt
     4621 cggtttattt ttaatgctta ctgcggcgag ctggcagacg attgatttca acggcctctt
     4681 tacctttcgt ctgcccggcg gattcgagaa aagagaagga accaagccgg acgatctgcg
     4741 tgttgaatac cgcaaaggcc aaaccactct ggtcgtcgtt tggggacaca ccgagtcagt
     4801 cgcatacgag cagcgccgca aagactggat gcacgactat cgtgagtcgg tgacgagaat
     4861 tcgcggacgg cgtgcaaata ttcgccggta ctcacaaggc acgggttcga agcgcgcgta
     4921 tcgtgctgaa ctgaatgtcg gtaattggga aaagggcgaa gtgcagctct acatgcggat
     4981 ggagacggac gatccggcaa tgctcgaggt cgcggaacag atcttcaatt cggtaagtat
     5041 tcctcttccg ccacccgaac ggccttaggt gatttaacat ttacatctgg acaggcatct
     5101 tgtaactttt agggcaactt ttgaggctat gttcccccgc aagcccacaa atctgatagc
     5161 tgcagcgctt tgctactgca tcctcttgac ctcgcttagt cctctcgcgc tcgcgcaaaa
     5221 gaagactgcg ccggtcgaag ctacacctcc gcccgtcagg gaagaattca agtttggcga
     5281 agtcgatctg gaggtgcttg aacaggcgga tctgctcgac cgccgtctcg agcgcgatgg
     5341 cctcgtgctc gccgacccgt cggcgaccgc ttatttgcag cgcatcgggc tgtcgctggt
     5401 tccccgtgat ctccaactcg aaaaagtgac gtggaaattc cgcgcggtcc gcgacccgca
     5461 gccgaacgcc ttcgcgctgc cgaacggctc gatctacgtc accaccgggt tgatggccct
     5521 ggtcgataac gaatcgcagc tcgcggcgat actcgcacac gagctgacgc acgtgatgcg
     5581 gcggcatacg tacgtgcaca atcgcagcaa ccgcaaaaaa tttctcacga tgaacgtcat
     5641 ggccgcgatc ggcgcgtatg cgcccggagg gatcgtgggg gccgtcatca tggttgtcac
     5701 gacagtagct ccgttcatca tgatcgcgac gatctatgga tacagccgcg acctcgaacg
     5761 cgaggctgat ctcaaaggcg tcgacatgat gatcagcgct gaatacgcgc cggaagagat
     5821 ggtcaacgtg atgaagctgc tgaagaagga cttcgaaggc gagaatatca ggctgtttta
     5881 taacgaccat ccatcgctcg aagaacgaat caagtatctg agcagttatc tcggagcgcg
     5941 cgccgaccgg gtcacgcatc agatggagtt gaatcgagaa cgggcggcgt attttcgcac
     6001 cgtggaaccg gtgatgcgcc acgatctcaa attggcgatc aatgcgggac gcgctcgttc
     6061 agccgtttac cacgcgcagc gtctcgtgga ttttcacgcc gactcggaaa acttcttttg
     6121 gttagcggaa agttatcgca cgctcggacc gcgtgcgccg cagctaaccg aaaaagaaat
     6181 gacgaacagt gcgaagaagg atgccgcgaa gaatcgtttg aaacgcacgg ctgaagaaga
     6241 ggagcgcgac ctgcttgcga cgccggcggg taaggaaaac tgggaaaaga atcaacaact
     6301 ggctgagcag ttctaccaaa aggctttgag cgctgagaat ccggtgccgg tcgcgcaccg
     6361 cgggcttggc atgctttacg agaaactcgg acgaggaacc gaggccgccg cggaatatga
     6421 gaagtacctc gagcagtcgc ccacggcgac cgatcgcgaa cgaattcaga gacgcattca
     6481 aacgttgaag gagaagcagc aatgagtgct cggtctatcg tgaagatgca aacgtttatg
     6541 tttgcgattg tggtactgct cgccgcttcg catcacgccg aggcgcagtt tattcatccg
     6601 aagatcaagt cgaaagaagt cacgattcgg cgcgtcgttg tgttgcctgc gaaggtgaat
     6661 gtcgtccgcg acagcatgaa aggcccggaa ggcatggctg cggagtccga gcaattgagc
     6721 gggcgcgtag aagcgatgat cgctgaagtc ctggcgaaaa agaagaacgt cacgactctg
     6781 acggttaaag cggagcccgc cgagggcgag ggcgactcgc agcagaagta caacatcgcc
     6841 gactttcaag ccaagttcga cgacctgttg cccaagatca tgaagaagcg cagcgacgtt
     6901 aagaagggcc gcttctcgat gggcgacgag gtactgaacc tgaatctgga caaggaaaca
     6961 gacgccgtcg tcttcatccg tggctcgggc cagaaactga cgagcggcaa aactgcattc
     7021 agactgctgg ttggcggagt tccggcttat ctgggattac agatcggcat cgtggacgcg
     7081 cgaaacggcg aa
//
LOCUS       DASWTX010000081         4898 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_195755, whole genome shotgun sequence.
ACCESSION   DASWTX010000081 DASWTX010000000
VERSION     DASWTX010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4898)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4898)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4898
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195755"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..881)
                     /locus_tag="VGD38_01350"
     CDS             complement(<1..881)
                     /locus_tag="VGD38_01350"
                     /inference="COORDINATES: protein motif:HMM:NF025690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4388 domain-containing protein"
                     /protein_id="HEY0726682.1"
                     /translation="MSLTDLLQFLAAGRKSGTLKFDRDKITKQVYFKNGMIVGSKSND
                     PREYLGQVLLHYGKVDDNQLKAAREVQRTSGAKLGEVLVQQGYLTEAEVLEILKTRTL
                     DAIYDLFMWEEGDFEFYDEDPLPEELLLIEVEPTNVIMEGIYRIDELARYRTLVPSDR
                     SILELNAGWTSSLKLGKEFRQVLFFVDKKMSVAEICYHMHASAFHVYGQLYTLISEGV
                     ARVIGEKPEETPPPGNDIEDLPESVTEMVWSAERKLENDPEAALQIVQAALQQQPNNP
                     EAQALLPAAEEAYVKHV"
     gene            complement(947..1300)
                     /locus_tag="VGD38_01355"
     CDS             complement(947..1300)
                     /locus_tag="VGD38_01355"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HEY0726683.1"
                     /translation="MDDRRSRPRLSVHLDAVWQDAEERHSARVTDLSEGGCYLDTVGE
                     VMVGEIVAFRVLLPDGEWLYLEGEVRHHSHGLGFGVQFVELNEEQTENLQRLLAIARE
                     GGPDAAVISADLVED"
     gene            complement(1360..2307)
                     /locus_tag="VGD38_01360"
     CDS             complement(1360..2307)
                     /locus_tag="VGD38_01360"
                     /inference="COORDINATES: protein motif:HMM:TIGR00147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEY0726684.1"
                     /translation="MALPLVIINPSSASGSTGEAWPRVASDLRSEFGAFQTAFTKVRG
                     DAAMIAADAARKGIKLIIACGGDGTVSEVANGILASGKDAELGILPSGTGGDFRRSLE
                     IPTGSRAAAQVLRTGRTRRIDVGRISFVDHDGGEAMRYFVGVTSCGLSTKVIQRVKAG
                     GPDWLPANTPRWLGGRVSFGASLLQTAMRTEATRLLVQLDDAHERHLLVATLCIANAR
                     YFGGGMKIAPDAKLTDGKFDVVGVGDLGAMKIFTSAPRVYLGSHLSMPEVSHALARKV
                     TVRPAERGATVDLEVDGELPGRLPATFQIIPEALRVRCK"
     gene            complement(2282..3184)
                     /locus_tag="VGD38_01365"
     CDS             complement(2282..3184)
                     /locus_tag="VGD38_01365"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEY0726685.1"
                     /translation="MRTVESPLNRSQELAPVSTDSTVVPTAEELAALSSFERFAYRVT
                     RRMNQGAWKRFWTWCQSTMGAGWIHLSTYNIMNVYGLEHVEAASRERPLLLVANHRSF
                     FDMYAVSAMLFRMTKWRKQLFFPVRGRFFYQSPLGLVVNLIMGWWSMYPPFFATGDHP
                     LPEKRAFDKFSFRLLTDLARNGPGNIIGFHPEGTRNKNDDPYSFLRAQPGVGKLILEA
                     KPQVIPVFIAGLCNSLPRQVARNWNREEVIRIHFGPLIDLSGYVNRPDRLRTHKEIAD
                     MVMGQIAELAEEDRRMRGAAAGNN"
     gene            complement(3200..>4898)
                     /locus_tag="VGD38_01370"
     CDS             complement(3200..>4898)
                     /locus_tag="VGD38_01370"
                     /inference="COORDINATES: protein motif:HMM:NF014961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008705 - methionine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="vitamin B12 dependent-methionine synthase
                     activation domain-containing protein"
                     /protein_id="HEY0726686.1"
                     /translation="KAKAAKKASKGETVEERLKNHIIDGEKIGLEDELKVALETHPAL
                     DIINNILLEGMKVVGDLFGSGQMQLPFVLQSAEAMKAAVRFLEPFMEKKGGATAKGTM
                     VLATVKGDVHDIGKNLVDIILTNNGYKVHNLGIKQTIEAILQAYDETGADAIGMSGLL
                     VKSTLIMKDNLELMNERGVKVPVILGGAALTRRYVEEDLKSIYKGTLFYAHDAFAGLR
                     TMDQLVGAADDTEENGSGSQAQVAADQEDDVEDLVGEEAKLGIRKAARPRGAEPGGPR
                     GAQPRGAEPRGDTAHTIRSAVTPDAPIPTPPFLGSRVVDDISLDNVFAFVNENALFKG
                     QWQFKQGKTPPEQYQELVRDKVRPVYEELKERSKREQLLVPKVVYGYFNCQSAGNDLI
                     VYNEHQREQVRFTFPRQPAGKHLCLADFFASQDSGRMDVVAFHLVTVGRRASEYSHEL
                     FKSDNYADYLYFHGLSVEAAEALAEFWHKRIREELGIAAQDAPNLSRLFHQQYQGSRY
                     SFGYPACPRLEDQEKLFTLLDPARIDVSLTEEFQLEPEQSTSAIIVHHPEAKYFSIE"
BASE COUNT          980 a         1485 c         1385 g         1048 t
ORIGIN      
        1 tagacgtgct tgacgtacgc ctcctccgct gccggcaaca gtgcctgggc ttcgggattg
       61 ttgggttgct gctgtagagc ggcctgaacg atctgcaacg cagcttcggg atcgttctcg
      121 agtttgcgtt cggcggacca gaccatctcg gtcacactct ccggcagatc ctcgatgtcg
      181 ttacccggcg gcggtgtttc ctccggtttc tcgccgatca cacgcgcgac gccttcgctg
      241 atcaacgtgt agagctggcc gtaaacatga aacgccgacg cgtgcatgtg ataacagatc
      301 tccgcgaccg acattttctt gtcgacaaaa aacagcacct gccgaaactc cttgccgagt
      361 ttcaacgacg acgtccaacc cgcgttgagt tcgagaatcg agcggtcgga aggcacgagc
      421 gtccggtaac gtgcgagctc gtcgatgcga tagatgcctt ccatgatcac gttggtcggc
      481 tcgacttcga tcagcagcag ctcttccggc agaggatctt cgtcgtaaaa ctcgaagtcg
      541 ccttcttccc acatgaacag gtcgtagatc gcgtcgagcg tgcgcgtctt caggatctcg
      601 agcacttcgg cttcggtcag gtagccttgt tggaccagca cctcgccgag tttggcgccc
      661 gaggtccgct gcacttcgcg cgcggctttc agttggttgt cgtcgacttt gccgtagtga
      721 agcaaaacct ggccgagata ttctcgcggg tcgtttgatt tcgaaccgac gatcatcccg
      781 ttcttgaaat agacctgttt ggtgatcttg tcgcggtcaa acttcaacgt ccctgacttt
      841 cttcccgctg ctaagaactg caggaggtca gtcaggctca ttgttttcaa agtaccttga
      901 atcgccatta actgttcgtg acgaggtgag gctttccccc tgggctttaa tcttcaacca
      961 agtctgccga gatcacggcc gcgtccggac caccttcgcg cgcgatcgcc agcagacgct
     1021 gcaagttctc cgtctgttct tcgtttagct ctacaaactg cactccaaaa ccgaggccgt
     1081 gactatggtg cctgacttcg ccttcgagat acagccactc gccgtcaggc agcagcacgc
     1141 ggaaggcgac gatctcaccc accatcacct cgccgaccgt gtcgaggtag cacccgcctt
     1201 cagaaagatc ggtcacccgc gccgagtggc gctcctcggc atcctgccaa accgcgtcga
     1261 ggtgcacact caaccggggt ctagatcgtc gatcatccat ggcctgaagc catcataaat
     1321 tttttagtga agcacggaaa gaaaaatcta aggtgatggt cacttgcagc ggacgcgaag
     1381 tgcttcgggg atgatctgga aggtcgcggg gagtcttcca ggaagttctc cgtcgacttc
     1441 cagatctact gtcgcaccgc gttctgcggg ccggacggtc acttttcgcg cgagcgcgtg
     1501 gctgacttcg ggcatcgaca ggtgcgaacc gaggtacact cgcggagcgc tcgtgaagat
     1561 cttcatcgcg ccgaggtcgc cgacgcccac gacgtcaaac tttccgtcgg tcagtttcgc
     1621 gtccggagcg atcttcatgc cgccgccgaa gtaacgcgcg ttggcgatgc agagtgtcgc
     1681 gactaaaaga tggcgttcgt gcgcgtcgtc gagttgtact aaaagacgcg tggcttcggt
     1741 gcgcatggcc gtttggagaa gcgacgcgcc gaacgaaacg cgtccgccga gccagcgtgg
     1801 cgtgtttgcc ggtaaccaat caggcccgcc ggctttgacg cgctggatga ctttcgtgct
     1861 caaaccacac gacgtcacgc ccacaaagta acgcatcgct tcgccgccgt cgtgatcgac
     1921 aaacgaaatg cggccgacgt cgatccgccg ggtgcggccg gtgcgcaaca cttgcgcggc
     1981 cgcgcggctg cccgtgggga tttcgagcga gcggcggaag tcgccgcccg ttccactcgg
     2041 caagattccg agttcagcgt ctttgccgga agcgagtatg ccgtttgcga cttcggaaac
     2101 ggtgccgtcg ccgccgcaag cgatgatgag cttgattccc ttccgcgctg catcggcggc
     2161 gatcatagcc gcgtcaccgc gaactttcgt aaacgcggtt tgaaacgcgc caaactccga
     2221 acgcagatca cttgcgacac gcggccacgc ttcgcccgtg ctgccgctcg cggacgatgg
     2281 attaattatt accagcggca gcgccacgca ttctcctgtc ttcctcggcg agttcggcaa
     2341 tctgtcccat gaccatgtcg gcgatctctt tgtgcgtgcg aaggcgatcg ggccggttca
     2401 cgtaaccgct gagatcgatc agcggtccga agtgaatacg aatgacctcc tcgcggttcc
     2461 agttgcgcgc gacctgacgc ggcagactat tacacaggcc cgcgataaac accggaatca
     2521 cctgcggctt cgcttccagt atcaacttcc cgacgcccgg ttgcgcacgc agaaacgaat
     2581 acggatcgtc gttcttgttg cgcgtgcctt cgggatgaaa gccgatgatg ttgcccggac
     2641 cgttgcgcgc gaggtccgtc aacagacgaa acgaaaactt atcaaacgcg cgcttctccg
     2701 gcagcggatg atcgccggtc gcaaagaaag gcgggtacat ggaccaccag cccatgatca
     2761 gattaacaac caaccccagc ggcgactggt aaaagaacct tccgcgcacg ggaaagaaaa
     2821 gctgcttccg ccacttcgtc atgcgaaaca gcatcgccga aacggcatac atgtcgaaga
     2881 aagaacgatg attcgccacc agcaacaacg ggcgctcgcg cgacgcagcc tcgacgtgtt
     2941 cgaggccgta gacgttcatg atgttgtaag tggagagatg aatccacccg gcgcccatcg
     3001 tgctctggca ccacgtccag aacctcttcc acgcaccctg gttcatgcgg cgcgtcacgc
     3061 gataagcaaa ccgttcgaac gaggaaagcg cggccagttc ttctgcggta gggacgacgg
     3121 ttgagtctgt ggaaactggc gccagttctt gcgaacggtt caaaggtgac tcaacagttc
     3181 tcaactgcca actccagaac tactcgatcg agaagtactt cgcctccgga tgatggacaa
     3241 taatagccga agttgactgt tcaggctcca actgaaactc ctcggtgagc gaaacgtcaa
     3301 ttcgcgccgg atcgaggagg gtgaagagct tttcctggtc ttcgaggcgc gggcacgcgg
     3361 ggtagccgaa gctgtaacgc gaaccctggt actgctgatg gaacaggcgc gaaagattcg
     3421 gcgcgtcctg agccgcgata ccgagctctt ctctgatgcg tttgtgccag aactcggcga
     3481 gtgcttcggc cgcttcgaca ctcaaaccgt gaaagtagag atagtcagcg tagttgtctg
     3541 atttgaacag ttcgtgtgaa tactcgctag cgcggcgccc gacggttacg agatgaaacg
     3601 cgaccacgtc catccgtccc gagtcctgcg aggcgaagaa atcggcgaga cacaggtgtt
     3661 tgcccgcagg ctggcgtgga aaagtgaaac gcacctgctc gcgttggtgc tcgttgtaaa
     3721 cgatcagatc gttgccggct gattggcagt tgaagtatcc gtagacgact ttcggaacga
     3781 gcagttgctc acgtttcgag cgctctttca gctcttcgta aaccgggcga accttgtcgc
     3841 gcaccaactc ctgatactgc tcgggcggcg tcttgccttg tttgaactgc cactggcctt
     3901 tgaacagtgc gttctcgttg acgaaagcga agacgttgtc gagcgagatg tcgtcgacga
     3961 cccgcgagcc aaggaaagga ggggtgggga ttggcgcgtc gggggttacg gcagaccgga
     4021 tggtatgcgc tgtgtcgcca cggggttctg ccccacgggg ttgagcgccg cggggaccac
     4081 cgggttcagc gccacgcgga cgcgccgctt tgcgaatgcc gagttttgct tcttcaccga
     4141 cgaggtcttc aacgtcgtcc tcctgatcag ccgcgacctg cgcttgtgag cccgatccgt
     4201 tttcttccgt gtcatccgcg gccccgacga gctggtccat cgtgcgcaaa cccgcaaacg
     4261 catcgtgcgc gtaaaacagc gtacctttat aaatcgactt cagatcctct tcgacatacc
     4321 gccgcgtcaa cgccgcgccg ccaagaatca ccggcacctt taccccgcgc tcgttcatca
     4381 actcgaggtt gtctttcatg atcagcgtcg acttcacgag caagccgctc atcccgatcg
     4441 cgtccgcgcc cgtctcgtcg tacgcctgaa gaatcgcctc aatcgtctgc ttgataccga
     4501 ggttgtgaac cttgtaaccg ttgttcgtga gaatgatgtc gacgaggttc ttgccgatgt
     4561 cgtgaacgtc gcccttcacc gtcgcgagca ccatcgtgcc ctttgcggtc gcgccgccct
     4621 tcttctccat gaacggttcg agaaaacgca ccgcagcctt catcgcttcc gccgactgca
     4681 acacgaacgg caactgcatc tgtccgctgc cgaaaagatc gccgaccacc ttcatgccct
     4741 cgagcagaat gttgttgatg atgtcgagcg ccggatgcgt ttcgagcgcc actttgagct
     4801 cgtcttcgag accaatcttc tcgccgtcga tgatgtggtt cttcaagcgc tcttcaacgg
     4861 tctcgccttt tgacgccttc ttcgccgcct tcgcttta
//
LOCUS       DASWTX010000082         7967 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_130798, whole genome shotgun sequence.
ACCESSION   DASWTX010000082 DASWTX010000000
VERSION     DASWTX010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7967)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7967)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7967
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130798"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..282
                     /locus_tag="VGD38_01375"
     CDS             <1..282
                     /locus_tag="VGD38_01375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726687.1"
                     /translation="KDRKLAVIDAINNLGPDNATELPAPPNPAFESLIESWRARTGAT
                     LEDAVFYTTLATLSDKSEETRILCDGDPQSQWLAKLAQRFGVNRQRRGE"
     gene            279..947
                     /locus_tag="VGD38_01380"
     CDS             279..947
                     /locus_tag="VGD38_01380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726688.1"
                     /translation="MMVDKVHYRVRQMFLYGFPIGTFVATWLYWLLVQGSGFAFPLFL
                     LVIPFLFALAAIRTITGPLRLWTWNMPMLHLAFLWSTYSAMGILIVCDTIAAPFTVTS
                     VIKTVLLCALIGGLIGSLVDIVGIDQGLLELHYMTMDRGTVNSVFSYSFKFFGIFSAI
                     YGALAKVGHYILVELSAPQWLPVLILGASALLIVPFLAHFLLGGKDEQSDVAAPPTSE
                     PPVA"
     gene            complement(853..3609)
                     /locus_tag="VGD38_01385"
     CDS             complement(853..3609)
                     /locus_tag="VGD38_01385"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY0726689.1"
                     /translation="MPTFYEGFRETAERWPNNVAVELQRRDSVESYTYAELLRLGESV
                     GRWLLEQKLEHGARIALIADNSPRWVATFLGIIAAGCAVVPLDTNLDHTQAAKLLKDS
                     DSSWFFADAKHLEVAKEATRGTAIGVLQLDGEPQTDITLDQIFAAGPDGFVSPPSAEE
                     EVACILYTSGTTADPKGVMLSHANFTGELYAAFGWAHIDTKDAVLGVLPLFHVLALVT
                     NLVLPLLMGARVVYLETLNAKEMLRGLAERQITVLSVVPAVFYLIHERIFSEVAARGK
                     LVKFVVRFLMSLSLFLRRFGVNPGKLFFPKVHQVFGGHMRYLLSAGSRFSSPIARDFR
                     AFGLDVMQGYGLTETTGAAFATPPDKIVIGSVGPPLAGLEGKIADPQVEEGIDTPVGE
                     ILIRGASVMKGYWNRPDATQEVLKDGWLYTGDLGYFDARGNLFVTGRKKEVIVLSTGK
                     NIYPEEVEAHYQKSECIKEICVLGLEGASGTERLHAVVVPDFEVLKRRKVVNVREVIR
                     FELEGLSAELPSTKRINSYEIWQENLPRTTTRKIKRFEVQHRVETNQAKGSSETEFES
                     EQALSAEDLAWLAEPDVQKSLAVIRNMSPAKRGAIRPDANLELDLGFDSMQRIELVMA
                     LEQELGATVEQTRLADVYTVRQLVDLLRESTTTDAAHADAAQVSAWHSLLHEAPVDQS
                     VAAVVRRRPAREAFLWVVIRILSVFLHRLFRLRVSGLEKIPQDGPILICPNHQSVIDA
                     IILGTVLPWPVFRRVVLLGTSEFFENRILALLIPRLRIIVVDPDANLVPAMRAGAFAL
                     KENGALIIYPEGERSIDGAPKRFKRGSAILSIHMQAPIVPTAIDGFHDAWPRGKSFQG
                     FKPLQIAFGDPVYPPPESEASTTAYEELTADVRQRVVQMWEELRHRSAHPFRRVENAP
                     GTEQ"
     gene            complement(3613..7839)
                     /locus_tag="VGD38_01390"
     CDS             complement(3613..7839)
                     /locus_tag="VGD38_01390"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY0726690.1"
                     /translation="MPEHAPLGEVNRNRRAVYSSSPALRRQLNQHATNLYPYHPKRVE
                     VCIVGSGVSGLGAALALTRYGHHVTVVDPRPTLGGHACSIALPDGHTVDPAFGSFTAA
                     AYPNVARLFQELDVEIEELGSFKEALSYFSLGGRRNWKRLEDMPFSRRVMEELERFDA
                     WGILADNNLDFVTARDYFAQHGFSEEFIHYVFLGQIVFVFVGQPANYYLDYPIRQLVQ
                     YSYLPVVLAGREPVCRVKHGSASYMVRFTEALAAKGVRFLPSTHAAVVQRDPAGVTMA
                     FSQEGRQWEERFEQVVLSPQPHATLKVLGEHATKVEREILEAIPFTNDTVIIHRDERF
                     MPARREQWRHANMVVADEDEKVDRDRPFLVTKWTKSNLDRETDVFATYAYNRKLDIKG
                     GVPVTFSHVKVTPEVVRLRRRLRAVQGQGRVWFCGSWLRNFTLHEDGLVSGFEAANGI
                     MAGLQEYPVIKPHDLAATKKKAPWGPQHTFLDVLEYQSRLHPSKRALVFVDDDCNETQ
                     VLTYADIRRRSRYVAAQLLNKWKVKPGDRVLLVYEPGLDFVVAFLGTIMAGALPVPAY
                     PPNPKELKKDLQRISAIVESCKANVALTSRSYLRLARIGSALSPTSIWQWPKRLTWHT
                     TDDLTDGEEVTIPQLRITQDDIAFLQFTSGSTAEPRGVMISHGNLMHQLALTTEATGL
                     HEASVGCCWVPQYHDLGLVGCMMIALYNGASYVSCSPLSFLRNPAIWPEMLHRYRATA
                     TAAPDFGYRLLLSRTTPEQRARWDLSRLRVVMSAGEAVHYDTLRDFTQGFAVSGVDAR
                     AFCPAYGLAEHVVAVTIGGSRLYHLDKNELTLRHRLRLGDHRVVGCGKPGLNVQIAIV
                     DPSTCKRCEPDDVGEIWVSSPSKARGYYNEPEISKAVFEARISRNGHEEDDGRTWLRT
                     GDLGFMHHGELFITGRLKDLIILRGRNIYPVDIERAAEAASRSLRPGCSALFTDNSQA
                     DEALILCAELRKGRYNNSDYANIAVAIRREVMKQAGVHIGTVAFLPARTVPKTTSGKL
                     RRNACRTRWHERSLKPLYVDNGVNEAASLPLPRHSEVASTEDVIHAAVCEVTRCDVDR
                     NIPLTDQVILDSVEFLSLVNLLEQRLQVRLPVTILNRYPTVVALAEYLRSNSDMALPD
                     PALVTLNGNEENGAAPLFLVHPARGGVECFLELARRLDFPITAIRQTGNGTSVEELAT
                     RYIAAMKTVSPNGPYTLGGYSFGATICRAMALELERRGEQVSGLLLLDEIHRPPSSLT
                     TNGRGERGGLLFEIAREYLTGADLVLLDNALSDHGDNDLDLVLKAVADPASRKAIADQ
                     VRRYEHNVRLAVNYEAPRPQAKMVLLRTATAYHRAPELMTEIHDVPGDHSTMLTAPHV
                     DTLATLVRNVLATFDSPETAPSSLSKTTSI"
BASE COUNT         1625 a         2351 c         2334 g         1657 t
ORIGIN      
        1 aaggatcgca agctcgcggt gatcgacgcg atcaacaatc tcggccccga taacgcaact
       61 gagcttccag cgccgcccaa tcctgcattc gaaagtctga ttgaatcatg gcgcgcgcgc
      121 acgggcgcca cgcttgaaga cgcggtcttt tacaccacgc tcgcaacgtt aagcgacaag
      181 agcgaagaga cgcggatttt gtgcgacggc gatcctcagt cacaatggct tgcaaaactc
      241 gcgcaacgtt tcggcgttaa cagacaacga cgaggtgaat gatggtcgat aaggttcatt
      301 atcgagtccg gcagatgttc ctttacggat ttccgatcgg gacgtttgtg gcgacttggc
      361 tctactggct gctcgtccag ggctcgggct tcgcctttcc cctctttctt ctcgtcattc
      421 catttctctt cgcgctcgcg gccatccgca ccatcacggg accgctccgt ttatggacct
      481 ggaacatgcc gatgcttcat ttagcgttcc tgtggtccac ctactcggcg atgggcattt
      541 tgatcgtgtg cgacacgatc gcggcgccgt tcacggtgac gtcagttatc aagaccgtgc
      601 ttttgtgcgc gttgatagga ggtttgatag gaagcctcgt cgatatcgtc ggcatcgatc
      661 agggtctact cgaattacat tacatgacga tggaccgcgg aaccgtgaac tcggtgttct
      721 cctacagttt caagttcttc ggaatcttca gcgctattta cggtgcgctt gcgaaggtgg
      781 gccactacat tctggtggaa ctatccgcgc ctcaatggtt accggtgctg atcctcggcg
      841 cgagcgcgtt gctcattgtt ccgttcctgg cgcattttct actcggcgga aaggatgagc
      901 agagcgatgt cgcagctcct cccacatctg aaccacccgt tgcctgacgt ccgccgtgag
      961 ctcctcatac gcggtggtcg aggcttctga ctcgggcggc ggataaacgg gatcgccaaa
     1021 cgcgatctgc aacggtttga atccctgaaa agacttgcca cgcggccacg catcgtggaa
     1081 cccgtcgatc gccgtcggca cgatcggcgc ttgcatgtgg atcgacaaga tcgccgaacc
     1141 tcgtttgaat ctctttggcg cgccgtcaat cgatcgctcg ccttccggat aaataatcag
     1201 cgcgccgttt tctttcaacg caaacgctcc cgcgcgcatg gcgggaacga gattggcatc
     1261 gggatcgacg acgatgatcc gcaatcgcgg tatcaaaagc gcgaggatac ggttttcaaa
     1321 aaactcactc gtgcccagta acacgaccct tctgaagact ggccacggca ggaccgtgcc
     1381 caaaatgatc gcgtcgatca cgctctgatg attcggacag atgaggattg gaccatcctg
     1441 cgggatcttt tccaagccac ttactcgcag acgaaagaga cggtgcagga acaccgatag
     1501 gatgcgaatg acgacccaaa gaaacgcttc gcgagccgga cgccgccgca ccactgccgc
     1561 gactgattgg tccaccggcg cttcatgcag aaggctgtgc cacgctgaaa cctgcgcggc
     1621 gtctgcgtga gcagcgtctg tggtcgtgct ttcacgcagg agatcgacga gttgacgcac
     1681 cgtgtaaaca tcggcgagcc gcgtttgttc gaccgtcgcg ccgagttcct gttcgagcgc
     1741 catcacgagc tcgatccgct gcattgaatc aaacccgaga tcgagttcga gatttgcgtc
     1801 aggtctgatc gcgccgcgtt tcgcaggcga catgttacga atcaccgcga gagatttctg
     1861 tacgtcgggt tcagctaacc acgccaggtc ctccgcgctc agcgcctgct cggactcgaa
     1921 ttcagtttca ctcgatcctt tggcctgatt cgtctcgact ctgtgttgga cctcgaagcg
     1981 tttgatcttg cgtgtggtcg tgcgcggaag gttctcttgc cagatctcgt agctgttgat
     2041 gcgttttgtt gagggaagtt ccgctgagag tccttcgagt tcgaaacgga tcacttcccg
     2101 aacgttgacg accttgcgcc gcttgagcac ttcgaagtca ggtacgacaa cggcgtgcaa
     2161 tcgttcagtg ccggaagcgc cctccagccc cagaacgcaa atctccttga tgcattccga
     2221 cttttgatag tgagcttcga cttcttcggg gtagatattt tttccggtgc tgaggacgat
     2281 gacttctttc ttgcgtccgg tgacgaagag attgccgcgc gcgtcgaagt agccgaggtc
     2341 gccggtgtac agccagccgt ctttgagcac ctcttgcgtg gcatcgggcc ggttccaata
     2401 acccttcatc accgacgcgc cgcgaatcaa aatctcgccg actggcgtgt cgatgccttc
     2461 ctcaacctgc gggtccgcaa tctttccctc taaaccggcg agcggtggtc caaccgagcc
     2521 gatcacgatc ttgtcgggcg gcgtcgcaaa cgcggcgccg gtagtttcgg tcaaaccgta
     2581 accctgcatc acgtcgagtc cgaacgcgcg aaagtcacgc gcgatcggcg aactgaaacg
     2641 cgaacccgcg ctcagcaggt aacgcatgtg tccaccgaat acctggtgga ctttcggaaa
     2701 gaacaacttg ccggggttca cgccgaaccg ccgcaggaac aacgagagcg acatcaggaa
     2761 ccgcacgacg aatttgacca gctttccgcg cgccgcaacc tcgctgaaga ttcgttcgtg
     2821 gattaaatag aagacagccg ggacgactga gagcacggtg atctggcgct ccgccaaacc
     2881 gcgcagcatc tctttggcgt tcagtgtttc gaggtagacc acgcgcgcgc ccatcagcag
     2941 cggcagcacc aggttcgtca cgagcgccaa tacgtgaaag agcggaagta cgccgagcac
     3001 ggcatccttc gtgtcgatgt gagcccagcc aaacgcggcg tagagttcgc cggtgaagtt
     3061 ggcgtggctg agcatgacgc ctttcggatc ggctgtcgtg ccggacgtgt agagaatgca
     3121 ggcgacttct tcttctgccg acggcggtga gacgaagccg tctggaccag ccgcgaagat
     3181 ctggtccaac gtgatgtcag tctgcggttc gccgtccagt tgcaggactc cgatcgccgt
     3241 gccgcgcgtg gcttcctttg cgacttccaa atgctttgcg tcagcaaaga accacgagct
     3301 gtcactgtct ttcagtagtt ttgcggcttg tgtgtgatcg agattcgtgt cgagcggaac
     3361 aactgcgcaa ccagcggcga tgatgccgag aaaggtcgcg acccagcgcg ggctgttgtc
     3421 tgctatcaac gcgattcgcg caccatgctc cagcttctgc tccaacagcc agcggccgac
     3481 tgattctccc aggcgcagca actctgcata cgtgtaactc tcgacgctgt cgcggcgctg
     3541 cagttccacc gccacattgt tgggccaacg ttcggcggtc tcgcgaaagc cttcgtaaaa
     3601 agtcggcatg gattagatgg acgtggtttt gctgagagat gaaggcgcgg tttccggtga
     3661 gtcgaaagta gcgagcacgt tccgtacgag cgttgccagc gtgtccacgt gtggcgcggt
     3721 caacatggtg gaatgatctc cgggcacgtc gtggatctcg gtcatcagtt ccggcgcgcg
     3781 atggtaagcg gtcgcagttc gcagcagcac catcttcgcc tgcggccgcg gtgcttcgta
     3841 gttaactgcc agccgcacgt tgtgttcgta gcggcgcacc tgatccgcaa tcgctttgcg
     3901 tgaagccgga tcggcaacgg ccttgagcac caaatcaaga tcgttgtcgc cgtgatcgga
     3961 aagcgcattg tcgagcagca ccagatccgc gccggttaaa tactcgcgtg cgatttcgaa
     4021 taacaatccg ccgcgttccc cgcgcccgtt agtggttaac gaagatggcg gccggtgaat
     4081 ctcgtcgagc aacagcaacc cggaaacttg ttctccgcga cgttcgagct cgagtgccat
     4141 cgcgcggcag atagttgcgc cgaagctgta gccgcccaag gtatacggac cgtttggact
     4201 cacagtcttc atcgcggcga tgtaacgcgt cgccagttct tcaactgaag taccgttccc
     4261 ggtctggcga atcgcagtga tcggaaaatc tagacgacgc gccagttcaa gaaaacactc
     4321 gacgccgcca cgcgcaggat gcacgaggaa aagcggtgct gcgccgttct cttcgttgcc
     4381 gttcagcgtg accaaagccg gatcgggcag cgccatgtcc gagttgctcc gcaggtactc
     4441 ggcgagcgcg acgaccgtcg gatagcgatt caggatcgtc accggcaatc gcacctgaag
     4501 acgttgttcg agcaagttga cgagactcag aaactccacc gagtcgagaa tcacctggtc
     4561 agtcagcgga atattccgat cgacgtcgca gcgggtaact tcacaaacag cagcatggat
     4621 cacatcttcg gtgctggcca cttcgctgtg ccgcggaagc ggaagcgacg cagcctcgtt
     4681 cacaccgttg tcgacataga gcggcttgag cgagcgttca tgccagcgcg tgcggcacgc
     4741 gttgcggcgt aacttgccgc tcgtcgtctt cggcaccgtg cgcgcgggca gaaacgcgac
     4801 cgtaccgatg tgcacgcctg cctgcttcat cacttcacga cgaatcgcga ccgcgatgtt
     4861 tgcgtagtct gaattgttgt agcgtccttt gcggagttcg gcgcagagaa tcaacgcctc
     4921 gtctgcttgc gaattgtcag tgaacagagc cgagcagccc ggacgcaacg agcgcgaggc
     4981 ggcttcagcc gcgcgttcga tatcaaccgg atagatattg cgtccgcgca gaatgatcag
     5041 gtccttcaac cggccggtga tgaacaactc gccgtggtgc atgaacccca agtcgccggt
     5101 gcgcagccac gtgcggccat catcttcttc atgcccgttt cgactgatgc gcgcttcaaa
     5161 caccgctttc gaaatctcgg gctcgttgta atagccgcgt gctttgctcg ggctcgatac
     5221 ccaaatctcg cccacgtcat cgggctcaca acgtttacac gtcgacggat cgacgatcgc
     5281 gatctggacg ttgagtccgg gtttgccaca gccgaccacg cgatgatcgc caagccgcaa
     5341 gcgatgacgc agcgttagtt cgtttttgtc gagatggtaa agacgcgagc cgccgatcgt
     5401 cacagcgacg acgtgttcgg cgagaccata cgcgggacaa aacgcgcgcg catcaacacc
     5461 ggaaaccgca aagccctgcg tgaagtcgcg cagcgtgtcg tagtgaaccg cctcgcccgc
     5521 gctcatcacc acgcgcaggc ggctcaagtc ccaacgcgcg cgttgctccg gtgtggttcg
     5581 cgaaagcagc aagcgataac caaaatcggg cgcggccgtc gcggtcgcgc gataacgatg
     5641 aagcatctcg ggccagatcg ccgggttgcg cagaaaactc aacggcgaac acgacacgta
     5701 agacgcgccg ttgtagagcg cgatcatcat gcagccgacg agaccgagat cgtgatactg
     5761 cggcacccaa cagcaaccga cgctcgcctc gtgcagcccg gtcgcttcgg tcgtcaacgc
     5821 gagctggtgc atcagattgc cgtgactgat catcacgccg cgcggttccg cagtggaacc
     5881 ggaagtgaat tgcagaaacg cgatgtcgtc ctgggttatg cgcagttgcg gtatcgtcac
     5941 ctcttcgcca tcggtcagat catccgtcgt gtgccaggtc agacgcttgg gccattgcca
     6001 gatcgacgtc gggctcaacg ccgaaccgat acgcgcgagg cgaagatagc tgcgcgaggt
     6061 gagcgcgaca ttggccttgc aactctcaac gatcgctgag atgcgttgca gatctttctt
     6121 gagctctttt ggattcggcg gatacgccgg caccggcagc gcgccggcca tgatcgtgcc
     6181 gagaaacgcg acgacaaaat ccaaccccgg ctcgtaaacg agcaggacgc gatcgccggg
     6241 tttgactttc catttgttga gcaactgcgc cgcgacataa cgcgagcgcc gccggatgtc
     6301 ggcatacgtg agcacctgcg tttcgttgca gtcgtcgtcg acaaacacga gcgcgcgctt
     6361 cgacgggtgc aggcgcgact gatattcgag cacgtcgaga aaagtgtgtt gcggtcccca
     6421 cggcgccttc ttctttgtgg ccgcgaggtc gtgcggtttg atgaccggat attcctgcaa
     6481 gccggccatg atgccgttgg cggcttcaaa acccgacacg agaccgtctt cgtgaagcgt
     6541 gaagtttcgt aaccaactgc cgcagaacca cactcgtccc tgtccctgaa cggcgcgcaa
     6601 tcttcgtcgc aggcgcacga cttcaggcgt gactttgacg tggctgaagg taaccggcac
     6661 accgcctttg atgtcgagct tgcggttgta cgcgtaagta gcgaacacgt ccgtttcgcg
     6721 atcgagattg ctcttggtcc acttcgtgac gaggaacggg cggtcacgat ccactttttc
     6781 atcttcgtcg gcgacgacca tgttggcgtg acgccactgc tcgcgccgcg cgggcataaa
     6841 tcgttcgtcg cgatgaatga tcaccgtgtc gttagtgaac gggatcgctt cgaggatttc
     6901 gcgttcgact ttggttgcgt gttcgccgag cacttttaac gtggcgtgtg gctgaggaga
     6961 caggaccact tgttcgaaac gttcttccca ttgccgtcct tcttgcgaga acgccatcgt
     7021 gacaccggcg ggatcgcgtt ggaccacggc cgcgtgagtt gaaggcagga accgcacgcc
     7081 tttggccgcg agcgcttcgg taaaccgcac catgtatgac gcggagccgt gtttgacgcg
     7141 gcagacgggt tcgcgaccgg cgagcacgac cggaagatac gagtattgga ccaactgccg
     7201 gatcggataa tcgagatagt agtttgcggg ctggcccaca aacacgaaca cgatctggcc
     7261 gagaaagacg tagtgaataa actcttcgga gaagccgtgc tgtgcgaagt aatcgcgcgc
     7321 ggttacgaag tcgaggttgt tgtccgcgag aatgccccac gcgtcgaagc gctccagttc
     7381 ctccatcacg cggcgtgaaa acggcatgtc ttcgaggcgc ttccaattgc ggcgcccgcc
     7441 gagcgagaag taggagaggg cttctttaaa cgatccgagc tcttcgatct cgacgtcgag
     7501 ctcctgaaag agacgcgcca cgtttggata cgcggcggcg gtaaaagatc cgaacgccgg
     7561 atctaccgtg tggccgtcgg gcaacgcaat ggaacacgcg tgaccgccca aagtcggccg
     7621 tggatcgaca accgtcacgt gatgaccgta acgcgttaag gccaacgccg ctcccaagcc
     7681 ggacacgcca gaaccgacga tacaaacttc gacgcgcttc gggtgatagg gataaagatt
     7741 cgtcgcgtgt tggttgagct gacgccgcaa cgcgggcgag ctcgaataca ccgcgcggcg
     7801 atttcggttt acttcgccta acggtgcgtg ttccggcaag caatgataga gattgaacgc
     7861 gacggcctcg tcacgcgctg cgtgttccgg ttggttgaca ctctgccgcg agatccgaac
     7921 ctcgccgacc tttatcaacg gaccttgcca ttcgactcgc ggatctt
//
LOCUS       DASWTX010000083         2969 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_87432, whole genome shotgun sequence.
ACCESSION   DASWTX010000083 DASWTX010000000
VERSION     DASWTX010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2969)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2969)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2969
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87432"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1569)
                     /locus_tag="VGD38_01395"
     CDS             complement(<1..1569)
                     /locus_tag="VGD38_01395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726691.1"
                     /translation="MTIFRSFEREGHYRLLPSELAIANRGDNRPEFLLELVRGQTPLL
                     PPSPYGVVDFRVRPQFRTDEALVILRKQQANAMLEEAAFVSGFLRLTALNDVVATAPE
                     LFKPVPLAWNGLDVARFVLRLPLSPALLLKKALLAEALPLTAIAEMFISGVSPRLPIA
                     VRFDPALLMSRVVAAANSQEILWQDLVQFFRRDIELLPLQVAGGEKNPDLDEFAHALA
                     DRVAHRYGTFVPSSKSDGQAYLRLQAPGEIGSGSFEWDLSQPITVTRPLVLTFNPLTV
                     ARQLIRDVGEDSVIRETTVPALRIGTAHLTIRANLPPERLGVLSLGVTITAPPRPPIR
                     SQAIIETVEFVAPVDSATALLRLSPAEKPNYTFKTFVVMEDGMKRHEGRELPHSGEYL
                     TLQPADFPITFVPIEAAPDLLEIADVRGACVLSKNGSQFQHTFKLTSDRPAVVIALLK
                     EKTAATLEIEARSKDGQRVLALHSLPAAPLRVGLTAFPEYGPHQIDIECAFTSELQLV
                     AVDLIPEQGSDPADI"
     gene            complement(1624..>2969)
                     /locus_tag="VGD38_01400"
     CDS             complement(1624..>2969)
                     /locus_tag="VGD38_01400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726692.1"
                     /translation="PPQTPLFRQVDRVIDHNISPSPFVFPPALHGYIFGTISPTPGGQ
                     FDLVRHQVPWKGQMHSYYQNPIRSYQFYYLPDSFKVARRPKPPYEPVISVRFAATEAS
                     FDKVQVAMDYIALPFVDANRLEAAVQTLKTKISGTVPPDVNGLSYEPLLNPADKTHLR
                     VAIPRGDASSAFDERKDALVDLRSGIHDSLSLMMPQFQAVYDAMFGSSNILLSGTVTM
                     DLGGDQESIPFAARLNDLVGQVFEYREQWSKEEGLKATFRNAIESPVQIRRLSAILTR
                     NLERFPATIQGLNLTEPIRVEPNAEISFQVVPTSPITGEGAVTAKYDLDGVEVLPDKE
                     AVWNLVLDPSTPGVFIRPLKVKTHKQRFDAPADKPDNQIMSLVVDFEDGNSVELNAEN
                     LEEEVGLRVPVGDFVLRKTDARQYRYKVRVIRLSGITADQDWRTDDTGILFPMVS"
BASE COUNT          642 a          808 c          873 g          646 t
ORIGIN      
        1 tatatctgct ggatcgctgc cctgctcggg tattagatcg acagccacga gctgtagctc
       61 gcttgtgaaa gcacactcga tatcgatctg atgtgggccg tattcaggaa acgctgtcag
      121 tccgacgcgc agaggcgccg cgggcagtga gtggagcgcg agaacgcgct gaccatcttt
      181 ggaacgcgcc tcaatctcga gagtcgccgc cgttttttct tttaagagcg cgatcacaac
      241 cgccgggcga tcgctcgtga gcttaaatgt gtgctgaaat tgcgaaccgt tttttgaaag
      301 aacgcaggcg ccgcgaacgt ccgcgatctc cagcaaatcg ggcgctgctt cgatcggcac
      361 gaacgtaatc ggaaagtctg ccggttgtaa ggtcagatac tctccactgt gcggtaactc
      421 ccgcccttca tgtctcttca tgccgtcttc catgacgacg aatgttttga aggtgtagtt
      481 tggtttctca gcaggagaca ggcgtagcag cgccgtcgca gagtcgacgg gtgcgacgaa
      541 ctcaacagtt tcgatgattg cctgagaccg tatcggcggc cgtggtggcg cggtaatcgt
      601 cactccgagc gagagcacgc ccaacctctc gggtggaaga ttcgcgcgaa tggtgaggtg
      661 cgctgtgccg atcctgagcg cgggtacggt agtttccctg attacggagt cctcgccaac
      721 gtcacggatc aactgccgtg cgacggttag cggattgaag gtcagcacga gcgggcgcgt
      781 aacagtaatc ggttgagaca agtcccactc aaaacttcca ctgccgatct cgcccggcgc
      841 ttgtaagcga aggtatgcct ggccatcgct ttttgacgac ggcacgaatg ttccataacg
      901 atgagcaaca cggtcggcta gtgcatgcgc aaactcgtca aggtccggat ttttttcgcc
      961 gcctgcgacc tgcaaaggca gcagctcaat gtcacgacga aagaactgaa ccagatcctg
     1021 ccaaaggatc tcttgtgagt ttgcggcggc cacaactctg ctcatcagaa gagccggatc
     1081 gaaacgcacg gcgatcggta aacgcggtga gactcctgag atgaacatct cggcgatggc
     1141 cgttagtgga agggcttcag caagcaaggc cttcttcagc aacagcgccg ggctaagtgg
     1201 aagccgcaga acaaaacgcg cgacgtccaa cccgttccag gccagcggca cgggtttgaa
     1261 taattccggg gcggtggcga ctacatcatt cagcgccgtt aagcgaagaa agcccgagac
     1321 gaacgctgct tcttcgagca ttgcgttcgc ttgttgcttt cgcagaatga caagcgcttc
     1381 atcagttcgg aattgcggcc gcacccggaa gtcgacgact ccataaggcg acggcggaag
     1441 cagcggagtc tgaccacgga ccaactcgag caaaaactcc ggacggttgt ctccgcgatt
     1501 cgctatcgcc agctccgacg gcaataaccg gtagtgacct tctctctcga acgatcgaaa
     1561 gatggtcatt ccctgctcga ccagaggccg ttggaaatct atgtcaccag ttaccggcat
     1621 ttcttagctc accatcggga aaaggattcc cgtgtcgtca gttctccaat cctgatccgc
     1681 ggtgattccc gacaagcgga taaccctgac tttgtagcgg tactgtcgcg cgtcggtttt
     1741 tcgtaagacg aaatcgccaa ccggcactcg cagtcctact tcctcttcga ggttctcggc
     1801 gttgagctca accgagttgc catcctcgaa gtcgacgacg agcgacatga tttgattgtc
     1861 tggtttgtcg gcgggcgcat cgaatcgttg tttgtgagtc ttcaccttga ggggacggat
     1921 aaagacgccc ggcgtgctcg gatcgagcac gaggttccag acagcttcct tatccggaag
     1981 gacttccacg ccgtcgagat cgtacttggc ggtgacggcg ccttctcctg ttatcggcga
     2041 cgtgggaacg acctgaaacg atatttccgc gttgggttca actcgaatcg gttcagtcag
     2101 gttcagaccc tggatcgttg ccgggaagcg ctcgagattg cgagtcagga tcgcggagag
     2161 gcggcgaatc tgcaccggac tttcgatcgc gtttcggaag gttgctttca gtccttcctc
     2221 tttggaccac tgctcgcgat actcgaagac ctggcccacg agatcattca gacgcgcggc
     2281 aaagggaatc gactcctgat cgccgcccag gtccattgtc acggttcccg aaagaaggat
     2341 gtttgagctg ccaaacatcg cgtcataaac cgcctggaac tgaggcatca tcagagacag
     2401 cgaatcgtga atgccgctcc gcagatcgac gagcgcgtcc ttgcgctcgt caaatgccga
     2461 cgacgcatcg cctcgcggaa tagccacgcg caggtgtgtt ttgtctgcgg gattcagtag
     2521 cggctcgtac gacaacccgt tcacatcggg tggcacagtt ccgctgattt ttgtctttag
     2581 cgtctggacg gcagcttcga gacgattggc gtcgacgaat ggcagcgcta tgtaatccat
     2641 ggcgacttgc actttgtcga acgaagcttc tgtcgcggca aaacggactg agatcacggg
     2701 ctcgtacggc ggctttggtc tacgcgcgac tttgaatgaa tcaggcaggt agtaaaactg
     2761 gtaagagcgg atcgggttct ggtagtagct gtgcatttgc cctttccagg gcacctgatg
     2821 acggacgaga tcgaactgtc cgcccggcgt gggggaaatg gtgccaaaga tgtaaccgtg
     2881 cagcgctggc gggaacacga acggactggg agagatgttg tgatcgataa cgcggtccac
     2941 ttgtcgaaac agtggtgttt gaggtggag
//
LOCUS       DASWTX010000084         1878 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_174155, whole genome shotgun sequence.
ACCESSION   DASWTX010000084 DASWTX010000000
VERSION     DASWTX010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1878
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174155"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1718
                     /locus_tag="VGD38_01405"
     CDS             <1..1718
                     /locus_tag="VGD38_01405"
                     /inference="COORDINATES: protein motif:HMM:NF036516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEY0726693.1"
                     /translation="EKPLQFQMAKWSPGRYGVFDFAKNVQEFRAFDGACPPAASCTGK
                     STRVVTRIDGQTWSVAPAGSSTVTVSYKVFANDLSGTFSQLDERHANYNGASIFMYAV
                     GHKPDPVKLTINPPAGWKIVNGWIDKPGQTQWQFPNWDVMIDTSTEIAPDWTQDTFEV
                     DGKKYHVVVHSFGPEGGKRPALVRDIEKIVRAQVAMWGPPDFSEYTFLIHYAADDHSG
                     DGMEHLTSTQIIEPGALEEPGVYEDTLGTVSHEFFHVWNVKRLRPVELGPWDFTRPLN
                     TRALWVAEGFTNYYGHLFMRRAGLWDEKTFLKRAAETIRRIESAQGSQLMSAEESSLS
                     APFIDDAPHAQATNLENTSISYYPKGELIGMVMDLLIRGKTNGKFSLDDVMRRMYDEF
                     YVKSPNSSYYLRGRGYQTEDLERVVTEMAGAEFHDLFKRHVRDVEVLPYDEAFGFAGL
                     RLIKTQAKEPYNAGLSLQVEDAETLVIENVRNGSPAETAGLQKGDEIVTLASKKVSAI
                     TWLKTLARYKKGEAVSFVVKRDRRTIKGEMILGDPDRYEYRIEEKANVTDQQRAIRSA
                     WLNGK"
BASE COUNT          421 a          458 c          587 g          412 t
ORIGIN      
        1 aagaaaaacc gcttcagttt caaatggcca agtggtcgcc gggtcgctac ggagtctttg
       61 acttcgccaa aaacgttcag gaatttcgcg cttttgacgg cgcctgcccg cctgccgcct
      121 cctgtaccgg gaaatccact cgagtagtaa cgcgtattga cgggcaaacc tggagcgtcg
      181 cgccggcggg aagttctacc gtcactgttt cttataaagt ctttgccaac gacctctccg
      241 ggaccttctc tcagctcgac gaacggcacg cgaactacaa cggcgcttcg atcttcatgt
      301 acgccgtcgg ccataaaccc gatccggtga agttaaccat caatccgccc gccggatgga
      361 agatcgtcaa cggctggatc gacaagcccg gccagacgca atggcagttt cccaactggg
      421 acgtcatgat cgatacgtca accgagatcg cacccgattg gacgcaggac acgtttgaag
      481 ttgacggtaa gaagtatcac gtcgtggtcc actcgtttgg accagaaggc ggcaagcgtc
      541 ccgcgctcgt gcgcgacatc gagaagatcg tgcgcgcgca ggtagcgatg tggggaccgc
      601 cggacttttc cgaatacact tttttgattc actacgcggc cgacgatcat tccggcgacg
      661 gcatggaaca cctgacctcg acgcagatca tagaaccggg cgcgctcgaa gaacccggcg
      721 tttatgagga cacgctcggc actgtctcgc acgaattctt tcacgtgtgg aacgtcaagc
      781 ggctgcgtcc ggttgaactt ggaccatggg attttacgcg gccgctcaac acgcgcgcgt
      841 tgtgggtagc ggagggtttc accaactact acggacacct gtttatgcga cgcgcggggt
      901 tgtgggatga gaagacgttt ctcaaacgcg cggctgagac gatcaggcgg atcgagagcg
      961 cgcagggtag ccagttgatg agtgctgaag agtcgtcgct gtcggcgccg tttattgacg
     1021 atgcgccgca tgcgcaagca acgaatctgg agaacacgtc gattagttat tacccgaaag
     1081 gcgagctgat cggcatggtg atggatcttt tgattcgtgg gaagacgaac gggaagtttt
     1141 cgttggatga tgttatgcgg cggatgtatg acgagtttta tgtgaagagt cccaacagca
     1201 gttattactt gcgcgggcgt ggttatcaga ctgaagacct ggagcgagtg gtaaccgaga
     1261 tggcgggcgc ggagtttcac gatttattca aacggcacgt tcgcgatgtc gaagtgctgc
     1321 cttacgacga ggcgtttggt tttgcggggt tgcgtttgat caagacgcag gcgaaggagc
     1381 cgtacaatgc ggggctgtcg ctgcaggttg aggatgcgga gacgttggtg attgagaatg
     1441 tgcgtaatgg atcgccggcg gagactgccg ggctgcagaa gggtgatgag atcgttacgc
     1501 tggcgtcgaa gaaggtgagt gcgattacct ggttgaagac gctcgcacgt tataaaaaag
     1561 gagaagcggt ttcgtttgtc gtgaagcgcg atcggcggac gatcaaaggg gaaatgattt
     1621 tgggagatcc cgatcgctac gagtacagga ttgaagaaaa agccaatgtc acagatcagc
     1681 aacgcgcgat tcgttctgct tggttaaacg gaaaatagtt tcagggtacg atgacttcta
     1741 gtgactccga tgcgatctcg aagcgcatcg ggagttgacc gatgagttcg ccgtcgactt
     1801 gaactggtgc gtcgccgaga gcgcgcacgg cggcggtttt gagaaatttt acttccggtt
     1861 ggtcctgcgg cattccag
//
LOCUS       DASWTX010000085         1666 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_152645, whole genome shotgun sequence.
ACCESSION   DASWTX010000085 DASWTX010000000
VERSION     DASWTX010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152645"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..638)
                     /locus_tag="VGD38_01410"
     CDS             complement(<1..638)
                     /locus_tag="VGD38_01410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726694.1"
                     /translation="MAEAKETLVAGPGGEVKSSQKLHPLVELTLTRVREFLREKEAVF
                     WVFVFPVLMTFALGIAFRNTAPDKTLVAIEAEAGATNPRVSETANILSQSAEVTASVL
                     SPDEAAQALRSGKVSIVVKPQNDSFEYRFDPTRPESRAARLLVDDVLQRGKGRTDVAK
                     VGEEKVTEPGARYVDFLVPGLIGMNLMGSGLWGLGFTVVISRSRKILKRLAAT"
     gene            complement(631..1506)
                     /locus_tag="VGD38_01415"
     CDS             complement(631..1506)
                     /locus_tag="VGD38_01415"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0726695.1"
                     /translation="MTAVNGLDLEVFAGECFGLLGPNGAGKTTTVEILEGLTPADEGS
                     VELLGQVWNGGDNRTLRERIGVQLQETQLAEKVTVEETVRLFRSFYQRGHGVDEVIRT
                     VGLEEKRNARVGKLSGGQKQRLAVACALVSDPELLFLDEPTTGLDPQARLSLWDIVEK
                     FREGGGTILLTTHYMEEATRLCDRVAIMDHGKVIALGTPAELIESLGADQVIEFSVTN
                     GLADDELTNLPAVTNLHKRGEVYALTVSEIGIALPALLAEIKRQQSEIVTLTTHQATL
                     EDVFVSLTGRMLRDG"
BASE COUNT          339 a          563 c          417 g          347 t
ORIGIN      
        1 gttgcagcta agcgcttcag aatttttcgc gaacgcgaga tcaccaccgt gaatcccaat
       61 ccccacaacc cgctgcccat caggttcatg ccgatcaaac ccggcacgag aaaatccacg
      121 taacgagcgc ccggttcagt gaccttctct tcaccaacct tcgcgacgtc ggttcgccct
      181 ttgccgcgtt gcaacacgtc gtcgacgagc agtctcgcgg cgcggctttc cggccgtgtc
      241 ggatcgaaac gatattcaaa cgaatcgttc tgcggtttga cgacgatcga caccttgccg
      301 ctgcgcaacg cttgcgctgc ttcgtcggga ctcaacacag acgccgttac ctcagcagac
      361 tgcgacaaga tgttggccgt ctcgctgact ctcggattcg tcgcgccggc ttcagcttca
      421 atcgctacga gcgtcttgtc cggcgccgtg ttgcgaaacg caatcccgag cgcaaacgtc
      481 atcaacaccg gaaacacgaa cacccaaaac acggcttcct tctcgcgcag gaactcgcgc
      541 acgcgcgtca acgtcaactc gaccagcgga tgaagcttct gcgaagactt cacttcacca
      601 ccaggccccg caaccagtgt ttctttcgct tcagccatcg cgcaacattc tcccggtcaa
      661 actaacaaac acatcctcaa gcgtcgcctg gtgcgtcgtg agcgtgacaa tctccgactg
      721 ctggcgtttg atttccgcga gcaacgccgg cagcgcgata ccgatctcgg aaaccgtgag
      781 cgcgtaaacc tcgccgcgtt tgtgcagatt cgtcacagca ggaagattgg ttaactcatc
      841 gtccgccagc ccatttgtca cgctgaattc gatgacctga tccgcgccga gcgattcgat
      901 cagctccgcg ggcgtgccga gcgcgatcac ttttccgtgg tccatgatcg cgacgcgatc
      961 gcagagacgc gtcgcttctt ccatgtagtg cgtcgtgagc aggatcgtgc cgccgccctc
     1021 gcgaaacttc tcgacaatgt cccacagcga cagccgcgct tgcggatcga gtcccgtcgt
     1081 cggctcgtcg agaaacaaga gctccggatc gcttaccagc gcacaggcga ctgcgagccg
     1141 ttgtttctgt ccgccggaaa gtttaccgac gcgcgcgttt cgcttctctt cgagaccgac
     1201 tgtgcgaatc acttcgtcaa caccgtgacc gcgctggtag aaactgcgaa acagccgcac
     1261 cgtttcctcg accgtgactt tctccgcgag ttgcgtctct tgcaactgca cgccgatacg
     1321 ttcgcgcagc gtgcgattgt cgccgccgtt ccaaacctgg cccaacaact cgacactgcc
     1381 ttcatccgcg ggcgtgagtc cttcgagtat ctcgacagtc gtcgtcttac cggcgccgtt
     1441 tggtccaagc agaccaaaac attcgcccgc gaacacttcc agatcgagcc cgttcacggc
     1501 agtcacatcc gtgaatctct tgaccagccc cgtgcaacgc aatgccacgc gctgcgttga
     1561 tatcctcgtc gacataaagg cttatcccgt tttcaagagc ataaccgcgt cgctgctgct
     1621 gaacattcct gcgacacatc cggtcatcaa cgtcgcgaga gtcgcc
//
LOCUS       DASWTX010000086         3038 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_282842, whole genome shotgun sequence.
ACCESSION   DASWTX010000086 DASWTX010000000
VERSION     DASWTX010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3038
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282842"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..835
                     /locus_tag="VGD38_01420"
     CDS             <1..835
                     /locus_tag="VGD38_01420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726696.1"
                     /translation="GTGKTAVAERINGALAGGIWIPFAVEIDGQIIRVFDSHCHEPMP
                     ADETPTEYDRRWVLIQRPLVVVGGELTLENADLTWSEAAKFYEAPFQMKSNGGTLVID
                     DFGRQRVAPQDLLNRWIVPLERRVDYLALHTGKKIEVPFEQLVVFSTNLEEKDLADQA
                     FLRRMGYRARVEPPTAEAYSAIFRAQAQKRKIVVEQPVLDHILTKYRVEHRQMKGCEP
                     RDLLDRATDICLFEKHQLKLTPNIVDIAWRNYFGTSHSFAPVQTQETMIERTLADPLE
                     L"
     gene            848..1819
                     /locus_tag="VGD38_01425"
     CDS             848..1819
                     /locus_tag="VGD38_01425"
                     /EC_number="4.2.2.n1"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEY0726697.1"
                     /translation="MRLSFGILVVLICVSSAFAQTQVRLKLADGSYMNVDDAWESPQG
                     VWYRRGGLSNVLPKEKVKKIERLEPEAPQAPQATQAEAALAKPSNNDDDHFDPVEVAT
                     AAPPAKKRVYESPAWIFLKGGARVETESATEEPGGVWYKRGGMSIFIDRSRIDRIELE
                     DPALASAGPAKKGRGWSTGRPGLDNLILQNGSRYNVDPYLIFLVMEQESHFNTGAVSP
                     KGARGLMQLMPGTAARFGVRRVHDPAQNISGGTRYLRELLNRFNNRVDLVLASYNAGE
                     GAVAKFGQRVPPYRETRNYVKKISYRYKRTTARTKRPATEGTKSTRE"
     gene            1819..2541
                     /locus_tag="VGD38_01430"
     CDS             1819..2541
                     /locus_tag="VGD38_01430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726698.1"
                     /translation="MSRFLRAAFLILSILSVSTDAQQSAESLLTNTSVVKLVKAGFKD
                     KTIIAIITSRPNVFDLAPEQLIQLKRQGVSENIILAMLATQDATIIVNEDEQWATDEQ
                     FFRGLKRPSNNKDNSTGGANIFGSGSGSQSKSESRGGSGGSQNEGNVTGSATVRILKP
                     PTEAGGASTPKLEKTETLNNEGVIRLVEAGFSEGTIIKRIEESPVDFDLSPAKLEELH
                     KRRVTDPIIVAMRAAMGGDPKP"
     gene            2769..>3038
                     /locus_tag="VGD38_01435"
     CDS             2769..>3038
                     /locus_tag="VGD38_01435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726699.1"
                     /translation="MRPIKHAERGLTLIAGGLFNAIQSVNKYKPNPSFTPKWSDKPLL
                     KSWQKSKPTLGWPRTSESLCPNCVIEAREEILSGKKDVSVLINEKV"
BASE COUNT          750 a          874 c          844 g          570 t
ORIGIN      
        1 cggaaccgga aaaaccgccg tcgccgaacg tatcaacggc gcattggcag gcggcatctg
       61 gattccgttt gccgtcgaga tcgacggaca gatcattcgc gtcttcgact cgcactgtca
      121 cgaaccgatg ccggctgacg aaacgccgac tgaatacgat cgccgctggg tcctgattca
      181 gcgcccgctc gtcgtcgtcg gcggtgagtt gacactcgag aacgcggacc tgacgtggag
      241 tgaagcagcg aagttttacg aagcgccttt tcagatgaaa tcaaacggcg gcacgctcgt
      301 gatcgacgac tttggccgtc agcgcgtggc gccgcaggat cttttgaacc gctggatcgt
      361 gccgctggaa cggcgtgtcg actatctcgc gctgcacacg ggcaagaaga tcgaggttcc
      421 cttcgaacag ctcgtcgtct tttcgacaaa cctcgaagag aaggatctcg ccgaccaggc
      481 gttcctgcgc cgcatgggtt atcgcgcgcg cgtagagccg cccacggcgg aagcgtattc
      541 ggccatcttc agagcgcagg cgcagaaacg caaaatcgtc gtggagcagc ctgtgttgga
      601 ccacattttg acgaagtatc gcgtcgagca ccggcagatg aagggttgcg aaccgcgcga
      661 cctgttggac cgcgctaccg acatctgttt gttcgagaag caccagctga agttgacgcc
      721 aaacatcgta gacattgcgt ggcgcaacta cttcggtacg tcgcactcgt tcgcgcccgt
      781 gcaaacacag gaaacgatga tcgaacgcac gttagcagat cctttggaac tctaaggctg
      841 aatcatcatg cgactgtcat tcgggatttt agtagttctg atctgtgtga gctctgcatt
      901 cgcacagaca caggtgcgct tgaaactcgc cgacggttct tacatgaacg tcgacgacgc
      961 gtgggaatcg ccgcagggag tttggtatcg gcgcggcggt ctcagcaacg tcctgccaaa
     1021 agaaaaggtc aagaagatcg agcgtcttga gcctgaagcg cctcaagcgc ctcaagcgac
     1081 gcaagctgaa gctgcgctgg caaagccgtc gaacaacgac gacgaccatt tcgatccggt
     1141 tgaagttgcg acagcggcgc cgccggcaaa aaaacgcgtg tacgagagtc ccgcatggat
     1201 ctttctcaaa ggcggcgcgc gcgttgaaac cgaaagcgcg accgaagagc ctggcggcgt
     1261 ttggtacaag cgcggcggca tgtcgatctt tatcgatcgc agccgcatcg atcgcatcga
     1321 gctcgaagat cccgcgcttg cgagtgccgg tccagcaaag aaaggacgcg gctggagcac
     1381 cggccggccc ggcctcgata atctgatcct tcagaacgga agccggtaca acgtcgatcc
     1441 ttatttgatc ttcctcgtga tggaacagga atcacatttc aacacgggtg ctgtttcgcc
     1501 aaaaggcgca cgtggattga tgcagttgat gcccgggacc gcggcacgtt tcggcgtgcg
     1561 acgtgtacac gatccggcgc aaaacatttc gggcggtacg cgttacctgc gagagctttt
     1621 gaatcgtttc aataatcgcg tcgatctggt gttggcgagt tacaacgcag gcgagggcgc
     1681 cgtcgcgaag tttggtcaac gcgtgccgcc gtatcgcgag acgcgcaact acgttaagaa
     1741 gatcagctat cgctacaaac gcacaaccgc acgcactaag cgtccggcca cagaaggcac
     1801 aaaaagcaca agagagtaat gagccgtttt ctaagagcag cgtttctgat tctatcgatc
     1861 ctgtctgttt cgacggacgc gcaacagtct gctgagtcgt tgttgacgaa cacatctgtg
     1921 gtcaaactcg tcaaggcagg ctttaaagac aagaccatca tcgcgatcat caccagccgg
     1981 cccaacgtct tcgatctcgc tccggaacaa ctcatccagc tcaaacgtca gggcgtcagc
     2041 gaaaacatca ttctcgccat gctcgcgacg caggacgcaa cgatcatcgt caacgaagac
     2101 gagcaatggg cgactgacga acaattcttc cgcggcttga agcgcccgag caacaacaag
     2161 gacaactcaa ccggcggcgc caacattttc ggttcgggta gtggttctca atcaaagtcc
     2221 gaatcgcgcg gcggcagcgg cggcagtcaa aacgagggaa acgtcaccgg ctcggcaacg
     2281 gttcgcattc tcaagccacc gaccgaagcc ggcggcgcct ctacacctaa actcgagaag
     2341 accgagacac tgaacaacga aggcgtgatc cgtctcgtcg aagcgggctt ctccgaaggc
     2401 acgatcatca agcgaatcga agagtcgccc gtcgacttcg acctctcacc cgcaaagctt
     2461 gaagagcttc acaaacgccg cgtcaccgac cccatcatcg tcgcgatgcg tgccgcaatg
     2521 ggcggcgacc caaagcccta aaccccgccc gatcccgtag ccaaacgaca cacatctata
     2581 tctctgtagc acgtggatac ggctgccgca ccggtgctca aaagctaaac atagaaatag
     2641 ttgaacttag cttcacttag ggtgacggca cagtcattgc caatgaaagg acacggtctt
     2701 ggcgaggctg tagtctgccg agaaccagca ataattcaca tcaactgagg agactggacg
     2761 gacaaacgat gcgacctatc aagcacgctg aaagaggatt gaccctgatc gcgggaggcc
     2821 ttttcaacgc aatccaatcg gtaaacaagt acaagcccaa tccttctttt accccaaaat
     2881 ggtcggacaa accgctgctg aaatcgtggc aaaagagcaa gccgactctc ggctggccgc
     2941 gcacctctga gtcgctttgt cccaactgcg tgattgaagc acgtgaagag atcctgagcg
     3001 gcaaaaaaga cgtcagcgtt ctgatcaatg agaaagtc
//
LOCUS       DASWTX010000087         2308 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_87470, whole genome shotgun sequence.
ACCESSION   DASWTX010000087 DASWTX010000000
VERSION     DASWTX010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2308
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87470"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..760
                     /locus_tag="VGD38_01440"
     CDS             <1..760
                     /locus_tag="VGD38_01440"
                     /inference="COORDINATES: protein motif:HMM:NF024946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HEY0726700.1"
                     /translation="LLIYSRDKSKGPDGEVLGTGRNAVVMDMNTIAWVGKKKMLGAKF
                     SMTATVPVARNSLDSDVTGPVSGGGGFADSYYQPFILGWNESRFAVRAVYGFLAPTGR
                     FKAGANDNVGSGYWTHAFSSGQTFYLTKNKATSISAFQMYEVHTTQKHTSIQPGDTLD
                     LDYSVMHSLSLGSDKRVQLGLVGYNARQTTDKSGPGITPAQAKAHYHVNALGFGANVT
                     LSAKANVGFKYFQEFSNRSTFEGNSIQFSGSIKF"
     gene            763..2181
                     /locus_tag="VGD38_01445"
     CDS             763..2181
                     /locus_tag="VGD38_01445"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY0726701.1"
                     /translation="MLDVLVIGGGPAGVVAAMRAGDLGAKTALLTEGEFGGMAATDGP
                     VPVRTLAHAARLIRDARQLGRYGIRVGEPVLDYSQLLERVREVVEDVRAHSMFRAQIG
                     SAGVQVHENAGVTRFVDPHTIVSESGLTLRADKIILCTGGTSRKLSVPGAELTATHSD
                     AWSLTSVPDSILVIGGGATGAQVASVFNAFGTKIQLFHKGPRILETEDEDVSAAVAAA
                     FREADMVVREDFGNIESFEKTPAGIRMRFSKNGSRESVESTLAVIAIGWVANTAGLEL
                     SQAAVNTNARGFIAVDEFLRTSAAHIFAAGDVTGRLMLVPQAIQDGFVAATNAVKGPA
                     MTLLDQPAPIGSFTDPEYAQVGLTETKAREKHDIVTARVDFKSTTRTIIDGRTAGFCK
                     LIADRSTRKVLGCHVVGERAVEITQLAAVAMAGNMCVDDLAQVPLSFPTYAGVLGRVA
                     AVATRRLNLNLDWQGNSAEGEG"
BASE COUNT          505 a          610 c          684 g          509 t
ORIGIN      
        1 acttctgatc tactcgcgcg ataaatcgaa ggggcctgac ggtgaagtgt tggggacggg
       61 acgcaacgcc gtggtcatgg acatgaacac gatcgcgtgg gtcggcaaga agaagatgct
      121 gggcgcaaag ttttcaatga ccgctacagt gccggtggcc aggaactcgc tggactccga
      181 cgtcacaggt ccagtcagcg gaggcggcgg gttcgcggat tcttattatc aaccattcat
      241 tttgggttgg aatgaatcgc gtttcgccgt ccgcgccgtc tacggttttc tcgcacccac
      301 cggacgattc aaggccggtg cgaacgacaa tgtcggatcc ggctactgga cgcacgcgtt
      361 ctcctcggga cagacattct atctcaccaa aaacaaggca acttcgattt cggcatttca
      421 aatgtacgaa gtgcacacga cacagaagca tacctccatc cagccaggcg atactctcga
      481 tcttgattat tcggtaatgc attcgctctc gttgggaagc gacaagcgcg tgcagctggg
      541 actggtggga tataacgcgc ggcaaactac cgacaagtcc ggtccgggaa tcacgccggc
      601 acaggcaaag gcgcactacc atgtgaacgc gctgggcttt ggcgccaacg tgacactgtc
      661 agccaaagcg aatgttggct ttaagtattt ccaggagttt tctaatcgct ccacctttga
      721 gggaaattca atccagtttt cgggatcgat caaattctga atatgttgga cgtgcttgtt
      781 atcggagggg gccccgccgg cgtagttgct gcgatgcgcg caggcgatct gggtgctaag
      841 accgccctgc tcaccgaggg tgaatttggc ggaatggcgg cgaccgatgg tccagtgccg
      901 gtgcggaccc tggctcatgc tgcgcgtttg attcgcgatg cgcggcaact tggccgctac
      961 gggattcgag taggcgaacc agtcctggat tactcgcaac tgctcgagcg agtcagggaa
     1021 gtagtcgagg acgttcgcgc ccattctatg tttcgggcac agattggttc tgccggagtt
     1081 caggttcatg agaacgccgg tgtgactcgg ttcgtggatc cgcacaccat cgtgtctgag
     1141 agcgggctga ctctgcgagc cgacaagatt atcctttgca ccggcgggac tagccgcaaa
     1201 ctctcggttc ccggagcgga attgacggcg actcatagcg atgcctggag cctcacgtct
     1261 gtaccggatt cgatcctcgt gattggcggt ggcgccacgg gagcgcaagt ggcgtccgtg
     1321 ttcaatgcgt tcggtacgaa aattcagctc ttccacaaag ggccacgaat tctggagact
     1381 gaagacgaag atgtttcggc ggcggtcgcc gcggcatttc gcgaggccga catggtggtg
     1441 cgagaagatt tcggaaacat cgagtcgttt gagaaaacgc ccgctggtat ccggatgcgt
     1501 ttttcgaaaa acggaagccg tgaatctgtc gaaagtacgc tggcagtaat agctatcggc
     1561 tgggtcgcga acactgccgg actggaacta tcgcaagccg ccgtaaatac aaatgcgcgg
     1621 ggattcattg ccgtggatga atttctgcgc acgagtgctg cgcacatatt cgcagcggga
     1681 gatgttaccg gccgtctgat gctggttccg caggcgattc aggatggatt cgtggccgcc
     1741 acaaatgctg tgaaaggccc agcgatgaca ctgttggatc agcctgcccc gattggcagt
     1801 tttaccgacc ctgaatacgc gcaggttggc ctcacagaaa ctaaagccag agaaaaacat
     1861 gacatcgtta ccgcacgcgt cgatttcaaa tccaccacgc gcacgatcat cgatggccga
     1921 acggcgggtt tctgcaagtt gatcgcggat cggtctacgc gaaaggttct cggttgccac
     1981 gtggttggtg aacgggctgt ggaaattact caacttgccg ctgttgccat ggcaggcaac
     2041 atgtgtgtgg atgatctggc ccaagtaccg ctttcgttcc caacatacgc aggcgtcctt
     2101 ggccgcgtcg ccgccgtcgc cacccgccgg cttaatctca atttagattg gcaggggaac
     2161 agcgcggaag gagagggtta aataaggacc gattcgcttt ccgagcgatc ccgaatgatt
     2221 ccaactcgtt acctgccgtc aaccttaccg tcacgttaat tgttcgtctt ataagttatg
     2281 aaagcgcccg aaatgtgact ttaccggc
//
LOCUS       DASWTX010000088         1853 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_195831, whole genome shotgun sequence.
ACCESSION   DASWTX010000088 DASWTX010000000
VERSION     DASWTX010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1853
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195831"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..451
                     /locus_tag="VGD38_01450"
     CDS             <1..451
                     /locus_tag="VGD38_01450"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY0726702.1"
                     /translation="DGVVPDVVTLAKALGSGVPVGACLVSDEIASHIKENDLGTTFGG
                     GMMAMAAVTATLEAIETDNMLANVKTVEAYLREQLSEMDQVVAVHGRGFLLGVEFADK
                     AAPVHQKLLDHKIITGTSSNPNVLRLLPPLCLKLAEVDLFVSALGKG"
     gene            456..1427
                     /locus_tag="VGD38_01455"
     CDS             456..1427
                     /locus_tag="VGD38_01455"
                     /EC_number="2.1.3.9"
                     /inference="COORDINATES: protein motif:HMM:NF003384.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_function: GO:0043857 - N-acetylornithine
                     carbamoyltransferase activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylornithine carbamoyltransferase"
                     /protein_id="HEY0726703.1"
                     /translation="MNSFLSTLDCDLDQLIDSALRFKHSDSHAKSLSGKSVALVFFNP
                     SLRTRTSMQVGIYELGGNAVVLEPGGTSWTLEHREGAVMDGDKTEHVAEFVRVLERYC
                     VAIGVRTFAALKDWQEERTDPVLNAFAKYASVPIINLESAMHHPCQSAADMMTIREKL
                     GAGRKRVVLTWAWHPKALPMAVPNSFALAAAQMGHDLVIAHPPGYELDEELIETIRGL
                     GSVEITNDVDAAFEGAEVIYAKSWGGKQFYGETDRDLAHRAQFRDQWIVNEDKMRRTN
                     KAIFMHCLPVRRNVIVTDGVIDSAASVVIDEAENRLHVQKAVMAELL"
     gene            1424..>1853
                     /gene="argB"
                     /locus_tag="VGD38_01460"
     CDS             1424..>1853
                     /gene="argB"
                     /locus_tag="VGD38_01460"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: protein motif:HMM:NF012899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEY0726704.1"
                     /translation="MNVTIDNQTRLDLLREALPYIQRFKGQTFVVKLSGKVTERHENL
                     TSLAEELALLHQVGIRICVVHGGGKQLSELASKLGVEQTIIEGRRVTDDATLEMAKMI
                     FAGKINTDILAALRQRGIEAVGLSGVDGNIVHATKRPPKEI"
BASE COUNT          410 a          522 c          559 g          362 t
ORIGIN      
        1 tgacggtgtc gtgccggatg tcgtcacact tgcgaaggcg cttggtagtg gcgttcccgt
       61 cggtgcgtgt ctcgttagtg acgagatcgc gtcgcacatc aaggagaacg atctcggtac
      121 gacgtttggc ggcggcatga tggcgatggc ggctgtgacc gcgacgctcg aagcgatcga
      181 gaccgacaac atgctcgcga acgtgaaaac ggttgaagcg tacttgcgcg aacagttaag
      241 cgaaatggac caggtcgtcg cagttcacgg ccgcggcttc ttgctcggcg tcgaattcgc
      301 agacaaagcc gcaccggttc atcagaaact gctggaccac aaaatcatca ctggcacgtc
      361 gagcaacccg aacgtgctgc gcttgttgcc gccgttgtgc ctgaaactcg cggaggttga
      421 cctttttgtg agtgctttgg gaaagggata agacgatgaa tagcttcctg agcacccttg
      481 attgcgatct ggatcaactg attgactccg ctttgcgttt caagcatagc gacagtcacg
      541 caaaatccct ttctggtaag tccgtggcac tggtcttctt caaccccagc ctgcgcacgc
      601 gcacgtcgat gcaggtgggc atttacgagc tcggcggtaa tgcagtcgtg ctcgaaccgg
      661 gcggaacgag ctggacgctc gaacaccgcg agggcgcggt gatggacggc gacaaaaccg
      721 aacacgtcgc ggagtttgtg cgcgtgctcg aacgctactg cgtcgcgatc ggcgtgcgca
      781 cgtttgccgc gttgaaagac tggcaggaag agcgcaccga tccggtgctc aacgcgttcg
      841 cgaagtacgc ttcagtgccg atcatcaatc tcgaatccgc gatgcatcat ccgtgtcagt
      901 ccgcggccga catgatgacg attcgcgaaa aactcggcgc cggtcgcaag cgtgtggtgc
      961 ttacctgggc ctggcatcca aaagcgttgc cgatggccgt gccgaacagt ttcgccctgg
     1021 cggccgcaca gatgggtcac gatctcgtca tcgcgcatcc gccgggttac gagctcgacg
     1081 aggaattgat cgagaccatc cgcgggctcg gcagtgttga gatcacgaac gatgtcgacg
     1141 cggcttttga gggcgcggaa gtgatctacg cgaagagctg gggtgggaaa cagttttatg
     1201 gtgaaacaga tcgcgatcta gcgcatcggg cgcagtttag agatcagtgg atcgtgaatg
     1261 aagacaaaat gcgccgaacc aataaagcga tcttcatgca ctgtttgccg gtgcggcgca
     1321 acgtgatcgt cactgatggc gtgattgatt ctgcggcgtc tgttgttata gacgaagcgg
     1381 aaaaccggct gcacgttcag aaagcagtaa tggccgaact cctatgaacg taacgatcga
     1441 caaccaaaca cgcctcgatc ttctgcgtga agcgctgccg tacatccagc gcttcaaagg
     1501 ccagacgttt gttgtcaaac tctccggcaa agtcaccgaa cgtcacgaaa acctgacgtc
     1561 gctcgccgaa gagctcgcgc tgctccacca ggtcggtatt cgcatctgcg tcgttcacgg
     1621 cggcggcaaa caactcagcg agctcgcgtc aaagctcggc gtcgaacaga cgatcatcga
     1681 gggccgccgc gtcaccgacg acgccacgct cgaaatggcg aagatgatct tcgctggcaa
     1741 gatcaacacc gacatcctcg cggcgctgcg ccagcgcggc atcgaagccg ttggtctgtc
     1801 cggcgtcgac ggcaacatcg tgcacgccac aaagcggccg cccaaagaaa tac
//
LOCUS       DASWTX010000089         2250 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_390959, whole genome shotgun sequence.
ACCESSION   DASWTX010000089 DASWTX010000000
VERSION     DASWTX010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2250
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_390959"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            419..997
                     /locus_tag="VGD38_01465"
     CDS             419..997
                     /locus_tag="VGD38_01465"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEY0726705.1"
                     /translation="MTVFYLVRHGACEGLGKTLWGRTAGVCLNEEGKAQALRVAKRFS
                     SIKLDAVYSSPLERARETADVIARAARLEVKPSSAFNEIDFGDWSGKSFDTLAHDDRW
                     HRFNTHRSVTSIPGGETFPAVRARVNAELERLSAQHKHSRVVIVSHADVIKAALGYGT
                     DMPIDVLQRYEILPGSVTIVIADALDKTGGGN"
     gene            1001..2116
                     /locus_tag="VGD38_01470"
     CDS             1001..2116
                     /locus_tag="VGD38_01470"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024914.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0726706.1"
                     /translation="MKIVFFGLTISSSWGNGHATLLRGLFKALTARGHTIVFFERDVP
                     YYAAHRDLVESPHIQLHLYREWNEIISTARKELSEADAAVVTSYCPDGIDATELVVSS
                     NVQLRVFYDLDTPVTLEALQNGEQLTYIGPRQLVDFDLVLSYTGGAALTALEDQLGAR
                     RVVPLFGSVDPEIHHPACSLSGYHADLSYLGTYAADRQQALDELFIQVARHMPQKRFV
                     LGGSKYPIDFPWRQNIWYVQHVAPSAHAAFFCSSPLTLNITRGAMARMGYCPSGRLFE
                     AAACGVAIVSDEFAGLDEFFQPGNEIIVARTTGDVIAAMQLSPDELAQIARAGRERVL
                     NSHTAAHRAAELERIFEESLNIPLMDHVGSRQLAAEA"
BASE COUNT          460 a          717 c          671 g          402 t
ORIGIN      
        1 ttgggcgccg ccgtagcggg ctctggcgta tcgggcgctg ccgtatgggg ctccgccccc
       61 ggatgtgagg cggggctccg ccccgccggt aaagtagaaa aaagaagctg ggctatgccc
      121 ctggttcggc ctatggccca agatcgctca gagggcagag cccgaaccag gggcatagcc
      181 cactgttcaa atttcaattt cgacggcggg gcgaagcccc gcctcacatc cggcggcgaa
      241 gccgcggcga aagaggctca aactccccac cggcggcgaa gccgcggcgg cggtggttcc
      301 cagccgaagc ggttcaaact ccgcgccagc ggcgaagccg cggcgagggt ggttcaaact
      361 ccgggggccg ggcggctcaa ggctcatggc ggaagcggtt cagtactgag gtaagcgaat
      421 gaccgttttc tacttagtca gacacggcgc gtgcgagggc ctcggaaaaa ctttatgggg
      481 gcggacggcg ggggtttgtc tgaacgagga aggaaaggcg caggcgctgc gagtcgcgaa
      541 gcgtttcagc agcatcaagc tcgacgcagt ctacagcagc ccgctcgagc gcgcgcgcga
      601 aaccgccgac gtgatcgcac gtgccgccag gctcgaagta aaaccgagtt ccgctttcaa
      661 cgaaattgat tttggcgact ggagcggaaa gtcgttcgac acgttagcgc acgacgatcg
      721 gtggcatcgc ttcaacacac accgaagcgt cacgagcatt ccgggaggcg agacatttcc
      781 cgccgtgcgc gcgcgtgtga acgccgaact cgaacgacta tcagcacaac acaagcacag
      841 ccgcgtcgtg atcgtctcgc acgcagacgt gatcaaggcc gcgctgggtt acggcaccga
      901 catgccgatc gacgtccttc agcgttacga gattttgccg ggctcagtca ccatcgtcat
      961 cgctgacgca ctcgacaaaa ccggcggcgg taattagcgt atgaagatcg ttttcttcgg
     1021 tctaacgatc agctcatcgt ggggcaacgg ccacgcaaca ctgctgcgcg ggctcttcaa
     1081 agcactcacc gcgcgcggtc acacgatcgt gttcttcgaa cgcgacgtgc cctactacgc
     1141 cgcccatcgc gatctcgtcg agtcgccgca catccaactc catctctatc gcgaatggaa
     1201 cgagatcatc tcgaccgcac gcaaagaact cagcgaagca gacgccgccg tcgtcacgtc
     1261 ctactgtccg gacggcatcg acgccaccga actcgtcgtc tcttcaaacg tgcaactgcg
     1321 cgtcttctac gatctcgaca cgcccgtcac actcgaagca ctccagaacg gcgaacaact
     1381 gacttacatc ggaccacgcc agctcgtcga cttcgatctc gtgcttagct acaccggcgg
     1441 cgccgcgcta acagcgctcg aagatcaact cggcgcgcgc cgtgtcgtgc cgctgttcgg
     1501 cagtgtcgat ccggaaattc atcatccggc ttgttccctt tccggctacc acgcggatct
     1561 ttcgtacctc ggaacttacg cagccgatcg ccagcaggca ctggacgagc tcttcatcca
     1621 ggtcgcgcgt cacatgccgc agaagcgctt cgtgctcggc ggctcaaaat acccgatcga
     1681 ttttccgtgg cggcaaaaca tctggtacgt gcaacacgtc gcgccttcag cacacgcggc
     1741 gtttttctgt tcctcgccct taacgctgaa catcacacgc ggcgcgatgg cgcgcatggg
     1801 ctactgcccg tcgggccgtc tgtttgaagc cgccgcgtgt ggcgtcgcga tcgtgtctga
     1861 tgaattcgcg ggtctcgacg agttcttcca acccggcaac gaaatcatcg tcgcgcgcac
     1921 aaccggcgac gtgatcgcgg ccatgcaact gtcacccgac gaactcgcgc aaatcgcgcg
     1981 cgcgggacgt gaacgagtgc tgaattcgca caccgcagcg catcgcgccg ctgagctcga
     2041 acgcattttc gaagagtcgc tgaacattcc gttgatggac cacgtgggga gcagacaatt
     2101 ggctgctgag gcatgaagta tgtggggaat tgtaccggcg gcgggcgttg gtagccgcat
     2161 tcaaccactg gcgttctcaa aagagctgtt gcccgtcggc agccgcgctg aagaaggcaa
     2221 cgaacgcccg cgcgccgtca gcgagtatct
//
LOCUS       DASWTX010000090         4556 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_347993, whole genome shotgun sequence.
ACCESSION   DASWTX010000090 DASWTX010000000
VERSION     DASWTX010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4556
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347993"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..943)
                     /locus_tag="VGD38_01475"
     CDS             complement(<1..943)
                     /locus_tag="VGD38_01475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726707.1"
                     /translation="MLYLNPPFFVIEGVSVFPDHEDPLQFYYLPMMPRLTQLPDSQTG
                     QNVPQISIIKFRGTAGNGGFLNFDCNIGVDQSTLDDVAQQLKQKMRLRDTPRLGPVPL
                     IDGRVRLLLFGASTPDTTQPAGAGAGAGTSGGGGTVATATTTTVTTSPIGTPTGPKFV
                     TKIDQAAKPALFGDNQAAFSVALDQAGVTVLEEAMKGELSPIGIVYSLDYLALRPAYN
                     VSVSVDWDRVQKHLNEKFSVNTLFFSSDIETTVDKLIEDRSIQINVDTFVPEDGDETG
                     VLGRRDRAVEDIREMITSSFFTASLDPVKEQKDGADTA"
     gene            complement(954..3146)
                     /locus_tag="VGD38_01480"
     CDS             complement(954..3146)
                     /locus_tag="VGD38_01480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726708.1"
                     /translation="MLMWDKPLTIAGVTVYGDDRSSNIFYVLPHAPRFRLDDNGLPVF
                     KFLKYREAIDRPNPANPNKKGGGFCIFDVEFVVPDDVLEKVKAELQEKLDERNKNANP
                     KPRVEIGQLSYTRGAAKLQMLDSGGGLVEKIQNPGAPSLYGHMITPFTVELSPGGATL
                     AEEALQDKGGIIQVIYDLFTPVKLPPVTVTVWFNAEKFMHFHQEVHIDWNFWGDDSYR
                     ESIQQSWRTTEVGGVELDPGTVTDQKVLNAVRDWGWQSLDDAVKRMVLSDIPDVSADD
                     RKVPEGMEHVWRDQSVRKVASFRRTYKEGQVMEWNPSPRGTLPNITSLKDKEGKPLKW
                     SDFAKLVDLDDPFFRQLNVSVTANADFQAIPIHSVDVHLDYHQGDKQRVDDFHLTNSN
                     DVGKFATFIENNQWKYKYRYQVNYKGSDRTYKSPEVETDSKFLTINVGDTGFLEIRAQ
                     AGDLNFEQVDRVQVVLQYEDTSNNVPLIEDSFTLDKAHTEHKFSKLIFAPVKNAYKYR
                     VKYFMKDGKEYSVDWQEARSMQLFINDPFSANRSIGLRGIGDFQSDIATIFVDLNYVD
                     EKNKYSQKTSVALNKTTQFLDWVFPVIDESSGKITFSGTIQFQDGKIEEIKETESTKS
                     TILVGKPRDENEFLSIQVIHDLLDFSRIKLAKVALHYVDSANGIDARKDLVIKKTDTS
                     IPPWSVRIQDRTKKTYEWQATYFMSDGSQKKTTLETTGETSLVLEVPV"
     gene            complement(3130..4407)
                     /locus_tag="VGD38_01485"
     CDS             complement(3130..4407)
                     /locus_tag="VGD38_01485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726709.1"
                     /translation="MTDLPNGFELRGVYFYQSKDDPQTFCYLPGDPAPERSPSGQPMV
                     TFLVTDQAGMLQLGTRWEVESTLLESLRNEIADGFPDLDPALIRFSPAPLSVESVSLM
                     LSSDGREEELQTVQSSGFPPYSAIFNVTLTPEQKAQVASALNGRTGLLKVIYRASLAV
                     PVSAEESNTADAQTDVTEAGRESRREARFNLSSRITTMSSVPVEGSTDVGSWHTGGVD
                     SANITVAPTVSTSSDAGRPAAAMIGIGFDLKDAPVALVQVTWDEQATISGPVFGPVTV
                     KGHTDKPISINTFYTNGAPSYGTTLPAPTDNELKLTPSDLGLAVITVDATALRKAGAT
                     QAQLQINYKPTSDGFADEHLIRLRFGDWIDTWYVVTRSASLNGVLEIESTHTNADGTV
                     IKHPTLTTTNTEIFLSADDSLNASGGNTHVNVG"
BASE COUNT          947 a         1228 c         1270 g         1111 t
ORIGIN      
        1 atgccgtatc agcgccgtcc ttctgttcct tgaccggatc aaggctggcc gtaaagaaag
       61 agctggtgat catttcacgg atgtcttcga cggcccgatc gcggcggccc agcacgccgg
      121 tttcatcgcc gtcttcaggc acaaaagtgt cgacgttgat ttgaatcgat ctgtcttcaa
      181 tcaacttgtc gacggtcgtt tcaatgtctg aagaaaagaa gagcgtattc acactgaact
      241 tttcgttcag gtgcttctga acgcggtccc agtcaacact gacgctgacg ttgtaagcgg
      301 gccgtaacgc aagatagtcg agcgaataga cgatgccgat cggagagagt tcccctttca
      361 tcgcttcctc taaaacggtc acgcccgcct ggtccaaagc cacggagaaa gcggcctggt
      421 tgtccccgaa gagcgcgggc tttgcggcct ggtctatctt cgtcacgaac ttcgggcctg
      481 tcggggtgcc gatcggtgaa gtagtgacag tggtggtcgt tgccgtcgcg accgtaccgc
      541 caccgccgga cgtgcccgcg ccggcgccag caccggcagg ctgggttgta tccggagtcg
      601 acgctccgaa gagcagcaat ctcacgcggc cgtcgatcag cggcactgga ccaagacgcg
      661 gagtgtcgcg caagcgcatc ttttgtttca gttgttgggc cacgtcgtcc agcgtcgact
      721 ggtccacgcc gatgttgcag tcaaagttga ggaagccgcc gttgccggcg gtccctcgaa
      781 acttgatgat ggaaatctgc ggcacgttct gcccggtctg tgagtcgggc aactgcgtca
      841 gccgcggcat catcggcagg tagtaaaact gcaacggatc ttcgtggtcc gggaacacgg
      901 acacaccttc gatcacaaag aacggtggat tcaggtaaag catcggagcc tccttaaact
      961 ggcacttcca ggaccaatga agtttcaccg gtggtttcca gagtcgtctt cttctgtgaa
     1021 ccatccgaca tgaagtaagt ggcttgccac tcgtaggtct tcttggtcct atcctgaatc
     1081 cggacgctcc atggtggtat agaagtgtcc gtcttcttga ttaccaggtc cttgcgagcg
     1141 tcgatgccgt tggcgctgtc cacgtaatgc aaagcaactt tggccagctt gatgcggctg
     1201 aaatcgagca ggtcgtgaat cacctgaatg gatagaaact cgttttcgtc gcgcggcttg
     1261 ccgacgagga tcgtgctctt ggtcgactcc gtttccttga tctcctcgat tttcccgtcc
     1321 tgaaactgga tggttcccga gaaagtgatt tttccggagc tctcgtcgat gacggggaaa
     1381 acccaatcga gaaattgcgt ggtcttgtta agcgccacgg aggttttctg gctgtacttg
     1441 ttcttctcgt cgacgtagtt cagatcgaca aatatcgtgg cgatgtcgct ctggaaatcg
     1501 ccgatgccac gcagcccaat gcttcgattc gcactgaacg gatcgttgat gaaaagctgc
     1561 atcgagcgag cctcttgcca atcgaccgag tactccttgc cgtctttcat gaagtacttg
     1621 acgcgatact tgtaagcgtt tttgaccggg gcaaagatca gcttgctgaa cttgtgttcg
     1681 gtgtgagctt tgtcgagagt aaatgagtct tcaatcagcg gcacgttgtt cgacgtgtcc
     1741 tcatactgaa gcactacctg cacgcgatcg acctgttcga aattcaggtc gccggcctgc
     1801 gcgcggatct cgaggaagcc ggtatcgccg acgttgatcg tcaggaactt cgaatccgtt
     1861 tcgacttctg gtgacttgta cgtgcggtcc gaacccttgt aattcacctg atagcgatac
     1921 ttgtacttcc actggttgtt ttcgatgaac gtggcaaact tgccgacgtc gttcgagttg
     1981 gtcaggtgaa aatcatcaac cctctgctta tcgccctggt gatagtcgag atgaacgtcg
     2041 acactgtgaa tgggaatggc ctgaaagtct gcgttcgcgg ttacgctgac gttcagttgc
     2101 ctgaagaacg gatcgtccag gtcgacgagc ttggcaaagt cggaccactt gagtggcttg
     2161 ccttccttgt ctttgaggga agtaatgttc ggcagggtgc cgcgaggtga agggttccat
     2221 tccatgacct gcccttcttt atacgtgcgg cggaaactcg cgacctttcg caccgactga
     2281 tcgcgccaaa cgtgttccat gccctccggg actttgcgat cgtcggcaga cacgtcgggt
     2341 atatcactca gcaccatgcg cttgaccgca tcgtccaacg attgccatcc ccaatcgcga
     2401 acggcgttga gcactttttg atcggttacg gtgccgggat cgagttcgac gccgcccact
     2461 tcagtagtgc gccatgactg ttggattgat tcccgatagc tgtcgtctcc ccagaagttc
     2521 cagtcaatat ggacttcctg atggaagtgc atgaactttt ctgcgttgaa ccaaacggta
     2581 acggtgactg gcgggagttt taccggagta aagagatcgt aaatgacctg gattatgccg
     2641 cctttatcct gaagcgcttc ctcggccaga gtcgcgccgc ccggcgacaa ttcaaccgta
     2701 aacggagtga tcatgtggcc gtacaacgac ggcgcgccgg gattctgaat cttctcgacg
     2761 agccctccgc cgctgtccag catctgcaat ttggccgcgc ctctcgtata gctgagttgg
     2821 ccgatctcaa ctctcggctt aggattcgcg ttcttattgc gctcgtcgag tttctcctgt
     2881 aattcggctt tgactttctc cagcacatcg tcgggcacta cgaactccac gtcgaagatg
     2941 caaaagccgc cgcccttctt attcggattg gccgggttcg gacgatcgat agcttctctg
     3001 tatttcagga acttaaaaac cggcagcccg ttgtcgtcca ggcgaaaacg gggagcatgg
     3061 ggcaatacat agaagatgtt ggacgagcga tcgtccccat aaactgtgac acctgcaatc
     3121 gttagtggtt tatcccacat taacatgtgt gttacctcct gaggcgttca gcgaatcatc
     3181 cgctgaaaga aagatttcag tattggtggt agtgagggtt gggtgcttga tgaccgtgcc
     3241 atctgcattc gtgtgcgtac tttcaatctc gagcacgccg ttaagacttg cgctccgggt
     3301 gacgacgtac cacgtatcta tccagtcgcc gaaccggaga cgaatcagat gttcatcagc
     3361 aaagccgtca ctcgttggct tgtagttaat ttgtagctga gcttgcgttg ctccggcttt
     3421 gcgcaatgca gttgcatcga cggtgatcac cgccaggcct aaatcggacg gagtcagctt
     3481 tagttcgtta tcggttggag cagggagggt cgtcccgtat gacggggcgc cgtttgtgta
     3541 aaaggtattg atggaaatcg gtttgtcagt gtggcctttg accgtcactg gaccaaaaac
     3601 gggaccggag atcgttgctt gttcgtccca cgtcacctgg accagcgcaa caggcgcgtc
     3661 cttcaaatcg aacccgatgc cgatcatggc cgccgcgggc ctgccggcgt cagacgaggt
     3721 cgagacggtc ggagccactg tgatgtttgc ggaatccaca ccacccgtgt gccacgagcc
     3781 gacgtcagtt gagccctcga cgggaactga gctcatcgtt gttatgcggg agctcagatt
     3841 gaaccgcgct tcacggcggc tctcgcgacc agcttcagtc acatctgtct gggcatctgc
     3901 tgtgttgctc tcttcggcac taacgggtac agccagcgat gcccggtaaa tcactttgag
     3961 cagtccggtg cggccgttca aagcagatgc gacttgagcc ttttgttcag gcgtcagggt
     4021 gacattgaag atcgccgagt acggtggaaa cccggaggat tggaccgttt gcagctcttc
     4081 ttcgcgtcca tcgctgctta gcatcaagct gacgctttcg acggaaagtg gagcaggcga
     4141 gaagcggatc agcgccggat cgagatctgg aaatccatcg gcaatttcgt ttcgcaggct
     4201 ttcaagaagt gtgctttcaa cttcccaacg cgtacccagt tgcagcattc cagcctgatc
     4261 ggtcactaaa aaagtaacca tcggctggcc cgacggactc cgctccggcg ccggatcccc
     4321 cggaagatag cagaacgtct gcgggtcgtc tttgctctgg tagaaataaa caccacgaag
     4381 ctcgaaacca tttggcagat cagtcactgc acacctcctg attgcactgc tggattgagg
     4441 accagaggtt taaatggtga ttgcaccggc gaccaagtag ttgtgttatg aaaacggtat
     4501 ttgtagaccg gatagaaagg cgacctcgcg aaccagttcc actctcgctt tgtttt
//
LOCUS       DASWTX010000091         3465 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_304650, whole genome shotgun sequence.
ACCESSION   DASWTX010000091 DASWTX010000000
VERSION     DASWTX010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3465)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3465)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3465
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304650"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..283)
                     /locus_tag="VGD38_01490"
     CDS             complement(<1..283)
                     /locus_tag="VGD38_01490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726710.1"
                     /translation="MGKVFSEVMDAIGMGGPNLVEKLDKISEQLVQVQKSLDRLTEMT
                     AEILKQLAELRDFMEKSLQIQTLVGAMTRIDGAYGSASEQLLVKADDSGP"
     gene            complement(490..1866)
                     /gene="dnaB"
                     /locus_tag="VGD38_01495"
     CDS             complement(490..1866)
                     /gene="dnaB"
                     /locus_tag="VGD38_01495"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:NF004384.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEY0726711.1"
                     /translation="MATPDLTRDPAFERALPNSSEAERAILGAVLLDNGLISQAIEQL
                     RPEDFYVPSHRRIFVGMIALFERGAEINPILIGEELKKENSLESVGGISFITNLTYGL
                     PHSTNILHYAKVVRGKSMLRQLIKSANKITQEALAEEDEPEIILDHAEHAIFQLADER
                     IRQGFMHVKPIAESLLEKVQEMEGRAAVLTGLTTGFADLDKMTSGLQNSDLIILAARP
                     SMGKTSFALMLAENAAIHAGAVVGVFSLEMSKESLVMRMLCSQGNIDAQRFRNGFLSR
                     LEWAQIAKSLGILADTKIFLDDTPGLSVLEMRAKARRLMAEQKKLDLIIVDYLQLMSG
                     SSKRTESRHQEVSQISRELKGLAKELNVPLLALSQLSRAPESRSDHRPQLADLRESGA
                     LEQDADLVAFIFREEQYKTPEERDAMPEDQKNIAEIIIAKQRNGPTGTVDLRFTPSSM
                     RFDNLYRE"
     gene            complement(1994..2539)
                     /gene="rplI"
                     /locus_tag="VGD38_01500"
     CDS             complement(1994..2539)
                     /gene="rplI"
                     /locus_tag="VGD38_01500"
                     /inference="COORDINATES: protein motif:HMM:TIGR00158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEY0726712.1"
                     /translation="MAHTKVLLREDVDDLGARGEIVRVRAGYARNYLLPRNLAVEATA
                     GNVKGIEQERAALLKKEAKERATAEAQSQQMGALVLEFKRKAGEQGALYGSVTSMDVA
                     EALHQRGYEIDRHRIHLREPLKRVGDYTVPVRLHREVTIDLQVKVVPEGEVIVGHLSP
                     EQEAELAKQQAAANEEEAAAE"
     gene            complement(2552..2761)
                     /gene="rpsR"
                     /locus_tag="VGD38_01505"
     CDS             complement(2552..2761)
                     /gene="rpsR"
                     /locus_tag="VGD38_01505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005705387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEY0726713.1"
                     /translation="MHRRRVCRFCIDKVDLIDFKDVRLLLNYLPERGKILPRRISGNC
                     ATHQRMLAEAIKRARNIALLPYTTD"
     gene            complement(2900..3322)
                     /gene="rpsF"
                     /locus_tag="VGD38_01510"
     CDS             complement(2900..3322)
                     /gene="rpsF"
                     /locus_tag="VGD38_01510"
                     /inference="COORDINATES: protein motif:HMM:TIGR00166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEY0726714.1"
                     /translation="MSNNKRQYEVVFIVDPTADEEVPRLSEAFAQIVTDQGGTVTRNE
                     VMGKRQLAYEILHHKDGTFVLLEIEGSGREIAELERRMRVNDRVLRYITVRVDEDRRR
                     AEKLKERRARKAAKRPSHGQGGSSRRGPAMEFAEAAGE"
BASE COUNT          650 a         1045 c          956 g          814 t
ORIGIN      
        1 caggacccga gtcgtctgcc ttcaccagaa gctgctcgga agcgctgcca tacgcgccgt
       61 cgatccgcgt catggcgccg accagcgtct ggatttgcag actcttctcc atgaagtctc
      121 tgagctcggc gagttgcttc aaaatctcgg ccgtcatctc agtcagacga tcgagagatt
      181 tctgcacctg gaccagttgc tcgctgatct tgtcgagctt ctcaaccaaa ttcggaccgc
      241 ccattccgat ggcgtccatc acctcgctga aaacttttcc catcgcggcg ctgaccaaac
      301 caccggccgc tttttcacca acccacttgg caaccgcacc tgccgcggcc caggttacgg
      361 ggtcaagttg gaggtttcct tgtattgttg tttggggttc aagctcttga tttgggggga
      421 cagtcgtatt cgtatcttcc atgggggatc tcctgtttac gttttttggg cgaactgaga
      481 gaaatggatt tactcgcgat agaggttgtc gaagcgcatg ctggaggggg tgaagcggag
      541 atcaacagtt ccggtagggc cattgcgttg cttggcgatg atgatctcgg cgatgttttt
      601 ttgatcttcg ggcattgcgt cgcgttcttc gggtgtcttg tactgctcct cgcgaaagat
      661 gaatgctacc agatccgcgt cctgttccaa cgcgcccgac tcgcgcaggt ctgcgagttg
      721 cggacgatga tccgaacgcg attccggcgc gcgcgaaagc tgcgacaacg ccagcagcgg
      781 cacgttcaac tccttcgcca agcctttcaa ctcgcgcgag atctgcgaaa cttcctggtg
      841 ccgcgactcg gtccgttttg acgaacccga catcaactgc aggtagtcca cgatgatcag
      901 atcgagcttc ttctgctcgg ccatgagccg gcgcgccttc gcacgcatct ccaacacact
      961 caagcccggt gtgtcgtcga gaaagatttt ggtgtccgca agaatgccga gtgacttcgc
     1021 aatctgcgcc cactcgagcc gcgacaaaaa tccattccga aaacgctgtg catcgatatt
     1081 gccttgcgag caaagcatgc gcatgaccag cgactctttc gacatttcca gcgagaacac
     1141 acctacaact gcgcccgcgt gaatcgccgc gttctcggcg agcatcaacg cgaaactggt
     1201 ttttcccatc gacgggcgcg ccgcgagaat gatcaggtcg gagttttgta gaccggaagt
     1261 catcttgtcg agatccgcaa agccggtcgt gagcccggtg agcaccgcgg cgcggccttc
     1321 catctcctga actttttcga gcagcgactc cgcgatcggc ttcacgtgca tgaagccctg
     1381 gcgaatgcgt tcgtcggcga gttgaaagat cgcgtgctcg gcgtggtcca gaatgatctc
     1441 gggctcgtct tcttcggcga gtgcttcctg cgtgatcttg tttgcgctct tgatgagttg
     1501 gcgcagcatc gacttgccgc gcacgacttt cgcgtagtgc aggatgttgg tcgagtgcgg
     1561 cagaccataa gtgaggttgg tgatgaaact gatgccgccg acggattcga gtgagttctc
     1621 ttttttgagc tcttcgccga tcagaatcgg gttgatctcc gcgccgcgtt cgaagagtgc
     1681 gatcatgccg acgaagatgc ggcggtgcga aggaacgtag aagtcttcgg ggcggagttg
     1741 ttcgattgcc tggctgatca ggccgttgtc gagcagaacc gcgccgagaa tcgcgcgctc
     1801 ggcttcggaa ctgttgggta acgcacgttc gaaagcaggg tcgcgggtta agtcaggagt
     1861 agccatcaac ggattatggt gtgccgattt tcgcttgaaa agttgagcgc tggactggac
     1921 gaaaaaacag cgccgtaggt gaacacgcct acggcgccag actatacaac agcctcggtg
     1981 ttttatcgta cttttactcg gcggctgctt cttcttcgtt agcggcagct tgctgcttcg
     2041 ccagctccgc ttcctgctca ggcgacagat gcccaacgat cacttcgcct tcaggaacaa
     2101 ccttcacttg caggtcgatc gtgacttcgc gatgcaaccg caccggcacc gtgtaatcac
     2161 ccacacgctt caacggctcg cgcaggtgaa tgcgatgacg atcgatttca taaccacgct
     2221 ggtgcaacgc ttccgcgacg tccatcgacg tgaccgaacc atacaacgcg ccctgctcgc
     2281 cggcttttcg tttgaactcc agcacgagcg cacccatctg ctgcgactgc gcttcggctg
     2341 tcgcacgctc ttttgcttcc ttctttaaca gcgccgcgcg ttcctgctcg attcccttca
     2401 cgttgcctgc agtcgcttcg acagcgagat tgcgcggcag caagtagttg cgggcgtaac
     2461 ccgcacggac cctgacaatc tcgccgcgcg cgccgagatc gtccacgtct tcacgtaaaa
     2521 gaactttcgt gtgtgccatc ttccttctcc cttagtcggt ggtgtacggc agcagcgcga
     2581 tgttacgcgc gcgcttgatc gcttccgcca acatgcgttg atgtgtcgca cagttaccgg
     2641 agatgcgccg cggcaggatc ttcccgcgct caggcaggta gttgagcaag agcctgacgt
     2701 ctttgaaatc gatcaggtcc actttatcga tgcaaaagcg gcaaacgcgc cgccggtgca
     2761 tgcggcgtcc ctggccacgc ccgccgccca ttggccgtcg atcctgatcg tcgtcgttat
     2821 cgtaaccacc accaccgccg cgctggcggt cttcataatt ggttgacata gctattcctc
     2881 ttaaacgtag gtcaaaaact tattcgccgg cggcttcagc aaattccatc gctggaccac
     2941 gacgcgacga tccgccctgt ccgtgtgacg gacgcttggc ggccttgcgg gcacggcgct
     3001 ctttcagctt ctcagcacga cggcgatctt cgtcaacgcg caccgtgatg tagcgcagca
     3061 cgcgatcgtt gacgcgcata cggcgctcga gctcggcgat ctcacggccg gagccttcga
     3121 tctccaacaa cacgaacgtg ccgtctttgt ggtgcagaat ctcgtaagcc aactggcgct
     3181 tgcccatgac ttcgttcctg gtcacggtgc cgccctggtc cgtgacgatc tgcgcgaaag
     3241 cctcgctcag tctcggcact tcctcgtcgg ctgtcgggtc gacgataaag accacttcgt
     3301 actgtctctt gttgttactc aacttcattc ctccgtcagt tgaactgctg catcgctttc
     3361 aaagcgccgt ctttgataat cgtccgtagc gcgtccgcgc tcgttttcaa tgtttcttcc
     3421 accagcggct gctcgcttcg cgaaaacgtg tcgagcacga accgt
//
LOCUS       DASWTX010000092         2227 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_174214, whole genome shotgun sequence.
ACCESSION   DASWTX010000092 DASWTX010000000
VERSION     DASWTX010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2227
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174214"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(257..>2227)
                     /locus_tag="VGD38_01515"
     CDS             complement(257..>2227)
                     /locus_tag="VGD38_01515"
                     /inference="COORDINATES: protein motif:HMM:NF042646.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6603 domain-containing protein"
                     /protein_id="HEY0726715.1"
                     /translation="HYTISDDDDNLNLLRPEKTFFVFAMLNAASGGGITFGPIQFTGI
                     ALGFGYNRRLKVPVIEDVAEFPLVQMVMGEGGFQKDETELIAQTGKPLEDPVSTLAKM
                     KDHLVAERGQFFACGGVRFTIAGVVDCFALLVVQWGGGEFEISLLGLARFRHTRDASA
                     RPICYVEMQILMSIKPSEGTFKLQALLTNNSWIINTDCKLTGGFALCVWFGGTHKGDM
                     VLTLGGYHPRFTRPEHYPVVPRLGLNWPVTNHLSIQGGVYLAITPSCLMLGGKLEATF
                     NSGRISAWFTAHLDVVVNWQPLFFEIDLGISLRVEASFTLTALKLTLGASIKMWGPPV
                     GGTAHIDLVVVSFDIDFGIPRPKEPELIDTWQQFCHNFLNMSGGDRKAVSGPVPAFPI
                     VQPSLAAGRNNLNALPNARREDPAPKPADAVWKVRADELELAAVAAVPVSTLNIGRAK
                     SISANDGIQAANFSGQAMMVTKPIAIDTAGIPSKSSARKVGAHPMGKKLESVLNVTVV
                     CDDVSAAQPELKSWTIEEERGSVPEAIWKSEKPTLGPSEPSAKLIEGCITGIKRLKPP
                     SGKLGARSTPPKIEWHPLAAGTVVKSETTQESPSSTRSRNIQQALAQKQDEQNKIAAA
                     LTTAGFTLSWKAPARVEFRELQADPLAGAVAA"
BASE COUNT          452 a          679 c          642 g          454 t
ORIGIN      
        1 ctcgccgttg gttcttccaa gaatcggaat gggcttcgcc cctggttcgg gctttgcccc
       61 cgaagctgat gggccatagg ccgtaccagg ggcatagccc ctttttcttt tcaaaggcct
      121 ccggcgaggc gtagcctcgc ctcacatccg gcggcgaagc cgcataagct acgctgcgac
      181 cgcgcgggga aggcacataa gctacgctac aagtgcgcgg caaagccgcg tgtaaaacac
      241 caagctcctc ttgtaactac gccgcgactg cgcccgcgag cggatcggct tgcagttcgc
      301 gaaattcaac tctcgcgggc gctttccatg acaaggtgaa gcccgcggtg gttaaagctg
      361 cggcgatctt gttttgttcg tcctgcttct gggccaacgc ttgctggatg ttgcgcgagc
      421 gagttgaaga cggcgactcc tgtgtggttt cggatttcac aacggtgccg gcggcgagcg
      481 gatgccactc gatcttcgga ggcgtcgaac gcgctccgag ttttccagat ggcggcttga
      541 gccgcttgat tcccgtgatg cagccctcga tcagcttcgc actcggctcg gacggaccaa
      601 gcgttggttt ctccgatttc cagatcgctt ccggaaccga accgcgctct tcttcgatgg
      661 tccaactttt cagttccggt tgagctgccg aaacgtcgtc gcaaacaacc gtcacgttga
      721 gcactgactc gagcttcttg cccatcgggt gagcgcccac tttcctggcc gagctcttcg
      781 acggtattcc cgcggtgtcg atcgcgatgg gcttcgtgac catcatcgct tggccgctga
      841 agttggcggc ctgaatacca tcattcgcgc taatgctctt ggcacgcccg atgttcaacg
      901 tcgacaccgg aactgccgca acagccgcaa gctccaattc atccgcacga accttccaca
      961 ccgcgtccgc cggcttcggc gccggatcct cgcgtcgagc attcggcagc gcgttcaagt
     1021 tgtttcgccc ggccgcaaga ctcggctgaa cgatcggaaa cgccggcacc ggcccgctaa
     1081 cagctttgcg atcgcccccg ctcatgttta ggaagttgtg acagaactgc tgccaggtgt
     1141 cgatcagctc cggttccttc ggacgcggaa tgccgaagtc gatgtcaaac gagacgacca
     1201 caagatcgat atgcgcggtg ccgccaacgg gcggtcccca catcttgatc gaagcgccga
     1261 gcgtcagctt gagagccgtg agcgtgaacg aagcttcgac gcgcaacgag atgccgagat
     1321 cgatttcgaa aaagagtggt tgccagttaa cgacgacgtc gagatgcgcc gtgaaccacg
     1381 ccgaaatgcg gccggagtta aacgttgcct ccagctttcc gccgagcatg agacacgacg
     1441 gcgtgatcgc gagatacacg ccgccctgga tggagagatg gttagtgacc ggccagttca
     1501 aaccgagccg cggcacgacc ggataatgtt cggggcgagt gaaacgcgga tgataaccac
     1561 cgagcgtgag caccatgtcg cctttgtgtg tgccgccgaa ccagacgcac aacgcaaagc
     1621 cgccggtaag tttgcaatcg gtgttgatga tccacgagtt gttcgtcagc agtgcttgta
     1681 acttgaacgt gccctcgctc ggtttgatcg acatcaggat ctgcatctcg acgtagcaga
     1741 tcggccgcgc gctggcgtcg cgtgtgtgac ggaaacgagc aagacccagc agcgagattt
     1801 caaactcgcc accaccccac tgcacgacga gcaaagcgaa acaatcgacc acaccggcga
     1861 tcgtgaaccg cactccaccg caagcgaaga actggcctcg ttcggcgacg agatggtcct
     1921 tcatcttcgc caacgtcgaa accggatctt cgagcggctt accggtttga gcgatcagct
     1981 cggtttcgtc tttctgaaat ccgccctcgc ccatcaccat ttgcacgagc ggaaactcgg
     2041 caacgtcttc gataacgggc accttcagcc ggcggttgta accgaagccg agtgcgatac
     2101 ccgtaaactg aatcggtccg aaagtgatgc cgccaccgct tgccgcgttg agcattgcga
     2161 agacgaagaa agttttttcc ggacgcagca ggttcaggtt gtcgtcgtca tcgctgatgg
     2221 tgtagtg
//
LOCUS       DASWTX010000093         1580 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_66310, whole genome shotgun sequence.
ACCESSION   DASWTX010000093 DASWTX010000000
VERSION     DASWTX010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1580
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66310"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1168)
                     /locus_tag="VGD38_01520"
     CDS             complement(<1..1168)
                     /locus_tag="VGD38_01520"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0726716.1"
                     /translation="MKAALSFYTDALKIALQSIFAHKLRAFLTLIGVIIGVSSVVTVG
                     ASISGLNTYIVDKISKVLGSNHFMIARMAFSGDMDDEEFERRNRRNKRITWEDYEWVR
                     DHCLSCSEVGAAAGNGVDLRQDGIDFPGAVVFGATANMVDIEDKTIESGRFISNDEVQ
                     RSAMVVVLGGDIKDKFFPNTDAIGKVLKIRGLPMRVVGVEEKRGAFFGDSFDRHVYIP
                     ITTHLQIFGRNGMQIHGKTRTRENFHAAIEDARVAMRIKRKLNGNEEDDFGLVNVEEL
                     NNQIDEFTNMIALVVVPITAITLIVGGIVVMNIMLVSVTERTFEVGLRKAVGATRRQI
                     LLQFLIESAILCALGGVIGLLLSWGITTLITTLASITMTITLFYIILAGGVSSLV"
     gene            complement(1257..>1580)
                     /locus_tag="VGD38_01525"
     CDS             complement(1257..>1580)
                     /locus_tag="VGD38_01525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726717.1"
                     /translation="NHAPILFRLWLAVLSGLFVMVPLTFATIYAERSIQGSVDTMIYG
                     SVTQAEVAANRLKWFGFIPLKEYNRLALAYGREWDIHKKAVLGRTYWELTGEDIDLRQ
                     RMLSD"
BASE COUNT          343 a          447 c          444 g          346 t
ORIGIN      
        1 cgacaaggct cgagaccccg ccggcaagaa tgatgtagaa gagcgtgatc gtcatcgtga
       61 tcgacgccaa ggtcgtgatc agcgtcgtga ttccccacga caacagcagc ccgatgacgc
      121 cgccgagcgc gcaaagaatt gccgactcga tcaggaactg aagcagtatc tgccggcgcg
      181 tggcgccgac ggcctttcgc agtccgactt caaacgttct ttcagtgacg ctcaccagca
      241 tgatgttcat caccacgatg ccgccgacga tcagcgtgat cgccgtgatc ggaacgacga
      301 cgagcgcgat catgttggta aactcgtcga tctgattatt cagctcctcg acgttaacca
      361 gtccgaaatc gtcttcctcg ttgccgttta gcttgcgctt gatgcgcatg gccacgcgcg
      421 cgtcttcgat cgctgcgtga aagttttcgc gcgtgcgggt cttgccatga atctgcattc
      481 cgttgcggcc gaagatctgc aggtgcgtcg tgatgggaat gtagacgtga cgatcgaacg
      541 agtcgccaaa gaacgcgccg cgcttctctt cgacgccgac tacgcgcatt ggtagtccac
      601 gaattttcaa gaccttgccg atcgcgtcag tgtttgggaa aaacttgtct ttgatatcgc
      661 cgccgagaac cacgaccatc gccgatcgtt gcacctcatc attggagatg aagcgtccgc
      721 tttcgatcgt cttgtcttcg atgtcgacca tgtttgcagt cgcgccgaag acgaccgcgc
      781 cgggaaaatc gatcccgtct tgccttaaat caacgccgtt gcccgccgcc gcgccgacct
      841 ccgagcagga gagacaatgg tcgcgcaccc actcgtaatc ctcccaggtg attcgcttgt
      901 tgcggcggtt gcggcgctca aactcttcgt cgtccatgtc acccgaaaaa gccatgcgcg
      961 cgatcatgaa atgattgctg ccgagcacct tcgagatctt gtcgacgatg taagtattga
     1021 gaccgctgat cgacgcgccg acggtcacga cggaagagac accgataatg acgccaatca
     1081 gcgtgagaaa cgcgcgcagc ttgtgcgcga agatcgactg caaagcgatc ttcagggcgt
     1141 cggtgtaaaa agacagagct gctttcataa tctgggcttc accacggatt ttggggctta
     1201 gcgcgtcggt cgggtggcta tacgtgacct tgcagggcga agttcagacg gagaatctaa
     1261 tcactcaaca tccgttgccg gaggtcaatg tcttcgccgg tcagttccca ataggttcgg
     1321 ccgaggacag cctttttgtg gatgtcccat tcgcggccgt aggcaagcgc gaggcggttg
     1381 tactctttga gcgggatgaa accaaaccac ttcagtcgat tcgctgcgac ctctgcttga
     1441 gtgacgcttc cgtagatcat cgtgtcgacg gagccttgaa tcgatctttc cgcgtagatg
     1501 gttgcaaagg tcagagggac cataacgaat agtccgctca gcactgcaag ccaaagccga
     1561 aagaggatcg gtgcgtgatt
//
LOCUS       DASWTX010000094         1658 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_23012, whole genome shotgun sequence.
ACCESSION   DASWTX010000094 DASWTX010000000
VERSION     DASWTX010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1658
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23012"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..663)
                     /locus_tag="VGD38_01530"
     CDS             complement(<1..663)
                     /locus_tag="VGD38_01530"
                     /inference="COORDINATES: protein motif:HMM:NF022784.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3142 domain-containing protein"
                     /protein_id="HEY0726718.1"
                     /translation="MRLAFIVILLPILLAVFGSRAPTQPKVILWAWERPEDLTFIDPQ
                     KTGVAFLAKTIYLRGDKVVVRPRLQPLKLAPGTRLVAVVRIETDPTDKPSLSSLQLQQ
                     TAREIINSSASSVVQIDFDAKVSERNFYRELLQQVRQQLPASTKLSITALASWCAGDD
                     WLHDLPIDEAVPMLFRLGVDQRQFRRRLETGQPFESRRCQNAAGVSTDEPVTAPTVDR
                     LYI"
     gene            731..>1658
                     /locus_tag="VGD38_01535"
     CDS             731..>1658
                     /locus_tag="VGD38_01535"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY0726719.1"
                     /translation="MERETLDFDVVFVGAGPANLSGAYHLARLAKQHNLEIEIAVIEK
                     GSAVGAHILSGAVMDPRALKELIPDFVEQGAPLESPVLEDQFLYLTPKHAIRSPITPP
                     PLNNHGYYIVSLNRLTAWLGEKCEEAGVNIFPEFPGADLLYDENDRVIGVRTGDKGID
                     KEGKRKANFEPGVDLHAKLTVLGEGSRGSLTKQLVERLGLAEGRDPQVYSIGVKELWE
                     LPDDRYPAGRVTHTLGFPSDSQTYGGGWIYGMQNRVLNIGYVTGLDYKDPLIDPHAEF
                     QLFKTHPFIAKLLEGGKMIRYGAKTIAAGGYFA"
BASE COUNT          357 a          435 c          512 g          354 t
ORIGIN      
        1 aatataaaga cgatcgactg tgggtgcggt gacgggttcg tccgttgaaa cgcccgctgc
       61 gttttggcac cggcgcgatt cgaacggttg gccggtttct aatcttcgtc gaaattgacg
      121 ctggtccacg ccgaggcgga acagcatcgg cacggcttcg tcgatcggaa gatcgtgcag
      181 ccagtcgtca ccggcgcacc acgaagcgag cgcggtgatg gaaagttttg tggatgcagg
      241 cagttgctga cgaacctgct gaagcaattc gcggtagaag tttctttcag agaccttggc
      301 gtcgaagtct atctggacca cagatgacgc ggatgaattg atgatctcgc gcgcggtttg
      361 ttgcagttgt agggaggaga gtgagggttt gtctgtgggg tcggtttcga tccgtactac
      421 cgcgacgagt ctggtgcccg gcgcgagttt cagtggttgt agacgtggcc tgacgacgac
      481 tttgtcgccg cgcagataga tagtctttgc taaaaacgcg acgccggttt tttgcggatc
      541 gatgaaggtg agatcttcgg gacgctccca cgcccagagg attactttcg gctgtgtcgg
      601 ggctcgcgaa ccgaacactg cgagcaagat cggtaacaga atgacgataa acgcgagtct
      661 catcggagtt cgccagagtt tacaccacgg attatagaga tcacacggtt ttcgatatac
      721 tgaaccgctt atggaacgtg agacattgga cttcgacgta gtattcgtcg gcgccggacc
      781 ggcgaacctc agcggcgcat atcaccttgc ccgtctggcc aaacaacaca acctcgaaat
      841 cgagattgcc gtgatcgaaa aaggctcggc cgtgggcgcg catatcctct cgggcgccgt
      901 catggatccg cgtgcgctca aagagttgat ccccgatttt gtcgaacaag gcgcgccgct
      961 cgagtcgccg gttttagaag atcagtttct ctatctcacg ccgaagcacg cgatccgttc
     1021 gccgatcaca ccaccgccgc ttaacaacca cggttactac atcgtttcct tgaatcgtct
     1081 gaccgcgtgg cttggcgaga agtgtgaaga agccggcgtg aatatctttc cggagtttcc
     1141 cggcgcggac ttgctttacg atgaaaacga tcgcgtgatc ggcgtgcgca ccggtgataa
     1201 aggcatcgac aaggaaggga agcggaaagc gaacttcgaa cccggcgtcg atctgcacgc
     1261 gaaactcacg gtgcttggag aaggctcgcg cgggtcgctg acgaaacaac tcgtcgagcg
     1321 gctcgggctc gcggagggac gcgatccgca ggtttacagc attggcgtga aagagttgtg
     1381 ggaactgccg gacgatcgtt atcccgccgg gcgcgtcacg cacacgctcg ggtttccgtc
     1441 agactcgcag acgtacggcg gcggctggat ttacggcatg cagaatcgtg tgctgaacat
     1501 tggttacgtt accgggctcg attacaaaga tccgctgatc gatccgcacg cggagtttca
     1561 actgttcaaa acgcacccgt tcatcgcgaa gctgctcgaa ggcgggaaga tgatccgata
     1621 cggcgcgaag acgatcgccg cgggcggtta ctttgcga
//
LOCUS       DASWTX010000095         1856 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_348067, whole genome shotgun sequence.
ACCESSION   DASWTX010000095 DASWTX010000000
VERSION     DASWTX010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1856)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1856)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1856
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_348067"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..597
                     /locus_tag="VGD38_01540"
     CDS             <1..597
                     /locus_tag="VGD38_01540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726720.1"
                     /translation="RTQDGTAPYSIIENVTFTNNIVRGAEGAINLLGRDNEKPSAQSS
                     GLMIANNLFVDIRGPFLTMNGYQKVSFIHNTHLQTYNIMILYGTPAADFVYRDNLTIR
                     GPKGYGVFGDTVGEGIAAIRKFTPGADFRNNVLAGADKSIYPKDNYYPSPEKVGFVNF
                     EKGDYRVSPSSQFAKGASDGQPVGVDWSKLNFSAKPAE"
     gene            608..>1856
                     /locus_tag="VGD38_01545"
     CDS             608..>1856
                     /locus_tag="VGD38_01545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726721.1"
                     /translation="MTASVEKRPLRVGLLVDSLTQPRWVFQVIASIKASTIAEICVVV
                     KNEATPPDQPRGRLQAYWRNRNYLLYALYEKLDSRRPINDTDAFEDVEVQELLADCEV
                     VGVTPLMKKFSDWFPEDAIDKIRSYDLDVALSFGFRILRGEALRIAKHGVWSYHHGDN
                     LVNRGGPAGVWEVMDASPISGSVLQVLSEDLDNGEVLDRTWLRTSDRFSVRISKNNLY
                     WRSSSFVMRKLRELYEQGSAAREQSAFRPYYNRLHKMPTNAELLPKLARLTWTYAANK
                     LRYAFYFDQWTLAYRFRTSPTDPNNSFYRFTHLTPPKDKFWADPFPVKHEGKYFVFFE
                     EYLYKNDKAHISVMELTKSGPTEPVPVLKRDYHLSYPFLLYWNDRYYMIPETAGNKTV
                     EIYRCESFPGEWKLETVLLGGVPG"
BASE COUNT          419 a          539 c          519 g          379 t
ORIGIN      
        1 cgcactcagg acggcaccgc gccctactcg atcatcgaga acgtgacctt cacaaacaac
       61 atcgtgagag gcgcggaagg cgcgatcaac ctgctcggca gggataacga aaagccgtcg
      121 gcacaatcca gcgggttgat gattgcgaac aacctgttcg tagacatccg tggtccattc
      181 ctgaccatga acggctacca aaaggtgtcg ttcattcaca acacacacct ccagacttac
      241 aacatcatga ttctctacgg cacgcccgcc gccgacttcg tctatcgcga caacctgacg
      301 attcgcgggc cgaagggtta tggtgtgttt ggcgatacgg tgggagaagg catcgcggcg
      361 atcaggaagt ttactcccgg cgcagatttc aggaacaacg tgctcgcggg cgccgacaaa
      421 tcgatttatc cgaaagacaa ctactacccg tcgcccgaga aagtcggctt tgtgaacttc
      481 gaaaaaggcg actaccgtgt ctccccttcg agccagttcg cgaaaggtgc ttcggacggc
      541 caaccggtcg gcgtcgactg gagcaagtta aatttcagcg cgaagcctgc tgaatgacga
      601 tcactgaatg accgcttcag ttgaaaaacg cccccttcgc gtcggtctgc tggttgattc
      661 actcactcaa ccccgctggg ttttccaagt catcgccagt atcaaagcgt cgacgatcgc
      721 cgagatctgc gtcgtcgtga agaacgaagc aacgccgccc gatcagccgc gcggcagact
      781 acaagcctac tggcgaaaca gaaactacct gctctacgcg ctgtatgaga agctcgattc
      841 gcgccggccg ataaacgaca cggacgcgtt tgaagacgtc gaagtgcagg agttgctcgc
      901 cgattgcgag gtcgttggcg tcacgccgtt gatgaaaaag ttttccgact ggttcccgga
      961 agacgcgatc gataagatcc gcagctacga tctcgacgtc gcgctctcgt ttggttttcg
     1021 catcctgcgc ggcgaagcac tgcgcatcgc gaagcacggc gtctggtcct accatcacgg
     1081 cgacaatctc gtgaaccgcg gcgggccggc cggggtgtgg gaagtgatgg acgcgtcgcc
     1141 gatctcgggt tcggtgttgc aggtgttgtc ggaagatctc gacaacggcg aggtgctcga
     1201 tcgcacatgg ttgcgcacga gcgatcgctt ctcggtgcgg atcagtaaga ataatctcta
     1261 ctggcgctcg tcgagttttg tgatgaggaa gctgcgtgag ttgtacgaac aggggagcgc
     1321 cgcacgcgag caaagcgcat ttcgtccgta ctacaaccgg ctgcacaaga tgccgaccaa
     1381 cgccgagctc ctgccgaagc tcgcgcggct cacctggacc tacgccgcga ataagctgcg
     1441 ctacgcgttc tatttcgatc agtggacgct cgcttaccgc ttccggacca gcccgaccga
     1501 tccgaacaac agtttctatc gcttcacgca tctgacgccg ccgaaagata agttttgggc
     1561 cgatccgttt ccggtgaagc acgaagggaa gtatttcgtc ttcttcgagg agtatcttta
     1621 caaaaacgac aaagctcaca tctcggtgat ggagttaact aagtctggtc caactgagcc
     1681 ggtgccggta ttaaagcgcg actatcacct gtcgtatccc ttccttctgt actggaacga
     1741 ccgctactac atgattccgg aaaccgccgg caacaagact gtcgagatct accggtgcga
     1801 gtcgttcccc ggtgagtgga aactcgaaac cgtgctcctc ggcggcgttc cgggac
//
LOCUS       DASWTX010000096         1649 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_66335, whole genome shotgun sequence.
ACCESSION   DASWTX010000096 DASWTX010000000
VERSION     DASWTX010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1649
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66335"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..969
                     /locus_tag="VGD38_01550"
     CDS             <1..969
                     /locus_tag="VGD38_01550"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071111 - cyclic-guanylate-specific
                     phosphodiesterase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing phosphodiesterase"
                     /protein_id="HEY0726722.1"
                     /translation="IGISLYPIDDRDTAGLLKSASAALDRAKEQGGNNYQFYTAGGTT
                     RALKQLVLESNLRGALEREEFVVHYQPQVRIPDFHLVGMEALVRWRHPSLGMLYPSEF
                     VQLAEDSGLIIALGDWVMRNACSQNMAWQDKGLAPMCLSVNFSARQFQQPSFIASVAE
                     ILKETNLDPRWLELELTESSIMKEPEQAIEKLHELKLMGIKVAIDDFGTGYSSLNYLK
                     RFPIDTLKIDKTFVSDVCKDPHDTAIVRAIINLGHALDLTVIAEGVETQEQLQYLSSL
                     GCDVVQGFLFSKSLTASAFEELLIEQRRAAALSMNHDTAPLVGEIA"
     gene            complement(969..1604)
                     /gene="pgl"
                     /locus_tag="VGD38_01555"
                     /pseudo
     CDS             complement(969..1604)
                     /gene="pgl"
                     /locus_tag="VGD38_01555"
                     /inference="COORDINATES: protein motif:HMM:NF013356.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0017057 - 6-phosphogluconolactonase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
BASE COUNT          351 a          433 c          502 g          363 t
ORIGIN      
        1 atcggtatca gtctttaccc gatcgacgat cgcgacaccg cgggtttgtt gaagagcgcg
       61 agcgccgcgc tcgatcgcgc gaaagagcag ggcggcaaca actaccagtt ctacaccgcg
      121 ggcggcacga cgcgcgcgct caagcaactc gtgcttgaaa gtaatctgcg cggcgcgctc
      181 gagcgcgaag agttcgtcgt tcattaccag ccacaggtga ggattcccga ttttcatctc
      241 gtgggcatgg aagcgttggt gcgttggcgc catccgagtc tgggaatgct ctatccgagc
      301 gagtttgtgc agctggctga agacagcgga ttgatcatcg cgctcggcga ttgggtgatg
      361 cggaatgcgt gttcgcagaa catggcgtgg caggataaag gactcgcgcc gatgtgtctg
      421 tcggtcaact tttcggcgcg gcagtttcag cagccgtcgt tcatcgcgtc ggtggcggag
      481 atcttgaaag agacgaacct ggatccgcgc tggttggagt tggagttgac cgagagctcg
      541 atcatgaagg agccggagca ggcgattgag aagctgcacg agttgaagct gatggggatc
      601 aaagtcgcga ttgacgactt cggcaccggt tattcatcgc tgaactattt gaagcgcttt
      661 ccgatcgaca cgttgaagat cgacaagacg tttgtgtcgg acgtttgcaa agacccgcac
      721 gacacggcga tcgtgcgcgc gatcatcaac ctgggccacg cgctcgatct gacggtgatt
      781 gcggagggtg tcgagacgca ggaacagctt cagtatttga gttcgcttgg ttgcgatgtg
      841 gttcagggat tcttgttctc gaagtcgttg acggcgtcgg cgtttgaaga gttgctgatc
      901 gagcagagac gcgcggcggc tttatcgatg aaccacgaca cggcgccgtt ggtcggagag
      961 atcgcctgag cggggtattg atttgaatct ggttttgttt ttattacctc ccttaagatc
     1021 tcacccttgg acgctccagt gacaagaaac accactgact ttgcgttatt cacaaccggc
     1081 aacgtcatcg taattctgta cgcgttgaac ttctctaccc acggcgcagc gacgagtagt
     1141 tgcgactcgt gaagtacttc tgaaccagga aaaatagaag ccgtgtggcc gtcctcgccg
     1201 aggcctaaca ggaggagatc aaaggcaggg atggcttcgc cgaagaattt acgcagttcg
     1261 gtttcgtagg ctttagcggc gtcctcagcc accgggttct cggccgggat gcgatgaatg
     1321 ttttccggtg gcacgggtac gcgcgagaac atcgcctcgt tcaccatgcg atagttgctc
     1381 tcagggtgat cgggtggaac gtgacgttcg tcgctgaaga agaagtgagt cttgtcccac
     1441 gcgatctgat cgcgaaacgg ttcacgcgga tcggataaca gttcgtaaag cacgcgcggt
     1501 gtcgaaccac cggaaagagc caccgattgc ggcttcaaac tcacccaata ctccgccgcg
     1561 gcgcgcgcca cttccgccgg attctcaaaa actttcactt ccataacttc acctaaacgc
     1621 gacgatgcgc aacggcccgc cgctgcccc
//
LOCUS       DASWTX010000097         2832 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_348082, whole genome shotgun sequence.
ACCESSION   DASWTX010000097 DASWTX010000000
VERSION     DASWTX010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2832
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_348082"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..507
                     /locus_tag="VGD38_01560"
     CDS             <1..507
                     /locus_tag="VGD38_01560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726723.1"
                     /translation="ELVQKGELTHLQKVWVLARTAKNLAATDKEKAAELVEMASNEAR
                     RIDVSDPSRPQALIAVANALKDIDVVRVWDATFDAVKAANSAEGFTGEDGVMVLKFQS
                     KGSSSINTSSVPEFDLEGIFRDLAKFDYERAVELARGFQAEGPRAIATIAIARAVLEP
                     KKKDTARN"
     gene            complement(504..1247)
                     /gene="bshB1"
                     /locus_tag="VGD38_01565"
     CDS             complement(504..1247)
                     /gene="bshB1"
                     /locus_tag="VGD38_01565"
                     /inference="COORDINATES: protein motif:HMM:TIGR04001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019213 - deacetylase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol biosynthesis deacetylase BshB1"
                     /protein_id="HEY0726724.1"
                     /translation="MSSDAQLDVLAVFSHPDDAELSVAGTLLKLKSLGYRTGVCDMTR
                     GEMGTRGTPEIRAQEALDAARILKLDVRVNLEQPDGHVWPTEVARTAFARVLRTYKPK
                     VLLTTHEDDPHPDHANTSIIVRQAARLASMGRYDEEAGLSPVPMPAIMHSLFSRRIVP
                     SFVVDVSGFVEEKMASIRAHSSQFYSAGSKEPQTRISERGFLAEIEVRMRYFGSLIGV
                     EAGEPFYVREALNVDDPLALLTRPMNIYS"
     gene            1376..2248
                     /locus_tag="VGD38_01570"
     CDS             1376..2248
                     /locus_tag="VGD38_01570"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEY0726725.1"
                     /translation="MLLILLLLLQIALAPANVNDVKADALLLESGKAATLRKHAAENT
                     EIKIVSYNIRWRGGDDLKRLVKLLHEDPEIGGAAILGLQEVDRRKKRTGNHNTVKALA
                     DELGMHYAWAAPPAAEPDDEEETGVAVLSIYPLSDVKRIVLPHPGPGKRRRVALGATV
                     EMEGRQWRVYSAHAETRISVDKKIEQFNAILEDLARYPADMPAIAMGDLNTWEPSADE
                     KTIKLFSKAGLKTPFGTQSTFRRRVLLVPIEFRLDWVWLRGLEATNSGIDRQIEISDH
                     WPLWANIKVAATKK"
BASE COUNT          651 a          789 c          809 g          583 t
ORIGIN      
        1 gagctggtcc aaaaaggcga actgactcat ctgcaaaagg tttgggtgtt agcccggacc
       61 gccaaaaatc tcgccgcaac cgacaaagag aaagctgctg aactggtgga aatggcgtcg
      121 aacgaagcgc gccggatcga cgtttccgat ccctcacggc cacaggcttt gatcgccgtg
      181 gcgaatgcgt tgaaagacat cgacgtggtg cgtgtttggg atgcgacctt cgacgccgtc
      241 aaagcggcca actcggccga gggattcacc ggcgaagacg gcgtgatggt gttgaagttt
      301 cagagcaaag gaagctcgtc gatcaacacc agcagcgtac ccgagtttga tctcgaagga
      361 atcttccgcg acctcgcgaa gtttgattac gagcgggcgg tggagctcgc gcgcggtttt
      421 caggctgaag gaccacgtgc tatcgcgacg atcgcgattg cgcgcgcggt gttggagccg
      481 aagaagaaag acaccgcgag aaattaagag tagatattca tcggccgcgt taacagcgct
      541 aacgggtcgt ctacgttcaa cgcctcacgc acgtagaacg gctcaccagc ttcgacgccg
      601 atcagcgatc cgaagtaacg catccgcact tcgatctccg cgagaaaacc tcgttcgctg
      661 attcgtgtct gcggttcttt cgaccctgcg ctgtaaaact gcgacgagtg cgcgcggatc
      721 gaagccatct tctcttcaac gaatcccgac acatcaacca caaacgaggg aacgatccgc
      781 cgcgaaaaga gcgagtgcat gatcgccggc atcggcaccg gcgagagtcc cgcttcttcg
      841 tcgtaacgac ccatcgacgc cagccgcgct gcctgtcgca cgatgatcga cgtgttcgca
      901 tgatccggat gtggatcgtc ctcgtgcgtc gttaacaaga ccttcggctt gtacgttcgc
      961 agcacgcgcg cgaaagccgt gcgcgcgact tcggtcggcc acacgtggcc gtcgggttgt
     1021 tcgagattta cacggacgtc gagtttcaga atgcgcgccg cgtccagtgc ttcctgcgcg
     1081 cgtatttctg gcgtgccgcg cgtgcccatc tcaccgcgcg tcatgtcgca cacgccggtg
     1141 cggtaaccga gcgatttgag tttgagcagt gttccggcga cggaaagctc cgcgtcgtcc
     1201 gggtgtgaaa ataccgcgag cacatcaagc tgggcgtctg aactcatacg cggattttag
     1261 cacttgactg gaaagacaac cgtttgtcta cacttctgac actaagtttt agagaatctg
     1321 gtccattctc gcggaaacta cccgcttaaa gatttttcag gagaaacaaa aacacgtgct
     1381 gttaattctc ttgctattgc tgcaaatcgc tttagcaccg gcaaacgtga acgatgtcaa
     1441 agccgatgcg ctgctgctgg aatcaggcaa agccgcgacc ctccgcaagc acgctgcgga
     1501 aaatacggag atcaagatcg tctcttacaa cattcgctgg cgcggcggcg acgatctcaa
     1561 acgtttggtc aaactgctgc acgaagatcc cgaaattggc ggcgcggcaa ttctcgggtt
     1621 gcaggaagtg gatcggcgca agaaacgcac cggcaatcac aacaccgtga aagcactggc
     1681 cgatgagttg ggtatgcact acgcgtgggc ggcgccgccg gcggctgaac ctgacgacga
     1741 agaagaaacc ggcgtcgcgg tactgagcat ctatccgttg tcagacgtga agcgaatcgt
     1801 cttgccgcat ccgggaccgg gtaaacggcg acgcgtcgcg ctcggagcga cggtcgagat
     1861 ggaaggccgg cagtggcgcg tctattccgc gcacgcggaa acgcggatct cggtggacaa
     1921 aaaaatagag cagttcaacg cgatcctgga agacctcgcg cgttatccgg cggacatgcc
     1981 ggcgatcgcg atgggcgatc tgaacacgtg ggaaccaagc gccgacgaaa aaacgatcaa
     2041 gctgttttcg aaagctggtt tgaaaacgcc gttcggcacg cagtcgactt ttcggcggcg
     2101 cgttttgtta gtgccgatcg agtttcggct tgattgggtt tggctgcgcg gattggaggc
     2161 gacgaactcc ggtatcgatc gtcaaatcga aatttcggat cattggccct tatgggccaa
     2221 cataaaagtg gccgcaacta aaaaataacg cgggggcact tgaaaacttg tgtgactcgt
     2281 gtcacaaaat atctcgatga cctgccataa ctgcgaacga cgcgcgagtt ggatgcggac
     2341 acgttgccgc acctgccaga gccgtctgcc cgcctggtac gtcgtcgccg ccaccgcaat
     2401 ctgcgcggga atttacggcg ccttcctgct cgtggaaacg atcttctaac gccgtagccc
     2461 gctgacttca gcccacaagt tgtaagttgt aacacttctg aatacagcac accgtttttg
     2521 gttaacgccg aaggcgtttg ctaatttcag cccggggttg cttcaaccct gggtaacaac
     2581 aaagaagcga gaccaaacgc tgaaagcgtt ggcgactgga cccgcactat ttgccaacac
     2641 cttcggcgtt ggtttcggtt ttttcattcg taacccaggg tataaaccct gggctgaaat
     2701 tagcgaacgc cttcggcgtt ggaagcagag agcactagat gtagataaaa ctacttgtct
     2761 ctgcccctga ttacctgacg ccccactccc acaatccgta actgatcttc ttgtcgagtg
     2821 gcttgccggc tt
//
LOCUS       DASWTX010000098         5203 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_391073, whole genome shotgun sequence.
ACCESSION   DASWTX010000098 DASWTX010000000
VERSION     DASWTX010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5203
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_391073"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..813)
                     /locus_tag="VGD38_01575"
     CDS             complement(<1..813)
                     /locus_tag="VGD38_01575"
                     /inference="COORDINATES: protein motif:HMM:NF012708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEY0726726.1"
                     /translation="MPVNNQYIIVREDLGFDPVTIISDGLLIGRLTECELLLNHPSVS
                     RVQAGIKQFDHAYYLFSLRPKNPVILNGRPVEDNEALAGGDVIEVGPFRLEVDATDDG
                     LIIRVEMTIGSRASEIDLSDPGFSTDKLVAPVEGKAKKARPAPIAGTKALDIFWDKRI
                     REAGKMVRPSPLFPKAGRRTGKAQFNWTPTTDLVSRWPAAFFTWALILVGACSVAAAY
                     WYTDAFSPGPLSQAHASARMVLTPPIAVAATNGSCTSCHALKGSMDERCAACH"
     gene            complement(803..3283)
                     /locus_tag="VGD38_01580"
     CDS             complement(803..3283)
                     /locus_tag="VGD38_01580"
                     /inference="COORDINATES: protein motif:HMM:NF024247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HEY0726727.1"
                     /translation="MPREITDRGRVVEAVQKLALTAELFEEQNGKQKYAGDLEVILQG
                     RDYGNGKRVGPYVRLLAYDGGEEIMREGEWGGNTFYIAVEGALDVYVGSNGSRRKVNE
                     LEPGVCFGEMSLLAGIERNATVAVPLNQSAVVLEVTRPALRLLRKLPKFGQILDETYR
                     KHGFARVLEDLTRYTDQPLSQGLMNALRESARFMVYGKNHVLCKERDPIDRVILIKTG
                     WLRRSRGIRFDAAAPEVVMSMDEGIGVDFLGAGNCLGLEGVNEPVKWKYSASLMARTE
                     VLEISLSTFSSDPALRQQLFTVLSSFSNADDASPLTLEAIKDINALKSAEETIATGII
                     DGRNVLVMDMDLCVRCGNCSLACHKVHGQSRLLRRGIQIERPVAIGKKRLQHALVPQV
                     CMHCADPECMTGCPTGSIFRDPLGHVEIDRVTCIGCFDCATQCPYDAISMVPREAVPA
                     NGGGFVSKLARVFSFRIPEPVAPAGDDVVAIKCNLCEGTSLNPPGAPGARRQAYSCEE
                     NCPTGALVRVNPVEYFDEVKTARGLVFRDQTHAFGRNIHKSDPLARVWHIVGVVATLL
                     AIAGVAWGLARYGYDGVMAGAWLTMRWLTGIVGLGGVAVVMTYPFRKQIYRRRAGALR
                     YWMLVHVYAGVVAGVVLLLHSGSNLGGLLTSLLYVVFDLGLVSGVIGVIAYIVSPRIM
                     TRIEGEPLLVEDLEARRDELEKQAATILEQSEGWLKDEIRDQVYPRYRSFGFLWRQLS
                     RREELKPLLAQAREEFKTQTMRTATHEEREALLSAVETAVTLRRVEALLLLHRTLRSW
                     IPIHVVSTAAMLALMIVHIVQVVFFNAR"
     gene            3360..4505
                     /locus_tag="VGD38_01585"
     CDS             3360..4505
                     /locus_tag="VGD38_01585"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HEY0726728.1"
                     /translation="MLPEKFHSLSLEQQIGQFLFIGLPGTELDQQTRDLVTEVQPGGV
                     IIFGRNVAGPEQLRSLLDGVRELVAAPLIVGIDQEGGLVDRLRRIFTPMPSARTIRQH
                     GDLAAARALGRITGEALRMLGFNINFAPVMSIMTDDRDLLSNGLYSRSFGRSPGEVLG
                     YTTVYMRGLQGTGLLGCLKHFPGIGAGEVDSHEEMPVVQLSHDDLIAQDLAPYIELFQ
                     RRDDRVRCVMVSHGGFPNIDIREETTGGLLEPASLNYNIVTKLLRQELGYKHLVVTDD
                     LEMGAITRHYEIGDAAVRATLAGEDMLLICASPERIRRGHEALLEAAKDGRLSEERIQ
                     QSLHRIARTKAIVEDPPPLDLDRFKALSDEVEKLNSKLNYVYGGTIK"
     gene            4502..>5203
                     /locus_tag="VGD38_01590"
     CDS             4502..>5203
                     /locus_tag="VGD38_01590"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY0726729.1"
                     /translation="MRNSGFLLLVVFILFVMMAPTACRTRSGNAFVIALGDNIRTIDP
                     IGSPSVDAASERVRTLIFNTLVKKNEKFDYVGELASDIKRSDDGLTYTFALRDGVKFH
                     NGNVLSSADVKYTLDLVFASNFAKSASFFEGTGEQKQSYIKSVEAPDQRTVIVTLTKP
                     WVGLLSNLVPIPIIPKDSYESQKTHPLGTGPFKFVRYDNTQQVCDVEAFPDYWDGPAK
                     LQQVRVRVISDMNAMQ"
BASE COUNT         1152 a         1694 c         1362 g          995 t
ORIGIN      
        1 atgacacgca gcacaacgct catccatgct gcccttcaac gcatgacacg acgtacacga
       61 cccattcgtc gccgccaccg caatcggcgg cgtcaaaacc attcgcgccg aagcatgcgc
      121 ctgcgacaac ggcccgggcg agaacgcgtc cgtgtaccaa tacgccgccg caaccgaaca
      181 cgccccaacc aaaatcagcg cccacgtaaa aaacgccgcc ggccaacgcg aaaccaaatc
      241 cgtcgtcggc gtccagttga actgcgcctt tccggttctt cgaccagcct tcggaaacag
      301 cggcgacggc cgcaccatct tccccgcttc acgaatccgc ttgtcccaaa aaatatcaag
      361 cgccttcgtc ccggcaatcg gcgcaggccg cgccttcttc gccttgcctt ccaccggcgc
      421 gaccagcttg tccgtactaa accctggatc gctcaggtcg atctccgacg cccgtgaccc
      481 gatggtcatt tcaaccctaa tgattaaccc gtcgtctgtc gcatcgactt caagccggaa
      541 tggtccaact tcgataacgt cgccgcccgc gagcgcctcg ttatcttcaa ccggcctgcc
      601 gttgagaatg accgggttct tcggccgcag cgagaagagg taatacgcgt ggtcaaactg
      661 cttgatgccc gcctgcaccc gcgacaccga cggatgattc aacaacaact cacactcagt
      721 cagccgccca atcagcagcc cgtcgctgat gattgtgacc ggatcgaaac ccaggtcttc
      781 gcgaacgatg atgtattgat tgttaacggg cattgaagaa aactacttgc acgatgtgta
      841 cgatcatcaa agccaacatc gctgccgtgg aaacaacgtg gatcggaatc cacgagcgca
      901 gcgttcgatg aagcagcagc aacgcctcca cccgccgcaa ggtcaccgca gtttcaaccg
      961 ccgacagcaa cgcttcacgt tcttcatgcg tcgccgttcg cattgtttgc gtcttgaact
     1021 cctcgcgcgc ctgagccagc aacggtttca gttcttcgcg ccgcgagagt tgccgccaaa
     1081 ggaaaccaaa agatcgatag cgcgggtaga cctggtcgcg aatctcgtct ttcaaccaac
     1141 cttcactctg ttcgagaatc gtcgccgcct gtttctctaa ctcatcgcgc cgcgcttcga
     1201 ggtcttcaac cagcagcggc tcgccttcga tccgcgtcat gatccgcggc gacacgatgt
     1261 aagcaatcac gccaataaca ccagacacga ggccgagatc gaagacgacg tacaacaaac
     1321 tcgtcagcag tccgccaaga ttcgatcccg agtgcagcaa cagcaccacc cccgcgacca
     1381 cacccgcgta aacatggacc agcatccaat accgcaacgc gcccgcacgc cgtcgataga
     1441 tttgcttgcg aaacggatac gtcatcacga ccgccacacc gccgaggccg acaatccccg
     1501 tcaaccagcg catcgtcagc cacgcacccg ccatcacacc gtcgtagcca taccgcgcca
     1561 ggccccaggc aacacccgcg atcgcaagca gcgtcgccac aacaccgacg atgtgccaca
     1621 cgcgcgccag cggatcgctc ttgtgaatgt tgcgtccaaa cgcgtgcgtc tgatcgcgaa
     1681 acaccaagcc gcgcgctgtc ttgacctcgt caaagtattc aaccgggttc acgcgcacca
     1741 acgcgccggt cggacagttc tcttcacacg aatacgcctg gcgacgtgcg ccgggcgcgc
     1801 ccggcggatt cagcgacgtg ccttcgcaca ggttgcactt gattgcgacg acgtcatcac
     1861 ccgcgggcgc aaccggctct ggaatgcgaa aactaaacac gcgcgcgagc ttcgacacga
     1921 acccgccgcc attcgcaggc accgcttcac gcggcaccat cgagatcgcg tcgtacggac
     1981 actgcgtcgc gcaatcaaaa catccgatac acgtcacgcg atcgatctcc acgtggccca
     2041 acggatcgcg aaagatcgaa cccgtgggac aaccagtcat acactccgga tccgcgcagt
     2101 gcatacaaac ctgaggcacc agcgcgtgct gcaatcgttt cttaccgatc gcaaccggcc
     2161 gttcgatctg aatcccgcgc ctcaacaaac gtgattgccc atgcaccttg tgacacgcga
     2221 gcgaacagtt gccgcaacga acacacagat ccatgtccat cacgagcacg ttgcggccgt
     2281 cgatgatgcc ggtggcaatc gtctcttccg ccgacttgag cgcgttgatg tctttgatcg
     2341 cttcgagcgt gagcggcgaa gcgtcgtccg cattcgagaa gctggacaac accgtgaaga
     2401 gctgttgtcg aagcgcggga tctgaagaaa acgtactcaa ggagatctcg agcacctctg
     2461 tccgcgccat caggctcgcg ctgtacttcc atttcaccgg ctcattcacg ccttcgagcc
     2521 cgagacagtt accggcgccg agaaaatcaa cgccgatgcc ctcgtccatg ctcatcacga
     2581 cttcaggcgc cgcggcgtca aacctgatcc cgcgtgaacg ccgcaaccag ccagtcttga
     2641 tcaggatcac gcgatcgatc ggatcgcgtt ctttacacag cacgtggttc ttgccgtaaa
     2701 ccatgaagcg cgcggattcc cgcagcgcgt tcatgagccc ctggctcagc ggctgatcgg
     2761 tgtagcgcgt gaggtcttcg agcacgcgcg caaacccgtg cttgcgatac gtctcgtcaa
     2821 gaatctgtcc gaacttcgga agctttcgca gcagacgcaa cgcaggacgc gtcacttcaa
     2881 gcaccactgc ggattgattc aaaggaacag cgacagtagc gttgcgttcg atgccggcga
     2941 gcagagacat ctcgccaaaa cacacgcccg gctcgagctc attcactttt ctgcggctgc
     3001 cattcgagcc gacgtaaaca tcaagcgcgc cttcgacggc gatgtagaaa gtgtttccac
     3061 cccactcgcc ttcgcgcatg atctcctcgc cgccatcgta tgcgagcagt cgcacgtacg
     3121 gtccaacgcg tttgccgttg ccataatcgc gcccttgcag aattacttcg agatccccgg
     3181 catatttctg tttgccgttt tgttcttcga agagttcagc ggtaagagcg agtttctgga
     3241 cggcttcaac gacgcgaccc cggtcggtga tttcgcgtgg catcgatgtc gtttatacat
     3301 ctgttccggt cgtgttacca agcaaaaagc acaagtgtgc taaacttttc gccatcaaaa
     3361 tgctacctga aaaatttcat tcgctttctc tcgaacaaca aatcggacaa ttcttattca
     3421 tcggacttcc gggaacggag ctggatcagc aaacgcgcga tctggtcact gaagtacaac
     3481 cgggcggcgt gatcatcttc ggccgcaacg tcgcgggccc cgaacagttg cgctcactgc
     3541 tcgacggtgt gcgagaactg gttgcggcgc ccttgatcgt cggcatcgat caggaaggcg
     3601 ggctcgtcga tcgcctgcgc cgcattttta cgccgatgcc gtccgcgcgc acgattcggc
     3661 aacacggcga tctcgccgct gcccgcgcgc tcggacgcat caccggcgaa gcgctgcgaa
     3721 tgctcggctt caacatcaac ttcgcgcccg tcatgtcgat catgaccgac gatcgcgacc
     3781 tgctttccaa cggtctctac tcgcgctctt tcggacgttc gcccggtgaa gtgctgggtt
     3841 acacaaccgt ttacatgcgc ggtttgcagg gcacgggctt gctcggctgt ctcaaacatt
     3901 ttccgggcat cggcgcgggc gaagtcgatt cacacgaaga gatgcccgtc gtgcaactct
     3961 cgcatgacga cctgatcgcg caggatctcg cgccgtacat cgaactgttc caacgccgcg
     4021 acgatcgcgt gcgctgcgtg atggtgagtc atggcggttt tcccaacatc gacatcagag
     4081 aagaaacgac cggcggtctg ctcgaacccg cctcgctgaa ttacaacatc gtcaccaaac
     4141 tgctgcgcca ggagctcggc tacaaacatc tcgtcgtcac cgacgatctc gaaatgggcg
     4201 cgatcacccg tcactacgag atcggcgacg cagcggtgcg cgccacactc gccggcgaag
     4261 acatgctcct gatctgcgcc tcacccgaac gcatccgccg cggtcacgaa gcgcttttgg
     4321 aagccgcgaa agacgggcgc ctttcggaag aacgcattca acaatccctg catcgaatcg
     4381 cacgtacgaa agccatcgtc gaagatcctc ctcccctcga cctcgatcgc ttcaaagcct
     4441 tgtctgacga agtagaaaaa ctgaacagca agctcaatta cgtttacgga ggcacaatta
     4501 agtgaggaat agcgggtttc tcctgctggt ggttttcatc ctgttcgtga tgatggcgcc
     4561 gacagcctgc cgcacgcgca gcggcaacgc gtttgtgatc gccttgggtg acaacattcg
     4621 caccatcgat ccgatcgggt cgccgtcggt cgatgcggcg agcgagcgcg tgcgcacgtt
     4681 gatcttcaac acgctcgtca agaaaaacga gaagttcgat tacgttggcg agcttgcttc
     4741 cgacatcaag cgttcagacg acgggctgac gtacacgttc gcgctgcgcg acggcgtcaa
     4801 gtttcataac ggcaacgttc tcagttcggc ggacgtgaag tacacgctcg acctggtttt
     4861 cgccagcaac ttcgcgaagt cggcaagctt cttcgagggc acgggagagc agaagcaaag
     4921 ctacatcaag agcgtcgagg cgccggatca gcgcacggtg atcgtgacgt tgacgaaacc
     4981 gtgggtgggc ttgttatcga acctggttcc gattccgatc attccgaaag acagttacga
     5041 gtcgcagaaa acacacccgc tcggcaccgg tccgttcaag tttgtgcgct acgacaacac
     5101 gcagcaggtc tgcgacgtag aggcgtttcc ggattactgg gacgggcccg cgaaattgca
     5161 gcaggtgcgc gtgcgcgtga tctccgacat gaacgcgatg cag
//
LOCUS       DASWTX010000099         1530 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_239249, whole genome shotgun sequence.
ACCESSION   DASWTX010000099 DASWTX010000000
VERSION     DASWTX010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239249"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(164..1492)
                     /locus_tag="VGD38_01595"
     CDS             complement(164..1492)
                     /locus_tag="VGD38_01595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726730.1"
                     /translation="MGNLSFLSRAEIESLGPPTPEELDETGVSQAFLRDLALKHVASL
                     ATPTTAAVAEKLCLPLALTDELLYQLYREKLIEIRLQSALGQTRYAMLDHGWEQVLRL
                     QAHCGYAGPAPVTLSDYSYMMKLQATPAKPASMAAVRMAFRDLVLPESLLNTLGCAIN
                     SRSSLFLTGLPGTGKTAVAERMNAVISGTLWIPYAIEIDGQIIRIYDSHSHEAVGDQN
                     TPHEYDRRWIRIKRPMVIVGGELTLESTDLVWSEYSRFYEAPFQVKSNGGTLIIDELG
                     RQRVSSTDLLNRWIMPLEKRVDFLTLHSGKKIEVPFEQLVVFSTNLQEKEFADEAFLR
                     RMGYRARLELPAPGAYREIFKRAAALKGLAVDAENISYLLHKYGTEGRPMKCCEPRDL
                     INRMSDICSFEGRPLQLTRALIDAAWGNYFGTAHNFDAFNESPQSQAVAV"
BASE COUNT          349 a          428 c          414 g          339 t
ORIGIN      
        1 acagcaccag aagaaccgtg agacagagag atgtaacgta gcgattaatc attcccttta
       61 aaagagaaca actctcgcgc gaggcaccaa gcgccaccct gtttccagga ctggcttcgt
      121 gcctgcgcga gaattattta cccgaccggt cacttaacca atctcagaca gcaactgctt
      181 gcgattgcgg cgactcattg aacgcgtcaa agttatgcgc cgtaccgaag tagtttcccc
      241 acgcggcatc aatcagtgcg cgcgtcagtt gcagcggtcg tccttcgaag gagcaaatgt
      301 cagacatccg gttgatcaga tctcttggtt cgcagcactt catcggacgg ccttcagttc
      361 cgtatttgtg caacaggtaa cttatgtttt cagcgtcgac tgccaaccct ttcaaagccg
      421 cggcgcgctt gaatatctca cgataggcgc caggcgcggg cagctccaac cgtgcgcgat
      481 atcccatccg ccgcagaaac gcctcgtcgg cgaattcctt ttcctgaaga ttggttgaga
      541 acacgacgag ctgttcgaaa ggaacttcaa tcttcttgcc gctgtgcaaa gtcaaaaagt
      601 cgacgcgctt ctccaacggc atgatccagc ggttcagcag atcggtactc gaaacgcgtt
      661 gccggcccaa ctcgtcgatg atgagtgtgc cgccgtttga tttcacctgg aacggcgctt
      721 cataaaaccg cgagtattca gaccacacaa gatcggtact ctcgagggtg agctcgccgc
      781 cgacgatgac catcgggcgc ttgattcgga tccagcgtcg atcgtattcg tgcggggtgt
      841 tctgatcgcc cacagcctcg tgactatgag aatcgtaaat gcgaatgatc tggccgtcga
      901 tttcgatcgc gtacggtatc caaagagttc ccgagatgac ggcgttcatt ctctcggcca
      961 cggccgtctt tccagtcccc ggcagaccgg tcaggaaaag ggaagagcga gagttgatcg
     1021 cgcagccgag tgtattcagc agcgactcgg gcaacaccag atcgcgaaac gccattcgca
     1081 ccgccgccat cgaagccggc ttggccggtg tcgcctgcag cttcatcatg tagctgtagt
     1141 cgctcagcgt gacgggcgca ggacccgcgt atccacaatg agcttgcaaa cgcaacacct
     1201 gctcccagcc gtggtcgagc attgcatagc gtgtttggcc cagcgcactc tgcaagcgaa
     1261 tttcgatcag cttttcgcga tagagttggt agagcaattc atccgttagc gcgagaggaa
     1321 gacaaagttt ctcagctacg gccgcagtag tgggggttgc taatgaggcg acatgcttga
     1381 gggcgaggtc gcgtagaaac gcctgagaga caccggtttc gtcgagttct tcgggcgtgg
     1441 gtggaccaag actttcgatt tccgcgcgtg ataaaaagct caggttaccc atcctaatct
     1501 ccagttacac gtttgagttt ttgtaataca
//
LOCUS       DASWTX010000100         3285 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_87565, whole genome shotgun sequence.
ACCESSION   DASWTX010000100 DASWTX010000000
VERSION     DASWTX010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3285)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3285)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3285
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87565"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..275)
                     /locus_tag="VGD38_01600"
     CDS             complement(<1..275)
                     /locus_tag="VGD38_01600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726731.1"
                     /translation="MIEEANKLEERDRALEEIAARLGVSAERGKRVAELTSLRVGGAI
                     DWVISPDTEEQAAAIVHELDQAGIGWRPLGSGSNVLADDRDHHYVVL"
     gene            complement(284..1684)
                     /gene="murC"
                     /locus_tag="VGD38_01605"
     CDS             complement(284..1684)
                     /gene="murC"
                     /locus_tag="VGD38_01605"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR01082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008763 - UDP-N-acetylmuramate-L-alanine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEY0726732.1"
                     /translation="MFRRIQHVHFVGIGGIGMSGIAEVLINLGFRVSGSDLKRSGVTD
                     RLQQMGVEIFEGHSAENVGHPHVVVRSTAVRDDNPEIVQAHQRSIPVIPRAEMLAELM
                     RLKPHTVAVAGSHGKTTTTSMVATVLGHAGLDPTMVVGGVVGAFGSNAHLGTSDLMVV
                     EADESDRSFLMLTPTIAVVTNIDREHMDYYHDMDDVRACFASFVNKVPFYGSSVLCLD
                     DPNVQAIIPLLERRRMTYGLSAQADVSAHGIRHDSNFGSSFSVWRGTDVIGEMVLRVP
                     GVHNVYNALAAIAVGFELEVPFEKIAEGLYSFTGAGRRFQAKGEVNGILVVDDYGHHP
                     TEIRATLAAAKLGSGGRRIVVLFQPHRYTRTHDLMQEFARSFNNADVLFLTDIYAASE
                     DPIEGVTAEALTSAIKRFGHKDVNYIGSLDNAAASMVERIQPGDLVLTLGAGTVNRVS
                     EQLLFLLREQSHGQSG"
     gene            complement(1677..2762)
                     /gene="murG"
                     /locus_tag="VGD38_01610"
     CDS             complement(1677..2762)
                     /gene="murG"
                     /locus_tag="VGD38_01610"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: protein motif:HMM:TIGR01133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HEY0726733.1"
                     /translation="MRVLIAAGGTGGHIYPGIAVAQEIMRRDPASKVRFVGTARGLET
                     KLVPKAGFELTLIDSTGLKNVSFVARMKGVVILPKSFVSAGRVIREFRPDVVVGAGGY
                     VSGPVVMMAALMRRPTLVMESNALPGWTNRVLARFVNRAAVSFEQALPYFRGKAVVTG
                     NPVRREFFEIPAKRHEPGKLSLLIFGGSQGARAINEAMVAALPGLKALPVELRIKHQT
                     GPADFEKVKAAYEAAGWKEHTEVCSYIDNMMSDFAAADLVICRAGATTTAELIAAGKA
                     SIMIPFPYAADDHQRKNAEALQAAGAARMIVQQELSGERLIHEIRALVQDPSQLGRME
                     EASRGLARGDAAVAAVDLLEELVGRNV"
     gene            complement(2771..>3285)
                     /locus_tag="VGD38_01615"
     CDS             complement(2771..>3285)
                     /locus_tag="VGD38_01615"
                     /inference="COORDINATES: protein motif:HMM:NF013279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEY0726734.1"
                     /translation="GAGFQVVQSLIAVGSGGVQGLGFAEGKQKMLFLPFAHSDFIFAV
                     IGEELGLVGALAIVALFALFLWRGIRTALLAPDRFGMLLSLGIVTSIVAQALFNISVV
                     LSLVPTKGIPLPFISYGGSSLVPTLAAVGILLNISQHASGSLDVGLFEAATRTPRERK
                     NLNVAAAGRF"
BASE COUNT          734 a         1153 c          808 g          590 t
ORIGIN      
        1 ctcagcacca cgtaatgatg atcgcgatcg tcggcgagca cgttgctgcc ggagccgagt
       61 ggacgccaac cgatacccgc ctggtccaac tcgtgaacga tcgcggcggc ttgttcttca
      121 gtgtccggcg agatgaccca atcgatcgcg ccgccaacac gcaaactggt caactccgcg
      181 acacgcttcc cacgctccgc actcacgccc aacctggcgg cgatctcctc cagtgcccgg
      241 tcgcgctctt ccagtttatt tgcttcctcg atcaccaaaa tccctatcct gactggccgt
      301 gcgactgctc cctcaacaaa aacagcagtt gctcactcac tcgattcacg gttccggcgc
      361 ccagcgtcaa cacgaggtcg ccgggttgaa tacgctcaac catcgacgcc gcagcgttgt
      421 cgagcgatcc gatgtagttg acatccttgt gcccgaaacg cttgatcgcc gacgtcagcg
      481 cttccgccgt aacaccctca atcggatcct cactcgccgc gtaaatgtcc gtcagaaaca
      541 acacgtcagc gttgttgaac gaacgcgcaa actcctgcat cagatcgtgc gtgcgcgtgt
      601 agcgatgcgg ctgaaacaac accacgatcc ttctaccacc cgaacccaac ttggcggccg
      661 caagcgtcgc gcgaatctcc gtcggatgat gaccgtagtc atcaacgacc agaatcccgt
      721 tcacctcgcc cttcgcctgg aaacgccgcc ccgcaccagt gaagctgtac aacccctccg
      781 cgatcttctc gaacggcact tcgagctcaa acccaacggc aatggcggcc agcgcgttgt
      841 aaacgttgtg cacgcccggc acgcgcagca ccatctcgcc gatcacatcg gtgccgcgcc
      901 acacgctaaa gctcgatccg aaattactgt cgtgccggat cccgtgcgcg gaaacgtcag
      961 cctgcgcgct caagccgtaa gtcatacgcc gccgttcgag cagcggaatg atcgcctgca
     1021 cgttcggatc gtcgagacac agaaccgacg aaccataaaa cggcaccttg ttcacaaagc
     1081 tcgcgaagca cgcacgcacg tcgtccatgt cgtggtagta atccatgtgc tcgcgatcga
     1141 tgttcgtcac gacggcgatc gtcggcgtca acatcagaaa cgaacgatcg ctctcgtcgg
     1201 cttcgaccac catcagatcg ctcgtgccga gatgcgcgtt cgagccaaac gcaccgacga
     1261 caccaccgac aaccatcgtc ggatcgagcc ccgcatgacc caacacagtc gcgaccatcg
     1321 acgtggtcgt cgtcttccca tgtgatccgg ccacagcaac agtgtgcggc ttgagccgca
     1381 tcagctcggc gagcatctcc gcgcgcggaa tcacgggaat cgagcgctga tgcgcctgaa
     1441 cgatctccgg attgtcgtcg cgcacggcgg tcgagcgcac gacgacgtgc gggtgcccga
     1501 cattctcagc gctgtggcct tcaaaaatct cgacgcccat ttgctgcaac cgatcggtca
     1561 cacccgaacg cttcaaatca gaacccgaaa cacggaaacc gagattgatc agcacctcgg
     1621 caataccgga cataccgatg ccgccgatgc cgacaaaatg gacgtgttgt atccgcctaa
     1681 acatttctac ccaccagttc ttccaaaagg tctactgcag caacagcagc atctccccgc
     1741 gctaaacctc ggctagcctc ttccatacgg cctagttgag agggatcttg aaccaaagct
     1801 cgaatctcat ggatcaacct ttccccactc aactcctgct gcacgatcat tcgcgccgcg
     1861 ccggccgcct gcaacgcctc cgcattcttg cgttgatgat catccgccgc gtacggaaac
     1921 gggatcatga tcgacgcctt gccggcggcg attaactccg ccgtcgtcgt cgcccccgca
     1981 cggcagatca ccaagtccgc cgcggcgaag tcgctcatca tgttgtcaat gtagctgcat
     2041 acttccgtgt gttctttcca accagcagcc tcgtacgcag ctttcacctt ttcaaaatcc
     2101 gccggaccag tctggtgttt gatccgcaac tccaccggca gtgctttcaa tcccggcaac
     2161 gccgccacca tcgcttcgtt gatcgcccgc gcgccttgcg agccgccaaa gatcaacaac
     2221 gacaacttcc ccggctcgtg tcgcttcgcc ggtatttcaa aaaactcgcg ccgcaccgga
     2281 ttgccggtca cgaccgcttt accgcgaaag tacggcaacg cctgttcgaa cgagaccgcc
     2341 gcacgattta caaaacgcgc gagcacgcgg ttggtccaac ccggcaacgc gttcgattcc
     2401 atcaccagcg tgggccggcg catcagcgcc gccatcatca cgaccggtcc cgaaacataa
     2461 ccacccgcgc caacaaccac gtccggccga aactcccgaa tcacgcggcc cgccgacaca
     2521 aaactcttcg gcaggatcac cacgcccttc atgcgcgcca cgaaactgac gttcttcaaa
     2581 cccgtactat caatgagcgt caactcgaat cccgccttcg gcacgagctt cgtttccaaa
     2641 ccgcgcgcgg tgcccacgaa gcgaactttc gatgccggat cgcgccgcat gatctcctgc
     2701 gcgacagcga tgcccggata aatgtgtccg ccagtgccgc ccgctgcgat cagaactcgc
     2761 atgtcaatga tcagaaacga cccgccgcag cgacgttcaa gttcttccgc tcgcgcggcg
     2821 ttctcgtcgc ggcttcaaac agcccgacgt cgagcgaacc gctcgcgtgc tgcgagatgt
     2881 tcaacaagat gccgaccgct gcgagtgtcg gcaccaatga cgatccaccg tacgaaataa
     2941 acggcaacgg aattcctttc gtcggcacga gcgaaagcac cacgctgatg ttgaagagcg
     3001 cctgcgcgac gatgctcgtc acgatgccga gactcaacaa cattccgaac ctgtcgggcg
     3061 caagcaacgc cgtgcggata ccgcgccaga gaaacaacgc aaacaaagca actatcgcca
     3121 gcgcgccgac gagtcccagc tcttcgccga tcacggcgaa gatgaaatcc gaatgcgcga
     3181 atggcagaaa cagcatcttc tgtttccctt cggcgaagcc gaggccttgt actccgcccg
     3241 aaccgaccgc aatcaacgat tgcaccactt gaaaacccgc gccct
//
LOCUS       DASWTX010000101         2342 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_23136, whole genome shotgun sequence.
ACCESSION   DASWTX010000101 DASWTX010000000
VERSION     DASWTX010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2342
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23136"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1316)
                     /gene="gpmI"
                     /locus_tag="VGD38_01620"
     CDS             complement(<1..1316)
                     /gene="gpmI"
                     /locus_tag="VGD38_01620"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR01307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046537 -
                     2,3-bisphosphoglycerate-independent phosphoglycerate
                     mutase activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HEY0726735.1"
                     /translation="MNKKRGPLALIIIDGWGYSPAREGNAIALAATPFYDELCEKYPQ
                     TLLEAHGSRVGLPAGVMGNSEVGHLNIGSGRVIRMDVSLVDHEIETGEFFGNKVLLGA
                     VEGARDRGKALHLMGLCSDGQVHSSLTHLYALLKLAKDNGLQRVYVHCFLDGRDTPPS
                     SAVNYLSALQKKLAEIGVGEIATVVGRYYAMDRDKRWERTKRAYDLLVHGVGSLAKDP
                     IAAVNESYQRGVTDEFVEPILIVRETAEPVATIKDGDAVVFFNFRPDRARQLTRALTV
                     PGFSEFDVSDRPKVDFVCFTLYDQTFDLPIAFPPRHHRNVLAEVWGATNVHNYRLAET
                     EKYAHVTYFFNGGVEKEFNCEQRLLVPSPKIATYDLQPEMSAFKVTDKFLRGVDEGET
                     DVFVVNFANPDMVGHTGKLDKTIEACQYVDTCLGWITKRVRQARGTT"
     gene            complement(1309..>2342)
                     /gene="eno"
                     /locus_tag="VGD38_01625"
     CDS             complement(1309..>2342)
                     /gene="eno"
                     /locus_tag="VGD38_01625"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000103948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004634 - phosphopyruvate hydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEY0726736.1"
                     /translation="VDRAMIYLDDTKNKSNLGANAILAVSLATARAAAQHLELPLYRY
                     LGGPNARTLPVPMMNIINGGEHADNNVDFQEFMIVPVGAPTFSEALRVGAEIFHTLKA
                     ILKSKNYATSVGDEGGFAPNLSSNEEAIEIVVKAIETAGYRPGADVVVALDPATSELY
                     KDGVYVFKKSDKRKLTSEQMVNFWKQWCKDYPIVSIEDGLAQNDWDGWKLLTDELGKT
                     VQLVGDDLFVTNTEFLQKGIDLGVANSILIKVNQIGTLTETLDCIELAHKNKRTAIIS
                     HRSGETEDPFIADLAVATNAGQIKTGSLSRTDRIAKYNQLLRIEEDLRGAARYPGKKA
                     FHQIEVRFE"
BASE COUNT          474 a          684 c          653 g          531 t
ORIGIN      
        1 gtcgtgccgc gtgcctggcg aacgcgcttc gtaatccagc caagacacgt gtcgacgtac
       61 tggcacgcct cgatcgtctt atcgagtttg cccgtgtgac cgaccatgtc ggggttggcg
      121 aagttgacga cgaaaacatc cgtttcgcct tcatcgacgc cgcgcaagaa cttgtcggtg
      181 actttgaacg ccgacatctc gggttgcaga tcgtaagtgg cgatcttcgg cgaggggacc
      241 agcaaccgct gctcgcagtt gaactccttc tcgactcctc cgttgaagaa gtaagtgacg
      301 tgcgcgtatt tctcggtttc ggcgagacga tagttgtgca cgttcgtcgc gccccaaact
      361 tccgcgagca cgttgcgatg atgacgcggc ggaaacgcga tcggcagatc gaatgtttgg
      421 tcgtacagcg taaagcagac gaagtcgact ttcggacgat cggaaacgtc aaactcgctg
      481 aagcccggta ccgtgagcgc tcgcgtcagt tggcgcgcgc gatcgggacg gaagttgaaa
      541 aagacgaccg cgtcgccgtc cttaatcgtc gcgacgggtt cggcagtttc gcgcacgatc
      601 aaaatcggct cgacaaattc gtccgttacg ccgcgctggt acgactcgtt tacggctgca
      661 atgggatcct tcgcgagact gccaactcca tggaccaaca gatcgtatgc gcgtttcgtg
      721 cgttcccaac gcttgtcacg atccatcgcg tagtaacgcc caaccacagt cgcgatctcg
      781 ccaacaccaa tctccgcaag cttcttttgc aaggcggaaa gatagttaac agccgagctt
      841 ggcggcgtat cgcgcccgtc gagaaagcag tgaacgtaaa cacgctgcag cccgttgtct
      901 ttcgccagct tcagcaacgc gtaaagatgc gttaacgacg agtggacctg cccgtccgag
      961 cacagcccca tcaggtgcag cgctttgccg cggtcgcgcg cgccttcaac cgcgccaagc
     1021 aaaaccttgt taccgaaaaa ctcaccggtc tcgatctcgt gatcgacaag cgaaacgtcc
     1081 atgcgaatca cgcggccgga accgatgttc agatggccca cttcggaatt gcccatcacg
     1141 cccgcgggca aacccacgcg cgagccgtga gcttcgagca acgtctgcgg gtacttctca
     1201 cagagttcgt cgtagaaagg tgttgccgca agagcgatcg cgttgccctc gcgagcgggc
     1261 gaataccccc aaccgtcgat aatgatcagc gcaagcggac cgcgtttttt attcaaacct
     1321 cacctcgatc tgatggaatg ctttcttgcc gggataacgt gcggcgccgc gcagatcttc
     1381 ttcgattcgc agcaactgat tgtatttcgc gatgcgatcc gtgcgtgaca gcgaaccggt
     1441 ttttatctgg cccgcgttcg ttgcgactgc gagatcggcg atgaacggat cctcagtctc
     1501 gccggaacga tgcgagatga tggctgtgcg tttgttcttg tgcgcgagct cgatgcagtc
     1561 gagtgtttca gtgagcgtgc cgatctggtt caccttgatc aggatcgagt ttgccacgcc
     1621 gagatcgatt cctttttgca gaaactcggt gttggtgacg aagagatcgt cgccgacaag
     1681 ttgcacagtc ttgccgagct catcggtaag cagcttccaa ccgtcccaat cgttctgggc
     1741 cagcccgtct tcgatggaaa cgatcgggta gtccttgcac cactgtttcc agaagttgac
     1801 catctgttcg ctggtcaact tgcgcttgtc gcttttcttg aaaacgtaaa cgccgtcttt
     1861 atataactcg ctcgtggccg gatcgagggc cacgacgacg tcggctcccg gccggtagcc
     1921 cgcggtttca attgccttca cgacaatctc aatcgcttcc tcattcgagc tgaggtttgg
     1981 tgcgaagccg ccttcatcgc cgacgctcgt cgcgtagttt ttgctcttca gtattgcctt
     2041 gagcgtgtga aagatctccg cgcccacgcg caacgcttcg ctgaaagtcg gcgcaccgac
     2101 gggcacaatc atgaactcct gaaaatcgac attgttatcg gcgtgttcgc cgccgttgat
     2161 gatgttcatc atcggcactg gcagcgtgcg cgcgtttgga ccaccgagat atcgatagag
     2221 tggtagctcg agatgctgtg cggccgcccg agccgtcgcc agcgacaccg ccaggatcgc
     2281 attggcgcca agattacttt tgttctttgt atcgtcgagg tagatcattg ctcgatcgac
     2341 tt
//
LOCUS       DASWTX010000102         2471 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_957, whole genome shotgun sequence.
ACCESSION   DASWTX010000102 DASWTX010000000
VERSION     DASWTX010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2471)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2471)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2471
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_957"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1130
                     /locus_tag="VGD38_01630"
     CDS             <1..1130
                     /locus_tag="VGD38_01630"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY0726737.1"
                     /translation="IVLIARLVPFTLFAPLAGAFVDRWSRRTVMIVTDFLRVIVALGP
                     LLIRGPQDLWIAYVCTVLLSVFGTFFEAAKNAAVPNITGERDLLAGNALMFSSRFLLM
                     ALGAALGGWTAAYVGYSAAFIINAISFFASAYSVWLVPEAETRQQNVEVVQAQPASLY
                     RGYWSDIREGWSYIVTHAPVAAILAINIIWAIGGGASNLIADRLGALVFAPESGIKPD
                     SAVAALYVAAGMGLFLGMLVARRVGIYFEMKQRTVGFIGWALVIQGILFGLSGVMPSL
                     WSSCALLLVSRMLLGAEFAVQETLLMRLVRDDLRGRVSTTDRAGEMLIWALSTGAAGW
                     SLHWISARTLTVIAGLLSGTAGIVWLILFASGKVRLPRRLR"
     gene            1163..2065
                     /locus_tag="VGD38_01635"
     CDS             1163..2065
                     /locus_tag="VGD38_01635"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY0726738.1"
                     /translation="MRVRPGRRKSVAFFITLGVCLIALAVALSVGWIILNWREVALLV
                     LGIVFFNLLIFGLVLNTTFLIREIRRNEQHDAFINAVTHELKTPVASIRLYLETLKTR
                     DVDEQQRQEFYNIMLADSDRLLKTVEQVLRASRTRHRGRHIAKSAINLGEMVRECLEL
                     ARVQYGLNETHLMYTESPEASNARVSGDVDELRAAFANLLDNAVKYSDEEVRVVVSVS
                     AADDKRVTVRVADQGIGIPQSQLKRIFKRFYRVPGRFMARVKGTGLGLFIVKSVVKKH
                     GGRVYAESAGPGHGSTFTVQLPRV"
     gene            2092..>2471
                     /locus_tag="VGD38_01640"
     CDS             2092..>2471
                     /locus_tag="VGD38_01640"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0726739.1"
                     /translation="MSAVLIVEDEKHLADGLRYNLNAEGYEVDVAGSAEEAFLLLADG
                     AAYDVVVLDVMLPGMDGFALASQLRAQGYFVPILMLTARGRPEDVLRGFEAGADDYLP
                     KPFELSVLLARINALLRRREWFQK"
BASE COUNT          415 a          607 c          858 g          591 t
ORIGIN      
        1 cgatcgtgct cattgcgcgg ctcgtgccct tcacgttgtt tgcgccactt gccggtgctt
       61 tcgtggatcg ctggtcgcgg cgcacggtga tgatcgtgac cgacttcctg cgcgtgatcg
      121 ttgcgcttgg acctttactg atccgtggac cacaggattt gtggatcgcg tatgtgtgca
      181 cggtgttgct ctcggtcttc ggcacgttct tcgaggccgc caagaatgca gccgtgccga
      241 acatcacggg cgaacgcgat ctgctcgcgg gcaatgcgct gatgttctcg tcgcgcttct
      301 tgctgatggc gctgggagcg gcattgggtg gttggaccgc ggcgtacgtt ggttattcgg
      361 cggcgttcat catcaacgcg atctcgtttt ttgcttcagc gtactcggtg tggctcgtgc
      421 ctgaagcaga gacacggcaa cagaacgtcg aagtcgtgca agcgcaaccg gcgagtctct
      481 accggggtta ctggtccgac atacgcgaag gctggtcgta catcgtgacg catgcgcctg
      541 ttgccgcgat tctcgcgatc aacatcatct gggccatcgg cggtggcgcg agcaatctga
      601 tcgcggaccg gttaggcgcg ctggtctttg cccctgagag cgggatcaaa ccggattcgg
      661 ccgtggccgc gttgtacgtt gcggccggca tgggactgtt tctgggaatg ctggtcgcgc
      721 gccgcgttgg catctacttc gaaatgaagc aacggaccgt cgggttcatc ggctgggcgc
      781 tggtgatcca gggaatcctg tttggcttgt cgggcgtgat gccctcgttg tggtcgtcgt
      841 gtgcgttgtt gctggtttcg cgtatgttgc tgggcgcgga gtttgccgtg caggaaacgc
      901 tgttgatgcg tttggtgcgt gatgatctgc gcgggcgagt ttcgacgacg gatcgagccg
      961 gtgagatgtt gatctgggcg ctgtcgaccg gcgccgcggg ttggtcgctg cattggatct
     1021 cggcgcgcac gctgacggtg attgcgggtt tgctttccgg cacggcggga atcgtgtggc
     1081 tgattttgtt tgcgagtgga aaggtgcgcc tgccgcgaag gctgcggtga ttcactaaag
     1141 gttcgctgtt acaatcatcc tgatgcgcgt tagaccaggc cgtagaaaat ccgttgcgtt
     1201 cttcatcacg ttgggcgtgt gcctaatcgc gctcgcggta gcgttgagcg tcggctggat
     1261 tattctcaac tggcgcgagg tggcgttact tgttttagga atcgtctttt tcaatctgct
     1321 gatctttggg ctggtgctga acacgacgtt cttgattcgc gagatacggc gcaacgagca
     1381 gcacgacgcg tttatcaatg ccgtcacgca tgaactaaaa acgccggtgg cgtcgatccg
     1441 gctttatctc gagacgctta agacgcgcga cgtcgacgag caacagcggc aggagtttta
     1501 caacatcatg ctcgccgata gcgatcggtt gttgaagacg gtcgagcagg ttttgcgcgc
     1561 gagcaggacg cggcatcgtg gacggcacat tgcgaagtcg gcgatcaatc ttggcgagat
     1621 ggtgcgcgag tgtttggaac tcgcgcgcgt gcagtatggg ttgaatgaaa cgcatttgat
     1681 gtacacggag tcgccggagg cgagtaacgc gcgcgtgtcg ggtgatgttg acgagctgcg
     1741 cgcggcgttt gcgaacctgc ttgataacgc ggtgaagtat tcggatgaag aggtgcgtgt
     1801 ggtggtttcg gtttcggcgg ctgacgacaa gcgcgtgacc gtgcgtgtgg ctgaccaggg
     1861 gatcgggatt ccgcagtcgc aactgaagcg cattttcaaa aggttctatc gtgtgcccgg
     1921 gcggttcatg gcgcgggtga agggaacggg attgggattg tttattgtga agtcagtggt
     1981 gaagaaacat ggcgggcgcg tttacgcgga gagcgccgga ccgggacacg ggagcacgtt
     2041 cacagttcag cttccgcgag tctgagccac ggaaaatacg gatattaata gatgagcgcg
     2101 gttctgatag ttgaagacga gaagcacctg gcggatgggc tgcgttacaa cctcaacgcc
     2161 gaagggtatg aggttgatgt ggcgggcagc gcggaggagg cgtttctgtt gctcgcggat
     2221 ggcgcggcgt atgacgtcgt cgtgctcgac gtgatgttgc ccggcatgga cggctttgcg
     2281 ctcgcttcgc aattgcgcgc gcagggatac ttcgttccga tcctgatgtt gacggcgcgc
     2341 gggcggcccg aggatgtgtt gcgcggtttt gaagcgggcg ccgacgacta cctgcccaag
     2401 ccgttcgaac tgtcggtgtt gctggcgcgc atcaatgcgt tgttacgccg gcgcgagtgg
     2461 tttcaaaaag a
//
LOCUS       DASWTX010000103         1661 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_109857, whole genome shotgun sequence.
ACCESSION   DASWTX010000103 DASWTX010000000
VERSION     DASWTX010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109857"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..575
                     /locus_tag="VGD38_01645"
     CDS             <1..575
                     /locus_tag="VGD38_01645"
                     /inference="COORDINATES: protein motif:HMM:NF019887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAD hydrolase family protein"
                     /protein_id="HEY0726740.1"
                     /translation="GRGAGADALLSDDHEGLGVLVYDHLSGDNVAVHRYIDWAIRLHG
                     DEEGRNAVRQVDSLEDYLDHEPIHLAFSGRCGAMDQLAELLDSELGSSVKVLSTKYLE
                     QDFTLLDVVNPSASKGAGVAAAAVELNIGAEGIMAIGDNYNDLEMLLFAGTGVVMANA
                     PLTLREIPGLHPTASNTEDGVALAIEQFIL"
     gene            610..1101
                     /locus_tag="VGD38_01650"
     CDS             610..1101
                     /locus_tag="VGD38_01650"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0016018 - cyclosporin A binding [Evidence
                     IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEY0726741.1"
                     /translation="MANRTAVIQTNKGTIRAELLESDAPKTTENFITLAEKGYYDGII
                     FHRVIKNFMIQGGDPTGTGRGGQSAWGGRFDDEINTRSEVYQRGYKAGTMAMANAGPN
                     TNGSQFFIMHVDYPLPPAYTIFGRVIEGQDVVNAIATSATDRNDRPVEEVRMEKVTIE
                     TTD"
     gene            complement(1098..>1661)
                     /locus_tag="VGD38_01655"
     CDS             complement(1098..>1661)
                     /locus_tag="VGD38_01655"
                     /inference="COORDINATES: protein motif:HMM:NF020132.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEY0726742.1"
                     /translation="EPIFQDAKVAAAKTGMLPTAEIVAEVARLFREEDLPAPVVDPVM
                     VSTSGHDLIGDPAFQILKNELLLVSRVVTPNIPEAERLAGFSIHSEADMRRAAEAIKS
                     LGARAVLVKGGHRLTSQADAVDILLDETGNFVEFREEYIDVGEIHGSGCTLSAAIAAA
                     LGKGMSLEAAVGAAKKYLTDQIRLLSA"
BASE COUNT          392 a          451 c          474 g          344 t
ORIGIN      
        1 tcggacgcgg cgccggcgcc gacgcgttgt tgagcgacga tcacgaaggt ttgggcgtgc
       61 tcgtttacga tcatttgagc ggcgataacg tcgcggtcca tcgttacatc gactgggcca
      121 tacgcctcca tggcgacgaa gaaggccgaa acgccgtccg gcaggttgac tcactcgaag
      181 actacctcga tcatgaaccc attcatctcg cgttttcggg acggtgcgga gcgatggacc
      241 agctcgccga gttgctcgac tcggagctgg gatcgagtgt gaaagttttg agcacgaaat
      301 atctcgagca ggatttcaca ttactcgatg tggtgaatcc gtcggcttcg aaaggcgcgg
      361 gcgtggcagc ggccgcagtg gagttgaaca tcggcgccga agggatcatg gccatcggcg
      421 ataactacaa cgatctggag atgctactct tcgccggcac cggcgtggtg atggcgaatg
      481 cgccgctaac gttgcgcgag attccgggtt tacatccgac tgcgtccaac accgaagacg
      541 gcgtggcatt ggcaatcgaa caattcattc tgtgacgaaa atttatttgc gactggcaag
      601 gagacaaaca tggcaaatcg aacggcagtg attcagacaa acaagggcac cattcgcgcc
      661 gagctgttgg aatcggacgc accgaagacc accgagaact tcatcacgct ggccgaaaag
      721 ggttactacg acgggatcat ctttcaccgc gtgatcaaaa acttcatgat ccagggcggc
      781 gacccgaccg gcaccggacg cggcggacaa tcagcatggg gcggacgttt tgacgacgag
      841 atcaatacgc ggtctgaggt ttatcagcgc ggttacaaag cgggcacgat ggcgatggcg
      901 aatgctggtc cgaacacgaa tggatcgcag tttttcatca tgcacgtgga ttatccactg
      961 ccgccggctt atacgatctt cgggcgcgtg attgaaggac aggacgtggt gaacgcgatc
     1021 gcgacgtcgg ccacggatcg gaacgatcgt ccggttgaag aagtcaggat ggaaaaggtc
     1081 actatcgaaa ccacagatta agcggatagt aaacggattt gatccgtgag gtactttttc
     1141 gcggctccga ctgcagcttc caacgacatc cctttgccca aagctgctgc gattgcggct
     1201 gacagcgtgc agccggagcc gtgaatttct cctacgtcga tgtattcctc acgaaactcc
     1261 acgaagtttc cggtttcatc gagaagaata tcgacggcgt ccgcttgcga cgtcagcctg
     1321 tgcccgcctt ttactaaaac tgcacgagcg ccaagagatt tgatcgcttc cgccgcgcga
     1381 cgcatgtctg cttcagagtg aattgaaaaa ccagcgagac gttccgcctc gggaatgttg
     1441 ggcgtcacca ctcgagacac cagtaacagt tcatttttaa gaatctgaaa agccggatct
     1501 ccgatcagat cgtgtcctga cgtcgagacc atcaccggat cgaccaccgg cgccggtaag
     1561 tcttcttcac gaaacagacg cgctacttca gcaacgatct ccgcagtcgg caacatgcct
     1621 gttttcgctg cagcaacctt cgcgtcctga aaaatcggtt c
//
LOCUS       DASWTX010000104         2506 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_239312, whole genome shotgun sequence.
ACCESSION   DASWTX010000104 DASWTX010000000
VERSION     DASWTX010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2506
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239312"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1077
                     /locus_tag="VGD38_01660"
     CDS             <1..1077
                     /locus_tag="VGD38_01660"
                     /inference="COORDINATES: protein motif:HMM:NF025295.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunoglobulin domain-containing protein"
                     /protein_id="HEY0726743.1"
                     /translation="TNFVNGVSTATFTAGPTPGSGSADVTADNETVTASVTIDTNNTT
                     DPADQVVCEGDTATFTTTASGPGTITFVWKKGATVLNNGDLGGRVTINNGATTSTLTI
                     TGAQLGDADTYTVEATGECNTATQSATLTVNAATTTTDPADQTVCQGTDATFSTIASG
                     TGPFSYAWTLDGNPVGGNSPSVTIPTGSLSIGNHTVTVTTTGSCGSATQSATLTVSAG
                     TPTITLSSNSATMWPPNHQYQTFNVSDFVASANAGCGGGDITNSVVIQKVSSDEPEEN
                     PAGADGNTLNDIVIAPDCKSVQLRRERDGNLNGRVYTITFKVTDSFGNTATATVKVSV
                     PKNNNGTAIDNGAAAGYTVNSLCP"
     gene            1125..1514
                     /locus_tag="VGD38_01665"
     CDS             1125..1514
                     /locus_tag="VGD38_01665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726744.1"
                     /translation="MRITLRKSSPLFTSLAVLGMFIGMMAFGTLLSKAHAPTTAITIV
                     NNSNREIRHVYLSAPDQNNWGSDQLVNSVIAPNGGSFTISDANCGGSNVKVIAEDNEG
                     CFMYQVVACSGSVSWTITNDTSRDCGN"
     gene            1922..>2506
                     /locus_tag="VGD38_01670"
     CDS             1922..>2506
                     /locus_tag="VGD38_01670"
                     /inference="COORDINATES: protein motif:HMM:NF013959.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726745.1"
                     /translation="MKWLAIIVVVAVVPFALYVRVKSEDSAKFAKTEGPVSVTKRAKG
                     HVTVQAAGRGKPFLNFQDGREMSITYRGEQAAVAALQSGGAQGRALASADFDRNGTPD
                     VVVGYGYNGSGIITVQRGNPDAYAPASDSVLVRMQQGYNPESLLPGADVYAVPVAADF
                     LVTGNFTKDTDKDVVFAAKGGGLYLMEGNGAGKLG"
BASE COUNT          576 a          696 c          701 g          533 t
ORIGIN      
        1 acgaacttcg ttaacggtgt ttcgacggcc acattcacgg ccgggccgac accgggatcg
       61 ggcagcgctg atgttacagc cgacaacgag accgttacgg cttccgttac catcgatacc
      121 aataacacga ccgatccggc agaccaggtt gtttgtgaag gtgacacggc aacgttcacc
      181 acgacagcca gtggcccggg cacgatcacg ttcgtgtgga agaagggcgc cactgttctg
      241 aacaacggcg acctcggcgg acgcgtcacg atcaacaacg gcgccactac gagcacgctg
      301 acgatcaccg gcgcacagct cggcgacgca gatacctaca cggttgaagc gaccggcgaa
      361 tgcaacaccg ctacgcagag cgccacgttg accgtcaacg cggcgaccac aacaactgat
      421 cccgcggacc agacggtttg ccagggcacc gatgcgacat tctcgacgat cgcatcaggc
      481 actggtccat tctcctatgc gtggactctt gacggtaatc cggtcggcgg aaacagcccg
      541 agcgtcacca ttccgacggg ttcgctctcg attggcaacc acacggtaac ggtaacaact
      601 accgggtcct gcggctctgc tacacaaagc gcaaccctga cggtgagcgc cggcactccg
      661 acgatcacct tgagctctaa ttcagcgacc atgtggccgc cgaaccacca gtaccaaacg
      721 ttcaacgtga gtgactttgt cgccagtgct aacgcaggat gtggcggcgg agacatcacg
      781 aacagcgtgg ttatccagaa ggtgagcagt gatgaacccg aggaaaaccc ggctggcgcg
      841 gacggcaaca cgctgaacga catcgtgatt gcgcccgatt gcaagtcggt ccaattgcga
      901 cgcgaacgtg acggcaacct taatggacgc gtctacacga ttacattcaa ggttaccgat
      961 tcgttcggca acacagcgac cgcaacagtt aaggtctctg tgccaaagaa caataacggc
     1021 acggcgatcg ataacggcgc cgctgcggga tatacggtaa acagcctctg cccataaccg
     1081 gcgggtggtc catgttcaga taagtttgat gaaaggtgac tgacatgaga attacgttac
     1141 gcaagtcgag ccctctgttc acgtctctcg cggtgctggg tatgtttatc gggatgatgg
     1201 cctttggtac gttgttgtca aaggcccatg ctccaacgac ggcgatcacg attgtcaaca
     1261 actccaatcg tgagattcgt cacgtctatc tttcagcacc ggaccagaac aactggggtt
     1321 cggaccagct cgtcaattcg gtgatcgcgc cgaatggcgg atcgttcaca atcagcgacg
     1381 caaactgcgg cgggagtaat gtcaaggtaa tcgcagaaga taatgaaggc tgcttcatgt
     1441 atcaggtcgt cgcgtgctcg ggaagtgtca gttggaccat aaccaacgac acctcgcgcg
     1501 attgtggtaa ctgaacattt gatgttcaaa atctgtggtg cggggcgcgg gtgaataacc
     1561 cgtgcccctt tcttttcccc caaagatttg cttgtgaaat tagcgcttgc agtaccagtt
     1621 tcggcgtcat cgaagaagtt gtttaacctt gttcgtaggt gtttcctgcc atcaacgagg
     1681 tacagcttta tgccattgac gctgtcgcgt tacgcaagta aagtatcgca gtccctaaag
     1741 cggttcccat cggatttttc ctactttctt gacgactgct cagtcaacct ccgaaggcta
     1801 accgtactag ttcctaaata tctcagtttg cgcgcttgct cccaggagag ttcctatgcg
     1861 tcctctatcg aatcagactc accagtctaa gtttcccttt tttttaacta tcaaagccgc
     1921 tttgaagtgg ctcgctatca ttgtggtagt cgctgttgtc cccttcgcgc tctatgtaag
     1981 agtgaagtca gaagactcgg cgaagttcgc taagacggag ggacctgtct ccgttaccaa
     2041 gcgcgccaaa gggcacgtta cggttcaggc cgcaggacgc ggcaagcctt tcctgaattt
     2101 ccaggacggg cgcgagatga gcatcaccta tcggggtgag caagccgctg tcgctgcttt
     2161 gcaaagcggc ggcgcgcagg ggcgggcatt agcctccgcg gatttcgatc gtaacggaac
     2221 acccgatgtg gtggtcggct acggttacaa cggctcggga ataatcacag ttcaacgcgg
     2281 caacccggac gcatacgcac cggccagtga ttcggttttg gtgcgtatgc aacagggtta
     2341 caacccggaa tcgttgttgc cgggtgcgga cgtttatgcc gtgcctgtgg ccgccgattt
     2401 tctcgtgacg ggaaacttca cgaaggacac tgacaaggat gtggtgtttg ccgcaaaagg
     2461 cggcgggctc tacctgatgg agggaaatgg cgccggcaag cttggc
//
LOCUS       DASWTX010000105         3845 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_66426, whole genome shotgun sequence.
ACCESSION   DASWTX010000105 DASWTX010000000
VERSION     DASWTX010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3845)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3845)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3845
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66426"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..433)
                     /locus_tag="VGD38_01675"
     CDS             complement(<1..433)
                     /locus_tag="VGD38_01675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726746.1"
                     /translation="MRFAIASLIFVLSLASATPTNAKTLHHFVFFGMDRERLRTTQSF
                     LDTKAFEGAQVAYFWRQLEPGKDQYDFSLIREDLAFLKQHGKKLWVQIQDVSFSERRT
                     PVPKYLLQDPQYHGGANRQYKFKDDNEHEATPAGWAARRWDP"
     gene            674..2167
                     /locus_tag="VGD38_01680"
     CDS             674..2167
                     /locus_tag="VGD38_01680"
                     /inference="COORDINATES: protein motif:HMM:NF025871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing redox enzyme family protein"
                     /protein_id="HEY0726747.1"
                     /translation="MNNSGQTSLAIAPAPGETAPLRETASSFEVTWPGTLWPPEETKR
                     LIDLYAARPLFDDTSEQLIRDNPYCRPIDRESTQRFDFNQTVNRSGSLGASALAAHRM
                     LLNIYETDLIFLPDKNFAARKNDFASYYSNDNKLLGELIRPTLEAHVFNFLEQEINVT
                     GNWTFEAVKTYLQDLVAKHEQSELEMCEAIVSSADPDRAGRALLLQLACDFLSEASAS
                     SRNILGKYGAIQSEFFKIVIDDYGYGVHPAKHSTLYENTLATADLLSEVHAYWKFYLS
                     STFALANYYHYVSRDHSKYFRAIGAIAVAESMFSHTCREISRMLRTVFGEKIDTYYFD
                     EHYHIDAHHGRMAFEHVVAPAIEQHGNGVIPDIIRGMEELQLLTAIADEDFIAQVRFF
                     DAVPDLKSTAEAIHTRIVEGSLQPPAITHLGTRTQPFITRVNNQDQLYAIQSGTLDLV
                     LSPDQSVRLDRGDVMIVPRQRLHGPAVVSEECCYRVYDLEDYQSCLS"
     gene            2155..2490
                     /locus_tag="VGD38_01685"
     CDS             2155..2490
                     /locus_tag="VGD38_01685"
                     /inference="COORDINATES: protein motif:HMM:NF012575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEY0726748.1"
                     /translation="MLVVTFDPEQFNFLTAGESSYFLLRLPDGSLTLYNDRCDHRGGP
                     LHLGRWDDLGQCLVCPWHATKYSAKVLRNRGTPLIERSGRVTAVLDVPPSTPVQLVKK
                     AILAQPNSC"
     gene            2506..3582
                     /locus_tag="VGD38_01690"
     CDS             2506..3582
                     /locus_tag="VGD38_01690"
                     /inference="COORDINATES: protein motif:HMM:NF018076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEY0726749.1"
                     /translation="MHPTLVTVSEPTEIEPFETRLSRVRIADLLARGETHLENKQFAD
                     ALDCFELALCLEPENAVALKGRNQAHCQIIPRWHFEMLNDAQRNAVFEKALANAINED
                     TIVLDIGSGTGLLAMMAARAGAKETITCEMVGPLAELARETIAHNGLDGRIVSLNQKS
                     TSLVVGKHMPRKANLLVTETVDGALLGEGIVPTIAHAKANLLTEDAQIIPSGATVYGM
                     VIESPRLRNFNSVQMAAGFDVSLINRYATAGSFPMRIANFAHTPLTDPFEVFHFDFVN
                     GTILPEQKTIHVRAQRDGTGQCIAFWFDMQLDETLSISNEPGSTGHWEQAVQCLEPEV
                     PTRAGETIAIEAAHNCHQVSFKMS"
BASE COUNT          862 a         1141 c         1030 g          812 t
ORIGIN      
        1 ccggatccca acgccgtgcc gcccagccag caggggtggc ctcgtgctcg ttatcgtctt
       61 tgaatttgta ctgacggttg gccccgccgt gatattgcgg gtcctgcagg aggtacttcg
      121 gcaccggagt cctgcgttcg ctaaacgaca cgtcctgaat ctgcacccac agtttctttc
      181 cgtgttgctt cagaaaggcg aggtcctcac gaatcaagct gaagtcgtac tggtctttgc
      241 cgggttcgag ctggcgccag aaataagcga cctgcgcgcc ttcgaaagct ttagtgtcga
      301 gaaatgactg cgtcgtccgc agtctctcgc ggtccatacc aaagaacaca aagtgatgaa
      361 gcgtcttcgc attagtgggc gttgccgagg ccagggacaa gacaaaaatt aaagaagcaa
      421 tagcgaatct cattcgatca cctccgtaga agccggtacg tactctcgcc aacaattgtt
      481 gacacaaact gtttaaggtg gaatactcac cagcgcacaa tataacctct agtcctcgga
      541 cttcttgtcc caaatggcgg tagcttgtca tagacaagca actccgccta ccgtaaagct
      601 tcacccccaa ttcattaagg cgcaccacga tcactgcacg ctcaacctca agttcaatcg
      661 taaaggattt tgcatgaata attctggtca gacgtcgctc gctattgctc cggcacccgg
      721 tgagacagcc ccattgcgcg aaacagcgag ttcgttcgaa gtaacctggc ccgggacact
      781 gtggccgccg gaagaaacca aacgtttaat cgatctctat gcagcgcggc ctctgtttga
      841 cgacacttcc gagcagctaa ttcgcgacaa tccctactgc cggccgatcg atcgcgaaag
      901 cacgcaacgg ttcgacttca accaaaccgt gaacagatcg ggatctctcg gcgcgagcgc
      961 gctcgccgcg caccgcatgt tgctgaacat ttacgagacc gacctgatct ttctgccgga
     1021 caagaatttc gcagctagga agaacgactt cgccagctac tactcaaacg acaacaaact
     1081 gctcggcgaa ctgattcgtc cgacgctcga agctcacgtg ttcaatttcc tcgaacagga
     1141 aatcaacgtc accggcaact ggacgttcga agcagtcaaa acgtacttgc aggacctcgt
     1201 tgcgaagcac gagcaatccg agctcgagat gtgtgaggca atcgtttcct cagccgatcc
     1261 ggaccgcgcg ggccgtgcgt tgctgctcca gttggcttgt gactttctca gcgaagcgtc
     1321 agcgtcgtcg cgcaacatcc tcggcaagta cggcgcgatc cagtcagagt tcttcaagat
     1381 cgtgatcgac gattacggtt acggagttca tccggccaag cacagcactt tgtacgagaa
     1441 cactctcgcg accgctgacc tactctccga agtccacgct tactggaagt tctatctctc
     1501 gtcaaccttc gcgctcgcca actactacca ctacgtgtcg cgcgatcaca gcaagtactt
     1561 ccgggccatc ggcgccatcg ctgtcgcgga gtcgatgttc tcgcatacgt gccgcgagat
     1621 ctcgcgaatg ctgcgcacgg tctttggcga gaagatcgat acctactact tcgacgaaca
     1681 ctaccacatc gacgcgcatc acgggcggat ggcgtttgag cacgtcgtcg cgccggcgat
     1741 cgaacagcac ggcaacggcg ttattcccga catcattcgc ggaatggaag agttgcaact
     1801 gctcacggcc atcgccgatg aagacttcat cgcacaagtg agattcttcg acgcggttcc
     1861 ggatctgaag tcgacggctg aagcaattca cacgcggatt gtcgaaggca gcttgcagcc
     1921 gcccgcaatt actcacctcg gcacgcggac tcagccgttc atcacgcgcg tcaacaatca
     1981 ggaccagctt tacgcgatcc aatcgggcac gctcgatctc gtcctcagcc cggaccagag
     2041 cgtgcggctg gatcgtggcg acgtcatgat cgtcccgcgc caacggctgc atggaccagc
     2101 ggtcgtttcc gaagagtgtt gttaccgcgt ttacgacctc gaggactatc agtcgtgctt
     2161 gtcgtaactt tcgatcccga acagttcaac ttcctcaccg ccggagagag ttcctacttt
     2221 ctgctccggc ttcccgacgg aagcctgacc ctctacaacg atcgctgcga tcaccgcggt
     2281 ggtccattgc atctcggacg ctgggacgac ctcggccagt gtctcgtctg tccctggcac
     2341 gcgacaaagt attccgcgaa agtgctgcga aatcgcggaa cgccgttgat tgagcgatcg
     2401 ggtcgcgtga cagccgtgct tgatgtcccg ccgtcaacac cggttcagct ggtcaagaaa
     2461 gcgatactcg cgcagcccaa ttcctgctaa gtcgaggata ttgccgtgca tccaacacta
     2521 gtcacagttt ctgaacccac tgaaatcgaa ccgtttgaga ccaggctgag ccgcgtcagg
     2581 attgcggatc tgctggcgcg cggtgaaaca cacctcgaga acaaacagtt cgccgatgcg
     2641 ctcgactgtt ttgagttggc cctatgtctc gagccggaga atgccgtagc gctgaaggga
     2701 cgtaaccagg ctcattgcca gatcatcccg cgctggcatt tcgagatgct caacgacgct
     2761 caacgtaacg cggttttcga aaaggcgctc gcgaatgcca tcaacgaaga cacgattgtt
     2821 ctcgacatcg gttccggcac tggtttgctt gcgatgatgg cggcgcgtgc cggagcgaaa
     2881 gagacgatta cgtgcgagat ggttggacca ctggcggagt tagcgcgcga gaccatcgca
     2941 cacaacgggc tagacggccg catcgtgtcg ctgaatcaga agtcgacgtc gctggtcgtc
     3001 ggtaagcaca tgccccgtaa agcgaacctg ctcgtcactg agacggttga cggcgcgttg
     3061 ctgggagagg gcatcgttcc gaccatcgct cacgccaaag cgaatctgtt gacggaagac
     3121 gcgcagatca ttccaagcgg cgcaacggtt tatggaatgg tgatcgagag cccgcgtctg
     3181 cgcaatttca actcggtgca gatggctgcc ggcttcgacg tcagtcttat caatcggtac
     3241 gcgactgcgg gaagctttcc gatgcgaatc gcgaattttg ctcacacacc gctcaccgat
     3301 ccgttcgaag tctttcactt tgactttgtg aacggcacga tccttcccga gcaaaagacg
     3361 attcatgttc gcgcacaacg cgacggtacg gggcagtgca tcgctttctg gttcgacatg
     3421 cagctcgacg aaacactctc gatctccaac gagcccggct cgacgggtca ttgggaacag
     3481 gcggttcagt gcctggagcc ggaggttccg acccgcgccg gtgaaacgat cgcgatcgaa
     3541 gccgcgcaca attgtcatca ggtctcattc aagatgagtt aacgttctcc tcgacagttc
     3601 aactattcga agggcgccgt tctggcgccc ttttttcgtg ccacagataa cacggacgaa
     3661 cacggacagg accacattaa tgatttaata tgcagccgtg atcggccaga ccgtttctca
     3721 ctatcgcatt ctcagcaaac tcggcgaggg tggcatgggc acggtctacg tcgcggaaga
     3781 cacggtgctc ggacggcgag tcgcgatcaa gtctctgaag atcgcttccg ttcccggtca
     3841 gaagc
//
LOCUS       DASWTX010000106         2154 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_239338, whole genome shotgun sequence.
ACCESSION   DASWTX010000106 DASWTX010000000
VERSION     DASWTX010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2154
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239338"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1986
                     /locus_tag="VGD38_01695"
     CDS             <1..1986
                     /locus_tag="VGD38_01695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726750.1"
                     /translation="KTKKLLDKAARNANPLNSEITVSGSVHVQAVLIPRVDSEKIFGK
                     EIANNYAVIQLIVGNKSPAAALIIHGVFIDYREWPLSGLPPAEMVVERSNNKYQAASV
                     PSQVASEEYRVVRGQLLDAQMHTFRNTFLRWLTFAGNLAGAYTFALNEQGIIKGIAAA
                     TGVGIPGVATAWPDRTVEQLNRVSDLGFRANKLVPKESSEIIVCFFPIDRFLTPGFRK
                     LFLRSPALFFAPLTMLVDKSIESDARALVGDLVRGTGMSFEDLKRAMPCYMKVRHPEP
                     GRIGYDVCLAEMGLEVGHDPVTKQESLRAISARDAKGNVAKNNLGKPQVDPGFYKFMA
                     LEFIGNVSLNRVTVTVDGTMAVDVKSIAAGIHDVSIDKVADCGDTGNECLWTNTTAGG
                     GVRTGVIRGAYLSGGKVKLAEADGVIISDLTTLDGSTDNELRFSFKLHAPVRNGAKLH
                     FTVEKPAITTGGRPLESNTWEYLVSYPVSAPAVTSIAVDNAATPTKLTVKGRGFKAKP
                     LVISLLPQAGDSVKVTPTANTVTENSFEVVLPTGDKKLHAGCWQVQVEAGGLTTNVSD
                     WFAIPPDPSLDSAERTDKFIFVKGKDLIDFSACGGQQISFKALKEDNTGATDLEVKDW
                     NNGAPVLSLPDKVKEGKWKIQVIKGAKKSEKPLTVRP"
BASE COUNT          518 a          582 c          612 g          442 t
ORIGIN      
        1 aagaccaaaa aacttctcga caaagccgcc aggaatgcaa acccattgaa cagcgagatc
       61 acggtcagtg gcagcgttca cgtgcaggcc gtccttattc cacgcgtcga ctctgaaaag
      121 atcttcggca aagagattgc caacaactac gccgtcatcc agttgatcgt gggcaacaag
      181 agcccggcgg ccgcgctgat tatccatgga gtttttatcg actatcgcga atggccgcta
      241 agcggacttc cgcctgccga gatggtcgta gagaggagta ataataaata tcaggcggcc
      301 agcgtcccga gccaggtcgc gagtgaagag tatcgggtcg ttcgaggaca actgctcgac
      361 gcccagatgc acaccttcag gaacactttt ctgcggtggt taacattcgc gggcaatctc
      421 gccggggcct atacgtttgc gttgaatgag caaggaatca taaagggaat tgcggctgcg
      481 accggtgtcg gcattcccgg cgtcgccacg gcctggcccg atcgaactgt ggaacaactc
      541 aatcgcgtca gcgacctcgg atttcgcgcc aacaaactgg tcccgaaaga gtcgtcggaa
      601 attatcgtct gtttcttccc catcgatcgc tttctgacgc cgggctttcg caaactcttc
      661 ttgcgatcgc ccgcgctttt ctttgcaccg ctgacgatgc tggttgacaa gagtatcgaa
      721 tctgacgcca gagctttagt tggagacttg gttcgcggaa ccgggatgtc gtttgaggat
      781 ttgaaaagag cgatgccgtg ctacatgaaa gtgcgtcatc ccgaaccggg ccggattggt
      841 tacgacgtct gtttggcgga aatgggtctt gaggttggtc acgacccggt caccaagcag
      901 gaatcgttga gggccataag cgcccgagat gcgaagggca acgtggcgaa gaacaacctg
      961 ggtaagccac aggtcgatcc gggattctac aaattcatgg cgcttgaatt catcggcaac
     1021 gtcagcctca atcgcgtgac ggtcaccgtc gacggcacga tggccgtaga cgttaagtcg
     1081 attgctgccg gaattcacga cgtctcaatc gacaaagtcg ccgactgcgg cgataccgga
     1141 aacgagtgtc tatggaccaa cacgacggcc ggcggcggcg tgcgcacggg cgtgattcgc
     1201 ggcgcttatc tcagcggcgg gaaagtaaag cttgccgaag cagacggcgt catcatctcc
     1261 gatctcacga cgctcgatgg atctacggac aacgaattac gtttttcctt caagctccac
     1321 gcgccggttc gcaatggcgc caagctgcat ttcacagtgg agaagccggc gatcactacc
     1381 ggaggtagac cactcgaaag taatacctgg gaatacctgg tttcctaccc tgtttccgcg
     1441 ccggcagtta cttcgatcgc ggtcgataat gccgcgacgc caacgaagct cactgtgaaa
     1501 ggtcgaggct tcaaagccaa gccgctggtt atttcacttc ttccgcaagc cggagattca
     1561 gtaaaggtca cgcccacggc aaataccgtg acggagaaca gctttgaagt tgtgcttccg
     1621 actggcgaca agaagctgca cgcagggtgt tggcaggtgc aggtcgaagc cggcggactt
     1681 actacgaacg tatcggactg gtttgccatt ccgcccgatc cgtcattgga ttccgcggag
     1741 cgcaccgata agttcatctt cgtaaaagga aaggacctga ttgacttcag cgcctgtggt
     1801 ggtcaacaga tcagtttcaa agcactgaaa gaagacaaca ccggcgcgac ggatcttgaa
     1861 gtcaaagact ggaacaacgg cgcgcctgtg ctgtcgcttc ctgacaaggt gaaggaaggc
     1921 aagtggaaga tacaggtcat caagggcgca aaaaagagtg agaagccgct gactgtacgt
     1981 ccttgatagc tgcgacggcg tggtcctgag catagtggcg ccgtgttgcg ctactatgct
     2041 cagccatgac ttcgagaaac gatgccacac aacagtcctg ggaacgcggt gagtacacca
     2101 tcagtacgga ccgttcccgc ctcgacgtga atctcataca cgacttcatc agca
//
LOCUS       DASWTX010000107         3083 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_44874, whole genome shotgun sequence.
ACCESSION   DASWTX010000107 DASWTX010000000
VERSION     DASWTX010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3083
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44874"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1209
                     /locus_tag="VGD38_01700"
     CDS             <1..1209
                     /locus_tag="VGD38_01700"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0726751.1"
                     /translation="SETLAQTDTRVRKTEAPGTEPRPEPPAIDAGGNVDGDPIKTLRD
                     QIAEASNHQERNRFQLKLADELVKTGYKTEALKELNAILSGSEFDPISFYNLGNAFAR
                     LGETESAITAYRRAIEQRNGGYSRAHNNLGVVMLREGRWDDAYDAFISALKLENFRYA
                     EASYNLGRLYAARGQSDLAVREWRRALAVDPKHDAAAQALARGDEEDVIVVAPKVKAP
                     KPSAPATAVSASAGPRRVARLTLDQTSYDYLQRARGASERGKAIEAVENYKRVLNREN
                     GYFAPANLELSYALLSLKRYEEAQAQLLQVAQRDGARYPVSYFHLARLYELKGDLKLA
                     EEMFSKAHEANASANVRYLLDLSRVREKQGNFKGALEAMERYVTVVQQQGEKPAWCDE
                     RLAALRAKAQ"
     gene            complement(1212..2756)
                     /locus_tag="VGD38_01705"
     CDS             complement(1212..2756)
                     /locus_tag="VGD38_01705"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000369668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEY0726752.1"
                     /translation="MSLPFIEENDQTLARRAHLDALRELVGNAYPNKFERSELVEPGR
                     EDTITSIAEKFRTLEPKAPPDGRPSPEELENANRQLNDFTVRLAGRIASPPRVMGKAA
                     FVHISDGVSRLQLFIRRDDVIGVHNDKFGGAVDGWKLFQLLDHGDFIGVEGFLFVTKT
                     GELSVHVQKLQFLSKALLPLPDKMHGVHDPELRQRQRYVDLIAGSLKLEKDDSLTSRE
                     VFERRAETVKELRRILDDHGYIEVETPMLTPLPTGAAARPFKTHHNTLDIDLYARIAP
                     ELYLKRLLVGGFEKVYELNRNFRNEGISTRHNPEFTMLEFYWAYADVNAMMDFCEQML
                     RAVAFKVLGHTHVWFGDQELDFGAPFRRVGMRESLGDSEHEVTNDNVLRLFEERIEHG
                     LIQPTFITDFPKPISPLSKASPSNPDVAERFELYIAGMEIANGFSELNDPAEQLERFR
                     DQMKQREKGDEEAMLMDEDYIRALSYGMPPAAGIGIGIDRLVMLLTNKQSIRDVIIFP
                     HLRPER"
     gene            2806..>3083
                     /locus_tag="VGD38_01710"
     CDS             2806..>3083
                     /locus_tag="VGD38_01710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003768921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HEY0726753.1"
                     /translation="MKDKIVSTDQMIDVRERLRAKGARLVFTNGVFDLLHVGHVRYLA
                     EARALGDALVVAINSDRTVRELKGPKRPVFNEAERAEILAALRSVDYVT"
BASE COUNT          674 a          887 c          919 g          603 t
ORIGIN      
        1 agtgaaactc tggcgcaaac ggacacgcga gtgcgcaaga ctgaagcgcc gggtacggaa
       61 cctcgtcccg agccgcctgc gatcgacgcg gggggaaacg tcgacggcga tccgatcaag
      121 accttgcgcg accagattgc agaggcgtcg aaccatcagg aacgcaatcg tttccaactc
      181 aaacttgccg acgagctggt gaagacgggt tacaaaaccg aagcgctcaa agagctcaac
      241 gcgattttga gcgggagtga gttcgatccc atcagctttt acaacctcgg caatgcgttt
      301 gcccgtcttg gcgaaacgga atccgcaatc acggcttatc ggcgcgcgat cgagcagcgt
      361 aacggcggat actcgcgcgc gcacaacaat ctcggcgtgg tgatgttgcg tgaaggccgt
      421 tgggatgacg cgtacgacgc gtttatctcg gcgctgaagt tggaaaactt tcgttacgcc
      481 gaagcgagct acaacctcgg gcggctttat gccgcgcgcg ggcagagcga tcttgcggtg
      541 cgcgagtggc gccgtgcgtt ggcggtcgat ccgaagcacg atgcggcggc gcaggcattg
      601 gcgcgtggtg atgaggaaga tgtgatcgtg gtcgcgccga aggtgaaagc tccgaaaccg
      661 agtgctccgg cgactgcggt tagcgcgtcc gctggtccac gtcgggtcgc gcggctcacg
      721 ctcgatcaga cgagctacga ttatctgcag cgcgcgcgtg gtgcgtcaga gcgcgggaag
      781 gcgattgaag cagttgagaa ctacaagcgt gtgttgaatc gcgaaaacgg ttacttcgcg
      841 ccggcgaatc tcgagctcag ttatgcgctg ttgagtttga agcgttatga agaagcgcag
      901 gcgcaactgc tgcaggtcgc gcaacgcgac ggcgcgcgtt acccggtcag ttattttcat
      961 ctcgcgcgtt tgtatgagct gaaaggcgac ctcaagcttg cggaggaaat gttctccaaa
     1021 gcgcacgagg cgaacgcttc agcgaacgtc cgctaccttc tcgacctgag ccgcgtgcgt
     1081 gagaagcagg gcaacttcaa aggcgccctc gaagccatgg agcgctacgt caccgtggtc
     1141 caacagcagg gcgaaaaacc cgcctggtgc gacgaacgcc tcgccgcgct gcgtgcgaaa
     1201 gcacaataaa actaacgttc cggacgaagg tgcgggaaga tgatgacgtc gcggatcgac
     1261 tgtttgttcg tcaataacat gacgagacga tcgatgccga tgccgatgcc tgcggcgggc
     1321 ggcatgccgt aggagagcgc gcggatgtag tcttcgtcca tcagcatcgc ctcttcatcg
     1381 cccttttcac gctgcttcat ctgatctcga aaacgctcca actgctccgc cggatcgttc
     1441 aactccgaga acccattcgc gatctccatc cccgcgatgt acagctcaaa ccgttccgcc
     1501 acatccggat tgctcggcga cgccttcgac aacggcgaga tcggcttcgg aaaatccgtg
     1561 atgaatgtcg gctgaatcaa tccgtgctcg atccgttctt caaacaacct cagcacattg
     1621 tcattcgtga cttcatgctc cgaatcgccg agactctccc gcatccccac acgccgaaac
     1681 ggcgcgccaa aatcaagctc ctgatcgccg aaccacacgt gcgtgtggcc caacactttg
     1741 aaagcaacgg cgcgcaacat ctgctcgcaa aaatccatca tcgcgttcac gtccgcatac
     1801 gcccagtaaa actcgagcat cgtaaactcg ggattgtgac gcgttgagat gccttcgtta
     1861 cggaagttgc gattcagctc gtacaccttt tcaaaaccac caaccagcag ccgcttcaaa
     1921 tacaactcgg gcgcgatgcg cgcgtagaga tcgatatcga gcgtgttgtg atgcgtcttg
     1981 aacgggcgag ccgccgcgcc ggtcggcaac ggcgtcagca tcggcgtctc cacttcgatg
     2041 taaccgtgat cgtcgagaat gcgacgcagc tctttgaccg tctcggcgcg tcgttcaaac
     2101 acttcacgcg acgtgagcga gtcgtctttt tcgagtttca aactgcccgc gatcagatcg
     2161 acataacgct ggcgctgccg cagctccggg tcgtgtacgc cgtgcatctt gtcgggcagc
     2221 ggcaaaagtg ctttcgaaag aaactgaagc ttctgcacgt gcaccgaaag ctctcccgtt
     2281 ttggtaacga acagaaaacc ctcgacgccg atgaaatcgc cgtggtccaa aagctgaaac
     2341 agcttccacc cgtcaacagc gccgccaaac ttgtcgttgt gaacaccgat aacgtcgtcg
     2401 cggcggatga aaagctgcaa acgagaaacg ccatccgaga tatgaacgaa ggccgccttg
     2461 cccatcacgc gcggcggcga cgcgatccgc cccgcgagcc gcacggtgaa atcgttgagt
     2521 tgccggtttg cgttttcgag ttcttccgga gacggccggc catcgggcgg cgccttcggt
     2581 tccagcgtgc gaaacttctc ggctattgag gtgatcgtgt cttcgcggcc gggctcgacc
     2641 agctcgctgc gttcaaactt gttcggatag gcgttaccga cgagttcgcg cagcgcgtcg
     2701 aggtgcgcgc gccgcgccag ggtttgatcg ttctcttcga tgaatggcaa tgacaagatg
     2761 cggtctccag agtaaaggga cgattatgct agattctatc cacagatgaa agacaagatt
     2821 gtaagcacgg atcaaatgat tgacgtgaga gaacgtctgc gggcgaaggg cgcgcggctg
     2881 gtgtttacga atggcgtgtt tgatctgttg cacgtcggcc acgtgcgcta tctcgccgaa
     2941 gcgcgtgctc tgggagacgc gctcgtggtc gcgataaaca gcgatcggac agtacgtgag
     3001 ttgaaaggac cgaagcggcc ggtcttcaac gaagctgagc gcgccgagat actggcggcg
     3061 ctgcggagcg tcgattacgt cac
//
LOCUS       DASWTX010000108         2353 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_348277, whole genome shotgun sequence.
ACCESSION   DASWTX010000108 DASWTX010000000
VERSION     DASWTX010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2353)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2353)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2353
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_348277"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..287)
                     /locus_tag="VGD38_01715"
     CDS             complement(<1..287)
                     /locus_tag="VGD38_01715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726754.1"
                     /translation="MKALKLLPRRIFAFVARDFRLFVSYRMQFFLRIISVLAVVTTLF
                     FISKIFAGFTDPQYSQWRDPLATWLTGLAVLNYFMTGFSSLANSIRQEQMQG"
     gene            complement(284..1246)
                     /locus_tag="VGD38_01720"
     CDS             complement(284..1246)
                     /locus_tag="VGD38_01720"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0726755.1"
                     /translation="MTIVRELAISIRNLSKTYPVPFRRLRAFFRRPVKEPVEALREVT
                     FDVHSGEIFGLIGRNGAGKTTLTKIVATLVQPTTGTVTVRGNDSVLHDEQVRRQIGLA
                     TAEERSFYWRLTGEQNLMFFARLHGLSDRTAKHRIQELFAKLELDEVARRRFGEMSTG
                     NKQRLAVARAMLSHPPVLLLDEPTRSLDPLAAARMREMISSLARQDPPVTILLTSHNL
                     AEVETLCERVAIISRGRIRAIDTPQHLRTLTAKTEQVHVTVSGLNGTNESEKISFNRE
                     FGDHKLDDTLRDLHSRGARILDIDVEKGSLLDALELYESKDEAE"
     gene            complement(1243..2058)
                     /locus_tag="VGD38_01725"
     CDS             complement(1243..2058)
                     /locus_tag="VGD38_01725"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0726756.1"
                     /translation="MNRLTIIGLIIVVVLVIVALFAPWIATYDVGATNLSMRYLPPSS
                     EHWFGTDSTGRDIFSRVVFGARISLQVGIIVVTVSAVIGTLLGAIAGYYGGWVDRVVS
                     GYVFNVFLAFPGLLLAIAMVAFLGAGLNKLILALCIIGWVGYARLIRGQVLKVREYDF
                     VQAARALGASDARILLVHILPNAIQPLIVQASLGMAGAVLSEAALSFLGLGVPPPAPS
                     WGVMIEEARDLSTLQAAPHALIFPGIAIALTVLAFNFIGDGLREHLDPRQRAR"
     gene            complement(2059..>2353)
                     /locus_tag="VGD38_01730"
     CDS             complement(2059..>2353)
                     /locus_tag="VGD38_01730"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0726757.1"
                     /translation="KGLSERTVIYKHVLKNGLIPVVTILGLQLGVLLAGAIITEKIFG
                     WPGLGLLLVEDGIGKRDYRVVQGCVLVISMTYIIANLLTDMVYRWLDPRIRVS"
BASE COUNT          542 a          708 c          679 g          424 t
ORIGIN      
        1 ccctgcattt gttcctggcg aatcgagttc gcgagactcg agaagccggt catgaagtag
       61 ttgagaacgg cgagccccgt gagccacgtc gcgagcggat cgcgccactg cgagtactgc
      121 ggatcagtga accccgcgaa gatcttcgaa atgaagaaca gcgtcgtcac gactgccagc
      181 accgagataa tgcgcaaaaa aaactgcatc cggtaactaa caaacaaccg aaaatcgcgc
      241 gccacaaacg cgaagatcct tctaggtagc aattttaatg ctttcattcg gcttcgtcct
      301 tggattcgta cagttcgagt gcgtcaagca aagatccctt ctctacatca atatcgagta
      361 tgcgcgctcc gcgactgtgc aggtcacgca gcgtgtcgtc gagcttgtgg tcgccaaact
      421 ctctgttaaa ggagattttc tcgctttcgt tcgtgccatt aagaccggat acggttacat
      481 gaacttgttc ggtcttggct gtgagcgtcc gcaaatgctg cggcgtgtcg atcgcacgaa
      541 tgcgcccgcg gctgatgatg gcgacgcgct cgcaaagcgt ctccacttcc gcgaggttgt
      601 gcgatgtaag caggatcgta accggcggat cctgtcgcgc aagcgagctg atcatttctc
      661 tcatgcgcgc tgccgcaagc ggatcgagtg aacgcgtcgg ctcatccaac agcaacaccg
      721 gcggatgcga caacatcgcc cgcgcaaccg cgagccgctg cttgtttccc gtcgacatct
      781 cgccaaagcg ccggcgcgcg acttcatcca gttcgagctt cgcaaacaac tcttgaatgc
      841 ggtgcttcgc ggtgcgatcg ctgagcccgt gaagacgcgc aaagaacatc aggttctgtt
      901 cgcccgtcag acgccagtag aaactgcgct cttcggcagt ggcgagaccg atctgccggc
      961 gcacctgctc atcgtgcagc acgctgtcgt tgccgcgaac agtgaccgtg ccggtggtcg
     1021 gctgcaccaa tgtcgcgacg atcttggtta gcgttgtctt gccggcgccg ttgcgcccga
     1081 tcaatccgaa gatctcgccg ctgtgaacgt caaacgtaac ctcgcgcaat gcttcgaccg
     1141 gctctttcac cggacgccga aagaacgcac gcaaacgtcg aaagggaacc ggataagtct
     1201 tcgataaatt gcggatggaa atcgcgagtt cgcgcacgat cgtcaccggg ctcgttgtcg
     1261 aggatcgaga tgttcgcgca agccgtcgcc gatgaagttg aaggcgagca cggtgagggc
     1321 gatggcgata ccgggaaaga tgagcgcgtg cggcgcggcc tgaagcgtcg agagatcgcg
     1381 tgcttcctcg atcatcacgc cccacgacgg cgccggcggc ggcacgccga gtccgagaaa
     1441 cgacaacgcg gcttcagaaa gcaccgcgcc cgccatgccc aaactcgcct gcacgatcag
     1501 cggttgaatc gcgttcggca aaatgtgcac gagcaggatg cgcgcgtcgc tcgcgccgag
     1561 cgcgcgagcc gcctgcacga aatcgtattc gcgcaccttc agcacctggc cgcggatgag
     1621 ccgcgcgtaa ccaacccagc cgatgatgca caacgcgaga atcagtttgt tcaatccggc
     1681 gccgagaaac gcgaccatcg caatcgcgag caacagaccc ggaaacgcta gaaacacgtt
     1741 gaagacgtaa ccggaaacaa cgcgatcgac ccagccgccg tagtaaccgg caatcgcgcc
     1801 gagcaaagta ccgatgacgg ccgaaaccgt aacgacgatg atcccgacct gaagcgagat
     1861 gcgcgcgcca aaaaccacgc gcgagaagat gtcgcggccc gttgagtcag tgccgaacca
     1921 gtgttccgag gacggcggca gataacgcat cgagaggttc gtcgcgccga cgtcgtacgt
     1981 cgcgatccac ggcgcaaaca gcgccacgat cacgagcacc acaacgatga tgagtccaat
     2041 aatcgtcagc cggttcatct atgagactcg aatgcgcgga tcaagccagc gatagaccat
     2101 gtccgtgagc aggttcgcga tgatgtaggt catgctgatc acgagcacgc agccttgcac
     2161 gacgcggtaa tcgcgttttc cgatcccgtc ttcgacgagc aacagaccga gaccgggcca
     2221 accaaaaatc ttttccgtga tgatggcgcc cgcgagcagg acgccgagtt gtaagccgag
     2281 gatcgtgaca acgggaatca gtccgttctt caggacgtgt ttgtaaatga cggtgcgctc
     2341 gctcaaaccc ttc
//
LOCUS       DASWTX010000109         4329 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_174411, whole genome shotgun sequence.
ACCESSION   DASWTX010000109 DASWTX010000000
VERSION     DASWTX010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4329)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4329)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4329
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174411"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..624
                     /locus_tag="VGD38_01735"
     CDS             <1..624
                     /locus_tag="VGD38_01735"
                     /inference="COORDINATES: protein motif:HMM:NF014042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043743 - LPPG:FO 2-phospho-L-lactate
                     transferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-phospho-L-lactate transferase CofD family
                     protein"
                     /protein_id="HEY0726758.1"
                     /translation="HIFPATISDVRLVAELEDGSVVSGETQISKSFQPIRRLRLEPER
                     CLPLPQVLKAIRTADVITVGPGSLYTSILPNLLVAQVAKVIGQSQATKIFVNNLMTQP
                     GETDGFTARAHLEAIKKYAPDIHFDFVVVNNRRISEEQAERYAAEGAYQIGLDDPIEE
                     VVDQSTEIVRADLLDGGEKVRHNSERLAEVVLSCRERVLSEVTVSWL"
     gene            654..1997
                     /gene="glmU"
                     /locus_tag="VGD38_01740"
     CDS             654..1997
                     /gene="glmU"
                     /locus_tag="VGD38_01740"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: protein motif:HMM:TIGR01173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003977 - UDP-N-acetylglucosamine
                     diphosphorylase activity [Evidence IEA];
                     GO_function: GO:0019134 - glucosamine-1-phosphate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEY0726759.1"
                     /translation="MAAGLGTRMKSKRAKVLHELAGRPLIAHVVRAAQSLDPKTILVV
                     VGHQAEEVEQAVLAEIGELASFAIQAKQRGTGDAVESARRQLEDSGSLILLLSGDVPM
                     IRAETLRKLIDHHRATNAACTILGVRLENPTGYGRIIRDEQGRFEKIVEQKDATEEER
                     QVREINSGIYCFESGDLFEALKRLEPKNQQGEYYLTDVAEILNSSNRKVEVFTHTDQR
                     EVSGINTRAELAEFENLLRRNAIRRLMLESGVTFIDPSHAYISPEAEIGRDTIIYPDV
                     TIEGKAVIGEGCVIRSGARISNSKLGDNVTVKDHSLIVDSEIGSNCSVGPFAHLRMNA
                     TLEEKATVGNFVEVKKSRLKRGTKAMHLTYLGDATIGERTNIGAGTVTCNYDGVRKHE
                     TIIEDDVKIGSDTMLVAPVRVGSRSVTGAGSVVTKDVPPDSLVAGVPAEVKKKLR"
     gene            2021..3883
                     /gene="glmS"
                     /locus_tag="VGD38_01745"
     CDS             2021..3883
                     /gene="glmS"
                     /locus_tag="VGD38_01745"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: protein motif:HMM:NF001484.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEY0726760.1"
                     /translation="MCGIVGYVGNKQVVPLIIDGLRKLEYRGYDSAGIAVVNEGHELE
                     IRRAEGKLRNLEETIRLSPLDGTYGIGHTRWATHGRPTEENAHPHRDCTGRVVVVHNG
                     IIENYLQLKDRLRKSDHRFVTETDTEIIAHLIEEHLREHQNFEQAVRAAVSELRGIFA
                     LSIIHADEPDTIIAVRQGPPVVIGLGDREFFVASDIPPILHHTRDVFFLGDGEIAVIT
                     KDAVRVTDFEGSSVQPAIQRITWDPIMAEKGGFKHFMLKEIYEQPRSVRDTVQGRISL
                     DSGQVFLDEMSNLTEADFKRITSIKIAACGTSWHAGLAGKYMIEQLARVPVDVDYASE
                     FRYRGPVMDENSLLLVISQSGETADTIAALREAKELGAKVLAICNVQGSMIVREADGT
                     ILTHAGPEIGVASTKAFTGQMVALYLLGLYLGQVRGVLSKEEACFHAQELAELPVKLE
                     HLLTNSDHIEELSKEFFRSTDFLYLGRGINFPVALEGALKLKEISYIHAEGYPAGEMK
                     HGPNALIDERLPVLFINTREEGNRASELRYEKTHSNIVEVKAREGIVISVLTEGDTMS
                     SVVSDHVIEIPPSSDLLSPILSIIPLQLLAYHIAVRRGCDVDQPRNLAKSVTVE"
     gene            3891..4277
                     /locus_tag="VGD38_01750"
     CDS             3891..4277
                     /locus_tag="VGD38_01750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726761.1"
                     /translation="MLIRLLGLLGLMLALGYFVEGLTLSIRVYRGLSHPDFRTLTYRF
                     VIISLDFFFTLVLVIASVGLLFAQRWARKMWLIMMSILLVWHVILAAFYQLGRGVDTI
                     FLMWTWAVLLLTAVSWWYFTRRSLHS"
BASE COUNT          941 a         1242 c         1281 g          865 t
ORIGIN      
        1 cacatcttcc cggcgacaat cagcgacgtc aggctcgtag cggaacttga agacggctca
       61 gtcgtcagcg gtgagacgca gatctcgaag tcttttcaac cgattcgccg tttgcggctc
      121 gaaccggaga gatgtttgcc gttgccgcag gtgctgaaag cgattcgcac cgcggacgtc
      181 atcacggttg gtccgggttc gctttacacg agcatcctgc cgaacctgct cgtggcgcag
      241 gtggcgaagg tgatcggtca aagtcaggcc accaaaatct ttgtaaacaa tttgatgacg
      301 cagcctggcg agactgacgg cttcaccgct cgggcgcacc ttgaagcaat caagaagtac
      361 gcgcctgata tacattttga ctttgtggtc gtgaacaacc gccggattag tgaagaacag
      421 gcggagcgtt acgcggctga gggcgcttat cagatcggac ttgacgatcc gatcgaagaa
      481 gtcgtcgatc aaagcaccga gatcgtgcgt gcggatctgc tggacggcgg tgagaaagtc
      541 aggcacaact cggagcgttt ggctgaagtc gtgctcagtt gccgcgaacg cgtgctctcc
      601 gaggtgacag taagctggtt atgaacgaaa ccaaaccact caacgttctc gtgatggctg
      661 caggcttggg cacgcggatg aaatcgaaac gagcgaaggt cctgcacgag ctggccggac
      721 ggccgttgat cgcgcacgtt gtgcgtgcgg cgcagtcgct cgatccgaag acgatcctcg
      781 tggtggttgg tcatcaggcg gaagaagtcg aacaggcagt gctcgccgag atcggcgaac
      841 ttgcttcgtt tgcgatccag gcaaagcaac gtggcacagg cgacgcggtt gagtccgcgc
      901 gacgccagct tgaagattcc ggctcgctga tactgctctt gtcaggcgac gtgccgatga
      961 tccgcgctga aacgctgcgg aagttgatcg atcatcatcg tgcaacgaac gccgcttgta
     1021 cgatcctcgg cgttcgtctc gagaatccga ccggctacgg gcgaatcatt cgcgacgagc
     1081 agggccggtt tgaaaagatc gtcgaacaaa aggacgccac cgaagaagag cggcaggtgc
     1141 gcgagataaa ctccggaatc tactgtttcg agtcgggaga tttgtttgaa gctttgaagc
     1201 gactcgaacc gaagaaccag caaggcgagt actacctgac cgacgttgcc gagatcctca
     1261 attccagcaa ccgcaaggtt gaggtgttca ctcataccga tcagcgcgag gtttccggaa
     1321 tcaacacgcg cgccgaactc gcggagtttg aaaacctcct gcgccgcaac gcgattcgcc
     1381 ggctcatgct cgaaagcggc gtgaccttta tcgatccgtc gcacgcctac atcagcccgg
     1441 aagcggagat cggccgcgac acgattattt atcccgacgt tacgattgag gggaaagccg
     1501 tcattggcga gggctgtgtg atccgttccg gcgcgcgtat ctccaattcg aaactcggcg
     1561 ataacgtcac cgtcaaagat cactcgctaa tcgtcgactc cgagatcggt tcaaactgtt
     1621 ccgtcggccc gtttgcgcac ctgcgcatga acgccacgct cgaagaaaaa gccaccgtcg
     1681 gcaatttcgt cgaggtgaag aagtcgcgct tgaaacgcgg caccaaagcg atgcatctga
     1741 cgtatctcgg cgacgccacg atcggcgaac gtacaaacat cggcgccggc accgtcacct
     1801 gcaactacga cggagttcgc aagcacgaaa ccatcatcga ggatgatgtt aagatcggtt
     1861 ccgacacgat gctcgtggcg ccggtgcgcg tcggctcgcg ctcggtgaca ggcgccggat
     1921 cggtcgtgac gaaagatgtg ccgccggatt cgctcgtcgc gggcgtgccg gcggaagtaa
     1981 agaaaaaact aaggtagaaa gttttcggag taaacgcagc atgtgtggaa ttgttggtta
     2041 cgtaggcaat aaacaggtcg tgccgctcat catcgacggg ctgcgcaagc tcgagtatcg
     2101 cggctacgac tcagccggca tcgcggtcgt caacgaagga cacgagctcg agattcgccg
     2161 cgctgaaggc aagctgcgca atctcgaaga gacgatccgc ctgagcccgc tcgacggcac
     2221 ttacggaatc ggccacacgc gttgggccac ccacgggcgc ccgaccgaag aaaacgctca
     2281 tccgcaccgc gactgcaccg gccgcgtcgt cgtggtccac aacggcatca tcgagaacta
     2341 cctgcagctc aaagaccggc tgcgcaaatc cgatcaccgc tttgtcacgg aaaccgacac
     2401 cgagatcatt gctcacctga tcgaggaaca cctcagagag catcagaatt tcgagcaggc
     2461 agtgcgcgcc gcagtttcgg aactgcgcgg catctttgcg ttgtcgatca ttcacgcaga
     2521 cgaacccgac acgatcatcg ccgtgcgcca gggaccgccc gtagtcatcg gtctcggcga
     2581 tcgcgaattc ttcgtcgctt ccgacattcc accgatcctg catcacacac gcgacgtctt
     2641 cttcctcggc gacggcgaga tcgccgtgat cacgaaagac gcggttcgcg tgacggattt
     2701 cgaaggcagc tcggtccagc ccgcgatcca acgcatcacg tgggatccga tcatggccga
     2761 aaagggcggc ttcaagcact tcatgctcaa agaaatatac gagcagccgc gatcggttcg
     2821 cgacacggtg cagggacgca tctcgcttga cagcggccag gtgtttctcg acgagatgag
     2881 caatctcacc gaggccgact tcaaacgcat cacgtcgatc aagattgcgg cgtgtggcac
     2941 gtcgtggcac gcgggactcg caggcaagta catgatcgag cagctcgcgc gcgtgccggt
     3001 tgatgtcgat tacgcgtcgg agtttcgtta tcgcggtccg gtgatggacg agaactcgct
     3061 gctgctcgtc atctcgcaat caggcgaaac agccgacacg atcgccgcgc tgcgtgaagc
     3121 gaaagagctg ggcgcgaagg tgctcgcgat ctgcaacgtg cagggctcga tgatcgtgcg
     3181 cgaagctgac ggcacgatcc tcacacatgc cggtccggaa atcggcgtgg cttcgacaaa
     3241 ggctttcacg ggccagatgg tcgcgcttta cctgcttggt ttgtatctcg gtcaggttcg
     3301 cggcgtgctg tcgaaagaag aagcctgctt tcacgcgcag gagctggcgg agctgccggt
     3361 gaagctggaa cacctgctga ccaactccga ccacatcgag gagctttcga aagagttttt
     3421 ccgctcgacg gactttctct acctcggacg cggcatcaat ttcccggtcg cgctcgaagg
     3481 cgcgttgaag ttgaaagaga tctcttacat ccacgccgaa ggttatccgg ccggtgagat
     3541 gaaacatgga ccaaacgcgc tgatcgacga acgcctgccc gtgctcttca tcaacacacg
     3601 cgaagaaggc aatcgcgcgt cggagctgcg ttatgaaaag acgcactcga acatcgtcga
     3661 ggtgaaggcg cgtgaaggca tcgtgatttc cgttttgact gaaggcgaca cgatgtcgtc
     3721 ggtcgtctcc gatcacgtga tcgagatccc gccgtcgagc gatctgcttt cgccgatcct
     3781 ctcgatcatc ccgctccaac tcctcgccta ccacatcgcg gtccgtcgcg gctgcgacgt
     3841 ggaccaaccg cgcaacctgg cgaagtcagt gacagtggaa tagaacccgg atgctcatca
     3901 gattgttggg actgctgggt ctgatgttgg cgttgggtta tttcgtggaa gggctgacac
     3961 tatcgattcg tgtctacaga ggtctgagtc atcccgactt caggacacta acctaccgct
     4021 tcgtgatcat ctcgctggat ttcttcttca cgctcgtgct ggtaattgcg tccgtcggtc
     4081 tattgttcgc gcagcgttgg gccaggaaga tgtggctgat aatgatgtcg attctactgg
     4141 tctggcacgt catcctcgcc gctttctatc aactcggccg tggcgtcgac acgattttct
     4201 taatgtggac gtgggcagtg ttattgctga ccgcggtttc ctggtggtac ttcaccaggc
     4261 gcagtctgca ttcataaaac ccgggccgga gccccctcgg gggcaaacgg ctgcgggcac
     4321 tacttcccc
//
LOCUS       DASWTX010000110         1715 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_348339, whole genome shotgun sequence.
ACCESSION   DASWTX010000110 DASWTX010000000
VERSION     DASWTX010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1715)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1715)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1715
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_348339"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            75..1073
                     /locus_tag="VGD38_01755"
     CDS             75..1073
                     /locus_tag="VGD38_01755"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEY0726762.1"
                     /translation="MQSVATLSTATGVTAVRGRAAVISAPGRIDLQEIKFREPRVGEV
                     RVRLEGCGVCASNLPLWEGKPWFEYPIKPGAPGHEAWGRIEATGASINDLAPGDRVAM
                     ISSHGFAEYDFAPASQVVRLPESLDHQPFPGEALGCAVNILRRARLMPGETVAIVGVG
                     FLGTLLTQLGSRAGTNVFAISRRRSSLEMAKEFGAAAAIEAGRALEVAKRLTQGRGCN
                     CVIEAAGTQQSLDLATELTSEGGRLVIAGYHQDGPRQVNMQLWNWRGLDVINAHERNP
                     DVYVDGIRGAILAVESGVMDPLPLYTHKFAFDELPRAFEALAQSPEGFIKGVVLYE"
     gene            1066..>1715
                     /locus_tag="VGD38_01760"
     CDS             1066..>1715
                     /locus_tag="VGD38_01760"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY0726763.1"
                     /translation="MSNPDTDSKPRLGFVGLGWIGRARLESVVQARVARIAALHDVTP
                     AMVEEAQELAPKAVLCASFEELLDQDLDGVVIATPNRFHAEQSITALNRGLAVFCQKP
                     LGRNTLETSSIVRSARNAERLLGVDLSYRHLPAAQQVISLVQSGALGKVFAVEAKFHN
                     AYGPDKQWFYDYAFSGGGCVLDLGVHLLDLALEPLGFPAIARIDGALFSEGRSLAKP"
BASE COUNT          310 a          476 c          571 g          358 t
ORIGIN      
        1 agcggtcagt attttccgac ggttccggtt ggtgtaagcg aggctctaca cacccttgaa
       61 gccaggaagg tctaatgcaa tccgtagcaa cactcagcac tgcgacagga gtaacggctg
      121 ttcgcgggcg ggcggcagtg atctcggcgc cgggccggat cgatttgcaa gagatcaaat
      181 ttcgcgaacc tcgtgtgggt gaggttcgcg tgcggcttga gggctgcggc gtttgtgctt
      241 ccaacttgcc gctgtgggaa ggaaaaccgt ggtttgaata tccgatcaag ccgggcgctc
      301 caggtcacga agcgtgggga cgcatcgagg caaccggtgc cagcatcaac gacctcgcgc
      361 ccggcgatcg ggttgcaatg atctcctcgc atggttttgc cgagtatgac tttgcgcctg
      421 catcgcaagt cgttcgtctt cccgaatctt tagaccatca accgtttccg ggtgaagcac
      481 tcggctgtgc ggtcaacatt ctcagacgcg ctcggctcat gccgggcgag accgtggcca
      541 tcgtcggtgt gggttttctc ggaacgttac tgacgcagct cggatcacgc gcgggcacga
      601 acgtgtttgc gatctcgcgc cgccggtcat cgctggagat ggcgaaagag tttggcgcag
      661 ccgcggcgat tgaggctggc cgcgcactgg aggtggcgaa gcggctgacc cagggtcgcg
      721 gctgcaattg cgtgatcgaa gcggccggca cacagcagtc actcgatctc gcgactgagc
      781 tgacgagcga gggcggccgg ctggtcatcg ctggttatca ccaggatggg ccacggcagg
      841 tcaacatgca gctctggaac tggcgcgggc tcgacgtcat caacgcgcac gagcgaaatc
      901 cggatgtgta cgtcgacggc atacgcggcg ccatcctcgc ggtggagtca ggcgtcatgg
      961 atccgttgcc gctgtacacg cacaagttcg cgttcgacga attgccgcgc gcgtttgaag
     1021 cgctggccca gtcgccggaa ggttttatca agggggtagt tctttatgag taatcccgac
     1081 actgattcga aaccgcggct tgggtttgtg gggctgggat ggattggacg ggcgcgtttg
     1141 gagtctgtgg tccaggcgcg tgtcgccagg atcgctgcgc tgcacgacgt cacaccggcg
     1201 atggttgaag aagcgcagga gctggcgccg aaggccgtct tgtgtgcttc gttcgaggag
     1261 ttgctcgatc aggatctcga cggtgtggtg atcgcgacgc cgaatcggtt tcacgccgag
     1321 cagtcgatca cggcgctcaa tcgcggtttg gctgtgttct gccagaaacc gctcggccgc
     1381 aacacgctgg aaaccagcag catcgttagg agcgcgcgaa acgccgaacg tttgttggga
     1441 gtcgatcttt cgtatcggca tctgcccgcg gcgcaacagg tgatttcgct cgttcagagt
     1501 ggcgcgctcg ggaaagtctt cgccgtcgag gcgaagtttc acaacgccta tggaccagac
     1561 aagcagtggt tttacgacta cgcgttttcg ggcggcgggt gcgtgctgga tttaggagtc
     1621 cacctgctcg atctcgcact cgaaccactc ggctttccgg cgatcgcgcg aattgacgga
     1681 gcgttgttct ccgaaggccg ctcgctcgcg aaacc
//
LOCUS       DASWTX010000111         2056 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_283180, whole genome shotgun sequence.
ACCESSION   DASWTX010000111 DASWTX010000000
VERSION     DASWTX010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283180"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1623)
                     /locus_tag="VGD38_01765"
     CDS             complement(<1..1623)
                     /locus_tag="VGD38_01765"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEY0726764.1"
                     /translation="MGELSNEIGVSAEELELFEYLLEEEGLGEVSPEPTIPRREQRDE
                     APLSFAQERLWFLDQLEPGSAAYNMPGAVWLEGDLDVGALERSLNEIVRRHDVLRTTF
                     RAELGRPVQVIPPSLSLSIPLIDLSQSSDDEAEARRLAREEAAKPFDLTRGPLMRATL
                     VRLADERHLLLVTLHHIVADGWSVTLLVQELAALYAAYRNGEESPLPELQVTYADYAL
                     WQREWLQGERLEQQLAYWREQLHGELPVLQLPLAQVRTKKRRHRGALETVRVSRELTT
                     EMRELGRREGTTLFMTMLAAWQVLLVRMSGASDILVGTPVAGRGSREVEGLIGFFVNT
                     LVLRTQLTGEQSFAEVLKRVREVCLEAYAHQEVPFERIVEELQPDRDLNHPPLFQVLF
                     SLQNAPLPQIDLPGIRMRVEDTTNNTAKFDLALEITEDADELACVWQYDTDVLEAATI
                     KRMAAHYKTLLSSIVANPTREIHELPLLTETEQRALLTEHNTTHVAYPQETLLHELFE
                     EQVTRTPDALAVVSEEAALTYAELNRRANQVAH"
BASE COUNT          430 a          662 c          533 g          431 t
ORIGIN      
        1 atgcgcgacc tggttcgcgc gccggttcag ttcggcgtaa gtcagagcgg cttcttcaga
       61 cacgactgcg agcgcatcag gtgtgcgtgt tacctgctct tcgaacagtt cgtgaagaag
      121 ggtctcttgt ggatacgcga cgtgagttgt gttgtgctcg gtgagtagcg cgcgttgctc
      181 cgtttcggtc aatagcggca gttcgtgaat ttcgcgtgtg ggattggcaa cgatgcttga
      241 gagtaaggtc ttgtagtgcg cggccatacg cttgatcgtg gccgcctcta agacatctgt
      301 atcgtactgc cagacgcatg cgagttcgtc tgcgtcttcg gttatctcga gtgcgagatc
      361 gaatttcgcc gtgttgttgg tcgtgtcttc gacgcgcatg cggatgccgg gcagatcgat
      421 ttgtggtaac ggcgcgttct gtagagagaa gagcacttga aacaacggcg ggtgatttaa
      481 atcgcggtcg ggctgcaact cttcgacgat gcgctcgaac ggcacctcct gatgcgcgta
      541 cgcttcgaga catacttccc gcacgcgttt gagaacctcg gcaaaactct gctcgccggt
      601 taattgcgtt cgtagcacca gcgtgttcac gaagaacccg atcagccctt ccacctcgcg
      661 gctgccacgc cctgccactg gtgtcccgac cagaatgtct gaagcgccac tcatgcgcac
      721 gagcaacacc tgccacgccg caagcatcgt catgaacaac gtcgttcctt cacgccgtcc
      781 caactcgcgc atctcggtcg tcagctcgcg gctgacacgc accgtctcca gtgccccacg
      841 gtggcgacgt ttcttcgtgc gtacctgtgc gagcggcaac tgcaacaccg gcaattcgcc
      901 gtgtaactgc tcgcgccagt aggccaactg ctgttccagc cgctcgccct gcaaccactc
      961 gcgttgccac aaagcgtagt cagcataagt aacttgcaat tccggcagtg gcgactcctc
     1021 gccattgcgg taggccgcgt aaagcgcagc caactcctgg accaacagcg tcaccgacca
     1081 gccatctgcc acgatgtggt gcaaggtcac gagcaataag tggcgctcat cagccaaccg
     1141 cacgagcgtc gcccgcatca gtggaccacg cgtcaggtca aacggcttcg ccgcttcttc
     1201 tcgcgccaag cgccgcgctt ccgcttcatc atcagacgac tgcgacagat ctatcagcgg
     1261 aatcgacagc gacaacgacg gcgggatcac ctgtaccgga cgccccagtt ccgcgcgaaa
     1321 cgtcgtgcgc aacacatcat gccggcgaac tatctcattg agactccgct ccagcgcgcc
     1381 cacatccaga tcaccttcca accacacggc gcccggcatg ttataagccg cacttccagg
     1441 ctcgagctgg tccaaaaacc acaaccgctc ctgcgcaaac gaaagcggcg cctcatcacg
     1501 ttgctcgcga cgcggaatag tcggctcggg agagacctcg cccagcccct cctcttcgag
     1561 caggtactcg aacagctcta actcttcggc ggaaacgccg atctcattcg acaactcacc
     1621 catcttgatt aacgttcgtc actttcaatt aacgtcgtca ctctcagttc acgacaacgc
     1681 cgagacatcc gctagtgcca agccatcaac accgaaggcg ttcattaggc caaccatcca
     1741 acgccgaagg cgttcgctaa cgtcagccca gggttggagc gcagcgacaa ccctgggaca
     1801 acaaaaacat tacctttgca acgccgaagg tgttggcaag ctcgccaacg ctttcagcgt
     1861 tgcataactt cttatttgtt cttacccagg gttgttccaa ccctgggctg aaattagcca
     1921 acgccttcgg cgttcgttca agctcgaacg ctgccgacga ctagcgcgtc ttcggcgatc
     1981 aaagttactg gtccacagcc gtcgacttac ttgtctccga ccatcaactt accgggtcca
     2041 caaccgtcga cttacc
//
LOCUS       DASWTX010000112         2462 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_304888, whole genome shotgun sequence.
ACCESSION   DASWTX010000112 DASWTX010000000
VERSION     DASWTX010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2462
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304888"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2462
                     /gene="nifJ"
                     /locus_tag="VGD38_01770"
     CDS             <1..>2462
                     /gene="nifJ"
                     /locus_tag="VGD38_01770"
                     /inference="COORDINATES: protein motif:HMM:TIGR02176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016903 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HEY0726765.1"
                     /translation="TGWAMLFGNSVQEVMDFALISQASTLEARVPFLHVFDGFRTSHE
                     VMKIAKLSDEEIAGMMDTELVRQHRARALTPDRPVMRGTAQNPDVFFQSRERANSFYL
                     KTPAIVEQTMERFAELTGRRYKLFEYVGAPNPERLLIMMGSGCETAEETVESLNNDGE
                     NVGLLKVRLYRPFSVSHFINSLPASTKAIAVLDRTKEPGSTGEPLYQDVVTALAEAGT
                     LNGLRVIGGRFGLSSKEFTPAMVKAVFTELKKPKPQNHFTIGIDDDVTFTSIPFDASF
                     NTEPADQVRAVFWGLGADGTVSANKNSIKIIGEETENYAQGYFVYDSKKAGAMTVSHL
                     RFGPRPIKSTYLIQRANFVAVHQFPFFERYNVLDSAMQGATLLINSPYEDVWNHLPAG
                     VQSAIIEKQLRVFAIDASGVARKSQLGNRVNTIMQTCFFALSGVLPRDEAIAKIKEFI
                     RKTYGKRGEAVVRQNFAAVDAALEHLHEIAIPETVTSTIDLSSRIPDKAPEFVREVTS
                     EMIAGRGDLLPVSAFPEDGTYPVGTTRWEKRNIALEVPVWEPDLCIECGKCVMVCPHS
                     TIRAKVCSASDLNDAPAGFKTMPAKWRELPDKLYTIQVAVEDCTGCQLCVEVCPAKDK
                     SNVSRKALNMAPQLPLRDSERVNWEYFLKLPDLHRNGLLAFNSVKNIQLLQPLFEFSG
                     ACAGCGETPYIKLLTQIFGDRAIIANATGCSSIYGGNLPTTPYTTNSDGRGPAWSTSL
                     FEDNAEFGLGMRLALDHQQAYAKNLVQQLRDLIGESLANSLLNTDQSTYEGINTQREL
                     VAALKARITPATGEEARDLLGL"
BASE COUNT          548 a          688 c          691 g          535 t
ORIGIN      
        1 caaccggttg ggccatgttg tttggcaact cggtgcagga agtgatggat ttcgccctca
       61 tttctcaggc aagcaccctc gaagcacgtg ttccgtttct tcatgttttc gatggctttc
      121 gcacctcaca tgaagtgatg aagatcgcga agctctcgga cgaagagatc gcaggcatga
      181 tggatacgga actcgtacgc caacatcgcg cgcgtgcact cactcccgat cgcccagtca
      241 tgcgtggcac tgcccagaac ccggacgtct tctttcagtc acgcgagcgc gccaactctt
      301 tttatctgaa aactcccgcg atcgttgagc aaacaatgga gcggtttgct gaactgacgg
      361 gacgtcgtta caagcttttc gaatacgtag gagctccaaa tcctgagcgc ctgctgatca
      421 tgatgggttc aggttgcgaa acggctgaag agacggtcga gtcactgaac aacgatggtg
      481 aaaacgttgg cctccttaaa gtcaggcttt accgtccctt ctccgtttcg catttcatca
      541 actcgttgcc ggcttccacg aaagcgatcg ccgttctcga tcgcacgaaa gagccgggca
      601 gcactggcga gccgctgtac caggacgtag tcaccgcact cgccgaggct gggacgctta
      661 acggtttgcg cgtgatcggc ggacgctttg gtttgtcgtc gaaggaattc actccggcga
      721 tggtgaaagc ggtttttacc gagctcaaga aacctaagcc acagaaccat ttcacgatcg
      781 gcatagacga cgacgtcacg tttacgagta ttcccttcga cgcttcattc aataccgaac
      841 ctgccgatca ggtacgcgcg gtgttttggg gattaggcgc ggatggaacc gtcagcgcca
      901 ataagaactc gatcaagatc atcggcgaag agacggaaaa ctacgcgcag ggttattttg
      961 tttacgattc caaaaaagcg ggcgcgatga cggtgtcgca cctgcgcttt ggtccacgcc
     1021 cgatcaaaag cacctacctg atacagcgcg caaacttcgt cgccgttcat cagtttccgt
     1081 ttttcgaacg ttacaacgtg ctcgactctg cgatgcaagg cgcgacgctg ctgatcaata
     1141 gtccttacga agacgtctgg aatcatctcc ccgccggcgt tcagtcagcg attattgaaa
     1201 agcagcttcg cgtgtttgcc atcgacgcca gcggtgttgc gcgaaagagc cagcttggta
     1261 accgggtcaa cacgatcatg cagacgtgct tctttgcgtt gagcggtgtc ttgccgcgcg
     1321 atgaagcaat cgcgaagatc aaagagttca tccggaagac ttacggcaaa cgaggtgagg
     1381 ccgtggtgcg gcaaaacttc gccgccgtag atgcagcgct ggaacatctg cacgagatcg
     1441 ctattccgga aaccgtgacc agcacgatcg atctctcgtc gaggattccc gacaaggcgc
     1501 ctgagttcgt gcgtgaggtg acgtcggaaa tgatcgccgg ccgcggagat ctgttgcctg
     1561 tcagtgcgtt tccggaagat ggaacctatc cggttgggac cacgcgttgg gagaaacgca
     1621 acatcgcgtt ggaggtgcct gtttgggaac cggacctttg tatcgaatgt ggcaagtgcg
     1681 tcatggtttg tccgcactcg acgattcgcg cgaaggtttg ttccgcgagt gatctgaacg
     1741 acgcgccagc gggtttcaaa accatgccgg cgaagtggcg cgagcttcct gacaagttgt
     1801 acacgatcca ggttgcggtt gaagactgca ccggctgcca gctctgcgtt gaagtatgtc
     1861 ccgcgaaaga caagagcaac gtgtcgcgca aggcgctcaa tatggcgccg cagttgccgt
     1921 tgcgcgacag cgaacgagtc aactgggaat attttctgaa gctgcccgat ctgcatcgaa
     1981 acggattgct cgccttcaat tccgttaaga acattcagtt gctgcagccg ctattcgagt
     2041 tctcgggagc gtgtgccggt tgcggggaga cgccttacat caaactgctc acgcagatct
     2101 tcggcgatcg cgcaatcatc gccaacgcca ccggttgttc cagtatctac ggcggcaatc
     2161 ttccgaccac tccgtacacg actaacagcg acggacgcgg tcccgcctgg agcacttcgc
     2221 tgttcgaaga caacgccgag tttggcctcg ggatgcgtct cgcgctcgat caccagcagg
     2281 cgtatgcaaa gaacctcgtt cagcagttac gcgacctgat cggcgagtcg ctcgcaaaca
     2341 gtcttctcaa caccgatcaa tcgacctacg aaggcatcaa cacccaacgc gagttagtcg
     2401 cggctttgaa agcgaggatc acgccggcga ccggcgaaga ggctcgcgat ctgcttggcc
     2461 tc
//
LOCUS       DASWTX010000113         9492 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_66539, whole genome shotgun sequence.
ACCESSION   DASWTX010000113 DASWTX010000000
VERSION     DASWTX010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9492)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9492)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9492
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66539"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..816
                     /locus_tag="VGD38_01775"
     CDS             <1..816
                     /locus_tag="VGD38_01775"
                     /inference="COORDINATES: protein motif:HMM:TIGR04020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MupA/Atu3671 family FMN-dependent
                     luciferase-like monooxygenase"
                     /protein_id="HEY0726766.1"
                     /translation="PLHHPVRVAEEWSLVDNLSHGRVAVSFASGWHTNDVIFAPDVYD
                     DRKELMFRHIELIQKLWAGEKIKLPSAGGSDVEFRMLPRPVQPKLPVWITSSGSAETW
                     RRAGEIGANVLAAYIGYSQEELAQRIALYRDARAKHGHDPQTGVVTIMLHTFVGDDDA
                     VVKEKVRAPFSNYLRTYFRQYETTAAGVADVSEADKDALVSAAFEKYFDTSTLMGSPE
                     KCARLVDALADIGVDEIACLIDFGVEANAVLASLEKLSELKDISHAHFYERPC"
     gene            800..4120
                     /locus_tag="VGD38_01780"
     CDS             800..4120
                     /locus_tag="VGD38_01780"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEY0726767.1"
                     /translation="MNDLANRIAALTPEQRARFEESLKAKGLRLPQTDQIPRQPRENV
                     NQFPTSIDQERLWFIEQLQPGNAAYNIFSASRIRGPLDAALMQRVVNELIARHEVLRT
                     TFKVVDDQPVQVIHPQMELKLTPIDLQSVPLEVREQEALRLVTEDFARPFDLENGPLL
                     RVGLLRLADDDHVLHVNMHHTVTDRWSGAIFEQETGLLYEAFANNRPSPLPELPIQYA
                     DYAVWQRSRAESEIYRKQAAYWTRRLKGLPYVLEVPTDLPRPPIQNFRGARVYTRYSK
                     KLLDALRELSRREGVTMFTLALAAYKALLYRYTSQETILVGTTFANRNRPELQNMVGY
                     LLNLIVLSTDLSGNPTFRELLQRERATVLEGFANQDLPFGKLVQELRPVQDASRNPIV
                     QHSLIYLDFPELRVMETLGLTAKHLDIDNGASRFDMTLAMTETAEGYEVDIEYPTDLY
                     RRERIERMTKHLENILESVVVDPTQRLSDLPVLSENEKRQLLVEWNATAVEYPADRCI
                     HELFEAQAERTPDDVAVLFENDRLTYRELNEQANRLARYLRKAGVENGDLVALFTSRS
                     PRMIVALLGILKAGAAYVPLDERYPAERLEFMLRDSAARVLLTEEHLAAKVSRYEGRT
                     ICIDADWENIDACSAQDLDHPVHSDQCAYVIYTSGSTGQPKGVLVPHRSVVNLLHSVV
                     SQVSLKPSDTILAVTTLSFDIAAAEIFLPLIVGARVVIAGRQVAADGVELDRLLRSSG
                     ATLMQATPTIWRMLIDAGWQGNSGLKVFSAGEALDAQLACQLLTRCAEVWNLYGPTET
                     TIYSGVIRLTESAGPAPIGSPIANTTFYVLDQFINPVPIGIYGELCIGGAGLAHGYLN
                     RPALTAERFIPDPFSSEPGARLYRTGDLVRYREDGTLEFAGRLDHQVKVRGFRIELGE
                     VEAVLSRHESVRTAVVVAREERPGEQRLVAYVVGNENPLPTANEWRAFLIQRLPEYMI
                     PSVFVKLESLPLLPNGKVNRRALPVPDSSRPELRRAFFAPENPTQARLVELWQNVLKL
                     DQVGIHDDFFEVGGDSILATRLVSRVRRAFGIELPLRELFWRPTVFELSSVVEDLLIE
                     QLDNLSEEEAEQLLQNEV"
     gene            4110..>9492
                     /locus_tag="VGD38_01785"
     CDS             4110..>9492
                     /locus_tag="VGD38_01785"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEY0726768.1"
                     /translation="MKSKTQLSAAKRALLEKRLAGRSSVDADEQTIRPVPRNGPVPVS
                     LAQQRLWFLDQLEPGLVAYNMPAAVRLVGKLDVAVLAWSLNEIIHRHESLRTTFDPVA
                     GQPIQVIAPSLELSIPMIDLSDLPVETREQEAMRLSQEEASRPFDLLRGPLIRAVLLR
                     LQSEEHVLIVTMHHIATDLWSQGVFKSEFGKLYEAGMKAERSPLPELSIQYADFAQWQ
                     RGWLQGDELDRQTAYWRKQLAGAPPSVDLPTDLARPAQVDYRGATFLFELSAELAESL
                     TALSRREGATLFMTLLAGFKALLWRYTGQSDIVVGTPVANRNREELEGLIGFFVNTLA
                     LRTDVSGDATFLELLDRVRETALGAYAHQDLPFELLVEELQPARDLSRNPVFQIVFDL
                     QSAPATSLELTGLTLQPHEFTSASTRFDLELHLTSTPDAILGAFVYSTNLFAESTIRQ
                     LAERYRMLLQAVVADPEQHVSRIDLLTAAERNRLLVEWNDTVRSFPYKCSIPDLFETW
                     ASRRPHRTALISGAEQVTYGELNRRANQLGHYLKSYGVGEETRVGIYIERSVEMIVAV
                     LGVLKAGATYVPLELSYPEQRLLFMLDDADVQLVLSTEALEEKLPAHRAPVVLLDSDW
                     PQIEQQSEDNPERHITPEHLAYIVYTSGSTGTPKGAAVPHRGAVRLVSCNDYADFGLD
                     EVFLQFAPLAFDASTFEIWGSLLNGAQLVLMPAGLQSLSDLGSALAQYNVTTLWLTSG
                     LFHQMVDEQLEALTTLKQLLAGGDVLSPSHVKRFVDAAPSCRLINGYGPTENTTFTCC
                     YGMDQSSALTGSVPIGCPIANTQVYILDQHLELCPPGFTGELFAAGDGLARGYHGRAD
                     LTAERFVPHPFSNAPGARLYRTGDLARYLANGNVEFLGRADEQVKVRGFRIELGEVET
                     AIGRAAGVRQVAVVVRDYGAGDKRLVAYVVGEIQVDKLQKKLRTTLPDYMVPSAFVVL
                     DELPLTPNGKVDRRALPAADDIKADSAHAAPRTPVEELLAGIWIDVLKVERVSADDDF
                     FELGGHSLLVTRLVSRAQAHFGVELPLKLFFEAPTLAAQAAQVEAALRNETGLHAPPI
                     VPAPRDGGLALSFSQQRLWFLYQLEPSTSAYNIPTAVRLTGSLDSDALRRTLNELVRR
                     HEILRTYYGMADGRPAQFVGPPIDLSIELLDLSELADGDRESRMLEVAEEEARKPFDL
                     TRAPLLRAGLVRLGPQEHVLLLTVHHIVSDGWSQGVMVREVGKLYQAFSEGKESPLEE
                     LPVQYADFAQWRRNWLTGDVLDQQLAYWRRQLAGDLPALDLPTDRPRPEVQSFRGATL
                     TTTLRPGLSDALGVVCRREGVTLFMLLLAAFKALLYRYTGQDEIVIGAPIANRNNVET
                     ENLIGFFVNTLVLRTDLSGDPHCPELLARVRKVTLEAYAHQDLPFEVLVEDLQPERSL
                     SRNPLFQVMFQLENTPKEELPLPGLTLSAVSVAGVASQFDLSVDVVESESGLGITAEY
                     STDLFEAETIRTLLKRWEILLESLAASPDQRLNELPLMDQAERDRLEIASNQTARTFP
                     LQSVVELFEAQVERSPAAVAVVGESESLTFAELNRRANQLAHHLRSAGVGPEVIVAVS
                     LERSVEMVVALLGVLKAGGAYLPLDPAYPQTRLAFMLKDVGARLVITREYLERNAGEV
                     AAGQVSNPDQSFSIDNAAYVIFTSGSMGTPKGVVITHRALSNHCFAVADEYELRDSDR
                     VLQFASLSFDVAAEEIFPTLLAGATIVLQRERVLEPATLVRLIEEERVSVLNLPARFW
                     QEWLEGLERK"
BASE COUNT         1846 a         2719 c         2934 g         1993 t
ORIGIN      
        1 ccgcttcatc acccggtgcg tgtggcagaa gagtggtcgc tcgtcgacaa cctgtcgcac
       61 ggccgcgtcg ccgtctcgtt cgcgtccggc tggcacacga acgacgtcat cttcgcgccc
      121 gacgtttacg acgaccgcaa agaactgatg tttcgtcaca tcgagttgat tcaaaagctg
      181 tgggccggcg agaagatcaa actgccgagc gcgggcggat cggacgtcga gtttcgaatg
      241 ctaccgcggc cggtgcaacc gaagctgccc gtctggatca cgagttccgg cagcgcggaa
      301 acgtggcgca gggccggcga gatcggcgcc aacgttctcg cagcttacat cggctactcg
      361 caggaagagt tggcccaacg catcgcgctt tatcgcgacg cgcgcgcaaa gcatggccac
      421 gatccgcaaa caggcgtggt gacgatcatg ctgcacacgt ttgtcggcga cgacgatgcc
      481 gttgtcaagg agaaagttcg cgcgcctttc tccaattacc tgcgcaccta cttcagacaa
      541 tacgagacca cagccgccgg cgtcgccgat gtcagcgagg ccgataagga cgcccttgtg
      601 agcgccgcgt tcgagaagta cttcgacacg agcacgttga tgggttcgcc cgagaagtgt
      661 gcgcgcttgg ttgatgcgct tgcggatatc ggcgttgacg aaattgcgtg tctgatcgat
      721 ttcggagtcg aggcgaatgc cgtgcttgcg agtctcgaaa agctgagtga gttgaaggat
      781 atttctcacg cacattttta tgaacgacct tgctaacagg atagcggcgc tcacacccga
      841 gcagcgcgcg cgctttgagg aatctctcaa ggcgaagggg ctgcgcctgc cgcaaaccga
      901 tcaaatcccg cggcaaccgc gtgaaaacgt caaccagttt ccgacttcga tcgatcagga
      961 gcggctgtgg tttatcgagc aactgcaacc cggcaacgcg gcctacaaca tttttagtgc
     1021 gagccggatt cgaggtccgc tcgacgcggc gttgatgcaa cgcgtcgtga acgagttgat
     1081 cgcgcgacat gaagtcctgc gcacgacttt caaagtggtt gacgaccaac ccgtgcaggt
     1141 catccatcca cagatggagc tcaagctcac gccgatcgac ttgcaatcag ttccgcttga
     1201 agtacgcgag caggaagcgc tgcgtctcgt aactgaagac ttcgcgcggc cgttcgatct
     1261 ggaaaatgga ccactccttc gcgtcggctt gttgcgcctt gcagacgacg atcacgtgtt
     1321 gcacgtcaac atgcatcaca ccgtgaccga tcgctggtcg ggcgcgatct tcgaacagga
     1381 gaccggactt ctttacgaag cgttcgccaa caacaggccg tcgcccttgc ccgagttgcc
     1441 gattcagtat gccgactacg cggtctggca gcgcagtcgc gcggagagcg agatctatcg
     1501 caagcaggcg gcttactgga ccaggcggtt gaagggcttg ccgtacgttc tggaagtgcc
     1561 gaccgatctt ccacggcctc cgattcagaa ttttcgcggc gctcgtgttt atacgcgcta
     1621 ctcgaagaag ctgctcgatg cgcttcgcga gctgagccgt cgcgagggtg tgacgatgtt
     1681 tacgttggcg cttgcggcgt acaaggcgtt gctctatcgc tacaccagtc aggaaacgat
     1741 cctcgtcggc acgaccttcg ccaatcgcaa ccgtccggag ttgcagaaca tggtcgggta
     1801 tttactgaac ctcattgtgc taagcaccga tctctccggc aatccgacgt ttcgcgagct
     1861 gcttcagcgc gagcgtgcga cggtgctcga aggttttgcg aaccaggacc tgccgtttgg
     1921 aaagctggtc caggaactgc ggcccgttca ggacgcaagc cgcaacccga tcgttcagca
     1981 ctcgcttatc tatctcgact tcccggaatt gagagtgatg gaaacactcg gtttgaccgc
     2041 caaacatctc gatatcgaca acggcgcgtc gcgttttgac atgacgctcg cgatgactga
     2101 aacggccgag gggtacgaag ttgatatcga gtacccgaca gacttgtatc gccgcgagcg
     2161 gatcgaacga atgacgaagc acctggagaa cattctcgaa agcgtcgtcg tggatccgac
     2221 gcagcgttta tcggatctac cggtgttgag tgagaacgaa aagcggcaac tgctggtcga
     2281 gtggaacgcc accgcagtcg agtacccggc cgatcgttgt attcacgaat tgttcgaagc
     2341 acaggccgag cgcacgcccg acgacgtcgc ggtgttgttt gaaaacgatc ggcttacgta
     2401 tcgcgagttg aacgagcagg cgaatcgtct agcgcgctat ttaagaaagg cgggcgtcga
     2461 gaacggcgac ctcgtggccc tcttcacgtc acgctcgccg cggatgatcg tggcgctgct
     2521 cggcattctg aaagcgggcg ctgcgtatgt gccgctggac gagaggtatc ccgccgaacg
     2581 tctcgagttc atgctgcgtg actctgccgc gcgagtgttg ctgacggaag agcatctcgc
     2641 cgcgaaagtg tcacggtatg aaggacgaac gatctgcatc gacgccgact gggaaaacat
     2701 agacgcgtgc agcgcgcagg acttggacca cccggtgcac agcgaccaat gcgcctacgt
     2761 gatctacacg tccggctcga cgggacaacc aaaaggtgtt ctggttcctc accggtctgt
     2821 cgtcaacctg cttcattcgg tggtttcaca agtgtcgctt aagccctccg acacaatact
     2881 cgccgttaca accctgtcgt ttgatatcgc cgcggctgag atatttcttc cgctcattgt
     2941 tggagctcgc gtcgtcattg caggtcgcca agttgcagcc gacggagtcg agcttgaccg
     3001 gttgttacgt agttccggtg cgactctgat gcaggcgacg ccgacgatct ggcgaatgct
     3061 gatcgatgca ggctggcagg gtaactcggg gctgaaagtg ttcagcgccg gagaagccct
     3121 cgacgcacaa ctcgcctgtc agcttttaac gagatgcgcc gaggtgtgga acctttatgg
     3181 tccaaccgag acgacgatct actcgggtgt gattcgtttg acggaaagcg cgggtccagc
     3241 gccgatcggg tcgccaatcg caaacacgac tttctacgtc ttggaccagt ttataaatcc
     3301 cgttccgatc gggatctacg gtgaactctg catcggaggc gcggggttgg cgcacggtta
     3361 tttaaatcgt cccgcgttga cggcggagag attcattccc gatccgttta gcagcgaacc
     3421 gggcgcgcgt ttgtatcgca cgggtgatct cgtgcgctac cgcgaagacg gaacgctgga
     3481 gtttgcaggc cggctggacc atcaggtcaa agtgcgcggc ttccgcattg agcttggaga
     3541 agtggaagcg gtcttgtcgc ggcacgagtc ggtgcgcacg gcggtggttg tcgcgcgcga
     3601 agagcgtccg ggtgaacaac gtctcgtcgc ctacgtggtc ggtaatgaaa atccgttacc
     3661 gacggcgaac gagtggcgag catttctcat tcagcgtttg ccggaataca tgatcccgtc
     3721 ggtgttcgtg aagctggaat cgttgcccct gctgccgaac ggcaaggtca accggcgcgc
     3781 gctgccggtt cccgattcgt cacggccgga gctgcgccgc gcattctttg cgcccgagaa
     3841 cccgacgcag gcgaggctgg tcgaactgtg gcaaaacgtt cttaagttgg accaggttgg
     3901 aattcacgac gacttcttcg aagtcggcgg cgactcgatc ctcgcgacgc ggctcgtctc
     3961 gcgcgtgcgg cgggcgttcg gtatcgagtt accgctgcgt gagctctttt ggagaccaac
     4021 tgtgtttgag ttgtcgagcg tcgtcgagga tctgttgatc gaacaactcg acaatctcag
     4081 cgaagaagaa gccgaacagc ttttgcaaaa tgaagtctaa gactcaactt tcagcagcca
     4141 aacgcgccct gctcgaaaag cggctcgcgg gccgatcgtc ggtcgacgct gacgaacaga
     4201 ccattcggcc ggttccgcgc aatggaccag tgccggtttc gctcgcgcag caacggctct
     4261 ggtttctgga ccagttggaa ccgggccttg tcgcttacaa catgcccgcg gctgtgcgtc
     4321 tcgtcggcaa gctcgacgtg gcggttctgg cctggagttt gaacgagatt atccaccgtc
     4381 atgaaagctt gcgcacgacg ttcgaccctg tcgctgggca accgatccag gtcatcgcac
     4441 cgagcctcga attatcgatt cccatgatcg atctgagtga cttacccgtc gaaacgcgag
     4501 agcaggaagc catgcggctc tcgcaggaag aagcgagtcg tccgttcgat ctgctgcgtg
     4561 gcccattgat ccgcgccgtg ttgctgcgcc tgcaaagcga agagcacgtg ctgatcgtga
     4621 cgatgcacca catcgctact gacttgtggt cgcagggtgt gttcaagagc gagttcggaa
     4681 aactttatga ggcggggatg aaagcggagc gttcgccgct tccggaattg tcgattcaat
     4741 acgccgactt cgcacagtgg caacgaggtt ggttgcaggg tgatgaactt gatcggcaga
     4801 ccgcgtactg gcgcaagcag ctagcgggcg cgccgccatc agttgatctg ccaaccgatc
     4861 ttgcgcgccc cgcgcaggtg gattaccgcg gcgcaacttt tcttttcgag ctttcagcgg
     4921 agctggccga gtcgctcacg gctttgagcc ggcgtgaagg cgcgactctc ttcatgacgt
     4981 tgctcgcagg gttcaaggcg ttgctctggc gttacacagg ccagagcgac atcgtggttg
     5041 gtacgcccgt cgcgaatcgc aatcgcgaag agctcgaagg cctgatcggt ttcttcgtca
     5101 acacgctggc gctgcgaact gacgtttccg gcgacgccac gtttctcgag ttattggacc
     5161 gcgttcgcga aaccgcgctc ggcgcgtatg cgcatcagga tttgcctttc gagttgctcg
     5221 tcgaggaatt acaaccggca cgagatctga gccgcaaccc cgtgtttcag atcgtcttcg
     5281 atcttcagag cgcgcccgcg acgtcactcg aactaaccgg ccttacatta cagccacacg
     5341 agttcacctc cgcgtctacg cgttttgatc tggaactaca cctcacatcg actcccgacg
     5401 caatcctcgg cgcatttgtt tacagcacga acctgtttgc cgaatcgacc attcgtcaac
     5461 ttgccgaacg ctatcgaatg ctcttgcagg cagtcgttgc cgatcccgaa cagcatgtgt
     5521 cgcgtatcga tttgctcacc gcggcggagc gaaaccgatt gctcgttgaa tggaacgaca
     5581 cggtccgttc gtttccatac aagtgcagca ttcccgatct tttcgaaacg tgggccagcc
     5641 gcaggccgca ccggaccgcc ctgatctccg gcgccgagca agtgacttac ggagagctga
     5701 accgccgcgc gaaccagttg ggccactatt tgaaatctta cggcgtcggc gaagagacac
     5761 gcgtcgggat ctacatcgaa cgctcagtcg agatgatcgt cgccgtgctg ggcgtgctca
     5821 aggcgggcgc gacttacgtt ccactcgaat tgtcgtatcc cgaacagcgc ctgttgttca
     5881 tgcttgacga cgcggacgtg cagttggtgc tgagcacgga agcgctggag gagaaactgc
     5941 ctgcgcatcg agcgccggtg gtgctgctcg actctgactg gccgcagatc gagcaacaga
     6001 gcgaagacaa tcccgagcgt cacatcacgc ctgagcatct cgcgtacatc gtttacacgt
     6061 cgggctcgac gggcacgccc aagggtgccg ccgtgccgca tcgcggtgcc gtgcgcctgg
     6121 tcagttgcaa cgactatgct gactttggtc tcgacgaagt gttcctgcag tttgcgccgc
     6181 tcgccttcga tgcttcgacg ttcgagatct ggggcagctt gctgaacggc gcgcaactcg
     6241 tgctcatgcc cgcaggctta cagtcgttat cggatctcgg aagtgcgctc gctcagtaca
     6301 acgtgacgac gctgtggttg acctcgggtc tgtttcacca aatggtcgac gagcaactcg
     6361 aagctctcac gacactcaaa caactgctcg ccggcggcga tgttctttca ccatcacacg
     6421 tgaaacgatt cgtcgatgca gcgccgtcgt gccggttgat caatggctat ggcccaactg
     6481 aaaacacgac cttcacttgc tgttacggta tggaccaatc gagtgcgctt acgggttcgg
     6541 ttcccatcgg atgcccgatt gcaaacacgc aggtctacat cctggaccag cacctggaat
     6601 tgtgcccgcc ggggttcacg ggtgaactgt tcgccgcggg cgatggtttg gcgcgtggtt
     6661 atcacggccg cgcggattta actgccgagc ggtttgtacc gcatccgttc agcaacgcac
     6721 cgggtgcgcg gctctatcgc accggcgacc ttgcgcgcta cctggcgaac ggcaacgttg
     6781 agtttctcgg ccgcgcggac gagcaggtga aggtgcgcgg atttcgtatc gagctcggcg
     6841 aagtggaaac ggcgatcggc cgcgcggcgg gcgtgcggca agtcgcggtc gtcgttcgcg
     6901 actacggcgc cggcgacaag cgtctcgttg cttatgtcgt gggcgagata caagtggaca
     6961 agctgcagaa gaagctgcgc acgacgttgc cggattacat ggtcccatcg gcgttcgtcg
     7021 tgcttgatga actgccgctg acgcccaacg ggaaggtgga tcgtcgcgcg ttgccggcgg
     7081 ccgatgacat taaggcagac tccgctcatg cggcgccgcg aacgccggtc gaagaattac
     7141 tcgccggtat ttggatcgat gtcctgaagg tcgagcgcgt aagtgccgac gacgatttct
     7201 tcgaactcgg cggacactcg ctgctcgtaa cgcggcttgt atctcgcgcg caggcacact
     7261 tcggagtgga gttgccgctg aagcttttct tcgaggcgcc gacacttgcc gcgcaggcgg
     7321 cgcaagtcga agcagcgtta cgcaacgaaa ccggtttgca cgcgccgccg atcgttcccg
     7381 cgcctcgtga tggtggtctc gcgttatcgt tctcgcaaca gcgtctctgg ttcctttatc
     7441 agttggaacc gagcacgtcc gcttacaaca ttccgaccgc cgtgcgactg accggctcgc
     7501 ttgatagcga cgcgctgcga cgcacgctca atgaactcgt gcggcggcac gagatcctgc
     7561 gcacgtacta cggcatggcc gatggccggc cggcgcagtt cgttggacca ccaatcgatc
     7621 tgtcgattga gttgcttgac ctcagcgagt tggccgacgg cgatcgcgag tcgcgcatgt
     7681 tggaggtggc ggaggaagag gcgcgcaaac cattcgacct gacgcgcgcg ccgctcttgc
     7741 gcgcgggcct cgtgcggctt ggaccacagg agcacgtgtt gttgctgacg gttcatcaca
     7801 tcgtctccga cggctggtcg cagggcgtga tggtgcgcga ggtgggcaag ctctaccagg
     7861 cgttcagcga aggcaaagaa tctccactcg aagagttgcc ggtgcaatac gccgactttg
     7921 cgcaatggcg gcgcaactgg ctgaccggcg acgtgttgga ccagcagctc gcttactggc
     7981 ggcggcaact cgcgggcgat ctgccggcgc tcgatcttcc gactgaccgg ccgcgtcctg
     8041 aagtgcagag ctttcgcggc gcgacgttga cgacgacgtt gcggccgggt ttgagcgatg
     8101 cgctcggcgt cgtttgcagg cgtgaaggcg tgacgctgtt catgcttctg ctcgcggctt
     8161 tcaaagcgct gctctatcgc tacacgggac aggatgagat cgtcatcggc gcgccgatcg
     8221 cgaaccgcaa caacgtcgag accgagaacc tgatcggttt cttcgtcaac acgctggtcc
     8281 tgcgcacgga cctttccggc gatccacatt gtccggagct actggcgcgt gtgcgcaaag
     8341 tgacgctcga ggcttacgcg catcaggacc tgccgtttga agtgcttgtc gaagacctgc
     8401 agccggaacg cagcctcagc cgcaacccgc tttttcaggt gatgtttcaa ctggagaaca
     8461 cgccgaagga ggagctgccg ctgccgggtt tgacgttgag cgcagtgagc gtggcgggcg
     8521 ttgcgagcca attcgatctg agtgtcgacg tggtcgagag tgaaagcggg ttggggataa
     8581 ctgcggagta cagcacggat ctgtttgaag ctgagacgat ccgcacgctg ctgaagcgct
     8641 gggagatttt gttggaaagt ctcgcggctt cgccggacca gcgtctgaat gaattgccgc
     8701 tcatggacca agccgagcgc gatcggttgg agatcgcttc gaatcaaact gcgagaacgt
     8761 ttccgttgca atctgttgtt gagttgtttg aggcgcaagt ggagcgttcg cccgctgcgg
     8821 ttgccgttgt cggcgaaagc gagagtttga cttttgcgga attgaaccgc cgcgcgaatc
     8881 agttggccca tcatttaagg tccgccggcg ttggaccgga agttatcgtc gcggtatcgc
     8941 tcgaacgctc ggtggagatg gttgtcgcgc tgctcggcgt gctgaaggcc ggcggcgctt
     9001 acctcccgct cgatcctgct tacccacaga cgcggctcgc gttcatgctg aaggacgttg
     9061 gcgctcgatt ggtaatcacg cgagagtacc tcgagcgcaa tgccggcgag gtcgccgcgg
     9121 ggcaagtgag taatccggat caatctttca gtatcgataa tgctgcttac gtgatcttca
     9181 cctcgggatc tatgggaacg ccgaagggcg tcgtgatcac tcaccgcgca ctgtcgaatc
     9241 attgtttcgc ggtggcggat gagtatgagc tgcgggattc cgatcgtgtg cttcagtttg
     9301 cttcattgag ttttgacgtg gccgctgagg agatctttcc cacgctgctg gcaggcgcaa
     9361 cgatcgtgct gcaacgcgaa cgagtgctgg agcccgcgac gctggtgcga ttaattgagg
     9421 aagagcgagt gagcgtgctg aacctgccgg cgcgattttg gcaagagtgg ttggagggat
     9481 tggagcgcaa gg
//
LOCUS       DASWTX010000114         2118 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_152865, whole genome shotgun sequence.
ACCESSION   DASWTX010000114 DASWTX010000000
VERSION     DASWTX010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2118
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152865"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..885
                     /locus_tag="VGD38_01790"
     CDS             <1..885
                     /locus_tag="VGD38_01790"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEY0726769.1"
                     /translation="TSDLAGRVMEEESFDTNADAEITTRLIIERVNKLLRRNNGTIEG
                     IGVSLPGLVNSDGTELFVPTFNWRDTPFAKDLNAGTGLPVTIDNDANAAALAELWFGR
                     PEIREVRDFILVLVEDGVGTGIVFDGQVYRGENGAAGEFGHMTIGQGAPVACASGSRE
                     CWEAFASERSAIARFKNLSQSLNGAADVTFGDLIDQALRGEGAARTALKETARYLGIG
                     IANLIRGLAPEAVIVGGPIVRSWPVIADDIKTTVETTICRGLPSTRIIASTLGPEPTL
                     MGAISLVLASKFASVSVT"
     gene            1087..>2118
                     /locus_tag="VGD38_01795"
     CDS             1087..>2118
                     /locus_tag="VGD38_01795"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY0726770.1"
                     /translation="MSRRFGLQALLLLLSVGLLVGVHAQSSTTGNITGTVRDPQGAAV
                     PKAEITITEDKTGASRTVTANDDGFYNVAALPAGLYTVTTSPAGFKKTIVTGVDLHVN
                     ENKTVNLDLQVGQVTETVTVTSDAAPVEVRSGEVSSLISEKQVTELPLNGRNYAQLAL
                     MVPGVSPVTQAGAGGAFATRGTGLNAGVDMSVNGNQSNANLWTVDGVNNMDVGSNRTL
                     LVFPSVDAIQEFRVERNSFSAEFGQAQGAVVNLITKGGSNEFHGAFFEFYRHDSLNAN
                     NFFLNRDGADKGKLKYNNFGGNFSGPIIKNRVFFFWSEEWRREKRGQVLSSMVPTIAE
                     KQGDFSGTLT"
BASE COUNT          463 a          570 c          635 g          450 t
ORIGIN      
        1 accagcgatc tcgccggccg cgtgatggaa gaagagagtt tcgacactaa cgccgacgcg
       61 gaaatcacga ctcgcctgat catcgaacgc gtcaacaagc tactcagaag aaacaacgga
      121 acaatcgaag gaatcggcgt cagtcttccg ggcctggtga attccgatgg cacggagttg
      181 tttgtgccga cgttcaactg gcgcgacact ccgttcgcaa aagacttgaa cgccggaacc
      241 ggtttgccgg tcacgatcga caacgacgcc aacgccgcgg cgctcgcgga gctgtggttt
      301 ggccggcctg agattcgtga agtacgagat tttattctcg tgctcgtcga agatggtgtt
      361 ggtacgggta tcgttttcga cggacaggtt tatcgcggtg agaacggcgc ggcgggcgag
      421 tttggtcaca tgacaatcgg gcagggcgcg ccggtcgcgt gtgcttcggg tagtcgtgaa
      481 tgttgggaag cgtttgcgtc cgaacgttcg gcaatcgcgc gcttcaagaa cctgtcgcag
      541 agtttgaatg gcgcggctga cgtcacgttc ggcgacttga tcgatcaggc attgcgcggt
      601 gagggagcgg cacgaacggc gttgaaagag acggcgcgtt atctcgggat cggcatcgcg
      661 aacctgattc gtggcctcgc gccggaggcc gtaatcgtcg gtggtccaat cgttcgttcg
      721 tggccggtga ttgccgacga catcaaaacc acggtcgaga ctacgatctg ccgcggctta
      781 ccttcgacgc gcatcatcgc ctcgacgctc ggtcccgagc cgacattgat gggcgccatc
      841 agcctcgtac ttgccagtaa atttgcttcc gtctccgtta cttgagcggt aaagtttgtt
      901 ggccgccaaa acaaagcatg tattactgaa atttatcttg acaagctcat gcagaagtat
      961 taaatacttt tgccagcctc tgcaacaaag tgcactcata caaaagttgg atagctaggt
     1021 aggcctgtag tagcagtacc ggttcagaag ttcacatcgc aaaagagagt tctgaggagg
     1081 tgcggtatgt cgagaaggtt tggattgcag gcgttgttac tcctgcttag cgtgggtctg
     1141 cttgtcggcg tacacgcgca atcgagcacc accggcaaca tcactggcac cgttcgcgat
     1201 ccacaaggcg cggcggtgcc aaaagctgaa atcaccatca ctgaagacaa gacgggcgcg
     1261 tctcgcacag tgactgcgaa cgatgacggc ttctacaacg tcgcggcttt gcccgccggt
     1321 ctttacaccg ttactacatc gccggccgga ttcaagaaga cgatcgtgac cggagttgac
     1381 ctgcacgtca acgaaaacaa gaccgtcaat cttgacctgc aagtcggaca agtcacggag
     1441 accgtgacag tcaccagcga tgcggcgccg gttgaagtgc gcagcggtga ggtcagcagt
     1501 ctcatctccg agaagcaggt gaccgagctg ccgttgaatg gccgcaacta cgcacagctc
     1561 gcattgatgg ttcccggtgt ttcgccggtt acgcaggcag gcgcgggggg cgcgtttgct
     1621 actcgcggta ctggtctcaa cgccggcgtt gacatgtccg tcaacggcaa ccagtcaaac
     1681 gcgaacctgt ggacggttga cggtgtcaac aacatggacg tcggttcgaa ccgcacgttg
     1741 ctcgtgtttc cgtcagtcga cgccattcag gagtttcgcg ttgagcgcaa cagcttcagc
     1801 gcggagttcg gccaggcgca gggcgcggtg gtcaacctga tcaccaaggg cggctccaac
     1861 gagtttcacg gtgcgttctt tgagttctac cgtcacgatt cgctgaacgc gaacaacttc
     1921 ttccttaacc gcgatggcgc cgacaagggc aagttgaagt acaacaactt cggcggcaac
     1981 ttcagtggtc caatcatcaa gaaccgcgtg ttcttcttct ggtcggaaga gtggcgtcgt
     2041 gaaaagcgcg gtcaggtgct ttcctcgatg gttcccacga ttgctgaaaa gcaaggtgac
     2101 ttcagcggaa cgttgact
//
LOCUS       DASWTX010000115         1869 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_391281, whole genome shotgun sequence.
ACCESSION   DASWTX010000115 DASWTX010000000
VERSION     DASWTX010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_391281"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..944)
                     /locus_tag="VGD38_01800"
     CDS             complement(<1..944)
                     /locus_tag="VGD38_01800"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family transcriptional regulator"
                     /protein_id="HEY0726771.1"
                     /translation="MRRLDLRKAQAARLNTIRDINRQIVLNYVREREPISRAEIARET
                     ALQRSTISAIVEDLTREGLVEEVGEGESTGGRRPTLLKLRAVGPIAVGVSITPTCTTI
                     ASSDLAGRVIDQQEFLTDPDKTLNQVISAVREFNARYQGSIEGVGVSLPGLVDPSTGT
                     ALYVPYFPWRDLAVSDQIASAVGVPVVIDNDANAMALAELWFGRPEVNDARDFIMVLV
                     AEGVGTGIIFDGQVYRGQRGAAGEFGHMVIGANAPVPCSCGSDHCWEAFASERAAIAR
                     YRKLARIPSKTPISFKEVVDRALSGEEHAKAALVETAR"
     gene            complement(987..>1869)
                     /locus_tag="VGD38_01805"
     CDS             complement(987..>1869)
                     /locus_tag="VGD38_01805"
                     /inference="COORDINATES: protein motif:HMM:NF019229.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HEY0726772.1"
                     /translation="LVINDSTPNQLYINKGNGTFEEAGYPSGIAVNENGREQAGMGLA
                     VGDYDNDGRVDFHITNFSDDSNTLYHNDGDTNFTDVTFQSGLGEVSIPFLGWGTSFLD
                     YDNDGWQDLFVVNGHVYPVVDAHQWGTSYAQQPLLFRNLKGKFERVGAPPGSALANSW
                     PGRGLAVGDLDADGRLDLVINNLDGKPAVLRNTAVSTGHWLRLKLIAKAPRDAIGSVA
                     YVTTGKIRQRQDVFSGAIYCSQNEMTLHFGLGAATKVDKLEIRWPDGSTEVVEVGTVD
                     KTITITQRGAEGKPAKQ"
BASE COUNT          367 a          590 c          522 g          390 t
ORIGIN      
        1 taacgtgccg tctcgaccag cgcggctttc gcgtgctctt ccccgctcag cgcgcggtcg
       61 acgacttctt tgaaactgat cggagtctta ctcgggatac gtgcgagctt ccggtaacgc
      121 gcaatcgccg cgcgctcgga agcaaacgct tcccagcaat ggtcgctgcc acacgagcac
      181 ggcaccggcg catttgcgcc gatcaccatg tggccaaact caccggcggc gccacgctgt
      241 ccgcgataaa cctgaccgtc aaaaatgatt ccggtgccga caccttcagc cacgagcacc
      301 atgatgaagt cgcgcgcgtc gttaacttcg ggccttccga accacaactc cgcgagcgcc
      361 atcgcattcg cgtcgttatc gatcaccacc ggcacgccga cagcgctggc gatctgatcg
      421 gacaccgcga gatcgcgcca cggaaaatac ggaacgtaga gcgcggtgcc cgtagaagga
      481 tcgactaacc ccggaagact cacgccgacg ccctcgatcg atccctggta gcgcgcgttg
      541 aactcacgca ccgcgctgat cacctggttc agagtcttgt ccggatcggt gagaaactcc
      601 tgctgatcga tcacgcgccc ggcaagatcg ctgctcgcga tcgtcgtaca cgtcggcgta
      661 atcgaaactc cgacggcgat tggcccaacc gcacgcagct tcaacaacgt cgggcggcgt
      721 ccgccggtcg actccccttc accgacctcc tcgaccaacc cttcgcgcgt gagatcttcg
      781 acgatggccg agatcgtcga acgctggagc gcggtttcgc gcgcgatctc cgcacgcgag
      841 atcggctcgc gctcgcgaac gtagttcaac acgatctgcc gattgatgtc gcggatcgtg
      901 tttaggcgag ctgcctgtgc ttttctgaga tcgagtcgtc gcataggggg aaacagaact
      961 taccacagag gaacgggaat cccgaactat tgtttcgcgg gtttaccttc ggccccacgt
     1021 tgggtgatcg tgatggtttt atcgaccgtg ccgacttcaa caacttccgt gctgccgtcg
     1081 ggccagcgga tttcgagttt atcgaccttc gtcgcggcgc ccaaaccgaa gtgcaacgtc
     1141 atttcgtttt gcgaacagta gatcgcgccg ctgaagacgt cctgccgctg tctgattttt
     1201 ccggtcgtaa cgtaagcgac actgccgatc gcatcgcgcg gcgctttcgc gatcaacttc
     1261 aaacgcagcc agtgtccggt tgacacggct gtgttgcgca ggactgccgg cttgccgtcg
     1321 agattattga tcaccagatc aagccggcca tcagcgtcga gatctccgac agccaatccg
     1381 cgtccgggcc acgagttcgc caacgcactg cccggcggcg cgccgacgcg ctcgaatttt
     1441 ccttttagat ttctaaacag cagcggctgt tgcgcgtaac tcgtgcccca ctgatgcgca
     1501 tcaaccaccg ggtacacgtg cccgtttacg acaaacaggt cctgccagcc gtcgttgtcg
     1561 tagtcgagaa aactcgtgcc ccaaccaaga aacggaatcg atacttcgcc gagtccggat
     1621 tgaaacgtca cgtcagtgaa gtttgtgtcg ccgtcgttgt gatagagcgt gttcgagtcg
     1681 tcggagaagt tggtgatgtg aaaatcgacg cgtccgtcgt tatcgtaatc gccgacggcg
     1741 agacccatgc ctgcttgttc gcgcccgttt tcgttcaccg cgatgcccga cggatagccg
     1801 gcctcttcaa acgtgccgtt gcctttgttg atgtaaagct ggtttggagt cgagtcgtta
     1861 atgacgagc
//
LOCUS       DASWTX010000116         3225 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_391288, whole genome shotgun sequence.
ACCESSION   DASWTX010000116 DASWTX010000000
VERSION     DASWTX010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3225
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_391288"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1453
                     /locus_tag="VGD38_01810"
     CDS             <1..1453
                     /locus_tag="VGD38_01810"
                     /inference="COORDINATES: protein motif:HMM:TIGR03710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase subunit alpha"
                     /protein_id="HEY0726773.1"
                     /translation="DDNSLAGYRIHKLPISTLNMNALKGNVDLSRKEIDRSKNFFALG
                     VLYWLYDRPMDNTLNWIRNKFAKNPELAKANEIALKTGYNFADTTEVFTTHYTVKKAK
                     IAPGKYRKITGNEATAIGFIAASQLSGRPLFYGSYPITPASDILHELSRHKTLGVRTF
                     QAEDEIAAVCAAIGASFAGQIGLTGTSGPGVALKQEAIGLAVMTELPLVIVNVQRGGP
                     STGLPTKTEQADLFQAVWGRNGECPAIVVAPATPADCFHMAIEAVRLAFKYMSPVFYL
                     SDGYLANGAEPWAVPEMDALPKIEVTFARDPTNFMPYSRDPETLARPYALPGTPGLEH
                     RIGGIEKQHITGNVNYDPENHHLMVKLRQEKVDRAVNDIPLIEVMGEKTGKVLVLGWG
                     STYGSISSAVEKMQREGKSVSAAHLRYLNPFPRNLGEVLAGFETVIVPEMNLGQLCTM
                     IRAKFLVDAVPFSKVKGRPFQIREIVRKVEEYL"
     gene            1450..2031
                     /locus_tag="VGD38_01815"
     CDS             1450..2031
                     /locus_tag="VGD38_01815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726774.1"
                     /translation="MMENVGVRPVGEIYAEGLRYFMGEGTVNKTLARLSSDLEEHGID
                     YAVIGAVALLAHGYPRFTEDIDLVMTAEGLEKFHEELKSTVDGVSIEVMTTGEFPGDG
                     KPKPVSMPEPTAASTEIDGIRFVTLEKLIELKLASGMSAPDRLKDLADVQELIKIRKL
                     DADFALKLDPYVREKYRELETAVRNSTSIQEKG"
     gene            2089..2658
                     /locus_tag="VGD38_01820"
     CDS             2089..2658
                     /locus_tag="VGD38_01820"
                     /inference="COORDINATES: protein motif:HMM:NF017496.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Uma2 family endonuclease"
                     /protein_id="HEY0726775.1"
                     /translation="MSTTSTALMTAEEFMELPEDGYRYELINGELERMPAPGFPHGRI
                     TLRLMIPLGQFVWDHDLGEVFDYSGFQLTVGPDTVLGPDAAFVSKERLKEAKEDRGYW
                     PGPPDIAVEVLSPSDRPSRVTTRISLWFTHGVKQLWVVNQKTRTVTIYRSPEDATTFS
                     GSDYLEAHDLLPGFRLSLDRIFSTSIQEK"
     gene            2655..>3225
                     /locus_tag="VGD38_01825"
     CDS             2655..>3225
                     /locus_tag="VGD38_01825"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEY0726776.1"
                     /translation="MMSTQSNGHSGNGNGNKLPGEVVSAESDAGSSVAGKVAPPPGQL
                     KKADFVSDQEVRWCPGCGDYAILNNVQKVMPELGIPREKIVFVSGIGCSSRFPYYMNT
                     YGFHGIHGRAPAIATGIKCANPELSVWVITGDGDALSIGGNHFMHAIRRNLDINYILF
                     NNRIYGLTKGQYSPTSEFGKKTKSTPAGTI"
BASE COUNT          742 a          830 c          970 g          683 t
ORIGIN      
        1 cgacgacaat tcgctcgccg gttatcgcat tcacaagttg ccgatctcga cgctcaacat
       61 gaatgcgttg aaaggcaacg tcgatttgtc gcgcaaggag atcgaccgtt cgaaaaactt
      121 cttcgcgctc ggcgtgctct actggctgta cgaccggccg atggacaaca cgctcaactg
      181 gatcagaaac aagtttgcca agaacccgga gctggcgaag gcgaacgaga tcgcgttgaa
      241 gaccggttat aacttcgccg acacgactga agttttcacc acgcactaca cggtcaagaa
      301 agcgaagatc gcgccgggca aatatcgcaa gatcaccgga aacgaagcga cggcgattgg
      361 gttcatcgcg gcttcacagc tttcgggccg gccgttgttc tacggttcgt atccgatcac
      421 gcctgcgtct gacattctgc acgagctctc gcgtcacaag actttgggcg tgcgaacgtt
      481 tcaggctgaa gacgagatcg cggctgtttg cgcggcgatc ggcgcgagct tcgcgggtca
      541 gatcggtttg acgggaacgt ctggtcccgg cgtcgcgctg aaacaggaag caatcggcct
      601 cgcggtgatg actgaacttc cgctggtgat cgtcaacgtt cagcgcggtg gaccatcgac
      661 gggtttgccg accaagacgg agcaggcgga tctatttcag gcggtttggg gtcgcaacgg
      721 tgagtgtccc gcgattgtag tcgcacctgc gacgccggct gattgtttcc acatggcgat
      781 cgaggcggtg cggctggcgt tcaagtacat gtcgccggtg ttttatctgt ctgatggtta
      841 tctcgcgaac ggtgcggagc cgtgggcggt gccggagatg gatgcgttgc cgaagattga
      901 agtgacgttt gcgagagatc cgacgaactt catgccttac tcgcgcgatc cggaaacgct
      961 ggcgcgtccg tacgcgttgc cgggcacgcc ggggttggag catcgcatcg gcggtatcga
     1021 gaagcagcac atcaccggta acgtcaatta cgatcccgag aaccatcact tgatggtgaa
     1081 gttgcggcag gaaaaagtgg atcgtgcggt gaacgatatt ccgctgattg aagtgatggg
     1141 cgagaagacc ggcaaagtgc tggtgcttgg ttggggttcg acctacggct cgatcagttc
     1201 ggcggttgag aagatgcagc gcgagggcaa gagtgtttcg gccgcgcacc tgcgttatct
     1261 gaatcccttc ccgcgcaatc ttggtgaagt gctggcgggc ttcgaaaccg taatcgtccc
     1321 cgagatgaac ctcggccaac tctgcaccat gatccgcgcg aagttcctgg tcgacgcagt
     1381 gcccttctcg aaagtgaaag gccgcccatt ccagattcgg gagattgtca gaaaggttga
     1441 agagtatttg tgatggagaa tgttggcgta agaccagttg gcgagatcta cgctgaaggt
     1501 ctgcgctact ttatgggaga aggaaccgtc aacaaaactc tcgcacgtct ctccagcgat
     1561 ctcgaggagc acggaattga ctatgcggtg attggcgcag tggccttgtt ggcacatggc
     1621 tatccccggt tcactgagga cattgacctt gtcatgactg ccgagggctt ggagaagttt
     1681 cacgaggagc ttaagtccac agtggacggc gtcagcattg aagtgatgac aacgggtgaa
     1741 tttcctggtg acggaaaacc taaacccgtg agcatgccgg aacccacggc agcctcaacg
     1801 gagatcgacg gcatcaggtt tgtcacgctc gagaaactga tcgagttgaa gctggcgtcg
     1861 gggatgtcgg cgccggatcg gttgaaagat ctcgcagacg ttcaggagtt aataaagata
     1921 cgcaaactcg acgcggactt cgctctcaaa ctcgacccgt atgtgcgaga gaaatatcgc
     1981 gagttggaaa cggcagtaag gaatagcacg tcaattcagg agaaaggttg aagagtattt
     2041 gtgatgttag agcgttcctc acaacgcgct cacgttagga gcaagaagat gagtacgacc
     2101 tcaacagcgc tgatgaccgc agaggagttt atggaactcc ctgaggatgg ttatcgctac
     2161 gaacttatca atggagaact tgaaaggatg ccagcacccg gatttcctca cggccggatt
     2221 accttgcggc ttatgatacc gctaggacag tttgtttggg accacgattt aggagaggtt
     2281 ttcgactatt cggggttcca gttgacggta ggtccggaca cggttttggg tcccgacgcg
     2341 gcttttgtca gcaaagagcg tcttaaagaa gcaaaagaag acagaggcta ttggcccggc
     2401 ccgccggata tcgcggtgga agtcttgagt ccaagcgacc gaccctcgcg tgtaacgaca
     2461 agaatctcac tttggtttac tcacggcgtg aaacagttgt gggtcgtaaa ccagaaaacc
     2521 cgcacggtaa cgatctaccg ctcgcccgag gacgcgacaa ccttttcagg atctgattac
     2581 ctcgaagcac acgaccttct gcccggtttc aggctttcac tcgataggat ttttagcacg
     2641 tcaattcagg agaaatgatg agtacacaga gtaacggtca tagtgggaat ggaaatggta
     2701 acaagctgcc gggcgaagtg gtttccgccg agagtgatgc cggttcgtct gtagccggaa
     2761 aggtcgcgcc gcctccggga cagttgaaga aggccgactt cgtttccgac caggaagtgc
     2821 gctggtgccc gggctgcggc gactacgcca ttctcaacaa cgtgcaaaaa gtcatgcccg
     2881 aactcggcat tccgcgcgag aagatcgtgt tcgtgtccgg catcgggtgt tcttcgcgtt
     2941 tcccctacta catgaacacc tacggcttcc acggcattca cggccgcgcg ccggcaatcg
     3001 cgacgggtat caagtgcgcg aatccggagc tcagcgtgtg ggtgatcacc ggggacggcg
     3061 acgcgctctc gatcggtggc aaccacttca tgcacgcgat ccggcgcaat ctcgacatca
     3121 actacattct cttcaacaac cgaatctacg gtttgaccaa aggtcagtac agcccgactt
     3181 ccgagtttgg caagaagacg aaatcgacgc ctgcgggcac gatcg
//
LOCUS       DASWTX010000117         3176 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_66621, whole genome shotgun sequence.
ACCESSION   DASWTX010000117 DASWTX010000000
VERSION     DASWTX010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3176
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66621"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..513
                     /locus_tag="VGD38_01830"
     CDS             <1..513
                     /locus_tag="VGD38_01830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004211302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TCP-1/cpn60 chaperonin family protein"
                     /protein_id="HEY0726777.1"
                     /translation="ATETEMKEKKARVEDAMHATRAAVEEGIVPGGGVALVRAARALE
                     KFAIYKDGEGDADEQIGVNIVRRALEEPLRQIVQNAGKEGAVVVERVRTEKNENIGFN
                     AATEVFEDLVKAGVIDPAKVTRTALQNAASIAGLMLTTEAMVSEIPEDEKGGGSGMPG
                     GMGGMSGMGM"
     gene            complement(542..772)
                     /locus_tag="VGD38_01835"
     CDS             complement(542..772)
                     /locus_tag="VGD38_01835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726778.1"
                     /translation="MKMLFMGNIDSRRLARAYIALAFAQDVAKGYVNERREEATLHPL
                     LTALDMSSRLLEEILEDVLPEEELEPQITQIM"
     gene            complement(775..1269)
                     /locus_tag="VGD38_01840"
     CDS             complement(775..1269)
                     /locus_tag="VGD38_01840"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEY0726779.1"
                     /translation="MNIIVNAVISFIVALVLHELGHFFAARLCGVPIKQAGLGWGPKL
                     CGVRVNNIDYQLRALPLGAFIRMDMVALQARPLFQQLFVLGAGVGVNLLLCVLTWGTL
                     FSTLNLALAVGNMVPFYQLDGWKSAMVICRRLFGRNAFVEWGLTLGGGAIALSVFIRA
                     FLNF"
     gene            complement(1253..1627)
                     /locus_tag="VGD38_01845"
     CDS             complement(1253..1627)
                     /locus_tag="VGD38_01845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726780.1"
                     /translation="MCNGGFVHPLDAHSRIETIFNFVLTPVSDWNSANITPIYLDAET
                     SQENIVAIRLYLSALTFVFLLLVWFGRGVGVLEALVVTSALVYLILDAREHLQLVKTD
                     VELLQQLEAKVSVLIRTNEHNR"
     gene            2022..>3176
                     /locus_tag="VGD38_01850"
     CDS             2022..>3176
                     /locus_tag="VGD38_01850"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY0726781.1"
                     /translation="MPLATPPVFDGWADTHTTRRDRPAAQTLEPEVPAPAGGHRAPML
                     VGQSPAMRKLFSVIERVAPTDASVLITGATGTGKELAARAIHDKSPRRDGAFVDINCS
                     AIPETLIEAELFGHQRGTFTGAHENRSGLFEKASGGTLFLDEVDALNLSAQAKLLRVL
                     QERTVRRIGARANIAIDVRIISATNCDLAQAVAQGRFRPDLYYRLRVLPLHLPELCTR
                     TGDVSLLVDHFLQMKSARNGQPARKFTPEAMQALCEYPWPGNVRELENTIEYALAIGL
                     EDELDVMDLPPEILDAHRQTSADNFRQVLQAYMNDTVPLAEVEKRYILSVLQQFGGNQ
                     VRAAAALGIDRSKLYRRLKQYGVMAVRFLQEEDMNGMQLLSRREVADHPTD"
BASE COUNT          758 a          882 c          884 g          652 t
ORIGIN      
        1 gcaaccgaga ccgagatgaa agagaagaag gcacgtgttg aggatgcgat gcatgccacg
       61 cgcgccgcgg tcgaggaagg catcgttccg ggtggcggcg tcgcgctggt tcgtgcggca
      121 cgcgcgctcg agaagttcgc catttacaaa gacggcgaag gcgatgccga cgagcagatc
      181 ggcgtgaaca tcgtccgtcg cgcgttggaa gagccactgc gccagatcgt tcagaacgcc
      241 ggtaaagaag gcgccgttgt agttgagcgt gttcgtaccg agaagaacga gaacatcggc
      301 ttcaacgcag ccactgaagt cttcgaagat ctcgtgaagg cgggcgtgat cgatccggcc
      361 aaggtgactc gcactgcgct tcagaacgca gcttcgatcg ccggcttgat gctgacgact
      421 gaagcgatgg tttctgagat tcctgaagac gaaaagggcg gcggttccgg aatgccgggc
      481 ggtatgggcg gcatgagcgg aatgggcatg taagcaacag cttccacaga ttacacagat
      541 ctcacatgat ctgtgtaatc tgtggttcta gttcttcctc cggtaacaca tcctccagaa
      601 tttcttccaa cagcctcgac gacatatcaa gcgcagtcaa caacgggtga agcgtcgctt
      661 cttcacggcg ctcgttgacg taacctttgg cgacgtcctg agcgaaggcg agggcgatgt
      721 aggctctcgc gagccggcgg ctatcgatgt tgcccatgaa cagcattttc atctttagaa
      781 gttgaggaaa gcccgaataa agactgacaa agcaatcgcg ccaccgccga gcgtcagtcc
      841 ccactcgaca aacgcgttac gtccgaataa gcgccggcag atcaccatcg cgcttttcca
      901 accatcgagc tggtagaacg gcaccatgtt tccgaccgcc agcgccaggt tgagcgtgct
      961 gaagagcgtg ccccacgtga gaacgcaaag cagcaggttc acgccaacac ccgcgccgag
     1021 tacaaacaac tgttgaaaca acggccgtgc ttgcagcgcg accatgtcca ttcgtatgaa
     1081 cgcgcccagc ggcaacgcac gcagttgata atcgatgttg ttgacgcgaa cgccgcaaag
     1141 cttcggtccc caacccagtc ctgcttgttt gatcggcaca ccgcaaagac gcgccgcaaa
     1201 gaagtggccc aactcgtgaa gcacgagcgc gacgataaaa ctgatgacgg cgttaacgat
     1261 tatgttcatt tgtacggatc aggactgaca cttttgcttc gagttgttgc aatagctcga
     1321 catctgtttt aacgagttgc aaatgttcgc gggcgtcaag gatcaagtaa acgagagcgg
     1381 atgtcactac cagtgcctca agcactccca cgccacgacc gaaccagacg agaagtagaa
     1441 acacgaatgt cagtgctgac aggtaaagcc tgatagccac gatgttctcc tgacttgtct
     1501 ctgcatcgag atagataggt gtaatgttcg ctgaattcca atcgctaacg ggagtcaata
     1561 caaagttgaa aatcgtctcg attctagaat gcgcgtccaa aggatggaca aagcctccgt
     1621 tgcacacgac tcctgacggc gttttcctgc gtagtttgtt aggaaatgga ccaatttcgc
     1681 gcagtggccc tagagttgcg acgtaggcgc atcggttctt cgtcttttag caacacggac
     1741 agttcgagtt agcaccgcag ctttacccaa aaccgtaagg tctcgttcgg tccacgaaat
     1801 taatcaacac aaacaaactc gtacccggac tctttaccag caaggatcca ggcaacgaag
     1861 gaaagcaccc tctcagatgg aagtattcgg aagagtagtt tctttaggcg ttttgttatt
     1921 ccagtttgaa aggagtgctc ctggagatta actcccgaca acggaaaaac tcgccggagc
     1981 ataccccaag ggatttacta tctttaggag tttgttgatt aatgcccctc gcaactcccc
     2041 ccgtctttga cggctgggca gatacccaca cgactcgccg agatcgtccg gccgcgcaaa
     2101 cgctcgagcc ggaagttccc gcacctgcag gcggtcaccg cgccccaatg ttggtgggcc
     2161 aatcgcccgc gatgcggaaa ctgttttccg tcatcgaacg cgtcgctccg actgatgctt
     2221 ccgtcctgat cactggcgcg accggcacgg gcaaggagct cgccgcgcgt gcaattcacg
     2281 acaagagccc gcgacgtgac ggagcgtttg tcgacatcaa ctgctcggca attcccgaaa
     2341 cactgatcga agccgaactc ttcggccacc agcgcggtac tttcacaggc gcacacgaaa
     2401 accgcagtgg actttttgaa aaagcatcag gcggtacgct ctttcttgac gaagtcgacg
     2461 cgttgaatct ttcagcgcag gcgaagttgt tgcgcgtgtt gcaggagcgc acggtgcgcc
     2521 gcatcggtgc gcgcgcgaac atcgcgatcg acgttcgcat catctcggcc accaactgcg
     2581 atctcgcgca ggcagtcgca caaggccgct tccgtcccga tctttactat cgtttgcgag
     2641 tgctgccatt gcacttaccc gaactgtgca ctcgcactgg tgacgtcagt ttgttggtcg
     2701 atcatttctt gcagatgaag tcggcgagaa acggccagcc ggcgagaaaa tttacgcccg
     2761 aagcaatgca ggcgctctgc gagtatccgt ggcccggcaa cgttcgtgaa ctcgaaaaca
     2821 cgatcgagta tgcactggca atcggtctcg aagatgaact ggacgtgatg gacctgccgc
     2881 cggagatact ggatgcgcac cggcaaacga gtgcggataa cttccggcaa gtgcttcagg
     2941 cttacatgaa cgacacggtc ccacttgctg aagttgagaa gcgctacatt ctttcggtgc
     3001 tgcagcagtt tggtggaaac caggtccgcg ccgcagcagc tctcggaatc gatcgcagca
     3061 agctctatcg ccggctcaag cagtatggtg tgatggcagt tcggttcttg caggaggaag
     3121 acatgaacgg tatgcagttg ctttcgcggc gcgaagtcgc ggaccatcct accgat
//
LOCUS       DASWTX010000118         3306 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_45026, whole genome shotgun sequence.
ACCESSION   DASWTX010000118 DASWTX010000000
VERSION     DASWTX010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3306
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45026"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(114..1490)
                     /gene="murD"
                     /locus_tag="VGD38_01855"
     CDS             complement(114..1490)
                     /gene="murD"
                     /locus_tag="VGD38_01855"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEY0726782.1"
                     /translation="MEVAGKKVLIIGAARSGIAAARFLVERGAVVALNDQKPIEKWSA
                     EALALKEVGVGLLPGEAPSWLLDQIELVVVSPGVPATIIPIRYAERAGAEVIGEVELA
                     ACFLKGHVVAITGSNGKTTTTSLIGELLRDAGFTVQVGGNIGRALISMVESSRDDGWT
                     VAELSSFQLETIKTFRPSIAVVLNVTPNHMDRYESFNDYAAAKHRIFMNQTEEDVAVL
                     NADDETVSSWADGLRAKVMTFSVRKELERGVFLRGDELVFRWDEGEQDLLRVSEMKLR
                     GLHNVENVAAALTVGIAAGAKIELMRETVKAFNPVEHRLEFVDEIRGVKFYNDSKATS
                     VDATLKALEAFANDAGQVVLILGGKGKKAPYAPLAPLVREKVRKLVLIGEDAETIANE
                     LGEYAQFERATDMKDAIARSFEAAEKGDVVLLAPACASFDMFESFEHRGKVFKGDVAD
                     LKARWHAN"
     gene            complement(1490..2647)
                     /gene="mraY"
                     /locus_tag="VGD38_01860"
     CDS             complement(1490..2647)
                     /gene="mraY"
                     /locus_tag="VGD38_01860"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEY0726783.1"
                     /translation="MIYYFLYELLYIHFKDKDWYLVKALNVFQYVTFRTAYATITALL
                     ISLFFGGRLIEALKEWNVGQQIREEGPQAHMTKRGTPTMGGVLIVGSVLISTLLWARL
                     SSVYVWIAMLATLFFALVGFLDDYSKMAKKRSLGLTGRQKLLGQLLIAVGVWAVLFMS
                     VKFLGGTGYSWNISIPFFKATADPYGKTFIGPYLYLILIAVVLLGSSNAVNLTDGLDG
                     LAISITFIAMSALTGFTYLSSDARWAAYLDLTHRPEAAELTVFCGAMAGASLGFLWYN
                     APPAQVFMGDVGSLAIGGAMGTVAVLTKQEFMLLMVGGVFVIEAVSVMLQVSVFKMTK
                     RTTGTGRRLFKMTPLHHHFEMQDWKESKIVFRFLILAILFALLSLSTLKLR"
     gene            complement(2648..>3306)
                     /locus_tag="VGD38_01865"
     CDS             complement(2648..>3306)
                     /locus_tag="VGD38_01865"
                     /inference="COORDINATES: protein motif:HMM:NF014874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cyanophycin synthetase"
                     /protein_id="HEY0726784.1"
                     /translation="VSASEIDAQTLGRINFRLRTPLGDAQASLAMSGRHNLSNALAAS
                     AVGTAFSLTAEQIAHALSSAQPPKMRGEVFDFAAGFTVIDDSYNSNPRSLVNMVRTMA
                     EGGRGRKRLVVIAGEMLELGPDEVALHREAGREIAAYGIDVLWGVRDLAREIVAGAKE
                     AGLSAGKFFNSSDEAAAQLIKEVKEGDLILVKGSRGVATDKIVKALREQFPLAGEDQN
                     "
BASE COUNT          757 a         1137 c          755 g          657 t
ORIGIN      
        1 gtaaaactga ttgccgttct ccttcgaggc gatcacggct gacgcgctgt agaccatcac
       61 cacgccgatg agcgcgagtg ccgtcgtcgc cgcgaagagc catttgtctg gagctagttt
      121 gcgtgccatc tggcttttaa gtccgcaaca tcccctttga aaactttccc tcgatgttcg
      181 aagctctcga acatgtcgaa gctcgcgcag gccggcgcga gcagtacgac gtcgcccttt
      241 tcagccgcct cgaaagatct cgcgatcgcg tctttcatgt cagttgcgcg ttcgaactgc
      301 gcgtattcgc cgagttcgtt tgcgatcgtt tccgcgtctt ctccgatcag cacgagcttt
      361 cgcacctttt cgcgcacgag cggtgcgagc ggcgcgtacg gcgctttctt gcctttgccg
      421 ccgagaatta aaacaacctg gcccgcatcg ttcgcaaacg cttcgagcgc tttcaacgtc
      481 gcgtcaacgc tcgtcgcttt cgagtcgttg taaaacttca cgccgcggat ctcatcaacg
      541 aattcaagcc gatgctcgac gggattgaac gccttcaccg tctcgcgcat aagttcaatc
      601 ttcgcccccg ctgctatccc aaccgtcaac gccgccgcga cgttctcgac gttgtgaagc
      661 ccgcgcaact tcatctcact cacacgcaac agatcctgtt cgccttcgtc ccaacgaaaa
      721 accagctcgt caccacgcag aaacactccc cgttcaagct ctttccgcac gctgaaagtc
      781 atcaccttcg cgcgcaaccc atccgcccac gacgaaaccg tctcgtcatc cgcattcaac
      841 accgcgacgt cttcctccgt ctggttcatg aagatgcgat gcttcgccgc agcgtaatcg
      901 ttgaagctct cgtaacggtc catgtgattc ggcgtcacgt tcaaaacaac tgcgatcgac
      961 gggcgaaacg ttttgatcgt ctccaactga aaactagaca actccgccac ggtccaaccg
     1021 tcgtctcgcg agctctcgac catcgaaatc agcgcgcggc cgatgttccc accgacctgc
     1081 acggtaaacc ccgcgtcgcg caacaactcg ccaatcaacg acgtcgtggt cgtcttgccg
     1141 ttgctgcccg tgatcgcgac gacgtgtcct ttcaaaaaac acgcggcgag ctcgacttcg
     1201 ccgataacct ccgcgccggc acgttccgca tatcgaatcg gaatgatcgt cgccggaaca
     1261 cccgggctca ccaccaccaa ctcaatctgg tccaacaacc aactcggcgc ttcacccggc
     1321 aacagcccca cgccgacttc cttcaacgcc aacgcttcag cggaccactt ctcgatcggc
     1381 ttctgatcgt tgagcgccac aaccgcgccc cgttccacca gaaaccgcgc cgccgcaatc
     1441 ccactgcgcg ccgccccaat tatcaaaacc tttttgcccg ctacttccac tacctgagtt
     1501 tcaacgtcga cagactcaac aacgcaaaca gaatcgcgag gatcaaaaat cgaaacacga
     1561 tcttcgactc cttccaatcc tgcatttcaa agtggtgatg caacggcgtc atcttgaaca
     1621 aacgccgccc ggtgcccgtc gtgcgcttcg tcatcttgaa gaccgaaacc tgcaacatca
     1681 ccgagaccgc ctcgatcaca aacacgccgc ccaccatcaa caacataaac tcctgtttcg
     1741 tgagcaccgc tacagtgccc atcgccccgc cgatggcgag gcttcccacg tcacccataa
     1801 agacctgcgc gggcggcgcg ttgtaccaga gaaaaccaag actcgccccc gccatcgcac
     1861 cgcaaaacac cgtcagctca gccgcctctg gccggtgcgt caaatcgaga tacgcggccc
     1921 aacgcgcgtc gctgctgaga taggtaaaac ccgtcaacgc gctcatcgca ataaaagtga
     1981 tgctgatcgc cagcccatcc aaaccatccg tgaggttcac cgcgttcgag gaacccaaca
     2041 gcactaccgc aatcaggatc aaatataaat aagggccgat aaaggtcttt ccgtaaggat
     2101 cggccgtggc tttgaaaaac ggaatactga tattccacga ataacccgtc ccacccagaa
     2161 acttgaccga cataaaaagg acggcccaaa cacccaccgc aatcagcaac tggcccaata
     2221 gcttctgccg ccccgtcaac ccgagactgc gtttcttcgc catcttcgag tagtcgtcaa
     2281 gaaaaccgac gagggcaaag aacaacgttg cgagcattgc gatccaaacg taaacactcg
     2341 aaagccgcgc ccacagcagt gtcgagatca acaccgaacc aacgatgagc acgccgccca
     2401 ttgtcggcgt gccgcgtttg gtcatgtgtg cctgcgggcc ttcttcgcga atctgctggc
     2461 ccacgttcca ttctttcaac gcttcgatca gcctgccgcc gaagaagagc gatatcagca
     2521 gcgccgtgat cgtcgcgtac gcggtgcgaa acgtgacgta ctgaaagacg ttgagggcct
     2581 ttacgagata ccaatcctta tccttgaaat ggatgtaaag gagctcgtaa aggaagtagt
     2641 agatcattta gttctggtct tctcccgcca acggaaactg ctcccgcaac gctttcacga
     2701 tcttgtccgt cgctacgccg cgcgaaccct tcaccaaaat cagatcaccc tctttgactt
     2761 ccttaatcaa ctgcgccgcc gcctcatcgg aagagttgaa aaacttcccc gccgaaaggc
     2821 ccgcctcttt cgctcccgcg acgatctctc gcgccaaatc tcgcacaccc caaagcacat
     2881 caatcccgta tgccgcgatc tctctgccgg cctcgcggtg caaagcgact tcatccggtc
     2941 cgagctcgag catctctccg gcgatcacga ccagtcgctt acgaccacgg ccgccttcgg
     3001 ccattgtccg caccatgttc accaaagaac gcggattgga gttgtacgaa tcgtcaatca
     3061 ccgtgaagcc cgccgcgaaa tcgaaaactt ctccgcgcat cttcggcggt tgcgccgaac
     3121 tcagcgcatg cgcgatctgt tccgccgtca acgaaaacgc cgtccccact gccgacgccg
     3181 ccagcgcgtt gctcaaattg tgacgaccac tcatcgcgag tgacgcctgc gcgtctccca
     3241 aaggcgtccg caaacgaaag ttgatccgtc cgagcgtctg cgcatcgatc tcacttgcgg
     3301 aaacgt
//
LOCUS       DASWTX010000119         2762 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_370079, whole genome shotgun sequence.
ACCESSION   DASWTX010000119 DASWTX010000000
VERSION     DASWTX010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2762)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2762)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2762
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370079"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..624
                     /locus_tag="VGD38_01870"
     CDS             <1..624
                     /locus_tag="VGD38_01870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726785.1"
                     /translation="RTLLGVEKVWFGLDRTHRRLLDESTRREWESLLHDLRAYRSAFA
                     SDHRHAFYRSAAEAWLESLLRRDITKLDPGLIIAPLHAQFRTARGGKLGIRPIDLLAL
                     RQDGRLVVIELKVYEDREHVLQGADYWRRVEAHRRRGHIARAKLFGDLQIRDEPPLVY
                     LVAPTLRVHPSFKTLARCIASDIEIYRFDINEDWRAGVRVMHRMRVN"
     gene            complement(621..1814)
                     /locus_tag="VGD38_01875"
     CDS             complement(621..1814)
                     /locus_tag="VGD38_01875"
                     /inference="COORDINATES: protein motif:HMM:TIGR01420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HEY0726786.1"
                     /translation="MAVKIDDLLRIATGHGASDLHLKVGAFPVMRIGGELHPIADAPR
                     LKPEDTLDMAFSIMSNRQKQRFKEVSEVDIGYGVSGLGRFRANIFQQRGTVSIVLRVI
                     PDSNKSVAQLGLPPVIEKIAEERRGLILVTGATGSGKSTTLAAMIDCINSTRSGHIVT
                     IEDPIECLHRDKHAFITQREVDVDTRSFAEALRGALRQDPDVILVGEMRDHETIETAL
                     TAAETGHLVLSTLHTLDATETITRIVSSFPSHQQKTVRLQLAGILKAVISMRLVRAAK
                     GAGRVPAIEVLVSTAFIRDHIINEEKTYMIREAIAAGTSQYGMQTFDQSLFHLLQSRL
                     ITLEEALHNASNPDEFKMRVQGIYSADDTLAHMTTPAITPPPAVTKAAPPTIKTEPES
                     IFVKH"
     gene            complement(2056..>2762)
                     /locus_tag="VGD38_01880"
     CDS             complement(2056..>2762)
                     /locus_tag="VGD38_01880"
                     /inference="COORDINATES: protein motif:HMM:NF024098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="HEY0726787.1"
                     /translation="TGDHSLENEDKDFPVFALVMMVFDLDQYRNTHVPMVNRLKFDYF
                     GHECVIIHSRDIRKAQKDFGFLTDALKRREFYGRINEIMSAPGYDIIAAVIKKQEYKA
                     KYGSSAPNPYDLALKFAMERLLNLLEREGQTEVYLIAEARGKREDNELLLSFLHILAY
                     GTDGILAERFAKINFHLRFKPKVMNVVGTQLADLAAYPIARYIINPAVSTPAYEIVKK
                     RYYVGSGRMHGLKVFP"
BASE COUNT          589 a          768 c          766 g          639 t
ORIGIN      
        1 cgcacgttgc tcggcgtcga aaaagtctgg ttcggattag acaggacaca ccggcgtctg
       61 ctcgatgaat caacgcggcg cgagtgggaa agcctgcttc acgatctgcg cgcgtatcgc
      121 tcagcgttcg cgagcgatca ccgtcacgcg ttctatcgtt ctgcggccga agcgtggctc
      181 gaatcgctgc tgcgccgcga catcaccaaa ctcgatcccg gcctgatcat cgcgccgttg
      241 cacgcgcagt ttcgcaccgc acgcggcggc aaactcggca tccgtccaat agatctcctc
      301 gccttgcgac aagatggcag actcgtcgtg atcgagttga aggtctacga agatcgcgag
      361 cacgtcctgc agggcgcaga ttactggcgc cgtgtcgaag cgcatcgccg ccgcggacac
      421 atcgcgcgcg caaagctctt cggcgatctg cagattcgag acgaaccacc gttggtctat
      481 ctcgtcgcgc cgacgctgcg agtccatccc tcattcaaaa ctctcgcacg ctgcatcgcg
      541 agcgacatcg agatctatcg cttcgacatc aacgaagact ggcgcgcagg cgtgcgcgtc
      601 atgcaccgca tgcgtgtgaa ttagtgtttg acgaagatgc tttcgggttc ggttttgatt
      661 gtcggcggcg cggctttggt gaccgcgggc ggtggcgtta tcgcgggcgt cgtcatgtga
      721 gcaagcgtgt cgtcggcgga gtagattccc tgcacgcgca tcttgaactc atcaggattg
      781 ctcgcgttgt gcagcgcttc ttcgagcgta atgagccgcg actgaagcag atgaaacagc
      841 gattgatcga acgtctgcat gccgtactgc gacgtgcccg cagcgatcgc ttcgcgaatc
      901 atgtacgtct tctcttcgtt gatgatgtga tcgcgaatga acgccgtcga gaccaacact
      961 tcaatcgccg gaacgcggcc cgcgcctttt gccgcgcgga cgagccgcat cgagatcacg
     1021 gctttaagaa ttcccgccaa ctgaagccgg accgtctttt gctggtgcga cggaaacgac
     1081 gaaacgatac gcgtgatcgt ttcagtcgcg tcgagtgtgt gcagagtcga gagcacgagg
     1141 tggcccgtct cggccgccgt cagtgcggtt tcaatcgttt cgtggtcgcg catttcgccg
     1201 acgagaatca cgtccggatc ctggcgcagc gcgccgcgca acgcttcggc gaaagagcgc
     1261 gtatcgacgt caacctcgcg ttgcgtaatg aacgcatgtt tgtctcgatg caaacactcg
     1321 atcgggtctt caatcgtgac gatatgaccg ctgcgggttg agttgatgca gtcgatcatg
     1381 gcggcgagtg tcgtcgactt tcccgagccg gttgcgccag tgacaagaat caacccgcgc
     1441 cgttcttcgg caatcttttc gatcaccggc ggcaggccga gttgggccac ggacttgttg
     1501 ctgtcgggaa tgacgcgcag cacgatgctg acggtgccgc gttgctgaaa gatgttggcg
     1561 cggaagcggc ccaaacccga gacgccatag ccgatatcga cttccgagac ctctttaaag
     1621 cgctgctttt gccggttgga catgatcgaa aaagccatat ccaacgtgtc ttccggcttc
     1681 agccgcggcg cgtcggcaat cggatggagt tcacctccga tgcgcataac cgggaacgct
     1741 ccgaccttca aatgcagatc ggacgcgccg tgaccggtag caatacgtaa cagatcgtca
     1801 atcttaacgg ccattgaata tcctgagaac cttttggact gctaaaaggc tggggttatg
     1861 gaagctttgc gctggtagga ggagcgccgc gctttactat agcgtggcgc tctttgggcc
     1921 gtcaataaat aatcccaccc acccccgcat tgacatcaac ggattgaaaa tctaagatgg
     1981 cgaacgaatt cggactgggg gttcccggtt ggcagatggc tctggtgaat accggggcct
     2041 tttgtttcag tagcgttacg gaaacacttt cagtccatgc atcctacctg agccgacgta
     2101 atacctcttc tttacaatct cgtatgctgg tgttgatact gccgggttga tgatgtatct
     2161 ggctatcgga tacgccgcca ggtcggccaa ctgagtacca actacattca taacctttgg
     2221 tttgaaacgc aagtggaagt ttatctttgc gaatcgctca gcgaggatgc cgtcggtgcc
     2281 gtaggccaaa atatggagga aactaagtaa caactcatta tcctcacgct taccacgagc
     2341 ctctgcgatc aaataaactt ctgtttggcc ctcacgttcc aagaggttta atagtcgttc
     2401 catcgcgaac ttcagggcaa gatcgtaagg gtttggagcg ctgctgccat attttgcctt
     2461 atattcctgc ttcttaatta cggctgcgat gatgtcgtag cccggtgcgg acatgatctc
     2521 gttgattctg ccgtagaact ctcgccgctt gagagcatct gtgagaaatc caaaatcctt
     2581 ttgcgccttg cgaatatcac gcgagtgaat aatcacgcac tcgtgtccga agtaatcgaa
     2641 cttcaaccga tttaccatcg gtacgtgagt gtttctatac tggtccaaat caaacaccat
     2701 catcacgaga gcaaagacag gaaagtcttt atcctcgttt tcaagtgaat gatcacccgt
     2761 tt
//
LOCUS       DASWTX010000120         1875 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_66747, whole genome shotgun sequence.
ACCESSION   DASWTX010000120 DASWTX010000000
VERSION     DASWTX010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1875)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1875)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1875
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66747"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1257
                     /locus_tag="VGD38_01885"
     CDS             <1..1257
                     /locus_tag="VGD38_01885"
                     /inference="COORDINATES: protein motif:HMM:NF024874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY0726788.1"
                     /translation="EVTGLSLEPLYAKVPDCLRGYVELVYDLSNRPSIRFIEGLLYRS
                     RYYDTSSQSISLSEVNNDDRPFVLSSPQLQDDAHLHLSTPFNNPALDGLFKMRTEPQP
                     LGYATELLGVSAGDAERFNRFFTTEAPPPAQRYTGEGVRIRYFGHACVLFETRNVSIL
                     TDPVVSYAYPGSSERYSLADLPDVIDYVVITHNHQDHCMFETLLQLRHKIKHIIVPKN
                     SGDGLLDPSLKLVLRTIGFKNVSEIDEMESVEVPGGAITGLPFLGEHADFNIRTKIAY
                     LIKLEGKSVLCVADSNNIEPQLYEHIQQLTGNVDILFIGMECEGAPLSWLYGPLLTKP
                     LARKLDQSRRLDGSDCRKGMTLIDCLKPSQVYVYAMGQEPWLTYLTSIQYTEQSKPIV
                     ESNMLVAACRERNVVAERLFGCREIF"
     gene            1310..>1875
                     /locus_tag="VGD38_01890"
     CDS             1310..>1875
                     /locus_tag="VGD38_01890"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY0726789.1"
                     /translation="MTTQNSEMPMRTLGRTGVQVSLVGLGGWHLGFDYLDEELSIRII
                     RTAIDNGINFMDNCWDYNEGASEIRMGKALRDGYRDRVFLMTKIDGRTKQDAAKQLDE
                     SLKRMQVDHIDLVQHHEILRYEDPHRIFGDEGANAALIEARDAGKIRYIGFTGHKDPR
                     IHLYMLEVAREHGFEFDAVQMPLNVMDA"
BASE COUNT          437 a          530 c          528 g          380 t
ORIGIN      
        1 gaggtcaccg gcctctcgct cgaaccgctt tacgcaaaag ttcctgactg cctgagggga
       61 tatgtcgagc tggtttacga cttgagcaat cgcccgtcga tcagattcat cgagggtttg
      121 ctttacagga gccgttacta cgatacgtct tcgcagagca tctcgttgtc tgaagtcaac
      181 aacgacgacc ggccgttcgt gctcagttcg ccgcaactac aggacgacgc tcatctgcac
      241 ttgagcacgc ccttcaacaa cccggcgctg gacgggctct tcaagatgag aacagagcca
      301 caaccgctcg gctacgccac ggaactgttg ggcgttagcg ccggtgacgc cgagaggttc
      361 aatcgattct tcaccactga agcgccgccg ccggcgcagc ggtacaccgg cgaaggagtt
      421 cgcattcggt atttcggtca cgcttgcgtg ctcttcgaaa caagaaacgt cagcattttg
      481 acagaccctg tcgtcagcta tgcgtatcca ggcagcagcg agcgctacag cctcgcggat
      541 ctacccgacg tgatcgacta cgtggtgatc acgcacaacc accaggacca ctgcatgttt
      601 gagacgctgc tgcaactgcg tcacaagatc aaacacatca tcgtgccgaa gaacagcggc
      661 gacggcttgc tcgatccttc actaaaactc gtgttgcgca cgatcggttt caagaacgtt
      721 tccgagatcg acgaaatgga atcagtcgag gtgccgggcg gcgcgatcac cggcctgcct
      781 ttccttggcg aacatgccga cttcaacatc cggaccaaga tcgcatacct gatcaagctc
      841 gaaggaaaat ccgtgctctg tgtcgcggat tcgaacaaca tcgagccgca gttgtacgaa
      901 cacattcaac agctaaccgg caacgtggac atcctgttta tcggcatgga gtgtgaagga
      961 gcgccgctgt cgtggctcta tggaccacta ctgacaaaac ctttagcgcg caagttggac
     1021 cagtcgcgcc ggctcgacgg ctctgattgc cgcaagggaa tgacgctgat cgactgtctg
     1081 aaaccaagcc aggtttatgt ctacgcgatg ggccaggaac cgtggctcac ttacctcacg
     1141 tcgatccagt acacggaaca gtcgaaaccc atagtcgagt caaacatgct ggtcgcagcg
     1201 tgccgtgagc gcaatgttgt cgccgaacgt ctcttcggct gtcgagagat tttttaaacg
     1261 agtccgggcg tgtgcgcgcg tcgttcaagt cgtttaggct gatggcacaa tgacaacaca
     1321 gaattctgaa atgccgatgc ggacgctcgg ccggacaggg gtacaagtct ctttagtcgg
     1381 gctcggaggt tggcacctcg ggtttgacta cctcgacgag gagttgagca ttcggatcat
     1441 tcgcaccgcg atcgataacg gcatcaactt catggacaac tgttgggact acaacgaagg
     1501 cgcgagtgag atccgcatgg gaaaagcgct gcgcgacggc taccgcgatc gcgttttcct
     1561 gatgacgaag atcgacggcc gcacgaagca ggacgccgcg aagcagttgg atgaatcgct
     1621 caagcgcatg caggtcgatc acatcgactt agtgcaacat cacgagattc tgcgttacga
     1681 agatccgcat cgtatcttcg gcgacgaggg cgccaacgcg gcgctgatcg aagcacgcga
     1741 tgcgggaaag attcgttaca tcggtttcac cggacacaaa gatccgcgca ttcacctgta
     1801 catgctcgaa gtggcgaggg aacacgggtt tgagttcgac gccgtgcaga tgccgctcaa
     1861 cgtgatggac gcgca
//
LOCUS       DASWTX010000121         1743 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_1112, whole genome shotgun sequence.
ACCESSION   DASWTX010000121 DASWTX010000000
VERSION     DASWTX010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1743)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1743)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1743
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1112"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1297
                     /locus_tag="VGD38_01895"
     CDS             <1..1297
                     /locus_tag="VGD38_01895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726790.1"
                     /translation="STAMTVDPYERDNSDGLQRIAEKAIRSSVVIYSVDTQGLQYTGL
                     TAADSPRGIRPIGPQVNSLLSQRSRLLYERRAGGELISRQTGGFQIRNSNDFQLDRIL
                     EDQRGYYLIGYRPTEETFNREFHQIKAKVKRSGMTLRTRAGFYGITEEDANRARLTAT
                     DETNLALTSPFEAPDLELDLTSFFANGKTEGSIVRSFINLKAADLTFMPVNGRRETSL
                     EIHGIIFGNNGTIVEQVKQGAVLSLRESEYDQALREGVRLRFDMPGKKPGSYQVRVAV
                     RDRTSSKIGSAGQFVAVPNLNNKKVALSGIVIRNEGEPVTQSPAMANPFGRRFALNTD
                     LHFAFLIYNATIDQATRLPNLTMETKLFRDGKSVKDAQTSIDVKNQADLSRLFINSAI
                     RLSGDLEPGDYYLQVVITDKAARDKQPSITQWVDFQIVK"
     gene            1323..>1743
                     /locus_tag="VGD38_01900"
     CDS             1323..>1743
                     /locus_tag="VGD38_01900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726791.1"
                     /translation="MKHRISLALLLSFSTFLSAVPLAAQTTPAGEQDDVVRITTNLVQ
                     VDAVVTKDGKPVRDLKAEDFEIYQDGKKQTITTFAYISNVPSSSPTTSTPPPKPEKGG
                     AGVPPAAPIERDVSRRTVAIVVDDLGLSAESMHHVRRQ"
BASE COUNT          440 a          497 c          454 g          352 t
ORIGIN      
        1 gtctaccgca atgaccgtcg atccttacga aagggacaac agcgacgggt tgcagcggat
       61 cgccgagaaa gcgattcgct cttcggtagt catctattcg gtcgacacgc aaggcttgca
      121 atataccgga ctcaccgccg ccgactcgcc caggggcatt cgaccgattg gaccacaggt
      181 aaattcgttg ctgtcacaac gttctcgact gctatatgag cgccgggcgg gaggtgaact
      241 gatctccagg caaacaggtg gtttccagat ccgcaactca aatgattttc aactcgatcg
      301 catcctcgaa gatcagcgtg gttattacct cattgggtac cggcccactg aagaaacttt
      361 caaccgcgaa ttccatcaaa tcaaagcgaa agtaaaacgc tcgggaatga ctttgcgaac
      421 gcgcgccggt ttctatggca tcaccgaaga agacgcgaac cgcgcgcgcc ttaccgcaac
      481 agacgaaacc aatctggcgc tgacctctcc gtttgaagcg ccggacctcg aactcgatct
      541 aacgtcgttc tttgcaaacg gaaaaactga aggttcgatc gttcgctcat tcatcaatct
      601 caaagccgcg gatctcacgt tcatgcctgt caacggccgg cgcgaaacgt cactcgagat
      661 tcacggtata atctttggca acaacggcac gatcgtcgag caagtcaaac agggcgctgt
      721 cctgagtttg cgtgagagcg aatacgatca ggcgttgcgt gaaggtgtgc gtctgagatt
      781 cgacatgccg gggaagaagc cgggttcgta tcaggtgcgt gttgcagtgc gcgaccgaac
      841 gtcgtcgaag atcgggtcgg ccggacagtt tgtggctgtt ccgaatctaa acaacaagaa
      901 agtagcgctg tcgggcatcg tcatacgcaa cgaaggcgaa ccggttacac aatcgcctgc
      961 gatggcaaat ccgtttggca gacgcttcgc actcaacaca gatctccact tcgcgttcct
     1021 gatttacaac gccacgatcg atcaggcaac tcgtttaccg aacctgacga tggagaccaa
     1081 actttttcgc gacggcaaga gtgtcaaaga cgcacagacc tcgattgacg tcaagaacca
     1141 ggcggacctg tcgcgtctct ttatcaacag cgcgattcgc ttgagcgggg atctcgaacc
     1201 gggcgactac tatcttcagg tcgtgattac cgataaagca gcacgagaca agcagccctc
     1261 aatcacacaa tgggtagact tccagattgt gaagtgaata cgaaagttta ggagattacc
     1321 cgatgaaaca cagaatcagc ctcgcactgt tattgtcgtt ctctacattt ctgtccgccg
     1381 tcccactcgc ggcccagacg actcctgccg gggaacaaga cgacgtagtc agaatcacca
     1441 ccaacctcgt ccaggtcgat gccgtcgtca cgaaagacgg taaacccgtc cgcgatctga
     1501 aggctgaaga tttcgagatc taccaggacg gaaaaaaaca gaccatcacc accttcgctt
     1561 acatttcgaa tgttccgagt tcgagtccga caacgtctac accgccgccc aagccggaga
     1621 aaggcggagc cggtgttcct ccagccgctc cgatagaacg cgacgtctcg agacgcacgg
     1681 tcgcgatcgt ggttgacgac ctcggcttgt cggccgagag catgcaccac gttcgccggc
     1741 agg
//
LOCUS       DASWTX010000122         1819 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_66774, whole genome shotgun sequence.
ACCESSION   DASWTX010000122 DASWTX010000000
VERSION     DASWTX010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1819
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66774"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..319)
                     /gene="secY"
                     /locus_tag="VGD38_01905"
     CDS             complement(<1..319)
                     /gene="secY"
                     /locus_tag="VGD38_01905"
                     /inference="COORDINATES: protein motif:HMM:NF012564.4"
                     /note="forms heterotrimeric complex in the membrane; in
                     bacteria the complex consists of SecY which forms the
                     channel pore and SecE and SecG; the SecG subunit is not
                     essential; in bacteria translocation is driven via the
                     SecA ATPase; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEY0726792.1"
                     /translation="MPDLRRRIFFTLGLLAVYRFGAHVTAPGINKLRLEEVWRDVQGT
                     LLGVLDLFSGGNFRTISVFALGVTPYITASIILQLMTVVSPQLKKLQEEGEMGRQKIN
                     QWTR"
     gene            complement(367..834)
                     /gene="rplO"
                     /locus_tag="VGD38_01910"
     CDS             complement(367..834)
                     /gene="rplO"
                     /locus_tag="VGD38_01910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEY0726793.1"
                     /translation="MSLNTLKPAKGSTHKKKRVGRGPGSGLGKTAGRGEKGQKSRSGY
                     SRKIGFEGGQMPLHRRLPKRGFTNIFKKRWLEVSLAALEQHFNADEEITPEVLHDRGL
                     IKKAKHDVVVLGNGEVSKPLRVSAHRFTKSAREKIEKAGGAVVEIAAPVKAEG"
     gene            complement(848..1054)
                     /gene="rpmD"
                     /locus_tag="VGD38_01915"
     CDS             complement(848..1054)
                     /gene="rpmD"
                     /locus_tag="VGD38_01915"
                     /inference="COORDINATES: protein motif:HMM:TIGR01308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HEY0726794.1"
                     /translation="MPRRAQTQTDNGKIRIQYYRSFIASPKTHKTIVRSLGLTKLNQI
                     VERPDTDAMRGAVAKVPHLLRIVE"
     gene            complement(1057..1563)
                     /gene="rpsE"
                     /locus_tag="VGD38_01920"
     CDS             complement(1057..1563)
                     /gene="rpsE"
                     /locus_tag="VGD38_01920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004074875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEY0726795.1"
                     /translation="MRQPKQRIPAQGLDLKDQFISINRVTKVVKGGKNLSFAALVVVG
                     DEGGHVGFGTGKAREVPLAIKKGIESAKKNLIRVPLINNTLPHQLIGEYGAGRVLVKP
                     ASEGTGVIAGGAVRAVMQAVGVRDVRTKVLGSTNPHNVVRATFDALLRMKDPMELARL
                     RGKQVEEM"
     gene            complement(1672..1819)
                     /locus_tag="VGD38_01925"
                     /pseudo
     CDS             complement(1672..1819)
                     /locus_tag="VGD38_01925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970258.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="50S ribosomal protein L18"
BASE COUNT          337 a          586 c          476 g          420 t
ORIGIN      
        1 agcgcgtcca ctggttgatc ttctgccggc ccatctcgcc ttcttcctgc aacttcttga
       61 gttgcggcga gacgacagtc atgagctgga gaatgatgga cgcggtaatg tagggcgtca
      121 caccgagggc aaaaaccgaa atcgtacgga agtttccacc ggagaagaga tcgagcacgc
      181 cgagaagggt tccctggacg tcgcgccaga cttcttccag ccgaagctta ttgattcccg
      241 gcgcggtgac gtgtgcgcca aaccgataga ccgcgagcag gcccaacgta aagaaaatgc
      301 gccggcgtag gtccggcaca ttgaacatat tgcgaacagc ggctagaaac ttctccataa
      361 aaccccttag ccctcggctt taactggagc tgcgatctcc actacagcac caccagcctt
      421 ctcgatcttt tcgcgagcgc tcttcgtgaa ccggtgcgcc gaaacacgaa gcggcttgga
      481 aacctcaccg tttccgagca ctaccacatc atgtttcgcc ttcttgatca agccccggtc
      541 gtgcaaaacc tcgggcgtga tctcttcgtc ggcattgaaa tgctgttcga gcgccgcgag
      601 actgacctcg agccagcgct tcttgaagat gttggtgaag ccgcgtttcg gcagacggcg
      661 atgcagcggc atctggccgc cttcgaatcc gatcttgcgc gaatagccgg agcgggactt
      721 ctgtcccttc tcaccgcgcc ccgcggtctt gcccagtccg gagcctggtc cacgcccgac
      781 gcgtttcttc ttgtgggtcg atcccttggc gggcttgagc gtattaagac tgatagccat
      841 tatttttcta ctccactatg cgcagcaagt gcggcacctt cgctaccgcg ccgcgcatcg
      901 cgtccgtgtc cggccgctcg acgatctggt tcaacttcgt caggcccagg ctacgcacga
      961 ttgttttatg cgttttcgga gatgcgataa aactccggta gtactggata cgaatctttc
     1021 cgttgtcagt ttgcgtctgt gctctccgcg gcatgcttac atctcctcga cttgtttacc
     1081 acgcaagcgc gccagttcca tcggatcctt catccgcagc aacgcgtcga acgtcgcccg
     1141 cacgacgttg tgcggattcg tcgaacccag caccttcgtg cgcacgtccc tgacacccac
     1201 tgcctgcatc accgcacgca ccgcgccgcc ggcgatcacg cccgttcctt ccgacgccgg
     1261 tttcaccaac acgcggcccg cgccgtactc accgatcaac tggtgcggca acgtgttatt
     1321 gatcaacggc acgcgaatca aattcttctt cgccgactcg atgcccttct tgatcgcgag
     1381 cggaacttct cgcgccttgc ccgtgccgaa accgacgtgt ccaccttcat cgccgaccac
     1441 gaccagcgcc gcgaacgaaa ggttcttgcc gcctttaacg accttggtca cacgattgat
     1501 ggagatgaac tgatctttca ggtcgagccc ctgcgcggga atgcgttgct tgggttgtct
     1561 catattctat tctttgctct tcttgcgtga cttcttctct tctttgggtt ccgctacggc
     1621 ctcttccgcc ggctcgccgc cgtcgggttc cgctttcaac tcgtgcttgt tcaatccggc
     1681 agcacgcgcg gcatcggtca aagccttgat gcggccgtga tagagataac cgccgcgatc
     1741 gaaaacgacc tgctcgatac ctttcgcgat tgcgcgctcg gcgattgcct gaccaatacg
     1801 tcgtgcggcg tcgaggtta
//
LOCUS       DASWTX010000123         3367 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_87828, whole genome shotgun sequence.
ACCESSION   DASWTX010000123 DASWTX010000000
VERSION     DASWTX010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3367)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3367)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3367
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87828"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(42..1076)
                     /locus_tag="VGD38_01930"
     CDS             complement(42..1076)
                     /locus_tag="VGD38_01930"
                     /EC_number="5.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF008277.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016857 - racemase and epimerase activity,
                     acting on carbohydrates and derivatives [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldose epimerase family protein"
                     /protein_id="HEY0726796.1"
                     /translation="MNVNISKRQFGTTDGHDVSLYTLTNERGCEVSITNYGGALVSLK
                     TPDRRGNLADVALGFETLEEYVGNPRYFGGLIGRHANRIGSGRFTLDGVQYQLTQNNG
                     VNHLHGGAKGFDKRVWTAREETSSGAAKLHLEYFSVDGEEGYPGNVIANVSYKLSADN
                     ELEIDYEATTDRDTLVNLTSHAYFNLAGGGDILGHELTLHADGFTPVSKELIPTGEVK
                     AVENTPMDFRRAKPIGADLSLAGGYDHNFVLQNSDGSLRPAARLYEPNSGRVLEILTT
                     EPGIQFYSGNFLDGSLTGKGGVVYHKYTGLCLEPQKFPDAPNHANFPSTVLRPGEVYK
                     HVSVYRFLCD"
     gene            complement(1073..1828)
                     /locus_tag="VGD38_01935"
     CDS             complement(1073..1828)
                     /locus_tag="VGD38_01935"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEY0726797.1"
                     /translation="MKLIILAAGYATRLYPLTLNQPKPLLPVAGKPMLEHVLDHVASD
                     RDIDHAYVVTNAKFVSHFENWARSYTRPNLHFGFTIVNDGSTDDSNKLGAIGDLHLVL
                     TKEKIDDDILVIGGDNLFSNDLDEFSDYCKQVNAPVTGVYDVGDLEAIKKYNAIEIDE
                     DKRITYFEEKPKEPRSTLTGIALYYYPKVTLALIHQYIAEGNNPDQPGRLVQWMYPRV
                     PFYVWKVPGLWYDVGSIETLEEANRVFGELRRE"
     gene            complement(1828..2952)
                     /locus_tag="VGD38_01940"
     CDS             complement(1828..2952)
                     /locus_tag="VGD38_01940"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004335 - galactokinase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046835 - carbohydrate phosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HEY0726798.1"
                     /translation="MSQTLINNSPRVFRAPGRVNLIGEHTDYNDGFVMPAAIDLSVFV
                     RVWPREDRKLEIRSENFDDTIEFDLDDPNPEPRKHWSDYAVGVAVMLERAGHHLRGAH
                     LHLRGEVPVGSGLSSSAAVEVATATALVANSDVTIDPRELALLCQKAENEFVGARVGI
                     MDQFTSLFGQAQRALLLDCRSLEFELLPLPDTVKLVICNTMVKHELASSAYNERRAQC
                     EEGVRHLAQFLPNVTALRDVTMEQFEQFGRDLPEVVYRRCRHVITENARVLAAAEALD
                     QHDLQRFGGLMAESHRSLRDDYEVSIRELDLMVDLARQVEGVYGARMTGGGFGGSTVN
                     LVDVERVEEFKQSVPKEYEQITALKPEIYVCEPANGAEEI"
     gene            complement(2930..>3367)
                     /locus_tag="VGD38_01945"
     CDS             complement(2930..>3367)
                     /locus_tag="VGD38_01945"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY0726799.1"
                     /translation="AVGPAKLWQPEGGKRDAKFDEVDVAAARNDLLEEDRAYLQASLK
                     DGLVKAFNSYASPESRLYRNGSLPFPDRNASAAALASTKGQVSWSPIAADVARSGDLG
                     YTHGTYEITDETKKVTERGSYVRIWRGFGDHWRIVLDVTNPHQ"
BASE COUNT          746 a         1058 c          836 g          727 t
ORIGIN      
        1 gttgtgatcg acgacaacgc agatgacaca agcaaggagg attagtcgca taggaaacgg
       61 taaaccgaaa cgtgcttata aacttcgccc ggccgcagca cggtgctcgg aaagtttgcg
      121 tgattcggcg cgtcgggaaa cttctgcggc tccaggcaca gaccggtgta cttgtgatag
      181 accacgccgc ccttccctgt cagactgccg tcgagaaagt ttcctgagta gaactgaata
      241 cccggctcgg tcgtgagtat ttcgagcacg cgcccggagt tcggctcata caaccgcgcc
      301 gcgggccgca gcgatccatc ggaattttga agcacaaagt tgtgatcgta accgcccgcc
      361 aaactcagat ccgcaccgat cggcttggcg cgtctaaaat ccatgggcgt gttctcaacc
      421 gccttaacct cacccgtggg gatcaattcc ttcgacaccg gcgtaaaacc atcggcgtgc
      481 aacgtcaact catggcccaa aatatcgccg ccgccggcga gattgaaata tgcgtggctc
      541 gtgaggttta cgagcgtgtc gcgatcggtg gtcgcttcgt aatcgatctc gagctcgttg
      601 tcagcagaca atttgtaact cacattcgct ataacgttcc cgggataacc ctcttcaccg
      661 tcaacgctga agtactcaag gtgcaacttc gcggcgccag aagaggtttc ctccctcgcg
      721 gtccacactc gtttatcaaa ccccttcgcg ccaccgtgca ggtgattcac gccgttgttc
      781 tgcgtgagct gatactgcac gccatcaagc gtgaaccggc ccgatccgat gcggttcgcg
      841 tgtcgcccaa tcaacccgcc aaagtaacgc ggattcccga catactcttc cagcgtctca
      901 aaccccaacg ccacatccgc gagatttcca cgccgatcag gcgtcttcaa cgaaaccagc
      961 gcgccaccat aattggtgat cgacacctcg catccgcgtt cattcgtcaa cgtgtaaaga
     1021 ctgacgtcgt gaccatccgt ggtcccaaac tgtcgcttgc ttatattcac gttcattcgc
     1081 ggcgcaactc gccgaacacg cgattcgcct cttccagagt ctcaatcgaa ccgacgtcgt
     1141 accatagccc cggcaccttc caaacataaa acggcacgcg cgggtacatc cattggacca
     1201 ggcggcccgg ttggtctgga ttatttccct cggcaatgta ctggtgaatc agcgccagcg
     1261 tgaccttcgg ataataataa agcgcgatcc cggtcaacgt gctcctgggc tctttcggct
     1321 tctcttcgaa gtaagtgatg cgcttatctt cgtcgatctc gatcgcgttg tatttcttga
     1381 tcgcttcgag atcgccaacg tcgtaaacgc ccgtcaccgg cgcgttcacc tgtttgcagt
     1441 aatcactaaa ctcgtcgagg tcgttactga acaggttgtc gccgccgatc acgagtatgt
     1501 catcgtcaat cttctccttc gtgagcacga gatgcagatc gccgatcgca ccgagcttat
     1561 ttgaatcatc agtgctgccg tcgttgacaa tcgtgaatcc aaaatgaaga ttgggacgcg
     1621 tgtaagacct ggcccagttt tcaaagtgac tcacaaactt cgcgttcgtc accacgtaag
     1681 cgtgatcgat gtcgcgatcg ctcgcgacgt ggtccaacac gtgttcgagc atcggtttgc
     1741 ccgcaaccgg caacagcggt ttgggctgat tgagtgtcaa tggataaaga cgcgtggcgt
     1801 acccggccgc cagtatgatc agtttcatca gatttcttcc gccccattcg caggctcaca
     1861 aacgtagatc tcaggcttca atgcggtaat ttgctcgtat tccttcggca cactttgctt
     1921 gaactcttcg acgcgctcga cgtcaaccag attcacggtc gagccgccga agccgccacc
     1981 cgtcatgcgc gcgccgtaaa ctccttcaac ctgccgcgcg aggtcaacca tcaaatccag
     2041 ttccctgata ctaacttcgt aatcgtcgcg caggctgcgg tgcgactcag ccatcaaccc
     2101 gccaaaccgc tgtaaatcgt gctggtccaa cgcttcagcc gctgccaaaa cacgtgcatt
     2161 ttccgtgatc acgtgccggc aacgccgata aaccacttcg ggaagatcgc gcccaaactg
     2221 ctcgaactgt tccatcgtca cgtcgcgaag cgccgtcacg tttggcaaaa actgcgcgag
     2281 atgccgcacg ccttcctcgc actgcgcacg ccgttcattg taagcgctcg acgccagctc
     2341 atgtttcacc atcgtgttgc aaataaccag tttcactgtg tcaggcaacg gcaacaactc
     2401 gaattcaagc gaacggcaat ccagcagcaa cgctcgctga gcctggccaa atagcgacgt
     2461 gaactggtcc atgatcccaa ctcgcgcgcc cacaaattcg ttttctgctt tttgacacag
     2521 caaggcgagc tcgcgcggat cgatcgtcac atccgaattg gctaccaaag cggtcgcggt
     2581 cgcgacttcc accgccgccg aagagctcaa acccgaacca accggaacct caccacgcag
     2641 atgcaagtgc gcgccacgca gatgatggcc tgcgcgttcg agcatcaccg cgacgccaac
     2701 ggcgtaatca ctccagtgtt tgcgcggctc aggattcgga tcatcaagat caaactcgat
     2761 cgtgtcgtcg aagttctcgg atcgaatctc gagcttgcga tcttcacgcg gccacacacg
     2821 cacgaacaca gacaagtcga tcgcagccgg catcacgaag ccgtcgttgt agtcggtgtg
     2881 ttccccgatt agattgaccc gccccggcgc gcgaaaaacc cgcggagaat tattgatgag
     2941 ggtttgtgac atccaacact atccgccaat gatccccgaa gccccgccat atcctgacgt
     3001 agctgccgcg ttccgttacc ttctttgttt cgtcggtgat ttcataagtg ccatgcgtgt
     3061 agccgagatc gcccgagcga gcaacatccg cagcgatcgg actccagctc acttgtccct
     3121 tcgttgacgc caacgcggcg gcggaggcgt tgcgatcggg aaagggcaag ctgccgtttc
     3181 gataaagcct cgactcaggc gaagcgtaag agttgaaagc cttgaccaat ccgtccttca
     3241 aactcgcctg caagtaggcg cgatcttcct cgagcagatc gttgcgcgca gcggcaacgt
     3301 caacctcgtc aaacttcgca tccctcttcc cgccttccgg ttgccacagc ttcgctggac
     3361 caaccgc
//
LOCUS       DASWTX010000124         1825 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_152997, whole genome shotgun sequence.
ACCESSION   DASWTX010000124 DASWTX010000000
VERSION     DASWTX010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1825
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152997"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            129..578
                     /locus_tag="VGD38_01950"
     CDS             129..578
                     /locus_tag="VGD38_01950"
                     /inference="COORDINATES: protein motif:HMM:TIGR00004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019239 - deaminase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rid family detoxifying hydrolase"
                     /protein_id="HEY0726800.1"
                     /translation="MKRLVLLLVAFVCLVSYSASYVEAQSAKRKAVNTGQPNGLFSSA
                     IVTGNLVYTSGQIGIDSKTGQMPEGMEAQLEQVFRNLPAGLEASGSGIDHVVKATVFL
                     ADMNDYNKMNELYRAKFKGDPPARSTVQVARLPRDARIEIEVVAVLK"
     gene            complement(571..1401)
                     /locus_tag="VGD38_01955"
     CDS             complement(571..1401)
                     /locus_tag="VGD38_01955"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY0726801.1"
                     /translation="MPKVQANGITLNYEQQGDGEPLILIPFLSADNACYAFQVAEYSK
                     HFTCISVDLRGAGESDKPDGPYSTELYADDVAAFMQALGIARAHVTGLSLGAAIGMWL
                     AAKHPDKVKSLSLHSGWHKTDPYIKTVLEDWQVAAKAIGSVPEMVIRTMFPWCFTPQL
                     YATRYDYIQSLADFTRSRPALSVDGYITQANAVISHDVESRLAEITAPTQVTFGRHDQ
                     ITSLRFAEPLTSSIRNSELVGFEEASHAPIYESVEEFNQKTLDFLQRHSVAEKASGAI
                     "
     gene            complement(1437..>1825)
                     /locus_tag="VGD38_01960"
     CDS             complement(1437..>1825)
                     /locus_tag="VGD38_01960"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY0726802.1"
                     /translation="EVLSVNLGERKIAWHYEHPQRKFPFYSSAAVTSSRVVLGGRDKL
                     VHGLTLQGKAAWTFTTRARVESSPAIAGDRVFVGSNDGRFYVLNLTSGAKLWEFEAGA
                     PLSASPAIANGRIVIGSQDGRLYCFG"
BASE COUNT          377 a          497 c          541 g          410 t
ORIGIN      
        1 gctgtctttg ggttcatgcc ggtcgtcccg atggtgctcg gctcggcctt gttgatgtgg
       61 gtggtttcac tggccacacg aaagccggcg ccgagtacgc tggcgcgata ttttggaggt
      121 gagaaccaat gaagagatta gtgctgctac ttgttgcgtt cgtttgcctg gttagttact
      181 cagctagtta tgtcgaggcg caaagcgcga aacgtaaagc ggtcaacacc ggccagccta
      241 atggcctttt ctcctccgcg attgtcaccg gtaatctcgt ttacacgtca ggccagatcg
      301 ggatcgactc gaagacgggt cagatgccgg aaggcatgga agcacagctc gagcaggtgt
      361 ttcgcaatct ccccgcgggg ctcgaagcgt ccgggagcgg catcgatcac gtcgttaaag
      421 cgacagtttt tctggccgac atgaacgact acaacaagat gaacgagctt taccgcgcga
      481 aattcaaagg cgatccaccg gcgcgttcga cggtgcaggt cgcgcgcctc ccgcgagacg
      541 cgcgcatcga gatcgaagtc gtcgccgtcc tcaaatagcg cctgacgcct tttccgcaac
      601 tgagtggcgc tggagaaaat cgagcgtctt ctgattaaac tcttcgacac tctcgtagat
      661 cggcgcgtgt gaagcttcct caaaacccac caactccgaa ttcctgatcg agcttgtcaa
      721 cggttccgca aaacgcaggg acgtgatctg atcgtgacgt ccgaaggtga cctgcgtcgg
      781 cgcggtaatt tctgcgagtc tggattccac gtcgtgtgaa atgacggcgt ttgcctgcgt
      841 gatgtagccg tcgacggaga gcgccggacg gctgcgcgta aaatccgcca gcgattgaat
      901 gtagtcatat ctggttgcgt acaactgcgg agtaaagcac caggggaaca tggtcctaat
      961 caccatctcc ggcacactcc cgatggcttt ggctgcaacc tgccagtcct cgagtacagt
     1021 tttgatgtaa ggatcggttt tgtgccaacc actgtgcagc gacaacgact tcactttgtc
     1081 gggatgcttc gcggcgagcc acatgccgat tgccgcgccg agcgacaatc ccgttacgtg
     1141 cgcgcgcgcg attcccagag cctgcatgaa cgctgcgacg tcgtcggcgt agagttcagt
     1201 gctgtatgga ccatctggtt tgtcgctctc acccgcgcca cgcagatcga cggagatgca
     1261 ggtgaagtgt ttcgagtatt cggcaacttg aaatgcgtag caggcgttgt cggcggagag
     1321 aaacgggatc aggatcagtg gttcaccgtc accctgttgc tcatagttca gcgtaatgcc
     1381 attagcttgc actttaggca tgagctcctc ctttttggcg gtctagtctt tctagactag
     1441 ccgaagcaat agaggcgacc gtcttgagaa ccgatgacga tgcgcccatt ggcgattgcg
     1501 ggggatgctg ataacggcgc gcctgcttcg aactcccaaa gcttcgcgcc gcttgtgaga
     1561 ttcaagacgt agaaacgtcc atcattcgaa ccgacgaaca cacgatctcc ggcgatcgcg
     1621 ggtgatgatt cgacgcgtgc gcgggttgtg aacgtccatg cagctttgcc ctggagggtc
     1681 aatccgtgga ccagcttgtc gcgtccgccg agaacgacgc gcgacgatgt gactgcggct
     1741 gaagagtaga acggaaactt gcgttgcggg tgttcgtagt gccacgcgat cttgcgttcg
     1801 ccgagattga cgctgagcac ttcgt
//
LOCUS       DASWTX010000125         3309 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_391464, whole genome shotgun sequence.
ACCESSION   DASWTX010000125 DASWTX010000000
VERSION     DASWTX010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3309
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_391464"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..897)
                     /gene="cyoE"
                     /locus_tag="VGD38_01965"
     CDS             complement(<1..897)
                     /gene="cyoE"
                     /locus_tag="VGD38_01965"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: protein motif:HMM:NF003349.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HEY0726803.1"
                     /translation="MEEFAIDLRTPAVDVIERSPLSFRERVAAYMELTKPRITFLIVL
                     TSAAGFVLGSPGPVNYVAMLSALFGIGLLSSGIATLNQYAERDLDGLMRRTANRPLPS
                     GKLAPWEALAFGAATTILAEAYLLVFVNPLSALLGLTVIAGYLFAYTPLKTRTSLSTL
                     VGAFPGAVPPLIGWAAARGSISLEGWVLFAILFLWQFPHFLAIAWMYREDYSRAGILM
                     LPVVEPDGRVTAQQIVVYTLMLLPVSVLPTILGMSGRIYLAGAVLLGLLFLYSSLRAA
                     FSMSRQQARRLLLASVLYLPLLF"
     gene            complement(918..1850)
                     /locus_tag="VGD38_01970"
     CDS             complement(918..1850)
                     /locus_tag="VGD38_01970"
                     /inference="COORDINATES: protein motif:HMM:NF014665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0016653 - oxidoreductase activity, acting
                     on NAD(P)H, heme protein as acceptor [Evidence IEA];
                     GO_process: GO:0006784 - heme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HEY0726804.1"
                     /translation="MSKGLNRFAILVACATFFLIIAGALVTSNDAGLATEDWPLSNGQ
                     VFPEMVGNLFWEHGHRMVATTVGMLTIVLLVYIRLKEKRTWVRKLGGYALLMVILQGL
                     LGGLTVKLMLPLAVSTAHATLAQLFFCITVSLAVFTSRSWIEARPLPEEDTEKGSTPL
                     RYLCTAALVTIFIQLILGATLRHSATWDQYQPTELVIAHVCGALAVTVALGKAAFTTL
                     RRYKGHAFLTRPATFALVLLGVQLLLGLGAYLARLASPTDPQPLNPMISITVAHVACG
                     ALVFVTTIVLTLRTYRVLPAADAALELAARPQES"
     gene            complement(1917..2789)
                     /locus_tag="VGD38_01975"
     CDS             complement(1917..2789)
                     /locus_tag="VGD38_01975"
                     /inference="COORDINATES: protein motif:HMM:NF026037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY0726805.1"
                     /translation="MNKQTKVWLVLTIALSLVLAAACGGSGTNSPSPGANTESAGSGP
                     YSGPTGTIAGVISYDGTPPAPRKIDTSADPVCGQKNPNLSTDDTIVTDGKLANAFVYI
                     KEGTVEGGKKVGDYTWATPTTAAQLDQNGCHYAPHVMGVQVNQKISITNSDATQHNVH
                     PTPKLNPEWNQTQANGAAPLEKSFARPEVLIPVKCNQHPWMKAYIGVMRTPFFAVSGK
                     DGSFEIKGVPPGKYTLVAWREGPGNGQEKPMEVTVTANGAAKADFSFSGTATTSLNPS
                     LQMMPAIEFPMLRH"
     gene            complement(2838..>3309)
                     /locus_tag="VGD38_01980"
     CDS             complement(2838..>3309)
                     /locus_tag="VGD38_01980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726806.1"
                     /translation="QMFTSGTPCLKCHITGDPQHDALAIAPNFLLAGERLKPEWTFRW
                     LLDPAQISPGTAMPTGLFRKEGERWVVNLPNPPASATNYHDDHAWLLVRYMFLLSPAE
                     QQALLATSPATPAPATADHHARPKRKRTGFHHRRKPLPAVIGRSAARALVESHR"
BASE COUNT          719 a         1008 c          941 g          641 t
ORIGIN      
        1 aaacagaagc ggcaaataga gaaccgatgc caacagcaac ctgcgcgcct gttgccgtga
       61 cattgagaac gccgcacgaa gactgctgta gagaaagagc aatccgagta gcacggcgcc
      121 ggccagataa atccggcccg acattccgag aatagttggt aacacgctga ctggtagaag
      181 catcaaggtg taaaccacga tctgctgagc agtcacgcgg ccgtcaggtt cgacgaccgg
      241 caacatcagg attcccgccc ggctgtagtc ttcgcgatac atccacgcga tcgccaggaa
      301 gtgcggaaac tgccagagaa acagaatcgc aaacagcacc cagccttcga gactgatcga
      361 accgcgcgcg gcggcccaac cgatcagcgg cggcaccgca ccgggaaacg caccgacgag
      421 tgtcgagagc gacgtgcgcg ttttcagtgg cgtgtaagcg aagagataac cggcgatcac
      481 tgtgagaccg agtagcgcac tcaacgggtt aacaaaaacc agcaagtaag cttcggccag
      541 gatcgtcgtg gctgcaccga acgccagcgc ctcccacggc gccagttttc cggacggcag
      601 cggacgattg gcagtacggc gcatcaggcc gtcgagatct cgttcggcgt actgattgag
      661 cgttgcaatg cctgacgaca aaagaccgat accaaacaac gcgctcaaca tcgcaacgta
      721 attgaccggt cccggcgaac cgagcacaaa ccccgctgct gaagtcaaga cgatcaaaaa
      781 cgtaatccgc ggtttcgtca gttccatgta agcagcgaca cgttcgcgaa acgacaaagg
      841 cgaacgttcg atcacgtcga ccgccggagt acgtaaatcg atagcaaact cttccattaa
      901 gttcctaact atgattccta tgattcctgg ggccttgcag ccaactcgag cgcggcgtcc
      961 gcagccggta agactcggta cgttcgcaac gtcaacacga tcgtcgtcac gaatacgagc
     1021 gcgccacacg caacgtgcgc gacggtgatg ctgatcatcg ggttcaatgg ttgcggatca
     1081 gtcggcgacg ccagtcgcgc gagatatgca cccaaaccga gaagcaactg cacgcctaaa
     1141 agcacgagcg cgaaagtcgc ggggcgcgtc agaaacgcgt gtcccttgta acgccgcaaa
     1201 gtggtgaacg ccgctttgcc aagcgccacc gtaaccgcga gcgcgccgca aacgtgcgcg
     1261 atgaccaact ccgtcggctg gtactgatcc cacgttgccg aatgacgtag cgtcgcgccg
     1321 agaatcaact gtataaagat cgtcacgagc gccgcagtgc aaaggtaacg cagcggcgtg
     1381 cttcccttct ctgtgtcctc ttcgggtaac ggccgcgctt cgatccagct tcgcgaagtg
     1441 aacaccgcca gactaaccgt gatgcagaag aacagttggg ccagcgttgc gtgtgcagtc
     1501 gagacggcga gcggcagcat cagtttgact gtcaacccgc ccagcaatcc ctgcaggatc
     1561 accatcagta acgcatagcc gcccagcttt ctgacccacg ttctcttctc tttcagccgg
     1621 atgtagacga gcaacacaat cgtcagcatg ccgaccgtgg ttgcgaccat gcggtgcccg
     1681 tgttcccaga acaggttacc gaccatttcg ggaaacacct gaccgttgga tagcggccag
     1741 tcttcggtcg ccagtcccgc atcgttactg gtgaccagcg ctccggcaat gattaagaaa
     1801 aacgtcgcgc aagcgacaag aatggcaaat cggttaagac ccttgctcat gaaactctct
     1861 gtttcgcaga ggcgcgcgga ctcgatgtct ttgcgcctcc gcagaaactg cttgttttag
     1921 tgccgcaaca tcgggaactc gatcgcgggc atcatttgca acgacggatt cagtgacgta
     1981 gtcgcggttc cgctaaacga gaagtccgcc ttcgcggctc cgtttgcggt cacggtcact
     2041 tccatcggct tctcctgtcc attccccgga ccttccctcc acgcaacgag ggtgtacttg
     2101 cccggcggca cgcccttaat ctcaaacgag ccgtctttac cgctcactgc aaagaatgga
     2161 gtgcgcatca cgccgatgta ggccttcatc cacgggtgct ggttgcattt caccgggatc
     2221 aggacctcgg gacgcgcaaa gctcttttcg agcggcgcgg cgccgttggc ctgcgtctgg
     2281 ttccattccg ggttcagttt tggtgtcggg tgaacgttgt gttgagtggc gtcgctgttg
     2341 gtgatgctga tcttctggtt gacctgcacg cccatcacgt gaggtgcata gtggcaaccg
     2401 ttctgatcga gctgcgccgc cgtggtgggc gttgcccagg tgtagtcgcc gactttcttg
     2461 ccaccctcga cggttccttc cttgatgtaa acgaaggcgt tggcaagttt gccgtccgtc
     2521 acgatggtgt cgtcggtaga gagatttgga ttcttttgac cgcagaccgg atcggcggaa
     2581 gtgtcgatct tgcggggcgc cggcggggtt ccatcatagc tgatgacccc ggcgatcgtt
     2641 ccggtcgggc cgctgtacgg gccggagccg gcgctttcag tgttggctcc cgggctcggc
     2701 gaattggtac cgctaccgcc gcatgccgct gcaagcacga gcgacagagc aatcgttaac
     2761 acaagccaga cttttgtctg cttattcatt tagaaattcc tccaaactaa gatacttgcc
     2821 caataactgt atccgcttta tctgtggctt tcaaccagcg ctcgcgcggc gctgcggcca
     2881 atcacggcag gcaacggctt gcgtcgatga tgaaaaccag tccgtttccg cttcgggcgc
     2941 gcatgatgat ccgcggtcgc cggcgcagga gtcgccgggc tcgtcgccag caacgcctgc
     3001 tgctcagccg gactcaacag gaacatgtag cgcaccagca gccacgcatg atcgtcgtga
     3061 taattggtcg cactcgccgg cggattcggc aggttcacga cccagcgctc gccttccttg
     3121 cggaacagtc ccgtcggcat cgccgttccc ggactgatct gcgccggatc gagcagccag
     3181 cggaacgtcc actcaggctt caggcgctca cccgccaaca ggaagttcgg cgcgatcgcc
     3241 agcgcatcgt gctgcggatc gcccgtgatg tgacacttca aacacggcgt ccccgacgta
     3301 aacatctgc
//
LOCUS       DASWTX010000126         2031 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_23487, whole genome shotgun sequence.
ACCESSION   DASWTX010000126 DASWTX010000000
VERSION     DASWTX010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2031)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2031)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2031
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23487"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..728
                     /locus_tag="VGD38_01985"
     CDS             <1..728
                     /locus_tag="VGD38_01985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726807.1"
                     /translation="RLAEKETTTLRSDVAYAKAALATTPTAYQRGWDIAGRIDDDRLR
                     SNVRNCLVYRASLQFLTRNDIEKAYELIAKNSDTVQRAASLVVGAQKLLTVKDKTRAS
                     QWLNEARLLIRKTEPEEGAARVAFGMVSAYGKVDRILAFDALADAVRISNNAKLTSID
                     QDRVPLLRRFSGFEIADFSYGTEGFSLKAAIGVFGPKEFDDVLGSINKITADELRGVA
                     VVELCRKYLTSKPVRTVMQAPLQ"
     gene            829..1371
                     /locus_tag="VGD38_01990"
     CDS             829..1371
                     /locus_tag="VGD38_01990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726808.1"
                     /translation="MMEIRPQAMAIPPDTNHLEQGKYGPIYPKTPACYGFSILAKIIP
                     GREPVFHEYAKNIESALKDQPNILAPLKLHYLRWLLFPINGETYFMYQGIFDTDFDKY
                     TEDAVALFGAAGVRTVFENLEGFPMDWQTNPEAFVRFVRDHQVPSFLEYGEYPFFSAD
                     EIKKALRIKSALSEMLDQLQ"
     gene            1415..>2031
                     /locus_tag="VGD38_01995"
     CDS             1415..>2031
                     /locus_tag="VGD38_01995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726809.1"
                     /translation="MSETKIARTYNQNHVPRKYTPGRRRMSIYISWSYPAEAGRNPAE
                     LDHRFSTMTEVRRVAWPAYEDPKWSDPFQFQQGIAGALELFFWAFAPFQEFAGETTGH
                     PVPVFQRIDQAGFKLPLDERVLADTDTLLVFGLDHNVTGQEAATSEIEALKDFLKREG
                     TCLVLGPHHEVGVSEDPKIQNMEYHHHGDALVPRQQHFGRYTRDL"
BASE COUNT          486 a          578 c          549 g          418 t
ORIGIN      
        1 agaggcttgc agaaaaagaa acgacgacgc tgaggagcga tgtcgcttat gctaaggcgg
       61 cgttggccac tacaccaacc gcctaccagc gaggctggga tatcgcgggc aggatcgacg
      121 atgatcgact ccgctcgaat gttcggaact gcctcgtcta ccgcgcgtcg cttcaattct
      181 taacgcggaa cgatattgaa aaagcttatg aactgatcgc gaagaacagt gataccgtcc
      241 agcgtgccgc aagcctggtg gtcggcgccc agaagctgtt gacggttaaa gataaaactc
      301 gcgccagcca atggttgaac gaagcgaggt tgttgatcag gaagactgag cctgaagaag
      361 gtgcggcgcg cgtcgccttt ggtatggttt cggcctacgg aaaagttgac cggatcctgg
      421 cgtttgacgc tcttgcggac gcagttcgaa tctcgaacaa cgcgaaactc acgtctatag
      481 atcaggacag agttcctttg ttacgaagat tttccggatt tgagatcgcc gactttagtt
      541 acggtacgga agggtttagt ttgaaggccg ccatcggtgt tttcggtccg aaagaatttg
      601 acgacgttct gggcagcatt aacaagatca ccgccgatga acttcgcggc gttgccgtgg
      661 tagagctttg ccggaaatac ctgacgtcga aacctgtccg tacggtaatg caagctcccc
      721 tccaataaac taatccactc tcaaacactc acccgcaagt cgacctgaca aaactgacag
      781 tgtctcactc tgcccatccc gcctacattc catcgcaaag gagcaacgat gatggaaata
      841 cgaccgcagg cgatggcgat acccccggac accaatcacc ttgaacaagg aaagtacggc
      901 ccgatttatc cgaagacccc ggcgtgctat ggcttctcga ttctcgcgaa gatcattccc
      961 ggacgagaac cggtgtttca cgaatacgcg aagaacatcg agagcgcgct gaaggaccag
     1021 cccaatattc tcgccccact caaacttcac tacctgcgct ggctgctctt tcccatcaac
     1081 ggcgaaacgt acttcatgta ccagggcatc ttcgataccg acttcgacaa gtacaccgaa
     1141 gacgccgtgg ccctgttcgg cgccgccggt gtgcgcaccg ttttcgaaaa cctcgaaggc
     1201 tttccgatgg actggcagac caaccccgaa gcgttcgtca gattcgtgcg ggaccatcag
     1261 gtcccgagct tcctcgagta cggcgagtat cctttcttca gcgccgacga gatcaagaag
     1321 gcgttgcgga tcaagagcgc gctttcagag atgctcgatc agttgcagtg agtcttcccg
     1381 atccgatcga cgacgtttct gagcaaggag tgaaatgagc gaaacgaaga tcgcgcgcac
     1441 ctacaaccag aaccacgtgc cgcgcaaata cacgcccggc cgccgtcgta tgagcattta
     1501 catctcgtgg agttatcccg ctgaagccgg acgcaatcct gccgaactcg atcaccggtt
     1561 ctcgacgatg accgaagtgc gacgcgtcgc gtggcccgcg tacgaagatc ccaaatggtc
     1621 cgatccgttt cagtttcaac aaggcatcgc gggagcactg gagctgttct tctgggcctt
     1681 cgcgccgttt caggagtttg ccggcgaaac gacgggccac ccggtgcccg tgtttcaacg
     1741 tatcgatcag gcaggattca aacttccact cgacgagcgc gtgctcgccg acaccgatac
     1801 gttgctggtg tttgggttgg accacaacgt caccggccag gaagctgcca cttcggagat
     1861 cgaagcgttg aaagattttc tcaagcgtga aggaacgtgc ctggtgcttg gtccacatca
     1921 cgaagtcggc gtgtcggaag atccgaagat ccaaaacatg gagtatcacc atcatggcga
     1981 cgcgctcgtt ccgcggcagc aacacttcgg ccgctacacg cgcgatttaa t
//
LOCUS       DASWTX010000127         4169 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_110318, whole genome shotgun sequence.
ACCESSION   DASWTX010000127 DASWTX010000000
VERSION     DASWTX010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4169
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110318"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(166..1107)
                     /locus_tag="VGD38_02000"
     CDS             complement(166..1107)
                     /locus_tag="VGD38_02000"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY0726810.1"
                     /translation="MKLFIAGGTGAIGRPIVEQLLAKGHSVVALTRSADQAPALVERG
                     IEPAVADVFDPDAVKAVLNRAQPEVVIETLTALPRSYTAETMSAAAPLNTRIRLEGGA
                     NVLAAAQAAGVRRYVRQSIAFWAIPGPGLADEETPLAFDASPAVAADARVVNELEQSL
                     LAAPDIEGIVMRYGFFYGPGTWFNPDGDVAGQVRQQQFPIVGDGEGVWSWLHIDDAAI
                     ATVAAAERGNPGIYLIANDQPLAVREWLPAFARWVDAPPPPRISVEDALKTGGADAVY
                     YGTRLRGVSTAKAKRELGFQPRRLEWIIETATANASS"
     gene            1359..1736
                     /locus_tag="VGD38_02005"
     CDS             1359..1736
                     /locus_tag="VGD38_02005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726811.1"
                     /translation="MNTAGIENNWSLIGLEWIARVASLASIALLAMIFLGEPFQPSQI
                     SFQEWVGLSFFPIGVVVGMIIAWRKEALGGVVTVASLAGFYLVYGYLFRNHIGGWFFL
                     AFAAPGFLFLFHWLLSRPAETAR"
     gene            complement(1747..2694)
                     /locus_tag="VGD38_02010"
     CDS             complement(1747..2694)
                     /locus_tag="VGD38_02010"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY0726812.1"
                     /translation="MSDKMKILIAYDGSACAEAALDDLQRAGLPEVAEAVVMSVTEVW
                     LPAPPPSSLEVVEMARAVHVPADMTRVYSHNSPAVQVAQALADRAATRLRTNFPGWQV
                     TTEAAAGSPRHEIIHQANQWKPDLIVVGSHGHSMLGRLVLGSVSQGVLTDAHCSVRIA
                     RGRIEEPNSPVRIVIGVDGSDASAAAVREVAARRWAPLSEVKIISVTDPLSAGLIGNL
                     IPPVRDFVKETKEEEQEWLIELLNKSSEEFKTSSLKVSTQILEGDPRRDLAKAAEEWG
                     ADCIFVGSVGFNSRFERLVLGSISGAVAARAHCSVEVVR"
     gene            complement(2714..>4169)
                     /locus_tag="VGD38_02015"
     CDS             complement(2714..>4169)
                     /locus_tag="VGD38_02015"
                     /inference="COORDINATES: protein motif:HMM:NF015094.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AarF/ABC1/UbiB kinase family protein"
                     /protein_id="HEY0726813.1"
                     /translation="LGQILSTRADLLPPDYLAELSKLQDSAPAVPFEAIREAVLKELG
                     QPIEDVFLEFDPKPLAAASIGQAHTARLKDGTEVVVKIRRPGVVQQVDEDLKILKELA
                     DAVSGRLELADRYDIPGIVEEFSETLRAELDYIREGHNAERFAENFAGERRLHIARVY
                     WETTTSRVLTLERIRGTKISDVASLDKQGIDRPELAKFATDVVMRMVCEHGFFHADPH
                     PGNFFIEPDGTIGLIDFGMVGALDEQTQDHLADLLIYINHQDADRLVDVLLDLGVSRK
                     PVDRALLRHDVQHLLTSYWGLPLGELRITALLNDVFAAMRKNHLHLPSNLSLLFKTII
                     MIEGMGVQVDPQFRMTTVLESYADRLIMRKYSPLRLIRNLGAASLDLARLGTEMPQHL
                     RRIVNATENGRLQVGMRPEGFDPIINRFETISNRIVLGVIAAAFINGLAVLASVYRPP
                     GWESWAWVVFAFGFLCALTLAMYLVVNILRPRRR"
BASE COUNT          895 a         1242 c         1114 g          918 t
ORIGIN      
        1 gtgtaaccga cgtctgtatc gatcactccg ggaacatcgc gcaggatttc ttccactccc
       61 cagaagcacc cgccggcgag caccgctacc tcctgctgct gttgttgttg cggcggcgcg
      121 gtatctgatc gagtgactgc agattcattc attagtattt tcctttcaag aactggcgtt
      181 agctgtcgcg gtctcaatta tccactccaa ccgccgcggc tgaaaaccga gctcgcgttt
      241 cgcctttgca gtcgacacgc cccgcagtcg agtgccgtag taaaccgcgt ccgcgccacc
      301 cgttttaagt gcatcctcaa ctgagattcg cggcggtggt ggagcatcaa cccatcgagc
      361 aaatgcaggg agccattcgc gcacggctaa aggttgatcg ttcgcgatca ggtaaattcc
      421 cggattgcct cgctcggctg ccgcgaccgt ggcaattgcc gcgtcgtcga tgtgtaacca
      481 cgaccagacg ccttcgccat ctccgacgat agggaactgc tgctgtcgta cctgtccagc
      541 cacatcgcca tcggggttga accacgtgcc tggtccatag aagaagccat aacgcatcac
      601 gatcccttct atgtccggcg cggcgagtaa gctttgctcg agttcattca caacgcgagc
      661 atctgccgca accgccggcg aggcgtcgaa cgcgagaggc gtttcttcat ccgccagtcc
      721 aggacccgga atcgcccaga acgcgatcga ctgcctcaca tagcgccgca cgcccgccgc
      781 ttgtgcagcg gccagcacat tcgcaccacc ttccaagcgg atgcgggtgt tgagaggcgc
      841 ggcggcgctc attgtctccg cggtgtagct cctcggcagc gcggttagcg tttcaatcac
      901 gacctccggc tgagcgcgat tgagaacagc tttgaccgca tcgggatcga atacatcggc
      961 gacggccggt tcgatacctc gttccactaa agccggagcc tgatccgcag aacgggtcag
     1021 cgcaactacc gagtgtcctt tggcaagcaa ctgctcgact attggacgac cgattgctcc
     1081 cgttcctcct gcaataaaca acttcatctt ttgtatctcc tgatggaacg atcttgcgcc
     1141 tcaccattca ttttggaaac cctagatcgt gcgagcacca gatcactcat tcgagttatt
     1201 ggcgcctcac ccaccgcacg gaaatttccc gcaagcaatg tggaagtttc cgcagaaaaa
     1261 gattcgtaca aagcgcagtt acgaagcttt tcaccggtcc aaatcttgca ctcatacgag
     1321 gcgctgagcc atgtgtaatc acatgagcag gaggggttat gaatacggct ggaattgaaa
     1381 acaattggag tttgatcgga ctcgaatgga ttgcaagagt tgcaagcctc gccagtatcg
     1441 cgcttctcgc gatgatcttt cttggcgagc cttttcagcc ctcgcaaatc agttttcagg
     1501 aatgggtcgg actgagcttc tttccgattg gcgtagtggt gggcatgatc atcgcgtggc
     1561 gcaaggaagc gctcggtgga gttgtgaccg ttgcgagttt ggctggtttc tatctcgtct
     1621 acggttacct gtttagaaac cacatcggcg gctggttctt cctggctttt gccgctcccg
     1681 gtttcttatt ccttttccac tggctcttgt cgcggcccgc ggagaccgct cgttagagac
     1741 gttgcgttat ctcacaactt caacggaaca gtgtgcgcga gctgcgaccg cgcctgagat
     1801 actgccgagc acaagccgtt cgaaccggct gttgaaaccg accgatccga cgaagataca
     1861 gtcagcgccc cattcttcag cggccttcgc taagtcgcgt ctcggatcgc cttccaggat
     1921 ctgagttgaa actttcaagc tcgacgtttt gaattcctca gacgatttat tcaggagctc
     1981 aatcaaccac tcctgttcct cttccttcgt ctccttcaca aaatctcgaa ccggcgggat
     2041 gagattgccg attaaccctg cggacagagg atcagtcacg gaaataattt tcacctcgct
     2101 cagcggcgcc caacgtcgag ctgcgacttc acgtaccgcg gcggcgctgg cgtcggatcc
     2161 gtcaactcca atcacgatac gaaccggact gttcggctct tcaatgcgtc cacgcgcgat
     2221 ccgcaccgaa cagtgagcgt cagttaacac gccttgtgaa acgcttccca gcacaagccg
     2281 gcccagcatc gagtggccgt gtgaaccgac cacgatgaga tcgggtttcc attgattggc
     2341 ctggtggatg atttcgtgcc gaggtgatcc ggcggccgcc tcggttgtta cctgccagcc
     2401 cggaaagttc gtgcgcaagc gcgtagctgc gcgatccgcg agagcctgcg ccacctgaac
     2461 cgcgggcgag ttgtgggaat agacgcgcgt catatcggca ggcacgtgaa ctgcgcgcgc
     2521 catctcgacg acctcaaggc tcgagggtgg cggcgccggc aaccagactt cagtaacaga
     2581 cataacgacc gcttcggcaa cttccggtaa gcccgcacgc tgaagatcat ccagtgctgc
     2641 ttcggcacat gctgaaccat cgtaagcaat caggattttc attttgtccg acatcacaag
     2701 cctcctaaca aaactatctg cggcgcgggc gcaggatatt cacgaccagg tacatcgcca
     2761 gcgtcagcgc acacaggaag ccaaaggcaa acaccaccca ggcccaactc tcccagcctg
     2821 gcggacgata cactgatgca agcactgcga gcccgttgat gaacgcggcg gcgataactc
     2881 ccaaaacgat tcgattcgag atcgtctcaa accggttgat gatcggatcg aaaccttcgg
     2941 gcctcatgcc gacttgcagc ctgccattct cagtcgcatt cacgatccgc cgcagatgct
     3001 gaggcatctc ggtaccgagc ctcgcaagat ccagactagc cgcgcccaga ttgcgaatca
     3061 gtctaagcgg cgagtactta cgcattatca atctgtccgc gtaagactcc aaaaccgttg
     3121 tcatgcgaaa ctgcggatcg acctgcacgc ccatgccttc gatcatgatg attgtcttaa
     3181 acagcagcga aaggtttgag ggcagatgca aatggttttt gcgcattgct gcgaagacgt
     3241 cgttgagtag cgcggttatt cgtaactcgc ctaacggaag accccaatag ctcgtcaaga
     3301 gatgctgaac gtcgtgacgt agcaacgcac ggtctacggg tttcctgcta acaccgagat
     3361 ctaagagaac gtcgaccaga cgatcggcat cctggtggtt tatgtagatg agcaggtcgg
     3421 cgagatggtc ctgcgtctgc tcgtcgagag ctccaaccat accgaaatca atcaaaccga
     3481 tcgtgccgtc cggctcgatg aagaagtttc ccggatgcgg atcggcgtga aagaatccgt
     3541 gttcacagac catgcgcatt acgacgtcag tcgcaaactt tgcgagctcc gggcgatcga
     3601 ttccttgttt gtccagactc gcgacgtcgc tgatctttgt gccgcgaatg cgttccagtg
     3661 tgaggacgcg cgaagtggtt gtctcccagt agacgcgtgc gatatgaagg cgacgttcgc
     3721 cggcgaagtt ttcagcaaac cgctccgcgt tgtgtccttc gcggatgtaa tcgagctcgg
     3781 cacgcagcgt ctctgaaaac tcttcgacga tgcccgggat gtcataccga tcggccagtt
     3841 ccaaacggcc gctgacagca tcagccagct ctttgaggat tttgagatcc tcgtcgactt
     3901 gttgcaccac tccgggccgg cggatcttca ccaccacctc ggtgccatct tttagtctcg
     3961 ccgtgtgtgc ctgaccgatt gacgcagccg ccaaaggttt cggatcgaac tcgagaaaga
     4021 cgtcctcaat cggttggccc aattctttta gaacggcttc tcttatcgcc tcgaacggca
     4081 ctgccggagc agagtcctga agcttactca actcggcgag ataatcgggc ggaagcaagt
     4141 ccgcgcgcgt ggagagtatc tggcccaac
//
LOCUS       DASWTX010000128         2088 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_391558, whole genome shotgun sequence.
ACCESSION   DASWTX010000128 DASWTX010000000
VERSION     DASWTX010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_391558"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(246..1295)
                     /locus_tag="VGD38_02020"
     CDS             complement(246..1295)
                     /locus_tag="VGD38_02020"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0726814.1"
                     /translation="MKFVPTRSKLSLLFLIVFLAAAAFLITPALPQTRERTVGPSRAE
                     ANIKVAEVIKTDVDLVTVDALVLQKNTARVMGGLTQADFVISEDGKNQTITHFSQDSL
                     PLSVLLLIDRGGCLDPFSEEVRTAARDAVLRLKSTDEVAVMTYHDRVELRQEFTRDRR
                     AVDQALRYVPPHDERADHCLNIALDKAANYMMNAANPNGRRVIILITAVTRNWDCRAG
                     PSNKAAVHSVFESGSVVCGIVPKTPEQMAENGMMRWATRLGRIAGASYLDIQKLADDT
                     GGEIMHDHPDVLDRSFVTLVTHLRTRYSLSFVSSNKVRDGKVRKLKIDVANNAEKSRG
                     KLVVKARKSYVAPKS"
     gene            complement(1378..>2088)
                     /locus_tag="VGD38_02025"
     CDS             complement(1378..>2088)
                     /locus_tag="VGD38_02025"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HEY0726815.1"
                     /translation="YAPSLSALREMRKLRLPVGRLNSLLVAYGNPELSTTFKTRFELA
                     YAGIKLEPSVENEEDLKRIAASYGTNRLYVGPQASEERIKSDTSRARIVHFAGPVVLD
                     DTSPMSSFMGLSSTANQQDGFLQLREIMDLQSTAELVVAPKGQTGAGFSGDAAVGFSW
                     AWFVSGTPATLVSRWQVEAPVSSQFLTNFYSSIRPAGRAAVSKTRALRQSLLAIRRSP
                     DHQHPYYWANLALMGDAR"
BASE COUNT          438 a          597 c          594 g          459 t
ORIGIN      
        1 acgccttttc ccgccaaggt caaacaaata ctggccgagt agtggacgtg aggcggcacg
       61 tcgtaatgag cgtgcagctt ctcgcttaac gtcaagtcag acagtttgag cttgtggagt
      121 tcctggcgga caggcttcgg agccgagatt gtttccagtt ttgcggggtg catattcctt
      181 gcgccgaaag ggacagtgct ctaaacgatc ccggcggcag gaatgttcac cccggccctg
      241 gattttcagc tcttcggagc cacgtaactc ttccgcgctt tcaccaccag cttgccccgc
      301 gacttctcgg cgttgttcgc cacatcgatt ttcagctttc gcactttccc atcgcgcacc
      361 ttgtttgagg aaacgaacga aaggctgtag cgcgtgcgca ggtgcgtgac gagcgtgacg
      421 aaggaacggt ccagaacgtc ggggtggtcg tgcatgatct cgccgcccgt gtcgtcggca
      481 agtttttgaa tgtcgagata actcgcaccc gcaatccggc cgaggcgagt ggcccaacgc
      541 atcatgccgt tctcggccat ctgttccggc gttttcggaa ctatgccgca aacaacgctg
      601 ccggattcga aaacggagtg gaccgctgcc ttgtttgacg ggccagcgcg gcaatcccag
      661 tttcgggtga cggccgtgat caggatgatc acgcggcgcc catttggatt ggccgcgttc
      721 atcatgtagt tcgcggcctt atcgagcgcg atgttcagac aatgatccgc gcgttcgtcg
      781 tgcggcggca cgtagcgtag tgcctgatcg actgcgcgcc ggtcccgcgt gaactcctgc
      841 cgcagctcca cgcgatcgtg ataagtcatc accgcgactt catcggtcga cttgagacgc
      901 agcaccgcat ctctagccgc ggttctgact tcctcgctaa acggatcgag acaaccgccg
      961 cgatcgatga gcagcaacac agacagcggc agactgtcct gactgaagtg tgtaatcgtc
     1021 tggtttttac cgtcctcgga gatcacgaag tctgcctgcg tcagaccacc cataacgcgt
     1081 gcagtgtttt tctgaagcac gagagcatcg acggtgacga gatcgacgtc ggtcttgatt
     1141 acctcggcga ctttaatatt ggcttcggcg cggcttggcc caacggttcg ttcgcgtgtc
     1201 tgcggcaacg caggcgtgat caaaaacgca gcggccgcca ggaagacgat caggaaaagg
     1261 agagagagct ttgagcgtgt cgggacgaat ttcatagcac ctcctcgagt tgtagctatc
     1321 ggggagagag ctaagtgggc cgatgataga tcggttttcg ttttttgagt agggttttta
     1381 gcgtgcgtcg cccatcaacg caaggttggc ccagtagtac ggatgttgat gatcgggtga
     1441 acgcctgatt gccaaaaggc tttgccgcag cgctcgggtt ttggacaccg cggcacggcc
     1501 tgccggcctg atggaagaat agaagttagt aagaaactgc gatgacactg gcgcttcaac
     1561 ttgccaacga ctcaccagtg tcgcgggagt gccactgaca aaccacgccc acgaaaaacc
     1621 aaccgccgcg tctccactaa aacccgcgcc cgtctgtcct tttggcgcaa cgaccagttc
     1681 agcagtgctt tgcagatcca tgatctcgcg caactgaaga aagccgtctt gttgattggc
     1741 cgtagatgac aatcccatga acgacgacat cgggctcgtg tcgtccaaca ccacgggacc
     1801 agcgaaatgc acgatccgtg cgcgcgacgt gtccgacttg attcgctctt cactcgcttg
     1861 tggaccaacg taaaggcgat tcgtgccgta gctcgccgct atgcgtttga gatcttcttc
     1921 gttctcaaca gacggttcca gttttattcc cgcgtaagcg agctcgaagc gcgtcttgaa
     1981 cgtcgtcgat aattccggat tgccgtaagc gaccaacaac gaattcaaac gcccaaccgg
     2041 cagacgcagc tttcgcattt cacgcagcgc cgacaaagac ggcgcgta
//
LOCUS       DASWTX010000129         1753 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_261350, whole genome shotgun sequence.
ACCESSION   DASWTX010000129 DASWTX010000000
VERSION     DASWTX010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1753
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261350"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1753
                     /gene="acnA"
                     /locus_tag="VGD38_02030"
     CDS             <1..>1753
                     /gene="acnA"
                     /locus_tag="VGD38_02030"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: protein motif:HMM:NF006757.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HEY0726816.1"
                     /translation="DSGPVGQFFSLPQLEKNGVGPVSRLPHSLRVVLESVLRNYDGQK
                     ITEDDVRELANWQPNGERTEEIPFVVARVLLQDFTGVPLLVDLAAMRSACARLGKNTG
                     IIEPLVPVDLVIDHSVQVDFSSTRDAFDKNMEMEFKRNRSRYQFLKWGTQAFDGFCVI
                     PPGIGICHQVNLEYLARNVWEKTVYFPDTLVGTDSHTTMINGLGIVGWGVGGIEAEAA
                     MLGQPVYFLTPDVVGVHLSGSLNEGVTATDLVLRVTEMMRKAKVVGKFVEFHGTGAAS
                     LSVTDRATIANMAPEYGATMGFFPVDEETCAYLIATGRSEEHVDLVREYYKAQGMFGV
                     PKQGECDYSVVFDLDLGSIVPSVAGPKRPQDRIDLPKLKDQFNELMLKPASEGGYGKT
                     EDDLSTRFHVKIGADRQRLIAGGGEQRQETVPAAVANHVSEQETSVWTETEMVNNRPT
                     PDLVAEIPEDEFPTGDELLGHGDVLIAAITSCTNTSNPSVMLAAGLLARKAVERGLTV
                     SPKVKNSLAPGSRVVTDYLDRTGLQPYLNELGFNLVGYGCTTCIGNSGPLDPAIDQVV
                     NERDVIGVSVLSGNRNFE"
BASE COUNT          364 a          472 c          537 g          380 t
ORIGIN      
        1 tgattccggt ccggttggac aattcttttc actgccacaa ctcgagaaaa acggcgttgg
       61 tccggtttcg cgactaccgc acagcctccg cgtcgtgctc gaatcggtgc tgcgtaacta
      121 cgatggccag aagattaccg aagacgacgt gcgtgaactg gccaactggc aaccaaacgg
      181 cgagcgcacg gaggagattc ctttcgtcgt ggcgcgcgtg ctgcttcagg acttcaccgg
      241 cgtgccgctc cttgtagatc ttgctgccat gcgctccgcg tgcgcgcgac tcggaaaaaa
      301 caccgggatc atcgaacccc tcgtgcccgt cgatctcgtg atcgaccact cggtccaggt
      361 tgacttctcc agcactcgcg atgcgtttga taagaacatg gagatggagt tcaaacgcaa
      421 tcgttcgcgt taccagtttt tgaagtgggg cacgcaggcg tttgacggct tttgtgtgat
      481 tccgccgggc atcggcatct gtcaccaggt caatctcgaa tatctcgcgc gcaacgtatg
      541 ggaaaagacg gtttactttc ctgacacgct cgtcggcact gactcgcaca cgacgatgat
      601 caacggactc ggcattgttg gttggggcgt cggcggtatc gaagccgaag cggcgatgct
      661 gggccagccg gtctattttt tgacgcctga cgtcgttggc gttcacttga gcggcagttt
      721 gaatgaaggc gtgacggcga cggatctcgt gcttcgcgta acggagatga tgcgcaaggc
      781 aaaggtcgtc ggtaagtttg ttgagtttca cggcacgggc gccgcgagtc tttcggttac
      841 ggatcgcgca acgatcgcga acatggcgcc ggagtatggc gcgacgatgg gtttcttccc
      901 agtcgacgag gagacatgcg cgtatctgat cgccaccgga cgttctgaag agcacgtgga
      961 tcttgtgcgt gagtattaca aggcgcaggg catgttcggc gtcccgaaac aaggcgagtg
     1021 tgactacagc gtcgtcttcg atctcgatct cggttcgatt gtgccgagtg ttgccgggcc
     1081 aaagcgcccg caggatcgaa tcgacctgcc gaagctgaaa gatcagttca acgagctgat
     1141 gctgaaacct gccagtgagg gtggttacgg gaagactgaa gatgatttgt caacgcgttt
     1201 tcacgtgaag atcggcgcgg accggcaaag attaatagcc ggcggcggtg aacagcggca
     1261 ggaaactgtg ccggcggctg ttgcgaacca tgtctccgag caggagacga gcgtctggac
     1321 cgaaacggaa atggtcaaca accgtccgac ccctgacctt gtcgcggaga ttcccgaaga
     1381 cgagtttccc accggtgacg aactgctggg ccatggtgac gttctgatcg ccgcgattac
     1441 gtcctgcacc aacacttcca atccgagcgt gatgctcgcg gccggactgc tcgcgaggaa
     1501 agccgttgag cgtggattga ctgtgagtcc gaaagtgaaa aactcgctcg cgcccggctc
     1561 gcgtgtagtt acggattatc tcgatcgcac tggcctgcaa ccgtatttga atgagctcgg
     1621 gttcaatctc gtcggttatg gttgcaccac gtgcatcggt aattccggcc cactcgatcc
     1681 ggcgatcgac caggtcgtaa atgagcgcga cgtgatcggc gtgtcagtcc tgtctggaaa
     1741 cagaaacttc gag
//
LOCUS       DASWTX010000130         1882 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_87948, whole genome shotgun sequence.
ACCESSION   DASWTX010000130 DASWTX010000000
VERSION     DASWTX010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1882
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87948"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..348)
                     /locus_tag="VGD38_02035"
     CDS             complement(<1..348)
                     /locus_tag="VGD38_02035"
                     /inference="COORDINATES: protein motif:HMM:NF017999.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEY0726817.1"
                     /translation="MAFKIEERFEVQAPVERVWQYMIDPKRVVQCLPGAELLEQKDDQ
                     TFLGAIKVKVGPLSMSYKGQAKFTEINAETHQVRMVGDAREVGGSGSTKVSMLSTVTA
                     SANGGSEVLVSADI"
     gene            438..1313
                     /locus_tag="VGD38_02040"
     CDS             438..1313
                     /locus_tag="VGD38_02040"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HEY0726818.1"
                     /translation="MIPRSFEYFSPRTLDEAIALLQKLGPEAKLLSGGQSLIPMMKLR
                     LVSPEYIVDINRIPELDYISESDGHLRIGCLAREHELESSEVVKTRFPILSDTAKVIA
                     DPLVRSQATICGNLAHGDPANDHPATMMALGATVVATGPNGQREIPVKDFFPGLFTTA
                     LEPEEILTEIKIPFPPPRSGGAYLKLERKVGDFATAGVAVQITLDDADVCKYAGIGLT
                     NVGMTPIKATQTENFLAGKKLDDATIQQASEMAASESQPMDDIRGSADYKRDLVRVLT
                     ARALTTAANRAKGGA"
     gene            1316..1801
                     /locus_tag="VGD38_02045"
     CDS             1316..1801
                     /locus_tag="VGD38_02045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017953226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEY0726819.1"
                     /translation="MAKVPIKVNVNGAEQTAEIEPRLLLVHFLRENLRLTGTHIGCDT
                     SHCGACTVVLDGKPVKSCTVFAVQADGRSITTVEGLEQDGKLHPLQDGFFQEHGLQCG
                     YCTPGMLMTGYAFLKENSDPTDDEIRHAISGNLCRCTGYVNIVKAYQYAAQKMRENGG
                     A"
BASE COUNT          455 a          596 c          479 g          352 t
ORIGIN      
        1 gatatcggca ctaaccaaaa cctccgaacc tccgttcgcc gacgccgtaa ccgtgctcaa
       61 catcgacacc ttcgtcgatc ccgatccgcc aacctcgcgc gcgtccccga ccatgcgcac
      121 ctggtgcgtc tccgcattga tctcggtgaa cttcgcctgg cctttataag acatcgacag
      181 cggccccacc ttcaccttga tcgcgccgag aaacgtctgg tcgtccttct gctcgagcaa
      241 ctccgcaccc ggaagacact gaaccactcg cttcggatcg atcatgtatt gccaaacgcg
      301 ctcaaccggc gcctgcacct cgaagcgttc ctcaatcttg aaagccatct ttcatctcct
      361 ttgcagtcca cggattacac agattaaact atcgccgcta aatctgtgta atctgtggac
      421 gttttgaggt gacccctatg atacctcgga gctttgaata cttctctccc cgcacgctcg
      481 acgaagccat cgcgctgctg caaaaacttg gaccagaagc caagctgctg tccggaggcc
      541 agagtctcat accgatgatg aagttgagac tcgtttcccc cgagtacatc gtcgacatca
      601 atcgcatacc tgaactcgat tacatctcag agagcgacgg tcatctgcgc atcggctgtc
      661 tcgcgcgcga acacgagctc gaatcttcag aagtagtaaa aacaagattc cccattctca
      721 gcgacacggc aaaagtgatc gcggatccgc tcgtgcgcag ccaggccacc atctgcggca
      781 atctcgctca cggcgatccc gcaaacgatc atccggcaac gatgatggcg ctcggagcaa
      841 ccgtggtcgc aaccggtcca aacggacaac gcgagattcc cgtcaaagac ttcttccccg
      901 gcctgttcac aaccgcgctc gaaccggaag agattcttac cgagatcaag atcccgtttc
      961 caccaccgcg aagcggaggc gcgtatctga agctggaaag aaaagtcggc gacttcgcca
     1021 ccgcgggtgt cgccgtgcag atcacactcg acgacgcgga cgtttgcaaa tacgccggca
     1081 tcgggctgac gaacgtcggc atgacgccga tcaaagcgac gcaaacagaa aactttctcg
     1141 ccggtaaaaa gctcgacgac gccacgattc aacaagcttc cgaaatggcc gcatcagagt
     1201 cgcaaccaat ggatgacatc cggggttcag ccgattacaa gcgcgatctg gttcgcgttc
     1261 tgaccgcacg cgctcttaca actgccgcga accgcgcgaa gggaggagcc taacgatggc
     1321 gaaagtgcca attaaagtaa acgtcaacgg cgcggaacag accgccgaga tcgaaccgcg
     1381 cttgttgctg gtccatttcc tccgcgaaaa cttgcggctc acgggcacgc acatcggttg
     1441 cgacacgagc cactgcggcg cgtgtacagt cgtgctcgat ggaaaacccg tcaagtcgtg
     1501 cacggtcttc gcagtccagg ctgacggccg ttcgatcacg acggtcgaag gtctcgaaca
     1561 ggatggcaaa ctgcatccgc tacaggatgg cttctttcag gaacacggac tgcaatgcgg
     1621 ctactgcacg cccggaatgt tgatgaccgg ctacgcgttc ctgaaagaaa acagcgatcc
     1681 gactgacgac gagattcgtc acgcgatctc cggcaacctc tgccgttgca cgggctacgt
     1741 gaacatcgtc aaggcttatc aatacgccgc gcaaaagatg cgcgaaaacg gaggtgcgtg
     1801 atggcgccaa agacatcacc cgaaatcggt ggcatgggcc actccgtcaa acgcaaagaa
     1861 gatccgcgct tcctacgcgg tc
//
LOCUS       DASWTX010000131         3106 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_261366, whole genome shotgun sequence.
ACCESSION   DASWTX010000131 DASWTX010000000
VERSION     DASWTX010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3106)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3106)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3106
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261366"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..339)
                     /locus_tag="VGD38_02050"
     CDS             complement(<1..339)
                     /locus_tag="VGD38_02050"
                     /inference="COORDINATES: protein motif:HMM:NF012444.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726820.1"
                     /translation="MSQIIGKKRERVEEAKRVIPLERLRTEAFAKREHAPSHALRRAL
                     QADGINIIAEFKRRSPSKGVIRADADLSQIVRSYQAGGAAAVSVLTEHDYFDGSLADL
                     RAVKQSIELPV"
     gene            complement(355..1377)
                     /gene="trpD"
                     /locus_tag="VGD38_02055"
     CDS             complement(355..1377)
                     /gene="trpD"
                     /locus_tag="VGD38_02055"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR01245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEY0726821.1"
                     /translation="MGQHGLCEFIARLVRREDLSRDEAGQLLESLLDAEATDAQIAAA
                     LVALAAKGETVEELTGMAMGLRSRAVRVNSCHSCFIDTAGTGSSRAKTFNISTAAAFV
                     IAGAGLPVAKHGNRAASSKSGSADLLTALGVNVSAIPSVSETALNEIEICFMFAPLYH
                     GATARVAGIRRQLGIHTTFNLLGPLSNPAGAPRQIIGVWRKDLAERLASVLAALGTEH
                     AWVVHGEDGLDEITLAGKTHVAEARGGEVRTFEIAPEDFGFAAAALDHLRGGDTEANA
                     AIVRAVLERKRHDEARTLVIMTAAAALKLGGVADDLRDGARRAAEAIDSGAALAKLER
                     LIQVTN"
     gene            complement(1378..1944)
                     /locus_tag="VGD38_02060"
     CDS             complement(1378..1944)
                     /locus_tag="VGD38_02060"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: protein motif:HMM:TIGR00566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046820 - 4-amino-4-deoxychorismate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEY0726822.1"
                     /translation="MLLVIDNYDSFTYNLVQYLGELGEQVEVRRNDRVTVQEIESELR
                     PERIVISPGPGTPDTAGVSLEVIERFAGKVPLLGVCLGHQAIGQAFGGRVIRAPELMH
                     GKASEVIHDGKTIFEGLTDRFQAGRYHSLIVEKESLPSSLEISAHTADDVIMGLRHRE
                     LKVEGVQFHPESILTSEGKQLLANFLKL"
     gene            complement(1944..2750)
                     /locus_tag="VGD38_02065"
     CDS             complement(1944..2750)
                     /locus_tag="VGD38_02065"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEY0726823.1"
                     /translation="MQKVTLPFVIVACVLALSGCLNADRQSQPRPEAAQQLLKLRGYE
                     FNEKSFFAAAQARDMLAINAFFDAGINPNAQDGDGRTVLISAAARGDVQVVNALLSRG
                     VDPNIKDQRGYTAMSHAMEAMYEDVVDALLASPDLNPNSRGKNGRPALMAYVWRDNKD
                     RVEKLLAHGADVNALDEDGDTALHGAGQTGNVEIVRMLLDKGANPNVQNKVGGTPLMW
                     AAVYGNVDAARLLLSRGADPTLKDNDGITAAEWAVRNKREGVVQLLKGKR"
     gene            complement(2738..>3106)
                     /locus_tag="VGD38_02070"
     CDS             complement(2738..>3106)
                     /locus_tag="VGD38_02070"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0016018 - cyclosporin A binding [Evidence
                     IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEY0726824.1"
                     /translation="DTTIFSRVVPGFVIQGGDLQTSEKWGVELAKRMSRRLPDEPGLV
                     KHVRGIVSMARTNEPNSATTHFFILLRESPHLDSKFAAFGTVTKGMEVVDAINQAPVQ
                     AEKPEKPVKINRATVATCKK"
BASE COUNT          621 a         1055 c          804 g          626 t
ORIGIN      
        1 gacgggcaat tcgatagact gcttcacagc tcgaagatca gccagggatc cgtcgaagta
       61 atcgtgctcg gttaggactg agacagccgc tgcgccgcca gcctggtagc tgcgcacgat
      121 ttgagaaaga tcagcgtcgg cacggattac gccttttgat ggcgaacgtc gtttgaactc
      181 agcgatgatg ttgattccat cagcctgcag agcacgccgc aacgcatgcg acggcgcgtg
      241 ttcacgcttc gcgaacgcct cggttcgcag gcgttcaagt ggaataacgc gcttcgcctc
      301 ttccactcgc tcgcgcttct tgccgatgat ttgcgacaac acattcatcg cactttagtt
      361 agtcacttga atcaaacgtt ccagcttcgc caacgccgca ccactgtcga tcgcttcagc
      421 cgcacgccgc gcgccatcgc gcagatcgtc cgcaacgcct ccgagcttca gcgccgccgc
      481 cgctgtcatg atcacgagtg ttcgcgcctc gtcgtgacgc ttccgttcga gcaccgcgcg
      541 aacaatcgcg gcattcgcct ccgtgtcacc gccgcgcaaa tgatcgagcg ctgccgcagc
      601 gaaaccaaaa tcctccggcg cgatctcgaa agttctcact tcaccaccac gcgcttcagc
      661 aacgtgcgtc ttcccggcga gcgttatctc atccaaaccg tcttcaccgt ggaccaccca
      721 cgcgtgctcc gttccgagcg ccgccaacac actcgccaaa cgctcggcga gatccttgcg
      781 ccacacgccg atgatctgcc gtggcgcgcc cgccggattg ctcaatggac caagcagatt
      841 aaacgtcgtg tgaattccaa gctgtcggcg aataccggcc acacgcgcag tcgcaccgtg
      901 atagagcggc gcaaacataa aacagatctc gatctcgttg agcgcggtct ccgacaccga
      961 cggaatcgcc gacacattca cacccaacgc ggtcagcaga tcggcactgc ccgacttgct
     1021 gctcgccgca cgattgccgt gcttcgccac gggcaaaccc gcgcccgcaa tcacaaaggc
     1081 cgcggcggtt gagatgttga aagtcttcgc acggctcgaa cccgtgcctg ccgtgtcgat
     1141 aaaacacgag tgacacgaat tgacgcgaac ggcgcgcgaa cgcagtccca tcgccatgcc
     1201 cgtcaactct tcgaccgtct cgcctttcgc cgccagcgca accagcgccg ctgcgatctg
     1261 cgcgtctgtc gcctcagcgt cgagcaacga ctcgagcagt tgcccagcct cgtcgcgact
     1321 cagatcttcg cggcgaacga gacgcgctat aaattcacac aatccgtgtt ggcccattta
     1381 aagcttcaga aaattcgcga gtagttgttt accttccgac gtgaggatcg actcgggatg
     1441 aaactgcacg ccctcaacct tcagttcgcg atgacgcaac cccatgatga cgtcatccgc
     1501 cgtgtgcgcc gaaatctcga gcgatgaagg caacgactct ttctcaacga tcaacgagtg
     1561 ataccttccc gcctgaaaac gatccgtcaa cccttcaaag atcgtcttcc cgtcgtgaat
     1621 cacttccgac gccttgccgt gcatcagctc cggcgctcga atcacacgcc cgccaaacgc
     1681 ctgcccgatc gcctgatgcc cgagacagac accgagcaac ggcacctttc ccgcaaagcg
     1741 ctcgatcact tccaacgaaa cgcccgcggt gtccggcgtg cctggtccag gcgagatcac
     1801 gatccgctcg ggccgcaatt cagactcgat ctcctgcact gtgacgcgat cgtttcgacg
     1861 cacttccacc tgctcgccca actcgcccag atactgcacg aggttgtaag taaacgaatc
     1921 gtagttgtcg atgacgagca gcatcagcgt ttgcctttca aaagctgcac tacaccttcg
     1981 cgcttgttgc gcacggccca ttcagccgcg gtaatcccat cgttgtcctt gagcgtggga
     2041 tcggcgccgc ggctcaacaa caatcgcgcc gcatccacgt tgccgtacac cgcggcccac
     2101 atcaacggcg tgccgcccac cttgttttgc acgttcggat ttgcgccctt gtcgagcaac
     2161 atgcgaacga tctcgacgtt gcctgtttgc ccggcgccat gcaaagccgt atcgccgtcc
     2221 tcatcgagtg cattcacgtc cgcgccgtgg gccagcagct tttcgactcg atccttatta
     2281 tcacgccaca cgtaagccat cagcgccggc ctcccgtttt tcccccgcga attcggattc
     2341 agatcgggac tcgccagcag cgcgtcgacc acgtcttcat acatcgcttc catcgcatga
     2401 ctcatcgccg tgtagccgcg ctggtctttg atgtttggat cgacgccgcg cgacaagagt
     2461 gcgttcacga cctgaacatc gccacgcgcc gccgccgaga tcaaaaccgt gcggccatcg
     2521 ccgtcctgcg cgttcggatt gatgcccgcg tcgaagaacg cgttgatggc cagcatgtcg
     2581 cgcgcctgtg ccgccgcaaa gaaactcttt tcgttgaact cgtaaccacg cagcttgagt
     2641 aactgctgcg ccgcttccgg gcgcggctgc gactgccggt ccgcgttcag gcaaccgctc
     2701 aacgccagaa cacaagcgac gatcacgaat ggcaacgtta ctttttgcat gtggctacag
     2761 tcgcacgatt gatcttcacg ggcttctccg gcttttcagc ctgcaccggc gcctggttga
     2821 tcgcgtctac cacttccatt ccttttgtca ccgtgccgaa cgccgcaaac ttgctgtcga
     2881 gatgcggcga ctcacgaagg agaatgaaga aatgcgttgt cgcgctgttt ggttcgttcg
     2941 tgcgcgccat cgacacgatg ccgcgaacgt gtttgacgag accgggttcg tcgggcaagc
     3001 ggcgcgacat gcgtttggcg agttcaacgc cccatttctc gctcgtctga agatcgccgc
     3061 cctggatcac gaagcccggc acgacgcggc tgaaaatcgt cgtgtc
//
LOCUS       DASWTX010000132         3015 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_370252, whole genome shotgun sequence.
ACCESSION   DASWTX010000132 DASWTX010000000
VERSION     DASWTX010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3015
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370252"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..915
                     /locus_tag="VGD38_02075"
     CDS             <1..915
                     /locus_tag="VGD38_02075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726825.1"
                     /translation="DDANSFTPVYKPLLTAAGQAHPITRLYEDRGQNQKTWNELPPIS
                     VAQALTNVKPGATVLLEARKIDGAGAHIPLLVQQRYGRGQTLALTASDTWRWRMRMDS
                     KNNAHETFWRQMLRYVVSGTPRQTEVSTAKDVYSLDDTINIVADVRDKKFNAAGDAQA
                     TARVTKPSGATVDVPLKFTTLNEANIYTGEFKADELGQHRIELVGQSASFGQLSANAN
                     VLVSDLNREYYSAAQNSDLLKRIAEETGGKYYTPAQTQSLLDDLTYRQTPYSERVTKD
                     LWDMPVNFLLLIALLSAEWFLRKREGLA"
     gene            912..1874
                     /locus_tag="VGD38_02080"
     CDS             912..1874
                     /locus_tag="VGD38_02080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726826.1"
                     /translation="MRYKLTTSLVLVFLFASAVCAQKKAPADPNKYAVIVVGAGGEAA
                     YAKQFEQWTTELSSALSDRFGFDTKKLLVLQNAKAIDVRNTFGQLKSQMDANNVLFVF
                     LIGHGSFDGKESKFNLVGPDLAASEYNTMLSALPTKRVIVFNMASASGEFVKSLSAKG
                     RIIITATKSAQETNATRFAAYFIAALKAPDADTDQDGHTSVLETFVYANRLTADFYTH
                     AGRLATEHALLDDNGDGVGREKAEAGEGLLARATYLDSLSIDEAAATAATGKLMKERT
                     RLEGEIEQLIARKRNLPEAEYEATLERLFIELAKVNRSIKQAGS"
     gene            1875..>3015
                     /locus_tag="VGD38_02085"
     CDS             1875..>3015
                     /locus_tag="VGD38_02085"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0726827.1"
                     /translation="MRTLIFSLVFILALISVPVAAQNTDLKTLIETGRYTEAEAAARK
                     SQSHHELGEVLAITGRYTEAIAEFERAAKDLEKSEIPGERLQSDLRRAELLELLGQED
                     QARAIYASFVKYYNDNDPETALELTLIARALVHLERFQDANDLYRSAIEADSDYLDAH
                     LSAAELFTQKYNYADAAEFLSDALKLNPNSARAYLDLALNKRLEGGEEVNAALTRALT
                     LNPNYVEALSLKAALALESGQFDIASAELDKALKINSRSLEAHSLRAAMYYLQDRDYE
                     PAVAATLAIGPRYGEIYNTLAHYATITRRTEQAAQFSRKAIELNPRLWDAHLDLGMSL
                     LRLGQMEPGRASVERAFKGDPFNVWAKNTLDLLDSMESFRETKRGA"
BASE COUNT          745 a          874 c          847 g          549 t
ORIGIN      
        1 gacgatgcga attctttcac gccggtctac aaaccgttgt tgaccgccgc gggccaggcg
       61 catccgatca cgcgtcttta tgaagatcgc ggacagaacc aaaaaacgtg gaacgagctg
      121 ccgccgatct cggtggcgca agcgttgaca aacgtaaagc ccggcgcgac tgtcctgctc
      181 gaagcgcgca agatcgacgg tgcgggagcg cacattcctt tgctggtgca gcaacggtac
      241 ggtcgcggac agacgttggc cttaacggcg tctgacacct ggcgctggcg catgagaatg
      301 gattcaaaga acaacgcgca cgaaactttt tggcggcaaa tgctgcgtta tgttgtgagc
      361 ggcacgccgc ggcagaccga agtcagcacg gcgaaagacg tctattcgct ggacgacaca
      421 atcaacatcg tcgccgatgt gcgcgataag aagttcaacg ccgccggcga tgcgcaggcg
      481 accgcgcgcg tgaccaagcc ttcgggagca actgttgatg ttcccttgaa atttacgaca
      541 ctgaatgagg ccaatattta cactggcgaa ttcaaggctg acgaactggg ccaacatcga
      601 atcgaactcg tcgggcagag cgcgagtttc ggccagttga gtgcgaatgc aaacgtgttg
      661 gtgagcgatc tgaatcgcga gtattacagc gcggcgcaga acagcgacct gctgaagcgg
      721 atcgcggagg agacgggcgg caagtattac acgcccgcgc aaacacagtc gctgctggac
      781 gatctgacct accggcaaac gccgtattca gaacgcgtga cgaaagactt gtgggacatg
      841 ccggtgaatt tccttttgct gattgcgttg ttgagtgctg agtggttctt aagaaaacga
      901 gaaggcttgg cgtgagatac aaattaacaa cgagtctggt gctggtgttt ctgtttgcgt
      961 cagcggtgtg cgcgcaaaag aaggctcctg ctgatccgaa taagtatgcc gtgatcgtcg
     1021 tgggtgcggg cggcgaagcc gcgtacgcaa aacagttcga gcagtggacc acggaactga
     1081 gttccgcgtt gtcggatcgt ttcgggtttg acactaagaa actgctggtg ctgcaaaacg
     1141 cgaaggccat tgacgtaaga aacacgtttg gccaactgaa gtcgcagatg gacgcgaaca
     1201 acgtcctgtt cgtgtttctg atcggtcacg gctcgttcga cggcaaggag tcgaagttca
     1261 atctcgttgg gccagatctc gcggcgtcgg agtacaacac gatgttgtca gcgctgccga
     1321 caaaacgcgt gatcgttttc aacatggcga gtgcgagcgg cgagttcgtc aagagccttt
     1381 cggccaaagg acgaatcatc atcaccgcga ccaagagcgc acaggaaacg aacgcgacgc
     1441 gtttcgcggc ttacttcatc gcggcgctca aagcccccga cgcggatacg gatcaggacg
     1501 gacacacatc ggtactcgaa acgtttgtct atgcgaatcg attgaccgcg gatttctaca
     1561 cgcacgccgg acgcctcgcg accgaacacg cgttgctgga tgacaacggc gacggcgtag
     1621 gacgtgaaaa agcagaagcg ggcgaaggcc tactcgcgcg cgcgacctat ctcgactcct
     1681 tgagtatcga cgaagccgcc gcaaccgccg caaccggcaa actaatgaaa gagcgcaccc
     1741 gtctcgaagg cgagatcgaa caactgatcg cacgcaaacg aaacctcccc gaggcggaat
     1801 acgaagcaac gctcgaaaga ctttttattg aactggcaaa agtgaatcgt tcgatcaaac
     1861 aagcaggatc gtaaatgcgc acactgatat tcagtctggt tttcattctg gctttgatct
     1921 ctgttcctgt ggccgcacag aacacggatc ttaaaacgct gatcgaaacc ggacgctaca
     1981 ctgaagcaga agcagccgct cgaaagtcac agtcgcacca tgaactcggc gaagtgctcg
     2041 cgattacggg gcgttacacc gaggcgatcg ctgagttcga acgcgcggca aaagatctgg
     2101 aaaagtcaga gattccgggt gaacgtttgc aaagcgatct gcgccgcgcc gaactactcg
     2161 agctactcgg ccaggaagat caggcgcgcg caatctacgc ctcgttcgtc aagtactaca
     2221 acgacaacga tcccgaaact gcactcgaac taacactcat cgcccgcgcg ctggtccacc
     2281 tggaaagatt ccaggacgcc aacgacctgt atcgctccgc tatcgaagcg gattccgatt
     2341 acctcgacgc gcacctctcc gccgctgaac tgttcacaca aaagtacaac tacgccgacg
     2401 ccgcggagtt tctcagcgac gcactaaaac tgaacccaaa cagcgcccgc gcttatctcg
     2461 atctcgcgct aaacaaacgt ctcgaaggcg gcgaggaagt caacgccgcg ctcacccgcg
     2521 cgctaacgct caatccgaac tacgtcgaag cgctctcgct caaagcagca ctcgcgctcg
     2581 agtcaggcca gttcgacatc gcctcagccg agctcgataa ggcattgaag atcaactcgc
     2641 gttccctcga agcacactcg cttcgcgcgg ccatgtacta cctgcaggac cgtgactacg
     2701 aaccggcagt cgcagcaaca ctcgcgatcg gcccgcgtta cggcgagatc tacaacacgc
     2761 tcgcccacta cgccacgatc acgcgccgca ccgaacaagc cgcgcaattc tcgcgcaaag
     2821 caatcgaact aaacccgcgt ttgtgggacg cacatctgga cctcggcatg tcgttgctgc
     2881 gcctgggcca gatggaaccg ggccgcgcgt cagtcgaacg agcgttcaaa ggcgatccgt
     2941 tcaacgtgtg ggccaagaac acactcgacc tgctcgactc gatggagtct ttccgcgaaa
     3001 ccaaacgcgg cgcct
//
LOCUS       DASWTX010000133         4517 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_45295, whole genome shotgun sequence.
ACCESSION   DASWTX010000133 DASWTX010000000
VERSION     DASWTX010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4517
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45295"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(88..3411)
                     /locus_tag="VGD38_02090"
     CDS             complement(88..3411)
                     /locus_tag="VGD38_02090"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0726828.1"
                     /translation="MFKLTRLTLGVLFVLVCSLAVFAQGGTGQLSGTVVDANDAVVPG
                     ATVKLTSLATSQVRETVTGDSGDYVFTLLPAGEYKLEVTANGFRTVIVDNLRINVTQT
                     TTLPVRLDAATVSGMVTVNAEPPLVQQETSQVGRTIEEQTIRQLPLPTRNFQQLLTLS
                     PGTSASVSNNTELGRGDSIITVNGQRTTSNNVRINGIDANSAGTNSTPNIAVPATDTL
                     QEFIVQTSLYDASQGRNAGGNVEAVTKSGANDFHGNAYYFFRNRALNSNDFFLEQSGR
                     PTPVLSRHQFGGTLGGPIIRDRLFFFGSYQGTRETNGASLNNSLMFPFMPAQLSDNNR
                     TAAALQATFAVAPNPIAVNLLNLRLPNGQFAIPSAATASGLTPISGISTFRENQFNAN
                     FDLRLSDKHTLAFKNFFASNPTFQANYNFAGLGNGVNQLPGTGGSLDIIQELNSITDT
                     YVFTPNIVNQARFGFSRLRVTSTPEEPFTAAELGINNPLKNLFPGMPTLTVTGLFTFG
                     SSPFADQSSRINAFTYGDTLSIVAGDHRLRLGGEYRRSQVNFYFNAFSRGQIIFSSFN
                     NFLIGNGVSILGSGVFDRALRVNDWSGFVQDDWKINNRLTLNLGLRYDFYGYPKDTRG
                     RLVNFLPAQFRQGTTASPAGPPNGFVQAAGGGLAGVPEVDETLVPSDKNNFAPRVGFA
                     YRLNDAGTLVARGGYGIYYDKFSTRYANTQLLNYPYLTLAVGLPGVLRTFADPFIPLP
                     QPGAFPVNPTIPSPLSPLSPIVGVPISGIFIDPELRTPYIQQYNANIQWEAFKDYLLE
                     VGYVGSKGTKLLQVVTLNQPVYNRAANVFVAPLGTALSTQKNVAGGIQQVQTSSNSRY
                     DSLQISMTKRFSRGLQFLSAYTLSKSQDYYSGGTINELFAVPGDQSNWKLNYGPSDYD
                     RRHRFVTSFVYDLPKTDSQSFAARYFVNDWQINGILTLQTGTPFSIIDAPNNNIIQRA
                     NFASGGGSILTTGSIESRLNGFFNSSAFVLSRPILAGGNLGVPNNPNFDPNNPFGNTP
                     RNFLYGPGQKNMDFSVVKFIPIHEALRGEFRAEFFNLFNWTNFANPNNNIAVPSTFGR
                     ITATSSGPRVIQFAFKLNF"
     gene            complement(3601..4233)
                     /locus_tag="VGD38_02095"
     CDS             complement(3601..4233)
                     /locus_tag="VGD38_02095"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEY0726829.1"
                     /translation="MPKLTPSAMEKKKSRIEEAARELFISHGFHATSMRTIAARAGTS
                     LGNVYNYYRTKEEILESIIGRYQTVIDGRLRAIFDDIDEPLEPESLVKFGKQIKEMVN
                     AHHDFWLLMYIDVLEFENRHFRKMFEGLVHNLRRRFATQFNELKKQGRVHADVDPAVG
                     FTAVYMQFFNYFLVEKLFGGNRHFGISDERVIKQLTDIYCRGLLCNNSKN"
BASE COUNT          964 a         1218 c         1381 g          954 t
ORIGIN      
        1 ctcgtccccg gtcggagccg aagcactagc gcggagtcga agcaccggcg gcgatccgca
       61 acgaagttgt ccgcaaagct gtcaacgcta aaaattcagc ttgaacgcaa actggatcac
      121 gcgcggaccg gaactcgtcg ccgtgatgcg gccaaaggtc gaggggacgg cgatgttgtt
      181 gttcgggttc gcgaagttgg tccagttgaa caggttgaag aactcagcgc gaaactcgcc
      241 gcgcaaggct tcgtgaatcg ggatgaactt caccaccgag aaatccatgt tcttctgacc
      301 cggcccgtaa aggaagttgc gcggcgtgtt gccaaacggg ttgttcggat cgaagttcgg
      361 attgttcggg acgccgaggt ttcccccggc gagtatcggc cgcgagagca caaacgccga
      421 cgagttgaag aatccattca agcgcgactc gatgctgccc gtcgtcagga tcgatccacc
      481 gcccgacgcg aagttcgcgc gctgaatgat gttgttgttc ggcgcgtcga tgatcgaaaa
      541 cggcgttccg gtttgcagcg tcaggatacc gttgatctgc caatcgttca cgaagtaccg
      601 agcggcaaag gattgcgaat cagtcttcgg caagtcgtaa acaaaactgg tgacaaagcg
      661 atggcgccgg tcgtaatccg atggtccata gttgagtttc cagtttgact gatcgcccgg
      721 aaccgcaaac aactcgttga tcgtgccgcc ggaatagtaa tcctgcgact tgctcaacgt
      781 gtaggcgctg agaaactgca agccgcggct gaaccgcttc gtcatgctga tctgcaacga
      841 gtcgtagcgc gagttggagc tcgtctgcac ctgctgaata ccacccgcaa cgttcttttg
      901 cgtcgacaac gctgtgccca gcggcgcgac aaagacgttt gccgcacggt tgtaaaccgg
      961 ctggttgagc gtcacgactt gcaacagctt cgtgcctttc gaaccgacgt aaccaacctc
     1021 gagcaggtaa tctttgaacg cttcccactg aatgttcgcg ttgtattgct ggatgtacgg
     1081 cgtgcgcaac tcgggatcga tgaagatgcc gctgatcggc acgccgacga tcggcgacaa
     1141 cggcgagagc ggcgacggaa tcgtcgggtt caccggaaac gcgcccggct gcggcaacgg
     1201 aatgaacgga tccgcgaatg tgcgcaacac tcccggcaaa ccaaccgcga gcgtgagata
     1261 cggatagttc aacaactgcg tgttcgcata acgcgtcgag aacttgtcgt agtaaatgcc
     1321 gtaaccgccg cgcgcgacga gcgtgcccgc atcgttcaag cgatacgcga aaccaacacg
     1381 cggcgcgaag ttgttcttgt ctgacggcac gagcgtctca tcgacttcag gcacaccggc
     1441 gagaccaccg cccgcagcct gcacaaatcc gtttggtgga ccagcaggcg acgccgtcgt
     1501 tccctggcga aattgagcgg gcaggaaatt cacaagccgg ccgcgcgtgt ctttcggata
     1561 gccgtagaag tcgtaacgca gcccgagatt gagcgtgagc cggttgttga tcttccaatc
     1621 gtcctgtacg aagccgctcc aatcgttgac ccgcagcgcg cgatcgaaaa cgcccgaacc
     1681 gagaattgaa acaccgttgc cgatcaggaa gttgttgaag ctggaaaaga tgatctgccc
     1741 gcgcgagaac gcgttgaagt agaagttgac ttgcgaacgg cggtattcgc cgccgagacg
     1801 gagtcgatga tcgcccgcga cgatcgaaag cgtgtcaccg taagtgaacg cgttgatgcg
     1861 cgacgactga tccgcgaaag gcgacgaacc aaacgtgaac aagcccgtga cggtcaacgt
     1921 cggcatgccc gggaacaggt tcttcaacgg gttgttgatg ccgagctccg ctgcggtgaa
     1981 tggctcttcg ggtgttgacg tgacgcgcaa gcggctgaaa ccgaagcgcg cctggttcac
     2041 gatattcggc gtgaacacgt acgtgtcggt gatcgagttg agctcctgaa tgatgtcgag
     2101 cgagccgccc gtgccgggca actggtttac gccgttgccg agtccggcga agttgtagtt
     2161 cgcctgaaac gtcggattgc tcgcgaagaa gttcttgaac gcgagcgtgt gcttgtcgga
     2221 tagacggaga tcgaagttgg cgttgaactg gttctcacga aaagtcgaga tgccggagat
     2281 cggagtcaaa cccgaagccg tcgcggctga agggatcgca aactggccgt tcgggagccg
     2341 cagatttaga agattgaccg cgatcggatt cggcgccacg gcgaacgtcg cttgcaacgc
     2401 cgccgcggtg cggttgttgt cgcttaactg cgccggcatg aacggaaaca tcagactgtt
     2461 attcaacgac gcgccgtttg tttcgcgcgt gccctggtac gaaccgaaga agaacagacg
     2521 atcgcggatg atcggtccgc cgagtgtgcc gccgaactgg tgccgcgaga gcacgggcgt
     2581 cggccggcct gactgttcga gaaagaaatc gtttgagttg agcgcgcggt tgcggaagaa
     2641 gtagtaggcg ttgccgtgaa aatcgttggc gcctgacttc gtgacggctt cgacgttgcc
     2701 gcccgcgttt cgtccctgcg aagcatcgta caggctcgtt tgcacgatga actcctgcag
     2761 cgtgtcggtc gcaggcacgg cgatgtttgg cgttgagttt gtgccggcgg agtttgcgtc
     2821 gataccattg atgcgtacgt tgttgctggt tgtgcgctgc ccgttcacgg tgatgatcga
     2881 atcaccacgg ccgagctccg tgttgtttga aacgctcgcc gaagtgccgg gcgagagcgt
     2941 caacaactgt tggaagtttc gcgtcggcag cggcaactgg cggatcgttt gctcctcgat
     3001 cgtgcgtccg acctgcgagg tctcctgttg gaccaacggc ggttcggcgt tgactgtaac
     3061 catgccggaa accgtcgccg cgtcgagacg aacgggcaag gtcgtcgttt gcgtgacgtt
     3121 gatacgcagg ttgtcgacga tgacggtgcg aaagccgttg gcggtgacct cgagcttgta
     3181 ttcgcctgcc ggcagaagtg tgaaaacgta gtcgccggaa tcgccggtca ccgtctcgcg
     3241 cacctgtgag gttgcgaggc tggtgagttt cacggtcgcg ccgggaacga cggcgtcgtt
     3301 agcgtcgacg acggtgccgc tgagttgtcc ggtgcctccc tgagcgaaga cggcgagtga
     3361 gcaaacgaga acaaagagca cgccgagcgt caatcgagtc aacttaaaca tcttccaacc
     3421 tcctgcagtt gttcggagtt caagctttag cttgccgcgc gtaagagcag cctgaaggct
     3481 gaactcagaa cgggttttct gtaatcgcgt ccatctggtt agttccaatg ccagataaac
     3541 acgaacgttc gtttttcttg cgagccggag taagccgttt tcgaagcgtt aagctacggg
     3601 ttaattcttg ctgttattgc ataacaggcc gcggcaatag atatcagtta gttgtttgat
     3661 gacgcgctcg tcgctgatgc cgaagtggcg attgccgccg aacagtttct cgaccaggaa
     3721 gtagttgaaa aactgcatat acactgccgt gaagccaacg gccggatcga cgtcggcgtg
     3781 aacgcgtccc tgctttttca gttcattgaa ctgcgtcgcg aagcggcggc gcaggttatg
     3841 aacgagacct tcaaacatct tgcggaagtg ccggttttca aactccagca cgtcgatgta
     3901 catcagcaac cagaagtcgt gatgcgcgtt gaccatctcc ttgatctgtt tgccgaactt
     3961 cacgagcgac tctggttcga gcggctcgtc gatgtcgtcg aagatggcgc gcagccggcc
     4021 gtcgatcacg gtttgatagc ggccgataat ggattcaagg atctcttctt tagtgcggta
     4081 atagttatag acattgccga gcgaagtgcc cgcgcgcgcg gcgatagtgc gcatggaagt
     4141 cgcgtgaaac ccgtgcgaga tgaagagttc gcgggccgct tcttcgatgc ggctcttctt
     4201 cttttccatc gcgctgggag tcagcttggg cattcataca aaaacgaacg ctcgtatttt
     4261 atgcagaatt gaggcgctgt caaccttttc gcgtataacg ccgaaggcgt tcgcgagttc
     4321 cagcccggac gttaaaggcg ttcccgagtt ccagcccaac gccgaaggcg ttcgccaatt
     4381 tcagcccatc tatgaagcgg tctccggtgt caagagaatt ttaggcacac gctgaccgcg
     4441 acgccgcggc gcctgcgttt gctctattga taaagctttg ctctgtgaca tgagactgcg
     4501 aagtaaattt accgccg
//
LOCUS       DASWTX010000134         2657 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_283545, whole genome shotgun sequence.
ACCESSION   DASWTX010000134 DASWTX010000000
VERSION     DASWTX010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2657
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283545"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..750)
                     /locus_tag="VGD38_02100"
     CDS             complement(<1..750)
                     /locus_tag="VGD38_02100"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0726830.1"
                     /translation="MRHRITLALFVSFCTFLPVAPLAAQTKPAGEQDDVVRITTNLVQ
                     VDAVVTKDGKPVRDLKAEDFEIYQDGKKQTITTFAYISNVSPDSSSPADKSSVTVPGG
                     PIKRDVARRTIAIVIDDLALSFESIHHIRRQLRKFIAEELQPNDLVAVIRTGGEMGAL
                     QQFTNDKRLLNRAVEQIRWNLCSRVGISPLPRIGDTGVGACDFLGSAGTMNSLRFILD
                     SMGRLPGRKSMILMSDAIPVREDQAIVGGDES"
     gene            844..1215
                     /locus_tag="VGD38_02105"
     CDS             844..1215
                     /locus_tag="VGD38_02105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726831.1"
                     /translation="MSRTLLLVFCLVIGLLVLACGGPTNKNGAPTNSSGSSTAANTVP
                     SGEQIGVPECDSFLNAYESCVSTKVPEAQRAQFQTIMTNWRAEWKRLAGDPQTKAGLI
                     AACKNHMEIARTQMKAYNCTF"
     gene            complement(1219..1794)
                     /locus_tag="VGD38_02110"
     CDS             complement(1219..1794)
                     /locus_tag="VGD38_02110"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEY0726832.1"
                     /translation="MSELFLPILLGTNRKLRKSHLAAQWLLGEMKKRPEIETRLFDTA
                     EFALPHDDYGQEIKDSFPEWRDAIVRADGLVIVTPEYNHGYPGALKSVLDLLLREYVH
                     KAVAFVGVSAGPWGGTRVIEAMVPMVRELGLAVCFTDLNFPKVQSTFDEQGKLLNPLY
                     EKFVSDFLDELVWMSRVLKWGRANVPSKFHT"
     gene            complement(1791..>2657)
                     /locus_tag="VGD38_02115"
     CDS             complement(1791..>2657)
                     /locus_tag="VGD38_02115"
                     /inference="COORDINATES: protein motif:HMM:NF019307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase dimerization domain-containing
                     protein"
                     /protein_id="HEY0726833.1"
                     /translation="GKKQVVFGARGDVNVDVTVYAAKRPLHSGHYGNWSPNPAMMLAR
                     LLSSMKDADGRVLVDGWYSDVEPLGERERRAIAEAPQYDEEIKKQLGLSRTEGAGKSL
                     MELINVPSLNINGFASGDVGDLARNVIPTTATAVLDLRLVKGNDHRRQVERLIAHVRK
                     QGYFVTDKAPTDAERAQHPLIARINVRAGGYNAERTSMDLSVSLAVIEAVQSTTPDKI
                     VLLPTSGGSLPLSIITENLKTVTISVPIANYDNNQHAENENVRLQNLWNGIETFAALM
                     TMNAKEPQGTQR"
BASE COUNT          540 a          730 c          771 g          616 t
ORIGIN      
        1 agactcgtca ccgcccacga tcgcctggtc ctctctaaca ggaatggcgt cagacatgag
       61 gatcatcgac ttgcgcccgg gcaaccggcc catcgagtcg agaatgaaac gcagcgagtt
      121 catcgttcct gccgaaccca gaaaatcgca agcgccaaca cctgtgtctc cgatacgcgg
      181 gagaggcgat attcctacgc ggctgcaaag gttccagcgt atttgttcga cagcgcggtt
      241 tagcaggcgc ttgtcgttag tgaactgttg cagcgcaccc atttcgccgc cggtgcgaat
      301 cacggcgacg agatcgtttg gctgcaattc ctcggcgata aactttcgta actggcgccg
      361 tatgtgatga atgctttcga acgagagggc caaatcgtcg atcacaatgg cgattgtgcg
      421 gcgtgcaacg tcacgtttta ttggaccacc aggaacggtg acgctgctct tatcggcagg
      481 ggacgacgaa tcgggggaca cgttcgaaat gtaagcgaag gtggttatcg tctgtttttt
      541 cccgtcctgg tagatctcga aatcttcagc cttcagatcg cgcacgggtt taccgtcttt
      601 cgtcacgacg gcatcgacct ggacgaggtt ggtggtgatt ctgactacgt cgtcctgctc
      661 tccggcaggc ttggtctggg ccgcgagtgg ggcgacgggc agaaaggtac agaacgacac
      721 gaacagtgcg agggtaattc tgtgtctcat cggggtagtc tcctaaactt tcgtgttagg
      781 ggagagaggt tatttgtggt gtattatctc cggctctgtc attttggatc aaggagaata
      841 aaaatgtcga gaactctcct cctggtgttc tgtctcgtga ttggtcttct ggtcctggcg
      901 tgtggtggtc caacgaacaa aaatggcgcg ccgactaaca gttccggctc cagtacggcg
      961 gccaatacag ttccgagtgg tgagcagatc ggcgttccgg agtgtgacag tttcctgaat
     1021 gcttacgaaa gctgcgtctc aaccaaagtg cccgaagcac aacgtgcgca gttccaaacc
     1081 atcatgacca actggcgcgc cgaatggaaa cggctggccg gcgacccgca aacgaaagcc
     1141 gggctgatcg ctgcgtgcaa gaatcacatg gaaatcgcac gcacgcagat gaaggcttac
     1201 aactgcacgt tctgaatctc aggtgtgaaa cttggagggg acgtttgcgc gtccccactt
     1261 gagtacacgg ctcatccaga ccagttcgtc gagaaaatcc gacacgaact tctcatacaa
     1321 cggattgagc agcttgccct gctcgtcgaa ggtgctctgt acctttggaa aattcaggtc
     1381 agtgaaacaa accgcgaggc cgagttcgcg caccatcggg accatcgctt cgatcacgcg
     1441 cgtgccgccc cacggtcccg ccgacacacc gacgaaagcc acggccttgt gaacgtattc
     1501 tctgagcaat agatcgagca cgctcttcaa cgctcccgga taaccgtggt tgtactctgg
     1561 cgtgacgatc acgaggccgt ccgcgcgaac gatcgcatcc ctccattccg gaaaactatc
     1621 ttttatctcc tggccgtaat cgtcgtgagg caaagcaaac tccgcggtgt cgaagaggcg
     1681 cgtctctatc tcgggccgct tcttcatctc gccgagtaac cactgcgcgg cgagatggct
     1741 ctttctgagt ttgcgattgg tgccgagtag gatcgggaga aacagttcgc tcatcgttgt
     1801 gttccttgtg gctctttggc gttcatggtc atcaacgcgg cgaacgtctc gatgccgttc
     1861 cacaggtttt gcagacggac gttttcgttc tccgcgtgtt gattgttgtc gtagtttgcg
     1921 atgggcaccg agatcgttac ggttttgagg ttctcggtga tgattgaaag cggcaggctg
     1981 ccgccggaag tcggcagtaa aacgatcttg tcaggcgtgg ttgattgcac tgcttcgatc
     2041 acggcgagcg atacggacaa gtccatgctc gtgcgttcgg cgttgtaacc gcctgcgcgg
     2101 acgttgatgc gcgcgatcag tggatgttga gcgcgttcgg cgtctgttgg cgctttgtcc
     2161 gtgacgaagt aaccctgctt gcgaacgtgc gcgatcaagc gttcgacctg gcgacggtga
     2221 tcgttacctt ttacgagacg aaggtccaac acggctgttg ccgtcgtagg gattacgttg
     2281 cgcgcgaggt cgccgacgtc gccactcgcg aaaccgttga tgttcagcga gggaacgttg
     2341 atcagttcca tcagcgattt gccggcgcct tccgtacggc tcaggcccaa ctgttttttg
     2401 atctcttcgt cgtattgcgg cgcttcggcg attgcgcgtc gctcgcgttc acctaacggt
     2461 tcgacgtctg aataccaacc gtccacgagc acgcgaccgt cggcgtcttt catcgacgac
     2521 agcagtcgtg cgagcatcat cgcgggattc ggcgaccagt tgccgtagtg accgctgtgc
     2581 agcggacgct tcgcggcata aacggtaacg tcgacattca catcgccgcg cgcgccaaac
     2641 acgacctgct ttttgcc
//
LOCUS       DASWTX010000135         3865 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_110380, whole genome shotgun sequence.
ACCESSION   DASWTX010000135 DASWTX010000000
VERSION     DASWTX010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3865
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110380"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..621
                     /locus_tag="VGD38_02120"
     CDS             <1..621
                     /locus_tag="VGD38_02120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726834.1"
                     /translation="NQRNFLKLTLPPTAQLWSASVAGRPIRPGRAPDGSLLLPLEKSR
                     AGGDAPPFIVEVSYLDRAAPWADRGRARVALVSVDLPISKSHLLLHHPPLFRVTPAPG
                     LSGSFRVATYAPPASSSLSATQSVSSNEQQQAEGEISSDKAEIKQLVAQVRANKQSAR
                     PTRNLPLRVVFPHFGPSIFLVSELTGENQAPAVEFDFQRDRKRGDR"
     gene            618..2843
                     /locus_tag="VGD38_02125"
     CDS             618..2843
                     /locus_tag="VGD38_02125"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0726835.1"
                     /translation="MKPVILILLLTVTAFGQHRNSTAEMPLPTAAAAGTVTLSLAEYN
                     RLVEMSTRKPKPLDAPPLPFVLTRAVFKLRVENQTLMGTVSIDGTSLDKGPVKAPLTT
                     GLLVLQADQSGNPLPLLLEGSNHAAILNGPGPFAVSLGVASALTIDAGRATFMLPVPL
                     AGSSMLSLELPGNHANVNVEPGIITKRTTVNGHTVIEASLEPGKAARVWWTTREVAAP
                     VAQREVRFLSDIKSVVSVGDSQLRLTALCDVNVIQGEAPEFKLPIPDGYELTAASGSS
                     LESSQLSSGVLTLRVHDPAKRNHQFLIAIERSNREPKVEPPLFAFEGAQRETGELLVE
                     GIGAMELKAKESGGLRRMDVREANAITRSLSHFPLQAAFRYNRRAAEAPKLELEWQQF
                     SDADVLSAVAERATVTTLTNVEGRSLTEVTLRIRNHAQPFVKVELPPGSQLVTAEVAG
                     QPVKPVEGADGSRVPLLRAGLNASGAYTVSFVYLSTGTRFGKTGSYDMGLPRLDVPIN
                     LLTWEVSLPEKLEVKQFGGNALSAEVFPAAAQNSLSEDDDLAEVDNRMWTRNDLSVLE
                     PGEIGGIVADPVGAIVTGAAVTVHTQSGMTFNTSTDSEGRWVIAGLAPGPVKVRIESP
                     GFKPLQQEFHYNASRPVRMGSTLEVANVSETVTVTDMSIDGLERENRRIEEMVRKNSG
                     DSAGRGATAPSQNVFNLQRRVAGILPVRIEVPRSGRSYRFVRPLVLGEETKITFQYKS
                     K"
     gene            complement(2881..3522)
                     /locus_tag="VGD38_02130"
     CDS             complement(2881..3522)
                     /locus_tag="VGD38_02130"
                     /inference="COORDINATES: protein motif:HMM:TIGR01065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HEY0726836.1"
                     /translation="MSDSIPTLSAGEESANSISHGLGLILAIVALPILVDSAMRKGST
                     HFMVGASVFGVTMVLLYLASTLYHAIAHEQTKRLCRLFDHSAIFLLIAGSYTPFTLGV
                     LRGVWGWTLLAIVWTLAITGIIVKAIPRTRHSWISMVLYLVMGWLALIAIKPIWELVP
                     VPGILLILAGGVAYTGGLAFFAARRLRYSHFIWHLFVIAGTTFHFFAVLWYAA"
     gene            complement(3566..>3865)
                     /locus_tag="VGD38_02135"
     CDS             complement(3566..>3865)
                     /locus_tag="VGD38_02135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726837.1"
                     /translation="SNTTGEAPSIFGEIFTLANNPGEYEFKLLWNNKLARSIKFTVQP
                     GGKFDNGIAKANNLGSDIVIVPVQIIGDQDGMWNKTAWKTDAFYGNPLTGFTALP"
BASE COUNT          804 a         1115 c         1187 g          759 t
ORIGIN      
        1 aaccagcgaa actttttgaa actgacgctg ccgccgacgg cgcagttgtg gagcgcttcg
       61 gtggccgggc gtccgattcg accgggacgc gcgccggacg gctcgctctt gttaccactc
      121 gagaaatcac gagccggcgg cgatgcgcct ccgttcatcg tcgaggtttc gtatctcgat
      181 cgtgccgcgc cgtgggccga tcgcggacgc gcgcgcgttg cgctcgtgtc agtcgatttg
      241 ccgatctcga aatcacatct actgcttcat cacccgccac tctttcgcgt gacgccagcg
      301 ccgggcttgt ccggaagttt tcgcgtcgcg acttacgcgc cgcccgcgtc gtcatcgcta
      361 agcgcgacgc agtctgtttc ttcaaacgaa caacagcaag ccgaaggcga aatctcgtca
      421 gacaaagccg agatcaaaca actggtggcc caggtccgcg cgaacaaaca gagtgcacgg
      481 cccacgcgca acctgccgtt acgcgtcgtg ttcccgcact ttggtccttc gatctttttg
      541 gtatcggagc tgaccggcga gaaccaggcg cccgccgtag agtttgattt tcaacgtgac
      601 agaaagagag gcgaccgatg aaaccagtga ttctgatctt acttctgacc gtgacagctt
      661 tcggtcagca ccgaaactca accgccgaga tgccgctgcc caccgcagcc gccgcaggca
      721 cggtgacgct ctcgctcgcc gaatacaacc gtctcgttga gatgtcgacg cgcaaaccaa
      781 aaccgctcga cgcgccgccg ctgccgtttg tgttgacgcg cgctgtcttc aaactacgcg
      841 tcgaaaacca aacgctgatg ggcactgtca gcatcgacgg cacgtcgctg gacaaaggac
      901 cggtgaaagc gccgctcacg actggcctgc tcgtgctgca agccgatcaa tccggcaatc
      961 cgttgccgct gctgctcgaa ggatcgaacc acgcggcgat cctgaatgga ccgggtccgt
     1021 ttgccgtgtc gctcggcgtc gcgtcggcat tgacgatcga tgccggacgc gcaacgttca
     1081 tgttgccggt gccgctggcc gggagctcga tgttgagttt ggaattgccc ggcaatcacg
     1141 cgaatgtgaa cgtcgaaccg ggaatcatca ccaagcgcac cactgtcaac ggccacaccg
     1201 tgatcgaggc gtcactcgag cccggtaaag ccgcgcgcgt ctggtggacc acgcgggaag
     1261 tcgccgcgcc cgttgcgcaa cgtgaagttc gttttctttc cgacatcaag agcgtcgttt
     1321 ccgtcggcga ttcgcaactg cgtctcaccg cgttgtgcga cgtcaacgtg atccagggcg
     1381 aagcgcccga gttcaaactg ccgattccag acgggtacga actgaccgca gcgtcgggta
     1441 gttcgctcga atcgagtcaa ctgtcttccg gtgtgttgac gctgcgcgtt cacgatcccg
     1501 cgaaacgcaa tcaccagttt ctgatcgcga tcgaacgcag caatcgcgaa ccgaaagtcg
     1561 agccgccgct gtttgccttc gaaggcgcgc aacgcgagac cggcgaactg ctggttgaag
     1621 gtatcggcgc gatggaattg aaggcgaagg agtcgggtgg cttgcgtcgc atggacgtgc
     1681 gcgaagcaaa cgcgatcacg agatcgctgt cgcattttcc gttgcaagcc gcgtttcgtt
     1741 acaaccgccg tgcggctgag gcgccgaagc tggagctcga gtggcaacag ttttccgacg
     1801 cagatgtgct ttcggccgtg gctgaacgcg cgactgtgac gacgttgacg aacgtcgaag
     1861 gccgctcgtt gactgaagtg acgctgcgta ttcgcaatca cgcgcagccg ttcgtgaaag
     1921 tcgaactgcc gccgggttcg caactcgtta ccgccgaagt cgcgggtcag ccagtgaagc
     1981 cggtggaagg tgctgacggc agccgcgtgc cgctgttgcg cgcgggtttg aatgcgtcgg
     2041 gcgcgtacac cgtctcgttt gtttacttga gcacgggcac aaggtttggc aagaccggtt
     2101 cgtacgacat gggcctgccg cgtctcgatg tgccgatcaa tttgttgacg tgggaagttt
     2161 cgctgcccga aaagttggaa gtgaaacagt ttggcggcaa tgcactgtcg gcggaagtgt
     2221 ttccggcggc ggcgcaaaat tctctgtctg aggatgatga tctagcagaa gtcgataacc
     2281 ggatgtggac gcgtaacgat ctgagcgtgt tggaaccggg agagatcggc ggcatcgtcg
     2341 ctgatccggt aggtgcgatt gtgaccggtg cggcagtgac cgtgcacaca caatcgggaa
     2401 tgactttcaa cacgagcaca gacagcgagg gacgctgggt gatagccggt ttggcgcctg
     2461 gaccagtgaa ggtgaggatt gagtctccgg gtttcaaacc gctccaacag gaatttcatt
     2521 acaacgcttc tcggccggtg cgaatgggaa gcacgcttga agtcgcgaac gtctccgaaa
     2581 cggtgaccgt caccgacatg agcatcgacg gcctggagcg tgagaatcgc cgcatcgagg
     2641 agatggtgcg caagaactcc ggagatagcg caggaagagg tgcgaccgcg ccgtcgcaga
     2701 acgtgttcaa tctgcagcgc cgcgttgcgg gaattcttcc ggtgcgcatc gaagttccgc
     2761 gcagcggcag atcctatcgc ttcgttcgcc cgctcgtgct cggcgaggag acgaagatca
     2821 catttcagta caagtcgaag taaattggtt ttaagaattg aggcttttaa atccctgttc
     2881 ctatgccgcg taccagagga ctgcgaagaa gtgaaaggtc gtaccggcga tcacgaacag
     2941 gtgccagatg aaatgactat agcgcaggcg gcgagcggcg aagaacgcga gcccacccgt
     3001 gtacgccacg ccgcccgcta agatcagaag aatgccgggc acagggacca gttcccagat
     3061 cggcttgatc gcgatgagcg cgagccagcc catcacaagg tagaggacca tcgagatcca
     3121 cgagtgacgt gtgcgcggga ttgccttgac aatgatgccc gtgatcgcca gcgtccagac
     3181 gatcgccagc agcgtccaac cccacacacc gcgcaacacg ccgagcgtga acggtgtgta
     3241 agatcccgcg atgagcagaa agatcgcgct atgatcgaag agacggcaga gacgtttggt
     3301 ctgttcgtgt gcgatcgcgt gatagagagt tgaggcgaga tagagcaaaa ccatcgtcac
     3361 gccaaacacc gacgcgccca ccataaaatg cgtgctgcct ttacgcatcg cagaatcgac
     3421 gagtatcggc agcgcgacga tcgccaagat caggccaaga ccatgactga tgctgttcgc
     3481 actctcttcg ccggcggaga gggtggggat tgaatcactc atgccgccgc attttacacc
     3541 caatcggctc gcggtccata ggtctttacg gcaacgcggt gaagcccgtc agcgggttgc
     3601 cgtagaacgc gtcagttttc cacgccgtct tgttccacat gccgtcctgg tcgccgatga
     3661 tctggaccgg cacgatgacg atatcggagc cgaggttgtt ggctttggcg ataccgttgt
     3721 cgaacttacc gccgggttgc accgtgaact tgatcgagcg cgcgagcttg ttgttccaca
     3781 acagtttgaa ctcgtattcg cccgggttgt tggcgagggt gaagatctcg ccgaagatgc
     3841 tcggagcttc gcccgtcgtg ttgct
//
LOCUS       DASWTX010000136         1952 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_196349, whole genome shotgun sequence.
ACCESSION   DASWTX010000136 DASWTX010000000
VERSION     DASWTX010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1952
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196349"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..475)
                     /locus_tag="VGD38_02140"
     CDS             complement(<1..475)
                     /locus_tag="VGD38_02140"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0726838.1"
                     /translation="MSTSAISSNGASPIIVAHGLKHTYGKSKKRQFEALHGIDLTVRQ
                     GEILGLVGPDGAGKSTLLKALSGLIHPNEGTVTLAGEAPAKVRERIGYVSQAGGVDPD
                     LTVTENLSYVAGLHSIASGTAEARAAELLKRLQLEPVSDRLVTSIGGGRRRMLTLA"
     gene            complement(483..1649)
                     /locus_tag="VGD38_02145"
     CDS             complement(483..1649)
                     /locus_tag="VGD38_02145"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HEY0726839.1"
                     /translation="MLAIAAIALVVWYFFIHRPALKGAENLVVSPGRIAGDEATVSAK
                     IAGRVREIRVREGDSVSAGDVIAMLDDDQLRAREDAAKSAVQQAEARVRSSQQQISVL
                     RAQEQSSSISVDQSKIDVEGRVNQARAQVAAAEAALAQARAANNQAKYDYENQSQLAK
                     AGDLSERQGMLAKSNLEATTAAVNAAEEQVKAARGAYNAQLAALKTPAILSSQRLAIQ
                     EQINKAQSEITGAMADAEKARAQLREAEANRADLQIVAPFDGTITVRSVEPGEVINPG
                     TAIVTLVNLQELYLRVFVPIAEIDRVRVGQPARIYLDSRPERAIDASVSRIDPDAAFT
                     PENTYYREDRVRQVVGVKLAIKNSDGSAKPGVPGEGEILVEGSEWPARTRRQAP"
     gene            1768..>1952
                     /locus_tag="VGD38_02150"
     CDS             1768..>1952
                     /locus_tag="VGD38_02150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726840.1"
                     /translation="MAVVSPCVRVSLTLLVIDCHPLASFQNEIEQLQSCTDGTLELTD
                     GLVEIHLTFQLDPARIF"
BASE COUNT          350 a          574 c          565 g          463 t
ORIGIN      
        1 ccgctagcgt gagcatccta cgccgacctc cgccaatgct cgtgaccaat ctgtcggaaa
       61 ccggctcgag ctgaagccgc ttcagaagtt ccgcggcgcg cgcttcagct gttccactcg
      121 caatgctatg cagtccggcg acatacgaaa ggttttcggt aactgtgagg tcgggatcaa
      181 ctccgccggc ctgtgagaca tagccgatcc gttcgcgtac tttcgccggc gcctcacccg
      241 ccagcgttac ggttccttcg ttcggatgaa tcaggccgct gagcgctttg agcaaagtcg
      301 acttaccggc gccgtccggc cccaccaaac caaggatctc accctgccgg acagtgaggt
      361 cgatcccgtg aagagcctca aactgacgct tctttgattt cccataggtg tgtttgagac
      421 cgtgcgccac gatgatcggt gaggcgccgt tacttgatat tgcgctggtg ctcatcgcta
      481 tctcacggcg cctggcgccg cgtgcgggca ggccattctg atccctcgac gagaatctcg
      541 ccttcaccag ggactcctgg ttttgccgaa ccgtctgagt tcttgatcgc gagcttcact
      601 cctacaacct gacggactcg atcctcacgg tagtacgtgt tctcaggagt gaaggcggcg
      661 tcgggatcaa tgcgcgaaac acttgcatcg atcgcgcgtt cgggtcgtga atcgagatat
      721 atacgggccg gctgacctac acgcacgcgg tcgatttcgg cgatcggaac aaacacacgc
      781 agatagagtt cctggaggtt gacgagcgtt acgatcgcag tgccggggtt tattacttcg
      841 cccggctcga ccgaccgaac cgttatggtt ccgtcgaaag gcgccactat ctgcaaatcg
      901 gcacgattgg cttcggcctc gcgcagctgc gcgcgagctt tttcggcatc agccatcgcg
      961 ccggttatct ccgattgcgc cttattgatc tgctcctgaa tagcgagcct ctgggaactt
     1021 agaatggcgg gagtttttaa tgcagccagc tgggcgttgt atgctccacg agccgctttg
     1081 acctgctcct ctgcggcatt gaccgcagca gttgtggcct cgaggttcga tttggcgagc
     1141 atgccctgac gttcggaaag atctccggcc tttgcaagtt gcgattggtt ttcgtagtcg
     1201 tatttagcct gattgttggc ggctcgcgcc tgggccagcg cggcttcagc ggctgctacc
     1261 tgcgcgcgcg cctgattgac gcgaccttca acatcgatct tcgactggtc gacactgata
     1321 ctgctgctct gttcctgtgc tcgtagaacg ctgatctgct gttgcgaact gcggacacga
     1381 gcttctgctt gttgcaccgc agatttggct gcgtcttcac gcgctcgaag ctggtcatcg
     1441 tcgagcatgg cgattacgtc gccggcgctt acagagtccc cttcgcggac gcggatctcg
     1501 cggacgcgtc cggcaatctt ggccgagaca gttgcttcat cgccggcaat ccttcccggg
     1561 gagacaacaa ggttctcggc acccttcagc gcgggccggt gaatgaagaa gtaccagacc
     1621 actagagcga tagccgcgat cgcgagcatg aagagaatca aaccgccttt tctttttttt
     1681 cggcggcgcc tggttggcgg cggagtggtg ggaggttcgt tcctacgagc gtcggaagcc
     1741 gggagaacct gagggatttc cggctctgtg gccgtggtgt cgccctgcgt ccgtgtctcg
     1801 ctgactctgc tcgtcatcga ttgtcatcca ttagcgagtt ttcagaacga aattgagcaa
     1861 ttgcaaagtt gtaccgatgg cacgctggag ctcactgatg gcttggttga gatccatctg
     1921 acttttcaac tcgaccccgc gcgcattttt ga
//
LOCUS       DASWTX010000137         3240 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_67066, whole genome shotgun sequence.
ACCESSION   DASWTX010000137 DASWTX010000000
VERSION     DASWTX010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3240)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3240
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67066"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..990
                     /locus_tag="VGD38_02155"
     CDS             <1..990
                     /locus_tag="VGD38_02155"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY0726841.1"
                     /translation="QQVLERIGSLPNVRAVSMATYSPMSGTQRSSSIRVPGYTAQPGE
                     DLVVEDILTGPKYAETLGIALLRGRDIEVRDTVAAPRVAVVNETFANHYFKDQNPIGR
                     TFTFDDDTDDGAPLEIIGVVADIKNADAREKQMPAVYRPILQIQAQGSYTVNIQVRTN
                     GDAASFAGPVRQAINSIDDKIPIFSVTTLEEQVQENLKQDRLIAQLVSFFGVLALILA
                     CIGLYGVMAHGVARRTSEIGIRMALGARGGNIAWMILRETLLLVVFGLAIGIPTALFA
                     ARFVSSQLFGLKPADPVTLIGAAIVLTLVALIAGYVPARRASRVNPLNALRYE"
     gene            990..>3240
                     /locus_tag="VGD38_02160"
     CDS             990..>3240
                     /locus_tag="VGD38_02160"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0726842.1"
                     /translation="MDSVIKDLKFAVRGLIKRPAFTVIALVALALGIGANTAIFSLVN
                     AVMLRPLPFAEPDELVWVYANVRNGVNRASVSPLDYLDYRNQNKTFEQFATSYSMPLP
                     ATLTGGGDPERLQASIISGNYLETFGVAPALGRGFTLDNEKPGQDQVTILSHALWQQR
                     FGGDPSILNKTIVLNGRATEVIGVMGEGVSFPQTADLWLPMNLDADPADKTRFSHMLR
                     PVGRLKPGVSLSQAQADMDVIAAQLEQQFPESNQGWSLRLVLLREELVGGSRTMVLVL
                     FGAVAFVLLIACANVANLLLVRAAARQKEIALRTALGASRWRIVRQMITESLLLAIAG
                     GALGAFLATWGVQLLVMLSENSIPPTVQVTIDATVLGFTLLVSVITGVLFGLAPAFRT
                     ADVNLIDALKEGMRGEGQSALRSRTRSALVILESAIAVVLLIGAGLLIRSLVALQNVN
                     PGFDSQNVLTARVELSRFKYDNPDKAATFFQELEGRISNLPGVEAAGMVSELPLSGQG
                     NDMWYTVEGQPPVSRDQMPLADFRSVNQNYIKAMGIPLRGRNFTEQEVRQTAKVIIVS
                     QQLVQSAFPNEDALGKRLITGFKGEPYEIVGIAGDLLHQSLGAPPSPAMYFPMRQSGR
                     MNLVVRTKGDPLSLAGALRNEVRAIDPDQPVSAMRPMAEWVDSSVAQPRYRTTLLALF
                     AALAMVLAATGIYGVMSYSGAQRPHEIGVRMALGAQRVDVLKLVVGQGMMLTLIGVAI
                     GLLAAFGLTR"
BASE COUNT          631 a          952 c         1003 g          654 t
ORIGIN      
        1 caacaagtgc tcgagcgaat cggcagtctt cccaacgtgc gcgcggtttc gatggcgacc
       61 tactcgccga tgagcggcac gcaacgcagc agcagcattc gcgtgccggg ttacaccgca
      121 caaccgggcg aagatctggt cgtcgaagac attctgaccg gaccgaagta cgccgaaaca
      181 ctcggcatcg cgttactgcg cggccgcgat atcgaagttc gcgacacagt cgccgccccg
      241 cgcgtagccg ttgttaacga gaccttcgct aatcactact tcaaagatca gaacccgatc
      301 gggcgcacgt ttacgttcga cgacgacacc gacgacggcg cgccactcga aatcatcggc
      361 gtggtcgccg atatcaaaaa tgccgacgcg cgtgagaagc agatgccggc ggtctaccgg
      421 ccgattcttc agattcaggc gcagggctct tacacagtca acatccaggt tcgcacgaat
      481 ggcgatgccg cttcgttcgc cggtccagtc aggcaggcaa tcaacagcat cgacgacaag
      541 attccgatct tcagcgtcac gacgcttgaa gaacaggtgc aggagaacct caaacaggat
      601 cgcctgatcg cacagctcgt gagtttcttc ggcgtgctgg ccttgatact cgcgtgcatc
      661 ggcttgtacg gcgtgatggc ccacggcgtg gcgcgccgca cgagtgagat cggcattcgc
      721 atggcgctcg gcgcgcgtgg cggaaacatc gcgtggatga ttttgcgcga gacgttgctg
      781 ctcgtcgtgt tcggcctcgc gatcggcata ccaacagcac tgtttgctgc gcgatttgtt
      841 tcgtcgcagt tgtttggctt gaaacccgcg gatccggtga cgctgatcgg cgccgcaatc
      901 gtgttgacgc tggttgctct cattgccggt tacgttccgg cgcgccgtgc atcacgcgtg
      961 aatccgctta acgcattgag gtacgagtga tggactccgt aatcaaggat ctcaagttcg
     1021 ctgttcgtgg cttaatcaag cggcctgcct tcactgtgat cgcactcgtt gcgctcgcgc
     1081 tcggcatcgg ggcaaacacg gcaatcttca gtttggtgaa tgccgtgatg ttgcggccgc
     1141 ttccgttcgc cgaaccggac gaactcgttt gggtctacgc aaacgttcgc aatggcgtca
     1201 atcgcgcgag tgtgtcgccg ctcgactatc ttgattaccg caatcagaac aagacgttcg
     1261 aacagtttgc cacgtcgtac tcgatgccgc ttcccgcaac gctgaccggc ggtggagacc
     1321 ctgaacgtct tcaggcctcc atcatcagcg gcaactacct ggaaacgttc ggcgttgctc
     1381 cggcgttggg ccggggattc acactcgaca acgaaaagcc cggacaggac caggtgacca
     1441 tcctcagcca tgctctctgg cagcaacgtt tcggcggcga tccatcgatc ctcaacaaga
     1501 ccatcgttct caacggtagg gccaccgaag tgatcggcgt tatgggagaa ggcgtgagct
     1561 ttccgcagac ggcggacctt tggttgccga tgaacctcga cgccgacccg gccgacaaaa
     1621 cgcgtttctc tcacatgctg cggcccgtcg gaagattgaa accgggagtc agcctgtccc
     1681 aggcccaggc cgacatggac gtcatcgccg ctcaactcga gcagcagttt cccgagagca
     1741 atcaggggtg gagcttgcgt cttgtgctgc tgcgagaaga gctcgtcggc ggcagccgca
     1801 cgatggtcct ggtgcttttc ggcgcggtgg cgtttgtgct gctgatcgcc tgcgcgaatg
     1861 tcgcgaacct gctgttggtc cgcgctgccg cgagacagaa agagattgcg ctgcgaaccg
     1921 cgctcggcgc gagccgctgg agaatcgtga ggcagatgat cacggagagt ttgttgctgg
     1981 cgatcgcggg cggcgcgctc ggagcgtttc tcgcaacgtg gggcgtgcag ctgctggtga
     2041 tgttgagcga gaacagtatc ccgccgacgg tgcaggtaac gatcgacgcg actgtactcg
     2101 gattcacgct gctcgtttcg gtgatcacgg gcgtgctgtt tggcctggcg cctgcgtttc
     2161 gcacggcaga cgtcaacttg atcgacgcgc tcaaagaagg aatgcgcggt gaaggtcaga
     2221 gcgcactgcg cagtcgcact cgcagcgcgc tcgtcatact ggaaagcgcg atcgcggtgg
     2281 tcctgttgat tggcgcgggt ttgctgattc ggagtctcgt cgcgctgcaa aacgtaaatc
     2341 cgggattcga ttcgcaaaac gtgctgactg cgcgcgttga gctctcgcgg ttcaagtatg
     2401 acaaccccga caaggcggcc acgttctttc aggaactgga gggtcgtatc agtaacttgc
     2461 cgggagtcga agccgcggga atggtcagcg aactgccgtt gagcggccag ggcaacgaca
     2521 tgtggtacac ggtcgaaggg cagccgcctg tcagtcgcga tcaaatgcct ctcgccgatt
     2581 tccgtagtgt aaatcaaaac tacatcaaag ccatgggcat tcctctgcgc ggacggaact
     2641 tcaccgaaca ggaagtgcgg caaaccgcga aagtgataat cgtcagccag caactggtcc
     2701 aatccgcctt tccgaacgaa gacgcgctcg gcaaacggct gatcacggga ttcaaaggcg
     2761 agccatacga gatcgtcggg atagcaggcg acctgcttca ccagtcgctg ggagccccac
     2821 catctccggc gatgtacttc ccgatgcgtc aatcgggccg catgaacctg gtcgtgcgca
     2881 cgaagggtga tccgttgagt ctagcgggtg cgctgcggaa cgaagtgcgc gccatcgatc
     2941 ccgatcaacc cgtttcggcg atgagaccga tggcggagtg ggtcgattcg tcagtcgcac
     3001 agccgcgtta tcgcacgacg ttgctcgcgt tgtttgccgc gctcgcgatg gttctcgccg
     3061 cgaccggaat ctacggcgtg atgtcttatt ccggggccca acgacctcat gagatcggcg
     3121 tgcgcatggc tctcggcgca cagcgcgtcg acgtgttgaa gctcgtcgtg gggcagggaa
     3181 tgatgctcac gctgatcggc gtggctatcg gtctgctcgc cgcgttcggt ctgacgcgcg
//
LOCUS       DASWTX010000138         3820 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_305352, whole genome shotgun sequence.
ACCESSION   DASWTX010000138 DASWTX010000000
VERSION     DASWTX010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3820)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3820)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3820
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_305352"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1751)
                     /locus_tag="VGD38_02165"
     CDS             complement(<1..1751)
                     /locus_tag="VGD38_02165"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0726843.1"
                     /translation="MRWWLPLSPGFVFALLTITLLTGTASPTSAQSNAVIEGLVVDRN
                     GAVVPGVTITARNAAIAFERVTTSDTSGRYTLAALPVGEYVVTASAAGFKKQIIENLT
                     VEVGRRITQDFQLDPGDIAEQVTIVSTNDTIDRATAMGHVIDRHTVQNIPLNGRYFLD
                     LALLVPASVTPPQGAFSASPMRGLGSLAFNTAGNREETVNYQINGITLNNLTFSSISF
                     QPSINTIQEFKAENSTFSAEYGESSGAVVNIATRSGANDFHGELFEFFRNDALDARNF
                     FELTSDQPAPFKRNQFGGNIGGPILRDKLFFFVSYEGLRQRQGLDLNSVVLSDAQRAL
                     VTDPVVTRLVALIPRANFVHSSGISRFVSSASAPVDVDQWTADINYNLSERDRVHGYY
                     AIQDSELSEPNRLGNTIPGFGHITRALRQIFTLNETHTFNQSMVNELRLGFNRFSATS
                     TPLAQLNPADIGIENGIDDPIGLPQISIAGGSLNFGGPANQPSGRGDTTFVAADTLNW
                     VVGRHSLRLGGEYRQFLNNNFRRGTGSFNFPSIGAFVTGTANSFSVTLGNQSSSIAQG
                     ALGFFVQDSYRVTPRLNL"
     gene            complement(1965..3407)
                     /locus_tag="VGD38_02170"
     CDS             complement(1965..3407)
                     /locus_tag="VGD38_02170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726844.1"
                     /translation="MSKPMPSSKDNTLTVVEELIEMGKLDTLFRDLYLQRARTLLAPV
                     FSRGSYLRLQENTAQLPWLEQQLRAGVERGDWKRCADLTTRLRDVRTAIEGKAQFAKV
                     AETIYEKAADVSVDVFSSGLNVLVGVPTENVQSLRADALNLLLKLERNDPQKKDFYAR
                     RVSNFKQLSIVTDVSEKPKEERVDAAQLQQAALGALDAGDLSKLDQILASFNQQPAAD
                     QKQEETIDSNPAAAITDLGDDLLYNFAEQTLAAARELGLTPVRTQSRRQFAYLLPHGW
                     QPSFRKDEVKKWSKEKISRLTFPADTPEGAREAIDFYLLNPFINSCGTRYRVCLVAED
                     LLLEDFPEPEIRTDETSALLNKLKLNTRWGLSRIEIEDALLEHGHEVLEEVQLDPEHF
                     RLTVIPADLYTHLGPQRGWGQREMWTHFDGYRVLEGGKLQALAGGDRRFGGSHDVVSF
                     SPDYASGKVMARFALVQRKRMMDWQNQRTP"
     gene            complement(3456..>3820)
                     /locus_tag="VGD38_02175"
     CDS             complement(3456..>3820)
                     /locus_tag="VGD38_02175"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PP2C family protein-serine/threonine
                     phosphatase"
                     /protein_id="HEY0726845.1"
                     /translation="LENFDAQGIPLGMIAGMPYEDSSVRCLNAGDMLVLVTDGFYEWQ
                     NPENEEFGLERLKDTIRQARDCPAEEVITRLYAAVKDFSKGTEQNDDLTAVVLKRKNI
                     IGALKDEAAQSELVALTT"
BASE COUNT          778 a         1004 c         1147 g          891 t
ORIGIN      
        1 aggttcagac gcggagtcac gcggtaacta tcctgtacga agaagccgag cgcgccttgc
       61 gcgatactgc tcgactggtt accgagcgta acggagaaag agtttgccgt gcccgttaca
      121 aacgcaccga tactggggaa gttgaacgaa cccgtgccgc gccggaagtt gttgttgaga
      181 aactgccggt actcaccgcc gagtctcaat gaatgccggc ccacgaccca gttcagcgtg
      241 tcggccgcga caaacgtcgt atcgccgcgt ccggagggtt gattggctgg accaccaaaa
      301 ttgagactcc cgcccgcgat actgatctgc ggcaggccga ttggatcgtc gatgccattc
      361 tcgatgccga tgtctgccgg attaagttgg gccaacggcg tgctggttgc ggagaagcga
      421 ttaaagccaa ggcgcagttc gttcaccatc gactggttga acgtgtgcgt ttcgttgaga
      481 gtgaagatct gtcgcaacgc ccgcgtgatg tgcccaaagc ccgggatcgt gttgccgagg
      541 cgattgggtt cgctcaactc ggaatcctga atcgcgtagt aaccatgaac gcgatcgcgc
      601 tcgctcaggt tgtagttgat gtcggccgtc cactgatcga cgtcgacggg tgcgctcgct
      661 gaactgacaa accgtgaaat gccggacgag tggacaaaat tggctcgcgg aatcagcgcg
      721 actaatctcg tcactacggg atcggtcacg agcgcccgct gagcatcgct gagaaccacg
      781 ctgttgagat ccaggccctg gcgctgtcgc agaccctcgt aggaaacaaa gaagaacagc
      841 ttgtcgcgca ggattggacc gccgatgttt ccgccaaact gattgcgttt gaagggtgcg
      901 ggttggtcgg aggtcagttc gaagaagttg cgtgcatcga gcgcgtcgtt gcggaagaat
      961 tcaaacagct caccgtgaaa atcgtttgcg ccggaacgcg tcgcgatgtt gacgaccgcg
     1021 ccggagcttt caccgtattc agcgctgaac gtcgagttct cggctttgaa ctcctgaatc
     1081 gtgttgatgg acggttgaaa acttatcgag ctgaacgtga ggttgttcag agtgatgccg
     1141 ttgatctggt agttgaccgt ctcttcacga ttgccggccg tgttgaaagc gagcgagccg
     1201 agaccgcgca tcggcgaggc agagaaagcg ccttgcggtg gcgtcacgga cgcaggcacg
     1261 agcaacgcga ggtcgagaaa gtatcggcca ttgagcggga tgttctgcac ggtgtgcctg
     1321 tctatcacgt ggcccatggc ggtagcgcga tcgatagtgt cgttagtgga aacgatcgtt
     1381 acttgttctg caatgtcccc cgggtcgagt tgaaagtcct gtgtaattct ccggcccact
     1441 tcaacggtca ggttttcgat tatctgtttc ttgaacccgg cggcactggc agtcactaca
     1501 tattcgccga ccggcaaggc agctaaggtg tagcggccgc tcgtgtcgga agtggttacg
     1561 cgttcgaaag cgattgcagc attccttgcg gtgatcgtca cgccgggaac aacggcgccg
     1621 tttcgatcga ctacgagtcc ttcgataact gcgtttgatt gagctgaagt tggactggcg
     1681 gttccggtaa gcagagttat agtgaggagc gcgaagacaa agccagggga taggggcaac
     1741 caccagcgca tcggggagaa actttcgcga gggccgttat aaaacgccag ttagtctgcg
     1801 attgctgctg caactatagt taaaaacgat gcgcacagtt gtgattgaga tcacagccat
     1861 gcacttatca ggggctaacg agtcagagtc gggggaggtc cgataaattc aaaatccagt
     1921 gggcgcatta tagagacaat cgtcgagtgc tcgtatccgt aattctacgg agtacgctgg
     1981 ttctgccagt ccatcattct ctttctttgc accagggcaa aacgggccat tacctttccg
     2041 ctcgcatagt caggactgaa actcacgacg tcgtgcgacc cgccaaaccg cctatcgcca
     2101 cctgcgagag cctggagttt tccgccttcg agcactcgat aaccgtcaaa gtgggtccac
     2161 atttctcttt gtccccagcc gcgttgtggg cccagatgag tgtaaaggtc tgcggggatg
     2221 acggttagac ggaagtgctc cggatcgagt tggacctctt caagaacttc atgaccgtgc
     2281 tccaggagtg catcttcgat ttcgatgcgc gagagacccc agcgtgtgtt cagttttagt
     2341 ttgttcaaga gcgctgaagt ctcgtcggtt ctgatctccg gttccggaaa gtcctcgagc
     2401 aataaatctt cggcgacgag acaaacgcgg tagcgcgtgc cgcacgaatt gatgaacgga
     2461 ttcaacaagt agaagtcgat ggcttctctt gcgccctcgg gcgtgtcggc aggaaacgtc
     2521 agccgtgaaa tcttctcctt ggaccacttc ttgacttcgt ccttgcggaa cgatggctgc
     2581 cagccgtgcg ggagcaggta agcaaactgg cggcgcgatt gtgttcggac gggtgtcagg
     2641 ccaagttcac gcgcggccgc gagtgtttgc tcggcgaagt tgtaaagcag atcgtcgccg
     2701 agatcggtta tggccgcagc ggggtttgaa tcaatcgttt cttcctgctt ctggtcggcg
     2761 gcaggctgtt gattgaagct cgcgaggatc tggtccagct tggagagatc gcccgcgtcg
     2821 agagcgccga gagctgcttg ttgcaattgt gcggcgtcga cgcgctcctc tttcggcttc
     2881 tccgaaacgt ccgtgacgat cgagagttgc ttgaagttgg aaacgcggcg tgcatagaag
     2941 tctttcttct gcgggtcgtt gcgttcgagt ttgagcagca ggttgagcgc atctgcgcga
     3001 aggctctgaa cgttttccgt gggcacgccg acgagaacat tcaatcccga agagaagacg
     3061 tcgacggaaa cgtcggcggc tttttcgtag atcgtctccg cgaccttcgc gaattgcgcc
     3121 tttccttcga tcgcggtgcg cacgtcacgc aagcgcgtgg ttagatcggc acatcgtttc
     3181 cagtcgccgc gctccacacc ggcgcgcagt tgttgttcga gccagggaag ctgagcagtg
     3241 ttttcctgca aacgaagata gctgccgcgg ctgaacactg gcgccagcag ggttcgcgct
     3301 ctttgtagat aaaggtcccg gaagagcgtg tcgagcttgc ccatttcgat caactcctcg
     3361 acgaccgtga gtgtgttgtc tttcgacgat ggcatcggtt tactcatgac ttctccttaa
     3421 aactttgagc agatggcctg agacaaagtt ttcatttacg tcgtcagcgc gacgagctcg
     3481 ctttgtgccg cttcgtcttt cagcgcgcca atgatgtttt ttcgcttgag cacgacggcc
     3541 gtgagatcgt cgttctgttc cgtgcctttg gaaaaatcct tgaccgctgc gtacagccgc
     3601 gtgatgactt cttccgcggg acagtcgcgc gcctgtcgaa tcgtgtcctt tagtctttcg
     3661 agtccgaact cttcgttttc cgggttttgc cattcataaa atccgtcggt gacgagaacg
     3721 agcatgtcgc ccgcgttcag gcacctgacg ctggagtctt cgtaaggcat gccggcgatc
     3781 attccgagcg ggattccctg tgcgtcgaag ttttccaggt
//
LOCUS       DASWTX010000139         2647 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_305384, whole genome shotgun sequence.
ACCESSION   DASWTX010000139 DASWTX010000000
VERSION     DASWTX010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2647
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_305384"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1737
                     /locus_tag="VGD38_02180"
     CDS             <1..1737
                     /locus_tag="VGD38_02180"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0726846.1"
                     /translation="YKVLSAHAAGQIEFGTYERGGKLTVIGEAIAESYTNADARDAFA
                     IPDEQLFTTTQEIGTPLERDLRDYRDVLKAFPLPALARRIFGTLENGRIDRRLRHTYR
                     GLRRDLDLVREHLGRTRPLMMELPAALVPFELLFQITMLGGAREDARQAYPQVVSELE
                     TIVSEHLSNPNATVAETLIATIRVYDLFKSVIPTDDSVQQVESPEDQTDSDDDSPLTE
                     RMKQRQTQQMPQRRDARELFNAWNDPLQEGEPDALTGAEAWSESETPELALAEGEVAY
                     NYDEWDRELTDHRIGWCRVVEKRVKHGDRSFVEQTRERHKGVISSIRHQFQLMKPENL
                     TRVANEVDGEEFDLNAVIDYVIDRRADGQQSERIYTKRLRRRRDVAVSFLLDQSSSTA
                     RTIGRHPLQPYTRPGRRIIEIEKEGLVLMSEALEAVGDVYSINGFTSEGRRNVKFYVV
                     KDFNEKYNDEVKQRIGGINYQNNTRLGAASRHATAKLAKQDARTRLLIVLSDGRPYDH
                     DYGDARYAREDTREALRQAKNEGITPFCITIDRESEAELKDLYGEVGYTIIDDVLSLP
                     ERLPGIYRRLTT"
     gene            complement(1727..>2647)
                     /locus_tag="VGD38_02185"
     CDS             complement(1727..>2647)
                     /locus_tag="VGD38_02185"
                     /inference="COORDINATES: protein motif:HMM:NF014585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase B/oxoprolinase family protein"
                     /protein_id="HEY0726847.1"
                     /translation="ARLMRHTIRSIPDGVYESEDALDDDGIDDQPVRIKVRITIRDER
                     ALIDFNGSAPQVSGAINAVEAITVSAVSYVFRCLVGGEVPASAGLMEPIEVLAPAGTV
                     VNANPPASVAGGNVETSQRIVDVLFKALAQALPDRIPAASQGTMNNLTIGGIDTRTGQ
                     EFSYYETVAGGMGARPSLDGMSGVHTHMTNSLNTPAEAIEYAYPLRVCEYRLRHNSGG
                     EGKQRGGDGVVREIETLVPARMSLLADRRKRAPFGLQGGSDGKAGLNKINGREIAAKS
                     SHELQAGDRVRIETPGGGGFKADEKSEIKS"
BASE COUNT          551 a          793 c          781 g          522 t
ORIGIN      
        1 tacaaagttt tatcggcgca cgcggccggg cagattgagt ttggcactta cgaacgcggc
       61 ggcaagttga ctgtcatcgg tgaggccatt gccgagagct acaccaacgc agacgcacgc
      121 gacgcgtttg cgattccgga cgaacagctg tttacaacga cgcaagaaat tggaacgccg
      181 ttagaaaggg atttgaggga ttatcgcgac gttctcaaag ccttcccact accagcactc
      241 gcgcggcgca tcttcggcac gctcgaaaac ggccgcattg atcgccgtct gcgtcacacg
      301 tatcgtggtc tgcggcgcga tctcgatctc gtgcgcgaac atctcggacg cacgcggccg
      361 ctcatgatgg agcttcccgc ggcgctcgtt ccattcgagt tgctgtttca aatcacgatg
      421 ctcggcggtg cgcgcgaaga cgcacgccag gcttacccgc aggttgtttc ggaacttgaa
      481 accatcgtca gcgagcatct ctcaaatccg aacgcgaccg tggctgagac gctcatcgcg
      541 acgattcgtg tttacgatct gtttaaatcc gtgattccga cagacgattc agtgcagcaa
      601 gtcgaatcgc cggaagacca aaccgacagc gacgacgatt cgcctctcac cgaacgaatg
      661 aagcagcggc aaacgcagca gatgccgcag cggcgcgacg cgcgcgagct tttcaacgcg
      721 tggaacgatc ctctacagga aggcgaaccc gacgcgctca cgggcgcgga agcgtggtcc
      781 gaatccgaga ctccggagct cgcgctggcc gaaggcgagg ttgcttacaa ctacgatgag
      841 tgggatcgcg agttgaccga tcatcgcatc ggttggtgcc gcgtggttga aaaacgcgtg
      901 aagcacggcg atcgatcgtt tgtcgaacag acacgcgagc gccacaaggg cgtcatctcg
      961 tcgatccgtc accagtttca gttgatgaaa cccgagaacc ttacgcgcgt ggcgaacgaa
     1021 gtggatggcg aagagtttga tctgaacgcc gtgatcgatt acgtgatcga tcgccgtgct
     1081 gatggacagc agtccgaacg aatctacacg aaacggctgc ggcggcgccg ggacgtggcg
     1141 gtttcgtttt tgttggacca gtcgtcatcg accgcgcgca cgattgggcg ccatccgctg
     1201 caaccgtaca cgcgcccggg ccgccgcatc atcgagatcg aaaaagaagg gctcgtcttg
     1261 atgagcgagg cgcttgaggc tgtcggcgac gtttattcaa tcaacgggtt cacttcggaa
     1321 ggccggcgca acgtgaagtt ttacgtcgtg aaggacttca acgagaagta caacgacgaa
     1381 gtgaagcagc gcatcggcgg catcaactac cagaacaaca cgcgtctcgg cgccgcaagt
     1441 cgtcacgcca ccgcgaaact cgcgaagcag gacgcgcgta cacgcctgct gatcgtttta
     1501 tccgacggcc gcccttacga tcacgattat ggcgacgcgc gttacgcgcg tgaagacacg
     1561 cgcgaggcgt tgcggcaggc aaagaacgaa ggcatcacgc ccttctgcat cacgatcgat
     1621 cgcgaatcag aggctgagtt gaaggatttg tacggcgagg tgggctacac gatcatcgac
     1681 gacgtgctct ctttacctga acgtctgcca ggtatttaca ggcgcctcac gacttaatct
     1741 cgcttttttc atcggcttta aatccccctc ctccaggcgt ttcaatcctg acgcgatcac
     1801 ccgcttgaag ttcgtgagaa ctcttcgcag cgatctcacg gccgttgatt ttgtttagac
     1861 cggctttgcc atcgctacca ccctgcaaac caaatggtgc gcgcttgcgg cgatcggcga
     1921 gcaatgacat gcgcgcgggc acgagcgttt cgatctcgcg cacgacgccg tcgccgccgc
     1981 gttgcttacc ttcaccaccg gaattgtgcc gcaggcgata ctcacacacg cgaagcggat
     2041 acgcgtattc gatcgcttcg gcgggcgtgt tcagactgtt cgtcatgtgc gtgtgcacgc
     2101 cgctcatgcc gtcgagtgac ggccgcgcgc ccatgccgcc ggcgacagtc tcgtaatacg
     2161 aaaactcctg accggtgcgc gtgtcgatgc cgccgatggt caggttgttc atcgtgccct
     2221 gactcgcagc cggtatccga tccggtaacg cctgggccaa cgccttgaac aacacgtcca
     2281 cgatgcgttg tgatgtctcg acgtttccgc ccgcaaccga cgccggtgga ttggcgttga
     2341 cgaccgttcc cgcgggcgca aggacttcga tcggctccat caatccggcg ctcgccggta
     2401 cttcgccgcc gacgagacaa cgaaacacat acgacaccgc cgaaacagtg atcgcctcga
     2461 cggcgttgat ggcgccggat acttgcggcg cgctgccgtt gaagtcgatc agggcgcgtt
     2521 cgtcacggat cgtgatgcgg acttttatgc gcaccggctg atcgtcgatg ccgtcgtcgt
     2581 ccaatgcgtc ctctgattcg taaacgccgt cgggaatgga tcggatcgtg tggcgcatca
     2641 ggcgcgc
//
LOCUS       DASWTX010000140         2545 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_67152, whole genome shotgun sequence.
ACCESSION   DASWTX010000140 DASWTX010000000
VERSION     DASWTX010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2545
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67152"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1790
                     /locus_tag="VGD38_02190"
     CDS             <1..1790
                     /locus_tag="VGD38_02190"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0726848.1"
                     /translation="AAPIERDVSRRTVAIVVDDLGLSAESMHHVRRQVRKFLAEELQP
                     NDLLAIIRTGGEMGALQQFTNDKRMLNRAVDLLRWNPCSRVGLSTLAREEDSRGGGCF
                     GTNIPQTLRALRFILDAMGRLPGRKSMIVMSDDIPIRATERGTEGAEQVLVGGDVRNY
                     GDWLRRIAETAIRSSVVIYSVDTQGLQVTGIRASDAVTSSTILANGGGVGSVPERSAR
                     LGSLTAARSRTLIDRSEGSLRIAQQTGGFQVRNSNSFQLDRIFEDQSGYYLIGYRPSE
                     DTFNRQVHQIKAKVKRSGMTLRTRAGFFGVTEEEANRGRTVVKDQVNLALLSPFGAQD
                     LELDVSSFFANAKSDGSINRSFIYLNPANLSFTSVNGQRETSLEMHGAVFGDNGAVID
                     RVKRDVVLSMGEAEYQQAMRDGLPDAVRLRLDLPTKKPGSYQVRIAVRDRTSSKIGSA
                     GQYVAVPDLNDKRLALSGIVLRSVSRASTQAAVMATPPARRFAANSDLYFAFVVYNAA
                     LNQATQLPNLTMETKLFRDGKVVGLPSVTPIEIKNQADLSRLFINGGIRLNPDLDPGD
                     YYLQVVITDKAARDKQPPITQWVDFQIVK"
     gene            1816..>2545
                     /locus_tag="VGD38_02195"
     CDS             1816..>2545
                     /locus_tag="VGD38_02195"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEY0726849.1"
                     /translation="MRKSISLLTLLFFCSVTACAQHMNGNHHSAPPAEMTETQDWAKQ
                     RLAKSSRHQEWVKVKNGAREVSSFVVYPEVKNKATAVIVIHEIFGITDWVQSLTDQLA
                     EAGYIAIAPDLLSGMGPNGGGTNSLDRTAIGQKIRDLPPDQITADLNAVADYVSKLPA
                     ANGKVVVAGYCWGGSQTFRYATNNPNIKAAFVFYGSAPTVTDGSIDKEALARIKAPVY
                     GFYAGNDARINATLPATQQAMTELK"
BASE COUNT          582 a          691 c          753 g          519 t
ORIGIN      
        1 cagccgctcc gatagaacgc gacgtctcga gacgcacggt ggcgatcgtt gtcgacgacc
       61 tcggtttgtc ggccgagagc atgcaccacg ttcgccggca ggtacgaaag ttcctcgctg
      121 aagagttgca gccaaatgat ctgctcgcga tcatccgcac cggtggtgaa atgggtgcgt
      181 tgcaacagtt caccaacgac aagcgcatgc tcaaccgcgc tgttgatctg ctgcgttgga
      241 atccttgtag tcgcgtcgga ttatcaaccc tggcgcgcga ggaggattca cgcggcggtg
      301 gctgctttgg cactaatatc ccgcaaacac tgcgagcttt acgattcatc ctcgacgcga
      361 tgggccggct tccgggccgg aagtcgatga tcgtgatgtc ggacgacata ccgattcgcg
      421 cgacagaacg tggcactgag ggagcagagc aagtgctggt cggcggcgac gtcaggaatt
      481 acggcgactg gttgaggagg atcgccgaga cagccattcg ctcttcggta gtgatctatt
      541 cagtcgatac gcaaggtctg caagtcaccg gaatccgggc gtccgatgcg gtcaccagca
      601 gtacgattct ggcgaatggt ggcggtgttg gcagtgttcc ggagcgttca gcacggctcg
      661 gtagtttgac tgcggcacgt tcccggacat tgatcgatcg gagtgaaggc agtttaagaa
      721 tcgcgcagca aaccggcggt tttcaggttc gcaactcaaa cagcttccaa ctcgatcgca
      781 tcttcgagga tcagagcggc tactacttga tcggttaccg gccgagtgaa gacactttca
      841 accgccaagt ccatcagatc aaagctaaag taaaacgctc tggaatgacg ttgcgaacgc
      901 gcgccggttt ctttggtgtc accgaagagg aagcaaaccg cggacgtacg gttgtcaaag
      961 atcaggtaaa cctggcgttg ctgtcaccgt tcggcgcgca ggatctcgag ctcgacgtga
     1021 gctcgttctt tgcaaatgcg aagagtgacg ggtcgattaa tcgctcgttc atttatctca
     1081 accctgcgaa cctcagcttc acttccgtta atggacaacg cgaaacatcg ctcgagatgc
     1141 acggcgcggt gttcggcgac aacggcgcgg ttatcgatcg cgtcaaacgc gacgtcgtgc
     1201 tgagcatggg cgaggccgag taccaacagg caatgcgcga cggcctgcca gacgcagtgc
     1261 gactgagatt ggacctgccc acgaagaagc cgggctcgta tcaggtgaga attgcggtgc
     1321 gtgatcgaac gtcgtcgaag atcggatctg ccggacagta cgtggccgtg ccggatctga
     1381 atgacaagcg gttagcgttg tcggggattg tattgcgcag tgtcagccgg gcgtctacgc
     1441 aagcggccgt gatggcgacg cctcccgcga gacgctttgc ggcaaactcc gatctttact
     1501 tcgcgttcgt ggtttacaac gccgcgctta accaggcgac gcagttacca aacctgacga
     1561 tggagactaa actgtttcgt gacggcaagg ttgtcgggct gccctctgtg actccgatcg
     1621 agatcaagaa ccaggcagac ctgtcgcgcc tgtttatcaa cggcggcatt cgcttgaatc
     1681 cggatctcga ccccggcgac tactatcttc aggtcgtgat taccgacaaa gcagcacgag
     1741 acaagcagcc cccaatcaca caatgggtag acttccagat tgtgaagtga ttacgagaac
     1801 taacgggaga tgagaatgag aaaatcgatc agtctgttaa cgttgctctt cttttgttcg
     1861 gtcactgcat gcgcgcagca catgaacggc aaccatcaca gcgcgccgcc tgcggaaatg
     1921 accgaaacgc aggattgggc caagcagcgg ctggcaaaat cttcacggca tcaggagtgg
     1981 gtgaaagtaa agaacggcgc gcgtgaagtg agcagttttg tggtctatcc ggaagttaaa
     2041 aacaaggcga cggccgtgat cgtgattcac gagatctttg gcataactga ctgggtgcag
     2101 agcttgaccg atcaacttgc cgaagccggt tacatcgcca tcgcgcccga tctactttcc
     2161 ggcatgggac cgaacggcgg cggcacgaac tcgctcgatc gcaccgccat cgggcagaag
     2221 atccgcgatc tgcctcccga tcagatcacg gccgacctga atgcagtggc agattacgtc
     2281 tccaaacttc cggccgcgaa tggcaaggtt gttgtagctg gttattgctg gggcggttcg
     2341 cagacgttcc gttacgcgac caacaacccg aatatcaaag ccgcgtttgt gttctacggt
     2401 tcagcgccaa cagttactga tggttcgatc gacaaagaag cactggcgcg aatcaaagcg
     2461 ccggtttacg gtttttacgc cggcaacgac gcgcgcatca acgcgacgct gcccgcgacg
     2521 cagcaagcaa tgaccgaact gaaaa
//
LOCUS       DASWTX010000141         2562 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_67165, whole genome shotgun sequence.
ACCESSION   DASWTX010000141 DASWTX010000000
VERSION     DASWTX010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2562
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67165"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1370)
                     /locus_tag="VGD38_02200"
     CDS             complement(<1..1370)
                     /locus_tag="VGD38_02200"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF013640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HEY0726850.1"
                     /translation="MPVCAKSFAEMEEACARASAVGDIVELRLDCLENNLCLDNSDLI
                     PGLDSLTRKLAGPFIVTFRPSEQGGYRVLGRPEREAFWVGIGARWETLCDIEADLVSE
                     CSFDWARVIVSHHDFSGVPDDLEEIYARLAATPARIVKIAVQANDITDCIRVFRLLER
                     GLKEKRELIAIAMGNAGIATRILGPSRGAYLTYGSLEDASATAPGQVNAEQMRSVYRI
                     DQIDRETMICGLVGLPVMHSVSPHMHNAAFAVEGVNGVYLPLEVRDVELFVRRMIHPK
                     TRELDWNVRGLSVTAPHKSSVMELLDWISPEAQEIGAVNTVVVEGHELHGYNTDVHGL
                     IEPLRDVLGSLDGRRVAVIGAGGAARAAVWAIRRDKAEVMLFARDPNKAKPMSEDFGV
                     QCEQLQTARFAGYDVVINATPEGPATADQLAGAGLVYDLIYNPIETGFLAEAREAGCQ
                     TLGGLP"
     gene            complement(1384..1911)
                     /locus_tag="VGD38_02205"
     CDS             complement(1384..1911)
                     /locus_tag="VGD38_02205"
                     /inference="COORDINATES: protein motif:HMM:NF024637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEY0726851.1"
                     /translation="MFCPKCATQNLDGASFCRTCGANISLVPQALTGQIVQTPPPVEE
                     VLDDSCGTRRGRRRELTLDTAFKNMFIGVAFLLISIALSRTIGAGWWFWMLIPAFSLM
                     GTGIAQYIRIREREKRVLMAQPRMQPVMQYQAPVELPRRTDELRPPAPSVTEGTTRHL
                     GVEAPTRHLEAQERK"
     gene            complement(1917..>2562)
                     /gene="rlmB"
                     /locus_tag="VGD38_02210"
     CDS             complement(1917..>2562)
                     /gene="rlmB"
                     /locus_tag="VGD38_02210"
                     /inference="COORDINATES: protein motif:HMM:TIGR00186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEY0726852.1"
                     /translation="VLDLAREKGVPVQRVPRLDLDRSLGEARHQGVVARIAAAHYADA
                     DDLLDTLAAKVGTPDPPLVLGLDAIEDPRNMGSIVRTAECAGVHGVFIAERRAVGLTG
                     AVAKVAAGALEYVPVARVTNLVRLIEQLKERNIWVVGAAGEAKQTYTEWDWTLPAAIF
                     LGNEGHGLHRLVREHCDTLVRIPVVGKLESLNVSVAAGVLLYEARRQRKSLSRG"
BASE COUNT          566 a          885 c          617 g          494 t
ORIGIN      
        1 atcggtaacc caccgagcgt ttgacaccca gcctcgcgcg cttccgccaa aaatccggtt
       61 tcaatcgggt tgtaaatgag atcgtaaacg agccccgcgc cggcgagttg atcggctgta
      121 gcgggaccct ccggcgtagc attaatcacc acgtcgtagc ctgcaaacct cgctgtctgt
      181 agctgttcgc actgaacccc aaagtcctcg ctcattggtt ttgctttatt cggatcgcgc
      241 gcaaagagca tcacttccgc tttatccctt ctaatagccc acacggcagc gcgcgctgcg
      301 cctccagcgc caatcaccgc cactcgcctt ccgtccaacg aaccaagcac gtctcgcaac
      361 ggctcgatca atccgtgtac gtccgtgtta tatccgtgta gttcgtggcc ctcaaccacc
      421 acggtgttga ccgcaccgat ctcctgcgct tccggcgaga tccagtccaa caactccatc
      481 acgctcgact tgtgcggcgc cgtgacactc aacccgcgca cgttccagtc caactcgcgc
      541 gtcttgggat gaatcatgcg tctgacaaac aactcaacat cacgcacttc caacggcagg
      601 taaactccat tcacgccttc taccgcaaac gcagcattgt gcatgtgcgg cgaaacggag
      661 tgcatcaccg gcaaaccgac caggccgcag atcatcgtct cgcgatcgat ctggtcgata
      721 cgataaaccg atcgcatttg ctctgcgttg acctgtccgg gcgccgtcgc actcgcatct
      781 tccaacgaac cgtaagtcaa atacgcgcca cgcgatggtc caagaatacg cgtcgcaatc
      841 cccgcgttgc ccatagctat cgcaatcagc tcgcgcttct ccttcaaacc acgctccaac
      901 aaacgaaaca cacgaataca atcagtgatg tcgttcgcct gcacggcaat cttaactatg
      961 cgcgcgggcg tcgccgccag tcgtgcataa atctcttcga gatcatccgg cacaccgctg
     1021 aagtcgtgat gcgacacaat cacccgagcc caatcaaaag agcactcaga cacaaggtca
     1081 gcttcaatgt cgcacaatgt ctcccaacgg gctccaatcc caacccaaaa ggcctcacgc
     1141 tcgggacgcc ctagaacgcg gtaaccgccc tgctctgatg gcctaaaggt gacgataaaa
     1201 ggtcccgcta gcttgcgggt taaggaatca aggccgggga tgaggtcgct gttgtcgaga
     1261 caaaggttgt tctcgagaca gtccaaccgc agctcgacga tgtcgccgac cgcacttgca
     1321 cgcgcgcacg cctcctccat ctccgcaaaa ctcttcgcgc agacaggcac acaaacgcgc
     1381 actctatttt cgttcctgag cttcgaggtg tctcgtgggt gcttcaactc caagatggcg
     1441 ggtcgtgcct tcagtcacac tcggcgccgg cggtcgcaac tcatccgtcc tgcgcggcag
     1501 ctccaccggc gcctgatact gcatcaccgg ctgcatgcgc ggctgcgcca tcaacacacg
     1561 cttctctctt tcacgaatgc gaatgtactg cgcgatgccc gtgcccatca atgaaaacgc
     1621 cgggatcaac atccagaacc accaaccggc gccaatcgtt cgcgacaacg caatcgagat
     1681 cagcagaaac gcgacgccga tgaacatgtt cttgaacgcc gtgtcgagcg tcagctctct
     1741 tctgcggcca cgccgcgtac cacagctatc gtcgagcacc tcttcaaccg gcggcggcgt
     1801 ctgcacgatc tgacccgtca acgcctgcgg cacgagactg atgtttgctc cacaggtgcg
     1861 acaaaaactc gcgccatcaa gattctgcgt tgcgcattta ggacagaaca ttcgatttag
     1921 cctctcgaaa gtgattttcg ctgacgcctt gcttcgtaaa gcaacacgcc ggctgctacc
     1981 gaaacgttca atgattccaa cttaccgacc accggaatac gcaccagcgt gtcgcaatgt
     2041 tcacgcacga gccggtgcag cccatgtcct tcgttgccga gaaagatcgc ggcgggcaac
     2101 gtccagtccc attcggtgta cgtttgcttc gcctcgccgg ccgcgccaac aacccaaatg
     2161 ttacgttctt tcaactgctc tatcaatctc acgaggttcg tcacgcgcgc gaccggcacg
     2221 tattccaaag ccccggccgc gaccttcgcc accgcgccgg tcaaacccac tgcgcggcgt
     2281 tcggcaataa acacaccatg aacacccgcg cactccgccg tgcgcactat cgagcccatg
     2341 ttgcgcggat cttcgatcgc gtccaaaccg agcaccaacg gcggatcggg cgtgccgact
     2401 ttcgcggcca acgtgtccaa caaatcatcg gcatcggcgt aatgcgccgc cgcgatccgc
     2461 gcgaccacac cctggtgccg cgcttcgccc aacgatcgat cgagatccaa acgcggcacg
     2521 cgttggaccg gcacgccctt ctcacgcgca aggtccaaca cc
//
LOCUS       DASWTX010000142         3320 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_370439, whole genome shotgun sequence.
ACCESSION   DASWTX010000142 DASWTX010000000
VERSION     DASWTX010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3320
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370439"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..764)
                     /gene="yidC"
                     /locus_tag="VGD38_02215"
     CDS             complement(<1..764)
                     /gene="yidC"
                     /locus_tag="VGD38_02215"
                     /inference="COORDINATES: protein motif:HMM:TIGR03593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0051205 - protein insertion into membrane
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEY0726853.1"
                     /translation="MQQRRLLLALLLSSVILFSWTYFFPAPTPPANQQAGTTPSPTPA
                     ATVDASQSPAPATPAAPVVTTINEAPQRTITIRTELYDAKFDTRGAEPISWVIKKNKN
                     SGSEIYSVAGHKSEKKPLELISPEGLKRQPRLVPLQLHTGDAALDTLLASSTYRVEGA
                     DVSNGDVELNLAENETKQLTFVLEDSNGLQVRKTISFNAAQYQTEFSVQVKRGGAIVP
                     QVKATIGPSIGDQGISQHTFYSVAPEAVAYVGGVLER"
     gene            complement(789..998)
                     /gene="yidD"
                     /locus_tag="VGD38_02220"
     CDS             complement(789..998)
                     /gene="yidD"
                     /locus_tag="VGD38_02220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002474682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEY0726854.1"
                     /translation="MKTVLISFLRFYKLAISPLLPPSCRFVPTCSEYAVDAISRYGAA
                     RGSLLAVRRLLRCHPFNPGGYDPVK"
     gene            complement(1393..1539)
                     /gene="rpmH"
                     /locus_tag="VGD38_02225"
     CDS             complement(1393..1539)
                     /gene="rpmH"
                     /locus_tag="VGD38_02225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006404565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEY0726855.1"
                     /translation="MSKRTFQPNNRRRAKTHGFRARMASKNGRLVLKRRRAKGRKRLT
                     PAHY"
     gene            2002..>3320
                     /gene="dnaA"
                     /locus_tag="VGD38_02230"
     CDS             2002..>3320
                     /gene="dnaA"
                     /locus_tag="VGD38_02230"
                     /inference="COORDINATES: protein motif:HMM:TIGR00362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEY0726856.1"
                     /translation="MNTSVESNVWGRILHSLEGRLNQQALETWFHPIQFERLDSAQHV
                     IHLRAPNQIVKDWVVSNYAQALDESLNEQRLGGYSVGWVIGKVPEMTPDRGASRAEQS
                     AENITAPVTTEPPVDVNQPLNLATSVVLSEPSLSSKYTYESFVVGSCNQFAHAASLAV
                     AEAPGRTYNPLYLYGGVGLGKTHLMHACGHAIKSRNQHLKLCYISSERFMNDLINAIR
                     YDKTQSFREKYRSVDVLLIDDVQFMAGKERTQEEFFHTFNALYDQQKQIVISSDCPPR
                     EIPTLEERLHSRFEWGLIADIEPPDLETKIAILKRKGDAIGVSIPDDVAIFIAGRVKS
                     NVRELEGSLVRLIAISSLRGEPISKTLAQDAIRNFAKEEEPGVITIQQIQKLVASTYK
                     LTADELVSKNNARNISHPRQVAMYLCKHLTKHSYPEIGRAFGGKHHTT"
BASE COUNT          778 a          893 c          860 g          789 t
ORIGIN      
        1 cgctcgagca cacctccgac gtaagcaacg gcctccggag cgacggagta aaacgtgtgt
       61 tgactaattc cctggtcgcc gatactcgga ccgatcgtcg ccttcacctg cgggacgatg
      121 gcgccaccac gttttacctg caccgaaaat tcggtctgat actgcgcggc attaaaactg
      181 atcgtctttc gaacctggag cccgttcgaa tcctcgagca caaacgtgag ctgctttgtc
      241 tcgttctccg cgagattcaa ctcaacatcg ccattcgaaa catcagcgcc ttcgacgcga
      301 tacgtcgacg aagccagcaa cgtgtcgagg gccgcgtcgc ccgtatgcaa ctgcaacggc
      361 accagccgcg gctgtcgctt cagtccttcc ggcgagatta attcaagcgg ctttttctca
      421 cttttgtgac cggcaaccga atagatctca gagccgctgt tcttgttttt cttaatgacc
      481 caactgatcg gctcggcgcc gcgcgtatca aacttcgcgt cgtaaagttc tgtcctgatc
      541 gtgatcgtac gttgcggcgc ttcgttaatg gtcgttacga ccggagcagc cggagttgcg
      601 ggcgccggcg actgcgacgc atctaccgtg gctgccggcg tcggactcgg cgtcgtacct
      661 gcctgctgat ttgcaggcgg cgtgggagca gggaaaaaat aggtccacga aaacaggatt
      721 actgaggaga gtaataaagc aagtagaagt cgtcgttgtt gcatttggtg gacgtcttac
      781 ctaaccggct atttaaccgg atcgtagcct ccgggattaa atggatggca acgaagcagt
      841 cgccggacag ctaacagaga tccccgggcc gcgccgtagc gggaaatcgc gtcaactgca
      901 tattccgaac aagtgggaac gaaacggcac gaaggaggta gcagtgggga aattgccaac
      961 ttataaaatc tgagaaatga gatcagaacc gtcttcacac aaccatcgct tacctgacag
     1021 gatccctttg ttccagtctg ccaaccttct caattattcc ctctaactcc tcacgcggcg
     1081 cattcagctt ttgactcaac actgcgggct ttgcgttcaa aacccaatca taatttttta
     1141 tcagcgcact taacgacggt tcattcgatc gaaaagtttc acgaagcaaa cgcttggctc
     1201 gatttcgctg cacggctttt ccgagcgcct tcttcgaagc ggtcactccc agccgatgat
     1261 tcattgcgtc gttcgccagc acaaatacgg tgatgaatac gccgtcgtac cgtttaccgt
     1321 tcctgtagac gtgctggaat tctcccgaat ctcgcaagtg cttccgcatg tctaacgacg
     1381 caaatgcact tcttagtaat gcgctggagt aagtcgcttt cttcctttgg cgcggcgtct
     1441 cttcagtacg agccgtccgt tcttgctagc catgcgggca cgaaaaccgt gtgtcttcgc
     1501 cctgcgtctg ttattaggtt gaaaagtgcg cttcgacata gtgatgaatc tcctctaaaa
     1561 cgaaaacgct aagactaatc ttcgccagaa gttatgtcaa gaaaacgcga gggtgttcgg
     1621 cccagccggg agttatatct gtacgagaac cgtacccgag aattttgttt gccttctgtt
     1681 taacctgggt tcgatatatt actttctgtc gcttgattga cccgaaagtt ctatgttagt
     1741 ctccgctcgc tttaagactg accgccctgt aaacagttga tactacaaga ctttaaagca
     1801 ttactttaag ccggaggact ttttccacta cctgtggaaa acgttgtgga aaagtcttcg
     1861 gcgtggttgt ttcggtccgg cggacaaggg agtttgggag aggtagacgt tagagttctg
     1921 cggataggct tgccgccggc ggcgtacggt tctattacgg ggcttttagt caattgagaa
     1981 ccttcccttc acgtttttca gatgaacact tctgtcgaga gtaatgtttg gggccgtatt
     2041 cttcattccc ttgagggcag actcaatcaa caagctttag aaacctggtt ccatccaatc
     2101 cagtttgaac ggctcgacag cgcgcaacac gtcattcatt tgcgagctcc gaatcagatc
     2161 gtgaaggact gggtcgtgag caactacgcg caagcgctcg acgagtcgct gaacgaacaa
     2221 cgactcggcg gatactcggt cggttgggta atcggaaaag tgccggagat gactccggac
     2281 cgcggcgcct ctcgagcaga acaatctgcc gagaacatta cggccccagt tacaaccgag
     2341 ccgcccgtcg acgtcaatca gccgcttaac cttgcgacat cggttgtctt gagtgaacct
     2401 tcgctgagct ccaaatacac ttacgagagt tttgtcgtcg gttcgtgtaa ccagtttgcg
     2461 cacgctgctt cgctcgccgt tgccgaagct cccggccgaa cttacaaccc gctttatctc
     2521 tacggcggtg tgggcttggg caaaacgcac ctgatgcacg cgtgcggtca cgcgatcaaa
     2581 tctcgcaatc aacatctcaa actctgctac atctcgtcag aacgtttcat gaacgatctg
     2641 atcaacgcga ttcgttacga caagacgcag agctttcgtg agaaatatcg atcggtcgac
     2701 gtgctgctga tcgacgacgt gcaattcatg gccggcaagg agcgcacgca ggaagaattt
     2761 ttccacacgt tcaacgcgct ctacgatcag caaaaacaga tcgtgatcag ttctgactgt
     2821 ccaccgcgcg aaataccgac acttgaagaa cgtcttcact ctcgtttcga gtggggcttg
     2881 atcgccgata tcgagccgcc ggatctggaa acgaagatcg cgattctcaa acgtaaaggc
     2941 gatgcgatcg gcgtcagtat tccggacgac gtcgcgatat tcattgccgg ccgagtgaag
     3001 agcaatgttc gggagctgga aggatcgctg gtgcgtttga tcgcgatctc ttcgttgcgc
     3061 ggcgaaccga tctcgaagac gctggcccag gatgcgattc gaaacttcgc gaaagaagaa
     3121 gagcctggcg taatcacgat tcagcagatt caaaagttag tcgcgtcgac gtacaagtta
     3181 acggccgacg agttagtttc gaagaacaac gcccgaaaca tctcgcatcc gcggcaagtg
     3241 gcgatgtatc tgtgcaagca tttaacgaag catagttatc cggagatcgg ccgggcgttc
     3301 gggggaaaac atcacaccac
//
LOCUS       DASWTX010000143         1842 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_327262, whole genome shotgun sequence.
ACCESSION   DASWTX010000143 DASWTX010000000
VERSION     DASWTX010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_327262"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            190..831
                     /locus_tag="VGD38_02235"
     CDS             190..831
                     /locus_tag="VGD38_02235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726857.1"
                     /translation="MDRPNENLLSRLEQSLRQSRAARMHLAARLRELEAEADSVRAEL
                     AEMDLLASQTEAAIYRLVSTVLASNNLSFGLPSDAELEAAMHQSHRPANPRSSVYVQP
                     PAYTPPQPQPRPQTPIDRRAQIPTVRDNVEVLSDRFMDRTIPQAVTLLLREEGGPLHV
                     NEIYNRLLEGGFRFTGQNPTISVAVSLNRNTRFRKVAPGTFDLVMRDASSKAS"
     gene            862..1827
                     /locus_tag="VGD38_02240"
     CDS             862..1827
                     /locus_tag="VGD38_02240"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NDP-sugar synthase"
                     /protein_id="HEY0726858.1"
                     /translation="MRAIILSAGYGTRLWPLTEDRTKPAIPILGKPLVGYVAEYIARY
                     GFDDIVVNLHHRPESVRAALGDGSQFGVKLHYVEEPVILGTSGALDNTREFFEHETFL
                     AINGKIITDIDLNAALEQHREMNALATLVLLQNTKRERFSVVETHERRVTAFRGMPDN
                     RCQTPLMFTGIHIFEPRIFDYIPRGVFSDSVVDVYPKAIANGETIAAHVGTGTWRELS
                     TLKRYVDISAEMLKERGEQFTAGKNCTVASTAQVTDSVLWDNVTVSDKARVHHCVLGD
                     SVRVPEGEEIENAVVVRRELVEGKMKPEKAPQGGYLHGENFIVPL"
BASE COUNT          408 a          574 c          503 g          357 t
ORIGIN      
        1 acctgtcgta ctcaacgccg taggcgttcg ctagagcatg gttgtttgcg aacgctttca
       61 gcgttgagtt tctttcccct tttactaacc cagggttgaa gcaaccctgg gctgaaacta
      121 gccaacgcct tcggcgtgta agcggaattt tgttgtctaa aaacccaaac gcctctagaa
      181 tttgccgcga tggataggcc aaacgagaac ctgctgtcac gccttgaaca gagcctgcgc
      241 cagtcgcgtg cggcgcgcat gcatctggcc gcgcggctgc gggagctcga agccgaggcc
      301 gacagcgtcc gggccgaact cgcggaaatg gatcttctgg cgagccaaac ggaggccgcg
      361 atctaccggc tcgtctcgac cgtgctcgcg tcaaacaacc tgtcgtttgg tttgccgtcc
      421 gatgcggagc tcgaagccgc gatgcaccag tcgcaccggc cggccaatcc gcgttcatcc
      481 gtgtacgttc agccacccgc atacacgcca ccgcaacccc aaccgcgtcc gcaaacaccg
      541 atcgatcgcc gcgcacagat ccccacggtc cgcgacaacg tcgaggtgct gagcgatcgc
      601 ttcatggacc gcacgatccc gcaagcggtc acgctgttgc tgcgcgagga aggtggacca
      661 ctgcacgtca acgaaatcta caaccgcctg ctcgaaggcg gcttccgttt caccggacaa
      721 aacccgacca tcagcgttgc cgtctccctc aatcgcaaca ctcgctttcg caaagtcgcc
      781 cccggtacat tcgacctcgt catgcgcgac gcgtcgtcca aggcttcata ggccacggat
      841 gagcccgttg attcccaaaa catgcgcgcg ataatccttt cggccggcta cggcaccagg
      901 ctctggccgc tcaccgaaga tcgcaccaag cccgcgatcc cgattctcgg caaaccgctc
      961 gtcggttacg tcgcggagta cattgcacga tacggcttcg acgacatcgt cgttaacctg
     1021 catcaccggc cggaatcggt gcgtgcagca ctcggcgacg gcagccagtt tggcgttaag
     1081 cttcactacg ttgaagagcc cgtaatcctc ggcaccagcg gcgcactcga caacacgcgc
     1141 gagtttttcg aacacgaaac gtttctcgcc atcaacggca agatcatcac cgacatcgat
     1201 ctcaacgccg cgctcgaaca acaccgcgag atgaacgcgc tcgcgacact cgtgctgttg
     1261 caaaacacaa agcgcgaacg tttcagtgtg gtggaaaccc atgaacggcg cgtcacggct
     1321 ttccgtggta tgcccgacaa cagatgtcag acgcccttga tgttcaccgg cattcacatc
     1381 ttcgagccga gaatttttga ttacatcccg cgcggcgttt tttctgactc ggtggtcgat
     1441 gtttacccga aagcgatcgc gaacggcgaa acgatcgcgg cgcacgtcgg caccggcacg
     1501 tggcgcgagc tttcaacact caaacgctac gttgatatca gcgccgagat gttgaaagag
     1561 agaggcgaac agttcactgc gggaaagaat tgcaccgtcg ctagcaccgc gcaggttact
     1621 gattcagttc tgtgggacaa cgtgacggtg agtgataaag cgcgagttca tcactgtgtg
     1681 ctgggtgaca gtgttcgtgt gcccgaagga gaagagatcg aaaacgcggt ggtggtgcgg
     1741 cgcgagctcg tcgaaggcaa aatgaaaccg gaaaaagcgc ctcaaggagg ttatcttcac
     1801 ggcgaaaact ttatcgttcc cttgtgatac aatcccccgt cc
//
LOCUS       DASWTX010000144         1714 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_23806, whole genome shotgun sequence.
ACCESSION   DASWTX010000144 DASWTX010000000
VERSION     DASWTX010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1714)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1714)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1714
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23806"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(62..766)
                     /locus_tag="VGD38_02245"
     CDS             complement(62..766)
                     /locus_tag="VGD38_02245"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEY0726859.1"
                     /translation="MSISTARQRLIEYLGASLLLGMVAAIAMLVFLGWLTDEVLEGDA
                     RRFDDATRAAVHTIASPAMTSFAHFLSFIGGTLFLTIATGVVIVIFALRKWGREARLF
                     ALTMIGAALLNITLKLAFKRARPVPFFDLAAPATYSFPSGHSLASCCFFAGLAAILSG
                     RVKRKRVRTLIWIAASVMFLLIGLSRIYLGVHYTTDVIAGFASALVWIVVVRFVELQL
                     ARRKQRKATRVVLSSD"
     gene            807..>1714
                     /locus_tag="VGD38_02250"
     CDS             807..>1714
                     /locus_tag="VGD38_02250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726860.1"
                     /translation="MAKKLRRRTFLQTLGSAAVVSALPGIVKAQAKRVAVFRETEPPW
                     RHEFDFSLSGPLTFLTEQELIARLNARDFDLFINPYGGAFPRLAFNVILKFLQDGGNW
                     LNLGGVPLSVPMLRSRSGGWPTLPYQTAFHKRLGITHFFPVEGRKIVKYQSAHEELSR
                     NFKADVVFELYVRLSSTSNEPDEAGSDGPHEGVVEPLVSGLNAEGRAIAAPIIQIDRH
                     QGEFKGGRWIFANFGGSLTANAVKFLIDRASQGAVRFRVRSDFACYRAGEVPAISVEG
                     VNSYNVEVRDPSGQVIRDLKQIVKPG"
BASE COUNT          374 a          462 c          521 g          357 t
ORIGIN      
        1 gagaacgcaa aagatggcgg gctttcagtc gagttacgct tgaacctttg attcaagaag
       61 tttagtctga actcagaacg actcgtgtcg ctttccgttg ctttcgtctc gctaactgca
      121 actcgacaaa cctcacgaca acaatccaaa ccagcgccga agcgaacccc gcgattacgt
      181 cggtcgtgta gtgaacgccg agatagatcc gcgagagacc gatgagcagg aacatcaccg
      241 acgccgcgat ccagatcaac gtgcgcacgc gttttcgttt gacgcgtccc gaaagaatcg
      301 cagcgagccc ggcaaagaag cagcaactag cgagtgagtg tccgctcgga aaactgtacg
      361 tcgccggcgc agcgagatcg aaaaacggga ccggccgagc gcgtttgaac gcgagtttca
      421 gcgtgatatt caacagcgcg gcgccgatca tcgtgagcgc gaagagccgt gcttcgcggc
      481 cccacttgcg cagcgcgaag atcacgatca cgacacccgt cgcgatcgtg agaaagagcg
      541 tcccaccgat aaacgaaaga aagtgcgcga agctcgtcat tgcgggcgag gcaatggtgt
      601 gaactgcggc gcgcgtcgcg tcgtcgaagc gccgcgcatc gccttcgagc acctcgtcgg
      661 tgagccaacc gaggaagacg agcatggcga tcgccgccac cattccgagc agcagcgaag
      721 caccgagata ttcaattagt cgctgtctgg ccgtcgaaat agacatacgc acctgcgcgc
      781 tagtgtaata tggtccgcgt ctatccgtgg ccaaaaaact tcgacgacga actttcctgc
      841 aaaccttggg cagcgccgct gtcgtcagcg cgctgccggg cattgttaag gcgcaagcga
      901 agcgcgtcgc cgtgtttcgc gaaaccgaac ctccgtggcg tcatgagttt gatttctcgc
      961 tcagcggacc tctgactttt cttaccgaac aggagttgat cgcgcggctc aacgcgcgcg
     1021 atttcgacct gttcatcaat ccgtacgggg gcgcgtttcc gcgcctcgcg ttcaacgtaa
     1081 tcctcaagtt tctacaggat ggtggcaact ggctgaatct cggcggcgtg cctttgtcgg
     1141 tgcctatgct gcgcagtcgt tcggggggtt ggcccaccct gccttaccag actgcttttc
     1201 acaagcggct cggcatcacg catttctttc ccgtcgaggg gcgcaagatc gttaagtatc
     1261 aaagcgctca cgaagagctg tcgcgtaatt tcaaagcgga cgtagtgttc gagttgtacg
     1321 tgcgtttgag ctcgacgagc aatgaacctg acgaagcggg tagtgatggg ccacacgaag
     1381 gcgtggtcga gccgctggtg tcgggattga atgccgaggg acgtgcgatc gcggcgccga
     1441 tcattcagat cgatcgtcat cagggtgagt tcaaaggcgg gcgttggatc tttgcaaact
     1501 tcggcgggtc gctcacggcg aatgcggtga agtttttgat tgaccgggct tcgcagggtg
     1561 cggttcggtt tcgtgtaagg agtgattttg cgtgttatcg agcgggtgaa gtgccggcga
     1621 tttccgtaga gggtgtgaac agctataacg ttgaggttcg tgatccgtca ggccaggtga
     1681 tcagggattt aaagcagatc gtaaaaccgg gatt
//
LOCUS       DASWTX010000145         1539 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_23834, whole genome shotgun sequence.
ACCESSION   DASWTX010000145 DASWTX010000000
VERSION     DASWTX010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1539
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23834"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..189)
                     /gene="secG"
                     /locus_tag="VGD38_02255"
     CDS             complement(<1..189)
                     /gene="secG"
                     /locus_tag="VGD38_02255"
                     /inference="COORDINATES: protein motif:HMM:TIGR00810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEY0726861.1"
                     /translation="MLTYILYGLFVLACLILIVVILLQPGKADAGALFSNTLSSTAFG
                     PRGTASLLAKITIGAAAAF"
     gene            complement(298..1056)
                     /gene="tpiA"
                     /locus_tag="VGD38_02260"
     CDS             complement(298..1056)
                     /gene="tpiA"
                     /locus_tag="VGD38_02260"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF012349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEY0726862.1"
                     /translation="MRKPVIAGNWKMYKTLSESVDTALALKPLVANANHCEVVIAPVF
                     TALKTVCDRLEGSNVKVSAQDCSTEKEEGAHTGEVAAFMLRDVGARYVIVGHSERRQF
                     YSETDELVNRKVQAGLAAGLTVIMCVGETLAQREEGNAENVVSTQLVGGLSGLTASDL
                     DRIIVAYEPVWAIGTGRTATPEQAQEMHAFIRRVFADRHSSDAANALRILYGGSVKPD
                     NIQGLMAQADIDGALVGGASLKADSFAQIVNYRS"
     gene            complement(1092..>1539)
                     /gene="pgk"
                     /locus_tag="VGD38_02265"
     CDS             complement(1092..>1539)
                     /gene="pgk"
                     /locus_tag="VGD38_02265"
                     /inference="COORDINATES: protein motif:HMM:NF012389.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEY0726863.1"
                     /translation="AEEKRIEFLLPTDHQVVDSYEPVKGDKIVTKTIPIEFTNLGLAG
                     MDIGVETVAHFSAALQDAKMIIWNGPMGVFEEPPFDEGTIGVAKAVAEAADRGATVIV
                     GGGDSVSAVTRAGVADRITHISTGGGATLEFLAGDPLPGVEALSDK"
BASE COUNT          339 a          482 c          400 g          318 t
ORIGIN      
        1 aaacgccgcc gcggcgccga tcgtgatctt cgccaacagg ctcgccgtgc cgcgcgggcc
       61 gaaggccgtg ctcgagagcg tgttggagaa caacgcgccc gcgtcggctt tgcccggttg
      121 cagcaggatc accacaatca ggatcaggca cgcgagaaca aacagtccgt aaagaatata
      181 agttaacaag tcaaaaatgc tccgtaagga tccgtaaacc taagtaacga gatactcggt
      241 aacgctcgca agcgccagac cattcaaaag ggatctaaac ccgatttcaa aagggaccta
      301 actccgatag ttaacaatct gcgcgaaact atccgctttc aaactcgcgc cacccaccaa
      361 cgcgccatcg atatccgcct gcgccatcaa accctgaatg ttatcgggct tcactgaacc
      421 gccgtagagg atccgcaacg cgtttgccgc gtctgaagag tgcctatccg cgaaaacgcg
      481 ccggataaac gcgtgcattt cctgcgcttg ctccggcgtc gctgtgcgtc ccgtgccgat
      541 ggcccaaacg ggctcgtagg cgacgatgat acggtcgaga tctgaggctg tcaacccgct
      601 aagcccgcca actaactgtg ttgacacgac attttccgcg ttcccctcct cgcgctgtgc
      661 gagcgtttcg cccacgcaca tgatgaccgt cagccccgcg gcaagccccg cctgaacctt
      721 gcgattcacc agttcgtcgg tctcggagta gaactggcgc cgctccgaat ggccaacaat
      781 cacatacctg gcgccgacgt cgcgcagcat aaacgccgcg acttcacctg tatgcgcgcc
      841 ttcttccttc tcggtcgaac agtcctgggc tgagactttt acgttcgagc cttcgaggcg
      901 atcgcaaacc gttttcagcg cggtgaagac aggcgcgatg acgacttcgc agtggttcgc
      961 gtttgcgacc agtggtttca acgccagcgc ggtgtcgacc gactcgctga gcgttttgta
     1021 cattttccag tttccggcga ttacaggttt gcgcatgttt tagacaggga ttaaaaccgg
     1081 attttaaaaa cctatttatc ggataaagct tcgacgccgg gcagcggatc gcctgccagg
     1141 aactccaagg ttgcgccgcc gccggttgag atgtgcgtga tgcgatcggc gacgccggca
     1201 cgcgtaactg cagacacaga atcgccgccg ccaacgatca ctgtcgcgcc acggtccgcg
     1261 gcttcggcaa cggctttagc gacaccgata gtcccttcat caaacggcgg ctcttcaaac
     1321 acgcccattg gaccattcca gatgatcatc ttcgcgtcct gaagcgcggc cgagaaatgc
     1381 gcgaccgtct caacgccgat gtccatcccc gcgagcccca ggtttgtaaa ctcgatcgga
     1441 atcgttttgg ttacgatctt gtcacctttg acgggctcgt aactgtcaac tacctgatgg
     1501 tccgtcggca acagaaattc aattctcttc tcttccgca
//
LOCUS       DASWTX010000146         3516 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_305477, whole genome shotgun sequence.
ACCESSION   DASWTX010000146 DASWTX010000000
VERSION     DASWTX010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3516
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_305477"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1646)
                     /locus_tag="VGD38_02270"
     CDS             complement(<1..1646)
                     /locus_tag="VGD38_02270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726864.1"
                     /translation="MTVSLLLALLVTLSGTIATYLYDDNATLGARLCSGVCLGLAALG
                     LAGFVVASVIGLSGVAVLLSAAICCSPLALITDATISRRFKQDLQNALRTAGNPGAKT
                     IGYFLFYLVIGLVFWKVFDRAVIEDNGGISTGLLNNFGDLPFHISVITSFAYGNNFPP
                     EDPTYAGVRFTYPFISDFVSSMFLRCGADLRQSMFVENYLLAISFIGLVHRWALEMLR
                     DRLAAAITPLIVILSGGLGWVLLFDQAGADEGGLWGALMNLAPSFTVIPETTWRWGNA
                     ISALLVPQRGFLMGLPLAVLAFTQWWLATEKETPKPAERTKKKGHQVAKEPEPARFPI
                     SQRRMIAAGVAAGLLPLVHAHSFVVVMGMAACLALLFVRWRDWITFFVVASAIAVPQL
                     AWSTWNSAVNAGTFFAFELGWDRGQDNPIWFWFKNTGFFIPLILAAVLYKSDGFLVRR
                     RLLLFYLPFTLCFIIPNFVKMAPWIWDNIKVLYYWWLASAPLVALLLSKLWQQGPIRK
                     VVAVILFVVVTLAGALDVASITLRAPKFEIFSSDGLAFAK"
     gene            1765..2865
                     /gene="ychF"
                     /locus_tag="VGD38_02275"
     CDS             1765..2865
                     /gene="ychF"
                     /locus_tag="VGD38_02275"
                     /inference="COORDINATES: protein motif:HMM:TIGR00092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEY0726865.1"
                     /translation="MLRAGIVGLPNVGKSTLFNALTAQQSALAANYPFATIEPNVGVV
                     SVPDERLEPLARLVKTEVIVPATVEFLDIAGLVRGASKGEGLGNQFLANIRETDTVVQ
                     VVRCFEDEGVIHVEGAVDPVRDIETIQIELALADLATVERRREKAQKSMKSGDKTARA
                     ELDVLDKIQPALEAGRSARTVDLTADERAVARNFFLLTTKPTIYAANVDENTLATADE
                     NKMVAAVREIAAQEAAECVVICAQLESELVALPPAERLDYLNSLGVSTSGVDQLIKSA
                     YHLLGLMSFLTAGEKEVRAWTIPQGTRAQTAAGTIHSDIERGFIRAEVITYNDLMSAG
                     SYAVAREKGLLRLEGKDYIMQEGDVVHFRFNV"
     gene            complement(2915..3418)
                     /locus_tag="VGD38_02280"
     CDS             complement(2915..3418)
                     /locus_tag="VGD38_02280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726866.1"
                     /translation="MERRLDRIERLLVLFIKAGDRERREWRKQSREQTEMIKMVIDAH
                     IKGSDRIDKMAARADEWLQEQRIAYALRNEQMDKVAARADEWIREQRIAHALRTEEMD
                     KLRIAQDRTDKHVDKLQAGQVALQEGQAKLDQVMAELAEEHKATERSLQALLDGLQKG
                     QNGKPPT"
BASE COUNT          816 a         1022 c          996 g          682 t
ORIGIN      
        1 aacttcgcaa acgcgagccc gtccgagctg aagatttcaa acttcggcgc gcgcaaagtg
       61 atactcgcga cgtcgagcgc gcccgcaagc gtgacgacga cgaacaaaat caccgccacg
      121 accttgcgaa tcggaccctg ttgccaaagc ttcgacagca gcaaagccac cagcggcgcc
      181 gaagcgagcc accaataata gaggaccttg atgttgtccc aaatccacgg cgccattttc
      241 acgaagttcg gaataatgaa gcaaagcgtg aacggcaaat agaacaaaag cagccggcgg
      301 cgcaccagaa aaccgtcact cttgtagagc acggccgcga ggatcagcgg aatgaagaag
      361 ccggtgtttt tgaaccagaa ccagatcgga ttgtcctggc cgcgatccca acccaactca
      421 aacgcgaaga aggtgccggc gttgaccgcg ctgttccagg tcgaccacgc caactgcggc
      481 accgcgatcg ccgacgccac gacgaagaac gtgatccagt cgcgccagcg aacgaagagc
      541 agcgcgaggc acgcggccat tcccatcacg acgacaaaac tgtgcgcatg gaccaacggc
      601 aacaacccgg cggcaacgcc cgcggcgatc atgcggcgtt ggctgattgg gaaacgcgcc
      661 ggttccggtt ctttcgctac ctgatgacct ttcttctttg tgcgttcggc gggtttcgga
      721 gtttcctttt cagttgcgag ccaccactgc gtaaacgcga gcaccgccag cggaagaccc
      781 atcaggaacc cgcgctgcgg gacgagtagt gccgagatcg catttcccca acgccacgtg
      841 gtttccggaa tcaccgtgaa cgacggcgcc agattcatca acgcgcccca gagcccgccc
      901 tcgtccgcgc ctgcctggtc aaacaacagg acccagccga gaccgccgct cagaatcacg
      961 atcagcggcg tgatggctgc cgcgagtctg tcgcgcaaca tctcgagcgc ccagcgatgg
     1021 accaggccga tgaacgaaat cgccagcagg tagttttcga caaacattga ctgccgcagg
     1081 tccgcaccgc agcgcaggaa catcgacgag acgaagtcgg agatgaacgg ataagtaaac
     1141 ctgacgccgg cgtaagtcgg atcttccggt ggaaagttgt tgccgtacgc aaagctcgtg
     1201 atcacgctga tgtgaaacgg tagatcgccg aagttgttga gcagtcccgt gctgatcccg
     1261 ccgttgtctt cgataacggc gcggtcaaac actttccaga agaccagccc gatcacgaga
     1321 taaaacaaaa aataaccgat cgttttcgca ccgggattgc ccgctgttcg caacgcgttc
     1381 tgaagatctt gtttgaaccg tctactgatc gtggcgtcgg taatgagcgc gagcgggctg
     1441 caacagatgg cggcgcttag caaaaccgca acaccgctca agccgataac cgaagcaacg
     1501 acgaacccgg cgagaccgag cgccgccagc ccgaggcaga cgccggaaca cagtcgcgcg
     1561 ccaagcgtcg cgttgtcgtc gtaaaggtac gtggcgatgg tgccgctaag agtgacgagt
     1621 aacgccagta gaagagagac agtcatcagt cggaagccgc ttgcggtcgc aagttatttt
     1681 gggattatac cgagatcgac ctgctttgca tcaccgcgcg tgatcggtta gttttctcgc
     1741 acgacataaa cagagagcaa acagatgtta agagcaggaa tcgttgggtt acccaacgtg
     1801 ggcaagtcaa cgttattcaa cgcgctgacc gcgcaacagt cagcgctggc ggcgaattat
     1861 cctttcgcca cgatcgagcc gaacgtgggt gtggtttccg tgcctgacga acgtttggaa
     1921 ccgctcgcgc ggctggtgaa gaccgaggtg atcgtgccgg cgacggtcga gtttctcgac
     1981 atcgccgggc tggttcgcgg cgcttcgaag ggcgagggtt tgggaaacca gtttctcgcc
     2041 aacattcgcg agacggacac cgtcgttcag gtcgtgcgct gttttgaaga tgagggcgtg
     2101 attcacgtcg agggcgcggt cgatccggtt cgcgatattg aaacgattca gatcgaactg
     2161 gcgctggcgg atctggcgac tgtcgaacgc cgccgtgaga aagcgcagaa gagtatgaag
     2221 agtggcgaca aaaccgcgcg cgccgagctc gacgtgctcg acaagattca acccgcgctc
     2281 gaggcgggaa gatccgcgcg cacagtggat ttaactgctg acgaacgagc cgttgcgcgt
     2341 aacttctttt tgttaaccac gaagccgacg atttacgccg ccaacgtcga cgagaacacg
     2401 ctcgcgactg cggacgaaaa caagatggtg gcggcagtgc gagagatcgc ggcgcaggaa
     2461 gctgcggagt gtgtcgtcat ctgcgcgcag ctcgaatcgg aactcgtcgc actgcctccc
     2521 gcggaacggc tcgactatct aaacagcctc ggcgtctcga ccagcggtgt agaccaatta
     2581 ataaagagcg cgtatcacct gctcggcctg atgtcgtttt tgactgccgg cgaaaaagaa
     2641 gttcgcgcct ggaccatccc tcaaggcaca cgcgcccaaa ccgcggccgg caccatccac
     2701 tccgacatcg aacgcggctt catccgcgcg gaagtgatca cctacaacga cctgatgtcc
     2761 gccggttctt atgcagttgc gagagagaaa ggcctacttc gtttggaagg caaagactac
     2821 atcatgcagg aaggcgacgt agtccacttt agatttaacg tgtgaaaagg ccacgtttca
     2881 gtgcgaacga tgcgaatcta acttacaccg cacatcaagt cggcggtttc ccattctgac
     2941 ccttttgcag accatcgagg agagcctgta gcgaacgttc cgttgctttg tgttcttcag
     3001 cgagttcagc catcacctga tcaagcttgg cttggccctc ttgaagcgct acttgaccag
     3061 cttgaagctt gtctacgtgt ttatcggtcc tgtcctgcgc aattcgcagt ttatccattt
     3121 cttcggtacg caaggcgtga gcaattcgct gctcccgaat ccactcgtcc gccctggctg
     3181 ctactttatc catctgctcg ttgcgtaagg cgtaagcaat tcgctgctcc tgcagccact
     3241 cgtccgccct cgctgccatt ttgtctatac ggtcgctgcc cttgatatgt gcgtcgatta
     3301 ccatcttgat catttcggtc tgctcacgcg attgtttgcg ccactctcgg cgttcgcggt
     3361 cgccagcctt gatgaacaaa actaataagc gctcgatgcg atcgagccgt cgttccatgt
     3421 tcatatatct cttccttcag gtgaggtgaa aaatcggagg gatgatctca caagagggag
     3481 ggacggtcaa tcccgagatg ccagaaacgc gaagtg
//
LOCUS       DASWTX010000147         2315 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_110583, whole genome shotgun sequence.
ACCESSION   DASWTX010000147 DASWTX010000000
VERSION     DASWTX010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2315
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110583"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..633)
                     /locus_tag="VGD38_02285"
     CDS             complement(<1..633)
                     /locus_tag="VGD38_02285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726867.1"
                     /translation="MRQNSSREWFPLLLLVVGLFFAAPASAQQACFTSAERARAEQTA
                     KVYRTPDPGYDPVLGYNPANGPRAGAPPVDESGRAKPINCVANKDESPGAGTTPKFHC
                     SVQGVTDEEGQLVRYKVKPHFKGQSPDKRNGEIYGEFLSSRFSQALGFFADDEWVADV
                     TCPDCEKSLTRSFQGASFSPFQPAAGIELALAKGIDVTCNNKDSGSLAESL"
     gene            801..2015
                     /locus_tag="VGD38_02290"
     CDS             801..2015
                     /locus_tag="VGD38_02290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726868.1"
                     /translation="MLEFPRWHKRCPSEDIMRYRFLNIPLMVALIVTAGVSTSARTFP
                     LEKITRGTQEFFGTVSYDVEKAYAGNHNLEVTVSLNTKGTTNLELLRFEPPDQAKIRF
                     TQISKVENMDSATGIQTTEYKYLADIPDDVEPRIYLITIAFAYPGDKNLNRTFWLYSG
                     VRNKGKLNVVTDDVSTTEFYTGTTNKYRIELENNFPDYQANIRSITIKSDPLGLIQST
                     TAPIEDLSIDPLQRGSIEVDLKTAPMSFSNLLSGFSDSNRLILHITYDDGYGHVVTDL
                     IHPVKIKVKPRDRILILAMFFGVVIGAILKCYLQRLQQQGVITRREVVLAVGITSLIG
                     LVVSFVAVVGRIKIIAFDQMGSYDNPAVIFVIGLAGAVGGAQLLSTFFKTSTTQAPPA
                     ATPATATAKTAS"
     gene            2025..>2315
                     /locus_tag="VGD38_02295"
     CDS             2025..>2315
                     /locus_tag="VGD38_02295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726869.1"
                     /translation="MKLLKTFFLVCLICFLTITALAQKPSKQGGLGADKALSLGDFYY
                     RSNDISDAADRYYQQAIRNSPGSQTAGHAQYNRGSYWFRKYYVVKEQYSKEDR"
BASE COUNT          539 a          726 c          571 g          479 t
ORIGIN      
        1 gagtgattcg gcgagcgagc cggagtcctt gttgttgcag gtgacgtcga ttcccttcgc
       61 gagtgcaagc tcgatgcctg cggccggctg gaacggcgaa aaacttgcgc cctgaaaact
      121 gcgcgtcaaa ctcttctcgc agtcaggaca cgtaacatcc gcgacccact cgtcatcggc
      181 gaaaaacccg agcgcttgcg aaaagcgcga cgacaaaaac tcgccgtaga tctcgccgtt
      241 tcttttatca ggcgactgtc ctttgaagtg cggtttgact ttgtaacgta ccaactggcc
      301 ctcttcgtca gtcacgccct ggacagaaca atgaaacttc ggcgtcgtgc ccgcgcccgg
      361 cgactcgtcc ttgttggcga cgcaattgat cggcttcgct cggccgctct cgtcaaccgg
      421 cggcgcaccg gcacgcggcc cgtttgccgg gttgtaaccg agcacagggt cataacccgg
      481 atcgggcgtt cgataaacct tggcagtctg ctcggcgcgc gcgcgttcag cggacgtgaa
      541 acacgcctgt tgcgcactgg ccggcgcagc gaaaaagagt cccaccacga gaagcagaag
      601 cgggaaccac tcccgagatg aattctggcg cattgttctt tgtactcccc aatttgaact
      661 ctacgaggtt caacaagata gcatctttgc gagtttttac ggaaaggagc aagcctctca
      721 acaattgttc acacaccctg tctttgattg ttcacacgtt cgacttacct cgcagccgcg
      781 aaaagctaaa acagttcgaa atgctcgaat ttccacgctg gcacaaacgt tgcccaagcg
      841 aggacatcat gcgttaccgt ttcctcaaca tccccctcat ggtcgccctc atcgttacgg
      901 ccggcgtaag cactagtgcc cggacttttc cgctcgagaa gattaccaga ggcactcagg
      961 aatttttcgg caccgtctcc tacgacgtcg aaaaggctta cgccggcaac cacaatctcg
     1021 aggtcacagt ctccctcaac accaaaggca ccacgaacct cgagctgctc aggtttgaac
     1081 ctcccgacca ggccaagatc cgatttaccc agatcagcaa ggtagaaaac atggattccg
     1141 ccaccggaat tcaaactacc gaatacaagt acctggccga tattcccgat gacgtcgagc
     1201 cgagaatcta cctcatcacg atcgcgttcg cttaccccgg cgacaaaaac ctcaatcgaa
     1261 ctttctggct ctattccggc gtgcgcaaca aaggcaagtt gaacgtcgtg accgacgacg
     1321 tcagcacgac cgagttttac acgggcacga caaacaagta ccggatcgag ctcgaaaaca
     1381 acttccccga ttaccaggca aacatccgct ccatcaccat caagtcagac ccactgggac
     1441 tcattcaaag caccacggcg ccgatcgaag acctcagcat cgacccgctt cagcgcggtt
     1501 ctatcgaagt cgatctgaaa accgcgccga tgtcgttcag taatctcctc agcggtttca
     1561 gcgattcaaa ccgcctgatc ctgcacatca cttacgacga tggttacggc cacgtcgtta
     1621 cggacctcat tcatccggtc aagatcaagg tgaagccgcg cgatcgaatc ctcatcctcg
     1681 cgatgttctt cggcgtggta atcggcgcga tcctcaagtg ctatctccag cgtctccagc
     1741 aacagggcgt gatcacgaga cgcgaggtcg tgctcgcagt cggcatcacg agcttgatcg
     1801 gtttggtcgt atcgttcgtc gccgtcgtgg gccgcatcaa gatcatcgcc ttcgaccaga
     1861 tgggctcgta cgacaacccc gccgtgatct tcgtcatcgg tctcgctgga gctgtcggtg
     1921 gagcacaact gctttcgacg ttcttcaaga cttccactac ccaggcaccg ccggcggcta
     1981 ctcccgcgac tgccactgcc aaaactgctt cctgaggtca ggccatgaag ttactcaaaa
     2041 cattctttct cgtgtgcctc atctgtttcc tgaccatcac tgcgctggcg cagaaaccga
     2101 gcaaacaagg cggtctcggc gcggacaagg ctctttcgct cggcgacttt tattatcgca
     2161 gcaatgatat cagcgacgcc gccgaccgct attaccagca ggcaatacga aactctcccg
     2221 gatcacaaac cgcggggcac gcccagtaca accgcggcag ttactggttc cgcaagtact
     2281 acgtagtgaa ggagcaatac tcgaaagagg atcgc
//
LOCUS       DASWTX010000148         3550 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_88176, whole genome shotgun sequence.
ACCESSION   DASWTX010000148 DASWTX010000000
VERSION     DASWTX010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3550
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88176"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(25..369)
                     /gene="rbfA"
                     /locus_tag="VGD38_02300"
     CDS             complement(25..369)
                     /gene="rbfA"
                     /locus_tag="VGD38_02300"
                     /inference="COORDINATES: protein motif:HMM:TIGR00082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEY0726870.1"
                     /translation="MHRTERFTDTLREEIAQIVGYELEDPRLTAVTVTDVRLSSDKRA
                     ARVYVTVVGDEEVHKQALNALKHAAPYVRKQLGLSLNLPRTPELHFVRDRVEEQGDRV
                     DQLLREIEEKKE"
     gene            complement(387..3194)
                     /gene="infB"
                     /locus_tag="VGD38_02305"
     CDS             complement(387..3194)
                     /gene="infB"
                     /locus_tag="VGD38_02305"
                     /inference="COORDINATES: protein motif:HMM:TIGR00487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEY0726871.1"
                     /translation="MTVSSKVRIYDLAKELKLDTKRLIEEVRREGVDVSVPSNSVSKE
                     LAEKIRNKYFPKKETTVKRAVKVVKRAVAPTADAPAAEAEAEVHDEPDPVIEVAAPEA
                     EPAELPAATPAAPSVSAPAVSPTAKQPIPARLVKKLTPAARAEAPAPEVVEAPVVEPP
                     PAPAEPPVVQEPIAAAPIEATAAPSNGVEVKAPAPPPPAPPTPPPPSRQVRVLRPTAA
                     ALNAGIRPGERAPAPPPPPPPPQRERVNTTPDRSGRMRERPSLPRNERMGTPGETATP
                     QTTYIPPPDAGRRRSRRSSPRGGRKIEGKAGRFDKGDFIPPPRALSLEDRIAGRLETG
                     SGELKSVRLIEGSTVKEFAEKLGIKPKDVVSLLLQRGVFATINQPLMDDVAADLGRRF
                     GYDVSFVPFEEMVAEEEFEELIAADADDVELPRAPVITVMGHVDHGKTSLLDAIRATD
                     VAAGEAGGITQHIGAYSVQVPSADNPAEMRRVVFLDTPGHEAFTMMRARGAKATDIVV
                     LVVAADDGVMPQTIEAIEHSRAAGVPIIVAINKIDKPDANPDRVKQELAQQGLSPLEW
                     GGETEMVPVSAKKRQNLETLLETILLTSDILNLRASSTRLASGVVLEAKLDRGRGAVA
                     TVLVQQGTLRVHEPFIVGQISGKVRAMFNDRGEAITEAGPATPVEVLGSQGVPQAGES
                     FQVVSDITKAQSISQHRQMLSRQAALLQTTKRGIEALGESEVKELLVIIKADVQGSVE
                     VLKSTLQKLSTDRVKVKVIRSGVGAITESDVLLGSATQAGSSSSAVVIIGFNVRPEAR
                     AADVAKQEAVDIRLHSIIYKVEEEIRAAMIGMLEAIEKEKILGKADVREVFRVPKAGT
                     VAGCMVIDGVVRRNAKARLIRDGVVAWEGNISSLRRFKDDVSEVREGFECGISLENFN
                     DVKVGDQIEAYVVERVAATEL"
BASE COUNT          613 a         1161 c         1022 g          754 t
ORIGIN      
        1 tgagctcaaa cggagcccaa ctagttactc cttcttctct tcaatctctc tcagcaactg
       61 gtccactcga tcgccctgct cctcgacgcg atcgcgtacg aagtgcagct caggcgtgcg
      121 cgggagattc aacgagaggc cgagttgctt ccgaacatac ggcgctgcgt gcttcaaagc
      181 gttcagcgcc tgcttgtgaa cctcttcgtc gccgaccact gtgacgtaaa cgcgcgcggc
      241 gcgtttgtca gacgagaggc gaacatccgt aaccgttacg gcagtcagtc gcgggtcctc
      301 gagttcgtag ccgacgatct gcgcaatctc ctcccgcaac gtatccgtaa atctttccgt
      361 ccgatgcata acgcccgccc cgcagcttag agttccgtcg ctgcgacgcg ctcgaccacg
      421 taagcctcaa tctggtcgcc gactttcacg tcgttgaaat tctccagact gataccgcac
      481 tcgaagcctt cgcgaacttc ggaaacgtca tccttgaacc ggcgcagcga cgagatgttg
      541 ccttcccagg ccacaacacc gtcgcgaatg agccgcgcct ttgcattgcg ccgcacgacg
      601 ccgtcgataa ccatgcaacc cgcgaccgtt ccggctttcg gcacgcggaa cacttcgcgc
      661 acgtctgcct tgccgaggat cttctccttc tcgatcgctt cgagcatgcc gatcatggcc
      721 gcgcgaatct cttcttcgac cttgtagatg atcgagtgga gacgaatgtc gactgcttcc
      781 tgcttcgcga catcagccgc acgcgcttcg ggacgcacgt tgaagccgat gatcacgaca
      841 gccgacgaag acgatccggc ttgcgttgcc gaaccgagca gcacgtctga ctccgtgatc
      901 gcgcccacac cggagcgaat cactttcacc ttcacgcgat cggtcgagag tttttgcagc
      961 gtcgacttca gcacttcgac tgaaccctgc acgtcggcct tgatgatgac gagcagttcc
     1021 ttgacttcgc tttcgccgag cgcttcgata ccgcgcttcg tcgtctgcaa caacgccgcc
     1081 tgacggctca acatctggcg gtgttgcgag atcgactggg ccttcgtgat gtccgaaacg
     1141 acctggaagc tttcacctgc ttgcggcaca ccttgcgagc cgagcacttc gaccggcgtt
     1201 gccggtcccg cttcagtaat cgcttcgccg cgatcgttga acatcgcgcg gaccttgccg
     1261 gagatttgtc ccacgataaa cggctcgtga acacgcagcg tgccctgttg gaccagcacg
     1321 gtcgcaaccg cgccgcgccc gcgatcgagt ttcgcttcga gcacgacacc cgatgcgaga
     1381 cgcgtcgagc tggcgcgcaa gttcagaatg tcagacgtca acaggatggt ctcgagcagt
     1441 gtctcgaggt tctgccgttt cttcgccgac accggcacca tttccgtttc gccgccccac
     1501 tccagtggcg acagtccctg ttgggccagt tcctgtttga ctcgatcggg attggcgtcg
     1561 ggtttgtcga tcttgttgat ggccacgatg atcggcacac ccgctgcgcg cgagtgttcg
     1621 atcgcttcga tcgtctgcgg catcacgccg tcgtcagcgg cgactacgag cacgacgatg
     1681 tcggtcgcct tcgcaccgcg cgctcgcatc atcgtgaacg cttcgtgacc cggcgtgtcg
     1741 agaaacacca cgcgccgcat ctcggcaggg ttatcagcac tcggcacctg cacgctgtac
     1801 gcgccgatgt gttgtgtgat accgccggcc tcgcccgcag ccacgtcagt ggcgcgaatc
     1861 gcgtcgagca gtgaagtctt accgtgatcg acgtggccca tgacggtgat caccggcgca
     1921 cgcggcagtt ccacgtcgtc ggcgtcggcc gcgatcagct cctcaaactc ttcttccgca
     1981 accatctctt caaacggcac gaaagaaacg tcgtaaccaa atcgtctgcc gagatcggca
     2041 gcgacgtcgt ccatcaacgg ttgattgatc gtcgcgaaga cgccgcgttg cagcagcagc
     2101 gacacaacgt ccttcggttt gataccgagc ttctcggcga attccttcac cgtcgaacct
     2161 tcgatcaaac gtaccgactt caactcaccc gagcccgttt ccaaacgccc ggcaatgcgg
     2221 tcttcgagcg acaacgctcg cggcggtgga atgaaatcgc ccttgtcgaa cctgccggcc
     2281 ttgccttcga tcttcctgcc gccgcgcgga ctgctgcgcc gtgaacggcg tcgacccgcg
     2341 tccggtggtg gaatgtaagt cgtctgcggc gtggcggttt cgccaggcgt gcccatgcgt
     2401 tcgttgcgcg gaagcgaagg acgctcgcgc atacggccgc tgcgatcggg cgtggtgttc
     2461 acacgctctc tttgcggcgg cggaggcggt ggcggcggag caggcgcgcg ctcgccgggc
     2521 ctgatgcccg cgttgagcgc cgcggccgtg ggccgcaaaa ctcttacctg tctcgatggt
     2581 ggcggcggag tcggtggcgc cggcggcggg ggagctggtg ctttcacttc gacgccgttg
     2641 ctcggcgcgg cagtcgcttc gattggcgcc gcggcgatcg gttcctggac cactggcggt
     2701 tcggccggcg ccggcggcgg ctcgacaact ggcgcttcga cgacttccgg agccggagct
     2761 tccgcgcgcg cggccggtgt cagtttctta accagacgcg ccgggatcgg ctgcttcgct
     2821 gttggcgaaa cggcgggcgc agaaacagac ggcgcagccg gcgtggctgc gggcaattcc
     2881 gcgggttcgg cctctggcgc cgccacctca atgaccgggt ccggctcgtc gtgaacttcc
     2941 gcctcggctt cagccgcagg ggcgtcggct gttggcgcta cggcacgctt cacgactttg
     3001 accgcgcgtt tgaccgtcgt ctctttcttc ggaaaatact tgttccggat tttctcggcc
     3061 agctctttgg agaccgagtt tgacggcaca ctcacgtcga cgccttcacg gcgcacctct
     3121 tcaatgagtc gcttcgtgtc gagctttagt tctttggcga gatcgtagat gcgaactttc
     3181 gaggaaactg tcatgcactc cttctcgacg cttcgaggcg tcctgaaacg acctataggt
     3241 gattaggaac tcgctcgttc ctaaccactt cgaaagcgtc gatcagaagt tcaacgcgtg
     3301 acagtagcgg aacgggtgag acaaacgtcc agagtgaact gaacccttgt tcttcctaat
     3361 tggctgcacc cctggaagca tcactgcttc tcttcatccg tgctcccgcc tgatgcagca
     3421 tcttccgaaa ctgcgggagc cgttgggtct gtttcctcgg tttcgggaac cacctcggaa
     3481 acaaattctt catcagccgc cagtatttcc gccgctacct cttcaacttg atcgagcgcg
     3541 gccacgcccg
//
LOCUS       DASWTX010000149         1680 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_110592, whole genome shotgun sequence.
ACCESSION   DASWTX010000149 DASWTX010000000
VERSION     DASWTX010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1680
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110592"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..204
                     /gene="rplL"
                     /locus_tag="VGD38_02310"
     CDS             <1..204
                     /gene="rplL"
                     /locus_tag="VGD38_02310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017150119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEY0726872.1"
                     /translation="FTVNLTAAGANKVNVIKVVRAVTGLGLKEAKDLVDGAPKPVKEG
                     IAKAEAETIKKKLEEQGAKVEIK"
     gene            267..>1680
                     /locus_tag="VGD38_02315"
     CDS             267..>1680
                     /locus_tag="VGD38_02315"
                     /inference="COORDINATES: protein motif:HMM:NF016450.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726873.1"
                     /translation="MAFQVANNLRFRRSFGRIRKIIDLPYLIEIQKNSYDLFLQKDVA
                     VSERQNMGLQEVFRSVFPIKDFNETSSLEFVSYSLGEPKYDVEECHQRGMTYAAPLKV
                     TVQLVLWDVDQQTGSRSIKNVKEQEVYFGEIPLMTINGTFMINGTERVIVSQLHRSPG
                     VFFEHDKGKTHASGKLLYSARVIPYRGSWVDLEFDPRDILYVRIDRRRKFHATVLLRA
                     LGMTTEDLLNYYYRSDTVVLDGRKASLMFNPSQLLGAKVSADVRDPKSNDIIVKEGKK
                     FTRPILRQMEAAKVKQVPIAFEEILGRVASHDIVDAQTKEVLVECNQEITQEKLDLIR
                     DKGIHQIEVLFIDESSVGPYLRNTLLQDRIKSPQDAILEIYRRLRPGDPPTVESATNF
                     FNNLFFTPDRYDLSKVGRLKLNHRLKLNIPLEQGTLRKEDILEVVRYLMELKNGNGSV
                     DDIDHLGNRRVRAVGELVENH"
BASE COUNT          411 a          417 c          486 g          366 t
ORIGIN      
        1 ttcacggtga acctgaccgc cgcgggcgcg aacaaggtga acgtgatcaa ggtggttcgc
       61 gcggtcaccg gcctcggcct caaggaagcc aaggatctcg tggacggtgc gccgaaaccg
      121 gtcaaggaag gcattgccaa agccgaggcc gaaacgatca agaagaagct tgaggagcaa
      181 ggcgcgaagg tcgaaatcaa ataggttggc gtctggggcg gagtgtctgc tggatcgttg
      241 accgaacgtt tcgataagga gtgtgcatgg cgtttcaagt tgccaataat ctacggttcc
      301 gacggagctt tggcagaatc agaaagatta tcgatctccc ttacttaatc gaaattcaaa
      361 agaactccta cgatctgttc ctgcagaagg atgtggcggt gagcgagcgc cagaacatgg
      421 gcctgcagga agtttttcgc tcggtttttc cgatcaaaga cttcaacgaa acctcgtcgt
      481 tggagttcgt tagttattcg ttaggcgaac cgaaatacga cgtcgaagag tgtcatcaac
      541 gcggcatgac ctatgccgcg ccgctgaaag tgacagtgca gctggtgctg tgggacgtcg
      601 accagcagac cgggtcgcgt agtatcaaga atgtcaaaga gcaggaagtt tactttggtg
      661 agatcccgct catgacgatc aacggcacgt tcatgatcaa cggcaccgaa cgggtgatcg
      721 tcagccagtt gcatcgctcg ccgggcgtat tcttcgagca tgacaagggc aagacgcacg
      781 ccagcggcaa gctgctttac tcggctcgcg tcattccgta ccgcggctcg tgggtggact
      841 tggaattcga cccccgcgat attctctacg tacggatcga ccggaggcgt aagttccacg
      901 ccaccgttct cttgcgtgcg ctcggaatga caacagagga cctcctcaat tattactacc
      961 ggagtgacac tgttgttctc gatggtcgca aagcgtcact gatgttcaat ccgagccaat
     1021 tgctcggtgc gaaggtgagc gcagacgtgc gcgatccgaa gagcaatgac atcattgtca
     1081 aagaagggaa aaagttcacg cggccgattc tgcgccagat ggaggctgcc aaggtaaaac
     1141 aggtgccgat cgcattcgag gaaatcctcg ggcgggtcgc ttcgcacgac atcgtcgacg
     1201 cgcaaaccaa ggaagtgctg gtcgagtgca atcaggagat tactcaggaa aagctcgatc
     1261 ttatccgcga caaagggatt catcagattg aagtgttgtt catcgatgaa tcgagcgttg
     1321 gtccctactt gcggaatacc ctgctgcagg atcggattaa atcgcctcag gatgcaattc
     1381 ttgaaatcta ccggcgtttg cgtccaggcg atccgccgac tgtcgagtcg gcgacaaatt
     1441 ttttcaataa tttgtttttc actccggatc gctatgattt atccaaggtg gggcggctca
     1501 agctgaatca ccggctgaaa ttgaatatcc ccctagagca ggggacactg cgcaaagagg
     1561 acattctcga agttgtccgt tacctgatgg agcttaaaaa cggcaacgga tccgtcgacg
     1621 atatcgatca tttgggtaac cggcgcgtgc gcgctgtcgg cgagttggtt gagaaccact
//
LOCUS       DASWTX010000150         3852 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_305603, whole genome shotgun sequence.
ACCESSION   DASWTX010000150 DASWTX010000000
VERSION     DASWTX010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3852
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_305603"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..415
                     /locus_tag="VGD38_02320"
     CDS             <1..415
                     /locus_tag="VGD38_02320"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0726874.1"
                     /translation="SAATMLAKGLREEAYAVDIAHDGETALAQAFDNDYDLIVLDIVL
                     PGKDGFKVCRELRANGLTAPVLMLTARDAVEDRVEGLDSGADDYLPKPFDFEELLARV
                     RALLRRKPALYPEVITVADLSIHTRTRQVTRGTKH"
     gene            412..588
                     /locus_tag="VGD38_02325"
     CDS             412..588
                     /locus_tag="VGD38_02325"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY0726875.1"
                     /translation="MIIAEHVWDESYDPFSKVIEVFIQRLRRKVDEGQALKLIHTRRG
                     EGYVLTTRETDADD"
     gene            581..880
                     /locus_tag="VGD38_02330"
     CDS             581..880
                     /locus_tag="VGD38_02330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726876.1"
                     /translation="MIDTVRGRLTLWYISSLALILILFGISVYVMLSRALHRRVDEGL
                     RSTIEISITSLTHDTQEGQSPHCRAQSHHSSSRDALHHSRESATQTDRRRTRVAA"
     gene            973..1794
                     /locus_tag="VGD38_02335"
     CDS             973..1794
                     /locus_tag="VGD38_02335"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0726877.1"
                     /translation="MARSARQIGAGSLDQQLPIVNARDDLGQLATTFNDLLARLNSAF
                     EEQRRFMADASHELRNPLSVMSTAAGVTLKKEHRDEEEYREALQIMAEQTRRLSRIVN
                     DMFMLARADAGQYPLRKRTLYLDDLLEDVARAGAVLASDRRASVQLTNLPEAVFHGDE
                     DLLRQMLLNLVDNAVKFTPSDGAVTLSLERRENDYVLSVADAGPGIPAEARQHIFERF
                     YRADGTRTRTEDGGAGLGLAIARWIARAHDGDIELDDSGGAGTKFVVRLPRTNNN"
     gene            1856..2776
                     /locus_tag="VGD38_02340"
     CDS             1856..2776
                     /locus_tag="VGD38_02340"
                     /inference="COORDINATES: protein motif:HMM:NF023695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3616 domain-containing protein"
                     /protein_id="HEY0726878.1"
                     /translation="MKRYVLDLVVILTLTMAVVGMPVGAPHSAMPAPMTAFSGGTFEA
                     SGVAHVAGTDSVLFVDDGRPNEVFLMQVGGDRKQTGAIKTVDIATSIIDLEGITTDGE
                     YFYIVGSQSKSKGADLAGLARFKFDAASQRAVGTEAASGLKKFLADNVAELRGLENTK
                     YNDGGINVEGVAWDPQNKRLLLGLRSPVVDGNALIVPLKLRDTKAAFSFDNLEVEGRK
                     AIRLPLNGAGIRSIEYDDARKAFFLITGAGPNSEKMDFKTWEWSGATELRELETFDRR
                     LKPEGITRFSNGARDFIFIVFDTSGYAATD"
     gene            2817..3500
                     /locus_tag="VGD38_02345"
     CDS             2817..3500
                     /locus_tag="VGD38_02345"
                     /inference="COORDINATES: protein motif:HMM:NF015142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008138 - protein
                     tyrosine/serine/threonine phosphatase activity [Evidence
                     IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dual specificity protein phosphatase family
                     protein"
                     /protein_id="HEY0726879.1"
                     /translation="MRRFRQTVSSAAVVLTLLCATVSAQDAINSTELPRFQQVSEKLY
                     RSGQPRNGGLKRLRELGINTIINLRGASATTRAEEAEARALGFNYFNVALPNWGRPQE
                     KRVARVMELIVAPENGRVLVHCKDGVDRTGTIVAVYRMTHEGWTSEKALDEANRSGMR
                     RTQFWMRDYVEDYGDRVARFGPENALKSPSVDEALDDRIGTGMRFVERGTFRARKAAR
                     GFLRKFPLR"
     gene            3664..>3852
                     /locus_tag="VGD38_02350"
     CDS             3664..>3852
                     /locus_tag="VGD38_02350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726880.1"
                     /translation="MSSFREAPTVGRMLTLDAMRGGAALAVVTYHALGVAPHTAPGGW
                     QWWLPQITSYLVHFAFAGI"
BASE COUNT          818 a         1109 c         1169 g          756 t
ORIGIN      
        1 gagcgcggcc acgatgctcg ccaagggact acgcgaagaa gcttacgccg tagacatcgc
       61 acacgatggt gaaaccgcgc tggcgcaggc gtttgataac gattacgacc tcatcgtgct
      121 cgacatcgtg ttgccaggta aagacggttt caaggtctgc cgcgagttac gcgcaaacgg
      181 tttgacggct cccgtgctga tgctgacagc gcgcgatgcg gtggaagaca gagtcgaagg
      241 actcgactcc ggcgccgacg actatctgcc aaaaccattc gacttcgaag aactgttagc
      301 ccgcgtgaga gcattgctgc ggcgcaaacc cgcgctgtat ccggaagtga tcacggttgc
      361 cgatctgtcg attcacacgc gcacgcgtca ggtgacgcgc gggacaaagc attgatcatc
      421 gccgaacacg tctgggacga atcttacgat ccgttttcaa aagtgattga agtgtttatt
      481 caaaggttgc gccgtaaagt cgacgaaggt caggcgctga aactgatcca cacgcggcgc
      541 ggcgaaggct acgtgctgac gacgagagag acggacgccg atgattgata ctgtcagagg
      601 acgtctcact ttgtggtaca tcagctcgct cgctttgatc cttattttgt tcggcatctc
      661 agtctacgtg atgctttcac gcgcgctgca ccggcgcgtc gacgaggggt tgcgctcgac
      721 gatcgagatc tccatcacgt cgctcactca cgacacgcag gaaggtcaat caccgcattg
      781 ccgtgcgcag agtcaccatt cctccagccg ggacgcctta catcattctc gcgagtcagc
      841 cactcaaacc gatcgaagac gaactcgagt cgctgcgtga agtgctgtat ttcgcggcgc
      901 cggtcgtgct gttgctcgcc gggtttggcg gttggtttct cgcgcgccag ggtcttgcac
      961 cggtgacggg cggtggcgcg aagtgcacgc cagatcggcg ccggcagtct cgaccagcaa
     1021 ctgccgatcg tgaatgcacg cgacgatttg ggccaactcg caaccacgtt caacgacctg
     1081 ctcgcgcgtc tcaactccgc gtttgaagag cagcgccgtt tcatggccga cgcttcgcac
     1141 gaattgcgca atccgctctc ggtgatgagc acggccgcgg gcgtaacgtt gaagaaagaa
     1201 catcgcgacg aggaggagta tcgcgaggcg cttcagatca tggccgaaca aacacgacgg
     1261 ctgtcgcgca tcgtgaacga catgttcatg ctcgcgcggg ccgatgccgg tcagtatccg
     1321 ttacgcaagc gcacgctgta tttggacgat ctgctggaag acgtcgcgcg cgccggcgcg
     1381 gtgctcgctt ccgatcgcag agcgtcggtg cagttaacaa acttgcccga agctgttttt
     1441 catggcgacg aagatctgct gcggcaaatg ctgttgaatc tcgtggacaa cgcggtgaag
     1501 ttcacgccgt ctgacggcgc ggtgacgttg agtctcgagc gtcgcgaaaa cgattacgtg
     1561 ctttcagtgg ccgatgccgg tccgggcatt cccgccgaag cacgccaaca catttttgaa
     1621 cggttttatc gcgcggatgg aacgcggaca cgaactgaag acggcggcgc cggactgggt
     1681 ctggcgatcg cgagatggat cgcccgcgct cacgacggcg acatcgagct ggacgactcc
     1741 ggcggcgccg gaacaaagtt cgtcgtacgg cttccgcgca cgaacaataa ctgactcccg
     1801 caaatcgttc aggcatttac cttgcgttac ctgcgttctg gtaggcttga gcgaaatgaa
     1861 acggtacgtc ctggatttag tcgtaatact gacgctgaca atggccgttg tcggcatgcc
     1921 cgtcggtgct ccgcatagcg ctatgccggc gccgatgacg gccttctcgg gtggaacctt
     1981 tgaagcgtcc ggtgtcgcac acgtggccgg caccgattca gtgttgtttg ttgacgatgg
     2041 ccgcccgaac gaagtgttcc tgatgcaggt cggcggcgat cgcaaacaga ccggcgcgat
     2101 caaaacggtt gatatcgcga cgagcatcat cgatctcgaa ggtattacga ctgacggcga
     2161 atacttctac atcgtcggtt cgcagtcgaa gtcaaaaggc gcggacctcg cgggtctcgc
     2221 gcgtttcaag tttgatgcgg caagtcagcg cgcagtcggc acggaagcgg cttccggact
     2281 caagaaattc ctggcggaca atgttgccga gctccgcggt ttagagaaca cgaaatacaa
     2341 cgacggcggc atcaacgtcg aaggtgtcgc gtgggatccg cagaacaagc ggctgttgct
     2401 cggattgcgt tcgcccgttg tcgacggcaa cgcgttgatc gtgcctttga aactgcgcga
     2461 cacaaaagca gcgttctctt tcgacaacct ggaagtcgaa ggacgcaagg cgatccggct
     2521 gccgctcaac ggcgctggta tcaggagcat cgagtacgac gacgcgcgca aggcgttctt
     2581 tctcataacc ggcgcgggac cgaattccga gaagatggac tttaagactt gggaatggag
     2641 cggcgcgacc gagctgcgtg agttggaaac gttcgatcgc cgtctcaagc ccgaaggcat
     2701 tacgcgcttt tcaaatggcg cgcgagactt tatctttatc gtgttcgaca caagcggata
     2761 cgccgcaacc gactaacaat caaatcactc ctataaaccc ggcagtagag gttcccatgc
     2821 gcaggttccg tcaaacggtt tcttcggcgg cggtcgtgct gacacttctc tgcgcgactg
     2881 tctccgctca ggacgcaatc aactccaccg agttgccccg gttccagcag gttagtgaaa
     2941 agttgtatcg cagtggccag ccgcgcaacg gcgggctcaa acggcttcgc gagctcggca
     3001 tcaacaccat catcaatctc cgcggcgcaa gcgcaacaac cagggcggaa gaagcggaag
     3061 cgcgcgcgtt gggattcaat tacttcaacg tcgcgcttcc gaattgggga cggccgcagg
     3121 aaaagcgcgt cgcacgagtc atggagctga tcgtcgcgcc ggagaacggc cgcgtgctgg
     3181 tccattgcaa agacggcgtg gatcgcacgg gaacgatcgt ggccgtgtat cgcatgacgc
     3241 acgaaggttg gaccagtgaa aaagcgctcg acgaggcgaa ccgctccggc atgcgccgaa
     3301 cccagttctg gatgcgcgac tacgttgaag actacggaga ccgcgtcgcg aggtttggtc
     3361 ccgaaaacgc gctcaagtcg ccgagcgtcg acgaagccct ggacgatcga atcggaaccg
     3421 gcatgcgttt cgtcgagcgc ggaaccttca gagcgcgcaa agccgcccgc gggtttttac
     3481 gaaagttccc gctgcgataa cttccgctgt catcctcacc tacaccactg agtaacacag
     3541 aaaaacacgg actcgcgtcc gcctgttgaa tctgtggctc ggaaatgtag aattcgcgtg
     3601 acgccttgaa cacacatttg gcatctcatg gcgcggccgt gttttcgagc acggatgtcc
     3661 acgatgagca gttttcggga agcacccacg gtagggcgca tgctgaccct cgacgcgatg
     3721 cgaggaggag cggcgctggc agtcgttact tatcacgccc tcggcgtggc gccgcacacg
     3781 gcgccaggcg gatggcagtg gtggctgccg caaatcacct cgtacctggt ccatttcgcg
     3841 tttgccggca tc
//
LOCUS       DASWTX010000151         2640 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_24024, whole genome shotgun sequence.
ACCESSION   DASWTX010000151 DASWTX010000000
VERSION     DASWTX010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2640
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24024"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..798)
                     /locus_tag="VGD38_02355"
     CDS             complement(<1..798)
                     /locus_tag="VGD38_02355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726881.1"
                     /translation="MTGLGSSVRWEVAGPHAAVTLTVAAPDGQVFSKEFAAGTSPEFR
                     LDVKGERLPDGQYTYELRVTPIIGKDVKEKLKAAREKGNSDEVQRDLKRRGALPSRAQ
                     VQFGSFTVTNGVVTVAGSATEGEPVAVNRPVAAPAPAAAAAPSGRTNYKVNRHHPRFM
                     FFDQVIPDDLIVQGSICSGFDCVNNENFGTDTIRVKENNVRIQFDDTSSTAGFATNNW
                     QLRANDQPSGGASFFGIVDQGATGTGETGTIVFAVDAGAPANSLRVSS"
     gene            1132..1824
                     /locus_tag="VGD38_02360"
     CDS             1132..1824
                     /locus_tag="VGD38_02360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726882.1"
                     /translation="MKLIFVLPILLSLLIPYQLPSSNGDSPLVVSNFKWTKARRAVET
                     PPVEGNTPARAMIPQNRNFARNARINDPAGVRDPNADTLDGRSAAMEKSVAESRTAKP
                     KATDGFAYKIKVQNPGTKAVEIVFWEYQFHDPADPSLVARRQFLCGVNIGADKSKELE
                     GFSLSGPGVVNVNTLADKSENPFKEQVLINRVEYADGSIWQRKGWSLNEVKASYERVL
                     REQWVPGMCKGL"
     gene            1833..>2640
                     /locus_tag="VGD38_02365"
     CDS             1833..>2640
                     /locus_tag="VGD38_02365"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:NF013180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEY0726883.1"
                     /translation="MESLEVVKPKLLIIDDEEQIRHLLMDLLGSLYDCCTASSAEEAL
                     AALSEQTFDLVISDIDMGRISGLELVPRVHSLSPDTVVVMISGNQDIEFAIQALRVGA
                     FDYITKPIDLRHVEASVERALKHSELLKEKRRYKEQLEELLQKRTAQVDWLAYYDTVT
                     QLPNRALFEDRLTQACSIAKSNGQSLGVLFISLDQFKKVNDSLGHGPGDGLLREFAER
                     LKSCISKSDTVARFGNDEFALLKTRIDDTNDVIETIGSLSQVLRFSFDLPG"
BASE COUNT          597 a          690 c          775 g          578 t
ORIGIN      
        1 actggacact ctcaacgaat ttgcaggcgc accggcgtct accgcgaaaa cgatcgtgcc
       61 ggtctcaccg gttccagtcg ctccctgatc gacaatgccg aagaaactgg cgccgccact
      121 tggctggtcg tttgctctta attgccagtt gttggtcgca aaaccagccg tgctgctggt
      181 gtcgtcaaac tggatacgca cgttgttttc tttgacgcgg atggtgtcgg tgccgaagtt
      241 ttcgttgttg acgcaatcga agccggagca gatgcttcct tgcacgatca gatcgtcagg
      301 aatgacctgg tcgaaaaaca taaaccgggg gtgatgccga ttgaccttgt agttggttcg
      361 tccggaagga gctgccgctg ctgccggcgc tggcgctgcg acgggtcgat tcacagccac
      421 gggctcgcct tcagtagctg agccggcaac ggttacgacg ccgttggtga cggtgaaact
      481 tccgaattga acctgcgcgc gcgatggcag tgcgccgcgg cgtttcaggt ctcgttgaac
      541 ttcgtcagaa tttccttttt cccgcgcggc tttcagtttt tctttgacgt ccttgccgat
      601 gatgggcgtc acgcggagtt cgtatgtgta ttggccgtcg ggaagccgct cgcctttaac
      661 gtcaaggcga aattccgggg acgttccggc tgcgaactct ttactgaaaa cctgtccgtc
      721 gggggcggca acagtcaacg tgaccgccgc gtgtggacca gcgacttccc acctgacgct
      781 ggatccgagt cccgtcatag aggcaaattg attctcggta gattgggcta aagcagtggt
      841 gcaaaaagcg gttagggcta acaagcagag tacggagggt aggtgttttc gattcttcat
      901 tagaagcctt ccttgagtcg gcgcagggcc gaagtgtcat agtgggtaag gatctccctg
      961 aatttcttcg gggacagaga gtagccttaa gtaagcgagg ttaactaagt acaatcccct
     1021 ataaacaacc agccgcccgc gtgtcaagat attctttcga aaaggttgaa tcgggaaggt
     1081 aagtagcgca tactcagggg caaattttat tctggttagc ggaggcgggc catgaagctg
     1141 atcttcgttt tgccgatcct tttgagtctc cttattcctt accaactccc cagttcgaat
     1201 ggagattcac cattggtagt gtccaacttc aagtggacga aggcgcgccg cgcagttgag
     1261 acaccgccgg tggaaggcaa cacaccggcg cgagcgatga tcccgcaaaa cagaaacttt
     1321 gcccgcaatg cacgcatcaa cgatccggcc ggcgtgagag atccaaatgc cgacacgctc
     1381 gacggacgca gcgcggcaat ggaaaaaagc gtggcggaat cgcgcaccgc aaaaccgaaa
     1441 gcaacagacg gcttcgctta caagatcaaa gtacagaacc ccggcacaaa agcagtagaa
     1501 atagtttttt gggaatatca gtttcacgat ccggcggatc cttcgctggt cgcacggcgg
     1561 cagttcttgt gcggcgtgaa tatcggcgcc gacaagagca aggaactcga aggtttcagt
     1621 ttgtctggtc ccggcgtggt caacgtcaac acgctcgcgg acaagtcaga gaatccgttc
     1681 aaggagcagg tcctgatcaa tcgggtggag tatgccgacg gatcgatctg gcagagaaaa
     1741 ggctggagcc tgaacgaagt caaggcgagt tacgagcgtg tgttacgtga acaatgggtg
     1801 cccggcatgt gcaagggtct gtaatgaatt aaatggaatc tctggaagtc gtcaaaccaa
     1861 aactcctcat catcgacgat gaagagcaga tcaggcattt acttatggat ctgctcggca
     1921 gtctttacga ctgttgcacg gcgagctcgg ctgaagaagc gctcgcagcg ttgtcggaac
     1981 aaaccttcga cctcgttatc agcgacatcg acatgggccg cattagcggt ctcgagttgg
     2041 tgccgcgtgt ccattcactc tcgcccgaca ccgtcgtcgt gatgatcagc ggcaaccagg
     2101 acatcgagtt tgcgatccag gcgttgcgtg tgggcgcgtt tgactacatc acgaagccca
     2161 tcgatctgcg gcacgtcgag gcgtctgtcg aacgcgcgtt gaagcacagc gagctgttga
     2221 aagagaagcg ccgttacaag gaacagctcg aagagttgct gcaaaagcgc acggcgcagg
     2281 tcgactggct cgcttactac gacacggtca cgcaactccc gaatcgcgcg ctcttcgaag
     2341 accggctcac gcaggcgtgt tccatcgcca aatccaacgg ccagtcgttg ggcgtgctgt
     2401 ttatctcact ggaccagttc aagaaggtaa acgattcgct cggacatgga ccgggcgacg
     2461 gtttgctgcg tgaatttgcg gaacgtttga agagctgcat cagcaagtct gacacggttg
     2521 cgcgcttcgg taacgacgag tttgcgttgc tcaagacgcg gatcgacgac accaacgacg
     2581 tgatcgaaac gatcggttcg ctgtcgcagg tgttgaggtt ctcgtttgac ctgccgggcc
//
LOCUS       DASWTX010000152         2608 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_327430, whole genome shotgun sequence.
ACCESSION   DASWTX010000152 DASWTX010000000
VERSION     DASWTX010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2608
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_327430"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..241
                     /locus_tag="VGD38_02370"
     CDS             <1..241
                     /locus_tag="VGD38_02370"
                     /inference="COORDINATES: protein motif:HMM:NF013079.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726884.1"
                     /translation="EYSKQIKSDIADIKNVGGRKAGTITAAAFIKEFTDGLAWAHLDI
                     AGTAWGDEAKPYRSKGPTGIAVRTLLRIVDRASAK"
     gene            775..1611
                     /locus_tag="VGD38_02375"
     CDS             775..1611
                     /locus_tag="VGD38_02375"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HEY0726885.1"
                     /translation="MIDYYKVLGVKTNASQAEIKSAYRKLARKSHPDLNPNSEAGRQF
                     ALLSKAYHALIDPQERAYYDEKLREQKNRSYSILDSNNPHAKRARNLAVQAKWDRLVD
                     EVLERDRLENSKRQRAVFTTVSLFLSTFFLAMMRPQLWQLFSIWGKVIVLTLFVMGVW
                     HLANRLREYLAHYTYRPDVIQGSIMRVPSLPEQPFTRFSAYTFLLVGYGLSVGIGLYI
                     GWHTQDFFNDIALLFRDADVVQSSVLAYAWAAILIPDLVIYPPIAVLIVDTVHGITSR
                     ID"
     gene            1718..1996
                     /locus_tag="VGD38_02380"
     CDS             1718..1996
                     /locus_tag="VGD38_02380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726886.1"
                     /translation="MGRTVSQRQFLAQKLETLNEAEVCEVLDYISAMESQHETRQRSR
                     TVSSVWEDEVLSVLAEARENRRARQTFEWEAVRRKAEKRAAARVGAHL"
     gene            1997..>2608
                     /locus_tag="VGD38_02385"
     CDS             1997..>2608
                     /locus_tag="VGD38_02385"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HEY0726887.1"
                     /translation="MGERQKIGFNFVPAIMLAAGAILFLFSSLAYAQSSRNLTPLQAE
                     IERQQQRLSSGDEEERRDALMRLGALRRAEASRVALPALSDPSPIIRVTAAKAILSLD
                     PAQSAAALLPLLNDKDEFVRREIAYSLGMTRSRTATAALSERLLNDKEAGVRGAAAVA
                     LGRIADEAGVVALSSTLVPELSAPTKGKRKREENEFVLRAAAEA"
BASE COUNT          548 a          717 c          757 g          586 t
ORIGIN      
        1 agagtactcg aaacagatca agtcggacat tgccgacatc aagaacgtcg gtgggcgcaa
       61 ggccggcacg attacggcgg cggcgtttat taaagagttc acagatggcc tggcgtgggc
      121 gcacctcgac atcgccggaa cggcctgggg cgacgaggcc aagccgtacc ggtcgaaggg
      181 cccgacgggc atcgccgtcc ggacgctgtt gcgaattgtg gacagggcga gcgcgaagta
      241 gggaagttta gggttcgcgt tctgagttca cgttttgagt tcagccttta ggctgtccgt
      301 cgagccacaa gctaaagctt gaactcagaa cgcgaactca aactcggacg aatccggggt
      361 gagctggaag gtaaagtgtc attagtcgta gacacttggt gtttccgcta gttgacactt
      421 gtgcggtgcc gtacagacct tttcttcgct ttttgggggt tttttgaaga attgagcggt
      481 ggcatggcgg ttgtaatgtc ggatagcaat cgccaaaggg tgcgagtcgc cttaatcgta
      541 acgtcctcgc cccctcgaat gccgctcgag gttattatcc cggctcccct ttggcacccc
      601 ccttccaaac cgaactctcc cgacaacttc gaaacttttt tcagcctccg gcatctgagt
      661 actgtaacga tcggttaggc cttgcgcagg gtggtataat tttcgcgccg agcgctttct
      721 cctcaggcag ccttggcaat catcgctggc tttaaggagt ccaacagaag cacagtgatc
      781 gactactaca aagttctggg tgttaagacc aatgcttccc aagccgagat caaatcggct
      841 taccggaaac tcgcgcgcaa aagtcatccc gacctgaatc caaactccga agctggacgc
      901 cagtttgccc tgttgtcgaa ggcgtatcac gcgctaatcg atccgcagga acgcgcctac
      961 tacgacgaaa aacttcgcga gcagaagaac cgcagttatt cgattctcga ttccaataat
     1021 ccgcacgcga agcgcgcccg taatcttgcg gtgcaggcaa agtgggatcg tctggtagac
     1081 gaagtgctgg aacgtgaccg gttggaaaac agcaaacgcc agcgtgcagt cttcacgacg
     1141 gtttcactgt ttctgtcgac gtttttcctg gcgatgatgc ggccgcaact ctggcagttg
     1201 ttctcgatct ggggcaaggt catcgtgctg actttgtttg tgatgggcgt gtggcatctc
     1261 gcaaaccgcc tgcgcgaata cctggctcat tacacttacc ggcccgacgt gattcagggc
     1321 tcgatcatgc gcgttccgag cttgccggag cagccgttta cacggttctc ggcgtacacg
     1381 tttttgctcg tcggctacgg gctcagcgtt ggtattggac tctacatcgg ctggcacacg
     1441 caggactttt tcaacgacat cgccctgctg tttcgcgacg ccgatgtcgt gcagtcgagt
     1501 gttctggcct acgcgtgggc ggcgattctg attcctgacc tggttattta tcctccgatc
     1561 gcggtgctca tcgtcgatac cgtgcacggc attacctcgc ggatcgacta gtccgccctg
     1621 ttttcgattg gccgaaattc ttgcctcccc gctttttggt cgtgtatatt gctgccccgt
     1681 cgcaaaaaca tctcgtcgcc ccgaaaggag cacggaaatg ggcaggacag taagtcagcg
     1741 gcagtttctc gcccagaaac tcgagacgct taatgaagct gaagtgtgcg aggttttaga
     1801 ctacatttcg gcaatggaat cccagcacga aacaaggcag cgttcgcgaa ccgtttcatc
     1861 cgtctgggaa gatgaggtgt tgtcggtttt ggcagaggct cgcgagaacc ggcgtgcgcg
     1921 ccagacgttt gagtgggaag cagtgcgccg gaaagcggaa aagcgagcgg cagcgcgagt
     1981 tggcgctcac ctctgaatgg gcgaacggca aaaaatcgga ttcaactttg tgccggcgat
     2041 aatgcttgcc gccggcgcaa ttcttttcct cttttcgtct ctcgcttacg cgcagtcaag
     2101 tagaaatctc accccgcttc aagctgagat cgagagacag caacaacggc tcagttccgg
     2161 agatgaagaa gaacgccgcg acgcgttgat gcggctcggc gcgctgcgtc gcgcggaagc
     2221 gtcgcgcgtg gctttgcctg cgctttcaga tccgtcaccc atcattcgcg tgacggcggc
     2281 gaaagcaatc ctttcactcg acccggccca aagtgccgcc gcgttgctgc cgctgctcaa
     2341 cgataaagac gagtttgtcc gccgcgaaat agcttactcg cttggcatga cgcgtagccg
     2401 aaccgcgacc gccgcgctca gcgaacgatt gttgaatgac aaggaagcgg gtgttcgagg
     2461 cgctgcggct gtcgcgcttg gaaggatcgc tgatgaagcg ggcgttgttg ctttgtcgag
     2521 cacactcgtg ccggagttat ccgcacccac gaagggcaaa cgcaaacggg aagagaacga
     2581 atttgtcttg cgcgctgccg cagaagct
//
LOCUS       DASWTX010000153         2518 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_67348, whole genome shotgun sequence.
ACCESSION   DASWTX010000153 DASWTX010000000
VERSION     DASWTX010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2518
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67348"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..775)
                     /locus_tag="VGD38_02390"
     CDS             complement(<1..775)
                     /locus_tag="VGD38_02390"
                     /inference="COORDINATES: protein motif:HMM:TIGR00259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BtpA/SgcQ family protein"
                     /protein_id="HEY0726888.1"
                     /translation="MASLFSRPKPVIGVIHVGALPGTPRSSQSVSELISLARDEAKLY
                     RESGVDGVIVENMHDVPYLRGEVGPEIVAAMTAIAAEVKRECGLPVGVQLLAGANIEA
                     MAVAHAADLDFIRAEGYAYAHVADEGLIQASAAKLLRYRRMIGATRVQVWTDVKKKHA
                     AHAITADVSLGETAETVEFMGADCVIVTGSATGKPPNVADVREAKSHCHLPVFLGSGI
                     TQNNVSEFYNHADGFIIGSAFKLDGLWSNTVDPARVATFL"
     gene            complement(792..>2518)
                     /locus_tag="VGD38_02395"
     CDS             complement(792..>2518)
                     /locus_tag="VGD38_02395"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEY0726889.1"
                     /translation="HESALAAVGRLQQIEHEMHELEHRMAEAGDDLEKVLERYSDLQH
                     EFELEGGFEYAARAEAILQGLGFEREMWSLETEKLSGGQQNRLGLACLLLAAPDVLLL
                     DEPTNHLDVNAVEWLEEFLQEYESAYVIISHDRYFLDRCCRRIIELENGRAASYTGNY
                     SDYLVEREERREAQQRAYDNQQQLIAKTEEFIRHNIAGQKTKQAKSRRKMLEKLERLD
                     AVRPDQSSGDFRLQAIERTGNHVLTVTDLTIGYPDKMLATGIGFILRRGECLGIIGPN
                     GSGKTTFLKTILNKLAPLAGEVRWGTKVQIGYYAQQLDDLDERNEIIMELRRVAPASA
                     TAGELRSFLAKFLFTGDDVYKHVRDLSGGEKGRLALAKLIYSRVNVLVLDEPTNHLDI
                     PSREALEEALDAYEGTIITISHDRYFLDRVATQILALDGLGGAEHYDGDYTEYHDWKL
                     GIGPSSLPAKTEQENLVSVVSVPAPPAVDESQPVKAKPAAPKKPGVKLVKKKKDARTP
                     ELVENEIAQAESRLNEISEQMGTPEVARDADRLIALNDEYQQTEALLKNLYEEWERIT
                     QEPAPASK"
BASE COUNT          473 a          731 c          739 g          575 t
ORIGIN      
        1 ggaggaaggt tgctacgcgc gccggatcga ctgtgtttga ccaaagtccg tcaagcttga
       61 acgctgaacc aatgataaat ccgtcggcgt ggttgtaaaa ctcggaaacg ttgttctgtg
      121 ttattcccga accgagaaac accggcagat ggcaatgact cttagcctcc cgcacgtcgg
      181 cgacgttcgg tggtttgccg gtcgcgctgc cggtcacaat cacgcaatca gcgcccatga
      241 actcgactgt ctcggcggtc tcgccaagac tgacgtcggc cgtgatcgcg tgcgccgcgt
      301 gtttcttctt cacgtcggtc cagacctgca cgcgcgtcgc tccgatcatt cgacggtatc
      361 ggagtagctt tgcagctgat gcctggatca gaccttcgtc cgcaacgtgc gcgtatgcgt
      421 aaccttcagc gcgaatgaaa tcaagatcgg cggcatgggc caccgccatc gcttcgatgt
      481 ttgcgccggc gagtaattga acgcctacgg gcagaccaca ctcgcgtttc acttccgcgg
      541 caatcgccgt catcgccgcg acaatttctg gtccaacctc accgcgcagg taaggcacgt
      601 cgtgcatgtt ctcgacgatc acgccatcca cgccggattc gcgatacagc ttcgcctcgt
      661 cacgtgcgag ggagatcaac tcggagacac tctgcgagct gcgtggtgtt ccgggcagcg
      721 cgccaacgtg aatcacgccg atgacgggtt tggggcggga gaaaagtgaa gccataaact
      781 tctctgcgcg atcacttcga agcgggggcg ggttcctgcg tgatgcgctc ccattcttcg
      841 taaaggttct tgagcagcgc ttccgtttgt tggtactcgt cgttcaaggc aatcagacga
      901 tcagcgtcgc gcgccacttc gggcgtgccc atctgttcgg agatctcgtt gaggcgcgac
      961 tcggcttgcg cgatttcgtt ctcgaccagc tcgggtgttc tcgcgtcttt ctttttctta
     1021 accagcttta cgccgggttt cttcggcgcc gctggtttgg ctttcaccgg ctgagattcg
     1081 tcgacagcag gaggggcggg aacagacaca acactgacga ggttctcctg ttcggtcttt
     1141 gcgggcaggg atgaaggacc gatgccaagt ttccaatcgt gatactcggt gtaatcgccg
     1201 tcgtaatgtt cggcgccgcc gagaccgtcg agggccagaa tctgcgttgc gacgcgatcg
     1261 agaaaataac ggtcgtgact gatcgtgatg atcgtgcctt cgtaagcgtc gagtgcttct
     1321 tccagcgctt cgcgcgatgg gatgtcgaga tggtttgtcg gctcgtcgag cacgagcacg
     1381 ttcacgcgcg agtagatcaa cttcgcgagc gccagtcttc ccttttctcc accggaaaga
     1441 tcccgcacgt gcttgtagac gtcgtcgccc gtaaacagaa acttcgcgag aaatgaccgc
     1501 aactcgccgg cagtcgcact cgccggcgca acgcggcgca actccatgat gatctcgtta
     1561 cgctcgtcga gatcgtcgag ctgctgcgcg tagtaaccaa tctgaacttt cgtgccccag
     1621 cgcacttcac cggcaagcgg cgcgagcttg ttcaggatcg ttttaagaaa cgtcgtcttg
     1681 cccgagccgt ttggaccaat gatgccgaga cactcgccac gccgcaaaat gaacccgatg
     1741 ccggtcgcca gcatcttgtc cggataaccg atcgtcagat cggtaaccgt caacacgtga
     1801 ttgccggtgc gttcgattgc ctgaagacga aagtcgcctg acgattgatc ggggcgcacc
     1861 gcgtcgagac gctcgagctt ctccagcatc ttgcggcgcg actttgcctg ctttgtcttc
     1921 tgcccggcga tgttgtggcg tatgaactct tccgtcttcg caatcaactg ctgctgattg
     1981 tcgtaagcgc gctgttgtgc ttcgcgacgt tcttcgcgtt cgacgagata gtcggaatag
     2041 ttgccggtgt agctcgcggc gcggccgttt tcgagctcga tgatgcggcg gcaacagcga
     2101 tcgagaaaat agcgatcgtg actgatgatg acgtaagcag attcgtactc ctgcagaaac
     2161 tcttccagcc actcaactgc gtttacgtcg aggtgattgg tgggctcgtc gagcagcagg
     2221 acgtcgggtg cggctaacag cagacaggcg aggccgaggc ggttctgttg tccaccggaa
     2281 agcttctcgg tttcgagtga ccacatctcg cgctcgaagc cgagaccttg gaggattgct
     2341 tccgcgcggg ccgcgtattc gaaaccgcct tcgagctcaa actcgtgctg tagatcgctg
     2401 taacgttcga ggaccttttc gaggtcatcg cccgcttccg ccatgcgatg ctcgagctcg
     2461 tgcatctcat gttcgatctg ttgcagacgg ccgacagcgg cgagggctga ttcgtgga
//
LOCUS       DASWTX010000154         3354 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_110720, whole genome shotgun sequence.
ACCESSION   DASWTX010000154 DASWTX010000000
VERSION     DASWTX010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3354
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110720"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1330
                     /locus_tag="VGD38_02400"
     CDS             <1..1330
                     /locus_tag="VGD38_02400"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY0726890.1"
                     /translation="DYRVFGFALLLSVLTGVLFGTVPAWFASRTDLNLALRENSRGST
                     AGRSQHRLRHTLIIGEVAFAMVLLAAAGLFLRGLYRFINADPGWRVDGLVTAQLTLRG
                     EKYADQRQRVAFLTALENRLRTLPGVENAAIGSSQPAYRFNRSNSFLVEGRPEPPPDK
                     LLEIFVEPVSKDYFATLGVHLLQGRTFNEHDVADRPNVAIINETTARTFWPNESPIGK
                     RVSNAGRQRAYAEIVGVVNDLAFPGDLEEPPTRFQAFVPAAQAAPSDLTLFLRTSTSA
                     DALGNTLRNAVGELDSGLPVYRIRSVELAVDQGLGRVSLLGRALGAFALVGLLLAAIG
                     IYGVISYTVVQRTGELGIRMALGAQTRDVLWLVLGKGAVLVLIGAVLGGASAYGVSRL
                     LLSLIPSLPTWDPLVLVLTGLALVVVAMASCFIPARRATRVDPLVALRSE"
     gene            1350..1805
                     /locus_tag="VGD38_02405"
     CDS             1350..1805
                     /locus_tag="VGD38_02405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726891.1"
                     /translation="MNKLLLNVTGIILFTFVSLPAVYSQTVSTPRNGSLVEEFSFVLK
                     DLKIDHQGENNVLNISISFRYKPNITKAEYPDFRWLAKDVETLLSNYPNEDDYWEIVN
                     KQVTALLLKKYPALASVTCELKVDPSRNVPYSRASRVTRERSSIKSSAR"
     gene            complement(1786..>3354)
                     /locus_tag="VGD38_02410"
     CDS             complement(1786..>3354)
                     /locus_tag="VGD38_02410"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0726892.1"
                     /translation="EISFFELIRSGSFTTNREEVKTDQPNTTSEPKSVEPPKTDAQRR
                     AVIFFVDDLHLAPARLARPRPALLDFIARGIGDGDLVAITSPSGQIGFLQQFTADREA
                     LRSAVARLNYRTNTKTDMQHPPMSEYIAQKIREGDEHAMTYYIQEIQKQACFRAGGQT
                     ICTISPQAAKQQVRMRAQQMVVESAPATDDTLRLLEGLMRTAAQIPGRKLVFVISDGF
                     YLNDVKTGAIDRIKRVTDAAGRAGVVIYTLDARGIVGDSIDVTNQKPISPDGKLSGAT
                     IGEIAASQDGLNALAKDTGGQAFRNTNAPMHEWVEKVMDETSNFYLLAWKPDNEEQKR
                     GKFKQIEISIVDRPDLKVRVRSGYFKSAALPLLNTRKKSSKDPSKARDDDMRLVIDAP
                     VSQREIPMEVDLRFVQMPGVGTRVVATISIDESALTFDVIDGKLAADVDIGGICYDDK
                     GKPIDSIVGRLRILPRSSNASLAPGSTNKQKRLIYRFSTMVPGGLYQVRVGIRDLKSS
                     RIGSAMDWITVPKI"
BASE COUNT          629 a          926 c          995 g          804 t
ORIGIN      
        1 cgattacagg gtgttcggct tcgcgttgtt gctttcagta ttgactggcg tgctgtttgg
       61 gacggtgcct gcgtggtttg catcgcgcac ggatctgaat ctcgcgttgc gcgagaactc
      121 gcgcggatct accgcgggcc gatcgcaaca ccggttgcga cacacgctca tcatcggcga
      181 agtcgcgttt gcgatggtgt tgctcgcggc ggcgggattg tttctgcgtg gcttgtatcg
      241 cttcatcaat gccgatcccg gctggcgtgt cgatggattg gtgacggcgc agctgactct
      301 tcgcggagag aaatacgccg atcaacgaca gcgcgttgct ttcctgaccg cgctggaaaa
      361 ccgtctccgc acgttgcccg gtgttgagaa cgccgcaatc ggcagttcgc aaccggccta
      421 tcgcttcaac cgcagtaatt cgtttttggt tgagggaaga ccggaacccc cgccggataa
      481 gctgctggaa atatttgtcg aaccggtaag caaggactat ttcgcgacgc tcggtgttca
      541 tttgctacag ggccgcactt tcaacgaaca cgatgtagcc gatcgcccga acgttgcgat
      601 catcaacgaa accaccgcgc gcactttctg gcccaacgag agtccgatcg gaaaacgcgt
      661 cagcaatgct ggtcgacagc gggcgtatgc tgaaatcgtc ggcgttgtta acgacctcgc
      721 gtttccgggt gatctcgaag agccgcccac acgctttcaa gcgtttgttc cggcggccca
      781 ggcggcgccg agtgatctca cgttgttcct tcgcacctct acgagcgcgg atgcgcttgg
      841 caacacttta cgcaacgcgg ttggcgaact ggattcgggc ttgccggttt accgcattcg
      901 cagcgtagag ttggccgtcg atcagggcct gggaagagtc tcgctgttgg gaagagcgct
      961 cggcgcgttt gctctggtcg gtttgctgct cgcagcgatt gggatttacg gtgtgatctc
     1021 gtacacagtg gtccaacgta ccggcgagct cggaatccgc atggcgctcg gagcgcagac
     1081 tcgcgacgtt ctctggctgg tgttgggcaa aggcgcagtg ctggtcctga tcggcgcggt
     1141 gttaggcggc gcgagcgcgt acggcgtttc gcgactgttg ttatcactca ttccttcatt
     1201 acccacatgg gatccgctgg ttcttgtgtt aactgggctt gcgctcgttg tagtcgccat
     1261 ggcgtcctgt ttcatcccgg cgcggcgcgc aacgagagtc gatccgctgg tagcactaag
     1321 gtccgagtaa gccagaggaa aaattgctta tgaacaaact actgctgaac gtgacaggga
     1381 ttattctgtt tactttcgtg agcctgcctg cggtttattc acagactgta tcgacaccgc
     1441 gaaatggctc gctcgtcgaa gagttttcgt ttgtgctcaa agacttgaag atcgatcacc
     1501 agggtgagaa caacgtcctc aacatttcaa tctcgtttcg ttataaaccg aacatcacga
     1561 aggctgagta tcccgacttt cgctggctgg ctaaagacgt cgagacgctg ttgagcaatt
     1621 atccgaacga ggacgactac tgggagatcg tgaacaagca agtcaccgcg ctcttgttga
     1681 agaagtatcc cgcgctggcg agtgtgacgt gtgagttgaa agtcgatccg tcgcgcaacg
     1741 ttccttattc ccgcgcgagc cgcgtcacgc gcgagcgttc gtccattaaa tcttcggcac
     1801 ggtgatccaa tccatggcgc tgccgatgcg gctgctcttc aggtcgcgaa tgccgactcg
     1861 gacctgatac agaccacccg gaaccatcgt gctgaacctg tagatcaatc gcttttgttt
     1921 atttgtagag ccgggagcaa gtgaagcgtt tgagcttcgc gggagaattc gcaaacgtcc
     1981 gacaatgctg tcgatcggtt tgcctttgtc gtcgtagcag ataccgccga tatccacgtc
     2041 ggccgcaagt tttccatcga taacgtcaaa cgtcagcgcc gattcgtcga tcgagatcgt
     2101 cgcgacgacg cgcgtgccga cacccggcat ctgcacgaac cgcagatcta cttccatcgg
     2161 tatctcacgt tgcgaaacag gcgcatcgat caccagccgc atatcgtcgt cgcgtgcttt
     2221 cgacggatct ttgctcgact tcttcctggt gttcagcaat ggcaaagcgg ctgatttgaa
     2281 gtagccgctg cgaacgcgaa ccttgagatc gggacggtcc acgatgctga tctcgatctg
     2341 tttgaacttg cctcgctttt gttcttcgtt gtctggtttc cacgccagca ggtagaagtt
     2401 ggacgtttcg tccatcacct tttcgaccca ctcgtgcatc ggcgcatttg tatttcggaa
     2461 tgcctggccg ccggtgtcct tggcgagcgc attgaggccg tcctgcgacg cggcgatctc
     2521 gccgatcgta gcgccgctca gcttaccgtc cggagatata ggcttctgat tcgtgacgtc
     2581 gattgagtcg ccgacgatgc cgcgcgcatc gagcgtgtag atcacgacgc cggcgcgtcc
     2641 ggctgcgtcg gttactctct tgatgcgatc gatcgcgccg gtcttaacgt cgttgagata
     2701 aaaaccgtcg gagattacaa acacgagttt gcgtccgggg atctgagccg ctgtgcgcat
     2761 cagtccttcg agcagacgca gcgtgtcatc tgttgccggc gccgactcga cgaccatctg
     2821 ctgcgcgcgc atcctgactt gttgttttgc agcttgagga gaaatcgtgc agatcgtttg
     2881 gccgccggct cgaaaacagg cctgcttttg aatctcctgg atgtagtaag tcatcgcgtg
     2941 ttcgtcgcct tcgcggatct tctgcgcgat gtactcagac atcggcggat gctgcatgtc
     3001 cgttttcgtg ttggtgcggt agttcaaacg cgcgacggct gaacgcaacg cttctcgatc
     3061 agcagtgaac tgttgcagga acccgatctg tccgctgggc gaagtgatgg cgacaagatc
     3121 accgtcgccg atgccgcgag cgatgaagtc gagcagcgcg gggcgtggtc gggccaagcg
     3181 cgcgggcgcg agatgcagat cgtcgacgaa gaaaatgacg gctcggcgct gtgcgtcagt
     3241 tttaggtggc tcgactgact tgggctcgct ggtcgtgttt ggctggtcgg tcttcacctc
     3301 ctcgcgattg gtggtgaaac tgcccgacct gattaattcg aagaacgaga tctc
//
LOCUS       DASWTX010000155         1910 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_327465, whole genome shotgun sequence.
ACCESSION   DASWTX010000155 DASWTX010000000
VERSION     DASWTX010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1910
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_327465"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1468)
                     /locus_tag="VGD38_02415"
     CDS             complement(<1..1468)
                     /locus_tag="VGD38_02415"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY0726893.1"
                     /translation="MPERQTLLSYLDDYERRGDETVFVHHRGLRTVRWSYKRLVQEAH
                     AFARELKSRGIDRGDRVLLTGENSPEWAAAFWGCCLLGAVVVPLDKGSTPDFIHSVTE
                     QTLAKVVITDLNVHETSHVRDISFPHGVTQDGLVEVIYTSGTTSEPKGVVLTHQNLLA
                     NLRPLEREIGKYLKHEKFFHPIRFLNLVPLSHVFGQFMGLFVPQLLGGEVHFTETLNP
                     SEIVRTTRKNRISVIVLVPRVLDALREWVERDYTSRGCELSERLAKMEQHGFLHRWWT
                     FRKLHRQFGFKFWAFVSGGATLSERTEDFWQRLGFAVLQGYGMTETAALISVNHPFKR
                     SRGSIGRLMPGYEVKLDESGEIMVRGASVSPGYWTTSGNVNGREGEWLRTGDVGQLDA
                     SGNLFFKGRQKDVIVNAAGLNIYPEDLEAALDRQPEIRASCVVAVEGARGSEPFAAII
                     PHDSHATIPAAIKRANEQLAEYQHVRQWSTWPEHDFPRT"
     gene            1587..>1910
                     /locus_tag="VGD38_02420"
     CDS             1587..>1910
                     /locus_tag="VGD38_02420"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY0726894.1"
                     /translation="MPDQKPFAGKAAIVTGGTRGIGRAIAIELAQRGADVAFNYAQSV
                     ESAETLKSELEALGVRALAFQCNVGNTEAAAEMVKQVKDAFGRIDFLVHNAGITRDNL
                     ILRMKE"
BASE COUNT          395 a          555 c          575 g          385 t
ORIGIN      
        1 cggtgcgcgg gaagtcgtgt tcgggccagg tggaccactg gcgtacgtgt tgatactccg
       61 cgagttgttc gttggcgcgt ttgatcgccg ctggaatggt agcgtgagag tcgtgaggga
      121 ttatcgccgc gaatggttcg ctgccgcgcg cgccttcaac cgcgacgacg caactcgcgc
      181 ggatttccgg ttggcgatcg agtgcggctt cgagatcctc gggatagatg ttcaatccgg
      241 ccgcgttgac gatcacgtct ttctgccggc ctttgaagaa gagatttccg ctcgcgtcga
      301 gctggccgac gtcgcccgtg cgcagccact cgccttcgcg cccgttcacg tttccgctgg
      361 tggtccaata acccggcgag acgctcgcgc cgcgcaccat gatctcgccg gattcgtcga
      421 gcttcacttc gtaacccggc atcaggcgtc caatcgagcc tcggctgcgt ttgaacggat
      481 gattcactga gatgagcgcc gcggtttcgg tcatgccgta gccttgcaac accgcgaagc
      541 cgagccgttg ccaaaagtct tcggtgcgct cgctgagcgt tgcgccgccg gaaacaaacg
      601 cccagaactt gaaaccaaac tgccggtgaa gtttgcgaaa ggtccaccag cggtgcagga
      661 acccgtgctg ttccatcttt gcgagacgtt cgcttaattc gcagccgcgc gatgtgtaat
      721 cgcgttcgac ccattcacgc aacgcgtcga gcacgcgcgg tacgagcacg atcactgaga
      781 tgcggttctt gcgcgtggtg cgaacgatct ccgacgggtt caacgtttcg gtgaagtgga
      841 cttcgccgcc caacaattgc ggaacaaaga gtcccatgaa ctgaccgaag acgtggctca
      901 acggcacgag gttgagaaag cgaatcggat gaaagaattt ttcatgcttc aggtacttgc
      961 cgatctcgcg ctcgagggga cgcagattgg ctaagagatt ttggtgtgtg agtacgacgc
     1021 ccttgggttc ggatgtggtg ccggaggtgt agatgacttc gacgagcccg tcttgcgtaa
     1081 cgccgtgggg gaaggagatg tcccgcacgt gggaggtttc atgaacgtta agatcggtga
     1141 tgactacttt tgcgagggtt tgttcggtga ccgagtgaat aaagtcgggt gtgctgcctt
     1201 tgtcgagcgg gacgactacc gcaccgagca agcaacaacc ccaaaacgcc gccgcccact
     1261 cgggactgtt ctcgcccgtc aagagcacgc ggtcgccgcg atcgatgccg cgggatttca
     1321 attcacgtgc gaaggcgtgt gcttcctgca cgaggcgttt gtacgaccag cgcaccgtgc
     1381 gcaggccgcg atgatgcacg aagacggttt cgtcgccgcg ccgttcgtaa tcgtcgagat
     1441 agcttagaag agtctgtcgc tccggcattc cacgtttggt ctcgctcgtt aacctatgtt
     1501 attagagacc gccctgagcg aagaaacaag cagccatgtg acacgagaac gagtgtcaaa
     1561 ataagtcagc agaaaggtca ataattttgc ccgatcagaa accattcgcc ggtaaggccg
     1621 cgatcgtcac cggcggcacg cgcggcatcg gacgcgccat cgccatcgag ctcgcccaac
     1681 gcggcgccga cgtcgccttc aactacgcgc aaagcgtcga atcagcggaa actctcaaat
     1741 cagagctcga agccctgggc gtacgcgcac tcgcgtttca atgcaacgtc ggcaacaccg
     1801 aagccgccgc cgagatggtc aaacaggtca aggacgcctt cggccgcatc gacttcctcg
     1861 tccacaacgc cggcatcaca cgcgacaacc tgatcctgcg tatgaaagaa
//
LOCUS       DASWTX010000156         2983 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_88330, whole genome shotgun sequence.
ACCESSION   DASWTX010000156 DASWTX010000000
VERSION     DASWTX010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2983)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2983)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2983
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88330"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..373
                     /locus_tag="VGD38_02425"
     CDS             <1..373
                     /locus_tag="VGD38_02425"
                     /inference="COORDINATES: protein motif:HMM:NF013962.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HEY0726895.1"
                     /translation="VAPAIRTEITTEQSTRSLAGTLFGYGEQRREGRITEIDGFYLEA
                     TPKGHMLVMRNNDVPGVIGQVGTILGERGVNISRFHLGRRERGGEAMALIEIDAPATK
                     ETLQALRNLEQVISAQPIELS"
     gene            393..2267
                     /locus_tag="VGD38_02430"
     CDS             393..2267
                     /locus_tag="VGD38_02430"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family peptidase"
                     /protein_id="HEY0726896.1"
                     /translation="MPVSSRALVELVLLGPTNDRRQLQDSPVLGDVWIAYAMKPADSH
                     DLLITPHKEHGAGRVALRIAKRLKNLRVRKEGAQNSEIAYLQGLVAARLYFEELLRVL
                     VPMTQWWTDRKVEDTLQSYTDGKRLKVLIATLIKWAKAKNEDAQTEAAKGFAEFVGLD
                     RFASLAAVILWAAAKNKNRRTLLGAGDALATSKGPNEIVELFLKTLNTIGSDSEANKT
                     EVPSQIWQVSLNRRAMPAIVRSVPAVKGDAARTLFRVKCDNIRWAVLDSGIDGSHPAF
                     KVKNPDGTETSRVVKAFDFRNIRKILTAIEMKPQAFKELLDEFGADEGKKVSLKEATR
                     IQKALVEDAEADRPIHWELLEDYISVDPKTTKPESDHGTHVAGIIGAEAKEGSRFADG
                     MCPDIKLYDVRVLGKTMPDTEFAIIAALQFLRYLNERHTYMTIHGANLSLSIPHDVRN
                     FACGRTPICNESERLVESGVVVVAAAGNLGYQRFETKDGSYEGYTAFSITDPGNADGV
                     ITVGATHRYRPHTYGVSFFSSRGPTGDGRLKPDLVAPGERIESCLREHSWGELDGTSM
                     AAPHVSGAAAMLMARYDELIGEPQRIKRILCESATDLGRERSFQGHGMLDVLRAFQSI
                     "
     gene            2279..>2983
                     /locus_tag="VGD38_02435"
     CDS             2279..>2983
                     /locus_tag="VGD38_02435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726897.1"
                     /translation="MIFSLDVRRARKGDCLILHYGSKKAPGLGLIDGGPSQVYGPHLK
                     PRLEQIRTSRELGPDEPLPVDFLMVSHVDDDHIKGVLELTKELLEAKAAKRPLPVKIK
                     GVWHNTFDDIIGNSPKELTAAVTAQFGAASLNGEADVEGLDPDVAKVLASVGQGFRLR
                     DDIRGLKLRINPDFAGGLVIAKKKAKAIDMGKGLKFTVVGPLHAEVVALQKDHDKFLK
                     KKEKGTASLLAAFTDSS"
BASE COUNT          681 a          789 c          921 g          592 t
ORIGIN      
        1 tgtggcgcct gcgatccgca ccgagatcac gaccgaacaa tcaactcgca gtctcgccgg
       61 aactcttttc ggttacggcg aacagcggcg tgaaggccgc atcaccgaga tcgacggctt
      121 ctatctcgaa gccacgccaa agggccacat gctcgtgatg cgcaataacg acgtgcccgg
      181 cgtgatcggg caagtcggca cgatcctcgg cgaacgcggc gtgaacatca gccgctttca
      241 tctcgggcgt cgcgaacgcg gcggtgaagc gatggcgctg atagaaatcg acgcgcccgc
      301 gactaaagag acgttgcaag cgttgcgcaa tctggagcaa gtgatctcgg ctcaaccaat
      361 cgaactatct taactacaca agaggagcga ccatgccagt ttcttcacgc gcgctcgtcg
      421 aactggttct actcggtccg acgaacgatc gtcgtcaact gcaagactca ccagtgctcg
      481 gagacgtgtg gatcgcttac gcgatgaagc ccgcggattc gcacgacctg ctgatcacgc
      541 cgcacaaaga gcatggcgcg ggacgcgtgg ccctgcgcat cgcgaaacgt ctcaagaatc
      601 tgcgcgttcg gaaggagggt gcgcagaact ccgagatcgc ctatttgcag ggactcgttg
      661 cggcaagact ttattttgag gaactgctgc gggtgcttgt gccgatgacg cagtggtgga
      721 ccgatcgaaa ggttgaggac acacttcagt cgtacactga cggtaaacgc ctcaaggtat
      781 tgattgccac actcatcaaa tgggccaagg caaagaacga agacgcacag accgaggcag
      841 cgaaaggctt tgctgagttt gttggtctcg atcgttttgc gagtctcgcg gctgtcatcc
      901 tttgggctgc ggccaaaaac aagaatcgac gaacgttgct cggcgccggc gacgcactcg
      961 ccacgagcaa aggtcctaac gagatcgtcg agttgtttct caaaactctc aatacgatcg
     1021 ggagcgatag cgaagcgaac aagaccgagg ttccgtcgca aatctggcag gtttcgctta
     1081 atcgccgcgc gatgcccgcg atcgtcagat cggtgccggc ggtcaagggc gacgcggcgc
     1141 gcacgttgtt tagggtcaag tgcgacaaca tccgctgggc cgtgttggac tcaggcattg
     1201 acggctcgca ccctgcattc aaggttaaaa acccggatgg tacagagaca agccgcgtcg
     1261 tcaaagcctt cgacttccga aacattcgta agatcctcac ggcgatcgag atgaagccgc
     1321 aggcgtttaa ggagctgttg gacgagtttg gcgcggacga aggtaaaaaa gtaagtctga
     1381 aggaggcgac gcgaattcag aaagccctgg ttgaagacgc cgaggccgat cgcccgattc
     1441 actgggagct gctcgaggac tacatctccg tcgatccgaa gacgacgaaa cctgaaagtg
     1501 accacggcac acacgtcgca ggaatcatcg gcgcggaagc taaagagggt tcgcggtttg
     1561 ccgacggcat gtgtcccgac atcaagctct atgatgttcg tgtgcttggc aagacaatgc
     1621 ccgacactga atttgccatc attgccgcgc ttcagtttct gcgctatctc aacgaacgtc
     1681 acacgtacat gacgatccat ggcgcgaacc tcagcttgtc gatcccgcac gacgtgcgca
     1741 acttcgcgtg tggccgcacg ccgatctgta atgaatctga gcggctggtg gagagtggcg
     1801 ttgtggttgt tgccgcagcg ggtaatctcg gttatcagcg ttttgaaaca aaagacggtt
     1861 cttatgaagg ttatacggcc ttcagtatta ccgatcccgg caacgccgac ggcgtgatca
     1921 ccgttggcgc aacgcatcgc taccggccgc acacgtatgg cgtgagtttc ttttcgagcc
     1981 gtggtccaac cggcgacggc cgtttgaaac cggatctcgt tgcgccgggt gaacgtatcg
     2041 aatcgtgttt gcgagagcac tcgtggggtg agctcgacgg cacgagcatg gcggcgccgc
     2101 acgtcagcgg cgcggccgcg atgttgatgg cgcgttatga cgaactgatt ggcgagccgc
     2161 agcgaatcaa acgcattctg tgcgagagcg cgacggatct tggccgtgaa cgcagtttcc
     2221 aggggcacgg aatgctcgat gttttgcgag cgtttcagag tatctaggag gagaactcgt
     2281 gatcttcagt ctcgacgttc ggcgggcgcg caagggcgac tgcctcattc ttcactacgg
     2341 atcgaaaaaa gctccgggtc tggggttgat tgatggtgga ccatcgcagg tgtatggacc
     2401 acacctcaag ccgcgtctcg aacagatcag aacgtcgcgt gagcttggtc cggacgaacc
     2461 gctgccggtt gattttttaa tggtcagtca cgtcgacgac gaccacatca aaggcgtgct
     2521 cgaactgacg aaagagttgc tggaggcgaa agccgcgaag cgcccgttgc cggtcaagat
     2581 caaaggcgtg tggcacaaca cgttcgacga catcatcggg aacagtccga aggagttgac
     2641 tgcggcagtg acggcgcagt ttggcgccgc gtcgctcaac ggtgaagcgg atgttgaagg
     2701 actcgatcct gacgtcgcga aagtgctggc gagtgtcggg cagggctttc ggttaaggga
     2761 tgatattcgc gggctgaagt tgcggatcaa tccggatttt gcaggcgggc tcgtgatcgc
     2821 gaagaagaag gctaaagcga tcgacatggg caaaggattg aagttcaccg tggttggacc
     2881 actgcacgct gaagtcgtcg ccttgcagaa ggaccacgat aagtttttga agaagaagga
     2941 gaagggaacg gcgagtctgt tagcggcatt cactgatagc tcg
//
LOCUS       DASWTX010000157         2557 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_283962, whole genome shotgun sequence.
ACCESSION   DASWTX010000157 DASWTX010000000
VERSION     DASWTX010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2557
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283962"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1071)
                     /locus_tag="VGD38_02440"
     CDS             complement(<1..1071)
                     /locus_tag="VGD38_02440"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoamide acetyltransferase family
                     protein"
                     /protein_id="HEY0726898.1"
                     /translation="MSTEVVMPQMGESIAEGTITKWLKKVGERVERDEPLFEISTDKV
                     DAEIPSPAAGTLTEIRFKEGDTVEVNTVVAVLDGDGAGPSQKSPSPQPAAAEPPPPPV
                     ETKPEPPPPPAPAPAPAPPPPPATPAAKSAEPTVEELRRTKSSPLVRKIAQEHNVDIS
                     KLEGTGLSGRVTKNDILSYIESGSPATAPAAPPPAAPQRATAPAAAPSAPAPSMPAEL
                     PAPPPPRPQMGDRVEPMSVMRKKIAEHMVLSRRTSAHVTTVYEIDMTRIAKLREQHRD
                     SFYERTGTKLTFMPFIFEAVIKGLRKFPIFNAQVSGEQLIYKQDINLGMAVALDWGLI
                     VPVIKRADDLSISGLARAANDLA"
     gene            complement(1093..2121)
                     /locus_tag="VGD38_02445"
     CDS             complement(1093..2121)
                     /locus_tag="VGD38_02445"
                     /EC_number="1.2.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF006667.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HEY0726899.1"
                     /translation="MSTTVKKEHKSARPERGGQATMVEAIRQGIWEEMERDPSVFVIG
                     EDVGAYGGAFKVTDGLIDQFGKERVIDTPISEGAIVGAACGAALMGMRPVAEFQFIDF
                     ISAGFDLLTNYAAKCRYRWGAGLPTVFRGPCGSGVRSGPFHSLNAEAFFLNTAGLKIV
                     EPSTAYDAKGLIKAAIRDPDPVLYFEHKKLYRLPRLREELPADDYIVEIGKARVARSG
                     RDLSIITFGAMVLTALDAAEELEREGLDVEVVDLRTLAPLDKEAIRASVKKTKRAIVL
                     HEASRTGGIGGEIAATLAEEAFEWLDAPVIRVASLDTPVPYSPPLEDYYLPQTKDVVD
                     AARKLAAY"
     gene            complement(2124..>2557)
                     /locus_tag="VGD38_02450"
     CDS             complement(2124..>2557)
                     /locus_tag="VGD38_02450"
                     /inference="COORDINATES: protein motif:HMM:NF012880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEY0726900.1"
                     /translation="AEKAVGYGIPAHIVDGNDVIACYEVTKQAADYARGGGGAVLIEA
                     KTYRRKGHAEHDDQRYVAAGEVEWWEKNNDPVDRFEKYLLANNFTQQQLDEITADVVR
                     EIDEDCAWAESSPMPEPEQAAYNVFDNSVVPPAFRPKVLES"
BASE COUNT          449 a          785 c          770 g          553 t
ORIGIN      
        1 ggcgagatcg ttcgcggccc gcgccaaacc cgaaatgctc aaatcgtcgg cgcgtttgat
       61 gacgggaacg atcaggcccc agtcgagggc cacggccatg ccgagattga tgtcctgctt
      121 gtaaatgagt tgttcgccac tcacctgcgc gttgaagatc gggaacttgc gcagcccttt
      181 gataacggct tcgaagatga acggcatgaa cgtgagcttg gtccctgtac gttcgtagaa
      241 actgtcgcga tgttgttcgc gaagttttgc gatacgggtc atgtcgattt cgtagacagt
      301 ggtgacgtgt gcggaggtgc gtcgagacag gaccatgtgc tcggcgatct tcttgcgcat
      361 gacgctcatc ggttcgacgc gatcgcccat ttgtggacgt ggcggcggag gcgccggaag
      421 ttcggccggc atcgatggcg cgggtgcaga cggtgctgca gcgggcgctg ttgcgcgttg
      481 cggcgcggct ggcggcggcg ctgcgggtgc agttgccggg ctgcctgatt cgatgtagct
      541 caggatgtcg ttcttggtga cacggccgct caggccggtg ccctcgagct tggaaatgtc
      601 gacgttgtgt tcctgcgcga tcttacggac cagcgggctc gattttgtgc ggcgcagttc
      661 ttcaactgtc ggctccgcgg atttagccgc cggtgttgct ggcggcggag gcggagctgg
      721 cgccggtgcc ggagctggtg gcggtggcgg ctcgggtttg gtttcgactg gtggcggagg
      781 tggttcagcc gcagcgggct gcggggacgg ggatttttgg gatggtccag caccatcgcc
      841 gtccaacaca gcgaccaccg tgttgacctc gaccgtgtcg ccctccttga atcggatctc
      901 cgtcaacgtt cccgcggcgg gtgatggtat ctccgcgtcg accttgtccg tcgagatctc
      961 gaacaacggc tcgtcgcgtt cgacacgttc gccgaccttt ttcaaccact tcgtaatcgt
     1021 tccctccgcg atggattcgc ccatctgcgg catgaccact tcagtactca tctcgtctcc
     1081 gtcttatcca gatcagtaag cagcaagctt gcgcgccgca tcgacaacgt ctttcgtttg
     1141 cggcagatag tagtcttcaa gcggcggtga ataaggcacc ggcgtgtcga gcgacgcgac
     1201 gcgaatcacc ggcgcgtcca gccactcaaa cgcctcttcc gcgagcgtcg ccgcaatctc
     1261 gccgccaatg ccgcccgtgc gcgacgcctc gtgcaacacg atcgccctct tcgtcttctt
     1321 cacgctcgcg cgaatcgcct ccttgtcgag cggagctaac gttcttaaat cgacgacctc
     1381 gacgtcgagg ccttcacgct cgagctcttc agccgcatcg agcgccgtca ggaccatcgc
     1441 gccgaaagtg atgatcgaca ggtcgcgtcc gctgcgcgcc acgcgcgctt tgccgatctc
     1501 gacgatgtaa tcgtcagccg gcaactcttc acgcaaacgc ggcaagcgat agagcttttt
     1561 gtgctcgaaa tacagcaccg gatcgggatc gcgaatggcg gctttgatca ggcccttcgc
     1621 gtcgtacgcg gtcgaaggct cgacgatctt cagtcccgcg gtgttcagga aaaacgcttc
     1681 cgcgttgagc gagtgaaacg gtccggagcg cacgcccgaa ccgcatggac cacgaaacac
     1741 ggtcggcagt ccagcgcccc agcgataacg gcacttcgcg gcgtagttcg tcagcaggtc
     1801 aaacccggcg gagatgaaat cgataaactg aaactccgcg accggacgca tgcccatcaa
     1861 cgccgcgccg catgccgcgc cgacgatcgc gccttcggag atcggcgtgt cgatcacgcg
     1921 ctctttgcca aactgatcga tcaaaccgtc cgtgaccttg aaagcgccgc cgtatgcgcc
     1981 gacgtcttcg ccgatgacga aaacagacgg gtcgcgttcc atctcttccc agattccctg
     2041 gcgaatggct tcgaccatcg tggcctgacc gccgcgttcg ggccgagcag acttgtgttc
     2101 ctttttaact gtggttgaca tttttacgac tctaaaactt tcggccggaa agctggcggt
     2161 acgacgctgt tgtcgaaaac gttgtacgcg gcctgttcgg gttcgggcat cggcgacgac
     2221 tcggcccacg cgcagtcttc gtcgatctcg cgcacgacat ccgcagtgat ctcgtcgagc
     2281 tgttgttggg taaagttatt agcaaggaga tatttttcaa accgatccac gggatcgttg
     2341 ttcttttccc accactcgac ttcgcccgcc gcaacgtaac gctgatcgtc gtgttcggcg
     2401 tggcctttgc ggcgataggt cttcgcttca atcaacaccg cgccgccacc gccacgcgca
     2461 taatcagccg cctgcttcgt cacttcataa caagcaatga cgtcgttgcc gtccacgatg
     2521 tgcgccggta tgccgtagcc tacggccttc tccgcga
//
LOCUS       DASWTX010000158         2421 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_370686, whole genome shotgun sequence.
ACCESSION   DASWTX010000158 DASWTX010000000
VERSION     DASWTX010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2421)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2421)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2421
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370686"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1253)
                     /locus_tag="VGD38_02455"
     CDS             complement(<1..1253)
                     /locus_tag="VGD38_02455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726901.1"
                     /translation="MDLGILNTVIAMVIVLLVLSLLVQSVQMLLKKILKLKSKQIEDS
                     LKDLFDQAIAEATPPRQQAADGNNPAAGPASGAEVVTAICNRARVAVVGRTDVASAGA
                     ENFTRKVLDEFKKIGRVTKYGTPVLESLSKEDLFKVMAKFESEEFFPDYAERFKEVCK
                     QIIALRTAVETISGNEALRGSASAKLAQIRAVMAPIFNNVEAILDGEQVRPKVLFADL
                     LRLRQLDINGVLNLLDEAQKAITEERNVAAKAGQDLAPLDAISKALAEIAELIGELSK
                     KFDEAVSPLRRKLEQVEVWFDTVTQSFDERYARHMRTVSLYISIVIVVLLNANFFQIY
                     RTLSSNEVQRNLVTEAGAAIVDRAKQAQATATPAATPDATASPTPDRKEQIEESRQAI
                     QSLVETYEGFGFSPLTGQQFNAFLW"
     gene            1476..>2421
                     /locus_tag="VGD38_02460"
     CDS             1476..>2421
                     /locus_tag="VGD38_02460"
                     /inference="COORDINATES: protein motif:HMM:TIGR03607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like protein"
                     /protein_id="HEY0726902.1"
                     /translation="MTATPSQPAYSQEVRFAVVMYGGVSLAIYINGIAQELLRLVRST
                     AREQKPAFNGTERVYRKVSYLLADETLSMDDLDRLANQGSLPPTRFLVDILSGTSAGG
                     INGIFLAKALANGQDMEQLKDLWITEGDIETLINDQRSVEKPLSLQEPPTSLLNSERM
                     YFKLLDAFDGMDKLTNSQKETDTSPFVDELDLFVTSTDLQGVVLPIRLSDDLVYERRH
                     RNVMHFVYSERSVSGEDTRNDFFTSYNPFLAFAARCTSSFPFAFEPMCLTDIDSILKK
                     KDPYKKTDCLADSKLWQRFYRDYLDPRGVSTVPFPKRAF"
BASE COUNT          507 a          738 c          617 g          559 t
ORIGIN      
        1 ctccagagaa acgcgttgaa ctgttggccc gtgagcggcg agaagccgaa gccttcgtac
       61 gtctcgacca gcgactgtat cgcctgccgg ctttcctcga tctgctcctt cctgtccggc
      121 gtgggactcg cggttgcatc gggcgttgca gccggtgtcg ccgttgcctg cgcttgtttg
      181 gccctgtcaa caatcgctgc accagcctcg gtaaccagat ttcgttgcac ctcgtttgac
      241 gacagcgtcc ggtaaatttg aaagaagttc gcgttgagca ggaccacgat gacgatgctg
      301 atgtagagcg aaacggttcg catgtggcgc gcatagcgct cgtcaaaact ctgcgtcact
      361 gtgtcgaacc agacttcaac ctgttccagc ttgcggcgca gtggcgaaac cgcttcgtca
      421 aacttcttac tcaactcgcc gatcagctcg gcaatctcgg ccaacgcttt cgaaatcgcg
      481 tcgagcggcg cgaggtcctg cccagccttc gccgcaacat ttctctcctc agtaattgcc
      541 ttttgcgctt cgtcgagcag gtttagcacg ccgttgatgt cgagctgtct aagccgcagc
      601 aggtcggcaa acaagacttt cggtctgacc tgttctccat cgagaatcgc ttcgacgttg
      661 ttgaagatcg gcgccatcac ggcgcgaatc tgcgccagct tcgcgctcgc cgaaccccgc
      721 aacgcttcgt taccgctgat cgtttcaaca gcggttcgca gtgcgatgat ctgtttgcag
      781 acttccttga acctttccgc gtaatcggga aagaactctt ccgactcaaa cttcgccatc
      841 accttgaaca ggtcttcttt cgaaagcgac tcgagcaccg gggtgccgta cttcgtcacg
      901 cggccgatct tcttaaactc gtccaaaact ttcctggtga aattttcagc gcccgccgac
      961 gcgacgtcgg tcctaccgac tacggcgacc ctggcccggt tgcaaatggc tgtaacgact
     1021 tccgcgccgg aagcgggacc ggccgccgga ttgtttccgt ctgcagcttg ttgacgcggc
     1081 ggtgtggcct cagcgatcgc ctggtcgaaa aggtctttca gtgagtcttc aatctgtttc
     1141 gatttaagct tgagtatctt cttgaggagc atctgcaccg attgcacgag caggctcaac
     1201 accagaagca caatcaccat cgcgatgacg gtattcaaga ttccgagatc catgagggac
     1261 tcctttacgc attgcggccg agtgacaatt gcgagccact attcgtttca agaaagatgc
     1321 tgctactagc gagggcttac tgcggatact gaaggctcag tttgaataag cgacgagctt
     1381 cgggctgaca ataatttatt tatcttcttt gttcaatggg aatgatcaat tatctttcgc
     1441 aagttcttta gcccaacttc cgtgacggag gttccatgac tgccaccccc tctcagcccg
     1501 catattctca ggaagttcgt ttcgccgtcg tcatgtacgg cggagtctcg ctcgccatct
     1561 acatcaacgg catcgcgcag gagctgttgc ggctcgtgcg gtccacggcc cgcgagcaaa
     1621 agcccgcttt caacggcacc gaacgagtct atcgaaaagt cagttacctg ctcgcggatg
     1681 aaacgctcag catggacgac ctcgatcgac tcgcgaatca gggaagtctc ccgccgacgc
     1741 gctttctcgt agacattctt tccggcactt cagcaggcgg catcaacggc atcttcctcg
     1801 ccaaggcact cgccaacggc caggacatgg aacaactcaa ggacctctgg atcaccgaag
     1861 gcgacatcga aacgctcatc aacgaccagc gctccgtcga gaaaccactc tcgctgcaag
     1921 agccgccgac ttcgttgctc aacagcgaac gcatgtactt caaattgctc gacgcgttcg
     1981 acggcatgga caaactcacc aactcgcaaa aagagacgga cacgtcgccg ttcgtcgacg
     2041 agctcgatct gtttgtgacg tcaaccgatc ttcagggcgt cgtgctgccg atccggcttt
     2101 ccgacgatct ggtttacgaa cgccgccacc gcaacgtgat gcacttcgtc tactctgaac
     2161 gcagcgtcag cggcgaagac acacgcaacg atttcttcac gtcgtacaat ccgtttcttg
     2221 cgttcgcagc gcgctgcacg tcgtcgtttc cgtttgcgtt cgaaccgatg tgtctcaccg
     2281 acatcgactc gattctcaaa aagaaagacc cgtacaagaa gactgattgc ctcgcggaca
     2341 gcaaactttg gcaacggttc tatcgcgact atctcgatcc gcgcggcgtc tcgacagttc
     2401 cgtttcccaa acgcgcgttc g
//
LOCUS       DASWTX010000159         2519 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_175081, whole genome shotgun sequence.
ACCESSION   DASWTX010000159 DASWTX010000000
VERSION     DASWTX010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2519
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175081"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1245)
                     /locus_tag="VGD38_02465"
     CDS             complement(<1..1245)
                     /locus_tag="VGD38_02465"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY0726903.1"
                     /translation="MEALLTADAGNENFLTSPALEFAAGMLSDEAAEFAAGERVGRYE
                     ILCSLGAGGMGQIYLARDAQLGRNIALKLISQEFATDPRRVLRFEQEARAASALNHPN
                     VCVIHEIGITDRGRHFIAMEYIQGATLRDHLANGPLKPLEALQITVQVGTALASAHAV
                     GIVHRDIKPENIMLRPDGYVKVVDFGLAKLTEGMQEQRSPGEAQTIVRTEPRTLMGTV
                     KYMSPEQLREETVDERTDVLSLGVVLYEMLTGSTPFEARSRNDSVASILKAEPVQLTF
                     PEDIPNGYREIVEKALEKDCDERYQTTSKLIADLSSLKREIERNGENSSATVGPLKSS
                     PLEFTPLVGKQHGRSDSTIFARLKSQAILTADSLFGEIRTHKRLALFAGISSVVFLLF
                     LIPNRSTPALTIRRLTDAGTSVS"
     gene            complement(1437..2018)
                     /locus_tag="VGD38_02470"
     CDS             complement(1437..2018)
                     /locus_tag="VGD38_02470"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0726904.1"
                     /translation="MANRSSDGITQLLERWNNGEEQARDELMSLVYDELHRLAVTYLR
                     RERREHTLQPTALVNEVFLKLSEQHSMSWQNRAQFFGVAARFMRRILVDYARAHYASK
                     RGGDRFCVSLRNVAAFGAQPDADLLALHDVLNGLEQIDPDQAQLVELRFFAGLTIKET
                     AEVMGTSHATVEREWKIAKAYLKKELTKTAGPS"
BASE COUNT          541 a          655 c          696 g          627 t
ORIGIN      
        1 ggaaacagag gttccggcat ctgtcagtcg cctgattgtt agcgctggag tcgaccggtt
       61 gggaatgagg aaaagtaaaa agactacgct gctgatgccg gcgaaaagcg ccagccgctt
      121 gtgagttctt atctcaccga agagcgaatc agcagttaag attgcttgcg acttgagcct
      181 cgcaaatata gttgaatcgg agcggccgtg ttgtttgcca acaagcggtg tgaactcgag
      241 cggcgacgac ttcagcgggc caactgtcgc tgaactattt tcaccgttgc gctcgatctc
      301 acgtttaaga ctgctcaaat cagcgatgag cttcgacgtc gtttgatacc tttcgtcgca
      361 atctttctcc agcgcctttt caacaatctc gcgatatccg ttcggtatgt cttcaggaaa
      421 tgtgagttgg accggctctg ctttgagaat cgaagcgact gaatcattgc gcgatcgggc
      481 ttcgaaaggc gtggagccgg tgagcatctc gtaaagcacg acgccaagac tcaagacgtc
      541 cgttcgctcg tctaccgtct cttcgcgcag ttgttcgggc gacatgtact tcaccgtacc
      601 catcagcgta cggggttcgg ttcgcacgat ggtttgtgct tcgccaggcg aacgttgttc
      661 ctgcatgccc tcggtgagtt tcgcgagacc gaagtcgacg accttcacgt agccgtcggg
      721 gcgcaacatg atgttttcgg gtttgatgtc gcgatgaact atgccgacag cgtgtgcgct
      781 ggcgagtgcg gtgccgactt gaactgtgat ttgtaacgct tcaagaggtt taagtggacc
      841 attagcaagg tgatcgcgaa gtgtcgcacc ctgaatgtac tccatcgcga tgaagtgccg
      901 gccccggtcc gtaattccga tttcatggat aacgcatacg ttcgggtggt taagagccga
      961 cgcggcgcgt gcttcctgtt cgaaacgaag gacgcgtcga ggatcggtcg cgaattcctg
     1021 cgagatcagt ttgagcgcga tattgcggcc caactgtgcg tcgcgcgcca gatagatctg
     1081 gcccattcca ccggcgccca gcgagcaaag tatttcgtaa cgcccaactc tttcaccggc
     1141 ggcaaattcc gctgcctcat ctgagagcat gccggcagca aattccaatg ccggagaagt
     1201 tagaaagttt tcgttcccgg cgtcagcggt aagcagtgct tccacttctt cccggatcag
     1261 caaatcgtcg ccgcaaactt cattgagaaa atctgggcgc tctgcaggag ggcgttcctg
     1321 agcggagtga aatatttctt ttattcgttg ccatctttca tgggtgatca tgtcgattct
     1381 tgaggttgta gttgcatggt cgatgactat aacgcgagat ctgtcgctca agtccctcaa
     1441 gaaggacccg ccgtttttgt tagctctttt ttcaggtacg ctttggcgat tttccactcg
     1501 cgctcgacgg tcgcgtgtga ggtgcccatt acttccgcag tttctttaat tgtcaggccg
     1561 gcaaaaaaac gcaactccac aagttgtgct tgatccggat cgatctgttc gagaccgttc
     1621 aaaacatcgt gtaaggccag cagatcggcg tcaggctgcg cgccaaaagc agcgacgttt
     1681 ctgagtgaca cgcagaaacg atcgccgccg cgcttggagg cgtaatgggc gcgcgcgtag
     1741 tcgacgagaa tgcgacgcat gaaccgtgcg gcgacgccga aaaactgcgc cctgttttgc
     1801 cagctcatgc tgtgctgctc ggaaagtttt agaaaaacct catttaccag tgcggtcggt
     1861 tgtagggtgt gttccctgcg ttcgcggcga agatacgtaa cggccagccg gtgaagttcg
     1921 tcataaacaa gcgacattag ctcgtcgcgg gcttgttcct caccattgtt ccatctctca
     1981 aggagttgtg tgatgccgtc ggacgaacgg ttcgccattc ctttttctct tttctgtctg
     2041 ggcgaaatcg tctcgagagt gcgtgagcgg gcgaattgca aggtgcccgg ttggccgcga
     2101 ttctaccatg aaaataattg aggcaatctt tccggcaaat acgcgttatg tgaaaacaaa
     2161 gcgaaacatg cttcttctcg gaagcgagcg actttctttg taaacatacc tcaccccccg
     2221 ccccctttga aacgaagcgg caacctcgca cggttataag taagccgctt cgttctcttt
     2281 ggggtattgg ggcatcgcac ttggagcccg cggatttggt tattggctgc cagcaacact
     2341 gcattgttcg gcgcttcgct aaccgcggtc cacgcaacat tgcagcactc catgttggca
     2401 gttcgtttgt cacaaacaag gagatcaata atgtctaagc agctatgcca acccgcgggt
     2461 ttacagagtc aagtttgtgg tccacaacag cgggaccgct gagactgttg gaatgttga
//
LOCUS       DASWTX010000160         2620 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_88350, whole genome shotgun sequence.
ACCESSION   DASWTX010000160 DASWTX010000000
VERSION     DASWTX010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88350"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..782
                     /locus_tag="VGD38_02475"
     CDS             <1..782
                     /locus_tag="VGD38_02475"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY0726905.1"
                     /translation="CLHVSFWTGKTVMITGASSGIGKGLALQIAARGGRLGLLARRED
                     LLNEIVDEIKAQGGTAMAVSADVRDAQAVRAAADRIRAELGPIDVMIANAGIGTSIHA
                     SQLNPEQVAEVININVLGAVNSVAAVTPEMVERKSGQLVAISSLAGYRGLPKSAAYCA
                     SKAALSSFFESLRIDLRNTGVTVSVIHPGFIKTPLTAGRGAKMPYLMELDDGVTKIRN
                     AIEKGKKSYAFPWQLATIVRSALVMPAGMYDWIAGRNSFRE"
     gene            779..1663
                     /gene="uppP"
                     /locus_tag="VGD38_02480"
     CDS             779..1663
                     /gene="uppP"
                     /locus_tag="VGD38_02480"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: protein motif:HMM:NF014703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphatase UppP"
                     /protein_id="HEY0726906.1"
                     /translation="MTILQAIVLGIVQGLTEFIPVSSTAHLVFAARLVNLYGDVGDKT
                     LQAEQTTATIAVIQLGTLLAVLIYFASDIINILRAFVGDHLAWMRGRNVPGQPKLSKD
                     AWLGWLVIIGSIPVGIVGLLFKKQIEGPFTKNLWVIATMMIVVGLLLTLAEFVGKRDH
                     GMDQLTIKDALAVGWAQVLALIPGSSRSGSTIMGGLFAGQTRETAARFSFLLSIPAIA
                     ASGLLELKEAIEKLPGDTYGALVVATIVSGAVGYASIWFLLRFLRTHSTGVFIIYRVI
                     VGGLILGALSAGYISASI"
     gene            1673..1966
                     /locus_tag="VGD38_02485"
     CDS             1673..1966
                     /locus_tag="VGD38_02485"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HEY0726907.1"
                     /translation="MDQRPRSPRVPVEFPLAVEGTDQSGQTFQIKGTAVKISHGGATI
                     IVDVDIPVGSPVTLVQASGAKLAAEVNGSWIDDLDGKRRIGVRLLDANGWFSG"
     gene            1979..>2620
                     /locus_tag="VGD38_02490"
     CDS             1979..>2620
                     /locus_tag="VGD38_02490"
                     /inference="COORDINATES: protein motif:HMM:NF013528.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEY0726908.1"
                     /translation="MKAKRWNVRRQDAEAAASLARVLGVSPILAALLISRGYAEERAA
                     RAFLSPSYDQLHEPYLMLGMREAVARLKQAIETNEPVLIYGDYDVDGTTGTAILLRAL
                     KLLGAKTGFHIPHRFTEGYGIQQPALERAFAEGYKLVVSVDCGIRAHEPLYWARDKGL
                     DVIITDHHLPDEDEGAPPAFAVLNPNQEGCTYPDKHLAGVGVAFKLVHALFREY"
BASE COUNT          519 a          725 c          823 g          553 t
ORIGIN      
        1 gttgtcttca cgtgagtttc tggaccggca aaacagtgat gattaccgga gcgtcctccg
       61 ggatcgggaa aggtctggcg ttgcagatcg cggcgcgcgg cggacggctc ggtctgctcg
      121 cgcggcgtga agacctgctg aacgagatcg tcgatgagat caaggcgcaa ggcgggacgg
      181 cgatggctgt tagtgctgac gtgcgtgatg cacaagcggt gcgcgcggcc gcggatcgca
      241 ttcgcgccga gcttggtcca atcgacgtga tgatcgcaaa cgccggcatc ggcacttcaa
      301 tccacgcttc acaactgaac cccgagcagg tcgcggaagt catcaacatc aacgtgctcg
      361 gcgcggtcaa cagcgtcgcc gcggtaacgc cggagatggt cgagcgcaag agcgggcagt
      421 tggtggcgat ctcgagtctc gcgggttatc gaggcttgcc gaagtcggcc gcgtactgcg
      481 ccagcaaggc cgcgctgtcg tcgttttttg agagtttgcg aatcgatctg cgcaacacag
      541 gcgtgacggt ttcggtgatc catcccggat tcatcaagac gccgttgact gccgggcgcg
      601 gtgcgaaaat gccgtatcta atggaactcg acgacggcgt cacaaaaatt cggaacgcaa
      661 tcgagaaagg aaagaagagt tacgccttcc cctggcaact cgcgaccatc gtgcgctcgg
      721 ccctcgttat gccggcggga atgtacgact ggatcgcagg cagaaactca tttcgcgaat
      781 gaccattctt caagctatcg ttctgggcat cgttcaaggc ctgaccgaat tcattcccgt
      841 tagttcaacc gcacatctcg tttttgccgc ccgcctcgtg aatctttacg gcgacgttgg
      901 ggataagacg ctgcaagccg aacagacgac cgcgacgatc gccgtgattc aactcggcac
      961 gttgctcgcg gtgctgatct atttcgcgtc tgacatcatt aacatcctgc gcgcgtttgt
     1021 tggcgatcat ctcgcgtgga tgcgtggccg caacgtgccg ggtcagccaa agctttcgaa
     1081 ggacgcgtgg cttggttggc tcgtgatcat cggatccata ccggtcggca tcgtggggtt
     1141 gttgttcaag aaacagattg aaggtccgtt tacgaaaaac ctgtgggtga tcgcgacgat
     1201 gatgatcgtt gtcggactgt tgttgacgct cgcggagttc gttggcaaac gcgaccacgg
     1261 gatggaccaa ttgacgatca aggatgcgct cgcggttggc tgggcgcagg tgctggcgtt
     1321 gattccggga tcgagccggt cgggttccac gatcatgggc gggttgtttg cgggccagac
     1381 gcgtgagacg gccgcgcggt tttcgtttct gttgtcgata ccggcgattg cggcgagcgg
     1441 gctgctggag ctgaaagagg cgatcgagaa gctgccgggc gatacttacg gcgcgctggt
     1501 tgtggcgacg atcgtttcgg gcgcggtggg ttatgcgtcg atctggttcc tgctgagatt
     1561 tttgcgcacg cactcgacgg gagtgtttat tatttaccgt gtgatcgtcg gcgggttgat
     1621 tttgggcgcc ctgtcggcgg gatatatctc agcgagtatt taaggacaca aaatggatca
     1681 gcgacctcga agcccgagag ttccggttga atttccgttg gcagttgaag gcacggacca
     1741 gtcgggccag acatttcaaa taaaaggtac ggcagtaaag atcagccacg gcggcgcgac
     1801 aatcatcgtc gacgtcgaca ttcccgtcgg gtcacccgtg acactggttc aggcctccgg
     1861 tgctaaactg gcggctgaag taaacggttc atggattgat gacttggacg ggaagcgccg
     1921 catcggcgtc aggcttctcg acgcgaacgg gtggtttagt ggttagctca agtaataaat
     1981 gaaagccaaa cggtggaacg tgcgacggca ggacgcggaa gccgccgcct cgctcgcacg
     2041 cgttttgggt gtctcaccga ttctggccgc gctcctcatc agtcgcggct acgccgagga
     2101 acgcgccgcg cgcgctttcc tttcgcccag ttacgatcaa ctgcacgagc cttatttaat
     2161 gctcggcatg cgcgaggccg tcgcacgtct gaaacaggcg atcgaaacga acgaacccgt
     2221 cctgatctac ggcgattacg acgtcgacgg cacgaccggc accgcgatcc tgctacgtgc
     2281 gctcaaactg ctcggcgcga agaccggatt tcacattcca catcgcttca ccgaaggcta
     2341 cggcattcaa caacccgcgc tcgaacgcgc ctttgccgaa ggttacaaac tcgtcgtcag
     2401 cgtcgactgc ggcatccgcg cgcacgagcc gctttactgg gcgcgcgaca agggcctcga
     2461 cgtaatcatc accgatcacc atttgcctga cgaagacgaa ggcgcgccgc ccgcgttcgc
     2521 cgtgctcaat ccgaaccagg aaggttgtac gtatcctgac aagcacctcg cgggtgtcgg
     2581 cgtcgcgttt aagctggtgc acgcgttgtt tcgcgagtac
//
LOCUS       DASWTX010000161         1880 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_24128, whole genome shotgun sequence.
ACCESSION   DASWTX010000161 DASWTX010000000
VERSION     DASWTX010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1880)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1880)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1880
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24128"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(118..630)
                     /locus_tag="VGD38_02495"
     CDS             complement(118..630)
                     /locus_tag="VGD38_02495"
                     /inference="COORDINATES: protein motif:HMM:NF018161.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726909.1"
                     /translation="MQKGFEYITSNRVMLTYELPLNEIVLDFYDRLKSVSRGYASLDY
                     NLAGYRESDLVKLDVLVAGEPVDALSLILHRATAQPKGRALAEKMKQLIPRQLFEVPI
                     QAAIGNKVIARETVKALGKNVIAKCYGGDITRKRKLLEKQKEGKKRMKKVGRVEIPQE
                     AFLAVLKVNE"
     gene            complement(640..>1880)
                     /gene="lepA"
                     /locus_tag="VGD38_02500"
     CDS             complement(640..>1880)
                     /gene="lepA"
                     /locus_tag="VGD38_02500"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HEY0726910.1"
                     /translation="HIDHGKSTLADRLLELTGALSEREMENQVLDNMDLERERGITIK
                     AHAVRLDYKAQDGQKYVLNLIDTPGHVDFSYEVSRSLSACEGALLIVDASQGVEAQTL
                     ANTYLAIENNLELIPVINKIDLPGAEPEKAIEQIEHFIGLETPNAILTSAKTGQGVAD
                     VLEAIVRETPPPKGDVNAPLKALIFDSWYDSYRGVIVLFRVIDGTIRPGMKIRFFNAN
                     RDYQVETLGVNRPVPTPIDQLSVGEVGFLTASIKTVADVQIGDTITEAARPTKEPFPG
                     FQEIKPMVFAGLYPVDTNQYEELRDALDKLRLNDASFFYEPDSSAALGFGFRCGFLGL
                     LHMEIVQERLEREFNLDLITTAPGVRYIVTTTDGQVTEIDSPAKMPDPGRIAKIEEPV
                     IRATILTPDEHLGGILPLLE"
BASE COUNT          376 a          580 c          493 g          431 t
ORIGIN      
        1 cgaggctgcg agcgcgcgga tttttgccgc cagctccggc gacgcttcag tgcgtgcaca
       61 acacagcagc aactcgttct cggctcgatc catttttatc tgtggaaatc tgtggcctca
      121 ctcgttaacc ttcaaaacag ccagaaacgc ttcctgcgga atctcgaccc gtccgacttt
      181 cttcatccgc ttcttgcctt ccttctgttt ctccagcaac ttccgtttgc gcgtgatgtc
      241 gccgccgtag cacttggcga tgacgttttt cccgagcgct ttaaccgttt cgcgcgcgat
      301 caccttgttt ccgatcgccg cctgaatcgg cacttcaaac agttgccgcg gaatcaactg
      361 cttcatcttt tccgccagcg cgcgtccttt cggttgcgcc gtggcgcggt gcaggatcaa
      421 cgacaacgca tccaccggtt cacccgccac tagcacatcc agtttcacca gatcgctttc
      481 ccgatacccg gcgaggttgt aatcgagcga ggcatatccg cgcgaaacgg atttcagccg
      541 atcgtaaaag tcgagcacaa tctcgttcag cggcagttca tacgtcagca tcacgcgatt
      601 ggacgtgatg tactcaaaac ctttctgaat tccgcgcttc tattcaagca acggcaggat
      661 gccgccgaga tgttcgtccg gcgtcaggat cgtcgcgcga atcaccggct cttcgatctt
      721 cgcaatccga cccggatcgg gcattttcgc gggcgagtcg atctcagtga cttgtccgtc
      781 cgtcgtcgtg acgatgtaac gcacacccgg cgcggtcgtg atcaggtcga gattgaattc
      841 acgctccaaa cgctcctgca cgatctccat gtgcagcaaa ccgagaaacc cgcaacgaaa
      901 accaaaaccc agcgccgccg acgagtccgg ctcgtaaaag aacgacgcat cattcaaccg
      961 cagcttgtcg agcgcgtcgc gcaactcttc gtactggttc gtgtccaccg gatacaaacc
     1021 ggcaaacacc atcggcttga tctcctggaa accgggaaac ggttccttcg tcggccgcgc
     1081 tgcttccgtg atcgtgtcgc caatctgcac gtcagccacg gtcttgatcg acgcagtcaa
     1141 aaatccgact tcgccgacgc tcaactgatc gatgggcgtt ggcaccgggc ggttcacgcc
     1201 aagcgtctca acctgataat cgcgattcgc gttgaagaaa cgaatcttca ttcccggccg
     1261 aatcgtgccg tcgatcacgc gaaacagaac gatcacgccg cgatacgagt cgtaccacga
     1321 gtcgaagatc agcgctttga gcggcgcgtt cacatcgcct ttcggcggcg gcgtctcgcg
     1381 cacgatcgct tcgagcacgt ccgcgacgcc ctggcctgtc ttggcgctgg tgagaatcgc
     1441 attgggagtt tcgagaccga tgaagtgttc gatctgttcg atcgcttttt ccggttcggc
     1501 gccgggcaag tcgatcttgt tgatgaccgg gatcagttcg agattgtttt cgatcgcgag
     1561 gtaagtgttc gcaagtgttt gcgcttcgac gccctgtgaa gcatcgacaa tcaacagcgc
     1621 gccttcacac gccgaaagcg atcgcgacac ttcgtaagaa aaatcgacgt gacccggcgt
     1681 gtcgatcagg ttcaaaacat acttctgacc gtcctgtgct ttgtaatcga gcctgaccgc
     1741 atgggccttg atcgtgatgc cgcgttcgcg ttcaaggtcc atgttgtcga gcacctggtt
     1801 ttccatctcg cgttctgaca acgcgcccgt gagctcgagc agacgatcgg caagtgtcga
     1861 cttgccgtgg tcgatgtgcg
//
LOCUS       DASWTX010000162         2109 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_110816, whole genome shotgun sequence.
ACCESSION   DASWTX010000162 DASWTX010000000
VERSION     DASWTX010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2109
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110816"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..450
                     /locus_tag="VGD38_02505"
     CDS             <1..450
                     /locus_tag="VGD38_02505"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEY0726911.1"
                     /translation="YTGDRETAVKLLNEALATEIVCVLRYKRHHYMASGIHAESVAAE
                     FLEHANEEQGHADSIAQRIVQLKGEPNFNPDGLLSRSHAEYVEGDTLTDMIKEDLVAE
                     RIAIDSYREMITYFGNDDPTSRRLMEEILAVEEEHADDLVNLLETMG"
     gene            506..1789
                     /locus_tag="VGD38_02510"
     CDS             506..1789
                     /locus_tag="VGD38_02510"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEY0726912.1"
                     /translation="MCRSCGAIVGASEPQCAVCGTPTGLSPEQLQNYRGADRETIRFA
                     RAVLSRPNIFTIVLLVANLFVFMLMWASSGTSSQVLWVAFPEPVLEAYGAKLNYLINA
                     PNYQWWRFITPMFVHINLPHLLVNMYSLWIVGPYVEKLYGSAKFVVFWVVTGIAGVVG
                     SYLTVRPDLATGALGRFLFKSADLPSAGASGALFGLVGVLFVFGIKFRRELPEGFKRA
                     FGTGMIPIIVINLVIGFLGRGLIDNAAHLGGLVAGAALATVVQYRRPGERRGMAAACR
                     ILQVLALLIVAIGFYKTARHFNRSMQVATQAVLSEQAALFVQYAAAMNQASATTKAVI
                     ETRDVSNVDQAVQRLDQAPVLDAQAAEFRNRLRSILVRAATAAAAATPPPGDGPRRLP
                     PLEDPKLTEEFAKWNGEYNEWIKQATQTYLSGQSR"
     gene            1806..>2109
                     /locus_tag="VGD38_02515"
     CDS             1806..>2109
                     /locus_tag="VGD38_02515"
                     /inference="COORDINATES: protein motif:HMM:NF014757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HEY0726913.1"
                     /translation="MEIRKVGVLGCGLMGAGIAQVAASAGYQTVVREVSEDLINKGFG
                     GIEKSLAKFAEKGTITAEQQTEIRGRLSGTTSFDALADCDIIIEAIIENLEEKRSTY"
BASE COUNT          451 a          525 c          669 g          464 t
ORIGIN      
        1 tataccggag atcgcgaaac cgcagtcaaa cttctaaacg aagcgctggc cacggagatc
       61 gtctgcgtcc tgagatataa acggcaccac tacatggctt ccggcattca tgccgaaagc
      121 gtagccgccg agtttctcga acacgcaaac gaggagcagg gacacgctga ttcgatcgcc
      181 caacgcatcg tccagcttaa aggcgaacca aacttcaacc ccgatggcct gctttcgcgc
      241 agtcacgccg aatacgtcga aggcgatacg ctgacggaca tgatcaaaga agacctcgtg
      301 gccgaacgta tcgcgatcga cagctatcgt gagatgatca cctacttcgg caatgacgat
      361 ccgacttcgc gccggttgat ggaagaaata ctcgccgtcg aagaagaaca cgcagacgat
      421 ctagtgaacc tgctcgaaac gatgggttaa cggcagcgca ttgtctgaaa gccagtcaaa
      481 ccaaactggc cccggccggc cgacaatgtg ccgcagttgt ggggcgatcg taggtgcttc
      541 ggagccgcaa tgcgccgtct gcggcacgcc caccggcctg tcaccagaac aactccaaaa
      601 ttaccgtgga gccgatcgcg aaacgatcag gtttgcacgc gccgttctta gccgtcctaa
      661 catcttcacc atcgttctgc tcgtcgcgaa cctgtttgtg tttatgttga tgtgggcgtc
      721 gagtgggacg tcgtcgcaag tgctctgggt cgcgtttccc gagccggtgc tcgaggcgta
      781 cggcgcgaag ctgaattacc tcatcaacgc tccgaactat cagtggtggc gcttcatcac
      841 gccgatgttt gtgcacatca acttgccgca cctgctggtc aacatgtaca gcctgtggat
      901 cgttggacca tacgtggaga agttgtatgg gtcggcgaag tttgttgtgt tttgggtggt
      961 gacggggatc gcgggtgttg tcgggagtta tttgacggtg cggccggatc tggcgacagg
     1021 cgcgttggga cggtttttgt tcaagagtgc tgacttgccg tcggcgggtg cttcgggagc
     1081 gttgtttgga cttgtcggcg tgctgtttgt ttttgggatc aagtttcgcc gcgaattgcc
     1141 ggagggtttc aagcgtgcgt tcggcacggg catgattccc atcatcgtga tcaatctggt
     1201 tatcggtttt cttggtcgcg ggttgattga taatgccgcg catcttggcg ggctggtggc
     1261 aggagcggca ctggcgaccg tcgtgcaata tcgccggccg ggcgagcggc gcggaatggc
     1321 ggccgcgtgc cgaattcttc aggtgctggc gcttttgatc gtcgcgattg ggttttacaa
     1381 aaccgcgcgg catttcaatc gctcgatgca ggttgcaact caggcggtac tcagcgaaca
     1441 ggcagcattg tttgtgcaat atgccgcggc gatgaatcag gccagcgcaa cgacaaaggc
     1501 ggtgattgag acccgcgacg tgagcaacgt ggatcaggca gttcaacggc tcgatcaggc
     1561 gcctgtgctc gatgcgcagg cggcggagtt tcgcaatcgg ctgcgttcaa ttctggtgcg
     1621 cgcggcgact gcggcggcag cggcgacgcc gccaccgggt gatggaccac gacggttgcc
     1681 gccgttggaa gatccgaagc tgactgaaga gtttgcaaag tggaacggcg agtataacga
     1741 gtggatcaaa caagcaacac aaacgtattt atcagggcaa tcaagataat ttttaggaga
     1801 tagagatgga aattaggaaa gtcggtgttt tgggctgtgg tttgatgggc gccgggatcg
     1861 cgcaggtggc ggccagtgcc ggatatcaaa cggttgtgcg ggaagtttcg gaggacttga
     1921 ttaataaagg gtttggcggg attgagaagt cgttggcgaa gttcgcggag aaagggacga
     1981 tcacggctga acagcagact gagattcgcg ggcgtttgtc gggcacgacc tcgttcgacg
     2041 cgcttgccga ttgcgacatc atcattgaag ccattattga gaatttggaa gagaagcgca
     2101 gcacttacc
//
LOCUS       DASWTX010000163         1512 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_153517, whole genome shotgun sequence.
ACCESSION   DASWTX010000163 DASWTX010000000
VERSION     DASWTX010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153517"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1218
                     /locus_tag="VGD38_02520"
     CDS             <1..1218
                     /locus_tag="VGD38_02520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726914.1"
                     /translation="RLQTTGVQPADELGFPPQSMVRGRGGADTTAPNNNPLSRLMNSR
                     SAELQKNFDGAELLAKETGGFVIRNKNDFGIDRVLEDQNGYYLIGYRPESETFKRQLH
                     KIQVRVKRGGFTVRTRAGFYGFTESAAAGPPSERDRMNMALISPFGAKDITLRLKALF
                     ADDPQRGPVLRTFVVVPLKDLTFYTERNGMPTTRYEVSYVLLGDNGAVVDLKNFTVTM
                     QLGDEAFQRAQGEGMIYSFDVPLKRAGAFQLRLAVRDEKTQRIGSASQFLRTPNLSDG
                     RLALSDILLYAEAPNLDPDDWNRALVLRRFQPGASLVFGYTIYNAALDKKTGRPNLLT
                     QTIIFRDSQKIYSSDRVAVADKDQADLKRITAGARLQLGTALTPGEYVFQIVVEDQVA
                     KRTTTQVTQFEVK"
     gene            complement(1211..>1512)
                     /locus_tag="VGD38_02525"
     CDS             complement(1211..>1512)
                     /locus_tag="VGD38_02525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726915.1"
                     /translation="SPLPLELGSSMEALVAFYRSAMAKAGVAPIFTATPHTPAVLVLP
                     SVFRDVVLYTFVSETNKDTTMQVTDLQTRARFSVTVPAGRTAMVMIDRRTGKRIT"
BASE COUNT          328 a          445 c          445 g          294 t
ORIGIN      
        1 cgactccaga cgactggagt gcaaccggca gacgaactcg gctttccacc gcagtccatg
       61 gtgcgcggcc gcggcggagc agacacgaca gcgccaaaca acaatcctct ttcgcgcttg
      121 atgaacagcc gttccgccga gctgcaaaag aacttcgacg gcgcggagtt gctcgcgaaa
      181 gagaccggcg gttttgtaat tcgcaacaag aacgacttcg gtatcgatcg cgtgctcgaa
      241 gatcagaacg gctactacct gatcggctat cggcccgaga gcgaaacgtt caaacggcag
      301 ctccacaaga ttcaggtgcg cgtcaaacgc ggcggtttca ccgtgcgaac gcgtgccggg
      361 ttctacggct tcacggaaag cgccgcggct ggtccaccat ccgagcgcga tcgcatgaac
      421 atggcgctca tctcgccgtt tggcgcgaag gacatcacgt tgcgcctcaa ggcgctcttc
      481 gcggacgatc cgcagcgtgg ccccgttttg cgcacgtttg tcgtggtccc gctgaaggac
      541 ctcacgtttt atacggaacg caacggaatg cccacgacgc gctacgaggt gagttatgtt
      601 ctgttgggcg ataacggcgc ggttgtcgac ctcaaaaatt tcacagtgac gatgcagctt
      661 ggcgacgagg cgttccaacg tgcgcaaggt gaaggcatga tctacagctt cgatgtgccg
      721 ttgaaacgcg cgggagcttt tcaattgcga ctcgccgtgc gtgatgagaa gacgcagcga
      781 atcggttcgg ccagtcagtt tctgcgcacg ccgaatctca gcgacggacg cctggcgttg
      841 tcggacattc tgctttacgc cgaggcgccc aatcttgacc cggacgattg gaaccgcgcg
      901 ttagtgttgc ggcggtttca gccgggcgcg tcgctggtct tcggctacac gatctacaac
      961 gccgcgcttg ataagaaaac aggccgtccg aatttgctga cgcagacgat aattttccgc
     1021 gactcgcaaa aaatctacag ttccgatcgc gtagctgtag cggacaagga tcaagcggac
     1081 ttgaagcgga taaccgccgg cgcgcgtctg caactcggaa cggcgctcac tcccggcgaa
     1141 tacgtttttc agattgtcgt ggaagatcag gttgcgaagc gcaccactac acaagtgacg
     1201 cagtttgaag ttaagtgatc cgcttgccgg tacgcctgtc gatcatcacc atcgcggttc
     1261 ggccggcggg aacagtgact gaaaagcgcg ccctggtttg caggtccgtc acctgcatcg
     1321 tcgtatcttt attcgtctcg gacacaaacg tgtagagcac aacatcgcgg aacactgacg
     1381 gcagcacgag caccgcgggc gtgtgcggcg tggccgtaaa gatcggtgcc actcccgcct
     1441 tcgccatcgc agatcgataa aacgcaacga gcgcttccat cgaactgcca agctcgagcg
     1501 gcaacgggct cc
//
LOCUS       DASWTX010000164         3440 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_67502, whole genome shotgun sequence.
ACCESSION   DASWTX010000164 DASWTX010000000
VERSION     DASWTX010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3440)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3440
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67502"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(238..2136)
                     /locus_tag="VGD38_02530"
     CDS             complement(238..2136)
                     /locus_tag="VGD38_02530"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propionyl-CoA synthetase"
                     /protein_id="HEY0726916.1"
                     /translation="MRGAYEAEYKAWQQDPEGFWARAAEAIHWYKKWDQVLDSSHAPF
                     YRWFSGGLVNTCYNLLDVHVANGRAEQAALIYDSPVTGNGKSYTYRELLHKVAHFAGA
                     LRKQGVAKGDRVIVYMPMVPEAVIAMLACARIGAIHSVVFGGFAADELATRINDARPK
                     LIVSASCGIEVNRVVPYKPMLDKAIESAQQKPARCIILQRPQLQADLVAGRDVEWRDA
                     VVQAEPVECVPVAATDPLYILYTSGTTGIPKGVVRDNGGHLVALKWSMKNIYGVEPGE
                     VFWAASDLGWAVGHSYIVYGPLLHGSTTILYEGKPVGTPDPGAFWRVISQHNVCALFT
                     APTAFRAIKREDHAGNYLRQYDLKKFRTLFLAGERCDPDTLAWAEKQLGVPVIDHWWQ
                     TETGWPIGANCTGLELLRVKPGSCGKAVPGYDVRVLDDDGAEVGENQIGNIAIKLPLP
                     PGCLPTLWNNDAAYVESYLETYPGYYKTADAGFKDEDGYLWIMSRTDDIINVAGHRLS
                     TGALEEVLAAHADVAECAVIGVADELKGEVPLGLVVLKVGVGRSPEEIVAELIHLVRE
                     KVGPVASFKLATVVNRLPKTRSGKIVRGTIKKIADGVEYRVPPTIEDATVLDEITANL
                     NAIGYPRT"
     gene            complement(2150..3058)
                     /locus_tag="VGD38_02535"
     CDS             complement(2150..3058)
                     /locus_tag="VGD38_02535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726917.1"
                     /translation="MRRSNVLLLFLLLLAAPCVAQTATTTTEIPFSFQKGLIIVEAKI
                     KGDVPVNVVLSTGMEHSRIDPALLQKYELNAYYAPDGPVTGRDDKVFSFTKVSGVKIG
                     NSKSKDLDLRFGAIAELSAMAGKEIFAALGADFFAGQILQVNFKNSVIRFLAQTPPEL
                     IDPKNPNFNATKATVLRMEPKPSELVRRTYMVALVKDVQMNGQKTNLLFDSGITTMLA
                     LSASTGKKIGMTVPAEKEPPRDDKVTLRLDANEFPDVAATIYAKGTGADQNLSKSGGA
                     VAGSFFLQQFVSTFDYKKGVIVLERF"
     gene            complement(3201..>3440)
                     /locus_tag="VGD38_02540"
     CDS             complement(3201..>3440)
                     /locus_tag="VGD38_02540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726918.1"
                     /translation="TGLLSFAAGESSKSFTVGITEDVEVEGNETFNLVLSDASGANLG
                     GPSTALVTIVDNDKGRGRIKTPRGFTSLSTKSLRE"
BASE COUNT          696 a          962 c          978 g          804 t
ORIGIN      
        1 cccacgcttt ttactaacca cctgcggcga ggcggagcct cgcctcacat ccggcggcgg
       61 agccgcagta aagagggttt tcgcgcaaag ccagttcaac ctttaggttg ttgttagagc
      121 aagctaaagc ttgaactcag aacgagagcc cctctttatg tgcagttgtt ttgagttcaa
      181 cctttaggtt gtgttttaga gcaagctaaa gcttgaactc agaacgagag ctctccttca
      241 ggtccgagga taaccgatcg cgttcaggtt tgctgtgatc tcgtcgagga ctgtggcgtc
      301 ttcgatggtt gggggaacgc ggtattcgac accgtcggcg atcttcttga tcgtgccgcg
      361 cacgattttg ccggaacggg ttttgggaag acgattcacg acggtcgcta atttgaacga
      421 agccactggc ccaaccttct cacgcaccag atggatcaac tcagcaacga tctcttccgg
      481 cgagcgtccg acgccgactt tcaacacgac caatccgagc ggcacttcac ccttcaattc
      541 gtcagcaacg ccaatgaccg cacactccgc aacgtccgcg tgtgcggcga gtacctcttc
      601 gagcgctcct gtcgataaac ggtgtccggc gacgttgatg atgtcgtccg tgcggctcat
      661 gatccacagg tagccgtctt catctttgaa tcccgcgtcc gcagtcttgt agtaaccggg
      721 atacgtttcg agatacgact cgacgtaagc ggcgtcgttg ttccagagag tcggcaaaca
      781 accgggcggc agcggcagct tgatcgcgat gtttccgatc tggttttcac ccacctcggc
      841 gccgtcgtcg tcgagtacgc gaacgtcgta gcccggcacc gctttgccac acgagccggg
      901 ttttacccgg agcaattcga gcccggtgca attggcgccg atgggccaac cggtttccgt
      961 ctgccaccag tgatcgatca cgggcacgcc gagctgtttc tcggcccacg ccaacgtgtc
     1021 cggatcgcaa cgctcgcctg ccaaaaacag cgtgcgaaac tttttgagat cgtattgccg
     1081 caggtaattg cccgcgtggt cttcgcgttt gatcgcgcga aatgcggttg gcgcagtgaa
     1141 cagcgcgcaa acgttgtgtt gcgagatcac gcgccagaac gcgccgggat cgggcgtgcc
     1201 gacgggcttg ccttcgtaaa gtatcgtggt gcttccgtgc agcaacggac cgtaaacgat
     1261 gtaagagtgc ccgacggccc aaccgagatc ggacgcagcc caaaacactt cgcccggttc
     1321 gacgccgtag atgtttttca tgctccactt cagcgcgact aggtgcccgc cgttatcacg
     1381 cacgacgcct ttcggaatgc cggtcgtgcc ggacgtgtag aggatgtaaa gcggatcggt
     1441 cgcggccaca ggcacacact caacaggttc ggcctggacc actgcgtctc gccactccac
     1501 atcacggccc gcaacgagat ctgcttggag ttgcgggcgt tgcaggatga tgcagcgcgc
     1561 gggcttttgc tgtgccgact cgattgcttt gtcgagcatc ggtttgtacg gcaccacgcg
     1621 attgacttcg ataccgcatg aagcggagac gatcagtttc ggacgcgcat cgttgatgcg
     1681 agtcgctaac tcgtccgctg cgaagccgcc aaagacgact gaatggatcg cgccgatgcg
     1741 cgcgcaagcg agcattgcga tcacggcttc cggaaccatc ggcatgtaga cgatcacgcg
     1801 atcgcctttt gcgacgcctt gctttcgaag cgcgcccgcg aagtgagcga ctttgtgcag
     1861 aagctcgcgg taggtatagg acttaccgtt tccggtgacg ggactgtcgt agatgagtgc
     1921 ggcttgttcc gcgcggccgt ttgcgacgtg cacgtcgagc aggttgtagc aagtgttgac
     1981 gaggccgccc gagaaccaac ggtagaaagg cgcgtgcgaa gagtctaaaa cctggtccca
     2041 cttcttgtac cagtgaatcg cttccgcagc ccgcgcccaa aaaccttcgg gatcttgctg
     2101 ccacgctttg tattccgctt cgtaagctcc tcgcatatat agaagacgct caaaatcgct
     2161 cgagcacgat gacgcctttt ttgtagtcga aggtcgagac gaattgttgt aagaagaaag
     2221 agcctgcgac cgctccgcct gacttgctca ggttctgatc ggcgcccgtg cctttggcat
     2281 agatcgtcgc cgccacatcc ggaaactcgt tcgcgtcgag gcgcaacgtg accttgtcgt
     2341 ctcgtggagg ctccttttca gcgggaacag tcatgccgat cttcttgccg gttgacgcgg
     2401 acaacgccag catagtcgtg atgccgctgt cgaaaagcag atttgttttc tggccattca
     2461 tctgcacgtc cttcacgaga gccaccatgt aagtccttcg aacaagctcg ctgggtttgg
     2521 gctccatccg caagaccgtg gcttttgtcg cgttgaaatt cggattcttg ggatcgatga
     2581 gttcgggtgg agtctgggcc agaaacctga tgacgctatt cttgaagttt acttgcagta
     2641 tttgacccgc aaagaagtca gctccaagag ccgcgaagat ctcttttccg gccatcgcgc
     2701 taagctccgc gattgcgccg aacctcaagt ccaagtcttt cgatttacta tttccgattt
     2761 tgactccact gacctttgtg aaactaaaaa ccttgtcgtc tctgcccgtc acgggtccgt
     2821 cgggtgcgta ataggcgttc aattcatact tctgcagcaa ggctggatcg attcgggaat
     2881 gttccatgcc ggtggacaga acgacgttga cgggaacgtc gcctttgatc ttggcttcga
     2941 cgatgatgag acccttttgg aacgagaacg ggatctcggt tgtggtggtt gcggtttggg
     3001 ctacgcaggg cgcagcgagt aacaggagga aaagaaggag aacgtttgat cgacgcattc
     3061 aaatctccgc gttcgaggga tcgacttgct tgcgaacaag ataatctatg tcagagccac
     3121 aaaaaagcac taaggcacga gaacgttgtt gcgttctgtg ccttttgtgc atcttcgtgg
     3181 ctttcagttc gtgttcgttc ttactcgcgc aggctcttgg ttgagaggct cgtgaagccg
     3241 cgtggtgttt ttatgcgtcc gcggcctttg tcgttgtcga caatggtgac cagggcggtg
     3301 cttggaccac ctaagttcgc gcctgaggcg tcactgagaa cgaggttgaa cgtctcgttt
     3361 ccttcgacct cgacgtcctc tgtaatcccc accgtgaaac tcttcgagct ttcgccggct
     3421 gcgaaagaaa gtaaaccggt
//
LOCUS       DASWTX010000165         2353 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_67503, whole genome shotgun sequence.
ACCESSION   DASWTX010000165 DASWTX010000000
VERSION     DASWTX010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2353)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2353)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2353
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67503"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..788
                     /locus_tag="VGD38_02545"
     CDS             <1..788
                     /locus_tag="VGD38_02545"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0726919.1"
                     /translation="LRTFENDAIEHTATAPQLNSLDQADLEDALTTWLEDHGVAEPWK
                     LSNNLVEAGIDAAALDKLLEQTGADAIVDVLVRVNSQLAAAKLAREIKTGTARISELV
                     AAIKEYSYMDQASVQKVDIHKGLESTLLILKYKLRKKNIILTREYADDLPPINAFGSE
                     LNQVWTNLIVNAVEAMQDGGTLKVRTRKEPTDIMVEIRDNGSGIPESAKSHIFEPFFT
                     TKPVGEGTGLGLDTVARIVRRHRGNVRFESRPGDTCFQVRLPF"
     gene            complement(767..1684)
                     /locus_tag="VGD38_02550"
     CDS             complement(767..1684)
                     /locus_tag="VGD38_02550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726920.1"
                     /translation="MFKGRTDWLADPENEANGLKEALRSFEMARGGLDNDGPLISALI
                     EIYVAEAVMARARVILFSSDASEKSFGEAQQMYDSARGALRRAQESLLGSHHHLMWRK
                     LFFRIRTQYYSDRLLLRYATLHARALKDKEPRETPRLGKLYYDDARERSRFYEENARD
                     ALLRLRRAYQTLVSALDLYLPHSAKNDPSNLKRFRWLYRMWWELTLCGYAIGRVAIDA
                     LHPDISPKAHDYVIHQLEWVNMADGVNDSALKRVFTKNRRRIEAQYKKSLKGTESESL
                     WETALNRRRNLILLANELSAKQIQNGSRT"
BASE COUNT          532 a          665 c          613 g          543 t
ORIGIN      
        1 cgctccgcac tttcgaaaac gacgcaatcg aacacacggc caccgcgcct caactcaatt
       61 cactcgatca ggccgatctc gaagacgcgc tcacgacgtg gctcgaagat cacggcgtcg
      121 cggaaccgtg gaaactttcc aacaacctcg tcgaagcggg gatcgatgcg gccgcgctcg
      181 acaagctgct cgaacaaaca ggcgcagacg ccatcgtcga cgtgctggtg cgcgtcaact
      241 cgcaacttgc ggcagcaaaa ctcgcgcgtg aaatcaaaac cgggaccgcg cgcatttccg
      301 agcttgtcgc cgcgattaaa gaatacagct acatggacca ggcgtcggtc cagaaagtgg
      361 atattcataa aggactggaa agcacgctgc tcatcctgaa gtacaagctg cgcaaaaaga
      421 acatcatcct gacgcgcgag tatgccgatg acctgccgcc aatcaacgca ttcggcagcg
      481 agctcaatca ggtatggacc aacttgatcg ttaacgcagt ggaagccatg caggatggcg
      541 gtaccctgaa agtgcggacg agaaaagagc cgactgacat catggtggaa attcgcgaca
      601 acggttcggg cattccggag tcggcgaagt cgcacatctt cgagccgttt tttacgacga
      661 aaccggttgg tgaaggaacc ggcctgggcc tcgacaccgt cgcgcgcatc gtgcgccgcc
      721 accgcgggaa cgtgcggttc gaatcaagac caggcgatac gtgttttcaa gttcggctgc
      781 cgttctgaat ctgtttggcg ctgagctcgt tagccaggag tatgagattg cgccggcggt
      841 tcaaggctgt ctcccaaagg gattcgcttt cggtaccttt gagcgatttc ttgtattggg
      901 cttcgatgcg tctacggttc tttgtgaaca ctcgtttcag cgctgagtca ttcacaccgt
      961 cagccatgtt tacccactcg agttgatgga tcacatagtc gtgtgctttg ggtgaaatgt
     1021 ccgggtgaag cgcgtcgatt gcgacgcgac ctatcgcata gccgcaaagc gtcaactccc
     1081 accacatccg atacagccag cgaaatcgtt ttaagttaga cgggtcgttt ttcgcggagt
     1141 gcggcaagta cagatcaagc gcggatacga gcgtctggta tgctcgtcgc aatctcaaca
     1201 acgcgtctcg tgcattctcc tcgtagaacc tgctgcgctc ccgcgcatcg tcataataaa
     1261 gtttgccgag cctgggtgtt tcccgaggct ctttgtcttt cagtgctctt gcgtgcaacg
     1321 tcgcgtaccg caacaacaag cgatcggagt agtattgtgt cctgattcga aagaatagct
     1381 tccgccacat caggtggtga tggctcccca acaaagactc ctgcgctcgt cgcagcgctc
     1441 cccgtgcaga gtcgtacatc tgctgcgcct cgccaaagct tttctccgaa gcgtcactgc
     1501 tgaaaaggat cacgcgagca cgggccataa cggcctcggc cacataaatt tctatcaacg
     1561 cggagatcaa tggaccatcg ttatccaaac cgcctcgggc catctcaaat gaacgtaaag
     1621 cttctttcaa accgttggct tcgttctccg ggtcagccaa ccagtcagtg cggcctttga
     1681 acatattaaa aagagatcgg tactgaagat acaaagccgc gtctgccgtc gggtgcaaaa
     1741 tcacgcttct gggcgccgcg cgagtgtgca catcccggcc gccgacctcc tccagccctt
     1801 gagtgatcac tcgctgagct tctctcactt cagcggccgt tagtttccat tcccggagat
     1861 caccggtgaa cccgtcgtga gaaaacattg agacatgccg gattcggctt tcagcttcaa
     1921 gatgaagcaa tcgcaaccat gcttcattgt agtcgttagc ctggcttgac gaacgttcgt
     1981 gacgactctt cggttttaaa tcgcgcagtc tccctttgat cgccagcaag agatccagag
     2041 tctccgtcgt tttagttttc agctcgtctt cgtcggaggt taattcctgt tgcgatttta
     2101 gtctgcagtt cgcgatgttc agtaactgat ggcactggcg aactcgacat tgcttaatca
     2161 gctctggaga atcctcaatc tgctgggtta tcgaacggtc gaccggaatt cccttcagag
     2221 ccggatcttt cagttttaac tgctttcgtt tctcctcacc caggctatgc cacaggtgtt
     2281 ttcgccggtg actgatacag gtcaaataat ccgaacgttc tatccagagc tggacctgaa
     2341 ggtcttggag aca
//
LOCUS       DASWTX010000166         3908 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_239957, whole genome shotgun sequence.
ACCESSION   DASWTX010000166 DASWTX010000000
VERSION     DASWTX010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3908)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3908)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3908
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239957"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..282)
                     /locus_tag="VGD38_02555"
     CDS             complement(<1..282)
                     /locus_tag="VGD38_02555"
                     /inference="COORDINATES: protein motif:HMM:NF017496.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Uma2 family endonuclease"
                     /protein_id="HEY0726921.1"
                     /translation="MSTKVEATIDDLYKVEGKAEIVNGEILIMSPTGILPAYVAGEIF
                     TSLRRYSKQQKLGHAMGDNLAYVVNLPHRKSLCPDVSLYVGKPTMKFAEG"
     gene            complement(295..1311)
                     /gene="moaA"
                     /locus_tag="VGD38_02560"
     CDS             complement(295..1311)
                     /gene="moaA"
                     /locus_tag="VGD38_02560"
                     /EC_number="4.1.99.22"
                     /inference="COORDINATES: protein motif:HMM:TIGR02666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEY0726922.1"
                     /translation="MKDVQNNPVLRDSYGRAIRDLRVSLTDRCNFRCFYCLPHGEPPI
                     APKEQMLSFEEIEYVCEIFVSLGIEKLRLTGGEPMLRRDIETIIRKLSRFKSSGLIDL
                     ALTTNGYFLPERARSLKEAGLDRVTISLDSLKGDVFKRMTGVDVLEKVLAGIAAAKEA
                     GLEPIKINAVIVRGHNETEVADFAAFAREHDVKMRFIEFMPLDSGHEWSRADVVSGKE
                     ICERISQRFPLVKVNVARGSETSARYRFADGAPGEVGIIAPVTEPFCGACSRIRLTAD
                     GQIRTCLFSTVEHSLRDVVRSGASRSEIVEYIESVILKKEPRHFINDPGFVAPSRTMS
                     FIGG"
     gene            complement(1339..2514)
                     /locus_tag="VGD38_02565"
     CDS             complement(1339..2514)
                     /locus_tag="VGD38_02565"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0726923.1"
                     /translation="MCLIHLIGGASRQTPHELSSRISQSTSDLIKRAFDDVDPARLVD
                     HHVHIAGLGSNGSRAFVNAKMRTWKHPFHRLKFKVYMSSTGVNDEHRADAQLFQRLTD
                     LVANIPNHGKHRLLAFDKNYRPDGSVKLNKTEFYVPNDYVFKLAEQHPDKFVPNISVN
                     PYRPDAIAELEKWARRGARVVKWLPNAMGIDPSDARCDPFYQKMKELDLILLSHGGEE
                     KAVEAEEDQKLGNPLLLRRPLDHGVKVIVAHCAGLGTNEDLDNPDRPQVPNFDLFLRL
                     MDEKRYEGLVFGEVSAMTQFNRLGKPLTTILERDDLHERIVNGSDYPLPAVNVLIRTR
                     PLVKHGYITANESNSLKEIYQYNPLLFDFVLKRTVKRPGTERRLPASVFMTNPALGV"
     gene            complement(2514..2951)
                     /locus_tag="VGD38_02570"
     CDS             complement(2514..2951)
                     /locus_tag="VGD38_02570"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEY0726924.1"
                     /translation="MPHEATNPKFVEEIKDSFSKQTIMALIGGELTRVEPGVVEITLP
                     YRTDLTQQHGYVHAGIITTIADSACGYAAYTLMPAGSDVLAVEFKVNLMRPAKGDTFV
                     ARAEVVKSGRTLTVVRADVHALSSGDKSELVAIMQGTMMRLQR"
     gene            complement(2951..3892)
                     /gene="queG"
                     /locus_tag="VGD38_02575"
     CDS             complement(2951..3892)
                     /gene="queG"
                     /locus_tag="VGD38_02575"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0052693 - epoxyqueuosine reductase
                     activity [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HEY0726925.1"
                     /translation="MSIKERALAEGFQKVGIIRAEPLAEEAPRLKEWLARGYHGEMSW
                     MARDVEKRLDPRELFTEARSIVVVALNYYTPDQHQENLTTGKVSRYAWGDDYHDVLKS
                     KLESLLAWIREQEPTAAGKVCVDIQPTLDKAWAVRAGLGWLGKHTNVITQEHGSWVFI
                     GELLLNLDLKPDDARIEDHCGTCTLCIDACPTQAITEPYVVDSNKCISYATIELRTQE
                     LPETIQQGLSGWLYGCDICQDVCPWNRFEEPTSETRFAAREGNVNAELDQIMELTPET
                     YAARFRGSAMKRAKLAGLQRNARALLSSKTTENSIAN"
BASE COUNT          834 a         1156 c         1032 g          886 t
ORIGIN      
        1 cccttcggcg aacttcatcg tcggtttgcc cacgtaaaga gatacgtcag ggcacaagga
       61 tttgcgatgt ggcaaattca caacgtaggc gaggttgtcg cccatcgcgt ggccaagctt
      121 ttgttgcttg ctgtacctgc gtagtgaggt aaaaatttcg cctgccacgt aagcgggcag
      181 gataccagtt ggagacatga tgaggatttc tccgtttact atttctgctt taccttcgac
      241 cttgtagagg tcgtcgatgg tagcttcgac tttggtgctc atatttcgca ttccttagcc
      301 gccgatgaag ctcatggtgc gtgagggcgc cacgaacccc ggatcgttga tgaagtgacg
      361 aggttccttc ttcaatataa cagattcaat atactcgacg atctcactac gcgacgcgcc
      421 gctgcgaacc acatcgcgca acgagtgctc gactgtcgaa aataaacacg tccgtatctg
      481 cccatccgcc gttaaccgga tacgcgaaca cgcgccgcag aacggctcag tcaccggagc
      541 aatgattcca acctcacccg gcgcgccgtc tgcaaaacga taacgcgcgg aagtttccga
      601 gccacgcgca acattaactt tgacgagggg aaatcgttgg ctgatccgtt cgcaaatctc
      661 tttgccggaa accacatccg cacgcgacca ttcatgccct gaatcaagcg gcatgaactc
      721 aataaaacgc atcttcacat cgtgctcgcg tgcaaacgcc gcaaagtccg cgacttcagt
      781 ttcattatgc ccgcgcacga ttactgcatt gatcttgatc ggttcgagcc ccgcttcctt
      841 cgccgccgcg atccccgcaa gcaccttctc caacacatcc acacccgtca tgcgtttgaa
      901 aacatcacct ttcaaactgt cgagactgat cgtgacgcga tcgagcccgg cttcctttaa
      961 cgaccgcgcg cgctcgggaa gaaagtaacc attagtcgtt aaagcaagat cgatcaaccc
     1021 cgaacttttg aaccgggaca acttgcggat gatcgtctcg atatcgcgcc gcagcatcgg
     1081 ctcgccgccc gtcaaacgca gcttctcgat cccgaggctc acaaagatct cgcaaacgta
     1141 ctcgatctct tcaaacgaaa gcatctgctc tttgggagca atcggcggtt cgccgtgcgg
     1201 caggcagtag aagcagcgaa agttacagcg gtcagtcagc gacacgcgca ggtcgcgaat
     1261 cgctcgcccg taagaatctc gcaaaaccgg attgttctga acgtctttca ctgcccgtca
     1321 tgatagtcca aaagcgagct aaacaccgag cgcggggttg gtcatgaaga cgcttgccgg
     1381 aagtcgccgt tcagtgcccg gcctctttac cgtgcgtttc aagacaaaat cgaaaagtag
     1441 cgggttgtac tggtagattt ctttcagcga attgctctca tttgcggtga tgtaaccgtg
     1501 cttcacgagc ggccgcgtgc gaatcagaac gttcacggcc ggcaacggat aatcgctgcc
     1561 gttaacgata cgctcgtgca ggtcgtcgcg ctcgaggatc gtcgtcagcg gcttgcctaa
     1621 gcggttgaac tgcgtcatcg ccgacacttc gccgaacacg agtccctcgt aacgtttctc
     1681 gtccatcagc cgcagaaaca gatcgaagtt cggaacctgc ggacgatcgg ggttgtcgag
     1741 atcttcgttt gttcccaaac ccgcgcaatg cgccacgatc accttcacgc cgtgatcgag
     1801 cgggcgccgc aagagcagcg gattgccgag tttctgatcc tcctccgctt caacggcctt
     1861 ctcctcgccg ccatgactca acaggatcag atcgagctcc ttcatcttct ggtaaaacgg
     1921 atcgcaacgc gcatcggaag gatcgatgcc catcgcgttc ggcaaccact tcaccacgcg
     1981 ggcgccgcgc ctggcccact tctcgagctc agcgatcgca tccggccggt atgggttcac
     2041 cgaaatgttc ggcacgaact tgtccgggtg ctgctcggca agtttgaaaa cgtaatcgtt
     2101 cggcacataa aactccgtct tgttgagctt gacggagcca tcaggacgat agtttttatc
     2161 gaaggccagc agccggtgtt tgccgtgatt gggaatgttt gcgacgagat ccgtgaggcg
     2221 ttgaaagagt tgcgcgtcgg cgcgatgttc gtcgttcacg ccggtggagc tcatgtagac
     2281 tttgaacttg agacgatgaa acgggtgctt ccacgttctc atcttcgcgt tgacgaacgc
     2341 gcggctgccg tttgagccga gtccggcgat gtgcacgtga tgatcgacga gccgcgccgg
     2401 atcgacgtcg tcaaaagcgc gtttgatgag atcggacgtg ctttgactaa tcctgctcga
     2461 aagctcgtgc ggcgtttgcc tggacgctcc gccgatgaga tgaatgagac acattaacgt
     2521 tgcaggcgca tcatggtgcc ttgcatgatc gctacgagtt cgcttttgtc gccgctgctc
     2581 aacgcgtgaa cgtcagctct cacgactgtc agcgttcgcc ccgacttaac gacttcggcg
     2641 cgcgcgacaa acgtatcacc cttcgcgggc cgcatcaggt tcactttgaa ctcaaccgcc
     2701 agcacatccg agcccgccgg catcagcgtg tacgccgcgt agccacaagc agaatccgcg
     2761 atcgtggtga tgatacccgc atgtacgtac ccatgttgct gggttaagtc agtgcgataa
     2821 ggcaaagtga tttcgacgac gcccggttcg acgcgcgtaa gctcgccgcc gatcagcgcc
     2881 atgatcgtct gtttagaaaa actgtctttt atttcttcaa caaactttgg attagttgct
     2941 tcgtgcggca ttagttagcg atagagtttt ccgttgtctt acttgaaagc agcgcgcggg
     3001 cgttgcgttg cagaccggcg agcttcgcgc gtttcatggc gctgccgcga aagcgtgcgg
     3061 cgtaggtctc gggcgtgagc tccatgatct ggtccagttc ggcgttgacg tttccttcgc
     3121 gcgcggcgaa gcgtgtctcg ctggtcggtt cttcaaagcg gttccacgga caaacgtcct
     3181 gacagatgtc gcagccatac aaccaacccg aaagtccctg ctggatcgtt tccggcaact
     3241 cctgcgtgcg cagttcaatc gtcgcgtaag aaatacactt gtttgaatca accacgtacg
     3301 gttcggtaat cgcctgcgtc ggacacgcat cgatgcagag cgtacatgtg ccgcagtgat
     3361 cttcaatacg cgcgtcgtca ggcttcaggt cgagattcaa caacagttcg ccgatgaaaa
     3421 cccacgaccc atgctcctgc gtgatcacgt tcgtatgttt gccgagccaa cccaatcccg
     3481 cacgcaccgc ccacgcctta tcgagcgtcg gttgaatatc aacacagact ttccccgccg
     3541 cggttggttc ctgttcccgt atccacgcca gcagtgattc gagtttcgac ttcaaaacat
     3601 cgtgatagtc gtcgccccac gcgtaacgcg acactttgcc tgtagtcaaa ttttcctggt
     3661 gttgatcggg cgtgtagtaa ttgagggcaa caacgacgat cgagcgcgct tcggtaaaca
     3721 gttcgcgcgg atcgagacgc ttctccacgt cgcgcgccat ccacgacatt tcgccgtgat
     3781 agccgcgagc cagccactct ttcaatcgcg gcgcttcctc cgcgagcggt tccgcgcgga
     3841 taatcccgac cttctggaag ccttcggcga gcgcgcgttc ttttatcgac aacgtatcca
     3901 cggactac
//
LOCUS       DASWTX010000167         2031 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_284054, whole genome shotgun sequence.
ACCESSION   DASWTX010000167 DASWTX010000000
VERSION     DASWTX010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2031)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2031)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2031
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284054"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            588..1070
                     /locus_tag="VGD38_02580"
     CDS             588..1070
                     /locus_tag="VGD38_02580"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HEY0726926.1"
                     /translation="MNTKRQQGFSLIELLIVVAIIGIIAAIAIPNLLASKRAANEGSA
                     QSSLRTIHSSEAVYQSTAGDGDYGDLAALLGQNLVDSVLGAGTKSGYTFAATADNTVN
                     PVNFYATARPTNTAAITRTGNRSFSIAEDGVLRGKVADVGPANHAEAITTATWPALGN
                     "
     gene            1344..1826
                     /locus_tag="VGD38_02585"
     CDS             1344..1826
                     /locus_tag="VGD38_02585"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HEY0726927.1"
                     /translation="MKTNRQQGFSLIELLIVVAIIGIIAAIAIPSLLASRRAANEGAA
                     QSALRTIHSAQITYQATGGNGAYAANVGTLLGQRLVDPVLGTGTKSGYDFVIVDQAGT
                     HATAVFGVYGFPSVTTGVSQTGTRAFGMTEVGVLRGDTDLGALPASRADINALPPLEN
                     "
BASE COUNT          442 a          623 c          537 g          429 t
ORIGIN      
        1 cgtaagcttc aagaaacaga agttgggcta tgcccctggt tcgggctctg ccctatactg
       61 ttgggccata ggccgtacca ggggcatagc ccgtttcttt ttgtcaaaag gctccggcga
      121 ggcgtagcct cgcctcacat ccggcggcgg agccgcggcg cgtggttcac atctcgcggc
      181 gaagccgcgg cgcgtggttc acatctcgcg gcgaagccgc ggcgcgtggt gcacatccgg
      241 cggcgaagcc gcgcgtggtg cacatctggt ggcgaagcgt aatttgctgg aagttagctg
      301 cagagtttcc agttttttaa gcactcactg actaaaaaac agtacctgcc ggaaagcgtc
      361 atcaaccccc tgccagaatt tgtcagagcc tttgctgctt ctctcccgcc actcaaaatt
      421 tcgatcaaaa aagatcgctt ttttgctctt ttgggcgaaa tgccgattgg cacagtggtt
      481 gttctagggc aaaccgacac ttcgcgctct gcgcggctca cagtgacgaa agccggtggc
      541 gcgagaaaac taggaacccc taaattttta aggagcacca aactcgaatg aacaccaaac
      601 gccaacaagg cttttcgttg atcgaacttc tcatcgtcgt cgcgatcatc ggcatcatcg
      661 ccgccatcgc tatccccaac ctgctcgctt cgaagcgcgc tgctaacgaa ggctccgcgc
      721 agtcgtccct ccgcacaatc cacagctctg aagccgtgta tcagtcgacc gccggcgacg
      781 gcgattatgg cgacttggcg gctctcctcg gtcagaatct cgtcgacagc gttctcggcg
      841 cgggcacgaa gagtggttac acgttcgccg ccactgccga caacactgtg aacccggtta
      901 acttctacgc gacggcacgt ccgacgaaca ctgcagctat tacccgtacc ggtaaccgca
      961 gcttctcaat cgcagaagac ggcgttctcc gcggcaaggt tgcagacgtt ggcccagcca
     1021 accacgctga agccatcacg accgcgactt ggccggcatt gggtaactaa ttcccgacaa
     1081 tactcaccgg cagtcaattc gactgctgac cgtcaagagg gtggaagctc tgctccaccc
     1141 tctttgcctt tttggaccaa cagcagccgg gttggaccat gacacattac gacacgcgct
     1201 actgccgctt tttgtcagcc tctaccacga aacagccgca gatgcgcgtt aatgcgtgtg
     1261 gcacatactt tgttaagtac aacgaatgaa acgtcgcggg cccgtgcgga attctgacgc
     1321 gagttaagga gtcacctcca aaaatgaaaa ccaatcgcca acaaggcttc tcactgatag
     1381 agcttctcat tgttgttgcg attatcggca tcattgccgc catcgcgatc cccagcctcc
     1441 ttgcctctag acgcgcagct aacgaaggcg ccgcgcaatc agcgctacgc accatccaca
     1501 gcgctcaaat tacttatcag gcaacaggcg gaaatggcgc gtatgccgca aacgtcggca
     1561 ccctgctggg gcagaggttg gtcgatccgg tgctcggcac cggcaccaag agcggctatg
     1621 acttcgtgat tgtggaccag gccggaactc atgccacggc agtcttcggc gtttacgggt
     1681 ttccgagtgt taccacgggt gtttcgcaaa cagggacgcg cgccttcgga atgacagaag
     1741 tcggcgttct gcgtggcgac accgatctgg gcgcgttacc ggcatcgaga gcagacatca
     1801 atgctcttcc gcctctcgaa aactaacgca cgctagcgaa accaaaggta gaaacgtgag
     1861 ttctcgcgta ctcgaaagtc acgagacaag aagctggtcc atcgccgcct cacctgaggc
     1921 gaaacgcatc gcgctggtcg ttgcagtttc actggccgcg gtcgttcccg ttttagtctt
     1981 cggcgttccc tcaaatcgcg acctctcgaa tcacttccgt tttgcccttc c
//
LOCUS       DASWTX010000168         2092 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_110966, whole genome shotgun sequence.
ACCESSION   DASWTX010000168 DASWTX010000000
VERSION     DASWTX010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110966"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1022
                     /locus_tag="VGD38_02590"
     CDS             <1..1022
                     /locus_tag="VGD38_02590"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY0726928.1"
                     /translation="WETDYDWRKCETKLNALPQFMTEIDGLDIHFIHVRSKHENALPL
                     IVTHGWPGSTLEQLKIIDPLTNPTAHGGSASDAFDVVIPSMPGYGFSGKPTAPGWDPI
                     RIARAWVELMKRLGYTRFVAQGGDWGAIITDYIGTLAPPELLAIHTNMPAAVPAEVSS
                     ALQVGGPAPEGRSAEEKSAFDHLAFFYKKGLGYALEMANRPQTLYGLADSPVGLAAWM
                     IDHDWRSYELIARVFDGASEGLTRDDIVDNITHYWLTNTGVSSARLYWEFKGAFFAPK
                     NVTVPVAVSAFPDELYQAPRSWVERAYSNLIFYTKHDKGGHFAAWEQPQYIIEDVRAA
                     FKSLR"
     gene            1036..1668
                     /locus_tag="VGD38_02595"
     CDS             1036..1668
                     /locus_tag="VGD38_02595"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY0726929.1"
                     /translation="MSEQTKAQPDMKLEVVMLAVADVDRAKAFYEKLGWRVDIDFSLG
                     NFRGVQVTPHASGASIIFGKGVTPSTPGTTLVLAVTDVDAARADLVARGVDVSEVFHV
                     AAGPFNDTVENPRVAGRDPEGRSYLSFASFNDPDGNTWLLQEITQRLPGRIDSGVTSY
                     GSVGDLAGALRRAETAHGEYEKRTGERDVNWPEWYAQFMASEQNGQKPPQ"
     gene            1665..>2092
                     /locus_tag="VGD38_02600"
     CDS             1665..>2092
                     /locus_tag="VGD38_02600"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HEY0726930.1"
                     /translation="MTRNLLIGIVVGVVVVTASVYVTGLSKTLLMPFFSTTEFKSSES
                     AAAPELAKGDWLNSEPLTLANLRGRVVLIDFWTFGCINCRNTLPSLKSWHDRYRDKGL
                     TIIGVHSPEFDEEKDADNLRRAVASLGISYPVVTDNDYQS"
BASE COUNT          430 a          623 c          620 g          419 t
ORIGIN      
        1 attgggagac agactacgat tggcgcaagt gcgagacgaa gctgaacgct ctaccccaat
       61 tcatgactga gatcgatggg ctcgacattc atttcatcca cgttcgttcg aagcatgaaa
      121 atgcgttgcc gctcatcgtc acgcacggat ggcccggctc aacactcgag caactcaaga
      181 tcatcgatcc cctgacgaac ccgacagcac atggcggcag tgcgtcagac gctttcgacg
      241 tcgtgattcc gtcaatgccc ggctacggct tttccggaaa gccaactgcg ccgggttggg
      301 atccgatccg catcgcgcgc gcgtgggtcg agctgatgaa acgtctcggg tacacgcgct
      361 ttgtggccca gggcggtgat tggggtgcaa tcattaccga ctacatcggc acgctcgcgc
      421 cgccggagtt gcttgccatt cacaccaaca tgcccgccgc ggttccggcc gaagtctcga
      481 gtgcgctgca agtcggcggc ccggcgccgg aaggtcgctc cgccgaggag aaaagcgcgt
      541 tcgatcacct cgccttcttt tataagaagg gcctgggtta cgcgctcgag atggcgaacc
      601 gcccgcagac gctctacggt ctcgcggatt cacccgttgg tctggccgcg tggatgatcg
      661 accacgactg gcgcagttac gaactcatcg cacgcgtctt cgacggcgcg tcggaaggac
      721 ttacacgaga cgacatcgtc gacaacatca cgcactactg gttgacgaac acgggcgtgt
      781 catcagcgcg tctgtattgg gaattcaagg gcgccttttt cgcgccgaag aacgtgaccg
      841 ttcccgttgc cgtgagcgcg tttcccgacg agctttatca ggcgccgcgg agttgggtgg
      901 agcgcgcgta ctcgaatctc atcttctaca ccaagcacga caagggcggg cacttcgctg
      961 cctgggaaca gccgcagtac atcattgaag acgtgcgcgc ggcattcaag tctttacgat
     1021 aaagaacaaa cagccatgag cgaacaaaca aaagcacaac cagacatgaa gctcgaggtc
     1081 gtaatgctgg ccgttgccga cgtcgaccgc gcaaaagcgt tctacgaaaa actcggctgg
     1141 cgggtcgaca tcgatttctc gcttggcaac ttccgaggtg tgcaggtaac gccgcacgcc
     1201 tcgggagcct cgatcatttt cggcaagggt gtcacgcctt ccacaccagg tacgacgctg
     1261 gtcctggcgg tgactgacgt tgacgcggcc cgcgccgacc tggtcgcgcg cggcgtggac
     1321 gtgagcgagg tctttcacgt cgctgctggt ccattcaacg acaccgtcga gaacccgcgt
     1381 gtcgcagggc gcgatccgga aggccgctct tacttatcgt ttgcgtcgtt caacgatcct
     1441 gacgggaata cctggttgct gcaggagatc acgcagcgtc ttcccggccg catcgactcc
     1501 ggtgtgactt cttacggctc agtgggcgac ctcgccggcg cgcttcggcg tgcggagacc
     1561 gcgcacggcg agtacgagaa gcgcaccgga gagcgcgacg tcaactggcc cgagtggtac
     1621 gcgcaattca tggcgtcgga acagaacggc cagaagccgc cgcaatgaca cgcaatctgt
     1681 taatcgggat cgttgtgggt gtcgtcgtcg ttacggcatc ggtgtacgtc acaggtttgt
     1741 cgaagacatt gttgatgcct ttcttcagca caaccgaatt caagagctcg gaatccgcgg
     1801 cggctcccga actggccaag ggcgactggc tcaactcgga accgttaaca ctcgcgaacc
     1861 tgcgcgggcg tgtggtgttg atcgacttct ggaccttcgg ctgcattaac tgtcgcaaca
     1921 cgttgccttc acttaaaagc tggcacgatc gctatcgcga caagggactc accatcattg
     1981 gtgtccattc gccggagttt gacgaggaaa aggacgccga caaccttcgc cgcgctgttg
     2041 cttcattggg gatcagttat ccggtagtca ccgataacga ttatcaatcg tg
//
LOCUS       DASWTX010000169         5449 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_240030, whole genome shotgun sequence.
ACCESSION   DASWTX010000169 DASWTX010000000
VERSION     DASWTX010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5449)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5449)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5449
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240030"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..531
                     /locus_tag="VGD38_02605"
     CDS             <1..531
                     /locus_tag="VGD38_02605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726931.1"
                     /translation="EQLISAVENGKLDLGVDRTALVQEFIPPRDGHITRVETLGGKYL
                     YAINVFTTGDTFNLCPADICQTTDGVELTRAACPVDAPRSGLRVEAFGPPREVIRAVE
                     RIVQAAQIDVGGVEYIVDDRDGSLLYYDINALSNFVADAPRVIGFDPHARLVDFLQEE
                     IRRCATVTGSRFSAVG"
     gene            489..1094
                     /locus_tag="VGD38_02610"
     CDS             489..1094
                     /locus_tag="VGD38_02610"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEY0726932.1"
                     /translation="MRYGYWLPVFGGWLRNVEDEGMEASWNYVSKLARRSEQLGYDLT
                     LIAELNLNDIKGVEAPSLDAWSTAAALAAVTTTLELMVAVRPTFHQPALLAKQAANID
                     HIGGNGRLSLNVVSSWWADEARKYGVEFEQHDDRYARTREWLEIVERLWQEDHFSYAG
                     RYYRVEDAVLQPKPTTRPRPTIYAGGESEAAKELISRWCDA"
     gene            complement(1034..1324)
                     /locus_tag="VGD38_02615"
     CDS             complement(1034..1324)
                     /locus_tag="VGD38_02615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726933.1"
                     /translation="MLEFRSRQPLLVILVTGRKLLTFVTRSSSRLASASVFRTIAYAA
                     TPNFIGGNPSRSLRCDMSRTFSRTRDGSSPCITYASHQREISSFAASDSPPA"
     gene            1379..1534
                     /locus_tag="VGD38_02620"
     CDS             1379..1534
                     /locus_tag="VGD38_02620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726934.1"
                     /translation="MGTPDQVASRVAEFEDAGVDLLLLQCSPQLEEMERFAETVIALD
                     RCTPVHV"
     gene            complement(1497..2462)
                     /locus_tag="VGD38_02625"
     CDS             complement(1497..2462)
                     /locus_tag="VGD38_02625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726935.1"
                     /translation="MRSASMRRELEMHRYVTRKSIACFVVFVTTAVVSITVFSVRWTT
                     RHSCGRLADVAPRQPPAKADPAPAAQREEPQQLIDIFGEEDISYNGYELRHLTEKVSD
                     EQVRDLEVSYAALMKDNRRLLKFDGVYFGEGNSTWLGLFDLLGNGSQQFIVSQTVPRG
                     GRHWVVSVSSQARVLFDSFDYGVGREEFYVIDIDKDSVHEIVLPVTAFYEMQDKMYIG
                     EIPLPEIIFKYDAKARKYLPANHLFLDYALHGIEADIAKLHTADDSNYLSLRLKILLR
                     YVYARKAKSGWDFFERKYQRPDKAQITARIRSVLRRAPVYNDRAR"
     gene            complement(2923..4089)
                     /locus_tag="VGD38_02630"
     CDS             complement(2923..4089)
                     /locus_tag="VGD38_02630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726936.1"
                     /translation="MHWVEQIIGALLMLLILLDVFLTVLYARADAGILSHRVAFLVWW
                     LFKTLSKPFEHQRALILSFCGPAVLVALIVVWALGLTLAAALIIHPELGTAVQATSGD
                     TSRNFITALYVGGGSVSIVGVSDFTPHTAKMQMIFLFNSLVGMSVTFLTLTYLMQVYT
                     ALSRRNTLGLNVHLASAETGDGAELVAHLGPEGKFETGYTTLSALATDMAKAKESHHF
                     YPVLVYFRFREPFYSVSRFTLVSLDAVTLIKSALHDKEYRWLKNSGAVEQLWDGATML
                     LETIAKAFMPNETRSSPHAPDEDTCELWRRRYFAALRTLREAGIKTVDDEQAGAEFYV
                     HLRRQWNDYITHMGPMMAYTTEDVDPVGYRTELADERQSFGRQASHSLPLQPHS"
     gene            complement(4120..4341)
                     /locus_tag="VGD38_02635"
     CDS             complement(4120..4341)
                     /locus_tag="VGD38_02635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726937.1"
                     /translation="MTTDPKTNEQDEPRQGGDAMSEAEIDYNVMASFPASDPPSWTLG
                     VRPHKTSCEEFEGEKPSATDPSHQNQPPD"
     gene            4483..4941
                     /locus_tag="VGD38_02640"
     CDS             4483..4941
                     /locus_tag="VGD38_02640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726938.1"
                     /translation="MEPQPTDPNAALVDIEQRMRTVRIIWMALVVNIGLFYFLTRVAE
                     RPENNEPNDTLSLALLAAGVSTVLVSFVVKSKLIGRAIEQRQVQQVQQGYVVAWAMSE
                     VAALLGLLDFFITSDPYFYALLIIAALGQLFHFPRREHFENASFNPPINL"
     gene            5000..>5449
                     /locus_tag="VGD38_02645"
     CDS             5000..>5449
                     /locus_tag="VGD38_02645"
                     /inference="COORDINATES: protein motif:HMM:NF023431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3500 domain-containing protein"
                     /protein_id="HEY0726939.1"
                     /translation="MKRKAVIAGLCLPVLITAGWMWLAAKQQPRRVATTPAPPLPVQP
                     ASPSDVTGKTVAAAQAFLATLDDAGRTKVSFPFDSDQKSKWSNFPPGIYPRNGLRLGD
                     LSARQRDAVFALLATALSQRGLKKVKEIMEGDEVLKNSEEGSAGAPRR"
BASE COUNT         1152 a         1559 c         1581 g         1157 t
ORIGIN      
        1 gagcagctca taagcgccgt cgaaaacggc aaactcgatc tcggcgtcga tcgaacagcg
       61 ctggtccagg agttcattcc accacgcgac ggacacatca cgcgcgtcga aacactcggc
      121 ggcaagtatc tctacgccat caacgtcttc accaccggcg acacgttcaa cctctgcccc
      181 gccgacatct gccaaacgac cgacggcgtt gaactgacac gcgccgcatg ccccgtcgat
      241 gccccgcgct cgggtttgcg tgtcgaggcg tttggaccac ctcgcgaagt tatcagggca
      301 gtggaacgaa tcgttcaagc ggcgcagatc gacgtcggcg gcgtcgagta catcgtcgac
      361 gatcgcgacg gctcgctgct atattacgac atcaacgcgc tttcaaactt tgtcgctgat
      421 gcaccgcgcg tgatcggctt cgatccgcac gcgcgcctcg tcgactttct gcaagaggag
      481 attagaagat gcgctacggt tactggctcc cggttttcgg cggttggttg agaaacgtcg
      541 aagacgaggg aatggaagcg agttggaact acgtcagcaa gctcgcgcgc cgcagcgaac
      601 agctcggcta cgatctgacg ctgattgctg aactcaatct caacgacatc aagggcgtcg
      661 aagcgccgtc gctcgacgca tggtccaccg ccgctgcgct cgccgcagtc acgacgaccc
      721 tcgagttgat ggtcgcggtg cgtccgacgt ttcatcagcc ggcgctactc gcaaagcagg
      781 ccgcgaacat cgatcacatc ggcggcaatg gccggctttc gttgaacgtc gtctcgtcgt
      841 ggtgggccga cgaagcacgg aagtatggcg tcgagtttga acagcacgac gatcgttacg
      901 cgcgcacgcg tgagtggctc gagatcgtcg agcgcctctg gcaggaagat catttttcgt
      961 atgcgggaag gtactatcgc gttgaagatg cggtgttaca accgaaaccg acgacgcggc
     1021 cgagaccgac gatctacgcg ggcggtgaat ccgaagcggc gaaggaactg atctcgcgct
     1081 ggtgtgatgc gtaagtgatg cacggcgacg aaccgtcgcg cgtgcgtgag aaggttcgcg
     1141 acatgtcgca acgcagagaa cggctcggat tgccgccgat gaagtttggc gtggcggcgt
     1201 atgcgatcgt gcgaaacacg gaagccgagg cgagacgcga gctcgaacga gtgacgaacg
     1261 tcaacagttt gcggccggtt acgagaatta ccagcaatgg ctggcgggaa cgaaactcga
     1321 gcaacaggtt tcgctcgaag attacagtgt ttcgaatcgt ggtctacgct cgggactggt
     1381 gggcacaccg gatcaggtcg cgtcgcgcgt ggcggagttt gaagatgccg gcgtggactt
     1441 gttgctgttg cagtgtagtc cgcaactgga ggagatggag cggtttgctg agacggttat
     1501 cgcgctcgat cgttgtacac cggtgcacgt ctgagcaccg atctgatcct ggccgttatc
     1561 tgcgctttgt cgggccgttg atacttgcgc tcgaagaagt cccagccgga cttcgctttg
     1621 cgcgcgtaaa cgtaacgcag caggatcttg agccgtagcg agagatagtt tgagtcatcc
     1681 gcggtgtgta gtttcgcgat gtctgcttca atgccgtgga gcgcgtaatc gagaaagaga
     1741 tgattcgcgg ggaggtactt ccgtgctttc gcgtcgtact taaagatgat ctccggtaac
     1801 ggaatctcgc cgatgtacat cttgtcctgc atctcgtaaa aggcggttac cggaagcacg
     1861 atttcgtgga cgctgtcttt gtcgatgtct atcacgtaaa actcttccct gcccacgccg
     1921 tagtcaaagc tgtcgaatag cacacgcgcc tgtgacgaca cactgacgac ccagtgcctt
     1981 ccgccgcgcg gcaccgtttg cgaaacgatg aactgctgcg agccgtttcc gaggagatcg
     2041 aacaacccta accaagtgct gttgccttct ccgaaataca ctccatcaaa cttcagcagc
     2101 cgccggttgt ctttcatcag cgcggcgtaa gagacttcaa gatcgcgaac ctgttcgtcg
     2161 ctcaccttct cagtcaggtg tcgcagctcg tagccgttgt acgagatgtc ttcttcacca
     2221 aagatatcga tgagctgttg cggttcttct cgctgcgcag cgggcgcggg atcagccttc
     2281 gctggtggtt gacgtggcgc cacgtcggcg agtcgcccgc aactgtgacg cgttgtccac
     2341 cgaacgctga acacagtgat cgaaacaacc gccgtagtaa cgaagacgac gaaacaggcg
     2401 atcgatttgc gggtgacgta acggtgcatt tctaactcgc ggcgcatgct agcggagcgc
     2461 attcgtcagc acaaccgtgc tacccacacc cagtagtgcg tcagttcaaa cggagaggtt
     2521 cagagttcag cctttaggct gctgccgcac aagctaaagc ttgaactcgc tttgtcctcc
     2581 gtacttcggc tctgcaaacc cttcttgctt cggctctgcc gccggatgtg aggcgaggct
     2641 ccgcctcgcc gtcaagttag cttatgaaaa tgggctacgc ccctggtacg gcctatggcc
     2701 caaagggctg agcccgaacc aggggcacag cccccacttt cttttactaa ccgcctccgg
     2761 cgaggcggag cctcgcctca catccggcgg cagagccgaa ggaagagtct tcacccattc
     2821 gccacgttcc ctgaccgaga acaggtatcg gccttcctga aggcaacagc gtggtcctta
     2881 ctttcggcgc gttattgagt tctttcatgt tttcacctga cgttacgagt gtggttgaag
     2941 cggcagacta tgcgacgcct gccgtccaaa cgattgccgc tcatcagcaa gctccgtgcg
     3001 gtagccaacc ggatcgacgt cttccgtcgt ataggccatc atcggtccca tgtgagttat
     3061 gtagtcattc cactgccggc gcaagtgcac gtagaactcc gctcctgcct gttcgtcatc
     3121 tacagtttta atcccagcct cgcgcagcgt gcgcaaagcg gcgaaatagc ggcggcgcca
     3181 caactcgcac gtatcttcat ccggcgcatg cggcgagctg cgcgtctcgt tgggcatgaa
     3241 cgctttcgca atagtttcca acagcatcgt cgcgccgtcc cacagttgtt caaccgcgcc
     3301 ggaatttttc agccagcgat attccttgtc gtgaagcgcg ctcttgatca gcgtcaccgc
     3361 gtcgagagac acgagcgtga agcgagagac ggaataaaac ggttcgcgaa aacgaaaata
     3421 gaccaacacc gggtagaagt ggtgcgattc cttcgccttc gccatgtccg tcgccagcgc
     3481 tgagagagtc gtataacccg tctcgaactt tccttcggga ccgagatgtg cgaccagctc
     3541 ggcgccatcg cccgtctccg cagatgcgag atgaacattc aggcccagtg tgtttctccg
     3601 actcaaagcc gtgtacacct gcatcaggta ggtcaacgtc aaaaacgtga ccgacatacc
     3661 gacgagcgag ttgaagagaa agatcatctg cattttcgcc gtgtgcggcg tgaagtcgct
     3721 cacgccaact atcgagacac taccacctcc gacgtacagc gcggtgatga agttgcggct
     3781 cgtgtcgccg ctcgtcgctt gcactgctgt gccgagttcg ggatgaatga tcagcgccgc
     3841 ggcgagtgtt agtcccaaag cccacaccac gatgagcgcc acgagaacgg ctggaccaca
     3901 gaacgaaagg atcagggcgc gctggtgttc aaaaggtttc gaaagggttt tgaaaagcca
     3961 ccacacgagg aaagcaacgc gatggctaag gatgccggcg tcggcgcgtg cgtagagtac
     4021 cgtgaggaac acgtcgagca gtatgagcag catcaacagc gccccgatta tctgctcaac
     4081 ccagtgcatt gctatttacc tcgtcgcgat cgccgccgat caatccggcg gttggttttg
     4141 atgggaaggg tcggtcgccg acggcttttc tccctcaaat tcttcgcagg aagtcttgtg
     4201 cggtctgacg ccgagcgtcc acgacggcgg atcgcttgca ggaaaacttg ccatgacgtt
     4261 gtagtctatt tccgcctcgc tcatggcatc gccgccctgt cgcggctcgt cttgttcgtt
     4321 ggtcttcggg tcggtggtca tggtccgagg ctagcagcgt gctgctacat aaactcttcg
     4381 aaagtgtgat cgtttcttct tgcacgaatt gctgccgtgg cgtaaaaggt catgaaagtc
     4441 gtttaaaacg tttcatcacc cgtgctacag agagtgaaca ctatggaacc acaaccgacc
     4501 gatccgaacg ctgcgctagt ggacatcgag cagagaatgc gcacggtgcg tatcatttgg
     4561 atggctctcg tcgtaaacat cggcctcttc tacttcctta cgcgtgttgc cgagcggccg
     4621 gaaaacaacg agcccaacga cacgttgtct ttagcgctgc tcgccgccgg agtttcaacc
     4681 gtgctggttt cttttgtggt caagagtaag ttaattggtc gagccataga acagcggcag
     4741 gttcaacagg tccaacaagg ttatgtagtc gcgtgggcga tgagcgaggt agcggcgctg
     4801 ctcgggctgc tcgatttctt cattacgagc gacccgtact tctacgcact gctcatcatc
     4861 gcggccctcg ggcagttgtt tcactttccg cgccgcgaac acttcgaaaa cgcgtcgttt
     4921 aatccgccga taaacttgta acaaaaagcg cttacttctc cgacacaatg cgtgttgtgc
     4981 ctgcgctgga gaaccaatca tgaagcgaaa agccgtgatc gccgggctgt gtttgcctgt
     5041 ccttataaca gcgggatgga tgtggctggc ggccaagcaa cagccgaggc gagtggcgac
     5101 aacgcctgcg ccgccgttgc cggtccaacc ggcttcaccg tcagacgtta cgggcaagac
     5161 tgtcgcggcc gcgcaagcgt ttctcgcgac gctcgacgac gcgggccgca caaaagtgag
     5221 ctttcctttc gacagcgatc agaaaagtaa gtggtccaac ttcccgcccg gcatctatcc
     5281 gcgcaacggg ctgcgcctcg gcgatctgag cgcccggcaa cgcgatgctg tgtttgcgtt
     5341 gttggccacg gctttgagtc aacgcggtct gaaaaaagtg aaagagatca tggaaggcga
     5401 cgaggtattg aagaactctg aagaaggaag tgctggtgct cctcgtcgt
//
LOCUS       DASWTX010000170         6853 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_392260, whole genome shotgun sequence.
ACCESSION   DASWTX010000170 DASWTX010000000
VERSION     DASWTX010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6853
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392260"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..276)
                     /locus_tag="VGD38_02650"
     CDS             complement(<1..276)
                     /locus_tag="VGD38_02650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726940.1"
                     /translation="MSRINWKQICALFLLASMAYTTLSCAVASSNELYFGKTSPPDRN
                     IFRYVTGDEPETLDPAVSDGQPEARIYMALYEGLVEYHPKTMEPIPAL"
     gene            complement(347..1000)
                     /locus_tag="VGD38_02655"
     CDS             complement(347..1000)
                     /locus_tag="VGD38_02655"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-methyltransferase"
                     /protein_id="HEY0726941.1"
                     /translation="MKARVDAIIQLEQAEYLNGLHAQGDRLLAEMEAYAAEHRVPIAD
                     PEVALFLEITARATKAKRALEIGMAIGYSVIHLARGMGDDGVVVTIEPSDEMIKAASG
                     YFERANLSDRVQIKRGKALDVMPHLTDTFDLLYLDAVKEEYAQYLDLGLPLLKSGGVV
                     IVDNLLWGGRVAQPASANDESSTTALREFNPHFINHPQLRSEILSVGDGLGYAVKIS"
     gene            complement(1015..2466)
                     /locus_tag="VGD38_02660"
     CDS             complement(1015..2466)
                     /locus_tag="VGD38_02660"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY0726942.1"
                     /translation="MRKDSLRLMIVDDEEAARYGMRRALTTLGYNITEAGSAEAARAL
                     LKQNDSDLLLLDVNLPGLSGLDFLRELKSQNGNAPLVIIVTAHGSERMAVEAVKAGAH
                     DYLSKPFEVDDLRLVVKNAAETLQLRRENYSLRRRIEVERSQRGALIGNSQAMQRVRS
                     MIDKVAETDATVLVRGESGTGKELVARELHERNSARRNGSFVAVNCAALPSELIESEL
                     FGHEKGAFTGAAARREGKFEQADGGTLFLDEIGDMSANVQAKLLRALEERRIERLGAN
                     ETIPVDVRIVSATHRPLEQEITNGNFRADLFYRLRVVTVDIPPLRERREDIPMLAETF
                     VRLAAERYDLPERGLSQGTLKRLFEYAWPGNVRELKNTIDRAVIMAEGDEITPRDLPD
                     EITAGLPLGAVEDGDESDGLRVPFTADFREDRREFERRYITRCLEHTHGNVTRAAEIL
                     DMHRQSLQHKLRQLGLGRRYVTVGENGHENSDG"
     gene            complement(2614..3222)
                     /locus_tag="VGD38_02665"
     CDS             complement(2614..3222)
                     /locus_tag="VGD38_02665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726943.1"
                     /translation="MHRKVLSLILLTLFLVCGAQAQSAQTETTDDTNLETQLYMILGT
                     NQDVTDSKIPNSLDPVLKQLRGNLPFKNYKLAGTLINRVKNEGRLELGWISAPLTSVT
                     DPTQPTTRSSFRMRQIKLARNSEGQSMVQVVGFAFSASIPIQSVAIAANNPPAPIFNY
                     EGATLSTDISMREGEPVIVGTLNVGPSGDAIILVLAAKRTTK"
     gene            complement(3294..4919)
                     /locus_tag="VGD38_02670"
     CDS             complement(3294..4919)
                     /locus_tag="VGD38_02670"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEY0726944.1"
                     /translation="MLDLENLLFPVAILVVVIGFLIALMLISRNYIKVSPNEAAVISG
                     RSRKLADGTVVGYRLVRGGATLIVPFLEKVEYLNLNVLTVPLATSRAYTVQGVPVSVK
                     AVANVKIKGDDDSMRAAAERFLGMKPEEFHKLVFQTLEGHLRAILGTLTVEEINNDRQ
                     SFAQKLTTEAAGDLEKMGIGLDALTIQEISDEEGYLDALGKRRTAEVQRDAEIGQAEA
                     LRDSKIKAALAMQEGERVRLASEADIAASTRATEVKRAQFQAEIKREQATAEQAGPLS
                     EAKARQEVVAEEVRVEKIRTQEQIAVQEQEVLRREKELEATVVKKAEAERRARVLLAQ
                     GQQEAAILEAEGQKQALIAAAEAQSQKLEREGAGRASAIEAEGRAEAEKIRALGLAEA
                     AKIEAQGLAQAKAVEAQGLAEAAAIKEKAAAWREFNDAARLQTILEKLPSIIEATAPA
                     LKAVSEPLGNIEKVVMIDHGGDGNGGGNGGLNRFAQTGPTMIYALLQQLQALGLNVPD
                     ILKQLGTTNGEEVKIATPIKTKEKEVIENKNSD"
     gene            complement(4935..5498)
                     /locus_tag="VGD38_02675"
     CDS             complement(4935..5498)
                     /locus_tag="VGD38_02675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HEY0726945.1"
                     /translation="MPEFLANITPLAVFLVIAAIGFVFLLISLVVGDIFDSFGFETGI
                     DTGADGHALLDSRVLSVFVTAFGGFGVIGIQSGLSIIASSLLGLGGGIVLGGLVSLFG
                     RFLYKQQSSSSVTTAQLVGRSAQVIVSIAPGNLGQVSCRIGEERVEKLARARDNREIK
                     AGAMVRVEEVAGDSLIVSPYESTYHEN"
     gene            complement(5584..>6853)
                     /locus_tag="VGD38_02680"
     CDS             complement(5584..>6853)
                     /locus_tag="VGD38_02680"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0726946.1"
                     /translation="TVVLTVYVFGIRTIGDWMTQRYGVRPGLVEALLILALALLAAPL
                     RGWLAQCFHKLFEREAALYKEIVSRIGAYAGQYKDLPDLLHFVEERTTQALGLRKLNI
                     FTDVSDPWVKETLELSQANGWEPVEDEPLLSEHGFRIAYPMRREEKVEGLLAVEASNA
                     TLTTDVRSVMELLAGQVAIAIDDSRLLEENLRLERELAERERLASLGRMAATVAHEIK
                     NPLSAIKSIAQVMREDEQLNHEYERDLRLIVGETDRLSQSVTQLLSFARKESAAEQPL
                     GVDELLHSVIDLFRANAREQGISLDCEVRSDITLTGKCVSALRDATSNLLLNALQATP
                     SGGRVKVVAEATNGELSITVEDSGVGVPPDMRERIWEPFFTTRQRGTGLGLAIVRKRV
                     QEVGGSASLDSASNGRGAVFQLRLPLDLVA"
BASE COUNT         1334 a         2017 c         1943 g         1559 t
ORIGIN      
        1 gagcgccggg atcggttcca tggttttcgg atgatattca accagtcctt cgtaaagcgc
       61 catgtaaata cgcgcttcgg gttggccatc gctgacggcg ggatcgagtg tttccggttc
      121 gtcgccggtt acataacgaa agatgtttct gtcgggagga gaggttttgc cgaagtaaag
      181 ctcattgctt gacgcaacgg cgcatgacag cgtcgtgtaa gccatcgacg cgagcaaaaa
      241 gagcgcacaa atctgcttcc agttgatacg gctcatcgcg gaacctccct caacagtccc
      301 gcgaacttat cacgcgagag aagtttttat caagatggtc ctgtatttag gagatcttaa
      361 cggcgtagcc taaaccgtcg ccgaccgaca ggatttcgga tcgaagctga gggtgattga
      421 tgaagtgagg attgaattct cgcagggcgg tggtggagct ttcgtcgttt gcgctagcgg
      481 gttgcgcgac ccttccgccc caaagcaggt tgtcgacaat cacgacgcca cctgatttca
      541 aaagcggcag accgagatcg agatattgcg cgtactcttc tttcacggca tcgaggtaga
      601 gaagatcgaa agtgtcggtg aggtgcggca tgacgtcgag cgctttgccg cgtttgatct
      661 gaacacgatc tgagaggttg gcccgttcga agtaaccgga cgcggctttg atcatctcat
      721 cgctcggttc gatcgtgacg acgacgccgt cgtcgcccat gccgcgcgcg agatgaatca
      781 cggagtagcc gatggccatt ccgatctcca gcgccctctt cgctttggtc gctcgggcgg
      841 tgatttcgag gaacagagcg acctcgggat cagcaatggg cacgcggtgc tctgccgcgt
      901 acgcttccat ctccgctaat aaccgatccc cttgcgcgtg cagaccattg agatattccg
      961 cctgctcgag ctgaataatc gcgtcaaccc tggctttcat gcactaaaaa tctgtcaccc
     1021 gtctgaattt tcatgcccat tctcgcccac tgtaacatac cggcgaccca atccgagttg
     1081 gcgcagtttg tgttggagcg actgccggtg catgtcgaga atctcggccg cgcgggtcac
     1141 gttgccgtgc gtgtgttcga gacaacgcgt gatgtagcgg cgctcgaact cccgccggtc
     1201 ctcacgaaaa tcagccgtga acggcacccg caaaccgtca ctctcgtcgc cgtcttcaac
     1261 cgcccctagc ggcaagccgg cagtgatctc atcgggcaaa tcgcgcggcg tgatctcgtc
     1321 gccttccgcc atgatcacgg cgcgatcgat cgtgttcttc agttcgcgca cgttcccggg
     1381 ccaggcatat tcaaacagac gcttcaacgt gccctggctg agaccgcgtt ccggcaaatc
     1441 gtaacgctcc gccgccagac gcacaaatgt ctcggcgagc atcggaatgt cttcacgccg
     1501 ttcgcgcaac ggcggaatgt cgaccgtcac cacgcgcaaa cgatagaaca gatccgcgcg
     1561 gaagttaccg ttggtgattt cctgttcgag cgggcgatgc gtagcgctga cgatgcgcac
     1621 gtcgacgggg atcgtttcat tcgcgccgag gcgttcgatg cggcgttctt ccaacgcgcg
     1681 cagcagtttc gcctgcacgt tcgcgctcat gtcgccaatc tcgtcgagaa acaacgtgcc
     1741 gccatcggcc tgctcgaatt tcccctcccg ccgcgctgcg gcgcccgtaa atgcgccctt
     1801 ttcgtggcca aacagctcgg attcgatcag ctccgaaggc agcgccgcgc aatttacagc
     1861 cacaaacgaa ccgttgcgcc gcgcgctgtt tctttcgtga agctcgcgcg cgacgagctc
     1921 ttttcccgtg ccggattcgc cgcgcacgag cacggtcgcg tcggtttcgg cgaccttgtc
     1981 gatcatgctg cgcacgcgtt gcatcgcctg cgagttaccg atcaaagcgc cgcgttgcga
     2041 acgctcaact tcaatccgcc gtcgcaggga ataattttcg cggcggagtt gaagtgtttc
     2101 ggcggcgttc ttcacgacca gccgcagatc gtcgacctcg aaaggtttgg aaagatagtc
     2161 gtgggcgcct gctttgacgg cttcgacggc cattcgttca gaaccgtgtg cggtgacgat
     2221 gatgacgagc ggcgcatttc cgttttggct tttgagttcc cgcaggaaat cgagaccgct
     2281 cagtccgggg aggttcacgt cgagcagcag gaggtctgaa tcgttttgtt tgaggagagc
     2341 ccgggcggct tcggcggaac ctgcttcggt aatgttgtaa ccgagtgtgg tcagggcccg
     2401 ccgcatgccg taacgagcgg cttcttcgtc atcaacaatc attaatcgca acgaatcttt
     2461 tctcacttcc gggtaagttt agagccttca gtcgcgaatt ccctagcgcg tgctgtgcca
     2521 gagagcagga tattgatact ggtctatctt gtctgtcctc gggtgatagg acacttttgt
     2581 ctgtgttcgt atgacaggcg ggagtggcct gccctactta gtggtccgtt tcgccgcgag
     2641 gacgaggata atcgcgtcgc ctgaagggcc gacgttcaac gtgccgacga tcactggttc
     2701 gccttcacgc atgctgatgt cagtggacaa ggtcgcgcct tcataattga agatcggggc
     2761 cgggggattg tttgccgcaa tcgccacgga ttggatcgga atcgacgcgc tgaaagcgaa
     2821 gccgactacc tgcaccattg actggccttc gctgttacgc gcgagcttga tctgccgcat
     2881 tctgaacgag ctgcgcgttg tcggttgcgt tggatcggtt acagacgtga gcggcgcgct
     2941 gatccaacca agctcgagtc ttccttcgtt tttcactcga ttaatcaagg tgccggcgag
     3001 cttgtaattc ttgaacggca ggttcccgcg cagttgcttg agaaccgggt cgagtgaatt
     3061 cggaatctta gagtcggtga cgtcctggtt tgttcccagg atcatgtaga gctgtgtctc
     3121 gagatttgta tcgtcggtgg tctcagtttg cgcagattgg gcctgagcgc cacaaacaag
     3181 aaacagagtg agcagaataa ggctcagaac ttttcgatgc attacgcttt ctccttcagg
     3241 cccggaattg ggccgcggat taacacgcaa ctacagtcgt aaagttccca cagttaatcg
     3301 gagttcttgt tttcgatgac ttctttctct ttcgttttaa ttggcgtggc gatttttact
     3361 tcctcgccgt tcgtggtgcc gagctgtttg agtatgtccg gcacgttgag tccgagcgcc
     3421 tgcaactgtt gtaaaagcgc gtagatcatt gtcggaccag tctgcgcgaa acggttcaaa
     3481 ccgccgttgc cgccgccgtt tccatcgccg ccgtgatcga tcatcacgac tttctcgatg
     3541 ttccccaacg gttcggaaac cgctttcaac gcgggcgcgg tcgcttcaat gatgctcggc
     3601 agtttctcga ggatcgtttg caggcgcgcg gcgtcgttga actcacgcca ggcggcggct
     3661 ttctccttga ttgccgcggc ttcggcgaga ccctgtgctt cgactgcctt cgcctgtgcc
     3721 aaaccctgcg cctcgatctt cgccgcttcg gccaatccca gcgccctgat tttttcggct
     3781 tccgcacggc cttcagcttc gatcgccgat gcgcggcctg caccctcgcg ttccagcttc
     3841 tggctttggg cttcggcagc tgcgatcaat gcctgctttt gtccctcggc ttcgagaatc
     3901 gcagcttcct gttgtccctg cgcgagcaac acgcgagcac gccgctcggc ttcggccttc
     3961 ttaacaacag tcgcttccaa ctctttctcg cgtcgcagaa cttcctgctc ctggaccgcg
     4021 atttgttcct gcgtccggat tttttcgacg cgaacttcct cggcgacgac ctcttgccgg
     4081 gcttttgctt cagacagtgg accagcctgt tctgctgtcg cctgctcgcg tttgatctcg
     4141 gcctggaact gcgctcgctt tacttcggtc gctctcgttg aagccgcaat gtcagcttcc
     4201 gaagcgagcc gaacgcgctc accttcctgc atcgccaacg ccgctttgat tttcgagtcg
     4261 cgcagtgctt cggcctggcc gatctcggcg tcgcgttgca cttcggcggt tcgtctctta
     4321 ccgagcgcat cgaggtaacc ttcttcgtct gagatttcct ggatcgtcag agcgtcgagg
     4381 ccgatgccca tcttttcaag atcgccggcc gcttccgtag tcagcttctg agcgaagctc
     4441 tgtcggtcgt tattgatctc ctcaacagtc aacgtgccga gaatcgcgcg caagtgacct
     4501 tcgagagtct gaaagacgag cttgtgaaac tcttcgggtt tcatgccgag gaagcgctca
     4561 gcggctgcgc gcatcgagtc gtcgtcgcct ttgatcttga cgttcgccac agcctttacc
     4621 gataccggaa cgccctgcac ggtgtaggcg cgcgaagtgg cgagtggcac tgtgaggacg
     4681 ttgaggttga gatactcaac cttctcgaga aaaggaacga tcagcgtcgc gccgcctctg
     4741 acgagccggt aaccgacgac cgtcccgtcg gccaacttgc gtgaacgtcc ggagatgacg
     4801 gcggcttcat tgggagaaac tttgatgtag tttcggctga tcaacatcaa agcgatcaaa
     4861 aagccgatca ctacaacaag aatcgcaaca gggaatagta ggttctctaa gtcgagcatc
     4921 gcaaatacct caaactagtt ttcgtggtaa gtagattcgt aaggactgac gatgagtgaa
     4981 tcgccagcaa cttcttcgac gcgcaccatg gcgcctgctt ttatctcgcg attgtcgcgc
     5041 gcacgcgcca gcttctcgac gcgttcttcc ccgatgcggc aactcacctg acccagattt
     5101 ccgggcgcga tcgaaacgat cacctgggcc gatcggccga cgagctgagc cgtcgtgaca
     5161 gagctcgacg actgttgctt gtaaagaaag cgtccgaaca gtgaaacgag gccgccgaga
     5221 acaataccgc cgcccaaccc caacaacgaa ctcgcgataa tcgagagccc cgattggatt
     5281 ccgataacgc caaagccgcc gaacgcagtg acaaacacgc tgagcacgcg gctgtccaaa
     5341 agcgcgtgac cgtcagcgcc cgtgtcgata ccggtttcga atccgaagct gtcgaaaatg
     5401 tctcccacca ccagggatat cagcagaaac acgaatccga tcgcggcgat cacaaggaaa
     5461 accgccaaag gggtgatgtt tgcgagaaat tcaggcactg agtttaactc cttcgagtcg
     5521 agatttcggt ccctgaagaa cgggcctaag catcggtgaa gacgtattcg tcctgtaaga
     5581 ctatcacgcg acgagatcaa gaggtagacg aagttgaaaa actgcgccgc gtccgttgct
     5641 ggcggagtcg agtgaagccg agccgccgac ctcctgcacg cgcttgcgaa caatggccaa
     5701 accgagcccg gtgccgcgct ggcgggtggt gaaaaagggc tcccaaatac gttcgcgcat
     5761 gtcgggcggc acgcccacgc cgctgtcctc gaccgtgatc gacagctcgc cgttcgtagc
     5821 ttcagccacg actttcacgc gcccgccgct cggcgtcgct tgcaaagcat tcaagagcag
     5881 gttcgacgtg gcatcgcgca aagcggagac gcattttccg gttaacgtga tgtcggatct
     5941 gacctcgcag tcgagactaa ttccctgctc gcgtgcgttt gcgcgaaaca gatcgatcac
     6001 tgagtgcagc aactcgtcga cgcccagcgg ctgttcggcc gcactttcct tgcgcgcaaa
     6061 gctcagcagt tgcgtgacgc tttggctcag gcgatcggtc tcgccaacga tcagacgcag
     6121 atcgcgctcg tactcgtgat tgagctgttc gtcttcgcgc atcacttgcg cgatcgattt
     6181 gatcgccgaa agcgggttct tgatttcgtg ggctacggtc gcggccatgc ggccgagtga
     6241 cgcgagacgt tcgcgttcgg cgagctcgcg ttccagccgc aggttttctt caagtagtcg
     6301 agaatcgtcg atcgcgatcg ccacctgacc cgcgagcagt tccatcactg agcgtacgtc
     6361 ggtagtcaag gtggcgttgg aagcctcgac cgccagcagg ccttcgacct tttcttcacg
     6421 ccgcatcgga tacgcgatcc tgaatccgtg ttctgacaac agcggttcat cttcgaccgg
     6481 ctcccagccg ttggcttgcg acagctcgag agtctctttc acccacggat cagaaacgtc
     6541 agtgaagatg ttcagcttgc gtaatccaag cgcctgcgtc gttcgttctt cgacgaaatg
     6601 cagcaggtcg ggaaggtctt tgtattggcc tgcgtaagcg ccgatgcgcg aaacgatctc
     6661 tttgtagagc gcggcttctc gttcgaagag tttgtggaaa cattgggcca gccagccgcg
     6721 cagcggcgcc gccagcaacg cgagcgcgag gatcagcagc gcttcgacca gtcccggcct
     6781 gacgccgtag cgctgcgtca tccagtcgcc gatggtgcgt atgccaaaca cgtaaacggt
     6841 caacacgacc gtc
//
LOCUS       DASWTX010000171         4359 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_306053, whole genome shotgun sequence.
ACCESSION   DASWTX010000171 DASWTX010000000
VERSION     DASWTX010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4359
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306053"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1946
                     /locus_tag="VGD38_02685"
     CDS             <1..1946
                     /locus_tag="VGD38_02685"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HEY0726947.1"
                     /translation="GETLAERNQTQWKFELNPKSFAVVSYQIYMQTKQAANGGNTVPV
                     TKTMGDIANDLGINTLTPAERTVSVTLEYAPEDLQKPSGPPRTAAEIERVLAGAAYRT
                     FLVLRDAKVQPCQFRDQDIDDLTESNRRALFAAYGADLNVGSMLTDDNVEIFGVSGLQ
                     LVESVEISVTSDSDGQTNQTSTERDKEIEELLNEKYKPRLLAQPGLIVTNDILEKDVR
                     QLYLVRSVSEVPKYSFEDGVLTYEVKRRREIVNLTLTGAGSYSPEYALNGSLAFAGDN
                     LLGRSESISLSLTGGNSFQKGSLNFSIPRENPKVRRKIPITFAGFNLNGNYSYDSDQT
                     LGNPILTRFTNRESKISTSVSFEYDSFTQRDYVEQAEGLSDDRKRLHHLVTTDLGFDL
                     QNNNLKSDGLIPVAPLDGRVVYPSLSLKYLATYDLRRAEQKGGIGEIDFLFTADAQKG
                     FTGLGGDFSYNQYVLTGGVQMFFGFKAPTDLFLRYMRGTGASSNGTPLYKLFRLGGPQ
                     NMRGLEEGEFVGNSYAYDRSEFGVALLPLVRTIRKLFPGGRKPKDPNTGEPAPINFGG
                     LDLANTYVKVFYDRGRVFETKALGEILNPAHGVKGYGIAAELRGIAFINSARANLTIG
                     YARSPDSLLHRRGTVVTGLSLDF"
     gene            1983..3257
                     /locus_tag="VGD38_02690"
     CDS             1983..3257
                     /locus_tag="VGD38_02690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726948.1"
                     /translation="MNGLSLNFNGETRVFGPDGKVLVNATPKGTWRTQPLTNEPKDNQ
                     IRYDINGQAQPPVPVKYSFNPQNQLQAVILAAANGGADSAPFTFLGSIQIDDAQDIVY
                     SLITPEGTAMQRNVTLYGGLRFDQKTHNLVIDLTGGGTAEVKGDSGVASLDALKQDIT
                     PFKANDLLRFKASTTNTLANGQTKKIAADMKFVGNWDLKGNQLVFVSQVKGDINKPTV
                     TLGFAGKFKAVSAGLAYFADEQGTQFAFTINGQHTWNSGKANWDVFLGYSKKQFTAKV
                     SGNVSIRPGANRGLTLNADWVIEHTDGSKTNLEMNLSAAYVWSDKKMLAIQAQFARNG
                     QTLTYDLKVEGKFVFKSGTLTFQVKYNNQDPDNKFSFQIAFTANPTDLIKALSIVLNV
                     TENSVNINFQFEMRMTWVDGKLQKSAPQPIAA"
     gene            3206..4132
                     /locus_tag="VGD38_02695"
     CDS             3206..4132
                     /locus_tag="VGD38_02695"
                     /EC_number="4.1.3.3"
                     /EC_number="4.2.1.41"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF012904.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009436 - glyoxylate catabolic process
                     [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HEY0726949.1"
                     /translation="MGGRQTTKERSSADRGLRSILLPTATPFSDAEELDLDALGSNIR
                     KWRQAGISGFVLLGSTGERVHLEESEYLRTLETARAEIPADGACIAGVGQHSTRGTIA
                     EIGKAVQCGADAVLVLTPHYYRSAITQDALVDHYRAVADASSVPVLLYSMPALTGIKI
                     EPETIARLSEHENIIGVKDSSNDVAGFAQTVKLCPPEFAVLTGNGTILLDALQAGATG
                     GILAVGCVVPELCLELFNAFHRDDQQRASSLQAKLTPLAAAVTTKYGIGGLKAALDLA
                     GYHGGSVRAPLRPPDASAREEIARLFNDVQKI"
BASE COUNT         1024 a         1329 c         1164 g          842 t
ORIGIN      
        1 ccggcgaaac actcgccgag cgcaatcaaa ctcagtggaa gttcgaactc aatccaaagt
       61 cgttcgcggt cgtctcctac cagatctaca tgcaaacaaa acaagcggcg aacggcggca
      121 acaccgttcc ggtcaccaaa acaatgggcg acatcgcaaa cgacctcggc atcaacacgc
      181 tcacgcctgc cgaacgcacg gtcagcgtaa ccctggagta cgcgccggaa gacttgcaga
      241 agccgagtgg tccgccgcgc accgctgccg aaatcgagcg cgtgctcgcg ggcgccgctt
      301 atcgaacatt tctcgtactc cgcgacgcga aagtgcagcc gtgccagttt cgcgatcaag
      361 acatcgacga cctcacggaa tccaaccgcc gcgcactttt cgccgcttac ggcgcggatc
      421 tgaatgtcgg ttcaatgttg accgacgaca acgtggagat attcggtgtc tccggtttac
      481 agctcgtcga gagcgtggaa atcagcgtca cttcggacag tgacgggcag actaatcaga
      541 cgtccaccga aagagacaag gagatcgagg aactcttaaa cgagaagtac aaaccccgcc
      601 tgttggccca gcccggactc atcgtcacaa acgacattct cgaaaaagac gtgcgccaac
      661 tctacctcgt gcgcagcgtg agcgaagtgc cgaagtattc ctttgaagac ggagtgctca
      721 cgtacgaggt caaaagaaga cgcgagatcg tcaatctcac actcaccggc gcgggttctt
      781 actcacccga atacgcgctc aacggatcgt tggctttcgc tggcgacaac ctactcggcc
      841 gcagtgaatc aatttcatta agcctcaccg gcggcaactc ctttcaaaag gggtcgctca
      901 atttctcgat cccgcgcgag aacccgaaag tgcgacgcaa gatacccatc accttcgcgg
      961 gcttcaatct caacggcaac tattcctacg actcggacca gactttggga aacccgatcc
     1021 tgacgaggtt cacaaaccgc gagtcgaaaa tctcaaccag cgtctctttc gagtacgatt
     1081 cgttcaccca acgcgactac gtcgagcagg ccgaaggact atccgacgat cgcaaacgcc
     1141 tgcatcatct cgtcaccact gacctcggat tcgacctgca aaacaacaac ctgaaatccg
     1201 acggcctgat ccccgtggcg ccgctcgacg gccgtgtcgt ttatccatcg ctgagtctga
     1261 agtatttggc gacttacgat ttgcgccgcg cagaacagaa aggcggcatc ggcgagatcg
     1321 attttctgtt taccgcggac gcccagaaag gtttcaccgg cctgggcggt gacttctcgt
     1381 acaaccaata cgtgctcacc ggcggcgtcc agatgttttt cggcttcaaa gcgccgacgg
     1441 atctgtttct gcgttacatg cgaggcacgg gcgcatcgag caacggcacg ccgctatata
     1501 aactttttcg tcttggtgga ccacaaaaca tgcgcgggtt ggaagaaggc gagtttgtcg
     1561 gcaacagtta tgcttacgac cgctcggagt ttggcgtcgc attattaccg ctcgtgcgaa
     1621 cgatcagaaa gctgtttccc ggcggccgga aacccaagga tccgaatacc ggcgaaccag
     1681 caccaatcaa ctttggcggt ctcgatctcg caaacacgta cgtgaaggtc ttctacgatc
     1741 gcggccgcgt cttcgaaaca aaagcgctcg gcgagattct caatccggcg cacggcgtca
     1801 aaggttacgg cattgccgcg gaactgcgcg gcatcgcatt catcaacagt gcacgcgcga
     1861 atctcactat cggctacgcc cggtctcccg actcgctgct ccatcgtcgc ggaactgtag
     1921 tcaccgggct ttcgctcgat ttttaacgac aatcaatttg agtcccattc aaggagaaca
     1981 tcatgaacgg cttgagtttg aactttaacg gagaaaccag agtctttgga ccagatggaa
     2041 aagtgctcgt gaacgccacg ccgaaaggaa cgtggagaac tcaaccgctc acgaacgagc
     2101 cgaaggacaa tcagattcgc tacgacatca acggacaagc gcagccgccc gtgcccgtca
     2161 agtacagctt caatccccag aaccaactgc aagccgtcat tctggctgct gccaacggcg
     2221 gcgctgattc cgcgcctttc accttcctcg gctcgatcca gatcgacgac gcgcaggaca
     2281 tcgtctactc gctgatcacg cccgaaggca ccgcgatgca gcgcaacgtc acgctctacg
     2341 gtggcctgcg gttcgatcag aagacccaca acctcgtgat cgatctcacc ggcggcggaa
     2401 ctgccgaagt caaaggcgac agcggcgtcg cgagtctcga cgcgttgaaa caggacatca
     2461 cgcctttcaa agccaacgac ctgctgcgct tcaaggcgag cacgaccaac actctcgcca
     2521 atggacaaac caagaagatc gcggccgaca tgaagttcgt cggcaactgg gacctgaaag
     2581 gcaaccagct cgtgtttgtg tcgcaggtga aaggcgacat caacaaaccg acggtcactc
     2641 tcggattcgc cggaaagttc aaagccgtca gcgccggcct ggcttacttt gccgacgagc
     2701 agggaacgca gttcgctttt acgatcaacg gccagcacac gtggaacagt ggcaaagcaa
     2761 actgggacgt gtttctcggt tattcgaaga agcagttcac cgcaaaggtg agcggcaacg
     2821 tgagcatcag gcctggcgct aaccgcggcc tcacgctcaa cgccgattgg gtgatcgagc
     2881 acacggacgg ttcgaagacg aacctcgaga tgaacttgtc cgccgcgtac gtctggtccg
     2941 acaagaaaat gctcgcgatc caggcgcagt tcgccaggaa cggccagacg ctcacgtacg
     3001 atctcaaagt cgaaggtaag tttgtcttca agtccggcac tctgacgttt caggtcaagt
     3061 acaacaacca ggatcccgac aacaagttct catttcagat cgcgttcacc gcaaacccga
     3121 cggaccttat caaggcgctg tcgatcgttt tgaatgtgac ggaaaacagt gtaaacataa
     3181 acttccagtt cgaaatgaga atgacgtggg tggacggcaa actacaaaag agcgctcctc
     3241 agccgatcgc ggcctgagga gcatactgct tccgactgct actccgttca gcgacgctga
     3301 ggagctcgat ctcgacgcgc tcggaagcaa cattcgcaag tggagacagg cgggcatctc
     3361 cgggtttgtg ttgttgggtt caaccggcga gcgtgtgcac ctcgaagaga gtgaatactt
     3421 gcgcacgctc gaaaccgcgc gcgccgagat tcctgctgac ggcgcgtgta tcgcgggcgt
     3481 cgggcaacac agcacacgcg gcacgattgc cgagatcggc aaagcggtcc aatgcggcgc
     3541 tgatgcggtg ttggtcctca cgccacatta ctaccgttcg gcgatcacgc aggacgcctt
     3601 ggttgatcac tacagggccg ttgccgatgc gtcgtccgtt ccggtgctgc tctacagcat
     3661 gcctgcgctc accgggatca agatcgaacc ggaaacaatc gcgcgtctga gcgaacatga
     3721 gaacatcatc ggtgttaaag acagttccaa cgacgtcgcg ggttttgcgc agacggtgaa
     3781 actgtgcccg ccggagttcg cagtgctgac cggaaacggc acgattttac tcgacgcgtt
     3841 gcaagccgga gcgaccggcg ggattctcgc tgtcggttgt gttgtccctg aactctgcct
     3901 tgaactcttc aacgcattcc atcgcgacga ccagcaacgc gcgagctcgc tacaagccaa
     3961 actcacgccc ctcgcagccg cagtcaccac aaaatatggc atcggcggtc tgaaagccgc
     4021 cctcgatctg gccggctatc acggcggctc cgtccgcgcc cccctgcgcc ccccggacgc
     4081 cagcgcccgc gaagagatcg cgcggctctt caatgacgtc cagaaaattt agatcccgcg
     4141 ctctgaaacg ttttcttcgt tctcaccatt actgtttgat cgtcttttat tcttcacgtt
     4201 cgcggaggtc tccagtgaag ttgcaccttc tttgcgtggt cttgctcgtc gcctttaact
     4261 catcgttagt aatggctcaa tcggaccagg ccccggcccc gacgccggcc ccgacgccga
     4321 ttcagattac tgttaccgag gtgtgggcgg atggagccc
//
LOCUS       DASWTX010000172         6350 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_349536, whole genome shotgun sequence.
ACCESSION   DASWTX010000172 DASWTX010000000
VERSION     DASWTX010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6350)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6350)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6350
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349536"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            149..1099
                     /locus_tag="VGD38_02700"
     CDS             149..1099
                     /locus_tag="VGD38_02700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726950.1"
                     /translation="MRIVLLQSRPKFTDVQLSFRKLLAPIAWMMLLMTAVYAQDSHTD
                     NVVLVNGTTDSTVFGLGNSVRITGTVKQGAMALGGDVIVEGVVEGDVATIGGSVIQLP
                     GSSIGGDVIVLGGTYTADATAKRNATSKTIMYAGYQQELRDMMRNPTGLFSPDWSPTY
                     LGTRLLVVLFWIVVALAFTSVMPGTISRGVARLQLNSVRVAAIGLIGVVVLSVCVWLC
                     LWIMPEPVQVLVGLLALLLWLVASVFGRVILYAATGKWLQRKYVPFGKNSEAVALLLG
                     TSFWVLLTSLPYVWPFMAAFILIISFGLALTARYRKTVSV"
     gene            1114..2310
                     /locus_tag="VGD38_02705"
     CDS             1114..2310
                     /locus_tag="VGD38_02705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726951.1"
                     /translation="MKTFVLAMALALFTQGGDPGIAAKHAIGEVKTIDATAKQITIKT
                     DAGSTVAVSLSDKTTYKRLAPGETSLTNATDITFSDVSEGDRIMARGTVSEDKKSVPA
                     LQIIVMTKGDLAKKQEAERLEWRRRGILGVITALKPETKEITITHRTMGGSQAVVLPV
                     TDKTEMHRYAPDSIKFGDAKPSDFNELKVGDQLRAIGDRTDDPLRFNPQKIVTGSFRT
                     VGGVVTAVDPATGEIKINELEKKTPLTIVIKQDAVLRRFPPASEMAAMMGGFGRGPGG
                     PGGAPQGGQAPAAGGQGQPAQRPQGGGPGGPGGGGSGGRSFNINDMLERLPTISLADV
                     KVGDTIIVSSTQGVDPSRLTAISLVSGADTLLAMLAPRLQPGQATPNPAAGLGSSGIT
                     FGIGLP"
     gene            complement(2378..3235)
                     /locus_tag="VGD38_02710"
     CDS             complement(2378..3235)
                     /locus_tag="VGD38_02710"
                     /inference="COORDINATES: protein motif:HMM:NF015734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PASTA domain-containing protein"
                     /protein_id="HEY0726952.1"
                     /translation="MAKPNKIIVDEQTGQAFEALPEHWFDVLSAWISAAYSLMVIGYL
                     GYVVLDVWSEAYKLWPSWITKQIEDPGSANVFKLIVYTAVGGGMGAAVNNIRGFVSWH
                     AERRAFGWRFIWKYLSLPPLGATLAVLVYGILQGGMAVFNGGNVGGTGTAITSLSAWA
                     TGTLAGYGCHKVFIWLDDKVNTLFKVEGRTTTKVPDLVGKTSEEAEKALEEAKLKVGE
                     VTKEKTTNPAQIGKVITQRPEDGVEIACDSKVNFSIGEPSKEAAPPIDPTKPNGQEKP
                     ADEEVKMEQ"
     gene            complement(3327..5075)
                     /locus_tag="VGD38_02715"
     CDS             complement(3327..5075)
                     /locus_tag="VGD38_02715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726953.1"
                     /translation="MNRPFSSLLALCATLLLCFQPALGQQTSNTTERDAKTAALRAKA
                     YDLLASLADQIGTLQSAENRARIGSNIAGSIWTHDEKRARTLFKLVEDDIKFGLQVDK
                     KAPHSKHTFQVFYKLRENTAERMAQHDPELALAFVRDTASFVTEHARQPNGELSEAIV
                     RQEQALELRLAKQVSAANPEVAIKFARQSLATGFSRDLLPVLARASKDKARELYKEIV
                     AKLREARIGQWETLDFVQTLVRNYTPPAADEATFRELIQFLNNKALAIGCTKHTGEHY
                     DDVASVCQQLGVLFPIIERFYPGEARVLARWNSQRHDYAYEHTGYMELQETVENGTVE
                     EVLSLTSRYPNLEANIRMRAMWMAESNGDMEQAEKIARNYSGDPETRRMMEERITFYR
                     EISTHAEEQWAQSLKNVEKMPLQMQITLLTNLAHVMASRARKTSLKGLAYVSNLIEEM
                     PPGREQTVKQIELAAIYCLADSDRGFAIVEGLIPKLNELIAASVRLDSYDTRYLRDGE
                     WNMTAEGSVGNILTVLANNAGPFAWYDFDRAVTLAAQFERSEIRMMAQLKLAQGILAG
                     GPKRIPSPNGMIIRRQ"
     gene            complement(5154..5714)
                     /gene="frr"
                     /locus_tag="VGD38_02720"
     CDS             complement(5154..5714)
                     /gene="frr"
                     /locus_tag="VGD38_02720"
                     /inference="COORDINATES: protein motif:HMM:TIGR00496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEY0726954.1"
                     /translation="MSEKDVIKEAKVRMETVIDDFRRKVASVRTGRAVISILDTVMVD
                     YYGTPTPLNQMASVHAPEPQLLTVQPWDQTQITAVEKAIRAADLGLNPSNDGKLVRVP
                     IPALTEERRKQLARQVHELAEEHRTASRNIRRDANDRLKKMLKDKTISEDAERDSLQE
                     VQKLTDTYIGKIDELAKTKEHEILSV"
     gene            complement(5750..>6350)
                     /gene="pyrH"
                     /locus_tag="VGD38_02725"
     CDS             complement(5750..>6350)
                     /gene="pyrH"
                     /locus_tag="VGD38_02725"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: protein motif:HMM:TIGR02075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEY0726955.1"
                     /translation="AVYQLGVQVAVVVGGGNIFRGVSKSAGNMDRAAADYIGMLATVM
                     NGVVLQDALEKIEVDTRVLSAIDIPQLAEPFIRRRAVRHLEKGRVVIFAAGTGNPYFT
                     TDSAAALRALEIKADVIMKATKVDGVYSADPVLDTTAERYHEITYRQVLERELKVMDA
                     SAISLCMDNNLPIIVFNMREPGNIKRVVMGESGVGTKVG"
BASE COUNT         1212 a         1789 c         1902 g         1447 t
ORIGIN      
        1 gtgatcacca gggtgttggg ccacaagatc gttatcgaaa gtggttcgtt cggcgtgctg
       61 ctcgtggtcc tggcagccgc cattctcatc ctctcgcggt tgatttcaaa ctatcatcgc
      121 acgggcgcaa ccgaataaag ggggctccgt gcgaatcgtt cttctccagt cacggcccaa
      181 atttacagac gttcaactct ccttcagaaa actgctcgcg cccatcgcgt ggatgatgtt
      241 gttgatgacc gcggtctacg cgcaggattc acacaccgac aatgtggtcc tggttaatgg
      301 gaccacggac agcaccgtct ttggcttggg caactccgtc cgcatcaccg gcaccgtaaa
      361 acagggcgcg atggcgctcg gcggcgacgt gatcgtcgaa ggcgtggtcg aaggcgacgt
      421 cgcaacgatc ggcgggtcgg tgattcaact gcccgggtcg agcatcggcg gcgacgtgat
      481 cgttctcggc ggcacttaca cggcggacgc gacagccaag cgcaacgcca ccagcaagac
      541 aatcatgtac gcgggttacc aacaggaact ccgcgacatg atgcgcaatc cgaccgggtt
      601 gtttagtcct gactggagtc cgacgtacct cggaacacgg ctgctggtcg tgctcttctg
      661 gatcgtcgtc gcgctggcgt ttacgtcggt gatgcccgga acgatcagcc gcggcgtggc
      721 gcgcttgcag ttgaacagcg tgcgcgtagc cgcgatcggt ttgatcggcg tggtcgtgct
      781 ttcggtatgc gtgtggctct gtttgtggat catgcccgag ccggtgcagg tgcttgtcgg
      841 tttgctggcg ctgttgcttt ggctggtggc gagtgtattt ggtagggtta tcctgtacgc
      901 ggcgaccgga aaatggctgc aaagaaagta tgtgccgttc ggcaaaaact cggaagcagt
      961 ggccctgttg ttgggcacca gtttttgggt gttgctgacg tcactgcctt acgtttggcc
     1021 tttcatggca gctttcattt tgatcatcag tttcggtctc gccctgaccg ctcgttaccg
     1081 caaaaccgtt tctgtgtagg agaagattga gagatgaaga cgttcgtact ggcaatggcg
     1141 ctggcgttgt tcacgcaggg aggcgatccc ggaatcgccg cgaagcatgc gatcggcgaa
     1201 gtgaaaacga tcgacgctac cgcgaagcag atcacgatca agacagacgc cggttcgacc
     1261 gtggcggtct cgctcagcga taagacgacg tacaagcgcc tcgcgcccgg cgagacgtcg
     1321 ctcacaaatg caaccgacat cacgtttagc gacgtgagcg aaggcgatcg catcatggcc
     1381 cgtggaactg tctccgaaga caagaagtcg gtgcccgcgt tgcagatcat cgtgatgacc
     1441 aagggcgatc tggcgaagaa gcaggaagcc gaaagactcg aatggcggcg tcgcggaatc
     1501 ctcggcgtga tcacggcgct caaaccggaa acgaaagaga tcacgatcac ccatcgcacg
     1561 atgggcggtt cgcaggcggt cgtgcttccc gtgaccgaca agaccgagat gcaccgttac
     1621 gcgcccgact cgatcaagtt tggcgacgcg aagccgagcg atttcaacga gctcaaggtc
     1681 ggcgatcagt tgcgtgcgat cggcgatcga actgacgacc cgcttcgttt caatccgcag
     1741 aagatcgtga ccgggagttt ccgcacggtc ggtggtgttg tgacggcagt cgatcccgcc
     1801 accggcgaga tcaagatcaa cgaactcgag aagaagactc cgctgacgat cgtaatcaag
     1861 caggacgctg ttctgcggcg ctttccaccg gcttcagaaa tggccgcgat gatgggcgga
     1921 ttcgggcgcg gtccgggcgg tccgggtggc gctccgcagg gcggacaagc gcctgcggcg
     1981 ggcggtcaag gtcagccggc ccagaggccg caaggcggtg ggcccggtgg accgggcgga
     2041 ggcgggtcgg gtggccgtag cttcaatatc aacgacatgc tcgagcggct gccaacaatt
     2101 tctctggcag atgttaaggt cggggacact atcatcgttt ccagtacgca gggagtggat
     2161 ccctcgcgct taacagcgat ttcgctcgtg tccggcgccg acaccctgct cgcaatgctt
     2221 gccccgcgtc tgcaacccgg gcaggcgact cctaatcccg ccgcgggttt aggcagtagc
     2281 ggcatcacct tcggcatcgg cttgccgtag ccggttaagt tttgagttca gcctgcggtc
     2341 gcagcacaag ctaaagcttc ctcggtagcg cgattaccta ctgctccatc ttcacctctt
     2401 cgtcggctgg tttctcctgc ccgtttggct tcgtcggatc gatgggcggc gccgcttctt
     2461 tgctgggctc gccgatactg aaattcactt tgctgtcgca agcgatctcg actccgtctt
     2521 cgggccgttg cgtaatcact ttgccgatct gcgcgggatt ggttgttttc tctttcgtga
     2581 cttcaccgac tttcagcttc gcctcttcga gagctttttc cgcttcctca ctcgtctttc
     2641 caacgagatc gggaaccttg gtggtcgtcc tgccttcgac cttgaacagc gtgttgacct
     2701 tatcgtcgag ccagataaag actttgtgac agccgtatcc ggccaacgtt cccgtggccc
     2761 aggcggaaag ggaagtgata gcagtgccgg ttccaccgac gttaccgcca ttgaagacgg
     2821 ccatgccacc ttgcagaatg ccgtaaacaa gcacggcgag agttgcgcct aacggcggca
     2881 acgaaaggta cttccagata aaacgccagc caaaagcgcg gcgctcagcg tgccaactta
     2941 cgaagccgcg aatgttattc acggctgcgc ccatgccacc gccaacggcc gtgtagacga
     3001 tcaacttgaa cacgttggcg gaaccggggt cttcgatctg cttggtaatc caggacggcc
     3061 acagtttgta cgcctccgac cagacatcaa gcactacgta gcccaggtaa ccgatgacca
     3121 tgagcgaata tgcagcgctg atccacgctg acaatacgtc aaaccaatgc tccggtaatg
     3181 cctcgaatgc ctgccccgtt tgttcgtcga cgatgatttt gttgggtttg gccatagtct
     3241 cctcctcagt cgggtctcat cgagtaatga tgagagcaag gatttcgttt caggcagaag
     3301 gcccggaggt gactggctct gagatttcac tgtctgcgga tgatcatccc attgggactg
     3361 ggaatgcgct tcggacctcc agcgagaata ccctgggcca gcttcagttg ggccatcatg
     3421 cgtatttcgg agcgttcgaa ttgagctgct aaggttacgg cgcgatcgaa gtcataccac
     3481 gcgaaaggtc cggcgttgtt ggcaagcacg gtcaggatgt tgccgacaga gccctcggca
     3541 gtcatgttcc actcgccgtc gcgaaggtaa cgggtgtcgt agctgtcgag cctgacgctg
     3601 gccgcgatca gttcgttgag ctttgggatc aagccctcaa cgatggcgaa gccgcggtcg
     3661 ctgtcggcga gacagtaaat cgcagccagt tcgatctgtt ttacagtttg ctcgcggccg
     3721 ggcggcattt cctcgatgag gttactgaca tacgcgagcc ccttgagtga agttttcctg
     3781 gcgcgcgatg ccatcacgtg ggccaggttc gtcaataacg taatctgcat ctgcagtggc
     3841 atcttttcca cgttcttcag agattgcgcc cattgttctt cggcgtgcgt ggagatttcc
     3901 cggtagaacg tgatgcgctc ttccatcatt ctccgggtct cggggtcacc gctgtaattg
     3961 cgcgcaatct tctccgcttg ttccatgtcg ccattcgatt ccgccatcca catcgcgcgc
     4021 atgcggatgt tcgcttcgag gttcggatac ctcgacgtca gcgatagcac ctcttcgacc
     4081 gtgccgtttt cgacggtctc ctgcaactcc atgtatcccg tgtgctcata cgcgtagtcg
     4141 tgacgttgag aattccatcg ggccaggact cgagcttcgc caggatagaa ccgctcgata
     4201 atggggaata gcacgcccaa ctgttgacac accgaagcca cgtcgtcgta gtgctcgcct
     4261 gtatgtttag tgcagccgat ggcgagcgcc ttgttattaa ggaactggat gagttcgcga
     4321 aaggtcgctt cgtcggcagc aggcggcgtg tagtttcgga caagagtttg aacgaagtcg
     4381 agtgtctccc actgcccaat gcgggcctcg cggagcttcg ctacgatctc tttgtaaagc
     4441 tcccgcgcct tatctttgct cgctcgtgcg agcaccggca gtagatctct cgagaagcca
     4501 gtggccagcg actggcgcgc gaatttgatc gcgacttccg gattggcggc gctgacctgc
     4561 ttggcgaggc gcaattcgag cgcttgctcc tgtcgaacaa tggcctcgga gagctcgccg
     4621 ttaggttgcc gcgcgtgttc ggtgacgaag gaagcggtgt ctctaacaaa cgcgagggcc
     4681 agctccggat cgtgttgggc cattcgctcg gcggtgtttt cgcgcagctt gtagaagacc
     4741 tgaaacgtgt gtttcgagtg cggagctttt ttatcgactt gtagtccgaa cttgatgtcg
     4801 tcttcgacga gcttgaacag tgtgcgtgcg cgtttttcgt cgtgcgtcca aatcgaaccc
     4861 gcgatgttcg aaccgatgcg cgcgcgattc tccgccgact gcaacgtgcc gatctgatcg
     4921 gcaagcgacg cgagcaggtc gtaagccttc gcgcgcagtg cggcggtttt cgcgtctctt
     4981 tcagtggtgt ttgaggtttg ttggccgagt gcgggttgaa aacagagaag caacgtggcg
     5041 caaagggcca acaaagatga gaacggacgg ttcatagaac ctccaggagg aaaattctca
     5101 actgatagag ctcagcttct tagacgttcg taactgcgtt tcagttccga aacttaaaca
     5161 ctcaggatct cgtgctcttt ggtcttggcg agttcgtcga tcttgccgat gtaggtgtcg
     5221 gttagttttt ggacttcctg aagtgagtcg cgctcggcgt cttcggagat cgttttgtcc
     5281 ttcaacattt tcttcaggcg gtcgttggcg tcgcggcgga tgttgcgact ggccgtgcga
     5341 tgctcttccg ccaattcgtg gacttgcctg gcgagttgtt tgcgacgctc ttcggtgagt
     5401 gcaggaatcg ggacgcgcac gagcttgccg tcatttgatg gattgagacc gagatccgcg
     5461 gcgcgaatcg ctttctcaac agcggtgatc tgcgtctgat cccacggctg gacggtcagg
     5521 agctgcggct caggcgcgtg cacggacgcc atctggttga gcggcgtcgg cgtgccgtag
     5581 taatcaacca tcaccgtgtc gaggatactg atgacagcgc gacctgtgcg aacgctcgcc
     5641 accttgcggc gaaagtcgtc gatgactgtt tccattcgca cctttgcttc tttgattacg
     5701 tctttttcac tcatcgctca ctccgctgaa gggaattgac cgggtttaat tagccaacct
     5761 tcgtgcccac tccgctttcg cccatcacga cgcgtttgat gttacccggc tcgcgcatat
     5821 taaacacgat aatcggcaaa ttgttgtcca tgcacaggga aatagccgaa gcgtccatca
     5881 ctttgagctc gcgttcgagg acctggcgat aggtgatctc gtggtagcgt tcggcagtgg
     5941 tgtcgaggac gggatcggcg gagtagacgc cgtcgacctt cgtcgccttc atgatgacgt
     6001 cggctttgat ctccaacgcg cgcaacgcgg ccgcggaatc ggtcgtgaag tatggattac
     6061 cggtgcccgc ggcgaagatc accacgcggc ccttttccag gtgacgcacc gctcggcggc
     6121 gaatgaacgg ttctgcaagc tgcgggatgt cgatcgccga aagcacgcgg gtgtcgactt
     6181 cgatcttctc gagtgcgtcc tgcagcacga cgccgttcat cacggtcgcc agcatgccga
     6241 tgtagtctgc cgctgcacgg tccatgttgc cggcgctctt cgaaacaccg cgaaagatgt
     6301 ttccgccgcc gaccacgacc gcgacctgca cgccgagttg ataaacagcc
//
LOCUS       DASWTX010000173         1569 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_88552, whole genome shotgun sequence.
ACCESSION   DASWTX010000173 DASWTX010000000
VERSION     DASWTX010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88552"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1569
                     /locus_tag="VGD38_02730"
     CDS             <1..>1569
                     /locus_tag="VGD38_02730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726956.1"
                     /translation="AKTLIYTVSSRNEETNGVYTVATETDAAPTALLTGKGKYQKLTW
                     DEDNTQLAFISDKEDAAAKQPKFRVYHWNLKDSTANEIVAPSTSGFPKDMVISERANL
                     SFSLDGSHLFLGSAPPPEPERNPDEEIPADEKVLVDLWHWKDDYVQPIQKVRAEQDRN
                     RSYRAVYDVQSKKFVQLADETMENLSPSNDGRYAIGSDNRKYRVTNDYDPGFTDYYLV
                     NTEDGSRKPLATRQRGNYSLSPNAKYAIYFDGKDWNAYSIADGSTKNLTKDLKVNFFN
                     EDNDVPSIPGSYGIAGWTKDDNDVLIYDRYDIWQIAPDGSRAKNLTDGVGRKEKTTLR
                     YVRLDPKERSIDADKPMLLSAENQETRDSGFYRDKVNGDALPQKLLMAAKDFNTPAKA
                     KDADVLVLTASRFDQFPDVWVTNSSFRELKRVSNGDAQRANFHWGTAEMVSFKNTDGV
                     PLKGVLLKPDNFDPRKKYPMIVYIYERLSQGLHQFRNPSPGTSINPSFYVSNGYLVYM
                     PDIVYTIGYPGASAL"
BASE COUNT          407 a          507 c          395 g          260 t
ORIGIN      
        1 cgccaagaca ctcatctaca cagtttcatc acgtaacgaa gaaaccaacg gcgtctacac
       61 agtcgcgacc gaaaccgacg ccgccccaac tgccctactc accggcaaag gcaaatacca
      121 aaaactaacc tgggacgaag acaacacaca gctcgcgttc atcagcgaca aagaagacgc
      181 cgcagccaag cagccgaagt ttcgcgtcta tcactggaac ctcaaagact cgacggcgaa
      241 cgagatcgtc gccccgagca cgagcggttt tccgaaagac atggtgatca gcgagcgcgc
      301 caatctcagt ttctcgctcg acggcagtca cctcttcctc ggctcagcgc cgccacccga
      361 accggaacgc aatcccgacg aggaaatccc cgccgacgaa aaggtgctcg tggatctgtg
      421 gcactggaaa gacgactacg tccaaccgat tcaaaaggtc cgcgccgaac aggatcgcaa
      481 tcgctcgtat cgcgcggtct acgacgttca gtcgaaaaaa ttcgtgcagc ttgccgatga
      541 gacgatggaa aacctttcgc cgtcaaacga cggccgttac gccatcggct ccgacaaccg
      601 caagtatcgc gtcacgaacg actacgatcc cggtttcacc gactactacc tcgtcaacac
      661 cgaagacggc tcgcgcaaac ctttggccac gagacaacgc ggcaactatt cgctctcgcc
      721 aaacgcgaag tacgcgatct acttcgacgg caaagactgg aacgcctatt ccatcgccga
      781 tggctcgact aaaaacctga ccaaagatct caaggtcaac ttcttcaacg aagacaacga
      841 cgtgccgtca atccccggct cgtacggcat cgccggctgg accaaagacg ataacgacgt
      901 gctgatctac gatcgttatg acatctggca gatcgcgccc gacggcagcc gcgcgaagaa
      961 cctgaccgac ggcgtcggcc gcaaagaaaa aaccacgctg cgttacgtgc gtctcgatcc
     1021 gaaagaacgc tcgatcgacg cggacaagcc gatgctcctc agcgccgaga accaggagac
     1081 acgcgactcc ggcttctatc gcgacaaagt caacggcgac gcactcccgc aaaaactcct
     1141 gatggcggcc aaagacttca acacgcccgc gaaagcgaaa gacgcggacg tgctggtcct
     1201 gactgcttcg cgcttcgatc agttccccga tgtttgggtg acgaacagca gcttccgcga
     1261 actgaagcgc gtcagcaacg gcgacgcgca acgcgccaat ttccattggg gcactgcgga
     1321 gatggtgagt ttcaaaaaca ccgacggcgt gccgttgaaa ggcgtgttac tcaaaccgga
     1381 taacttcgat ccacgcaaga agtatccgat gatcgtctac atttacgagc gcctgtcgca
     1441 gggcctgcac cagttccgca atccgtcgcc gggcacgtcg atcaatccgt cgttctacgt
     1501 cagcaacggt tatctcgtct acatgcccga catcgtttac acgatcgggt atccgggcgc
     1561 gagcgcgct
//
LOCUS       DASWTX010000174         1972 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_67666, whole genome shotgun sequence.
ACCESSION   DASWTX010000174 DASWTX010000000
VERSION     DASWTX010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1972)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1972)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1972
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67666"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..302)
                     /locus_tag="VGD38_02735"
     CDS             complement(<1..302)
                     /locus_tag="VGD38_02735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726957.1"
                     /translation="MSSTEQKNIKLVYTLFCDDVRLEAGNKLSFMGVFQNIMVQQLPI
                     SLIKFAVVSHWQGKGSYLSEVRILTPDRQQPIVVSQPTRFEISSAGFADNISFFVNV"
     gene            complement(308..>1972)
                     /gene="ligA"
                     /locus_tag="VGD38_02740"
     CDS             complement(308..>1972)
                     /gene="ligA"
                     /locus_tag="VGD38_02740"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF005932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEY0726958.1"
                     /translation="DGLSLSLQYADGLLVRGVTRGDGRIGEDVTQNAKTIRTVPLRLK
                     SDVKVIDANIEVRGEVFIPRDVFEKTNAEREEAGEPRFANPRNAAAGAIRQLDSRLVA
                     RRKLDMFVYDLFVGGGRKPFPTHWKALEWLQAAGFRVNPHRKVCTTIDEVIDFANEKE
                     ALRDDLGYEIDGLVVKVNSTSLQDEFGTTSKAPRWAIAYKYPARQASTKVLDIVVQVG
                     RTGALTPVANLEPVFLAGTTVSRATLHNEDEIKRLGVKIGDWVMIEKSGEIIPKVLSV
                     VTTKRTGAERDFTPPDRCPVCNGLISRIEGEVVPRCVAADCRAQLMGRLLHFASRRAM
                     RIEGLGGALAEQLIEQKLVKDVGDLYSLTLDQVAGLERMAKKSATNLLEQIEASKNRD
                     LTNLIYALGIRHVGERTAGILAHEAGSLERLAEMSVEELDAIPEIGLTVAESVRDWFD
                     DEGNRALCDRLRAAGVKTESTRASSATLDERFAGKQFVLTGTLASFTRDDAKAQIEAR
                     GGRVNSSVSKKTDYVVAGEAAGSKLEKAQSLGVTVIDEDAFKEMLE"
BASE COUNT          386 a          622 c          523 g          441 t
ORIGIN      
        1 acgttgacga agaagctgat gttgtcggca aaaccggcgc tggagatctc gaagcgagtc
       61 ggttgtgaga cgacgatcgg ttgctgccga tcgggtgtga ggatgcgaac ctcggacagg
      121 taactgccct taccctgcca gtgactgacg acggcaaact tgatcagcga gatcgggagc
      181 tgttggacca tgatgttctg aaacacgccc atgaacgaca acttgtttcc ggcctcgagc
      241 cggacgtcgt cgcagaaaag cgtgtagacc aatttgatgt tcttctgttc tgtgctgctc
      301 atggtgttta ctccaacatc tctttaaatg cgtcttcgtc gataacggtc acgccgagcg
      361 actgcgcctt ttcgagtttt gagcccgcgg cttcgcccgc aacaacgtaa tccgttttct
      421 tactcactga agaattaacg cgcccgccgc gtgcttcgat ttgggctttc gcgtcgtcgc
      481 gcgtaaagct tgccaacgtt cccgtgagca caaactgctt gcccgcgaag cgctcgtcga
      541 gtgttgcgct gctcgcgcgc gtgctttcgg tttttacgcc tgctgctcgc agcctatcac
      601 aaagcgcgcg attcccttca tcgtcaaacc agtcgcgcac actttcggca acggttagtc
      661 cgatctccgg gatcgcgtcg agctcttcga ctgacatctc ggcgagacgt tcgagtgaac
      721 ccgcttcgtg ggccaggatg ccggcggttc gttcaccgac gtggcgaatg ccgagcgcgt
      781 agatgaggtt tgttaagtcg cggtttttgc ttgcttcgat ctgttcgagc agattggtgg
      841 ctgacttctt cgccatgcgc tcgagacccg cgacctggtc cagcgttagc gagtaaagat
      901 cgccgacgtc cttcacgagc ttctgctcga tgagttgttc cgccaaagcg ccacccaagc
      961 cttcgatccg catagcacgg cgcgacgcga agtgcagcag ccggcccatc aactgcgcgc
     1021 gacaatccgc agcgacgcat cgcggaacca cttcaccttc tattcttgat attagcccgt
     1081 tacaaacggg gcaccgatcc ggtggcgtaa aatccctctc cgctccggta cgcttggtcg
     1141 tgacgacgct caacaccttc ggaatgatct cgccgctctt ctcgatcatc acccagtcgc
     1201 cgatcttcac gcccaaacgc ttgatctcgt cttcgttgtg aagcgtcgca cgcgacacgg
     1261 tcgtgcccgc taagaaaacc ggctccagat tagctaccgg tgttagtgcg cccgtgcggc
     1321 cgacctgaac cacgatgtcc agcaccttcg tcgacgcctg ccgcgccgga tacttgtacg
     1381 cgatggccca gcgcggcgcc ttcgacgttg tgccaaactc atcctgcaac gaagtggaat
     1441 tgaccttcac cacaaggccg tcaatctcgt aaccgagatc gtcccgcagt gcttctttct
     1501 cgtttgcgaa gtcgatgact tcatcgatcg tcgtgcaaac cttgcgatgc ggattcacgc
     1561 gaaagcccgc agcctgtaac cactcaagcg ccttccagtg cgtcggaaac ggcttgcgtc
     1621 cgccaccgac aaacagatcg taaacaaaca tgtcgagctt gcggcgcgcc acgagtcgtg
     1681 aatcgagttg ccggatcgcg cccgccgccg cgttgcgcgg attggcaaac cgcggctcgc
     1741 ctgcttcctc gcgctcggcg ttcgtcttct caaacacatc acgtggaata aaaacctcgc
     1801 cacgcacttc aatgttcgcg tcaatcactt tcacgtcgct tttcagacgc agcggcacgg
     1861 tgcgaatcgt cttcgcgttc tgcgtgacgt cttcgccgat gcgtccatcg ccacgcgtaa
     1921 caccgcgcac cagcagacca tccgcatatt gcagcgacaa agaaagaccg tc
//
LOCUS       DASWTX010000175         1815 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_196830, whole genome shotgun sequence.
ACCESSION   DASWTX010000175 DASWTX010000000
VERSION     DASWTX010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1815)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1815)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1815
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196830"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..680)
                     /locus_tag="VGD38_02745"
     CDS             complement(<1..680)
                     /locus_tag="VGD38_02745"
                     /inference="COORDINATES: protein motif:HMM:NF013707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HEY0726959.1"
                     /translation="MSTVIEPPVTQAEKNLEELETVTIRFAGDSGDGMQLTGTQFTNT
                     SAVVGNDISTLPDFPAEIRAPAGSLPGVSGFQLNFSSQDIKTPGDQPNVLVAMNPAAL
                     KVNLPDLEDGGTLIINTDSFTPENLKYANYATNPLEDNSLAGYRIHKLPITTLNMNAL
                     KGNVELSRKEIDRSKNFFALGVLYWLYDRPMENTLNWIRAKFAKNPELAKANEIALKT
                     GYNFADTT"
     gene            complement(759..>1815)
                     /locus_tag="VGD38_02750"
     CDS             complement(759..>1815)
                     /locus_tag="VGD38_02750"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY0726960.1"
                     /translation="AHALGREMKRVAEVAREQVAGLLGAADASEIVFTSCGSESDNWA
                     IRGVLAMQPSKRHIVTTQVEHEAVRNLCRLLENDGYEVTWLGVSETGELDLDALRAAL
                     RPDTALVSTMLANNETGVLFPIEEVGRIVRENSEALFHVDGVQAVGKIPIDLKSMDVD
                     LFALSGHKLHAPQGVGALYVRNNISLAPFIIGGAQEQRRRGGTLAVPNIVGLGAACQL
                     AQQDDGHETIEKLRNQLEDGILEQIPSARVNGTRERSKRLPNTSNISFEYIEGQNILE
                     HLDRAGICVSTGSACHSTTHESSATLKAMNVPYTAAQGSIRFSLGRYNTEADVETTLR
                     VLPEIIEKLAAMSPYIR"
BASE COUNT          346 a          520 c          532 g          417 t
ORIGIN      
        1 tcagtcgtgt cggcgaagtt gtaacccgtc ttcaacgcga tctcgttcgc cttcgccagc
       61 tccggattct tcgcaaactt ggcgcgaatc cagttgagcg tgttttccat cggccggtcg
      121 tagagccaat aaaggacgcc gagcgcgaag aagttcttcg aacgatcgat ctccttgcgc
      181 gacagttcca cgttgccttt cagcgcgttc atgttgagcg tcgtgatcgg cagcttgtgg
      241 atgcgatacc cggcgagcga attgtcttcc aaaggattgg tcgcgtagtt cgcgtacttc
      301 aaattctccg gcgtgaagct gtcggtgttg atgatgagcg tgccgccatc ttcgaggtcc
      361 ggcaggttca ctttcaaagc cgcgggattc atcgccacca gcacgtttgg ctgatcgccc
      421 ggcgtcttga tgtcctgact cgaaaagttc aactgaaacc cgctgacgcc cggcaagctg
      481 cccgcagggg cgcgaatctc agccgggaag tcgggcagcg tggagatgtc gttgccgacg
      541 acggcggagg tgttagtgaa ttgagtgccg gtcaattgca taccgtcgcc ggagtcgccg
      601 gcgaaacgga tggtgacagt ttccagttct tccagatttt tctcagcctg cgtgacaggg
      661 ggttcaataa cagtgctcat gtagtatttg taaacccttt cggaatgtga tggccgcgct
      721 cggcagacat agtataggtc atcttcgacc tataagtcct atcggatata tggcgacatc
      781 gcggcgagct tctcgatgat ttccggaagc acgcgcaagg tcgtttcgac gtccgcttcg
      841 gtgttgtatc tgccgagcga aaagcggatc gaaccttgcg cggcagtgta gggcacgttc
      901 atggctttca gtgtggcgga tgattcgtgc gtggttgagt gacaggcgga accggtcgaa
      961 acacagatgc ccgcgcggtc gagatgctcg aggatgtttt gtccttcaat gtattcgaac
     1021 gagatgttcg acgtgtttgg caaacgtttc gaacgctcgc gggtgccgtt cacacgcgcg
     1081 ctcgggatct gttcgagaat cccgtcttcg agttgattgc gcagcttttc aattgtctcg
     1141 tgtccgtcgt cctgctgtgc gagctgacac gcagcgccga gtccgacgat gtttggaacg
     1201 gccaacgttc ccccgcggcg ccgttgctcc tgtgcgccac cgattataaa cggcgcgagc
     1261 gagatattgt ttcgcacgta aagcgcaccg acgccttgcg gcgcgtgcag cttgtgaccg
     1321 gacagcgcga agagatcgac gtccatgctc ttgaggtcga tcgggatctt gcctacagcc
     1381 tgaacaccgt caacgtgaaa caacgcttct gaattttcgc gtacgatgcg tccgacctct
     1441 tcgatcggaa acagcactcc ggtttcgttg ttcgccaaca tcgtcgaaac gagcgccgtg
     1501 tcgggacgca gtgccgcgcg caaagcgtcg agatcgagtt cgccggtttc gctgacaccg
     1561 agccacgtca cttcatatcc atcgttctcc agcaaccggc aaagattacg cacggcttcg
     1621 tgctcgacct gcgtggtcac gatgtggcgc ttcgaaggct gcatcgcgag cacgccgcga
     1681 atcgcccagt tgtctgactc cgaaccacac gacgtgaaca cgatctcact cgcatccgcc
     1741 gcgccgagca gaccggcgac ttgttcgcgc gcaacttccg caacgcgctt catctcgcgg
     1801 ccgagcgcgt gcgcc
//
LOCUS       DASWTX010000176         2104 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_306077, whole genome shotgun sequence.
ACCESSION   DASWTX010000176 DASWTX010000000
VERSION     DASWTX010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2104
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306077"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..800
                     /locus_tag="VGD38_02755"
     CDS             <1..800
                     /locus_tag="VGD38_02755"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY0726961.1"
                     /translation="ETKQIFYNSKDGTRVPMFLVHKKGLKLDGNNPTVLYGYGGFNVV
                     TAPNFSSLRLAMLEQGVVYASANMRGGGEYGEKWHEAGTKLKKQNVFDDFIAAAEWLI
                     ANKYTSSNKLAIQGGSNGGLLVGAVTNQRPELFRAVIESAGVMDMLRFQKFTIGSNWI
                     SDYGSSEASEAEFKALFAYSPIHNIKHGAKYPSVLITTADHDDRVVPAHNYKYAAALQ
                     AGQGGDNPILIRIDMNSAHGASNTTKAIEQQRDIMAFLFENLGVDYK"
     gene            complement(813..>2104)
                     /locus_tag="VGD38_02760"
     CDS             complement(813..>2104)
                     /locus_tag="VGD38_02760"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0726962.1"
                     /translation="RFYEDRWQVTLHSIMPMEAEKAARMYETDGAEALRNYLDEMQSR
                     RTVRFYFFDEHGEPLLNRAAPDVVEKLVRDKAHMDRANNQGLSAVIVRLGLAARRVPG
                     PSGRQYILAFQTSPSHLLPLSEAVGAHPYLRLLVITLIAAGLCAVLTLHITRPLGKLR
                     SAASDIADGQLKTRVQPEIGRRHDEIALLGRDVDRMAEQIERLVTAQRNLLGDVSHEL
                     RSPLARLIVALSLLKQGPTEEAAEYQNRISIEAERLDKLIGQLLTLTRIDSGVDENLR
                     ETFDLASLVQEVAADGDFEARAQHRAVRFVASESCPMSGIAEMIRSAVENVVRNAVRH
                     TAAGTTVEITMQRENNQTALLRVRDHGPGVPAQMLERIFLPFHRVVPVNGNGHDNGAG
                     LGLAIADRVVKLHNGTIQAYNAREGGLVIDIHLPLRH"
BASE COUNT          421 a          597 c          644 g          442 t
ORIGIN      
        1 acgaaaccaa gcagatcttc tacaacagca aagacggtac gcgcgtgccg atgttcctgg
       61 tccataagaa aggactgaaa ctcgacggca acaatccgac cgtgctttac ggctacggcg
      121 gtttcaacgt cgtgactgcg ccgaacttca gctcgctgcg tctggcgatg ctcgaacagg
      181 gcgtcgttta cgcttccgcg aacatgcgtg gcggcggtga gtacggcgag aagtggcacg
      241 aggccggcac gaagttgaag aagcagaacg tgtttgacga tttcatcgcg gcggctgagt
      301 ggctgattgc gaacaagtac acgtcgtcga acaagcttgc gattcagggt ggatcgaatg
      361 gcggcttgct ggtgggcgcg gttacgaatc aacgtcccga gctgtttcgt gcggtgattg
      421 agtcggcggg cgtgatggac atgttgcgat tccagaagtt tacgatcggt tcaaactgga
      481 tttcggatta tggttcgagt gaggccagcg aagcggagtt caaagctttg ttcgcgtact
      541 cgccgattca caacatcaag cacggagcga agtatccgtc ggtgctgatc acgaccgcgg
      601 atcacgacga ccgcgtggtg cctgcgcaca attacaagta cgcggcggcg ttgcaggccg
      661 ggcagggcgg tgacaatccg atcctgatcc ggatcgatat gaactcagcg cacggcgcga
      721 gcaacacgac gaaggcgatc gagcagcagc gcgacatcat ggcgtttctg tttgagaacc
      781 tcggcgtgga ttataagtaa ctcctaaata aatcagtggc gcaacggaag gtggatgtcg
      841 attacgagtc caccttctcg tgcgttatag gcttgaatcg ttccgttgtg cagcttcacg
      901 acgcggtcgg cgatcgcgag gccgaggccg gcgccgttgt catgcccgtt tccattcacg
      961 ggcacgacgc ggtgaaacgg caggaagatc cgttcgagca tttgagcggg cacgcccggg
     1021 ccgtgatcgc gtacgcgtaa caaagcggtt tggttgttct cgcgttgcat cgtgatctcg
     1081 acggtcgttc ccgctgccgt gtggcgcacg gcgttgcgca cgacgttctc aaccgcgctg
     1141 cgaatcattt ccgcgatacc cgacatcgga caactctcac tcgccacgaa acgcaccgct
     1201 cgatgctgcg cgcgcgcttc gaaatcacca tccgcggcga cttcctgaac caggctcgca
     1261 agatcaaacg tctcgcgcag gttttcgtca acaccgctat cgattcgcgt caacgttaat
     1321 aactgaccga tcagcttatc gagccgttcg gcttcgatgc tgatgcggtt ctgatactcg
     1381 gcggcctcct cagtcggtcc ttgtttcaaa agactcaacg cgacgatcaa gcgcgcgagc
     1441 ggcgagcgga gttcgtgtga aacgtcgccg agcaggtttc gttgcgccgt caccaatcgc
     1501 tcgatctgtt cggccatgcg atcgacatct cgaccgagta acgcgatctc gtcgtgacgg
     1561 cggccgatct ccggttgcac gcgtgtttta agttgtccat cggcgatgtc gctcgcggca
     1621 ctgcgcaatt tgccgagtgg gcgcgtgatg tgcagcgtca acactgcgca aagccccgcg
     1681 gcgatcaatg tgatcacgag caatcgcaga taaggatgcg cgccgacggc ttccgagagc
     1741 ggcaggagat ggctcggcga tgtttgaaac gcgaggatgt actgccggcc acttggacca
     1801 ggaacccgcc tcgctgctaa tccgagacgc acgatgacgg cggacaaacc ctggttgttc
     1861 gcgcggtcca tgtgcgcctt gtcgcgcacc agcttttcca cgacatcggg cgcggcgcga
     1921 ttcagcaggg gctcgccgtg ttcgtcgaag aagtagaacc tgacggtcct gcggctctgc
     1981 atctcgtcga gatagttgcg caacgcctct gcgccgtcgg tttcgtacat gcgcgcggct
     2041 ttctctgctt ccatcggcat gatgctgtgc agtgtcactt gccagcggtc ttcgtagaac
     2101 cgcg
//
LOCUS       DASWTX010000177         2215 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_349614, whole genome shotgun sequence.
ACCESSION   DASWTX010000177 DASWTX010000000
VERSION     DASWTX010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2215
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349614"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(194..1933)
                     /locus_tag="VGD38_02765"
     CDS             complement(194..1933)
                     /locus_tag="VGD38_02765"
                     /inference="COORDINATES: protein motif:HMM:TIGR00225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY0726963.1"
                     /translation="MEVAQQFKGYRKRPIGWKFWITASSVILLAAIIGGTFGSGRRFS
                     GFTSTAQKSYRVTGAIERDYNEAVDTITANYSGDIDHEKATQAAIQGMLSTLDPHSAY
                     FPYSEFKKLKEDQDSRFYGIGVTIVQHRDGVYVQSAVEGTPAAKLGLRYGDRILEVDG
                     KDAREWSSEQVSKNVRGALGEPVTLKVERAGSEAPQYFTIVRDAVPLLTIRNAYMIRP
                     GTGYIGLTGGFQRSSDEELSKAMKRLEEQGMRQLVLDLRGNPGGLLDQAIEVSSEFLP
                     RGTKIVSVKGRTEYAQPFEYKSTGSDPSTLPLVILINRNTASASEIVAGAIQDHGRGL
                     IVGETSFGKGLVQRIFQLPFNTGLTLTTARYYTPYGRSLQRDYSNGSLYDYYTRHEPA
                     DTPPPPGPRNIDSPLTLASPTPHPHNGPGVQTAVGRVFYGGGGITPDIEIKEPATTPL
                     RLRIAEAAFHFTRHLAAGVVPGLETYKVEKVQYGKNARPNDFAITDRVLEAFRNFVRT
                     HPENQLQPAQIDEELEFAKLRLRQEIITAAFSNDAGARVLLESDAQVLRALEALPDAK
                     RLADSAGNSVWQG"
     gene            1989..>2215
                     /locus_tag="VGD38_02770"
     CDS             1989..>2215
                     /locus_tag="VGD38_02770"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0726964.1"
                     /translation="MPASLSIVIPAYNEAVRLGNTLLAVVDYLRESWPDAEVIVVDDG
                     SDDDTAGIARSIFSDSGSLRTSVISYKSNLG"
BASE COUNT          447 a          681 c          630 g          457 t
ORIGIN      
        1 caatctcgcg cgagagcacc gcgggctctt cggccttcgg ggcggacatc gacggtttga
       61 gtgccggctc ttgggcgctc gcaacaaacg tcgcgaatag aagtagcgca atgagtgtga
      121 gtagccgctt catgtaaggc cttttgggga acgcctatgg cgttcagata aaaagccaat
      181 ctgtaaaacc aaatcagccc tgccagacgc tgttgccggc gctgtcggct aatcgttttg
      241 cgtccggaag cgcttcgagg gcgcgcagga cttgtgcgtc gctctcgagt aagacacggg
      301 cgccggcgtc gttggaaaat gcagcggtaa tgatctcctg gcggagtctc aacttcgcaa
      361 actccaactc ttcatcgatc tgcgcgggct gaagctggtt ctcgggatgc gtgcgaacga
      421 aattacgaaa cgcttccaac acccgatccg tgatcgcaaa atcattcggc cgcgcgttct
      481 tcccgtactg caccttctcg accttgtacg tttccaaccc cggcacaacg cccgccgcca
      541 ggtgtctcgt gaaatgaaac gctgcttcgg caatgcgcaa acgcagcggc gtggtcgctg
      601 gttcctttat ttcaatgtcc ggcgtgatgc cgccgccgcc gtagaacaca cggccgaccg
      661 cggtttgcac gcctggtcca ttgtgcggat gcggcgtcgg cgatgccaac gtaagcggtg
      721 aatcgatatt gcgcggtccc ggcggcggcg gtgtgtccgc cggctcgtga cgcgtgtagt
      781 agtcgtaaag cgaaccgttc gaatagtcgc gctgcaacga gcgcccatac ggcgtgtagt
      841 agcgcgcggt cgtcagcgtc aacccggtat tgaacggcaa ctgaaagatg cgctgcacga
      901 gccctttgcc aaaactcgtc tcgcccacaa tcaaaccacg cccgtggtcc tgtatcgcgc
      961 cggcaacgat ctctgacgcc gacgccgtgt tgcggttgat caaaatcacg agcggcaacg
     1021 ttgaaggatc ggaacccgta gacttgtact caaacggctg cgcgtactcg gtgcgtccct
     1081 ttaccgaaac gatcttcgtg ccgcgcggca gaaactcact cgaaacctca atcgcctgat
     1141 cgagcagacc accgggattg ccgcgcaagt cgagcacgag ctggcgcatg ccctgctctt
     1201 cgagccgctt catcgccttc gaaagctctt catcactcga acgctgaaaa ccgccggtga
     1261 gcccgatata acccgtgccg ggccgaatca tgtacgcgtt acgaatcgtc aacaacggca
     1321 ccgcgtcgcg aacgatcgtg aagtactgcg gcgcctcaga gcccgcgcgc tcgactttca
     1381 aagtcaccgg ttcgcccaac gcaccgcgca cgttcttcga aacttgttcg ctggaccact
     1441 cgcgcgcgtc cttgccgtca acttcgagaa tgcgatcgcc gtagcgcaaa cccagcttcg
     1501 ccgcgggcgt gccttcgacc gctgactgca cgtaaacgcc gtcgcgatgt tgcacgatcg
     1561 tgacgccgat tccatagaag cgagaatcct gatcttcttt cagcttcttg aactcgctgt
     1621 aagggaagta cgcggagtgc gggtcaagcg tggaaagcat gccctggatc gcggcctgag
     1681 ttgctttctc gtgatcgatg tcgcccgagt agttggcagt gatcgtatcg actgcttcgt
     1741 tgtagtcgcg ttcgattgcg ccggtgacgc gatacgattt ttgggcggtg gaagtgaaac
     1801 cgctgaaccg gcggccactg ccaaacgtgc cgccgatgat tgccgccagc aggatcaccg
     1861 acgacgccgt gatccaaaac ttccagccaa tcggccgctt ccgataaccc ttgaattgct
     1921 gtgctacttc cacgctcgaa aatataacac gggcattggc cgtgttatag tgcgaacgag
     1981 caccctgaat gcctgcgtct ctctcgatcg ttattcccgc ttataacgag gcggtccgct
     2041 tggggaatac cctgctggcg gtcgtcgatt acttgcgcga aagctggccc gacgcggaag
     2101 tgatcgtcgt ggacgacggc tccgacgacg acacggctgg gatcgcccgc tcgatcttct
     2161 ccgacagcgg ctccctgcgc acttcggtca tcagttacaa atcaaacctc ggcaa
//
LOCUS       DASWTX010000178         1723 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_349622, whole genome shotgun sequence.
ACCESSION   DASWTX010000178 DASWTX010000000
VERSION     DASWTX010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1723
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349622"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(360..1106)
                     /locus_tag="VGD38_02775"
     CDS             complement(360..1106)
                     /locus_tag="VGD38_02775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726965.1"
                     /translation="MKPPFQPIPRSLLLLLVLTWSSAVFAQQANTSHAYGFVSPNTSE
                     NLKLDQAIKGMSSREETELRNKALNLSCVVRTRIQAFRALGSWKDGAEHSVMVRFKSD
                     EATLRYVLSHMGRDAQQKYVIYFHPQPDGEADLYTLRPRAGARNLFALTTALERAGIP
                     FHTIVPLKQTTTVYIIDLDRTLREKIMNAAQALRAHVTTEPGKAQLFGDDERQRAKTV
                     FEEDIKNYETQNPNLPPACDAQKRRKRVSS"
     gene            1170..>1723
                     /locus_tag="VGD38_02780"
     CDS             1170..>1723
                     /locus_tag="VGD38_02780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726966.1"
                     /translation="MQRRSLTELASNPDLISGIYNYCDRWCERCPLTSRCLVYATEQM
                     DHNGITESHDLRNEAFWHKLNSILHETQQLISGWAAEAGLDLNYIPEEEPKRRKPRRQ
                     LVDNHPLTRAGKKYANNASDWFRSFDHTEQSEPSEQLEDAREVIQWYQYQIAVKIIRA
                     LSCRSDGWEDEPEMSDFPKDSDGSA"
BASE COUNT          353 a          514 c          498 g          358 t
ORIGIN      
        1 tccgccgctt gcgccgtcaa cgcctcggct ccgccgccgc cgtcaacgcc tcggctccgc
       61 cgcttgcgcc gtcaacgcct cggctccgcc gcttgcgccg tcaacgccac ggctccgccg
      121 ccggatgtga ggcgaggcta cgcctcgccg ttagcgagcg aactaaacaa tgggctaggc
      181 ccttggttcg ggctcagccc tttgggccat aggccgtacc aggggcctag cccaacagct
      241 gccttttata cttccggcgg ggcagagccc cgcctcacat ccggcggcgg agccgaggcg
      301 ttgccggtgc aagctgcagc ggggccgatg tgttgaccaa aagagcaagc cgcttcgtcc
      361 tagctcgaaa ccctcttcct tctcttctgc gcgtcgcacg ccggtgggag gttggggttt
      421 tgggtttcgt agtttttgat gtcctcctcg aagacggttt tggcgcgttg acgctcgtcg
      481 tcgccgaaga gttgggcttt gccgggttcg gtcgtgacgt gcgcgcgcag cgcttgcgcc
      541 gcgttcatga tcttttcacg caacgtgcga tcgagatcga tgatgtagac cgtcgtcgtt
      601 tgcttcaacg gcacgattgt gtgaaacgga attcccgctc gttcgagcgc ggttgtcaaa
      661 gcaaaaagat tgcgagcacc ggcgcgtgga cgcagcgtgt agagatcggc ttcgccatcc
      721 ggctgcgggt gaaaatagat gacgtacttc tgctgcgcgt cgcggcccat gtgcgacaac
      781 acgtatcgca gtgtggcctc gtcgctcttg aagcgcacca tcaccgagtg ctcggcgccg
      841 tccttccacg aacccagcgc gcgaaacgcc tgaatcctcg tgcgcaccac acaactcaga
      901 ttgagcgcct tgttgcgcag ctccgtttcc tcgcgcgagc tcattccttt gatcgcctgg
      961 tccagcttga gattttcact cgtgttcgga ctgacgaagc cgtaagcatg tgaagtatta
     1021 gcttgttgcg cgaagaccgc gctggaccac gttagtacaa gcagcaacaa cagcgagcgg
     1081 gggattggtt gaaatggggg tttcatattc gcgtgagtct acagtacaat gcgccaacct
     1141 taaatcctca tcttcaagga gacaactcaa tgcaacgaag atccctcacc gaactagcca
     1201 gtaatcctga cttgatctcg ggaatttaca actactgcga tcgttggtgt gaacgctgtc
     1261 cgctaacgtc gcgctgcctg gtctatgcaa ccgagcagat ggaccataac ggtataactg
     1321 aaagccacga cctgcgcaac gaagcgttct ggcacaagct caactcgatc ctgcatgaga
     1381 ctcagcagtt gatttccggg tgggccgcgg aggcaggtct cgacctgaat tatatcccag
     1441 aagaagaacc aaagagacga aaacccaggc gccagctcgt cgacaatcat ccgctcacgc
     1501 gcgcgggaaa gaaatacgca aacaacgcga gcgattggtt ccgcagcttc gatcacaccg
     1561 agcaaagcga gccgtcggag cagctcgaag atgcgcgcga agtgattcag tggtatcagt
     1621 atcaaatcgc cgtgaagatc atacgggcgc tttcctgccg cagtgacggc tgggaagacg
     1681 agccggaaat gtccgatttt cctaaggatt ccgacggttc ggc
//
LOCUS       DASWTX010000179         5000 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_67736, whole genome shotgun sequence.
ACCESSION   DASWTX010000179 DASWTX010000000
VERSION     DASWTX010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5000
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67736"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..259)
                     /locus_tag="VGD38_02785"
     CDS             complement(<1..259)
                     /locus_tag="VGD38_02785"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY0726967.1"
                     /translation="MAKAKETLIQQPQKSQSIADPAPAAASVIDLSKHFGKTSVLENI
                     SFDVAEGEVLVLLGASGSGKTTILRIIAGLEMPLKGRVILHG"
     gene            complement(263..1078)
                     /locus_tag="VGD38_02790"
     CDS             complement(263..1078)
                     /locus_tag="VGD38_02790"
                     /inference="COORDINATES: protein motif:HMM:TIGR00969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY0726968.1"
                     /translation="MRHVRGFDVVRPLSIGMLIFMMLPLVFLPLASIFIFGTSNGLDK
                     FWAALMAPEAIFALKLSLATSFWATVFNVIFGLFAAYVLSRYNFWGRNALIVTISLPT
                     AIPTAVAGFALLLLWGPYGTLGRLLEPHGIQLMFTASAIILANIFVTFPLAFGVIKPV
                     FDTMSRSLEEASATIGATRWQTFWYVTLPSLRGAIVSGALLTFARAVGEFGSTILVSG
                     NLAGKSQTAPLYLFAKFNEGQIEAANAIAIVLALFSFLIFSVLFFARDWLDVD"
     gene            complement(1120..2154)
                     /locus_tag="VGD38_02795"
     CDS             complement(1120..2154)
                     /locus_tag="VGD38_02795"
                     /inference="COORDINATES: protein motif:HMM:TIGR00971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_function: GO:0043199 - sulfate binding [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEY0726969.1"
                     /translation="MRKTTFQSVPFVTVLCVTLALLVASCLPKPIAEGGDITITLYGF
                     SIMKESLEAAIFPGFTHKWKQQHGQEVRFESSFAGSETITNQILRGTPADIAILSIER
                     DADRLKQGGFVTSDWHTYPAKGIINKTPFIIVVRKGNPKNIRDFSDLAMPGVRLIHPD
                     PVSSGGAQWSILAIYGSELKKYESPSGERDTMRALRTLQAIWKNVISTPGSAREARTT
                     FELGNGDALITYELDALLMKQANAAIEIVVPKATIFSEHPAVVIDKNVSGTKRQVVDA
                     FMQYLWSDEAQQAFVKYHFYSVTNEAFNKANPEFAHIELPFTIEYFGGWDNAYVNVIE
                     KVFRDQVQRK"
     gene            2372..4753
                     /locus_tag="VGD38_02800"
     CDS             2372..4753
                     /locus_tag="VGD38_02800"
                     /inference="COORDINATES: protein motif:HMM:TIGR02669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIID/LytB domain-containing protein"
                     /protein_id="HEY0726970.1"
                     /translation="MRSSLARKLITVLLAQALFLSPILAQQQTPPETRPRRAEPAWPQ
                     PAATTPVISSPNLAVVTGPEPKIRVALTTDTRSAVISTTGHLMNASGGGSTMLALDTS
                     RVRVDARLLSPLPASNDDAAFKVIVAGAASRDEAEEIENQIEKLTNEDGHSALDAETK
                     TWGVLVGSTWPREEAEELRARLEAAGFDARVQGPPANTGSVADSSQSTPSGNVRLTAR
                     PSLPSREVVASGNAGTMFRSSAPVVFASDNEKDAPVRFNDRPYRGRIEVFTNLRGTLT
                     VVNELGLEDYTRGVVANELSPGGYPALEAQKAQAIAARTYALKNRGQFMAQGFDILPT
                     TRSQVYRGLTSENPLSTRAVDETRGIIATYAGEPINALYTSTCGGRTEDSENIFNHAV
                     PYLRGRECAAAGHAAFERFVIRTTRTPADLHNDEHVAVVRDISLLLTQNFGTLHERVS
                     DSWLAGEASVSEVRNWIANVARVAKQTTPLTGDDVNRPPGFATALVAAVFGGDGPATL
                     LNSADADYLLAVGDAQDVPSSNRADLAMLLRDGYLSAYPDATLRPRMPLSRARVLHAI
                     ARILEARDLLKLQKGNARPASDGQLILRSAKGKDQPIRINPDAFLFRQLGERPYAVSS
                     VTLVGGEAVTYHLAANGQIDFLEVKPATNGAAADRFSPFSNWTSNLSLAQVQARLARA
                     ARGIGQILDLRVVSRGSSRRVTDLEIVGSNGTAHVRGGRIRSVLGLREQLFVIDREYD
                     DSGRITSFVFSGRGWGHGVGMCQVGAYGLAKQGWSYEQILKDYYTGIELTRLY"
     gene            4816..>5000
                     /locus_tag="VGD38_02805"
     CDS             4816..>5000
                     /locus_tag="VGD38_02805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726971.1"
                     /translation="MASNIKHLMTVADLDAFPDDDGKRYELIEGELFVSCAPGLPHQL
                     VLHNLQLELGIYLRQNP"
BASE COUNT         1004 a         1409 c         1526 g         1061 t
ORIGIN      
        1 tgccgtgcag gatcactctt cccttcaacg gcatctccaa acccgcgatg atgcgcaaga
       61 tcgtcgtctt gccgctgcct gacgcgccga gcaacacgag cacttcgcct tcagccacat
      121 cgaaactgat gttctccagc acactcgtct tgccgaagtg tttgctgaga tcgatcacac
      181 tggcggcagc cggcgccggg tccgcgatcg attgcgactt ttggggttgc tggatcaatg
      241 tttcctttgc tttcgccata gcttaatcca cgtcgagcca gtcgcgcgcg aagaacagca
      301 cactgaagat cagaaacgag aacaacgcga gcacgatcgc gatcgcgttc gcggcttcga
      361 tctgtccttc gttgaatttg gcaaagaggt aaaggggcgc cgtttgcgat ttgccagcca
      421 ggtttcccga gacgagaatc gtcgaaccga attcaccgac cgcgcgcgca aacgtcagca
      481 acgccccgga aacgatcgcg ccgcgcagcg aaggcagtgt gacgtaccag aacgtctgcc
      541 agcgcgtggc gccgatggtc gcggatgctt cttcgagcga gcggctcatc gtgtcgaaga
      601 cgggtttgat cacgccgaac gcgagcggaa acgtgacgaa gatgttcgcc aggatgatgg
      661 cactggcggt gaacatcagt tgtatgccat gcggctcgag caagcgtccg agcgtgccgt
      721 atggtcccca aagtagcagc aacgcgaaac cggcgacggc ggttggaatc gcggtcggca
      781 gcgagatcgt gacgatgagg gcgttgcggc cccagaagtt gtaacgcgag agaacgtaag
      841 cggcgaacag accgaagatg acgttgaaaa cggtggccca gaagctcgtg gcgagcgaga
      901 gcttgagtgc gaagatcgct tcgggcgcca tgagcgcggc ccagaatttg tcgaggccgt
      961 tgctggtgcc gaagatgaag atcgacgcga gcggcagaaa caccagcggc aacatcatga
     1021 agatgagcat gccgatgctg agcggccgca cgacgtcgaa gccgcgtacg tgtctcattg
     1081 ttggtgctgc tgtgctcata tcctgttttt atccgtgctt tactttcgtt gcacctgatc
     1141 gcgaaaaacc ttctcgatca cgttgacgta tgcgttgtcc cagccgccga agtattcgat
     1201 cgtgaacggc aactcgatat gtgcaaactc cgggttcgcc ttgttgaagg cctcgtttgt
     1261 aactgagtag aagtgatact tcacaaacgc ctgctgcgct tcgtcactcc agagatactg
     1321 catgaacgcg tcgacaacct ggcgcttggt tccactcacg tttttgtcga tcacgaccgc
     1381 cggatgctcg ctgaagatcg tcgctttcgg cacgacgatc tcgattgcgg cgttggcttg
     1441 tttcatcaac agcgcgtcga gttcgtaagt gatgagcgcg tcgccgttgc cgagttcaaa
     1501 cgtggtgcgt gcctctcgcg ctgagccggg agtcgagatc acgtttttcc agatcgcttg
     1561 cagcgttcgc agcgcgcgca tggtgtctcg ttcgcctgac gggctttcgt atttcttgag
     1621 ctctgaaccg tagatggcga gtatggacca ttgcgcaccg cccgaactga cgggatccgg
     1681 gtgaatcaaa cgcacgccgg gcattgcgag atccgagaag tcgcggatgt ttttgggatt
     1741 gcccttgcgg acgacgatga tgaacggcgt cttgttgatg atgcccttcg ccggatacgt
     1801 atgccagtcg gaagtgacga agccgccttg tttgagacga tcggcatcgc gttcgatcga
     1861 gaggattgcg atgtcggcgg gcgtgccgcg caggatctgg ttagttatcg tttccgagcc
     1921 ggcgaaagaa gactcgaacc gcacttcctg accgtgttgt tgtttccact tgtgtgtgaa
     1981 acccgggaag atagcggcct cgagcgactc cttcatgatc gaaaagccgt agagggtgat
     2041 ggtgatgtcg ccgccttcgg cgattggttt gggcagacaa ctcgccacca gcaatgcgag
     2101 cgtgacgcaa agtacggtca cgaacggaac gctttggaat gtagtcttcc tcatgggggc
     2161 tcggacgcct cctaattctc tggacagacc caaaagctgc tgccgtcatg gcttggtaac
     2221 cgggggtgtg ctccgtctat accatatcgg cggggttcgt gtgaattgtt tttccgtctg
     2281 caaattctga gactcatgtc cgcgctttgt agtaccatgc ggccagcggt agcccctccc
     2341 tgataaccaa cgccgctaaa ggaatatcga aatgcgcagt tccctcgccc ggaaactgat
     2401 tacagtgctg ctcgcgcagg cgctcttcct ttcgccgatc ctcgcgcaac aacaaacgcc
     2461 gccggaaact cgtccgcgca gggctgaacc ggcctggccg caaccggcag cgactacgcc
     2521 cgtcatctcg tcgccaaatc tcgccgtcgt taccggcccg gagccgaaga tccgtgttgc
     2581 actgacaact gacacgcggt ctgctgtgat ttcgactacg ggtcacttga tgaacgcgag
     2641 tggcggcggt tcgacgatgc tcgcgctaga tacatcgcgc gttcgtgttg atgcacggct
     2701 gttgtcgccg ctgccggcga gcaacgacga tgctgcgttt aaagtgatcg tggcgggcgc
     2761 agcttcacga gacgaagctg aagagatcga aaatcagatt gaaaaactga cgaatgagga
     2821 tgggcactct gcgttagacg cggagacgaa aacgtggggc gttcttgtgg gctcaacgtg
     2881 gccgcgtgaa gaagcggagg agttgcgcgc gcggctcgaa gcagcggggt tcgacgcgcg
     2941 agtacaaggg ccaccggcga acacgggatc agttgcggac tcatcgcagt ctacgccaag
     3001 cggaaatgtg cggttgacgg ctcgtccgag tttgccgtct cgcgaggttg tcgcttcggg
     3061 caacgctggt acgatgttcc gttcgagcgc accggtcgtg tttgcctctg acaacgagaa
     3121 agacgcgccc gtgcgcttta acgatcggcc ctatcgcggc cgtatcgaag tgttcacgaa
     3181 cctgcgcggc acgctgacag tcgtaaacga actcggtctc gaggattaca ctcgcggcgt
     3241 cgttgcaaac gagctctcac cgggcggtta tcccgcgctt gaagcgcaaa aagcacaagc
     3301 catcgccgca cgcacttacg ctttgaagaa tcgcggccag ttcatggccc agggtttcga
     3361 catcctgccc acgacacgtt cgcaggtcta tcgcggtctg acttccgaaa acccgctttc
     3421 gacgcgtgcg gtggacgaaa cgcgcggcat catcgcgacg tatgcaggcg aaccgatcaa
     3481 cgcgctctac acgtcgactt gcggcggccg cactgaagac tcagaaaaca ttttcaacca
     3541 tgccgtgccg tacttgcgtg gacgcgaatg cgccgctgcg ggacatgcgg cgtttgagcg
     3601 attcgtgatt cgcacgacgc gcacgccggc tgacctgcat aacgacgaac acgtggcggt
     3661 ggtgcgcgac attagtctgt tgctgacaca gaatttcggc acgttgcatg agcgtgtttc
     3721 agattcatgg ctcgcgggcg aagcatcggt ttccgaagtg cgcaactgga tcgcgaacgt
     3781 tgcgcgcgtc gcgaagcaaa cgacgccgtt gaccggcgat gatgtgaatc gtccgccggg
     3841 ttttgccacc gctctggtcg ctgcggtgtt tggtggagat gggcccgcga cgctgctcaa
     3901 cagcgccgat gctgattacc tgctcgccgt aggcgacgcg caggacgtgc cgtcctcgaa
     3961 tcgcgcagac ctcgcgatgt tgctgcgcga cggttacctg tccgcttacc ctgatgcgac
     4021 gctgagaccg cgcatgcctt tgtcgcgcgc gcgtgtgttg cacgcgatcg cgcgcattct
     4081 cgaggctcgc gaccttttga aactgcaaaa aggaaacgcg cggcccgcga gcgatgggca
     4141 gttgatactt cgttcggcga aaggaaaaga tcagccgatc aggatcaatc cggacgcgtt
     4201 tctgtttcga cagcttggcg aacgtcctta cgcggtgtcg tcggtaacgc tggtcggcgg
     4261 tgaagcggtg acgtatcacc tcgccgcaaa cgggcagatc gactttctcg aagtgaagcc
     4321 ggcgacgaac ggcgcggctg cggatcggtt ctcgccgttt tcgaattgga ccagcaatct
     4381 atcgctggcc caggtgcagg ctcgtctggc gcgcgcggcg cgtggtatcg gacagattct
     4441 cgacctgcgt gtcgtatcgc gtggttcgtc gcgccgggtt acggatctgg aaattgtcgg
     4501 cagcaacggc acggcccacg tgcgcggcgg tcgcattcgt tcggtcctcg gcctgcgcga
     4561 gcagctcttc gtgatcgatc gcgagtacga cgacagcggg cgcatcactt cgtttgtctt
     4621 tagcgggcgc gggtggggac acggcgtcgg catgtgccag gtcggcgcgt acgggttagc
     4681 gaaacagggt tggtcctacg aacagatttt gaaggattat tacacaggta tagaactaac
     4741 gcggctgtat tgacatcgac ttttcgtgat gtatattagc ctctgcctcc aatgagttag
     4801 ctttagagta atcgtatggc ttccaatatc aaacacctca tgaccgtcgc ggacctcgac
     4861 gcctttcccg acgacgatgg caagcgctat gaactcatcg aaggagagct tttcgtgtct
     4921 tgtgcgccag gacttcctca ccagcttgtg ctccataacc tgcaactaga actaggtatc
     4981 tacctgcggc agaacccgat
//
LOCUS       DASWTX010000180         6463 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_349633, whole genome shotgun sequence.
ACCESSION   DASWTX010000180 DASWTX010000000
VERSION     DASWTX010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6463
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349633"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2523
                     /locus_tag="VGD38_02810"
     CDS             <1..2523
                     /locus_tag="VGD38_02810"
                     /inference="COORDINATES: protein motif:HMM:TIGR02243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative baseplate assembly protein"
                     /protein_id="HEY0726972.1"
                     /translation="DVLSFIFGETGEPSVLRTVGSVATQFEQNRTEITLQPFNAELAE
                     AVPILLQFVKNIDVLRGKEGEQPNAANLVFTTMEEIVQEVRLGFPRPVNLWSVMPTAL
                     AGVGVEFPELALLIDQFRDDIEEISENGTPPPPDVTSPAQFIPDLLRPRIPQPRSSLR
                     LNRDLKAAFRQGNDAPAQLLVNIIPELKDTFYHAWSNATLNDTPPELRAVYVMRIQAP
                     LFGANVPAQPTFFTRDVPDPDDDDELIHVKGELRPQNEWREWELAGDEDNETLFLDQA
                     HDEILDSGYVVVQRPSGSTLSRQVLQVVDAETIQRTAYGLTGKTTRLTLSEPWWNVTN
                     EDSIADTLRGTLVLAQSEQLELVDAPILSDVEVTEEDKDTGIVLDGLYNEFPSGRWVI
                     LTGERTDIPNVTGVKGTELLMVSGLRQVDPVVAGEKIHTALLLATPTAYAYKRETLKI
                     YGNVVKATHGETTNETLGNGDGSQALQSFVLKQPPLTFVPAPNASGIESTLKIHVNNV
                     EWREAEAMFELGPRDRKFTTKTADDDKVTVTFGNGKQGSRLPTGVLNVTSTYRRGIGK
                     PGNVRPEQISLLQTKPLGVKSVINPLRASGGADKEDADLIRENAPIAVMALDRLVSLA
                     DYSDFTRNFAGIGKVSGRRLSDGTRQFIHLTIAGIDDAPIDPVSDLYRNLSEALEKLG
                     DVSVEVRVESRELIVLVLSANIRLQPDYLWEPVATEVRARLFAKFGFRKRALGQPALL
                     CEIIACIQNVEGVGYVDVDAFGGVPEKVTDQDGTRRLLTLDEISETVNQIVSASTQTT
                     TSTPAPAVVPGVAKIESGTLIAAQLAIFTPTVPDTIVLNQIK"
     gene            2550..4787
                     /locus_tag="VGD38_02815"
     CDS             2550..4787
                     /locus_tag="VGD38_02815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726973.1"
                     /translation="MTDPRIDRLYELMPDIYRMRDAEQRYPLRALLRVIAEQVNLVED
                     DIAQLYDNWFIETAEDWAVPYIADLLGYRPVLGLGDPSRTNLELTRVLVPRREVANTI
                     RYRRRKGPAALLELLAHDVAGLPARVVEFFKLLGWNQNLNHPHYERAHTANIRNQEAL
                     DLIDGPFDRLAHTVDVRRVNSQRSVGKYNIPSIGVFIWWLKSYPVTWTRAYCAENAGP
                     HCFTFSVLGQDAPLFCKVQPELDPSHIAEEMNVPAPIRRLAFELRPEQFYGRDRSFAI
                     WAPGWNGNDDPLEPVPLESIITADLTGWQYLPPKGYIAVDPVLGRFAFSPSQLPRKGV
                     KVSYHYGFSADMGGGEYSRPIFDPAPEINFVKADEESPEERQVIAPVFYRVGKREGLF
                     PSIGAALAQWQKDDPQDAVIELTESGVYVEPISVTLKKDRTLQLRAANRARPVLRLID
                     WQTDSPDALLVTMEQGSRFTIDGLLVVGRPLRVTGPYRNGEPIVPLCGSSVVIRHCTF
                     VPGWGIDSHCQPYRPAEPSLELYHVRANVRIEHSILGSIQVHEDEVHIDPIPLHIADS
                     IVDSTQAQKEAIGAPGKAGAHVVLTILRTTVFGIVDIHAIELAENCIFMDCLDVARRQ
                     LGCVRFSYVQQHCRTPRRYRCQPDLVTQAIKDSVADPAKQAALIASELIRVRPQFTSV
                     RYGKPAYAQLAHTCAKEITKGADDESEMGAFHDLYRPQREANLLQRLEEFVPAGMDVG
                     LLYAD"
     gene            4813..6441
                     /locus_tag="VGD38_02820"
     CDS             4813..6441
                     /locus_tag="VGD38_02820"
                     /inference="COORDINATES: protein motif:HMM:NF039478.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6519 domain-containing protein"
                     /protein_id="HEY0726974.1"
                     /translation="MKSDITRDTFHPSKHFSRVISQQGRVMLDADNNEQTSILLHYLR
                     TLAMDLIGPYAAPVMRPGFGLLSENDDIFILPGRYYVSGILVQNNARVAYGEQPYFVV
                     PSDDAFAKSIASKANANYWVYLDVWERLVTSIEDDSIRESALGGPDTCSRAQVAWQVK
                     ALDVATNTQNTKAAQRLEWLEKRKKTLEDQLAAATTPEVEEIINAKLDRVNKQIDLVK
                     KLQTRLQNNAPFGKDDCALPIDQLLPRSDAFMAARLNPGLQLVDACITSPDSKYRGAE
                     NQHYRVEIHRGGVAGEATITWSRENGSVATTWIGTTEYDLHVTNARGFSAGNWVELMD
                     DATEFQERPGILARLSKVQGGTLTVDKDSVDQALLAWSSEARNPRIRRWDHFQTEDTV
                     LEDDGSILIVETAPGTSDDDATWIDLEDGLQIQFSEGGEYRTGDYWLIPARVATGSIE
                     WPAAENGMTKQLPPRGVLHHFAPLAFATWANGSVTFAGCDCTFAPLSTCFKATDLPAD
                     FEDVAPGPAARPGTRERRPRAATTRRRTTRPPES"
BASE COUNT         1386 a         1814 c         1923 g         1340 t
ORIGIN      
        1 gacgtgttga gcttcatatt cggtgaaacc ggagaacctt ccgttctgcg cacggtcggc
       61 agtgtcgcga cgcaattcga gcagaatcgt actgagatca cgcttcagcc atttaatgca
      121 gaactcgcgg aggctgtgcc gatcctgctt cagttcgtta agaacatcga cgtcctgcgt
      181 ggaaaagaag gcgaacagcc aaatgccgcg aaccttgtgt tcacgaccat ggaggagatc
      241 gtgcaggagg tccggcttgg tttcccgcgc ccggtgaacc tgtggtccgt catgcccacg
      301 gcgcttgccg gagtcggtgt tgagtttccg gagttggcgc tgctcatcga tcagtttcgc
      361 gatgacatcg aagagatttc agagaacggc acacctccgc ctccggacgt caccagcccg
      421 gcgcaattca ttcccgatct actgaggcca cgcatcccgc aaccgcgcag cagtttgcgg
      481 ctcaatcgcg atttgaaagc cgctttccgg caaggcaacg acgcgccggc acagttgctg
      541 gtgaacataa tcccggaatt gaaggacact ttttatcacg catggtccaa cgcgactttg
      601 aacgatacgc cgccggagct gagagccgtt tacgtgatgc gtattcaagc gccgctcttc
      661 ggcgccaacg tgccggctca gccgaccttc ttcacgaggg atgttcccga tcctgatgac
      721 gatgatgaac tcattcacgt gaagggcgag ctgcggccac agaacgagtg gagagaatgg
      781 gagcttgcgg gcgacgaaga caacgaaacg ttgttcctgg accaggcgca cgatgagatt
      841 cttgatagcg gttacgtcgt cgtacaaagg ccctcgggat cgactctgag ccgccaggtt
      901 ttgcaagtcg tcgacgctga aactattcaa cgaaccgctt acggtttgac cggcaaaacc
      961 acgcggctca cgttatccga gccgtggtgg aacgtcacaa acgaagattc aatcgccgac
     1021 accttgcgcg ggacactcgt gctcgcacaa agcgaacagc tcgagctcgt cgatgcgccg
     1081 atcctcagcg acgtcgaggt cacggaagaa gacaaagaca ccggcatcgt tctcgacggt
     1141 ctttacaacg aatttccctc cggccgttgg gtgattctta caggcgagcg caccgatatt
     1201 ccgaacgtta ccggcgttaa aggcaccgag ttgttgatgg tgtcgggatt gcgccaggtc
     1261 gatccggtcg tcgcgggcga gaagattcac accgcgctct tgctcgcgac tccgactgcg
     1321 tacgcctaca aacgtgagac tttgaagatc tacggcaacg tagtgaaagc cacgcacggc
     1381 gagacgacaa atgaaacttt gggtaacggc gacggcagcc aggcgttgca gagttttgtg
     1441 ttgaagcaac cgccgctgac gtttgttccc gctccgaatg cgtccggcat tgaaagcacg
     1501 ctcaagattc atgtgaacaa cgtggagtgg cgcgaggccg aggcgatgtt tgagcttggc
     1561 ccacgcgatc ggaagttcac cacgaaaaca gcggacgacg acaaagtcac ggtcaccttc
     1621 ggcaacggca aacaaggttc gcgtttgccc acgggcgttt tgaatgtgac ctcgacttac
     1681 cggcgcggca tcggcaaacc cggcaacgtc agacccgaac agatcagcct gttgcaaacc
     1741 aaaccgctcg gcgtcaagag cgttatcaat ccgttgcgtg cgtcgggcgg cgcggataaa
     1801 gaggacgccg acctaattcg cgagaacgcg ccgatcgcgg tgatggcgct cgaccgtctc
     1861 gtttcactcg cagactattc cgacttcacg cgtaacttcg ccggcatcgg caaggtcagc
     1921 ggccgcaggt tgagcgacgg cacgcgccag ttcattcacc tgacgatcgc gggaatcgac
     1981 gacgctccga tcgatccggt ctccgatctt tatcgaaacc tgtcggaagc gctggagaaa
     2041 ctcggtgacg ttagcgtcga ggtacgcgtc gagtcgcgcg aactgatcgt gctcgttctc
     2101 agcgcaaaca ttcgcctgca gcctgactac ttgtgggaac cagttgccac tgaagtgcgc
     2161 gcgcgtttgt ttgcgaagtt tggttttcgc aaacgcgcgc tgggccaacc ggcgctgctt
     2221 tgcgaaatca tcgcgtgtat tcagaacgtc gaaggcgttg gttacgtcga cgttgatgcg
     2281 tttggcggcg tgcctgaaaa agtgaccgac caggacggga cgcgacggct gctcacactc
     2341 gacgagatct cggaaaccgt taatcagatc gtgagcgcgt cgacgcagac aacaacttcg
     2401 acacccgcgc cggcagtagt tccgggtgtc gcaaagattg agagcgggac gttgatcgcc
     2461 gcgcagttgg cgatctttac gccaaccgtt cccgacacga tcgtgctcaa tcaaatcaaa
     2521 tgaaggttgc gtgagctatg aacgcagaga tgactgaccc tcgaatcgat cgcttgtatg
     2581 aactgatgcc cgacatctac cggatgcggg atgcggaaca acgatatccg ctgcgcgcgc
     2641 tgctgcgcgt catcgcggaa caggtcaatc tcgtcgaaga tgacatcgcc cagctttacg
     2701 acaactggtt catcgagacc gcggaagact gggccgttcc ttacatcgcc gacttgctcg
     2761 gctatcgtcc ggtgctcgga ctcggcgatc cgagccgcac gaatctcgag ctcacgcgtg
     2821 tgctggttcc gcggcgcgaa gtggcgaaca cgattcgtta tcgcaggcgg aagggacccg
     2881 cggcgttact cgaactgttg gcgcacgatg ttgccggtct gcccgcgcgc gttgttgagt
     2941 ttttcaaact gctcggctgg aaccaaaacc tgaaccatcc gcattacgag cgcgcgcaca
     3001 cggcgaacat ccgcaaccag gaagcgctgg atttaatcga tggtccattc gatcgtcttg
     3061 cgcacacggt cgacgtgcgt cgtgtcaact cgcagcgcag cgtgggcaag tacaacattc
     3121 cgtcgatcgg cgtttttatc tggtggttga aatcttaccc ggtgacgtgg acgcgcgcgt
     3181 attgcgctga gaatgctggt ccacattgtt tcactttcag cgtgttgggc caggatgcgc
     3241 cgctgttttg caaagtccaa cctgaactgg atccttcgca catcgcggaa gagatgaacg
     3301 tgcccgcgcc gattcgccgc ctcgcgtttg agttgagacc ggaacagttt tacgggcgcg
     3361 atcgaagttt tgcgatctgg gctccgggct ggaacgggaa tgacgatccg ctggaacctg
     3421 ttccgttgga gtcgataatt accgctgatt tgacgggttg gcaatacctt ccgccgaaag
     3481 gctacatcgc ggtcgatccg gtgctcggcc gttttgcttt ctcgccgagt cagcttccgc
     3541 gaaaaggcgt gaaggttagt tatcactacg gcttcagcgc cgatatgggc ggcggtgagt
     3601 actcgcgtcc gatctttgat cccgcgcctg aaatcaactt tgtcaaagcg gatgaagagt
     3661 cgcctgaaga gcggcaggtc atcgcgccgg tcttttatcg tgtcggcaag cgtgagggtt
     3721 tgtttccttc aatcggggcc gcgctggcgc aatggcaaaa ggacgatccg caggacgcag
     3781 tgatcgagct gactgagagt ggtgtttacg tcgaaccgat cagcgtgacg ctgaagaagg
     3841 atcgaacgct gcagttgcgt gcggcgaatc gagcgcggcc ggtgttgcgc ttgatcgact
     3901 ggcaaaccga ttctcccgac gcgctcttgg tgacgatgga acaaggcagc cgtttcacta
     3961 ttgacgggct gctcgtcgtc gggcgtccgc tgcgagtcac tggtccatat cgaaacggag
     4021 aaccgatcgt tccgctgtgt ggatcgagtg tcgtgattcg ccattgcacg ttcgtgcccg
     4081 gttgggggat cgatagtcac tgccagccgt accgtccggc agaaccgagt ctcgagcttt
     4141 atcacgttcg cgcgaacgtg cggatcgaac acagcattct cggttcgatt caggtgcacg
     4201 aagacgaggt ccacatcgat ccgattccac tgcacattgc cgacagcatt gttgattcga
     4261 cacaggcgca aaaagaagcg atcggcgcgc ccgggaaggc cggcgcgcac gtcgtgctca
     4321 cgatcctgcg caccactgta ttcggcatcg tcgacatcca cgcgatcgag ctcgccgaaa
     4381 attgcatctt catggattgc ctcgacgtcg ctcgccgtca gcttggctgc gtcaggtttt
     4441 cttacgtgca acagcattgc cgcacaccgc gcaggtatcg ttgtcagcct gatcttgtta
     4501 cgcaggcgat aaaagacagt gtcgccgatc cagcaaagca agccgcgctg atcgcctcag
     4561 aactcattcg cgtgcggccg cagtttacga gtgttcgtta cggcaagccc gcgtatgcgc
     4621 aactcgcgca cacgtgcgcg aaagaaatca cgaagggcgc cgacgacgaa tcagagatgg
     4681 gcgcatttca cgatttatat cgtccgcaac gcgaggcgaa tttgctccag cgtctggaag
     4741 agtttgttcc tgccggcatg gatgtgggtc tgctttacgc cgattaataa tccttaaaga
     4801 aggaagaaag ccatgaaatc tgacatcaca cgcgatacat ttcacccctc gaaacacttc
     4861 agccgcgtca tcagccagca aggccgcgtc atgctcgacg cagacaacaa cgagcagact
     4921 tcaattctgc ttcactacct gcgtacgctg gcgatggatc tcattggtcc atacgctgct
     4981 ccggtaatgc ggccggggtt cggtctgttg tcagaaaatg acgatatctt tatcttgccg
     5041 ggccgttatt acgtcagtgg cattctggtc cagaacaatg ctcgcgttgc atacggcgaa
     5101 cagccttact ttgtcgtgcc ctctgacgat gcgtttgcga aatcgatcgc gtcaaaagcc
     5161 aacgcgaact actgggtcta cctcgacgtg tgggaacggc ttgttacttc gatcgaagac
     5221 gatagtattc gcgagtcggc gttgggcggt ccggatacgt gttcgcgtgc gcaggttgcg
     5281 tggcaagtga aggcgctcga cgttgcgacg aacacgcaaa acacgaaagc ggctcaacgg
     5341 ctcgaatggt tggagaagcg gaagaagact ctggaagatc agctcgcggc ggcgacaacg
     5401 cccgaagtcg aagaaatcat caatgcaaaa ctcgaccgcg taaacaaaca gatcgattta
     5461 gttaagaagc ttcagacgcg gcttcagaac aacgcgcctt ttggaaaaga tgattgtgcg
     5521 ttgccaatcg atcagttgct gccgcgcagc gatgccttca tggccgcgcg tttgaatccc
     5581 gggctgcagc tcgtcgacgc gtgtatcacc tcgcccgatt ccaaatatcg cggtgcggaa
     5641 aaccagcact atcgagttga gattcatcgc ggtggtgttg cgggcgaggc cacgatcaca
     5701 tggtctcgcg agaatggcag tgttgcgacc acgtggattg gaacgacgga atacgacctg
     5761 cacgtgacga acgcgcgcgg cttctcggcc ggcaactggg ttgagttgat ggatgatgcg
     5821 accgagtttc aggaacgtcc cggcattctc gcgcgcttga gcaaggtgca gggtggcacg
     5881 cttacggtcg ataaagacag cgtcgatcag gcgttgctgg cgtggtccag cgaagcgcgg
     5941 aacccgcgca ttcgtcgttg ggatcatttt caaaccgaag acaccgtgct cgaggacgat
     6001 ggcagcattt tgatcgtcga gacagcgccg ggcacgtctg atgacgacgc gacgtggatc
     6061 gatctggaag atggactaca gattcagttc agtgaaggcg gtgaatatcg cacgggcgac
     6121 tactggttga ttcccgcgcg tgtggcgacg gggagcattg aatggccggc ggctgaaaat
     6181 ggaatgacga agcaactgcc tccgcgcggc gtgcttcatc attttgcgcc gctagccttt
     6241 gcgacctggg cgaatggcag cgttaccttt gctggctgtg attgcacgtt cgcgccgttg
     6301 agcacttgtt tcaaggcgac ggatttgccg gcggatttcg aggacgtagc tcccggtccc
     6361 gcggcgcgcc ccggcacccg cgagcgccgc ccgcgcgcgg ccaccacgcg ccgccgcacc
     6421 acacgccccc cggagagtta agacgcgaaa cgaccgtgca ggg
//
LOCUS       DASWTX010000181         3075 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_371064, whole genome shotgun sequence.
ACCESSION   DASWTX010000181 DASWTX010000000
VERSION     DASWTX010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3075
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_371064"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1406
                     /locus_tag="VGD38_02825"
     CDS             <1..1406
                     /locus_tag="VGD38_02825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726975.1"
                     /translation="LKIIRGIATAGIDSKSAMFSYKKVDYTRIDKKSLNFNMRERTTV
                     RRSIYPQGHLRGLFQVLRDGGLNLDRFVTAVDLDDPYFERRRTKIISRAEFEDDSIRS
                     LDVRLDYDGTPKNVILDPATPTATLDWASSLVNGRMKREVGVSYKVTFKGIDNTERPA
                     SLTSPEQITTLDNLEINPRELYSIVHVPIVALSFPFERYPQIEVHTRYADPANDIRID
                     DTFLLTKDKPEQEWKIFVQDPKLTQFEYKVIFRAANNRDIERAWVTSDEEQVFLRDPF
                     PDKLRVDVVPNVPWTQVQDVFVDLLYEDNEHDIFHQESLHFSQTDATAKSFSVELRNP
                     TLRRVSYNVTIIFSDGRLVEIPRSFTQQRRIIVNANMRGHRIVAVRPQPVDFKAMKIR
                     ELKVETRYRDDEAGLSFADAFTFKSAEDRASFEFDYVDAAKPAYEFRSTVVFTNGMSK
                     ATEWQKTDKDDLTVPVN"
     gene            1430..>3075
                     /locus_tag="VGD38_02830"
     CDS             1430..>3075
                     /locus_tag="VGD38_02830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726976.1"
                     /translation="MLLLGSKTITVDGIEVYADHADPNQFWYLPGPVGLVRKGQNKVA
                     AFTFIKFKPAAVAGGAKGGGFLMFEVNLRLERSLEQRILSKISGLAPGTPRLSAVPFD
                     EGSVRCVALNLEGGGGTVASPGGPGTFNAVEKILGASVPSLHGDNTAACSLTLSQEGA
                     IIIEQAFKQGTAPVGAIYDLKFTGIRPALDVEITADFKRIYTHFSASLSAKYYFVKLG
                     IDAAFEKLVQEGAIKIKVTNFTTSEDMKEKEKWALDFFKQELLSKWFEPTLTLGQVAG
                     GAADATTFPPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPAVRPAA
                     ALVIDSTNPSPLPPDRGLTHTPSATGSQETLTVRGANATVKVDGTPRTLDASGQFTVD
                     VLPGTSHTILVEYPASPPATETFDLFFEYDLPKAAGWRATPPISAGLQRYINNNPVPN
                     DIPFKTSEGPRPTAGVGGAPALRNWIQNNLTNPKTVDIEAHASYEGHANKVQYNTELS
                     MRRLQVAVGIIGSLAQIRSTSATGQQAAQAANRVSAPSSGV"
BASE COUNT          730 a          888 c          844 g          613 t
ORIGIN      
        1 cgttgaagat cattcgcggc atcgccacgg cgggcatcga ttcgaagtcc gctatgttca
       61 gctacaagaa agtcgattac acgcgcatcg acaagaagag tttgaacttc aacatgcgcg
      121 agcggaccac ggtgcgccgc agcatctatc cacagggaca cctccggggt ctttttcagg
      181 tcctgcgtga cggcggcctg aacctcgatc ggtttgtcac tgcggtggat ctcgacgacc
      241 cctactttga acggcggcgc acgaagatca tctcgcgtgc tgagttcgag gatgattcga
      301 ttcgctcgct cgacgtgcgt ctggattacg acggcacgcc caagaacgtg attctcgatc
      361 ctgcgacgcc caccgccacg ctcgattggg ccagcagtct ggtcaacggc aggatgaaga
      421 gggaagtcgg cgttagctac aaggtgactt tcaaaggcat cgacaacacc gaacgtccgg
      481 cgagtctcac ttcacccgag cagatcacga cgctcgacaa cctggaaatc aatccgcgcg
      541 agctgtactc gatagtgcac gtgccgatag tggcgctcag ctttcctttc gagcgttatc
      601 cacagatcga ggtgcacacg cgctacgcag atccggcgaa cgacattcgt atcgacgaca
      661 cgttcctgct gacgaaagac aagccggagc aggaatggaa gatcttcgtt caggatccga
      721 agctcaccca attcgagtac aaggtgatct ttcgcgcggc aaacaaccgc gatattgaaa
      781 gggcctgggt cacgtctgac gaagagcagg tgtttctacg cgatccattc ccggacaagc
      841 tcagggttga cgtcgtgccg aatgttccct ggacgcaagt gcaggatgtc ttcgtcgatc
      901 tgttgtatga agataacgag cacgacatct tccatcagga atcacttcac ttcagccaaa
      961 ctgatgctac cgctaagtcg ttttcggttg agttacgtaa tcccaccctg cgtcgcgtga
     1021 gttacaacgt gacgatcatc ttctcggatg gtcgcctcgt cgagattcca cgctcgttca
     1081 ctcagcagcg tcgcattatc gtgaacgcga acatgcgcgg ccaccggatt gtagcggtcc
     1141 gcccgcaacc cgttgatttc aaggcgatga aaatccgcga gttgaaagtc gaaactcgtt
     1201 accgggacga cgaagcgggt ttgagctttg ccgacgcatt tactttcaag tctgccgagg
     1261 atcgcgcgtc gttcgagttt gattacgtcg acgcggcgaa gccggcttac gaattccgaa
     1321 gtaccgtcgt gtttaccaac gggatgtcga aagcaacgga atggcagaag accgacaaag
     1381 atgatttgac ggtcccggtt aactagtact gcaaacggag acgcaactaa tgttacttct
     1441 tggatcaaaa actattaccg ttgacggcat cgaagtgtat gcggatcacg ccgatccaaa
     1501 tcaattctgg tatttgcctg gtccagtcgg actggttcgc aaaggacaaa ataaagttgc
     1561 cgccttcacg ttcattaaat tcaaaccggc ggctgttgcg ggcggagcaa aaggcggagg
     1621 gttcctcatg ttcgaggtca atctccgcct cgagcgtagc ctcgaacagc gcattctttc
     1681 caaaatatcc gggctcgcgc cgggcacgcc gcgcctctcc gcggtgccgt tcgacgaggg
     1741 aagcgtgaga tgtgtcgcgt tgaaccttga aggtggaggc ggaacagtcg cctcgcctgg
     1801 cggtcccgga actttcaatg cagtagaaaa gattctcggt gcgtcggttc catcgcttca
     1861 cggcgacaac acagcggcgt gtagtctgac gctgagtcag gaaggcgcaa tcatcatcga
     1921 gcaggcgttc aaacaaggca cggcgcccgt gggtgcgatt tacgatctga agttcacggg
     1981 tattcgtccg gcgcttgacg tggagatcac ggccgatttc aaacgcatct acacgcattt
     2041 cagcgccagt ctgtcggcga agtattactt tgtgaagctc ggcatcgatg cggcgtttga
     2101 aaagttagtg caggagggtg cgatcaagat caaggtgacg aacttcacca cttcggagga
     2161 catgaaggag aaagagaagt gggcgcttga tttcttcaaa caggaattgc tgagcaaatg
     2221 gtttgagccg actcttacgc tcggtcaagt cgcgggtgga gccgctgatg caacaacgtt
     2281 tccaccgaca ccgactccaa caccaacgcc aacaccaacg ccgactccaa cgccgactcc
     2341 aacgccaaca ccaacaccaa caccaacacc tactccgaca ccaacgccaa cacctactcc
     2401 gacgcccacg cccgctgtac gtcctgcggc ggcattggtc attgacagca caaatccatc
     2461 tccgctcccg ccggaccgcg gtcttacgca tacgccgtcc gcgactggat ctcaggaaac
     2521 actcacggtc agaggcgcca atgccacggt aaaggtagac ggaacaccgc gaacgctgga
     2581 tgccagcggc cagttcaccg tcgatgttct accgggcacg agccacacca tcctggtgga
     2641 ataccctgcg agtcctcccg ctacggagac gttcgactta ttcttcgaat acgacttgcc
     2701 gaaagccgcc ggctggcgcg ccacgcctcc tatcagtgcc gggttgcaga ggtacatcaa
     2761 caacaacccg gtgcccaacg acattccctt caagacgagc gagggaccgc gtccgactgc
     2821 aggagtcggc ggcgcacccg cgcttcgaaa ttggatccag aacaatttaa cgaatcccaa
     2881 gacggtcgat atcgaagctc acgcgagcta cgagggccat gcgaacaagg tgcagtacaa
     2941 caccgaattg tcgatgcggc ggttacaggt cgcagtaggc atcattggtt cactggcaca
     3001 gattcgcagt acgagcgcga cgggccagca agccgctcaa gctgcaaatc gcgtcagcgc
     3061 gccgagtagc ggcgt
//
LOCUS       DASWTX010000182         4014 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_371074, whole genome shotgun sequence.
ACCESSION   DASWTX010000182 DASWTX010000000
VERSION     DASWTX010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4014
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_371074"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..869
                     /locus_tag="VGD38_02835"
     CDS             <1..869
                     /locus_tag="VGD38_02835"
                     /inference="COORDINATES: protein motif:HMM:NF019935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726977.1"
                     /translation="PRIAFYGLGRLGSAGVDYGSDLDVLFTYDSLVPSPIKTLTQDET
                     YSRLVELMIAALSSITREGYLYRVDLRLRPHGKNGPLVTSADGFLDYLKEESGQWEWL
                     AYVKLRAVGGDLELGKMIETHARHRIHENALRFDQKELKLETRRVRDRLEKEKGSRSR
                     RAGIDIKYGPGGMLDVYFATRYLQLRDEVVDGGEDRSTAFTLDRLREEGSLTEDDYTT
                     LSAGYSLLRSIDHNLRLIVGRSTRLPDPNHVTAHDVALRMGFPSVADLQETLIEQMQA
                     IRDSYNRIVGNA"
     gene            1272..1796
                     /locus_tag="VGD38_02840"
     CDS             1272..1796
                     /locus_tag="VGD38_02840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726978.1"
                     /translation="MFRIKASYADQMELQTTLERAREFFGELRNFADLMPGIEGIRKE
                     AGGIMRWVVRAEVPVIGAVHASFTVEKTEDSPERLEWSPARSEMKNYLRYAAAFEERG
                     HKVLIKIVQHVELRRQHAKDLHRFAILVGESAISNEMQKRVREMIKTFLERARVKLEG
                     EEPLEQESLAENPA"
     gene            complement(1989..>4014)
                     /locus_tag="VGD38_02845"
     CDS             complement(1989..>4014)
                     /locus_tag="VGD38_02845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726979.1"
                     /translation="TFRAWGEREMLRRMVLQIRKLRPDVIITNHDTTSGHGHHQATGR
                     VVLQAFDAAADPKEFSEQLNEAGVWQVQRLFVRSRGADAQGQMFTIDPNESDPVRGMT
                     YAQQALAGLQKHATQGPWPKTVPAGGGRISRYALVKQAANSPALPANAKTPLEGLVLP
                     EQLASRFVAPTIEGKPLTEYADRRLEVLVALINARRRGAYTAPADVVALDPQRFKLMT
                     SRLDKALAVATGVAVNLTPEGSALVPGEKTRITAAISNNGVGEVQIKQLRFRGLGLEA
                     RPSVADKMLPGTETSARIEVTTPKTTGFTVPAAEHLYDGRLFGEPLMAEADLSIEGVS
                     FTAGTEIRRGVAPAIEILEVEPVPYVTTPATSQKPLEFRVKLQNHLTTPFRGVLRVRG
                     PSLETGKEIELQPDQIETSNVVVRSLALTGLMQNTNVDVIVDLRDPKEPIAKRVVPLV
                     YANAIVVAGRKVGYIPSYDKTLERALASLGVDAKQLTVDDIAKSDLSPFHTIIIDNRG
                     YEAHQELIGLNNRLLKFAEDGGTLLVFYHRVNEWNPNEQRKRPQLAPYPIIVGDERVT
                     QEDAPVTFLQPGHPLLRFPNRITQADFADWVQERGLYFPREWDPRYAAVLGTSDKGEQ
                     MLRGGLLVAPYGRGNYIYTSYVWYRQLRAGLPGGYRFFANLISYGRRKED"
BASE COUNT          856 a         1256 c         1081 g          821 t
ORIGIN      
        1 gtccacgcat cgccttctac ggcctgggcc ggctcggcag cgcgggcgtc gattacggtt
       61 ccgatctcga cgtgctgttc acttacgatt ctctggttcc atctccgatc aagacgttaa
      121 cgcaggacga aacctactcg cgtttggtcg agctgatgat tgcggcgctg tcgagcatca
      181 cgcgcgaggg ttatttgtat cgtgtcgatc tgcgtttgcg tccgcacggc aaaaacggtc
      241 cgctggtgac gagcgctgac ggctttctcg actacttgaa agaggagagc gggcagtggg
      301 aatggcttgc ttacgtcaag ctccgcgccg tcggcggcga tctggaattg ggaaaaatga
      361 tcgagacaca cgcacgacac cgcattcacg aaaacgcatt gcgcttcgat cagaaggaac
      421 tgaaactcga gacgcggcgt gtgcgcgatc gtttggagaa agagaagggg agccgcagcc
      481 gccgcgctgg aatcgatatc aaatatggac cgggaggaat gctcgacgtt tactttgcga
      541 cgcgttattt gcaactgcga gatgaagtgg tcgacggcgg cgaggatcgt tcgaccgcgt
      601 tcacgctcga tcgcctgcgt gaagaaggtt ctttaactga agacgattac acgacgctga
      661 gcgcgggcta cagtctcctg cgctcgatcg atcacaacct gcgcctaatc gtcggccgct
      721 cgacgcgcct ccccgacccc aaccacgtca ccgcccacga cgtcgctctg cgaatgggct
      781 tcccttccgt agccgactta caggaaacac tgatcgaaca gatgcaagcc atccgcgaca
      841 gctacaaccg catagtcggt aacgcgtagc gcgcccgttc tgagttcaag ctttagcttg
      901 cccgtcaaaa gcacaaccta aaggttgaac tcaaaacgct ttaagcttgt gttggcgttc
      961 cggtggcttc gtaccagcag cgagtgcacc agcggtgggt tgcctggcgc tcctcgagag
     1021 agtagccggc ggagaggggc aggcgcttga ccatttcgcg ttcttcgtcg gtgagttcag
     1081 accatgactt catcccgcgt ttatcgcagc gcggacatgt ctgtgcggcg ttcatattaa
     1141 ataattcttt ccaaatgcag ttagatattt actagtgaat agtcctcgtg taagttagca
     1201 atggccgggc agaaaaccaa actcccgccc tcgcgcatca acatctcgga gaaacggtta
     1261 acggagaaca aatgtttcgc atcaaggctt cctacgcaga ccaaatggag ttgcagacca
     1321 cgctggaacg ggcgcgcgag ttttttggcg agctgcgcaa tttcgccgac cttatgccgg
     1381 ggattgaggg catacggaag gaagcgggag gcatcatgcg ttgggtggtg cgtgcggaag
     1441 tgccggtcat cggcgcggtt catgccagct tcacagttga gaagactgag gattctccgg
     1501 aacgtctcga gtggtcgccg gcgcgttcgg aaatgaaaaa ctacctgcgc tacgcggcgg
     1561 cgttcgaaga gcgcgggcac aaagttctta tcaagatcgt ccagcacgtg gagctgcggc
     1621 gccaacatgc taaggacctg caccgctttg cgatcctcgt cggcgagagc gccatcagca
     1681 acgagatgca aaaacgcgtg cgcgagatga tcaaaacctt cctcgaacgc gcccgcgtca
     1741 aactcgaagg cgaagaaccc ctcgaacaag aatccctggc cgaaaacccg gcgtagttcg
     1801 cgaacgcttt cagcgttcca tgcgattttg ttatgcggtc ccagggttga agcaaccctg
     1861 ggctgaaatt cgcaaacgcc ttcgacgtta tcttagattt ctttcaaacg ccttcggcgt
     1921 attttcttaa atcccttcaa actggcctta gcgttggacc acgctcgccc gcagcgccaa
     1981 ctccagacct agtcctcttt ccttctgccg tagctgatca ggttcgcgaa gaagcgatac
     2041 ccgccgggta gtccggcccg gagttggcgg taccagacgt agctcgtgta gatgtaattg
     2101 ccacgcccgt acggcgccac gagcaaaccg ccgcgaagca tctgttcgcc tttgtcactc
     2161 gtccccaaca ccgccgcata acgcggatcc cattcccgcg gaaaatagag cccgcgttcc
     2221 tgaacccagt cagcaaagtc agcctgcgtg atcctgttcg gaaaacgcag cagcggatgc
     2281 cccggctgta gaaacgtaac cggcgcatcc tcctgcgtca cacgttcatc gccaactatg
     2341 atcgggtacg gcgccagctg cggccgcttt cgctgctcat tcggattcca ctcattcacg
     2401 cgatggtaaa acaccagcag cgttccacca tcctcggcga acttcagcag ccgattattc
     2461 agcccaatca actcctgatg cgcttcgtaa ccacgattgt cgatgatgat cgtgtgaaac
     2521 ggcgacaagt cagacttcgc aatatcgtca accgtcaact gcttcgcatc cactccaagc
     2581 gacgccagcg cacgctcgag cgtcttgtca taactcggaa tgtaaccaac cttgcgcccc
     2641 gcgacgacga tggcattcgc ataaaccagc ggcacgacgc gtttcgcaat cggctccttc
     2701 ggatcgcgca agtcaacaat cacgtcgaca ttcgtgttct gcatcaatcc cgtcaacgca
     2761 agactgcgca ccacaacatt cgacgtctcg atctgatcgg gttgcagctc aatctcctta
     2821 cccgtttcga gacttggacc acgcacccgc aacacgcccc gaaacggcgt cgtgagatga
     2881 ttctgaagct tcactcgaaa ctcgagcggc ttctgcgacg tcgcgggcgt ggtgacgtac
     2941 ggcaccggct caacttcaag aatctcgatc gccggcgcca ctcccctgcg aatctccgtg
     3001 cccgccgtaa acgacacccc ttcaatcgaa aggtccgctt ccgccatcag cggttcgcca
     3061 aacaaacgcc cgtcgtaaag atgttccgcc gcgggcaccg taaagcccgt ggtcttcggc
     3121 gtggtcactt caatccgcgc ggacgtttcc gttcccggca acatcttgtc ggcaacactc
     3181 ggccgcgctt ccaaccccaa tccacgaaac cgcagttgct tgatctgaac ctcgccaacg
     3241 ccgttgttgc tgatagcggc ggtgattctg gtcttctcac cgggcacgag cgccgatcct
     3301 tcgggagtca aattcactgc aaccccggtt gcaaccgcca gcgccttgtc gagccgcgac
     3361 gtcatcaatt tgaaacgctg cggatcgagc gcgaccacgt cggctggagc cgtgtaagca
     3421 cctcggcggc gcgcattgat cagcgcgacc aaaacctcaa gccgccggtc ggcatactca
     3481 gtcaacggct tgccttcgat agtcggcgcc acaaaccgcg acgccaattg ctccggcaac
     3541 acgagcccct caagcggcgt cttcgcattc gccggcagcg ccggcgagtt tgccgcctgc
     3601 ttcacgagcg cataacggct gatgcgtccg ccaccagccg gcacggtctt gggccacggt
     3661 ccctgcgtcg catgtttttg caatccagcc agcgcttgct gcgcgtaagt cataccgcgc
     3721 acgggatcgc tctcgttcgg atcgatcgtg aacatctgcc cctgcgcatc agcgccgcgc
     3781 gatcgcacaa acagccgttg cacctgccac acgcccgctt cattcagttg ttcggaaaac
     3841 tctttcggat cggcagccgc gtcaaaagcc tgaagcacca cgcgtcccgt tgcctgatga
     3901 tgtccatgcc cgctcgtcgt gtcgtggttc gtgatgatta catcgggacg aagcttgcga
     3961 atctgcaaca ccatccgtcg cagcatctcg cgttcgcccc acgcgcgaaa cgtc
//
LOCUS       DASWTX010000183         3118 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_261994, whole genome shotgun sequence.
ACCESSION   DASWTX010000183 DASWTX010000000
VERSION     DASWTX010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3118
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261994"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..363)
                     /locus_tag="VGD38_02850"
     CDS             complement(<1..363)
                     /locus_tag="VGD38_02850"
                     /inference="COORDINATES: protein motif:HMM:NF013663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003951 - NAD+ kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006741 - NADP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+)/NADH kinase"
                     /protein_id="HEY0726980.1"
                     /translation="MSSIKRVGIVLKPHQPQALKTICELTIWLGQRGIELIGGPQIER
                     ERIEHETGCSVVEVEPEDLAAAVDLVLVLGGDGTMIATARLIADEEVPVLGVNYGGLG
                     YLTEFRIEELYDALEMILA"
     gene            complement(350..1117)
                     /locus_tag="VGD38_02855"
     CDS             complement(350..1117)
                     /locus_tag="VGD38_02855"
                     /inference="COORDINATES: protein motif:HMM:TIGR00478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEY0726981.1"
                     /translation="MRRERIDKLLVERGLAESRTKAQAMVMAGVVLVNEQRVEKPSDQ
                     FVPDVQIRIKHADDPTSRYVGRGGLKLEAALREFEINVRGLVCLDVGASTGGFTDCLL
                     QNGAAKVFAIDVGHNQIDWKLRNDPRVEVREGVNARYLQPQDFPVRFDLVVIDVSFIS
                     LTKILSSVVTLLQPNASMVVLIKPQFEVGRGEVGSGGIVRDQEKRLNAIKNVHEFAAS
                     LGLKTEKTIESPITGAEGNIEYLAHYSYHPASKHVVN"
     gene            complement(1159..1422)
                     /locus_tag="VGD38_02860"
     CDS             complement(1159..1422)
                     /locus_tag="VGD38_02860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726982.1"
                     /translation="MPRQLFRERECIHRDEGADGEFYNGAFYIQALQRLRVDDAVKMA
                     GRVSSFFWSDAPHIIVWLCNDCAAELRLTDTPRAVTNASRRQA"
     gene            complement(1533..2063)
                     /locus_tag="VGD38_02865"
     CDS             complement(1533..2063)
                     /locus_tag="VGD38_02865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726983.1"
                     /translation="MEERPHFEDEITTLTARPVVPLEEIDTKVKYRRRWFLGGAFAMA
                     MLLGAATALLAAYFKVRNAPDPEIQSLSVTQPEPVVPTVEIIPERPQPRPKERDLEED
                     RTVRSNYPVPQPRVDEEDELRRIRDAVLYDSWEERRARRVERRERRERRERRRAQHRN
                     RDLSNIDEIFEGPHRP"
     gene            complement(2200..>3118)
                     /locus_tag="VGD38_02870"
     CDS             complement(2200..>3118)
                     /locus_tag="VGD38_02870"
                     /inference="COORDINATES: protein motif:HMM:NF014798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HEY0726984.1"
                     /translation="AVVALTAAMPDGTGVCKALEKFPERSFDVGIAEQHCVTFAAGMS
                     CEGLKPVCAIYSTFLQRGFDQVIHDVCIQDLNVKFCLDRGGIAGGDGQTHHGLLDIAY
                     LRGVPNIIVMAPKDEGEMRDMLYTMLEHVGPAAMRYPRGNGIGADIKREPELLEIGKG
                     EILRDGGEIAIVAYGAMVHPSLEAAERLASRDRIETTVVNARFVKPLDAPLLLALART
                     KRLIVTVEEAYLAGGFGSAVLELLEENGLQDKVRVVRMGIPDRLITHGDAKLLLAKYG
                     LDADGIYNRVKESIEVLDERRAKPGRVLS"
BASE COUNT          649 a          933 c          837 g          699 t
ORIGIN      
        1 cgcgaggatc atctcgagcg cgtcgtagag ttcttcgatg cgaaactcgg tcaggtaacc
       61 gagcccgccg taattgacgc cgagcaccgg cacttcctcg tcggcgatca accgcgcggt
      121 ggcgatcatc gtgccgtcgc cgccgaggac cagcaccaga tcgaccgccg ctgcgagatc
      181 ttcaggctcg acttcaacta cggagcagcc ggtttcgtgc tcgatgcgtt cgcgttcgat
      241 ctgcggacca ccgatgagct cgataccgcg ttggcccaac cagatggtca actcgcaaat
      301 cgttttcaga gcttgaggtt gatgcggttt tagaacaatg cctacccgct taattgacga
      361 catgttttga ggccggatga tacgaataat gcgcgaggta ttcaatgttt ccctcggcgc
      421 cggttatggg cgactcaatt gttttttccg tttttaatcc cagtgaagcc gcaaactcat
      481 gcacattttt tatcgcattt aatctcttct cctggtctcg cacaataccg ccgctaccga
      541 cttcaccacg tccgacttcg aactgcggct tgatcaggac gaccatcgaa gcgttgggtt
      601 gtagtagcgt tactactgag gaaaggatct tggttaacga aataaacgac acgtcgataa
      661 caaccagatc gaacctgact ggaaagtcct gcggctggag gtaacgggcg tttactcctt
      721 ccctcacctc aacgcgcgga tcgtttctca gtttccaatc gatctggttg tgacccacgt
      781 cgatcgcaaa caccttcgcg gcgccgttct gcaacaggca atccgtgaag ccaccggtgg
      841 acgcgccgac gtcgagacac accaatcccc gaacatttat ctcaaactcg cgcaacgcgg
      901 cttcgagttt cagtccacca cggccgacat agcgcgacgt cggatcgtca gcatgtttga
      961 ttcgaatctg aacgtcagga acaaattgat cggaaggttt ctcaacgcgc tgctcgttaa
     1021 cgagcacgac cccggccatg accatcgcct gcgccttcgt gcgcgactcc gccaggcctc
     1081 gttcgaccag cagcttgtcg atgcgttcgc gtctcacacg ggagacatta ctttggagtg
     1141 cggcgagttg tcaccggatc acgcttgtcg tcgcgaagcg ttggtgacgg cccgtggcgt
     1201 gtcggtgagt cggagttcgg cggcgcagtc gttacaaagc cagacaataa tgtgcggagc
     1261 atctgaccaa aagaaggagc tcactctacc tgccattttc accgcatcgt caacgcgcag
     1321 ccgttgcaac gcctgaatgt aaaacgcgcc gttgtaaaac tcgccatctg caccttcgtc
     1381 ccggtggata cactcccgct cgcgaaacaa ttgtctcggc atattggatc accacgtttc
     1441 cttccgcatg cgcggaatat taaaaccgtt aataagaaac gtcggggcgc ttttataaag
     1501 tgtgagtctt tcgacggggc agcgctacta tatcacggac ggtgcggtcc ttcgaaaatt
     1561 tcgtcgatgt ttgacaggtc gcgattgcga tgctgcgcgc gacgccgctc gcggcgttca
     1621 cgacgttcgc gacgttcaac tctccgcgca cgccgctctt cccagctatc gtacagaacc
     1681 gcgtctctta tccttcttaa ctcatcttct tcgtcaactc gcggttgagg aaccggataa
     1741 ttcgatctga cggttctgtc ttcttctaaa tccctctcct tcggccgagg ctgtggacgc
     1801 tccgggataa tctccacagt cggtacaacc ggttcgggtt gcgtcacgga taaagactgg
     1861 atttcaggat cgggcgcatt gcggactttg aagtacgccg cgagcaacgc cgtcgccgcc
     1921 cccaacaaca tcgccatcgc aaacgcccct ccgagaaacc agcgcctgcg gtatttcacc
     1981 ttcgtgtcga tttcttccag aggaacgacg ggccgggcag tcaacgtcgt tatttcatcc
     2041 tcaaaatgcg gtcgctcttc catttcgtgg gataggttgc aaacacgagg ccacgcgcgt
     2101 aggcctcgat tgagtcgttt tttcgggtat taaaacgagg agaggagacg aaaaccttcc
     2161 gatttggtgc acgaaaacga cgcgctgggc tgaaatcgct tacgaaagca cgcggccggg
     2221 cttcgcgcgg cgttcgtcaa gaacttctat actctctttc acgcgattgt aaattccgtc
     2281 agcgtcgagc ccgtatttcg ccagcaacaa cttcgcgtcg ccatgcgtga tcagccggtc
     2341 gggaatgccc atgcgcacga cgcgaacttt gtcctgcagc ccgttctctt cgagcaactc
     2401 gagcactgcc gaaccaaagc cgcccgccag ataagcttct tcgaccgtca cgatcaaacg
     2461 cttcgtgcgc gccaacgcga gcagcagcgg cgcgtcgagc ggtttcacga agcgcgcgtt
     2521 cacgacggtt gtctcgatgc gatctctgct agcgagtcgt tcggctgctt cgagtgacgg
     2581 gtggaccata gcgccgtaag cgacgatcgc gatctcgccg ccgtcgcgca gaatctcgcc
     2641 tttgccgatc tcgagcagtt cgggttcgcg tttgatgtcc gcgccgatgc cgttgccacg
     2701 cggataacgc atcgccgcgg gaccaacgtg ttcgagcatc gtgtagagca tgtcgcgcat
     2761 ttcgccttcg tctttcggcg ccatcacgat gatgtttgga acgccgcgca ggtaagcgat
     2821 gtcgagcagt ccgtgatgcg tttgtccgtc gccgccggca atgccgccgc gatcgagaca
     2881 aaacttcacg ttgagatcct gaatgcagac gtcgtgaatg acctgatcga agccgcgctg
     2941 cagaaacgtg gagtagatcg cgcagacggg tttgagtcct tcacacgaca tgcccgccgc
     3001 gaacgtgaca cagtgttgct cggcaatgcc gacgtcgaat gatcgttcgg gaaacttttc
     3061 gagcgctttg caaacgcccg tgccgtctgg catcgcagcc gtcaaagcaa caaccgcc
//
LOCUS       DASWTX010000184         1505 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_131851, whole genome shotgun sequence.
ACCESSION   DASWTX010000184 DASWTX010000000
VERSION     DASWTX010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1505
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131851"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1266)
                     /locus_tag="VGD38_02875"
     CDS             complement(<1..1266)
                     /locus_tag="VGD38_02875"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR01349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045254 - pyruvate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0004738 - pyruvate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0004742 - dihydrolipoyllysine-residue
                     acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex dihydrolipoamide
                     acetyltransferase"
                     /protein_id="HEY0726985.1"
                     /translation="MATKVIMPKLSPTMEEGQISRWLKKEGDKVAMGEPLAEIDTDKA
                     TMEMQALTNGVLRKIIVGEGQSAPLGEPIAIVGEADEDISSLLAEAPAAAPAKPAAQE
                     APAQPEPPPPPRAAAQQPAPPQAQAAAAGSATNGRQTATAPAQSGRLIVSPLAARMAA
                     ESGLDLRSVQGSGPNGRIIKKDIEAALSQPKVAPASQRYPRAVEPAQFHPGQIAAASA
                     YRDEPATQIRQTIAKRLVTSLGPVPHFFLTTDIEMDRAAEMRRGINALDPDLKISIND
                     IIIKVTAAALMQHPEVNASFQEKFVRYYEQADIGVAVAIEDGLITPVVRAANQKSLSQ
                     IAAEVRELAERARSKRLKPEEYTGATFSISNLGMFGIDEFTAVINPPEGAILAIGAMT
                     PKPVVRDNEIVIRQIMRVTMSCDHRVIDGA"
     gene            complement(1277..>1505)
                     /locus_tag="VGD38_02880"
     CDS             complement(1277..>1505)
                     /locus_tag="VGD38_02880"
                     /inference="COORDINATES: protein motif:HMM:NF014799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HEY0726986.1"
                     /translation="KTNRVVVAEESHPLCGVNAEISMQIMERAFDYLDAPIKRVSGAD
                     VPMPYAKNLETLAIPDVARIVAAVREVAYLD"
BASE COUNT          253 a          459 c          461 g          332 t
ORIGIN      
        1 agcgccgtcg ataacgcgat gatcgcacga catcgtgacg cgcatgatct gccggatgac
       61 gatctcgttg tcacgcacga ccggcttcgg cgtcatcgcg ccgatggcga gaatcgcgcc
      121 ttccggtgga ttgatcactg ccgtgaactc gtcgatgccg aacatgccga gattgctgat
      181 cgagaacgtt gcgccggtgt actcttccgg cttcagacgc ttcgagcgcg cgcgttcggc
      241 aagctcgcgc acttcagccg cgatctggct cagcgacttc tgattcgccg cacgcaccac
      301 gggtgtgatc aagccgtctt caatcgccac tgccacaccg atgtcggcct gttcgtagta
      361 acggacaaac ttttcctgga acgacgcatt cacttccgga tgctgcatca gcgccgcggc
      421 cgtgactttg atgatgatgt cgttgatgct gatcttcaga tcgggatcga gcgcgttgat
      481 cccacggcgc atttccgcgg cgcgatccat ctcgatgtcg gtcgtgagaa agaaatgcgg
      541 caccggcccg agcgacgtga ccaaacgctt ggcgatcgtt tgtcgaattt gcgtggccgg
      601 ttcgtcgcgg tacgcagatg cggccgcgat ctgccccggg tgaaattggg ccggctcgac
      661 ggcgcgtgga taacgttgcg acgcaggcgc gactttcggt tggctgagcg cggcttcgat
      721 gtctttcttg atgatgcgtc cgttgggtcc gctgccctgg accgaacgca gatcgagacc
      781 cgattccgcg gccatacgcg ctgcgagcgg cgacacgatc aatctgccgg actgagcggg
      841 tgcagtcgcc gtttgacgtc cgttggtcgc actgccagcg gcagcagctt gcgcctgtgg
      901 cggcgcgggt tgttgggcgg cggcccgagg cggcggtggt ggttctggct gcgccggtgc
      961 ttcttgagca gccggctttg cgggtgcagc agcaggagct tccgcaagca gggaagagat
     1021 gtcttcgtca gcttcgccga cgatggcgat cggttctccg agcggcgccg actgtccctc
     1081 gccaacgata atcttgcgca ggacgccatt ggtcagcgcc tgcatttcca tcgtcgcttt
     1141 gtctgtatcg atttccgcga gtggctcgcc catggcgacc ttgtcgccct ctttcttcag
     1201 ccagcgcgag atctgtccct cctccatcgt cggagagagc ttcggcatga ttaccttagt
     1261 tgccatagag ttttagctag tcgagataag ccacttcacg tactgcagcc acaatcctcg
     1321 cgacgtcagg tattgccagc gtctcgaggt tcttcgcgta aggcatcggc acatcagcac
     1381 ccgacacacg tttgatcggc gcgtcgagat aatcgaaagc gcgctccatg atctgcatgc
     1441 tgatctcggc gttcacgccg cagagcggat gcgactcttc agccacgacc acgcgattcg
     1501 tcttc
//
LOCUS       DASWTX010000185         2017 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_349732, whole genome shotgun sequence.
ACCESSION   DASWTX010000185 DASWTX010000000
VERSION     DASWTX010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2017
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349732"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1215)
                     /locus_tag="VGD38_02885"
     CDS             complement(<1..1215)
                     /locus_tag="VGD38_02885"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HEY0726987.1"
                     /translation="MIADAAQLKPKLSTLSIALPSLRDAVTIRRDERGIPFIDAANEA
                     DLYFAQGYATASDRLWQMDFLRRTARGQLAEVFGPGAVEVDKLHRTYGFTLVAEKLLA
                     RASTKTREVLESYARGVNAFITQCDAKSLPLEFQVLQYQPKEWTTIDSIVLGKLFAQQ
                     LSFTVDADILRALLSDLPQERFEALLPQSSPLDLLEERDRTYEKHEFGAEERAILTGI
                     LTKMRCSRAASSSDGEVGSNSWVVSGDKSVSGKPLLASDPHLPPTSPSIWHIVHLNAP
                     EVRVAGVAVPGVPGVMIGHNEWIAWGVTNLCPDVQDLYFEQFDCGDTDLYKTPAGWRA
                     ADVRNEEIVVRDPKGAKPDSVSFEVKVTRHGPVIFESGSLGLSLRWTALDADVIDLDT
                     FLTINRARNWDEF"
     gene            complement(1178..1729)
                     /locus_tag="VGD38_02890"
     CDS             complement(1178..1729)
                     /locus_tag="VGD38_02890"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024836.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acyltransferase"
                     /protein_id="HEY0726988.1"
                     /translation="MIKISEYDPNLVADIVKFRREAYINRGRDPHHVEHWSADEFDQK
                     ATHVVMFNEEKKIIGAVRIIAGEQWTIDEYTDFKYDKVNGVEFGRLAISQPSHNGKRV
                     LSELIKAACRHCAKQGRTHFYGFVIAGLKKELQRLRVPCEVLSSAVAPMGEDSFLVRF
                     SVAELIAFRLNGDSGRSTTEAEA"
     gene            complement(1726..>2017)
                     /locus_tag="VGD38_02895"
     CDS             complement(1726..>2017)
                     /locus_tag="VGD38_02895"
                     /inference="COORDINATES: protein motif:HMM:NF014698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HEY0726989.1"
                     /translation="GGKRSFCNSLLIYHYRQATEFYPKHQYVPTLSDGSPFPHDLLAE
                     ISGYANERTHRTHWRANDILIFDNSRYMHGRTGFKDTQRQILVRMGHVKGEQ"
BASE COUNT          401 a          612 c          570 g          434 t
ORIGIN      
        1 aaactcgtcc cagttgcgcg cgcgattgat cgtgaggaag gtatcgagat cgataacgtc
       61 ggcgtcgagt gctgtccagc gcaacgaaag cccgagcgat ccgctttcaa aaatgactgg
      121 accatgacgc gtgaccttca cctcaaaact aaccgaatcc ggttttgcgc ctttcggatc
      181 gcgcaccacg atctcttcgt tacgcacgtc cgccgcacgc cagccggccg gagtcttgta
      241 gagatccgta tcaccgcaat cgaattgctc aaagtaaagg tcctgaacgt ccggacaaag
      301 attcgtcacg ccccacgcga tccactcgtt gtgtccgatc atcactcccg gcacacccgg
      361 caccgcgact ccggcaacgc gaacttccgg cgcgttcaga tgcacgatgt gccagatcga
      421 aggcgacgtc ggcggcaggt gcggatcgct cgccaacaat ggcttgcctg aaacgctctt
      481 gtcgccgctg acgacccaac tgttgctgcc gacttctcca tcactgctgg acgccgcgcg
      541 cgagcaccgc atcttcgtca aaattcccgt caggatcgca cgctcttcgg cgccgaattc
      601 atgcttctcg tacgtccggt ctcgctcttc cagtaaatca agcggcgagc tctgcggcag
      661 caacgcctca aaccgttctt gcggcagatc gctgagcagc gcgcgcagga tgtcggcatc
      721 gaccgtaaac gagagttgct gcgcgaacag ttttccgaga acgatcgagt cgatcgtggt
      781 ccactctttc ggctgatact gaagcacctg gaattcgagc ggcaacgact tcgcatcgca
      841 ctgtgtgatg aacgcgttta ctccgcgcgc gtacgactcg agcacctcgc gtgtcttggt
      901 tgacgcacgt gcgagcagct tttcggcgac gagcgtgaag ccgtaagtgc gatgcagctt
      961 gtccacttca accgcgcccg gtccaaacac ttcagccaat tggccgcggg ccgtgcggcg
     1021 caggaagtcc atctgccaca ggcgatcgct cgccgtggca tagccctgcg cgaagtaaag
     1081 atcagcctcg ttcgccgcat cgatgaacgg aatgccacgt tcatcgcgcc ggatcgtgac
     1141 cgcgtcacga agcgacggca acgcgatcga aagcgtacta agcttcggct tcagttgtgc
     1201 tgcgtccgct atcaccgttc aacctgaaag caatcaactc tgcaacgcta aacctgacca
     1261 ggaacgagtc ttcgcccatc ggcgccaccg ccgacgaaag cacttcgcaa ggcacgcgca
     1321 gccgctgcag ttcctttttc agtcccgcaa tcacgaagcc gtagaaatgc gtccggcctt
     1381 gttttgcgca atgtcgacag gcggctttga ttagctccga gagcacgcgc ttgccgttgt
     1441 gcgacggctg cgaaatcgcg agccggccaa attcgacgcc gttgactttg tcgtatttga
     1501 agtcagtgta ttcgtcgatt gtccactgct cgccggcgat gattcgcacc gcgccgatga
     1561 tctttttctc ttcgttgaac atcacgacgt gggtggcctt ctggtcaaac tcgtcggcgc
     1621 tccagtgttc gacgtgatgc ggatcgcggc cccggttgat gtaggcttcg cgacggaact
     1681 taacgatgtc cgcgacgagg ttaggatcgt actcggatat tttgatcatt gctccccctt
     1741 tacgtggccc atgcgcacga gaatttgccg ttgcgtgtct ttgaatccgg tgcggccgtg
     1801 catgtacctg gaattgtcga aaatgaggat gtcgtttgcg cgccagtgcg tgcggtgggt
     1861 gcgctcgttg gcgtagccgg agatttccgc gagtaggtcg tgcggaaacg gcgagccgtc
     1921 gctcaaggtc ggcacgtatt gatgctttgg atagaactcg gtcgcctggc ggtagtggta
     1981 aatcaatagc gagttgcaaa acgagcgctt gccgccc
//
LOCUS       DASWTX010000186         4145 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_1727, whole genome shotgun sequence.
ACCESSION   DASWTX010000186 DASWTX010000000
VERSION     DASWTX010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4145
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1727"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(185..1396)
                     /locus_tag="VGD38_02900"
     CDS             complement(185..1396)
                     /locus_tag="VGD38_02900"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY0726990.1"
                     /translation="MESVLKNKPAGWRVRVTDYLALEHNVTIASAAVFLLGFGEELWK
                     KFLPKYLEALGATTPIIGLFGTAQDFFDACYQYPGGFIADRFGRRRAFLFFITLASLG
                     YLVYLFSTWWPFVFIGLAFVMAWQSMASPAIFAVIGDSLPRERRAMGFTLQSILKRVP
                     IVIAPIVGGFLIASLGLVNGVHAGLIITLVLAAVTFLLVLKIRTHNHQTHSINIRGVW
                     RSFDRILKRLLISDIIIRTCEGMTGVLAILYVTNIHRLSVAAYGTLIAIQTITSIVVY
                     VPAGKIAVRIGRKPFVVLTFLSFALFPVAIILAPSFAWLIVAYVIGGLREIGEPARKA
                     MIVDLAQDNIRARSVGLYYLVRSLSITPAAAIGGLLWNVAPQVPFVTAGLIGLIGTVV
                     FIMTVEERYAS"
     gene            complement(1374..2429)
                     /locus_tag="VGD38_02905"
     CDS             complement(1374..2429)
                     /locus_tag="VGD38_02905"
                     /inference="COORDINATES: protein motif:HMM:NF042524.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromate resistance protein ChrB
                     domain-containing protein"
                     /protein_id="HEY0726991.1"
                     /translation="MLRRNQTSTHEWVLLIHLLPPRPTNLRVRIWRKLQKLGSVAIKN
                     SVYVLPATEKAHEDFQWLKQEIESAGGEASVFKAASVEGATDQEIIAAFNKARDDEFA
                     AIAAEFDGLTGAIREQARGKHLSAGRLAAHESEIDRLHAELERIAANDFFAAAGRAAA
                     FAAFERSQKEIRSAQGPKTKTATPQTANGKLDVSKYQGQRWVTRRNLHIDRLASAWLI
                     KQFIDKRPRFYFVSEGEMIEGAIPFDMFGAEFTHHGEDCTFETMLKRFGLSENKGLRE
                     IAEIVHDIDLKDDKFHRLEAAGLNAIIDGLSKVLRDDRKLLQQTGVVFDGLHALLSKD
                     EVKPGRKTKRNGKRFKK"
     gene            2617..4020
                     /locus_tag="VGD38_02910"
     CDS             2617..4020
                     /locus_tag="VGD38_02910"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY0726992.1"
                     /translation="MILVSLGVLLPVLVLTYLQYRSVTELANKTKGAYKDTLRQRLAN
                     VQLQMKQRLEDVAAQKLNPAGVRRFENFAADAHLCSLFERSRTAQSFLDDNHNYLFLH
                     QPEGIYIFHTNRSAGVLLDERFVTDDLIAGSVKAAITPPGIAITISDENQRVLYSNAV
                     PKQGYILEDNFDPPFSNWKAGIGLKTASIEDLGRDSFWHSVMATVLVLILLLGGVVLI
                     VRATDREARLAQAKANFVANVSHELKTPLSLLSLFSEILELGRVKNDEKRMEYYRVMR
                     HESRRLNKLIDNILDFSKIEAGRKTYNFAEGDMAEVIENVLSSYRYQIDNSGFQIETN
                     IAPDLPPVSMDPDAMSQAISNLLDNAIKYSRDVKQLSIAADQRGAELSVEIADRGIGI
                     SRAEQAKIFEKFYRVGNGLVHDVKGSGLGLSLVKHIVEAHKGTISVESDAGKGSRFTI
                     LLPLARKNGDAATGVQE"
BASE COUNT          942 a         1121 c         1209 g          873 t
ORIGIN      
        1 gcttgaaaga caacggcttc aggatcacgg cgtttacgat gctgaagatc gagctgctgg
       61 ccgcgatcgc gagggccagt acaaggatca cgagcaggga aaacacgggc cgtttgcgta
      121 gcgagcgaac cgagtagcga atgtctctga gcaagccttc catagtcgta acctccgatt
      181 gagcctaact ggcgtaacgt tcctcgactg tcatgatgaa gaccacggtt ccgatcagcc
      241 cgatcaatcc ggccgtgacg aacggcactt gcggcgcgac gttccagagc aatcccccga
      301 tcgccgcggc cggggtgatt gaaagactac gaacgagata gtagagaccg acggaccgcg
      361 cgcgaatgtt gtcctgagca agatcgacga tcatcgcttt tctcgcaggc tcgccgatct
      421 ctcgcaagcc gccgatcaca taagcgacga ttagccacgc gaaactcggg gcgagaatga
      481 tcgcgacggg aaacagcgca aagctcagga acgtgagaac cacaaaaggt ttgcgcccga
      541 ttcgaaccgc gatctttccg gcgggaacgt agaccacgat cgacgtgatc gtttgaatcg
      601 cgatcagagt gccgtaagcg gcgacgctga ggcggtgaat gttggtcacg tagagaatcg
      661 cgagcacacc ggtcatgcct tcgcaggttc ggataatgat gtcggagatc agcagccgct
      721 tcaggatgcg atcgaacgat cgccagacgc cgcgtatgtt gatcgaatgt gtctgatggt
      781 tatgagtcct gattttgagt acgagtagga atgtaacggc ggctaagacg agggtgatga
      841 tcagtccggc gtgaacgccg ttgacgagtc ccagcgaagc gatcaaaaaa ccgcccacga
      901 tcggcgcgat cactatggga acgcgtttca agatcgattg cagcgtgaag cccatagcgc
      961 gtcgctcgcg aggcagagaa tcgccgatca ccgcgaagat cgcgggagac gccatgctct
     1021 gccacgccat cacgaatgca agtccgatga atacaaacgg ccaccacgtg ctgaagaggt
     1081 aaacgaggta accaagcgac gcgagcgtga tgaagaagag gaaagcccgg cgtcgtccaa
     1141 aacgatccgc gataaagccg ccggggtact gatagcaagc gtcgaaaaaa tcctgggccg
     1201 tgccgaagag accgatgatc ggcgtcgtgg cgccaagcgc ctcgaggtat ttgggcagga
     1261 acttcttcca gagttcttcg ccgaacccga gcaggaaaac cgccgcggac gcgatcgtga
     1321 cgttgtgttc gagcgcgagg tagtcagtga ctcgaacgcg ccaaccggcg ggtttatttt
     1381 ttaaaacgct ttccatttcg ttttgtcttg cgtcccggtt tcacctcatc cttgctcagc
     1441 aacgcgtgaa ggccgtcaaa gacaacgccc gtctgttgca gtaacttgcg atcgtcacgg
     1501 agcaccttgc tgagcccgtc gatgatggcg ttcagtcccg cggcttcgag acgatgaaac
     1561 ttgtcgtctt tcaaatcgat gtcgtgaacg atctcggcga tctcacgcag tcctttgttt
     1621 tcgcttagtc caaagcgctt cagcatcgtt tcgaaggtgc agtcttcgcc gtgatgcgtg
     1681 aactcggcgc cgaacatgtc gaagggaatc gcgccttcga tcatttcgcc ttcagagacg
     1741 aaatagaaac gcgggcgctt gtcgatgaac tgtttgatta gccacgccga ggccagccgg
     1801 tcgatgtgaa gattgcggcg cgtcacccag cgctgccctt gatatttcga aacgtcgagc
     1861 ttcccgttcg cggtttgggg agtagctgtt tttgtcttgg gaccctgggc cgatcgaatc
     1921 tccttctgag atcgctcgaa agcggcgaac gcggccgcgc gtcccgcggc ggcaaagaag
     1981 tcgttcgcgg cgatgcgctc caactcagca tgcagccgat caatctcgct ttcgtgcgcc
     2041 gctagcctgc cggcggacaa atgcttgccc cgcgcctgtt cgcgaatggc tccggttaag
     2101 ccgtcgaact ccgctgcaat cgccgcgaac tcatcgtcgc gagctttatt aaaggccgcg
     2161 ataatctcct gatccgtcgc accctcgacc gacgccgcct tgaacaccga agcctcgccg
     2221 ccggccgact cgatctcctg ctttagccat tgaaagtctt cgtgggcctt ttcagttgcg
     2281 ggtagcacgt agacggagtt cttgatcgcg accgagccga gcttttgcag cttgcgccag
     2341 atccgcacgc gcaggtttgt tggacgaggc ggtaacaggt gaatcagcaa tacccattcg
     2401 tgcgtcgatg tctggtttcg ccgtagcata agtaacgtga ggctgagtgt aacgagtgtt
     2461 acgttttatg gcaaggctcg gtgcgccgcg atcggtcggc ggttacaact ttttacaatt
     2521 ggcgcgggtg cgtgggccgg tctccgggtt ctcgatgtat gctatcgccg tatgttccga
     2581 ggagtgttca gcaggttatc gctgcggaaa aagctggtga tactcgtgtc actgggcgtg
     2641 ttgcttcccg tgctggtgct gacctatctg cagtatcgat cggtcacgga actcgcgaac
     2701 aaaaccaagg gcgcttacaa agatacgctg cgacagcgtt tagccaacgt gcagctccag
     2761 atgaaacagc gcctggagga cgtcgctgcg caaaagttga atccggcagg cgtgcggcgg
     2821 ttcgaaaact tcgcggcaga cgcgcatctc tgctcgctct ttgagagatc gcgaacggcc
     2881 caaagttttc tcgacgacaa tcacaactac ttattcctcc accagcctga agggatttat
     2941 atctttcaca cgaatcgttc tgcgggcgtg ttgctggatg aacgtttcgt tactgacgac
     3001 ttgatcgccg gcagtgtgaa ggccgccatc acgccgcccg ggatcgcgat cacgatcagc
     3061 gacgagaatc agcgcgtgct ttattcaaac gcggtgccga aacagggata catactcgaa
     3121 gacaacttcg atcctccttt ctcgaattgg aaagccggaa tcggactgaa gacggcaagc
     3181 atcgaggatc tcggccgcga cagtttctgg catagtgtta tggcaaccgt ccttgtgctg
     3241 attctcttac tcggtggcgt agtcctgatc gtcagggcca ccgatcgcga agcacgtttg
     3301 gcgcaggcga aggcaaactt cgtcgccaat gtctcgcacg aactaaagac accgctgtcg
     3361 ctgctcagcc tgttttctga aattctcgag ctgggccgcg tgaagaatga cgagaagcgg
     3421 atggaatact accgcgtgat gcgtcatgaa agccgtcgtt tgaacaagct gatcgacaac
     3481 atcctcgact tctcaaaaat cgaagccggg cggaagacgt ataattttgc tgaaggtgat
     3541 atggcggaag taattgagaa cgtgctttcc agttatcgtt atcaaatcga caactccggt
     3601 ttccaaatcg aaacaaacat cgcgcccgat ctgccgccgg tatcgatgga tcccgacgcg
     3661 atgtcgcagg cgatctcgaa tctgctcgac aacgcgatca agtattcgcg cgacgtgaag
     3721 cagctttcga tcgccgcgga ccagcgcgga gcggaacttt ctgttgagat cgcagatcgc
     3781 ggcatcggaa tttcacgcgc cgaacaggcg aagattttcg agaagttcta tcgtgtcggc
     3841 aacgggctgg tccatgatgt taaaggcagt ggtctcggct tgtcgctggt gaagcacatc
     3901 gttgaagctc ataagggaac aatctcggtc gaaagcgacg ccggtaaggg aagtcggttt
     3961 acgattctcc tgccgctcgc gcgcaaaaac ggcgacgccg caaccggtgt ccaggagtaa
     4021 cagttggcca aagttctgat aatcgaagac gaacccaaca tgattctcgg gctgaaagat
     4081 agctgcgagt atgaaggcta cgaggtctgt gtcgcgcgcg acgggcgtga aggtttggaa
     4141 aaagc
//
LOCUS       DASWTX010000187         2927 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_111243, whole genome shotgun sequence.
ACCESSION   DASWTX010000187 DASWTX010000000
VERSION     DASWTX010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2927
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111243"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..565)
                     /locus_tag="VGD38_02915"
     CDS             complement(<1..565)
                     /locus_tag="VGD38_02915"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HEY0726993.1"
                     /translation="MKLVVFLLRSSLGTVCLAVLAGIVAGVSNTGLLIVINSALSKSD
                     TPQTTLIWAFALLCLAMLVSRAASWIFLVQLAHRVTFKLRLELSARILAAPLQHLEKL
                     GAPRLLATLTDDVAMIASALIATPMLAVHIVVVITCLAYLGWLSLTALLGVFGFLIVA
                     VLCYQIPLRRALTYLGAGREELDALLKH"
     gene            746..2557
                     /locus_tag="VGD38_02920"
     CDS             746..2557
                     /locus_tag="VGD38_02920"
                     /inference="COORDINATES: protein motif:HMM:NF024491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HEY0726994.1"
                     /translation="MRLLKASGSVLLLLLITSAMRVQAQERLCDSANEDCRARLWALI
                     DAETVGIDVAFWFMQDDSYATKIVNRFRAGVPVRVLVDPRANPSAPGNAAVLDQLRAA
                     GIPMRYKVAEGILHWKMMLFAGQNMLEFSGANYSGDFFVPASPNVNYIDEAIYFTNDP
                     ALIRSFKTKYDDVWTNTVQYANFANISGPLTRRYPISTISADLNFPPTPDGSQDFLVR
                     TQQNFNAETQKIDIIMYRITNDGYTNATIAARQRGIPVRLIHEPNEYRNPERQWDSWN
                     VDRLHMAGVQIKMRKHLGLNHQKSVLLYSKGMTIFGSSNWTGPSSNFQLEHNYFTTKS
                     WFFQWFVQQFERKWNSTTENAPFVPLPPNVPTNLSPVNSATAQPTTITLQWEGGPWAH
                     KYDIYFGTSPDPPLLVSNASTAQSGAVSGQPLLNTGSPDNGVVESFKIATTLQPGTTY
                     FWRVVGKTMANQTANGPTWSFTTQGTTPPGPAPAPVLLTDTSTNRALVLHSPLLSREP
                     FSLTTPVNFSSDKRTRVMLFVAGDVSASSNLSVSGVSAQGVTHQLPIEHVAKLPGPAS
                     VTTLIVRLPQDSALQGDLSVTLTVAGVRSNSVVFAIR"
     gene            complement(2561..>2927)
                     /locus_tag="VGD38_02925"
     CDS             complement(2561..>2927)
                     /locus_tag="VGD38_02925"
                     /inference="COORDINATES: protein motif:HMM:NF020133.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726995.1"
                     /translation="PGGLSDDEKIGLGKLMYESHDSYSACALGSQATDLLVQLVRATG
                     SDEGLFGAKITGGGSGGTVAVLGDRNAERAVEKVAARYAELMGYEPYIFRGSSPGSAA
                     FGHLVARLREKGQEEDAGP"
BASE COUNT          674 a          868 c          793 g          592 t
ORIGIN      
        1 agtgtttgag caacgcgtcg agctcttcgc ggccagcgcc gagataagtc aaagcacgcc
       61 tcagcgggat ctgataacaa agcaccgcca caatcagaaa cccgaaaact ccgagcagcg
      121 ccgtcaacga caaccaaccc agataggcaa gacacgtaat aaccacgacg atgtgaacgg
      181 cgagcatcgg cgtcgcgatc agcgcgctcg caatcatcgc gacgtcgtcg gtgagcgtcg
      241 cgagcaaacg cggtgctccg agtttctcca ggtgctgaag cggagcggcg agaatacgcg
      301 ctgacagttc cagccgcagt ttgaaagtga cgcgatgcgc gagttggacc aggaagatcc
      361 aagatgcggc gcggctgacg agcatcgcca gacacaacag cgcaaatgcc caaatcagag
      421 tggtttgcgg ggtgtcagac ttgctgagcg cagagttgat aacaatcagc aaaccggtgt
      481 tgctaacgcc ggcgacgatg ccagccaaca ccgcgagaca cacggttccg agcgacgacc
      541 gcaaaagaaa cacgactagc ttcatgacta gttagcgaat ggatgcagtt gtgctgggcg
      601 ggagaaaatt caggacacag ttgaccattc acgaacgatt cagtcaaccc gcggcgtcac
      661 cagttcgaaa taatcttgag agatcttctc catctcgttt gcataacatc ccgcaacccg
      721 acaaatcact ggaccactca gcgctatgag attgctcaag gcgtcaggct cggtacttct
      781 cctcttactc atcacctcag cgatgcgggt gcaggcacag gagcgtttgt gtgattccgc
      841 aaacgaggac tgccgcgcgc gcttgtgggc actgatcgac gccgagacag tcgggatcga
      901 cgtcgcgttc tggttcatgc aggacgattc ttacgccacc aaaatcgtga atcggttcag
      961 agcgggtgtg cccgtccgag tattggtgga tccgcgcgca aatccatcgg ctcccggcaa
     1021 cgccgctgtg ttggaccaac tgagagcggc gggcatcccg atgcgttaca aagtcgccga
     1081 agggatcctg cattggaaga tgatgttgtt tgcgggccag aacatgctgg agtttagcgg
     1141 cgcaaactac tcgggcgatt ttttcgttcc cgcctcgcca aacgtcaatt acatcgacga
     1201 agccatttac tttacgaacg atccggcgct cattcgcagt ttcaagacga agtatgacga
     1261 cgtttggacc aatacggttc agtacgcaaa cttcgcgaac atttcgggac cgctcacgcg
     1321 ccggtatccg atctccacga tcagcgccga tctcaacttc ccgccaacgc ccgacggcag
     1381 ccaggatttt ctggtgcgca cgcagcagaa cttcaacgct gaaacgcaga agatcgacat
     1441 catcatgtat cgcatcacaa atgacggata cacgaacgcc accatcgccg cccggcagcg
     1501 aggaattccc gtgcgtctga ttcacgagcc gaacgaatat cgcaatcccg agcgacaatg
     1561 ggattcgtgg aatgtggacc ggctgcacat ggcgggcgtc cagataaaga tgcggaagca
     1621 tctcggcttg aaccatcaga aatcggtcct tctttacagc aaaggaatga cgatcttcgg
     1681 atcgtcgaat tggaccggtc cttcgtcgaa cttccagttg gagcacaact acttcaccac
     1741 gaagtcgtgg ttctttcagt ggttcgtgca acagtttgag cgcaaatgga actcgacgac
     1801 tgaaaacgcg ccgtttgttc cgttgccgcc gaatgtgccg acgaatcttt caccggttaa
     1861 ctcggcgacc gcgcaaccga cgacgatcac gcttcagtgg gaaggtgggc catgggctca
     1921 caaatacgac atctatttcg gtacttcccc agacccgccg ctgcttgttt caaacgcgag
     1981 caccgcgcag agtggagcgg tgtcgggcca gccgcttctg aacaccggat cgcccgacaa
     2041 cggtgtcgtc gaatcgttca agatcgcgac tacgctgcaa ccgggaacga cttacttttg
     2101 gcgcgtcgtc ggcaagacga tggcgaacca gacggccaat ggaccaacct ggagtttcac
     2161 gacgcaggga accactccgc ctggaccagc acctgcgccg gtgctcctta ctgacacgtc
     2221 gacaaaccgg gccttagtgc tgcattcacc gttactctca cgcgaaccct ttagcctcac
     2281 gacgcccgta aacttctcct cggataaacg cacgcgcgtg atgctgtttg ttgcgggtga
     2341 tgtgagtgcg agtagtaact tgtctgtctc gggtgtcagc gcgcagggtg taacgcatca
     2401 actgcccatc gaacacgtag caaaactccc cggccccgct tcggtaacga cgctaatcgt
     2461 cagactccct caggattccg cgctgcaggg agatctttcc gtcaccctga cggtagcggg
     2521 tgttcgaagc aacagcgtgg tcttcgcgat tcgttgacga ttatggacct gcgtcttcct
     2581 cctgaccctt ctctctgagt cgcgcgacca gatgtccgaa ggccgcactg cctggtgacg
     2641 agcctctgaa aatgtacggt tcgtatccca tcagttcggc atagcgtgca gcgacttttt
     2701 ccaccgcgcg ttcggcgttg cgatcgccga gcaccgcgac cgttccacca ctgccgccac
     2761 ctgtaatctt ggcgccgaag agtccctcgt ctgatcctgt tgctctgaca agttggacca
     2821 acagatccgt ggcttgtgaa ccaagcgcgc acgctgaata gctgtcgtgt gactcgtaca
     2881 tcagttttcc caacccgatc ttttcgtcgt cactcaaacc gcctggg
//
LOCUS       DASWTX010000188         2088 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_392570, whole genome shotgun sequence.
ACCESSION   DASWTX010000188 DASWTX010000000
VERSION     DASWTX010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392570"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..883)
                     /locus_tag="VGD38_02930"
     CDS             complement(<1..883)
                     /locus_tag="VGD38_02930"
                     /inference="COORDINATES: protein motif:HMM:NF013761.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HEY0726996.1"
                     /translation="MISRNALIWLSRQEGLKDFAARFKPFKKLTTRFVAGENIDEAVS
                     HIRQINAENCSASFDHLNESVGSEAEAEREVVEYLTILKQITETGINSNVSIKLTQFG
                     LGLDPELAYKNARRVVEEAHRRGNFVRVDMEDSKVTQITIDIFKRLRAEFDLNTVGIV
                     LQSYLFRTYADAQKLVKIPARIRICKGAYLEPPEVAFPDKKDVDANYVKVMQLLLSSG
                     TYHGIATHDPKMIDATVDFATREGIGKDKFEFQMLFGVRRDLQRQLARDGYNVRIYVP
                     YGKHWYPYFMRRLAERPA"
     gene            1062..1403
                     /locus_tag="VGD38_02935"
     CDS             1062..1403
                     /locus_tag="VGD38_02935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726997.1"
                     /translation="MRLKLVFAASALAAVVGAGSCIALVFGVFSVEALSRPRPGLLVA
                     STLLLPIATIVFAALFVYRHTARRRKLQALLTTLIATLLTLGFFILASVLSARRVPTE
                     PTQPVGPHIAA"
     gene            complement(1400..1978)
                     /locus_tag="VGD38_02940"
     CDS             complement(1400..1978)
                     /locus_tag="VGD38_02940"
                     /inference="COORDINATES: protein motif:HMM:NF014069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEY0726998.1"
                     /translation="MPNRAEAWELLCEYTKGDSLRKHALAVEAAMRACAKRYNEGPAD
                     EDEWGVVGLLHDFDYEMFPSADQHPFTGANILCGRGYSERFIRAIMGHATYTGVPRDT
                     DMARALFATDELCGFLVACALVRPSRSLDDLEVSSVKKKLKDKAFARTVNRDDIRQGV
                     EELNVNLDDHIRFVIDALRPVQREIGLNEASG"
BASE COUNT          398 a          597 c          587 g          506 t
ORIGIN      
        1 tcgcaggccg ttcggccagc ctgcgcatga agtaaggata ccagtgtttt ccgtatggaa
       61 catagattct tacgttgtat ccgtcgcggg cgagctgccg ttgcaggtca cgccgtacgc
      121 cgaacagcat ctggaactca aacttatctt tcccgatgcc ttcgcgtgtc gcgaagtcga
      181 cggtggcgtc gatcatcttc ggatcgtgcg tggcgatgcc gtgatacgtt ccgctcgaaa
      241 gcaacagttg catcaccttg acgtagtttg cgtcgacgtc tttcttgtcc ggaaacgcga
      301 cttcgggcgg ttcgagatat gcgcctttgc aaatgcgtat acgcgccggg atttttacga
      361 gcttctgcgc gtcggcgtag gtcctgaaca agtacgactg caacacgatc ccaacagtgt
      421 tcaggtcgaa ttcagcgcgc aggcgtttga agatgtcgat cgtgatttgc gtgactttcg
      481 agtcttccat gtcgacgcga acaaagttcc cgcgacgatg cgcttcttcg actacgcgcc
      541 gtgcgttctt ataagcaagc tcgggatcga gaccgagtcc aaactgcgtc agtttgatcg
      601 aaacgtttga gttgatgccc gtctcggtga tctgtttgag tatcgtgaga tactcgacca
      661 cttcgcgttc cgcttccgct tcgcttccaa ccgactcgtt caaatgatcg aacgaagcac
      721 tgcagttttc cgcattgatc tggcgaatgt gggaaacggc ttcgtcgatg ttctcgccgg
      781 ctacgaaacg ggtcgtaagt tttttgaagg gcttaaaacg ggcggcaaaa tctttgaggc
      841 cttcctgtcg tgacagccaa atcagcgcgt ttctagagat catccgttga agttcattac
      901 cgcctttaag ttttgagttc agcctttagg ctgctcttcc gtcagcaagc taaagcttga
      961 actctaaaca tggtcctgcc ttgtggtatt cttggcgggt ttttctccca ccaatcaagg
     1021 gagggacttt tgcacaaaac caatttgagg aacgttcgcg aatgcgactg aagcttgtat
     1081 tcgccgcgtc ggcgctcgcc gccgttgtgg gtgctggttc ctgcatagcg ctcgtgttcg
     1141 gcgtcttctc agtcgaggcg ttgtcgcgtc cgcgtcccgg gctgctggtc gcctcgacgc
     1201 tgttgctgcc gatcgcgaca atcgtcttcg ccgctctctt tgtttatcgt cacaccgccc
     1261 ggcgccgcaa gttacaagcg ctactgacaa ccctcatcgc cacactgcta accctcgggt
     1321 tctttattct tgcttcagtc ttgagtgctc gccgcgttcc gactgaaccg acgcaacctg
     1381 tcggaccaca catcgccgct tagccgctcg cttcgttcaa tccaatctcg cgttgcaccg
     1441 gacgcagtgc gtcgatcacg aaacgtatgt gatcgtcgag attgacgttc aactcttcga
     1501 cgccctgacg aatgtcgtcg cggttcaccg tgcgcgcgaa ggctttgtct ttcagtttct
     1561 ttttgacgga cgagacttcg agatcgtcga gactgcgcga tgggcgcacg agtgcgcagg
     1621 ccactaaaaa gccacagagc tcgtctgtgg cgaagagtgc gcgggccatg tcggtgtcgc
     1681 gcgggacgcc ggtgtaagtg gcgtggccca tgatcgcgcg gatgaagcgt tcggaatagc
     1741 cgcggccgca gagtatgttg gcgccggtga acgggtgctg atcggccgag ggaaacatct
     1801 cgtaatcgaa gtcatggagc aggccgacca cgccccactc atcctcatcc gcgggcccct
     1861 cgttgtagcg tttcgcgcac gcccgcatag cagcctcgac ggcgagggcg tgtttgcgca
     1921 ggctatcgcc cttcgtgtac tcacacaaca attcccaggc ttcggctcgg ttgggcatga
     1981 agcgtcaaac tagcacgggc gaggcgtcgc agcaagagag cataacgccg aaggcgttcg
     2041 caagtttcag cccagggttg gccacaaccc tgggtacgac gaaccccc
//
LOCUS       DASWTX010000189         2855 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_175479, whole genome shotgun sequence.
ACCESSION   DASWTX010000189 DASWTX010000000
VERSION     DASWTX010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2855)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2855)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2855
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175479"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(109..1122)
                     /locus_tag="VGD38_02945"
     CDS             complement(109..1122)
                     /locus_tag="VGD38_02945"
                     /inference="COORDINATES: protein motif:HMM:NF020133.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0726999.1"
                     /translation="MIIESSAPPRVDLEGGTIDIWPLYLFHPGATTVNFALSLYARCR
                     IETNDDGRIVLESRDRKVAFETHLSALEDLLQEERLELISKLVHFFKPTTGFHLVAES
                     TVPAGAGLGGSSALAIACIGALNRLVGNRYEERKFVTSAATVESTVIKVPAGFQDYYP
                     PLYGSVSCVHFRADGMERERLEFNYEELERRIAICYTGEPRLSGINNWEVYKRHIDGD
                     PELFELFEGIRDSARNIREALLADDWDRVAEIMKQAYPIRKRLAPTITTPQMDMLVEK
                     ALANGAEAAKVCGAGGGGCIAFFCASGRRKDVEAALAAEEGVEVLDWKLAQDGLTITE
                     TFD"
     gene            complement(1150..1875)
                     /locus_tag="VGD38_02950"
     CDS             complement(1150..1875)
                     /locus_tag="VGD38_02950"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEY0727000.1"
                     /translation="MHLDFLYEFIFRYGLYAVFILVMLEGDITLLIGGVLAHSGFFGE
                     YSFLQLLIWATLGGCASDNIAYFAGRGFCEGVKKFRFYRAARPRLERLTNKFGVLSIF
                     LSKYIYGLRWASCVFYGVGRMPYPRFLLVSFFSCFLWVFILAGAGYFFSGAVMGLIGD
                     FQRLGKVLLVIVVLGIVAFYLAERFWLSPKVEEADPERVRELEHAAAEKLQDLREEIQ
                     EHIPFHHRGEEKKRVAKHEGDGD"
     gene            complement(1973..2440)
                     /locus_tag="VGD38_02955"
     CDS             complement(1973..2440)
                     /locus_tag="VGD38_02955"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY0727001.1"
                     /translation="MQIRTILLPTDFSECGNYALSYAASLARTFKASIICVNVIEPIV
                     PTVGYSGMTEPLPIADITEQLEDSAERELPKLAECDDCKGLDVEELVVHGEAASEIVR
                     VAAERNVDLIVISSHGRTGLGRILFGSTAESVVRHAPCPVLVVKPPQQEETEQ"
     gene            2499..>2855
                     /locus_tag="VGD38_02960"
     CDS             2499..>2855
                     /locus_tag="VGD38_02960"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEY0727002.1"
                     /translation="MTTPRKNFIGINVSSSRIRAAVVDEQGAIIQRVESQISSQNIVP
                     QLATIARDLRPALGAVVALGVALPGLVNRQTDRVVDPRGMPVTMVEDLHGELMRATGL
                     RGEIENDANAAAYGEFK"
BASE COUNT          732 a          889 c          685 g          549 t
ORIGIN      
        1 tcgcacgtct cgctgcagtc gcagcggccg ctaagcaacg ctctgaaggt gggtagaatt
       61 taaggccaat aatagaagag ccaatagagt cttagctcgc aaccgggttt agtcgaacgt
      121 ctctgtaatc gtcagcccgt cctgcgcgag tttccagtcg agaacttcga cgccttcttc
      181 agccgctaac gcagcttcaa catccttgcg ccgccccgaa gcgcagaaga acgcaataca
      241 tccaccacca cctgcaccac aaaccttcgc cgcttcagcc ccattcgcca acgccttctc
      301 aaccagcata tccatctgtg gcgtcgtgat cgtcggcgcg agccgcttcc gaatcggata
      361 agcctgcttc atgatctcag ccactcgatc ccaatcatcc gccaacaaag cctcgcgaat
      421 gttgcgcgcc gaatctcgaa tcccctcaaa cagctcaaac aactccggat cgccatcgat
      481 gtggcgcttg taaacttccc aattattaat ccccgaaaga cgcggctcgc ccgtgtaaca
      541 gatcgcaatc cggcgttcca actcctcgta attaaactcc agccgctcgc gctccattcc
      601 atccgcacga aaatgcacac acgaaaccga tccgtacagc ggcggataat aatcctgaaa
      661 accagccggc actttgatca ccgtcgactc aacagtcgcc gcactcgtca caaacttccg
      721 ttcctcataa cgattgccca ccagccgatt caacgcacca atacacgcaa tcgccagcgc
      781 cgacgaacca cccaaacccg cgcccgcagg cacagtgctt tccgcaacga gatgaaatcc
      841 tgtggtcggc ttgaagaagt ggaccagttt cgagatcagt tccaaacgct cttcctgcag
      901 caaatcttcg agcgctgaaa ggtgtgtttc aaaagcaact tttcgatcgc gcgactcgag
      961 cacgatgcgg ccatcgtcgt tcgtctcgat ccggcaacgg gcataaagtg aaagcgcaaa
     1021 attaactgtg gttgcgccgg gatgaaaaag ataaagcggc cagatatcga tagtgccgcc
     1081 ctcgaggtca actctgggag gtgctgaaga ttcgatgatc atttgttttt caatttaaca
     1141 ctttcaacgt taatcgccat caccttcgtg cttggcgaca cgtttcttct cctcaccgcg
     1201 atgatgaaaa gggatgtgtt cctgaatttc ctcgcgcagg tcctgcaact tctcggcggc
     1261 tgcgtgttcc agctcccgca cacgctccgg gtcagcctct tcaactttcg gcgacaacca
     1321 aaatcgttcg gccagataaa acgcgacgat ccccagcacc acgatcacca gcaacacttt
     1381 ccccagccgc tggaagtcgc caatcaaacc catcacggcg ccgctgaaga aataacccgc
     1441 gcccgcgaga atgaagaccc acagaaaaca actaaagaac gaaactaata aaaatcgagg
     1501 gtaaggcatc cgcccgacgc cgtaaaaaac acacgacgcc cagcgcaatc cgtaaatgta
     1561 cttggaaaga aaaatcgaca gaacgccgaa cttgttcgtc agccgttcca gcctcggccg
     1621 cgccgcgcgg tagaagcgaa acttcttaac gccctcgcaa aacccgcggc ccgcaaagta
     1681 agcgatgttg tcactcgcac acccacccag cgtcgcccag atcaaaagct gcaaaaagct
     1741 gtactcgcca aaaaacccgc tgtgcgccag cacgccgcca atcaggagcg tgatgtcacc
     1801 ctccagcatg accaaaataa aaaccgcgta gagcccgtat cggaagatga attcgtagag
     1861 aaagtcgagg tgcatgaaga aaccagggct acaaacctca aatccgagaa agcctgggag
     1921 cagatatcaa acgctggcgg gtcaaagaat aaactggagg ggtcattgtt gactactgtt
     1981 ctgtttcctc ttgttgtggg ggcttaacga ccaaaaccgg acacggcgcg tgtctcacga
     2041 ccgattccgc cgtcgaacca aagagaatcc ggcccaaacc ggtgcgcccg tgcgacgaaa
     2101 tcacgatcaa atcgacgttt cgctcggcgg caacgcgcac aatctccgac gcagcctcgc
     2161 cgtgaacgac caattcttcc acgtcaagac ccttgcaatc gtcacactca gcgagtttcg
     2221 gcaattcgcg ctccgcggag tcttcaagct gttcggtaat gtcggcgatc ggcaacggct
     2281 ccgtcattcc ggaatacccg accgtcggca cgatcggctc gatcacattc acacaaataa
     2341 tggaggcttt aaacgtgcga gccagcgagg cggcgtagga gagagcgtaa ttgccacact
     2401 cgctgaagtc agtcggcaaa agaatggtgc gaatctgcat agccactttg tgtcttttgg
     2461 cccgtcttgt ggcacaattc tactcccagg cttgtcgtat gactactccg agaaaaaatt
     2521 tcattgggat taatgtctcc agctccagga ttcgcgccgc ggtagtggac gaacagggcg
     2581 ccataatcca gcgtgtcgag tcgcaaattt catcgcaaaa catcgtccca cagctcgcga
     2641 caatcgccag agatctgcgg cccgcgctcg gagccgtcgt tgctctcggc gtcgcgcttc
     2701 ccggtttggt taaccggcaa acagaccgcg tggtcgatcc acgcggcatg ccggtgacga
     2761 tggtcgagga ccttcacggg gaactaatgc gcgccaccgg tctgcgcggt gagatcgaaa
     2821 acgacgcgaa cgccgccgcg tacggcgagt tcaaa
//
LOCUS       DASWTX010000190         2306 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_306325, whole genome shotgun sequence.
ACCESSION   DASWTX010000190 DASWTX010000000
VERSION     DASWTX010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306325"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1023
                     /locus_tag="VGD38_02965"
     CDS             <1..1023
                     /locus_tag="VGD38_02965"
                     /inference="COORDINATES: protein motif:HMM:NF012271.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HEY0727003.1"
                     /translation="GWRIGRDPVFENDGHAHTDCGDQACGHGVNPRFVVDLNGDGFRD
                     IVGFGNESIYRALGGPNGFGSTRGMLRALVTAQGFPWNAYEDVVPTFFPRMAGDVDAD
                     GMVDLVAFDHDDVKVVRSSDQPPPNGPKAPTNLKVTGTTQTSISLKWEDNSADERRFF
                     IYYDESPSTGNTQLAVRPENSTSATINNLTPETKYCFKVHAENVFGISAPSNTACDET
                     MPEPEPTPTPTPSPTGIKEIQVFNCNLDNHAVHIWTFDITLGTWKNHGKLDSLAKEGS
                     CNTVGVTPFTVPLQQGHWFFYVAVDPLLLGCSGNDPTDVFCQRSTYPNAWFGDPNGPV
                     LINTVN"
     gene            complement(1101..>2306)
                     /locus_tag="VGD38_02970"
     CDS             complement(1101..>2306)
                     /locus_tag="VGD38_02970"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HEY0727004.1"
                     /translation="DKARLNYEAFQNALYAAHPELRTQRGEAPIINAQELAELLPNSS
                     SVLLEFVVTEEQTYLFAITKPADKAVVQLYTLPIKRAELEKQIESFRKQLASRDLGFR
                     TSALKLYDLLLKPAHVQLRGKTNVVIAPDSNLWDLPFQALVDTGGRFLIEDAAITYAP
                     SLTVLREMSKRRISQTAPRTSPTLLAFGNPVSEQAKTDRVSALRDGSLDPLPEAAEEV
                     KALARLYGPSRSKVYVGPDAREDRVKNEAGQAGILHFTTHGTLNNASPMYSYLTLAEG
                     GPNDDGLLEAWELMQLDLKAELAVLSACETARGRIGAGEGVIGFSWAMFIAGVPATVV
                     SQWKVESASTRDLMVSFHRSLFSPRAPQLSKPTKTDALRQAALKLMRNPETSHPFYWA
                     GFVLVGDGG"
BASE COUNT          493 a          645 c          677 g          491 t
ORIGIN      
        1 ggttggagaa tcgggcgcga tcccgtcttc gaaaacgacg gtcacgcgca tacggattgc
       61 ggagatcagg cttgcggcca cggagtgaat ccgcggttcg tcgtcgatct aaacggcgac
      121 ggcttccgcg atatcgtcgg gttcggtaat gaatcaatct atcgcgcact cggtggtcca
      181 aacggattcg gatcgactcg cggcatgttg cgcgcgctcg taaccgcgca aggctttccg
      241 tggaatgcgt acgaagacgt agtgccgacg ttttttccgc gcatggcggg tgacgtcgac
      301 gccgacggca tggtcgatct cgtcgctttc gatcacgatg acgtgaaggt ggttcgttcg
      361 agcgatcagc cgccgcccaa tgggccaaag gcgccgacca atctcaaggt cacgggaaca
      421 acgcagacct cgatctcact caagtgggaa gacaacagtg ccgacgagcg ccggttcttc
      481 atctactacg acgagagtcc gagcactggt aacactcagc ttgccgtgcg accggaaaac
      541 tcgacgagcg ccacgatcaa caatctgacg cccgaaacga agtactgttt caaagtgcac
      601 gcggagaacg tcttcggcat atctgctccg agcaatactg cgtgcgacga aacgatgccc
      661 gaaccggagc caacgccgac accaacgccg tctccaacag ggatcaaaga gattcaggtg
      721 ttcaactgca acctggacaa tcacgcggtt cacatctgga ccttcgacat cacgctgggt
      781 acctggaaga accacggaaa gctcgactcg ctggcgaagg aaggctcgtg taatacagtc
      841 ggcgtgacgc cgttcacggt gccgctgcaa cagggacact ggttctttta cgtcgcggtc
      901 gatccgcttc tgctcggatg cagcgggaac gatccgacgg atgttttctg ccagcgttcc
      961 acttacccga atgcctggtt cggcgatccg aatggaccag tgctaatcaa caccgtcaac
     1021 tagcagtcca ctttgtaacg ggagttagcg gattgcacac aggcgcgcac ttgtagtgag
     1081 gcaagtgcgc gccttccctt ttaaccgcca tcgccaacca acacgaaccc cgcccagtaa
     1141 aagggatgac tggtttcggg attgcgcatt aacttcaacg ccgcctgtcg caacgcgtcc
     1201 gtcttagttg gtttgcttag ctgcggtgcc cggggtgaga aaagagagcg atgaaagctg
     1261 accatcagat cgcgagtgct cgcggattcc actttccatt gactgacaac tgtcgcggga
     1321 acgccggcga taaacatggc ccacgagaag ccgatcacgc cttcacccgc gccgatgcgc
     1381 ccgcgcgcgg tttcacacgc agataacacg gccaattccg ctttgagatc gagttgcatc
     1441 aactcccacg cttcgagtaa gccgtcgtcg tttggtccac cttcggcgag tgtgaggtat
     1501 gaatacatcg gcgaagcgtt gttgagcgtg ccgtgcgtcg tgaagtgcag tatgcctgct
     1561 tggccggctt cgttcttgac gcgatcctcg cgtgcgtctg gaccaacgta gaccttgctg
     1621 cggcttgggc cgtacaagcg cgccaacgct ttcacttctt cagcggcttc ggggagcgga
     1681 tcgaggctgc cgtcacgtaa ggctgaaact cgatcggttt tggcctgttc tgaaacgggg
     1741 ttgccgaacg ctaacaacgt tggcgaagtg cgcggcgctg tttggctaat tcggcgtttg
     1801 gacatttcgc gcagcacggt caacgagggc gcgtaagtga tcgctgcgtc ttcgatcagg
     1861 aaacgtccgc cggtgtctac aagtgcctga aacggcaagt cccaaagatt gctgtcggga
     1921 gcgatcacga cgtttgtttt gccacgaagc tgaacgtgcg cgggtttcag gagtaagtcg
     1981 tagagcttca gcgcggaagt gcgaaagccg aggtcgcgtg aagcgagctg tttgcgaaac
     2041 gactcgatct gcttttcgag ttcggcgcgt ttgataggca acgtgtaaag ctggaccaca
     2101 gctttatcgg ccggtttcgt gattgcaaac agatacgtct gctcttccgt gaccacgaat
     2161 tcaagcaaca cagacgaaga attggggagt aactcggcga gctcctgcgc gttgatgatc
     2221 ggcgcttcac ctcgctgtgt tcttagttcc gggtgcgcgg cgtacaaggc attctgaaac
     2281 gcttcgtaat tgagtctcgc tttgtc
//
LOCUS       DASWTX010000191         3037 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_240240, whole genome shotgun sequence.
ACCESSION   DASWTX010000191 DASWTX010000000
VERSION     DASWTX010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3037)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3037)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3037
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240240"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..370
                     /locus_tag="VGD38_02975"
     CDS             <1..370
                     /locus_tag="VGD38_02975"
                     /inference="COORDINATES: protein motif:HMM:NF024806.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0727005.1"
                     /translation="GIYAEAQQQFEAALKLDRSNSWVYYNLGLLFLEQRNWQQALDNL
                     EASLIGNLKPAWIEAWAHIKRGNAYDAKGERQRAVYEYNKAVASGIDYDNAQAVAKKY
                     LATPYDPKAEATAEANRPAN"
     gene            complement(367..1164)
                     /gene="lpxI"
                     /locus_tag="VGD38_02980"
     CDS             complement(367..1164)
                     /gene="lpxI"
                     /locus_tag="VGD38_02980"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: protein motif:HMM:NF017989.4"
                     /note="LpxI, functionally equivalent to LpxH, replaces it
                     in LPS biosynthesis in a minority of bacteria; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase LpxI"
                     /protein_id="HEY0727006.1"
                     /translation="MKVGLIAGNGKFPFMVVEGARKSGAELVVAAIREETDPEIEKLA
                     DRVKWVGIGQLGRMIRFFKDEGVEKAIMAGQVKHVQIFSRAVPDARMLKVLLKLPRRN
                     TDSLIGAIASELQSEGIELIDSTFFLHESLPQSGTLTRRQPTRNEREDIEYGLEVARE
                     IARLDLGQTIVVRGKACVAIEAMEGTDATILRAGSLVSGRLTVVKLAKPNQDMRFDVP
                     VVGVPTIETMVEAGATCLCITAGKTLMFDRKEMIAAADKQKIAIVAV"
     gene            complement(1161..1955)
                     /gene="lpxA"
                     /locus_tag="VGD38_02985"
     CDS             complement(1161..1955)
                     /gene="lpxA"
                     /locus_tag="VGD38_02985"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: protein motif:HMM:NF003657.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HEY0727007.1"
                     /translation="MSTAAHPATIHPTAVVSAKARIGYDCYVGPYCIVGDEVELGDNV
                     RLESHCVIDGHTWIGADTHIFPFVSIGLASQDLKYKGEPSETRIGARNNIREFVTIHR
                     GTAGGGMLTKVGDDCLIMAQAHVAHDCIIGDGVIMANAATLAGHVVIEDRANVGAYSG
                     IHQFCRVGKEAYIGGYSVVVKDALPFALTVGNHAKCYGLNITGMKRRGYPRETIDALH
                     HAFHLLLSAKLNTSQAVERIREEITDSPEVSYVLRFIEESNRGVTK"
     gene            complement(1957..2412)
                     /gene="fabZ"
                     /locus_tag="VGD38_02990"
     CDS             complement(1957..2412)
                     /gene="fabZ"
                     /locus_tag="VGD38_02990"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: protein motif:HMM:TIGR01750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HEY0727008.1"
                     /translation="METVLDSQAIQQLLPHRYPFLLVDRIVELVPKVRIVGIKQVSIN
                     EPYFQGHFPGAPVMPGVLVVEALAQVGAVLALREIEDRDQKLVLFTGIKEARFRRPVV
                     PGDTLVLEVTALRIGSRVQRMRGEAKVDGQLAADAEIMSIVAPRDTNAI"
     gene            complement(2484..>3037)
                     /locus_tag="VGD38_02995"
     CDS             complement(2484..>3037)
                     /locus_tag="VGD38_02995"
                     /inference="COORDINATES: protein motif:HMM:NF015871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HEY0727009.1"
                     /translation="TATPAPTAPATVALPTSKMAVLYTDMFLDPKTGIAKFNAVVTKL
                     NDEFQKVKDEIQAMQTRAQALETEINKLREAPAGTPIDQRSLQTKIDQLEQLKKDIQR
                     KAEDAQGAYNRRRQELFGPLQDEIGKALEAFAKARGINVIIDAAQVPLLYAADSIDIT
                     RAFITDFNSKNPATASATPAPPK"
BASE COUNT          609 a          894 c          879 g          655 t
ORIGIN      
        1 aggaatttac gcggaggcgc aacaacagtt cgaagcggcg ctgaagctgg atcgttccaa
       61 ctcgtgggtt tattacaacc tcggcctgct ctttcttgaa cagcgcaact ggcagcaggc
      121 gctcgacaat ctcgaagcgt cgctgatcgg aaacctgaaa ccggcatgga tcgaggcgtg
      181 ggcgcatatc aaacgcggta acgcgtacga tgcgaagggt gagcgccaac gcgccgtcta
      241 cgagtacaac aaggcagtgg cttcgggaat cgattacgac aacgcgcagg ctgtagcgaa
      301 gaagtatttg gcgacgcctt acgatccaaa ggcagaagca accgcggaag cgaaccggcc
      361 tgcaaactaa accgcaacga ttgcgatctt ctgcttgtcg gcagccgcaa tcatctcttt
      421 ccgatcgaac atcaaggtct tgccggcggt gatgcataaa cacgtcgccc cggcttcgac
      481 catcgtttca atcgtcggca caccaaccac cggcacatca aaccgcatgt cctgattcgg
      541 ctttgccagt ttcacgactg taagccgtcc cgacaccagc gaacccgcgc gcagtatcgt
      601 agcatcagtg ccttccatcg cttcgatcgc cacgcacgcc ttgccacgca cgacgatcgt
      661 ctggcccagg tcgagccgcg cgatctcgcg cgcgacctcc agaccatatt caatgtcttc
      721 gcgttcgttc ctggttggct ggcgccgtgt cagcgtgccg ctctgcggca aactctcgtg
      781 aagaaagaaa gtcgagtcga tcagttcgat gccttcactc tgcagctccg aagcgatcgc
      841 gccgatcaac gagtcagtgt tccgccgcgg cagtttcaaa agcactttca acatgcgcgc
      901 gtcgggcacg gcacggctga agatctgcac gtgcttcact tgtccggcca tgatcgcttt
      961 ctcgacgcct tcgtccttga agaagcgaat catgcggccg agctgaccga tgcccaccca
     1021 cttcacacga tcggcaagct tctcgatctc cggatctgtc tcttcgcgga tggcggccac
     1081 gacaagctcc gctcccgact tccgcgcgcc ttccaccacc atgaacggaa actttccgtt
     1141 gcccgcgata agtccgactt tcatttggtg acgccgcgat tcgattcttc gatgaaacga
     1201 agcacgtaag aaacttccgg agagtcagtg atctcttcac ggatgcgttc cactgcctgg
     1261 ctggtgttga gttttgcaga gagaagtaga tggaaagcgt gatgcagcgc gtcgatggtc
     1321 tcgcgcggat agccgcggcg cttcatgccg gtgatgttca agccgtagca cttcgcgtga
     1381 ttgccgacgg tcaatgcaaa cggcagcgca tctttgacga ccaccgagta gccgccgatg
     1441 taggcttctt tcccgacgcg gcagaattga tgaataccgg agtaagcgcc gacgttcgca
     1501 cggtcttcaa tcacgacgtg tccggcgagt gtggcggcgt tggccatgat gacgccgtcg
     1561 ccgatgatgc agtcgtgcgc gacgtgcgcc tgcgccatga tcaaacagtc gtcgcctacc
     1621 tttgtaagca tgccgccgcc cgcggtgccg cgatgaatcg tcacaaactc gcggatgttg
     1681 ttgcgcgcgc cgatgcgcgt ttcagaaggt tcgcctttgt atttcaggtc ctgtgaggcg
     1741 aggccgatcg agacaaaagg aaagatgtgt gtgtctgcgc cgatccacgt gtggccgtcg
     1801 atcacgcagt gtgattcgag acgaacgttg tcgccgagct caacttcgtc gccgacgatg
     1861 cagtaaggcc cgacgtaaca gtcgtaaccg atcctggctt tcgcactgac aaccgcggtc
     1921 ggatgaatcg tagccggatg tgcagccgta gacatatcaa atcgcgttcg tatcgcgcgg
     1981 cgcgacaatg ctcataattt ccgcgtctgc cgccagctgg ccatcgacct tggcttcgcc
     2041 gcgcatacgt tgcacgcgcg agccgatacg cagtgccgtc acttcgagca ccagcgtatc
     2101 acctggcaca acgggacggc gaaagcgggc ttctttgatg ccggtgaaaa gcacgagttt
     2161 ctgatcgcga tcctcgatct cgcgcagcgc cagcacggcg ccgacctggg ccaatgcttc
     2221 cacgaccagc acgccgggca tcaccggcgc gcccggaaag tgaccctgaa aatacggttc
     2281 gttaatgctc acctgcttga tgccgacgat gcgtactttc ggcaccagtt cgacgatgcg
     2341 atcgacgagg agaaaaggat agcgatgcgg cagtagttgc tgaattgcct gagagtcgag
     2401 gacagtttcc atggtcaaac aaaaacgcgg caggcgaacc taatggccgc atcgccgcgt
     2461 ttgggatgcc agttaggcgc cgtttatttt ggcggcgccg gcgtggcgga tgcggtcgca
     2521 ggattcttgc tgttgaagtc cgtgatgaat gcgcgcgtga tgtcgatgct gtcggcagcg
     2581 tacaggagcg gcacttgcgc cgcgtcgatg atcacgttga tgccgcgcgc tttggcaaac
     2641 gcttcgagcg ccttgccgat ctcgtcctgc aacgggccga aaagctcctg ccggcggcga
     2701 ttgtaagcgc cctgcgcgtc ttcagctttg cgttggatat ctttcttcag ttgctcgagc
     2761 tgatcgatct tggtttgcag cgatcgttga tcgatcggag ttcctgcggg agcttcccgc
     2821 agcttgttga tttcagtttc caacgcctgc gcccgcgtct gcattgcctg gatctcgtct
     2881 ttgactttct gaaactcgtc gttcagtttc gtcacgacgg cattgaactt ggcgatgccg
     2941 gtctttggat cgagaaacat atccgtgtag agcactgcca tcttgctcgt tggcaaggcc
     3001 acagttgcgg gggcggttgg agcaggtgta gcggtcg
//
LOCUS       DASWTX010000192         3322 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_306332, whole genome shotgun sequence.
ACCESSION   DASWTX010000192 DASWTX010000000
VERSION     DASWTX010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3322)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3322)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3322
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306332"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..630)
                     /locus_tag="VGD38_03000"
     CDS             complement(<1..630)
                     /locus_tag="VGD38_03000"
                     /inference="COORDINATES: protein motif:HMM:NF025875.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HEY0727010.1"
                     /translation="MLTVLVSLAAVEPQTRSPSRRRPARATQQKPRINYAEFSHTTHV
                     TWQKLACDSCHKFPSANWKEVRKGDDAYADIAEFPEHSTCLNCHRAQFFARELPAPAI
                     CSNCHVAASPKNTARFLFPSLGDVTDASRPRRDAVSEFAVHFPHETHLEVVSRNTRAL
                     GPWFAKASFTTQQQKQPPANCGVCHQTYQPQGKSDEEYVTNAPKELGDAF"
     gene            complement(682..2871)
                     /locus_tag="VGD38_03005"
     CDS             complement(682..2871)
                     /locus_tag="VGD38_03005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727011.1"
                     /translation="MNITTRITGLLLVLIAAVNLIAAQQPSPSPAPKTSTTSTAPDAP
                     VESGENAGDYTVISSVEFGYRGLSVDGDLNKYKSDLNYRTGPRLFDSTFLLKSRDGKG
                     ALFETLLASSTGWGADPQGNLRVSVEQPEWYRFDATYRRFKYFRFLNTFANPNWVFSP
                     ATFSVPPNPVTGEHGYDTRIHLGDFDLSILPKHRRIRFNVGYSPERYSGPAFTNYHAG
                     GNEFIMLSELRSRANDFRVGADGRVGPLNFSFLQGFRRFRDDSVIDLATGINRNPAAA
                     QLTSFNRDEPARGSVDYTRFSLQTLVAKRLDITGRIIYSKAEQNFSFIESFTGRNWNP
                     RITGFPPSPPGATPNILNLGRYNLVGDTERPNWLGDIGLTLLATDKFRISNTFRYETF
                     EITGSALFSDFFSLTRGTRTDTIGFSNRDVHTRTDYRKVQNTIEGDYQFNRDYSVHLG
                     YRYARRRVEEEISGFNLGANAPALLVPSSFLEHNNTHAIIGGFKARPYSNWSLYFDAE
                     HGTADNVFTRIGNYEYTNIRAKSKYKPTSRLSFDLAFVAKNNSNPSEIAGVSLEDFGV
                     SVKSKLFSSAIDWTATSRLSISTGYNYHWINSHAILDYFFNSVAHPLGNSLYIVRNNF
                     FYVESVARIAPRATLFTAYRINKDNGQGNRIADPTGRPGTLIASYPMSCQSPEARLAI
                     KLHHRLDWNVGYQYYNYNESTIVGPRPQNYHAHLPYTSLRFYFGRRE"
     gene            complement(2880..>3322)
                     /locus_tag="VGD38_03010"
     CDS             complement(2880..>3322)
                     /locus_tag="VGD38_03010"
                     /inference="COORDINATES: protein motif:HMM:NF021235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HEY0727012.1"
                     /translation="CLSCHSETKHQFNLPFHHKVLEGAMKCSDCHNPHGGFELKQTRL
                     ATGADAACIKCHADKQGPFVYEHAPVKVDGCVSCHTPHGSSNPRMLITSRVAQLCLTC
                     HSTAHGVGAEEPAGPQHNLNAQYANCTNCHIKIHGSRTSPVFFR"
BASE COUNT          648 a          863 c         1049 g          762 t
ORIGIN      
        1 gaacgcatcg cccaactctt tcggcgcgtt ggtaacgtac tcttcgtctg actttccctg
       61 cggttgatac gtttggtggc aaacgccgca gttcgcgggt ggctgcttct gttgctgcgt
      121 tgtaaacgac gcttttgcga accatggtcc aagagcgcgc gtgttgcggc tgactacctc
      181 gagatgagtt tcatgaggga agtgcacggc aaactcgctg acggcatctc gccgcggtcg
      241 tgaagcatcg gtcacgtctc ccagactggg aaacaggaat cgcgccgtgt tcttcggcga
      301 tgcggcaacg tggcaattcg aacagattgc gggcgccggg agttcacgcg cgaagaactg
      361 cgcgcggtga cagttgagac acgtcgagtg ttccggaaac tcggcgatgt ccgcgtacgc
      421 atcatcgccc ttgcgaactt ctttccagtt agcggaagga aacttatgac acgaatcgca
      481 cgccagcttt tgccaggtca catgggtcgt atgagaaaac tcggcgtagt tgatgcgtgg
      541 cttttgctgt gttgcccgcg cagggcggcg gcgtgacggg ctacgcgttt gcggttctac
      601 ggccgcaagc gacacgagta ccgttagcat gaacgaaccc aagccaaccc ccagaattat
      661 tccccgtcta agcacccaaa cctattcccg gcgaccgaag taaaaacgta acgacgtata
      721 aggcagatgt gcgtgatagt tctgcggccg tggaccaacg atcgtgcttt cgttgtagtt
      781 gtaatactgg tagccgacgt tccaatcgag ccggtggtgc agcttgatcg ccagccgcgc
      841 ttcaggcgac tggcaactca tcgggtacga agcgatcaac gttcccggcc gtcctgtcgg
      901 atcggcaatt cgattgccct ggccgttgtc cttattgatc cggtacgcag taaacaacgt
      961 cgcgcgcgga gcaatcctgg ctaccgactc gacgtaaaag aaattgttcc gcacgatgta
     1021 caggctattt cccagcggat gggccacgct attgaagaag tagtcgagga tcgcgtggct
     1081 gtttatccag tggtagttgt aaccggtgct gatcgacagc ctggaggtcg cggtccagtc
     1141 gatggctgaa ctaaagagct tcgacttcac cgagacgccg aagtcttcca aagagactcc
     1201 cgcgatttcc gaagggttgg agttgttctt cgccacaaac gcgaggtcga aagacaagcg
     1261 cgacgttggc ttgtacttac tcttcgcccg aatgtttgtg tactcgtaat tgccgatgcg
     1321 cgtaaagacg ttgtcggcag tgccgtgctc ggcgtcgaag tacaaggacc agttgctgta
     1381 cggccgtgcc ttgaagccgc cgatgatggc gtgggtgttg ttgtgctcca ggaagctgct
     1441 tggcacaagc agcgccggag cgttggcgcc gagattgaaa ccgctgatct cttcttcgac
     1501 tcttcgtctc gcgtaacggt agccgagatg gactgagtag tcgcggttga actggtagtc
     1561 gccttcgatg gtgttctgaa ctttgcggta gtcggtgcgc gtgtgcacgt cgcgattgct
     1621 gaaaccgatc gtgtcggttc gcgtgccgcg tgtgagcgag aagaaatcgc tgaacaacgc
     1681 ggagccggtt atttcaaacg tttcatacct gaacgtgttt gagatgcgga acttgtcggt
     1741 tgcgagaagg gttagaccga tatcgcctaa ccagttcgga cgttccgtgt ctccgacgag
     1801 gttgtaccgg cccaggttga gaatgtttgg cgtcgcgccg ggcgggctcg gtggaaatcc
     1861 ggtgatgcgc gggttccagt tgcggccggt aaagctctcg ataaacgaga agttttgttc
     1921 ggccttgctg tagatgatgc ggccggtgat gtcgagtcgc ttggcgacga gcgtttgcag
     1981 actgaaacga gtgtagtcaa cgctgccgcg cgcgggttcg tcgcgattga agctggtcag
     2041 ttgtgcggcc gccggattgc ggttgatgcc ggtcgcgaga tcgatcacgc tgtcgtcgcg
     2101 aaaacgtcga aagccctgta ggaaagagaa gtttaatggt ccgactctgc cgtcggcgcc
     2161 gacgcggaaa tcgttggccc gcgatctaag ctctgaaagc atgatgaatt cattgccgcc
     2221 cgcgtggtag ttcgtgaatg cggggccgct gtaacgttcc ggtgaataac cgacgttgaa
     2281 gcgaatgcgt cggtgcttcg gcaggatgct gaggtcgaag tcgccgagat gtattcgcgt
     2341 gtcgtagccg tgctcgccgg tcacgggatt aggcggcacg ctgaaggttg ccgggctgaa
     2401 cacccagttc ggattcgcaa acgtgttcag gaagcggaag tatttgaagc ggcgataagt
     2461 cgcgtcgaag cgataccact ccggttgttc gacactcacg cgcaagttgc cttgcggatc
     2521 ggctccccat ccggtcgagc tggcgaggag cgtctcgaac agagcgcctt tgccgtctct
     2581 cgatttcagc aggaatgtac tgtcgaagag acgcgggccg gtgcggtagt tgagatcgct
     2641 cttgtacttg ttcaggtcgc cgtcgacgct caagccgcgg tagccaaact ctacgctgga
     2701 aatgacagtg tagtcgccgg cgttctcgcc tgattccacc ggcgcgtcgg gcgccgtaga
     2761 cgtcgtcgac gtttttggtg caggtgacgg agatggttgt tgcgcagcga tgagattcac
     2821 agctgcgatt aacaccagta gtagtcccgt aatgcgggtc gtgatgttca tggcgtttct
     2881 catcggaaga agaccgggct agtgcgcgat ccgtggatct tgatgtgaca gttcgtgcag
     2941 ttcgcgtatt gcgcgttcag gttgtgctgt ggaccagcag gttcttctgc gccgaccccg
     3001 tgcgccgtgc tgtgacacgt tagacagagc tgggccacgc ggctggtaat caacatgcgc
     3061 ggattagacg aaccgtgcgg agtgtgacag gaaacacagc catccacttt tacgggcgcg
     3121 tgctcgtaga caaacggtcc ctgcttgtcg gcgtgacact tgatgcacgc cgcgtcggcg
     3181 ccggtggcga gtcttgtttg cttgagctca aaaccgccgt gtggattatg gcagtcgctg
     3241 cacttcatcg cgccttcgag caccttgtga tggaacggca aattgaactg gtgcttggtc
     3301 tcgctgtggc agctcaggca ga
//
LOCUS       DASWTX010000193         2404 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_240258, whole genome shotgun sequence.
ACCESSION   DASWTX010000193 DASWTX010000000
VERSION     DASWTX010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2404)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2404
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240258"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1747
                     /locus_tag="VGD38_03015"
     CDS             <1..1747
                     /locus_tag="VGD38_03015"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HEY0727013.1"
                     /translation="TDIHLRDGDGLSLLNHIRENSLPLAVVIVTGLGDEETAVAALKA
                     RADDYVVKRKVYLDKLPVILESAFNHYRADAGRREHPLKVLYLEDNPLDIDTTRRHFA
                     VHADHIQLEIVTSVSEMLWRLSDGVERYQVVLMDFQVAEPSALQVLRELSLRDKQETP
                     IVLVCNETEEELARQGLKLGASSCLVKRPGYLFQLPWELEQAHARADLHRREAALHAS
                     QESLKTALAEVQRLKNQLHEENIYLQEEIRVASNFGQIIGRSEPLRRVLHQAEQVAPL
                     NTTVSIFGETGTGKELLAHAIHQSSGRHKHPLVKVNCAALPGTLIESELFGHEKGAFT
                     GADVKRIGRFEIANGGTLLLDEVGELPLDLQAKLLRVLEEGELERVGGSHTIKVDVRV
                     IAATNRNLEDAVRKGDFRSDLYYRLSIFPITLPPLRERKEDIPVLVTHLVKQLSQKLG
                     KTIDAIPQETMAKLRNYPWPGNVRELRNVLERAVIITQGSKLRLIDDLDSQALQLDLQ
                     QQSAAADPFAASMPATETFEQTEYNVIVRTLKNVHWKLEGPGGAAELLNLHPSTLRSK
                     MRKLGIERPRYKTLP"
     gene            complement(1785..>2404)
                     /locus_tag="VGD38_03020"
     CDS             complement(1785..>2404)
                     /locus_tag="VGD38_03020"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEY0727014.1"
                     /translation="RYEFFGGYSALFVDNLAGDTGSPAVDDVLGEKQTLRGFNLAAGF
                     NFHKYVGAKFDYSLHLREDNFSRPAGSGTVDSTLQNFLGGIQRKNNSEDGPTFKPFGH
                     ALFGVAVHKVDVDSPNLPAVFGISDFSTNETSFSMAFGGGLDIKLNDRFDLRVVQIDW
                     NIINRGDQQTGIVLAPTPFQTVGQPFVIPGTRQDNLRLGVGIVIH"
BASE COUNT          551 a          667 c          708 g          478 t
ORIGIN      
        1 cacagacatt cacttgcgcg atggcgatgg cctgtcgctg ttgaaccaca tacgcgaaaa
       61 ctcattgccg cttgcggtcg tgatcgtcac cggcctcggc gacgaagaga ccgcggttgc
      121 cgcgctgaaa gcccgcgccg acgattatgt ggtcaaacgt aaggtatatc tcgacaagct
      181 cccggtcata ctcgaaagcg cattcaatca ctaccgtgcc gacgccgggc gccgggaaca
      241 tccgctgaaa gttctctacc tggaagacaa cccgttggac atcgacacga ctcgccgcca
      301 cttcgcggta cacgccgatc atattcagtt ggaaatcgtc acgtcggtgt ccgaaatgct
      361 ttggcgtttg agcgatggcg tcgagcgtta ccaggtggtg ttaatggact ttcaggtggc
      421 ggaaccaagc gcccttcagg tcttgcggga attgagtttg agagacaaac aagagactcc
      481 gatcgtgctg gtttgtaatg agaccgaaga agaactcgcg cggcagggac tgaagctcgg
      541 cgcttcgagt tgtctcgtaa aacgtcccgg ttatctcttt caacttccgt gggagttgga
      601 acaggcgcac gcgcgcgctg atctgcaccg ccgcgaagca gcgttgcacg cgagccagga
      661 gtcgttgaag accgcgctcg cggaagtgca gcgattaaag aatcaactcc acgaagagaa
      721 catctacctg caggaagaga ttcgcgtcgc cagcaacttc ggccagatta tcgggcggag
      781 tgagccgctg agacgcgtgc tgcatcaggc ggaacaggtc gccccactca acaccacggt
      841 ttcgattttc ggcgagaccg gaaccggcaa ggaactgctg gcccatgcga tccatcagtc
      901 gagcggccgg cacaaacatc cgttagtcaa agtgaattgt gccgcgctgc cgggcacgct
      961 cattgagagc gagttgtttg gccacgagaa aggcgctttc actggagcgg acgtgaaacg
     1021 catcgggcgt ttcgagatcg ccaacggcgg cacgctgctg ctcgacgaag tcggcgagct
     1081 tcccttggac ttgcaggcga aactgttgcg cgtgctcgaa gaaggtgagc ttgaaagagt
     1141 cggcggcagt cacacgatca aggttgacgt acgcgtgatc gctgcgacga atcgcaatct
     1201 cgaggacgcc gttcgcaagg gcgactttcg ttcggatctt tattaccggt tgagcatttt
     1261 tccgatcacg ctgccgccgt tgcgagagcg gaaggaagac ataccggtac tcgtcacgca
     1321 tctcgtaaag cagttgagtc aaaagctcgg caagaccatc gacgcgattc cgcaagagac
     1381 gatggccaaa ctgcgaaact atccgtggcc gggtaacgtg cgtgaattga gaaacgtgct
     1441 cgaacgagcg gtgatcatca cgcagggatc gaaacttcgt ctcatcgacg atctcgattc
     1501 gcaggccttg cagttggacc ttcagcagca aagcgctgcg gccgatccgt ttgccgcctc
     1561 catgcccgct acggaaacgt tcgagcagac cgagtacaac gtgatcgtgc gcactctaaa
     1621 aaatgttcac tggaaactcg aaggccccgg cggcgccgcg gaattactga accttcatcc
     1681 cagcacgctg cgctcgaaga tgcgcaagct gggcatcgaa cggccgcgat ataaaacact
     1741 accttgacgg ggaacagggg gtgaggccct gcattgaaag atcgttagtg gatgacgatg
     1801 ccgacaccca accgcagatt gtcctgacgc gtgcccggta tgacgaacgg ttgcccaact
     1861 gtttgaaacg gagtgggcgc gagcacgatt cccgtttgct gatcgccgcg attgatgatg
     1921 ttccagtcga tctgcacgac gcgcagatcg aaacggtcgt tcagcttgat gtcgaggccg
     1981 ccgccgaacg ccatcgaaaa gctcgtctcg tttgtagaga agtcgctgat gccgaagacc
     2041 gcgggtaagt ttgggctatc gacgtcgacc ttgtgcacgg ccacgccgaa aagagcgtgt
     2101 ccaaacggct tgaaggttgg accatcctcg gaattgtttt ttctctggat gccgccgagg
     2161 aagttttgca gcgtcgagtc tacagtgccg cttcccgcgg gacggctgaa gttgtcttca
     2221 cgcaggtgga gtgagtaatc aaacttggcg ccgacgtact tgtggaaatt gaaaccggcc
     2281 gcaagattga aaccgcgcag ggtctgcttc tcgcccagca cgtcatcgac tgccggactt
     2341 cccgtgtctc ccgcgaggtt gtcaacaaac aaggcggaat acccgccaaa aaattcataa
     2401 cgct
//
LOCUS       DASWTX010000194         1700 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_349850, whole genome shotgun sequence.
ACCESSION   DASWTX010000194 DASWTX010000000
VERSION     DASWTX010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349850"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(498..881)
                     /locus_tag="VGD38_03025"
     CDS             complement(498..881)
                     /locus_tag="VGD38_03025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727015.1"
                     /translation="MSHMIAFDVFLNRKKLVRAGVGSDGVLTAITTWVRRRAAESDGK
                     RPRWDRDLSFNLSGYRSNDGEVGEHLTWEDKRLKPGDVLTIKVITAARVDEPKRRITE
                     DPKLVERSQKRYYQRLKRKFEKKKR"
     gene            complement(965..>1700)
                     /locus_tag="VGD38_03030"
     CDS             complement(965..>1700)
                     /locus_tag="VGD38_03030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727016.1"
                     /translation="EANAGHNGGEDADPAAGYPVSFNMNFFRPSFFALEAEPELTLVV
                     KEFDFTVLDLQTDGMGKGEYEPSRFLSGWKTGNQFGYSAILRDPNNRPDISFLPASKL
                     ERIWRWNLARGEVQRELGESVFVPRIMFFKEEGSVTPAVVWSDGIPTAFPNDIDSVVI
                     YLKDLAPRTLFRRKEIIASARWEVIRPLVERFGRSQGDAVVSNYVAPPKEVVSFLRSL
                     PPRSHDLVGVSADSVLDAELVAQYAA"
BASE COUNT          382 a          496 c          442 g          380 t
ORIGIN      
        1 gatctccatc ggaaacggca cacgtcgctc ccggcctcgc agcttctcta catcataaat
       61 gcgaagcaga tcgtcccacg cattcagtgc aatgagtgcc ttgccgctgc accaaggatg
      121 atatctgcgc ggcaagtagt agcctctacc ccttcgcgat ttcgcgatat acgggtgtcg
      181 ggccgtcgta tcgtcgccgt tttcgagcaa cgcgatactc catccttcgg cacccatgtg
      241 ccactcgagc ggatcgtaga agcgagccgc ccatgtagat cccgccgatg agaagacgcg
      301 ctctgtgtgc cactctgctc gagttagctg ctcgattacg cggcctacgg ttaatcgtac
      361 cactgagttt aactcggctt ataacacgat gccgctgagc cgctacggca gacaagtttc
      421 atttcagcac gatgctcgcc gtcggctcaa gcgcgggtta aaccggcagt ctgggagcag
      481 cacccaattg aatgaagtca tctctttttc ttctcgaact ttcgtttcag acgctggtaa
      541 taacgttttt gggagcgctc cacgagtttc gggtcttcgg taatacgacg ttttggttca
      601 tcaactcggg cggcggtgat cactttgatc gtgagaacat ctccgggttt tagccgttta
      661 tcttcccacg tgaggtgttc gcctacttcg ccatcgtttg atcgataccc actcaggtta
      721 aaactgagat cacgatccca ccgtgggcgc ttcccgtcgg actcagcggc acggcggcgg
      781 acccaagtcg taatcgctgt gagcacgccg tcagagccaa caccggcccg gacaagcttc
      841 ttgcggttga gaaatacatc aaaggcaatc atatggctca taacccgaga tcgctttaac
      901 gacacgacga tacggtgaac gtagaacaaa tttatgctga tcgcgcgctc gctgcatttg
      961 cttgttatgc cgcatactgc gcaaccagtt cagcatccaa gaccgagtct gcgctaacgc
     1021 cgactaaatc gtgtgaccgc ggaggtaggc ttcgcaagaa ggaaacgact tctttgggcg
     1081 gtgcgacgta gttgctcaca acggcgtcgc cttgcgagcg gccaaagcgc tcaacgagcg
     1141 gacgaatcac ctcccagcgc gcagaagcaa tgatctcttt gcgacgaaac agcgtccttg
     1201 gcgccaaatc tttcagatag atcactacag aatcgatgtc gtttggaaac gccgtcggta
     1261 tgccgtccga ccagacgact gcgggagtta ccgagccctc ctctttgaag aacatgatcc
     1321 tgggcacaaa aaccgattct ccaagctcgc gctgaacttc gccgcgtgca aggttccaac
     1381 gccaaattcg ctccagcttg ctggctggca ggaatgaaat gtcgggccgg ttattcggat
     1441 cgcggagaat tgccgagtag ccaaactggt tgcctgtctt ccacccggat aggaagcggg
     1501 acggctcgta ctcgccttta cccataccat ctgtttgcag atcaagcacc gtgaaatcga
     1561 actctttaac gacaagcgtg agctccggct ccgcctccaa agcaaagaat gacggccgaa
     1621 agaagttcat gttgaaagac accgggtagc cggcagccgg atcggcatcc tcgcccccat
     1681 tgtgaccggc atttgcttcg
//
LOCUS       DASWTX010000195         2712 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_306362, whole genome shotgun sequence.
ACCESSION   DASWTX010000195 DASWTX010000000
VERSION     DASWTX010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2712
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306362"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            126..1103
                     /locus_tag="VGD38_03035"
     CDS             126..1103
                     /locus_tag="VGD38_03035"
                     /inference="COORDINATES: protein motif:HMM:NF025523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YndJ family protein"
                     /protein_id="HEY0727017.1"
                     /translation="MSSAIANVHDSQWLRVFARRSAAAGAAGWLLLLLTTTSDSQETE
                     LIHKIVFFAVLVIVPLGLSLVTAGEQRVSALLYRAAVLVQPVAAVIAIASFFFEKGPL
                     SASLSAVWLVVSGIVALLGLSRFTARGFYPLHELSVDAGLLYLPVAGGWLIVYRLGVQ
                     PFDYGEMIILLTVVHFHFAGFAAPIIAGLTGKRLATTGSLPAKVYAFIVFAIVGAMPL
                     VAAGITFSPAIGLVGTILLSSGLVMLAVLTIGRVVPVISSVSARLLLSIAALSSCAAM
                     VLACLYAYSLVAQILILRIPTMAMTHGLLNAFGFATCSLLAWSTVNAKS"
     gene            complement(1100..1831)
                     /locus_tag="VGD38_03040"
     CDS             complement(1100..1831)
                     /locus_tag="VGD38_03040"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0727018.1"
                     /translation="MKEARWKALIADDEPAARRGVRQLLAAFPEFTVAGECRNGAEVL
                     AALNTSPPDVVFLDIQMPGIDGFEVIKQRTVERMPAVVFLTAFDQFAIRAFETEALDY
                     LVKPVSEARFAATIKRVEKRLQSSAKPPRQETIVVTTARGAAVLHLNEIDWIEAAGNY
                     TQLWVGTRSYFLRESLQLLEERVQTQGFIRAHRSALVRLDAVRELRRTRTGALVAILA
                     SGVRVPISRRRSAAFTAALRQLAAT"
     gene            complement(1907..>2712)
                     /locus_tag="VGD38_03045"
     CDS             complement(1907..>2712)
                     /locus_tag="VGD38_03045"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEY0727019.1"
                     /translation="HEAMQNGMGQFWRMVGVEWLGWIFTTLPFGVAVYLCVVGIEHAT
                     RYFVEAREREVQVARLSEQLSSARFAALQAQLNPHFLFNTLNTIAVLVRDNDQRGAVR
                     IVEHLSELLRRTLTRHRANEVTLGEELELVRQYVAIEQARFSDRLRPEFSIPDSLLSA
                     ALPSFALQHLVENAIRHGIARHPDAGLLLITAEHTGDVLQITVGDDGVGIDPEAPTPA
                     GHGIENTRERLRALYGANASLELARRPEGGTIATLRVPYRELGPEPITS"
BASE COUNT          478 a          741 c          872 g          621 t
ORIGIN      
        1 acgaaaatcg acagaatcta tcttgccggg aacagggttt acatcctcaa cgtttttgta
       61 cctaaggact ggttttgcaa ggtcccgtcg accgtaaaga tccttggtac cttcgagata
      121 acagaatgag tagcgcgata gctaacgtcc acgactcaca atggcttcgt gtgtttgcgc
      181 ggcgaagcgc cgcggcgggc gccgctggat ggctgttgct gttgttgacg acgacgtctg
      241 actcgcagga gacggagctg attcacaaga tcgtgttctt tgcggtgctc gtgatcgtgc
      301 cgctcggact ttcgctggtc acggcagggg agcagagagt aagcgcgctt ctgtatcgtg
      361 cggccgtgtt ggtccaaccg gttgcggccg tgatcgcgat cgcgtcgttc tttttcgaga
      421 agggtccgtt gtctgcgtcg ctttcggcag tgtggttggt tgtgagcggg atcgtggcgt
      481 tgcttggact gagccggttc acggcgcgcg gtttttatcc gctgcacgag ttgagcgtgg
      541 atgccggttt gttgtatctg ccggtagcgg gcgggtggct gatcgtttat cgcctgggcg
      601 tgcagccgtt tgattacggc gagatgataa tcctgctcac ggtggtccac tttcacttcg
      661 ccgggtttgc ggcgccgatc attgccggac taaccgggaa gaggcttgcg acgaccgggt
      721 ctttgccggc gaaagtgtac gcctttatcg tctttgcgat tgtcggggcg atgccgcttg
      781 tcgctgcggg aattacgttt tcaccggcga taggtttggt cggaacgatc ttgctgtcgt
      841 cgggtttggt gatgctggct gtgctcacga tcggcagggt ggtgccggtt atatcttcgg
      901 tgagtgcgcg actgttgctc tccatcgcgg cgttgtcgag ctgtgcggca atggtgctcg
      961 cgtgtctcta cgcgtacagt ctggtggcgc agatcttgat cctgcggatt cccacaatgg
     1021 cgatgactca cgggttgctg aatgctttcg ggtttgcgac gtgcagtctg cttgcctggt
     1081 ctacggtcaa cgcaaaaagt taagtagcgg cgagttgtcg caacgctgcg gtgaacgccg
     1141 cactgcggcg tcgtgaaatc ggaacgcgca cgccgctggc gagtatcgcg acgagtgcgc
     1201 cggtgcgagt gcgtctgagc tcacgcacgg cgtcgagtcg aaccaacgcg ctgcgatgtg
     1261 cgcgaatgaa accctgggtc tgcacgcgtt cttcgagcag ttgtagtgat tcgcgcagga
     1321 agtagctgcg agtgccgacc cagagttgcg tgtagtttcc ggctgcttcg atccagtcga
     1381 tttcgttgag gtgcaacact gcggcgccac gcgcggtcgt gacgacgatc gtttcctgtc
     1441 gcggcggttt tgcgctcgac tgcaggcgct tttcgacacg ctttattgtc gccgcaaaac
     1501 gcgcttcgct aacgggcttg acgagataat cgagtgcttc ggtttcgaac gcgcgaatcg
     1561 caaactgatc gaacgcggtg agaaacacga ccgccggcat gcgctcgacc gtgcgttgtt
     1621 tgatcacttc gaagccgtcg atgcccggca tttggatgtc gagaaagacg acgtcgggcg
     1681 gagatgtgtt gagcgcggcg aggacttcag cgccgttgcg gcattctccg gcaacggtaa
     1741 attccggaaa cgcggcgagc agttgacgca cgccgcggcg cgcggcgggt tcgtcgtcgg
     1801 cgatcaacgc tttccatcta gcttctttca ctgctcacct cggcaaccta aagcttgaac
     1861 tcgaaaacga agctctgagt tcaggactcc gttttgagtt caagctttag cttgtgatcg
     1921 gctcaggacc taactcgcga tacggcacac gcagcgtggc gattgtaccg ccttccggac
     1981 ggcgcgcgag ttcgagtgac gcgtttgcgc cgtagagcgc gcgcaggcgt tcgcgtgtgt
     2041 tctcgatgcc atgacccgca ggcgtgggcg cctcgggatc gataccgacg ccgtcgtcgc
     2101 caaccgtgat ctgcaagacg tcgccggtgt gttcggcagt gatgagcagc agaccggcgt
     2161 ccggatgtcg cgcgatgccg tgacgaatcg cgttttcgac caggtgttgc agcgcaaaac
     2221 tcggcaacgc cgcggataac agcgagtcgg gaatgctgaa ttcgggccgc aggcgatcgg
     2281 aaaaccgagc ctgttcgatc gcgacgtact gccggaccag ttcgagttct tcgccaagcg
     2341 tcacttcgtt ggcgcgatgg cgcgtgagcg tgcgtcgcag cagttcgctc aagtgttcga
     2401 cgatgcgcac cgcgcctcgc tggtcgttgt cgcgcacgag caccgcgatc gtgttcagcg
     2461 tgttgaaaag aaagtgtgga ttgagttgcg cctgcagcgc agcaaaacgc gcgctcgaga
     2521 gttgttctga gagccgggcg acctgcactt cacgctcacg cgcttcgacg aagtaacgcg
     2581 tcgcatgttc gattcccacc acgcacagat aaacagcgac gccgaacggc agcgttgtaa
     2641 agatccagcc cagccattca acaccgacca ttcgccaaaa ctggcccatg ccattctgca
     2701 tcgcttcgtg ca
//
LOCUS       DASWTX010000196         3361 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_306373, whole genome shotgun sequence.
ACCESSION   DASWTX010000196 DASWTX010000000
VERSION     DASWTX010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3361)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3361)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3361
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306373"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..753
                     /locus_tag="VGD38_03050"
     CDS             <1..753
                     /locus_tag="VGD38_03050"
                     /inference="COORDINATES: protein motif:HMM:NF005451.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HEY0727020.1"
                     /translation="IMNVREVVSPEEWQVRVDLAAAYRLVADYGWDDLVFTHISARVP
                     GPEHHFLINPYGMMFEEITASSLVKVDLEGRIVMESDYHINPAGFTIHSAVHAAREDA
                     LCVMHLHTDCGIAVSAQKEGLLPISQQSLFVLASLGYHDYEGLALNDEEKPRLVADLG
                     KKTFLILRNHGLLTVGQTVADAFLSMFLLERACRIQILAQSGDGKLIPISDQILAQIP
                     AQEAVVTKGGPGKLVWPGLLRKLDRMGANYGD"
     gene            complement(750..>3361)
                     /locus_tag="VGD38_03055"
     CDS             complement(750..>3361)
                     /locus_tag="VGD38_03055"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY0727021.1"
                     /translation="RQFADLVIANVNGAPIRLRDVGRVEDGTKEQRSFSRLNGVPTVT
                     LDIRRQSGANTVEVINGLKEALPRVSGQLPEDIKLEVIRDQSRYIEAALHEIQTHLIL
                     GSILASLVVLIFMRSWRSTLIAAVAIPCSVISTFGMMRALDFTLNSVTMLALVLMVGV
                     VIDDAIVVLENIFRFIEEKRIEAKEAAREATKDIGLAVLATTLSLVVIFLPVSFMSSI
                     SGRFLYQFGITAAVAILVSLLVSFTLTPMMSSRLIRVSDAKGGHDEPASRKGFYRWID
                     AGYSHLLAFAMRHRMAVALLSLAVVLTSIPLYRAVKQEFIPTNVDEAEFEVNVNGPEG
                     TNLAVMNEVITAMEKDILETPGVRLVLSSAGGGFLGGVNQGGAYVRIAPHEERTLSFS
                     KLWAETKKGNPLNAFRGNYTQQDVMQEVRRRMQKYAPMRTGVRNGQSFNFGAGGRTDI
                     DFVFRGPDIVALAGYADELVERSEKLGGIVDADTTLKLNKPELRVVIDRDRAADLGVS
                     TADIATSLRLMVGGEEEASRFRDESVNEDYDVQLRLTEADRTDVGTISRLYVPSTRAG
                     ASPGAASPSAGGPTSSRNGLVRLDNVVRITRDTSPSRIDRLDRERQVSVRASVAPGYA
                     LADRIEALRQTVGEMNLPTAYTTTVSGRARELERTFTEFIWAFILSIIFMYMILASQF
                     ESVTHPLTILLSLPLSVPFALLSLWGTGDTLNLYSALGVLVLFGVVKKNAILQIDHMN
                     NLREKGMERFEAIMQGNRDRLRPILMTTLALVAGMLPLALGTGPGAEERRSIAIVVIG
                     GQSLSLLLTLIATPVVYSLLDDLKATSRVRRFAETTSGVWQGIVERLKRPRRRRASKA
                     AAEQTDVADAAGD"
BASE COUNT          727 a         1031 c          947 g          656 t
ORIGIN      
        1 attatgaacg tgcgtgaagt tgtttctccc gaagaatggc aagtgcgcgt cgatctggcg
       61 gctgcttatc gtctcgtagc ggattacggt tgggacgatc tcgtcttcac acacatctcg
      121 gcgcgagtac ccggtccgga acatcatttc ctgatcaatc cgtacgggat gatgtttgaa
      181 gagatcactg cgtcgagttt ggtgaaggtc gatctcgaag ggcggatcgt gatggagtct
      241 gactatcaca tcaaccccgc aggcttcacg attcacagcg ccgtgcacgc cgcgcgcgaa
      301 gacgcgttgt gcgtgatgca cctgcacacc gactgcggca tcgccgtgtc cgcgcagaag
      361 gaaggtttgt taccgatctc gcagcagtcg ttgtttgtgc tggcctcgct tggttatcac
      421 gactacgaag ggctcgcttt gaacgacgaa gagaagccgc gtctcgtggc agacctcggc
      481 aagaagacgt ttctcattct gcggaatcac ggtttgttga cggtgggcca aacggtggcg
      541 gacgcgtttc tctcgatgtt cctgctcgag cgcgcgtgcc gcattcagat cctcgcgcaa
      601 tcaggcgacg gcaagttgat cccaatctcc gatcaaatcc tcgcccaaat tcccgcacag
      661 gaagctgtcg taacgaaagg tggaccaggc aaattagtct ggcccggatt gttgaggaag
      721 ctggatcgaa tgggcgcgaa ctacggcgac taatcgcccg cagcgtctgc aacgtccgtc
      781 tgttcggcag cagctttcga agctcgccgg cggcgtggcc gcttgagccg ctcaacgata
      841 ccctgccaca cgccgctcgt cgtttccgca aagcggcgca cacgcgaagt cgctttcaaa
      901 tcgtcaagca gtgaatagac caccggagtc gcgatcagcg tcagcaacaa cgacaacgac
      961 tgtccaccga taaccacgat cgcgatcgaa cgccgctctt cagcacccgg accggttccc
     1021 agcgcgagcg gcaacatgcc cgcgaccaac gcaagcgtcg tcatcagaat cgggcgcaaa
     1081 cgatcgcgat tgccctgcat gatcgcttcg aagcgttcca ttcccttctc acgcaggttg
     1141 ttcatgtgat cgatctgcag aatcgcgttc ttcttcacca ccccaaacaa gacgagcaca
     1201 ccgagcgccg aataaagatt cagcgtgtct ccagtgcccc acaacgagag caacgcaaac
     1261 ggcaccgaca gcggcaggct cagcagaatc gtgagcgggt gcgtgacact ttcaaactgc
     1321 gacgccagga tcatgtacat gaaaatgatc gacaggatga atgcccagat gaactccgta
     1381 aacgttcgct ccagctcgcg cgcgcggccc gaaaccgtcg tcgtgtaagc cgtcggcaga
     1441 ttcatctcgc cgactgtctg gcgcaaagcc tcgatacgat cggcaagcgc ataacccggc
     1501 gcgactgatg cacgcactga aacctgccgc tcgcgatcga gacgatcgat tcgcgacggg
     1561 ctcgtatcgc gcgtgatccg cacgacgttg tcgagccgga ccagtccatt gcgcgaagac
     1621 gttggtccac cagcggacgg cgatgccgcg cccggtgacg cgccggcgcg cgtagacgga
     1681 acgtacaagc ggctgatcgt tccgacgtcg gtccggtcgg cttcagtcag acgcaactgc
     1741 acatcgtagt cttcgttgac cgactcatcc ctgaagcgcg atgcctcttc ctcgccgccg
     1801 accatcaaac gcaaactcgt ggcgatgtca gcggtgctca cgccgagatc cgcagcacga
     1861 tcgcgatcga tcacgacgcg caactcgggc ttgttaagtt tcagcgtcgt gtccgcgtcg
     1921 acgatgccgc cgagtttctc agaacgttcg acgagctcat cggcgtaacc cgccagcgca
     1981 acgatatccg gaccacggaa aacgaagtcg atatcggttc gtccgcccgc gccgaagtta
     2041 aacgactggc cgttgcggac acccgtgcgc atcggcgcgt atttttgcat acgccggcgc
     2101 acttcctgca tcacgtcctg ttgcgtgtag tttccgcgaa acgcgttgag cgggttgccc
     2161 ttcttcgttt ctgcccacag cttgctgaac gaaagcgttc gctcttcgtg tggcgcgatg
     2221 cgcacgtaag cgccgccctg gttcacgccg ccgagaaaac caccgcccgc cgaggacaac
     2281 acgagtcgca cacccggagt ttcaagaatg tctttctcca tcgcggtgat cacttcgttc
     2341 atcaccgcga gattggtgcc ttccggaccg ttgacgttga cttcaaactc cgcttcgtcg
     2401 acgttggtcg gaatgaactc ctgcttcacc gcgcgataca gcggaatgct cgtaagcaca
     2461 accgcgagcg agagcaacgc gaccgccatc cggtggcgca tcgcaaacgc gagcaggtgt
     2521 gaatagccgg cgtcgatcca gcgatagaaa cccttgcgcg acgcgggctc gtcgtgcccg
     2581 cctttcgcat cgctcacgcg aatcaaccgc gagctcatca tcggcgtcag cgtgaacgaa
     2641 acgagcaagc tgacgagaat cgcgaccgcc gcagtgatac caaactgata aaggaaccgg
     2701 cccgagatcg acgacatgaa cgacaccggc aggaagatca cgaccagcga aagcgttgtc
     2761 gccaaaacag ccagaccaat gtccttcgtc gcttcacgcg ccgcttcttt cgcttcgatt
     2821 cgcttctcct caatgaagcg gaagatgttc tccagtacca caatggcgtc gtcgatcacc
     2881 acgccgacca tcagcacgag cgcgagcata gtgacgctgt tgagcgtgaa gtcgagagcg
     2941 cgcatcatgc caaacgtcga gatcaccgaa cacggaatcg cgacggcggc gatcaacgtc
     3001 gagcgccacg agcgcatgaa gatcagcact acgagactag cgagaatact gccgaggatc
     3061 aggtgtgtct gaatttcgtg aagcgcggct tcgatgtagc gcgactggtc gcgaatgact
     3121 tcgagtttta tatcttcggg cagttgccca ctgacgcgcg gcaatgcttc cttcagaccg
     3181 ttgatgactt caaccgtgtt cgcgcctgat tgccggcgaa tgtcgagcgt aacggtcgga
     3241 acgccgttga gacgtgaaaa tgagcgctgc tcttttgtgc cgtcttcaac gcggccgaca
     3301 tcgcggagtc tgataggcgc tccgtttaca ttcgcgataa cgagatcggc gaactgtcgt
     3361 g
//
LOCUS       DASWTX010000197         1519 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_371309, whole genome shotgun sequence.
ACCESSION   DASWTX010000197 DASWTX010000000
VERSION     DASWTX010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1519
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_371309"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..643
                     /locus_tag="VGD38_03060"
     CDS             <1..643
                     /locus_tag="VGD38_03060"
                     /inference="COORDINATES: protein motif:HMM:NF015284.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent,
                     subunit alpha"
                     /protein_id="HEY0727022.1"
                     /translation="AATVYKRAMDDTYQSDRGIAALSAYALAASEENGRGHLVITAPT
                     GGSAGVMPALVYGLGEGGRKLPLQKIRDGMLAAAAIGYLCKHHATLSAAEGGCQAEIG
                     VASSMAAALTATAHDASSRVVENAAESALEHHLGMTCDPVAGYVQVPCIERCAFGAVK
                     AWTAYAIASNEIETRHRVNFDECVQALAETARDMNSKYKETSEAGLAQSVVLC"
     gene            841..>1519
                     /locus_tag="VGD38_03065"
     CDS             841..>1519
                     /locus_tag="VGD38_03065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727023.1"
                     /translation="MSSLTLFAASAFAQQKDVATAEHKPAKPETTVAPAPKRNDLESE
                     VANLKAENAAVRELLRRMEEQQKLLLDQVERLQRRLDGPTTADAQLTAQAAETAAPLK
                     DPAPAENTSADPVAAPKAPNDDDRYRDGIVIWETKEDATVPFLLKFTNTTQVRYLNTL
                     ASNDTFTDHLGVVREVHKRNDVTVNRSMFVFNGYIFDKRARYNLTVWTSAGAASIVVA
                     GNIGWQFN"
BASE COUNT          337 a          456 c          458 g          268 t
ORIGIN      
        1 ggcggcgact gtttacaagc gtgcgatgga tgatacgtat caatcggatc gtggtatcgc
       61 tgcgttgtcg gcgtatgcgt tggcggcgtc cgaagagaac ggacgcggcc acctcgtgat
      121 cactgcgccg actggcggct cggctggggt gatgccggca ctcgtctacg gactcggcga
      181 aggcgggcga aagcttccgt tgcagaagat ccgcgacggc atgctcgccg cggcggcgat
      241 cggttatctc tgcaaacacc acgcaacgtt gtcggctgct gaaggcggct gtcaggctga
      301 gatcggcgtt gcatcgtcga tggctgcggc gttgacggcg accgcgcacg acgcgagttc
      361 gcgcgtcgtc gagaacgcag cggagtcggc gctggagcat catctcggga tgacgtgcga
      421 tccggttgcg gggtacgtgc aagtcccttg catcgagcgt tgtgcattcg gcgcggtgaa
      481 ggcgtggacg gcgtacgcga tcgcgagcaa cgaaatcgaa acgcggcatc gcgtcaactt
      541 cgacgagtgc gttcaggctt tggctgaaac cgccagggac atgaacagca agtacaagga
      601 gacgagcgag gccggcctgg cccaatccgt ggtgctctgc tgatcgagcg ggctttgcct
      661 cgagagtcct tctcattcac accgggcttc agcccggttc tggacggaga cgctaactga
      721 aaacaaggtg ggtgccttct actgggctga agccaggtgg gaatgagaag gactgagcaa
      781 agctgatcga ggaccaacat gttaagacgc tgtccagaca tcaagctcct cgtcctcttg
      841 atgagctcac tgactttgtt cgcggcttct gccttcgcac agcagaagga cgtcgcgacc
      901 gccgaacaca aacctgccaa accggagacc acagttgctc cggcaccaaa gcgcaacgat
      961 ctcgagagtg aagtcgcgaa cctgaaagcc gagaacgccg ctgttcgaga actgcttcgc
     1021 aggatggaag agcagcagaa gttgctgctg gatcaggtcg aacgtttaca gcggcggctc
     1081 gatggcccga cgaccgccga tgcgcaactt acagcgcaag cagcggaaac cgcagcccca
     1141 ttaaaagacc ccgcgcccgc agaaaacact tccgcagatc cggtagccgc gcccaaagcg
     1201 cccaacgacg acgatcgtta ccgcgacggc atcgtgatct gggaaacaaa ggaagacgca
     1261 acagttccct tccttctcaa gttcacaaac acaacccagg tccgctatct caacacactc
     1321 gcatcaaacg acacgttcac cgatcacctc ggcgtcgtcc gtgaagttca caaacgcaac
     1381 gacgtcaccg tgaatcgttc gatgttcgtc ttcaacggct acatcttcga caagcgcgcg
     1441 cgctacaacc tcaccgtctg gacctccgcc ggcgccgcgt cgatcgtcgt cgccggaaac
     1501 atcggctggc agttcaaca
//
LOCUS       DASWTX010000198         1759 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_413945, whole genome shotgun sequence.
ACCESSION   DASWTX010000198 DASWTX010000000
VERSION     DASWTX010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1759)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1759)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1759
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_413945"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..407)
                     /locus_tag="VGD38_03070"
     CDS             complement(<1..407)
                     /locus_tag="VGD38_03070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727024.1"
                     /translation="MERSSDPTNPNTTVRCAYCHSQLIAPNELSGQPARVVRIQLGLG
                     SAPKLSKWLWLLLAIPLLVLVVIGLAAFGVLAPVFYSVSRPTNQPTTTTPGGGKISSK
                     ENSNSFANVLLEFGSEGIGPGMFNDARSIAVDGA"
     gene            528..995
                     /locus_tag="VGD38_03075"
     CDS             528..995
                     /locus_tag="VGD38_03075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727025.1"
                     /translation="MSLEVKREVLRHMVATVAYRGGLAIKDAPAGFETFRAHETTRTP
                     GEILAHIGDLLEGSLHLVKGEMVYLTSAPLPWPDEIRRFFSAVKAFDGHLATDAPLAC
                     EVERLIQGPVGDALTHVGQIVMLRRMAGKPIESGAYFTADITVGEINEEAFTK"
     gene            1011..>1759
                     /locus_tag="VGD38_03080"
     CDS             1011..>1759
                     /locus_tag="VGD38_03080"
                     /inference="COORDINATES: protein motif:HMM:NF037667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727026.1"
                     /translation="MRTLKIFALAVFLQMLAGAICVSAQTENITRQEMLRGSITPERE
                     WWDLLHYHLQVEFLPETRRLKGSNTISFKTVKPGNKMQIDLQPPLAITKIAHGTSQLK
                     FEREGNVYWVMFEKELAKGAEDKIEVFYEGVPTVSKNPPWVGGITWGRDDLGNHFIVT
                     TCQGIGASIWWPNKDHGADEPDRGMQISVTVPENLVAVSNGRLKKTDHDVAAKKKTYH
                     WQVVNPINNYGVNVNIGNYVNFSDKYQGKGGV"
BASE COUNT          427 a          476 c          507 g          349 t
ORIGIN      
        1 gcgccatcga cagcaatact gcgcgcgtca ttaaacatgc cgggaccgat tccctcgctg
       61 ccgaattcga gcaacacatt cgcgaagctg ttactgtttt ccttcgacga gattttgccg
      121 ccgccgggtg tcgtggtggt cggttgattc gtggggcggc ttaccgagta gaataccggc
      181 gccagcacgc cgaatgccgc gagcccgatc acgacgagga cgagaagcgg gatcgccagg
      241 agcaaccaga gccatttgga caacttgggc gcggaaccca gcccgagttg aatacggacc
      301 acgcgcgccg gttgtcccga gagctcgttc ggggcgatca gttggctgtg gcaataagcg
      361 cagcgcacgg ttgtgttcgg gttcgttgga tctgaagaac gctccaacgt gacgggcgct
      421 ccacacttgg gacagtcaaa agtttgcggc atatttatcg tgttaagaag aaactgattg
      481 aatgttcata tagcggccca cggattctat caaaactgag gtgaacgttg tcgttggaag
      541 tgaaacgtga agtgctgcgt cacatggtgg cgaccgtggc gtatcgcggt ggcttggcaa
      601 ttaaagatgc gcctgcgggt ttcgagacgt tccgcgctca tgaaacgacg cgcacgccgg
      661 gagagattct ggcgcacatc ggcgatctgc tggaaggctc gcttcacctg gtcaaaggtg
      721 agatggtcta tttaacttcc gcgccgctac cgtggccaga cgaaatcagg cgcttctttt
      781 ccgcagtgaa agcgtttgac gggcatctcg cgactgacgc gccgcttgcc tgcgaggtcg
      841 agcgattgat tcaaggccct gtcggcgacg cgctcacgca cgtcggacag atcgtcatgt
      901 tgcgccgcat ggcggggaaa ccgatcgaaa gcggcgcgta tttcactgct gacataactg
      961 tcggcgagat taacgaagaa gcgttcacaa agtgatgact ctttaaccct atgcgcacac
     1021 taaaaatctt tgcactcgca gtcttcttac aaatgctcgc cggagcaatc tgtgtttctg
     1081 cccaaaccga aaacattacc cgccaggaaa tgctgcgcgg ctcgatcacg ccggaacgcg
     1141 aatggtggga cctgctgcat taccacctgc aagtcgaatt cctgcctgaa acgagacgcc
     1201 tgaaaggctc gaacacgatc agtttcaaaa ccgtgaaacc cggcaacaag atgcagatcg
     1261 atctccagcc gccgttggca atcacgaaaa ttgctcacgg cacttcgcag ctcaaattcg
     1321 aacgcgaagg aaacgtctac tgggtgatgt ttgaaaagga acttgcgaaa ggcgcggaag
     1381 ataagatcga agtcttctac gaaggcgtgc cgacggtaag caagaatcca ccgtgggttg
     1441 gtggcatcac ctggggacgc gacgatctcg gcaaccactt catcgtcacg acgtgccagg
     1501 gtatcggcgc gagtatctgg tggcccaaca aggatcacgg cgctgatgaa cccgaccgcg
     1561 gaatgcagat cagcgtcacc gtgccggaga acctcgtcgc cgtttcaaac ggccgcttga
     1621 aaaagactga tcacgacgtc gccgcgaaaa agaaaacgta tcactggcaa gtcgtgaatc
     1681 cgatcaacaa ctacggagtc aacgtcaaca tcggcaacta cgtgaacttt tctgacaagt
     1741 accagggcaa aggcggcgt
//
LOCUS       DASWTX010000199         1955 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_175594, whole genome shotgun sequence.
ACCESSION   DASWTX010000199 DASWTX010000000
VERSION     DASWTX010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1955
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175594"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1426)
                     /locus_tag="VGD38_03085"
     CDS             complement(<1..1426)
                     /locus_tag="VGD38_03085"
                     /inference="COORDINATES: protein motif:HMM:NF014732.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GumC family protein"
                     /protein_id="HEY0727027.1"
                     /translation="MKPPTDLVKHEPAAALQSVERPQSYNYGVDPNAQNEVHLIDYWR
                     AIRKRLWMVLGLVALITMLAVLYVARKPDYFEAQARVQVKPEDNSTFSGKPPYFYSAS
                     EESVYFNTQLQILTSQGLLRRVVRTLDLEHNPDFFKGSTAQKRSTWRTILEMTGISQR
                     EPSVAEKPDELPVTASAVAPASSREDLAEAKRLAAYVGAILSGLKVDPVKESRGYYKE
                     TSLIDIRYSHTDPQVAAKVVNAIADTYVYANLEKKVETNSSTGTFLQKRIAELQQQIR
                     TDEERLVNYARNNQIISLDPSQNTVVERLAGLNRQLLEAENERKTAEAAFNAASVPGA
                     AEALAENDAKQVSDLDTKLNDLRQKRAQLLVEATEEAPEVKEVDQQVTELNRQLKDLR
                     GKKQTTLLTTLETRYKQSLGREQAFRKAFDEQRAETLTQNEAAINYRIIQQEIETNKT
                     LLNSLLQGAKENDVVIAGKPNNFSV"
     gene            complement(1459..>1955)
                     /locus_tag="VGD38_03090"
     CDS             complement(1459..>1955)
                     /locus_tag="VGD38_03090"
                     /inference="COORDINATES: protein motif:HMM:NF022007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HEY0727028.1"
                     /translation="NIVHSTNVSTCKQTTDNEDNGAFSTFKLSEVLAGKPEANPYLEA
                     GDIVTVPEADQVYVVGNVFMPLTIPLREPITLTRAIAMAGGLKQDTRKDKIRVLRQEP
                     GTSVRKEITVDLYAIEKKRSEDLALAPNDIIDVPTSAGKSFLRSLIQGVVPGVGQLPV
                     RVVP"
BASE COUNT          358 a          581 c          535 g          481 t
ORIGIN      
        1 caaccgagaa gttgtttggc tttccggcga tgacgacgtc gttttccttc gcaccctgta
       61 gcaggctgtt gagcaacgtc ttgttcgttt cgatttcctg ctggatgatg cggtagttga
      121 tcgccgcttc attttgcgtc aacgtttcgg ctcgctgctc gtcaaacgcc tttcggaacg
      181 cctgctcgcg accgagtgat tgtttgtatc gcgtctcaag cgtggtcaac agagtcgtct
      241 gtttctttcc gcgcagatcc ttcaactgcc tgttgagctc ggtaacctgc tggtccacct
      301 ctttgacttc gggcgcttct tcagtcgcct caaccaaaag ctgtgcgcgc ttctggcgca
      361 gatcgttcag cttcgtgtcg agatcggaaa cctgtttcgc gtcgttctcg gccaacgctt
      421 ccgcggcgcc cggaacactc gccgcattga acgccgcttc cgcagtcttc cgctcgttct
      481 ccgcttcgag caactggcga ttcagaccgg ccagacgctc aacgaccgtg ttctgactcg
      541 gatcgagcga gatgatctgg ttgttgcgcg cgtagttaac gagacgttct tcgtcggtcc
      601 tgatctgctg ctgcaactcg gcaatgcgct tttggagaaa cgttcccgtc gaactgttcg
      661 tctccacttt cttctcgagg ttcgcataca catacgtgtc ggcgatcgcg ttgacgacct
      721 tcgcggcaac ctgcggatcg gtgtgcgagt agcgaatatc gatcaggctc gtctccttgt
      781 aataaccacg cgactccttc accgggtcga ctttcaagcc actgagtatt gccccaacat
      841 aagccgcgag gcgctttgct tccgctaaat cctcgcgcga tgacgcgggc gcgacggcag
      901 acgcagtaac cggcaactca tcaggcttct ccgcaacgct cggctcgcgc tgactgatcc
      961 cggtcatctc gagaatcgtt cgccacgtcg atcgcttctg cgcggtgctg cctttgaaga
     1021 aatccggatt gtgttcgaga tcgagcgtgc gcacgacgcg gcgcaacaat ccctgggaag
     1081 tcaaaatctg aagctgcgtg ttgaagtaaa ccgattcttc actcgcgctg tagaagtacg
     1141 gcggcttgcc gctgaacgtc gagttgtcct ccggtttcac ctgcacgcgc gcctgcgctt
     1201 cgaagtaatc cggcttacgc gcaacgtaga gaacggcgag catcgtgatc agcgcaacta
     1261 gaccaagcac catccacaga cgtttgcgga tcgcgcgcca gtaatcgatc aggtgaactt
     1321 cgttttgcgc gttgggatcg acgccgtagt tatacgactg cggccgttcg acgctttgaa
     1381 gagcagcggc gggctcgtgt ttgactagat ctgtaggagg tttcatgttt ttaataggtc
     1441 ctataggtcc tattggacct atggcacaac tcggacgggt aactgtccga ctccgggcac
     1501 cacaccttga atcaaactgc ggaggaaact tttgccggct gaggtcggca catcgatgat
     1561 gtcattcggc gcgagcgcga ggtcttcaga acgcttcttc tcgatcgcgt acaggtcaac
     1621 cgtgatctct ttgcgcactg acgtgcccgg ctcctggcgc aacacacgaa tcttgtcctt
     1681 gcgcgtgtcc tgcttcagcc cgccggccat cgcgatcgcg cgcgtcaacg tgatcggctc
     1741 gcgcagcgga atcgtcaacg gcataaacac gttgccgacg acgtaaacct gatccgcttc
     1801 cggcaccgtc acgatatcgc cggcctcgag atacggattc gcttccggtt tgcccgcgag
     1861 cacctcgctg agcttgaacg tcgaaaacgc accgttgtct tcgttatcag ttgtttgctt
     1921 gcacgtcgag acgttggtcg agtggacgat gttga
//
LOCUS       DASWTX010000200         2945 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_349952, whole genome shotgun sequence.
ACCESSION   DASWTX010000200 DASWTX010000000
VERSION     DASWTX010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2945
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349952"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..555)
                     /locus_tag="VGD38_03095"
     CDS             complement(<1..555)
                     /locus_tag="VGD38_03095"
                     /inference="COORDINATES: protein motif:HMM:NF005012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HEY0727029.1"
                     /translation="MAEHEEGFVLTTVDSIMNSIRRSVGAKTIDMAAPVVNWARKSAL
                     WPMTFGLACCAIEMIAAGAGRFDIDRFGAGVFRPSPRQSDLIIIAGTVTLKMGPVVRR
                     VYDQMPEPKWAIAMGACASTGGPFDSYSTMQGVDRCIPVDVYIPGCPPRPEALFYGLM
                     RLQDIIMREAPSAYIFESAGSVHRQ"
     gene            complement(559..978)
                     /gene="ndhC"
                     /locus_tag="VGD38_03100"
     CDS             complement(559..978)
                     /gene="ndhC"
                     /locus_tag="VGD38_03100"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF012717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HEY0727030.1"
                     /translation="MMLLQAVTTTTQPTVGSPITAYWPVMIFFGVAVIFPVLPIILGR
                     FLRPIKYQKDKMRPYECGIDPKTEAHERFTVRYYIVAMLFLIFDVETIFLLPWAIIFM
                     GDDFSFTTFALIEMFVFIGILVVGYYYAWRKGALEWA"
     gene            1296..2735
                     /locus_tag="VGD38_03105"
     CDS             1296..2735
                     /locus_tag="VGD38_03105"
                     /inference="COORDINATES: protein motif:HMM:NF028240.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative porin"
                     /protein_id="HEY0727031.1"
                     /translation="MLEAEIERQNAKLDQLQKTISEQQATLQALLDRLSIKSPPPQAL
                     ASNTAESPEPQPPPIEKRVEKLESDVRKIGPFRFSGDFRLRFDGTFRSASEPPDPPLD
                     RVQNARARYRLRLNFDTDIHPNLSFHGQLSTGPLNNQLSTNQDFTSFNIRTPFSLSEA
                     WIEYRPTKSIQLQGGRVQSVFADNSRFLFDDDLRFNGFNERYTASFKDNGAYVTSLEL
                     RAGQYILSTPNVAVIQPNSPLARIGAVVGTTGRSANLFHQGFLVNQKFNEQWSSQAGA
                     DIQLYRHPNQIQLASTNEGLVLLVQPGIGIALSGPMPGTGNATTTPGGVVYTAPGFQV
                     LRLTYRLNHTGFTYNDHQYPITFNLQFARNVATGRNERDAMLAALQIGRAQKRGDMGF
                     MYVFAIKGANSMISQVTDDDLGTNTGVNIRTNHFRFEYGLSRKVTFQSLFFYQKSLRR
                     SGQFPNFFVPVGDFAPATYRVQQQLVFNF"
     gene            complement(2732..>2945)
                     /locus_tag="VGD38_03110"
     CDS             complement(2732..>2945)
                     /locus_tag="VGD38_03110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727032.1"
                     /translation="TNEAVVAVPTVTVSIDPESGLLATSTCPVKSRMTYPSGSEPHGY
                     CKINHVVKPEKKSGLKGLAKRISEID"
BASE COUNT          697 a          897 c          760 g          591 t
ORIGIN      
        1 ctgccggtga acagatccgg cgctttcaaa gatgtatgcg gagggagcct cccgcataat
       61 gatgtcctgc aaacgcatca atccgtaaaa caacgcttcc ggacgcggcg gacaaccggg
      121 aatgtaaacg tcaaccggaa tacaacgatc gacgccctgc atcgtcgagt acgaatcgaa
      181 tggtccacca gtcgaagcac acgcgcccat cgcgatggcc cacttcggtt ccggcatctg
      241 atcgtaaacg cggcgcacca ccggtcccat cttcaaggtc acggtgccgg cgatgatgat
      301 cagatcgctc tgccgtggac tcggccgaaa cacgcccgca ccgaaccggt cgatgtcgaa
      361 acgtccggcg cccgccgcga tcatctcgat cgcgcaacac gcgagaccga acgtcatcgg
      421 ccacaacgcc gacttgcgcg cccagttcac cactggcgca gccatgtcga tcgtcttcgc
      481 gccgacagat cgccggatcg agttcatgat cgaatcgacg gtcgttagta caaatccttc
      541 ttcgtgttca gccataaatt aggcccactc aagggcgccc ttgcgccagg catagtagta
      601 accaaccacc aggatgccga taaagacaaa catctcgatg agcgcaaaag tcgtaaacga
      661 gaagtcgtcg cccatgaaga tgattgccca cggcagcagg aaaatcgttt cgacgtcaaa
      721 aatcagaaag agcatcgcga cgatgtagta gcgcaccgtg aatcgctcgt gcgcttcggt
      781 cttcggatcg atgccgcact cgtacgggcg catcttgtct ttctggtact tgattggccg
      841 gagaaagcgt ccgaggataa tcgggagcac gggaaagatt acagctacgc cgaaaaagat
      901 cattaccggc cagtaagctg tgatcgggct gccgacagtc ggctgagtcg tggtcgttac
      961 cgcctgaaga agcatcattc cttgtcgaga tccgatgtgg gaagagcctg agacgttaag
     1021 aacaggaaaa tagtaagcgg cgcatcagag cattgtcaac gatcactctc tattcacatg
     1081 aatgtaactt catagcaagg tggatttaag gccgcggtca tacgctatgg cgttcgttcc
     1141 taatcaacgc acacactcga ggaaccaagc ccatgaaggt cattctttgg ttggccgttt
     1201 tcttttgcgg actcataccc attcaagctc aagagctagt tacgagcaca accagaacgc
     1261 ctgacacggc ggaaagtgtt aacgaacgcg tccgagtgct cgaagccgaa atcgaacgcc
     1321 agaacgcaaa gctcgatcag cttcagaaga ctatctccga acaacaagct actctccagg
     1381 cgctattgga tcgtttatcc ataaaatccc ctcctccaca ggccctcgca tcgaacaccg
     1441 ctgaaagtcc ggagccccag cctccgccaa tcgaaaaacg cgtcgaaaag ctcgaaagcg
     1501 acgtccgcaa gatcggcccg tttcgtttca gcggcgactt tcgcctgcgg tttgacggca
     1561 cctttcgctc tgcgagcgaa ccgcccgatc caccactcga ccgcgtgcaa aacgcgcgcg
     1621 ctcgttatcg tctacggcta aacttcgaca cagacattca cccgaatctc agtttccacg
     1681 gccagctctc caccggcccc ctgaacaatc aactttcaac aaaccaggac ttcacttcgt
     1741 tcaacatccg cacgccgttt agcttgagcg aagcgtggat cgagtatcgc ccgacgaagt
     1801 cgattcaact gcagggcggc cgggtgcaga gtgtcttcgc cgacaactcg cggttcctgt
     1861 ttgatgacga ccttcgcttc aacggcttca acgaacgtta caccgcttcc ttcaaagaca
     1921 acggcgctta cgtgacgagt ctcgagttgc gcgccgggca gtacattctt tcaacgccga
     1981 acgtcgcggt cattcagcca aacagtccac tcgctcgcat cggcgcagtc gtcggcacga
     2041 ccggccggtc cgcgaacctg tttcatcagg gctttctcgt gaatcaaaag ttcaacgagc
     2101 aatggagcag ccaggccggc gccgacattc aactttatcg ccacccgaac cagatccagt
     2161 tggcgtcgac aaacgaaggt ctcgtgctgc tggtccaacc gggaatcggt atcgcgctct
     2221 caggtccgat gccgggaaca ggcaacgcca ccaccacgcc gggcggagtc gtttacaccg
     2281 cgccggggtt ccaggtttta cggctgacgt atcgtctcaa ccacaccggc ttcacgtaca
     2341 acgatcacca atacccgatc acgttcaacc tgcagttcgc gcgcaacgtc gccaccggca
     2401 ggaacgaacg cgacgcgatg ctcgcggcgt tgcaaatcgg ccgcgcacag aaacgcggcg
     2461 acatgggttt catgtacgtc ttcgcgatca aaggcgccaa ctcgatgatc tcgcaagtga
     2521 ctgacgacga cctcggcaca aacaccggcg tcaacattcg cacaaatcac ttccgcttcg
     2581 agtacggtct ctcgcgcaag gtgacgttcc agagcttgtt cttctatcag aagtcactac
     2641 gccgcagcgg acagtttcca aacttcttcg tccccgtcgg cgatttcgca ccggcgactt
     2701 atcgcgtgca acagcagttg gtatttaact tttagtcgat ttcggagatg cgcttggcga
     2761 gacctttgag gccggacttt ttctcgggct tcacgacgtg gttgatcttg cagtagccgt
     2821 gaggctcgct gccgctcggg taagtcatgc ggcttttgac gggacaggtg gacgttgcga
     2881 gtagaccact ttccggatcg atcgaaacag taactgtcgg aaccgcgacg acagcttcgt
     2941 tcgtt
//
LOCUS       DASWTX010000201         2217 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_88911, whole genome shotgun sequence.
ACCESSION   DASWTX010000201 DASWTX010000000
VERSION     DASWTX010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2217)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2217)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2217
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88911"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2217
                     /locus_tag="VGD38_03115"
     CDS             <1..>2217
                     /locus_tag="VGD38_03115"
                     /inference="COORDINATES: protein motif:HMM:NF024603.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HEY0727033.1"
                     /translation="ANGALSADLPGLGQYAFLVADTGATAPPMPVLGQPLPSSQAADS
                     AALDSAQASAVSSPRSAAFSAVTKSSISFVATSPSQLPSGVSIEASFGETYNLLGGKD
                     PVLVDRPAQDFVLYAFPSASGEQPTRLGAFFIAKPTRTNYSITEIFNANVHVEIRSGR
                     TNKLGALIDNQGGSLRAGDGSQFSIPANAVSGQQSVFFDNIQLQSAGVTLPAGYELLA
                     AFDVDLGSNTLNSSATISVPGLTGDLSRVVVAQLITVGGQRSPKVVARAVVDTNDKLV
                     STTATPPAPSGITLHGIRSTGRYVFIRVPSDFGYLKGTITDAATNAPQAMVRVSTNQT
                     PFVDVTGNDGQYLLVGIAGVSPTGVNQIGAAALSTDATGAATASLEAQDAVANANIAL
                     SAVALQVESITPASGAQNMIATTPVTVTFNKPIAAQTLTGSSFTLSTDAGNPVLGNIT
                     VLAGSRVVVFTPAATLAASTKYKVSLTTAVRDIYGHALSAAFNSTFTTAATVVISNRL
                     KPEQITISYPDANGNSTVSIPAGSVPNGSTILIVNNTSGSTISTVAGTTALNLQIQAV
                     VGDEIALTISQPDGTQYRVVQAAYRRADGFVSVGSNGGTVTSDDGQVLLSVPAGAIQG
                     QADLKLSTFAESAITIPRQGEMDPANVPFGAGVRITSSGNFTNTQELHLEVAAPPTAA
                     EAQRVVFMKPAKITEAGVERDVWEVVTSGKVEGGKFKTMSPPFIGVTLVSTLGIYD"
BASE COUNT          457 a          684 c          634 g          442 t
ORIGIN      
        1 ctgccaacgg cgcactatcc gcagacttgc cggggttggg acagtatgca tttctggttg
       61 ccgacactgg cgcgactgcg ccgcccatgc ccgtgttggg ccaacctctg ccatcgagtc
      121 aggccgcgga ttcggccgcg cttgattcgg cccaggcttc ggctgtttca tcgccgcgaa
      181 gcgcggcttt ctcggcggtc acgaagtctt caatctcatt cgtggcgacg tcgccgtcac
      241 aacttccttc cggcgtttcg atcgaagcgt cgtttggcga aacgtacaat cttctcggcg
      301 gaaaagatcc ggtgttggtc gatcgtccgg cacaggactt tgtgctctat gcattcccct
      361 ccgcgtccgg cgaacagccg acgcggctcg gcgctttctt catcgcgaag ccgacacgca
      421 cgaactattc gatcacggaa atattcaatg cgaacgttca cgttgagatt cgctcgggaa
      481 gaacgaacaa gctgggtgcg ttgatcgaca atcagggcgg cagtttgaga gctggcgatg
      541 gctcgcagtt ttcgattcct gcgaatgccg tatcgggcca gcaatcagtg ttctttgaca
      601 acattcaact gcaatccgcc ggcgtcacgt tgcctgccgg ttacgaactg ctcgcggcgt
      661 tcgacgtcga tttgggcagc aacactctga actcatccgc gacgatctcg gttccgggtt
      721 tgactggcga tctgtcgcgc gtagtcgtgg cgcaactgat cactgtgggt gggcagcgct
      781 cgccgaaggt tgtggcgcgt gccgttgtcg acacgaatga caaactggtt tcgacaactg
      841 cgacaccgcc ggcgccgtca ggaatcacgc ttcatggaat caggtcgacg ggccgttacg
      901 tgttcattcg tgtgccgtcc gactttggct acctcaaagg cacgatcaca gatgcagcca
      961 cgaacgcgcc acaagcgatg gtgcgtgttt caaccaatca gacgccattt gtcgatgtca
     1021 caggaaacga tggccaatat ctgttagtgg gaatagcagg cgtctcgccc acgggcgtga
     1081 atcagatcgg cgccgctgcg ctgtcgactg atgcaacggg cgccgcgacc gcatcgttgg
     1141 aagcacagga cgccgtcgcc aacgccaaca tcgcactgag cgcggtggca cttcaggtgg
     1201 aatcgatcac gcctgcatca ggcgcgcaga acatgatcgc gaccactccg gtcacggtca
     1261 ctttcaacaa acccatcgcc gcacagacac tgaccggctc cagcttcacg ctcagcaccg
     1321 atgccggcaa tcccgtactc ggcaacatca ccgtgctcgc cggcagtcga gtcgtagtct
     1381 ttacaccagc cgccacactc gcggcttcga cgaagtataa agtctcgctc accacggcgg
     1441 tccgcgacat ttacggccac gccttgagcg ccgccttcaa ctcaaccttc accactgcag
     1501 ctacagtcgt gatcagcaac cgcctcaagc ccgaacagat cacgatcagc tatcccgacg
     1561 caaacggaaa ctcgaccgtt tcaatccccg ccggcagtgt gccgaacggt tcgacgatcc
     1621 tcatcgtcaa caatacaagc ggctcgacga tctcgacagt tgccggaacc actgcgctca
     1681 acttgcagat tcaggccgtg gtcggcgatg agatcgcgct gacgatcagt caacccgatg
     1741 gcacacagta ccgcgttgtt caggctgctt accggcgtgc tgacggattc gtgtcagtcg
     1801 gctcgaatgg cggcaccgta acgagcgatg acgggcaagt gttgttgtcg gttccggcag
     1861 gcgcgatcca gggccaggcg gatctgaaac tgagcacgtt cgcagagtca gcgataacca
     1921 ttccacgtca gggcgagatg gatccggcga atgttccgtt cggcgccggc gttcgcatca
     1981 cctccagcgg taatttcacg aacacgcagg aactccatct tgaagtagcc gcaccgccga
     2041 ccgccgccga agcacagcga gtggtcttca tgaagccggc gaaaatcacg gaagccggcg
     2101 tcgagcgtga cgtgtgggaa gttgtcactt ccggcaaggt cgaaggcgga aagttcaaga
     2161 cgatgtcgcc gccattcatc ggcgtcacgc tggtaagcac gttgggcatt tacgacg
//
LOCUS       DASWTX010000202         5410 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_88917, whole genome shotgun sequence.
ACCESSION   DASWTX010000202 DASWTX010000000
VERSION     DASWTX010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5410)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5410
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88917"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(73..1183)
                     /gene="prfB"
                     /locus_tag="VGD38_03120"
     CDS             complement(join(73..1110,1112..1183))
                     /gene="prfB"
                     /locus_tag="VGD38_03120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_319006089.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEY0727034.1"
                     /translation="MSDILTTQELRASYDNLHARVNQLGGFFDVPARREELSRIEAQA
                     SAPDFWNDQEAAQKLLQDRSRLEKKIERQEQFDSQIADAEVLFEFAEEDESSLKELQS
                     LLARLEHDLSQAETEMLLAGDNDRRNAICTIHPGAGGTESQDWAEMLLRMYLKWAEQR
                     GFKAEVLEYQPGEEAGLKSVTFRVEGEYAYGLLAAEAGVHRLVRISPFDQAARRHTSF
                     ASLFVYPEIDEDIEVDIQDKDLRVDTYRATGAGGQHINTTDSAVRITHLPTGIVVSCQ
                     NQRSQHQNRAVAMQVLRSRLYELELEKRRAETAELEANKADISFGSQIRSYVLAPYQL
                     VKDTRTTLERGNVDAVLGGDIDDFIKAYLLARKAA"
     gene            complement(1183..2736)
                     /gene="lnt"
                     /locus_tag="VGD38_03125"
     CDS             complement(1183..2736)
                     /gene="lnt"
                     /locus_tag="VGD38_03125"
                     /inference="COORDINATES: protein motif:HMM:TIGR00546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006497 - protein lipidation [Evidence
                     IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HEY0727035.1"
                     /translation="MKLRLELPKRDEWAAAAMTALLLILSFPEFEFSIFAWVALAPLL
                     FVIARRPQPFPAFILGWSAGTAFFYSSCYWLTYSMIHYGGVPTIVAYLLLLPAAIVVG
                     VFPGLFALLFALSVKTWGHLGLLLAPVFWTALEWLRLVITGQLWNALGYSQAFHPTFI
                     QPAKWGGVYAVSFLIVTVNAAFVTPLLKQTPRRFILAVSVILLVSGVNIFSAIRTTYD
                     SDWINSPVHVVALQPNVPMEIVKSDEEMKALLDRHWSMTTNALKTLPNDGTPRIVIWP
                     ESPMNFTYAADRKFQEQLATFTKENQTSLLFNSLEPTLDNGFYNSALLINQEGRLIAQ
                     YDKIRLMPFGEYVPLPQWLPGASLITGIVGDFTPGDKYTLMPFGQHRAGTFICIESAY
                     PWIARRLTSEGADVLINISNDGYLGPTAVMRQHLANAVFRAVENGRPVIRVTNTGITA
                     RIEYTGRVHDLTAPFVTDVRVWEVYRSPVVRTFYTKYGDVFVYACMAITILAFAGILL
                     SSRRSFRQT"
     gene            complement(3123..3362)
                     /locus_tag="VGD38_03130"
     CDS             complement(3123..3362)
                     /locus_tag="VGD38_03130"
                     /inference="COORDINATES: protein motif:HMM:NF014062.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HEY0727036.1"
                     /translation="MYLKLLKEFVTARSRKRRPRLPAVSSKATVNTDLNPRGSVLAGG
                     ELWNAESKHGNSIRTDATVTIVGFRNHLLLVEERS"
     gene            complement(3369..5156)
                     /locus_tag="VGD38_03135"
     CDS             complement(3369..5156)
                     /locus_tag="VGD38_03135"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0727037.1"
                     /translation="MSLRLFSAVLLLFCLVSLPLPVAAQNASADVVMVLPFENTSNKA
                     EYNWVGESFADAIAELLNKPGLIVVSSDERELAYQQLRLPETVIPSRATAIKLARQAK
                     ATMIVIGNYSVMPPPKPAAEEPKTNNDQEKAPADAYVQVTARVIKVNEGRTMGEVLDG
                     GWATRQFDYGGPLTTLQDIHGRLAYQILYQRDKTLPFSQNQIVQEATKIPQKAFEAYV
                     KAVQLNLRDEVRARYLKNALHYYAEATSGAVYPQAAFELGRGYMSLGNWKDATEYFSK
                     IQKKEPHYAEAAFYASLGYTKLGDYGRALATVVPLSSELPLIGVYNNAGAVAVQAARE
                     NKNDAERTRLLNQATDFLGRAAESAPNDQMVHFNYGYALFLSGKYSEAAEHFRPVITA
                     DQRDGQAYFLFAKSLAKIGKTEAATAADDQARRYLQSAYAKWETEWQKSQTTNGVTVR
                     MRDVLDRTAVFNLARERQITAEANSPSSATQDLLIKARDLYQAGRDEEALPELHRVVM
                     IEPTNAEAYLLSGRINLRRSDQEAAIAALKTAIFWDPKLIDAHILLGRIFLERGDRGE
                     ARKYAQSAITIDPNNQEAIALQRQVTMGN"
BASE COUNT         1131 a         1487 c         1582 g         1210 t
ORIGIN      
        1 tggctccagc ttttctacgc cctgtagggt gggtatgaaa gtaccaccca ctgcgtgggt
       61 gggataccaa acttacgcag ccttgcgggc gagcaggtag gctttgatga agtcgtcgat
      121 gtctccacca agcactgcgt ccacgttacc tcgttccagt gtggtgcgcg tgtcttttac
      181 taactgatac ggcgcgagca cgtagcttct gatctgcgat ccgaatgaga tgtcggcttt
      241 gtttgcttcg agttccgcgg tttccgcgcg ccgcttttcg agctcgagct cgtaaagacg
      301 cgagcgcagc acctgcatgg cgacggcgcg gttctgatgt tgcgaacgct ggttttgaca
      361 ggaaactacg atcccggtcg gcaggtgcgt gatgcgcacc gctgaatcgg tggtgttgat
      421 gtgttgcccg ccggcgcccg tcgcgcgata cgtgtcgacg cgcaggtcct tgtcctgaat
      481 gtcgacttcg atgtcttcgt cgatctccgg atagacaaac agggaagcaa aagacgtgtg
      541 ccgccgcgcg gcctggtcaa aaggagagat ccgcaccaac cggtgaacgc cggcttcagc
      601 cgcgagcaaa ccgtaggcat actcgccctc aactctgaac gtcacgcttt tcagaccagc
      661 ttcctcgcct ggttgatact cgagaacttc agctttgaat cctcgctgtt cagcccactt
      721 gagatacatt cgcaggagca tctcggccca atcctgcgat tcggtcccac ccgcgcccgg
      781 gtgaatggtg caaatagcat tgcggcgatc gttatcgccg gcgagcagca tctccgtctc
      841 cgcctggctc aaatcgtgtt cgagccgtgc gagcaacgat tgcaactctt tcaacgaact
      901 ctcgtcttct tcagcaaact caaagagcac ttcagcgtcg gcgatctgcg agtcgaattg
      961 ttcctggcgc tcgatcttct tttccaatcg actgcgatcc tgtaacagct tttgcgcggc
     1021 ttcctggtcg ttccagaaat caggcgctga ggcctgcgct tcgatccggc tcagttcttc
     1081 acgtcgcgcc ggaacatcaa agaaacctcc cgagctggtt tacacgcgcg tggaggttgt
     1141 cgtacgaagc tctcaattcc tgcgttgtta aaatgtcact catcaggtct gtctaaaact
     1201 ccttctactg ctcaacaaaa ttcctgcgaa agccaggatc gtgatcgcca tgcacgcgta
     1261 aacgaaaacg tcgccatact tcgtgtagaa cgttctcaca acaggtgacc ggtaaacttc
     1321 ccaaacgcga acgtcagtca cgaacggcgc ggtcaggtcg tgaactcgac cggtgtactc
     1381 gatcctcgcg gttatgccgg tgtttgtgac cctaatcacc ggacggccgt tctcaaccgc
     1441 gcgaaagacc gcgttcgcga gatgctgtcg catcactgca gtcggaccaa gatagccatc
     1501 gttcgagata ttgatcagca cgtcagcgcc ttcactcgtc agtctgcgcg cgatccacgg
     1561 atacgccgac tcgatacaga tgaacgttcc cgcgcgatgt tgtccgaagg gcatcaacgt
     1621 gtacttgtcg cccggagtaa agtcgcccac gatcccggtt atcaaagacg ctcccggtaa
     1681 ccattgaggg agcgggacat attcgccaaa cggcatcagg cgaatcttat catattgcgc
     1741 gatcaggcgg ccttcttgat ttatcagcag ggccgaattg tagaagccgt tgtccaacgt
     1801 cggttcgagt gagttgaaga gcagtgaagt ctggttctct ttcgtgaacg tcgcgagttg
     1861 ctcctgaaac ttcctgtcgg cggcgtaagt gaagttcatc ggcgactcgg gccagatcac
     1921 gatgcgcggt gtgccgtcgt tgggaagagt cttgagcgcg ttggtcgtca tagaccagtg
     1981 ccggtccaaa agcgctttca tttcctcgtc gctcttcact atttccatcg ggacgtttgg
     2041 ttgcagtgcg acgacgtgta ccggcgaatt gatccaatcc gaatcgtaag tggttcggat
     2101 cgccgagaat atgttcacac cactgacgag cagtattacc gacaccgcta agatgaagcg
     2161 acgtggagtt tgcttcaaga gcggcgtcac gaacgccgcg ttcacagtga cgatcaaaaa
     2221 actgacggca taaactccgc cccacttcgc gggttgaata aaagtcggat ggaaagcctg
     2281 cgagtaaccg agcgcgttcc agagttgtcc ggtgataacg agtcgcagcc attcgagcgc
     2341 ggtccagaac accggcgcga gcagcaatcc aagatggccc cacgtcttca cgctgagcgc
     2401 aaacaacagc gcgaacagac ccggaaagac tccgacgaca atcgcggcgg gaagtaaaag
     2461 cagataagcg acgatcgtcg gcacgccgcc gtagtggatc atcgagtagg tgagccagta
     2521 gcacgagctg taaaagaagg ctgtgccggc ggaccaaccg agaatgaatg cagggaacgg
     2581 ctgtggacgg cgcgcgatga cgaagagcaa cggcgccaac gcgacccacg cgaaaataga
     2641 aaactcaaac tcgggaaacg agaggatgag aagcagcgcc gtcatagcgg ctgctgccca
     2701 ttcatctcgc tttggtaact cgaggcgtaa cttcattcgc gcgaagttta tcaaacgaag
     2761 cgaaaaaatt ttttcgcggc tgtcgttcaa cgtgattacg actggtcaaa tcgccgatat
     2821 ttgactcaaa aagacagaaa acgtcaccgg caaagtgaca aatttcgtcc ggcgtcaaaa
     2881 aacgtacgac atagttgtag tcgaagtttt tgggatactt gcgctttaaa atgcgggaag
     2941 acccggtcat ttctgaccga gtctgcgttt cggggggaag cactgaaggg tcgctcggaa
     3001 ggtagctggc gcagcggcag gcggcgctca ggggatgttg gcggcggggg cacggtcgac
     3061 gttttgtctg ttccgtgtcg tgccggttat ctcttgagca cgcgctgtgc cacgaatttt
     3121 cgttacgagc gttcttcgac gagtaagaga tgattgcgga agccgacgat ggtgactgtc
     3181 gcgtcggtgc ggatggagtt gccgtgtttc gattcggcgt tccacagctc accgcctgcg
     3241 agcactgagc cgcgtggatt gagatcggtg tttacagtcg ctttagaaga aacggcggga
     3301 agacgaggac gccgttttcg acttctggcg gtaacgaact ctttcaggag cttcaggtac
     3361 aacacttctt agttgcccat cgtgacttgc cgttgcaagg cgatcgcttc ctggttgttg
     3421 ggatcgatcg tgatcgcgct ctgcgcgtac ttgcgcgctt cgccgcggtc gccgcgttcg
     3481 agaaagatcc tgccgagcag gatgtgtgcg tcgatcagtt tcgggtccca gaagatcgcg
     3541 gtcttcaaag ctgcgatagc ggcttcctga tcgctgcggc gaaggttgat ccggccgctc
     3601 aacagataag cctcagcgtt ggtcggttcg atcatcacga cgcgatgcag ttccggcaac
     3661 gcttcttcgt cacgtccggc ctgataaaga tcgcgcgcct tgatgagcag gtcttgcgtt
     3721 gctgaactcg gcgagttggc ctcggcggtg atttgtcgtt cacgagcgag attgaaaacg
     3781 gcagtgcgat cgagcacgtc gcgcatgcgc acggtgacgc cgttggtggt ttgcgacttc
     3841 tgccactcgg tttcccactt cgcgtaggcg ctctgaagat atcgacgcgc ctggtcgtca
     3901 gcggctgtgg cggcttcggt tttaccgatc ttcgctaacg atttcgcgaa caggaaataa
     3961 gcctggccgt cgcgttgatc cgcagtgatt accggacgga agtgctcggc ggcttcggag
     4021 tacttaccgc tcaaaaacag cgcgtagccg tagttgaaat ggaccatctg atcgttcggc
     4081 gctgattctg ccgcgcggcc gagaaagtcc gtggcctgat tgagcaaacg agttcgttcg
     4141 gcgtcgttct tgttttcacg cgcggcttgc acggcgactg cgccggcgtt gttgtagacg
     4201 ccgatcagcg gcaactcgct cgaaagcggc acgactgtcg ctaaagcgcg cccgtaatcg
     4261 ccgagttttg tataaccgag actcgcgtag aacgctgctt cggcgtagtg cggttctttc
     4321 ttctgtatct tcgaaaaata ctcggtggcg tctttccaat taccgaggct catgtagccg
     4381 cggccgagct cgaaagccgc ctgcggatat accgcgccgc tcgtggcttc agcgtagtag
     4441 tgcagcgcgt tcttgagata gcgcgcgcgc acttcgtcgc gcaggtttaa ctgcacggcc
     4501 ttcacgtacg cctcaaaagc cttctgcgga atcttggtcg cttcctgaac gatctggttt
     4561 tgtgaaaacg gcagggtctt gtcgcgttga taaagaatct ggtacgcaag ccggccgtga
     4621 atgtcttgaa gagttgtgag cgggccgccg tagtcaaact gtcgcgtggc ccaaccgccg
     4681 tcgagcactt cgcccatcgt gcgtccttcg ttcaccttga tcacgcgagc ggtgacctgc
     4741 acgtaagcgt cagcgggtgc tttctcctgg tcgttgttgg tcttgggttc ttcggcagcg
     4801 ggttttggcg gcggcatgac cgagtaattg ccgatcacga tcatggtcgc tttggcctgg
     4861 cgcgcgagtt tgatagcggt ggcgcgcgag gggattaccg tttccggaag ccgcaactgc
     4921 tgatacgcga gctcgcgttc gtcactggaa acgacgatca gtccgggctt gttgagcaac
     4981 tcggcgatcg cgtcggcgaa gctctcgccg acccagttgt actcggcctt gttcgacgta
     5041 ttttcgaacg gcaacaccat cacgacgtcg gccgacgcgt tctgcgccgc cacgggcagc
     5101 ggcagggaaa caaggcaaaa tagcagtaaa acggcggaaa atagtcgcaa actcaagcta
     5161 caaaactcct cgaaaagaac tcagagggct aactgtagca gaaagttgcc acatgggcct
     5221 acgttggcgc gtgggctaca cggcggactt tcgtctcttc aaacgccgaa ggcgttggct
     5281 aattggagcc caggcattca acgccgaggg gttggctaat tggagcccag gcattcaacg
     5341 ccggaggcgt tgggctaatt tcagcccggc attcaacgcc ggaggcgttg ggctaattgc
     5401 agcccatcta
//
LOCUS       DASWTX010000203         1527 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_392921, whole genome shotgun sequence.
ACCESSION   DASWTX010000203 DASWTX010000000
VERSION     DASWTX010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1527
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392921"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..517
                     /locus_tag="VGD38_03140"
     CDS             <1..517
                     /locus_tag="VGD38_03140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727038.1"
                     /translation="LNFTVSHIWNAFDLDGGAGPKFPRVSPAALLDPNALQDPGPGRE
                     FFADVNVIYQPTSTLRWDFGYTKDRLVRNDTGLVAFDDNIFALRSTYQFTPFTFVRAR
                     VDYDTLQANLRGQFLLGWTPNPGTSFYIGYNDDLNYNGFNPFTVQPETGFRRNGRTFF
                     IKVSYLIRRTF"
     gene            552..>1527
                     /locus_tag="VGD38_03145"
     CDS             552..>1527
                     /locus_tag="VGD38_03145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727039.1"
                     /translation="MYKIALINMPFANLHMPSIALTQLKSVVEQRFGNEVSVDVHYLN
                     HDFANYLGLELYNRITDSADSQNSGLGDWFFRQMAFPDQTNNTGVYLSRYFPYHTEQM
                     NTLKSRVVEKRHGLDRFIDGLISKYALDRAQLVGFTSMFMQNAAVFSMARKLKALDSG
                     MTIVIGGANCESPMGQVIAKHVPAIDYVFSGPALKTFPELVQHCLNNEPRKIDSMKGV
                     FTKRNYFFQSGPDAIGEELSIDVPIDLDYKPFLNRLAENFPQENIEPILLFETSRGCW
                     WGERAHCTFCGLNGMSMAYRAMSPDLALKQFDSLFELAPPVTRLDAVDN"
BASE COUNT          330 a          401 c          411 g          385 t
ORIGIN      
        1 actcaacttc accgtcagcc atatctggaa cgcgttcgat ctcgacggcg gcgctggacc
       61 caagtttccg cgcgtgagtc cggcggcttt gctcgatccg aacgcattac aggatcccgg
      121 tcccggcaga gagtttttcg ccgacgtcaa cgttatctat cagccgacca gcacgttgcg
      181 ctgggacttt ggttacacga aggatcgatt ggttcgcaac gacaccggtc tcgttgcttt
      241 cgacgataac atcttcgcgc ttcgctcgac ttatcagttc actcctttca cgttcgtgcg
      301 tgcgcgagtc gattacgaca cgctccaggc aaacttgcgc gggcaatttc tgctcggctg
      361 gacgcccaat ccaggcactt ctttttacat cggctataac gacgatctga attacaacgg
      421 cttcaatccc ttcactgttc aacccgagac tggtttcaga cgtaacggac gcaccttctt
      481 tatcaaagtt tcttacctga ttcgccgcac attctgaccg ggcacacagc aatcaaaagg
      541 cggaggttct catgtacaag atcgctctca taaacatgcc gttcgcaaac ctgcacatgc
      601 cgtcgatcgc gctgacgcag ttgaagtctg ttgtcgaaca gagattcggg aatgaagtgt
      661 cggttgacgt ccactacttg aatcacgact tcgccaacta tctcgggctg gagctttata
      721 accggataac agattccgcc gactcgcaaa actccggtct cggcgattgg ttctttcgcc
      781 aaatggcttt tcccgatcag acgaataata cgggcgtgta tctgtcgcgg tactttcctt
      841 accacaccga gcagatgaac acgttgaaga gtcgtgtagt ggagaaacgt cacgggctcg
      901 atcggtttat cgatggtttg atctcgaaat atgctttgga tcgtgcgcaa ctcgtcgggt
      961 ttacgtcgat gttcatgcag aacgccgcgg tgttttcaat ggcccgaaag ctcaaggcgc
     1021 tcgattcggg gatgacgatc gtgattggcg gcgcgaactg tgagtcgccg atgggccagg
     1081 tgattgcgaa acatgttccg gcgatcgatt acgtgttttc gggaccggcg ctcaagactt
     1141 ttccggagct ggtccaacac tgcttgaaca acgagccgcg caagatcgac tcgatgaaag
     1201 gtgtgtttac gaaacggaac tacttctttc agtcgggacc ggatgcgatc ggtgaagagt
     1261 tgagcatcga cgtgccgatc gacctggact acaaaccgtt tctgaacagg ttagccgaga
     1321 actttccgca ggaaaatatc gagccgatct tgttgtttga gacgtcgcgt ggttgttggt
     1381 ggggtgaacg tgcgcattgc acgttttgtg gtttgaacgg aatgtcgatg gcgtatcgcg
     1441 cgatgagtcc ggacctcgcg ctgaagcaat ttgactcgct gtttgagtta gctccgccgg
     1501 ttacgcgttt ggacgctgtc gataaca
//
LOCUS       DASWTX010000204         4499 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_197094, whole genome shotgun sequence.
ACCESSION   DASWTX010000204 DASWTX010000000
VERSION     DASWTX010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4499)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4499)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4499
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197094"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>4499
                     /locus_tag="VGD38_03150"
     CDS             <1..>4499
                     /locus_tag="VGD38_03150"
                     /inference="COORDINATES: protein motif:HMM:NF019298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MG2 domain-containing protein"
                     /protein_id="HEY0727040.1"
                     /translation="LVLPSNLSAIRGDLHVVGTRDGVVSEAEGEVQVDTIVRTIITTD
                     KALYQPGQTMHIRALALSPVKRALANQNFVIRVLDPERVTVFMATARSSRFGVVNADW
                     PIPDNVRLGDYRIAVDREGDEIYNDFSVRISRYDLPNFTVQVEPDRGFYLPGQNAKVK
                     VRADYLFGQPVKRGHVRVVEEKSRDWSFREQQWQTNEGAEYEGETDAQGVFVANVDLT
                     DEHKDLGDWRDSRFNDLTYAAYFTDPTTNRTEQRRFTLRVTREAIHVYVVSNHATESG
                     QGYGLPLRFYVSTFYADGSPARCKVNVEFVADENTREQDRRLRRTIQTNRYGLAKASI
                     DLDDHFDFGALVTLQVRATDSQGGTGAAALDEFSIADETTVFVDTGKSLYSAGEPIVA
                     SITSNLPDQTLVVEVAKDWNVIRSERVRLRGGRATVNFPYARNFTGAITIAAYPDFAN
                     ENRLIGVRSILFPTDSELDLNVRTSQATYRPGEDARVRFNVRTSDGRTAESALGVVVS
                     DKAVDERMRIDSEFGGRYQPHNDLLMQLLGIDVQLSGVSFRDLQRLDLTKPVSPDLDL
                     LAEILLNENRQYYPTFFRGDEYETELATVFGPLINWEIRPVYEALSSRYLRTLQYPTD
                     EKTMREFLREAGIDFQQLHDPWGMNYRSTFATENKLDWMTVWSAGADKRIGTDDDFTV
                     LRMSWEHFKPLGQAIQRIVDSYHKRTGGFIRDRETLRQEFAREGVLLDQKRDRWGQPY
                     RFEFVVKQTTYVIKVSSGGPNGRFAADPNDASDDFTIWEVLSDYFAELRPQIEKALHD
                     KFSATARFPQNDSELREALRDSQQPFETLRDPWNRSYYAIFKTDVVQGATAKLEARAT
                     FGSTVTQQPKVTLVTRTIATVTLRSAGADGQQGTQDDFTVGIFSQTIAEQPHDEQREP
                     PSPLFLGNNGAIYGRVIDINGALVPGVTVIATRTPDILRYRTSTDDNGEYLLKDLPPG
                     TYEVRFESPPFVTTVFTSVEVRASVSTAVNATLEPGAVNQTVTVTAQSGSLDTITDAT
                     VATSYSSRQVRMGATAKPDSSAAQISTPRLREYFPETLVWQPLVETDGRGRAEIRFKL
                     ADNITTWKMAVIGSTEDGRIGTAEKEFKAFQPFFVEHDPPRVLTEGDEISLPVVVRNY
                     LDRLQKVDLEIKTENWFLLTGPARKQATVAAGDAANQTFDFRVVNSVDDGRQRITASG
                     ADANDAIEKPVSVHPDGEEVSVTAGGLLIDSASLELNLPDTAIPNSTRAELKIYPNLM
                     AHVMEGVEAIMKRPYGCGEQTISSTYPSLLLLRNYKQTGADFPGRARAERYFNTGYTR
                     LLNYRDENGGFAYWDNTNPDIALTAYALRFLTDASTVIELDQEVIKDARNWLIKQQAG
                     DGSWPPHQFGEEREKRAVLTAYVARILASTESKLVSSEARDEQDRAKFADSLKRAMDY
                     VGQRSNESDDAYLLASYALALIELRDTTRAKPVIDGLRSLALSEGDGSYWPLKTSTPF
                     YGWGNT"
BASE COUNT         1016 a         1190 c         1308 g          985 t
ORIGIN      
        1 ctggtcctgc cttcgaatct gtcggcgatt aggggagatc ttcacgtcgt cggcacgcgc
       61 gatggagttg tttccgaagc agaaggcgag gttcaggtcg acaccatagt ccgtacgatc
      121 atcacgaccg acaaggcgct ctatcaaccc ggacagacaa tgcacattcg cgcgctggcg
      181 ctgagtccgg tgaaacgtgc gctcgcgaat caaaacttcg tcatccgagt tctcgatccc
      241 gagcgggtga ccgtcttcat ggccaccgca cggagctcac gtttcggcgt cgtgaatgcc
      301 gattggccca ttcctgacaa cgtgcgtctc ggcgattacc ggatcgcggt cgatcgcgag
      361 ggtgatgaaa tctacaatga cttttccgtt cgcatcagtc gttacgatct gccgaatttt
      421 acagttcagg tcgaaccgga ccgcgggttc tacctgcctg gccagaacgc gaaagttaaa
      481 gttcgtgcgg actacttgtt cggacagcca gtgaagcgtg gccacgtgcg agtggtggag
      541 gagaaaagcc gcgattggag ttttcgcgaa cagcagtggc aaaccaatga aggcgctgag
      601 tatgaaggcg aaaccgatgc gcaaggcgtg ttcgtggcga acgtcgatct gacggacgag
      661 cacaaagatc ttggcgactg gcgcgactcg cgtttcaacg atctaacgta tgccgcatac
      721 tttactgacc cgactaccaa ccgcaccgaa caacggcgct tcaccctgcg cgtaacccga
      781 gaagctatac acgtctacgt ggtcagcaat cacgcgacag aatcgggcca gggctatggt
      841 cttccattgc ggttttatgt ttctactttt tacgctgatg gttcgcctgc gcgttgcaag
      901 gtaaacgtgg agtttgtcgc tgacgaaaac actcgagagc aggatcgccg tttacgacgc
      961 acgatccaaa ccaaccgtta cggtctcgcg aaagccagca ttgacctgga cgatcacttt
     1021 gactttggag cattagttac tctgcaagta cgcgcgacag attcccaagg cggcactggc
     1081 gctgcggcac tggatgagtt ttcgatcgcg gatgagacca cggtgtttgt cgatacgggc
     1141 aagagtttgt acagcgcggg cgagccgatc gttgcttcaa tcacgtcgaa ccttccggac
     1201 cagacactcg tcgtcgaagt ggcgaaagat tggaatgtga ttcgttccga gcgcgtgcgg
     1261 ctgcgcggcg ggcgtgcaac cgtgaatttt ccatacgcgc ggaattttac aggcgcgatc
     1321 actatcgccg cttatcctga tttcgcaaac gagaatcggc ttatcggtgt tcgttcgatc
     1381 ctgtttccaa ccgattccga actcgatctc aacgtcagaa cttcgcaagc gacgtatcgt
     1441 cccggtgaag acgcgcgcgt tcgcttcaac gtgcgcacat ctgatggccg gacagcggag
     1501 agcgcgttag gtgtcgtggt atccgataaa gctgtcgacg agcgcatgcg gatcgattcg
     1561 gaatttggcg gacgttacca gcctcacaac gatctactga tgcagttgct tggtatcgat
     1621 gtgcaactct cgggtgtgag tttcagagat cttcagcgtc tcgacctgac gaagccggtc
     1681 tcacctgatt tggatctgct ggcggaaatt ttgctcaacg agaacagaca gtactatccg
     1741 acgttttttc gcggcgatga atatgaaact gagctcgcga ccgtgttcgg cccgttgatc
     1801 aactgggaga tcagaccagt ctacgaggct ttgtcctcac gttatttgcg cacgctgcaa
     1861 tatcccaccg atgagaaaac catgcgcgag tttctgcgcg aggcgggcat cgattttcaa
     1921 cagttgcatg acccgtgggg gatgaattat cgcagcacct ttgcgaccga gaacaagttg
     1981 gactggatga cagtgtggtc tgctggagcc gacaagcgga ttggaactga tgacgatttt
     2041 acggtgctgc ggatgagctg ggagcatttc aagccattgg gccaggcaat tcaaaggatc
     2101 gtcgacagct atcacaagcg gaccggagga ttcattcgcg atcgcgaaac acttcgccag
     2161 gaatttgcgc gcgagggagt gttgctcgat cagaaacgcg atcgttgggg acaaccttac
     2221 cggttcgagt tcgtcgtgaa gcaaacgacg tatgtgatca aggtcagcag cggtggacct
     2281 aatggcaggt tcgcggctga tccgaatgac gcaagcgatg acttcacgat ctgggaggtg
     2341 ttgagcgatt acttcgcgga gttgcggccg cagatcgaga aagctcttca cgacaaattc
     2401 tcagctaccg ccaggtttcc gcaaaacgat agtgagttac gtgaggcgtt gcgtgattca
     2461 caacagccgt ttgagacgct gcgcgatccg tggaatcgat cttactacgc gattttcaag
     2521 acagacgtgg ttcaaggcgc caccgcaaag ctcgaggcga gagcaacatt cggcagtacg
     2581 gtcacgcagc aaccaaaagt gactctggta accaggacca tcgcgacggt tacactcagg
     2641 agcgccggtg cggatggaca acagggaacg caggacgatt ttaccgtcgg aattttttcg
     2701 caaactatcg ccgagcaacc tcacgacgag caacgggagc caccgtcgcc tttgtttttg
     2761 ggcaacaatg gtgcgattta cggccgcgtt attgacatca acggggcgtt ggttccaggc
     2821 gtcaccgtca tcgcgaccag aacgcccgac attcttcgtt atcgcacctc gacagacgat
     2881 aacggagaat accttctgaa ggatctgccg ccagggactt atgaggttcg ctttgagtca
     2941 cctccttttg tgaccacggt cttcacgagc gttgaagtgc gagcctcggt ctcgaccgcc
     3001 gtcaacgcaa cgctggaacc cggtgcggtc aatcaaaccg ttaccgttac ggcgcagtcg
     3061 ggcagtttag atacgatcac tgacgccacc gtcgccacct cttactcgag tcgccaggtg
     3121 cgcatgggag cgactgcgaa gccggatagt tccgccgcgc aaatttctac accgcggctg
     3181 cgggaatatt ttcccgagac tctggtctgg cagccgttgg tcgaaaccga cggacgtgga
     3241 cgcgcggaga tcaggttcaa actcgcagac aacatcacga cctggaagat ggccgtgatc
     3301 ggctccaccg aagacggacg catcggaact gccgagaaag aatttaaagc ctttcaacct
     3361 ttctttgtgg aacacgatcc gccgcgcgtg ttgactgaag gcgacgagat ctcgttgccc
     3421 gtggtcgtgc gcaactatct cgatcgattg cagaaagtcg atctcgagat caaaaccgag
     3481 aactggtttt tgttaacggg tccggcgcgc aagcaggcga cggtggcagc gggcgatgct
     3541 gcgaaccaga cgtttgattt ccgcgtcgtc aactccgttg atgatgggcg ccaacgcata
     3601 accgcatccg gcgccgatgc aaatgacgcg atcgagaaac cggtcagtgt tcatcccgat
     3661 ggggaagaag tttctgttac ggcgggcggt ctgctaatcg attcggcgtc gcttgaactg
     3721 aatctgccgg acaccgctat tcccaactcg acgcgcgcgg agttgaagat ttatcccaac
     3781 ctgatggccc acgtgatgga aggtgtggaa gcgatcatga agcggcctta tggttgcggc
     3841 gaacagacca tttcctccac gtatccaagt ttgctgttgc tgcgcaatta caagcagaca
     3901 ggcgcggact ttcccgggcg tgcgcgcgca gagcgttatt tcaataccgg ttacacacgt
     3961 ttgctgaact atcgtgatga aaatggcggc ttcgcatact gggataatac gaaccctgat
     4021 atagctctca cggcctacgc tttacgcttt ctgaccgacg cgtctaccgt gattgagttg
     4081 gaccaggaag tcattaagga tgcgcgcaat tggttgataa aacagcaggc cggcgacggc
     4141 agttggccgc cgcatcagtt tggcgaggaa cgggaaaaac gcgctgtgct cacggcgtat
     4201 gtcgctcgga ttttggcgtc gactgagtcg aagctcgttt cgtccgaggc tcgggacgag
     4261 caggaccgcg ctaaatttgc ggactcactg aaacgcgcca tggattacgt gggccagcga
     4321 agcaacgaga gcgacgatgc gtatctactt gcttcgtacg cgttggcgtt gatcgagtta
     4381 cgcgacacaa cacgcgcgaa accggtgatt gatgggttgc gctcgttggc tttgagtgaa
     4441 ggcgacggca gctattggcc cttgaaaacc agcacgccgt tttatggttg gggaaatac
//
LOCUS       DASWTX010000205         2932 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_328245, whole genome shotgun sequence.
ACCESSION   DASWTX010000205 DASWTX010000000
VERSION     DASWTX010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2932
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328245"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            30..635
                     /locus_tag="VGD38_03155"
     CDS             30..635
                     /locus_tag="VGD38_03155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727041.1"
                     /translation="MPLISESQPEPPALHDRAMDNLRYIRETMEAATAFTGISGWGEI
                     AIGVTALAASAIAALQATFNAWLAVWIAEGLISLLIAGWSMDRKTRAIKMPLGSGPGR
                     KAVFSLTPPMIAGGLLTIVLVQAGMINAIPGVWLLLYGTGVITGGMYSVRVVPIMGIC
                     LMALGALALFSPPAFGNWFMAVGFGGLHVVFGAIIVRKYGG"
     gene            628..1017
                     /locus_tag="VGD38_03160"
     CDS             628..1017
                     /locus_tag="VGD38_03160"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEY0727042.1"
                     /translation="MAKQSTAKKTVPQKPLAEAPDTQAARANEKSAAPNLDRLIHERL
                     RLGIISALAANDSLTFTDLKNLMNTTDGNLSVHARKLEEAGYISCTKFFEGRLPKTEY
                     KLTAAGRSALEKYLSHMEALIKQMRNT"
     gene            1084..2241
                     /locus_tag="VGD38_03165"
     CDS             1084..2241
                     /locus_tag="VGD38_03165"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF017634.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY0727043.1"
                     /translation="MRTSYDVTIIGAGLAGLQCARLLARQGVSVLLVDRKNTLDQKIH
                     TTGIFVRRTLVDFDIPDDCLGPAIRHVALYSPAHRSMELVSDHDEFRIGRMGQLYQRY
                     LQQCLLAGVDWLPHTSYLSHTANNGKLTLRLNSGSTTHTITTRYLIGADGARSRVARD
                     LNLEENREWIVGVESVLHGAVLDGPPRLLCFLDPILAPGYIAWIAYDGEETHLGVGGY
                     PSLFDPIPALQEFRSRVANIIDLRNAKQIESRAGFIPVGGVLRNIANANGLLIGDAAG
                     AVSPLTAGGLDPCMRLSAFAARVVTEYLSTGDTKVLQPYSGELFRSRFASRLWARRIA
                     ATVRQPQVLELGCAILRLPVFSRLAHHVFFGRGSFPDVAADVSATSSSVPV"
     gene            2353..>2932
                     /locus_tag="VGD38_03170"
     CDS             2353..>2932
                     /locus_tag="VGD38_03170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727044.1"
                     /translation="MFRKLNLTIALLSILSFANSTFASVYQTVDLSTGVNVGVIGNPL
                     YPVNGRDDFWIVRSVLNVPSPPNTSSWITNLPLGWNTIPGTRPIFGNNNGVGTSEYER
                     CFCLQAVDKAKLTLTMRADNRANLFLNSYFANQILQTISNTTFNSATPPAQFTYTAQT
                     GLKAGLNCIRVRVNNEGGPTGFAVKATLQGFGA"
BASE COUNT          613 a          924 c          785 g          610 t
ORIGIN      
        1 aggcgtaaga ttcctgaacg atgaagcccg tgccgctaat ctctgaatcc caacccgagc
       61 caccagccct gcacgaccgg gccatggaca acctgcgcta catccgcgaa acgatggagg
      121 ccgcgaccgc cttcaccggc atctccggtt ggggcgagat cgccatcggc gtcactgctc
      181 tcgccgccag cgccatcgcc gcgctgcaag cgacattcaa cgcctggctc gcagtgtgga
      241 tcgccgaagg actgatctcc ctgctgatcg ccggctggtc catggaccgc aaaacacgcg
      301 cgatcaaaat gccgctcggc tccgggccgg gtagaaaagc agtattcagt ttgacgccgc
      361 ccatgatcgc cggcgggctg ctgacgatcg tgctggtcca ggccggaatg attaacgcga
      421 ttcccggcgt ctggttactg ctttacggaa cgggcgtgat caccggcggc atgtactccg
      481 tcagagtggt gccgatcatg ggtatctgtc tcatggcgct cggcgccctc gcgctgttct
      541 cgccgccagc gttcggcaac tggtttatgg ccgttggctt cggcggcctg cacgtggtgt
      601 ttggtgcaat tattgtgagg aaatacggtg gctaaacaat ctactgctaa aaagactgtt
      661 ccccaaaaac cgctcgccga ggcgcccgat acacaggctg cacgcgccaa tgaaaagagc
      721 gcggccccga acctcgatcg actgatccac gaacggctgc gcctcgggat catcagcgcg
      781 ctcgcggcga acgactcgtt gacgttcact gatctgaaga acctgatgaa tacgactgac
      841 ggcaacctga gcgtacacgc gcgcaaactc gaagaagcgg gctacatttc ctgcacgaag
      901 tttttcgaag ggcgtctgcc gaagaccgag tacaaactga ccgccgccgg acgcagcgcg
      961 ctcgagaagt atctgagtca catggaagcg ctcatcaaac agatgcgtaa cacttagtgc
     1021 cggcccgtct ctccccgttt ctatcttccc aactcccgac acggacgact cggctatacc
     1081 tccatgagaa cgagctacga cgtaactatc atcggcgccg gactggccgg actacagtgt
     1141 gctcgcctgc tggcgcggca aggcgttagc gttctcctcg tcgatcgcaa gaacacactc
     1201 gaccagaaga tccacacgac cgggatcttc gtgcgccgca cgctcgtcga cttcgacatc
     1261 ccggacgatt gtcttggacc agcgatcagg cacgtagcac tttattcgcc cgcgcaccgc
     1321 tcgatggagc tcgtcagcga ccacgacgaa ttccgcattg gccgcatggg ccaactctac
     1381 cagcgttact tgcagcagtg tttactcgcg ggtgttgatt ggctgcccca cacgagctat
     1441 ctcagccaca cagcaaacaa cggcaaacta acactgcggc tcaactctgg ttctacgacg
     1501 cacacgatca cgacgcgcta cttgatcggc gcagatggcg cgcgttcgcg tgtagctcgc
     1561 gatctgaatc tcgaagaaaa tcgcgaatgg attgtcggcg tggaaagtgt gcttcacgga
     1621 gccgtgcttg atggcccacc gcggttgctt tgttttctcg atccaatact tgccccgggc
     1681 tacatcgcgt ggatcgctta cgacggcgaa gagacacacc tgggcgtcgg cggctatccg
     1741 tccttatttg atcccatacc ggctttacag gagtttcgtt cgcgcgtcgc aaacatcatc
     1801 gatctacgca acgcaaaaca gatcgaatca cgcgcgggct tcattccggt cggcggcgta
     1861 ctcagaaaca tcgcgaacgc aaatggcctg ttgatcggcg acgccgcggg cgctgtgtca
     1921 ccgcttaccg ccggcggttt ggatccttgt atgcgtctgt ctgcgttcgc ggcgcgtgtc
     1981 gtaaccgagt atctatcaac cggcgacacg aaagtcttac agccgtactc cggcgaacta
     2041 ttccgctcac gctttgcctc gcgcctctgg gcacgccgca tcgctgcgac cgttcgccag
     2101 ccgcaagttc tcgaattagg ctgcgcaatc ctgcgcctgc cagtcttcag ccgtctcgcg
     2161 catcacgtct tcttcggccg cggttccttc ccggacgtgg cggccgacgt gagcgcaact
     2221 tcatcctcag tcccggtgtg aacgttccta catgaaacgt aacggcagcg ttacgtttcg
     2281 acgcggagag tcactcagca gtgagcgcgc tcgtcgcaag ccagcgcgca atctgttcct
     2341 caaggagaaa ctatgttccg caaactcaat ctcaccatcg ctttattgag cattctcagc
     2401 tttgccaatt ccaccttcgc ttccgtttat caaaccgtcg acctcagtac cggcgtgaac
     2461 gtcggagtga tcggtaaccc cttgtatccg gtcaacggca gggatgattt ctggatcgtc
     2521 cgttcagttc tcaacgtccc ttcacctcca aatacttcgt catggatcac taacttgccg
     2581 ctgggatgga acaccattcc cggaacccgg ccgatctttg gcaataacaa cggcgtcgga
     2641 acatcggaat acgagaggtg tttctgcctt caagccgtcg acaaggcgaa gctcacactg
     2701 acgatgcgtg ccgacaacag ggcaaatctt tttcttaaca gctatttcgc aaatcaaatc
     2761 ctgcaaacga tctccaacac cacgttcaac agcgccactc caccggcgca gtttacgtat
     2821 accgcgcaga ctggtctgaa ggcaggcctc aactgcatca gggtacgtgt aaacaacgag
     2881 ggtggtccta ccggtttcgc cgtgaaggcg acgttacagg gttttggcgc cc
//
LOCUS       DASWTX010000206         3411 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_46790, whole genome shotgun sequence.
ACCESSION   DASWTX010000206 DASWTX010000000
VERSION     DASWTX010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3411)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3411)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3411
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46790"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..505
                     /locus_tag="VGD38_03175"
     CDS             <1..505
                     /locus_tag="VGD38_03175"
                     /inference="COORDINATES: protein motif:HMM:NF020795.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YwqG family protein"
                     /protein_id="HEY0727045.1"
                     /translation="FLPESTPPTDRTDWPADLPDYARYQAFSLSSVETVTLPPEESGL
                     VQHLHLYPDRLDAYQNLLDELSGGAWASRGLLGGHPDQIQNDMPLDCELVSARLYCGD
                     ASAYQDPRLPLFRKRARDWRLLLQVPSVEDAGMMWGDCGCLYYWIREEDLAARRFDQV
                     WMILQCT"
     gene            513..1685
                     /gene="chrA"
                     /locus_tag="VGD38_03180"
     CDS             513..1685
                     /gene="chrA"
                     /locus_tag="VGD38_03180"
                     /inference="COORDINATES: protein motif:HMM:TIGR00937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015109 - chromate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015703 - chromate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromate efflux transporter"
                     /protein_id="HEY0727046.1"
                     /translation="MAESHGIKLPNADRGSTSLWTLCLLFLRLGTTAFGGPAAHIAMM
                     EDEVVRRRRWMTQNEFLDLLGAANLIPGPNSTELAIHIGHRQAGWRGLLVAGISFILP
                     AMLIVMVFAWAYVRYGSLPQVAGVLYGVKPVIIVIVLQALWSLGRTAVKSTFLAFVAA
                     ASLALTLFRVHELLVLLSAGVVVALTRLTWPRLKRSAPLSVSASPLMLLLQTSAAVTA
                     PFGMWALFLFFLKVSAVLYGSGYVLLAFIRADLVERWHWLTETQLLDAIAVGQVTPGP
                     VFTTATFIGYVLGGTQGALVATLGIFLPAFFFVAVSGPLVPRIRKSPVAGAFLDGVNV
                     AALALMLVVTYELGRTAIVDLKTIALALTSALLLFRFRVNSAWLILGGAIVGLLIY"
     gene            complement(1791..2099)
                     /locus_tag="VGD38_03185"
     CDS             complement(1791..2099)
                     /locus_tag="VGD38_03185"
                     /inference="COORDINATES: protein motif:HMM:NF019301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HEY0727047.1"
                     /translation="MIRLVVGGVFLSEGIQKFLYPAENGAGRFARIGIPSPEVMGPFV
                     SVVEIVCGALILAGLLTRLAAIPLIVNMLVAILSTKIPILLGQGFWGFSLRTLPYYGF
                     "
     gene            complement(2177..2881)
                     /locus_tag="VGD38_03190"
     CDS             complement(2177..2881)
                     /locus_tag="VGD38_03190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727048.1"
                     /translation="MPHNRVPLLGLVLLALVASAFIATQLSSGKAPQSSNQPLKMKVL
                     REKVRVKNSPTESEIANFKKQLQEDERQLEDAIPKHVPLKIKIKKEKEAGFKDLKNER
                     WAREFELEVTNTGTKPIYFLYLYVVTDIKAAKGFRIVFPLTYGRGELGDIKTKAEPTD
                     VPLSPGETVSLTIHPGQLDAWDLARRRENRPFPKHLRVDFQILSFGDGTGYWGTDGMA
                     LPRATPDESAGCFHLD"
     gene            3176..>3411
                     /locus_tag="VGD38_03195"
     CDS             3176..>3411
                     /locus_tag="VGD38_03195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727049.1"
                     /translation="MKIMLNVNSAVERNETPHTNSTQNDTLKANRCISVAYRRRAESV
                     ISDRSIDARSRAVIRYALETNDPWLAELVRRAEAG"
BASE COUNT          714 a          961 c          927 g          809 t
ORIGIN      
        1 atttctaccc gaatctacac cgccaactga tcgtacggat tggcccgccg atctgcctga
       61 ctatgcgcgc tatcaagcgt tctctctaag ctctgttgaa accgtaacgt taccgcccga
      121 ggagagtggg ttggtccaac atctccatct ctatcccgat cggttggacg cctatcaaaa
      181 ccttttggat gaactatcgg gcggcgcttg ggcctcgaga ggtttgctcg gcggtcatcc
      241 cgatcagatt cagaacgaca tgccgctgga ttgcgaactg gtgtcagcac gcctctactg
      301 tggtgacgcg agcgcctatc aggatccgcg gttaccgctc tttcgcaaac gtgcccgaga
      361 ctggcgcttg ttgttgcagg tgccgagcgt cgaggacgcc ggcatgatgt ggggcgactg
      421 cggctgtctc tactattgga ttcgagagga agacttggcg gcgcggcgat tcgaccaagt
      481 ctggatgatt ctccagtgta catagtttcg cgatggcgga atcgcacggc ataaaacttc
      541 ccaacgcaga tcgcggctca acttcattgt ggacgctctg cttactcttc ctgcgcttag
      601 gcaccactgc tttcggtggt ccagcggcgc acatcgcgat gatggaagac gaagtcgtgc
      661 gccgccgccg ctggatgacg cagaacgagt ttctcgactt actcggcgcc gccaatctca
      721 tccctggtcc aaactccacc gagctcgcga tccacatcgg acacagacaa gcaggctggc
      781 gaggactact cgtcgccggc atcagcttca ttctgccggc gatgctgatc gtcatggtgt
      841 tcgcgtgggc ctacgttcgc tatggttcgt tgccgcaagt tgcgggtgtg ctttacggcg
      901 tcaaacccgt gatcatcgtg atcgtgttac aagctttgtg gtcgctcggc cgcacagcag
      961 ttaagagcac ttttctcgcg ttcgttgctg cggcgagtct tgcgctaacg cttttccgag
     1021 tgcacgaact gctcgttctt ttatcagcgg gtgtagtggt cgcgttaaca cgactaacgt
     1081 ggccacggct gaagagaagc gcgcccctgt ccgtgtcagc atcgccactg atgctgttgt
     1141 tacagacgag cgctgccgtg accgctccgt tcggaatgtg ggccttgttt cttttctttc
     1201 tgaaagtcag cgcagtgctc tacggcagcg ggtacgtgct gctcgctttc attcgcgcgg
     1261 atctcgtcga gcgctggcac tggctgaccg agacacagtt actcgacgcg attgccgttg
     1321 gccaggtaac accgggacct gtgttcacga cggcgacgtt catcggctac gtgcttggcg
     1381 gaactcaagg cgcgttagtc gcaacgttgg gaatcttcct gccggcgttc ttcttcgtcg
     1441 cggtgagtgg accactcgtc ccgcgcattc gcaagtcgcc agttgccgga gcgtttctcg
     1501 acggcgtcaa cgtcgccgcg ctcgcgctga tgctggttgt cacctacgag ctcggccgca
     1561 cggcgatagt cgatctgaag accatcgcgc tggctttaac gagcgcgctg ctactctttc
     1621 gctttcgcgt gaattccgcg tggttgattt taggtggggc gatcgtgggt ttgctgatct
     1681 actgatctga cgagccgggc gtcgatggac cacaagcctg cgccgacaat caacagaaat
     1741 atcgaaccag ccaacatcgc gaagtcggtg cgcgcctcgt ggagcatgcc ttagaatccg
     1801 taatagggaa gcgtgcgcag actgaatccc caaaaaccct ggcccaatag gatcggaatc
     1861 ttggtcgaca gtatcgcgac gagcatgttg acgatgagcg ggatggcagc cagccgcgtc
     1921 agtaaaccgg cgaggatcaa agcgccgcac acgatctcaa cgacactcac aaacggtccc
     1981 atcacctcag gcgacggaat tccgatcctg gcgaacctcc ccgcgccatt ctccgccgga
     2041 tagagaaact tctggattcc ttccgagaga aacacacctc cgacaacgag tcggatcaaa
     2101 aacacagacc gcggtgcgct ggtttgtata agtcgcttca catcgattgg catgattggt
     2161 gagggtagtc gctctgctaa tcaagatgga aacagcccgc ggactcgtcg ggtgtggcgc
     2221 gcggaagtgc cattccatca gtgccccagt agccagtgcc gtctccgaaa ctcaagatct
     2281 ggaaatctac cctaagatgc ttgggaaatg gtctattctc cctccgacgc gcaagatccc
     2341 acgcatcaag ctggcccgga tgaattgtca atgaaacggt ttcgcccggt gagagtggga
     2401 catcggttgg ttcagccttc gtttttatgt ctcctaactc gcctcgtcca tacgtcaagg
     2461 gaaacacgat gcgaaagccc ttcgcagctt tgatgtcagt cactacatac aaatatagaa
     2521 aatagatcgg tttagtgccg gtattagtta cctcgagttc gaactctctg gcccatcgtt
     2581 cgtttttcaa gtccttaaac ccggcttctt tctccttctt gatcttgatc ttcaagggaa
     2641 cgtgcttcgg tatcgcgtct tccaattgcc tttcgtcttc ctgcaactgc tttttgaaat
     2701 ttgcgatctc cgattccgta ggtgaattct tgacgcgaac cttctcccgc aaaactttca
     2761 tttttaacgg ctggttgctc gattgcggag ctttaccgct gcttaactgg gtcgcgatga
     2821 atgcggaggc tacgagtgct aacaggacca acccgagaag aggaacacga ttgtgtggca
     2881 tagtggctcc tgttgttgcg aggctcaaat accgttcgaa cgttgttcag gtcgagtgat
     2941 cgggtcacga ccgcctgcgt caaacgctga atcattctgg cagtgttttc aggaagcggt
     3001 caaccattag agggttgttg gaccatctcg ttcggcgtga gacccgacaa ataatcactt
     3061 cacatcgatg accctgatct gtgttatagt gcgcgcactg ctcccaaaaa tgaagcgggc
     3121 cgactcgtgg ttgcaacacg aaccgaccct gtaccctcaa ccttcttagg aaaggatgaa
     3181 gatcatgctt aatgttaaca gcgcagtgga gcgcaacgaa acacctcaca ccaactcaac
     3241 tcaaaacgac acgcttaaag ctaatcgatg tatctctgtt gcatacagac gtcgtgcgga
     3301 atctgtaatc agcgaccggt ccattgatgc acgcagccga gccgtaattc gttacgcact
     3361 cgaaacaaac gatccgtggc tggcagaatt ggtgcgccgc gcagaagccg g
//
LOCUS       DASWTX010000207         2057 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_306702, whole genome shotgun sequence.
ACCESSION   DASWTX010000207 DASWTX010000000
VERSION     DASWTX010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2057
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306702"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..513
                     /locus_tag="VGD38_03200"
     CDS             <1..513
                     /locus_tag="VGD38_03200"
                     /inference="COORDINATES: protein motif:HMM:NF014336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S1/P1 nuclease"
                     /protein_id="HEY0727050.1"
                     /translation="DRGGNHRFLFYLSDEAFQSNNVKSCVQAPNSCTEKFGNERSNLK
                     LHAAWDKYMIQTEMRTNADRGPDFKAYGKSLIAQLPSDRTAARYADIESGNFVQWARE
                     THQLAEQNAYALIGPKDKVSPADGETYRFYLLNEEYREKNIAVIDEQLIRAGIRLAAL
                     LRKIFPDSET"
     gene            609..1094
                     /locus_tag="VGD38_03205"
     CDS             609..1094
                     /locus_tag="VGD38_03205"
                     /inference="COORDINATES: protein motif:HMM:NF017015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY0727051.1"
                     /translation="MKLRILMLLSCLLLFTAPGFAQSTPQKAPDPAAEMRNGFNEVNG
                     WVMTAAETVPADKYNYKPVDTVRTFGQLIAHIADSYNYFCTNAAGTKVEWSEAVEKGK
                     TDKDTLLPKLKEAVGRCNTAYGSSNAQFRQLLMNVGHTNLHYGNIITYMRMMGLKPPS
                     S"
     gene            complement(1086..>2057)
                     /locus_tag="VGD38_03210"
     CDS             complement(1086..>2057)
                     /locus_tag="VGD38_03210"
                     /inference="COORDINATES: protein motif:HMM:NF028222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose 1-dehydrogenase"
                     /protein_id="HEY0727052.1"
                     /translation="DKEINAAEYGQAPPGYDFLIIGHESFGQVEAVGPNVTEVKPGDY
                     VVATVRRPGSSIYDLIGTNDMTTDDTYFERGINLRHGYMSEFYVDDAEFIVKIPQGLK
                     EVGVLLEPTTVVEKGIAQAYEIQRRLRVWKPKRAAVMGAGTIGLLATLVLRLRGLEVT
                     TFGKTPKPYLNSDLIEAIGASYQSTEDLSIIDGAKQYGPFDITFEATGYSPVVFDSMQ
                     ALGRNGVLVLSSVTGGDRRIEVPADKINLEFVLGNKVMVGTVNANREYFEMGVKDLAQ
                     AEAEYPGWLARLLTHPVRGLENYQELFAKLTNPNGAIKVFCEVAPLT"
BASE COUNT          478 a          603 c          538 g          438 t
ORIGIN      
        1 gatcgcggcg gcaatcaccg gttccttttc tacctgtctg acgaagcctt ccaaagcaat
       61 aacgtcaaga gttgcgtgca agcgccgaat agctgtactg aaaaatttgg caacgaacgg
      121 tccaacctga agttgcacgc cgcctgggac aagtacatga tccagacaga gatgaggacg
      181 aacgctgatc gtggtcccga tttcaaagcg tacggaaaat ccctgatcgc gcaattgcct
      241 tccgatcgga cggccgcgag gtatgccgat attgaatccg gtaactttgt ccagtgggcc
      301 agagaaacgc accagcttgc ggaacagaac gcttatgcgt tgattggtcc caaagacaag
      361 gtcagccctg ccgacggtga aacctaccgg ttctatcttc tcaacgaaga gtaccgggaa
      421 aagaatatcg ccgtgatcga cgaacaattg atacgcgccg gcattcggct cgctgctctc
      481 ttgcgaaaaa tctttcccga ttctgagact tgagaccgtt cataacccga acgataccgt
      541 tcgcgtattg ctggttgcta tttcgacggt ctacggcata ggatgcgcct ccaaaaggag
      601 gccccgctat gaaactcaga attcttatgc ttctctcctg cctgctgttg tttacggctc
      661 caggcttcgc tcagtcaacg ccgcagaagg cgcccgaccc cgcggctgaa atgcgcaatg
      721 gttttaatga agtgaacggc tgggtgatga cggccgccga aacggtcccc gcagacaagt
      781 acaactacaa gccggtggat acggtgcgca cgttcggcca gttgatcgcg cacatcgccg
      841 actcctacaa ctacttctgc accaatgcgg ccggtactaa agtcgagtgg tctgaagcag
      901 tcgaaaaagg aaagaccgac aaagacacgc tgcttccgaa actcaaagaa gccgtcggtc
      961 gctgcaacac cgcctacggc tccagcaacg cgcagttcag acagttattg atgaatgtgg
     1021 gccatacgaa cctgcactac ggcaacatca tcacgtacat gcgaatgatg ggtctgaagc
     1081 cgccgtcaag ttaaaggcgc cacttcgcag aacactttaa tcgcgccgtt agggttagta
     1141 agcttcgcga acaactcctg gtaattctcg aggccgcgca ccgggtgtgt cagcaaacgc
     1201 gccagccagc cgggatactc cgcctcggcc tgcgcgagat ctttcacacc catttcgaaa
     1261 tactcgcgat tggcattcac ggtcccgacc atgactttgt tgccaagcac gaactcgaga
     1321 ttgatcttgt cggcgggcac ttcgatccgg cgatcgccgc cggtgacgct cgacaacacg
     1381 agcacgccgt tccttccgag cgcttgcatg ctgtcaaaga cgacgggcga gtaaccggtt
     1441 gcttcgaaag tgatgtcgaa cgggccgtac tgcttcgcgc cgtcgatgat cgagagatct
     1501 tcggtcgatt gataactggc gccgatcgct tcgatcaggt ctgagttgag atagggcttc
     1561 ggggttttac cgaacgtggt cacttctaaa cctctgagtc gcagcaccag cgtcgcgagc
     1621 aagccgatcg ttcccgcgcc catcacggct gcgcgcttcg gcttccacac gcgcagacgc
     1681 cgctgaatct cgtaagcctg cgcaatgccc ttctcgacga cggttgtcgg ttcgagcaac
     1741 acgccgacct ctttcaaacc ctgcggtatc ttcacaatga actcggcatc gtcgacgtaa
     1801 aactcactca tgtaaccatg acgcagattg atgccgcgct cgaagtaagt atcgtccgtc
     1861 gtcatgtcgt tggtgccgat cagatcgtaa atactcgaac ccggacggcg cacggtcgcc
     1921 acgacgtaat cacccggttt cacttcagtc acgtttgggc caactgcttc aacctgtcca
     1981 aaactctcgt gaccgatgat cagaaaatcg tatcccggag gcgcctggcc gtactcggcg
     2041 gcgttgatct ctttgtc
//
LOCUS       DASWTX010000208         3129 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_240415, whole genome shotgun sequence.
ACCESSION   DASWTX010000208 DASWTX010000000
VERSION     DASWTX010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3129
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240415"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            43..1986
                     /locus_tag="VGD38_03215"
     CDS             43..1986
                     /locus_tag="VGD38_03215"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RICIN domain-containing protein"
                     /protein_id="HEY0727053.1"
                     /translation="MKRTLTLFALLVVSVAVVVLTTAHSQNPNSNSSKFRRVRADKRI
                     ANQYIVVLKDDVADVDGEAFRLSRDFAGDRNGGHTYKHAIKGFSVRMSEERAAKLADD
                     PRVAYVEEDGVVSISATQTNPPWGLDRIDQRNRPTDGRYTYNATGTGVRAYIIDTGIR
                     ATHTDFGGRVISGFDAIGDGFGTNDANGHGTHVAGTVGGSTWGVAKNVTLIAVRVLDA
                     AGFGSNSGVVAGVDFVTSHHQAGQPAVANMSLGGPIATVIDDAVVRSINDGVTYAVAA
                     GNDNVNACNQSPARVPSALTVGATSNTDARSVFSVGASNFGTCVDLFAPGSNIPSAWK
                     GSDTDTNTISGTSMATPHVAGVAALYLEKNPNASPSAVAAAIINGATTGVVTNAGTGS
                     PNRLLYTITNIPDPVYEGFIDHVSCDTITGWAADRTRLNTSINVKIYDGSTLVTTVLA
                     RELRSDVGNYLGDNGRHGFAIQLPSRFKNGAPHTLRVRFEESTVELVNSPQTMTCGSQ
                     YTYYEIVARHSGKCLDVSDASTLSGAPVIQWTCIGDTNQQWLPIPIGDGYLKFVARHS
                     GKVLAVQSTSNGAPVVQLTEAGTAPQQWQIFDVGGGYLRIMARQSGRALDVANASTTD
                     GAQIIQWDYVGATNQQWLARPVN"
     gene            complement(2042..2959)
                     /locus_tag="VGD38_03220"
     CDS             complement(2042..2959)
                     /locus_tag="VGD38_03220"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY0727054.1"
                     /translation="MDNEARSPDDRGCLFCPNHESGWHYKDVGHGRPLILLHGIGMSH
                     VAWKKVINNLASDRRVLAFDIAGFGITPPVPDNVQPTPANLLAGASSLAETLRHIDEQ
                     KQISKDFEYVDIVGNSLGGYLALEAAKLGKLGPFRIASIATISPAGLWKKHYPMRSVL
                     ALQLTRLGVRHFPRLTRTLMRRQYTRKLMMAVPVSANVSEEDAYELVNVFASAPLFAS
                     RIAFEKFRDCMKDPFKGGTTIFDSIRITIAFGTRDWLLPRSARLRHEIPQHVIWEDRK
                     RWGHVPMLDDPEGVTKFILGSTSVSTPST"
BASE COUNT          686 a          878 c          921 g          644 t
ORIGIN      
        1 cgcgatcaat agcaacagtc tcagattaac aggaggtccc ttatgaagag aacgctcact
       61 ctgttcgctt tgctagtcgt gtctgtagcc gtcgtggttc tcaccacagc tcacagccag
      121 aaccccaaca gcaactcatc aaaattccgt cgcgtacgcg cggacaaacg gattgccaac
      181 caatacatcg tggtactcaa agacgacgtc gccgacgtag acggcgaagc ttttcgtctc
      241 tcgcgcgact tcgccggcga tcgcaatggc ggccacacct acaaacacgc catcaagggc
      301 ttttcagtgc gcatgtctga ggaacgcgcc gccaaactgg cggacgatcc gcgggttgcg
      361 tacgtcgaag aggatggcgt agtcagcata tccgcaacgc agacaaaccc accctgggga
      421 cttgaccgga tcgatcagcg caaccggccg accgatggaa gatacaccta caacgccacc
      481 ggcacgggag tgagggctta catcatcgat accggcatcc gtgcaacaca cactgacttt
      541 ggtgggcgcg tgatttccgg tttcgacgcc atcggcgacg gtttcggcac gaatgacgcc
      601 aacgggcacg gcactcacgt ggccggtact gttggcggtt caacttgggg tgtcgcaaag
      661 aacgttacgc tgatcgctgt ccgcgtcctt gacgccgctg gctttggcag taattccggc
      721 gtcgttgccg gagtggattt tgtaacctcg catcatcagg cgggccaacc ggcagtagcc
      781 aacatgagtc tgggtggtcc aattgcgacg gtgatagacg acgcggtcgt tagatcaatc
      841 aacgacggcg tgacgtacgc ggtggctgcg ggaaatgaca acgtgaatgc gtgtaaccag
      901 tctcccgccc gcgtgccgag cgcgcttact gtcggcgcga cttcaaacac tgatgcgcga
      961 tcggtgttca gtgttggcgc ttcaaatttc ggaacgtgcg tcgatctgtt tgctccgggc
     1021 agcaacattc catctgcatg gaaggggagt gataccgaca ccaacacgat ctcgggcacg
     1081 tcgatggcga caccgcacgt cgcgggcgtg gcggcgttgt acctggaaaa gaacccgaac
     1141 gcatcgccgt cggccgtggc tgcggcaatc atcaacggcg ctacaaccgg cgtggtgact
     1201 aatgccggaa cgggatcccc caaccggctc ctctatacca tcaccaacat ccccgatcct
     1261 gtttacgaag ggttcataga ccatgtgagc tgtgacacga ttacgggctg ggcggcggac
     1321 cggactcgtc tcaacacctc gatcaacgtg aagatttacg atgggtcaac gcttgtcacg
     1381 acagtgctgg cgagagaact gcgatccgac gtgggcaatt acttaggcga caacggaagg
     1441 catggctttg cgatacaact tccttcgcgc ttcaagaatg gagcaccgca cacgctccgc
     1501 gtgcggtttg aggagagcac ggtagaactt gttaacagcc cgcaaacaat gacgtgtgga
     1561 tcgcaataca cgtactacga gatcgtcgcc aggcactctg gtaagtgtct cgatgtttcc
     1621 gacgcgtcaa cgcttagcgg cgccccagtc atacagtgga cgtgtatcgg ggacaccaat
     1681 cagcagtggc taccaattcc gattggcgac gggtatctca agttcgtcgc gcgccacagc
     1741 ggtaaggtgc tcgccgtgca gtctacttcg aacggcgctc ctgtcgtgca gttgacggag
     1801 gcgggcacag ctccgcagca gtggcagatc ttcgacgtgg gtggtgggta cctgcgaatc
     1861 atggcccgcc agagtgggag ggcgctcgac gtggcgaacg cgtctaccac cgacggagcc
     1921 cagataattc agtgggatta cgtcggcgcc actaaccagc agtggctagc gcggccagtt
     1981 aattaaaacc tcatcaaagt gatgtgggaa agtcaggctg attttttggc ctgacttttc
     2041 tttatgttga cggggtggaa accgatgtcg atccgagaat gaacttcgtc acgccttcgg
     2101 ggtcgtccag catcggcacg tgcccccaac gctttcgatc ttcccagatg acgtgttggg
     2161 gaatttcgtg acgcaaacgc gcgctgcgcg ggagtaacca gtcgcgcgtt ccgaaagcga
     2221 tcgtgattcg aatgctgtcg aagattgtcg tgccgccctt aaaagggtcc ttcatgcagt
     2281 cacggaattt ttcaaaagcg atcctggaag caaagagcgg agcggaggca aagacgttta
     2341 ccaattcata agcgtcttct tcggacacgt tggccgacac cgggacagcc atcatcagtt
     2401 tgcgcgtgta ttgccgtcgc atcaacgtgc gggtcagacg cgggaaatgt cgaacgccca
     2461 ggcgcgttag ttgaagggcc agcacgctgc gcatcgggta atgtttcttc cacaggccgg
     2521 cgggcgagat ggtggcgatg gatgcgatac gaaacggacc cagtttcccg agcttggctg
     2581 cttcgagcgc gagatatccg cccaaagagt tccccacgat gtccacgtat tcaaaatctt
     2641 tgctgatctg tttttgttcg tcgatgtggc gcagtgtttc ggccagcgaa ctggcgccgg
     2701 cgagaaggtt ggctggtgtg ggctgaacgt tatcggggac aggtggagtt atgccaaagc
     2761 ccgcgatatc aaacgccagg acacgccggt cgctagcaag attattaatg accttcttcc
     2821 acgcaacatg cgacatgccg atgccgtgga gcagaatcaa agggcggccg tgccccacat
     2881 ccttgtaatg ccagcccgat tcgtggttcg gacagaaaag gcaaccacgg tcatctggcg
     2941 atcgagcttc gttgtccatt tcgttcagca ccggtgagcg gtgtgattat agaccaacag
     3001 gcgagctctg cgactctact ttaaaagttc agcgtcagat gatctgaccg ccggagacct
     3061 cgatgcgttg agccgtcatc cactcggtgc cgtcgtcgag gagctccgcg accgctgcgc
     3121 cgatgtctt
//
LOCUS       DASWTX010000209         3564 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_153950, whole genome shotgun sequence.
ACCESSION   DASWTX010000209 DASWTX010000000
VERSION     DASWTX010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3564
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153950"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..307)
                     /locus_tag="VGD38_03225"
     CDS             complement(<1..307)
                     /locus_tag="VGD38_03225"
                     /inference="COORDINATES: protein motif:HMM:NF025690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4388 domain-containing protein"
                     /protein_id="HEY0727055.1"
                     /translation="MQNNRFVVLTGHLSNYPLSDLVGILRHQKKTGRLLIEYPKGPAT
                     FFFQEGELIDARLNDLVGLQAICVALAEPDAAFNFNPLIPAPRRSIEPSLHRAVAELF
                     "
     gene            complement(334..1533)
                     /locus_tag="VGD38_03230"
     CDS             complement(334..1533)
                     /locus_tag="VGD38_03230"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0727056.1"
                     /translation="MNIKGRIVPAVLLLGPVLTFTAPVKAQNSVTASARPAISVLDST
                     KEQDGLVGSVRRVKTETARIEIKDGHPVEGPPQLVEVTTYGIKGNRIENTSYPLAGSL
                     AGKEEYKYDERGNITEMTLRDERGAILSREAYTYEFDKFGNWTKMTTSLVVFENGELK
                     REPTEVTYRTVTYYFDDSVAKAVEEPLKNITVPEPVLREVKQTGILEIEYKEIPASAP
                     EIGSNPPSLSLAKAEAPAPVLNPAMDLYTTGRNRFEAGDVKGAIEAYLQSIKLEPGSA
                     EVFLNLGHAYLKLQKDTDAIKAFRQSLKINPDQPETQYGLGLASFRRAQFQDAVDAFK
                     KAVTLEPKMAKAHYGLTLAYQELGQSRGVIEHYRILERLDKNLARKVALTFPQYNFSC
                     RQMQGCP"
     gene            complement(1708..2478)
                     /locus_tag="VGD38_03235"
     CDS             complement(1708..2478)
                     /locus_tag="VGD38_03235"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0727057.1"
                     /translation="MATATDRQKIAKDNFPVPDSGERKVSLLVVEDDENISTAISEYF
                     SRAGYNVRTVEDGLNGVKAALDDPPDAVVLDLMLPKMDGLAVCKELREKVGYLPILML
                     TAKDDVVDKVLGLEMGADDYITKPFSLRELEARIKSVLRRTRNGPSTDGIRDEAPIVR
                     GRLRIDSAKREVTIGDRQVELTPKEFDLLRLFASNPGRGFPRKYLLEKIWDYSYEGYD
                     RTIDSHINRLRAKIEENPENPQMVLTVWGIGYKFSDEQ"
     gene            2691..3164
                     /locus_tag="VGD38_03240"
     CDS             2691..3164
                     /locus_tag="VGD38_03240"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY0727058.1"
                     /translation="MTPEERNALIKQYASGYDEVIDALNNFPAESLGAHPIPGKWSAR
                     EIVHHLGDSETTSAVRIRRLLCEEQPLIHGYDQDEFATRLRYNERDMAPALEAFRSAR
                     ATTMQLLPMMSEEDWQRAGTHTENGRYSAEDWLRIYADHAHNHAAQIRRLRDALT"
     gene            3260..>3564
                     /locus_tag="VGD38_03245"
     CDS             3260..>3564
                     /locus_tag="VGD38_03245"
                     /inference="COORDINATES: protein motif:HMM:NF013428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEY0727059.1"
                     /translation="MSAATLLQTSLSDLKLVRRGKVRDVYAVDDDSLLIVATDRISAF
                     DCILPTPIQRKGEVLTALSEFWFEKLGHVVANPQITAKIEEMPEAVRRHAQTLQGRA"
BASE COUNT          773 a          987 c          980 g          824 t
ORIGIN      
        1 cgaatagttc agccacagcc ctgtgcaacg aaggttcgat cgaacggcgc ggcgccggaa
       61 tcaaaggatt gaagttgaac gccgcatccg gctccgcgag tgccacgcag atcgcctgca
      121 acccaacgag gtcgttgagc cgcgcgtcga tcagttcgcc ttcctgaaag aaaaacgttg
      181 ccggaccttt cggatactcg atcagcaacc gtccggtctt cttctgatgg cgcagaatgc
      241 cgaccagatc cgatagggga tagttgctga ggtgtccggt caaaactacg aaacgattat
      301 tctgcattac cactcctgca aatctctctg ggcttagggg cagccttgca tctgccggca
      361 cgagaagttg tactgcggaa aagtcagggc cactttccgc gcaaggttct tatcgagtct
      421 ttcgagaatc cggtagtgct cgatcacgcc tcgggattgt ccgagctcct ggtacgcgag
      481 cgtcagaccg taatgggcct ttgccatctt cggttcgagt gtgacggctt tcttaaacgc
      541 atccaccgca tcctgaaact gggcgcggcg aaacgatgcg aggcccaagc cgtactgcgt
      601 ttcgggttgg tcggggttga ttttcagcga ctgcctgaac gccttgatcg cgtcggtgtc
      661 tttctgaagc ttcagatagg cgtggcccag gtttagaaaa acctccgccg aaccgggctc
      721 caacttgatg gattgaaggt aggcctctat cgcgcctttc acgtcgcccg cttcgaagcg
      781 gttgcggccc gtggtgtaga gatccatggc ggggtttaag acaggagccg gggcttccgc
      841 tttggcgaga ctgagcgaag ggggatttga tccgatctcc ggcgcagacg ccgggatctc
      901 tttgtattca atctctaaga tccctgtctg cttgacctcg cgcaacacgg gctctggaac
      961 agtgatgttt tttagcggtt cttccaccgc cttcgccaca ctatcgtcga aataataagt
     1021 aaccgtccga tacgtcacct cggtcggctc gcgcttgagc tcgccgtttt caaacacgac
     1081 cagactcgtc gtcatctttg tccagttacc aaacttatcg aactcatacg tgtacgcctc
     1141 acggctcagg atcgcgccgc gctcatcgcg caacgtcatc tccgtgatgt ttccacgttc
     1201 gtcgtacttg tattcttctt tgcctgcgag cgacccggcg agcgggtagg aagtgttctc
     1261 gatccgattt cccttgatcc cgtaggtggt gacttcaacc agttgcggtg gtccctcgac
     1321 cggatgtccg tccttgatct cgatccgggc agtctccgtc ttaactcgtc gaactgaacc
     1381 gacaagtcca tcttgctctt ttgtactatc aaggacggaa attgcaggac gcgccgaagc
     1441 ggtaacgctg ttttgcgctt taaccggcgc ggtgaaagtc aacacgggcc ccaataagag
     1501 aacagcaggc acaatacggc cttttatgtt catctcgact tcctccagtt tcaaatagcg
     1561 aaacgtgaga caagttagtc ggggggccca ctatcttgta caaactggcg cgaagaatac
     1621 aataagtggg ctcgaaatgc tatggaaaat gtgaaggagt taacgaagga agaataggtc
     1681 ctataggtta tataggaccc ataagaccta ttgctcgtcg ctgaacttgt agccgatgcc
     1741 ccaaacggtc aggaccattt gcgggttctc ggggttctcc tcgatcttgg cgcgcagccg
     1801 attgatgtgt gaatcgatcg tgcgatcgta gccttcgtag gagtagtccc agatcttctc
     1861 gagcaggtac ttgcgcggaa acccgcggcc cggattcgac gcgaagagac gcagcagatc
     1921 gaattctttc ggcgtcagtt caacctggcg gtcgccgatc gtgacttcgc gtttggcgga
     1981 gtcgatgcgc agccggccgc gaacgattgg agcttcgtct cgaatgccgt cggtacttgg
     2041 gccattgcgc gtacgccgca gcaccgactt gatgcgtgct tcaagctcgc gcaggctgaa
     2101 gggcttggtg atgtaatcgt ccgcgcccat ctccagaccg aggactttgt cgacgacgtc
     2161 gtccttggcc gtgagcatca gtattggcaa gtagccgacc ttttccctga gttccttgca
     2221 aactgcgagg ccgtccatct tcggcagcat cagatcgagg accaccgcgt cgggtggatc
     2281 gtccaaagct gctttcacac cgttgagacc gtcttcgaca gtccgcacgt tgtaacccgc
     2341 acgcgagaag tactcgctga tcgcggtcga gatgttttcg tcgtcctcca ctaccagtag
     2401 cgagacctta cgttcgccgg agtcaggtac agggaagtta tcttttgcga ttttctgtct
     2461 gtcagtagct gtagccatca gaatagttag tcgatcggaa ctgacaagca ggaggctcag
     2521 agggcaagca ccacaggggt ctttggcgca actcggttcg cggaggatag tacaggagaa
     2581 ttgcccggct gttcaagccc aaaattgtcc ttttctcctc aactgacccg cacgaagatc
     2641 tttgctatgc tccttgccag tttgacccct attaataaag gaccagaacc atgacacccg
     2701 aagaacgcaa cgccctcatt aaacaatacg cttccggcta tgacgaagta atcgatgcac
     2761 tcaacaactt tccggcggaa agtttaggcg cgcatccgat tcccggcaag tggagtgcac
     2821 gcgagattgt tcatcatctc ggcgacagtg aaacgacctc ggcggtcaga atcagacgac
     2881 tgctttgtga ggagcagccg ttgatccacg gctacgacca ggacgagttt gcgacgcggc
     2941 tgcgctacaa cgagcgcgac atggcgccgg cgctggaagc gtttcgctcg gcgcgtgcaa
     3001 cgacgatgca gttgttgccg atgatgagtg aagaagattg gcaacgcgcc ggaacgcaca
     3061 ccgagaacgg gcgctacagc gccgaagact ggctgcgtat ttacgccgat cacgcgcaca
     3121 atcacgcggc acaaattcgc cgcttgcgcg atgcgctcac ttaaatcaga ctctgtcttg
     3181 acaaagtttt tacgcacgag cacaatccgg atcgactctt actaaaacta aatttcgctg
     3241 ctgggaggca gctatcgaca tgagtgctgc cactctgctg caaacatctc tttctgatct
     3301 caagcttgtc aggcgcggaa aagtccgcga cgtttacgct gttgacgacg atagtttgct
     3361 gatcgtcgcg actgatcgca tctctgcgtt tgactgtatt ctgccgacgc cgattcaacg
     3421 caaaggtgaa gtgttgactg cgctttccga gttttggttt gagaaactcg gtcacgtcgt
     3481 tgcgaaccct cagatcacgg cgaagatcga agagatgcct gaagcagtgc gacgtcacgc
     3541 acagacgctt cagggacgcg cgat
//
LOCUS       DASWTX010000210         2408 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_371557, whole genome shotgun sequence.
ACCESSION   DASWTX010000210 DASWTX010000000
VERSION     DASWTX010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2408)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2408)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2408
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_371557"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..511
                     /locus_tag="VGD38_03250"
     CDS             <1..511
                     /locus_tag="VGD38_03250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727060.1"
                     /translation="IAQHSRAEVDALKLWLGFIDHGDTKTDNHKFACLKSRKEGNTRV
                     CEQGQAVFYVSDMGSTFGHSSSSEKKARLDVWRKKDPIAVSGNEVCTATAKSVGDTSI
                     SEGGRKLLADNLQRLLDAEKQSGTITKVFAASRNGERDRPPAEWTAEFTRKARMIIDA
                     RCSAQVSQK"
     gene            541..>2408
                     /gene="ppk1"
                     /locus_tag="VGD38_03255"
     CDS             541..>2408
                     /gene="ppk1"
                     /locus_tag="VGD38_03255"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR03705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009358 - polyphosphate kinase complex
                     [Evidence IEA];
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006799 - polyphosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HEY0727061.1"
                     /translation="MQSEIPRNKPNRFLAWSVLNRDLAQLEFFKRVLEEATDKSTPVL
                     ERLKFLSVFSSNLDEFFMVRVSGIKEMLPIEDIGPMPGELMPIEQLAAIRNRVLPLIE
                     EQTRCLRDDVLPELAANGVVIAPYETLSKDEKRSLSQYFMKNIFLVLTPQAVDPARPF
                     PYISNLSLNIGLTVEGNPDDTLAGAPIGTEARFVRIKVPPVVPRLIPVNPGELKFALV
                     EEVIEANIHALFPSMHLSKGHLFRVTRDADVEIRDDKAADLLALIKESLRERRFGLPV
                     RLEVESSMPAEMVEYLTKSLRIEPDDVYKIDGLLDVPHLMELYSIDKPELKDKPLKAV
                     APPVMRKSESIFDAIKKQDVLVHHPYTTFATIVDFINSAANDPDVVAIKMCLYRTGKK
                     SPIPQALIQASERGKQVTAVVEIKARFDEEHNIEWAKRLAESGVHVVYGQVGLKTHSK
                     VTLVVRREENGLQTYTHIATGNYNPTTSRLYTDLGLLTSDSVIGDDATDLFNFLTGFS
                     IQKEFSRLLVAPLNLRKRMMELIKRETGHARAGRPAHIMAKINRLTDLPIIEALYEAS
                     QAGVKIDLIVRGACMIRPGEPGLSQTVHVRSIVGSFLEHSRIFYFANGGDEEVYIGS"
BASE COUNT          545 a          661 c          708 g          494 t
ORIGIN      
        1 gatcgcgcag cactcgcgcg cggaagtcga tgcattgaaa ctgtggctcg ggttcatcga
       61 tcacggcgac accaagaccg acaatcacaa gttcgcgtgt ctcaagtcac gcaaggaagg
      121 caacacgcgt gtttgcgagc agggccaggc ggttttttac gtgagcgaca tgggctcgac
      181 gtttggccat tcgagttcca gcgagaagaa agcgcggctc gacgtgtggc gcaagaaaga
      241 tccgatcgcc gtcagcggta atgaagtttg tacggcaacg gcgaagagcg tcggcgacac
      301 gagcatctcc gaaggcgggc gcaagttgct ggccgacaat cttcagcgtc tgctcgacgc
      361 agaaaaacag agcggaacga tcacgaaggt cttcgcggcg tcgcgcaatg gagaacgcga
      421 tcgtccgcct gcggagtgga ccgctgagtt tacgcgcaag gcgcgcatga tcatcgacgc
      481 gcgctgctct gctcaggttt cgcaaaaata gtctcaagga agaactcagg tcagaacgtg
      541 atgcaatcgg aaatacctcg aaacaaacca aaccgttttc ttgcctggtc tgtactcaat
      601 cgcgatctgg cccagttgga atttttcaaa cgcgtgctgg aagaagcgac tgacaagtcg
      661 acgccggtgc tcgaacggtt gaagttcctc tcagtgttct cgtccaacct cgacgaattc
      721 ttcatggtgc gcgtttcggg catcaaggag atgctgccca tcgaagatat tggtccaatg
      781 cccggcgagt tgatgcccat cgaacaactc gccgcgattc ggaatcgagt gctaccgctc
      841 atcgaggaac agacgcgttg tctgcgcgac gacgtgttgc ccgagcttgc cgcgaacggc
      901 gtggtcatcg cgccgtacga gacgctttcg aaggatgaaa aacgcagcct gtcgcagtac
      961 ttcatgaaaa acatttttct ggtgctgact ccgcaggctg tcgatccggc gcgcccgttt
     1021 ccttacattt cgaatctcag tttgaacatc gggctcacgg ttgagggtaa cccggatgac
     1081 acgctcgcgg gagcgccgat cgggactgaa gcgcgcttcg tgcgcatcaa ggtgccgccc
     1141 gtggtgccgc gtttgattcc ggtgaatccg ggcgaactga agtttgcgct ggttgaagag
     1201 gtgatcgaag caaacattca tgcgctgttt ccgagcatgc acctgagcaa ggggcatctg
     1261 ttccgtgtca cgcgcgacgc cgacgtcgag attcgcgacg acaaggccgc ggacctgttg
     1321 gcgttgatca aggagtcgtt gcgcgaacgc cgctttggtt tgccggtgcg tttggaagtt
     1381 gaatcgtcga tgccggccga gatggttgag tacctgacca agtcactccg gatcgaacca
     1441 gatgacgttt acaagatcga cgggctgctc gacgtgccgc atttgatgga gctttacagc
     1501 attgacaagc cggaactgaa ggacaagccg ctgaaagcag tcgcgcctcc cgtgatgcgc
     1561 aagagcgaat cgattttcga cgcgatcaaa aagcaggacg tgctggtcca tcatccgtac
     1621 acgactttcg cgaccatcgt cgattttatt aactcggccg cgaacgatcc tgacgttgtg
     1681 gcgatcaaga tgtgtctcta ccgaacgggg aagaagtctc cgatcccgca ggcgctcatt
     1741 caggcgagcg aacgtggcaa acaggtcaca gcggtggtcg agatcaaggc ccgcttcgac
     1801 gaagagcaca acatcgaatg ggccaagcgg ctcgctgaat ccggcgtaca cgtggtctat
     1861 ggccaggtcg gattaaagac gcattccaaa gtgacactgg tcgtaagacg cgaagagaac
     1921 ggcctgcaaa cttacacaca catcgcaacc ggaaactaca acccgacgac ttcgcggctc
     1981 tacaccgatc ttggtttgct cacgagcgat tcggtgatcg gtgacgacgc cacggatctg
     2041 ttcaactttc tcaccggctt ttcgattcaa aaagaattca gccgtctgct ggttgcgccg
     2101 ctcaacctgc gcaaacgcat gatggagctg atcaaacgtg agactggtca tgcgcgtgcc
     2161 ggacgtccgg cgcacatcat ggcgaagatc aatcgcctga cggatcttcc gatcatcgaa
     2221 gcgctttacg aagcgtcgca ggccggcgtg aagatcgatc tgatcgtgcg tggcgcttgt
     2281 atgattcgtc ccggcgaacc ggggctctcg cagacggttc acgtccgcag catcgtcggc
     2341 agcttcctcg aacacagccg cattttttac tttgcgaacg gcggcgatga agaggtctac
     2401 atcggttc
//
LOCUS       DASWTX010000211         2864 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_350056, whole genome shotgun sequence.
ACCESSION   DASWTX010000211 DASWTX010000000
VERSION     DASWTX010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2864)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2864)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2864
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_350056"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1050
                     /locus_tag="VGD38_03260"
     CDS             <1..1050
                     /locus_tag="VGD38_03260"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-[acyl-carrier-protein] synthase
                     family protein"
                     /protein_id="HEY0727062.1"
                     /translation="VPRTVPLALAAAREALADAQLFPQDMSLDERRAFGVELGTGGGG
                     LAFTEQQYEYWYVGPTNKASVYTIPSSTHGGLSSELSMAFGLRGLSHIVSTGCTSSTD
                     AIAYAAQHIALGRQDLMLAGGVDAPIAPGILAAFNLMTVLTNDWNNEPQRASRPFSRN
                     RSGMVLGEGSWIYVLEELKHAKGRGAQIYGEIIGYGATCDAYHRVRLAEDGSEPARAM
                     RLALQDAGVEPKDIDYVNLHGTSTVLNDRIETSALKLAFDGQAARIPMSATKSQIGHP
                     QGASGAAGLGAALCAMHTNRIPPTINLEEPDPDCDLDYVPNEAREANVKTALCNCIGF
                     GSKNSALVVQRLTEP"
     gene            1055..1756
                     /locus_tag="VGD38_03265"
     CDS             1055..1756
                     /locus_tag="VGD38_03265"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY0727063.1"
                     /translation="MFEKFKRRSYELEHIDTGNYTPEEYEGCISELQLVNRWMGDAHA
                     LKQTLLRDVEQNQLPEFSVLDVGAGSGELLRVAASWAKSTGRSFRGVGLELNERSAQA
                     IREESTNFPEITSVRGDALQLPFAESEFDYVMCSLFTHHFVDEQVVKILREMSRVARR
                     RIFVIDLHRDPVPYFFYTTLGKLVLKNRLLREDGALSILRSFKADELVRLGKAAGLRD
                     LWVEHHFPARLVLSA"
     gene            1753..>2864
                     /locus_tag="VGD38_03270"
     CDS             1753..>2864
                     /locus_tag="VGD38_03270"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY0727064.1"
                     /translation="MKDRYDVIVAGAGPAGSSVAIHLATNGLKVLLVEQKKFPRPKLC
                     GEFISPECQDHFEKLGVARSIICSDPASISETVFYSSRGHQVTVPSNWFGGRMALGLS
                     RAVMDEVLLRRAAEVGVEVIEGATVVGPRTNTDSVHGLRIRIGNEEREFEAPLTIDAT
                     GRARILARKLNNAHKPRPKLIAFKAHFQNTRVAPGACEIYFYKGGYGGLSSIESGESN
                     LCFIIGAEQVKRCNSDPDRVMREMVMHNPRASYTLGHATTSSEWLSASWESFGRQRPA
                     PAKGLLAIGDAAAFIDPFTGSGMLMALESGELAAEVILRHRDRLETTTLAADYTTAYN
                     EKFHARLRLCGLLRRAAFRPRLTEWGVAMFGASERFR"
BASE COUNT          598 a          828 c          865 g          573 t
ORIGIN      
        1 gtcccgcgca ctgttccact cgcgctcgcc gctgcgcgcg aagcactcgc agacgcgcaa
       61 ctgtttccac aagacatgtc gctcgacgag cggcgcgcgt ttggtgtcga actcggcacc
      121 ggcggcggtg gtctcgcttt caccgaacag cagtacgagt attggtacgt tggaccaacc
      181 aacaaagcga gcgtctacac gattccttct tcaacgcacg gtggtctatc gagcgagctc
      241 tcgatggcgt ttggtctgcg tggtctatcg cacatcgttt cgaccggctg cacgagctct
      301 accgatgcga tcgcttacgc cgctcagcac atcgcactcg gacgtcagga cctgatgctc
      361 gccggcggtg tcgacgcgcc gatcgcgccc ggcattctcg ccgcgttcaa cctgatgacg
      421 gtgctaacca acgattggaa caacgaacca cagcgcgcgt cgcggccgtt ctcgcgtaat
      481 cgttccggca tggttctcgg cgagggttcg tggatttacg ttttggaaga actgaaacat
      541 gcgaagggcc gcggcgcgca gatttacggc gagataatcg gctacggcgc gacgtgtgat
      601 gcgtatcatc gcgtgcgtct cgcggaggac gggagcgaac ccgcgcgcgc aatgcgtctc
      661 gcgcttcagg acgcgggcgt cgaaccgaaa gacatcgact atgtaaacct gcacggcacc
      721 tcgacggtgc tcaacgatcg catcgaaacc agcgcgttga agctcgcctt cgacggccag
      781 gcagcgcgca ttccgatgtc ggcgacgaaa tcgcagatcg gtcatccgca aggcgcgagt
      841 ggcgcagcgg gactcggcgc agcgctgtgc gcgatgcaca ctaacagaat tcctccgacc
      901 atcaacctcg aagaacccga tcccgattgt gatctcgact acgttcccaa cgaagcgcgc
      961 gaggcaaacg tcaaaaccgc actctgcaat tgcatcgggt ttggttcgaa aaacagtgcg
     1021 ctcgtggtcc aacgattaac tgagccgtag aagcatgttc gagaaattca agcgccgcag
     1081 ctatgagctc gaacacatcg acacgggcaa ctacacgccc gaagaatacg aaggctgcat
     1141 ttcggagctg caactcgtca atcgctggat gggcgacgcg cacgcgttga aacagacgct
     1201 gctgcgcgac gtcgaacaga atcagttgcc ggagttttcc gtactcgacg tcggcgccgg
     1261 ttcgggcgag ttgttgcgtg tggcggcgag ttgggccaag tcaacgggac gcagtttcag
     1321 aggtgttgga cttgaactaa acgagcgttc ggcgcaagcg atccgtgaag agtcaacaaa
     1381 ttttccggag atcacttcgg tgcgcggcga tgcgttgcag ttacctttcg ccgagtcgga
     1441 atttgattac gtgatgtgct cgctgttcac gcaccacttt gtcgacgaac aggtggtaaa
     1501 aattttgcgc gagatgagcc gtgtggctcg ccggcgcatt ttcgtgatcg atctgcatcg
     1561 cgatccggtg ccgtatttct tttacacgac gctcggaaag ctcgtgttga agaatcgttt
     1621 gttacgcgaa gacggtgcgc tttcgatact gcggagtttc aaagcagacg agctggtacg
     1681 tttaggcaag gctgcggggc tacgcgatct ttgggtcgaa catcatttcc ccgcgcgcct
     1741 ggtgttgagt gcatgaaaga tcgatacgac gtcatcgttg cgggcgctgg tccggcgggc
     1801 agtagcgtcg cgatccatct tgccacaaac ggtctaaaag tcttgttagt ggagcagaag
     1861 aaattcccac gcccgaaact atgcggcgag ttcatctcgc ctgaatgcca ggatcacttc
     1921 gagaagctcg gcgtcgcacg gtcgatcatc tgttccgatc cggcgtcgat ctccgaaacg
     1981 gttttctact cgagccgcgg tcaccaggtc acggttccga gcaactggtt tggtggacgc
     2041 atggcgctcg ggctcagtcg tgcagtgatg gacgaggtgc tgctgcgacg cgcggcggaa
     2101 gttggcgtcg aggttattga aggcgcgaca gtcgttgggc cacggactaa cacagactct
     2161 gtacacggct taagaatcag gatcggaaat gaagagcgag agtttgaggc gccgctcacg
     2221 atcgacgcca ccggtcgcgc acgcatcctc gcgcgcaagc taaacaacgc acacaaacca
     2281 cgaccaaaac tgatcgcctt caaagcgcac tttcaaaaca cacgcgtcgc gcccggcgcc
     2341 tgcgagatct atttttacaa aggcgggtac ggcggactga gcagcatcga atccggcgag
     2401 agcaatctgt gtttcatcat cggcgccgag caggtgaagc gctgcaattc cgatcccgat
     2461 cgcgtgatgc gcgagatggt gatgcacaac ccgcgcgcgt cctacacgct cggccatgcg
     2521 acgacgagct ctgaatggct gagcgcttcc tgggaaagct tcggccggca acgccccgcg
     2581 cccgcgaaag gtctgctcgc gatcggtgac gcggcggcgt tcatcgatcc ctttaccggc
     2641 agcggcatgc tgatggcgct cgagagcggc gaactggccg cggaagtgat tcttcgtcac
     2701 cgcgatcgtc tggaaacaac aacactcgcc gccgattaca caacagctta taacgagaag
     2761 tttcacgcac gtttacggct ttgcggtctg ctgcgccgcg cggcatttcg tccgcgtttg
     2821 accgaatggg gagtggcgat gttcggcgcc agcgagcgct ttcg
//
LOCUS       DASWTX010000212         2370 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_175705, whole genome shotgun sequence.
ACCESSION   DASWTX010000212 DASWTX010000000
VERSION     DASWTX010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2370)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2370)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2370
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175705"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1147
                     /locus_tag="VGD38_03275"
     CDS             <1..1147
                     /locus_tag="VGD38_03275"
                     /inference="COORDINATES: protein motif:HMM:NF013056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEY0727065.1"
                     /translation="VLTATVLICFTMTLLMGLYAKLPFAVAPGMGINAYFTYTVILQQ
                     QVWWQVALGIVFWAGVLFLLISVTPIRETIAKAIPPELRIATAAGIGVFLTFIGLKNA
                     GLVVSDPVTLVKLGVLDRHTLFFAAGMLVTVLLLVRRSALAYLSGIFTVTAITWAAGE
                     IKVPEQIFSPPDFKTVFLKLDIIGALKLSLLPAIIGILFTDLFDSISTFIGVSHSANM
                     LDENGDPRNLRQGLIVDSVATFGAGIAGTSSGTAYIESVAGINSGGRTGLTSVFTALC
                     FLPCFFLAPLAAMVPLNATAPVLILVGAALFKSVGQINFGRIEEGLPAFLTIILIPLT
                     FSITPGILWGFISHVGLYLVTGRRKDVHPVMYVLAVVAMALLWLEHT"
     gene            1164..>2370
                     /locus_tag="VGD38_03280"
     CDS             1164..>2370
                     /locus_tag="VGD38_03280"
                     /inference="COORDINATES: protein motif:HMM:NF012618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727066.1"
                     /translation="MKKFGFTAPLLILVALGTVAGQSPSPTPPDQRGLGIQSATPTPG
                     SQTSSQQARESKPELVLQTGYNNLFGATRLVFSPDGRLLATGTFRSNTIKLWETATNR
                     KLRDLSSSGQSAPFLAPSIAFSRDSRLVAASAADNSVRVWDVNSGREVLSLSGPHGTI
                     SAGFGVYFIGFASGNRLVTVSDAARVWDLNTGRELRTLELNSPATSGYTGSDAGMAIS
                     PDGTQFVMLDDDAEAQARVIDLSSGREVRRVTLSDKPVDTISFAFTPDGRVVAAGVVE
                     KRLKLWDVTAKKDQDLGQTTKDDSQVKFSRDGRLLALSENYVVKIWDVASGRELTQLK
                     VPNSGAFVSQADAFMAFSEDGKRVATGGFDTDTIVWESETGKRVSNLSGRTNMAYNVA
                     FSADGTQLSS"
BASE COUNT          460 a          684 c          697 g          529 t
ORIGIN      
        1 cgtcctgact gcgacggttt tgatctgttt cacgatgacg ttgctgatgg ggctttacgc
       61 gaagctgccg ttcgccgtcg cgcccggaat gggcatcaac gcgtatttca cctacaccgt
      121 aatcttgcag caacaggttt ggtggcaagt cgcactcggc atcgtgttct gggccggcgt
      181 tttgtttctg ctgatctcgg tgacgccgat tcgcgaaacg atcgcgaaag cgattccgcc
      241 ggaactgaga atcgcaaccg ccgcggggat cggtgtgttt ctgactttca tcgggctgaa
      301 aaacgccgga ctggtcgttt ccgatccggt gacgctcgtg aaactcggcg tgctcgatcg
      361 gcatacgtta ttcttcgcgg ctggaatgct cgtcaccgtg ctgttgctgg ttcgccgcag
      421 cgcgctcgcg tacctttccg ggatttttac ggtgaccgcg atcacgtggg ccgccggtga
      481 gattaaagtt ccggaacaga tctttagtcc gcctgacttc aaaacagtct ttctcaagtt
      541 agacattatc ggcgcgctga aactgtcgtt gttgcccgcg attatcggca ttctgtttac
      601 tgatctcttc gactccattt cgactttcat cggcgtctcg cattccgcaa acatgctcga
      661 cgaaaacggc gacccgcgta atttgcgaca gggattgatc gtggattccg tggcgacgtt
      721 tggcgccgga atcgccggca cgtcatccgg caccgcgtac atcgagagtg ttgcgggaat
      781 caacagcggc ggccggaccg ggctcacgtc cgtgttcacg gcgctctgtt ttctgccgtg
      841 cttctttctc gcgccgctgg cggcgatggt gccgctcaac gcgaccgcgc cagtgttgat
      901 cttggtggga gcggcgctgt tcaagagtgt cggccaaata aatttcggca gaattgaaga
      961 aggcctgccc gcgtttttga ctataatcct catccccctg accttttcca tcaccccggg
     1021 aatactctgg ggctttatct cgcacgtcgg cctttatctc gtaaccggca gacgcaaaga
     1081 cgtgcacccg gtgatgtatg tgctggctgt ggtggcgatg gcgttgctgt ggttggaaca
     1141 cacgtgagtt ttaaagaggc attatgaaaa agtttggttt tactgcgccg ctattgattt
     1201 tggttgcgct tggtacggta gcgggtcaat cccctagccc tacaccgccc gaccagcgcg
     1261 gcctgggaat tcagagcgcc actccaacac cgggctcaca aacgtcgtcg caacaagcgc
     1321 gtgaatccaa acccgagctc gttctccaaa ccggttacaa caacctcttc ggcgcaactc
     1381 gcctcgtgtt cagccccgac ggacgactcc tcgcaaccgg cacgtttcgc agcaacacga
     1441 tcaaactgtg ggagaccgca acgaatcgca agttgcgcga tctctcgagc agcggccaat
     1501 cagcgccgtt cctcgcgccg tcgatcgcgt tcagccgcga cagccgtctc gtcgccgctt
     1561 ccgccgcgga caattcggtc agagtttggg acgtcaacag cggccgcgaa gtgttatcgc
     1621 tgagtggtcc acacggaacg atcagtgctg ggttcggcgt gtacttcatc ggcttcgctt
     1681 caggcaatcg tctcgtgact gttagcgacg ccgcgcgagt ttgggatctc aacacgggcc
     1741 gcgaactgcg cacgttggaa ttaaattcac ccgctacgtc cggttacacg ggcagtgacg
     1801 ctggaatggc gatctctccc gacggtacgc agttcgtcat gctcgacgac gacgctgaag
     1861 cccaggcgcg agtgatcgat ctgtcgagcg gccgcgaagt gcgccgcgtg acgttgtcag
     1921 acaaacccgt cgacacgatc agctttgcgt ttacgccgga cgggcgcgtc gttgcggccg
     1981 gcgttgtcga gaagcgtttg aagctttggg atgtaacggc gaaaaaagat caggacctgg
     2041 gccaaacaac caaagacgac agccaggtca aattcagccg cgacggccgc ttgctcgcgt
     2101 tgtcggaaaa ctacgtcgtg aagatttggg acgtcgcgag cggccgcgag ttgacgcagt
     2161 tgaaggttcc aaacagcggc gcgtttgtgt cacaggcgga cgcgttcatg gcgttcagcg
     2221 aagacggcaa acgagtcgcg accggcggtt tcgacactga cacgatcgtt tgggaaagcg
     2281 aaaccggcaa gcgagtttcg aatctgagcg gccgcacgaa tatggcgtac aacgtggcgt
     2341 tcagcgccga cggaacacag ctctcttccg
//
LOCUS       DASWTX010000213         5603 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_328307, whole genome shotgun sequence.
ACCESSION   DASWTX010000213 DASWTX010000000
VERSION     DASWTX010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5603
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328307"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1343
                     /locus_tag="VGD38_03285"
     CDS             <1..1343
                     /locus_tag="VGD38_03285"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GAF domain-containing SpoIIE family protein
                     phosphatase"
                     /protein_id="HEY0727067.1"
                     /translation="LLEAIEGARTQPEEVVTTTTTQPKAKHGDLLALISKVGITLLAS
                     ATLNETLEQIVSLVFEAVPADRCLIMMRDQGSEDLRVAVARLRDRVGEVGEIRVSRNV
                     LDEVVIRGKSVLTSDAQHDPRFASGTMVLQGVRSVLAVPLGVSDKVFGIIYADSPIAE
                     GRFTEDHLKVLTTLASVAAIRVENARLVEARLERERLERELALASEIQQRFQPTAPPH
                     VDGYELQGISFPCYEIGGDYYDFIEREDGRLVIALGDVSGKGTAAALLMSSLHAAIHA
                     QSASHDSLVATISAVNRYLADNIPANRFVTLFYAELDPETGALSFLNAGHNPPLIVHA
                     AGTVEQLASGGLPLGIKPDAEYREGRTRMQQGDVLVIYSDGVTEAVSPTGEEFGATRL
                     YEVVSRNVNASAAGIRDRIESSLTKFAQGTSAADDITLVIVKRQAEAKLSASVG"
     gene            1441..2196
                     /locus_tag="VGD38_03290"
     CDS             1441..2196
                     /locus_tag="VGD38_03290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727068.1"
                     /translation="MVDPDTDIGGAQHRFPETNQSAIVRARSTDHVVRQRAFETILAS
                     YWKPVYKYVRLKWQAGNEDAKDLTQGFFANAFEKNHFANYDASKASFQTFLRTCLDGF
                     VANERKAGARLKRGGDFEHFQFDFVAAEDEFAAHAASTDLTPEDYFHREWVRWMFTLA
                     VEELRRRCENTGKEIQFQLFERYDLADDGAENLSYAVLAQEFGLDTTTVTNYLAAARR
                     DFRRIVIEKLREITATEEEFRNEARSLLGVEVK"
     gene            2193..3188
                     /locus_tag="VGD38_03295"
     CDS             2193..3188
                     /locus_tag="VGD38_03295"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY0727069.1"
                     /translation="MKWISDSRLDHLRELATKPDFSATKYRLLNELASGGMGTVYLAE
                     DTELNRRVAIKVLNTPDPTSDLHQRMVREAQIIAGLEHPGIVPVHDVGMVADGRVFYA
                     MKYVRGSRLDEYAAHTESIGERLRKFRSVCDAVAFAHAHGVIHRDLKPQNIMIGSFGE
                     VLVLDWGVAKILRKQETPVSLEADTLIKNPDDTRHGTVIGTRNYMSPEQARGEINELD
                     ERSDVYSLGAVLYFLLTNRSPSDARPRTLNPKVSKAAEAICLKAMSLERTARYATAAE
                     LSSDIGRLLDAEPVSAYRETVIEKVGRWAGKNRFLILLVLAYLVMRIFLIFTSRS"
     gene            3245..3592
                     /locus_tag="VGD38_03300"
     CDS             3245..3592
                     /locus_tag="VGD38_03300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727070.1"
                     /translation="MSKPLLGVILGAILGAIDGLTAWFTPAVRDQLTGIVIGSTIKGI
                     IAGIAIGFFAKKFHSLPIGILFGAIVGAILAYIIAAMQGGYYFEIILPGTIVGLIVGF
                     ATQKYGSSPQTAS"
     gene            3607..3990
                     /locus_tag="VGD38_03305"
     CDS             3607..3990
                     /locus_tag="VGD38_03305"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY0727071.1"
                     /translation="MPRVVHFEIHAGDPERAVKFYETLFGWSFQKWEGPMEYWMVITG
                     PDDQPGINGGLMRRQGEIDGQAVIAYVCVVDVADVDASLQTALDNGAQLALPKMPIPG
                     VGWLVYCKDTEGNIFGMMQNDPSAG"
     gene            complement(3998..4876)
                     /locus_tag="VGD38_03310"
     CDS             complement(3998..4876)
                     /locus_tag="VGD38_03310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727072.1"
                     /translation="MLLPRPIILAAILVSSLFTAGCLKDAFKQLGELQTLQAALTNKF
                     GGEINVHLSEGVNRVTLSVTFINSPLNDSSRQQRALRAAEAAQIVSAHYSRSTAINWI
                     AVVFLRRQTQFVVFHQAQTLDSFIFEKDGRPTEYTAPYLPAPLTDNEITAGYSPNDDV
                     TDVSSAGTLQLDGEPGGYGITVMPHFKLQGNANRRKAPPPEEVAFLVASYSRKPRFSE
                     PVPVQFIADGKPVMQRAATFTGNDAQYCSIKVSYSAFRKMANAKEAAIKLGAKEYPLT
                     PEQLQLLLKMDAYVLE"
     gene            complement(4899..>5603)
                     /locus_tag="VGD38_03315"
     CDS             complement(4899..>5603)
                     /locus_tag="VGD38_03315"
                     /inference="COORDINATES: protein motif:HMM:NF013292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoaspartyl peptidase/L-asparaginase"
                     /protein_id="HEY0727073.1"
                     /translation="VMENTDHHLIVGKGAQDFARNMGFKIEDDLNTENSRKKWLEWKR
                     RTDPEHYLNPAKRAAAGHRVALEMLAQGILREENLHGTINCDGINAKGEICGVTTTSG
                     LAWKIPGRIGDSPILGAGLYVDGAVGAAGSTGRGEANLFNLCSFVIVEEMRRGAHPKD
                     AGMEVLNRIKANTIEKRLLNSRGLPNFGINFYILNAKGQFAGVTMYEGSSFAICNENG
                     PQTVKSEPLLQGKPSD"
BASE COUNT         1107 a         1505 c         1743 g         1248 t
ORIGIN      
        1 gactgctcga agcaatcgag ggcgcgcgca cgcagccgga agaagtcgtt acgacgacga
       61 caacgcagcc caaagcgaag cacggcgatc tgctcgcgct gatcagcaaa gtgggtatca
      121 cgctgcttgc ttcggcgacg cttaatgaaa cgttggaaca gatcgtttcg ctcgtgtttg
      181 aagcggtgcc tgcggatcgt tgtttgatca tgatgcgcga tcagggtagc gaggatctgc
      241 gcgttgccgt ggcgcgtttg cgcgatcgtg ttggtgaagt cggagagatt cgcgtgagcc
      301 gcaacgtgct tgatgaagtt gtgattcgcg ggaagtcggt gttgacgtcg gacgcgcagc
      361 acgatccgcg ttttgcgagt ggcacgatgg tgttgcaggg cgtgcgatcg gtgttggcgg
      421 tgccgctcgg cgtgtcggac aaggtgttcg gcatcatcta cgcggattcg ccgattgcgg
      481 aaggccggtt tactgaggac cacttgaaag ttttgacgac gctggcttcg gttgcggcga
      541 ttcgtgtgga gaacgcgcgg ttggttgagg cgcgtttgga gcgtgagcgg ctcgagcgtg
      601 agttggcgtt ggcgagtgag attcagcagc gttttcaacc gactgcgccg ccgcacgtcg
      661 atgggtacga gcttcagggc atcagttttc cgtgttacga gatcggcggc gactattacg
      721 acttcatcga gcgtgaagac gggcggttgg tgattgcgct tggcgacgtg tcgggtaagg
      781 gaactgcggc ggcgttgttg atgtcgtcgt tgcacgcggc gatacacgcg cagtctgcgt
      841 cgcacgattc gctggttgcg acgatctcgg cggtcaatcg ttatctggcg gacaacattc
      901 ccgcgaatcg tttcgtgacg ttgttttatg cggagctcga tccggaaact ggggcgttgt
      961 cgtttttgaa cgccgggcac aatccgccgc tgatcgtgca tgctgcaggg actgtggagc
     1021 agcttgcgtc gggaggtttg ccgctcggta tcaagccgga tgctgagtat cgtgagggac
     1081 gcacgcggat gcagcaggga gacgtgctgg tgatctactc ggatggagtg actgaagcgg
     1141 tgagcccgac tggtgaagag tttggcgcga cgcgtttgta tgaagttgtc tcgcgcaacg
     1201 tcaacgcctc ggccgcggga atccgcgatc gcatcgagtc gtccctaaca aaattcgcgc
     1261 agggcaccag cgccgccgac gacatcaccc tcgtcatcgt gaagcgccag gcggaagcta
     1321 aattaagcgc cagcgtcggc tgacgtgaat tagcgtgact gccgctaggt tgaggctgtt
     1381 ttggctttgg gattgacgac ctcgcgcaag cgggtcaatc ccacccaccg ggccgtggag
     1441 ttggtcgatc cagacaccga tatagggggc gcgcagcatc gctttcccga gacgaaccaa
     1501 tcggcgatcg tgcgcgcgcg cagcacggac cacgtcgtgc ggcaacgcgc gttcgagacg
     1561 attctcgcga gctactggaa accggtgtac aagtacgtgc gcctcaagtg gcaggccggc
     1621 aacgaggacg cgaaagacct gacgcagggc ttctttgcga acgccttcga gaaaaatcat
     1681 ttcgcaaact acgacgcttc caaagcgagt tttcaaacgt tcctgcgcac gtgtctcgac
     1741 ggcttcgtcg ccaacgaacg aaaggccggc gcgcgcctca aacgcggcgg cgacttcgaa
     1801 cactttcaat tcgacttcgt cgctgcggaa gacgagtttg ccgcgcacgc agcgtcgact
     1861 gatttaactc ccgaagatta ctttcatcgc gagtgggtgc gctggatgtt cacgcttgca
     1921 gtcgaagagt tacgccgtcg ttgcgaaaac acagggaagg aaattcagtt tcaactgttc
     1981 gagcgctatg atctggcgga tgacggcgcc gagaaccttt cgtacgcagt gctggcacag
     2041 gagtttggcc tcgacacaac aaccgtcact aactacctcg ccgcggcccg ccgcgacttc
     2101 cgccgcatcg tgattgaaaa gctgcgcgag atcaccgcca ctgaagaaga gtttcgcaac
     2161 gaagcgcgtt cgctgctcgg agtcgaagtg aaatgaagtg gatttccgat tcccggttgg
     2221 accatcttcg cgagctcgcg accaagcccg attttagtgc gacgaagtac cggctactca
     2281 acgagctcgc ttccggcggc atgggcactg tttatctcgc tgaagacacc gagctcaacc
     2341 gccgcgtagc aatcaaagtc ctcaacactc ccgatccgac gagcgatctg catcaacgca
     2401 tggtgcgcga ggcgcagatc atcgcgggac tcgagcaccc cggaatagtt cccgtgcacg
     2461 acgtcggcat ggtcgccgac gggcgtgttt tctacgcgat gaagtacgtc cgcgggagtc
     2521 gtttggatga gtacgccgcg cacaccgagt cgatcggcga gcgtttgcgc aagtttcggt
     2581 ctgtttgtga cgcagtcgcg tttgcgcacg cgcacggcgt gattcatcgc gacttgaaac
     2641 cgcagaacat catgatcgga tcgttcggcg aagtgctcgt gctggattgg ggcgtcgcga
     2701 agatactgcg aaagcaggaa acgcccgtat cgcttgaggc cgacacgttg atcaaaaatc
     2761 ccgacgacac gcgccacggc accgttatcg ggacacgcaa ttacatgtcg ccggaacagg
     2821 cgcgcggcga gataaacgag ctcgacgagc gttccgacgt ctactcactc ggcgccgtgc
     2881 tctatttcct gttgacgaat cgttcaccgt cggacgcgcg gcccagaacg ttgaatccga
     2941 aggtcagcaa agcagccgaa gccatttgcc tgaaagcgat gtcgttggaa cgcacggcgc
     3001 gttacgcaac cgccgcggag ttatcgagcg acatcggccg gttgctggac gcggagcccg
     3061 tgtccgcata ccgggagacc gtgatcgaga aggtcggccg ctgggccggc aagaaccgtt
     3121 tcctgatact tttggtgctc gcctatctcg tgatgagaat ttttctgatt ttcacgtctc
     3181 gcagttaaag atttttcacc gcccgtttaa tagaagagta gatagctaac gaaggagaac
     3241 gaaaatgtcc aaacccctgc ttggtgtaat actcggcgcg atactcggcg ccatcgacgg
     3301 actcaccgcg tggttcaccc ccgccgtgcg cgatcagctt accggcatcg tgatcggctc
     3361 gaccatcaaa ggcatcatcg ccggcatcgc gatcggtttc tttgcgaaga agtttcactc
     3421 gctgccgatc gggattctgt ttggcgcgat agtgggcgcg attttggcct acatcatcgc
     3481 cgcgatgcag ggtggctact atttcgagat cattctgccg ggcacgatcg tcggtctgat
     3541 cgtcggcttt gcaacgcaga agtacggatc gagtccacaa accgcttcat aaaaggagac
     3601 tattcaatgc caagagttgt tcacttcgag attcacgccg gcgatccgga acgtgcagtt
     3661 aagttttacg agacgctgtt tggttggagc tttcaaaaat gggaaggccc gatggagtac
     3721 tggatggtca tcactggtcc ggacgatcag cccggcatca acggcgggtt gatgcgtcgc
     3781 cagggggaaa ttgatggtca ggcggtgatt gcttacgtct gcgttgtcga cgttgcggat
     3841 gttgatgcgt cgttgcagac ggcgctcgat aacggcgcgc agctcgcgtt gccgaagatg
     3901 ccgattcccg gtgtgggttg gctggtctac tgcaaggaca cggagggaaa cattttcggg
     3961 atgatgcaga acgatccgtc agcgggttag cggcgggtca ttccaaaacg taggcatcca
     4021 ttttcagcag cagttggagc tgttcgggcg tcaggggata ctctttggcg cccagtttta
     4081 ttgccgcttc tttggcgttc gccatcttgc gaaacgctga atacgaaacc tttatagaac
     4141 agtattgtgc gtcgttgccg gtaaaggtcg ctgctcgttg catgacgggt tttccatctg
     4201 cgatgaactg gaccgggacc ggttcgctga agcgcggttt cctggaatac gaagcgacga
     4261 ggaatgcaac ttcttccggt ggcggggctt ttcttcggtt ggcgttgcct tgaagtttga
     4321 agtgcggcat gacggttatt ccataaccgc cgggctcgcc gtcgagttgg agtgtgccgg
     4381 cggaggagac gtcggtcacg tcatcgttcg gggagtaacc ggcggtgatt tcattgtcgg
     4441 tcaacggcgc cggcaagtat ggagcggtat actccgtggg ccgtccgtcc ttttcgaata
     4501 tgaagctgtc caaggtttgg gcctggtgaa atacgacgaa ctgagtttgt cggcgcagga
     4561 agaccacggc gatccaattg atggcagtcg agcgtgaata atgcgcgctg acgatttgcg
     4621 cggcttccgc cgctcgcaga gcgcgctgtt gccgggagct gtcgtttaac ggggaattga
     4681 taaacgtgac gctcagcgtt acacgattca cgccctcgct aaggtgaacg ttaatctcgc
     4741 cgccaaactt gttcgttaat gcggcttgaa gtgtctgcag ctcgccaagc tgcttgaagg
     4801 cgtcctttag acagcccgct gtgaacaggg atgaaaccag aatcgcggcg aggattattg
     4861 gacgtgggag gagcattttg tatttttatg cgagcctgct aatcgctcgg cttgccctgg
     4921 agcagcggct ctgacttcac ggtctgtggg ccgttctcgt tgcagatcgc aaacgaactt
     4981 ccttcgtaca tcgtgactcc ggcaaattgg cccttcgcgt tgaggatgta gaagttgatg
     5041 ccgaagttgg gcagtccgcg gctgttcaag agccgcttct cgatcgtgtt cgccttgatg
     5101 cggttcaaca cttccatgcc cgcgtctttc ggatgcgcac cacgacgcat ttcctcgacg
     5161 atcacaaacg aacacaggtt gaaaagattc gcttcaccgc gtccggtcga tcctgcagcg
     5221 ccgacagcgc cgtcgacgta aagcccggcg ccgagaatcg gtgagtcgcc gatgcggccc
     5281 ggaatcttcc acgcgagccc gctcgttgtg gtgacaccgc agatctcacc cttcgcattg
     5341 atgccgtcgc aattgatagt gccgtgcaga ttttcttcgc gcagtattcc ctgcgccagc
     5401 atttccaacg ccacgcggtg tccggccgcg gcgcgtttgg ccgggttgag gtagtgctcg
     5461 ggatcggtgc gacgtttcca ctcgagccat ttcttgcgcg agttctccgt gttgagatca
     5521 tcttcgatct taaaacccat gttgcgcgcg aaatcctgcg cgcctttgcc cacgatcagg
     5581 tgatggtccg tgttctccat cac
//
LOCUS       DASWTX010000214         1748 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_328347, whole genome shotgun sequence.
ACCESSION   DASWTX010000214 DASWTX010000000
VERSION     DASWTX010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328347"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1178
                     /locus_tag="VGD38_03320"
     CDS             <1..1178
                     /locus_tag="VGD38_03320"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY0727074.1"
                     /translation="LLLMIMDVERAQTPIRLLIVAPSLNILGGQAVQAKYLFEHLSSE
                     PQFEVGFLAHNPRLPGPFRILQRIKYVRTIVTSALYCLNLLRTVPKYDIIHVFSASYF
                     SFLLAPTPAIFVARFFGKKVVLNYRSGEAEDHLRSWPRTAVPIISLADELIVPSRYLV
                     HVFRKFGLRAHAIFNMIDHDRYRFRERKPLRPIFLSNRNLYPLYNVACIVRAFAKIQE
                     KYPDAKLTIAGNGSQRPALEDLVRRLKLRNVEFRGLVPPEKMSELYDQADIFLNSSNI
                     DNMPGSILDSFAAGMPVVTTSAGGICCIVTHEKTGLLVPKNDHEAMAADAIRLLESPE
                     FAAEIARNAHEECQAYQWSAVRDAWVSAYTRLAGREATESVALPVTDSSSLQRVEEG"
     gene            1178..>1748
                     /locus_tag="VGD38_03325"
     CDS             1178..>1748
                     /locus_tag="VGD38_03325"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HEY0727075.1"
                     /translation="MTICNASKTGNGVKAPTVTVVIPSYNNARYIGQTRDSIKAQTFS
                     DYEVIVVNDGSADREELEKVLESHPLPVIYISQENKGVSAARNAAIRIARGEFYAQLD
                     ADDQWTPDYLEVQLGILRDNPDVALVYPNARIIGDDAPGELEFMNVSPSEGEVTFESL
                     VRQRCVVLTCVTARMRVIREAGMFDEGLRS"
BASE COUNT          377 a          472 c          520 g          379 t
ORIGIN      
        1 gactgctcct gatgataatg gacgtggaac gtgcacaaac accgataagg ctgctgatag
       61 ttgcgccgtc gttgaatatc ctcggcggtc aggctgtgca ggcgaagtac ctgttcgagc
      121 atttgagcag cgagccgcaa tttgaggtag ggttcctcgc gcacaatcca cgcttgcctg
      181 gtccattccg gattctgcag cggatcaagt acgtgcgcac gatcgtgacg tccgcgcttt
      241 actgcctgaa cctgctgcga acggttccca agtacgacat catccacgtt ttctcggctt
      301 cgtatttttc ttttctgctg gcgccgactc cggccatctt tgtcgcgaga tttttcggaa
      361 aaaaagtggt cttgaactac cgcagcggcg aggctgagga ccatctcaga tcctggccac
      421 ggacggctgt gccaatcatc agcctggctg acgaactgat cgttccgtcg cgttatctcg
      481 tccacgtgtt ccgcaagttt ggtttgcgcg cgcatgcgat cttcaacatg atcgatcacg
      541 atcgataccg gtttcgtgag cgcaagcctt tgcgaccgat ctttttgtcg aaccgtaatc
      601 tctacccgtt gtacaacgtg gcttgtatcg tgcgcgcatt cgcgaagatc caggagaagt
      661 atccggacgc gaagctgacg atcgcgggaa acggcagcca acgaccggcg ctcgaagacc
      721 ttgtacggcg cctgaaactg aggaacgtgg aatttcgcgg gctcgtgccg cccgagaaga
      781 tgagcgagct ttacgaccag gcagacatct ttctcaacag ctccaacata gacaacatgc
      841 cgggctcgat acttgattcg tttgcggcgg gcatgccagt tgttacgacc agcgcggggg
      901 gaatctgctg catcgtgacg catgaaaaaa caggtttgtt agtgccgaaa aacgatcacg
      961 aagcgatggc cgcggacgcg atccggttgt tggagtcccc ggagtttgcg gcggagatcg
     1021 cgcgtaacgc gcacgaggaa tgtcaggctt accagtggtc ggcggttcgc gatgcgtggg
     1081 tgagtgcgta cacgcgtcta gccggtcgag aagcgaccga gagcgtggct ctgcccgtga
     1141 cagattccag ctcgttgcaa cgggtcgaag aaggctgatg acaatttgca atgcgagcaa
     1201 aacgggtaac ggtgtgaaag ctccaaccgt aacggttgtg attccttcgt acaataacgc
     1261 gcgttacatc ggccagacgc gtgactcgat caaagcacag accttcagcg actacgaagt
     1321 gatcgtcgtc aacgatggct cagcggatcg cgaggagctc gaaaaagtac tcgagtctca
     1381 cccgttgccg gtcatctaca tctcccagga aaacaagggc gtgagcgcgg cgcgaaacgc
     1441 ggctatccgt atcgcgcgcg gagagttcta cgcgcaactc gacgcggacg accagtggac
     1501 tcctgactac ctcgaagtgc agctcggaat tcttcgcgat aaccctgacg ttgcgctcgt
     1561 ctatccaaac gccagaatca tcggcgacga tgcgcccggt gagctcgaat tcatgaacgt
     1621 gtctccgtcg gaaggtgagg ttacgtttga aagcctggtg cggcagcggt gcgttgtgct
     1681 gacctgcgta acggcgcgaa tgcgcgtgat tcgcgaggcg gggatgtttg acgaaggtct
     1741 tcgtagtt
//
LOCUS       DASWTX010000215         1898 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_2007, whole genome shotgun sequence.
ACCESSION   DASWTX010000215 DASWTX010000000
VERSION     DASWTX010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1898)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1898)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1898
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2007"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..378
                     /locus_tag="VGD38_03330"
     CDS             <1..378
                     /locus_tag="VGD38_03330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727076.1"
                     /translation="IFGGGMGRRPTRGRGTSRGDYELGDHYLQELANTTGGRGYRADS
                     LQNMSFAFANVAEELRRQYSIGYYPKRPLQAGQRRMIKVRAKQPNLAVRARDSYVFNP
                     SGTSVVNNDPQQPNAPVLKRNSF"
     gene            complement(375..>1898)
                     /locus_tag="VGD38_03335"
     CDS             complement(375..>1898)
                     /locus_tag="VGD38_03335"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0727077.1"
                     /translation="GKLSSTEIPELAALFISLFIVVLFVFGGWFPGPVKTYPLAYWCL
                     PFLLWAALKFDQRIVTTAIVVMAAVAVWGAKQGYGPFVQSNPNVSLLLLISFVGTTSL
                     TTLIVGAVTNERQTAEAAKDKLGSELKIHQERIEDIVAHVPGVVWEAWGKPDTANQRI
                     DFVSSYVEKMLGYSSDEWLSTPNFWLQVVHPEDRERAAAEAAAIFASGKGGSSRFRWM
                     HKDGHEVWVEARSMVVCDESGPIGMRGVTMDITPAVRAEIERGELLRRERHAREEAEE
                     ASRLKEEFLATVSHELRTPLNAVVGWSRLLRAGQLDADGAAHAIEIIERNALMQKQIV
                     EDLLDVSRIITGKLRINTQPVDLLLVIHAAIDAIRPAAEAKEIEIRMHFESPDVIVKA
                     DVERLQQVFWNLLANAVKFTPARGVVDVYLREQDGLAEVRIEDSGPGVPPDFLPRIFE
                     RFSQADGSSTRKHGGLGLGLAIVRHLVELHGGTVSAGNRDENGGAILTVLLPRTTQI"
BASE COUNT          422 a          630 c          477 g          369 t
ORIGIN      
        1 atttttggcg gcggcatggg acgccgtccg acgcgcggcc gtggcacctc gcgcggtgat
       61 tacgaactcg gcgatcacta tcttcaggag ctcgcgaata cgaccggcgg acgcgggtat
      121 cgcgccgaca gtctgcagaa catgtcgttt gcgtttgcga acgtggcgga agaattgcgg
      181 cggcagtaca gcatcggtta ctacccgaag cgtccactgc aggcgggcca gcggcgaatg
      241 attaaagtgc gcgccaaaca accaaatctc gcggtgcgcg cgcgcgacag ttacgttttc
      301 aatccgtcgg gtacgtccgt ggtgaacaac gatccgcagc aaccaaatgc accggtgctg
      361 aaacgaaact cgttttaaat ctgtgtagtt cgcggcagca agaccgtaag aattgcgccg
      421 ccgttttcat ctcgattacc ggccgaaacc gtgccgccgt gaagctcgac gaggtgccgc
      481 acgatcgcca gtcccaatcc caatccgccg tgctttcgcg tgctcgaccc gtcggcctga
      541 ctgaagcgct caaagatgcg cggcagaaaa tccggcggca cacccggtcc tgagtcttca
      601 atcctgacct ccgccagccc atcctgttct cgtaaataaa cgtcaaccac gccacgcgcg
      661 ggcgtgaact tcaccgcgtt agccaacagg ttccaaaaca cctgctgcaa tcgctcaacg
      721 tctgccttga cgatcacatc cggcgactca aagtgcatcc gtatctcaat ctccttcgct
      781 tccgccgcgg gccgaatcgc atcaatcgcc gcgtgaatca cgagcaacag atccaccggc
      841 tgcgtgttga tgcgcaactt gcccgtgatg atgcgtgaca cgtcgagcag gtcttcgacg
      901 atctgtttct gcatcagcgc gttccgctcg atgatctcga tcgcgtgcgc cgcgccgtcc
      961 gcatcgagtt gtcccgcacg caacaatcgc gaccaaccaa cgacggcatt cagcggcgtc
     1021 cgcagttcgt gagaaaccgt cgcgagaaac tcttccttca accggctcgc ttcctcagcc
     1081 tcttcacgcg cgtgacgctc gcgccgcaac agttcgccgc gctcgatctc cgcgcgaacc
     1141 gccggcgtga tgtccatcgt cacaccacgc atcccgatcg gaccactttc atcacaaaca
     1201 accatcgacc gcgcttcgac ccagacttca tgcccgtcct tgtgcatcca gcgaaaacgg
     1261 ctgctgccgc ctttacccga agcaaagatc gccgccgctt cagccgcagc acgttcacga
     1321 tcttcgggat gaacaacctg caaccagaaa ttcggcgtcg acaaccattc gtcactgctg
     1381 tagccgagca tcttctcgac gtacgaactg acgaaatcga tgcgttgatt cgcggtatca
     1441 ggttttcccc acgcttccca caccacaccg ggaacatgcg cgacgatgtc ttcaatccgt
     1501 tcctggtgaa tttttaattc cgaaccgagt ttgtctttcg cggcttccgc tgtttgccgt
     1561 tcattcgtaa ccgcgccaac gatcagtgtc gtcaacgacg tcgtgccgac aaacgagatc
     1621 agcaacaaca gcgaaacgtt cgggttcgat tgcacgaatg gtccataacc ctgcttcgct
     1681 ccccacaccg ccaccgccgc catgaccacg atcgccgtcg tcacgattcg ctggtcaaac
     1741 ttcaacgccg cccacagcaa aaacggaaga caccagtaag cgagtggata tgtcttcacg
     1801 ggtcccggaa accaaccgcc gaagacgaac agcacgacta tgaaaagaga aatgaaaagc
     1861 gccgcaagct cgggaatctc agtcgagctc aacttccc
//
LOCUS       DASWTX010000216         5151 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_393205, whole genome shotgun sequence.
ACCESSION   DASWTX010000216 DASWTX010000000
VERSION     DASWTX010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5151)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5151
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_393205"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..223)
                     /locus_tag="VGD38_03340"
     CDS             complement(<1..223)
                     /locus_tag="VGD38_03340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727078.1"
                     /translation="MKPVFRDNKNSPDDLLWAIVDACISNVAVLDETGSLIYASRAWS
                     CFEQVDNTGAGATYFESCRRYTESESDESA"
     gene            complement(265..618)
                     /locus_tag="VGD38_03345"
     CDS             complement(265..618)
                     /locus_tag="VGD38_03345"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase family
                     protein"
                     /protein_id="HEY0727079.1"
                     /translation="MKRAVLRSSAIRVASETKMIVNTTRITVPPEKRTEFLQTIGRLL
                     EPSKRAKGCSTFDFYLDASDENSTLLVSEWETETDLNNYLESDDFAVLRGAITVLSAR
                     SIDSKASVTSHVYVP"
     gene            complement(854..2443)
                     /locus_tag="VGD38_03350"
     CDS             complement(854..2443)
                     /locus_tag="VGD38_03350"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HEY0727080.1"
                     /translation="MGPSLSDWQWIIAVVILLQALLIIGLLIGSARKRHALAKAAEQQ
                     KALHETEERFRTTVDTAPAMIWIVGTDMNCTYVNQRWLDFTGRTEEQELGTGWTEAIH
                     ADDYERSLKTYESSFKAKQPFEMEYRMRRHNGEYRWIIDTGVPRFGSDGEFLGYIGSC
                     VDITERKESEVALQTAHEELHQLKNQLEAENISLQQELQLDDKFGEIVGQSDAIKYVL
                     FKVTQVAPTNTTVLITGETGTGKDLFARAIHGASSRKDKPLIKVNCGALSPTLIESEL
                     FGHEKGAFTGAIARKLGRFELANGGTIFLDEIGELPPELQVKLLRVIQESEFERIGGS
                     KTMKVDVRIIAATNRNLKLEVEKGAFREDLWYRLNVYPITVPPLRQRREDIPQLVEHF
                     TSIYAKKAGKTIASISPRAIQSLEVHSWPGNVRELANVIERAVIHTQGSVLQLVDHWE
                     PVVTEPGATQTLEEVERDYIIRTLEKTGWRIEGKSGAATVLGLNPSTLRTRMLKLGIQ
                     RRRANFVAATAQDPRTTTTTN"
     gene            complement(2598..4958)
                     /locus_tag="VGD38_03355"
     CDS             complement(2598..4958)
                     /locus_tag="VGD38_03355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727081.1"
                     /translation="MQLALISILLFVFPWFAPAPVQQAGQTRAQSRTASDRGWPRGYS
                     LPSEAQIVLYQPQIASWENQKTLIAFSAVSYVAKGEQKPALGTLKFQTDTEVALEQRL
                     VKFSKIKIIETNFQTLSKEQTQEIVSELEKNIPEEDRIIDLDRVLAYVDKSTINPKNV
                     EGLKSDPPRIILTYSPSILVSFDGQPIWSPIKDNELKFAVNTNWDIFQHQPTGMYYLR
                     YDTSWLRATDLQGFWSRAGKLPDSFNKLPEDDNWKDVRASRPGQPAKTLPKVYVTNDP
                     SELILIDGQPKYEPVPNTGLLWISNTESDLFRLGKDGPVYYLVAGRWFMAPGLGGHWT
                     FATPSLPEDFKRISLEHPRSRVLASVPGTQQAAEAVLLAEIPQYARVNKKEIKAPDVA
                     YNGEPQYENISGTQLQRAANTDKEIVKVGDTYYMCYQGVWFMANNPNGPWTLATSVPQ
                     DIYKIPPSSPSHSVTYVTVAEDDDDDDDWVTYAAYAGYTGLMVGWGCTVWGTGWYYPP
                     YYWYGGYYPIYYPYWRTYGYGAWYNPYTGVYGTAGRIYGPYGGVGFGARYNPSTGTYA
                     RGAFAYGPYGARGAAQAYNPRTGTYAATRQGSNVYGSWGSTHLQRGDDWVNTKRFTNS
                     AGNTTRVTRGDQGGMISRRGPDGGGFVGTRGDNVYAGRDGNVYRRDQNGNWQKWENGS
                     WNSPNRAEQRNSSVRDSMLNDRARQENRANGDRIGNSSRPSQGDRGTINSLERDRAAR
                     SNGSQRSRDFGSYSRSPNRGSVGGYRGGGGFSRGGGGFRGGGGRRR"
BASE COUNT         1001 a         1472 c         1435 g         1243 t
ORIGIN      
        1 cggcactttc gtccgattca gactccgtgt acctgcgaca gctctcgaag taagtcgcac
       61 cagcgccggt gttgtcgacc tgctcgaaac aactccacgc tcgactcgca taaatcagcg
      121 aacctgtttc gtcgagcacc gcgacattgg aaatacacgc gtcgacaatc gcccatagca
      181 ggtcatccgg tgaatttttg ttgtcccgga agaccggctt caatactttt ttgacggaag
      241 tcgagaccat attaatgttc aacgttacgg aacgtagacg tgcgaagtga cgctggcctt
      301 tgaatcgatg ctgcgcgcac tcaacacggt tatcgctccg cgcagcaccg cgaaatcatc
      361 cgactcgagg tagttgttca aatcggtttc cgtttcccac tcgctgacga gcaacgtcga
      421 attctcgtct gacgcgtcga gatagaaatc aaatgtgctg caacccttcg cgcgcttgct
      481 cggttcgagc aggcgtccga tcgtttgcag aaactccgtc cgcttctccg gtggaacggt
      541 tatcctggtg gtgttcacga tcatcttcgt ctcactagcg acacgaatag ctgacgagcg
      601 caacactgcg cgtttcaaat ctcagttgtc tggttgctta aggcgtccgg caacaatgag
      661 gggcgacaca aatgatgctg gatgccttta cctgagcaag cggtgtgcac aaacgcacag
      721 accagagaca aacaggcgtt ttccctaatt tttattgaat tttttgtacg ccagcgtacg
      781 ctgcgaggct cttgccgtgg gaagccgtgg ccgttgtatt tcgcggaaac tgtgaaacta
      841 cgtggaggaa cgttcagttc gtggtcgtgg tagttcgcgg gtcttgagcg gtcgcggcga
      901 cgaagtttgc gcgccgccgc tgtattccga gcttgagcat tctggtccgc agcgtactcg
      961 gattcaatcc cagcaccgtc gccgcgccgc tcttgccctc aattcgccaa ccggtctttt
     1021 ctagtgtgcg aatgatgtag tcgcgttcga cttcttcgag cgtctgcgta gcgcctggtt
     1081 cagtaacaac gggttcccag tgatcgacga gttggagtac gctcccctga gtatggatca
     1141 ccgcgcgttc aatcacgttt gccaactcgc gcacgttgcc gggccacgaa tggacctcca
     1201 gactctggat cgcccgcggc gagatcgacg cgattgtctt gcccgccttc ttcgcgtaga
     1261 tgctcgtgaa gtgttccacc agttgcggga tgtcctcgcg gcgctgtcgc agcggcggca
     1321 cggtgatcgg gtagacgttc aaccggtacc agagatcttc gcggaaggcg cccttttcga
     1381 cttcgagttt caggttgcgg ttggtggccg cgatgatgcg gacgtcgacc ttcatcgttt
     1441 tactgccgcc gattctttca aactcgcttt cctgaatgac gcgcagcaac ttcacttgca
     1501 gttccggcgg cagctcgccg atctcgtcga gaaagatcgt gccgccgttt gcgagctcaa
     1561 aacgccccag tttgcgcgcg atagctccag tgaacgcgcc tttttcgtga ccaaacaact
     1621 cgctctcgat cagcgtcggc gacaacgcgc cacagttcac ctttattaaa ggcttgtctt
     1681 tgcgcgagct cgcgccgtga atcgcgcgtg cgaacaggtc cttgcccgtg cccgtctcgc
     1741 ccgtgatgag cacggtggtg ttcgtcggag cgacttgagt gactttgaaa agcacgtact
     1801 tgatcgcgtc gctctggccc acgatctcgc cgaacttgtc gtcgagttgc agctcctgtt
     1861 gcaacgagat gttttccgct tccaactggt ttttcagttg atgaagctct tcgtgcgccg
     1921 tctgcagcgc gacttccgac tctttgcgct cagtgatgtc gacgcaggaa ccgatgtaac
     1981 cgagaaactc accatcgctg ccaaaccgtg gaacacccgt atcgattatc cagcgatact
     2041 cgccgttgtg gcggcgcatc cggtattcca tttcaaatgg ttgtttcgcc ttgaagctgc
     2101 tctcgtaagt ttttagagaa cgttcgtaat cgtccgcatg aatggcctcg gtccaaccgg
     2161 tgcccagctc ctgttcttca gttcgcccgg tgaagtcgag ccagcgctga ttcacgtagg
     2221 tacagttcat gtccgtaccg acgatccaga tcatcgcggg cgcagtgtca actgtggttc
     2281 ggaaacgctc ttcggtctcg tgcagcgcct tttgctgctc tgcggcttta gccagagcgt
     2341 ggcgttttct ggcgctgccg atcagcaggc cgattataag aagtgcttga agaagaatga
     2401 ctacggcaat gatccattgc cagtcagata gagacggtcc catcactaca cacctgaggc
     2461 tccgttatcc tctcagattc ctcagagtgc tcgggacgta aacactttcg tcggggagag
     2521 ggattccagt gcagtctaac acgtcgataa ttgcgatcgt atacagtttc tcgtcccgaa
     2581 ggaccttgta ggatccttca gcggcggcgg ccaccaccgc cgcgaaaacc acctcctccc
     2641 ctactaaagc cgcctcctcc gcggtaacca cctacactgc cacgattcgg actgcggcta
     2701 tagctgccga agtcgcgact gcgttgcgag ccgttgctgc gtgcagcacg atctcgctcg
     2761 agactgttga ttgtcccgcg atcgccttgc gatgggcgcg atgagttacc gattcgatcg
     2821 ccgttcgctc gattctcctg gcgggcgcga tcgttcaaca tgctgtcgcg cactgaagag
     2881 tttcgctgtt cggccctgtt cggagaattc cagctaccgt tttcccactt ctgccagttt
     2941 ccattctgat cgcggcggta aacgtttccg tcacggccgg cataaacgtt atcaccgcgc
     3001 gtgccgacaa agccgccgcc gtcaggtcca cgccgcgaga tcatgccgcc ctgatcgccg
     3061 cgagttacgc gtgtcgtgtt gccggcgctg ttcgtgaatc gtttcgtgtt tacccagtca
     3121 tcgccacgct gaaggtgtgt cgatccccaa ctgccgtaca cattggagcc ctgacgcgtc
     3181 gccgcatagg ttcccgtgcg cgggttgtat gcctgcgcgg ccccgcgcgc gccgtatggt
     3241 ccataggcaa aagccccccg cgcgtatgtt ccggtgctgg ggttataacg agcaccgaaa
     3301 ccgacgccgc cgtatggtcc atagattctg ccggctgttc cgtaaacgcc ggtgtatggg
     3361 ttgtaccagg cgccgtaacc gtacgtgcgc cagtaggggt aatagatcgg gtagtaaccg
     3421 ccgtaccagt agtaaggcgg gtagtaccag ccggtgcccc aaacagtgca accccaaccg
     3481 accatcaaac cggtgtagcc tgcgtaggcc gcatacgtca cccaatcgtc atcgtcgtcg
     3541 tcatcttcgg cgactgttac gtacgtgacg ctgtgtgaag gcgagcttgg cggtatcttg
     3601 tagatgtcct ggggaacgga ggtcgcgagg gtccacgggc cgtttggatt gttggccatg
     3661 aaccacacgc cctggtaaca catgtagtac gtgtcgccga ccttgacgat ctccttgtcg
     3721 gtgtttgccg cacgttgcag ttgtgtgcct gagatgtttt cgtactgcgg ctcgccgttg
     3781 taagcgacgt ccggagcctt gatctctttc ttgtttacac gagcgtattg cgggatctcc
     3841 gcgagcagca ccgcttctgc cgcctgctgt gtgccgggca ctgatgccag cacgcgcgaa
     3901 cgcggatgtt cgagtgagat tcgcttgaag tcttccggca ggctcggcgt ggcgaaggtc
     3961 cagtgaccgc ctaatccggg agccatgaac catctgcccg ccacgagata gtaaaccgga
     4021 ccgtctttgc cgagccggaa gagatcgctc tccgtgttgc tgatccacag caagcccgta
     4081 ttgggaacgg gctcatattt gggttgaccg tcgatgagaa tcagctcact cggatcgttg
     4141 gtgacgtaaa ccttcggcag tgttttggcg ggttgtccgg ggcgacttgc gcgcacgtct
     4201 ttccaattat cgtcctcggg cagtttattg aaactgtccg gcagtttgcc ggcacgggac
     4261 cagaagcctt gcagatcggt ggcccgcagc cacgaggtgt cgtaacgcag gtagtacatt
     4321 cctgtgggct ggtgctgaaa gatgtcccag ttggtattga ccgcaaactt caattcgttg
     4381 tctttgatcg ggctccagat aggttgtcca tcgaagctca cgaggatcga gggtgaataa
     4441 gtcagtatga ttctgggtgg atcgctcttt aggccctcga cgttcttggg attgatcgtg
     4501 ctcttgtcga cgtaggcgag cacgcgatcg agatcgatga tgcggtcttc ttcgggaatg
     4561 ttcttttcga gctcgctgac gatctcctga gtctgttctt tcgagagcgt ttgaaagttg
     4621 gtctcgatga tcttgatctt cgaaaacttc accagccgct gctcgagtgc gacttcggtg
     4681 tcagtctgaa acttgagtgt tcccaacgcg ggcttctgct cgcctttcgc cacatacgag
     4741 acggcggaga aagcgatcaa agttttctgg ttctcccaac tcgcgatctg cggctgatac
     4801 agcacgattt gcgcctcact cggcaaactg taaccgcgcg gccaaccccg atcggacgcc
     4861 gttcgcgact gcgcgcgagt ttgtcctgcc tgttgaaccg gcgcgggagc aaaccacggg
     4921 aaaacaaaaa gcaagatcga gataagagct aactgcatgg cagatcgtta cctttcctgc
     4981 gttgacgtct gccgggaatc ttatggatgg aggcagttat gggtaactgt cacttttgac
     5041 agttcggctt atctccggtc tgacagctac ccaaaagggg agaaatgccg caaagcacag
     5101 taaagattga gcttataaac ctgaaacaca acaaaaatct tgacactaac g
//
LOCUS       DASWTX010000217         2626 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_24982, whole genome shotgun sequence.
ACCESSION   DASWTX010000217 DASWTX010000000
VERSION     DASWTX010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2626
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24982"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..858)
                     /locus_tag="VGD38_03360"
     CDS             complement(<1..858)
                     /locus_tag="VGD38_03360"
                     /inference="COORDINATES: protein motif:HMM:NF019292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+ dependent nucleoside transporter N-terminal
                     domain-containing protein"
                     /protein_id="HEY0727082.1"
                     /translation="MILRATSVAGFIVFAGIAWLLSTNRRKIAWKTIAWGVALQLLIG
                     LIVFRLPVSHRVFLWLNDAVLVLLNASRSGAAFLFGPLAAGPGEQGSVGFILVFQVLP
                     VIIFFAAFTAVLYHLRVLQVLVRLFAKLFHRTMKISGAEALCGSANIFVGMESALVVR
                     PYLEKMTRSELLVVLATGMATAASSTLGVYVAFLSGVFPQIAGHLLSASIIAIPASVV
                     MAKLLVPETETPQTREGVPPEDESSRSKNLISAIIEGSMDGLKLAAGMTALLIAILGL
                     VALIDKILGA"
     gene            complement(924..1586)
                     /locus_tag="VGD38_03365"
     CDS             complement(924..1586)
                     /locus_tag="VGD38_03365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727083.1"
                     /translation="MKHLFSFALLFLFTLVASGTTFANPPVAKVISIAEARSLPLGTI
                     VTIDGSVTVPSGAFSSSTFDQGFAIQDRTGGIYVSTSDNLGFAPRQQVRVTGTLADTV
                     LPGLLVLVDVTDVKAHGSGPKVHPLPVATGDVNESTEGSLVRVTGTITQPIINDLPFG
                     FIIFVNDGSGEVHIFVCASTGIDVSGLSPGQTIEVTGFSGQFADHFEVDPRFQSDIRV
                     LP"
     gene            complement(1615..2295)
                     /locus_tag="VGD38_03370"
     CDS             complement(1615..2295)
                     /locus_tag="VGD38_03370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727084.1"
                     /translation="MKHATEVDHVVAVTTIVSRHKNVFRSAVVGGLWGMGHTASLLVV
                     AVIVLSLRIAIPEIVSAWLEFGVAIMIIGLGVSALWRALRKSGHVHVHKHDHDGLSHT
                     HVHFHEHETRHEPAAASQHSHNVSRVGWKPVLVGMVHGLAGSGALTLLVLTQIGSPWL
                     GLLYVLMFGVGSIVGMLLMSALIGLPFAIASAKLTHIHHGLQTAAAVLSICFGVWYAF
                     SAGSGTLF"
BASE COUNT          666 a          755 c          730 g          475 t
ORIGIN      
        1 cgcgccgagt atcttgtcga tcaacgcaac taacccgagg atcgcaatca gcagcgccgt
       61 catcccggcc gccagtttta atccatccat cgagccttcg atgattgcgc taatcagatt
      121 cttcgatcgg ctcgactcgt cttcgggagg aacgccctcg cgcgtctgcg gcgtttcagt
      181 ttcgggcacg agcagcttcg ccataaccac cgaagcggga atcgcgatga ttgaagcgga
      241 aagcaggtga ccggctatct gcggaaacac gcccgaaaga aacgcgacat agactccgag
      301 tgtgctcgaa gcagccgtgg ccatgccggt cgccagcacg accaacaatt cagagcgcgt
      361 catcttttcc aggtaaggcc gcacgacgag cgcggattcc attcccacaa agatgttggc
      421 ggagccgcag agcgcttcag caccgctgat cttcatcgtg cgatgaaaaa gtttggcaaa
      481 cagccgcacg agtacttgca agacgcggag gtgatagagc accgctgtga acgcggcaaa
      541 gaagataatc accggcagaa cctggaagac caggatgaag ccgacggatc cttgttcgcc
      601 tggaccagcg gcgagtggtc caaacagaaa cgcagcaccg cttcgcgacg cgttgagtaa
      661 gacaagcacc gcgtcgttga gccagagaaa aactcgatgc gaaacgggca gacggaaaac
      721 gatcaagccg atgaggagtt gcagtgcaac tccccaggca atcgttttcc acgcgatctt
      781 gcggcggttg gtagaaagca gccaggcaat ccccgcaaag actatgaaac ccgcgacgga
      841 cgtcgcgcga agaatcattt cgttcctcta tccgttattt ggtggcgcgt aagattacga
      901 gatgagaggc acgagtggca aattcagggc aagactctga tgtcgctctg aaaccgtgga
      961 tcgacctcga agtggtccgc gaactggccg ctgaaacccg tcacctcgat cgtctggccc
     1021 ggactgagac cactcacgtc gatgcccgtc gaagcacaaa caaatatgtg gacttcgccg
     1081 gagccgtcgt tgacgaagat gatgaatcca aacggcaggt cgttgatgat cggttgcgtg
     1141 atcgttcccg tgacgcgaac gagcgagcct tccgtcgatt cgttcacgtc tcccgtcgca
     1201 accggaagcg gatgcacctt tggaccactg ccgtgagctt taacgtccgt gacgtctacc
     1261 aggaccagca agcccggcag cacggtgtca gcgagtgtgc ccgtcacgcg cacctgttgg
     1321 cgcggcgcga agccgagatt gtcagacgtg ctgacgtaaa tgccgcccgt gcgatcctga
     1381 atggcaaagc cctgatcgaa ggtgctcgaa ctgaaagcgc ccgaaggcac ggtgacagaa
     1441 ccgtcgatcg tgacgatggt gcccaacggc aagctacgtg cttcagcaat cgagatcacc
     1501 ttcgcaaccg gtggattggc gaatgtcgtc ccactagcga caagcgtaaa gaggaaaagc
     1561 aacgcgaacg agaagaggtg tttcatgagt tttctccttt gagtatttga gggatcaaaa
     1621 cagagtgccg gagccggcgc tgaaggcgta ccaaacgccg aaacagatgc tgagcacggc
     1681 ggccgctgtt tgtagcccgt gatggatgtg agtcaatttc gctgaggcga tagcgaaagg
     1741 taagccaatc aacgcggaca tcaggagcat gcccacgatt gaaccaacac caaacatcaa
     1801 cacatacaac agaccaagcc acggcgaacc gatctgcgtg agtaccagca acgtcaacgc
     1861 gcccgagcct gcgaggccat ggaccatacc gaccagaaca ggtttccacc cgacgcgcga
     1921 cacgttatga gaatgttgag aagcagcagc gggctcgtgt ctcgtctcgt gctcgtgaaa
     1981 gtgaacgtga gtatgcgaga gcccatcgtg atcgtgcttg tgaacgtgaa cgtgaccgct
     2041 ctttcgcaac gcgcgccaga gagcactcac gcccaaaccg ataatcatga tcgcgacgcc
     2101 gaattccagc caggcgctca cgatttccgg aatcgcgatc cgcaacgaca acacgatcac
     2161 ggcgacgacg agcagcgacg cagtgtggcc cattccccaa agtccaccca ccactgccga
     2221 ccgaaaaacg ttcttgtgcc ggctcacgat cgtcgtgacc gccacaacgt gatcgacctc
     2281 ggtggcatgt ttcaagccga agaccaagcc gagacttaga atgacaaaaa tattcagtga
     2341 cccaggattc tctaccatgt tggtgattgt tcgcgcccca gcataccaac gatccgcctt
     2401 ccgccaaaac ccgcgcgaac cgggctcgct gcggatgtaa actcttgcac aatctttcgc
     2461 ggactctcat aatcagcgca tgacaccgaa agagatcgtg ctggaaacaa ttcgtgcctt
     2521 gccggacgat tgttcaatag acgagattgc cgagcgcatt gaatttatgg ctgccgtgca
     2581 gaaaggtctc gatcaactcg acagaggtga aggtattcct cacgaa
//
LOCUS       DASWTX010000218         2452 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_175777, whole genome shotgun sequence.
ACCESSION   DASWTX010000218 DASWTX010000000
VERSION     DASWTX010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2452)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2452
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175777"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..382
                     /locus_tag="VGD38_03375"
     CDS             <1..382
                     /locus_tag="VGD38_03375"
                     /inference="COORDINATES: protein motif:HMM:NF016274.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HEY0727085.1"
                     /translation="IVCAIEDDPNDANYELLQDNLERLKRMTDANDRAFEIVTLPMPG
                     IVGGESTGTRNLDRLPASYANFYIANNVVLLPVFGHENDARAADTLQRVFPTRRVIPI
                     HCEPLVWGMGTIHCLTQQQPQINQ"
     gene            complement(372..1772)
                     /locus_tag="VGD38_03380"
     CDS             complement(372..1772)
                     /locus_tag="VGD38_03380"
                     /inference="COORDINATES: protein motif:HMM:NF014069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEY0727086.1"
                     /translation="MNSSQLPEKVILLSRAVRDAGGRALLVGGCVRDELMGVEPKDWD
                     LEVYGVAPERLREILDQYGPVNVVGEAFTVYKLGHDFDVSMPRRERKAGRGHRAFVIE
                     GDPSMDVAEASRRRDFTINAILKDPLTAEIIDPFGGRSDIEQGVLRAVSAETFGEDSL
                     RVLRAAQFAARFEFRIAPETVELCRTIDLSDLPAERIWGELEKLLLRAQRPSIGLGWL
                     HALGVLEKVFPEIHALIDVPQDPEWHPEGDVFVHTRLTVDRARELIDELSYPRRVTVM
                     LAALAHDFGKPATTEFIEGRMRSRGHEGAGVAPAESFLERINIHTIDGYNVRGQVIAL
                     VREHLKPGEFFKKRDEVGEGAFRRLARRCEPDLLYRVAKADSLGRNAPWVPQEKWYGS
                     EAQEWFIQRARELEVEQRPPEPLLLGRHLLALGVGPGPRVGEITRAVYEMQLDGRVRT
                     VDDAIAEARKLVESTG"
     gene            complement(1805..2176)
                     /locus_tag="VGD38_03385"
     CDS             complement(1805..2176)
                     /locus_tag="VGD38_03385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727087.1"
                     /translation="MPVVKKRNQQTETRLLLESEDPVELPPAEIEDRAVLVQFEQFKP
                     YIPELLEALRAGTVAEPVPVMIDGSTFAIHGETRTFWVKLWHAAGSELTRIDRAQVIS
                     CLPSTRGVQVLIDDQEVQEDE"
     gene            complement(2180..>2452)
                     /locus_tag="VGD38_03390"
     CDS             complement(2180..>2452)
                     /locus_tag="VGD38_03390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009252629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="His/Gly/Thr/Pro-type tRNA ligase C-terminal
                     domain-containing protein"
                     /protein_id="HEY0727088.1"
                     /translation="IKRSLQPVLRAVYDDTGGIGKLYARQDEIGTPLCVTVDHQSLED
                     EAVTVRDRDTWEQERVKVNELAEYLQRRLKTASPVEPVVGAPGLEI"
BASE COUNT          528 a          897 c          574 g          453 t
ORIGIN      
        1 catcgtctgt gcgatagaag acgacccgaa cgacgcaaac tacgaactcc tgcaggacaa
       61 tctcgagcgc ctcaaacgaa tgaccgatgc caacgatcgc gcgttcgaga tcgtcacgtt
      121 gccgatgccc ggcatcgtcg ggggcgaaag caccggcaca cgcaatctcg atcgcctgcc
      181 ggcaagctac gcaaacttct acatcgccaa caacgtcgtg ctgcttcccg tcttcggtca
      241 cgaaaacgac gctcgcgccg ccgacacttt acaacgcgtc tttcccactc gacgcgtgat
      301 cccgattcat tgcgaaccac tcgtctgggg catgggcacc attcactgcc tcacgcagca
      361 acagccacag atcaaccagt agattcaacc agctttcgcg cttcagcaat cgcgtcatcg
      421 accgttcgca cgcgcccgtc caactgcatc tcgtaaaccg cgcgcgtgat ctcccccacc
      481 cttggaccag gccccacacc caacgccaaa aggtgccggc ccaacaacaa cggctccggc
      541 ggacgctgct cgacctccaa ctcccgcgcg cgctgaataa accactcctg cgcctccgac
      601 ccgtaccatt tttcctgagg tacccacggc gcattccgtc ccagcgagtc agccttcgcg
      661 actcggtaca acaagtcggg ctcgcaacgg cgtgccaaac gccgaaacgc accttcacca
      721 acctcgtcgc gcttcttaaa aaactctccc ggtttcaaat gctcacgcac gagcgcgatc
      781 acctgcccgc gcacgttgta accatcgatc gtgtgaatgt ttatccgctc gagaaacgac
      841 tccgccggcg ccacgcccgc gccttcgtgc ccacgcgaac gcatgcgccc ttcgatgaat
      901 tccgtcgtcg cgggctttcc aaaatcatgg gccaacgccg ccaacatcac cgtgacccgc
      961 cgcggatacg aaagctcgtc gatcaactcc cgcgcccggt caaccgtcag cctcgtatgc
     1021 acaaacacgt cgccttcagg atgccactcc ggatcctgcg gcacgtcgat cagcgcatga
     1081 atctccggaa agactttttc caacactccc agcgcgtgca accagcccag cccaatcgac
     1141 ggtcgttgcg ctcgcaacag cagcttctcc aactcgcccc agattcgttc ggcaggcaga
     1201 tcgctcagat ctatcgtccg gcaaagctca accgtctccg gcgcgatccg aaactcgaac
     1261 ctcgcagcaa actgcgccgc tcgcaacaca cgcaaactgt cttcaccaaa cgtctccgcg
     1321 gaaacagcac gcaacacgcc ctgttcgatg tcgcttcgcc caccaaacgg atcgattatc
     1381 tccgcggtaa gcggatcttt taggatcgcg ttgatcgtga agtcgcgccg cctcgacgcc
     1441 tccgcaacat ccatcgacgg atcgccttca atcacaaacg cgcgatgacc acgccccgct
     1501 ttacgctcgc ggcgcggcat cgagacgtcg aaatcgtgcc caagcttata aaccgtgaac
     1561 gcttcgccga cgacgttcac tggtccatac tgatcgagaa tctcgcgcag ccgctccggc
     1621 gcgacgccat aaacctcaag gtcccaatcc tttggctcga cgcccatcag ctcatcgcgc
     1681 acacatccac ccacgagcag cgcgcgcccg cccgcgtcgc gaaccgcgcg cgaaagcaga
     1741 atgaccttct ctggtaattg ggagctattc ataggtcctg taggtcccat aggccctata
     1801 ggacctattc gtcttcttgc acttcctggt cgtcgatcaa aacctgaacg ccgcgcgtgg
     1861 agggcaaaca gctaatcact tgagcgcgat cgattcgcgt gagctcgctg cccgcggcgt
     1921 gccacagctt cacccagaat gtccgtgtct cgccgtgaat cgcaaacgtc gaaccgtcga
     1981 tcatcaccgg caccggttcg gcaaccgtcc cggcacgcaa cgcctcaagc agctcaggaa
     2041 tgtaaggctt gaactgctca aactggacca acaccgcgcg gtcttcgatc tctgccggcg
     2101 gcaactccac cggatcctcc gactccagca acagccgcgt ctcagtttgt tgatttcttt
     2161 tcttaacaac cggcataact cagatttcca accccggcgc gcccaccaca ggctccaccg
     2221 gcgacgccgt tttcaaacgg cgctgtaaat actccgcgag ctcattaact ttcactcgtt
     2281 cctgttccca cgtgtcgcgg tcgcgcaccg taaccgcctc atcctcgagc gactggtggt
     2341 ccaccgtcac gcacaacggc gttccgatct cgtcctgccg cgcgtaaagc tttccaatgc
     2401 cgccggtgtc gtcgtaaaca gcgcgcaaca ctggctgcaa cgaccgcttg at
//
LOCUS       DASWTX010000219         2470 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_111727, whole genome shotgun sequence.
ACCESSION   DASWTX010000219 DASWTX010000000
VERSION     DASWTX010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2470)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2470)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2470
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111727"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..915)
                     /locus_tag="VGD38_03395"
     CDS             complement(<1..915)
                     /locus_tag="VGD38_03395"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY0727089.1"
                     /translation="MQRLEKLIFEQADRTPEAVAVEHNGARLTYRELKEQALEISREL
                     QESGLLPGLSVAIFQDRSLATLPLMLGIWEAGGVVVPINPNTPPKMLETMIHDASPRI
                     ILMDATVKSQVPHFMNNGNGRQPTVHQPDDCYVIYTSGSEGRPKGVVGTHRSLIQYLS
                     WQVKEFAVQGTDVFSQTAPLSFDFSLKELLVPLLCGASVCIADRNTVMDARKFVKWVH
                     DSKITVMCCVPTLLRSILQLPDSQVDRETFEHLRSLLISGDMLRWDDVSGWRERFGNH
                     VELFNLDGPTEVTVIKLFYRIPETRAFGS"
     gene            complement(1104..>2470)
                     /locus_tag="VGD38_03400"
     CDS             complement(1104..>2470)
                     /locus_tag="VGD38_03400"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HEY0727090.1"
                     /translation="FEQFDSGDTDLYKTPAGWRAADVRNEEIVVRNPKATKPETVTFE
                     VKVTRHGPVIFESGSLGLSLRWTALDADVIDLDTFLAINRARNWDEFTTALKSYSGPP
                     QNFTYADTAGHIGYYSAGRIPVRRSGDGSLPYDGRTDDGEWLGFIPFEDLPHAFDPPS
                     RQVVSANQRIVNDAYPYHLTHNWRVPYRARRIHDLLQTKAKFDTGDFLDIQGDTYSFP
                     DAIFAAQLVKLGQRFKDTSTEWHELVEMLDGWDGYSSSDSTVLPIIAEIRKAFRNQIL
                     ETAIGTQRAELYEWRNEGALIDKLITEKPKAWLPPDFVSYDALLLACYREAIDALTKQ
                     LGDDREQWTWGNVAQVRFPHPLERLGPAGQRFATRALPQNADGSMPTVNAGSRVSLRF
                     IADLSDWDATRLCLPLGESGDPRSPNRDDQLDEWYNVTPSILPFSEAAIANATRNVQI
                     LGPG"
BASE COUNT          503 a          684 c          707 g          576 t
ORIGIN      
        1 cgatccgaac gccctggttt ccgggatgcg atagaacaac ttgatgacgg tcacctcggt
       61 tggaccatcg agattgaaaa gctcgacgtg gttaccgaaa cgttcgcgcc agccgctcac
      121 gtcgtcccaa cgcagcatgt cgcccgagat cagcaacgag cgcaggtgtt caaacgtctc
      181 gcgatcaacc tgcgagtcgg gcaactgcaa gatcgagcgc aacaacgtcg gcacacagca
      241 catcacggtg atcttgctgt cgtggaccca tttcacgaac tttcgcgcgt ccatcaccgt
      301 gtttcgatcg gcgatgcaaa cgctcgcgcc gcagagcaat ggaaccagca actctttgag
      361 tgaaaagtcg aaggacagcg gtgcggtttg actgaagacg tccgttccct gcaccgcaaa
      421 ttcttttact tgccagctca ggtattggat caagctccgg tgcgtgccga cgacaccttt
      481 cggccgaccc tctgaacccg acgtgtagat gacgtaacaa tcgtctggtt gatgcacggt
      541 cggctgtctg ccgttaccgt tgttcatgaa gtgagggacc tgcgacttca ccgtggcatc
      601 catcaggatg atccgcggcg acgcgtcgtg aatcatggtt tcgagcatct tcggcggcgt
      661 gtttggattg atgggcacga ccaccccacc cgcttcccag atgcccaaca tcaacggcaa
      721 cgtcgccagt gaacggtcct ggaagatcgc gactgacaac cccggaagca atcctgactc
      781 ttgcagttca cggctgattt caagagcctg ctctttcagt tcacggtaag tcaggcgcgc
      841 gccgttgtgc tcgaccgcaa cggcttccgg cgttcggtca gcttgctcaa agattagttt
      901 ttcaagtcgc tgcatagctg tgggcactgc cgggtattcc gaccctcaag attgctgttg
      961 ttcttttctc gggaatgtga ggtgggtgac aagctaccgc cattaggatt actcgatcct
     1021 agctcgggca gcaaaaggtt gccgagtttc ccacgacaac aatttcctgt caacaattaa
     1081 aatccggtgt tctacctatg gatttacccg ggtccgagaa tctgtacgtt gcgtgttgca
     1141 ttcgcgatcg cggcctcgct gaagggcaaa atcgacggtg ttacgttgta ccattcgtcg
     1201 agttgatcgt cgcgatttgg actccgtgga tcgcctgatt cgccgagtgg caagcagagt
     1261 cgcgtcgcgt cccaatcgct taaatcggcg atgaagcgga gtgaaactcg tgagcctgcg
     1321 ttgactgtcg gcatcgagcc gtctgcgttc tgcggcaacg ctcgcgtggc gaatcgctgg
     1381 cctgccggtc cgagtcgttc gagtggatgc gggaaacgca cttgcgcgac gtttccccag
     1441 gtccattgtt cacgatcgtc gccgagctgt tttgtgagtg cgtcgatcgc ttcgcgataa
     1501 caggccagca ggagtgcgtc gtacgaaaca aaatcaggcg gcaaccaggc cttcggtttt
     1561 tccgtgatca acttgtcgat caacgcacct tcgtttcgcc actcgtatag ttctgctcgt
     1621 tgggttccga tggcggtctc gagtatttga ttgcgaaacg ctttgcggat ctccgctatg
     1681 atcggcagaa ccgttgaatc cgaactcgaa tatccatccc agccgtcgag catttcgacg
     1741 agctcatgcc attcggtgga agtgtcttta aatcgttgac cgagtttcac gagttgcgcg
     1801 gcaaagatcg cgtccggaaa ggaatacgta tcgccctgga tgtcgaggaa gtcgccggtg
     1861 tcgaactttg ctttagtttg cagtagatcg tgaatgcgcc gcgcgcgata gggcacgcgc
     1921 cagttgtgcg tcaggtgata tggataagca tcgttaacga ttcgctggtt cgcgctgacg
     1981 acttgtctcg acggcggatc gaatgcgtgc ggcaagtctt caaacggaat gaacccgagc
     2041 cactcgccgt catcggtccg gccgtcgtaa ggcaagctgc catctccgga tctgcggacc
     2101 ggaatgcgtc cggcgctgta ataaccgatg tggccggcag tgtcggcgta agtgaaattc
     2161 tgtggtggtc cactgtaact cttcaacgcg gtcgtgaatt cgtcccagtt gcgcgcgcga
     2221 ttgatcgcga ggaacgtatc gagatcgatg acgtcggcgt cgagcgcggt ccagcgcaac
     2281 gaaaggccga gcgatccgct ttcgaaaatg accgggccgt gacgcgtgac tttgacctca
     2341 aaagtgaccg tttcaggttt tgtcgctttg ggatttcgga ccacgatctc ttcgttacgc
     2401 acgtccgcgg cacgccaacc ggcgggggtc ttgtagagat ccgtgtcacc gctatcaaat
     2461 tgctcgaagt
//
LOCUS       DASWTX010000220         3494 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_132309, whole genome shotgun sequence.
ACCESSION   DASWTX010000220 DASWTX010000000
VERSION     DASWTX010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3494)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3494)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3494
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132309"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..681
                     /locus_tag="VGD38_03405"
     CDS             <1..681
                     /locus_tag="VGD38_03405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727091.1"
                     /translation="HAVIHIFVWTVTRDVVTPGGVDEKIGYPMATVDVKLSETAVTPE
                     SSSRTDQITMGSIQYNSSTYSILLIDVEKEQARQEVERKEEELKRRMRELAKDDEPPA
                     SKTDQPKVAGPPALMPQQEQVPAPLLPGAPGPSPFVEQETRATASRIAGNQLLEEGRR
                     LRDSGAGMDQRQKFKRKVQVWRGLVQKMIRDFGNYKAVESLTETLARFDERMNTLGSE
                     LGIDGWKD"
     gene            714..2681
                     /locus_tag="VGD38_03410"
     CDS             714..2681
                     /locus_tag="VGD38_03410"
                     /inference="COORDINATES: protein motif:HMM:NF025078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4157 domain-containing protein"
                     /protein_id="HEY0727092.1"
                     /translation="MADHTATQTGESSALVPPANSPVLQRKCDCGTHTIAEAKCETCK
                     AQAATGVIQRAATSSAPADVPPIVEDVLRSPGQPLDTSTRNSFEPRFGQDFSRVRVHA
                     DQRAADSAAAISAHAYTVGENVVVANRNYPADTYENRRLMAHELAHVVQQKSASVSTG
                     DTTAISIGRSDDASEVAADRVADSVMNDNRAGTSAAAHSQSNAIQRTVDDPKRFQETH
                     TSLFVSAPGGGGSLLTWEDPDPAKKIKGTADKLFKQAKANIQQHYIDHPEDAQGTVPT
                     RTTESALDKDAVDISQQLRARFPFMTVKVPDAEVEAKVNVMTPTLTGDQDYLREWMAN
                     RLPGWSDIKKYNISETDPRVTALLDSLLSDADVGADLKVHASRQSGFQRGQGTQREIF
                     VHRGVEAKMRKKVLFHELTHFYAHPIYREWVGTTTNERWYNEGFTEYLARLAMPAEIL
                     AIAKSYQERVDSITNEVAAHVPDDDIARAFFAGEVWRIETRSKISRREAGSQLGLKET
                     ATEKEEQAASRVGPGINQVVVEGERYRFMNLGFDQMKPKPEHVSFFKEVKTKHLDTTQ
                     SNGVVFEGHASTAGTLPYNLNLSLGRARAFYKMARDEGVASTRLIDAANPPHFGETNV
                     PAEEEDPATRAFNRRVEMKIQPVASKATKKD"
     gene            2690..>3494
                     /locus_tag="VGD38_03415"
     CDS             2690..>3494
                     /locus_tag="VGD38_03415"
                     /inference="COORDINATES: protein motif:HMM:NF025078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4157 domain-containing protein"
                     /protein_id="HEY0727093.1"
                     /translation="MAEQANAQLAKAAVVSPPVENLCLQRRCECGNHTVGGAECEECA
                     AKKSPFHSSNRNQWESPANPAWTSPQSDGQPIEPPLRHFMEARFKHDFSGVRVHTDAQ
                     ANAAAKSMGALAYTYGEDIFFDNSSFRPNTPHGLTLIAHELSHVVQQSRHPLPLNEEL
                     RVEPETSSAEVEADRMALAVVTPGPVVEQPSARSRGLNRGAGWAVLGGVIGAVVGLLG
                     LLAGPIGLIAVAAGAALGAWAGYSLSNDQAQIKRGTPMQRIRRMLTRTGD"
BASE COUNT          832 a         1029 c         1007 g          626 t
ORIGIN      
        1 cacgctgtca ttcacatttt tgtttggacc gtcacccgag atgtggttac gccgggaggc
       61 gtcgacgaaa aaatcggtta tcccatggcg acggtcgacg tgaagctatc cgaaaccgcc
      121 gtgacgccgg aaagctcgag ccgcaccgac cagatcacga tgggttcgat ccagtacaac
      181 agctcaacct actcgatcct ccttatcgac gtcgaaaagg aacaagctcg ccaggaagtt
      241 gaacggaaag aagaagagtt gaagagacgc atgcgcgagt tggcgaagga cgacgaaccg
      301 ccggcgtcaa agacggatca accaaaagtc gccggcccgc ccgcgctgat gccgcagcag
      361 gaacaagtac ccgcgccgtt gttgcccggt gctcctggtc caagtccgtt tgtcgaacag
      421 gaaacacgcg caaccgcttc acggatcgca ggcaatcaat tgctggaaga agggcgccgc
      481 ttgcgtgact ccggcgccgg gatggaccaa cgacagaaat tcaagcgcaa ggtgcaggtt
      541 tggcgcggtc tcgttcagaa gatgatccgc gacttcggta attacaaggc agtcgaatct
      601 ttaacagaaa cactcgcgcg tttcgacgaa cgcatgaaca cactcggatc ggagttgggt
      661 atcgatgggt ggaaggacta gcgcagcacg aatgctgagc gccaactgaa atcatggccg
      721 atcataccgc cacacaaacc ggagaatcct cggcgctcgt tccgccggca aactctcctg
      781 tccttcagcg caagtgcgac tgcgggacac acacgatcgc ggaagcaaag tgtgagacgt
      841 gcaaagcaca agccgccacg ggtgtcattc aacgtgccgc gacgagttcc gctccggctg
      901 atgtaccgcc gatcgtcgag gatgttctac gttcaccggg ccagccactc gacacctcga
      961 cacgcaactc cttcgaaccc cgcttcggcc aggacttctc gcgcgtccgt gttcatgccg
     1021 atcaacgtgc cgctgactcc gcggcagcca tcagcgcaca tgcttatacc gtcggagaaa
     1081 acgtagtggt cgccaacagg aactatccgg ctgacacgta cgagaaccgc cggttgatgg
     1141 cgcacgagtt ggcccacgtg gtgcagcaga agtccgcttc tgtcagcact ggcgatacga
     1201 cagcgatctc gatcggacgt tctgacgacg cgtcagaagt ggcagccgat cgcgttgccg
     1261 attcggtcat gaacgacaac cgcgccggga cttcggccgc ggcgcattca caaagcaacg
     1321 ccattcaacg cacggtcgat gatccaaagc gctttcagga gactcacaca tcactcttcg
     1381 tctcggcgcc cggtggcggc ggcagcttgc ttacctggga agatccggat cccgcgaaga
     1441 aaatcaaagg cacggctgac aagcttttca aacaggcgaa agcaaatatc caacagcact
     1501 acatcgatca tcccgaagac gcgcagggca cagttccgac tcgaactact gagtccgctc
     1561 tcgacaaaga tgcggttgac atcagccaac aactgcgcgc gcgttttcct ttcatgactg
     1621 tcaaggtgcc tgatgcggaa gtcgaggcga aggtgaatgt gatgacgccg acgttgaccg
     1681 gtgaccagga ttacctgagg gaatggatgg ccaacaggtt accgggttgg tcggatatca
     1741 aaaagtacaa catcagtgaa accgatccac gcgtgactgc gctgctcgac agtctccttt
     1801 cagatgctga cgtcggcgca gaccttaaag tgcatgcctc ccggcagagt ggttttcagc
     1861 gtggtcaggg aacgcagaga gaaatcttcg ttcatcgcgg ggttgaagcg aagatgcgca
     1921 agaaggtcct gtttcacgag ctcacccact tctatgcgca tccgatctat cgggaatggg
     1981 ttggcaccac gacgaacgaa cgctggtaca acgaagggtt taccgagtat ctggcccggc
     2041 ttgccatgcc tgccgagata ctcgcaatcg caaagtcgta tcaggaacgg gttgatagta
     2101 ttaccaacga agtcgccgct cacgtgcctg acgacgacat cgcacgcgcc ttcttcgcgg
     2161 gtgaggtgtg gcgcattgaa accagatcga agatctcccg gcgtgaggcg ggaagccagt
     2221 taggactcaa ggaaaccgct acggaaaagg aagaacaggc agcttctcgc gttggcccgg
     2281 gaatcaacca ggttgtcgta gaaggtgaac gataccgctt catgaatctc ggcttcgatc
     2341 agatgaagcc gaaacccgag cacgtcagtt tcttcaaaga agtcaaaaca aaacatctcg
     2401 atactacgca aagcaacggc gtcgtctttg aaggccatgc ttcaacggcc ggcacgttgc
     2461 catacaacct caatttatcg ctcggtcggg caagggcctt ttacaagatg gcgcgcgatg
     2521 agggtgttgc cagcacgcgg ctgatcgacg ctgcaaatcc gccgcacttc ggcgaaacga
     2581 atgtccccgc ggaggaagaa gatccggcga cgcgcgcgtt caaccgccgg gtcgaaatga
     2641 agattcaacc agtggcgagt aaggcaacga agaaagactg aaactggaga tggccgaaca
     2701 agccaacgca caactggcaa aagccgccgt ggtttcacca ccggtggaaa atctttgctt
     2761 gcagcgtcgc tgcgagtgcg gcaaccacac tgtcggcggc gcagagtgtg aagaatgcgc
     2821 cgcgaaaaag tctccgtttc attcgtctaa ccggaatcag tgggagtcgc ccgcgaatcc
     2881 cgcgtggacc agtccgcaaa gcgacggtca accaatcgag cctccactcc gtcacttcat
     2941 ggaggcccgt ttcaaacacg acttctcggg tgtgcgcgta cacaccgacg cgcaggcaaa
     3001 tgccgccgcg aaatcgatgg gcgccctcgc ctacacgtac ggcgaagaca tcttcttcga
     3061 taactcgagc ttccggccca acacgccgca cggactcacg ctgatcgctc acgagctcag
     3121 tcacgtggtc caacaatcgc ggcatccgtt gccgttgaat gaagagctgc gcgtcgaacc
     3181 ggagacgtcg agtgctgaag tcgaagcaga tcgcatggcg ctcgccgtcg tgacgcctgg
     3241 tccagtcgtc gaacagccat cggcgcgttc acgaggtttg aaccgcggcg caggttgggc
     3301 ggtgctcggt ggcgtgatcg gcgctgtcgt cggcttgctt ggtctactcg ccggacccat
     3361 cggcctgatc gcggtcgccg ccggcgctgc gctcggcgcg tgggccggtt actccctctc
     3421 gaacgatcag gcacaaatca agcgcggcac tccgatgcaa cgcatacgcc gcatgctcac
     3481 gcgaaccggc gacg
//
LOCUS       DASWTX010000221         2074 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_219188, whole genome shotgun sequence.
ACCESSION   DASWTX010000221 DASWTX010000000
VERSION     DASWTX010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2074
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219188"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1611)
                     /locus_tag="VGD38_03420"
     CDS             complement(<1..1611)
                     /locus_tag="VGD38_03420"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY0727094.1"
                     /translation="MSFSITAYGQSQANTGNIEGRVTDPNAAAVPNVTVTATNLATGL
                     TKNAQTNEEGVYRIVFLAPGSYKVDTIGASGFAPASFTNVIVTVGGQTPLDIQLALGS
                     ATTAMVDVSAEGQVVETARTSISSVVNERAIQNLPVNGRNFLDFATLTPSVVRDPTRQ
                     GDLAVGGQKGTLNSLQVDGADNNNTFFGQSFGRTGTRPPYQFSEESVQEFQVNQNGFS
                     AEFGRAGGAVINVVTKSGTNEWHGSAFEFFRDEALNSNTPILTARNAKRPKSQINQFG
                     ATIGGPIKKDRAFFFFAYDGQRSNIPNVVDAPNFFAQPISIQNLLAPKMNTYQIGRDQ
                     DVYMAKTDIRLNNSNQLVLRFNQQNFTGNNNENGGPLSVEEHSGNSIAKTTTFSGSLI
                     STLSPTVINDFRFQFGRDREPGEANSEAAEARIQTGGGFLQLGRNNFSPRETTIKRAQ
                     FIDVVSLTHGEHSLKFGADLNFDRVFNFFPGLFSGQFTFNSYALFASNTPAAFVQNFP
                     GAGTTGGTTNPDLNEYGLFVQDDWRVTPK"
     gene            complement(1677..>2074)
                     /locus_tag="VGD38_03425"
     CDS             complement(1677..>2074)
                     /locus_tag="VGD38_03425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727095.1"
                     /translation="DEKRTPRLLHLPLVMGLGIGLAFSNARAVLEALLGVKSEFVRTP
                     KYRVEEATDATWKRKKYKRKRGLLPLLELAFALYFLLAIGYTIRLHMWGTLPFLLLFF
                     FGFGYMGVMSILQTASGKRLTALWRPVKT"
BASE COUNT          414 a          555 c          641 g          464 t
ORIGIN      
        1 cttcggcgtg acgcgccagt cgtcctgcac gaacagtcca tactcgttca gatcgggatt
       61 cgtcgtaccg ccggttgtgc ccgcgcccgg gaagttctga acgaaagccg ccggtgtgtt
      121 tgaagcgaag agcgcgtagg aattgaacgt gaactgaccg ctgaagagtc cagggaagaa
      181 gttgaacacg cgatcgaaat tcagatccgc cccgaacttc agactgtgtt cgccgtgcgt
      241 gagactcacg acgtcgatga actgcgcgcg cttgatggtc gtttcgcgcg ggctgaaatt
      301 attccggccc aactgcaaaa agccgccgcc ggtttgaatg cgtgcttcag cggcttcgct
      361 gtttgcttcg cccggttcgc ggtcgcggcc aaactggaaa cgaaaatcat tgatcaccgt
      421 cggcgagaga gtcgaaatca acgagccgga aaacgtcgtc gtcttcgcga tgctgtttcc
      481 ggaatgttct tcgacgctca gtggtccacc gttctcgttg ttgttgccgg tgaagttctg
      541 ttgattgaaa cgcagcacga gctggtttga gttgttgagg cgaatgtcgg tcttcgccat
      601 gtacacgtcc tgatcgcgcc cgatctggta ggtgttcatc ttcggcgcga gcaggttttg
      661 aatgctgatc ggctgcgcga aaaagttcgg cgcgtcgacg acgttcggaa tgttcgaacg
      721 ctggccgtcg taagcgaaga agaaaaacgc gcgatccttc ttgattggac caccaatggt
      781 cgcgccgaac tggttgatct gcgacttcgg acgtttggcg ttgcgcgccg tgagaatcgg
      841 cgtgtttgaa ttgagcgctt catcgcggaa gaattcaaac gcgctgccgt gccactcgtt
      901 tgtgcccgac ttcgtgacga cgttgatgac tgcgccgccg gcccggccaa actccgccga
      961 gaaaccgttc tggtttacct gaaactcctg cactgactct tccgaaaact ggtaaggcgg
     1021 gcgcgtgccg gtgcggccaa acgattggcc gaagaacgtg ttgttattgt cggcgccgtc
     1081 gacttgcaga ctgttcagcg ttcccttttg tccgccgacg gcgaggtcgc cctggcgcgt
     1141 cggatcgcgc acgacactcg gcgtcaacgt agcgaagtcg agaaagttac ggccgttgac
     1201 cggcaggttt tgaatcgcgc gttcgttgac gactgacgag atcgacgtgc gcgcggtttc
     1261 aacgacctga ccttcggccg agacgtcgac catcgcagtg gtcgcgctgc cgagagctaa
     1321 ttgaatgtcg agtggtgttt gtccgccgac ggtgacgatg acgtttgtaa aactcgccgg
     1381 cgcgaagccc gacgcgccga tcgtgtcgac tttgtacgag ccaggcgcga gaaacacgat
     1441 gcgatagacg ccttcttcgt ttgtctgcgc attcttggtt aagccggtgg cgagattggt
     1501 tgccgtgacg gtgacgttgg gaactgcggc tgcgttcgga tcggtgacgc ggccttcgat
     1561 gttgccggtg ttagcctgcg attggccgta ggcagtgata gaaaaagaca atacgagcag
     1621 aagtaggggg actctactaa gcatggtgga cctttcttgt tgttgcgagg gtagttttac
     1681 gttttcactg gccgccagag ggctgtcaac cgtttgccgc tggcggtttg cagtatgctc
     1741 atcacaccca tgtagccgaa gccgaagaag aacaacagca ggaacggaag cgtgccccac
     1801 atgtgcaagc gaatcgtgta gccgatagcg agcaggaaat agagagcgaa ggccagctcg
     1861 agcaacggca atagaccacg cttgcgtttg tacttctttc gtttccaggt cgcgtcagtc
     1921 gcttcttcca cacgatactt cggcgttcgc acaaactccg acttcacacc gagaagcgct
     1981 tcgagcacgg cgcgcgcgtt ggagaatgcg agaccgatgc cgagtcccat cacgagcggc
     2041 aggtgcagca ggcgtggcgt gcgtttttcg tcga
//
LOCUS       DASWTX010000222         3839 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_175871, whole genome shotgun sequence.
ACCESSION   DASWTX010000222 DASWTX010000000
VERSION     DASWTX010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3839)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3839)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3839
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175871"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            181..1200
                     /locus_tag="VGD38_03430"
     CDS             181..1200
                     /locus_tag="VGD38_03430"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0727096.1"
                     /translation="MQYQNFLFTLGHRLAFLLLLMAFCVVTASAQEVDDIVRTETSLV
                     QLNVGVVDKQGRPVTSLTKSDFVIYEDGVKQSIQLFEPAQAPFSLVLMLDMSGSTVNF
                     RQQLKLASQRFLDVLSPEDRVAVIQFNAKVKSLSGFSIDRQKTAYAIEIAEGAGETHF
                     YEALKYALKELEKEGKRRKAIVVLTDGLDTHLRNADRATLSKVQTDEEALATIKPDAS
                     NDLNTVLAAADRLGVTIYPLALPSGDPKRLPLPSPHITGIYAAARARMQSLADRTGGR
                     LNEINRLEYMAQLYREVAANLRTLYTVAYQAPGDRPRGKWHEIRVEVAHPELTARTKP
                     GYFAR"
     gene            1262..1338
                     /locus_tag="VGD38_03435"
     tRNA            1262..1338
                     /locus_tag="VGD38_03435"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1296..1298,aa:Arg,seq:acg)
     gene            1434..2525
                     /locus_tag="VGD38_03440"
     CDS             1434..2525
                     /locus_tag="VGD38_03440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727097.1"
                     /translation="MRRQMLVLSLLILAALFGGYSVKPKAVAAATQIQVYGAWHCGND
                     FCTWASVRNMTDFDNRNRWIINRGDGTPSVNLIVLSFVHPMRLLNKTNDAGTTQGIPT
                     GMNQAVVDYFKSRGIRVQLSMGGITYTDAWNQALATNPVQLGLNAAEAAQRLGVGFEI
                     DYEENTNPNLPGLQAFIDAYRSVHPYDASGNNHPARLTIDLAAGDRWLIALTRKATAD
                     WLNTTTPVLDYANAMVPARQPNSAATATADWQEHVDGKPQFAPPILPLAPAKFTGALY
                     IVTGSKPAPECTSFSTSLINSTGTYVQNVAPNGAGTTSGMLGYMFWAAECPSTRRVCT
                     VPPNSCEGGVGVGATTYGIPIPMPPLRQS"
     gene            3163..>3839
                     /locus_tag="VGD38_03445"
     CDS             3163..>3839
                     /locus_tag="VGD38_03445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727098.1"
                     /translation="MKRMTTRLSALLLMAVLCIINLARAQDVTPTSALAGRHFETGEP
                     LPWLTLTAAGGFAGSSVNKAQPGPWTIQLVGRLAKSPELNRRQLQILLDAISLSSSEV
                     FATSANTPAIRVEANNAVQGLRQRALAAFPRNQVTSLFDFVAAEQSEQEIISKYYDLS
                     ALPLKGRKAAFKIASAGDKSGLWRTHLAFSLLNHPEFDEWQKEIILAGMLLATPAYFD
                     VPSSSPD"
BASE COUNT          871 a         1107 c         1011 g          850 t
ORIGIN      
        1 ggtaactcgt gaggcctgtg agtattgcca tgtttgtgag gtcctttcgt ttgtaaacgc
       61 ccgccattat aagccttccg ctgctcttgc caagcaaccg ttaacccggc aaaaacgtcc
      121 gaattccgcg cgtttgaaaa attagtcgcg ggcgggcata cttttccgac cgatttacgc
      181 atgcaatacc agaattttct tttcaccctc ggccaccggc ttgcgttttt actgcttctc
      241 atggcgtttt gcgtcgtgac tgcgtccgcg caggaagtcg acgacatcgt gcgcaccgag
      301 acctcgctcg tgcagctcaa tgtgggcgtg gtcgacaagc agggccgccc agtcacttca
      361 ttaaccaaaa gcgattttgt tatttacgaa gacggtgtga agcagtcgat tcaactcttc
      421 gaaccggctc aggcgccttt cagtctggtg ctgatgctcg acatgtcggg ctcgaccgta
      481 aacttccggc agcagttgaa actcgcgagc cagcgttttc tcgacgtcct ttcgcctgaa
      541 gatcgcgtcg ccgtgattca gttcaatgcc aaggtcaaat cgctgagtgg tttttcaatc
      601 gatcgacaaa aaactgcata cgcgatcgag attgctgaag gcgcgggtga aacacatttt
      661 tacgaagcgc tgaaatatgc gctgaaagag ttggagaaag agggcaagcg gcgcaaagcc
      721 atcgtcgtgc tcaccgatgg tctcgacacg cacctgcgca acgcggatcg cgcgacgctg
      781 tcgaaagtgc aaacagacga agaagcactc gcgacgatca agcccgatgc gagcaacgac
      841 ctgaataccg tgctggctgc tgcggatcga ctgggcgtga cgatctatcc gctggcgtta
      901 ccttccggcg atccgaagcg tctgccgttg ccttcgccac acatcaccgg catctacgcg
      961 gccgcgcgcg cgcgcatgca atcactagcc gatcgcaccg gcgggcgttt gaacgagata
     1021 aaccgtctgg aatacatggc gcaactctat cgcgaagtgg ccgcgaatct gcgcacgctt
     1081 tacacggttg cttaccaggc gccgggcgac cgcccgcgcg gtaagtggca cgaaatacgg
     1141 gtggaagtag cgcatccgga gctaaccgcg cgcaccaaac ccggctattt cgcgcgttaa
     1201 tccaagagct cagagtcgcc gttttactat ttcgccctca ccctttatta ttaccaactt
     1261 cgcacccgta gctcagctgg atagagtacc tgactacgaa tcagggggtc gcacgttcga
     1321 gtcgtgccgg gtgcaccagc cttttcttag aacctcctaa ttaagcccag caagttttag
     1381 gcattcatct gtccccttaa cgatccacgt agcctgagtg aaggagaact ggaatgcgaa
     1441 gacaaatgct tgtcctgagt ttactgatac ttgctgcact cttcggcggt tattctgtga
     1501 agccgaaagc agttgccgcg gccacccaaa tacaggttta cggcgcctgg cattgtggta
     1561 acgatttttg cacctgggcc agcgttcgta acatgaccga tttcgacaac cgcaaccgct
     1621 ggatcatcaa ccgcggcgac ggcacacctt ctgtcaatct catcgtcctg agttttgttc
     1681 acccgatgcg gctgctgaac aagaccaacg acgccggcac gacgcaaggc attcctaccg
     1741 ggatgaacca ggcagtggtt gattacttca agagccgagg cattcgcgtt caattgtcta
     1801 tgggcggaat cacgtacacc gatgcgtgga accaggccct cgcaacgaat cccgtgcaac
     1861 ttggcttgaa cgccgccgag gccgcgcaac ggctcggcgt cggctttgaa atcgattacg
     1921 aagaaaacac caatccgaat ctccccggct tgcaggcatt cattgatgca tatcgttcag
     1981 ttcatcctta cgacgcctct ggaaacaatc accccgcgcg gctaacgatc gatctcgccg
     2041 cgggtgaccg ttggctgatc gcgttgacgc gcaaagcaac agccgattgg ctcaacacga
     2101 ccacgcccgt gttggactac gcgaatgcga tggtcccagc gcggcaacct aactccgctg
     2161 caacagcaac agcagattgg caagagcacg tcgacggcaa accgcagttt gctccgccga
     2221 tcctgccgct cgcacccgcg aagtttacag gcgcgctcta catcgtcacc ggctctaagc
     2281 ccgcgcctga gtgcacgagc ttcagcacat cgctaataaa ttcaaccggc acttacgtac
     2341 aaaacgttgc gccaaacggc gccggcacga cgagcggaat gttgggttac atgttctggg
     2401 ccgcggaatg tccctcaacc cgccgcgtct gcaccgtacc accgaattcc tgtgaaggcg
     2461 gtgtcggcgt cggcgcaacc acatacggca tcccgatccc gatgccgcca ttgcgccaga
     2521 gttagcagct catcgagggc ctcccaacgg aggcccctcg aacctcaaaa caccacttgc
     2581 gctgcgatgg accatgccgg tatactccca gttgcgcata ggaaagatag caagattggc
     2641 atataaatgc gggttttacg gggttgacag tcggaggtcc atagtgctac ggttaccagt
     2701 ctccataggg tggcaaggtg tatagttgta tttgacagat tagccttctt cgctcaacag
     2761 gaggaattcc aatgcgattt atcctcatga ctcgcgcaat tgatcgacag tcaactggtt
     2821 tagctccgcc cgggtccatg tggcgtttcg ctacgtaggt cgctcaggct cgacggactt
     2881 gtataggacg cctcaaggcc ggaaatagtg cgttgtacgc gccattcaac gctgaggcag
     2941 tgatgacaga acctcattac cccttgtttg attctgtaaa gtccccggaa cctaaattgc
     3001 cctatagccc cgtatgtttg gcggctggcg cctccgacga aagattggtt gccaccacaa
     3061 actcacacga agctcctaag cgcgccaagt cagacgacgt gctgactcta tggagagtcg
     3121 ggctcggaag taaacccacc tcaaattgga ggttcctcaa ctttgaagag aatgacgacg
     3181 cgtctttcgg cgctattgtt aatggcagtc ttatgcatca taaatttggc tagagcgcag
     3241 gatgttaccc ctacgtctgc actggcggga cgccactttg aaacaggcga acctctgccg
     3301 tggctcacgc tgacggctgc tggaggtttc gccggaagct ctgttaataa ggcccagcct
     3361 ggtccatgga ccatccagct ggttggccgg ctagcgaagt cccccgaatt aaatcgaagg
     3421 caactgcaaa tacttctgga tgcgatctcg ctctcgagtt cagaggtctt cgccacctcc
     3481 gctaacactc ccgcaataag agtcgaagcc aataatgctg ttcaaggtct tcggcagcgg
     3541 gcgctcgccg cgttcccgag gaatcaggtt actagtctct ttgacttcgt ggctgccgaa
     3601 caatcggaac aagagataat cagcaaatat tatgatctct ctgctcttcc attaaagggg
     3661 agaaaggccg cgttcaagat agcgtcagca ggtgataaga gtggtctgtg gcgaactcac
     3721 cttgcttttt ctctcctaaa tcatccggaa tttgatgagt ggcagaagga gattatcctc
     3781 gccggtatgt tgcttgcgac ccccgcatac tttgacgtac cgtcgagtag cccggactg
//
LOCUS       DASWTX010000223         2821 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_154203, whole genome shotgun sequence.
ACCESSION   DASWTX010000223 DASWTX010000000
VERSION     DASWTX010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2821)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2821
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154203"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..588)
                     /locus_tag="VGD38_03450"
     CDS             complement(<1..588)
                     /locus_tag="VGD38_03450"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0727099.1"
                     /translation="MLTLDNVSVNYGAIEALTGISLRVEQGEVVTLIGANGAGKTTTL
                     RTITGLLEPRSGKITFEGEDIGGKPTHKLVARGISMSPEGRGVFANLTVWENLQMGAY
                     LSKNKSQITADMDRAFKMFPRLKDRESQKAGTLSGGEQQMLAMGRALMSNPRLLLLDE
                     PSLGLAPLVVHTIFQAIDEIKSKGTTILLVEQNAHA"
     gene            complement(593..1375)
                     /locus_tag="VGD38_03455"
     CDS             complement(593..1375)
                     /locus_tag="VGD38_03455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0727100.1"
                     /translation="MSTNNGGRDVILKTDKATIRFGGLYAVNELDMSVRQGEIFGLIG
                     PNGAGKTTIFNLLTGVYQPTSGQIYFDGQRIDGLRPYQIAGRGVSRTFQNIRLFPSMS
                     VLENVMTACHIHMGQKLFDAVLRTPRFANDEKKHREYCFELLEIFDLARVADEGGTSL
                     PYGSQRRLEIVRALATRPKLLLLDEPAAGMNPAEQEDLLHLIREIRDRFDLTILLVEH
                     NMKVVMGVCERIQVVDYGKSIALGLPQDIKNDPKVIEAYLGD"
     gene            complement(1372..2451)
                     /locus_tag="VGD38_03460"
     CDS             complement(1372..2451)
                     /locus_tag="VGD38_03460"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEY0727101.1"
                     /translation="MPRYLRNLIIALIVIAALIGLDFVFQGRMLNPYFVRILMLSGIA
                     ITLAVSLNLINGFTGQFSIGHAGFMAVGAYSSAYFSVNYGMNLANSLGGGKLGWVVAL
                     GASTLIGAAVAGLAGLAVGIPSLRLRGDYLAIVTLGFGQIIVVFLNNIEAVGGARGYS
                     GIPIVKSFFWIFLVAVLTIVIVYNIVNSAFGRALISIREDELAAEAMGVNTTRYKVLA
                     FVISSAMAGAGGVLLAHFDGYLNPKSFEFIKSFEILIMIILGGLGSIVGSVLGAIVLT
                     VLPEALRGFAEYRMVIYSLLLIILMITRPQGLLGSTAPLKAWRKRAKRGTEPAAGGGP
                     AAAPTNPSTVATQPERPAPGGENLR"
     gene            complement(2464..>2821)
                     /locus_tag="VGD38_03465"
     CDS             complement(2464..>2821)
                     /locus_tag="VGD38_03465"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEY0727102.1"
                     /translation="LSVAKLMGINTNFVIAFTFALGSALAAVGGVMVALAIPRIDPLM
                     GLMTGLKAFVAAVLGGIGNIPGAMLGGLLIGITETMVVGYLSPTYKDAVAFAILILIL
                     LFRPSGLLGTVAQEKV"
BASE COUNT          584 a          836 c          838 g          563 t
ORIGIN      
        1 cgcgtgtgcg ttttgctcga ccaggagaat cgtcgtccct tttgacttga tttcatcgat
       61 agcttgaaaa attgtgtgga ccacgagcgg cgccagtccg agcgacggct cgtccagcaa
      121 cagcaaacgc ggattcgaca tcaacgcgcg ccccatcgcg agcatctgtt gctcgccgcc
      181 ggagagcgtt ccggctttct gcgactcacg gtccttcaga cgcggaaaca tcttgaacgc
      241 gcggtccatg tcggctgtga tctgcgattt gtttttactg aggtaagcgc ccatttgcag
      301 gttttcccaa accgtgaggt ttgcaaacac gccgcggcct tcgggcgaca tcgagattcc
      361 gcgtgcgacg agtttgtgtg tcggcttgcc gccgatgtcc tcgccttcga aagtgatctt
      421 gcccgagcgg ggttcgagta atccggtgat cgtgcgcagc gtggtcgttt tgccggcgcc
      481 gttcgcgccg atgagcgtaa cgacttcgcc ctgctcgacg cgcagcgaga tgccggtcag
      541 cgcttcgatc gcgccgtaat ttaccgagac gttgtcgagt gttaacaact gatcagtctc
      601 cgagatacgc ttcgatcact ttcggatcgt tcttgatgtc ctgcggcagt ccgagcgcga
      661 tcgactttcc gtagtcgacc acctggatgc gctcacagac gcccatcacg actttcatgt
      721 tgtgttcgac gagcaggatg gtcagatcga aacggtctct gatctctctg atcaggtgca
      781 gcaagtcttc ctgttccgcc gggttcatgc ccgcggctgg ttcgtccagc aataacagtt
      841 ttggacgcgt tgcgagcgcg cgcacgatct cgagccggcg ctgcgaaccg tatggcagac
      901 tcgtgccgcc ttcatcggcg acgcgggcca ggtcgaaaat ctccagcaac tcgaaacagt
      961 attcgcgatg cttcttttcg tcgtttgcaa agcgcggcgt tcgcagcacg gcgtcgaaca
     1021 gtttctggcc catgtgaatg tggcatgccg tcatcacatt ttcgaggacc gacatgctcg
     1081 ggaagagccg gatgttttga aacgttcgcg acacgccgcg gccggcgatt tgataaggac
     1141 gcaggccgtc gattcgctgg ccgtcgaaat aaatttgtcc cgacgttggc tggtaaacgc
     1201 cggtgagcag gttgaagatc gtggttttgc cggcgccgtt tgggccgatg agaccgaaga
     1261 tctcgccttg cctaacgctc atgtcgagtt cgttgacggc gtacagtccg ccgaaacgaa
     1321 tcgtggcttt atcggttttc aggatcacgt cgcggccgcc gttgttagtg ctcatcgcag
     1381 gttctcacct cctggcgcgg gacgctccgg ttgcgttgcc acagtggacg ggtttgttgg
     1441 ggccgctgct ggaccgccgc ctgccgccgg ttcagtgcca cgcttcgcgc gtttgcgcca
     1501 cgctttgaga ggcgctgtcg aaccgagcaa tccctgcggc cgcgtgatca tgagaatgat
     1561 cagcagcagc gagtagatca ccatgcggta ctcggcaaag ccgcgcaatg cttccggcaa
     1621 caccgtcaac acgatcgcgc cgagaactga gccgacaatc gatccgagcc cgcccaggat
     1681 gatcatgatc aggatctcga acgacttgat gaactcaaac gacttcgggt tgagataacc
     1741 gtcgaagtgg gccagcagca caccgccagc gccggccatc gcggaagaga tcacgaacgc
     1801 cagcaccttg tagcgcgtcg tgttgacgcc catcgcttcc gcggcgagct cgtcttcacg
     1861 aatcgagatc aacgcccggc caaacgcgga gttgacgatg ttgtaaacga tcacgatcgt
     1921 cagaaccgcg accagaaaga tccagaagaa actcttaaca atcggaatgc cggaataacc
     1981 gcgcgcgccg ccgaccgctt cgatgttgtt cagaaagacc acgatgatct gtccgaaccc
     2041 gagcgtcacg atcgcgagat agtcgccgcg cagacgcagc gacggaatgc ccactgccaa
     2101 acccgcgagt ccggccacag cggcgccgat caaagtggat gcgcctaacg cgacgaccca
     2161 accgagcttg cctccgccga gcgagttcgc caggttcatg ccgtagttga cggagaagta
     2221 agccgacgaa tacgcgccga cagccatgaa acccgcgtgg ccgatcgaga actgtccggt
     2281 gaaaccgttg atcaggttga gtgagactgc gagcgtgatc gcgatgccgg aaagcatcag
     2341 gatacgaacg aagtacgggt tgagcattcg tccctggaag acgaaatcca gtccgatgag
     2401 agcggcgatg acgatcaggg caatgatgag attgcgcagg taccgaggca ctcttcgttg
     2461 tccttaaact ttctcctgcg cgaccgtacc gagaagtccg gaaggccgaa acagcagtat
     2521 caagatgagt atggcgaagg caacggcatc tttgtaggtt ggcgacaggt agccgacgac
     2581 cattgtttca gtgatgccga tcagcaggcc gccaagcatc gcgccgggga tgttgccgat
     2641 gccgccgagc accgcggcga cgaacgcctt gagcccggtc atcaggccca tcagcggatc
     2701 gatgcgcgga atcgccagcg ccaccatcac gccgccgacc gccgccagcg ccgacccgag
     2761 cgcgaacgtg aaggcaatca cgaagttcgt gttgatcccc atcagcttgg cgaccgacag
     2821 g
//
LOCUS       DASWTX010000224         2714 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_307138, whole genome shotgun sequence.
ACCESSION   DASWTX010000224 DASWTX010000000
VERSION     DASWTX010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2714)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2714)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2714
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307138"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..518
                     /locus_tag="VGD38_03470"
     CDS             <1..518
                     /locus_tag="VGD38_03470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727103.1"
                     /translation="VVAFVRWATARFSHSRRAGLAFPVIAVVVFVCFPAWTAYANRPH
                     YALYTNAFAADKAGYYFPHDEFYDDGLREAIKFVSEQAPQGATIAHETPAVTRHYLSV
                     FGRTDLNSQAISSAQFDVTSASGPVYVIAQRGRTYFENRDELEVVRARFRKVHTVTIE
                     GVTAAEVFVNQ"
     gene            515..2161
                     /locus_tag="VGD38_03475"
     CDS             515..2161
                     /locus_tag="VGD38_03475"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008253 - 5'-nucleotidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="HEY0727104.1"
                     /translation="MKKRSPFFYSLLTLVMMLTLVLVARSFVPDRVQITILGTTDLHG
                     NINPIDYYTNKPDNRGLAKVATLIKRIRKEHPNVLLVDSGDTIQGSPLESFHGRKNNR
                     PPDPMMLVMNSLNYDAMAVGNHEYNFGLKVLEKARAEANFPWLSANTYDIAKQQPHYK
                     PYIVKEVAGVRVGILGLTTPGVPNWDNPPNYAGLEFHNPVTEARKWVPILRDKDKADI
                     VVIAMHMGVGEDLSTGEARPGQVEHENEAVTIAKEVPGVDVIFMGHTHRDVPSLYING
                     VLLTQANHWGRHLARADVYLQKTGNGGWRVYAKSARTLPANDAVEPDPEVTKLAEPYD
                     RETQGWLAKIIGQSAEELTAKEARFRDTAILDLIQKVQLEAGKADVSMVASFNSEARI
                     AKGPVSVRDIAGLYVYENTLVVLEVTGQQLKDALEHSAKYFKTYVPGKPASDLVDEKI
                     PAYNFDIAEGVTYDLDISKPAGQRIQNLRFRGQPLSPTRKLRLATNNYRVNGGGGYTM
                     YKNAPVVYRSSEEIRELIIDWLEKNKTVPVKPNNNWRLVP"
     gene            2192..>2714
                     /locus_tag="VGD38_03480"
     CDS             2192..>2714
                     /locus_tag="VGD38_03480"
                     /inference="COORDINATES: protein motif:HMM:NF028007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEY0727105.1"
                     /translation="MPRLAAISGKLKGAIFTLSEEPLVIGRETAANLCLADASVSRRH
                     SKIEKKDEQYVITDLESLNGTFINDVPIRSRVLEHGDRVRVGDSQFVFLTHEGEASKS
                     SEVTIDEVQIVTGPTVHVRLDEAVYQMERNLGALMKVSTAINAIRGLDALLERLLELL
                     FEVVPAQRGAILLT"
BASE COUNT          621 a          815 c          741 g          537 t
ORIGIN      
        1 gtgtggtggc tttcgtgcgt tgggcgactg cgcgtttctc ccactcgcgg cgtgcgggtc
       61 tcgcgttccc cgtcatcgcg gtcgtggtgt tcgtctgttt tccggcatgg accgcatacg
      121 cgaaccggcc acattacgcg ctctacacaa acgcgttcgc cgccgacaaa gccggttatt
      181 actttccgca cgacgagttt tacgacgacg gactgcgcga agcgatcaag ttcgtttccg
      241 aacaagcgcc acagggagca acgattgctc acgaaacacc ggccgtcacg cgtcactacc
      301 tttccgtctt tggccgcacc gatctaaact cgcaggcgat ctcctcggcc cagtttgatg
      361 taacatcagc gtccggtccc gtttacgtca tcgcacaacg cggccgcacg tatttcgaaa
      421 accgagatga gctcgaagtt gtgcgggcca ggtttcgtaa agtgcataca gttacaatcg
      481 aaggtgtcac ggccgctgag gtcttcgtga atcaatgaag aaacgttcac cgtttttcta
      541 ctcgcttctg actctggtga tgatgctgac gctcgtgctc gtggcgcgca gcttcgtccc
      601 cgatcgcgtt cagatcacga ttctcggcac gaccgatctg cacggcaaca tcaatccgat
      661 cgattattac accaacaaac ccgacaaccg cgggctcgcg aaagtcgcca cgctcatcaa
      721 gcgcatccgc aaagaacatc cgaacgtcct gctcgtcgat tcaggcgaca cgatccaggg
      781 ctcgccgctg gagtcgtttc acggccgcaa aaacaaccgg ccgcccgacc cgatgatgct
      841 cgtgatgaat tctttgaact acgacgcgat ggccgtcggt aatcacgagt acaacttcgg
      901 tctcaaggtg cttgaaaaag cgcgtgctga agcaaacttt ccgtggctct ccgcaaacac
      961 ctacgacatc gcgaaacagc aaccacatta caaaccctac atcgtgaaag aagtcgccgg
     1021 cgtgcgtgtc ggcattctcg gtttgacgac gccgggcgtg ccgaactggg acaatccgcc
     1081 gaactacgca gggctcgagt ttcacaaccc cgtaaccgaa gcgcgcaagt gggtgccgat
     1141 tttgcgcgac aaagacaagg ccgacatcgt cgtcatcgcg atgcacatgg gtgtcggcga
     1201 agatttgagt acgggcgaag caagaccggg ccaggtggag cacgagaacg aagcggtcac
     1261 gatcgcgaaa gaagttcccg gcgtggacgt catcttcatg ggccacacgc accgtgacgt
     1321 gccttcgctt tacatcaacg gcgttctgct cacgcaggca aaccattggg gcaggcatct
     1381 cgcccgcgcc gatgtttact tacaaaaaac cggtaacggc ggctggcgtg tctacgcgaa
     1441 atccgcgcgc acgttgccgg ccaacgacgc agtcgaaccc gatccggaag tcacgaaact
     1501 cgccgaacct tacgacaggg aaacacaagg ctggctcgcg aaaatcatcg gccaatcggc
     1561 tgaagaactg acggcgaaag aagcgcgttt ccgcgacacg gccattctcg atctgatcca
     1621 gaaagtgcag ctcgaagcgg gcaaggccga cgtgtcgatg gttgcgagtt tcaattccga
     1681 agcgaggatc gcgaaaggtc cggtgagcgt gcgcgacatc gccgggcttt acgtttacga
     1741 aaacacgctc gttgtgctcg aagtaacggg tcaacaatta aaggacgcgc tcgaacactc
     1801 ggcgaagtat ttcaagacct acgttcccgg caaacccgcg tctgatttag tcgacgaaaa
     1861 gattccggcg tacaacttcg acatcgcgga aggcgtcact tacgatctcg acatttccaa
     1921 acccgccggc caacggattc agaaccttcg ttttcgcggc cagccgcttt cgcctacccg
     1981 gaagctgcgg ctcgcgacga ataactatcg cgttaatggc ggtggtgggt ataccatgta
     2041 caagaacgcg ccagtcgtct atcgttcgag cgaagagatt cgcgagctga tcatcgactg
     2101 gctcgagaaa aacaaaacgg ttcccgtcaa accaaacaac aactggcgcc tcgtgccgta
     2161 agccagtgct tagttttacg gctttcccca gatgcctcga cttgcagcca tttcaggcaa
     2221 actgaaggga gcgatcttca ctctttccga agagccgctc gtcattggtc gtgagactgc
     2281 cgcgaacctc tgcctcgcgg acgcgtctgt ttcccgccgc cattcgaaga tcgaaaagaa
     2341 agacgagcag tacgtcatca ccgatctcga gagcctcaac ggcacgttca tcaacgacgt
     2401 tccgatccgc agccgcgtgc tcgaacacgg cgaccgcgtg cgcgtcgggg attcgcagtt
     2461 tgtttttctg acgcacgaag gcgaggcttc caaatcgagc gaagtcacga tcgacgaagt
     2521 gcagatcgta accggtccga cggtccacgt gcggctcgac gaagccgttt accagatgga
     2581 gcgcaacctg ggcgcgttga tgaaagtctc gacggccatc aacgcgattc gcggtctcga
     2641 cgcattgctc gaacgcctgc tcgaactctt gtttgaagtc gtgccggcgc aacgcggcgc
     2701 gatcctgtta acca
//
LOCUS       DASWTX010000225         3721 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_240676, whole genome shotgun sequence.
ACCESSION   DASWTX010000225 DASWTX010000000
VERSION     DASWTX010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3721
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240676"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..855
                     /locus_tag="VGD38_03485"
     CDS             <1..855
                     /locus_tag="VGD38_03485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727106.1"
                     /translation="VTVSLSYVNTRGLHQLRARNINAPVVLDQRPFPTSDNIYQYETS
                     GIYKQQLFVVNSSVRLNPRFSLNAHYTLGKAEGDTDGAGSFPAESYNLATEFGRASTD
                     IRHRFTLAGNIETRWGLSFSPLIVALSGAPYNIITGADRNNDSLFSDRPSFATDLTRP
                     SVVQTPLGAFDLAPLPGSTIIPRNFGDGPGYFSVNLRVSKTINFGPLQRPAAAAQAAE
                     VRPYRLTFSVAVANLFNHTNPGPPIGNLTSPVFGNSNSLAQFTPLNTGGSAATSNRSV
                     ALRAQFNF"
     gene            complement(930..2255)
                     /locus_tag="VGD38_03490"
     CDS             complement(930..2255)
                     /locus_tag="VGD38_03490"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013682.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006486 - protein glycosylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 47 protein"
                     /protein_id="HEY0727107.1"
                     /translation="MVCGSSFAQPGDLRAAVKAEFLHAWNGYKKYAWGHDDLKPLSKT
                     HHDWYAQPLLMTPVDALDTMIIMGLDEEAAATKQYIVDNLSFDKDIDVQNFEITIRLL
                     GGLLSSYQLTNDKRLLNLAEDLGNRLLPVFNSPTGMPYRYVNLKTGKTSKPISNPAET
                     GTLLVEFGTLSKFTGKPIFYDKAKRALVETYNRRSKIGLVGEWINVETGEWTNTDSHI
                     SGAIDSYYEYLLKCWLLFGDRDCKRMWDNSIVAINKYLQDNWKGELWYGHADMNTGVR
                     GATTFGALDAFFPAVLALSGDLNRARRLQQSAFSMWWVARIEPEVFDYRARKITSPGY
                     PLRPEIVESAYYLWRYTKDHRYRNMGAQLWFDFVQHCRTEVAYAALKDVTTKEKADSM
                     QSFLFAETFKYFYLLFSSPNTLDINSVIFNTEAHPIKRFKPAPIATAVN"
     gene            complement(2305..3705)
                     /gene="cysS"
                     /locus_tag="VGD38_03495"
     CDS             complement(2305..3705)
                     /gene="cysS"
                     /locus_tag="VGD38_03495"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR00435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEY0727108.1"
                     /translation="MLRFRNTLTGRIEEFRPMNEGEVRMYYCGPTVWEYGHIGNFRSA
                     VAADIVRRYLKFKGYKVTHVMNITDVEDRIIAKSQERGVTIDEYTAKYIDALWEDFDA
                     LGNERPEVVPRATRHIPEMVTLIEKLLDTGHAYKSDGSIYYRISSFPEYGKLSKINFA
                     GNIAGASERVDTDKYEKEDARDFALWKEPASETEPAWETDIGRGRPGWHIECSAMSMK
                     YLGETFDIHAGGIDLVFPHHENEIAQSEGATGKPFVRYWIHFEHLKVEGETMSKSKGN
                     YYTFRDIAAKGFSPAAIRYFLLSVPYNKQLNFTFDALAGAEKTVASLRDFRARLSEAK
                     TVEGSNDQLHEAAQRALTEFEAGMDDDLNTSVALAAVHNLSREVNTALARKQVKADNQ
                     RELLEVIDRIDTVLNIFGNTQREMLDSEVQTMIDERQEARHRRDFGRADEIRRELADR
                     GIILEDTKDGVRWKRK"
BASE COUNT          706 a         1053 c         1082 g          880 t
ORIGIN      
        1 gtgacggtca gcttgagtta cgtgaacacg cgcggactgc accagttgcg agcgcgaaat
       61 atcaatgcgc ctgttgttct cgatcagcgt ccgtttccaa cgagcgacaa catctaccag
      121 tacgaaacca gcggcatcta caaacaacag ctctttgtcg tgaacagcag cgtgcggttg
      181 aatccacggt tttcgctgaa cgcgcattac acgttgggga aggctgaagg cgatacggat
      241 ggagcgggga gttttccggc ggagtcgtac aatctcgcga ctgagtttgg ccgcgcctcg
      301 accgacatcc gtcatcgctt cactctcgcg ggaaacatcg agacacgctg gggattgagt
      361 ttttcgccgc tgatcgtcgc gctctcgggc gcgccttaca acatcattac gggcgctgac
      421 cgtaacaacg attcgctctt cagcgaccgg ccgagcttcg ccacggatct cacgagaccg
      481 tcagtagtgc agacgccttt aggcgctttc gatctggcgc ccttgcccgg cagcacgatc
      541 attccgcgaa acttcggcga tgggccaggt tacttttccg tgaacctgcg cgtttcgaag
      601 acgatcaatt ttggtccgct gcaaagacct gccgcggctg cgcaggccgc ggaagtgcgt
      661 ccgtaccggc tcacgttcag cgtggccgtc gcgaacctgt tcaatcacac gaaccccgga
      721 ccaccgattg gcaatttaac atcgcctgta ttcggcaact cgaattcgtt ggcccagttc
      781 acgccactca acaccggggg aagcgccgcg accagcaatc gcagcgtcgc gctgcgcgcg
      841 cagtttaatt tttgattttc ggcgccaata gcgaccgcat tcaatgtgct atgacaatca
      901 ccgctctctc aagccagcaa tgttgttgct cagttgactg cggtcgctat tggcgccggt
      961 ttgaatctct tgatcgggtg cgcttccgtg ttgaagatca cgctgttgat gtcgagcgtg
     1021 ttcggcgatg agaagagcag gtagaaatac ttgaaggtct ccgcgaagag gaagctctgc
     1081 atcgagtcgg ctttttcttt tgtcgtcacg tctttcaacg ccgcgtaagc aacctcggtg
     1141 cggcagtgtt gcacgaagtc aaaccaaagc tgcgcgccca tgttgcggta gcggtggtcc
     1201 tttgtgtagc gccaaaggta gtaagcggat tcgacgatct cgggccgcag cggataaccc
     1261 ggcgacgtga tcttgcgcgc gcgatagtca aacacttccg gttcgatacg agccacccac
     1321 cacatcgaga acgccgactg ctgcaggcgt cgtgcgcggt ttagatcgcc tgacaaagcc
     1381 agcaccgcgg ggaagaacgc gtcgagcgcg ccgaaggttg tggcgccgcg cacgccggtg
     1441 ttcatgtcgg cgtggccgta ccagagctca cctttccagt tgtcctgcag atacttgttg
     1501 atcgcgacaa tgctgttgtc ccacatccgc ttgcagtcgc gatcgccgaa gagcagccag
     1561 cacttcaaaa ggtattcgta gtaactgtcg atcgcgccgc ttatgtgact gtcggtgttg
     1621 gtccattcgc cggtttcgac gttgatccat tcgccgacga ggccgatctt cgaacgccgg
     1681 ttgtacgttt cgaccagcgc gcgtttggct ttgtcgtaga agatcggttt gccggtgaac
     1741 ttgctgagcg tgccgaattc gaccagcagt gttcctgttt ccgcggggtt gctgatcggc
     1801 ttgctggtct tgcccgtttt caggttcacg tagcggtaag gcatgccggt cggcgagttg
     1861 aaaacaggca acaggcgatt gccgagatct tccgcgagat taagcaggcg tttgtcgttg
     1921 gtgagttgat agctgctgag cagtccgccg agcagcctga tcgtgatctc gaagttttga
     1981 acgtcgatgt ctttatcgaa cgagagattg tcgacgatgt actgcttcgt tgccgctgct
     2041 tcttcgtcga ggcccatgat gatcatggtg tcgagcgcgt cgacaggcgt catcaagagc
     2101 ggttgtgcgt accagtcgtg gtgagttttc gagagcggct ttagatcgtc gtggccccag
     2161 gcgtatttct tgtagccgtt ccacgcgtgc aggaactctg ctttgactgc ggcgcggagg
     2221 tctccaggct gcgcgaaaga ggaaccacag accacacaga ttacacaggc tgcatagacg
     2281 gctctgcgta acctgcggag ggttttactt gcgtttccag cgtacgccat ctttggtgtc
     2341 ttcaagaatg atgccgcggt cggcgagctc gcgacgaatc tcgtcggcgc gtccgaagtc
     2401 gcggcggtgg cgcgcttcct gacgttcgtc gatcatcgtt tgcacttcgc tgtcgagcat
     2461 ctcgcgttgc gtgttgccga agatgttcag cacggtgtcg atacgatcga tcacttcgag
     2521 caactcgcgc tggttgtcgg ccttcacctg cttgcgtgcg agcgccgtat tcacttctcg
     2581 tgaaagattg tgtaccgcag ctaaagcaac agacgtattc aagtcgtcgt ccattcctgc
     2641 ttcaaattcc gttaaagctc gctgggccgc ttcatgcagt tggtcgttag atccctccac
     2701 ggttttcgct tcgctcaagc gcgccctgaa gtcacgcagg ctcgccaccg tcttctccgc
     2761 gcccgcgagc gcgtcgaacg tgaagttgag ctgcttgttg tacggcacac tcagcaggaa
     2821 ataccgaatc gcagccggcg agaaaccctt cgcggcaatg tcgcgaaacg tgtagtagtt
     2881 gcccttcgac ttcgacatcg tctcgccttc gaccttcaga tgttcgaagt gaatccagta
     2941 acgcacgaac ggtttgccgg tcgcgccttc actctgcgcg atctcgtttt cgtgatgcgg
     3001 gaaaacaaga tcgatgccgc cggcgtgaat gtcgaaagtc tcgcccagat acttcatcga
     3061 catcgcggag cactcgatgt gccaacccgg acgtccgcgg ccgatgtccg tctcccacgc
     3121 gggttcggtt tcgcttgcgg gttctttcca caacgcgaag tcgcgcgcgt cttccttctc
     3181 gtatttgtcg gtgtcgacgc gctcgctggc gccggcgatg ttgcccgcga aattgatctt
     3241 cgaaagcttg ccgtattcgg gaaacgaaga gatgcggtaa tagatggagc cgtcagactt
     3301 gtaagcgtga ccggtgtcga ggagcttctc gatcagcgtg accatctccg gaatgtgacg
     3361 ggttgcgcgt gggaccacct cgggccgttc gttgccgagc gcgtcgaagt cttcccaaag
     3421 tgcatcgatg tacttcgcgg tgtactcgtc gatcgttacg ccgcgttcct gcgacttcgc
     3481 gatgatgcgg tcctcgacgt ccgtgatgtt catcacgtgc gtgactttgt agcctttgaa
     3541 cttgaggtaa cggcggacga tgtcggcggc gacggcgctg cggaagttgc cgatgtggcc
     3601 gtattcccaa acggttggac cacagtaata catgcgaacc tcgccctcgt tcatcgggcg
     3661 aaactcttcg atacgtccgg tgagtgtgtt acggaatctc aacattgcag accaatacta
     3721 a
//
LOCUS       DASWTX010000226         3326 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_2246, whole genome shotgun sequence.
ACCESSION   DASWTX010000226 DASWTX010000000
VERSION     DASWTX010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3326
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2246"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2054
                     /locus_tag="VGD38_03500"
     CDS             <1..2054
                     /locus_tag="VGD38_03500"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-54-dependent Fis family transcriptional
                     regulator"
                     /protein_id="HEY0727109.1"
                     /translation="LAMVLPHAINLDRFLTVIVSELGRMMNVDRCDVIQLKSAGELRI
                     SHEWRISNDVPSSLGTVIPLDLNQLSEHVDIRRPIRFDDIAAVGNNQRVRFLAESLGT
                     RSLLVVPVILGDDVLGLVGLHTTRTPREWLDDEVSFLQSIAGQIAIGYQYTRLYTDKE
                     REAETKRALLSIANALNARSDFREVSSLVLERAIALVGADYSALGVLDPAGSRISLAA
                     FKAAPHATTDSVQGLFDSHGKSLDVTAFPAMVEVLAQGKTLRLLETDLPFPVRLLFNS
                     VLGGRAALVAPVRVGGHTFGLLGVVWSEARERFDDHEVALVEGIADQIGTALERDQLS
                     AEIMHLRSALHERYGEERIIGQTPAIRRAIELAKSVADTQTTVLIEGESGTGKELLAN
                     LIHFNSGREDQPYVKLNCGAIPETLLESELFGHEKGAFTDARALRRGRFEEANGGTLF
                     LDEVGEMSLSAQVRLLRVLQDGEFTRVGGSEVIKTDVRVVAASNVDLKRAVELGTFRQ
                     DLFYRLSVFPITLPPLRERPEDIHPLVIHFLEHYKQKTGRYIPGISKDALQALITYEW
                     PGNVRELENAIERAVIIASGRQIELEDLPEAISKIALRDRDRVKVERAKAASEGRTTT
                     FEVTVPSSMEEIERQAIEATLDYTAGDKSHAARALGIGRKTLYRKLEQYNGGSGHGPE
                     Q"
     gene            2151..2585
                     /locus_tag="VGD38_03505"
     CDS             2151..2585
                     /locus_tag="VGD38_03505"
                     /inference="COORDINATES: protein motif:HMM:NF024143.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HEY0727110.1"
                     /translation="MGYDEYRRDSGDGISTRLTYLLIGGGIGAILALLFAPKSGHELR
                     GDIADATRKGIDRSREAAQQLGDRAGEYYEATRTRAGELYSQAAERVGEVAQTAREAA
                     ARQTGTVAAAIDAGKKAYQEEKRKTEMSGRIEAAPNYGEKTN"
     gene            2595..3167
                     /locus_tag="VGD38_03510"
     CDS             2595..3167
                     /locus_tag="VGD38_03510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727111.1"
                     /translation="MTSLALQMNANDPMFWIMVVIAASFIVIAIAMVAIAVFVSRAVK
                     SVGRLEEKVEPLIERVTLMSEQGKEIAVQGKLIAEQFNAVSGHLSTATMHFSESLAII
                     KDEVAELKALVSDTAVEARDKVELVSRTIDRTHHQVAVTTDFIQTKVIEPAREMAAIM
                     AGFRRGLEVLVAPVPKPINQTYGEDEMFIG"
BASE COUNT          698 a          906 c         1034 g          688 t
ORIGIN      
        1 gcctcgcgat ggttctccca cacgctatca atctcgatcg tttcctgaca gtcatcgttt
       61 ccgagctcgg ccgcatgatg aacgtcgatc gctgcgacgt gattcagttg aaatcggcgg
      121 gcgaactgcg catcagccac gagtggcgta tttcgaacga tgtgccttcc agtttgggga
      181 cagtcattcc gctcgatctc aaccagcttt ccgagcacgt cgatattcga cgcccgattc
      241 gtttcgacga catcgcggcg gttggaaaca atcagcgcgt gcgatttctc gcggagagtt
      301 tgggcacgcg ttcgctgctc gtcgtgccgg tgatacttgg cgacgatgtt ctgggtctcg
      361 ttggtttgca cacgacgcgc acgccgcgcg agtggctgga cgatgaggtt tcgtttctgc
      421 aatcgatcgc cgggcagatc gcgatcggtt accagtacac gcgtctttac accgacaagg
      481 agcgcgaagc ggaaacgaag cgcgcgttgt tgtcgatcgc gaatgcgttg aatgcgcgct
      541 cggattttcg cgaagtgtcg tcgctggtgt tggaacgcgc gatcgcgctt gttggcgcgg
      601 attattcggc gttgggcgtg ctcgatccgg cgggaagccg catcagtctg gcggctttca
      661 aagccgcgcc gcacgctact acggattctg ttcaaggttt attcgacagc cacggaaagt
      721 cgctcgatgt gacggcgttt cccgcgatgg tggaagtgct ggcgcaggga aaaacgctgc
      781 ggttactaga aaccgatctg ccgtttccgg ttcggcttct gttcaattcc gtgctcggcg
      841 ggcgtgcagc gctggtggcg ccggttcggg ttggcgggca cacgtttggc ttgctcggtg
      901 tagtttggag tgaagctcgc gaacgttttg acgatcacga agtcgcattg gttgaaggca
      961 tcgccgacca gatcgggacg gcgctcgaac gcgaccagtt gtcggccgag atcatgcacc
     1021 tgcgcagcgc gcttcacgaa cgttacggcg aagagcgcat tatcggacag acgcccgcga
     1081 ttcgccgcgc gatcgagctc gcgaagagtg ttgccgacac gcagaccacg gttttgatcg
     1141 aaggcgaatc cggtaccggc aaagagctgc ttgcgaacct gatccatttc aactccggcc
     1201 gcgaagatca gccgtatgtg aagttgaact gcggcgcgat tcccgagacg ttgctcgagt
     1261 ccgaattgtt tggacacgag aagggcgcgt ttacggatgc gcgcgcgttg cggcgaggac
     1321 gttttgagga agcgaacggc ggcacgttgt ttcttgatga agtcggcgag atgagtttat
     1381 cggcgcaggt gcgtttgctg cgcgtgttgc aggacggaga gttcacgcgc gtcggcggca
     1441 gtgaagtgat caagactgac gtgcgcgtag tcgcggcttc gaacgtcgat ctcaagcgcg
     1501 ccgtcgaact cggcaccttc cggcaagatt tgttctatcg tttatctgta tttccgatca
     1561 cgctcccgcc tttgcgggag cgcccggaag acattcatcc gctcgtgatt catttcctcg
     1621 agcactacaa acagaaaacc ggccgctaca ttccggggat ttcgaaagac gcgttgcagg
     1681 cgttgatcac ttacgagtgg ccgggcaatg ttcgcgagct cgaaaacgcg atcgaacggg
     1741 ccgtgatcat cgcttcgggt aggcagatcg agttggaaga cctgccggaa gcaatcagca
     1801 agatcgcgtt gcgcgaccgc gaccgcgtca aggtcgaacg cgcgaaggcc gcgagcgagg
     1861 gccgcacgac gacgtttgaa gtcacggttc cgtcgtcaat ggaggagatc gaacgccagg
     1921 caatcgaagc cacgctcgac tacaccgccg gtgataaatc ccacgccgcc cgggctttag
     1981 gtatcggccg caaaacgctt taccggaagc tggagcagta caatggcggt tccgggcacg
     2041 gcccagagca ataggcagtt ggaggataat ttgtgctata gtccaacgcc tcgtattttg
     2101 aggaaaccag cgaagtaata gggcttcgct tagaagaaag gacccatcct atgggatacg
     2161 acgaatatcg gagagatagc ggagacggca tctctacacg cttaacatat ttacttatcg
     2221 gcggtggtat cggcgccatt ctcgcgctgc tgttcgcgcc caagtcgggc catgaactgc
     2281 gcggcgatat cgccgacgcg acccgcaaag gcatcgatcg ttcacgcgaa gcggcccaac
     2341 agttgggcga ccgcgccggc gagtattacg aagcgacacg cactcgtgcc ggtgaactct
     2401 attcgcaggc ggctgaacgg gtcggcgaag tggcccagac cgcacgcgaa gcagcggccc
     2461 gtcagaccgg aaccgtagcc gcggcgatcg acgccggcaa gaaggcttac caggaagaga
     2521 agcggaagac cgaaatgtca ggccgcatcg aagccgctcc gaactacgga gaaaagacca
     2581 actaatcggc gccgatgact agccttgctt tacagatgaa tgccaacgat ccgatgttct
     2641 ggatcatggt tgtcattgcc gcttcgttta tcgtgatcgc gatcgccatg gtggcgatcg
     2701 cggtcttcgt tagccgcgct gtgaagtccg ttgggcgtct tgaagaaaag gtggagccgc
     2761 tcatcgagcg cgttaccctc atgagcgaac aagggaagga aattgccgtg cagggcaagc
     2821 tgatcgccga gcagttcaac gctgtctcgg gtcacttgtc gactgccacg atgcatttct
     2881 cggagtcgct cgcgatcatc aaggacgagg tggctgaact gaaagcgctc gtgagcgaca
     2941 cggctgtcga ggcgcgcgac aaggtcgaac tggtcagcag aacgatcgat cgcacgcacc
     3001 accaggtcgc ggtaacgact gatttcattc agacgaaagt catagagccg gcgcgcgaga
     3061 tggccgcgat tatggcgggc ttccgccgcg gcctcgaggt tctcgttgcg ccagtgccga
     3121 agcccattaa tcagacgtac ggagaggatg agatgtttat cggttagcaa gagccaatcc
     3181 ggtttagcaa acccgagtca tcgcatccgt gatggctcgg gtttttcgtt gatgttagta
     3241 tctaccactt acgctgatgt ccacagaaac gccgctcgat ctcaagaaga ccgttaactt
     3301 gccgcagact ggcttctcgc aaaaag
//
LOCUS       DASWTX010000227         1712 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_328778, whole genome shotgun sequence.
ACCESSION   DASWTX010000227 DASWTX010000000
VERSION     DASWTX010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1712
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328778"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..212)
                     /locus_tag="VGD38_03515"
     CDS             complement(<1..212)
                     /locus_tag="VGD38_03515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727112.1"
                     /translation="MTLITVALISLLSGFLNIDSVHAAFEKQDPDAGSLQSLDKDGKP
                     SGHCPLKRTSVKAEISGFLSRVTVTQ"
     gene            662..>1712
                     /locus_tag="VGD38_03520"
     CDS             662..>1712
                     /locus_tag="VGD38_03520"
                     /inference="COORDINATES: protein motif:HMM:NF017380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF763 domain-containing protein"
                     /protein_id="HEY0727113.1"
                     /translation="MKRSGTADLPLHGGRVPQWLAQRMTALGTGITEAIVHDYGTSGF
                     LSRLSDPFWFQAFGAVMGMDWHSSGITTSVMGALKRGLAPRANELGLFICGGRGRFSR
                     NTPNELRLLGERRGFDADALVRTSKLTARIDNNAIADGFQIYLHNFVVTADGEWAVVQ
                     QGLNDQNGTARRYHWHSPSVKDFVTEPHTGIVGENQGEIVNLVDNQAKPAQAALLEIA
                     RERPEKTLQAAHHLKLPAHHEVRAKDVDLKRLGAVLAVAYDRDLHNFAELLLLENLGP
                     RTLQSLALVAEVVHGAPSRFSDPARFSFAHGGKDRHPFPVPLKTYDESLNVLRKGLDA
                     AKVGDKEKLDAFKRLN"
BASE COUNT          378 a          499 c          468 g          367 t
ORIGIN      
        1 tcctgtgtga ccgtgacgcg agataagaac ccgctgatct ctgctttgac actggtgcgt
       61 ttgagcgggc aatggccgct cggcttccca tccttgtcga gcgactgcag tgaacccgcg
      121 tcagggtcct gcttctcaaa agccgcatga accgagtcga tattaagaaa gccggagagc
      181 agggagataa gagcgactgt tattaaagtc actacggacc agttgagaag cgatcgccgg
      241 gacatggact tttcctttca gcaggcacac tgctgcatat gcgggcgaac gccaacgtcg
      301 ctgccgggtg tgtcgctggt tgttgttttt aacgaggccg aagatgagcg gcctcagttc
      361 ttactcttgc taaggaacca tgcgggggag accgcgcgag gaactgtatt ggctaccact
      421 attgatgcat tttgtttctc gtaggtagcc tgcaaattaa aaaactttcc ttcgccggtg
      481 tgcagtcgtg ctagattagg tgtcaccgcc ctgaactctc acagtacttt ccaaacgagg
      541 tgaacacatg atccagcaac tgtgggatag tttcgtaatg ttgattccgg tattctttct
      601 gctcacgatg atcttcggtg ccggttttta tatcggccgc gtgagtaaga aagatagcta
      661 gatgaaacga tccggaactg ccgatcttcc gcttcatggc ggccgtgttc cgcagtggct
      721 tgcacaacgc atgaccgctc tcggcacggg catcaccgaa gcgatcgttc atgactacgg
      781 cacttccggt tttctttccc gcctcagcga tcctttctgg tttcaggcat tcggcgcagt
      841 catgggcatg gactggcatt cgtcggggat caccacgtca gtgatgggcg cactcaaacg
      901 cggactcgcg ccacgcgcaa acgagctcgg actgttcatc tgcggtggac gcgggcgctt
      961 ctcgcgaaac acgccaaacg aattgcggct gctcggcgaa cgtcgcggct ttgacgccga
     1021 cgcgcttgtg cggaccagca agctcaccgc acgcatcgac aacaacgcga tcgccgacgg
     1081 cttccagatc tatctgcaca actttgtcgt gactgcggac ggcgagtggg cggtggtcca
     1141 acaaggattg aatgatcaaa acggaacggc ccgtcgttat cactggcatt cgccttccgt
     1201 caaagatttc gtgaccgaac cacacacggg catcgtcggc gagaaccagg gagaaatcgt
     1261 gaacctcgtc gacaaccagg cgaaaccggc gcaagcggcg ctactcgaga ttgctcgcga
     1321 acgtccggag aaaactctac aagctgcgca tcacttgaaa ctgcccgcac atcatgaggt
     1381 gcgcgctaag gacgtcgatc tcaaacgtct cggagctgtc ctcgccgtag cttacgacag
     1441 ggatctccat aacttcgctg aactactact actcgaaaac ctcggcccac gaacactgca
     1501 atcactcgcg ctcgtcgccg aagtcgttca cggcgcgccg agccgtttct ccgatccggc
     1561 acgtttctca ttcgcgcacg gcggcaagga tcgacacccg ttcccggtgc ctctcaaaac
     1621 ctacgacgag tcgctgaacg tcctccgcaa aggcctcgac gccgcgaaag tcggcgataa
     1681 agagaagctc gacgccttca agcgtctgaa cc
//
LOCUS       DASWTX010000228         2072 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_262667, whole genome shotgun sequence.
ACCESSION   DASWTX010000228 DASWTX010000000
VERSION     DASWTX010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2072
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262667"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..360
                     /locus_tag="VGD38_03525"
     CDS             <1..360
                     /locus_tag="VGD38_03525"
                     /inference="COORDINATES: protein motif:HMM:NF012922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEY0727114.1"
                     /translation="IEGDKDPMDICVLSEKSFAHGSFFLHARPIGGLRMIDGQQADDK
                     IIAVLEDDLAYGRILEIADVPQGLVDRLQHYFLSYKQLPGDEPKKVEITHVYDRTEAL
                     DVITRSLRDYQEEFGDE"
     gene            complement(632..991)
                     /locus_tag="VGD38_03530"
     CDS             complement(632..991)
                     /locus_tag="VGD38_03530"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S1C family serine protease"
                     /protein_id="HEY0727115.1"
                     /translation="MPQILKYGSVRRPKLGISTRDVAAFRNQVDLPTSDGVLIIQVAR
                     GSGAAAAGLRGMQATEMGDYELGDIIVGIDNDKVGNSDDLFRVLDKHQIGEVVQVQIW
                     RNGRRMSVPVRLMESRQ"
     gene            complement(1016..1819)
                     /locus_tag="VGD38_03535"
                     /pseudo
     CDS             complement(1016..1819)
                     /locus_tag="VGD38_03535"
                     /inference="COORDINATES: protein motif:HMM:NF024758.4"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
BASE COUNT          463 a          570 c          592 g          447 t
ORIGIN      
        1 atcgaaggcg acaaagatcc gatggacatc tgtgtcttgt cggaaaaaag cttcgctcac
       61 ggcagtttct ttctgcacgc acgtcccatc ggggggctca gaatgatcga cggccaacag
      121 gctgacgaca agatcatcgc cgtgctggaa gacgatcttg cttacggacg aattctcgag
      181 attgctgatg tgccgcaggg actcgtcgat cgtttgcagc actacttcct gagttacaag
      241 cagcttccgg gtgacgaacc gaagaaggtc gagatcacac acgtttacga tcggacagag
      301 gcgctggacg tgatcacgcg cagcctgcgt gattaccagg aagagtttgg cgacgaataa
      361 agcgcgagtt aaaaacgccg ccggaagtgt tcttcaatcc cgcagcgggg acatatcaaa
      421 ccgctgcggg attcgtctgt ccacttggcc agcgccaatg gttgtgggtg atgaacggcg
      481 tggttatgcc ggtcgtgctg ccgtcgttca gcagcttccg aactacagtg cttgcatagc
      541 cagccgtaac ccacgttgaa gaagtgggcc gtctggtgca taaacctggt tcaaacctga
      601 agcgctcagg tcccagatcc cagacctgag ttcactgtct tgattccatc aggcgcaccg
      661 gcacggacat tcgcctgccg ttacgccaga tctgcacttg tacgacttcg ccgatctgat
      721 gcttgtcgag gacacggaac agatcgtctg agttgccgac tttatcgttg tcgatgccga
      781 cgatgatgtc gcccaattcg taatcgccca tctcggtcgc ctgcattccg cgcagtcctg
      841 ccgccgcggc gccactgcca cgcgcgacct gaatgatcag gacgccatcc gaagtcggaa
      901 gatcaacctg attacgaaac gccgcaacgt cgcgggtgct gatcccgagt tttggacgtc
      961 ttaccgaacc gtatttcaga atctgcggca cgatgcgctt ggcaatgccg accggaactg
     1021 caaagccaac gcccgccgaa ctgcctgacg gcgaaagaat ctgcgagttg attccgatca
     1081 tgcggccgtg tgagtcgagt agtggtccac ctgagttacc gggattgatc gacgcgtcgg
     1141 tttgaatcgc gccctcgatg agacgattgt tacgcgcgcg aatcggacgt tgcagaccgc
     1201 tgatcacgcc ggtcgtcaac gtacggtcaa gaccaaacgg ataaccgatc gccaaaacct
     1261 attgtccgac gaccagtttt tcggaatcgc cgagcggaat tacggtcaat cctccggccg
     1321 gtttttctgt tagacgaatt accgcgaggt ccgtgtcggg atcaccgccg accacttccg
     1381 cgggatagtc tttctttcca ccgagactga cggaaagctt ttgcgcgcct tcgatgacgt
     1441 gatagttcgt cagaatgttt ccttcctggt ccaggatcga accagaaccc gatccttcct
     1501 gctgctcgac gtatccgaaa aagtcgcggg cgtaagaggt tgaatgaatg aacacgacgc
     1561 ccgggcttag cgtgcgatag acttcgatat tgttctgttc gtcagttgaa gttgccgggt
     1621 ccgtgattcc ggcgggcgcg gtctccgagt acgcggcctg ggaaggttgg aaacgattgt
     1681 taatacgatc gaccagcgtg acgatgcctg cggcaaacaa acctgaaata agcgcgacta
     1741 ataaaatttg gcgtgtggaa agtcggtaca taaaacttct tccctctctc ggtagacttt
     1801 tttgcagtag cggcagcatg gcgctaggat gcttttcgac cagaccctcg ttgtgtgtgt
     1861 ccgcgttgag ctgggccaga gcgacacaac tttaagacag gtggcgtttt gagttcaagc
     1921 ttcaggcaaa cagcgaaacg acagccgcgg ggaggctcgt gacgtagacg agaacctgca
     1981 ccggacctgc ccagccgagc gcgagacagc cggttgcagc gtgtacgatc atcaggccgg
     2041 cgtaaacgac gagagcaacg gtaagtccgc gt
//
LOCUS       DASWTX010000229         3200 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_393506, whole genome shotgun sequence.
ACCESSION   DASWTX010000229 DASWTX010000000
VERSION     DASWTX010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3200)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3200)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3200
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_393506"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1404)
                     /gene="glnA"
                     /locus_tag="VGD38_03540"
     CDS             complement(<1..1404)
                     /gene="glnA"
                     /locus_tag="VGD38_03540"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEY0727116.1"
                     /translation="MNPKTVLKYATDQGAKFVSVRFTDLPGSWQHLTFPISELGEEQF
                     EDGFGFDASSIRGWAAIHESDMLLVPDATRYWMDPFSEQPTLCLIGSAVDPITKEGYA
                     FDPRSVAQRAESYLKFTGLADTAFFGPEAEFFVFDSVKFHNEQHSAGYAIDSDEGHWN
                     SGRDANEFAGSNLGYRIRPKEGYVPVPPVDSLADLRSEISLTLEKCGVHVECHHHEVA
                     TAGQCEIDFRYSTLLGTADNLQIFKYVVRNTAHEYGKSATFMPKPLFGDNGSGMHVHQ
                     SLWKGEKPLFAGDGYAGLSEMARFYIGGLLKHAAAIVAFAAPTTNSYKRLVPGFEAPV
                     NLAYSARNRSAAIRIPMFSSNPKLKRLEFRPPDPSCNAYLAFAAMMLAGLDGVQNRID
                     PGDPLEKDIYDLSPEELKDVPTLPGSLDDSLKALENDHDFLLKGDVFSPQLIDKWISY
                     KRDREITPLRMRPHPLEF"
     gene            1782..>3200
                     /gene="speA"
                     /locus_tag="VGD38_03545"
     CDS             1782..>3200
                     /gene="speA"
                     /locus_tag="VGD38_03545"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF003763.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008792 - arginine decarboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006527 - arginine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HEY0727117.1"
                     /translation="MTTAIEQTLETYGIENWGAGYFDVNRKGNLIVRPVEGDPRSADL
                     KEIIDDLAKRGITAPVLLRFPQLVAAQVRKLQRAFSRSIREFEYQGTHMCVYPMKVNQ
                     QRSVVEEYLREGSRYDFGLEAGSKAELYAALALEQPSDSLLVLNGFKDQEFIELAFAG
                     AKVGKRVVIVIEKLNELDHVLTVAEREDGPLPMIGMRVKLYSKGSGRWEKSGGEAAKF
                     GLTTTELLEVIRRLEEADRMDMLKLLHFHIGSQLTDIKRIKNAMKEAARVYAKVYQMK
                     VPIDFLDVGGGMAVDYDGSKTAFDSSANYTAQEFANDVIYTIKQVCDDENVPHPTIIQ
                     ESGRFLAAYHAILVTNVLDEIETVVEDITPIEIGEDDPQVVIELGDLRESISVKNYRE
                     YYHDALEHREELFTLFNLGLISLEDRAKGEVLFWDVCERADKYAQQAKYVSEEFGELR
                     RLLSVKYLTNFSVFRSVPDHWAL"
BASE COUNT          763 a          884 c          877 g          676 t
ORIGIN      
        1 aaactccagc ggatgcgggc gcatgcgcag gggcgtgatc tcgcgatctc gtttgtagct
       61 gatccacttg tcaatcaact gcgggctgaa cacgtcaccc ttcaaaagga agtcgtgatc
      121 gttctccagc gccttcagtg aatcgtcgag cgaacccggc aacgtcggca catccttcaa
      181 ctcctctggc gagagatcgt agatgtcctt ctcgagcggg tcgccgggat cgatccggtt
      241 ctgcacgccg tcgagccccg ccagcatcat cgccgcaaac gcgaggtacg cattgcacga
      301 cggatcgggc ggacgaaact ccaaccgctt caatttcggg ttcgacgaga acatcggaat
      361 acgaatcgca gccgaacgat tacgcgccga gtacgcaaga tttaccggcg cttcaaaacc
      421 cggcacgagc cgtttgtagc tattggttgt cggcgcagca aaagccacga tcgccgccgc
      481 gtgcttcaac aaaccaccga tgtagaaccg cgccatctcc gacagtcccg cataaccatc
      541 accggcgaac agcggcttct cacccttcca tagcgactga tgcacgtgca tgcccgaacc
      601 gttatcacca aacagcggct tcggcatgaa cgtcgccgac ttcccatact cgtgtgcagt
      661 attgcgaact acgtatttga atatttgcag attatcggcg gtgcctaaca gcgtcgaata
      721 acgaaagtcg atttcgcact ggcccgcggt cgcgacttca tggtgatgac actcaacatg
      781 aaccccacac ttctccaacg tcagcgagat ctccgaacgc agatcggcca gtgaatcgac
      841 cggcggaaca ggcacgtaac cttccttcgg acgaatgcga taaccaagat tcgatccggc
      901 aaactcgttt gcgtcgcggc cgctgttcca gtgaccttca tcggagtcga tcgcgtaacc
      961 cgcagagtgt tgctcgttgt gaaacttgac ggaatcaaac acgaaaaact ctgcttcggg
     1021 accgaagaaa gccgtgtctg cgagaccggt gaacttcaga taactttccg cgcgttgcgc
     1081 aactgagcgc ggatcgaacg cgtatccttc tttcgttatc ggatcgacgg cgctgccgat
     1141 caaacagagc gtcggctgtt ccgaaaacgg atccatccag tagcgagtgg cgtcggggac
     1201 gagcagcatg tctgactcgt gaatcgccgc ccagccgcgg attgaagaag cgtcgaaacc
     1261 gaatccatct tcgaactgct cttcgccgag ttcgctgatg ggaaacgtca ggtgttgcca
     1321 ggagccgggt aaatcggtga aacgaacaga gacgaattta gcgccctgat cggtagcgta
     1381 tttcaagaca gtcttagggt tcatgtgatc tcctgaaggt tttataggga gtgttggggg
     1441 tacccttcgc cccggcgcga aatttgtggc gaagtatgtg ggaagctgcg tcgactatcg
     1501 taaaccgagc gtgcgtcata aaccgacggc gcgatgtaaa aaacagcgat tataaacagg
     1561 gagaattctg tgtcaagggt aaattcgcct cgcagcgagg tcacaaaagg tcaacatttt
     1621 ggaaaagcta tagaccgcac cggccctttt ctgttacatt gcggccctaa agcgttccac
     1681 ccaaacacaa actccgcaac tcgattcgga taatgcgcat cagtgtttct gacgtaattc
     1741 ttaacattca agtcttagtt cgaaggcagg agatcgctta attgaccacg gcaatcgagc
     1801 aaacgctcga aacttatgga atcgaaaact ggggtgctgg atactttgat gtaaaccgga
     1861 agggaaacct tatcgtccga cccgtcgaag gcgaccctcg ctcggccgac cttaaagaaa
     1921 ttatcgacga ccttgccaag cgcggaatca ccgcgcccgt gctgctgcgt ttccctcaac
     1981 tcgtggcggc ccaggtaaga aaacttcagc gcgcattcag ccgctcgatt cgcgagtttg
     2041 agtaccaggg cacgcacatg tgtgtctacc cgatgaaggt caaccagcaa cgctcggtcg
     2101 tcgaggaata cctgcgcgaa ggctcgcgct acgacttcgg actggaagcc ggttcgaaag
     2161 ccgaactcta tgccgcgctg gcgctcgaac agcccagcga cagcctgctg gtcctgaacg
     2221 gtttcaagga tcaggaattt atcgagctcg ccttcgcggg tgcgaaagtc ggaaagcgag
     2281 tcgtcatcgt gatcgagaag ttgaacgagc tcgatcacgt gctcaccgtc gccgaacgtg
     2341 aagacggacc actgccgatg atcggcatgc gcgtcaagct ctactcgaaa ggctccggac
     2401 gctgggaaaa gtccggtggc gaggccgcca agtttggttt gactacaact gagttgctgg
     2461 aagtgattcg ccggctcgaa gaagcagatc gcatggacat gcttaagctg cttcacttcc
     2521 acatcggttc gcagctcacc gacatcaagc gcatcaagaa tgcgatgaag gaagccgctc
     2581 gcgtctacgc gaaggtctac cagatgaagg tgccgatcga ttttctcgac gtcggcggcg
     2641 gcatggcagt cgattacgac ggttcgaaaa ccgcgttcga ttcgtcggca aattacaccg
     2701 cgcaagagtt tgccaacgac gttatctaca ccatcaagca ggtttgtgac gacgagaatg
     2761 tgccgcaccc gacgatcatt caggagtcgg gacgttttct ggctgcgtat cacgcgattc
     2821 tcgtaacgaa cgtcctcgac gagattgaaa ccgtcgtcga agacatcacg ccgatcgaga
     2881 ttggcgaaga cgatccgcag gtcgtgatcg aactcggcga cctgcgcgag tcgatcagtg
     2941 tcaagaatta tcgcgagtat taccacgacg cgctcgaaca tcgtgaagag ttgtttacgt
     3001 tgttcaatct cggattgatt tctctggaag atcgcgcgaa gggcgaagtg cttttctggg
     3061 acgtttgcga acgcgcggac aagtatgcgc agcaggcgaa gtacgtttcg gaagagtttg
     3121 gcgaacttcg ccgcctgctt tccgtgaaat atctgacgaa cttttccgtg tttcgttcgg
     3181 tgcctgatca ctgggcgctt
//
LOCUS       DASWTX010000230         2135 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_219313, whole genome shotgun sequence.
ACCESSION   DASWTX010000230 DASWTX010000000
VERSION     DASWTX010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2135
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219313"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..617)
                     /locus_tag="VGD38_03550"
     CDS             complement(<1..617)
                     /locus_tag="VGD38_03550"
                     /inference="COORDINATES: protein motif:HMM:NF012585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HEY0727118.1"
                     /translation="MKNDKRPANLKAMRIGVLTGGGDAPGLNPAIKGLVYRGSELGLQ
                     VIGLLDGWRSLLNPPPEVLPLDRETVRRWDRDGGTNLGSSRTNPFKQLNDEGEAHDRS
                     DEVVENIQRLQLDALVVCGGEDTMGVGAKLAQRGVKVVGVPKTIDKDLAGTDYTLGFD
                     TALRNVSEVIERSRTPAGSHGWVQIVEVMGRHAGHLALWSGVAGQS"
     gene            640..1170
                     /locus_tag="VGD38_03555"
     CDS             640..1170
                     /locus_tag="VGD38_03555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727119.1"
                     /translation="MKPQQKQPQQKIFITLLALFVCASFALPAAAQNSTAVLAGAELT
                     RIVPTSFYFQGQSAPTQMRNSAAARFSKNHHVIAGMVDTSGYSAEIRARYQGFFITDS
                     SITIGGETLPTGAYGFGFTNDGKMNVLDLANNQVLSVSTTNDKALRRPRPLMMTMDGS
                     NVRLYVGRDYVVIAAK"
     gene            1176..>2135
                     /locus_tag="VGD38_03560"
     CDS             1176..>2135
                     /locus_tag="VGD38_03560"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HEY0727120.1"
                     /translation="MRSLFTKRLLFGLVTVLLSFSLLTAQTPPKTQQPMGGASTGAPA
                     TYTSRRTTGITDANAPVVFEDVTGKTALANFRHRSGGTAKDYILDTPSGGVAIFDYDN
                     DGRPDVYLLNGSTIPAMQGKEKAPRAALYRNLGNWKFEDVTDKAGVANERWGFGVAVG
                     DYDNDGYADMYVGNFGVSRLYHNNGNGTFTDVAEKLNVARRGWSTGASWGDYDQDGRL
                     DLFVPGYVQIDLNNLPPSPSATGAATQNFCQFRGVPVMCGPRGLTGDGDTLYHQKADG
                     TFEDVSVKAGVTDPEKYYGFSSVFVHIDDDKLLDLLVVNDSTPN"
BASE COUNT          451 a          646 c          600 g          438 t
ORIGIN      
        1 gactgacccg ccacacccga ccacagcgcg agatgtccgg cgtgccgtcc catcacctcg
       61 acgatctgca cccatccgtg cgatccggcc ggcgtgcgcg aacgttcgat cacttctgaa
      121 acgttgcgca gcgctgtgtc aaaaccgagc gtgtaatccg tgccggcaag atccttgtcg
      181 atcgttttcg gcacgccgac gaccttgact ccgcgttgcg ccaacttcgc gcccacgccc
      241 atcgtgtctt cgccgccgca aacgacgagc gcgtcgagct gaagacgctg gatgttctcg
      301 acgacttcgt ccgatcgatc gtgtgcttcg ccttcgtcgt tcaactgctt gaacggattc
      361 gttcgcgacg atccgagatt ggtgccgccg tcgcgatccc agcgccgcac ggtctcgcga
      421 tcgagtggca gcacttcagg cggcggattc agcaaactgc gccaaccgtc gagaagacca
      481 ataacttgta agccgagttc tgagccgcga tagaccagac ctttaattgc aggattcaaa
      541 ccgggagcat caccgcctcc cgtcaggacg ccaatacgca tggctttcaa attagcaggc
      601 cgcttgtcgt tcttcaacag gagcggtatt gtgtgcgcca tgaagcccca acaaaagcag
      661 ccccaacaaa aaatatttat caccttatta gcgctgtttg tctgcgcatc gtttgcactt
      721 ccggcagcgg ctcagaacag caccgccgta ttagccggcg cggaactgac gcgcatcgtt
      781 cccacgtcgt tttactttca gggacagagc gcgccgacgc agatgcgcaa ctcggcagcc
      841 gcgcgtttca gcaagaatca tcacgtgatt gccggcatgg tcgacacgtc cggttactcc
      901 gccgagatca gggcgcgtta tcagggtttc ttcatcactg actcgagcat caccatcggc
      961 ggcgagacgt tgccgaccgg cgcttatggt tttggattca cgaacgacgg gaagatgaac
     1021 gttctcgatc tcgccaacaa ccaggtactt tcagtttcaa ccacgaacga taaagcgttg
     1081 cgacggccgc ggccattgat gatgacgatg gacggatcga acgtgcgtct ttacgtcgga
     1141 cgcgactacg tcgtaatcgc cgcgaagtga tcagtgtgag aagtttgttc acgaagcgcc
     1201 tgttgtttgg cctcgtcacg gtcttactct ctttttcgct actgacggcg caaacgccgc
     1261 ctaaaactca gcagccgatg ggtggcgcgt cgaccggcgc gcccgcaacc tacacctcac
     1321 gcagaacaac cggcatcacc gacgcaaatg cgcccgttgt ttttgaagac gtaaccggca
     1381 aaaccgcgct ggcgaacttt cgtcatcgct cgggaggcac ggcgaaggac tacatcctcg
     1441 acacaccttc cggcggcgtc gcgatcttcg attacgacaa cgacggccgt cccgatgttt
     1501 atctgctgaa cggctcgacg atccccgcga tgcagggcaa ggagaaagcg ccgcgcgccg
     1561 cgctgtatcg caatctcggt aattggaaat tcgaagacgt gacagacaag gcgggcgtcg
     1621 ccaacgagcg ttggggcttc ggcgtcgcgg ttggtgatta cgacaacgac ggttacgcgg
     1681 acatgtacgt cggcaacttt ggcgtctcgc gtctttatca caacaacggc aacggcacgt
     1741 ttaccgacgt tgcggaaaaa ctgaacgtcg cacgccgcgg ctggagcacg ggcgcgagtt
     1801 ggggcgatta cgatcaggat gggcgcctcg atttgtttgt acccggatat gtgcagatcg
     1861 atctcaacaa cctgccgcca agtccttctg cgactggcgc cgctacgcaa aacttctgcc
     1921 agtttcgcgg cgtgcccgtg atgtgtgggc cacgcggtct gacgggcgat ggcgacacgc
     1981 tgtatcacca gaaagctgac ggcacttttg aagacgtgag tgtgaaagcg ggcgtgactg
     2041 atccggaaaa gtattacggc ttctcgtcag tgttcgtaca catcgacgac gacaagctgc
     2101 tcgatctgct cgtcgttaac gactcgacgc cgaat
//
LOCUS       DASWTX010000231         3395 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_47338, whole genome shotgun sequence.
ACCESSION   DASWTX010000231 DASWTX010000000
VERSION     DASWTX010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3395
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47338"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3359
                     /locus_tag="VGD38_03565"
     CDS             <1..3359
                     /locus_tag="VGD38_03565"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEY0727121.1"
                     /translation="RTIENLANRFVNALRTIIAECRKPAATIEDRYPLSPLQQGMLFH
                     SVYAPDSSIYIGQLSFALEGDLDVDAFAAVWQRAVARHAILRTSFAWENLNEPLQTVH
                     ERIELPIETLDWRKLPPLEQQNRLDALLEDERRRGFDLTVAPLMRLKLVQLGDESYRF
                     VWTHHHLLLDGWSIALLLKEVFSDCEFLRRGLDREPPATRAYRDYIAWLGQQDVSRTR
                     SFWTTYLDGFLAPTPLGVDHAPADPARKADIGRLRVRLSQTESDRIRALARQNRLTVS
                     TLFQGAWARLLSFYSRESDIVYGTTVAGRPAGFAGVESMVGLFINTLPVRVRFRPEIS
                     VRAWLKEIQAEQVISREYENSPLVELQALSAVPRGAPLFESLLVFENYPLDVQVLGSG
                     EDLKASDVWWFDQTNYPLTLVVTPGEELSFEIFYDKHRFAPDVVQRMLGHLQTILDAF
                     ASEPSQRLGQVSIVTADERSRLLSEWNDTLKQSASLGRHVHELFAEQARKEPERIAVA
                     CGAEQLTYGELNARANRLARYLRRLGVETESRVCICLEPGPELIVAVLGVLKAGAAYV
                     PLDPAYPDNRLAFMLNDCGARVLLTESRLLDGRLEPGNVRAVCVDAERDEIMRESTDD
                     PEVNISGDNLIYVIYTSGSTGRPKGAGVTHSNFINLVDWFVSEFELTQRERVLIISSF
                     SFDLTQKDIFATLATGGRLHFPVSTLYDPAEILATISEQEITFVNCTPSAFYPLVDAA
                     KPGFQKLATLRHVFLGGEPINVLRLREWAAYRNAEIVNTYGPTEATDTCSAFRLSDLE
                     PRTSAPPIGKPSDNAELLILDEHLNLVPQGVGGELCIGGAGVGRGYLNNPAATAERFV
                     PHPYSSAAGARLYRTGDLVRHLPDGNIEFLGRLDHQVKVAGYRIELGEVEAAMVQHEA
                     VSECVVVVRDDAHGNARLVAYIVPEQEAQMPDASTLRRYLADSLPAHMIPSVFVSLEK
                     LPLTPGGKVDRRALPAPNAMGNGTGSEYVSPRTAVEEVLAGIWREVLGVERVGIHDNF
                     LDLGGHSMLAMRCVSAMRRLFRIDIPLRVLFETADLEELAHTLKAHEDHPGALEKRAR
                     VLQKVKAIPREELQNELLKRRASKSVVVGE"
BASE COUNT          663 a          949 c         1059 g          724 t
ORIGIN      
        1 aacgcacgat cgagaatctc gcgaaccgct ttgtgaacgc attacgcaca atcatcgctg
       61 aatgccgtaa accagccgcc acgattgaag atcgctaccc gctgtcgccg ctgcagcaag
      121 gcatgctctt tcacagcgtg tacgcgcccg actcgtccat ctacatcggg caattgagct
      181 tcgcgctcga gggtgatcta gacgtggacg cttttgccgc agtgtggcag cgagcggtcg
      241 cgcggcatgc gatcttgcgc acctcattcg cctgggaaaa tctcaacgaa ccgctgcaga
      301 cagtacacga gcgaatcgag ttgccgattg aaacactcga ctggcgcaag cttccgccgc
      361 ttgaacagca gaaccgcctc gacgccctgt tagaagacga acggcgccgc ggattcgatc
      421 tgactgtcgc tccattgatg cgtctgaagc tggtgcagct tggagacgaa tcgtaccggt
      481 tcgtctggac tcaccatcac ctgcttttgg acggatggtc catcgcgctg ttgctcaagg
      541 aagtgttttc cgactgcgaa ttcttgcgcc gcggtctcga cagagaaccg ccggcgactc
      601 gcgcgtaccg cgactacatc gcgtggctgg ggcagcaaga cgtctcgcgc acgcgatcgt
      661 tttggacgac ctatctcgac ggttttctcg cgcccacgcc actcggcgtg gaccacgcgc
      721 cggcggatcc cgcgcgcaaa gccgacatcg ggcgtttgcg tgtacgtctt tcgcaaaccg
      781 agagcgatcg catacgcgca ttggcgcggc agaaccggtt gacggtgagc acgttgtttc
      841 aaggcgcgtg ggcgcggctg ctgagtttct atagccgcga aagcgatatc gtttacggta
      901 cgactgtcgc cggacgtccc gccggtttcg ccggtgttga gtcgatggtc ggtctgttta
      961 tcaacacgct tccggtgcgt gttcgcttcc ggcccgagat atcggtacgt gcgtggctga
     1021 aagagattca agcggaacag gtcatctcgc gcgaatacga aaatagcccg ctggttgagt
     1081 tgcaagcgtt gagtgcggtg ccgcgcggcg cgccgttatt tgagagtctg ctcgtgtttg
     1141 agaactaccc gttggatgtt caggtgcttg gcagtggtga ggatctgaaa gcgagtgacg
     1201 tgtggtggtt cgatcagacc aattatccgt tgacgcttgt cgtcacgccg ggcgaggagc
     1261 tgtcgttcga gatcttttat gacaagcatc gtttcgcgcc cgacgtggtc caacggatgc
     1321 tcggccatct tcagaccatc cttgacgcgt tcgccagcga accttctcag cgcttgggcc
     1381 aagtgtcgat cgtcactgcg gacgagcggt cgcggttgtt atcagaatgg aacgacacgc
     1441 tcaaacagag cgcctcgctg ggtcggcacg ttcacgaact cttcgcggaa caggcgcgga
     1501 aagaaccaga gcgaatcgcg gtcgcgtgtg gcgcggagca attaacgtac ggcgagttga
     1561 atgcgcgtgc gaaccgtttg gcgcgatacc tgaggcgcct cggcgtcgaa acggaatcgc
     1621 gcgtctgtat ctgtctcgag cctggacccg agctgatcgt cgcggtgctt ggtgtgttga
     1681 aagcgggtgc ggcgtacgtg ccgctcgatc ccgcatatcc cgataaccgg ttggcgttca
     1741 tgctcaacga ttgcggggct cgagtgttgt tgactgagag tcgcttactc gatggccgtt
     1801 tggagcccgg gaatgtgcgc gcggtatgtg ttgatgctga acgtgacgaa atcatgcgcg
     1861 agtcgacgga tgatccggag gtgaacatct ccggcgacaa cctgatttac gtcatctaca
     1921 cgtcaggctc gaccggccgt ccgaaaggcg cgggagtcac gcacagcaac ttcatcaacc
     1981 tcgtcgattg gtttgtctcc gagtttgaac taacccaacg cgagcgcgtc ttaattatct
     2041 cgtcgttcag cttcgacctg acgcagaaag acatcttcgc gactctcgcg acaggcggac
     2101 gattacactt tcccgtttcg actctttacg acccggcgga aattctcgcg accatttccg
     2161 aacaagagat cacgttcgtt aactgcacgc cgagcgcttt ttatccgctg gtcgacgccg
     2221 ctaaacccgg gtttcaaaag ctggcgacgc tgagacacgt gtttctcggc ggcgagccga
     2281 tcaacgtgtt gcgtttgcgt gagtgggccg cgtaccgcaa tgccgagatc gtaaacacgt
     2341 atggaccaac tgaggcgacg gacacgtgtt ccgcgtttcg cttgagcgat ttggagccac
     2401 ggacaagcgc gccgccgatc ggaaagccaa gcgacaacgc tgagcttttg attctcgacg
     2461 agcacttgaa tctggttcca cagggtgttg gcggagagtt gtgtattggc ggcgccggtg
     2521 ttggccgagg ctacctgaac aatcctgccg cgactgcgga gcgctttgtt cctcatcctt
     2581 acagctccgc ggcaggcgca cggctctatc gcacaggcga cttagtgcgg cacttgccgg
     2641 acgggaatat tgagttcctc gggcgtctcg atcaccaggt caaggtggcg gggtatcgga
     2701 ttgagttggg tgaagtggaa gcggcgatgg tccaacatga agcggtgagt gagtgtgtcg
     2761 tcgtcgtgcg ggacgatgcg cacggcaatg cgcgactggt tgcttacatc gtgccggaac
     2821 aagaggcgca aatgccggac gcgtcgacgc tgcggcgtta tctcgcggac agtttgcctg
     2881 cgcacatgat cccgtcagtg ttcgtgtcgc ttgaaaaact tccactaaca ccgggcggaa
     2941 aagtggatcg ccgcgcgttg cccgcgccca acgcgatggg caacggaacc ggctctgaat
     3001 acgtgtcgcc gcgcacggct gtggaggaag ttttggcggg gatttggcgt gaagttctcg
     3061 gggtcgaacg cgtggggatt cacgacaatt tcctcgacct cggcggccac tcgatgctgg
     3121 cgatgcgttg cgtctccgcc atgcgccgcc tgttccgcat cgacattccg ctacgcgttc
     3181 ttttcgaaac agcggatctc gaagagttgg cccacacatt gaaggcccac gaagaccacc
     3241 ccggcgccct cgagaagcgc gcgcgcgtgt tgcaaaaggt caaggccatt ccgcgtgaag
     3301 agttgcagaa cgagttattg aaacgacgcg cgagcaagtc ggtggtagta ggcgagtaag
     3361 gcaacggtag cggatgagta agttgatggc gggcg
//
LOCUS       DASWTX010000232         2887 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_414409, whole genome shotgun sequence.
ACCESSION   DASWTX010000232 DASWTX010000000
VERSION     DASWTX010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2887
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_414409"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..714
                     /locus_tag="VGD38_03570"
     CDS             <1..714
                     /locus_tag="VGD38_03570"
                     /inference="COORDINATES: protein motif:HMM:NF012373.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="complex I subunit 1 family protein"
                     /protein_id="HEY0727122.1"
                     /translation="VITHFDIGLLYVLGITSVGVYGIALAGWSSNNKYSLMGALRASA
                     QMISYELALGLSLIGVILLAGTLDLAQIVELQSGWHGFRWFIFFHPLGVIIYMIAAIA
                     ETNRVPFDLPEAETELVAGFHTEYSAMKFALFFLAEYINMFTVSMLATTLFLGGWNVP
                     FAEDIFGRGTFLFGLVSAIGFLLKVIFFLFLYIWLRGTLPRFRFDQLMNFGWKILLPF
                     ALLSIFITATLIFLFPNLF"
     gene            718..1251
                     /locus_tag="VGD38_03575"
     CDS             718..1251
                     /locus_tag="VGD38_03575"
                     /inference="COORDINATES: protein motif:HMM:NF012709.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HEY0727123.1"
                     /translation="MLVLLFILFGAMAIGCALAVVAQRNPLYSAISLIGVFISLACLY
                     VMLAAPFIAAVQVIVYAGAIMVLVVFVIMLLNVEEEEHRRPRLRFLVPAAVVLAGVMI
                     AEVAFILVSVQQSPAVPGSSTSDVGLTQSIGSALFTRYLLPFEITSILLLMAIVGAMT
                     LARRGGLLQSRDRAKRD"
     gene            1257..1562
                     /gene="nuoK"
                     /locus_tag="VGD38_03580"
     CDS             1257..1562
                     /gene="nuoK"
                     /locus_tag="VGD38_03580"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002638444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HEY0727124.1"
                     /translation="MEPQLSWYLALSAVLFTIGMAGVIIKRNVIAMFMCIELMLNAVN
                     LTFVAFASFFHDVTGQLFVFIVMTVAAAEAAVGLGIIIAIFRNRETLDVDEASILKL"
     gene            1570..>2887
                     /gene="nuoL"
                     /locus_tag="VGD38_03585"
     CDS             1570..>2887
                     /gene="nuoL"
                     /locus_tag="VGD38_03585"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEY0727125.1"
                     /translation="METNLLSIIIFAPLAGAAINWLLGRRVRSERFIGVVACGSVAIS
                     TLVAFYLAFNSHGALRTEEPLLDHIWTWLHVGNFRADFALAMDRLSGTYALFITFVGF
                     LIHVFAVGYMHGEAGFYRFFSYLNLFMFAMLTLVLADNFVLMFVGWEGVGLCSYLLIG
                     YYTNRKEAGDAAKKAFITNRIGDWGFVLGIMLTFFITGSVSFFANPAAGEATQTALSY
                     FKTASVDPFTLGAIFAGGATSVAVLLFIGAAGKSAQIPLYVWLPDAMAGPTPVSALIH
                     AATMVTAGVYMIVRCSEIFVHAPTAMFIVAIIGAATALFAATIGLAQNDIKKVLAYST
                     ISQLGYMFLACGVGAFIAAIFHVITHAFFKALLFLGSGSVIHGMHHEQDMRRMGGLKK
                     YMPITFATMVTGWLAISGFPFFAGFFSKDEILWKTWSAPAFSLPSTG"
BASE COUNT          450 a          795 c          873 g          769 t
ORIGIN      
        1 gtgatcacgc attttgacat cggcctgctt tacgtgctgg gaatcacttc ggtcggcgtt
       61 tacggcatcg cgctcgcggg ttggtcgtcg aacaacaagt acagcttgat gggcgcgttg
      121 cgcgcttcgg cgcagatgat ctcttacgag ctcgcgctcg gcttgagtct gatcggcgtg
      181 atcctgctcg cgggcacgct cgacctcgcg cagatcgtgg aactgcaatc cggctggcac
      241 ggtttccgct ggttcatctt ctttcatccg ctcggtgtca tcatttatat gatcgcggca
      301 attgcggaaa cgaaccgcgt tccgttcgat ctgccggaag ctgagactga gctcgtcgcg
      361 ggttttcaca ccgagtacag cgcgatgaag tttgcgctgt tcttcctggc cgagtacatc
      421 aacatgttca cggtgtcgat gctggcgacg acgctgtttc tcggcggctg gaatgtgccg
      481 tttgcggaag acatctttgg gcgcggaacg tttttgttcg gcctcgtcag cgcgatcggc
      541 tttctgttga aagtcatctt ctttctgttt ctttacatct ggctgcgcgg aacgttgccg
      601 cgctttcgtt tcgatcagtt gatgaacttc ggctggaaga tcctgctgcc gtttgcgctg
      661 ttgagcattt tcatcaccgc gacgctgatc ttcctgttcc cgaacctgtt ctgagcgatg
      721 ctggttcttc tattcatact ttttggcgca atggcgattg gctgcgcgct cgccgtggtc
      781 gcgcaacgca atccactcta cagcgcgatc tcgctgatcg gcgtgtttat ctcgctggcg
      841 tgtttgtacg tgatgctggc ggcgccgttt atcgcggccg tgcaggtgat cgtttacgcg
      901 ggcgcgatca tggtgctcgt cgtctttgtg atcatgctgc tcaacgtcga ggaggaagaa
      961 caccggcgtc cgcggctcag gtttttagtg ccggcggcag tggtgttggc gggcgtgatg
     1021 atcgcggagg tcgctttcat tctcgtgtcg gtgcagcagt cacccgcggt tccgggttcg
     1081 agcacgtctg atgtcggact gacgcagtcg atcggttcgg cgttgttcac gcgttacctg
     1141 ctgccgtttg agatcacttc gattctgttg ctgatggcca ttgtcggcgc gatgacgctg
     1201 gcgcgacgcg gtggactact tcagtcacgc gatcgggcta agagagacta agaccgatgg
     1261 aaccacaact ctcctggtat ctcgcgctgt ctgccgtgct tttcacgatc ggcatggcgg
     1321 gcgtgatcat caagcgaaac gtcatcgcta tgttcatgtg catcgagttg atgctcaacg
     1381 ccgtgaacct gacgtttgtt gcttttgcga gtttctttca cgacgttacg ggtcagttgt
     1441 ttgtgttcat cgtgatgacg gtggcggctg ctgaggcggc ggttggtttg ggaatcatca
     1501 tcgcgatctt tcgcaatcgc gagacgctgg acgtcgacga agcgagcatt ttgaaactgt
     1561 agcggcttaa tggaaacgaa tctcctcagc ataattatct ttgccccgct cgcgggcgcc
     1621 gcgatcaatt ggctcctcgg gcggcgagtg cgcagtgagc ggtttattgg tgtggtggcc
     1681 tgtggttcgg tggcgatctc cacactcgtt gctttctatc tcgcgttcaa ttcgcacggc
     1741 gcgctgcgca cggaagagcc gttgctcgat cacatttgga cgtggctgca cgtcggtaat
     1801 ttccgcgcag acttcgcgct cgcgatggat cgtctcagcg gcacttacgc gctcttcatc
     1861 acgttcgtgg ggtttctgat tcacgtcttt gccgtcggct acatgcacgg cgaggctggc
     1921 ttctatcgct tcttctcgta cctgaacctc ttcatgttcg cgatgctcac gctcgtgctc
     1981 gcggacaact tcgtgctgat gtttgtcggc tgggaaggcg tcgggctttg ctcgtacctg
     2041 ttgattggtt actacaccaa ccgcaaggaa gcgggcgacg ccgcgaagaa agcgttcatc
     2101 acgaaccgta tcggcgactg gggcttcgtg ctgggcatca tgctgacgtt cttcattacg
     2161 ggttcggtca gcttctttgc taacccggcg gcgggcgaag cgacgcaaac cgcgctttct
     2221 tacttcaaga ctgcatctgt tgacccgttc acgctcggcg cgatcttcgc gggcggcgcg
     2281 acgtcggtgg cggtacttct cttcatcggc gccgcgggaa agagcgcgca gattccgctt
     2341 tacgtttggc tgccggacgc gatggcgggt ccgacgccgg tctcggcgct gattcacgcc
     2401 gcgacgatgg tgacagccgg cgtttacatg atcgtgcgct gttccgagat cttcgtacac
     2461 gcgccgacgg cgatgttcat tgtcgcgatt atcggcgcgg cgactgcgtt gtttgcagcg
     2521 acgatcggcc tcgcgcaaaa cgacatcaag aaggtactgg cttactcgac gatctcgcag
     2581 cttggttaca tgtttctcgc gtgcggcgtc ggcgcgttca tcgctgcgat ctttcacgtc
     2641 atcacgcacg cattcttcaa agcgctgctg ttcctcggtt ccggttcggt gattcacggc
     2701 atgcaccacg agcaggacat gcgccgcatg ggcgggctga agaagtacat gcccattacg
     2761 ttcgccacga tggtcaccgg ctggcttgcg atcagcggtt ttcctttttt tgccggcttc
     2821 ttttcgaagg atgagatcct ctggaagacg tggagtgcgc cggcatttag cttgccctcg
     2881 actgggt
//
LOCUS       DASWTX010000233         3750 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_393536, whole genome shotgun sequence.
ACCESSION   DASWTX010000233 DASWTX010000000
VERSION     DASWTX010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3750
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_393536"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(234..728)
                     /locus_tag="VGD38_03590"
     CDS             complement(234..728)
                     /locus_tag="VGD38_03590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727126.1"
                     /translation="MVLTLVSKTMRLLLAVSVSVWMAGGCLFGCSNNEVLAAEVSQDV
                     STPAVADDNCNRARKHDCCTRPNAQKTKTQKSKKISRRPVQAIDSSALTALPHSMTDC
                     PLMTNATAVTSKSNGSLPDPGNSSVAVLPAIKNTTEQAEFTPVRSYVPNRGPTYLRCC
                     VFLI"
     gene            861..1079
                     /locus_tag="VGD38_03595"
     CDS             861..1079
                     /locus_tag="VGD38_03595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727127.1"
                     /translation="MSIDKNNITTQDELNEPAPMDQADERAKAEMRELERKAKQAVAE
                     GLQQTEEQDETGEEDDEKPAPSMLDRRR"
     gene            complement(1081..1536)
                     /locus_tag="VGD38_03600"
     CDS             complement(1081..1536)
                     /locus_tag="VGD38_03600"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY0727128.1"
                     /translation="MLPAVVLDTEMKSANGDEPIKLSNYSGKVLLVNLWATWCGPCRR
                     ETPELVRLHQEYHDRGLEVVGLSTEDPIASEQTVQEFVRVFNVGYRVGWAPREVAIAL
                     MRGRTSIPQSFIVTRDGRIAKHFLGFHPQNTPPQLKQAVEEALSDTATR"
     gene            complement(1723..2985)
                     /locus_tag="VGD38_03605"
     CDS             complement(1723..2985)
                     /locus_tag="VGD38_03605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727129.1"
                     /translation="MKTCPKCNRTFPDEGQKFCTFDGGLLIAPQTFDPNATMRATSID
                     LNAASERPTSRDLPDPNATIIENYPATVALPRNTGPTGQPTTADTADFGQPAAPPPAP
                     PPAPVPPPVAAAPPPPPAETSGSLASAATGRVAPVSTPTGPVGQQQAASAPLPPAAAK
                     KKSKLPWIIAGVLAFLLLGGGAVAAAFFLVVKPKLDEMAAERNPRIQVEPTPSTATPA
                     PTIEQPSPSPEDTFVPPANATEFTSSNDGLQGPLAEHYFDFSFYYPNSWERIQRAGAQ
                     SFVEVERRIPPDFTQENLVVGWYTSTGTFVGDLPSYPKRVEEFSARLAKQYPEYRKVS
                     EGPTKVNSMDAYEFRWVGHSKGTEKGDLDLWGRVIFVPTGKQGDVTGATLSMVTTSLA
                     PELSSVEDVGTKGEGPMILDSFRFGKKN"
     gene            complement(3046..>3750)
                     /locus_tag="VGD38_03610"
     CDS             complement(3046..>3750)
                     /locus_tag="VGD38_03610"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0727130.1"
                     /translation="RKSVQIDPKNAVGWDRLGVALQARGLANSETEHSYRRAIELDPQ
                     FAVAYAHLARMLNRAGRPGEAAPLYEKATELAKDPATLNLIADSLQAEQLWPQSEPVL
                     KRALELDPRNPTSLMLIGRMLVVYKRYQEAEPYLKAATEVSSRAFQPFNLLGRAYLGM
                     ERFSDAEATYEKASAFVAAGDKKQLAGVFGFEGVGDGYLKLKQKDNAARAYQRALALD
                     PSNSGAAQKLQRARAN"
BASE COUNT          822 a         1113 c         1011 g          804 t
ORIGIN      
        1 gcgccttcct tcttcatcgg gcacgaatgg tctttacagc aacccgattc ggcggctttc
       61 ttctggtcgc tactctgacc agcaggttgt tgggccatga cggcgacgaa agcggtcaaa
      121 agcagggcga cgagggtaat cagaatagtg ctcttatgag gtctcattgt agttctcctt
      181 agggttgaga gattaatatc gatgaattaa ctggcgttga ggcagatctc tctctagatc
      241 aggaaaacac aacagcgaag gtaggtaggg ccacggtttg gtacgtaaga ccgtacgggt
      301 gtgaattcag cctgttccgt cgtgttcttg atcgccggca gcacagctac ggaagaatta
      361 ccgggatccg gaagactgcc gttactcttc gacgtcaccg cggtggcgtt cgtcatgagc
      421 gggcaatccg tcatgctatg cggcagcgcg gtcagcgcgg aactatctat cgcctgaacc
      481 ggccggcgcg aaatcttttt cgatttttgt gtttttgttt tttgagcgtt tggacgtgtg
      541 cagcaatcgt gcttgcgcgc cctgttacag ttatcgtcgg caacggcggg agtggaaacg
      601 tcctgcgaaa cttccgccgc cagtacctca ttattgctgc aaccaaacaa acaaccaccc
      661 gccatccaca cagacacact gaccgccaac agcagtcgca tagtcttgct gacgagtgtt
      721 aaaaccatca gccgcagtct actcccgttc ccgccggttt gtcgagaaaa cagggccacg
      781 atcgaaaaac acaaaagcac aaaaacgccg caagttttat gtaaccggtg gcttgttagc
      841 ctagttgccg gagaacagaa atgagtatcg acaaaaacaa cattacaacc caggatgaac
      901 tgaacgaacc ggccccgatg gaccaggccg acgagcgcgc caaggcggag atgagagaac
      961 tggaacgtaa ggcgaagcaa gctgtcgccg agggattaca gcagactgaa gaacaggacg
     1021 aaaccggcga agaggatgat gagaaacccg cgccgtcaat gttggatcgc cggcgttgag
     1081 ttaacgcgtg gccgtgtccg aaagtgcttc ttcgaccgcc tgcttgagtt gcggcggtgt
     1141 gttctgtggg tgaaaaccaa gaaagtgttt ggcaatgcgc ccatcgcgcg tgacgataaa
     1201 gctctgcgga atcgacgtcc gcccacgcat cagcgcaatc gcgacttcac gcggcgccca
     1261 gccgactcga taaccgacgt tgaagacacg cacaaattcc tgcacggtct gctctgaagc
     1321 aatcggatct tcggtcgaaa gcccgaccac ttccaaaccg cgatcgtgat actcctggtg
     1381 caacctgacg agctccggag tttctctccg gcacggtcca caccacgtcg cccaaagatt
     1441 aaccagcaaa acctttcccg agtagtttga gagtttgatc ggctcgtcgc cgtttgcgct
     1501 cttcatctcg gtgtcgagca caaccgcagg caacatcgtt gccgctgcat ttccgctcga
     1561 aggagcgctt ggcctggaac tccggggctc agggtcgttt gaaatacaac acgccacgcc
     1621 aaacgccgcc agcattccca gcacgatcag cgtggacaca atccgcagag gcgtccaaaa
     1681 ctttatcgcc cctgtttcct gcttctttaa tgccatgagg atttaattct tctttccgaa
     1741 cctgaacgaa tcgagaatca tcggcccctc gccctttgta cccacatctt ccacagatga
     1801 cagttccggc gcaagggatg tcgtgaccat actcaaagtt gcgccggtca catcgccttg
     1861 ttttccagtc ggcacaaaga taacgcgtcc ccacaaatcc agatcgcctt tttccgttcc
     1921 ctttgaatga cccacccacc tgaactcgta ggcgtccatg gaattaactt tggtcgggcc
     1981 ttcagaaacc ttgcggtatt cagggtactg cttcgccaac ctcgcgctga actcctcgac
     2041 gcgtttggga tagctcggca ggtcgccgac aaacgttccc gtactcgtat accagccaac
     2101 cacaagattc tcctgcgtga agtccggcgg tattctgcgc tcgacttcaa caaagctttg
     2161 cgcgcccgct ctttgaatgc gttcccagga gttgggatag taaaaactga aatcgaaata
     2221 gtgttccgca agcggcccct ggagaccatc gttggaactc gtgaactccg tcgcattggc
     2281 tggcggcaca aacgtgtcct ccggcgacgg cgaaggttgt tcgatcgtcg gtgctggagt
     2341 cgcagtgctc ggtgtcggtt cgacttgtat ccgcggattg cgctccgcgg ccatctcgtc
     2401 caacttcggt ttcacgacga ggaaaaacgc agccgcaact gcgccgccgc caagtaacag
     2461 aaacgccagt acgccggcga tgatccacgg caacttcgac ttcttctttg ccgcggccgg
     2521 cggcaaaggc gctgaagcag cttgttgttg gcccaccggt cctgttggtg tagagacagg
     2581 cgcaacacga ccagtcgcag cgctagccaa cgatccactc gtctctgccg gaggcggtgg
     2641 tggcgcagcc gcaacgggtg gcggcactgg agccggaggc ggagccggcg gcggcgctgc
     2701 cggttgaccg aagtccgccg tatcggccgt ggttggctgt cccgttggtc cagtgttgcg
     2761 cggcagcgcg accgttgccg gataattctc aataatcgtc gcgttcggat cgggcaggtc
     2821 gcggctcgtc ggtctctccg acgccgcatt caaatcgatc gacgtagcgc gcatcgtcgc
     2881 attcggatcg aaggtttgcg gagctatcaa cagcccgccg tcaaacgtgc agaacttctg
     2941 accttcatcc ggaaaagtac gattacactt ggggcaagtc ttcatttggg cggaacctca
     3001 agacgacaat cagatttgat ttctactctc aaccagcact ttcgatcaat tcgcgcgcgc
     3061 gcgctgtaac ttctgcgccg cgccgctgtt gctcggatcg agcgccaacg cacgttgata
     3121 agcgcgcgcg gcgttgtcct tctgcttcag cttcagataa ccatctccga cgccttcaaa
     3181 gccaaacact ccggcaagtt gcttcttatc gccggcggct acaaaagccg acgccttttc
     3241 gtaagtcgct tccgcgtcgc taaaccgttc catgccgaga taagcacggc cgagtaaatt
     3301 aaacggctga aacgcacgcg agctcacttc cgtcgcggcc tttaaataag gctcggcttc
     3361 ctggtaacgc ttgtaaacca cgagcatccg gccaatcagc atcagcgacg tcgggttacg
     3421 cggatcgagt tccagcgctc gcttcaggac cggttccgat tgcggccaca actgttcggc
     3481 ctgcagcgaa tcggcaatca ggttcaacgt cgccggatct ttcgcgagct cggtcgcttt
     3541 ttcatacaac ggcgccgctt caccaggacg tcccgcacga ttcagcattc gcgcgaggtg
     3601 cgcatacgca actgcaaact gcggatcgag ttcgatcgcg cgccggtagg aatgctcggt
     3661 ctcactgttt gccaaaccac gtgcttgcag cgccacgccc aaacggtccc aaccaactgc
     3721 gttcttcgga tcgatctgca ccgacttgcg
//
LOCUS       DASWTX010000234         3197 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_284988, whole genome shotgun sequence.
ACCESSION   DASWTX010000234 DASWTX010000000
VERSION     DASWTX010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3197
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284988"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..599)
                     /gene="panB"
                     /locus_tag="VGD38_03615"
     CDS             complement(<1..599)
                     /gene="panB"
                     /locus_tag="VGD38_03615"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: protein motif:HMM:NF014593.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEY0727131.1"
                     /translation="MPYLKPERPEKVSAPSLKSSKQRGERLVCLTAYDYPTARLVDEA
                     GIDVILVGDSLGNVVLGYGNTVPVTLDEILIHLKAVRRAVQRALLVADMPYGTFHTGD
                     DDAVRNALRLVKEGGAEAIKLEGGHKRVQLVKRLVDEEISVMGHIGLTPQSIKQLGAY
                     RVQGKTAQAAQPLLDDAKALEDAGAFAVVLEVVPREIAKL"
     gene            complement(652..1137)
                     /gene="folK"
                     /locus_tag="VGD38_03620"
     CDS             complement(652..1137)
                     /gene="folK"
                     /locus_tag="VGD38_03620"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEY0727132.1"
                     /translation="MIQNAYVGLGSNLGDRAGYLLLAVRGMLDAGLDVSRLSNIYETA
                     PVDNVDQPAFLNMVAELRGPSLPASVQLLACLLRIEYSLGRTRDVLNGPRTIDLDLLI
                     FKEERLNTEFLTLPHPRLHLRRFVLVPLNELVPNLKLGKSVRELLETTPDTSEVVRWK
                     P"
     gene            1176..2864
                     /locus_tag="VGD38_03625"
     CDS             1176..2864
                     /locus_tag="VGD38_03625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727133.1"
                     /translation="MSQLLTLIWLKWRLLRNSLRSSKAVVNKVASILGMLMALGFSIV
                     IALVLGVVAYVISKPGTLSSILSRSATREVSIAATTEFIFFSIFGFMYLMWATLPLSI
                     GGSKQFDAGKLLLYPITLRKLFAVDFISELTTLHSVVAIPAIIAIAIGAGLGTGNLPA
                     ALIAAVPIAFFGVALSKWLSTIMGSLLRRKRGRGETIVALIGAFAGLGGALIGQIAPM
                     LFQHAESFRSLRWTPPGAAALLLVSSSPAGGFGYAAGFLTLSAYSIALIVFTYAIARR
                     AALGLEGRRKRRAEREARTDAQDYAGWKLPLLPADLTAVIEKELHYAMRNAQMRMMAL
                     MPLILIIIRVVNWRRMESSMSRGPDAAHEFMTYGEGLMATGGVLYVFLVLAGLSCNAF
                     AFEEGGMRTLILSPIDRRKILLGKNIAMAVMALVFTFFLLTLNAIIFRDLTVGTVLFL
                     ALSFVIFAALMSTIGNWLSIRFPKRMAFGKRMNVSGVAGVLLIPIVLVLGIAPLLATL
                     AGYLLRSFLIEYVTLAVLALFCLGIYALSLNIHGQTLARREIDILEAVREPTDE"
     gene            2967..>3197
                     /locus_tag="VGD38_03630"
     CDS             2967..>3197
                     /locus_tag="VGD38_03630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding domain-containing protein"
                     /protein_id="HEY0727134.1"
                     /translation="MARRRFRSNQRHEPTTERSFQEYILSTPAPQTSRTELLRLIRGG
                     EDTFLELKVKLSNTEKIAQEIVALANTGGGVIV"
BASE COUNT          608 a          890 c          975 g          724 t
ORIGIN      
        1 agcttcgcga tctcgcgcgg caccacttcc agcacgactg caaaagcgcc cgcatcttcc
       61 aacgctttcg catcgtcaag taacggttgc gcagcctgcg cggtcttgcc ctgcacgcga
      121 tacgcgccca gttgcttgat cgactgcggt gtcaggccga tgtgacccat gacgctgatc
      181 tcttcgtcga ccagacgttt gacgagttgc acacgtttgt gaccgccttc gagtttgatc
      241 gcttccgcgc cgccttcttt gacgagacgc agcgcgttgc gtacggcgtc gtcgtcgccg
      301 gtgtgaaaag ttccgtaagg catgtcggcg acgagcagtg cacgttgcac ggcgcgccgg
      361 acggctttca agtgaatcag gatctcatcg agcgtcaccg gcacggtgtt gccgtaaccc
      421 agaaccacgt ttccgaggct atcgccaacg agaatgacgt caatgccggc ttcatcaacc
      481 aggcgcgcgg tcggataatc gtacgctgtc agacaaacga ggcgttcacc acgctgtttg
      541 cttgatttca acgacggggc actgaccttt tccggacgtt caggctttag atatggcatg
      601 ttttggttag cgcattataa cgggaaacga cgatagggga aatggcgcag gtcagggctt
      661 ccagcgcacg acttccgagg tgtcgggcgt cgtttccaga agttcacgga ctgatttacc
      721 gagtttcagg tttgggacga gctcgttgag cgggacaagc acgaagcggc gaaggtgcag
      781 ccgtggatgt ggcagcgtga gaaactccgt gtttaatcgt tcctctttga agattagtaa
      841 atcgagatcg attgtgcgcg ggccgttgag aacatcgcgc gtgcggccga gcgaatactc
      901 gatacgcagc aggcaggcga gcaactgtac ggacgcggga agtgaaggcc cccgcagttc
      961 ggcgaccatg ttgagaaacg ccggttgatc gacgttgtcg acaggagcgg tttcgtaaat
     1021 gttggacaag cggctcacgt ccaaaccggc gtcgagcatt ccgcgcacgg cgagcagcaa
     1081 atagcctgcg cggtcgccga ggttggaacc gagcccgacg taagcgtttt ggatcatcag
     1141 cgggtcagac taacatagga accaagaaca gatacatgtc ccaactgtta accctcatct
     1201 ggctcaagtg gcgtctgctg cgcaactcgc ttcgttcgtc aaaagccgtc gtcaacaagg
     1261 tcgcgtcgat actcggcatg ttgatggcgc tcgggttttc gatcgtgatc gcgttggtgc
     1321 tcggcgttgt tgcttacgtt atcagcaagc cgggaacgtt gagcagcatc ctgagccgtt
     1381 cggcgacgcg cgaggtttcc atcgcggcga cgacggagtt catcttcttt tcgatcttcg
     1441 ggtttatgta tctgatgtgg gccacgttgc cgttgagtat cggcggcagc aagcagttcg
     1501 acgcgggcaa gctgctgctg tatccgatca cgctgcggaa gttgtttgcg gtcgatttca
     1561 tcagtgaact tacgacgctg cactcggttg tcgcgatacc ggcgatcatc gcgatcgcga
     1621 tcggcgcggg acttggcacg ggcaatctcc cggcggcttt gatcgcggcc gtgccgatcg
     1681 cgttttttgg cgtggcgctg tcgaagtggc tttcgacgat catgggatcg ctgctgcgtc
     1741 ggaaacgcgg gcgtggtgaa acgatcgtcg ccttgatcgg tgcgttcgcg ggactcggcg
     1801 gcgcgctcat cggacagatc gcgccgatgt tgtttcaaca cgcggagtcg tttcgttcgt
     1861 tgcgctggac gccgccgggc gccgccgcgc tgttgctggt ttcgagctcg ccggccggtg
     1921 gattcggata cgcagccggg tttctgacgc tttccgcgta ttcgatcgca ctgatcgttt
     1981 tcacgtacgc gatcgcgcgc cgcgcagcgc tcggactcga ggggcgccgc aaacgcagag
     2041 cggaacgtga agcacgaacg gacgcgcagg attacgcggg ttggaagctg ccgttgttgc
     2101 cggcggatct cacggcagtg atcgagaaag agttgcacta cgcgatgcgc aacgcgcaga
     2161 tgcgcatgat ggcgctcatg ccgttgatac tgatcatcat ccgagtggtg aactggcgcc
     2221 ggatggaaag cagtatgagc cgtggtccag acgccgcgca cgagttcatg acatacggcg
     2281 agggactgat ggccacgggc ggcgtgcttt acgtctttct ggtccttgcc ggtctttcct
     2341 gtaacgcgtt tgcgtttgaa gaaggcggca tgcgaacgtt gattctctcg ccgatcgatc
     2401 gccgcaagat actgctcggg aaaaacatcg cgatggctgt catggcgctt gtcttcacgt
     2461 tcttcctgtt gactctgaac gccatcatct ttcgcgatct cactgttgga accgtgcttt
     2521 ttctggcgtt gagtttcgtc atcttcgcgg cgttgatgtc gactatcggc aactggctgt
     2581 cgatacgttt tccgaaacgc atggccttcg gcaaacgcat gaacgtttcg ggtgttgccg
     2641 gagtgttgct gatcccgatc gtcctcgtgc tcggcatcgc gccgttgttg gcgacgctcg
     2701 cgggctatct cctgcgcagt ttcttgattg aatacgtgac gctcgcggtg ttggccctgt
     2761 tctgccttgg catttacgcg ctttcactca acattcacgg ccagacgctc gcgcggcgcg
     2821 agatcgacat cctcgaagcc gtccgagagc caaccgacga gtagttgtgt tacactcgcc
     2881 gcctgacaaa tggaagtgtt tgaaagctta tgaagccagt ggcgcctcgt ggcgtccggg
     2941 cgggttagag ccccgtcaag acacaaatgg ctcgcagaag atttcgcagc aaccaacggc
     3001 acgaaccgac cacggagcgt tcctttcagg aatacatcct ctccactccc gcgccgcaaa
     3061 catcgagaac cgaactcctt cgcctgattc gcggaggtga agacactttt ctcgaactca
     3121 aggtcaaact ttccaacact gaaaagatcg cgcaggagat cgtcgcgctc gcaaataccg
     3181 gcggtggcgt gattgtt
//
LOCUS       DASWTX010000235         2022 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_328888, whole genome shotgun sequence.
ACCESSION   DASWTX010000235 DASWTX010000000
VERSION     DASWTX010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2022
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328888"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1318
                     /locus_tag="VGD38_03635"
     CDS             <1..1318
                     /locus_tag="VGD38_03635"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY0727135.1"
                     /translation="AGSVAEGLKQFRTESPAAVLLDIDLPDGSGLDVLREIKSEQPGA
                     IVIMITGNVQIANTISALRGGAYDFIGKPINLEELRVTIRNAIETRHLRREVEQVRKE
                     RAREFNFRQIVGESPAMKKMLGLAAKVAESEVSSVLLQGESGTGKDLVAKAIHYGSQR
                     SDRPFVAVNCAALPATLIESELFGYEKGAFTDAKARKEGLFEQAEGGTLLLDEIGELE
                     LSLQAKLLRVLEEGAFRRVGGLKDIPLDVRVLAASNRDLKTESEAGRFRLDLYYRLSI
                     IQIDIPPLRDRGDDVLLLSQHYIDTIGARLKRNKKISRLSSEAVDVFRKYRWPGNVRE
                     LRNVIERALILEDSDEITTEYLPGGLLEAPRLEHASGGNAATKFLLPDQGISLDEAEL
                     SFVRQAIERSGGNQTRAAELLGISRDQLRYRLKKLDDAQAIADAET"
     gene            1322..>2022
                     /locus_tag="VGD38_03640"
     CDS             1322..>2022
                     /locus_tag="VGD38_03640"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEY0727136.1"
                     /translation="MTSTDPTLVHNQLQPEEALQRSQKELADIKFALDESAIVAITDQ
                     RGIINYVNDKFCQISKYSREELLGQDHRIINSAYHPKEFIRNVWTTIAGGKVWRGEIK
                     NRAKDGSFYWVDTTIVPFLNAEGKPYQYVAIRNDITERKRAEQQIREQAALLDQAQDA
                     ILVRDLDQKILFWNKGAEKIYGWAAEEALGKNARELLFKESSAQFEQAAQAVIQKGEW
                     QGEIRQTRRDGTEITV"
BASE COUNT          489 a          585 c          584 g          364 t
ORIGIN      
        1 agcgggttcg gtggctgagg gtctgaaaca attccggacc gagtcgccgg ccgcggttct
       61 gctcgacatc gatctgccgg atggttccgg tctcgacgtg ctgcgtgaga tcaagagcga
      121 acagcccggg gcgattgtga tcatgatcac gggcaacgtg cagatcgcaa acacgatctc
      181 tgccctgcgc ggcggcgctt acgacttcat cggcaagccc atcaatctcg aagagctgcg
      241 cgtcacgatt cgtaatgcga tcgagacacg gcacctgcgg cgcgaagtcg aacaggttag
      301 aaaagagcgg gcgcgcgaat ttaatttccg ccagatcgtg ggtgagtcgc cggcgatgaa
      361 gaagatgctc ggtctggcgg caaaggtcgc agagagtgaa gtctcgtccg tgttgctgca
      421 gggtgaatcc ggaacgggaa aggatctcgt cgcaaaggcg atccattatg gatctcaaag
      481 atcggaccgg ccctttgtcg cggtgaattg cgccgcgctg cccgccacgc tcatcgaatc
      541 cgagctcttc ggttacgaaa aaggcgcgtt caccgatgcg aaggcgcgca aagaaggact
      601 gttcgaacag gccgaaggcg gcacactcct gctcgacgaa atcggcgaac tcgaactgtc
      661 gctgcaagcg aagttgttgc gcgtgttgga agaaggagct ttccggcgcg tcggtggttt
      721 aaaggacatt ccgctcgacg tgcgcgtgct cgccgcctcg aaccgcgatc tgaaaacgga
      781 aagcgaggcc gggcgttttc gactcgatct ttattaccgt ctctcgatta ttcagatcga
      841 cataccgccg ttgcgcgacc gcggcgacga cgtcctgctg ctgtcgcaac actacatcga
      901 cacgatcggc gcgcggctca aacgaaacaa gaagatctct cgcctttcgt ccgaagccgt
      961 ggacgtgttt cgaaaatacc gctggccggg taacgttcgt gagttgcgca acgtgatcga
     1021 gcgggcgctc attctcgaag acagtgacga gatcacgact gaatacctgc ccggcggact
     1081 cctggaagca ccgcggctgg aacacgcgtc cggcggcaac gccgcaacta agtttctctt
     1141 acccgatcag ggaatctcgc tcgacgaagc cgaactgtcc tttgttagac aagccatcga
     1201 gcgcagcggc ggcaatcaaa cacgcgccgc cgaactactc ggcatttcgc gcgatcagct
     1261 aagataccgg ctgaagaaac tcgatgacgc gcaagccatc gccgacgccg agacgtaatc
     1321 catgacgtcc actgatccaa ccctcgtcca taatcagctc cagcccgaag aagctctaca
     1381 acgttcccaa aaggaacttg cggacatcaa attcgcgctc gacgaatcgg ccatcgtcgc
     1441 gatcacggat caacgcggca tcatcaacta cgtcaacgac aagttctgcc agatctcaaa
     1501 atactcgcgc gaggaactgc tcggccagga ccatcgcatc atcaactccg cgtatcatcc
     1561 gaaagagttc atccgaaatg tgtggacgac gatcgccggc ggcaaagtct ggcgcggtga
     1621 gatcaagaac cgcgcgaagg acggcagctt ttactgggtc gacacgacaa ttgttccctt
     1681 tctcaacgcc gaaggaaagc cctaccagta tgtcgcgatc cgtaacgaca taaccgaacg
     1741 caaacgagcc gaacaacaga tccgcgaaca ggctgcgctt ctcgatcagg cgcaggacgc
     1801 gattctcgtg cgcgatctcg atcagaagat cctgttctgg aacaagggcg ccgaaaagat
     1861 ttacggctgg gcggctgaag aagcgctcgg caagaacgcc cgtgaactgc ttttcaaaga
     1921 gtcgtcagcg cagttcgaac aggcagcgca ggccgtgatt caaaagggag agtggcaggg
     1981 cgaaatacgt caaacacgcc gcgacggaac agagatcacc gt
//
LOCUS       DASWTX010000236         3871 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_154329, whole genome shotgun sequence.
ACCESSION   DASWTX010000236 DASWTX010000000
VERSION     DASWTX010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3871)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3871)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3871
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154329"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..520)
                     /locus_tag="VGD38_03645"
     CDS             complement(<1..520)
                     /locus_tag="VGD38_03645"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015022.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0030259 - lipid glycosylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0727137.1"
                     /translation="MRIVLNTFGSFGDIHPYMAIAMELQSRGHTPVVATMEIYREKIE
                     GAGLEFFPVRPNIPQPKEQDAELIGKIMEPKTGARFLTEELIFPAVRDSYNDLVEAVA
                     GADLLVTHPAAPAGPLVGRKLEMPWISTILAPLSFFSAYDPPVPPFWQWTSKLSVLGP
                     GFMRFFLDTMKST"
     gene            complement(525..1277)
                     /locus_tag="VGD38_03650"
     CDS             complement(525..1277)
                     /locus_tag="VGD38_03650"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR00121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004077 - biotin-[acetyl-CoA-carboxylase]
                     ligase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HEY0727138.1"
                     /translation="MKPRILRYESVTSTNSEVVRLAVEGADEGLAIVADEQTAGRGRL
                     QRAWSSPKGAGLYFSILLRPRIAVDRWPLITFVAALATSDALLEGGAVHTDIKWPNDL
                     LANERKICGILAEAIETPTGRAVVVGIGINLTNNAFPQELNNVATSVAQESGRQPERE
                     TILAALLSALARWYSLLHEPDGAQKIVAAWTSRSSYATDKLVQVTNGDEVLQGITRGI
                     ENDGALRLETANGIQLIRAGDVTSVRPARMNA"
     gene            1346..2002
                     /gene="modB"
                     /locus_tag="VGD38_03655"
     CDS             1346..2002
                     /gene="modB"
                     /locus_tag="VGD38_03655"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HEY0727139.1"
                     /translation="MIDWFPIRLSFAVATAATLIALVAGSALAWLLARKRFPGRNLID
                     ALVTLPLVLPPTVLGYYLLVLLGSRSTIGAFLDRTFGIRLTFTVTAAIIAATIHALPL
                     VTKSLRAAFESVNTDLEAAARTLGLNNRRIFFRVTLPLAAKGVLAATALAFARALGDF
                     GVTIMIAGNIPGKTQTASVAIYDAVQAGRDNDALTLSVIVSVLATILLYVINRFGKVL
                     "
     gene            complement(1977..3239)
                     /locus_tag="VGD38_03660"
     CDS             complement(1977..3239)
                     /locus_tag="VGD38_03660"
                     /inference="COORDINATES: protein motif:HMM:NF019040.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1501 domain-containing protein"
                     /protein_id="HEY0727140.1"
                     /translation="MKRRFFIKSGSIALASVGLSLSAPGFLQRALLANERSGGKRKTL
                     VAIFQRGAVDGLNMIVPFGESNYYDLRPGIAIPKPNGSNAEAAISLDGFFGLHPSMSS
                     LKPLWDSKRLAIVHASGSPDNTRSHFDAQDYMESATPGVKSTSDGWLNRYLQSKKEDA
                     SPFRAISMTQQMPRAMQGRAQVLAMSNLSNFAIRAGKSSASVQGGFEAIYSRDKNEML
                     AETGRETFDAINYLKEVNPAQYKPENGAQYPQGPLGNSLRQIAQLIKAGVGLEIAFTE
                     VGGWDTHVNQGNARGQLANRLQEFSSAIAAFHQDLGQRMDDVVVMTMSEFGRTVKENG
                     NRGTDHGHANAMLVLGNSVRGGQVYGKWPGLKNDQLFEGRDLALTTDFRDVFGEVAAR
                     HLGATDLKSVFPRYAISESNFKGLFRNG"
     gene            complement(3252..>3871)
                     /locus_tag="VGD38_03665"
     CDS             complement(3252..>3871)
                     /locus_tag="VGD38_03665"
                     /inference="COORDINATES: protein motif:HMM:NF020390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1800 family protein"
                     /protein_id="HEY0727141.1"
                     /translation="LARHPATAKFIATKLVRYFVSDTPPPALVDRVAAAFTKSDGDIR
                     ETLKAIFFSKEFNSPEAYRVKIKRPFELVVSAIRTLGADTNGGPGTHQWIARMGEPLY
                     GFQTPNGYSDAAESWVNTGGLLERMNFGLALAGNRIQGTRVDLAKLNAPEKSKLIDES
                     LKMIVAGDISTATRETLMKQIDETNADTAAKVVGLILGTPEFQRQ"
BASE COUNT          745 a         1200 c         1093 g          833 t
ORIGIN      
        1 aagtgctctt catcgtgtcg agaaagaacc tcatgaagcc tgggccaagc acgctcaact
       61 tgctggtcca ctgccagaac ggcggcaccg gcggatcgta agcggaaaag aacgacagcg
      121 gcgcgagtat cgtggagatc cacggcattt cgagcttgcg gccaaccaat ggaccagcag
      181 gcgccgccgg atgcgtcacg agcaaatcgg cgccggcgac tgcctcaacg agatcgttgt
      241 aactgtcgcg gaccgcggga aagatcagct cttcagtgag gaacctcgca cctgtcttcg
      301 gctccatgat cttgccgatc aattccgcgt cctgttcttt gggctgcgga atgttcggac
      361 gcaccgggaa aaactcgagt cccgcgcctt cgatcttctc gcgatagatc tccatcgttg
      421 cgaccacggg cgtgtgaccg cgcgattgta gctccatcgc gatcgccatg tacggatgga
      481 tgtcgccaaa cgatccgaaa gtgttcagca ctatgcgcat tgaattaagc gttcatcctc
      541 gccggccgga cgctcgtgac gtcgcccgcg cgaatcaact gaattccgtt cgcggtttcg
      601 agacgtaacg cgccatcgtt ctcgatgccg cgcgtgatgc cttgtaaaac ttcgtcgccg
      661 ttcgtgacct ggaccagctt gtccgtcgcg taagaggaac ggctggtcca cgccgcgaca
      721 atcttctgcg cgccgtctgg ttcgtgcagc aatgaatacc agcgcgcgag tgcgctcagc
      781 agcgcggcga gtatcgtttc gcgttccggt tggcgtccgg attcctgcgc caccgatgtt
      841 gccacgttat tcaattcctg ggggaaagca ttgttcgtta ggttgatgcc gatgccgacg
      901 acgaccgcgc ggccggttgg tgtctcgatt gcttcggcga gtatgccgca gatctttcgc
      961 tcgttggcga gcagatcgtt gggccacttg atatctgtgt gcactgcgcc gccttcgagc
     1021 agcgcgtcgc tcgtggccaa agccgcgacg aaagtgatga gcggccaccg atcgacggcg
     1081 atgcgcggcc gcaacaggat gctgaaatac aagcccgcgc ctttcggcga cgaccatgcg
     1141 cgctgcaaac gtccgcgccc cgcggtctgt tcgtcagcca caatcgcgag tccctcgtcc
     1201 gcgccctcga ccgcgaggcg cacgacttcg ctgttggtcg aggtgactga ctcgtagcgc
     1261 aaaatccgtg gtttcatagc cgccgccgat tgtaagacac aaaagccaca aataggagaa
     1321 ggtctgataa gcttagccaa accccgtgat cgactggttc cccatcaggc tttccttcgc
     1381 tgtggccacc gccgcaacgc tgatcgcgct cgtcgcgggc tcggcgctgg cgtggctgct
     1441 cgcgcgcaaa cgttttcccg ggcgcaacct gatcgatgcg ctcgtcacgt tgccgctcgt
     1501 actgccgccg actgtactcg gttactacct gctggtcctg cttggttcgc gttcgacaat
     1561 cggagcgttt ctcgatcgca cgttcggcat ccgtctgacg ttcacagtca cggccgcgat
     1621 catcgctgcg acgatccacg ccttgccgct cgtcacgaag agcctacgcg ccgcgttcga
     1681 atccgtgaac acggatctcg aagccgcagc acgcacgctg ggtctcaaca accggcggat
     1741 ctttttccgg gtaacgttgc cgttagcggc gaaaggtgtg ttggcggcga cggcgctcgc
     1801 gtttgcgcgc gcgctaggcg attttggcgt gacgatcatg attgccggaa acattcccgg
     1861 caaaacgcaa actgcgtcgg tagcaatcta cgacgcagtg caggcgggac gcgacaacga
     1921 cgcacttaca ttgtcagtga tagtgtcggt actcgcgacg atattactgt acgtcatcaa
     1981 ccgtttcgga aaagtccttt gaagttcgat tcactaatcg cgtaacgggg aaacacggac
     2041 ttcagatccg ttgcgccgag atgacgcgcg gcgacttcac caaacacatc gcgaaagtcc
     2101 gtcgtcaacg cgagatcgcg tccctcaaaa agctgatcgt tcttgagccc gggccacttt
     2161 ccgtaaacct gaccgccgcg cacgctgttg cccagcacca acattgcatt cgcatgcccg
     2221 tggtccgtac cgcgatttcc gttttctttg accgtgcggc caaactccga catcgtcatc
     2281 acgaccacgt cgtccattcg ttggcccaaa tcctgatgaa acgccgcaat cgccgagctg
     2341 aactcctgta atcgatttgc caactgcccg cgcgcgttgc cctggttcac gtgcgtgtcc
     2401 caaccgccga cctcggtgaa ggcgatctcc aaaccaacac cggctttgat caactgcgcg
     2461 atctgacgca gcgagttgcc caatggacct tgcggatact gcgcgccgtt ctccggtttg
     2521 tactgcgcgg ggttcacttc tttcaggtag ttgatcgcgt caaacgtctc gcggccggtt
     2581 tcagccagca tctcgttctt gtcgcgcgag tagatggcct cgaaaccacc ctgcacactc
     2641 gccgacgact taccggcacg aatcgcgaag ttcgataggt tcgacatcgc gagcacctgc
     2701 gctctgccct gcatcgcgcg cggcatctgt tgcgtcatcg aaatcgcccg aaacggcgat
     2761 gcgtcttctt tcttgctttg cagataacga ttcaaccagc cgtcgctcgt cgacttcaca
     2821 cccggcgtcg cggactccat gtagtcttgc gcgtcgaagt gcgaacgcgt gttgtcgggc
     2881 gagccggagg cgtgaacgat cgcgaggcgc ttcgaatccc acagcggctt gagcgagctc
     2941 atcgacggat gcaggccaaa gaagccgtcg agactgatcg ctgcttccgc gttgctgccg
     3001 tttggtttcg gaatcgcgat ccccggccgc aggtcgtagt aattcgactc gccaaacgga
     3061 acgatcatgt tcagaccgtc aaccgcgcca cgctgaaaga tcgcgacgag cgtcttgcgt
     3121 ttgccgccac tgcgctcgtt cgcgagcagc gcgcgctgaa gaaaacccgg cgctgagagc
     3181 gataggccaa cactcgccaa cgcgatactg cccgacttga taaagaatct acgcttcata
     3241 atcggattcc tttactgtct ctgaaactcc ggcgtgccga gaatcaagcc gacgaccttc
     3301 gctgccgtgt cggcgttcgt ctcgtcgatc tgtttcatca acgtctctct cgttgcagtg
     3361 gagatgtcgc cggcaacgat catctttaac gactcgtcga tcagtttcga cttctcaggc
     3421 gcgttcagtt ttgcgagatc gacgcgcgtt ccctgaatgc gattgcccgc cagtgccaat
     3481 ccgaaattca tgcgttcgag taagccgccg gtgttgaccc agctttcggc cgcatcggaa
     3541 taaccgttcg gcgtttgaaa accgtaaagc ggttcaccca tgcgcgcgat ccattgatgc
     3601 gtgcctggtc caccattcgt gtccgcgccg agcgttctga tcgcactgac cacgagttca
     3661 aacggccgtt tgatcttgac gcgatacgct tccggcgagt tgaactcttt tgagaagaag
     3721 atggctttca gcgtttcgcg aatgtcgccg tcgctcttcg tgaatgcagc cgcaacacga
     3781 tcgaccagcg ccggcggcgg tgtgtcggaa acgaagtaac gcacgagttt tgtcgcgatg
     3841 aacttcgccg tggccgggtg acgcgcgaga a
//
LOCUS       DASWTX010000237         3910 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_307283, whole genome shotgun sequence.
ACCESSION   DASWTX010000237 DASWTX010000000
VERSION     DASWTX010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3910
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307283"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..309
                     /locus_tag="VGD38_03670"
     CDS             <1..309
                     /locus_tag="VGD38_03670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727142.1"
                     /translation="NRLIPPMTRGNKGELFGYTDTGGGMAWTTYPYERVNFVFTFPSR
                     IDKEALKQSEPFSFSAEEMASYRKPEKTPPTDKDFDNSAPDKLEIVTIVWNGRKCADR
                     "
     gene            complement(310..2289)
                     /locus_tag="VGD38_03675"
     CDS             complement(310..2289)
                     /locus_tag="VGD38_03675"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY0727143.1"
                     /translation="MKAERWLEIETVLQDALDRPPLERASFIEEVCAGDEELKSEATT
                     LIAAYEEAADFIEQPAIARDAYVLLDLTDNAGREIGPYRIVERLGAGGMGEVYLAQDT
                     RLSRLVALKLLPVYFASDEERLRRFQSEARAASALNHPNILTIYEVGESDGVYYIATE
                     FIDGKTIGELMREQELSLAEILDCVEQVASALAVAHAAGIVHRDIKPDNIMRRHDGLL
                     KILDFGIAKLLEPAKTPDDVYDTAGFRTHTEAGLVLGTVNYMSPEQARGLSVDERTDI
                     WSLGVVLYEMLARRLPFSGATRMDTMVAILDHEPARLSDVAKEHVRSAPLLQSIVEKC
                     LSKEISGRYRTVSELLADLKTAREPAPQQQTGGFSPTALLSRRFVTPSLGLVLLLTLA
                     IAGTLLYKRSAAPNQPDTISQPRPVKLYSQMSERERLDFIAEQEQRISNMMGERPVKL
                     DENAVRFIKRYVDYRASRMIGPADQESGSMIAVYERAPPYVPMIARSFAARKVPVIIG
                     IYLPVVESAYKPCSESQFGARGLYQFLPSTAQAYGVSREEMCDAEKMAPAAAHYIADR
                     MAELGEDSQSVTLVLLSYNRGAEWVRDSLRQLRGTENYARNYWTLLANRDSLDEAFRN
                     ETERYVPSFFAAAIIGENPAVFGLKTPPLSTLATN"
     gene            complement(2286..2855)
                     /locus_tag="VGD38_03680"
     CDS             complement(2286..2855)
                     /locus_tag="VGD38_03680"
                     /inference="COORDINATES: protein motif:HMM:TIGR02999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0727144.1"
                     /translation="MKSLTADNLTGLLVEWRDGDQAALERLIPLVYDQLRRIAHRYVR
                     HERNGHTLQTSALVNEAYLRLADQKVVWQNRAHFFAVTARVMRHILIDHARRRRYAKH
                     GGEARQVSLGDAEGMSLERAAELIALEEALDELAQLDQRKSRVVELRYFGGLSLEETA
                     EALNISLMTVRRDWRAAKTWLYRRLKETE"
     gene            2995..3816
                     /locus_tag="VGD38_03685"
     CDS             2995..3816
                     /locus_tag="VGD38_03685"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEY0727145.1"
                     /translation="MKTKAVFLSLVSVVVLAFGALQVSGQSVTPGKQYVEMSRAERLV
                     FVGEQARRIAREMSGSEYEFTADFERDIQKALTQYAVRLGKTANERNGKSDLRLTLER
                     GQTHAPTIIAAFRARNVSPLIGLYLPFIESEYKNLDTGSPMGALGMFQFLPSTGERYG
                     LSVEDLLDIGKSADAAARYIADAMQVFPNDPMKEALAVLAYNRGADKTARELKVVLNE
                     QNKRCSICALTADRSKRDEAFRSESIFYVPLFFAAAIIGENPQVFGVQMQPLSSH"
BASE COUNT          823 a         1119 c         1103 g          865 t
ORIGIN      
        1 aatcgactca taccaccgat gacccgaggc aacaagggag agttgtttgg ttacactgac
       61 acgggtggag gcatggcctg gaccacgtat ccttacgaaa gggtgaactt tgttttcaca
      121 tttcccagta ggattgataa agaggctctg aaacagtcag aaccgttttc tttttccgcg
      181 gaggaaatgg cttcataccg aaaaccggaa aagacgccgc ctacggataa agatttcgac
      241 aacagtgcac ccgataaact ggagatcgtc acaatcgtat ggaacggtcg aaaatgcgcc
      301 gatcgatagc tagttcgtcg ccagcgtcga aagcggtggg gtcttgaggc cgaagacagc
      361 ggggttctcg ccgatgatgg cggcggcgaa gaagctcggg acgtagcgtt cagtctcgtt
      421 tcgaaaggcc tcgtcgaggg agtcgcggtt ggcgagcagc gtccagtaat ttcgggcgta
      481 gttttccgtg cctcgcagtt ggcgcagact gtcgcgtacc cattccgctc cacggttgta
      541 actcagcagc accaacgtga cgctctgcga gtcttcaccg agctcggcca tgcgatcggc
      601 gatgtagtgg gccgccgccg gcgccatctt ttcggcgtcg cacatctctt cacgagacac
      661 gccataggct tgcgccgtcg acggcagaaa ttgatataga ccccgcgctc cgaactggct
      721 ctcagaacag ggcttgtatg ccgattcgac tacgggtaga tagattccga tgatcaccgg
      781 caccttgcgg gccgcgaatg aacgcgcaat catcggcaca tagggcggcg cgcgttcgta
      841 aaccgcgatc atgcttccgg attcttgatc tgctggccca atcattctgg aggcgcggta
      901 atcgacgtag cgcttgataa accgcaccgc attctcgtca agcttaaccg ggcgctcgcc
      961 catcatgttt gagatgcgtt gctcctgttc ggcaatgaag tccaaacgtt cacgctcact
     1021 catttgcgaa tagagtttta ccggacgtgg ttgtgagatc gtgtctggct ggttcggtgc
     1081 cgccgaccgt ttgtatagaa gagtcccggc aatagcgagt gttagcaaca gcaccagtcc
     1141 tagtgagggt gtgacaaagc gccgagacaa gagtgcggtt ggactgaaac ctccggtctg
     1201 ttgttgcggt gcgggttcgc gagcagtttt caggtccgcc aacaactcac tgaccgtgcg
     1261 ataacgaccg gagatctctt tgctcaaaca cttctcgaca atcgactgca acaacggcgc
     1321 ggatcgaaca tgctcttttg ccacatcaga cagccgagcc ggttcgtgat cgaggatcgc
     1381 taccatcgtg tccatgcgcg tcgcgccgct gaacggcagc cgtcgcgcca gcatttcata
     1441 aagcacgacg ccgaggctcc agatgtcggt gcgctcatca accgaaagcc cgcgcgcctg
     1501 ttccggcgac atgtagttga ccgtgcccaa cacgagcccc gcttcagtgt gtgttcgaaa
     1561 tccggctgtg tcgtacacat cgtccggtgt cttcgcgggc tccaaaagct ttgcgatacc
     1621 gaagtcgaga atcttgagca ggccgtcgtg acgccgcatg atgttgtcgg gtttgatatc
     1681 gcgatgcacg atgcccgcgg cgtgggccac cgccagcgcc gacgccactt gttccacaca
     1741 atccaggatc tcggcgagcg agagttcctg ctcgcgcatc aactcgccga ttgtctttcc
     1801 gtcaataaac tccgtcgcga tgtagtaaac gccgtcgctt tcgccgactt cgtaaatcgt
     1861 gagtatgttc ggatgattca acgccgaagc cgcgcgtgct tcgctttgga aacgccgcaa
     1921 ccgttcctcg tctgaagcaa aataaacagg caacagcttc agggcgacga gacggctgag
     1981 ccgcgtgtcc tgggccaggt agacttcacc cattcctccg gcgccgaggc gctcgacgat
     2041 ccgatatgga ccaatctcgc ggccggcgtt gtccgttaaa tccaacagga catacgcatc
     2101 acgcgcgatc gccggttgct cgatgaagtc agccgcctct tcgtaagccg cgatcagagt
     2161 cgtggcttct gatttcaact cctcgtcacc ggcgcagact tcttctataa acgaggcacg
     2221 ctcgagcggc ggacgatcga gcgcgtcctg caacaccgtt tcaatctcta gccaccgctc
     2281 tgctttcatt ccgtttcctt cagacgccga tagagccacg tcttcgctgc acgccaatca
     2341 cgccgcacgg tcatcagcga aatgttcagc gcttccgctg tttcttcgag actgagacct
     2401 ccgaagtaac gcagttcgac aacacggctc ttgcgctgat cgagttgcgc gagttcgtcg
     2461 agtgcttcct ccagcgcgat cagttcggcg gcacgctcta gcgacatccc ttcagcgtct
     2521 ccgagtgaaa cctgccgtgc ttcgccgccg tgtttcgcat aacgccggcg ccgcgcgtga
     2581 tcgatcagga tgtgtcgcat cacgcgcgcg gtcacggcaa agaagtgcgc gcggttttgc
     2641 caaactactt tctgatcggc taaacgaaga tacgcttcgt tcacgagcgc gctcgtttgc
     2701 agcgtgtgac cgttgcgttc gtgccggacg tagcggtgcg cgatgcggcg cagttggtcg
     2761 tagaccagcg gtatcaaacg ctcgagcgca gcctgatctc cgtcgcgcca ttcgacaagt
     2821 aagccggtca ggttgtccgc cgtcagcgac ttcattcgcg tcgaattcta gcatcaatag
     2881 agtcgaaagt tttttgttcg cgcatgaaca ctttcgacgt gttttctcgc ttaccggcac
     2941 acgatgaaca gttttttctt cgttcctcgc ttaatatgtg gaggtcacaa acttatgaaa
     3001 actaaagcag tctttttatc gctggtgagt gtggtggtgc tggcttttgg cgccctgcag
     3061 gtcagtggcc agagcgttac accggggaaa cagtacgtgg aaatgtcgcg cgcggagcgg
     3121 ctcgtgtttg tcggcgaaca agcgcggcgc attgcgcggg agatgtcggg aagcgaatac
     3181 gaattcaccg cggattttga acgcgatatt cagaaggcgc tgacgcaata tgccgtacgt
     3241 ctcggcaaga cggctaacga acgcaacggt aagagcgatt tgcgtttgac gttggagcgc
     3301 ggccagactc acgcgccgac gatcattgcc gcgttccgcg cgcgcaacgt ctcgccgctc
     3361 atcggtctat acctgccgtt tattgaatcc gagtacaaga acctcgatac gggaagcccg
     3421 atgggcgcgc tcggtatgtt tcagtttctg ccgtcgaccg gtgaacgcta cggactttcc
     3481 gtcgaggatc ttctggacat tgggaaatct gctgacgccg ccgctcgcta catcgctgac
     3541 gccatgcagg tcttccccaa cgatccgatg aaggaagcgc tcgctgtgtt ggcctacaat
     3601 cgcggcgctg acaaaaccgc tcgcgagttg aaagtggtgc tcaacgaaca gaacaaacgt
     3661 tgcagcatct gcgcattgac cgccgaccgc agcaaacgcg atgaagcgtt tagaagcgag
     3721 agcatctttt acgttccgct tttcttcgcc gccgcgatca tcggcgagaa cccgcaggtg
     3781 tttggggtgc agatgcagcc gctctcgtcg cactaatcat ggtttagtca caaagaggca
     3841 caagaagcac aaggagatca cgttttgagt tcaaccttta ggttgtttcg gaccagagca
     3901 agctaaagct
//
LOCUS       DASWTX010000238         5619 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_132548, whole genome shotgun sequence.
ACCESSION   DASWTX010000238 DASWTX010000000
VERSION     DASWTX010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5619
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132548"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..634)
                     /locus_tag="VGD38_03690"
     CDS             complement(<1..634)
                     /locus_tag="VGD38_03690"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0727146.1"
                     /translation="MERVLVIDDDVGLCELVGEYLQPEGYTVEAIHNGERGIDRALSN
                     EHDLVVLDVMLPGTNGFDVLRRIRARSRSPVLMLTARGDDVDRIVGLEIGADDYLPKP
                     FNPRELVARIRAVLRRAQPIESAAAARETIRVGDIEMDSNTRNVRRSGEIVELTGVEY
                     DLLEILLRNAGQIVKREDLVKDVLGRELSPFDRSIDMHVSNLRKKLGHQLN"
     gene            791..3814
                     /locus_tag="VGD38_03695"
     CDS             791..3814
                     /locus_tag="VGD38_03695"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0727147.1"
                     /translation="MTRIVTAIALCLLTLGFADVGYSQQRPGSVRGQVLDELGGAIVG
                     ASVTAIDATGKEKSVVTNDNGTYTITGLTPGKYTLRVINAGFAMYENAEVDVVSGRPL
                     ELDVTLKVAIEEQRVTVATDNRELSTEPENNAGAIVMKGEDLDTLPDDPDDLAAALQA
                     LAGPSAGPNGGQIFVDGFTGGRLPPRASIREIRINSNPFSAEFDRLGFGRIEILTRPG
                     SERFRGQVSLNFNDDALNARNPFADSRPPIQTRQYGGNFGGPLRKGKASFFVDFEKRD
                     IDDEALIVATILDANNNIVGFTETAPIPSRRTSFSPRIDYQLNPNNTLIARYNYTRNA
                     RVVGVGGFSLPSRAYDSANTEQSIQLTETAVINKTIVNETRFQFEHTRNEQDADNSIP
                     TIDVQDAFTGGGSQVGQSNSTDKEIELTNNTSFAIGQHSLKTGLRYRWIKVSQFSPQN
                     FGGTYTFFGGVDGVTSIERYRRTIVLPQQGFTPLEIRLMGGGASQFRLSSGNPETDVT
                     QWDVGGFIQDDWKVRPNLTLSLGLRYENQKNIDSNLNFGPRLGFAWQPGGTQSKTVIR
                     GGYGVFYDRISENLTMQALRLNGVTQQQFTVQNPDFFPLIPTAEQLVSFAVPGTVYRL
                     AEGLQAPYTLQGVFSVERQLPRNLTIAASYINIRTLHVLRTRPLNAPLPGTFVPGLPN
                     SGVRPVNCSDFIPPDINPSPRCNIFEYESSGRYNQNQFIVNVNSRLHRNLTMNAYYVL
                     AKANSDADGTGSFPANPYDLSTEYGRASTDIRHRFVLRGNFRAPWGITFDPFIIVQSG
                     RPFNITLGRDINGDTLNTERPSLAPSGADCSDTLNFRCTPFGNFKLTFAPGDVMIPRN
                     FGEGPGSTTVNVRVSKTWSFGSEGGASANNQQNPQGQRGDQRTVMGGGMAGGGRPGGG
                     GGPGGPGGGGRGGFGGPGGGFGGGGGGNGRYNLTFSVNFQNLLNHVNLNNPVGNLGSA
                     LFGQSTATAGVFGGFGGGGNAAYNRRIDAQIRFSF"
     gene            complement(3811..4353)
                     /locus_tag="VGD38_03700"
     CDS             complement(3811..4353)
                     /locus_tag="VGD38_03700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727148.1"
                     /translation="MKIPHVIRFLFCAAILAFAPAVFSQEADAARDKTRERLNALLQR
                     VGPDMNVTFKPSSKSQFVFTGVMKDGLKNVEQFEIVISVTTKDTIGFRVFPHYKGTYI
                     NIDKARNPTQLLRKLAQLNDSTFLFWGADDSGDVFTGYTFTLESGFPDKAIEIVLSSI
                     KNSDQFVGEMRPAIDGSGAN"
     gene            4510..>5619
                     /gene="thrC"
                     /locus_tag="VGD38_03705"
     CDS             4510..>5619
                     /gene="thrC"
                     /locus_tag="VGD38_03705"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEY0727149.1"
                     /translation="MFVQRCISCENEFQLDERMYVCSRCGDLLDIERSEPLRPQRVEE
                     LPALWLARLQSREARDRSGVWRFREVLPFGADEAVVSLGEGNTPLYDAPRSAEYCGLA
                     SLRLKHQGNNPTGSFKDTGMTVAVTQALKLGMRLVACASTGNTAASLAAYAARARMSC
                     AILVPEGQVSDAKLAQALDYGAKVLEIEGNFDVCMRVIQELAEQSSLYLVNSINPFRI
                     EGQKTVAFELAEQLEWNVPDHLVVPGGNLGNSSALGKGFRELFGHGFTRKQPRISVIQ
                     AEGAAPFARFARDVRSGFVNEKQPHTLASAIKIGAPVSWKKSWRAVSETGGHVITVSE
                     QEIADAKAMIGRDGVGCEPASATTVAGIRRLVADGA"
BASE COUNT         1149 a         1578 c         1682 g         1210 t
ORIGIN      
        1 cgttgagctg gtggcccaac ttcttgcgca ggttactgac gtgcatatcg atgctgcgat
       61 cgaacggcga cagttcgcgt ccgagaacgt ccttcaccaa gtcttctcgt ttgacgatct
      121 ggccggcatt gcgcagcagt atttcgagta gatcgtattc aacccctgtt agttcgacta
      181 tttctcccga gcggcggaca ttgcgggtat tggaatccat ttcgatatcg ccaacgcgaa
      241 tcgtctcgcg agccgcagcc gcggattcga ttggctgcgc gcgccgcagc acggcgcgaa
      301 tgcgagcaac cagctcgcga ggattgaaag gctttgggag gtaatcatcg gcgccgattt
      361 ccagaccaac gatgcgatcg acgtcatcgc cacgtgcggt gagcatcagc acgggactgc
      421 gcgaacgcgc tctgatccgt cgcaacacgt cgaaaccgtt cgtgcctggg agcatgacgt
      481 cgaggacgac gagatcgtgt tcgtttgaca gagcacgatc gatcccgcgc tcgccgttgt
      541 gaatcgcttc aaccgtgtag ccttcgggtt gaagatactc gccaacgagc tcgcacagtc
      601 cgacgtcgtc gtcgattaca agcacgcgtt ccataggctg ctcagccaaa tttaaagaca
      661 tcccgggaat cctacaatag ccgccggttt ccatccgtaa agaagtgtca accttaaact
      721 tcacagaact gacaaaactt tacaatccat tgacagactc tttacgcctg ttttagtaca
      781 atccgccccc atgaccagaa tcgtaaccgc catcgccctc tgcctcttga ccctcggttt
      841 tgcggacgtt ggttactcgc agcaacggcc cggatctgtc cgcggccagg tgctcgacga
      901 gttgggcggc gccatcgtcg gcgcgagcgt gaccgcgatc gacgcgacgg gcaaagagaa
      961 gtcggttgtc acgaacgaca acggcactta cacgatcact ggtctgactc ccggaaagta
     1021 cacgctgcgc gtgattaacg ccggttttgc gatgtatgag aacgcggaag tcgacgttgt
     1081 ttccggcaga ccactggaac tcgacgtcac gttgaaagtc gcgatcgaag agcagcgcgt
     1141 gaccgtggcc actgacaatc gcgagctgag caccgaaccc gaaaacaacg ccggcgcgat
     1201 cgttatgaaa ggcgaagacc tcgatacgct gcctgacgat ccggacgacc tcgcggctgc
     1261 gttgcaagca ctcgccggcc catcggctgg tccaaacggc ggccagatct tcgtcgacgg
     1321 tttcaccggt ggccgcctgc cgccgcgcgc ttcgattcgc gagattcgga tcaactcaaa
     1381 tccattctcc gcggaattcg atcgtctcgg ctttggccgc atcgaaattc tgacgcgccc
     1441 cggcagcgag cgttttcgcg gccaggtttc gttgaacttt aacgacgacg cgctcaatgc
     1501 gcgtaatccg tttgctgata gtcgtccccc aattcaaacg cgccagtacg gcggcaactt
     1561 cggtggtcca ttgcgcaagg gcaaggcctc gttcttcgtc gatttcgaga aacgggacat
     1621 cgacgacgaa gcgctgatcg tggccaccat tctcgacgcc aacaacaaca tcgttggctt
     1681 caccgagaca gcgcctatcc cgagccgccg cacttcgttc agcccgcgta tcgactatca
     1741 gcttaatccc aacaacacgc tgatcgcgcg ttacaactac acgcggaacg cgcgcgtggt
     1801 cggcgtcggc gggttttcac tgccgtcgcg cgcttacgac tcggccaaca ccgaacagag
     1861 cattcagctc accgaaaccg ccgtcatcaa caaaacgatc gtcaacgaaa cgcgctttca
     1921 gttcgaacac acccgcaacg agcaggacgc ggacaattcg attccgacca tcgacgtgca
     1981 ggacgcgttt acgggcggcg gatcgcaggt gggccagtcg aacagcactg acaaagagat
     2041 cgagctgacg aataacacgt cgtttgcgat aggccagcat tcgttgaaga cgggtcttcg
     2101 ctatcgttgg atcaaggttt cgcagttctc accgcaaaac ttcggcggca cgtacacgtt
     2161 cttcggcggc gttgacggtg tcacaagcat cgagcgctat cgacgcacaa tcgttctacc
     2221 acagcagggc tttactccgc ttgagattcg cttgatgggt ggtggcgcga gccagtttcg
     2281 tttgtcgtcc ggcaatccgg aaacggacgt tacgcaatgg gacgtcggcg gtttcatcca
     2341 ggacgattgg aaagtccgcc cgaacctgac gctgagtctc ggactgcgtt acgagaacca
     2401 gaaaaacatc gacagcaatc tcaacttcgg tccgcgtctc ggtttcgcgt ggcagccggg
     2461 cggcacgcaa tcaaagaccg tcatacgcgg tggttacggt gttttttacg atcgcatcag
     2521 tgaaaacctg acgatgcagg cgttgcgttt gaacggcgtc acgcagcaac agttcaccgt
     2581 gcagaatccg gatttcttcc cgttgattcc gacagccgag caattggtct cgtttgctgt
     2641 cccgggaact gtttaccgcc tcgccgaagg acttcaggcg ccgtacacgt tgcagggagt
     2701 gtttagtgtc gagcgccagt tgccgcgcaa cctgacgatc gccgcgagct acatcaacat
     2761 tcgcacgctg cacgtgttgc gcacgcgtcc gttgaatgcg ccgttgccgg gcacgttcgt
     2821 tccgggcctg ccgaacagtg gcgttcgtcc ggtgaattgc tcggatttca ttccgccgga
     2881 catcaacccc tcgccgcgtt gcaatatctt tgaatacgag tcgagcggcc gttacaacca
     2941 gaaccagttc atcgtcaacg tcaacagccg tctccatcgt aacctgacga tgaacgcgta
     3001 ctacgttttg gcgaaagcaa acagcgacgc tgacggcacg ggaagctttc ccgcgaatcc
     3061 ttacgacctg agcactgagt atggacgcgc ttcgaccgac attcgtcacc gctttgtgtt
     3121 gcgaggtaac ttccgcgcgc cgtggggtat cacgtttgac ccgttcatca tcgtgcagtc
     3181 gggccggcct tttaacatca cgctcggccg cgacatcaac ggcgacactt tgaatactga
     3241 aagaccgtcg ctcgcaccgt ccggcgctga ctgttcggac acgctcaatt tccgctgcac
     3301 gccgtttggt aacttcaaac tgacgttcgc gccgggcgac gtgatgattc cgcgcaactt
     3361 cggcgaaggg ccgggttcga cgaccgtgaa cgtgcgcgtc agcaagacgt ggagcttcgg
     3421 ttctgaaggc ggcgcctcag cgaataacca gcagaacccg caaggtcagc gcggcgatca
     3481 gcgcacggta atgggcggtg gcatggctgg cggcggtcgt ccgggtggcg gcggtggacc
     3541 tggcggtccc ggcggcggcg gccgcggcgg ttttggcgga ccgggcggtg gtttcggcgg
     3601 tggcggcggc ggaaatggcc gctacaacct gacgttctcg gtgaacttcc agaatctgct
     3661 gaaccacgtg aacctgaaca acccggtggg caatctcggt tcggcgttgt ttggacaatc
     3721 cacggcgacc gcgggcgttt ttggtggatt tggcggtggc ggcaatgccg cttacaaccg
     3781 ccgcatcgat gcgcagattc gcttcagttt ttaattagcg ccgctgccgt caatcgcagg
     3841 ccgcatctcg cccacaaact gatccgagtt ctttatgctc gagaggacga tctcgatcgc
     3901 tttgtcaggg aaacctgact cgagcgtgaa ggtgtaaccg gtaaagacgt cgcccgaatc
     3961 atcggctccc caaaacagga acgtcgaatc gtttagctgt gcgagcttgc gtagcagttg
     4021 cgtgggattg cgcgctttgt cgatgttgat gtacgtgcct ttgtagtgcg gaaagacgcg
     4081 gaagccgatc gtgtccttcg tcgtcacgct aatcacaatc tcaaactgct ccacgttctt
     4141 cagaccgtct ttcatcacgc ccgtgaatac aaattgagac ttcgagctcg gcttgaaggt
     4201 gacgttcatg tcgggtccga cgcgttgcag gagcgcgttg aggcgttcgc gtgttttgtc
     4261 gcgggcggcg tcagcttcct gggaaaaaac ggcgggagcg aaggctaaga ttgcggcgca
     4321 aaaaagaaaa cgaatcacat gagggatctt catcgggttc tccttcttca aaaccggttc
     4381 agttttgagt tcaagcttta gcttgccgtt cgcgcagcag cctaaaggct gaactcagaa
     4441 ctaacaatca cctttaggtg aagtgggagg caatgtcaat agttttgatt cgttgtatgc
     4501 ttgggtaccg tgtttgtgca gcgctgcatc agttgtgaga atgagtttca gctcgacgag
     4561 cggatgtacg tgtgttcgcg atgcggcgat ctgctcgata ttgagagaag cgagccgctg
     4621 cggccgcaaa gggtcgagga attgcccgcg ttgtggctgg cgcgattgca gtcgcgtgag
     4681 gcgcgcgatc gcagtggcgt gtggcggttt cgtgaggtgc tgccgtttgg agctgatgaa
     4741 gctgttgttt cgctcggcga gggcaacacg ccgctttacg acgcgccacg atctgctgaa
     4801 tattgtggcc ttgcttcgtt aagactcaaa caccagggca acaatccgac gggttccttc
     4861 aaagacacgg gcatgaccgt cgcggtcacg caggcgctga agctgggcat gcgtctggtt
     4921 gcgtgtgcga gcaccggcaa caccgcggcg agcctggctg cgtatgctgc gcgtgcgcga
     4981 atgtcttgcg cgatcctcgt gcctgaaggt caggtgagcg acgcgaaact cgcgcaggcg
     5041 ctcgattacg gcgcgaaggt gctggagatc gagggaaact tcgacgtctg catgcgcgtg
     5101 attcaggagt tggctgagca gagctcgttg tatctcgtta actcgatcaa tccgtttcgc
     5161 attgaaggcc agaagacggt ggcgtttgag ctggcggaac agcttgaatg gaatgtgccg
     5221 gatcatttgg tcgtgccggg tgggaacttg gggaatagtt cggcgttggg taagggcttt
     5281 cgtgagttgt tcggccacgg atttacacgg aaacagccac ggatcagtgt gattcaggct
     5341 gaaggcgcgg cgccgtttgc gcgttttgcg cgtgatgttc gttctgggtt cgttaacgaa
     5401 aaacagccgc acacgctggc ttcggcgatc aagattggcg cgcctgtttc gtggaaaaaa
     5461 tcgtggcgcg ctgtgagtga gaccggtggc cacgtgatca cggttagcga acaggagatt
     5521 gcggatgcga aagcgatgat cgggcgcgac ggtgttggtt gcgaaccggc gtcggcgact
     5581 actgtcgcgg gaattcgcag gcttgttgct gacggcgcg
//
LOCUS       DASWTX010000239         8841 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_414444, whole genome shotgun sequence.
ACCESSION   DASWTX010000239 DASWTX010000000
VERSION     DASWTX010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8841)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8841
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_414444"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..288
                     /locus_tag="VGD38_03710"
     CDS             <1..288
                     /locus_tag="VGD38_03710"
                     /inference="COORDINATES: protein motif:HMM:NF015922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase C-terminal beta-propeller
                     domain-containing protein"
                     /protein_id="HEY0727150.1"
                     /translation="TPITTYRLQSRGGKGVINMKTTDKTGKVVAVFPVEDESEIMIIT
                     QQGKLIRLEAADIRKTGRSAQGVRLIKTDAGDKVTSASLVEADEETEEAPA"
     gene            complement(415..1086)
                     /locus_tag="VGD38_03715"
     CDS             complement(415..1086)
                     /locus_tag="VGD38_03715"
                     /inference="COORDINATES: protein motif:HMM:NF014448.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HEY0727151.1"
                     /translation="MITIRVLFFGAARDVVNKNPFPLTLDGGPATVSDAFHQLVQQFS
                     GLERFGRSLLFAVNQEYATPETELKDNDELAIFPPVSGGSHDFFELTTEPIDVGSIAR
                     RVVLPECGAIVSLDGFTREWTKGRRTKYLVYEAYARMAISEMQRLGAEAHNRFPIAHI
                     GIVHRTGRLEIGETSVVISVSAPHRKAAFEACEWAIKELKRTVPIWKKEVYEDGEEWV
                     EESSA"
     gene            complement(1083..1784)
                     /locus_tag="VGD38_03720"
     CDS             complement(1083..1784)
                     /locus_tag="VGD38_03720"
                     /inference="COORDINATES: protein motif:HMM:NF014269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HEY0727152.1"
                     /translation="MSEAMDKVRGINELPVFPLPVVLFPGVPLPLHIFEPRYRQMLLD
                     VSEDNKLFGVSYFDPSVQTNEVPPAGHVGCVAEVTETHVFPDGRSNILTVGVVRYRID
                     SYVERGDPYLVAKLSYFEDDDEDETALVGLTKDVAEAFTRIAQAVRTINDERTNLPDI
                     SDTEPQRLSFLVAAAMEIEADVKQELLELRSTFERLERLRALLSVAVKGYEERARIHE
                     LAKGNGHGGKRIEIE"
     gene            complement(1941..2345)
                     /locus_tag="VGD38_03725"
     CDS             complement(1941..2345)
                     /locus_tag="VGD38_03725"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0727153.1"
                     /translation="MKPRILIVDDDSVITQQLYWTLCDEYDVVTANDMQTAIRRATFY
                     KPDVSILDLQMPPEKNSPASGIRLLEFIKGHLTQSKVLIMSSNSESDVREACMAAGAD
                     GFFAKPFNIEDLLASICRLIPVHRLKLFAHIL"
     gene            complement(2490..3548)
                     /locus_tag="VGD38_03730"
     CDS             complement(2490..3548)
                     /locus_tag="VGD38_03730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727154.1"
                     /translation="MTYAQNQKPLTNKEVVTLLYQLERNPETRDEVVEEIRKRGIGFP
                     LTNGMRSLVATKSGNDALLRRTLEEAERRRVNPAASTLPSETEGNELLERTRNVTLMA
                     AGAMPDFLVKQIIKRSVAYGTTANWIPQDNLTLAVGYRANQGEEYRVLTVNGIPPAEQ
                     VQAGSDYRKYIPKGATSSGVEYISAMADIFKPETKTEFRMVDTDQIQNRRTVVYEYVV
                     KRENSQLTLTVGDTGVRAVVGSRGRMWIDRELDRVLRFEQIATEVPPDFPITAASSTI
                     DYDWVSINERKYLLPTHSLILMTTNQGKFVLQSKNDVRFRSYQKFGAELKVIDEVGED
                     DEPVEETPKPPKPIKPPQ"
     gene            complement(3636..4766)
                     /gene="argE"
                     /locus_tag="VGD38_03735"
     CDS             complement(3636..4766)
                     /gene="argE"
                     /locus_tag="VGD38_03735"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR01892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008777 - acetylornithine deacetylase
                     activity [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HEY0727155.1"
                     /translation="MTPQQTLSDLVRIDSVSSRSNAEIVEYLERRCEALKLKTQRFSY
                     QDEQGLEKINLIALAGTDFSQNTNVEVALVGHTDTVPYDPNWAEATNLTERDGKLYGR
                     GSCDTKGFIAAALTAVETLDPSRLNKPLALIFTADEEIGLRGAKHLAQIKPLRARYSI
                     VGEPTSLQPIRAGKGYSLAEVVVKGREAHSAYPALGASAVFRAARLINRLETLAEQLK
                     DDQHPAFDPPYTTLNVGVIHGGSAKNVLAGECRFTLEWRPIPTQPSDHLLHLFNLAIS
                     EEKRSDPDFVCEVDASRADTGFETPRESPLIKLLEKETGLESGTVAFGTEGAQMQALG
                     SDPVVIGPGDIREAHRTGEFVPVAELERCTEILKHAVEQLCG"
     gene            complement(4763..6139)
                     /locus_tag="VGD38_03740"
     CDS             complement(4763..6139)
                     /locus_tag="VGD38_03740"
                     /EC_number="3.5.3.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR02022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formimidoylglutamate deiminase"
                     /protein_id="HEY0727156.1"
                     /translation="MSQAWLPDSIYHNGRFESDVVLVFEQKVLRLEPHDKVKNPIRLK
                     NRALLPGLVNAHSHAFQRVIRGRTERRSEHTSDSFWTWREQMYAAANRLSPEDIYAAS
                     RMAFLEMALSGITAVGEFHYIHRAPDGSRYSDPNLLEREVIRAARDVGVRIALLRVAY
                     ARAGYQREPNPQQARFIEDSPESFLKSLEELLTAPELKDGMAWAGVAPHSVRAVPLEY
                     LKKIVAYANERGLMVHMHVAEQTAEVEACIEEYGRSPVALLDTEGLLSERFTAVHAIH
                     VTPKAIGALARAQANVCACPTTERNLGDGVVPVDAYFNAGVPVSLGTDSQIQIDLLED
                     ARELEYHLRLQRTARNILAPNDETDESALARRLFACATTNGATSIGLDGGSLEPGAPA
                     DFFTIDLDDPSIAGSTIDNLLANVVFSLSRTAIKDVVVGGKGIVVDGRHAQQDAIVQQ
                     FSELQKRL"
     gene            complement(6136..6915)
                     /locus_tag="VGD38_03745"
     CDS             complement(6136..6915)
                     /locus_tag="VGD38_03745"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: protein motif:HMM:TIGR00571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009007 - site-specific
                     DNA-methyltransferase (adenine-specific) activity
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HEY0727157.1"
                     /translation="MSVSLKPPLKWAGGKRWLVPHLKPIWDRYSDRRYVEPFCGGLAV
                     VLGLQPERALLNDINPHLINFYRHLQKGLQPRIDMRYNKRLFYKHRERFNKLIQNGGV
                     KSSEAAELFYYLNRTCFNGLCRFNKSGEFNVPFGTYTRINYATDFGEYAEAFKQWEFT
                     NVDVEAVGIEATDFIYADPPYDTEFTTYSPGGFSWDDQRRAAELLAKHPGPVVISNQA
                     TPRIVELYEGLGFELSYLAGPRRISCTGDRTAAREVLAIKE"
     gene            complement(6906..8105)
                     /locus_tag="VGD38_03750"
     CDS             complement(6906..8105)
                     /locus_tag="VGD38_03750"
                     /inference="COORDINATES: protein motif:HMM:NF026257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEY0727158.1"
                     /translation="MRKVVSRPEHEVLFCAARRELDAEQQAKLRQLLKQNLDWNYLFT
                     TANTHGLVPLLQKHLHSLNSAPIPIDFRSRVRRQSLANAQNVLHLVGKQLKLFRLFND
                     SHIAVAIFKGSALAQSAYGDFSLRQAGDIDVLISRGDFDRARLLLESLGYQMTPQLTP
                     AQLSSHLASHCEIQFVRDDWFTVVDLHWALAPKSFVFKMDTDELLSRLQPVTIAGAEI
                     ETLATEDLIVYLPMHGAKHLWRALEWISSLGELIRSEETIAWDKVIKRAEKAYATRML
                     ALGLRLSESLSNLNVPAEVWRAVDGDESSKRMAQQTLAEIFNVSTAAVSSETNLYNLK
                     IMDRKRDAFISALRAIFVPTLSDWHALHLPPSLHSLYYAYRPLRLSKAYSSALWRKLG
                     SRGAACL"
     gene            complement(8089..>8841)
                     /locus_tag="VGD38_03755"
     CDS             complement(8089..>8841)
                     /locus_tag="VGD38_03755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727159.1"
                     /translation="EAAVVNGFSDRVEFFQSVSTEVTLPEPASIIISDLRGVLPWFQK
                     HIPSIVDARQRLLAPGGVLIPRRDTLWAALVEAPGQYEEIVGPWRKDLFGVDLSAGLS
                     RITNTWRKTRIEASELLTESLCWTTLDYESVSGADVEAEISWRVARAGIAHGVAVWFD
                     TELGDGIGFSNRPGAPDLIYGNGFFPFPRPVQVREGERVTVRLRADLVKDDYVWTWTG
                     DFRDQGIRFRQSTFYGVALSAEQLRKKHAQGS"
BASE COUNT         1880 a         2526 c         2515 g         1920 t
ORIGIN      
        1 acgccgatta cgacttaccg cttgcagtcg cgtggtggca aaggcgtcat caacatgaag
       61 acgactgaca agaccggcaa ggtcgtcgcc gtatttccgg ttgaagacga gtccgaaatc
      121 atgatcatca cgcagcaggg caaactgatt cgcctcgaag cggccgacat tcgcaagacc
      181 ggccgcagcg cccagggcgt gcgcctcatc aagaccgacg cgggcgacaa agtaacaagc
      241 gcctccctgg tcgaagccga cgaggagaca gaagaagccc ccgcttaggc tcagcgctca
      301 tctttcgagg attgacgacc gaggaccgcg acctacgcta ctttgacccc tcgatcacgt
      361 agcgcacggc gcgggcctcg gtcgttcaat cccaaaaaaa atgaagcgtc gcccttaagc
      421 ggatgattcc tccacccact cttcgccatc ttcgtaaact tctttcttcc agatcggaac
      481 ggtgcgtttc aattccttga tggcccactc gcaggcttcg aaggccgctt tgcggtgggg
      541 ggcgctgacg gagatgacga cgctggtttc gccgatttcg aggcggccgg tgcggtggac
      601 gatgccgatg tgggcgatgg ggaagcggtt gtgggcttcc gcgccgaggc gttgcatttc
      661 tgagatggcc atacgagcgt aggcttcgta gaccagatac tttgtgcggc ggcctttggt
      721 ccattcgcgc gtgaagccgt cgagcgagac tattgcgccg cactcgggta ggactacgcg
      781 gcgcgcgatg gaaccgacgt cgatcggttc agtcgtcagc tcgaaaaaat cgtgactgcc
      841 tccgctcacg ggtggaaaga tcgccagctc gtcgttgtct ttcaactctg tctccggtgt
      901 tgcgtactcc tggttcactg cgaacaacag cgagcggccg aagcgctcga gcccgctgaa
      961 ttgttggacg agttggtgaa aggcgtccga gacagttgcg gggccgccgt cgagcgtgag
     1021 cgggaaggga tttttattga cgacatcgcg agcggcgccg aaaaataaaa cccggatagt
     1081 tatcattcga tttcgatcct tttgccgccg tgcccgtttc ctttagcgag ttcgtggata
     1141 cgtgcgcgct cttcgtaacc tttcaccgcc accgatagca gtgcccgcag tcgttcgaga
     1201 cgttcgaagg ttgagcgcag ttccagcagc tcctgcttca cgtcggcctc gatttccatc
     1261 gcggcggcca cgagaaatga aagccgttgc ggctcggtgt cggagatgtc agggaggttc
     1321 gtgcgttcgt cgttgatcgt acgcaccgct tgcgcgatcc gcgtaaacgc ttccgcgacg
     1381 tccttcgtta gaccaacaag cgcagtttca tcttcatcgt cgtcttcgaa ataactgagc
     1441 ttcgccacga gatacggatc gccgcgttcg acgtacgagt cgatccgata ccgaaccaca
     1501 cccaccgtaa gtatgttgga ccgtccatcg ggaaagacgt gcgtctccgt tacttcggca
     1561 acacaaccaa cgtggcccgc cggtggaact tcattcgttt gcactgaagg atcgaagtaa
     1621 gaaaccccga acagtttatt gtcctcgctg acatcgagga gcatctgccg gtagcgtggt
     1681 tcgaagatgt gcagcggtaa cggcacgccg ggaaacagga ccacaggcag aggaaacacc
     1741 ggcagctcgt tgatgccgcg tactttgtcc attgcttcgc tcatcggtgc agcgattatg
     1801 gcagattaga ggatttaaaa aaatgtagcc cccgcctgcg cgtgggagac gctgcggggg
     1861 ccttcgagca caccttctga tgaagagggg tttcatctcc ggtgtttgac ggacgttcgg
     1921 tagtgggtaa cgtccggata tcaaagaatg tgtgcaaaca atttcagcct gtgaaccggt
     1981 attaatctgc aaatgctcgc gagcaggtct tcgatgttga acggcttcgc gaagaaccca
     2041 tccgcgccgg cggccatgca agcttcacgt acgtcagact cgctgtttga actcatgatc
     2101 aagaccttcg attgggtcaa atgaccttta atgaattcca gtaagcgaat cccgcttgcc
     2161 ggggagttct tttccggcgg catctgcaag tcaagtatcg aaacatccgg cttgtaaaaa
     2221 gtcgcacgac gaatagccgt ctgcatgtcg tttgcggtca cgacgtcgta ctcatcacat
     2281 aaggtccaat agagctgttg agtgatgact gaatcatcat caacaatcaa aattctcggc
     2341 ttcatccaaa caacgctcct gagtgttcgc gccctactac agagcaacgt gcgtaccact
     2401 acagatctac gcgtattttg ccgaacgagc ggtctaagtg ttcacgggag ggaacagaag
     2461 cggggaaaag gcgtctactt tcggaaacac tattgcggcg gcttgatggg tttgggtggt
     2521 tttggcgttt cttcgacggg ttcgtcgtcc tcgccaactt cgtcgatgac cttcagctcc
     2581 gcgccaaact tctggtaact gcggaagcgc acgtcgtttt tgctctgcaa cacaaacttg
     2641 ccctggttcg tggtcatcag gatcagcgag tgagtcggca gcaggtattt acgttcgttg
     2701 atcgagaccc agtcgtaatc gatcgtgctg ctcgcggccg tgatcggaaa atccggagga
     2761 acttccgtcg cgatctgttc gaaacgcagc actcgatcga gctcgcgatc gatccacatg
     2821 cggccgcgcg aaccgacaac agcgcgcacg ccggtgtcgc cgacggtcaa ggtcaactgc
     2881 gagttctcac gcttgacgac gtattcgtaa accacggtgc gccggttctg aatctgatcg
     2941 gtgtcgacca ttctgaattc agtcttcgtc tcgggtttga agatgtcggc catcgcggag
     3001 atgtattcga cgccgctcga ggtcgcgcct ttggggatgt acttccggta atcggaaccc
     3061 gcttgtacct gttcggcggg cggaattccg ttcacggtaa gaactcgata ttcctcgccc
     3121 tgatttgcgc gataaccgac cgcgagcgtc aggttgtcct gcgggatcca gttggcggtt
     3181 gtgccataag cgactgagcg tttgatgatc tgtttgacga gaaagtcagg catggcgcct
     3241 gccgccataa gcgttacgtt tcgcgtgcgt tcgagcagtt cgttgccttc ggtttcggaa
     3301 ggcagagttg aagcagcagg gttcacgcgg cggcgttcgg cttcttccaa cgtgcggcgc
     3361 aacagtgcgt cgttgccgct cttggtagcg acgagcgagc gcatgccgtt cgtgagcgga
     3421 aagccgatgc cgcgtttgcg aatctcttcg acgacttcgt cgcgagtttc gggattgcgc
     3481 tcgagttggt agaggagcgt gacgacttct ttattcgtga ggggtttttg gttctgggcg
     3541 tacgtcaccc caaaagaaaa caaaagaacc gcgactaaaa gtaccttctg gaaatacatt
     3601 gccaaattta ccgccgcaag cttaacgaaa agggttcaac cacacaattg ctcgaccgcg
     3661 tgcttcaaaa tctcggtgca ccgctccaat tccgctacgg gcacgaactc gccggtgcga
     3721 tgcgcctcgc gaatgtcgcc cggcccaatc acgaccggat cgctgccgag tgcctgcatt
     3781 tgcgcgcctt cggtgccgaa agcgacagtg ccggattcga gacccgtttc tttctcgagc
     3841 aacttgatca gcggagactc gcgcggcgtt tcgaaaccgg tatccgcgcg gctggcgtcg
     3901 acttcacaca cgaaatcggg atcgctgcgt ttctcttcac tgattgccag gttgaagaga
     3961 tgcaaaagat ggtctgacgg ttgggtggga atcggccgcc attcgagcgt gaagcggcat
     4021 tcgccggcga gaacgttctt ggcagagccg ccgtgaatca cgccgacgtt gagtgttgtg
     4081 taaggcggat cgaatgccgg atgctggtcg tctttgagtt gttcggcgag tgtttcgaga
     4141 cgattgatga gccgcgcggc gcgaaatacg gcggatgcgc cgagcgccgg atacgcgctg
     4201 tgggcctcac ggcctttcac gacgacttcg gcgagcgaat agcctttgcc ggcgcgaatc
     4261 ggttgtagcg aagtcggttc gccgacgatg ctgtagcgcg cgcgcagagg tttgatttgg
     4321 gccaggtgct ttgcgccgcg cagtccgatc tcttcgtcgg cagtgaagat cagtgcgagt
     4381 ggtttgttga gacgcgaggg atcgagtgtt tcgacagcgg taagcgcggc ggcgatgaag
     4441 cctttcgtgt cgcacgagcc gcggccgtaa agtttgccgt cgcgttcggt gaggtttgtt
     4501 gcttcggccc agtttggatc gtagggaacg gtgtcggtgt gaccgacgag cgcgacctcg
     4561 acgtttgtgt tttgtgaaaa gtcagtgccc gcgagtgcga tgagattgat cttctcgagg
     4621 ccctgttcgt cctggtaaga gaagcgttgt gttttgagtt tgagtgcttc acagcgccgc
     4681 tcgagatatt cgacgatctc cgcgtttgaa cgagaagaca cggagtcgat ccgcacgagg
     4741 tcggataagg tttgttgagg tgtcatagtc ttttttgcaa ctcactaaac tgctgaacga
     4801 tcgcgtcttg ctgcgcgtga cggccgtcga caacaatccc tttcccaccg accactacgt
     4861 ccttgatggc cgtgcgggaa agcgagaaca cgacattagc gagaagatta tctattgttg
     4921 agccggcgat agacggatcg tcgagatcga tagtgaaaaa gtctgctggc gcgccgggtt
     4981 cgagtgagcc gccgtccaaa ccgatgcttg tcgcaccgtt tgttgtggcg caggcaaata
     5041 gtcttcgagc gagcgctgat tcgtccgttt cgtcgttggg cgcgagaatg tttcgcgcgg
     5101 tgcgttgcag gcgcaagtga tactcgagct cgcgcgcgtc ttccagcaga tcgatctgaa
     5161 tctggctgtc ggtgcctaac gagaccggta cgcccgcgtt gaaatacgca tcgacgggaa
     5221 cgacaccgtc gccgagattg cgttcggtgg tcggacacgc gcagacgttc gcttgcgcgc
     5281 gtgcgagcgc accgatggct ttcggcgtca cgtgaatcgc gtggaccgca gtgaaccgtt
     5341 cgcttaacaa accttccgta tcgagcagcg cgaccggcga gcgcccatac tcttcgatac
     5401 acgcttcgac ctcggcagtc tgttcggcca cgtgcatgtg gaccatgagg ccgcgttcgt
     5461 ttgcataagc cacgatcttc ttcaagtatt cgagtggcac tgcgcgaacg ctgtgtggcg
     5521 cgacgccggc ccacgccatg ccgtctttca actccggcgc ggtaagcaat tcttccagac
     5581 tcttcaagaa actctccggc gagtcttcaa taaaacgagc ctgctgcgga ttgggttcac
     5641 gttgataacc cgcacgtgcg tacgccacgc ggagcaacgc gatgcgtacg ccaacgtcgc
     5701 gcgccgcacg gatcacctcg cgctccaaca gattgggatc gctgtagcgc gacccatcgg
     5761 gcgcgcgatg aatgtaatga aactccccaa ccgccgtaat ccctgacagc gccatctcga
     5821 gaaacgccat ccgcgacgca gcataaatgt cttccggcga aagccgattc gcagccgcat
     5881 acatctgctc gcgccacgtc caaaaactgt cgctcgtatg ttctgaacgc cgctccgtgc
     5941 gcccgcgaat cacacgttga aacgcgtgcg agtgtgcatt gacgaggccc gggagcaacg
     6001 cacggttctt gagacgaatc gggtttttaa ctttatcgtg cggctccaat ctcaaaacct
     6061 tctgctcaaa cacgaggacg acgtcagact caaagcgtcc gttgtgataa atcgaatccg
     6121 gtaaccaagc ttgactcatt ctttaatcgc caacacctcg cgcgccgcgg tgcgatcccc
     6181 ggtacaactg atccgcctcg gtcctgcaag ataactcaac tcaaacccca agccttcata
     6241 cagctcaaca atccgcggcg tcgcctggtt tgaaatcacc accggtcccg gatgcttcgc
     6301 caacaactcc gccgcgcgcc tctgatcatc ccacgaaaac ccgcccgggc tgtaagtcgt
     6361 gaactcagta tcataaggcg gatcagcata gatgaaatcc gtggcttcaa tccccaccgc
     6421 ttctacgtca acattggtga actcccactg tttgaacgcc tccgcatact cgccaaagtc
     6481 cgttgcgtag ttgatcctcg tgtacgtgcc aaacggcaca ttaaactcgc cgcttttgtt
     6541 gaaacggcaa aggccgttga agcacgtgcg attgagatag tagaacaact cggccgcttc
     6601 gctgctcttc acgccgccat tctgaatcaa cttattgaaa cgctcgcgat gtttgtagaa
     6661 gagacgcttg ttgtagcgca tatcgatccg cggttgcagg cctttttgca gatggcgata
     6721 gaaattgatg aggtgcggat tgatgtcgtt gagcaacgcg cgttctggtt gcaatccgag
     6781 aacaacggca agcccgccgc aaaacggttc cacataacgg cgatcggaat aacgatccca
     6841 aatcggtttc agatgcggca cgagccagcg cttgccgccg gcccatttca acggcggctt
     6901 gagactcaca gacatgccgc gcctcgcgaa cccagttttc gccacagcgc cgagctgtaa
     6961 gctttcgaga gccgcagcgg gcggtaggcg tagtagagcg agtgcaggga aggcgggaga
     7021 tgaagggcgt gccagtcaga aagtgtgggg acgaagatcg ctcgcagggc ggagatgaag
     7081 gcgtcgcgtt tgcggtccat gatcttgagg ttgtagaggt ttgtttcgct ggacaccgcg
     7141 gcggttgaga cgttgaagat ttccgcgagt gtctgttgcg ccattcgttt gctcgactcg
     7201 tcaccgtcca ccgcgcgcca cacttcagcg ggaacgttta agtttgaaag actctccgat
     7261 aaacgcaagc ccaacgccaa catccgtgtc gcgtatgcct tctcggcgcg cttgataacc
     7321 ttgtcccacg cgatcgtttc ttccgagcgt atcagctcac cgagcgaact gatccattcg
     7381 agtgcgcgcc agaggtgttt cgcgccatgc atcggcaggt aaacgatcaa gtcttcagtc
     7441 gcgagtgttt cgatctcggc gccggcgatc gtgaccggtt gcaggcgcga cagcagttcg
     7501 tccgtgtcca ttttaaagac gaagctcttc ggcgccagtg cccagtgaag atcgacgacg
     7561 gtgaaccagt cgtcgcgcac aaactgtatc tcacaatgcg aggcgaggtg cgaggatagt
     7621 tgtgccgggg ttaactgagg cgtcatttga tagccgagcg attccagcaa cagccgggcg
     7681 cgatcgaaat cgccgcgtga aatcagcacg tcgatgtcgc ccgcctggcg taaagagaag
     7741 tcgccgtaag ccgactgcgc gagcgcggag cctttgaaaa tggcgactgc aatgtggctg
     7801 tcgttgaaga gacgaaacag tttcaactgt tttccaacga ggtgcaggac gttctgcgca
     7861 ttggcgaggg attggcgcct cacgcgtgag cgaaagtcga tggggattgg agccgagttc
     7921 agcgagtgaa ggtgcttttg cagcagcgga accaggccgt gagtgttggc tgttgtgaac
     7981 aggtagttcc agtcaaggtt ttgttttagc agttggcgca gctttgcctg ttgctccgcg
     8041 tccaactcac gccgagccgc acaaaataaa acctcgtgct ccggtctgct aactaccttg
     8101 cgcatgtttc ttccgcaact gctccgccga gagcgccaca ccataaaacg tcgactgccg
     8161 aaatcggatt ccttgatccc taaaatcccc ggtccatgtc caaacgtaat cgtccttcac
     8221 caggtctgcc cgaagtcgca ctgtgacgcg ctcgccttca cgaacctgaa ccggccgcgg
     8281 aaacggaaag aacccattcc cataaatcaa atccggcgca cccggccgat tcgagaaccc
     8341 aattccatct cccagctccg tatcaaacca aacagcgact ccatgcgcga tccccgcacg
     8401 cgcaacacgc cacgaaatct ccgcctccac atcagcaccc gaaaccgact cataatccaa
     8461 cgtggtccaa cataagcttt cagtcaacaa ctcacttgct tcaatacgcg tcttccgcca
     8521 cgtgttcgta atcctcgaca gacccgcaga cagatccaca ccaaacaaat cttttcgcca
     8581 cggtccaaca atctcctcat actgcccagg cgcttcgacg agcgccgccc acaacgtgtc
     8641 gcgccgcgga atcaacacgc cacccggcgc gagcagccgc tgccgcgcgt cgacgatcga
     8701 cggaatatgc ttctgaaacc acggcaacac gccgcgcaaa tccgagatga ttatcgacgc
     8761 cggctccggc agcgtgactt ccgtcgacac actctgaaag aactcaactc gatcgctaaa
     8821 cccattcacc accgccgctt c
//
LOCUS       DASWTX010000240         2645 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_47527, whole genome shotgun sequence.
ACCESSION   DASWTX010000240 DASWTX010000000
VERSION     DASWTX010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2645
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47527"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1846)
                     /locus_tag="VGD38_03760"
     CDS             complement(<1..1846)
                     /locus_tag="VGD38_03760"
                     /inference="COORDINATES: protein motif:HMM:NF014896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEY0727160.1"
                     /translation="MRNKYIHLLMVVFCVSSMLSNNGALRAQSNGGSAPGKAPMAEKK
                     TKTTNIHGDTLVDDYFWLREKNNPAVIEHLKAEEAYTEQVMKPTAALQEKIYKEMLSH
                     IKQTDTNVPYRWGDYFYYSRTEEGKQYPIYCRKRGNLNAPEEVVIDQNELAKGQKFMS
                     IGLFVPSDDGNLLAYSTDNTGYRQYTLQIKNLKTGELLPERIERVNYLAWATDNKTFF
                     YVTEDAVTKRSDKFFRHVLGTDKNDLVYEEKDELFDLGAGRSRDKAVILLHSFSKTST
                     EALYLPANEPNASLKVILPRQAEHEYDVDHRGGLFYIRTNKGAKNFRVVTAPVNDPSE
                     KNWKEFVEHRPAVKVEGVDLFAEHAVLSEWENGLQQLEVINFKTNKRNNIKFPEPVYS
                     AGLTGNREYNTSVVRYVYNSLVTPNSYFDYDMNTGKSTLLKQQEVPGGFDRTNYKSER
                     VFATASDGTKIPMSMVYRKGVKLDGSAPLLLYGYGSYGYSIPPTFDSNRLSLLDRGVI
                     FVIGHIRGGSEMGEEWRQAGRMMNKMNTFTDFIACAEALVKMKYTSSDRLVIEGGSAG
                     GLLMGVVSNLRPDLFKAVVSHVPFVDVLNTMLDATLPLTTSEYIEWGNP"
     gene            complement(1938..2159)
                     /locus_tag="VGD38_03765"
     CDS             complement(1938..2159)
                     /locus_tag="VGD38_03765"
                     /inference="COORDINATES: protein motif:HMM:NF041212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Uxx-star family glutaredoxin-like
                     (seleno)protein"
                     /protein_id="HEY0727161.1"
                     /translation="MALVIYTKPGCPYCQQAREYYNDKGIPFIDYDAQNDKARREEMF
                     SYSGGDPTVPCIVEDGKYIGSGWGNPPRG"
     gene            2223..2564
                     /locus_tag="VGD38_03770"
     CDS             2223..2564
                     /locus_tag="VGD38_03770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEY0727162.1"
                     /translation="MSEQSAASNGLDDSAADLLDPYEKLVSIEIVGRKVSVPEKNRLL
                     RCFQYLSINTISYGDFCWNGECTNCQIWYHLNGQSEQSDRPALSCRLECEDGMVITKL
                     SRFIELEGITK"
BASE COUNT          544 a          734 c          709 g          658 t
ORIGIN      
        1 tcggattgcc ccactcgatg tattcactcg ttgtcagcgg caacgtcgcg tcgagcatcg
       61 tgttgagcac gtcgacaaac ggcacgtgcg acacgaccgc tttgaacagg tccggccgca
      121 ggttgcttac cacgcccatc aacaaaccac ccgcgctgcc accttcaatc accagccgat
      181 cgctcgacgt gtacttcatc ttcacgagcg cttccgcgca ggcgatgaag tcggtgaacg
      241 tgttcatctt gttcatcatg cggccggcct ggcgccattc ctcgcccatc tcgctcccgc
      301 cgcgaatgtg cccgatcaca aagatcacac cgcgatcgag caggctcaga cgattcgaat
      361 cgaacgtcgg cgggatcgag tagccgtacg aaccataccc ataaagcagc aacggcgcgg
      421 aaccgtcgag cttgacgcct ttgcgataga ccatcgacat cgggatcttc gtgccgtcgg
      481 acgcggtcgc aaacacgcgt tccgatttgt agttcgtacg atcgaaaccg cccggcactt
      541 cctgttgctt taacagcgtg gacttgccgg tgttcatgtc gtagtcaaaa tacgagttcg
      601 gtgttacgag cgagttgtag acgtaacgaa caaccgacgt gttgtactcg cgattgcctg
      661 tcaaacccgc ggagtaaacc ggttcgggaa acttgatgtt gttacgtttg ttcgtcttga
      721 aattgatgac ttcgagctgt tgcagtccgt tttcccactc ggacaacacc gcgtgttccg
      781 cgaacagatc cacgccctca actttcaccg ccggacgatg ctccacgaac tctttccagt
      841 ttttctcaga cggatcgttt acgggcgccg tcacgacgcg gaagtttttc gcgcctttgt
      901 tcgtgcgaat gtagaaaaga ccgccacgat gatcgacgtc gtactcgtgt tccgcctgcc
      961 gcggcagaat cactttcaac gacgcattcg gctcgtttgc cggcaggtaa agagcctcgg
     1021 tcgacgtttt gctgaatgag tgaagcagga tcactgcctt gtcgcgcgag cgcccggcgc
     1081 cgagatcaaa cagctcgtcc ttctcttcgt aaacgagatc gtttttgtca gtgccgagaa
     1141 cgtgacggaa aaacttgtcg ctgcgtttcg tcaccgcatc ttcagtcacg tagaagaacg
     1201 ttttgttgtc agtggcccac gcgagatagt tcacgcgttc gatacgctcg ggcagcagtt
     1261 cgccggtttt gagatttttg atttgcagcg tgtactggcg atagccggtg ttgtcagtgc
     1321 tgtaggcgag aagatttccg tcgtcactcg gcacgaacaa cccgatgctc atgaacttct
     1381 gccctttggc gagctcgttt tgatcgatca cgacctcttc gggcgcgttg aggttgccgc
     1441 gtttgcgaca gtaaatcgga tactgtttac cttcctcggt gcggctgtag tagaagtaat
     1501 cgccccagcg atacggcacg ttcgtgtccg tctgcttgat gtggctgagc atctctttat
     1561 agatcttttc ctgcagcgcg gcggtcggtt tcatcacctg ttcggtgtac gcctcttcag
     1621 ccttcagatg ctcgatcacc gcgggattat ttttctcacg gagccagaaa tagtcgtcga
     1681 ccagtgtgtc gccgtgaatg tttgtcgtct tggtcttctt ctctgccatt ggtgctttac
     1741 ccggcgcgga gcccccgttt gattgtgctc tcaatgcgcc gttgtttgaa agcatggatg
     1801 atacacaaaa cacgaccatc aaaaggtgaa tgtatttgtt gcgcatgatg caccttcctc
     1861 atcgagtcag attgtgagag ggagactggt tttttgtttt cggaagccgg cgcacggccg
     1921 gcttagtcgt gaaccgttca accacgtggc gggtttcccc agccggaacc tatgtattta
     1981 ccgtcttcca ctatgcacgg gactgtcgga tcgccgcccg aataagagaa catctcttcg
     2041 cggcgcgcct tatcgttttg cgcgtcgtaa tcgatgaagg gaattccctt gtcgttgtaa
     2101 tactcgcgcg cttgctggca gtatggacag cccggcttgg tatagatgac taaggccaaa
     2161 tcgttaaccc ccggcgtttt agttacaaat taacgcaggg agcgattata ctgccgctgc
     2221 ctatgagtga acaaagcgca gccagcaacg ggctggacga ctcggctgcc gatttgctgg
     2281 atccttacga gaagcttgtc agtatcgaaa tcgtgggcag gaaagtcagc gtgccggaga
     2341 agaaccggtt gctgcgctgt tttcagtacc tttcgatcaa caccatctct tacggcgact
     2401 tctgctggaa cggcgagtgt accaattgcc agatctggta tcacctcaac gggcagagcg
     2461 agcagagcga ccgtcccgcg ctctcgtgcc ggctcgagtg tgaagacggc atggtgatca
     2521 cgaagctcag ccgctttatt gagctcgaag gaattacgaa ataattaata cttcggtacg
     2581 ctcggatcga cttcgtcaga ccaggcgaga attccaccct tcaaattggc cagcttgccg
     2641 gtgaa
//
LOCUS       DASWTX010000241         3831 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_307340, whole genome shotgun sequence.
ACCESSION   DASWTX010000241 DASWTX010000000
VERSION     DASWTX010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3831)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3831)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3831
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307340"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..813
                     /locus_tag="VGD38_03775"
     CDS             <1..813
                     /locus_tag="VGD38_03775"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoamide acetyltransferase family
                     protein"
                     /protein_id="HEY0727163.1"
                     /translation="FIESGAAPAPAAPQRAAAPAPAPTQEAVAPPPLRPQVGDRVEQM
                     SVIRKKIAEHMVLSRRTSAHVTTVYEIDMTRIARLRDQHRDAFYERTGTKLTFMPFIF
                     EAVNKGLRKFPIFNAQVNGDQIIYKQDINLGMAVALDWGLIVPVIKRADDLSISGLAR
                     AANDLADRARTKQLKPDEVTGGTFTITNPGVFGGLFGTPIINQPQLAILGVGKIEKRP
                     KVMTNADGDDFLAIRWMSYFALSFDHRVIDGADAERFLAFVKDQLESGDFSV"
     gene            1031..2050
                     /locus_tag="VGD38_03780"
     CDS             1031..2050
                     /locus_tag="VGD38_03780"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEY0727164.1"
                     /translation="MVFTKHKMFAPAVLITCLLVFSASPILAQDTTNPAGSRTVTSGQ
                     KMKLKGVVTRRDADTFTVRDMNGVDTVVRLDDRTSVKTKGGFLRGGTNYAQTSILRGL
                     NVEVEGRGNASGELAAEKIRFNESDMRVARAVESRAQPLEERADTTENKLSQVEANAQ
                     RLSGQLEELAAVSNAARGGAKAAQATADAAVAGVNATNERISALDDYQPQDTAAVNFR
                     SGSAVLSTDAKATLDSIASKAMNAKGYVLEVSGYADSRGSVNLNRQLSQRRADAVIRY
                     LVENHSIPLRRIITPFGYGEMNPVAENETRDGRAQNRRVEIKLLVNKGLTAPSPTMNP
                     GTSGN"
     gene            2130..3290
                     /locus_tag="VGD38_03785"
     CDS             2130..3290
                     /locus_tag="VGD38_03785"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0727165.1"
                     /translation="MQDFEGVTMTSEVKRKFWRPAFLFGVLALFLFVSLSATAVQAQS
                     VKDLPPPPPAWKAKPTPTPKPPEDEVLEVVRVSSNLVMVPVSVTDSTGNAVQGLTKTD
                     FRLVEEGKQQEITDIGDPEQVPLSIALLFDVSSSVSQKGFFVSQQNAAASFLKLVMKP
                     TDKAAIFTITDKPTMVQPLSSAEASAAKMLTIPAATTPVPTAFYDTVIAAAKYLTASA
                     PSNHRRVIVVLSDGDDNFSEAIRELSIAEARAQQDGKTTFASTRAGLQARHRRAVEGV
                     QQAVQKADVIFYSVNPGGPSVKLNQISMRAELGMESIAATTGGTAFVPESDKDLDRVF
                     RQVAAELRGQYLLQYYANQEAPPNQFRRIEVQVPARGDVRVRARQGYYPKAK"
     gene            complement(3354..>3831)
                     /locus_tag="VGD38_03790"
     CDS             complement(3354..>3831)
                     /locus_tag="VGD38_03790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727166.1"
                     /translation="IAPAALGQTRRRSSRTPPAQSSAQKVAAARTAGATKVAEQIKLM
                     SKFIYLLGGVANGIATVDEAVKKNEASPAIVQANQQSKAVVRKGFQDFRESLDRLETE
                     FRSQPELQPFYIKLAGSAAGAAKAEELAAAGQYDAGGRTLLTVINRLADVLVVMRQ"
BASE COUNT          824 a         1087 c         1122 g          798 t
ORIGIN      
        1 tttatcgaat caggagctgc acccgcaccc gctgcacctc aacgtgccgc cgctcctgct
       61 ccagccccca cgcaagaggc tgtcgcgcca ccaccactga gaccacaagt cggcgatcgc
      121 gtcgagcaga tgagcgtgat acgcaagaag atcgcggagc acatggtcct atcgcgacgc
      181 acttcagcgc acgtcaccac ggtttacgag atcgacatga cgcgcatcgc acgactgcgc
      241 gaccagcatc gcgatgcgtt ctacgaacgg actgggacca agctcacgtt catgccgttt
      301 attttcgaag ctgtgaacaa aggtttgcga aagtttccca tctttaacgc acaggtaaac
      361 ggcgatcaga tcatttacaa acaggacatc aatctcggaa tggccgtggc cctcgattgg
      421 ggcctgatcg ttcccgtgat caaacgcgcg gacgacctga gcatttccgg tctcgcacgc
      481 gcggccaacg accttgccga tcgggccagg accaagcagt tgaagccgga tgaagtcacc
      541 ggcggcacgt ttaccatcac caaccccggc gtctttggtg gtctattcgg cacgccgatc
      601 atcaaccagc cccaattggc gattctgggc gtcggaaaga tcgaaaaacg acccaaagtt
      661 atgacaaatg cggacggcga cgactttctc gccattcgct ggatgtccta cttcgctttg
      721 agcttcgatc accgtgtaat cgacggcgcg gacgcggaac gcttcctcgc ttttgtgaag
      781 gaccagttgg aatcaggtga tttttccgtg tagttttcgc gagatctgga gtacaaagtg
      841 gtaagcttca ttgcgataaa gtggtgattc gatgaagaat agggcagcct attgacttag
      901 ttccttgtaa gttttaagag atgtcatccg caaaatttga cgagcgggag gcgagtggcg
      961 agaactcgcc aacttgatgc ggcgcgttag acggcgcgct gagacagcaa agcgacaagg
     1021 agataaatcg atggtattca ctaaacataa aatgtttgcc ccggcagtgt taattacctg
     1081 cctattagtt ttctcagcct ccccaattct ggctcaagat acaaccaacc cggccggttc
     1141 gcgcacagta accagcggcc agaagatgaa gctcaaaggt gtggtcaccc gtcgtgacgc
     1201 cgacactttc acagtgcgcg acatgaacgg tgtggatacg gtggtgcgcc tggatgatag
     1261 gaccagcgtg aagactaaag gcggattcct tcgtggcggc accaactatg cccagaccag
     1321 catcctgcgc ggcttgaacg tcgaggttga gggacgcggc aatgcttccg gtgagttggc
     1381 tgcggagaaa atcaggttca atgaatccga catgcgtgtt gcccgtgcgg ttgaatcgcg
     1441 cgcgcagccg ctcgaagaaa gagctgacac caccgaaaac aaactcagcc aggttgaagc
     1501 caacgctcag cgcctgtcgg gccagttgga agagctagcg gctgtttcga acgcggcacg
     1561 tggcggcgcc aaggctgcgc aagcgacggc tgatgcggcg gttgccggcg tcaacgccac
     1621 caacgagcgc atctcggctc tcgacgatta ccagccgcag gacactgctg ccgtgaactt
     1681 ccgttccggc agtgcagtgc tttcgaccga cgccaaggcc acgcttgaca gcattgccag
     1741 caaggcgatg aatgccaagg gctacgtcct cgaagtttcc ggctatgcgg attcgcgagg
     1801 cagcgtcaat ctcaaccggc aactgagcca gcgtcgtgct gacgccgtca tccgttacct
     1861 cgttgagaac cacagcattc cgctgcgccg gatcatcacg ccgtttggtt atggcgaaat
     1921 gaatccagtt gctgagaatg agacccgtga cggtcgtgcg cagaatcgcc gcgttgagat
     1981 caagctgctt gtcaacaagg gcctgaccgc tccttcgccg acgatgaacc ccggaacctc
     2041 cggtaactaa cttctaacgc ttctgtggag atgcaccttt gggtgcaact ccacggaggc
     2101 gacggggcac caaagagtcg tggatcatca tgcaagactt tgagggtgtc acgatgactt
     2161 cagaggttaa gagaaaattt tggcgtccgg cattcctgtt cggagtgctg gcgctttttc
     2221 ttttcgtatc tctttccgcg acggcagttc aggcgcagag cgtcaaggac ttaccgccac
     2281 cgccacctgc gtggaaagcc aaacccactc ctacacccaa gccgcccgaa gatgaagtgc
     2341 tcgaggttgt gcgagtctct tcaaacctcg tgatggtgcc cgtttcggtg actgactcga
     2401 cgggcaacgc cgttcaggga ctgacgaaaa ctgatttccg tctggttgaa gaagggaagc
     2461 aacaggagat caccgatatc ggcgatcccg agcaggttcc gctgtcgatt gccttgctgt
     2521 ttgacgtttc gagcagcgtg agtcagaagg gtttctttgt ctcgcaacag aatgcggcgg
     2581 cgtcgttttt gaagctcgtg atgaagccta cggacaaggc tgcgatcttc acgatcactg
     2641 acaagccgac aatggttcag ccgctttctt ccgcggaagc gtcggcggcg aagatgttga
     2701 cgattccggc ggcgaccacg ccggttccga ccgcgttcta cgacaccgtt attgccgcgg
     2761 cgaagtatct gactgccagc gcgccgagta atcatcggcg cgtcatcgtg gtgttgtcag
     2821 acggcgacga caatttcagt gaagcgatcc gcgagctgtc gattgccgag gcgcgtgcgc
     2881 agcaggacgg gaagactacg tttgcgagca cgcgtgcggg tttgcaggcg cgtcaccgcc
     2941 gtgcggtgga gggcgtgcag caggccgtgc agaaggctga cgtgatcttt tactcggtga
     3001 atccgggtgg tccgtcagtg aagttgaatc agatcagcat gcgggccgag ctcgggatgg
     3061 agtcgattgc cgcgacgacg ggcggcacgg cgttcgtgcc tgagtcggat aaggatctcg
     3121 atcgagtgtt tcggcaggta gcggcggaat tgcgtgggca gtatttgctt cagtactacg
     3181 cgaaccagga agcgccaccg aaccagtttc ggcggatcga ggttcaggtc ccggcgcgcg
     3241 gtgatgtgcg cgtccgcgcg cgacagggct actacccgaa agcgaagtaa atcagtttag
     3301 agttcaagct tcagcttgtc tttgcagcct aaaggctgaa ctcaaaacaa gagctactgt
     3361 ctcatcacga ccagtacatc agccaaccgg ttgataacgg tcaacaacgt tcgtccaccc
     3421 gcgtcgtact gacctgctgc ggccaactcc tcggcctttg ccgcgcccgc tgctgagcct
     3481 gcgagtttga tgtagaacgg ctgcaactcc ggctggctgc gaaactcggt ttccaacctg
     3541 tcgagactct cccgaaaatc ctgaaagccc tttctcacga ccgccttgct ctgctggttc
     3601 gcttgaacta tcgcgggcga agcctcgttc ttcttgaccg cttcgtcgac cgtcgcaatg
     3661 ccgttcgcga cgccgccgag caggtaaatg aacttactca tcaatttgat ctgctcggcg
     3721 actttcgtgg cgcctgcggt gcgtgccgcc gcgaccttct gcgcggacga ttgcgccggt
     3781 ggtgttctcg acgagcggcg gcgcgtttgg cccaaagcgg cgggcgcgat a
//
LOCUS       DASWTX010000242         3338 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_89405, whole genome shotgun sequence.
ACCESSION   DASWTX010000242 DASWTX010000000
VERSION     DASWTX010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3338
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89405"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2357)
                     /locus_tag="VGD38_03795"
     CDS             complement(<1..2357)
                     /locus_tag="VGD38_03795"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEY0727167.1"
                     /translation="MGNEVRHIGELSPAERAALVSRLKQQRAAEREVAQRGAGAQYPL
                     SFAQQRLWFLEQLEPDGPYKVPAGFRLRGPLQVAALEQSVNEIISRHEVLRTTFAEVD
                     GQPVQIVAPRLTLSIPVEDLRALPEGERAERVKQTAARLRERSFDFKQGPLVGAALIR
                     LAENEYHFWFLMHHIVSDGWSIGVFLNELNVAYEAFAAGRRPELPKLSLQYSDFAVWQ
                     RSWLQGETLDRQMKYWKERLGKNAPTLELPTDRPRPPVQSYRGASLTHLIDLELTARL
                     KALARRENVTPYMFLLAVFKTLLSRYTRQDDIVVATPVANRNRTELEPLIGFFVNTLV
                     LRTDLSGDPTFRELLGRVRDVTLGAFAHQDVPFEKLVEELQPERDTSRTPLFQVMFSL
                     QNAPLPPLKMRDIEISLLDDETNVAMFDLSFDVMERADGLLCTLEYNTDLFDGETIKR
                     MLKHFTVLLDAAVNDPSASLGNMPLLTDEERRQLFQWNETRRDFPLDRCVHELVEEQA
                     ARTPEAVALVCGDERLTYAELNAWANRLARHLRACGVGAESRVGILLDREARAGIALL
                     AVLKAGGAWLALDPEYPPSRLAYMLEDGEASVLVTTTKLAASLPAHGARVICLDAEAE
                     QIEAHADSNLGPVAGPDNLAYLVYTSGTTGRPKGTLVEHRPLVNTSLGFAAQHRLTPR
                     DRILQFASLSFDVAAEEFFASWLSGARAVMRPAPVFDTVGEFVRFVEREGLTLANLPA
                     SFWAEWLRTIEEHDGSLLPATLRRVVVGNEKTLSTTVESWLQLVG"
     gene            complement(2376..>3338)
                     /locus_tag="VGD38_03800"
     CDS             complement(2376..>3338)
                     /locus_tag="VGD38_03800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727168.1"
                     /translation="SPDLALKQFDSLFELAPPVTRLDAVDNILPKSYLQEVLPFLKTP
                     ESTSIFYEVKADLSESDVQILAKARVKIIQPGIESLATSTLKLMKKGTTAFRNVCLLK
                     FCAIYDIEPSWNLLIGFPGEGEDVYRKYLDDLPLLVHLPPPTDVYPVRFDRYSPYFVK
                     SNEYGLDLHPLDYYSLIYPFPQEALDNLAYYFNDTNTGAAYAQTMFQWIDRIKEKIDR
                     WTNLWKGNEPPKLLLARNGDQCTFTDTRSGELNEYRLEAISGRILDFLADKAKRVGDV
                     AREFSDLEGFNAAKEMAILREKGLLFQEEDRYLSLVLNSRPAIN"
BASE COUNT          672 a         1002 c          998 g          666 t
ORIGIN      
        1 ttcccaacga gctgcagcca gctttcgact gtcgtactga gcgtcttttc gttgccaacg
       61 acaacgcggc gcaacgtcgc gggcagcaag gagccgtcgt gctcttcgat cgtccgcagc
      121 cactcggccc aaaacgacgc cggcaagttc gccaacgtca aaccctcgcg ctcgacgaac
      181 cggacaaact caccaactgt gtcgaagacg ggcgcaggcc gcatgacagc gcgcgcgccg
      241 gacagccacg acgcgaagaa ctcttcagcc gcaacgtcga aggagaggga agcgaattgc
      301 aagatgcggt cgcgcggcgt caggcggtgt tgcgccgcga agccgaggct cgtgttgacg
      361 agcgggcggt gctcgacgag cgtgcccttt ggacggcccg tcgtacccga cgtgtagacg
      421 aggtacgcga ggttgtcggg accggcgact ggtccaagat tgctgtctgc gtgtgcctcg
      481 atctgctccg cttctgcgtc gaggcagata actcgcgcgc cgtgcgcggg cagtgacgcg
      541 gcaagcttcg tggtcgtcac gagcacggag gcttcgccgt cttcaagcat gtaggcgaga
      601 cgcgacggcg ggtattcggg atccaaagcg agccacgccc cgccggcttt caatacggcg
      661 agcagtgcga tacccgcgcg cgcctcacgg tccagcagta tgccgacacg cgactcggct
      721 ccaacgccgc acgcgcgcag atggcgtgca agccggttgg cccacgcgtt gagttctgca
      781 taggtcagac gctcgtcgcc gcagacaagc gcgacggctt cgggcgtacg cgccgcctgc
      841 tcctcgacga gctcgtgtac gcaacgatcg agcggaaagt cgcggcgcgt ctcgttccat
      901 tgaaagagtt ggcgtcgctc ttcgtcggtg agtagcggca tgtttccgag actcgcggag
      961 ggatcgttta cggcagcgtc gagcagcacc gtgaagtgct tgagcattcg cttgatggtc
     1021 tcgccgtcaa acaaatcggt gttgtactca agtgtgcaca gcaggccgtc cgcgcgctcc
     1081 atcacgtcga acgagagatc gaacatcgcc acgttcgtct cgtcgtccaa caggctgatc
     1141 tcgatgtcgc gcatcttcag cggcgggagt ggcgcgtttt gcaacgagaa catcacctgg
     1201 aacagcggcg tgcggctcgt gtcgcgctcg ggctgcaact cttcgaccag cttctcgaac
     1261 ggcacgtcct ggtgcgcgaa ggcgccgagc gtcacgtctc tgacacggcc aagcaactcg
     1321 cggaaggtcg ggtcacccga caggtctgtg cgcaggacga gagtgttgac gaagaagccg
     1381 atgagcggct ccaactcggt gcggttgcga ttcgcgacgg gcgtcgcgac gacgatgtcg
     1441 tcctgtcttg tgtagcgact gagcaacgtc ttgaagacgg cgagcagaaa catgtagggc
     1501 gtcacgtttt cgcgacgcgc caatgctttc agacgcgcgg tcagttcgag atcgatcagg
     1561 tgcgtgagcg atgcgccgcg ataactctgc acgggcgggc gcggcctgtc ggtcggcagt
     1621 tcaagcgtgg gcgcgttttt gccgagccgc tccttccaat acttcatctg gcgatcgagc
     1681 gtctcacctt gcagccacga gcgttgccac actgcgaaat cagaatattg aagcgacagc
     1741 ttcggcaatt ccggacgtcg tcccgcagcg aaggcttcgt aagctacgtt cagctcgttg
     1801 aggaacacgc cgatggacca gccgtccgac acgatgtggt gcatcagaaa ccagaagtga
     1861 tattcgtttt cggccaggcg tatcagtgcg gcgccgacga gtggtccttg tttgaagtcg
     1921 aacgaccgtt cgcgcaggcg cgccgcagtt tgtttgactc gctcggcgcg ttcgccttcc
     1981 ggtagagcac gcaagtcttc aaccgggatc gatagcgtca accgcggcgc gacgatctgc
     2041 acgggttgcc cgtcgacctc ggcaaaagtg gtgcgcagaa cttcgtggcg gctgatgatt
     2101 tcgttaacac tctgttcgag cgccgcgact tgcagcggac cacgcagccg gaagccggcg
     2161 ggcaccttgt atgggccatc aggctccaac tgttcgagaa accaaagccg ctgctgcgca
     2221 aacgagagcg ggtactgcgc gcccgcaccg cgctgcgcga cctcccgttc cgccgctcgc
     2281 tgctgtttca gacgcgacac gagcgccgcg cgctccgcag gcgacaactc gccgatatgt
     2341 cgaacttcgt tccccatgct ctttactaac agtgattaat tgatcgcggg acgggagttg
     2401 agaaccagac ttaggtagcg gtcttcttcc tggaagagca aacccttttc gcgcaggatt
     2461 gccatctctt tcgcagcgtt gaatccttca aggtcgctga attctcgcgc cacgtcgccg
     2521 acgcgttttg ctttgtcggc caggaagtcg agaatccgtc cgctgatcgc ttctaaacgg
     2581 tattcgttta gctcacccga acgcgtatca gtaaacgtgc attgatcgcc atttcgagca
     2641 agcagaagct tcggaggctc attacctttc cacaggttgg tccagcgatc gatcttctcc
     2701 tttattctat cgatccactg aaacatcgtt tgcgcatacg cggcgcccgt attcgtgtcg
     2761 ttaaagtaat aagcgagatt gtccaatgcc tcttgcggga acggatagat cagcgagtag
     2821 taatccagcg ggtgcagatc aagcccgtat tcgttgctct tcacgaagta cggactgtac
     2881 cggtcgaacc gcacgggata cacgtccgtc ggcggcggga gatgcacgag cagcggaaga
     2941 tcatcaagat acttccgata cacgtcctca ccctcgccgg gaaaaccgat gagcaggttc
     3001 catgacggtt cgatatcgta aatggcacag aacttcagca gacacacgtt gcgaaacgca
     3061 gtggtccctt tcttcattaa cttcaacgtc gacgtagcga gcgattcaat ccccggctga
     3121 atgatcttca cgcgcgcctt cgccaggatc tgcacgtctg actcactcag atccgctttc
     3181 acttcataga agatcgaagt gctctccggc gtcttcaaaa acggcaacac ttcctgcaga
     3241 taacttttcg gaaggatgtt atcgacggcg tccaaacgcg taaccggcgg agccaactca
     3301 aacagcgagt caaattgctt gagcgccagg tcggggct
//
LOCUS       DASWTX010000243         2013 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_307347, whole genome shotgun sequence.
ACCESSION   DASWTX010000243 DASWTX010000000
VERSION     DASWTX010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2013
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307347"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..956)
                     /gene="murJ"
                     /locus_tag="VGD38_03805"
     CDS             complement(<1..956)
                     /gene="murJ"
                     /locus_tag="VGD38_03805"
                     /inference="COORDINATES: protein motif:HMM:NF015013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015648 - lipid-linked peptidoglycan
                     transporter activity [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HEY0727169.1"
                     /translation="MKDDVKLEQPAGTAAGETLEQVGAGTPEPSPEAPKPKPNTPSTA
                     RSAFYVGAGILISRIVGLIRQRIFAHYFGTSLEGDAFSAAFRIPNFLQNVFGEGALSA
                     SFIPVYAKLLAQEDEEHAGRVANAVFGILALVTSIIVLIGVLTTPYIVTGIAAGFDEQ
                     RRELTITLVRIFFPGAGLLVLSAWCLGVLNSHHKFFISYTAPVAWNAAIIFSLIFFGN
                     RVDLAQLAEATAWGSVVGSALQFGVQLPMVLRLIHHFRPALAFASEHVRQVLRSFFPV
                     FISRGVVQISAFVDAFLASFLGQGAVVALTYAQSLYTLPVSL"
     gene            complement(963..>2013)
                     /locus_tag="VGD38_03810"
     CDS             complement(963..>2013)
                     /locus_tag="VGD38_03810"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY0727170.1"
                     /translation="NHLLLLVERALEQARLRTENVLLREEWSRRYGFPRIIGESEVVK
                     RAVAETQRVAQTEATVLLLGESGTGKELFARAVHHLSPRRDKAFVAINCAAIPETLIE
                     NELFGHERGAFTGATDRRQGKFELAAGGTVFLDEIGELPLGVQGKLLRAIEEKMIDRI
                     GGRAPVSVDVRVVAATNKDLKTAVDNGQFRGDLFFRLAVFPIEIPPLRDRDDDVTLLA
                     RHFAAEIGRELRGREAQLSDEAAAALKRHGWPGNVRELENAIERACILSDTMKLEPAD
                     LGLNPTATGDADTLQQLDLSGTLSDVAHRVLRVVERRKIQSALAANDGNKSKTAEDLG
                     VSYKTLLNKMKEYTL"
BASE COUNT          402 a          568 c          641 g          402 t
ORIGIN      
        1 aacaaactca ccggcaacgt gtaaagactc tgcgcgtagg taagcgcaac aacggcgccc
       61 tgaccgagaa agctcgcgag aaacgcgtcg acgaaagcac tgatctgcac cacgccgcgg
      121 ctgatgaaca ccggaaagaa actccgcagc acttgcctga cgtgctcgct cgcaaacgcc
      181 agcgcgggac gaaagtgatg aatcagccgc aacaccatcg gaagctgcac gccaaactgc
      241 aaagcgctgc cgaccaccga accccacgcc gtcgcttctg cgagttgtgc gaggtcaacg
      301 cggttgccga agaagatgag cgaaaagatg atcgcggcgt tccaggctac gggcgcggtg
      361 taagagatga agaacttgtg atgactgttc agaactccca aacaccacgc cgaaagcacg
      421 agcagaccgg cgcccgggaa aaagatcctg acgagcgtga tcgtcaactc tcgccgttgt
      481 tcgtcgaagc ccgccgcgat tccggtgacg atgtacggcg ttgtgagcac gccgatcaaa
      541 acgatgattg acgtgacaag ggcgagaatt ccaaacaccg cattcgccac gcgtccggcg
      601 tgttcctcgt cttcctgggc caacagcttc gcgtaaacgg gaatgaacga cgccgagagc
      661 gcgccttcgc cgaagacgtt ctgaagaaag tttggaatgc gaaatgcggc gctgaaggcg
      721 tcgccttcga gggaggtgcc gaagtagtgc gcgaagattc gctggcggat cagcccgacg
      781 atgcggctga tcagaatgcc ggcgccgacg tagaacgccg agcgggccgt gctcggcgtg
      841 ttgggtttcg gtttcggagc ttcaggcgat ggttctggag tgccggcgcc gacttgttcg
      901 agagtctcgc ctgccgcggt gccggcaggt tgttcgagct taacgtcgtc cttcatctgg
      961 cgtcagagag tatattcttt catcttgttc agcagcgttt tataactgac gccaaggtct
     1021 tcggcggtct tgctcttgtt gccgtcgttt gccgcgagcg cgctttgaat cttgcggcgc
     1081 tcgaccacgc gcaacacgcg atgggccacg tctgacaacg tgcctgaaag atcgagttgc
     1141 tgaagggtgt cggcgtcgcc ggtcgcggtt gggtttagac cgagatccgc gggttcgagt
     1201 ttcatcgtgt cagacaggat gcacgcgcgt tcgatcgcgt tctcgagttc gcgcacgttg
     1261 ccgggccagc catgacgctt caaagctgcg gctgcttcgt cgctgagctg cgcttcacgg
     1321 ccgcgcagtt cgcgtccgat ttcggcggcg aagtgacgcg ccaataacgt gacgtcgtca
     1381 tcgcgatcgc gcagtggcgg aatctcgatc gggaacactg cgaggcggaa gaaaagatcg
     1441 ccgcgaaact gaccgttgtc gactgctgtt ttcaagtctt tattggtggc ggcaacaacg
     1501 cgaacgtcga ctgaaacagg ggcgcgtccg ccgatgcgat cgatcatctt ctcttcgatc
     1561 gcgcgcagca gtttgccttg aacgccgagt ggcaactcgc cgatttcgtc gagaaaaacg
     1621 gtgccgccgg ctgcgagttc gaattttccc tggcgtcgat cagttgcgcc ggtgaatgcg
     1681 ccgcgttcgt gtccgaaaag ttcattttcg atcagggttt cgggaatggc ggcgcagttg
     1741 atcgcgacga acgctttgtc gcggcggggt gaaagatgat ggaccgcgcg ggcgaacagc
     1801 tctttgccgg tgcctgactc gccgagtagc agcacggttg cttcggtttg ggcgacgcgt
     1861 tgggtttcgg cgacggcgcg ctttacgact tccgactcgc cgatgattcg cgggaagccg
     1921 tagcggcgcg accactcttc gcgtagtagg acgttttccg tgcgcaggcg cgcttgttcg
     1981 agcgcgcgct cgacgagcaa caggagatgg ttt
//
LOCUS       DASWTX010000244         4784 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_25433, whole genome shotgun sequence.
ACCESSION   DASWTX010000244 DASWTX010000000
VERSION     DASWTX010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4784
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25433"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..525)
                     /locus_tag="VGD38_03815"
     CDS             complement(<1..525)
                     /locus_tag="VGD38_03815"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF012456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEY0727171.1"
                     /translation="MPNLLDIRRRIKSVKNTQQITKAMKMVSAAKLRRAQDRVVTARP
                     FANKMGEVLGELAKRTDEDFHHPLLDMRGDQRYLLVLITADKGLCGAFNTNLTKAAQQ
                     FMRDNADKQVELLAIGRKGRDFFRNRRAVIAAEYIGLTGKGRVEFSEALEVARSIIKL
                     YTDDTGIDKVFLIYN"
     gene            complement(537..2123)
                     /gene="atpA"
                     /locus_tag="VGD38_03820"
     CDS             complement(537..2123)
                     /gene="atpA"
                     /locus_tag="VGD38_03820"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEY0727172.1"
                     /translation="MEPIRASEINDIIRKQIENFDTGVTVTEVGTVIKIGDGIAEIHG
                     LEKVMAGELLEFPHDVRGLALNLEEDKVGAVLFGEFQAIREGDLVKRTGRIMQVPVGE
                     ALVGRVVDVLGNPIDDAGPIVTEHYYPVERIAPGVIDRQPVKEPLQTGLKAIDAMVPI
                     GRGQRELIIGDRQTGKTAVAVDTIINQKGKDVICIYVAIGQKASTVAQVVRTLQDYGA
                     MDYTIVIKATASDPAAMQFLAPYSGAAMGEYFRDNGKHALTIYDDLSKQAAAYREISL
                     LLRRPPGREAYPGDVFYLHSRLLERAAKLSDLKGGGSLTSLPIIETQAGDISAYIPTN
                     VISITDGQIFLEADLFNSGFRPAINVGNSVSRVGGSAQIKAMKQVAGTLRLDLAQFRE
                     LQAFAQFGSDLDKATQAQLARGQRLTEILKQPQYQPMDVEKQVLVIWAATNGYTDDIA
                     VEDVRRFESSLLKFVENSHPGLLAAIAEKKSLTDDIKADLKQVLEDFKDDWQKQASGE
                     SDFASAPVSRASAAAAPQPA"
     gene            complement(2146..2688)
                     /gene="atpH"
                     /locus_tag="VGD38_03825"
     CDS             complement(2146..2688)
                     /gene="atpH"
                     /locus_tag="VGD38_03825"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit delta"
                     /protein_id="HEY0727173.1"
                     /translation="MSIQTVARRYASALADVIIERREEREVQKEIEVWASMIDSNPQL
                     KEVFANPTVAYDQKRTVLEELISRTRVRETTASFLRVLLRNQRLAQLPEVSARLGQVL
                     DERAGVVAAEITTARPIPEELKKSLHDTLASATGRTVRLTFATDEAIIGGLVARIGST
                     VFDGSVENNLERLAEGLVGT"
     gene            complement(2685..3206)
                     /locus_tag="VGD38_03830"
     CDS             complement(2685..3206)
                     /locus_tag="VGD38_03830"
                     /inference="COORDINATES: protein motif:HMM:NF017242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727174.1"
                     /translation="MIILALAEGSSWYNYPGLELWKFMNLAIFLGIGIYILRRPISQA
                     LGTRREAIKQELVQAQQQKAQALQKMAEADSLLSRLEADVRTVHEQSRKEAESERQRV
                     AESTARELEKLKQQAEREMDTAAKVARKTLRQFLAQRSVEFARQRVRGQISPEADRQL
                     IEDSIGELRRARV"
     gene            complement(3237..3683)
                     /locus_tag="VGD38_03835"
     CDS             complement(3237..3683)
                     /locus_tag="VGD38_03835"
                     /inference="COORDINATES: protein motif:HMM:NF012645.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F0 subunit B"
                     /protein_id="HEY0727175.1"
                     /translation="MFLAQIQLVPDGTLLLHLLMVAVMVFILNRTLLKPINQILAERE
                     RQVEERIREAETLAAETEEKLRQYNATLREARTEGYRLLEKERAAALKEKDEKVRQYR
                     EQMSKTVAAEIESTRQQEQKVREELETQAATIGDLISTQILRRPAR"
     gene            complement(3815..4672)
                     /locus_tag="VGD38_03840"
     CDS             complement(3815..4672)
                     /locus_tag="VGD38_03840"
                     /inference="COORDINATES: protein motif:HMM:TIGR00180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEY0727176.1"
                     /translation="MNRKALGRGLGALLSSDSTVDLGPEPTEVEVDLIQPGPMQPRTH
                     FDEGSLEGLADSIRTHGIVQPLLVRRQGDRYELIAGERRWRAARLAGLAKVPVVVKEV
                     PDQDLLEIALIENIQREDLNPIEEAQAYKRLIENVGLTQEALAARVGRDRSYITNYLR
                     LLKLPDDLQQLVIEGRLSTGHARTILGLAHADLQRRIARQVIDGALSVRATEHLVRKA
                     VEGSPAKTASAVDPNIRAAETKLRRALGTQVRIVQLRGEGPGKIEISFFSNQDLDRIY
                     NLLLSTNRV"
BASE COUNT          872 a         1415 c         1345 g         1152 t
ORIGIN      
        1 gttgtagatg agaaaaactt tgtcgatgcc ggtgtcgtca gtgtagagct tgatgatcga
       61 ccgcgcgact tcgagcgctt cggaaaattc gacgcgcccc ttgcccgtta gcccgatgta
      121 ctcagccgcg atcactgcgc ggcggttgcg gaagaagtca cgacccttgc gcccgatggc
      181 caacagctcg acttgcttat cggcgttgtc gcgcatgaac tgttgcgcgg ctttcgtcag
      241 gtttgtgttg aatgcgccgc acagaccctt gtcggcagtg atcaggacca gcaggtaacg
      301 ctgatcgccg cgcatgtcga gaagtgggtg atgaaaatct tcgtcggttc gcttcgccag
      361 ctcgcctaaa acctcgccca tcttgtttgc gaatggacgc gccgtgacga cgcgatcctg
      421 tgcgcgtctg agcttcgcag cagaaaccat cttcatggct ttcgtgatct gctgcgtgtt
      481 tttgaccgac ttgatacgcc ggcgaatgtc gagaagatta ggcattgctc aatcgtttac
      541 gccggttgtg gcgccgctgc ggctgaggct cggcttactg gcgctgacgc gaaatcagat
      601 tcgcccgagg cctgcttctg ccagtcgtct ttgaagtctt ccaatacttg cttgagatcg
      661 gctttgatgt cgtctgttag tgatttcttt tctgcaatcg ctgcgagcaa gccgggatgc
      721 gagttctcta caaacttgag caggctcgac tcgaaccgcc gcacgtcttc aaccgcaatg
      781 tcatcggtgt agccgttcgt cgctgcccag atcacgagca cctgtttttc gacgtccatc
      841 ggttgatact gcggttgttt cagaatctca gtgagacgtt gaccacgagc caactgcgct
      901 tgcgtcgctt tgtcgaggtc ggaaccgaac tgcgcgaacg cctgcaactc gcggaactgc
      961 gcgaggtcga gacgcagcgt tcccgcgacc tgcttcatcg ctttgatctg cgccgaaccg
     1021 ccgacgcgcg agacgctgtt gccgacgttg attgccggac gaaagccgct gttgaaaagg
     1081 tcggcttcga ggaagatctg tccgtcggta atcgagatca cgttggtcgg gatgtatgcc
     1141 gagatgtcgc ccgcctgcgt ttcgatgatg ggcaaactcg tcaacgaacc gccgcccttg
     1201 aggtcggaaa gttttgccgc gcgctcaagc aaacgcgagt ggagatagaa gacgtcgccc
     1261 gggtatgcct cgcggcccgg tggccggcgg agcagcagcg aaatctcgcg atacgcggct
     1321 gcttgttttg aaaggtcgtc gtaaatcgtc agcgcgtgct tgccgttgtc gcggaagtac
     1381 tcgcccattg ccgcgcccga gtacggcgcc aaaaactgca tcgccgcggg gtcggaagcc
     1441 gtcgctttga tgacgatcgt gtagtccatc gcgccgtagt cctgcaacgt ccgcacgacc
     1501 tgggccacgg tggacgcctt ctgaccgatc gcgacgtaaa tgcagattac gtcttttcct
     1561 ttttgattga tgatggtgtc gacagcgacc gcggtttttc ctgtttgacg atcgccgatg
     1621 atcagttcgc gctgaccgcg accgatcggc accatcgcgt cgattgcctt gagaccggtt
     1681 tgcagcggct ctttcacggg ctgtctgtcg atcacgccgg gagcgatgcg ctcgaccgga
     1741 taatagtgtt cggtgacaat tggaccagcg tcatcgatcg gattgccgag cacgtcgacg
     1801 acgcggccga cgagggcttc accgaccggc acctgcatga tgcgtccggt gcgcttgacc
     1861 agatcgcctt cgcggatcgc ctggaactcg ccgaacaaca ctgcgccgac tttgtcttct
     1921 tcgaggttga gcgccagtcc gcgaacgtcg tgtggaaact cgagcagttc gccggccatg
     1981 actttttcga gaccgtgaat ctcggcgata ccgtcgccga tcttgatcac ggtgccgact
     2041 tcggtgacgg tcacgccggt gtcgaagttt tcgatctgtt tgcgaatgat gtcgttgatt
     2101 tcgctggctc taattggttc catgatgtcc tctacttcta ttcgcctaag tgccgacaag
     2161 cccctcggcc aatcgctcga gattgttttc cacggatccg tcgaagacgg ttgaaccgat
     2221 gcgtgcgaca agaccgccga tgatggcttc gtcagtcgca aaggtcaggc gtacggttcg
     2281 accggtcgcg gatgcgagcg tgtcgtgcaa tgatttcttc aactcttcgg gaatcggtct
     2341 cgcagttgtg atctccgcgg cgacaacgcc ggcgcgctcg tccagaacct gaccgaggcg
     2401 cgccgaaact tccggcaatt gggccagccg ctgatttctc aacagcacgc gcagaaagct
     2461 cgcggtcgtt tccctgacgc gagtgcgtga gatcaactcc tcgagtacgg ttcgtttctg
     2521 atcgtaagcg acagttggat tggcgaagac ttctttcagc tgcggattac tgtcgatcat
     2581 tgaagcccaa acttcgatct ctttttggac ttcccgttct tcgcgacgct cgatgatcac
     2641 atcggccagg gctgacgcgt accggcgcgc gaccgtctgt atgctcaaac tcgggccctc
     2701 ctcaattcac cgatgctgtc ctcgatcaac tggcggtcgg cttcgggact gatctggcca
     2761 cgaactcttt ggcgtgcgaa ctcaacactt ctctgcgcca gaaactggcg caacgttttg
     2821 cgcgccacct tcgcggcggt gtccatttcg cgttctgctt gttgcttcag tttctcgagc
     2881 tcgcgcgcgg tcgattcagc gacgcgttgt cgctctgatt cggcttcttt gcgtgattgt
     2941 tcgtggaccg tgcgaacgtc cgcttcgagt ctgctcaaca gggagtcggc ctctgccatc
     3001 ttctggagtg cttgcgcctt ctgttgttgc gcctggacca gttcctgctt gatcgcttcg
     3061 cgccgggtgc cgagtgcctg gctgatgggg cgccgcagga tgtagatacc gatacctaaa
     3121 aagatagcca ggttcataaa cttccacagc tcaaggccgg gatagttgta ccagctcgat
     3181 ccttctgcca acgcgagtat gatcatttca gttcaacgat gtgagattcg agtaaattat
     3241 cgagccggcc ggcgcagtat ctgcgtactg atcaaatcgc cgatcgtcgc cgcctgcgtt
     3301 tcgagctctt cacgaacctt ttgctcctgc tgccgagtcg actctatctc ggctgcaacc
     3361 gtcttcgaca tttgctctcg gtactgacgt actttctcgt ccttctcttt aagtgccgca
     3421 gcacgttcct tttcgaggag tcgataacct tcagttcggg cttctcgcaa ggtagcgttg
     3481 tactgcctca acttctcttc tgtttccgcc gcgagtgtct ccgcctctct tatgcgttcc
     3541 tccacctgcc gttcacgttc ggcgagtatc tgattgatcg gcttcagcag cgttcggttc
     3601 aggataaata ccatcacagc caccatcaag aggtggagca gtaacgtacc gtcaggcacc
     3661 aactgaattt gggcgagaaa catccgattc cttctaagtt attaacttta tctgccgaaa
     3721 agcgcgcgag tctaacacgc acccccacta tccaccaaat ggaccccggc ggcacgcccg
     3781 gatttacatt atgctacgga ccatgtttta tcttttacac tcgattcgta gagagcagca
     3841 gattgtagat tcgatccaga tcctgattgc tgaaaaaact gatttctatc ttgcctggcc
     3901 cctcgccacg gagttgcacg atcctgacct gagtgcccaa cgctcgcctc agcttggtct
     3961 cggccgcgcg gatgttggga tcgaccgcgc tcgccgtctt ggcgggcgaa ccctcgaccg
     4021 ctttacgaac aagatgttcc gtggctcgca ccgagagagc gccgtcgatg acctgtcgcg
     4081 cgatccggcg ctgaagatcc gcatgcgcca atcccaggat cgtgcgggca tggccggtcg
     4141 acaggcggcc ttcgataacg agttgctgca agtcgtccgg gagcttgagc aaccgcagat
     4201 agttcgtaat gtatgaacgg tcgcggccaa cacgcgccgc cagcgcctct tgcgtcagtc
     4261 ccacattctc gatcaggcgt ttgtaagctt gcgcctcctc gatcgggttc agatcctctc
     4321 gctggatatt ttcgatgagc gcgatttcca gcaggtcttg atccgggact tctttcacga
     4381 cgaccggaac cttggccagc ccagcgagtc gggccgcgcg ccaacgccgc tcgccggcga
     4441 ttagctcgta ccggtctccc tgccgccgca ccagcaatgg ctggacgatc ccgtgagtgc
     4501 ggatcgaatc cgccagaccc tcgaggctac cctcgtcaaa atgcgtgcgc ggctgcatcg
     4561 gtcctggctg gatcaaatca acttcgactt ccgtcggttc gggaccgaga tcgaccgtac
     4621 tgtcagacga cagtagagct cccagtcctc gacccagtgc ttttcgattc atagacaatc
     4681 tccctggcta gctgtgagta agcttcggcg cctttcgaat gggcgtcgta actgatgatc
     4741 ggtttgccat agctgggcgc ctcggcgagc cgaacgttgc gtgg
//
LOCUS       DASWTX010000245         2959 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_47572, whole genome shotgun sequence.
ACCESSION   DASWTX010000245 DASWTX010000000
VERSION     DASWTX010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2959
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47572"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2497)
                     /gene="polA"
                     /locus_tag="VGD38_03845"
     CDS             complement(<1..2497)
                     /gene="polA"
                     /locus_tag="VGD38_03845"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEY0727177.1"
                     /translation="MSAAKKTERVFLIDSMSHIFRAFFAPLQNRAAPLATASGQVTQA
                     VYIFANMLLKLLREEQPDYIACVFESREKTFRHETFADYKKNRLEMPEDLASQMPYIF
                     RLCDVLNIEVINSPGYEADDVIGALANRAAEQGLQAVIVSNDKDMCQLVRDPLIVCMR
                     QNSQVVKRKEPVPPVEWCDEAWVEKKFGVTADKLVDLLGLMGDSIDNIPGAPGIGSKG
                     AVQIIQQFGSIENALANWESVKHKTYRESLRDNADLIRQSRELARIRTDLDVPLELDK
                     IKTRPPDRAAAYELFHEMEVTLLQKDYADAAVQRPPTTQAEHNYRVVQTKNDLNNLVR
                     TLFDAEHIGVAIADSTPAGTGEQECFTELDATRGIAFSTGPGVAAYVDLEKFEGGADQ
                     AIGPLREILSNGLVEKSVHDLKRAVGLLDRFEITLEGVKDDTFLAAYLLDPARSKYEL
                     VDLAREALGIENGKAPAANWSESAWQTVTAADLTAHTARVLRERILEQKLETIYSEIE
                     LPLAPLLYRMERAGLKVDTKVLTDLSNYIGQELHKLTIKIYELAGREFNIGSPKQVGE
                     VLGDLNIDIGRKTSTGRVSTSKAVLEELAQQYELPRLIIEYRELDKLKSVYTDALPQQ
                     IATDGRIHCQLNQTVAATGRLSSSDPNLQNIPIRTEMGRRIRRAFVAEKGNKIVSADY
                     SQLELRLLAHITQDPVMLEAFQKGEDIHARTARLVFGARTDEELREARRFAKIVNFAI
                     AYAIEPWGLSQRVGITRQEAKKVIEDYYNTYKGVRRYMEEVPLRAREHGYVRSIYGRI
                     RPLAGINDRNANIRKAAEREAINMPIQGTASDIV"
     gene            complement(2494..>2959)
                     /locus_tag="VGD38_03850"
     CDS             complement(2494..>2959)
                     /locus_tag="VGD38_03850"
                     /inference="COORDINATES: protein motif:HMM:NF013046.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="histone deacetylase"
                     /protein_id="HEY0727178.1"
                     /translation="IIDWDVHHGNGTQGIFYADPTVFFFSAHQYPWYPGTGSRGEKGT
                     GRGLGYTLNLPLRAATPVVEHKRGFEAALDEMSSNFSPDLIIISAGFDSHIGDPLGQL
                     LLTDQDFIDLTRAVKQWAASSCQGRLVSCLEGGYNLETLGETVRAHVEELNR"
BASE COUNT          590 a          907 c          797 g          665 t
ORIGIN      
        1 ttacgatatc acttgccgtg ccctgaatcg gcatgttgat cgcttcgcgt tcggcggcct
       61 tgcgaatatt tgcattgcga tcgttgatgc ctgcgagcgg acgaatgcgg ccgtagatcg
      121 atcgcacgta accgtgctcg cgagcccgca acggcacttc ttccatgtaa cgccggacgc
      181 ctttgtacgt gttgtagtaa tcctcgatga cttttttcgc ttcctgccgc gtgatgccga
      241 cgcgttgcga caatccccac ggctcgatcg cgtacgcgat agcgaagttt acgatcttcg
      301 caaaacgccg tgcttcgcgt agctcttcgt cagtgcgcgc gccaaagacg agccgcgccg
      361 tgcgcgcgtg aatgtcttcg cctttctgaa acgcttcgag catcaccgga tcctgcgtga
      421 tgtgggccaa cagccgcaat tcgagctgtg aatagtcagc cgaaactatc ttgtttcctt
      481 tttccgcgac aaaggcgcgc cggatgcgcc gtcccatctc cgtgcgaatc ggaatgtttt
      541 gcaggttcgg atcgctcgac gacaaacgcc cggtcgccgc gacagtttga ttcaactggc
      601 agtgaatccg gccgtcagtc gcgatctgtt gcggcaacgc atcggtgtaa acactcttca
      661 gcttatcgag ctcgcgatac tcgatgatca gccgcggcaa ctcgtactgt tgcgccagct
      721 cttcgaggac cgctttgctg gtcgaaacgc gtcccgtcga agtctttcgt ccgatgtcga
      781 tgttcagatc gccgagcacc tcgccaactt gctttggcga accgatattg aattcacggc
      841 ccgccagttc gtagatcttg atggtcagtt tgtggagctc ctgaccgatg tagttggaca
      901 ggtccgtgag caccttcgtg tcaactttta gccctgcccg ctccatgcga tacaacaacg
      961 gcgccagcgg cagctcgatc tcggaataga tcgtttcgag tttctgttcg agtatccgtt
     1021 cgcgtaacac gcgcgcggtg tgcgcggtca gatcagcagc ggtaactgtt tgccacgcgc
     1081 tttcggacca gttagccgcg ggtgctttgc cgttctcgat gccgagtgct tcacgcgcga
     1141 gatcgacgag ctcgtacttg ctgcgcgccg gatcgagtaa gtaagcagcg aggaacgtgt
     1201 cgtctttcac accttccagc gtgatctcga aacgatccag caaaccaacc gctcgcttga
     1261 gatcgtgaac cgacttctcg accaaaccat tcgacagtat ttcacgcaac ggcccgatcg
     1321 cctgatccgc tccgccttca aacttctcca aatcaacgta agccgcgaca cccggtccgg
     1381 ttgaaaacgc aatcccgcgc gtggcgtcga gctcggtgaa acactcctgc tcgcccgttc
     1441 cggccggcgt cgaatcagcg atcgcaacgc cgatgtgttc cgcatcaaac aacgttcgaa
     1501 cgagattgtt caggtcgttc ttggtctgaa cgacgcgata gttgtgctcg gcttgcgtcg
     1561 tgggcggccg ctgaaccgcc gcatccgcgt agtccttttg cagtaacgtg acctccatct
     1621 catgaaacag ctcatacgcc gcggcgcgat ccggcggacg cgtcttgatc ttgtcgagct
     1681 cgagtggaac gtcgagatcc gtgcgaatgc gcgcgagctc acgcgactgc ctgatcagat
     1741 cggcgttgtc gcgcaacgac tcgcgatacg tcttgtgttt cactgactcc cagttcgcga
     1801 gcgcattctc gatcgagcca aactgctgaa tgatctgcac cgcgcctttc gaaccgattc
     1861 ccggcgcgcc gggaatgttg tcgatcgagt cgcccatcaa accaagcaga tcgacgagct
     1921 tgtcggcagt cacaccaaac ttcttctcca cccacgcttc gtcacaccat tccaccggcg
     1981 gcactggctc cttgcgtttc acgacctgcg aattctgccg catgcagacg atcagcggat
     2041 cgcgcacgag ctggcacatg tctttgtcgt tcgacacgat cacggcttgc agtccctgct
     2101 cagcggctct gttagcgagc gcgccgatca cgtcgtcagc ctcgtagccc ggcgaattga
     2161 tcacttcgat attcagcacg tcgcaaagcc ggaagatgta gggcatctgg ctcgcgagat
     2221 cttcaggcat ctcgagccgg ttcttcttgt aatcggcaaa ggtctcgtga cgaaacgttt
     2281 tctcgcgcga ctcaaacacg cacgcgatgt aatcaggctg ctcttcgcgc aagagtttca
     2341 acagcatgtt cgcaaagatg tagaccgcct gtgttacctg acctgacgca gtggcgagcg
     2401 gtgcggcgcg gttctgcaac ggcgcgaaga acgcacgaaa gatgtgcgac atcgagtcga
     2461 tcaaaaacac ccgttctgtt ttcttcgccg cgctcaccga ttcaattcct caacatgcgc
     2521 ccgcacagtt tcacccaacg tttctaaatt gtatccaccc tcgagacagg aaacgagacg
     2581 cccctgacaa ctactcgcag cccattgctt caccgcgcgc gtcaggtcga tgaaatcctg
     2641 atcggtgagc agcagttgcc cgagcggatc gccgatgtgc gaatcgaaac ccgccgagat
     2701 gatgatcaag tcgggactaa agttactcga catctcgtcc agtgcggctt caaagcctcg
     2761 tttgtgttcg accacaggcg tggccgcacg aagcggaaga ttcaatgtgt atccaagtcc
     2821 acgtccggtg cccttctcgc cacgcgagcc ggtgcccggg taccagggat actggtgcgc
     2881 cgagaagaag aagaccgttg ggtcggcgta gaagattccc tgcgtaccgt taccgtgatg
     2941 cacgtcccag tcgatgatc
//
LOCUS       DASWTX010000246         1730 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_372159, whole genome shotgun sequence.
ACCESSION   DASWTX010000246 DASWTX010000000
VERSION     DASWTX010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1730
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_372159"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1336)
                     /locus_tag="VGD38_03855"
     CDS             complement(<1..1336)
                     /locus_tag="VGD38_03855"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0727179.1"
                     /translation="MKRLLTVLLYCVFASAVSAMAVTEESEGRIKGTVKDSNGAIVSG
                     IDVTLLLPNQAVVRATVTDAEGSFAFDGVPIGTYGISIDHNGFVRHRSAVHVTSGETR
                     EVSIVLEVDTIVENVTITAEAGMVADTRKVETQVNLIPEQEIFERAAEVVAQVVDEEP
                     GVNLQRTSPSLSAVFVRGLTGRNVAVFVDGVRYTTSAQRGGVGTFFSLIEPSSLETVE
                     ILRGPNSSQYGSDVHGGVVNFISQAPRYGNVDSEFHGKGNVFYTSPTNGFGGNTQFTY
                     GTRTYGLLLNMNGRRISTLKPADGLDYHAAVTRFLGLPSDVFGTRLPDTGFTQYGALA
                     RASFNLDENTQFLVSYARNQQDNGKRYDQLLGGDGNNIADLRNLMTDTFYVRLFRQNF
                     GFFDNGSFTFSYNGQREERVNQGGNGNPAAAITNQRERTNVLGFNFYLDKQFG"
     gene            complement(1442..>1730)
                     /locus_tag="VGD38_03860"
     CDS             complement(1442..>1730)
                     /locus_tag="VGD38_03860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727180.1"
                     /translation="IAKMIPKGQQQIMPASVSAFLAGNDDVPRVRVRVRRLVELAGGD
                     PRLLVSSAPLVRFLPWTALTVLVVISVMIESRPQVLAAVHQLVEHVVHFLS"
BASE COUNT          380 a          502 c          487 g          361 t
ORIGIN      
        1 cgccgaactg cttgtccaga tagaaattaa agcccaagac gttggtgcgt tcgcgttgat
       61 ttgtgattgc ggcggcggga tttccgttac caccctggtt gactctctct tcgcgctggc
      121 cgttgtaaga aaacgtgaac gagccgttgt cgaagaaacc aaaattctgc cggaacagac
      181 ggacgtaaaa cgtgtcggtc atcaggttgc gcaggtcggc gatgttgttg ccgtcgccgc
      241 cgagcaactg gtcgtagcgt ttgccgttgt cctgctggtt gcgcgcgtag ctgacgagaa
      301 actgcgtgtt ctcgtcgaga ttaaaactcg cgcgcgcgag ggcgccgtat tgagtgaagc
      361 cggtgtcggg tagacgcgtg ccaaaaacat cggagggcaa accgagaaaa cgcgttaccg
      421 cagcgtgata atcgagaccg tccgccggtt tgagcgtgct gatgcggcga ccgttcatgt
      481 tgagcaacag gccgtaagtg cgcgtgccgt aagtgaactg tgtgttgccg ccgaagccgt
      541 tcgtcggcga ggtgtagaag acgttgcctt taccgtgaaa ctcgctgtcg acgttgccgt
      601 aacgcggcgc ctgtgaaatg aagttgacca cgccgccgtg aacgtcggag ccgtattgcg
      661 aactgtttgg accacgcagg atctcgacag tttcgagcga cgaaggttcg atcaaactga
      721 agaacgtgcc gacaccgccg cgctgcgcgc tcgtcgtgta acgaacgcca tcgacaaaca
      781 ccgcgacgtt tcttccagtc aacccacgca caaacaccgc gctcaacgac gggctcgtgc
      841 gttgcaggtt cacacccggt tcttcatcga caacctgcgc cacgacttcc gctgcgcgtt
      901 caaagatctc ctgttcgggg atgaggttta cctgcgtctc caccttgcgc gtatcagcca
      961 ccattcccgc ttcagccgtg atcgtgacgt tctcgacgat cgtgtccact tccagcacga
     1021 tactcacttc gcgtgtctcg cctgaagtca cgtgaacagc cgaacgatgc cgcacaaatc
     1081 cattgtgatc gatgctgatt ccgtaagtgc cgatcggaac gccgtcaaac gcgaagcttc
     1141 cttcggcgtc tgtaaccgtt gcgcgcacga ccgcctgatt tggaagcagc agtgtgacgt
     1201 cgatgccgct cacgatcgcg ccgttggaat ctttgaccgt gcctttgatc ctgccttcag
     1261 actcttcggt cacagccatc gccgaaacag ccgaagcaaa cacgcaatac agcaggacag
     1321 tgagtaatcg tttcataatc tttcctggag gggatcccac gaacaatagg gacgacgaca
     1381 atatcgccgc ggctgaacta ctaccagccg tcgtaatctt tttagcttta gcttcgggga
     1441 cttaactgag gaaatgaacg acgtgttcga cgagttgatg cacggcggca agcacttgcg
     1501 ggcggctttc gatcatcacg ctgataacta ccaaaaccgt gagcgccgtc cacggcagga
     1561 aacgaaccaa aggcgcgctg ctaaccagca accgcggatc accgcccgcg agttcgacca
     1621 ggcggcgaac gcgaactctc acacgcggca cgtcgtcatt gcccgcaaga aaagcggaaa
     1681 ccgacgcggg catgatctgc tgttggccct tgggaatcat cttcgcgatc
//
LOCUS       DASWTX010000247         1883 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_307414, whole genome shotgun sequence.
ACCESSION   DASWTX010000247 DASWTX010000000
VERSION     DASWTX010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1883
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307414"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..554
                     /locus_tag="VGD38_03865"
     CDS             <1..554
                     /locus_tag="VGD38_03865"
                     /inference="COORDINATES: protein motif:HMM:NF015722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SUMF1/EgtB/PvdO family nonheme iron enzyme"
                     /protein_id="HEY0727181.1"
                     /translation="LYWELHDTEWMIRDFTGLHSVDTRADEPVSHVSYYEASAFAKWA
                     GKRLPTEAEWEKAACYDAERKVKRRFPWGDTDPDSGNTNLFENGFWSVSPVGAFPGGS
                     NPYGCQQMIGDVWEWTTSDYVPYPGFKTEFDEYNDKWFVNQKVLRGGSFATPQSHIRT
                     TYRNFFHAHERWMLSGFRCARDL"
     gene            565..>1883
                     /locus_tag="VGD38_03870"
     CDS             565..>1883
                     /locus_tag="VGD38_03870"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004181 - metallocarboxypeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family zinc carboxypeptidase"
                     /protein_id="HEY0727182.1"
                     /translation="MSLKSLLRVLLVVCALAVSISAQTESRNTSSEEPGGTARTAPAR
                     TAPVNPKYTTPKSPLDTAYGAKIAEYTTEKYFMTELVDHLPLSDKVPSPEKILGYAIG
                     APNKLTYTKDLYRYYRALAGASPRVRILIAPEKSEEGREQMLVLISDEANLAKLDRYK
                     EITAKLADPRKLSETEAHTLITEGKPFYWASGSIHSPETGSPEMLMELAYRLAVEDSP
                     FIEDIRKNMIVMITPALEVDGRDRMVDLYYYRKANPGKPAPPLLYWGKYVAHDNNRDS
                     LGMALALSRNQMKTFLEYHPTVLHDLHESVPYLYTMTGTGPYTAWIDPLAIDEFQVLA
                     HYEIEEMTKRGVPGVWTHGFYDGWAPNYMLYIATGHNSIGRFYETFGNGGADTRERTL
                     GANQTSRVWYRPNPPFPRVNWSMRNNVNMQQSALLFAMNFVAREKER"
BASE COUNT          415 a          582 c          511 g          375 t
ORIGIN      
        1 cgctttactg ggagctccac gacaccgagt ggatgattcg cgacttcacc ggtttgcact
       61 cagtcgacac gcgcgcagac gaacccgttt cgcacgtcag ctactacgaa gcgtcagcct
      121 tcgccaagtg ggccggcaaa cgtctcccga cggaagctga atgggagaag gcggcgtgtt
      181 atgatgctga acgcaaagtt aagcgtcgtt ttccgtgggg cgacaccgat cccgatagcg
      241 gcaacaccaa ccttttcgaa aacggtttct ggtcagtttc gcccgtgggt gcttttcccg
      301 gcggctccaa tccttacggt tgccagcaga tgattggcga cgtttgggaa tggacgacct
      361 cggattacgt tccgtatccg ggattcaaga cggagtttga cgaatacaac gacaagtggt
      421 tcgtcaatca aaaggttttg cgcggcggct cgtttgccac gccccaatcg catatcagaa
      481 cgacgtacag aaacttcttt cacgcgcacg aacgctggat gctttccggt ttccgctgtg
      541 cgcgtgatct ctaaggagcc catcatgtcc ctaaaatccc ttcttcgtgt cttgctcgtc
      601 gtgtgcgctt tggctgtgtc gatctccgca cagactgagt cgcgcaacac gtcttctgaa
      661 gagcctggtg gcactgctcg aacagcaccc gcgagaaccg cgccggtcaa cccgaaatac
      721 acgacgccaa aatctccgct cgacaccgcg tacggcgcga agatcgccga gtacacgacc
      781 gagaagtact tcatgaccga gctggtggac cacctgccgc tttcggacaa ggttccttcg
      841 ccggagaaga tcctgggcta cgccatcggc gcgccaaaca agttgaccta cacgaaagat
      901 ctctaccgct actatcgcgc gctcgccggc gcctcgccgc gcgtgcgcat cttgatcgcg
      961 ccggaaaaga gcgaagaggg acgcgagcag atgctcgtgc tcatcagcga cgaagcaaat
     1021 ctcgccaaac tcgatcgcta caaagaaatc acggccaaac tcgccgatcc acgcaagctc
     1081 agcgaaactg aagcccacac gctgatcacc gaaggcaaac ccttctactg ggcctccggt
     1141 tcgattcact cgccggaaac cggctcgccc gagatgttga tggagctggc ctatcgtctc
     1201 gcagtcgaag attcaccgtt catcgaagac attcgcaaga acatgatcgt gatgatcacg
     1261 cccgcgctcg aagtcgacgg ccgcgatcgc atggtggatc tctactatta ccgcaaagca
     1321 aacccgggca aacccgcgcc gccattgctc tactggggca agtacgtcgc gcacgacaac
     1381 aaccgcgaca gtctcggcat ggcgctcgcg ctctcgcgca accagatgaa gacgtttctc
     1441 gagtatcacc cgaccgtgct tcacgatctg cacgagtcgg tgccttatct ctacacgatg
     1501 acgggcacgg gtccatacac cgcgtggatc gatccgctcg cgatcgacga gtttcaggtg
     1561 ttggcccatt acgaaatcga ggagatgacg aaacgcggtg tgcccggtgt ttggacgcac
     1621 ggtttttacg acggctgggc gccaaactac atgctctaca tcgccaccgg tcacaactcg
     1681 atcggccgtt tctacgagac tttcggcaac ggcggcgctg acacgcgcga acgcaccctc
     1741 ggcgcgaatc agacgtcgcg tgtttggtat cgtccgaatc cgccgttccc gcgcgtcaac
     1801 tggtcgatgc gcaacaacgt gaacatgcag cagtcggcgc tgctcttcgc catgaatttt
     1861 gtggcgcgcg aaaaagaacg ttt
//
LOCUS       DASWTX010000248         3140 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_2433, whole genome shotgun sequence.
ACCESSION   DASWTX010000248 DASWTX010000000
VERSION     DASWTX010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3140
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2433"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(250..945)
                     /locus_tag="VGD38_03875"
     CDS             complement(250..945)
                     /locus_tag="VGD38_03875"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0727183.1"
                     /translation="MNEKPRNLVVDDEPQLTRVLRTGLGARGYDVRAAADGLSGFETF
                     TDWHPDLVITDLAMPVMDGLELCRRVRAISPVPIIVLSAKGEEKTKVEALDIGADDYI
                     TKPFGIDELLARVRASLRRAATVVSAEPESTVLTAGDFHIDLETRQVLVAEREVHLTP
                     KEFDLLVYFVKHSGKVLTHRTLLAAIWGGNYVEQNEYLRVFVGNLRKKLAPDPTTPRY
                     ILTEPWIGYRFNP"
     gene            complement(945..2084)
                     /locus_tag="VGD38_03880"
     CDS             complement(945..2084)
                     /locus_tag="VGD38_03880"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4118 domain-containing protein"
                     /protein_id="HEY0727184.1"
                     /translation="MVLKIPSFRSLASAFLGIAAVTALLIPFREQINSTTTALVYLLV
                     VLFVALFWGSGPALVASVVAVLCFNFFFLPPFYTFHVAHLENWIALFAFFTTALAVGQ
                     LSAREKRRAEEAKRGEREIERLYKELQAAFERASQAEALKQSERLKSALLDAVTHDLR
                     TPLTSIKASITTLIDEARAPEFALDKESRREMLEVIDEESDRLNRFISGLIDLARIDA
                     GELQLRRQWGVIDEIVSTALARAQPLTQEHEVEVKIDKELPALRVDERAVSEVVYTLI
                     DNAAKYSPRGSKIRITAGVSDGMIEMAVEDQGPGVPAALRERVFDKFFRATRDGDVRT
                     HQPSGTGMGLAIAKGIVEAHEGKIWIESAADGHGARVVFTLPVGE"
     gene            complement(2097..>3140)
                     /locus_tag="VGD38_03885"
     CDS             complement(2097..>3140)
                     /locus_tag="VGD38_03885"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0727185.1"
                     /translation="RTGGNVNDFMDITLKRLIDGGQQAGPAIDATAPYLNGPNSFLQM
                     YPLKDAEDAKRHVAYWASVGATSFKAYMNITRDQLRAVVEEAHKRGLKVTGHLCSVGF
                     REAAEIGIDNLEHGLFADSEFVADKKPDQCPQGVSASLRQLDLNSPAVQETIRTLVQK
                     NVAITSTLPVFEAGQAPLAQSGIGAASALLNQRMLNVMSTDARVRYLQNRARVSSTGD
                     FVALLRKAMDFERAFVKAGGLLIAGLDPTGNGGIVAGFGDHRQVELLVEAGFTPVEAI
                     QIASLNGAKFLGEDARIGSVAPGKQADLMVVKGNPAANIMDIEKVEIVFKDGVGYDSE
                     KLIQSVQGLVGIR"
BASE COUNT          655 a         1008 c          849 g          628 t
ORIGIN      
        1 gtttttgatt caggatctgc aaacgccgaa ggcgttcgct aatttcagcc catggttgga
       61 gcgtagcgat aaccatggga ccagccaccg ccactcgcgt gcaaccctga aagggttagc
      121 gagtattgcg cgtgagttcg ccaacgcttt cagcgtttaa cttcgtccgg gaaactgtcc
      181 cccagggttg aagcaaccct gggctcgaac ttacgaacgc cttcggcgta atcgattcat
      241 ggttcgaggt tacgggttga agcggtagcc gatccacggc tcggtgagga tatagcgcgg
      301 cgtggtgggg tcgggtgcga gttttttgcg gaggttgccg acgaagacgc gcaggtattc
      361 gttttgttcg acgtagttgc cgccccagat ggcggcgagg agggtgcggt gcgtcaggac
      421 tttgcccgag tgtttgacga agtagaccag gagatcgaat tctttcggcg tgagatggac
      481 ctcgcgctca gcaaccagaa cttgtcgcgt ttcgagatcg atgtgaaagt cgccggcggt
      541 caagactgtc gattctggtt cggcactcac aacagtcgca gcgcggcgca acgaagcgcg
      601 gacgcgcgcg agtagttcgt cgatgccgaa gggtttcgtg atgtaatcgt cggcgccgat
      661 atcaagcgct tcgaccttcg ttttctcttc acccttagca gacaggacga tgatgggcac
      721 cggtgagatt gcgcgcacgc gccggcagag ttcgagacca tccatcaccg gcatcgcgag
      781 atccgtgatc acgagatcgg gatgccagtc ggtgaacgtt tcaaaaccgg aaagaccatc
      841 cgcggctgcg cggacgtcgt aaccgcgcgc acccagaccc gtacgcaaca cacgcgtcag
      901 ttgcggctcg tcatcgacga ctaaattgcg cggcttctcg ttcattattc ccctaccggt
      961 aacgtgaaga cgactcttgc gccgtgtcca tccgcggcgg attcaatcca gattttacct
     1021 tcgtgtgctt cgacaattcc cttcgcgatc gccagcccca ttcctgtccc cgacggctgg
     1081 tgcgtcctga cgtcgccgtc gcgggtcgcg cggaagaact tatcaaaaac acgctcgcgc
     1141 aacgcagccg gcacgcccgg gccctgatct tccaccgcca tctcgatcat gccgtccgac
     1201 acgcccgcag tgatcctgat cttcgagccg cgcggtgaat acttcgccgc attgtcgatc
     1261 aacgtgtaga ccacttcgct caccgcacgc tcgtcaacac gcagagccgg caactcttta
     1321 tcgatcttca cttcgacttc atgctcctgc gtcagcggct gtgcgcgcgc gagtgccgtc
     1381 gaaacgatct cgtcgatcac accccactgc cgccgcagtt gcaactcacc cgcatcgatg
     1441 cgcgccagat cgatcaggcc gctgatgaag cgattgagcc ggtcgctctc ctcgtcgatc
     1501 acttccagca tttcccggcg cgactctttg tcgagcgcaa actccggcgc gcgcgcttcg
     1561 tcgatcagcg tcgtgatcga cgctttgatc gacgtcaacg gcgtgcgcag atcgtgggtc
     1621 acggcgtcga gcagcgccga cttcaaccgt tcactttgct tcaacgcttc cgcctggctg
     1681 gcgcgttcaa acgccgcttg cagctctttg taaagccgct cgatctcgcg ctcgccgcgt
     1741 ttcgcttctt cggcgcggcg cttctcacgc gccgaaagtt ggcccacagc gagtgctgtc
     1801 gtgaagaatg caaacaacgc gatccagttc tcaagatgcg cgacgtgaaa ggtgtaaaac
     1861 ggtgggagaa agaagaagtt gaaacagagc acagcgacga cagaggcaac gagcgccggc
     1921 ccgctgcccc aaaacagcgc tacgaataga actacgagca gataaacaag ggccgtcgta
     1981 gtcgagttga tctgctcgcg aaacggtatc aggagagcgg tgaccgctgc gatcccgagg
     2041 aacgcgcttg ctaaagatct aaaggaaggg atttttaaaa ccaacttaaa agccaattaa
     2101 cggatgccga ccagcccctg caccgactgg attagcttct ccgaatcgta accgacaccg
     2161 tccttgaaaa cgatctcaac cttctcgatg tccataatgt tcgcagccgg gtttcccttc
     2221 accaccatca agtcagcctg ctttccgggc gcgacggagc cgatgcgcgc gtcttcgccg
     2281 agaaacttcg cgccgttcag actcgcgatc tgaatcgcct caaccggcgt gaagcccgcc
     2341 tcgaccagca actccacctg acgatgatcg ccaaaacccg ccacgatccc gccgttgccc
     2401 gtcggatcga gtcccgcaat caacaacccg cccgccttca caaacgcacg ctcaaaatcc
     2461 atcgccttcc gcaacaacgc cacaaagtcc cccgtcgaag acacacgcgc acggttttgc
     2521 aaataacgaa cacgcgcatc agtcgacatc acattcagca tgcgctgatt caacaacgca
     2581 ctcgcggcgc cgatcccact ctgcgcaagg ggcgcctgcc cggcttcaaa caccggcaac
     2641 gtcgacgtga tcgccacatt cttctgcacg agcgtgcgaa tcgtctcctg caccgccgga
     2701 ctgttcagat ccaactgccg caaactcgca ctcacaccct gcggacactg gtccggtttc
     2761 ttgtccgcaa cgaactccga atccgcaaac aatccgtgct cgagattgtc gatcccaatc
     2821 tccgccgctt cgcgaaaacc aaccgaacag agatgtcccg tcaccttcaa cccgcgcttg
     2881 tgcgcttctt caaccaccgc gcgcaactga tcgcgcgtga tgttcatgta ggccttgaac
     2941 gacgtggcgc cgacgctcgc ccagtaggcg acgtggcgct tcgcatcctc cgcgtccttg
     3001 agcggataca tctgaaggaa agaattcggc ccgttgagat agggcgcggt cgcgtcgatc
     3061 gccggaccgg cctgctggcc gccgtcgatc aaccgcttca gcgtgatgtc catgaagtcg
     3121 ttcacgttgc cgcccgttct
//
LOCUS       DASWTX010000249         3343 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_393792, whole genome shotgun sequence.
ACCESSION   DASWTX010000249 DASWTX010000000
VERSION     DASWTX010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3343
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_393792"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..562
                     /locus_tag="VGD38_03890"
     CDS             <1..562
                     /locus_tag="VGD38_03890"
                     /inference="COORDINATES: protein motif:HMM:NF012263.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome b N-terminal domain-containing
                     protein"
                     /protein_id="HEY0727186.1"
                     /translation="TKADAFRDILYLEHDVPFGKLLRNMHRWAAHLMVITTWLHMFRV
                     VLTGSYKKPREFNWCVGVVLLVLTLLLSFTGYLLPDDQLGFWAVTVGTNMARATPMLG
                     HDGPFGPQLGMTAYNDVRFGLLGGSIVDANALLRSYIWHCIGIPLVASIFMAVHFWRI
                     RKDGGISGPAPVVLESEMKAVTKKKS"
     gene            562..1689
                     /locus_tag="VGD38_03895"
     CDS             562..1689
                     /locus_tag="VGD38_03895"
                     /inference="COORDINATES: protein motif:HMM:NF012262.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727187.1"
                     /translation="MKRFVNKWTIWGALIVIAAIWALMVKDWNQLWKISSAPDNVPIV
                     AMLFLVPFFTWLGIKQAVANDKLVEQLEADPKLAKTHHRKVEPWRPGWAREVHVWPYL
                     VRVEFLATVIVTVILFIWSITLNAPLEEPANPNLTMNPSKAPWYFLGLQEMLVYFDPW
                     IAGVVMPSIIMVGLMVFPYVDSNPLGNGYYTLRQRRFALWMFGAGFFQWIVLIVIGTF
                     IRGPGWIWFWPGQTWDHNAVVFDKNVDLHDMIIQSKIGKTLGLGILGQEPYYVPFKII
                     FGLIIVTGFFILGALFFHWLMTVDFKKLRFPRSLSLNELHSALFPKNEFEQKILQRTS
                     LLQYLTFQFFAISVLLALPVKLVLRLAFTIKYVWVTPWFNI"
     gene            1712..>3343
                     /locus_tag="VGD38_03900"
     CDS             1712..>3343
                     /locus_tag="VGD38_03900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727188.1"
                     /translation="MADSPAPGESLVKREPELPANDPIVSRSTSGWMLVSALLMTISI
                     AWALYDEAFGQRPWKGMQQEFVARYGRYLDSIKANAGKSEKEIKESPEYQQLDEEVKA
                     AEAQAKPEIDRIDAEVKSIQRKLNAVTEPFQDQRGRLTVINYNIETAKDSAKERYRRQ
                     AEAKKQETIEVDLPNDDGSAVEAKEFKYADLEALYDQLRDEKAKKLATIAELAKPSAD
                     ARKKRDDYLKNQLIGLDPNAIDSLRNGLAKYDYSILGHQISVGAYDIVDRCEVCHAGI
                     RQPLELTPASLAPDKPGGEPDKLARAFVSHPKEIFQTHNPEKFGCASCHWGNGRATTS
                     ETKGHGRHRFWLWPMFEKENTEAGCQQCHARDRVTDGAETLNLGRDLFSERGCMGCHR
                     YEGFDRETDALASARQQIGQLDDQMTANEKQIRADTQRSGEVEDNDEAQRLLAHAESL
                     RVTNSLLAARKDQLNLQTKYLMQDQKKVGPNLKDVRVKLRKEWVPYWLENPQAFRPGT
                     KMPTFWRFAAPLDAAHGELRDKDAPQQIQAIAAYLW"
BASE COUNT          745 a          902 c          982 g          714 t
ORIGIN      
        1 gacgaaggcg gatgcgtttc gcgacattct ttatctcgaa cacgacgtgc cgtttggcaa
       61 gctcttgcga aacatgcatc gctgggccgc gcacctgatg gtgatcacga cctggctgca
      121 catgtttcgc gtggtgttga ccggctccta caagaaaccg cgtgagttta actggtgtgt
      181 cggcgtcgtg ctgctggtgc tgacgctgct cctgtccttt acgggctatc tcttaccgga
      241 cgatcagctc ggtttctggg cggtgacggt aggaacgaac atggctcggg ccacgccgat
      301 gctcggtcac gatggtccat tcgggccgca actcggaatg accgcctaca acgacgtgcg
      361 tttcggattg ctcggcggat cgatcgtgga cgcaaatgca ctgctgcgtt cctacatctg
      421 gcactgcatc ggtattccat tagtcgcgtc gatcttcatg gcggtgcatt tctggcgcat
      481 tcgtaaggac ggcggcattt ccggtcccgc gccagtcgtg ctcgagtcag aaatgaaggc
      541 ggtcaccaag aagaagagtt aatgaaaaga ttcgttaaca agtggacgat ttggggggcg
      601 ctgatcgtaa tcgccgcaat ctgggcgttg atggtcaaag actggaatca gctttggaag
      661 atatcctccg ctcctgacaa cgtgccgatc gtggcgatgc tgtttctcgt gcctttcttt
      721 acctggctgg gcatcaagca ggcggtcgcc aacgataaac tcgtcgaaca gctcgaagca
      781 gatccaaaac tcgccaagac gcatcaccgc aaagtcgagc cgtggcggcc gggctgggcg
      841 cgtgaggttc acgtgtggcc gtatctggtg cgcgtggaat ttctggcgac ggtgatcgtg
      901 accgtgattc ttttcatctg gtcgatcacg ctcaacgcgc cactcgaaga acctgccaat
      961 ccaaacctga cgatgaatcc ctcgaaagcg ccgtggtact tcctcggtct tcaggagatg
     1021 ctcgtctact tcgatccgtg gatcgccggc gtcgtgatgc cgtcgatcat catggtcggt
     1081 ttgatggtgt ttccgtacgt cgattcgaat ccgctcggca atggttatta cacgttgcgg
     1141 cagcggcggt tcgcgctgtg gatgtttggc gccggttttt tccagtggat cgtgctgatc
     1201 gttatcggca cgtttattcg tgggccgggc tggatctggt tctggcctgg acagacgtgg
     1261 gatcacaacg cggtcgtgtt cgataagaac gtcgacctgc acgacatgat tatccagagc
     1321 aagatcggaa agactttggg tcttggaatt ctcggccagg aaccatacta cgttccgttc
     1381 aagatcattt ttggtctgat catcgtcact ggctttttta tcctgggcgc actgtttttc
     1441 cactggttga tgacggtgga cttcaagaag ctacgcttcc cgcgaagctt gagtcttaac
     1501 gagcttcaca gtgctctgtt tcccaaaaac gagttcgagc agaagattct tcaacgcacg
     1561 agcctgttgc agtatctgac gttccagttc tttgccatta gcgtgttgct tgcgctgccg
     1621 gtgaaactgg tcctgcgatt agcgtttacg atcaagtatg tgtgggtgac tccctggttc
     1681 aatatctgac aaaggcggag ggacgaacac agtggctgat tctccagcac cgggcgaatc
     1741 attagtcaaa agagaaccgg agttaccggc caacgatccg atcgttagca ggtcgactag
     1801 cggctggatg ctcgtcagcg cactgctgat gacaatctcg atcgcgtggg ccttgtatga
     1861 cgaagcgttc gggcagcggc catggaaggg aatgcagcag gagttcgttg ctcgctatgg
     1921 ccgttatctc gacagcatca aggcgaatgc gggcaagtcg gaaaaggaaa tcaaggagag
     1981 tccggaatac cagcagctcg acgaggaggt taaagccgcc gaggcgcagg cgaaacccga
     2041 gatcgatcga atcgatgccg aagtgaaaag cattcagcgg aagctgaatg ccgtcaccga
     2101 gccctttcaa gaccaacgtg gccgcctgac agtcattaat tacaacatcg agaccgcaaa
     2161 ggactccgcc aaagaacgtt accgccgcca ggctgaagcc aagaaacaag agactattga
     2221 ggtcgatctg ccgaatgatg atggcagtgc ggtagaagcg aaagagttta agtacgccga
     2281 tctggaagcc ctctacgacc agttgcggga cgaaaaggcg aaaaagctcg ccaccattgc
     2341 cgaactggcg aaaccgtctg ccgacgcccg gaagaaacgc gacgattatc tgaaaaacca
     2401 gctaatcggg ctggacccga atgcgattga cagtcttaga aacgggctgg ccaagtacga
     2461 ttattccatc ctgggccatc agatcagcgt cggcgcgtac gacatcgtcg atcgctgcga
     2521 agtttgtcac gccggcatca ggcaaccgct cgaactgacg cccgcgagtc tggcgccgga
     2581 taagccaggc ggtgaaccgg acaagctggc gcgcgctttc gtaagtcatc ccaaagaaat
     2641 ctttcagact cataatcccg agaagtttgg ctgcgcgagt tgtcactggg gcaacggtcg
     2701 agcgacgacg agcgaaacca aaggtcacgg acgtcatcgt ttctggctct ggcccatgtt
     2761 cgagaaagag aacaccgagg ccggatgcca gcagtgtcac gcgcgcgatc gcgtcaccga
     2821 cggcgccgag accttgaacc tcggccgcga tctcttctcg gaacgcggtt gtatgggttg
     2881 tcatcgttac gaaggcttcg atcgcgagac tgacgcgctc gcttcagcgc ggcaacagat
     2941 cggccagctc gacgatcaga tgacggccaa cgaaaagcag attcgcgccg acacgcagcg
     3001 ttcgggtgaa gtcgaggaca acgacgaggc gcaacgcctg ttggcccatg ccgagagtct
     3061 tcgcgttaca aacagtttgc tggccgcgcg caaggatcag ctaaacctgc aaacgaagta
     3121 cttgatgcag gaccagaaaa aggttggccc aaacctgaaa gacgtccgcg tgaagctgcg
     3181 caaagagtgg gtgccttact ggctcgagaa cccgcaagcg ttccgtcccg gcaccaagat
     3241 gccgacgttc tggcgtttcg ccgcgccgct cgacgccgct cacggtgagc tgcgcgacaa
     3301 ggatgcgcca cagcagatcc aggccatcgc cgcttatctc tgg
//
LOCUS       DASWTX010000250         1674 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_307448, whole genome shotgun sequence.
ACCESSION   DASWTX010000250 DASWTX010000000
VERSION     DASWTX010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1674
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307448"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            156..>1674
                     /locus_tag="VGD38_03905"
     CDS             156..>1674
                     /locus_tag="VGD38_03905"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0043138 - 3'-5' DNA helicase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecQ"
                     /protein_id="HEY0727189.1"
                     /translation="MDSLSDAATSLRTHFGFDNFREGQREVIESILAGKDVVVVMPTG
                     SGKSLCYQLPAMILDGVTLVVSPLIALMKDQVDALQARGLPATFINSSIPETEQRARI
                     ESLRRREHKLVYIAPERFRSSRFNAALQSIPISLFAVDEAHCISTWGHDFRPDYLRLK
                     HVIRSLGNIRTLALTATATPYVRSDIVQQLGLEKPQTFVSGFDRPNLRIEVVHTEKER
                     EKITRIKRLAQSHEGSGIVYASTRKAVEQVGRELTKAGLRVSMYHAGMSDAVRVRAQE
                     EFMSGRTQMIVATNAFGMGIDKSDIRFVAHYQMPGSIEAYYQEIGRAGRDGLPSTCVL
                     LFNYADKNTHDFFIEGSYPDLALVKSVYNALLRTELKQIQLSTSEIAHLAQEKNELAI
                     NSALYLLERAGHIERTAASRAENGRRQSRTIVMLDTSPLRVDPRHVSGRADLERRKLR
                     ELIEFCYTEECYRSHILKYFGDRNRTRECGTCGNCQPATEVRYREPQREEISNTNL"
BASE COUNT          382 a          553 c          441 g          298 t
ORIGIN      
        1 cacaaactca atctcacgag gcgaaaacgg ctgcaccaac acccacaaca acaacacaga
       61 cttcaaaccc aacacgccca atccccgaaa cattgcgtcg cctgttaaca tgtgccccga
      121 gttatcagcc gcgttcaacc gaataagact ctttcatgga ttctctctca gacgcagcca
      181 cttcccttcg cacgcatttc ggcttcgaca acttccgcga aggccaacgt gaagtgatcg
      241 agtcgatcct cgcgggcaaa gacgtggtcg tcgtgatgcc caccggcagc ggcaaatcgc
      301 tctgctacca actaccggcg atgatcctcg acggcgtcac cctcgtcgtc tctccgctca
      361 tcgccctcat gaaagatcag gtggacgcac tgcaagcccg cggcctgccc gcgacgttca
      421 tcaacagctc gatccccgaa acggaacaac gcgcgcgcat cgagtcactg cgccgccgcg
      481 aacacaaact cgtctacatc gcacccgaac gtttccgcag cagccgcttc aacgccgcgc
      541 tgcaatcgat cccgatctcg ctcttcgccg tcgacgaagc gcattgcatc tcgacgtggg
      601 gccacgactt tcgcccggac tacctgcgcc tgaaacacgt cattcgctcg ctcggcaaca
      661 tccgcacact cgcactcacc gccaccgcga cgccgtacgt tcgctctgac atcgttcaac
      721 aactcggcct cgaaaaaccg caaacgttcg tcagcggttt cgatcgcccc aacctgcgga
      781 tcgaagtcgt gcataccgag aaagagcgcg agaagatcac gcgcatcaaa cgcctggccc
      841 agtcgcacga aggctccggg atcgtttacg cctcgacgcg caaggcagtc gaacaggtcg
      901 gacgtgaatt gaccaaggcg ggcttgcgcg tgtcgatgta tcacgccggc atgagcgacg
      961 ccgtgcgcgt ccgcgcgcag gaagagttca tgagcggccg cacgcagatg atcgtggcga
     1021 caaatgcgtt tggcatgggc atcgacaaaa gcgacatacg cttcgtggcc cactaccaga
     1081 tgcccggttc gatcgaggct tactaccagg agatcgggcg cgccggccgc gacggtttgc
     1141 cgtcgacgtg cgtcctgctc ttcaactacg ccgacaagaa cacgcacgac ttctttatcg
     1201 aaggctcgta tcccgatctc gcattggtaa agagcgtcta caacgcgttg ttgcgtaccg
     1261 agctgaagca gattcaactc tcaacgtcag agatcgcgca cctggcccag gagaagaacg
     1321 agctggcgat caattcagcg ctctacttgc tcgagcgcgc cggtcacatc gagcgcacgg
     1381 cagccagtcg cgcggaaaac ggcaggcggc agagccgcac gatagtgatg ctcgacactt
     1441 ctccgttgcg tgtcgatccg cggcacgtct cgggacgagc cgatcttgaa agacggaagc
     1501 tgcgcgagtt gatcgagttc tgctacacgg aagagtgcta tcgctcgcac attctcaagt
     1561 acttcggcga tcgcaatcgc acgcgagagt gcggcacgtg cggcaactgc caacccgcca
     1621 ctgaagttcg ctatcgtgag ccgcagaggg aggagatttc taatacaaat ttac
//
LOCUS       DASWTX010000251         2860 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_350770, whole genome shotgun sequence.
ACCESSION   DASWTX010000251 DASWTX010000000
VERSION     DASWTX010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2860
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_350770"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..526)
                     /gene="pth"
                     /locus_tag="VGD38_03910"
     CDS             complement(<1..526)
                     /gene="pth"
                     /locus_tag="VGD38_03910"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: protein motif:HMM:NF013368.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEY0727190.1"
                     /translation="MLIVGLGNPGSDYAATRHNLGFMLIDKLAEDERIVVKRRECNSI
                     VGQGTIEGVVTKLAKPLTFMNLSGGAVSCLLQKVESDTPVRQLVVISDDLALPLGKIR
                     IRERGSAGGHNGLKSIIAAIGTDEFIRLRIGIQPEHPLADAKRFVLDTFSKSERTVVA
                     EVLDQGANAIRTIIR"
     gene            complement(530..1195)
                     /locus_tag="VGD38_03915"
     CDS             complement(530..1195)
                     /locus_tag="VGD38_03915"
                     /inference="COORDINATES: protein motif:HMM:TIGR00731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HEY0727191.1"
                     /translation="MAEKKEYKVQATLRLGRGKNDARRARRDGMVPITVYGGGAETVA
                     AVAPLRDLAAILRSESGRNTIFTIEVDGMGASEVMFHDRQIDPIKGRLIHADLTRLVK
                     GQKIEVTVPLHLIGEPIGVKDNAGVLEQIVREIEIKCQPREIPDSLDVDVAHLDVHDV
                     LHVSDIKVAEGIEILTDPELVITTVGIVKEEEVAAAPAEGEEPAEPEVIGKGKKDEEG
                     EGD"
     gene            complement(1285..2232)
                     /locus_tag="VGD38_03920"
     CDS             complement(1285..2232)
                     /locus_tag="VGD38_03920"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016445698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009156 - ribonucleoside monophosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009165 - nucleotide biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HEY0727192.1"
                     /translation="MSTTSGIKIFSGNANPKLAEEICRQLTCDMGRAYPERFSDGEFN
                     FQIDENVRGGDVFIVQPTCPPTDAHLMELLVMIDAFRRSSAERITPVIPYYGYGRSDK
                     KDRPRVPISAKLVANLITVAGAHRLLAMDLHAAQIQGFFDIPVDHLYAAPVFIGYYQE
                     HPLPNLTVVAPDTGGAERARAYAKRLDAELALCDKRREKANVAEVMNVVGDVRGRSCL
                     IVDDMCDTGGSLTKVARALKDAGAERIHACFTHPVFSGRAVELLAESDIEKIIVTNTI
                     PLRDHACQLDKIKVLSIAPLLAKAIKSIHEETSVSSLFV"
     gene            complement(2256..2330)
                     /locus_tag="VGD38_03925"
     tRNA            complement(2256..2330)
                     /locus_tag="VGD38_03925"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2296..2298),aa:Gln,seq:ttg)
     gene            complement(2321..>2860)
                     /locus_tag="VGD38_03930"
     CDS             complement(2321..>2860)
                     /locus_tag="VGD38_03930"
                     /inference="COORDINATES: protein motif:HMM:NF020133.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727193.1"
                     /translation="GLSASDLKQIGSQLGADVPFFFAGGTAAATGTGTTIEEVSDVPR
                     QYLIIITPNASVSTATAYTSLNAPSLTTPNSVSILSSSFTEPFSGDSSQWPLHNDFEG
                     VIFEIEPEIRRAKLALLDAGARAALLAGSGSSVFGIFSDEAARDQALTNVRCEAGWRV
                     FACHTLSRSDYCQAISTGA"
BASE COUNT          626 a          869 c          732 g          633 t
ORIGIN      
        1 ccctgatgat cgttcgtatc gcgttcgcgc cctggtccaa tacttctgct accactgttc
       61 gctcgctctt cgaaaacgtg tcgagcacga accgtttcgc atccgcaagc ggatgctctg
      121 gttgtatacc gatccgcaac ctgatgaact cgtcagtgcc gatcgcggca atgatcgact
      181 tcaaaccgtt atgaccacct gccgagccgc gttcgcgaat gcgaatcttt ccgagcggca
      241 aggcgaggtc gtctgaaatc actaccaact gtcttaccgg cgtgtcgctt tcaacctttt
      301 gcagcaggca ggaaactgct ccgccactca ggttcatgaa cgttagcggt ttcgcgagtt
      361 tcgtgaccac accttcaatc gtgccctggc ccacgatcga attgcactcg cggcgcttaa
      421 ccacgatccg ttcatcttcc gccagtttgt caatcaacat gaacccgagg ttatgacgcg
      481 tcgcagcgta atcggatccg ggattgccaa gaccaacaat gagcaaaacc tagtcgcctt
      541 cgccttcctc gtccttcttg cccttgccaa tcacttcggg ctccgcgggc tcttcgcctt
      601 ccgccggcgc cgccgctact tcctcttcct tcacgatgcc cacggtcgta atgacgagct
      661 cggggtcggt caggatctcg atgccttcag cgaccttgat gtcggaaacg tgcagcacgt
      721 cgtgaacgtc gagatgcgcg acgtcgacgt cgagcgaatc aggaatctca cgcggctgac
      781 acttgatctc aatctcacga acaatctgtt cgagcacgcc cgcgttatcc ttgacgccaa
      841 tcggttcgcc gatcaggtgc aacggcacgg tcacttcaat cttctgtccc ttaaccaacc
      901 gtgtcaggtc agcgtgaatc aggcggccct tgatcggatc gatctggcgg tcgtgaaaca
      961 tcacttcact cgcgcccatg ccgtcgactt caatcgtaaa gatcgtgttt cgacccgact
     1021 cggaacgaag aatcgcagcc agatcgcgca acggcgccac cgctgctaca gtctccgcgc
     1081 ccccgccata gaccgtaatc ggaaccattc cgtcgcgccg cgcacgccgc gcatcgtttt
     1141 tgccacggcc caggcgcagc gtcgcctgca ccttgtactc ttttttctcc gccatgattt
     1201 ctccttacaa actttcagcg acccgtggac cagccacagg gtcgctgatg gtcttctata
     1261 agccatcagt gtttgccctt cgccttatac gaagagcgaa gagactgaag tctcctcgtg
     1321 gatcgacttg atcgctttcg ccagaagcgg cgctatactc aaaaccttga tcttatcgag
     1381 ctgacacgcg tgatcgcgca acggaatcgt attcgtcacg atgatctttt caatatccga
     1441 ttccgccagt aactcaacgg cgcggccgga aaacaccgga tgcgtgaaac acgcatgaat
     1501 tctttcagcg cctgcgtcct tcaacgcgcg cgctactttc gtgagcgacc cacctgtgtc
     1561 gcacatgtcg tcgacaatca aacaactgcg gccacgaacg tcgccgacga cattcatcac
     1621 ttccgccacg ttagcctttt cgcggcgttt gtcgcaaaga gcgagttccg catcgagccg
     1681 cttcgcataa gcgcgagcgc gctcggcgcc accggtgtca ggagccacaa ccgtcaaatt
     1741 cggcagcgga tgttcctgat aataaccgat aaagaccggc gcagcataaa ggtggtccac
     1801 cggaatgtca aagaagccct gaatctgtgc ggcgtgcaag tccatcgcca acaggcgatg
     1861 agcgccggcg acggtgatca gattcgccac cagcttggcc gaaatgggaa cgcgcgggcg
     1921 gtcctttttg tccgaccggc cataaccgta ataaggaatc accggcgtga tgcgctcggc
     1981 cgaagaacgg cgaaacgcgt cgatcatcac cagcagctcc atcaggtgcg catcggtcgg
     2041 cgggcaggtg ggctgcacga taaagacatc gccgccgcga acgttttcgt cgatctgaaa
     2101 gttgaattca ccgtcagaaa aacgttccgg gtaggcccta cccatgtcgc aggttagttg
     2161 gcggcaaatc tcttccgcca attttgggtt cgcatttccg gagaagattt tgatgccgct
     2221 ggttgtgctc attaccttat cgttatttta gaatttggct ggggcgggtg gattcgaacc
     2281 aacgaatgcc ggttccaaag accggtgcct taccacttgg ctacgcccca gtactgatgg
     2341 cctggcaata gtcgctacgt gaaagcgtgt ggcacgcaaa gactcgccag cctgcttcac
     2401 acctgacatt tgtaagagcc tgatctcgcg ccgcttcgtc gctaaaaata ccaaacacgc
     2461 tggaaccgct tccagccaac agcgcggcgc gcgcacccgc gtcaagcaac gccaatttcg
     2521 cacgcctgat ttcaggttct atctcaaaga tcactccttc aaaatcattg tgcagaggcc
     2581 attgactgct atcaccggaa aatggctccg tgaaggaact tgaaagaata gagaccgagt
     2641 taggagttgt caaggaagga gcatttaaag acgtgtatgc agttgcggtt gagactgatg
     2701 cgttgggagt gatgatgatc aggtactggc gaggaacatc agaaacttct tcgatcgttg
     2761 ttccggtgcc cgtcgccgca gcggtgccac cggcaaaaaa gaacggcaca tccgctccca
     2821 attggcttcc tatctgcttt aaatcggagg ccgacaggcc
//
LOCUS       DASWTX010000252         1770 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_393835, whole genome shotgun sequence.
ACCESSION   DASWTX010000252 DASWTX010000000
VERSION     DASWTX010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1770)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1770)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1770
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_393835"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1770
                     /locus_tag="VGD38_03935"
     CDS             <1..>1770
                     /locus_tag="VGD38_03935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727194.1"
                     /translation="QPLLIGRVAINQTHIAFTYAGKIWLVERSGGVAKRLTNTPNEET
                     SPVFSPDGKRIAFSRSNGNDWDVFIVAADGSGEPTRVTMMPEDDFVTAWSPDGEVIFE
                     TTRDEETLTRLYKTSAERLALATALPLHQSYSGSLSPDATRIVYNPRSGAGEWRYYRG
                     GYAAPLWVANLKTGALEKLSNGTYNDRNPQWLGDRIFFVSDRTGIFNLHTYDTKSKKT
                     DQLTKYTGGQGVRTASATNGAVVYVQGGRLHLLDLATNKDQVINVSVTPDTSELAART
                     VPAMRFLEQILPSATGDRVVFGVRGDVIVFDPANGSYKNLTNTPGVAERYPVISPDNK
                     TVAYVSDESGEYALHVRSLENDSVKKIRIEDKPSFYWSLAWSPDSRKLAFPDRRLGLW
                     AVDVAAESALRVDTSTYSAQQSWNANFSPDSRFLTYWKRMKNRAGAVFIYDLAQKKSF
                     PVTDGITHTESPVFDPNGKYLYFASSPNVGTTEFSWGVLNGIFANPLVVRRIHTLVLS
                     KDHPSPLLPNGQPNPDAKVTEIASPVKIDVDGLQSRIVNLPLPPRDYAQLTAGQPGKL
                     VMAVRDWSGDPGGPTGQTVYSFDV"
BASE COUNT          383 a          540 c          491 g          356 t
ORIGIN      
        1 caaccactcc tgatcggccg cgtcgccatc aaccaaacgc acatcgcgtt cacttatgcc
       61 ggaaagattt ggctggttga acgaagcggc ggcgtcgcga aacgtttaac caacacgccc
      121 aacgaagaaa cgagtcccgt cttctcgccc gacggcaaac gcatcgcgtt ctcgcgctcg
      181 aacggcaacg actgggacgt cttcatcgtc gcggcagacg gttccggcga gccaacgcgc
      241 gtaacgatga tgcccgaaga cgatttcgtt actgcgtggt cgcccgatgg agaagtcatc
      301 tttgaaacga cgagagacga agagacctta acgcgactct acaaaacctc agccgagcga
      361 ctcgctctgg caactgcgct cccgcttcac caaagctatt ccggttcgct atctcccgac
      421 gcgacgcgaa tcgtttacaa cccgcgctca ggcgcgggcg agtggcgcta ctatcgcggt
      481 ggctacgccg cgcctctctg ggtcgccaat ctcaaaaccg gcgcgctcga aaaactctcg
      541 aacggaactt acaacgatcg aaacccgcag tggttaggcg accggatctt tttcgtttcc
      601 gatcgcacgg ggattttcaa cctgcacacc tacgatacga agtcgaagaa gacagaccag
      661 ctcacgaagt acacgggcgg ccagggtgtc cgcactgcgt cggcaacgaa cggagccgtg
      721 gtttacgtgc agggcggccg gctgcacttg ctcgatctcg ccacgaacaa ggatcaagtg
      781 atcaatgttt cggtgacgcc cgacacgtca gagcttgctg cccgcaccgt ccccgcgatg
      841 cgtttcctgg aacagatact tccgtcggcg acgggcgatc gtgtcgtctt cggcgtgcgc
      901 ggcgatgtga tcgttttcga tccggcaaac ggctcttaca agaaccttac caacacgccg
      961 ggcgtcgccg aacgctatcc cgtgatctcg cccgacaaca agaccgtcgc ttatgtgtca
     1021 gacgaatccg gcgagtacgc gctgcacgtg cgttcactcg aaaacgattc cgtcaaaaag
     1081 atccgcatcg aagacaagcc gtcgttttac tggagcctcg cctggtcgcc tgattcacgc
     1141 aagcttgcgt ttcccgacag gcggctgggt ctgtgggctg ttgacgttgc tgccgaaagc
     1201 gcactccgcg ttgacacgtc tacttactcg gcacagcaat cctggaacgc aaacttctcg
     1261 cccgattcgc gttttctcac ttactggaaa cgcatgaaga accgcgcggg tgcggtcttc
     1321 atttacgacc tcgcgcagaa gaagagtttt ccggtgactg atggcatcac gcataccgag
     1381 agcccggtgt tcgacccgaa cggcaaatat ctttactttg catcgagtcc gaatgtgggc
     1441 acgaccgagt ttagctgggg cgtgttgaat ggaatattcg cgaatccgct cgtcgtcagg
     1501 cgcattcata cgctggtgtt gtcgaaggac cacccgtcgc cgctccttcc gaacggacaa
     1561 ccgaatcccg acgcgaaggt cacagagatc gcatcgccgg tgaagatcga tgtcgacggt
     1621 ttgcagtcac gcatcgtcaa tctgccgctt ccgccgcgcg actatgcgca gttaacagcg
     1681 ggacaaccag ggaagttggt catggcggtc agagactggt ctggtgatcc tggtggaccg
     1741 acagggcaga ccgtttattc tttcgacgtc
//
LOCUS       DASWTX010000253         2330 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_372271, whole genome shotgun sequence.
ACCESSION   DASWTX010000253 DASWTX010000000
VERSION     DASWTX010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2330
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_372271"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..424
                     /locus_tag="VGD38_03940"
     CDS             <1..424
                     /locus_tag="VGD38_03940"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HEY0727195.1"
                     /translation="KASAAAAKKTTEPSQNRRRGPRVHAHLPAAISLLEGGAQTGKAS
                     YSQPSRGHCEAISAYGMLLSLVGTRFPESELSRPGRMLFVRVDLPDASIEAVVTIVNH
                     QRASDGQKRWLLGVQTHQMSDADKELLTAYVERRLTAG"
     gene            477..1292
                     /locus_tag="VGD38_03945"
     CDS             477..1292
                     /locus_tag="VGD38_03945"
                     /inference="COORDINATES: protein motif:HMM:NF016952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminyl-peptide cyclotransferase"
                     /protein_id="HEY0727196.1"
                     /translation="MPLILKARLAIILALSVAGLQCNAGANSTAPTSNTSPPPAVAKH
                     GYEIVNAYPHDTGAFTQGLIFADGKLYEGTGQEGRSSLRQVDLQSGRVLKKVDLPQPF
                     FGEGITLLNGKIYQLTWQHKVGFIYDAQTLEKTGEFNFTGEGWGLTNDGRSLIISDGS
                     NRLKFLDPDSFRVTKTIAVTDGGTPITQLNELEYVNGEIYANIWHDQRIVTIDPQSGR
                     VTGWIDLRGLLQPGAVQDEEAVLNGIAFDPARNRLFVTGKLWPQLFEIKLKRL"
     gene            1304..>2330
                     /locus_tag="VGD38_03950"
     CDS             1304..>2330
                     /locus_tag="VGD38_03950"
                     /inference="COORDINATES: protein motif:HMM:NF023418.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3488 domain-containing protein"
                     /protein_id="HEY0727197.1"
                     /translation="MNFLTYFRALSYAMIGVAMLALVLAGGLDYGLALAFLVVMVVSW
                     KLEGTRWQLPERFGLAIVLLSIPLFYLDWHYQKRIGEPVERLGVTALAHLIVFLSAVK
                     LLQVKKDRDWVFLYLISFFEVLLAAGLSFSLMFLGTLSLYLLCGLAAVTAFEIQKARR
                     SLRHTETRLLVPPDSGVFKKGRRSWRNTESARLPLVALALLVLIFTFALPLFLIAPRS
                     GAAALTRSGGGLSNFIGFSESVTLGQIGTLKKDNGLVMRVRIEDVEPPRGLRWRGVAL
                     DEFTGNAWRKSPEARRPDPGVTERAGFLQLGTTEALHRLTTQTFFLETLESPVLFAAP
                     RVVALQGD"
BASE COUNT          477 a          750 c          645 g          458 t
ORIGIN      
        1 aaaagcttcg gctgccgcag ccaaaaagac gacagagccg agccaaaatc gccgccgtgg
       61 cccacgcgtc cacgcccatc ttccggccgc gatctccctg ctcgaaggcg gcgcgcagac
      121 cggcaaggcc tcgtattccc aaccctcacg cggacactgc gaagccatca gcgcctacgg
      181 catgctcctc tcgctcgtgg gcacgcggtt cccggaaagc gagctctcgc gccccggccg
      241 gatgttgttt gtccgcgtcg atctgccgga cgcctcgatt gaagccgtcg tcacgatagt
      301 caatcaccaa cgcgcaagcg acggtcagaa acgttggctc ctcggcgtcc aaactcacca
      361 gatgtctgac gccgacaagg aactgctcac ggcctacgtc gagcggcgcc taacagccgg
      421 ataaacccgc gagggctaaa ttgtgttttc cccgccggtc gcgcaaaatg ccttctatgc
      481 cactgattct caaggcgcga ctagccataa tccttgccct ttccgttgcc gggctccaat
      541 gcaacgcagg cgcaaattcc accgccccaa caagtaacac atcgccgccg cccgccgttg
      601 cgaaacacgg ttatgagatc gtaaacgcct atccccacga caccggcgcg ttcacccagg
      661 gcctgatctt cgccgacggc aaactctacg aaggcaccgg acaggagggg cgttcgagcc
      721 tgcgccaggt cgacctgcaa agcggccggg tgttgaaaaa agtcgatctt ccccaaccgt
      781 tcttcggcga aggcatcacg cttttgaacg gcaaaatcta ccagcttacg tggcaacaca
      841 aggtcggctt catctacgac gcccaaacac tcgaaaagac cggcgagttt aatttcacag
      901 gcgagggctg gggcctcacg aacgacggcc gttcgctcat catcagcgac ggcagcaacc
      961 ggctcaaatt tctcgatcca gacagctttc gcgtcacaaa aaccatcgca gtaaccgacg
     1021 gcggaacgcc cattacgcag ctcaacgagc tcgagtacgt caacggcgaa atctacgcca
     1081 acatctggca cgatcagcgc atagtgacga ttgatccgca aagcggtcgc gtgaccggct
     1141 ggatagactt gagagggttg ctgcaaccgg gcgcggtgca ggacgaagag gctgtgttga
     1201 acggaatcgc cttcgacccg gcccgcaacc ggttgtttgt caccggaaaa ctttggccgc
     1261 agttattcga gatcaagctc aagcgcctgt agtaagcacg taaatgaatt ttctgaccta
     1321 cttccgagcc ctttcctacg ccatgatcgg cgtcgccatg ctggcactcg tgctggcagg
     1381 aggcttggac tacggtctcg cgctcgcgtt cctcgtcgtg atggtcgtga gttggaagct
     1441 cgaaggcacg cggtggcaac tgcccgaacg cttcggcctc gccatcgtgt tgctctcgat
     1501 cccgctcttc tatctcgact ggcattacca gaagagaatc ggcgaaccag tcgaacgcct
     1561 cggcgtcacc gcgctcgcgc acctgatcgt tttcctgtca gcagtgaaac tcctgcaggt
     1621 caaaaaagat cgcgactggg tgtttctcta cctgatctct ttcttcgaag tgttactcgc
     1681 cgcaggactg agcttcagcc tgatgtttct cggcacgctg tcgctctatt tattgtgcgg
     1741 tctcgcagcg gtgaccgcct tcgagatcca aaaggcgcgt cgttcactgc gccacaccga
     1801 aacgcgcttg ctcgtgccgc ctgattcggg cgtcttcaag aagggccggc gaagttggcg
     1861 aaacaccgaa tctgcgcgct tacctttagt cgcgctggcg ctgctcgtgc tgatcttcac
     1921 gtttgccttg ccgttgtttt tgatcgcgcc gcgttccgga gcagcggcac tcacgcgcag
     1981 cggcggcggc ctgtcaaact tcatcgggtt ctctgaaagc gtcacgctcg gtcagatcgg
     2041 cacgctcaaa aaagacaacg gactcgtgat gcgcgtgcgc atcgaggacg tcgaaccacc
     2101 ccgcggtctg cgttggcgcg gcgtcgcact cgacgagttc acgggaaacg cgtggcgcaa
     2161 atcaccggaa gcgcggcgtc ccgatccggg cgttacggaa cgcgccgggt tcttgcagtt
     2221 aggcacgacc gaggccttgc accgtctcac gacgcaaaca ttctttctcg agacactcga
     2281 atcgccggtt ctattcgcgg cgccgcgtgt ggtcgctctg caaggcgatt
//
LOCUS       DASWTX010000254         1823 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_393855, whole genome shotgun sequence.
ACCESSION   DASWTX010000254 DASWTX010000000
VERSION     DASWTX010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1823
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_393855"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..333
                     /locus_tag="VGD38_03955"
     CDS             <1..333
                     /locus_tag="VGD38_03955"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0727198.1"
                     /translation="GYGNNARVLGRYVRELKLITLEDASRKMTSLPAQTCGFRDRGMI
                     REGFAADFVIFDENTIADQATFDKPHQFPVGISYVIVNGQTVLENGQMTAARPGVALR
                     GGGYGPGS"
     gene            609..>1823
                     /locus_tag="VGD38_03960"
     CDS             609..>1823
                     /locus_tag="VGD38_03960"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0727199.1"
                     /translation="MLAQEETAATVSGQVTDSTGAVVKAATVVITNDTTQQARTVQTN
                     DDGQFVLTPLLPGSYTLTVEQTNFKKHVESGITLNAKDRRSINVVLEVGNVSETVIVT
                     SEQNTVQDSPTGQTLISSTQVLEIPLQNRDFTKLLELVPGVSSSLDDETGFGLANRFD
                     VSINGMRRNGVNVFVDGVSNTDVGSNITLLSTPTIDSIKEFKVLTSNYTAEVGRSGGG
                     TVTLVTKGGENQFHGSLYDFARNDRFNANSFFNNRRGRNAAGNPLSPVPRLRYHNFGF
                     TLSGPVIIPRFGEGGPSVWSGKNKTFFFFSEEQRRITRGITEALATVPSVAERSGNFA
                     AALGLPLFRNSAGAGSSCTTPGVGTCTNTPLNVTDTNGNVIQARAGMIFRPADGRAYV
                     GNIIPQSDIHPVS"
BASE COUNT          399 a          525 c          515 g          384 t
ORIGIN      
        1 ggttacggca acaacgcgcg cgtgctcggc cgttacgtgc gcgagctgaa gttgatcacg
       61 ctcgaggacg cgagtcgcaa gatgacgtcg ttgcccgcgc agacatgtgg ctttcgcgac
      121 cgtggaatga ttcgcgaagg cttcgccgcc gacttcgtga tcttcgacga aaacaccatc
      181 gcggatcagg cgactttcga taagccgcac cagtttcccg tagggatcag ctacgtgatc
      241 gtaaacggcc aaacggtgct ggaaaacggt caaatgaccg cggcgcgtcc gggcgtcgcc
      301 ctgcgcggcg gcggctacgg tccaggttcg taattcagcg gtttttatgc catttggtac
      361 ggttgctata aacagactcg tgtgtaagaa tacgcgcact cgtttaacga ggctcggcct
      421 tctatccaac gacaattgct ttacctggct tgcaaaaaac catgcgtact gtggttctcc
      481 acaacgcccg ctccgattcg gagggcatgc ttccactaca actaaagagg attatcccca
      541 tgaaacgtca tttcatattt agggctgctt ttcttgcact ggcgcttgtg ttcgccctga
      601 gcggtacggt gctagcccaa gaggaaactg ctgctactgt cagcggtcag gtcactgact
      661 cgacaggcgc agtcgtcaaa gctgctaccg tcgtcataac caacgacacg acgcagcagg
      721 cgagaacggt gcagacgaac gacgacggcc agttcgtgct cacgccgctc ctcccgggca
      781 gctacacgct gacagtcgag cagaccaact tcaagaagca cgtcgagtca ggcattacgc
      841 tcaatgcgaa agaccggcgc tcgataaacg ttgtgctgga agtaggcaat gtcagcgaga
      901 cagttattgt cacgagcgaa cagaacacgg tgcaggatag tccgaccggg cagacgctca
      961 tttcaagcac gcaggttttg gagattccgc ttcagaaccg cgacttcaca aagttgctcg
     1021 agctcgtgcc tggcgtcagc tccagtctcg acgatgaaac gggttttggt ctggccaacc
     1081 gtttcgacgt ttcgatcaac ggcatgcggc gcaacggcgt gaacgtcttc gtcgatggcg
     1141 tttcaaacac ggacgtcggt tcgaacatca ctttgctttc gacgccgacc atcgactcga
     1201 tcaaagagtt caaagtgctg acttccaact acaccgcgga agtcggacgc tcgggcggcg
     1261 gaacggtaac gctcgtgacg aagggcggcg agaaccagtt tcacggctcg ctttacgact
     1321 tcgctcgcaa cgatcgtttc aatgccaact cgttcttcaa caatcgccgt ggacgcaacg
     1381 ccgcgggtaa tccactctct ccggttccga ggttgcggta tcacaacttc ggtttcactt
     1441 tgagcggtcc ggttatcatt cctcggtttg gcgagggcgg cccgtcagtg tggagcggca
     1501 agaacaagac cttcttcttc ttctcggaag agcaacgacg catcacgcgc ggcatcacgg
     1561 aagcgctggc cacagtgccg agtgttgctg aacgaagcgg caacttcgcg gctgctcttg
     1621 gactgccact gttcagaaac tctgccggcg ccggaagcag ttgtacgact cccggtgtgg
     1681 gcacgtgtac caacacaccg ctgaacgtca ccgatacgaa tggcaacgtg attcaggcgc
     1741 gcgctggaat gatcttccgg ccggcggacg gtcgcgcgta tgtcggcaac atcattccgc
     1801 aaagcgatat tcatccggtt tcg
//
LOCUS       DASWTX010000255         1698 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_112224, whole genome shotgun sequence.
ACCESSION   DASWTX010000255 DASWTX010000000
VERSION     DASWTX010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1698)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1698)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1698
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112224"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            122..>1698
                     /locus_tag="VGD38_03965"
     CDS             122..>1698
                     /locus_tag="VGD38_03965"
                     /inference="COORDINATES: protein motif:HMM:NF019758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727200.1"
                     /translation="MKLRMPEMPPATLLSALEGYNLLPAIVFMPTRRRCDKAASEAAL
                     ARPFGSDRRREERREFMRSFVEQHPEVRNHRHWDTIIRGGVASHHAGHIPAWKLVIER
                     LMSAGLLDAIFATATVAAGVDFPARSVVLTGADARTASGWRTLSASELQQMTGRAGRR
                     GRDNVGFVVAAPGLHQDPLRIAQLLKAPPDPLVSQFRATYTTLLNLLDAYGTFAHVRE
                     IAERSFAHRHTVRQLVQLEKSRDESAQKLERPLKESGCDLPISTVLGLERLVSARARL
                     QEAKPQTRAEVFSRWLNEVVKPGRVVGIGRSGKRLVMVTDKRDGAVRGIREDGSSASF
                     PQERIGRVYSPIYRLREQDIEHAFEEIHERGRDLTLHEPRLRDVYAEETDALKILEDS
                     IESLLPPRITGPDRTRCTQLLWELHETAEDYERATRRIEALREDVWLPFEQRAKVLSV
                     FGYLDFEAEKVTERGRWLADLHIDRPLLVGEALENGLFNSLDLKQLAGIMAALTADEE
                     REYGNLELEDDMFTSLSR"
BASE COUNT          353 a          499 c          520 g          326 t
ORIGIN      
        1 atcacgggtc cggggaaacg tccggttccg ttgcgttcgg ccgtgctgct gcccgacaaa
       61 cgattgctgg cattgattga cgagagtgga aacattaatc cacaggttac acagctgatt
      121 catgaaactt cgaatgcctg aaatgccgcc ggcgacgttg ctgtcggcgt tggaaggtta
      181 caacctgctg cccgcgatcg tgttcatgcc gacgcggcgc cgttgtgaca aggccgcgtc
      241 cgaagcggcg ctggcgcggc cgtttggcag cgatcggcgt cgtgaagaac ggcgcgagtt
      301 tatgcggtcg tttgtcgagc agcatccgga agtacgcaac caccggcact gggacacgat
      361 cattcgcggc ggcgtcgcgt cgcatcacgc gggacacatt ccggcgtgga agctcgtgat
      421 tgaaagattg atgagcgcgg gtttgctcga cgcgatcttc gcgacggcga ccgtggccgc
      481 gggggttgat tttccggcgc gcagcgttgt gttgactggt gcggatgcgc gcaccgcgag
      541 tggctggcgc acgttgtcgg cttccgaatt acaacagatg actgggcgtg ccgggcgtcg
      601 tggacgtgac aacgtcgggt ttgttgtggc cgcgccgggc ttgcaccagg atccgttgcg
      661 catcgcacag ttactcaaag cgccgcccga tccgctcgtc agtcaattcc gcgcaaccta
      721 cacgacgctt ctgaacctac tcgatgctta tggaacattt gcgcacgtgc gcgagatcgc
      781 tgaacgcagt ttcgcgcatc gccacaccgt gcggcagctt gttcaactcg aaaagagccg
      841 tgacgaaagc gcacaaaagc ttgaacgccc gctgaaagaa tcgggctgcg atcttccgat
      901 ctcgacagtg ctcggtttgg aacggctcgt cagcgcgcgt gcgcgtttgc aggaagcgaa
      961 accgcaaaca cgcgccgaag ttttttctcg ctggctcaac gaagtggtca aacccggacg
     1021 cgtcgtaggc atcgggcgca gtggcaaacg tctcgtgatg gtcactgaca aacgtgacgg
     1081 cgcggtgcgc ggtattcgcg aagacggaag cagcgccagc tttccgcagg aacgaatcgg
     1141 ccgcgtctat tcgcccattt accgcctgcg cgaacaagac atcgaacacg cctttgagga
     1201 gattcacgaa cgcggccgcg acctgacgct gcacgagccg cgcttgcgcg acgtctacgc
     1261 cgaagaaacc gacgcgctaa aaatcctcga agacagtatc gaaagcctcc tgccgccgcg
     1321 catcacgggt ccggatcgca cacgctgtac tcagcttttg tgggaactgc acgagactgc
     1381 cgaagactac gaacgcgcga cacgccggat cgaagcactg cgcgaagacg tttggcttcc
     1441 gttcgaacaa cgcgcaaaag tgctttccgt gtttggctat ctcgacttcg aagccgaaaa
     1501 agtgaccgaa cgcggccgct ggctcgcaga cctgcacatc gatcgtccgc tgctcgtcgg
     1561 cgaggctctc gaaaacggac tgttcaattc gctcgacctg aaacagctcg cgggaatcat
     1621 ggctgcgcta accgctgacg aagaacgcga atatggcaat cttgaactcg aagacgacat
     1681 gtttacgtcg ctgtcgcg
//
LOCUS       DASWTX010000256         2139 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_372355, whole genome shotgun sequence.
ACCESSION   DASWTX010000256 DASWTX010000000
VERSION     DASWTX010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2139
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_372355"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            36..1073
                     /locus_tag="VGD38_03970"
     CDS             36..1073
                     /locus_tag="VGD38_03970"
                     /EC_number="3.4.15.6"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyanophycinase"
                     /protein_id="HEY0727201.1"
                     /translation="MLTCSFAAALLRVARFSCVAVAVFCLFASAVYAAPKQGFQAFIV
                     GNPADAQQSSSLSPGLVLMGGGSDVDAAFQWMCQRAGGGDFVVIRTSGTDAYNPYIQQ
                     LCPQMDSVETIIITSTTGANSAYVSSHIQNAEALWIAGGDQSTYTALWRGTAVQTGVN
                     FLLNSKQAPVGGTSAGLAVLSQFIYTGALGSVTSSQALANPFHRYVTLERDLFQSALG
                     GGKLYDSHFVTRDRMGRSLVFLARIVNNGWAAQPRGIGIDEETAILITPNGAGTMVGS
                     GAAYFLQAPGPAQVLADRTPMTYLNISVYKVPQGATFNLSTWTGTGGVAYTLNVNNGS
                     VTSTQAGGNIY"
     gene            1158..1490
                     /locus_tag="VGD38_03975"
     CDS             1158..1490
                     /locus_tag="VGD38_03975"
                     /inference="COORDINATES: protein motif:HMM:TIGR03433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEY0727202.1"
                     /translation="MKDKKKDLLQGTLDLLVLKSLALGPLHGLGVSDRIAQITQGAFQ
                     VKPGSLFPALHRLEEAGWLKSSWGESDNNRRAKYYRLTKKGERQLKIETDAWQRVSVA
                     ITSALEAT"
     gene            1520..>2139
                     /locus_tag="VGD38_03980"
     CDS             1520..>2139
                     /locus_tag="VGD38_03980"
                     /inference="COORDINATES: protein motif:HMM:NF038403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease prefix domain 1-containing protein"
                     /protein_id="HEY0727203.1"
                     /translation="MPFLPRVNSLWRNLFNKEKVDHELAEEIRAHLDLLTETKIKQGL
                     APEEARRAALVELGGVEQVTESVRAVRQGRLLEDLWQDARYALRSLRKHPGFTVIAIF
                     TLALGIGANTAIFSVINAVLLRPLPYADADRLVVLTETVAERPIGVSYPNFVDFRNQS
                     TTFENVAAVRHRESFNLTGTGDSERLQGRLVSANFLATVGVKPIRGR"
BASE COUNT          467 a          665 c          593 g          414 t
ORIGIN      
        1 gctctgcgtc atcgactctt cgggaggatc tcaccatgct tacgtgttcc tttgcggcag
       61 ctttgctgcg cgtcgctcgc ttttcatgtg ttgcagtcgc cgtcttctgc ctctttgcgt
      121 cggccgttta tgcagcgccg aaacagggct ttcaagcgtt catcgtcggg aatcctgccg
      181 atgcgcaaca atcttcttca cttagtccgg ggctcgtgct gatgggtggc ggcagcgacg
      241 tcgacgccgc ttttcagtgg atgtgccaac gcgcgggtgg cggcgacttc gtcgtcatca
      301 gaacgagcgg caccgacgcg tacaacccgt acatccaaca actctgcccg caaatggact
      361 ccgtggaaac gatcatcatc accagcacca cgggcgcgaa ctctgcttac gtcagtagtc
      421 acattcaaaa cgccgaagcg ctgtggatcg ccggcggcga tcagtcgact tacacagcgt
      481 tgtggcgcgg aacagcagtg caaaccggcg tgaactttct gctcaactcg aagcaagcgc
      541 ccgttggcgg caccagcgcc gggctcgccg tgctcagtca gtttatctac accggcgcac
      601 tcggctccgt tacttcgagc caggcactcg cgaatccgtt tcatcgttac gtcacgctcg
      661 aacgcgatct gtttcaatcg gcgctcggcg gaggcaagct ctacgactca cacttcgtga
      721 cccgcgatcg catgggccgt tcgctcgtct ttctcgcgcg catcgtgaac aacggctggg
      781 ccgcgcaacc gcgcgggatc ggcatcgacg aagaaacagc gatactcatc acgccaaacg
      841 gcgccggtac gatggtcgga agcggcgcgg cctattttct tcaggcgccc ggcccggcac
      901 aggtgctcgc cgacagaacg ccgatgacgt atctcaacat cagcgtctac aaagtcccgc
      961 aaggcgcgac gttcaatctc tcgacgtgga caggcacggg cggcgtcgcc tacacgctca
     1021 acgtcaacaa cgggtccgtc acgtcaacac aggccggcgg aaacatctac taacacgcaa
     1081 acccaccgaa ggcgtctcct attgacagtc tataggagac gcctgtaatc tcctatcgaa
     1141 cgtcgatagg agaaacgatg aaagacaaga agaaggatct cctgcagggc acgctcgatc
     1201 tgctggtgct caaatcactc gcactcggcc cgctgcacgg gctgggtgtg tccgaccgca
     1261 tcgcgcagat cacgcagggc gcgtttcagg tcaaacccgg ttcgctgttc cctgccctgc
     1321 accgtctcga agaagccggc tggctgaaat cgagttgggg tgagtcagac aataaccgcc
     1381 gcgcgaaata ctaccgcctc accaaaaagg gagaacgcca gctcaaaatc gaaactgacg
     1441 catggcaacg cgtttcggtg gccattacca gcgcgctcga agcaacatag gcccaaagta
     1501 atacaggaag gaccagccca tgccgttttt gccccgcgtc aatagtctct ggcgcaatct
     1561 cttcaataaa gaaaaggtgg accacgagct cgctgaagag attcgcgccc acctcgatct
     1621 gctcaccgaa accaaaatca aacaaggtct cgcaccggaa gaagcgcgtc gcgccgcact
     1681 cgtcgaattg ggcggcgtcg aacaggtcac agaaagcgtg cgcgcagtca gacaaggtcg
     1741 tctgctcgaa gacttgtggc aagacgcgcg ctacgcactg cgaagcttgc gcaaacatcc
     1801 cggcttcaca gtgatagcca tcttcacgct cgcgctcggc atcggagcca ataccgcgat
     1861 cttcagcgtg atcaatgccg tgttgctcag gcctttgccg tacgccgatg cggatcggct
     1921 cgtggtcctg actgaaacag tcgctgagcg tccaatcgga gtttcgtatc caaactttgt
     1981 cgactttcga aatcaaagca cgacgtttga gaacgtcgct gccgtgcggc atcgcgagag
     2041 tttcaatctc accggtacgg gagacagcga acgtttgcaa ggcaggctcg tgtcagcaaa
     2101 ctttctcgcg acggttggcg tgaagccgat ccgcggccg
//
LOCUS       DASWTX010000257         3367 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_154553, whole genome shotgun sequence.
ACCESSION   DASWTX010000257 DASWTX010000000
VERSION     DASWTX010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3367)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3367)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3367
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154553"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3196)
                     /locus_tag="VGD38_03985"
     CDS             complement(<1..3196)
                     /locus_tag="VGD38_03985"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HEY0727204.1"
                     /translation="MKELLPEAPNIRLLLIFLLVLLFPGDAAGKTAKDVRIEDYEGRQ
                     ITAVELVFEGTAENPNVRAQLLALLKVAANTQFSAVRVRDSLQALFDSGDVENARVEV
                     IEQGAARTGPVQLRFVVKRQVQIGEVRIELGPVTGTPISVDELRARLNFIQPGTRLSQ
                     QLILRNADEIQVYLRDRGYFNATVEPVEQRGPRGIRATVTYRVTPGEQARVEAFNINI
                     KGFDASTVRNTLTLQPGISFTRDDLAADVSKIRDALVAKNFLSPMLEDARVERDADKN
                     TVRVTVNGAVGPTVNVKVTNYEISEKSQRELLPVKREGNIDYSAIVEGARRIRNKLQE
                     DGYFFAEVTEICRVSNPPAEVGPNGTPETCQNLNPTTLTGHNIEIEYQVEQGRRFRLN
                     DIRITGTNKLTYDDIAPNLKSQQANAIGLIPFLGYGRGYTSLTLLEQDRRTVEAFMRD
                     LGYRQVRAEVLQGVSIDGDSLIITFNVTEGPLTRIAGVEVKGNQIYTEERVRQELTTV
                     IGAPYSRSQARADADKVAQLYSREGYVNARVDFSIVELPQKGDDQQVRLIYSIADEGS
                     KVFINQIVVNGVTGSRSTRQTKRAAIRRAIPLREGDVLRADRISDAERELYLTDAYRQ
                     VIIRTEAAGETAGGYQRRDVIIDVEEKPPNVMDYGGGASTDYGALGLFEISNVNLMNR
                     LRQGALRLRASGRQQRVRLEYLDPRFVRYNETQFAPLAISVEYNRDSTITRFFRSAID
                     RGTMGIVQRLDEEGNPIDIFGTQVNEPTINRFTATVETQRILDRDTRTIVFARYSYED
                     VRLFNLESLVVRPILEPDSKVRLSRFGISFVRDTRERCEKGLLARSQREDDEQPGKPG
                     EICRYNQLDATRGGFLSVDYALALRQLGGNISFNRFQTTYRHYYKASWLRETIFAGNM
                     TLGLANLFNPVDRDGNGSIDEIDRTLPISERFFSGGSTTLRGFNFEEAGPREVVIPEG
                     EFRDQDNNVVFLNPFTVPVGGNALAVLNLEARVPLTRTIQVVPFYDGGNVFRRVGELF
                     GRSEPEPVPPGDILAAIRAANLRAHWTNTVGLGFR"
BASE COUNT          670 a          994 c          970 g          733 t
ORIGIN      
        1 aacggaaccc gaggccgacc gtgttggtcc aatgcgcgcg cagattggcg gcccgaatcg
       61 ccgcgagaat gtcgcccggt ggaaccggct ccggttcact cctgccaaac aactctccaa
      121 cgcggcgaaa cacgttgccg ccatcgtaaa acggcacgac ctgtatcgta cgcgtcagcg
      181 gaacacgagc ctccagattc aacaccgcga gcgcgtttcc gccgacggga accgtaaacg
      241 gattcagaaa cacgacgttg ttgtcctggt cacgaaactc accttccgga atcacgacct
      301 cacgtggacc ggcctcttca aaattgaaac cacgcaacgt cgtcgagcca cccgagaaga
      361 aacgttcact gatcggcagc gtgcgatcga tctcgtcgat actgccgttg ccgtcgcgat
      421 cgaccggatt gaacaggttc gccaaaccga gcgtcatgtt gcccgcgaaa atcgtttccc
      481 gcagccagct tgctttgtag tagtgccggt aagtcgtctg aaagcgattg aacgaaatgt
      541 tcccgccgag ctgccgcagc gccagcgcgt agtcgacact cagaaaaccg ccgcgcgtcg
      601 cgtcgagctg gttgtaacgg cagatctcgc cgggcttgcc cggttgctcg tcgtcctctc
      661 gctggctgcg cgccagcaaa cctttctcgc agcgctcgcg cgtgtctctg acgaacgaaa
      721 taccaaaccg cgacaaacga accttgctgt ccggttccag aatcggcctc acaaccaggc
      781 tttcgagatt gaacaggcga acgtcttcat agctgtaacg agcaaagacg atcgtgcgtg
      841 tatcgcgatc gagtatgcgc tgtgtttcca ccgtggcggt gaaccgattg atcgtcggct
      901 cgttgacctg ggtgccgaag atgtcgatcg gattaccttc ctcgtccaaa cgctgcacga
      961 tgcccatcgt gccgcgatcg atagccgaac ggaagaaacg cgtgattgtc gaatcgcggt
     1021 tatactcgac cgatatcgca agcggcgcga actgtgtttc gttgtaacga acaaagcgcg
     1081 gatcgagata ctcgagccgc acgcgttgct ggcgtccgct cgcgcgcaga cgcagcgcgc
     1141 cctgacgcag gcggttcatc aggtttacgt tgctgatttc gaacaagccg agcgcgccgt
     1201 agtcggtcga ggcgccgccg ccgtaatcca tcacgttcgg cggtttctct tccacgtcga
     1261 tgatcacgtc gcggcgttga tagccgccgg cagtttcacc ggccgcttcg gtgcgaatga
     1321 tcacctgccg ataagcgtcg gtgagataaa gctcgcgttc ggcgtcggag atgcgatcgg
     1381 cacgcaacac atcgccttct ctcaatggaa tcgctctcct gatcgcggcg cgtttggttt
     1441 gcctggtact cctgcttccc gtgacgccgt tgacgacgat ctggttgata aaaaccttgc
     1501 tgccttcgtc ggcgattgaa tagatcaggc ggacctgctg gtcatcgcct ttctgcggca
     1561 gctccacgat cgaaaaatcc acgcgcgcgt tgacgtaacc ttcgcgcgag taaagttggg
     1621 ccaccttgtc ggcgtcggcg cgcgcctgcg aacgtgaata aggcgcgccg atgacggtcg
     1681 taagctcctg acggacccgt tcctcggtgt agatctggtt tcccttgacc tcgacacccg
     1741 cgatgcgcgt gagcggccct tccgtgacgt tgaaagtgat gatcagactg tcgccgtcga
     1801 tcgagacgcc ctgcagcact tccgcccgca cctgtcgata gccgagatcg cgcatgaacg
     1861 cttcgacagt tcggcgatcc tgttcgagca aggtcaaact cgtgtaaccg cgcccgtaac
     1921 cgagaaacgg aatcagaccg atcgcgtttg cctgctggct tttcagattg ggcgcgatgt
     1981 cgtcgtaggt gagtttgtta gtgccggtga tgcgaatgtc gttcaaacga aagcgccggc
     2041 cttgttcgac ctgatactcg atctcgatgt tgtgaccggt tagcgttgtc ggattgaggt
     2101 tttggcaggt ttcgggcgtg ccgttcggtc ccacttccgc cggaggattg ctgacacggc
     2161 aaatctctgt gacttcggcg aagaagtaac cgtcttcctg aagcttgttg cgaatgcgcc
     2221 gcgcgccttc gacgatcgcc gagtaatcga tgttgccttc gcgtttgact ggcagcagct
     2281 cgcgctggct cttctcgctg atctcgtaat tcgtgacctt gacgttgact gtgggtccaa
     2341 ccgcgccgtt cacagtaacg cggactgtat ttttgtctgc atctctttcg acgcgggcgt
     2401 cttcgagcat gggcgacaga aagtttttgg cgaccagcgc atcgcgaatc ttcgacacgt
     2461 cggcggcaag atcgtcacgc gtgaaagata ttccgggctg caacgtgagc gtattgcgca
     2521 cggtcgaagc gtcgaagccc ttgatgttga tattgaatgc ttcgacgcgc gcctgttcgc
     2581 caggcgtgac gcggtaagta acggtggcgc gaataccgcg cgggccgcgt tgttcgaccg
     2641 gttcgacagt cgcgttgaag tagccgcggt cacgcaagta gacctgaatc tcgtcggcgt
     2701 tgcgcagaat gagttgttgc gagagtcgtg tgcctggctg gatgaaattc aggcgcgcgc
     2761 gcagttcgtc gacggagatt ggcgttccgg ttaccgggcc caattcaatc cgcacttcgc
     2821 cgatctgcac ctggcgtttg acgacgaaac gaagctgcac cggccccgtg cgagcggcgc
     2881 cttgttcgat gacctcaaca cgcgcgttct caacgtcgcc ggaatcaaac agcgcctgta
     2941 gcgagtcgcg cacacgaacg gcggaaaact gtgtattcgc cgcgactttc agcagggcaa
     3001 gtaactgagc ccgaacgttc gggttctccg ccgtcccttc gaagacgagc tcaaccgcag
     3061 tgatctgacg gccttcgtag tcttcgatcc gcacatcctt cgccgttttt cctgcggcgt
     3121 cgccgggaaa cagaagaacc agcaggaaaa ttagcagcag tcgaatgttg ggcgcctccg
     3181 gcaacaattc cttcacttac cccttgctca aaatcgcttt cgaaaacgaa tctcaaaact
     3241 gaagttgttg gtctgcgcag tgagtcttcg tgtcgaggct tgttcgtact gcgcgataaa
     3301 cgacagccgg tcagacacgc gatactcgac cgccaaaatt tgattcgggt ctgatgcaac
     3361 gttggtt
//
LOCUS       DASWTX010000258         1742 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_154554, whole genome shotgun sequence.
ACCESSION   DASWTX010000258 DASWTX010000000
VERSION     DASWTX010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1742)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1742)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1742
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154554"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1424)
                     /locus_tag="VGD38_03990"
     CDS             complement(<1..1424)
                     /locus_tag="VGD38_03990"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY0727205.1"
                     /translation="MIRAHRLAGFVILALFATFQAASTSHSAAEKPTIELKPCKPERI
                     TGDAKCGTLEVFENRATQKGRKIKINVLVLPATGPQREPDALFYFAGGPGSAATEEAA
                     GVAQVLASVRQRRDLVFVDQRGTGQSNPLNCELFSAADPQSYFGFFLPLDDVRKCRAQ
                     LEPNADLTLYTTNIAMDDLDDIRAALGYEQINLYGGSYGTRAVLVYLRRHPKHVRTAI
                     LHGVAPTNQFMPRSFAQDTERALQGVLSECEADEACRKAFPQVKADAQRVLEQLLQSP
                     AEAEVQLPRSKDKVTLKLNRNLAAEAVRYMMYSPGGASRVPLFLHLAAEGNYAPLARA
                     ALMFRQNLVATGSNGMYLSVTCAEDLPFVKAEEAKKIAANTFLGSYRYDQQSAACELW
                     PRAMIDKKYAEPVRSDKPVLIMTGEWDPVTPPSYGDAVAKTLPNSVHIVVNDGAHGLS
                     GLQGVDCLDRLMTQFVERGSVKDL"
     gene            1517..>1742
                     /locus_tag="VGD38_03995"
     CDS             1517..>1742
                     /locus_tag="VGD38_03995"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY0727206.1"
                     /translation="MSSVEPDRVLLHYRILNKIGEGGMGQVYKAEDTKLGRHVALKLL
                     SPESSKDITARRRLLAEAQSASVLNHPNIVT"
BASE COUNT          345 a          525 c          512 g          360 t
ORIGIN      
        1 tcgaggtctt tgacgctacc gcgctcgacg aattgagtca tcaaacgatc gagacaatcg
       61 accccttgca acccgctgag accgtgcgcg ccgtcgttca ccacgatgtg cacactattc
      121 ggcagcgtct ttgcgaccgc atctccatac gacggcggcg tcaccggatc ccactcgcca
      181 gtcataatca acacaggttt gtcggaacgc accggctcgg cgtatttctt gtcaatcatc
      241 gcgcgcggcc agagctcaca cgcggcgctc tgctggtcgt aacgatacga accgaggaaa
      301 gtgtttgcag cgatcttttt tgcttcttct gctttgacga acggcagatc ttcagcacaa
      361 gtgactgaca gatacattcc attgctgccg gttgcgacga ggttctggcg gaacatgagc
      421 gcggctcggg ccagcggagc gtaattgcct tcggcggcga ggtgcaggaa aagcggaacg
      481 cggctggcgc cgcccgggct gtacatcatg taacgaactg cttccgccgc gagattgcga
      541 ttgagtttga gtgtgacttt atctttcgac cgcgggagtt gcacttcagc ttcggccggg
      601 ctttgtaaca actgttcgag cacacgctgc gcgtccgcct tcacttgtgg aaacgctttg
      661 cggcacgctt catcagcttc acactcggaa agcacgcctt gcagcgcgcg ctcggtgtcc
      721 tgcgcaaagc ttcgcggcat gaactgattc gtcggcgcga cgccgtgaag tatcgcggtg
      781 cgcacgtgct ttggatggcg tcgcaggtag acgagcaccg cgcgcgtgcc gtacgagccg
      841 ccgtagagat tgatttgctc gtaaccgagt gcggcgcgga tgtcgtcgag atcgtccatc
      901 gcgatgttgg tcgtgtagag cgtgagatcc gcgttgggtt cgagttgcgc gcggcacttg
      961 cgcacgtcgt cgagcggcag gaagaagccg aagtagcttt gcggatcggc ggcgctgaac
     1021 agttcgcagt tcaacgggtt cgattggccc gtgccgcgct ggtccacgaa cacgagatcg
     1081 cggcgctgcc gcacgctcgc gagcacctgc gcgacgcccg ctgcttcttc cgtcgcagcc
     1141 gaacctggac caccggcgaa atagaacaac gcgtcgggtt cgcgttgcgg gccggtggcg
     1201 ggtaacacga ggacgttgat cttgatcttg cggccctttt gcgtggcgcg attctcgaag
     1261 acttcgagcg tgccgcactt tgcgtcgccc gtgatgcgtt cgggcttgca cggcttcaac
     1321 tcgatcgtgg gtttctcggc cgccgaatgc gacgtgcttg cggcctgaaa cgtcgcgaac
     1381 aacgcgagaa tcacgaagcc tgccaaacgg tgcgctctaa tcatctacat ctcctcgcaa
     1441 acattggaaa tacacaacaa acgcaatata gtatcggccc tgattccgcc gcaaatacgc
     1501 gttaacaaat taggccatga gctcagtcga accagaccgt gtcctcctgc actaccgcat
     1561 tctcaacaag atcggagagg gcggcatggg ccaggtgtac aaagccgagg acacgaaact
     1621 cggccgccac gttgcgctaa aactgctctc gcctgaatcc agcaaagaca tcaccgcccg
     1681 gcgccggctc ctggctgaag cccagtctgc ttcggttttg aatcacccca acatcgtcac
     1741 ga
//
LOCUS       DASWTX010000259         2004 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_307556, whole genome shotgun sequence.
ACCESSION   DASWTX010000259 DASWTX010000000
VERSION     DASWTX010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307556"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..494)
                     /locus_tag="VGD38_04000"
     CDS             complement(<1..494)
                     /locus_tag="VGD38_04000"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY0727207.1"
                     /translation="MTFAKFDRYVDRHARNFTERLQSLCRMPSVAARATGMRAIAETV
                     EQLMQRVGIGTRTFRMGSGYPIIYGECGAGPKSFVVYGHYDVQPVGHLTDWSSGPFSA
                     TIQDGKLFARGAANSKGDLIARLAAVEAYQKSFGKLPVTLRFIIEGEDGLGSPSLYRF
                     TKDHP"
     gene            complement(491..1270)
                     /locus_tag="VGD38_04005"
     CDS             complement(491..1270)
                     /locus_tag="VGD38_04005"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY0727208.1"
                     /translation="MEEIQIRECTTIEEFDGCVALQSEAFGLPDLEISPRRHLIVSRE
                     AGGWTLAAFAGERMVGFVHHLVAVRPNNEIYGYSHMMAVAKDYQNKGIGARLKWAQRD
                     KALSQGRTFIKWTWDPMQSRNAHFNLNRLGVTVDSYLENFYGTDYFADPAQVDEELPG
                     LQSDRLVARWDLDSPRVVALGAKSAYAIKAAPAASVEIPAEWSTFVKRDVPRARDVQA
                     RVRNEFKKHFAEGLVCAALERVDEVSRYLLFEPRDLAHKEE"
     gene            complement(1483..>2004)
                     /locus_tag="VGD38_04010"
     CDS             complement(1483..>2004)
                     /locus_tag="VGD38_04010"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HEY0727209.1"
                     /translation="EADAFVVSDYDKGVITPAILREVLPFAYERVPVLVDPKLRNFNG
                     YRPATLVTPNHLEALRMSDTEDHSDDGSHNAAKIIQQKLGCDAVLITRGDRGMMLLEA
                     GGEPVYVETAAREVYDVTGAGDTVIATLAGALAAGATMLEAATLANHAAGIVVGKVGT
                     ATATAGELLATFE"
BASE COUNT          404 a          634 c          529 g          437 t
ORIGIN      
        1 ggatggtcct tcgtgaaacg gtaaagactg ggactaccga gaccgtcctc gccctcgata
       61 atgaaacgta gagttacggg cagtttgcca aacgacttct ggtaggcttc aacagccgcg
      121 agccgcgcga tgagatcgcc cttactgttg gccgcgccgc gcgcgaataa ctttccgtcc
      181 tgtatcgtcg ctgagaacgg gccggagctc cagtccgtca ggtggccgac cggctgcacg
      241 tcgtaatggc cgtagacgac gaagcttttt gggccggcgc cgcattcgcc gtagatgatc
      301 ggataaccgg aacccatcct gaacgtgcgg gtgccgatcc cgacgcgttg catcaactgt
      361 tcaaccgttt cggcaattgc gcgcataccc gtggctcgcg cggcgactga cggcatccgg
      421 cacaggcttt gtaaccgttc cgtaaaattc cgcgcgtgac gatccacata acgatcgaac
      481 ttggcaaacg tcattcttct ttatgtgcta aatccctggg ctcaaacaat aaataacgtg
      541 atacttcgtc tactctttcc agcgcggcac aaacaagccc ttctgcaaag tgcttcttga
      601 attcatttct cacgcgtgcc tgaacatcac gagcacgcgg cacgtcacgc tttacgaatg
      661 tcgaccactc ggccggtatt tccactgacg ccgcgggcgc cgctttgatc gcatacgctg
      721 acttcgcacc gagcgcgacc acgcgcggcg aatcaagatc ccaacgcgcc acaagccggt
      781 cgctttgcag tcccggcaac tcttcatcaa cctgcgccgg atccgcgaag taatccgttc
      841 cgtaaaagtt ctcgagatat gaatccaccg tgacgccgag ccggtttaga ttgaagtgcg
      901 cgttgcgcga ctgcatcgga tcccaggtcc acttgataaa cgttctgccc tgggagagcg
      961 ccttgtcgcg ttgcgcccat ttcagccgcg cgccgatgcc tttgttttga tagtcctttg
     1021 ctaccgccat catatgcgag tagccgtaga tttcgttgtt cggacgtacc gccacgaggt
     1081 ggtgaacaaa cccaaccatc cgctcgccgg caaatgcagc cagcgtccag ccgcccgcct
     1141 cgcgcgacac tatcaaatgc cgccgcggcg agatttccag atccggaaga ccaaaggcct
     1201 cgctttgaag ggcaacgcaa ccgtcaaact cttcgattgt ggtgcactca cgaatctgaa
     1261 tctcttccat gcgttaacag tctgtccctt cgacctacct gcgcgtcttc cgttaccttc
     1321 gcgcttttca atattagtct ttcaactccg aaggagttcg ccaacgcttt cagcgttgtg
     1381 gcgttcttga aagaacattt gtcccagggt aggaaaccct gggctgaaat tagcgaacgc
     1441 cttcggcgtt caaacaaaaa ccttcttatt caaggtcgcc cgttattcaa acgtcgcgag
     1501 cagttcgccg gcggtggcgg tggcggtgcc gactttgccc accacgattc cggcggcgtg
     1561 gttggcgagg gtcgctgctt cgagcatcgt tgcgcccgcc gcgagcgcgc ccgcgagggt
     1621 cgcgattact gtgtcgcctg cgcccgtgac gtcgtaaact tcgcgcgctg ctgtctcaac
     1681 gtaaaccggt tcgccgcccg cttccaacaa catcatcccg cgatcgccgc gcgtgatcag
     1741 caccgcgtcg caaccgagct tctgttgaat gatcttcgcc gcgttgtgcg aaccgtcatc
     1801 cgaatgatcc tcggtgtcgc tcatgcgcaa cgcttccagg tggttcggcg tgacgagcgt
     1861 cgccggtcga tacccgttga agttgcgcaa cttcggatcg accaaaaccg gcacacgctc
     1921 gtacgcaaac ggcagcacct cgcgcaagat cgccggcgtg atcacgccct tgtcgtaatc
     1981 ggaaacgaca aacgcatctg cctc
//
LOCUS       DASWTX010000260         3010 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_393975, whole genome shotgun sequence.
ACCESSION   DASWTX010000260 DASWTX010000000
VERSION     DASWTX010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3010
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_393975"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2061)
                     /locus_tag="VGD38_04015"
     CDS             complement(<1..2061)
                     /locus_tag="VGD38_04015"
                     /inference="COORDINATES: protein motif:HMM:TIGR02669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIID/LytB domain-containing protein"
                     /protein_id="HEY0727210.1"
                     /translation="MSVEVMSLVGPAIRQVKRVTREHALFLCFAAAAIMFFLLTSSYA
                     HWIALNVAGNFISDTSDRKDAEIDVALQQAANSALGDRDGTIIVMDARTGRVRAIANP
                     KLAYTRPLMPGSAIKPFTALATLRAGLIDEGSSTVCPGRFTGLNFSLPCVHENHLPPF
                     SPSQAIAYSCNYYFAAAGQRLGRDKLVATLREFDFGKPTGISEEELSGVVRPCEIGNN
                     ARVRKSEPNGADESDCLERSAVGESNHIQVTPIQLLTAYTALVNGGHLFKPQVAPGDE
                     FQPIERSNISIAPQHRAIIVNGMRGAISYGTARAAKLDSLPLTIIGKTGTATPATGFR
                     NNGWFVGFAAPIQSSGEFDPSRIELAVLVLAPRAHGSDAAKLAQPIFETYAHKISAGT
                     FTVSRSDANPNAANIASTHESSIRVHLVRENVTQTLSLEDYVAGVLRGEATVEPEPEA
                     LKALAITIRTYALKNIGRHATRGYDFCSTTHCQRFVPATTGSSADGRIAAAVRATEGQ
                     VLHDSHARSIDAYFSASCGGETANIRDLWGVTPALHLRGVRDEYCITGPHAKWTDTVS
                     RADLLRALQTDSRTDVGARLDQVRISQRDETGRAEFITLDGEHRKTVRGWDFKIIVGR
                     ALGWNVLKSSRFEVVHSGSDFVFRGSGFGHGLGLCQEGAHVMAARGASYQKILEKYFP
                     GTVVT"
     gene            complement(2058..2909)
                     /locus_tag="VGD38_04020"
     CDS             complement(2058..2909)
                     /locus_tag="VGD38_04020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727211.1"
                     /translation="MTTTTLKLWLSAIAATITNFGALLIFAAIYAVLLVASYFFISVR
                     EATIWQVLITYALMILIPLGFFTLQSAIVNRALDQRFRWRVILIDALKFLALTIVVLL
                     VVWLLHYLLNKIAVRYPAPIVEAPPPVDKAAPPPTAPLHWPSLIFTTLRFVLWGVAFP
                     LAAIHLWIAVAGGELRGLFSDGAKSFFKRIGSALARAFSSHSVSIYGLGLIIFFVLPY
                     VALIPKFTVSGNKTEFAVFGLRLLLAFVFSLVGWVSTLTALTRTAPALTAEVVASDVG
                     LPTESAA"
BASE COUNT          660 a          871 c          879 g          600 t
ORIGIN      
        1 cgttacgacc gtccctggaa aatatttctc cagaatcttt tgataactcg ctccacgcgc
       61 ggccatcaca tgcgcgcctt cctgacacag tccaagccca tgaccgaaac cgctgcctcg
      121 gaaaacgaag tccgatcccg aatgaacaac ttcgaaccgc gagctcttca aaacattcca
      181 gccgagcgct cgtcccacga tgatcttgaa atcccagcca cgaacagttt tgcgatgctc
      241 gccgtcgagc gtgatgaatt cggcgcggcc cgtttcgtcg cgctgactaa ttcgaacctg
      301 gtccaaccgg gcgccgacgt cggtgcgcga atcagtttgc agcgcgcgca ggagatcggc
      361 gcggctaacg gtgtcagtcc acttagcgtg aggaccggta atgcagtatt catcacgaac
      421 gccgcgcaga tggagggctg gagtcacgcc ccagaggtcg cggatgttgg cggtttcgcc
      481 gccacaggac gcactgaagt atgcgtcgat cgatcgggcg tggctgtcgt gcagcacctg
      541 gccttcggtg gcgcgaactg cggcggcaat gcgaccgtca gccgaagagc cggtcgttgc
      601 aggcacaaac ctctgacagt gtgtggtgga acaaaagtcg tagccgcgtg ttgcgtggcg
      661 tcctatgttc ttcagcgcgt aggtgcgaat cgtgatggcg agcgctttca gtgcttccgg
      721 ctcaggttca actgtggctt cgccgcgcag tacgccggcg acatagtctt cgagtgaaag
      781 tgtttgcgtt acgttctcgc ggacgagatg cacacggatg gacgactcgt gtgtagaagc
      841 gatgttcgca gcgttgggat tggcatcgct tctcgaaacc gtgaacgtgc ccgcgctaat
      901 cttgtgtgcg tacgtctcga aaatcggctg ggccagcttt gcggcatccg atccgtgcgc
      961 tcgcggtgcc agaaccagca ctgccaactc gattcgcgat gggtcgaatt cgccgctgct
     1021 ctgaatcggc gccgcgaatc cgacaaacca accgttgttg cgaaaacctg ttgccggtgt
     1081 cgcggtaccg gtcttgccga tgatggttaa gggcagggaa tcgagttttg ctgcgcgcgc
     1141 ggttccgtag ctgattgcgc cgcgcatgcc gttgacgatg atggcgcgat gttgtggcgc
     1201 aatgctgatg ttggaccgct cgattggttg aaactcatct cccggagcca cctggggttt
     1261 gaataaatgt ccaccattca cgagcgctgt gtaggcggtc aacaattgaa tcggcgtaac
     1321 ctggatgtga ttgctttcgc cgacggctga ccgctcgagg caatccgatt cgtcggcccc
     1381 gttcggctcg gatttgcgca cgcgcgcgtt gtttccgatc tcacacggac gcacgacgcc
     1441 gctgagttct tcttccgaga tccccgttgg cttaccaaaa tcgaactcgc gtaatgtcgc
     1501 gactaactta tctcttccga gtcgctgtcc cgcggccgcg aagtagtagt tgcaggagta
     1561 cgcgatcgcc tgcgacggcg agaacggggg caggtgattc tcgtgtacgc acggcagtga
     1621 aaaattcaat cccgtgaagc ggcccggaca gacagtgctc gagccttcat cgatcagtcc
     1681 cgcgcgcagg gtagccagcg ccgtgaaagg cttgattgcc gagccgggca tcagtggccg
     1741 tgtataggcc agttttggat tggcaatcgc gcggacgcgg cccgttcgcg cgtccatgac
     1801 gatgattgtt ccgtcgcggt ctccgagcgc ggagttggcg gcttgctgaa gcgcgacatc
     1861 gatttcggcg tcctttcgat cagaggtgtc gctaataaag ttgccggcca cgttgagtgc
     1921 aatccagtgc gcgtacgagg aagtaagcag gaaaaacata atcgccgcgg cggcgaagca
     1981 gaggaacagt gcatgctcgc gcgtgacacg cttaacttgc cgaatagctg gaccaaccaa
     2041 actcataact tcaacgctca cgcggccgac tccgtcggaa gcccgacatc cgacgctacg
     2101 acttcagcag tcaaagccgg cgcagttctc gtaagtgccg tcaacgtcga tacccaaccg
     2161 acgaggctga acacgaacgc cagcagcaat cgcaaaccga aaaccgcgaa ctctgtcttg
     2221 ttgccgctaa ccgtaaactt cggtatcagc gcgacgtacg gcagcacaaa gaagatgatc
     2281 agcccgagcc cgtaaatcga aaccgaatgt gacgagaaag cgcgcgcgag cgccgagccg
     2341 attcgtttga aaaacgactt cgccccatcg ctgaaaagac cgcgcaactc accacccgcc
     2401 accgcgatcc atagatgaat cgccgccagc ggaaacgcca caccccacaa cacaaaacgc
     2461 agcgtggtaa aaatcagact gggccaatga agcggcgctg ttggtggcgg agctgctttg
     2521 tcgaccggcg gcggcgcttc cacaatcgga gccggataac gcaccgcgat cttgttcagc
     2581 aagtaatgga gcagccacac aacaagcagc accacgatcg tcaacgccaa aaacttcagc
     2641 gcatcgatca ggatcacacg ccagcggaat ctctggtcca atgcacgatt gacgatcgcg
     2701 ctttgcaggg tgaagaagcc cagcggaatc aggatcatca acgcgtaggt gatcagcact
     2761 tgccagatcg tcgcttctcg taccgagata aagaaatacg acgcgacgag caggacggcg
     2821 tagatagccg cgaagatcaa tagcgcgcca aagtttgtga tcgtggcggc gatcgcgctg
     2881 agccagagtt tcagagtagt tgtagtcatg tcacttctta tccagaattc tcaagcggtc
     2941 atttgtcgtg ttcgcctgca cggtcggctg atacatcagt tcgccgcgcg cgggtgcgat
     3001 cttgaattca
//
LOCUS       DASWTX010000261         6345 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_68950, whole genome shotgun sequence.
ACCESSION   DASWTX010000261 DASWTX010000000
VERSION     DASWTX010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6345)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6345)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6345
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68950"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..791)
                     /locus_tag="VGD38_04025"
     CDS             complement(<1..791)
                     /locus_tag="VGD38_04025"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY0727212.1"
                     /translation="MGLVRTPLARGAAIVLKGPAKKVLVLGAGMAGLVATYELTQLGH
                     DVTVLEARTRPGGRVHTLREPFSDGLYAEEGAARIPDNHELTLKYVKQFALPLEPFYP
                     SRLNAVRFDRGSREEVSIEGYTQAMTENYGGELGDGPERWRKIKGGTDLLPKAFAQRL
                     EGKIIYGAQVVKIEQDAKTARVVFLKAGAQQTLTADAVLCTIPLSVLRKVELPALSSR
                     KRDAIKRTRYDAVSRVYLQTKNRFWEERGLNGFAFTRGAIEVWHPT"
     gene            complement(1134..2792)
                     /locus_tag="VGD38_04030"
     CDS             complement(1134..2792)
                     /locus_tag="VGD38_04030"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY0727213.1"
                     /translation="MLKRFVALSLVLSLLSLPALAQNGTGDVLTRIRAEAMERSQIMK
                     TMHMFTDLYGPRLTGSPNHKAAAEWAVKQMTAWGFENAHLDPWDFKHPGWLNERLTAH
                     IIAPVKDPLVCEVLAWTPSTKGTVQANATHLVLPERPTQDQLTTFFSINKSRVNGRIV
                     LVGKAAVVPVNLNPPPKRQSDEQAKQRYGPDARPFAFPTPSPTPTPAPNAPRPLSNRQ
                     IGEQVDAFLKENGALVRVNDAGREFRQIRAFNNSTFDVNKVVPTVVMSNEDFGRITRI
                     LKDGTDVTLEFNIVNRTYPEGATSYNTIAEIRGTDKADEVIMLGGHLDSWHAATGATD
                     NAIGCAIMMEAARILKTIGVKPRRTIRVALWSGEEQGLLGSVAYVKKHFGSFEDPKPG
                     YEKFGGYFNIDSGTGRVRGVSVFGPPETASILRGILEPFAADGVVGAVATRSRRIGGS
                     DNTSFNQAGLPGIGLGQDPIEYNSHTWHTNLDTYERILEDDVKKNAMVVAWAVYQLAM
                     RDDRLPRFSKSEMPPKPAEGPSAQPSPAPSRRDTSSGRATAPGN"
     gene            2850..4775
                     /gene="thiC"
                     /locus_tag="VGD38_04035"
     CDS             2850..4775
                     /gene="thiC"
                     /locus_tag="VGD38_04035"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: protein motif:HMM:NF006763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HEY0727214.1"
                     /translation="MSAGTKATPIEHNENRSLPNSRRVYVDGKLPGVRVPFREITQSP
                     SRELDGTVVANPAVRVYDTSGPWGDPDLHCDSVKGLPELRREWIRARGDVEEYEGREV
                     QPIDDGYLTFAAASRARVKDVGRLEEFPTERRAVLRAKPGSCVTQLHYARRGIITPEM
                     EFIAIRENLGREAAQSFTSQAGAAPRDSLLHQHPGQSFGARVPQYVTPEFVRSEVARG
                     RAIIPANINHPESEPMIIGRNFLVKINANIGNSAVASSIEEEVDKMRWSIRCGSDTVM
                     DLSTGKNIHATREWIIRNSPVPIGTVPIYQALEKVGGKAEELTWEIFRDTLIEQAEQG
                     VDYFTIHAGVRLAYIPLTARRTTGIVSRGGSIMAKWCLAHHEESFLYTRFREICEIMA
                     AYDVSFSLGDGLRPGSIADANDEAQFAELETLGELTNIAWEHDCQVMIEGPGHVPMHL
                     IKENMDKQLETCHEAPFYTLGPLTTDIAPGYDHITSAIGAAMIGWFGTAMLCYVTPKE
                     HLGLPNKKDVKDGVIAYKLAAHAADLAKGHPGAQYRDNALSKARFEFRWEDQFNLSLD
                     PEVAREYHDETLPQEGAKLAHFCSMCGPHFCSMKITQDVREYAAQKQIDEDAALTLGM
                     KEKAQEFVDAGGEIYRK"
     gene            4823..5044
                     /locus_tag="VGD38_04040"
     CDS             4823..5044
                     /locus_tag="VGD38_04040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727215.1"
                     /translation="MSNVAEIEKLAFELTDQERAVLAAKFLQSLPPVLDDEDEGIAEA
                     LRRDAEMERDPSQRISLAELKALIKDRQR"
     gene            5573..>6345
                     /locus_tag="VGD38_04045"
     CDS             5573..>6345
                     /locus_tag="VGD38_04045"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEY0727216.1"
                     /translation="MSGLIRFVLVSVVICAPVARAQQRVATGSVPPSVFKDPERKQKL
                     AAAFPEIEKLFKASAERMPGAVMGIIVDGELVWVKAAGVREVSSNQSGSAKAPVTPET
                     VFRIASMTKSFTAMAILKLRDDGKLSLDDPVSKYVPSLAELPYPTSDSPAITIRHLLT
                     HSEGFPEDNPWGDRQLAQSDETMRAWMKAGIPFSTAPGTAFEYSNYGFAILGQVIAKA
                     SGKSYADYVRDNILRPLGMNASTFEMSQVPRDQIALGYRR"
BASE COUNT         1349 a         1848 c         1838 g         1310 t
ORIGIN      
        1 gtcgggtgcc aaacctcaat cgcgccgcgc gtgaaagcga agccgttcag tccgcgttct
       61 tcccagaagc gattctttgt ttgcagatac acgcgcgaca cggcgtcgta gcgcgtgcgt
      121 ttgatcgcgt cgcgctttcg cgacgacagc gccggcaact caaccttgcg caacacggac
      181 aacggaatcg tgcagagcac agcatctgca gtcagcgtct gctgcgcgcc cgctttcaag
      241 aagacgactc gcgcggtctt agcgtcctgt tcgattttca cgacctgtgc gccgtaaatg
      301 atcttgcctt cgagccgttg cgcaaatgcc ttcggcaaca ggtcggttcc gcctttgatc
      361 ttccgccagc gctcggggcc gtcacccaat tctcccccgt aattctcggt catggcttgg
      421 gtataacctt cgatcgatac ttcctcccgg ctgccgcgat cgaaccggac cgcgttgagc
      481 cgcgacggat aaaacggttc gagcggaagc gcaaactgct tcacatactt cagcgtcagc
      541 tcgtgattgt cgggaatgcg cgcggcgcct tcttcggcgt aaaggccgtc agagaagggt
      601 tcgcgcaggg tatgaacgcg tccacccgga cgcgtgcgcg cctcgagcac ggtcacgtca
      661 tggccgagtt gggttagctc gtaggtagca acaagcccgg ccattccggc gcccaacacg
      721 agcaccttct tagccgggcc tttgagaacg atcgccgcgc cgcgcgccag cggcgtccta
      781 accaaaccca cccccgccgc cgcaaatgcg ctgcgcctca aaaactggcg gcgagtaagt
      841 gccaacaaac cctcccggag gttgctgatt agaaccgaac ggcgagttac aaacgccgaa
      901 ggcgttagct aattggagcc cagggttgaa acaaccctgg gtagcaacaa aaaattatga
      961 agacaacgct gaaagcgttg gcgagtttgc caacaccttc ggcgttgcaa acgtaatggt
     1021 ttttgccgtc ccagggttgt cgcgatgctc caaccctggg ctgaaattag cgaacgcctt
     1081 cggcgtatct cgagctaccc aaccgccgaa ggcgttggat tgagaagacg ctgttaattc
     1141 cccggcgcgg tggcgcggcc ggaggatgtg tctctacgac tcggcgccgg cgaaggttgc
     1201 gcggatggtc cctccgcggg cttcgggggc atctcggatt tcgagaagcg cggcagccgg
     1261 tcgtcccgca tcgccaactg gtacaccgcc cacgccacga ccatagcgtt ctttttcacg
     1321 tcgtcttcga gaatacgctc gtacgtgtcg agattcgtgt gccacgtatg cgagttgtac
     1381 tcgatcggat cctgtcccaa tccaatcccc ggcaaacccg cctggttgaa cgacgtattg
     1441 tcagacccgc caatccggcg actgcgcgtc gcgaccgcac ccacaacacc atcagccgca
     1501 aacggctcaa gtatcccgcg caaaatactc gcggtctccg gtggaccaaa caccgacacg
     1561 ccacgcacgc gccccgtgcc tgaatcgata ttgaaataac caccaaactt ctcgtaaccc
     1621 ggcttcggat cctcaaacga gccgaagtgc ttcttcacat acgctaccga ccccagcaag
     1681 ccctgctctt caccactcca caacgcgacg cgaatcgtgc gtcgcggttt gacgccaatc
     1741 gttttcagaa tgcgcgcggc ttccatcatg atcgcgcaac caatcgcgtt gtcagtcgcg
     1801 ccggtcgccg cgtgccacga atccaggtgg ccgccgagca tgatcacctc atccgcctta
     1861 tcggtgccgc gaatctccgc aatcgtgttg taagaagtcg cgccctcggg atacgtgcgg
     1921 ttcacgatgt tgaattcgag cgtgacgtca gtgccgtctt tgagtatgcg cgtgatgcgg
     1981 ccaaagtctt cgttgctcat cacaacggtc ggaaccactt tattaacgtc aaacgtgctg
     2041 ttgttaaaag cgcggatctg ccgaaactca cgtcccgcat cgttcacgcg aacaagcgcg
     2101 ccgttctctt tcaaaaacgc gtcgacctgc tcgccaatct gtcgattgct gagcggacgc
     2161 ggcgcgtttg gcgcaggcgt cggtgtcggc gacggtgtcg gaaatgcgaa tggccgcgcg
     2221 tctgggccat aacgctgttt cgcttgttcg tcactttgcc gcttcggcgg cggattcaag
     2281 ttcaccggaa ccacagccgc tttccccacg agcacgatgc gcccgttcac gcgcgacttg
     2341 ttgatgctga agaacgtcgt caactgatcc tgtgtcggcc gttccggcaa caccaagtgc
     2401 gtcgcgtttg cctgcactgt ccccttcgtg ctcggcgtcc acgcgagcac ttcgcacacg
     2461 agcggatcct tcaccggcgc gatgatgtgt gcggtgagcc gttcgttgag ccatccggga
     2521 tgtttgaagt cccacggatc gaggtgcgcg ttctcgaagc cccacgcggt catttgtttg
     2581 acggcccatt cagcagcggc cttgtggttc ggcgagccgg tcaatcgcgg accgtaaaga
     2641 tccgtgaaca tgtgcatggt cttcatgatc tgcgatcgct ccatggcttc cgcgcggatg
     2701 cgggtaagca cgtcgcccgt accgttttgt gcaagcgcgg gcagcgacag gagtgacaga
     2761 actagcgaca aagcgacaaa ccgtttcagc atttgtgtct ccggaaagcg gattaggttg
     2821 ggtcctacgg acgagattat actttgcgca tgagcgccgg gacaaaagct acgccgatcg
     2881 aacacaacga aaacagatca cttccaaact cgcgccgtgt ttacgtcgac ggcaaactgc
     2941 cgggcgtgcg cgtgccgttt cgcgaaatca cgcagagtcc gtcgcgtgag ctcgacggca
     3001 ctgtggtggc gaatcccgca gtgcgtgttt acgacacgag tggaccgtgg ggtgatccgg
     3061 atttgcattg cgacagtgtg aagggcttgc ccgaattgcg gcgcgagtgg attcgcgcgc
     3121 gcggcgatgt tgaagagtac gaaggccgcg aagtgcaacc tatcgacgat ggttatctga
     3181 cgttcgcagc agccagtcgg gcgcgtgtga aagacgttgg ccggctcgaa gagtttccaa
     3241 ctgagcggcg cgcggtgttg cgcgcgaagc cgggttcatg cgtgacgcag ttgcactacg
     3301 cgcgccgcgg aatcatcacg cccgagatgg agttcatcgc gatccgcgag aacctcggac
     3361 gcgaagcagc ccagtcgttc acatcgcaag cgggtgcggc gccgcgcgat tcattgttgc
     3421 accagcatcc ggggcagtcg tttggcgccc gggtaccgca gtacgtgacg ccggagtttg
     3481 tgcgatctga agtcgcacgc ggccgcgcga tcattcccgc gaacatcaac catcccgagt
     3541 cggagccgat gatcatcgga cgcaacttcc tcgtgaagat caacgcgaac atcggaaact
     3601 ccgcggtggc ttcgtcgatc gaagaagaag tcgacaagat gcgctggtcc atccgctgcg
     3661 gttcagacac agtgatggat ctttcaaccg gcaagaacat ccatgccacg cgcgaatgga
     3721 ttatccgcaa ctcgccggtg ccaatcggca cggtgccgat ctatcaagca ctggagaaag
     3781 tcggcggcaa ggctgaagag ctgacgtggg agatctttcg cgacacgttg atcgaacagg
     3841 ccgaacaggg cgttgactac ttcacgattc acgccggtgt gcggctcgct tacattccac
     3901 taactgcgcg ccgcacgacg gggatcgtca gccgtggcgg ttcgatcatg gcgaagtggt
     3961 gccttgcgca tcacgaggag agttttctgt acacacgctt ccgcgagatc tgcgagatca
     4021 tggccgctta cgacgtttcg ttttcacttg gcgacggtct acgtccgggc tcgattgccg
     4081 acgcaaacga cgaagcgcag tttgccgaac tcgaaacgct cggtgagttg acgaacatcg
     4141 cgtgggaaca cgattgccag gtgatgatcg aaggtccggg tcacgtgccg atgcacttga
     4201 tcaaggagaa catggacaag cagctcgaga cctgccatga agcgccgttc tatacgcttg
     4261 gtccactcac gaccgacatc gcacccggtt acgatcacat cacttcagcg atcggggccg
     4321 cgatgattgg ctggtttggc actgcgatgc tctgttacgt gactcccaaa gagcacctcg
     4381 gactgccaaa caagaaagac gtcaaagacg gcgtcatcgc ttacaaactc gcggcgcacg
     4441 ctgcggatct cgcgaaaggt catccgggcg cgcagtatcg cgacaacgcc ttatcaaaag
     4501 cgcgcttcga gtttcgctgg gaagaccagt tcaacctctc gctcgatccc gaagtcgcgc
     4561 gcgagtatca cgacgagact cttccccagg aaggcgcgaa gctcgcgcac ttctgctcca
     4621 tgtgtggccc ccatttttgc tccatgaaaa tcacccagga cgtccgcgaa tacgctgcac
     4681 agaaacagat cgacgaagac gcggcgctga cgctgggtat gaaagaaaag gcgcaggagt
     4741 ttgtcgatgc cggtggggaa atctacagga aatagtcctt gccggatttg gcgctattaa
     4801 cgtctggagc tattcttttg ctatgagtaa cgttgctgaa atcgaaaagt tagccttcga
     4861 attgacagac caggagcgcg ccgttttggc cgccaaattc ctccagtctc ttcctccggt
     4921 cctggacgat gaagacgaag gtatagctga ggcgttgcgc cgcgacgcgg agatggagag
     4981 agacccttca caaaggattt cactggcgga gttgaaggct cttatcaaag atcggcagcg
     5041 ttgatgcgtt tggagttaag tcctcagata ggttcggatc tcactcagat tcgtgagcat
     5101 tacggagcgg tggcaggacc tgaacttgcg gacgagttct gttctgaact gcttcgatac
     5161 ttcgaaaggg cactcgaata tcctctagcg tatcgagttc gctctcacga tcttcggcgt
     5221 gttgatctta aaaggtttcc ctttcacttc tggttccgct taatccctcc tgacacggtg
     5281 cgcatcttag taattcgcca tcacaaacga gaaccactag gacgcgatga agctgaactg
     5341 ctaaagcacc ttagcgatac agggagtaaa gagggaatga agtttttacc tgtaaattca
     5401 agaatgattc ttggagtacg ctacaacgca aaaactcgtg aaatggatat agtgttccgg
     5461 acaggtgaca agtaccggta caaacgagtt ccgcgaacag tatatgacga actcctaagt
     5521 gctgattctc acggacagta catgcacaag cgaatcttgg gtcaatatga atatgagcgg
     5581 cttgattaga tttgtcctcg tctcggttgt gatctgtgcc cctgtggcgc gcgcgcaaca
     5641 acgcgtggcg acggggagtg tgccgccgtc ggtgtttaaa gatcccgagc ggaagcagaa
     5701 gctcgcggcg gcgtttccgg agattgagaa gttgtttaag gcgtcggcgg agaggatgcc
     5761 gggcgcggtg atgggcatca tcgtcgatgg cgagctcgtt tgggtgaagg cggcgggcgt
     5821 gcgcgaagtc agcagcaacc agagcgggag cgctaaagcg ccggtcacgc cggagacggt
     5881 ttttcgtatc gcgtcgatga ccaagagctt caccgcgatg gcgatactca agctgcgcga
     5941 tgacggaaag ctgtcgctcg acgatccggt ttccaaatac gttccgtcac tcgcggagct
     6001 tccttatccg accagcgatt cgcccgcgat cacgattcgc catttgctga cacactccga
     6061 aggttttccc gaagacaatc cgtggggcga tcggcagctg gcccaatcgg acgaaacgat
     6121 gcgcgcgtgg atgaaggccg gtattccgtt ctcgactgca ccgggaaccg ctttcgaata
     6181 ttcaaactac ggcttcgcga tcctcggcca ggtgatcgcc aaagcctccg gtaagtcata
     6241 cgcggattac gttcgcgaca acatcctgcg gccgctcggc atgaacgcca gcacgtttga
     6301 gatgtcgcaa gtgccgcgcg atcagatcgc gcttggctat cgccg
//
LOCUS       DASWTX010000262         2383 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_154620, whole genome shotgun sequence.
ACCESSION   DASWTX010000262 DASWTX010000000
VERSION     DASWTX010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2383)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2383)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2383
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154620"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1631
                     /locus_tag="VGD38_04050"
     CDS             <1..1631
                     /locus_tag="VGD38_04050"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HEY0727217.1"
                     /translation="VLDSMAEAGAITQDEAKTAKATSLQVVPARGRIDVSDAPYFADY
                     VQNQLGDMIAGSSGTEHLRIYTTIDMDLQRAAYTALTKQLASLDKIQAKRVEPGTLQA
                     ALVAMNAKTGEIVAMVGGRDYSKSQLNRASDAMRQPGSVFKPFVYATALNTAYDPVPR
                     VITPSTTFMDEPKTFTYDNQEYSPGNFGETYSHEPVTLRDALVHSLNVVTVEVAMEVT
                     IGRVMSLAGKAGLPRPARAYPAMALGTSEATPLQIASAYTSFANLGTRTTPIAINRIT
                     TGNGVTIAAPTTQKNEVMRPEVAYVMTSFMKDVVNRGTASKVRGRGMKAVLAGKTGTS
                     RDGWFAGYTPNLVCAVWVGFDDGSQLGLTGANSALPIWADFMQVALAEHPEWDGDWEV
                     PAGLEQIDVNPKTGAPTQPGDTEKRVEYFINGTGPGDGVEEPTEEATPEELPEPTPGV
                     ELQPMEPIPTVSPTPSPRRAAVITDDRLEVSITVDIDPTTGLLAAETCPIIRTKTYAR
                     GTEPKKYCGPEYHRGRTIEPVPPARPRVVGTPQR"
     gene            complement(1603..1962)
                     /locus_tag="VGD38_04055"
     CDS             complement(1603..1962)
                     /locus_tag="VGD38_04055"
                     /inference="COORDINATES: protein motif:HMM:NF013738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein"
                     /protein_id="HEY0727218.1"
                     /translation="MSYSAAFKDHLAHPRNAGELPEATVVVEQNNPVCGDRLRLSLIV
                     REERIEAARYLAYGCPPTLVCGSVLTELITGKTVSEVRNLTRAELIEAVGGLPSRKHH
                     AAALAIEALNAAVSRLL"
     gene            complement(1968..>2383)
                     /locus_tag="VGD38_04060"
     CDS             complement(1968..>2383)
                     /locus_tag="VGD38_04060"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY0727219.1"
                     /translation="REELHERTTHDSRLRDRFEQKIIELIPDVVMNGDRQQRLPHLSN
                     ISFRYIEGEGLLINLDLQGVAVSTGSACSSGTLEPSPVIRALGVSDEIARGSIRFSFG
                     RDNTDSDLDYTVEVLVHAVERLRALSPLNRPLVVS"
BASE COUNT          501 a          684 c          756 g          442 t
ORIGIN      
        1 aagtgctcga ctcgatggcc gaagctggcg cgatcactca ggacgaagcg aagaccgcga
       61 aagcgacgtc gcttcaagtc gtgcccgcgc gcgggcgcat cgacgtttcc gacgcgcctt
      121 acttcgccga ttacgtgcag aaccagctcg gcgacatgat tgctggatcg agtggcacag
      181 agcacctgcg tatctacacc acgatcgaca tggatctgca acgcgcggct tataccgcgt
      241 tgacgaaaca gctcgcctcg ctggacaaga ttcaggcgaa gcgtgttgaa ccgggcacgt
      301 tgcaggcagc gctggtggcg atgaacgcga agacgggcga gattgtcgcg atggttggcg
      361 ggcgtgatta ttcgaagagc cagttgaacc gcgcgtctga tgctatgcgc caaccgggtt
      421 ctgtgttcaa gccattcgtg tacgccacgg ctttgaatac ggcttacgat ccggtgccgc
      481 gagtgatcac gccgtcgacg acgttcatgg acgagccgaa gacgttcact tacgacaacc
      541 aggagtattc gcccggtaac tttggcgaga cgtacagtca cgagccggta acgttgcgtg
      601 atgcgctcgt gcacagtctc aacgtcgtga cggttgaagt ggcgatggaa gtgacgatcg
      661 ggcgcgttat gagtctggct gggaaagcgg gattgccgcg accggcgcgc gcgtatccgg
      721 cgatggcgct cggcacgagt gaggccacgc cgttgcagat cgcttccgct tacacgtcct
      781 tcgcgaacct cggaacgcgc acgacgccga tcgcgatcaa tcgcatcacg actggcaacg
      841 gcgtcacgat tgccgcgccg acgacgcaga agaatgaagt gatgcggccg gaagtcgctt
      901 acgtcatgac gtcgttcatg aaagacgtcg tgaatcgcgg cacggcttcg aaagtgcgcg
      961 ggcgtggtat gaaagcggtg ctcgcaggca agacgggcac ttcgcgcgac ggctggttcg
     1021 cgggttacac gcccaatctc gtgtgcgcgg tgtgggtcgg ttttgacgat ggctcacaac
     1081 tcggattgac cggcgcgaat tccgcgttgc cgatctgggc cgacttcatg caggtcgcgc
     1141 tggctgagca tccggagtgg gacggcgatt gggaagttcc cgcggggctc gaacagatcg
     1201 acgtcaatcc gaagacgggc gcgccgacac agccgggcga cactgaaaag cgtgtcgagt
     1261 atttcatcaa cggcactggt ccaggtgatg gtgtcgagga gcccactgaa gaggcgacac
     1321 cggaagagtt gccggaacca acgcctggtg ttgagctgca accgatggag ccgattccga
     1381 ccgtttcgcc gacgccatca ccgcggaggg cggcagtgat cacggacgac cgtcttgaag
     1441 tgtcgatcac ggtggacatc gatccgacga cgggcctgct cgccgccgag acctgtccga
     1501 tcattcgcac gaagacgtat gcgcggggaa cggagccgaa gaagtactgt ggtcctgagt
     1561 atcaccgcgg ccggacgatc gaacccgttc caccggcgcg gcctagagta gtcgggacac
     1621 cgcagcgttg agcgcctcga ttgcgagcgc ggcggcgtga tgttttcgcg aggggaggcc
     1681 gccaacggct tcgattagct cagcgcgcgt cagattacgc acttcggaaa ccgtctttcc
     1741 ggtaatcaat tccgtcaaaa cagaaccgca gacgagtgtc ggtgggcagc cgtaggcgag
     1801 atagcgcgcc gcttcaatcc gttcctcccg aacgatcagc gacagccgca gccggtcacc
     1861 acaaacagga ttgttctgtt caacgacgac cgttgcttcc ggcaactcgc cggcgttacg
     1921 cgggtgtgca agatgatctt tgaatgcggc tgagtaggac acctgggtta cgagacaacg
     1981 agcgggcgat tcagcggtga gagtgcgcgt aagcgttcga cggcatggac caacacctcg
     2041 accgtataat ccaaatcaga atccgtatta tccctgccaa aactgaaacg aatggagccg
     2101 cgtgcgattt catcgctgac gcccagcgcg cgtatcaccg gcgacggctc gagcgttccc
     2161 gacgaacacg ccgaaccggt cgacaccgct acaccctgca gatcgagatt gattaacagt
     2221 ccttcgcctt cgatataacg aaacgagatg ttcgacaagt gcggcagccg ctgttgtcgg
     2281 tcgccgttca tcacgacgtc gggaatcagt tcgataatct tctgttcgaa ccggtcgcgc
     2341 aaacgcgaat cgtgcgtggt ccgttcgtgc aactcttcgc gtg
//
LOCUS       DASWTX010000263         3523 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_154640, whole genome shotgun sequence.
ACCESSION   DASWTX010000263 DASWTX010000000
VERSION     DASWTX010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3523
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154640"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..207
                     /locus_tag="VGD38_04065"
     CDS             <1..207
                     /locus_tag="VGD38_04065"
                     /inference="COORDINATES: protein motif:HMM:NF013630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEY0727220.1"
                     /translation="ATSANETAAPSLNKVRARKGDTIARIAAARNLDASEVARLNGIP
                     VDAELKAGQEVKIPATAATPSRRR"
     gene            256..1818
                     /locus_tag="VGD38_04070"
     CDS             256..1818
                     /locus_tag="VGD38_04070"
                     /inference="COORDINATES: protein motif:HMM:TIGR00368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HEY0727221.1"
                     /translation="MLFRTLSAAVYGIDADLVDIEVDLTQNRGETEQSSVTIVGLPDA
                     AVRESRERIRAAMQNCGYFFPFQKTTINLAPADVRKEGASFDLPIALGILGANGDLAE
                     HYSLIHILCVGELSLDGRVRAIKGALPIAILAREASIRHVVLPEESAKEAAVVDGVNV
                     YPVADLRSAVKLIAELRSETPPLPLRVETAEILSRTEQFNIDFKEVRGQVSAKRALEI
                     ASAGGHNILLIGPPGSGKTMLAKRLPTIMPPLEFDAALELTKIHSVAGLTGRAGLVTE
                     RPFRSPHHTISDAGLIGGGSVPRPGEVSLAHQGVLFLDELPEFDRKVLEVLRQPLEDQ
                     KVTISRAAMSLTFPASFMLVGSMNPCPCGHWSDPTRDCRCSPLQIQRYIGRISGPLLD
                     RIDIHIDVPAVKFRELTGDVLPETDSSAAIRARVVKARERQLHRLRAERIFCNAAMTP
                     RMIRVHCKIDSQSERMLESAMMRLGLSARAYDRILKVSRTIADLEGSDKIASTHVSEA
                     VGYRSLDRTYWT"
     gene            2049..2756
                     /locus_tag="VGD38_04075"
     CDS             2049..2756
                     /locus_tag="VGD38_04075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727222.1"
                     /translation="MSEFDGIQIDVNRPVANHKNVYVYEKLRDENGNPIKPDADWRWV
                     TDFEKPPLFPNGIKLEKKDVTPGIWINHGLFYTLLKTTYEFELRKGLFGSSGPNIGNV
                     ALLVGGNIYLERDGEVTLTIRYRNPARSKTYTLPWAANKCYQIDIRNMCKHCEPGHYG
                     AWQNDFYLYNSTFTVPSGTPKPTYRLHRLGRRNPNAVKYLKFAQEVCVTESAKEEIES
                     NNEAPCGPVCAGAGGGG"
     gene            3088..>3523
                     /locus_tag="VGD38_04080"
     CDS             3088..>3523
                     /locus_tag="VGD38_04080"
                     /inference="COORDINATES: protein motif:HMM:NF024189.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HEY0727223.1"
                     /translation="MIVGGLICPFLVTASAFTCNGPTNVALASNGATASASSSFTGHA
                     ASGAINGDRRGLYVWQNGYWAAASTGSAWLEVQFNGSKTISEIDVVVVQDNDQAPVEP
                     TDTMTFASYGMTAYDVQYWNGSSWVTVSGGSVTGNNKVWRKFS"
BASE COUNT          795 a          991 c          991 g          746 t
ORIGIN      
        1 gcaacttcag cgaatgaaac tgcggcgcct tcgttgaata aggttcgcgc gcgcaagggc
       61 gacacgatcg cccgcatcgc ggcggcgcgt aatctcgacg cgagtgaagt ggcgcggttg
      121 aatggaattc cggttgatgc cgagttgaaa gccggtcagg aagtgaagat tcctgcaaca
      181 gcggccacac catctcgacg ccggtaagtt ctttaaattt ttgttcctca catttcacat
      241 taggagcttc ctcacatgct ctttcgtacg ctttctgctg ccgtctacgg catagacgcc
      301 gatctcgtag acatcgaagt tgacctgaca cagaaccgtg gtgaaacgga gcagtcgtcc
      361 gtaacgattg tcggcctgcc cgatgctgcc gtgcgcgagt cgcgcgaacg catacgcgcg
      421 gcgatgcaaa actgcggtta cttctttccg tttcaaaaga ccacgatcaa tctcgcgccc
      481 gccgacgtgc gcaaagaagg cgcgagtttc gatctcccga tcgcgttagg aattctcggc
      541 gccaacggcg atctcgccga acactacagc ctcattcaca ttctctgcgt cggcgagctt
      601 tcgctcgacg gtcgtgtgcg cgcgattaaa ggcgcgttgc cgatcgcgat cctcgcgcgt
      661 gaagcgtcga tacgtcatgt tgtgttgccg gaggagagtg cgaaagaagc agcagttgtc
      721 gacggtgtga atgtatatcc ggttgcggat ctgcgtagtg cagtgaaact gattgcagag
      781 ctgcgttcgg agacgccgcc gctgcctttg cgtgttgaga cggcggagat cctttcgcga
      841 accgagcagt tcaatatcga cttcaaagaa gtgcgcggtc aggtctcggc gaaacgcgcg
      901 ctcgaaatcg cgagcgcagg cgggcataac attctgctga tcggtccacc cggatcggga
      961 aagacgatgc tggcgaagcg tctgccgacg atcatgccgc cgctcgagtt tgacgctgcg
     1021 ctcgagctca cgaagattca ttcagttgct ggattgacgg gccgcgcggg tttggttacg
     1081 gagcgaccgt ttcgctcgcc gcaccacacg atcagcgatg cgggtttgat tggcggtggc
     1141 agtgtgccgc ggccgggtga agtctcattg gcccatcagg gcgtgttgtt tctcgacgag
     1201 ttgccggagt ttgatcgaaa ggttctggag gtactgcggc aaccgttgga agatcaaaag
     1261 gtgacgatca gccgcgcggc gatgtcgttg acgtttcccg cgtcgttcat gctcgtcggc
     1321 tcgatgaatc cttgcccttg cggccactgg tcggacccga cgcgcgactg tcgctgttcg
     1381 ccgttgcaga ttcagagata catcggccgc atctctggac cactactcga tcgcatcgac
     1441 attcacatcg acgttcccgc cgtgaagttc cgcgaactga cgggcgacgt cttacccgaa
     1501 acagacagct ctgcggcgat tcgcgcgcgc gtcgtcaaag cacgcgaacg ccagttacat
     1561 cgtctccgtg cggaacgcat cttctgcaac gccgcgatga ctccgcgcat gatccgcgtg
     1621 cattgcaaga tcgactccca aagtgaacgc atgctcgaga gcgccatgat gcgcctgggc
     1681 ctctcggccc gcgcctacga tcgcattctc aaagtcagcc gcacgatcgc ggatctcgaa
     1741 ggcagcgaca agatcgcctc cactcacgtc tccgaagccg tcggctaccg ctccctcgac
     1801 cgcacctact ggacgtgagg cacgttcgta aaatgtttga taaagagctc gctaatcagt
     1861 tatcgttcgg gcgctttccg acccttcaat ctggagctcc tcatgactga cacgaacgaa
     1921 actgcccaat cgtcgagggt gcacgtcatc ggcatcgtca cgagcttcac ttgcaattat
     1981 gggaaagaat tacgggctgc ggtcctggtc agagttgcgg cacccccaca acaataccgc
     2041 tcgacgatat gagcgagttt gacggtatcc agatcgacgt gaataggccg gtcgcgaatc
     2101 acaaaaacgt ttacgtttat gaaaagttgc gcgacgagaa cggaaacccg atcaagcctg
     2161 acgccgactg gcgctgggta acggattttg aaaagccacc tctgttcccg aacggaatca
     2221 agctggagaa gaaggatgta actcccggta tctggatcaa ccacggactc ttttacactt
     2281 tgcttaaaac aacctatgag ttcgagctcc gtaaggggct attcgggagt tctggcccta
     2341 acattggcaa tgtggctctc ctggttgggg gaaacatcta tttggaacga gacggcgagg
     2401 taaccttaac gatcaggtat cgcaatcctg caagatcgaa gacttacact ttgccgtggg
     2461 cggctaataa gtgctatcaa atcgacatca gaaatatgtg caagcattgc gaacccggac
     2521 actacggagc ctggcaaaac gatttctacc tttacaattc caccttcaca gtaccatctg
     2581 gaacgccaaa gccaacgtac cgcttgcacc gacttggtcg tcgtaacccg aacgccgtta
     2641 aatatctaaa gttcgctcaa gaagtttgtg tcaccgaatc cgccaaagaa gagattgagt
     2701 cgaacaacga agctccctgt ggtcctgttt gcgccggggc tggcggcggc ggctgagtgc
     2761 agtattggac cggacaaatg gaccaactgc ttgaacgata tgacacgtgc tgtaaaagga
     2821 ctgcacaggt tggaccaaga caaaagagta gcaagaaagt tgttgacagt ggtcgcgcaa
     2881 agccgtaagg tacgccgcgt ctcattggcc cagactcaca ctcatatcga gttgtactag
     2941 cgcgagactc aaccgccgtt ctgatcaaga tgaacaagcc ggcggacccg tgcgcaatga
     3001 gggaacctta cgatgcactc acgaatctca catacccgtc caaagctatc gctgcttatt
     3061 aatcttttct gcagaactgc ctgtggcttg atcgtaggcg gcttgatctg tccattcctt
     3121 gtgaccgcct cggcctttac ctgcaacggt ccaacgaatg tcgcactagc gagcaacggc
     3181 gccaccgcga gcgcgtcctc gagcttcacg ggccatgctg cgagcggcgc aatcaacggt
     3241 gaccgccgcg gcctgtacgt ttggcaaaac ggctactggg cagcggcttc aaccggctcc
     3301 gcctggctgg aagtgcaatt taacggcagt aaaaccatca gcgagatcga cgtcgtcgtt
     3361 gttcaggaca atgaccaggc gccggttgaa cccaccgaca ccatgacgtt cgcgagttac
     3421 ggaatgaccg cgtacgacgt gcagtactgg aacggcagtt cgtgggtgac cgttagcggc
     3481 ggcagcgtca ccggcaataa caaagtctgg aggaagttca gtt
//
LOCUS       DASWTX010000264         1791 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_351095, whole genome shotgun sequence.
ACCESSION   DASWTX010000264 DASWTX010000000
VERSION     DASWTX010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1791
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351095"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            250..1596
                     /locus_tag="VGD38_04085"
     CDS             250..1596
                     /locus_tag="VGD38_04085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727224.1"
                     /translation="MTTVACSFLLIAQIAHAQQVVRITEAEAINPAEVSIAINPQNPE
                     NMIAASLQIGRPPKPRASSYQYITFDGGKTWTTVPTPNSSNLVQGDDVVVFSSDGIAY
                     HVHLSFDGIRQARPQRAENGMIMNVSKDGGKTWTDGTAAINHVNTVTPFEDKPGIVVD
                     NAAASRWKGNTYVAWTRFDVYGSADPEHRSQIYFTRSTDQGQTFSMPFRISDTGGDCV
                     DSDNTVEGAVPAVGPNGEVYIVWAGPLGLVFDKSLDGGLSFGKDKVIGNIPGGWDFSV
                     QGLQRANGMPNTAVDLSNGPNKGTLYVNWIDARNGDLDVFVMSSRDGGETWSLPVRVN
                     DDQLKNGKEQFFTWMSVDPADGSVNIIFYDRRDTSGALTGLTLARSVDGGKTFVNRKI
                     DVPAFAPNPNVFFGDYGGISAYGGRVVPAFMHFVEGKLVASVALFRFKPGTQEIVP"
     gene            complement(1606..>1791)
                     /locus_tag="VGD38_04090"
     CDS             complement(1606..>1791)
                     /locus_tag="VGD38_04090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727225.1"
                     /translation="LQVADAMALKIAAARKAKTPVNPDEERELFAIFDSLLRDKTFTA
                     QTQLIQFRRNETQRLLK"
BASE COUNT          394 a          528 c          509 g          360 t
ORIGIN      
        1 gtcccgccac actcctggca cgtccgcaag tgcacccacg tcgaaccaat cttcacacac
       61 tcctcgcaga cgcgtttctt agcgtgtttg acttccgtaa gggcgttgat atgaaggcaa
      121 gcttctgggc tcataatatt ccccctggat ctttaataaa cactctacgc ttaaacgagc
      181 gcactgtact ccgaactacg gtccatgtaa acatgaaaca tgcgaaccca aaacaaccgg
      241 cgatttggag tgaccactgt agcctgcagc tttctgctaa tcgcacaaat agctcacgcg
      301 cagcaggtgg tgaggattac ggaggcggag gcgattaatc cggccgaggt gagtattgcg
      361 attaatccgc agaatcccga gaacatgatt gcggcgtcgc tgcagatcgg gcgcccgccg
      421 aagcctcgcg ccagtagtta tcagtacatc acgttcgacg gcggcaagac atggaccacc
      481 gttcccactc ccaattccag caacctggtc cagggtgatg acgtcgtcgt gttcagcagc
      541 gatggcatcg cgtatcacgt tcatctctcc ttcgacggca tccgccaggc gcgcccgcag
      601 cgcgcggaga atggaatgat catgaacgtc tcgaaggacg gcggtaagac gtggaccgac
      661 ggcaccgcag ccatcaatca cgtcaacacc gtcactccgt ttgaagacaa acccggaatc
      721 gtcgtcgaca acgcagccgc atcgcgctgg aaaggcaaca cctacgtcgc gtggacgcga
      781 ttcgatgttt acggcagcgc cgatcccgag caccgctcgc agatctactt cacacgctcc
      841 accgatcagg gccagacgtt ctcgatgccg tttcgcatct ccgacaccgg cggcgactgc
      901 gtcgacagcg acaacacggt cgaaggcgcc gtgccggctg ttggtccaaa cggcgaggtt
      961 tacatcgtct gggccggtcc gctcggtctg gtgttcgaca agtcgctcga cggcggtctt
     1021 tcgttcggca aagacaaggt catcggaaac attcccggcg ggtgggactt ctcggtgcag
     1081 ggtctccaac gcgccaacgg catgccgaac acggccgtcg atctcagcaa tggaccaaac
     1141 aaaggaacgc tctacgttaa ctggatcgac gcgcgcaacg gcgacctgga cgtgtttgtg
     1201 atgtcgtcgc gagacggcgg tgagacatgg tcgctgccgg tgcgcgtcaa cgacgatcag
     1261 ctcaagaatg gcaaggaaca gttctttacg tggatgtcag tcgatcccgc ggacggctcg
     1321 gtgaacatca ttttctacga tcgacgcgac acttcaggtg cgcttaccgg attgacgctt
     1381 gcacgcagcg tcgacggggg gaagacgttc gtgaatcgca agatcgacgt gccggcgttt
     1441 gcgccaaacc caaacgtgtt ctttggtgac tacggcggca tctccgcgta tggcggaaga
     1501 gtcgtgccgg cgtttatgca cttcgtggag ggaaagctcg tggcgtcagt cgcgttgttc
     1561 aggttcaaac ccggaacgca ggagatcgtt ccgtaagccg caagattatt tcaacaagcg
     1621 ctgagtttca ttgcggcgaa actgaatgag ctgtgtttgc gcagtgaatg ttttgtcgcg
     1681 caaaagcgag tcgaagatcg cgaacagctc gcgctcctca tcaggattca ccggagtctt
     1741 cgccttgcgc gccgcagcga tcttcaacgc catcgcgtcc gccacttgca g
//
LOCUS       DASWTX010000265         2320 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_89670, whole genome shotgun sequence.
ACCESSION   DASWTX010000265 DASWTX010000000
VERSION     DASWTX010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2320
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89670"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1744)
                     /locus_tag="VGD38_04095"
     CDS             complement(<1..1744)
                     /locus_tag="VGD38_04095"
                     /inference="COORDINATES: protein motif:HMM:NF014615.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HEY0727226.1"
                     /translation="MSILDAIKERIVVFDGAMGTNLQVQNLTLDDFGGPRFEGCNENL
                     LVTRPDAVENVHSAFLEAGCDVIETNSFNGTPVDFAEYGIGDQAYDMNVRAARLAKRI
                     ASDYSTKAKPRWVAGSMGPGRKLPTLGHITFTELRDAYRVQVRGLLDGGADLLIVETC
                     QDLLQTKAALSAIFSVFEETRTRVPVIAQVTIETFGTMLNGTEISAALTALAPFPIDV
                     IGMNCGTGPKHMTESIRYLCENAPLPVSVLPNAGLPSVVDGKMHYDETPDSFTAQIVH
                     FASDFGVNIVGGCCGTTPAHLSRVVEAMQRITPKQRDAKLVAAASSIYIQQPYVQDAS
                     FLIIGERVNASGSKKMRDLLNAGDWDGLVALGKEQEREGAHILDVNVDFVGRDGEADM
                     HELASRLVTNVKIPLMFDSTEWQKMEAGLQHAGGKCILNSTNYEDGVPRFLKVIDLAK
                     KYGASVVIGTIDEEGMARTAEGKFKIAKRAYEQATQEAGLAASDIFFDPLALPISTGI
                     EEDRRNALETIESIKRIKSELPGAYTLLGVSNVSFGLSPASRVVLNSVFLHDAVEAGL
                     DAAIVNASKIEPLNR"
     regulatory      complement(1789..1864)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00521"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="SAM riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00521"
BASE COUNT          493 a          700 c          617 g          510 t
ORIGIN      
        1 tacgattcaa cggctcgatc ttgctggcgt tgacgatcgc ggcgtccagt cccgcttcaa
       61 cagcatcgtg caaaaacacg gaattgagca cgacgcgcga cgccggactc agaccaaatg
      121 aaacgttaga cacgccgagc agtgtgtacg cgccgggcaa ttcactcttg atgcgcttga
      181 tggattcaat cgtttcgagc gcgttgcgac ggtcttcttc gataccggtc gagattggca
      241 acgccaacgg atcgaagaaa atatccgacg ccgccaaacc ggcttcctgt gtcgcctgtt
      301 cgtaagcgcg cttcgcgatc ttgaacttgc cttccgccgt gcgcgccatt ccctcttcgt
      361 cgatcgttcc gatcacgaca ctcgcgccat acttcttcgc gagatcgatc accttcagaa
      421 aacgcggcac accgtcttca taattcgtcg aattgagaat gcatttgccg cccgcgtgtt
      481 gcagcccggc ttccatcttc tgccactcgg tcgagtcgaa catcaacgga atcttgacgt
      541 ttgtcaccaa acgcgacgcg agctcgtgca tgtcggcttc gccatcacgg ccgacgaaat
      601 cgacgttgac gtcgagaatg tgcgcgcctt cgcgttcctg ttccttgccg agcgcgacga
      661 gaccgtccca atcgcctgcg ttcagcaggt cacgcatctt tttcgacccg ctcgcattca
      721 ctcgttcgcc gatgatcaga aacgacgcgt cctgcacgta aggctgttga atgtagatcg
      781 acgacgcagc cgcgacgagt ttcgcatcgc gctgcttcgg cgtgatccgc tgcattgctt
      841 cgacgacgcg gctgaggtgc gcgggcgtcg tcccgcaaca accaccgacg atgttcacgc
      901 cgaagtcgct ggcgaagtga acgatttggg ccgtgaaact atccggcgtt tcgtcgtagt
      961 gcatcttgcc gtcgacgact gaaggcagac ccgcattcgg cagcactgaa accggcaacg
     1021 gcgcgttctc gcagagatac ctgatgctct cggtcatgtg ctttggacca gtgccacagt
     1081 tcatgccgat gacgtcgatc ggaaacggcg cgagagccgt taacgcagca gagatctcgg
     1141 tgccattgag catcgtgccg aacgtttcga tcgtgacctg cgcgatcacg ggcacgcgcg
     1201 tgcgcgtttc ttcaaacacg gaaaagatcg ccgagagtgc ggctttggtt tggagcagat
     1261 cctgacaagt ctcgacgatc aacaagtcgg cgccgccatc aagcagacca cgaacctgaa
     1321 cccggtaagc atcgcgcagt tcggtgaaag tgatatggcc caacgtcggg agttttcttc
     1381 ccggtcccat cgaacccgcc acccagcgcg gttttgcttt cgtcgaataa tcggaagcga
     1441 tgcgcttcgc gagccgcgcc gcgcgcacgt tcatgtcgta agcctgatcg ccgatgccgt
     1501 attcggcgaa gtcgacgggc gtgccgttga acgagttggt ctcgataacg tcgcagccgg
     1561 cctcgagaaa agcgctgtga acgttttcga cagcgtccgg ccgcgtgacg agcaggtttt
     1621 cattacaacc ttcgaaacgt ggaccaccaa aatcgtcgag cgtcaggttc tggacctgaa
     1681 ggttggtacc catcgcgcca tcgaagacga cgatgcgttc tttaattgcg tcgagtatag
     1741 acataggcaa taacaaaggc cccgcgctta acaacgcgga gcctgataaa aactgactca
     1801 tcgagctgtt tagcggatta ttttacgtgg ccgcaagtcg ctttaactca ccacgtcaat
     1861 tgtcaaagcg tattgaagca catctcgccg cgactgtaaa tgccgcgcaa cgcggcgtcg
     1921 tcgactcacg gcaacatggt cccttggcgc agcataaata tggcgttgac gcgttagagc
     1981 gcgtggtcta tattgccgcg catgttgctc aatatcctgt aagaggtgtt cccccaccac
     2041 ttcttactcc ttataaccgt caggaagctc cccaaagcgt tccaagggtt tcaaaaggtc
     2101 acaatttaag acgcattggc aacagtagtt tgctgctgcc cgtgtaccaa tctctctgac
     2161 gcggctggtc cctaactaac ccagaccgcg ccgggcgagt aactgtaact ctgcaaagga
     2221 gagcctcatg cggcaccgca cactgtactc ccgtctacgt tcgttcgtct ccgtctccct
     2281 cgtcatttca ctcatgggag tttcaactcc cgcagctccg
//
LOCUS       DASWTX010000266         2715 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_89687, whole genome shotgun sequence.
ACCESSION   DASWTX010000266 DASWTX010000000
VERSION     DASWTX010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2715)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2715)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2715
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89687"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..266
                     /locus_tag="VGD38_04100"
     CDS             <1..266
                     /locus_tag="VGD38_04100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727227.1"
                     /translation="SVCRPLVEAATVDRCGFDVELLYLAFRAGLRLKEVPVRWDHNEG
                     SKISLISDSFRMLSEVGLIRQQARRGVYDSAIRAVHELKEIGS"
     gene            283..1032
                     /locus_tag="VGD38_04105"
     CDS             283..1032
                     /locus_tag="VGD38_04105"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: protein motif:HMM:NF003625.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HEY0727228.1"
                     /translation="MTARLNINIDHVATVRQARRAPEPSVIAAAMAAEQAGADGITVH
                     LRGDRRHIQDLDIRLLRDSVTTYLNLEMAATDEMLDIALQTTPDAVTLVAERPNEITT
                     EGGLDAKANIVVVSKAVDRLREANIMASLFIDPDPAQIEVAQQIGAQQVELCTAAYAE
                     ATLGARGIHGEGAERAARELQRLKEGAELALRKGLNVAAGHGLTYRNVGALAQIREIT
                     EYNIGHNIIARAIFVGLETAVREMKAVINPT"
     gene            complement(1025..1435)
                     /locus_tag="VGD38_04110"
     CDS             complement(1025..1435)
                     /locus_tag="VGD38_04110"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF009980.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEY0727229.1"
                     /translation="MAENIQLEVVTPERRVLAESVDMVTVPGLGGELGILPGHTPLIS
                     QLQTGVLTYVQDGKSSQLHVSGGFVEVRDDHVSVLAEVAERPEEIDAARAKLSRDRLE
                     KQLNQWSGTEEDFEIARAKLDRSLVRLQLASPSR"
     gene            complement(1439..>2715)
                     /gene="atpD"
                     /locus_tag="VGD38_04115"
     CDS             complement(1439..>2715)
                     /gene="atpD"
                     /locus_tag="VGD38_04115"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEY0727230.1"
                     /translation="MMAIDTGGPITMPVGEGTLGRVLNVIGEPVDTLGPVKHDKRYPI
                     HRHAPTFEEQSTELQMFETGIKVIDLIQPFLRGGKIGLFGGAGVGKTVIVMELINNIA
                     KARSGFSVFAGVGERTREGNDLLREMVESQVIQFGEEFNKNFHDTGKFDLTKVDMNAI
                     GQSKVALIYGQMTEPPGARLRVALSGLTVAEYFRDQGLDVLLFIDNIFRFTQAGSEVS
                     ALLGRMPSAVGYQPNLATEMGEMQERITSTKTGSVTSIQAVYVPADDYTDPAPATTFA
                     HLDAVTALSRQIVELGIYPAVDPLASSSRILDPRVIGQEHYDTAQDVKRVLQRYKDLQ
                     DIIAILGLDELSDEDKLIVSRARKIQKFFSQPFFVAAQFTGLEGKYVKLEDTVRGFRE
                     LVDGKHDDLPEQAFYMVGTIEEAIEKAKTIAQ"
BASE COUNT          565 a          831 c          792 g          527 t
ORIGIN      
        1 tgagcgtgtg ccggccgctc gtcgaagccg cgactgtcga tcggtgtggt ttcgacgtcg
       61 aactgctgta cctggcgttt cgcgcgggat tgcgactgaa ggaagtgcct gttcgttggg
      121 accacaacga aggcagcaag ataagtttga tcagtgacag ttttcgtatg ctgagcgaag
      181 tgggattgat tcgccagcag gcgcggcgcg gcgtttacga cagcgccatc agagcggtgc
      241 acgagttaaa agaaataggt tcttaggttc tataatgcgt ccatgaccgc acgcctcaac
      301 atcaacatcg atcacgtcgc caccgtgcgc caggcgcggc gcgctcccga accgagcgtg
      361 atcgccgcgg cgatggccgc cgaacaagcc ggcgcggatg gcatcaccgt tcacctgcgc
      421 ggcgaccgcc gtcacataca ggatctcgac atcaggttgt tgcgcgattc agtcacaact
      481 tatctcaacc tcgagatggc tgcgactgac gagatgctcg acatcgcgtt acaaacgaca
      541 cccgacgcag tcacgctcgt cgcggaacga ccgaacgaga tcacgaccga aggcgggctc
      601 gacgcgaaag caaacatcgt cgtcgtcagc aaagccgtgg accggctgcg cgaagcgaac
      661 atcatggcga gcttgtttat cgatcccgat ccggcgcaga tcgaagtggc ccaacagatc
      721 ggcgctcagc aggttgaact ctgcacggcg gcttatgcgg aagcgacgct cggcgcgcgt
      781 ggtattcacg gcgaaggagc cgaacgtgct gcgcgtgaat tacagagatt gaaagaaggc
      841 gctgagcttg cgctgcgtaa aggattgaac gttgcggcgg gccacggcct gacgtataga
      901 aacgtcggcg cgctggcgca gatacgcgag atcaccgaat acaacatcgg ccacaacatc
      961 atcgcccgcg caatttttgt gggactggaa accgccgtga gagaaatgaa ggcggtgata
     1021 aatcctacct agacggcgaa gcgagctgta atcgcaccag cgatcggtcc agcttagcgc
     1081 gcgcgatctc gaagtcctct tccgttccac tccactgatt cagttgcttc tcgagccggt
     1141 cgcgcgagag cttcgcgcgc gcggcgtcga tctcttccgg ccgttccgca acctcagcca
     1201 gcactgaaac gtgatcgtcg cgcacctcga cgaacccgcc cgacacgtgc aactgagaac
     1261 tctttccatc ctgcacgtaa gtgagcacgc ccgtctgaag ctgcgaaatc aacggcgtgt
     1321 gtcccggcaa aattcccagc tcaccgccca aacccggcac ggtgaccata tcaaccgact
     1381 ccgcgagcac acgccgttca ggtgtaacta cttcgagttg aatattctcc gccatatttt
     1441 attgagcaat cgtcttcgct ttttcgatcg cctcttcgat ggtgccgacc atgtagaacg
     1501 cctgctcggg cagatcgtcg tgcttgccgt cgaccagttc gcggaagccg cgcaccgtgt
     1561 cttcaagctt gacgtacttg ccttcgagac ccgtgaactg cgcggccacg aagaacggct
     1621 gcgagaagaa cttctgaatc ttgcgcgcgc gcgaaacgat cagcttgtct tcgtcggaaa
     1681 gctcgtcgag acccaggata gcgatgatgt cctgcaggtc tttgtaacgc tgcaacacgc
     1741 gcttcacatc ctgcgcggtg tcgtagtgct cctgaccgat gacgcgcgga tcgagaatgc
     1801 gcgacgacga cgcgagcggg tccaccgccg gataaattcc cagctccacg atctgtcgcg
     1861 acaacgcggt aaccgcgtcg aggtgcgcga acgtcgtcgc cggcgccgga tcggtgtagt
     1921 cgtccgcggg cacgtaaaca gcctgaatcg aagtaaccga acccgtcttg gtcgacgtga
     1981 tgcgctcctg catttcgccc atctcggtcg cgaggtttgg ctgataaccc accgccgaag
     2041 gcatacgtcc gagcagcgcg gacacttccg aacccgcctg cgtgaagcgg aagatgttgt
     2101 cgatgaacag cagcacgtcg agaccctgat cgcggaagta ctcggcgacc gtcaggcccg
     2161 acaacgccac gcgcaaacgc gcgcctggcg gctcggtcat ctgtccgtaa atgagcgcca
     2221 ccttcgactg cccgatggcg ttcatgtcga ccttggtcag gtcaaacttg ccggtgtcgt
     2281 ggaaattctt gttgaactct tcgccaaact ggataacctg cgactcgacc atttcgcgca
     2341 acaggtcgtt tccttcgcgc gtgcgctcgc ccacaccggc aaacaccgag aagccggaac
     2401 gcgctttcgc gatgttgttg atcaactcca tcacgataac ggtcttgccg acgcccgcgc
     2461 cgccgaacag accgatcttg ccgccgcgca agaacggctg aatcaggtcg atgaccttga
     2521 tgccggtctc gaacatctgg agttcggttg actgctcttc gaatgtcggt gcgtgacggt
     2581 ggatgggata gcgcttgtcg tgcttcaccg ggccgagtgt gtccacgggt tcgccgatca
     2641 cgttgagcac acggccgagt gttccctcgc cgactggcat cgtgatcgga ccgccggtgt
     2701 cgatcgccat catgc
//
LOCUS       DASWTX010000267         3227 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_263166, whole genome shotgun sequence.
ACCESSION   DASWTX010000267 DASWTX010000000
VERSION     DASWTX010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3227
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263166"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..857
                     /locus_tag="VGD38_04120"
     CDS             <1..857
                     /locus_tag="VGD38_04120"
                     /inference="COORDINATES: protein motif:HMM:NF019040.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1501 domain-containing protein"
                     /protein_id="HEY0727231.1"
                     /translation="TFPSNVSIAGINLFLTGVDTRQLAVADSNTTLANVLQLNMSGSS
                     SEQASRLVAFNDLRTLDNNFKLVKAASDTRSSSIQTDNALSSVNPTLATVFPNTGIGR
                     QLKQVALLIKACTDPTAGINLKRQIFFTQIGGFDHHSAEINGQINLLTQVSQAISAFY
                     AATVELGIQDKVTTFTMSDFGRTFQPAGTGVNAVGTDHAWGNHHLIVGGAVLGHTLYG
                     TYPILRLGGPDDTDGGTNPRGRWIPTTSVEQYAATLATWYGLSTADLPAVFPLINRFS
                     TANLGFLA"
     gene            864..>3227
                     /locus_tag="VGD38_04125"
     CDS             864..>3227
                     /locus_tag="VGD38_04125"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEY0727232.1"
                     /translation="MGERVRLILLPALLAGLLGFLLTYDTGTSRVHAFSAGPPAGYTG
                     APQEEPEACAECHVPPDAGTGKISITAPQTYVPGQTYPITVTHTNADLTRLRWGFELT
                     VLDNASDEKAGELQSIDGLTQVLNNAGPNSARQYIEHTAAGTFIGQQNGASWTFNWTA
                     PSTDVGPVTFYTAGNQANNDGNTSGDYVYKTFVAVAPASSTPDFALSIDPVSRSVVPG
                     GNVLYTVTVTPLAGFTGQVNLSTTGVPAGVATTFTPASINITDANSKTSVLSLGTGTS
                     TPVGNHPFNVNAQSGPTSHLVPANLQVVSSSSVDLSLTKTASPNPGQAAAPLSYRITV
                     TNNGPATATNVVVTDTLPGGVAFGSASATQGNCNGTGPVNCNLGTLAVVSSAIVTIVV
                     TPASPGQIVNTASVTANENDFDSTNNSDSTTTVIQPAAASPVMLDDNLTVSTVISGLD
                     QPTSMAFIGPNDFFVLERATGKVKRIVDGALHSTPLDLAVNNASERGLLGIALHPGFA
                     QNGFVYLFWTESTTGVDTANIDQAPLLGNRVDRFVWNGSTLTLDRNVTRLRALQQDGG
                     QPARGNHNGGVLRFGPDGKLYVIFGDNGRRGFLQNITSGGPVPDDQFGGPEPDNAHLT
                     GVVLRLNDDGSTPSDNPFVDAPTNLTGEAAANIKKVFAYGVRNSFGMDFDPLSGALWT
                     QENGDDAYDEINRVTPGFNGGWIQTMGPVSRVDEYRSIEMTYGVGNLQQLRWPPSNIA
                     TTPQQAISRMFMLSGAQYIDPEFSWKYAVAPSPIGFVRGRGLGAQFEG"
BASE COUNT          675 a          935 c          949 g          668 t
ORIGIN      
        1 cgactttccc gagcaacgtt tcgatcgcgg gtatcaatct gtttttgacc ggcgtcgaca
       61 cgcggcagct tgcggttgcc gattcgaata caacgttggc gaacgtgctg caactcaaca
      121 tgtctggttc gtcgagcgaa caagcatcgc gtttagttgc tttcaacgac ctgcgcacgc
      181 tcgacaataa tttcaaactc gtgaaagccg cgagcgacac gcgttcgagc tccattcaaa
      241 cggacaacgc gctgagtagt gtgaatccga ctctcgcaac agtcttcccc aataccggga
      301 tcgggcgtca actcaaacaa gtggccttgc tgatcaaggc gtgtaccgat ccaacggcgg
      361 gcatcaactt gaagcgccag atcttcttca cgcagatcgg cggcttcgat caccactccg
      421 ccgagataaa cgggcaaata aatttgttga cgcaagtgag ccaggcgatc agcgcgttct
      481 acgccgcgac tgtcgagctt ggtattcagg acaaggtaac gacgttcacg atgtctgact
      541 tcggccgcac atttcaaccc gccggcacgg gcgtcaatgc ggtcggcacc gatcacgcgt
      601 ggggaaatca ccacctgatc gtcggcggcg cggtgctcgg tcacacgctt tacggaacat
      661 atccgatact gcgtctcggc ggacccgacg atactgacgg cggtacaaat ccgcgcggcc
      721 gctggattcc gacgacgtct gtcgaacaat atgccgcgac gttggcgacg tggtatggtc
      781 tgtcgactgc cgatcttccg gcagtgtttc cgctaatcaa tcgtttctcg accgcgaatc
      841 tgggtttcct ggcgtaaaca aaaatgggtg aacgggtccg actgatctta ttaccggcgc
      901 tgctcgccgg tctcctcgga ttcctgttaa cttacgacac gggcacgtcg cgcgttcatg
      961 ctttctcggc tggaccacct gcgggttaca cgggcgcgcc gcaggaagag ccggaagcgt
     1021 gcgctgaatg tcatgtgccg cccgatgcgg gcacgggcaa gatctcgatc accgcgccgc
     1081 agacttacgt tcccggacaa acctatccga tcaccgtcac gcacacgaat gccgatctga
     1141 cacgattgcg ttggggattt gaactgaccg ttctcgataa cgcgtcggat gagaaggccg
     1201 gcgaactgca aagcatcgat ggcttgacgc aggtgctgaa caacgctggt ccaaattccg
     1261 cgcgccagta catcgagcac acggccgccg gcactttcat tggacagcag aacggtgcga
     1321 gttggacgtt caactggact gcgccgagca ctgatgttgg accagtcacg ttctacaccg
     1381 ccggcaacca ggcgaataac gacggcaaca cgtcaggtga ttacgtctat aagacctttg
     1441 ttgcggtggc gccggcttcg agcactcctg atttcgcgct cagtatcgat ccggtgtcgc
     1501 gcagcgttgt gccgggtggc aatgtgcttt ataccgtcac ggtcacaccg ctcgccggct
     1561 ttactggtca ggtgaatttg agcacgacgg gcgtgccggc gggagttgcg acgactttta
     1621 caccggcatc aatcaacatc acggacgcca attcaaagac gtcggttctg tctttgggga
     1681 cgggcacgag cacgccggtt ggcaatcatc cgttcaacgt caacgcgcag tctggtccaa
     1741 cgtcgcattt ggtgccggcg aatttgcagg ttgtaagttc gtcgagtgtt gacctgtcat
     1801 tgaccaagac cgcatcgccc aatcctggac aggccgcggc tccgctctcg tatcgaatca
     1861 cggtgacgaa taacggcccg gcaacagcga cgaacgtagt cgtgacggat acgttgccgg
     1921 gcggtgttgc tttcggttct gcgtctgcga cgcagggaaa ttgcaacggc actggtccgg
     1981 tgaattgcaa tctcggcacg ctcgcggttg tcagcagcgc catcgtaacg atcgtcgtca
     2041 cgcctgcatc gcccggacag atcgtcaata cggcgagtgt caccgcaaac gaaaacgatt
     2101 tcgattcgac gaacaacagc gacagcacga cgaccgtgat tcaaccggca gccgcgtcgc
     2161 ccgtcatgct cgacgacaat ctcactgtca gcaccgtcat ctccggactc gatcagccga
     2221 cgagcatggc gtttatcggg ccgaacgatt tctttgttct ggaaagagcc actggcaagg
     2281 tcaagcgaat cgtcgacggc gctttgcaca gcacgccact cgatctagca gtcaacaacg
     2341 cgtcggagcg cggtctgctc ggcatcgcac tgcatcccgg ctttgcacag aacggttttg
     2401 tttatctctt ctggaccgaa agcacgacgg gagtcgatac cgcgaacatc gatcaggcgc
     2461 cgctactcgg gaaccgtgtc gatcgctttg tctggaacgg ctcaacgctc acgctcgatc
     2521 gcaacgtgac taggctgcgg gcgttgcaac aggacggagg ccagcctgcg cgcggcaatc
     2581 acaatggcgg cgtgttgcgc tttggtcctg acggcaagct ctacgtcatc ttcggcgaca
     2641 acggccggcg cggattcttg cagaacatca cgagtggtgg tccagtaccg gacgatcagt
     2701 ttggtggacc agaaccggat aatgcgcacc tgaccggcgt tgtgctgcgg cttaacgacg
     2761 acggttcgac gccgtccgac aatcctttcg tcgacgcgcc gacaaacctg accggcgaag
     2821 ctgccgcaaa tatcaagaag gtgtttgctt acggcgtgcg caacagcttc gggatggact
     2881 tcgatccgtt gagcggcgcg ttgtggacgc aggagaacgg cgacgatgcg tacgatgaga
     2941 tcaatcgcgt gactccgggt ttcaacggcg gctggataca gacgatgggg cctgtgagcc
     3001 gtgtcgatga ataccgttcg atcgagatga cgtacggcgt tggaaacctg cagcagcttc
     3061 gttggccacc ttcgaatatc gcgacgactc cgcagcaggc gatatcgcgg atgtttatgc
     3121 tgagcggcgc gcagtatatc gatccggagt tcagttggaa gtatgccgtt gcgccgtcgc
     3181 cgattgggtt tgtcagaggc cgcgggttgg gtgcgcagtt cgaaggc
//
LOCUS       DASWTX010000268         1656 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_285476, whole genome shotgun sequence.
ACCESSION   DASWTX010000268 DASWTX010000000
VERSION     DASWTX010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1656
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285476"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1656
                     /locus_tag="VGD38_04130"
     CDS             <1..>1656
                     /locus_tag="VGD38_04130"
                     /inference="COORDINATES: protein motif:HMM:NF036484.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727233.1"
                     /translation="AFDTIYAEGQRRYVESLSAYARQFLERMDKPDVDEVSGIAPAIA
                     IRQKNSTRNPRSTVGTQTEIYDYLRLLFARVGQTFCRVCGRLVSRDSPESAAEEVLST
                     LAEGTRFYVLFPAGAGTAWTDEETEKPARRRASASVRQSITAHVMSLMQRGFTRLYAD
                     GRVIDLNSPDDYTRTDFKDVFVLVDRLTARDDVRQRLVDSLEICFQEGHGVAVIETAE
                     AEPKRLRFSERFECRYDRTVYATPEPRLFSFNNPYGACPTCQGFGNTIGLDLNLVIPN
                     PGLSLKDGAIEPWTKPQHEWAMSELKQFCRAEKISMTTPFNQLSRADQQAIIEGRGDF
                     GGVRGFFDWLETKKYKLHVRVFLSKYRGYTLCPDCGGGRLRQEARDVKVGARTLPELC
                     SLSIKDASEFFDTLELSTEQTAIAERILFEVRRRLRFLVEVGLDYLTLDRLASTLSGG
                     EAQRIQLATNLGSSLVGALYVLDEPSIGLHPRDNDRLIRLLKNLRDIGNTVLVVEHDA
                     EMMRSADHILDIGPAAGELGGRVIYEGDFDGLLHDEASLTARY"
BASE COUNT          311 a          430 c          536 g          379 t
ORIGIN      
        1 ttgccttcga cacgatctac gccgaaggac agcgtcgtta tgtcgaatcg ttgtcggcat
       61 acgcgcggca gtttttggag cggatggata agccggacgt cgacgaggtc agcggtatcg
      121 cgcccgcgat tgcgatcagg cagaagaact cgacgcgtaa tccgcgttcg actgtcggca
      181 cgcaaaccga gatttacgat tatttgcgac tgctgttcgc gcgtgtcggg cagacgtttt
      241 gccgcgtgtg tggaaggctg gtgtcgcgcg attcgccgga gtcggcggcg gaagaagtgc
      301 tcagcacgtt ggcggagggc actcggtttt acgtgctgtt tccggccgga gcgggaactg
      361 cgtggacgga tgaagagact gagaagccgg cgcggcggcg cgcgtctgcg tcagtgcggc
      421 aatcgatcac ggcgcacgtg atgagcctga tgcaacgcgg gttcacgcgt ctgtatgctg
      481 acggccgcgt gatcgatctt aactcgcccg acgattacac gcgcaccgat ttcaaagacg
      541 tgttcgtgct tgtcgatcgt ttgactgcgc gtgatgacgt tcgacaacgg ctcgtcgact
      601 cgctcgagat ctgttttcaa gagggacacg gagttgccgt gatcgaaacc gccgaagcag
      661 agccgaaacg gctgcgcttt tcggaacgtt tcgaatgccg ttacgaccgc actgtttatg
      721 cgacacccga gccgcggttg ttcagtttca ataatcctta cggcgcgtgt ccgacgtgtc
      781 agggttttgg caacacgatc ggtctcgatc tgaatctggt aattccgaat ccggggctgt
      841 cgctgaaaga cggcgcgatc gagccgtgga ccaagccgca gcacgaatgg gccatgtcgg
      901 agttgaaaca gttctgccgg gccgagaaga tttcgatgac gacgccgttc aatcagctct
      961 cgcgcgctga tcagcaggcg atcatcgagg gacgcggcga cttcggcggt gtacgcgggt
     1021 tctttgattg gctcgaaacg aagaaataca agctgcacgt gcgcgtgttt ttgtcgaagt
     1081 atcgcgggta tacgttgtgt ccggattgcg gcggtgggcg tttgcgtcag gaagcgcgcg
     1141 atgtgaaggt cggtgcgcgg acgttgccgg agttgtgttc gttgtcgatc aaagacgcgt
     1201 ctgagttttt cgacacgttg gagctttcga ccgagcaaac ggcgattgct gaacgaatcc
     1261 tgtttgaagt gcggcggcga ttgcgatttt tggttgaggt cggcctggat tatttaacgc
     1321 tcgatcgtct cgcttcgaca ctttccggcg gcgaagcgca gcgcattcag ctcgccacga
     1381 atctcggctc gtctttggtc ggcgcgcttt acgtgctcga cgagccctcg atcggtctgc
     1441 atccgcgcga caacgatcgt ttgatccgtt tactgaaaaa cttgcgcgac attgggaata
     1501 cggttttggt ggtcgaacac gacgcggaga tgatgcgttc ggcggatcac attctcgaca
     1561 tcggtccggc cgcgggcgag ttaggcggac gcgtcattta cgaaggcgac ttcgacggtt
     1621 tgttgcacga cgaagcctca ctcactgccc gttacc
//
LOCUS       DASWTX010000269         2155 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_219713, whole genome shotgun sequence.
ACCESSION   DASWTX010000269 DASWTX010000000
VERSION     DASWTX010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2155)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2155)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2155
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219713"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..558)
                     /locus_tag="VGD38_04135"
     CDS             complement(<1..558)
                     /locus_tag="VGD38_04135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727234.1"
                     /translation="MKKFFVIGATVALLALPVAATNLIKVSDNNVQEQCKTEEKDAWY
                     AEFLKIYKNDQAKAFELAKKYLACPPVGEVTEAQQKIIDFLKKWSTAYEEGMRKLQLP
                     QLLYNDKKYPEAYALGREILAKEPDNLTVLVHLGANGYVVAPLKNAQLTAESLDHARK
                     ALALLESGKTIEDWSPLAGKDAALAY"
     gene            complement(867..>2155)
                     /locus_tag="VGD38_04140"
     CDS             complement(867..>2155)
                     /locus_tag="VGD38_04140"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HEY0727235.1"
                     /translation="AAIARPMAIDKAMRDRVQAMIAKDDLTGEDPEVRRVAVNALGHH
                     AGTVVVMDPMTGRVYSVVNQEWALHRGFKPCSTIKLVTGIAGLSENAIPAIATANDGY
                     RTDLTSALARSDNPFFQQVGNKIGADKMVNYARQLGLGEKTGLNVPFEFAGAVPDYNS
                     NLGGRMFSHADGFQVTPLQLGTLVSAMANGGRLLTPQIPRSPKDASKMAPKVRRVLDI
                     SNDVWQRMIPGMVGAVNYGSGRKAYDPTQTVAGKTGTCIGNNGWVGLFTSYAPLANPR
                     LAVVVIAEGSDARRHFPAAVAGEIYRQLNHRFGTAINLQVASTLDDEEKEVADAEAAA
                     ENTEAGEGEESTATSPATSNDSTVKTAPAVPLPAANTDKPALNEPKPTVKRVLMPLNN
                     KPAETQKNGAQPQTNSKTPAANTGTPNEQRPRRIQP"
BASE COUNT          456 a          605 c          586 g          508 t
ORIGIN      
        1 ataagcaaga gccgcatcct taccagcgag cggtgaccaa tcttcgatcg tcttgccgct
       61 ttcgaggagc gccaatgctt tgcgtgcgtg gtccagcgac tcagcggtca actgcgcatt
      121 cttcagcgga gcaaccacgt agccgttagc gccgaggtgc acgagcaccg tcaggttgtc
      181 gggctctttg gcgagaatct cgcgtccgag cgcgtatgct tcaggatatt tcttgtcgtt
      241 ataaagaagc tgcggcagct ggagcttgcg catgccttct tcgtaagcgg tggaccactt
      301 cttcaggaag tcgataatct tttgctgcgc ttcagtgact tcgccgaccg gcggacaagc
      361 gagatacttc ttcgcgagtt cgaaggcctt ggcttggtca ttcttataaa tcttgaggaa
      421 ctccgcgtac cacgcgtcct tttcctctgt cttacattgt tcttgaacgt tgttatcaga
      481 aaccttgatc agattggtcg cagcaacggg cagagcgagc aacgcgactg tcgcaccgat
      541 cacaaagaac ttcttcattg ttttcattag ttgtcggaac ctccaaaaat cttcattcag
      601 caatcgcgca agaggctgag cccttcaagc tacgttacag ggactttagg atgcaaatga
      661 tacaaaaatc ggttgccgat ctacgtatcg ggggaatggg ctcttgattt agaactagta
      721 aataacgagc gcccgcaata ttcctgcaac tttgtcaaat gtgtcaaggg tgcgcagtgc
      781 acccgtcaac gaaaacttac aaaaaaattt gcgccggaga ttaaggttcc ggcgcaaata
      841 aatcaaaact gttctttaag tctgtcttat ggctgaatcc ggcgcggccg ctgttcgttc
      901 ggagtgcctg tgttggcagc gggcgtcttc gagtttgttt gcggttgcgc accgttcttc
      961 tgcgtttcgg caggtttgtt gttgagcggc atcaacacgc gctttacagt cggcttcggt
     1021 tcattcagcg cgggcttgtc tgtgttcgct gcgggcagcg gaactgcggg cgctgttttc
     1081 accgtcgagt cattagaagt tgcgggactc gtggccgttg actcttcacc ttcaccggcc
     1141 tcagtgtttt ccgcggcggc ttcagcatcg gcgacttcct tctcttcgtc gtcgagggtc
     1201 gaagcgactt gcaggttgat ggcagtaccg aagcgatgat tcaactgccg gtagatttct
     1261 ccggcgactg cggccgggaa gtgacggcga gcatcgctgc cttccgcgat cacaacgact
     1321 gcaagacgcg gattcgcgag cggcgcgtaa gaagtaaaca aaccaaccca accattgtta
     1381 ccgatgcacg tgccggtttt gccggccacg gtctgcgtcg ggtcataagc cttccggccg
     1441 gaaccgtagt tcacggcgcc aaccattccc ggaatcatgc gctgccaaac atcattcgag
     1501 atgtccagca cgcggcgaac cttcggcgcc atcttgctcg cgtctttcgg actgcgcgga
     1561 atctgcggag tcagcaagcg gccaccgttc gccatcgcgg acacgagcgt gcccaactgc
     1621 aacggcgtca cctgaaaacc atcggcgtgc gagaacatgc gcccaccgag attggaattg
     1681 tagtccggca ctgcgccggc aaactcgaac ggaacattca gccccgtctt ctcgccgagc
     1741 ccgagctggc gagcatagtt gaccatcttg tcggcgccga tcttgttgcc gacttgctgg
     1801 aagaaaggat tatccgagcg ggccaacgct gaagttaaat cagttctgta tccgtcattt
     1861 gcagtagcga tagccgggat cgcgttttca gaaagaccgg caataccagt gacgagcttg
     1921 atcgtcgagc acggcttgaa accacgatgc aacgcccact cctgattcac aactgagtag
     1981 acgcgtcctg tcatcggatc catgacgaca accgtaccag cgtgatggcc aagcgcgttc
     2041 acggcaacgc gacgcacttc aggatcttca ccagtcagat catctttcgc gatcatcgcc
     2101 tgcactcgat cgcgcattgc tttgtcgatc gccatcgggc gagcgatcgc agcac
//
LOCUS       DASWTX010000270         1507 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_48128, whole genome shotgun sequence.
ACCESSION   DASWTX010000270 DASWTX010000000
VERSION     DASWTX010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1507
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48128"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1224)
                     /locus_tag="VGD38_04145"
     CDS             complement(<1..1224)
                     /locus_tag="VGD38_04145"
                     /inference="COORDINATES: protein motif:HMM:NF016021.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727236.1"
                     /translation="MGTLNIDRYHAAMGDASFKDVTRLRDQPLSDAEATFYVTQRKLP
                     FAPCLGHERLVRLLVDSQIDRPRLRFLEQDRGGLKLFAKAIEDIQFVGKIRTVRPGTI
                     VFAQEPFADISGAFGMTQAQEIKFEHAFDLPMTTASTAMQFRMAAGDDRWLSDFSLRR
                     NGDIERAVDIAVYAFIGGFNDTSNLEAAFRLDIPAVGTEAHYWQQAYVEYMYEPEIEP
                     RTGKPKHFEQVAFERWLDANPNGTTLLLDTIDVYMGAVHAAMAATSTEARRNAFKGFR
                     VDSGNLAELGEWCLNFFAANGLTGLRPNLTGDLDVERIKQVVEEFPEVGGFGVGTKLS
                     SEVRTVAGVIFKMCLIKDLPTLKASNSEEKITLPGRLQLFRGSDADGNYVGDVIGLND
                     EAIEIPAAVKVERLLG"
     gene            complement(1291..>1507)
                     /locus_tag="VGD38_04150"
     CDS             complement(1291..>1507)
                     /locus_tag="VGD38_04150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727237.1"
                     /translation="FRELTGAGQELFKDKDLEPKHKEIIFETFLHGFSTGSIVMHMAF
                     SQFIFGLLKTLDLRERFDKGLEDDLYV"
BASE COUNT          312 a          431 c          427 g          337 t
ORIGIN      
        1 gcccagcagt cgttcgactt taacggctgc gggaatctcg atcgcttcgt cgttgagccc
       61 gatgacgtcg ccgacataat ttccgtcagc gtcgctgccg cgaaacaact gcagccgtcc
      121 gggcagcgtg atcttttctt cggagttgga cgctttcagt gttggcaggt ccttgatcag
      181 gcacatcttg aagatcacgc ccgcaacggt gcgcacttcg ctcgacagtt tcgtaccgac
      241 accaaagccg cccacttccg gaaactcttc gacgacctgt tttattcgtt cgacgtcgag
      301 atcgccggtg aggttcggac gcaatcccgt cagaccattc gccgcgaaaa agttaagaca
      361 ccattcgccg agctcggcga gattgccgga atcaacgcga aagcctttga acgcattacg
      421 ccgcgcttca gttgacgtcg cagccatcgc ggcatggacc gcgcccatgt aaacgtcgat
      481 cgtgtcgagc agcaacgtcg ttccgtttgg gttcgcgtcg agccagcgtt cgaaggcgac
      541 ctgttcgaaa tgtttcggct tgcccgtgcg cggctcgatc tccggctcgt acatgtactc
      601 gacgtaagcc tgttgccagt aatgcgcttc ggtgccgacg gcgggaatgt cgagacgaaa
      661 tgcggcttcg agattcgacg tgtcgttgaa gccgccgatg aacgcgtaaa cggcgatgtc
      721 gaccgcgcgt tcaatgtcgc cgttgcgacg cagcgagaag tctgacaacc agcgatcgtc
      781 gccagcggcc atgcgaaact gcatcgccgt gctggccgtc gtcatcggca gatcgaacgc
      841 gtgctcgaac ttgatctcct gcgcctgcgt catgccgaac gcgccgctga tgtcggcgaa
      901 cggttcctgc gcgaagacga tcgttcccgg acgcacggtc ctgatcttgc cgacgaactg
      961 gatgtcttcg atcgcttttg caaacagctt cagtccgccg cggtcctgtt cgagaaaacg
     1021 aagccgcggg cgatcgatct ggctgtcgac gagcaggcgc acgagccgct cgtggcccag
     1081 acatggtgcg aagggaagtt tgcgttgcgt gacgtagaag gtggcttcgg cgtcgctgag
     1141 tggttgatcg cgaaggcggg tgacgtcttt gaacgacgcg tcgcccatcg ccgcatggta
     1201 acgatcgata ttcagggtgc ccacgctaga ctatccgttt gtacgggcga ctcagtctac
     1261 cgtttgttgc aacagtctca aacctgcggt ctatacatat aaatcgtctt ccaacccttt
     1321 atcaaaacgt tcccgtaaat cgagcgtctt gagaagaccg aaaatgaatt gagagaaggc
     1381 catgtgcatg acgatggacc cggtagagaa tccgtgaagg aacgtctcaa aaattatttc
     1441 cttatgtttt ggttcgaggt ccttatcctt aaataactct tggccagctc ccgttaactc
     1501 acgaaag
//
LOCUS       DASWTX010000271         3948 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_197735, whole genome shotgun sequence.
ACCESSION   DASWTX010000271 DASWTX010000000
VERSION     DASWTX010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3948)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3948)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3948
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197735"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..576)
                     /locus_tag="VGD38_04155"
     CDS             complement(<1..576)
                     /locus_tag="VGD38_04155"
                     /EC_number="2.4.2.4"
                     /inference="COORDINATES: protein motif:HMM:NF004490.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006206 - pyrimidine nucleobase metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine phosphorylase"
                     /protein_id="HEY0727238.1"
                     /translation="MRPQDVIRKKRDGQSLSREEIEFFVSGVTSGRIADYQVSALLMA
                     IYLNGMDQDEQQILTEAMLNSGNILDFSDIPKPKADKHSTGGVGDKTSIIIAPLVAAC
                     GVCVPMISGRGLGHTGGTLDKLESIPGYSVNLSATEFKQVLQRVGYAMAGQTAELAPA
                     DKKMYALRDATSTVEAIPLIVASIISKKGAAG"
     gene            complement(586..1062)
                     /gene="ispF"
                     /locus_tag="VGD38_04160"
     CDS             complement(586..1062)
                     /gene="ispF"
                     /locus_tag="VGD38_04160"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HEY0727239.1"
                     /translation="MIRIGIGHDTHRLVEGRPLVLGGVQIASDRGAEGHSDADALAHA
                     IADAILGALCEGDIGVHFPDKDPQWRDANSLELLSRVMWLVRERSLHVVNVDSTILLE
                     TPKLRPYVEAMRENIAGVLGIDAGCVSVKAKTGEGLDAVGQGLAVTAQAAVLMESN"
     gene            complement(1059..1739)
                     /gene="ispD"
                     /locus_tag="VGD38_04165"
     CDS             complement(1059..1739)
                     /gene="ispD"
                     /locus_tag="VGD38_04165"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: protein motif:HMM:NF013308.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HEY0727240.1"
                     /translation="MNIAIIAAAGTGSRMASNRPKQFLQLAGTPIIFHTLKPFELCDS
                     IQEVIVVLPADESAAFLAQAGKQGLRKLTRVVPGGVTRADSVKRGLMSIRAATAEIVA
                     VHDGVRPFVTVEEIDETVAAARRDGAAILATPVTDTIKVIDGDTVVETLARQHLRQAL
                     TPQCFRYDLLRQAYDVADVTDPALTDESALVERLGHKVTIVEGSPRNIKITTPRDLLI
                     AETFLKDE"
     gene            complement(1767..2876)
                     /locus_tag="VGD38_04170"
     CDS             complement(1767..2876)
                     /locus_tag="VGD38_04170"
                     /inference="COORDINATES: protein motif:HMM:NF014047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HEY0727241.1"
                     /translation="MHADVVLIRLLIPAFLISAGYILKPIANDPWISAGAGGLIAICI
                     IVFELRIRRATLKTLIGAAVGSILGILGAYLIGSLIDRQDSIDPEAKTFLTLSLTFFM
                     AYVGLMVGAAKGDYLDLSALGGIFSDKVARRDLKILDTSVIIDGRIADVAETGFLTGS
                     LIIPQFILRELQQVADSPDSSKRQRGRRGLDMLNRLQNNSSLDIQIVETDFPSVREVD
                     LKLIELGKQLDAVIVTNDFNLNKVSQLRGVSVLNINELANALKPVVLPGEAMRVFILK
                     EGKEYNQGVAYLDDGTMVVVDNARRLIGKNADIAVTSVLQTTAGKMIFGRLWEEAENG
                     HGDIHRTNGASRRMRDTRSGPHPVRITDSEPITES"
     gene            complement(2956..3177)
                     /gene="infA"
                     /locus_tag="VGD38_04175"
     CDS             complement(2956..3177)
                     /gene="infA"
                     /locus_tag="VGD38_04175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEY0727242.1"
                     /translation="MAAEDLIPASGTIIDKQPNAFFKVRLDNSEHVVLAAISGKMRKN
                     RIRILVGDRVSVEMSPYDLSRGRITYRFK"
     gene            3348..3749
                     /locus_tag="VGD38_04180"
     CDS             3348..3749
                     /locus_tag="VGD38_04180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727243.1"
                     /translation="MNIVVSTYLVYLAISIALTIWVAHTLHKNGRIFLVDVFHGNEAL
                     ADSVNHLLVVGFYLINMGYVTMALKLGYAINSAQEGIEALSVKIGMVLIVLGGMHFFN
                     LFVFSRMRRRSVAHNHPPVGPDSFTAVKQEA"
     gene            3755..>3948
                     /locus_tag="VGD38_04185"
     CDS             3755..>3948
                     /locus_tag="VGD38_04185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DCC1-like thiol-disulfide oxidoreductase family
                     protein"
                     /protein_id="HEY0727244.1"
                     /translation="MFALTVLYDPECGLCRRSHEWLAQQAKLVELNFVPCASEEARKR
                     FPFLDHDLTKQDLTVISPDGA"
BASE COUNT          812 a         1165 c         1093 g          878 t
ORIGIN      
        1 tccggccgcg ccttttttgg aaatgatgga cgccacgatc agcgggatcg cttcgactgt
       61 cgaagtcgcg tcgcgcaacg cgtacatctt tttgtccgca ggcgcgagtt ccgcggtctg
      121 tccggccatc gcataaccga cgcgctgcaa cacctgcttg aactcagtcg cgctcaggtt
      181 aacgctgtaa cccggaatcg attcgagctt gtcgagcgtg ccgcccgtgt ggcccaaacc
      241 gcggccggaa atcatcggta cgcacacgcc acacgccgca acgagcggcg cgatgatgat
      301 cgacgttttg tcccctacgc cgccggtcga gtgtttgtcc gcttttggtt tgggaatgtc
      361 ggagaagtcg agaatgttgc cggagttgag catcgcctcg gtgaggatct gctgctcgtc
      421 ctggtccatg ccgttgaggt agatggccat caacagcgcg ctgacctggt aatccgcaat
      481 acggccgctt gtgactccgc tgacgaagaa ttcgatctct tcacgcgaaa gactctgccc
      541 gtctcgcttt tttcttatga cgtcctgtgg tctcaagctg cttccttagt tgctctccat
      601 aagcacagcg gcctgagccg taactgcgag cccctggccc accgcatcga gtccttcgcc
      661 cgtcttcgct ttcacgctca cacagccggc gtcaattccc aaaacaccgg cgatgttttc
      721 acgcatcgct tcgacgtacg gccgaagctt cggcgtttcc agcagaatcg tcgaatcaac
      781 gttaactaca tgcagactgc gttcgcgcac cagccacatc acgcgcgaaa gcagttccaa
      841 actgttcgcg tcgcgccact gcggatcttt atccggaaag tgaactccga tatcgccctc
      901 gcacagcgcg ccgagaatcg cgtcggcaat cgcgtgggcc aacgcgtcgg cgtccgaatg
      961 tccctcggcc ccgcgatcgg aagcgatctg gactccaccg agcacgagcg gccgcccttc
     1021 aactaaccga tgcgtgtcgt ggccgattcc gatccgtatc attcgtcctt caaaaacgtc
     1081 tcagcgataa ggaggtcacg gggcgtggtt atcttaatat ttctcgggct tccttccaca
     1141 atcgtcacct tgtggccgag ccgttccacg agtgcgctct cgtccgtcaa tgccgggtcg
     1201 gtgacgtccg cgacgtcgta agcttgacgc agcaagtcgt aacgaaaaca ctgcggcgtt
     1261 agtgcttgtc ttaaatgttg ccgcgccagc gtctcgacaa cagtgtcgcc gtcaataacc
     1321 ttgatcgtgt cggtgaccgg ggtcgcgaga atcgctgcgc cgtcgcgccg cgcggctgcc
     1381 acagtttcat ctatctcttc aacagtcacg aacggccgca caccgtcatg caccgcaacg
     1441 atttccgcag tcgccgctcg gatcgacatt agaccacgtt tcaccgaatc agcgcgcgtc
     1501 acaccaccgg gaaccacacg cgtgagcttc cgcaatccct gtttgcccgc ctgagccaaa
     1561 aacgccgctg actcatcggc cggcaaaacc acgatcactt cctgaatgct gtcacacagc
     1621 tcgaaaggtt taagagtgtg aaagattatt ggagttcctg caagttgcag aaactgtttt
     1681 ggccgattgc tcgccatccg ggacccggtt ccggcggcgg caatgatcgc tatgttcatg
     1741 aacagggatt gggaaaacgg ggcgcgtcag ctctccgtga tgggttcgct gtcggtgata
     1801 cgcaccgggt gcgggccgct gcgcgtgtct cgcatacgtc gcgaggcgcc gttggtgcgg
     1861 tgaatgtcgc cgtggccatt ctctgcttct tcccagagac ggccgaagat catcttgccg
     1921 gcagtggttt gcaacacgct ggtcacggcg atgtcggcgt tcttgccgat caggcggcgc
     1981 gcgttgtcga ccacgaccat cgttccatcg tcgagatagg ccacaccctg gttgtattcc
     2041 ttgccttctt tcaggatgaa cacgcgcatc gcttcgccgg gcagcacgac gggtttgagc
     2101 gcgttggcca gttcattgat gttcagcacg ctgacgccgc gcaactgcga cactttgttg
     2161 agattgaaat cgttggtcac gatcaccgcg tcgagctgtt tgccgagttc gatcagcttg
     2221 agatcgactt cgcgaactga aggaaaatca gtttcgacga tctggatgtc gagcgagctg
     2281 ttgttctgca aacggttcag catgtcgaga ccgcgtcgtc cacgttggcg cttggacgag
     2341 tcgggcgaat cggcgacttg ctgcaactcg cgcaggatga attgcggaat gatcagactg
     2401 ccggttagaa atccggtttc ggcgacgtcg gcgatgcggc cgtcgatgat cactgacgtg
     2461 tcgagaattt tcagatcgcg gcgcgcgact ttgtcgctga agattccgcc gagggccgaa
     2521 aggtccagat agtcgccttt ggcggcgccg accatgaggc ccacgtaggc cataaagaaa
     2581 gtcagcgata aagtcagaaa cgttttggct tcagggtcga ttgaatcctg gcgatctatt
     2641 agtgaaccga tcaggtaagc gccgagtatg ccgagtatcg aaccaaccgc tgcgccgatg
     2701 agagttttga gggtggcgcg gcgaattcgc agctcaaaaa cgatgataca gatcgcgatc
     2761 aacccgcccg caccagccga gatccatgga tcattggcga tcggtttcag gatgtatccc
     2821 gctgagatca gaaatgccgg gattagtagc cgtatgagaa cgacatcggc atgcataacg
     2881 aaggcatact accacgccgc tattgctagc gtcacggaaa tcgcgtcgga acgcgtctat
     2941 taaccgctta tagggttatt taaatcgata agtaattctg ccgcgcgaca aatcgtaagg
     3001 tgacatctca acacttacgc gatcgccgac gagaatgcga atgcgattct ttcgcatttt
     3061 gcctgagatg gctgcgagca cgacgtgttc gctgttatcg aggcggactt tgaagaaggc
     3121 gttgggctgc ttatcgatga tggtgcccga cgccggaatt agatcctctg ctgccaatta
     3181 atttctcctt taagggtgaa ctgagacgct tgcgcgcggc acacgataac acacctttgg
     3241 caaaacaccg attttgaacc tgttcaaaaa acttcttgac acccacctcg aacaggcgta
     3301 ggctgcggtt agttgaacgt gttcaaattc agctaaggag gctgaccatg aatatcgtag
     3361 taagcaccta cctcgtttac ctggcgatca gcatcgcact gacaatctgg gtcgcccaca
     3421 ccctccacaa gaacggccgc atcttcctgg tcgacgtctt ccacggcaac gaagcgctcg
     3481 ccgattccgt caatcacctg ctcgtggtcg ggttctacct gattaacatg ggctacgtga
     3541 ccatggccct gaagctcggc tacgcaatca acagcgcgca ggaaggcatc gaggcccttt
     3601 cggtcaagat tggaatggtg ctgatcgtcc tcggcggcat gcacttcttc aatctgttcg
     3661 tcttcagccg catgcgccgt cgcagtgtcg cccataacca tccacccgtc ggaccggatt
     3721 ccttcaccgc cgtgaagcag gaggcgtgac cgccatgttt gccttaaccg tgctttacga
     3781 tcccgaatgt ggtctgtgcc gccgctcgca cgagtggctc gcccaacagg cgaaactggt
     3841 cgagctcaat ttcgttccgt gcgcgtcgga ggaagcgcgc aaacgcttcc cttttctcga
     3901 ccacgatctg acgaagcagg acctgacggt gattagcccg gacggcgc
//
LOCUS       DASWTX010000272         3612 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_263226, whole genome shotgun sequence.
ACCESSION   DASWTX010000272 DASWTX010000000
VERSION     DASWTX010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3612
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263226"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2231)
                     /locus_tag="VGD38_04190"
     CDS             complement(<1..2231)
                     /locus_tag="VGD38_04190"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0727245.1"
                     /translation="MSMVEKAANRVEDQEIVELRQRLEEAEDTLRAIRNGEVDALVVD
                     SPEGEVVYTLTTADYPYRLMIDEMNQGAVSVSPDSIILYSNKNFAGMLGLNGTNVTGT
                     QFGSYLAPEMREQFDRDLREARYQGVRRDYLLKHQTGREVPALISFAKLQPQTNTISI
                     VVTDLTAQKELEEQLRKAKHGLEEQVAVRTKELRDSERRLFRILEHSAADLKAMRQLN
                     EIGARCAQDGNDRERCLEEVLRVAIEISGADKGNIQLVDPVSGALGLTNVLGFDSSFV
                     EFFSDPDNSSACRVALETQQRVIVEDVRQSALFVGTPSLGALTKAGVRAVQATPLVSS
                     MGNVLGVISTHFATTRRPTEQEIRLMDLLARQAADYLERKHVEHEREELLAREHELRN
                     TAEEANRLKDEFLAVMSHELRNPLNVILGYAELLLRSDEVRGAAPLRRMADAVKRNAV
                     AQSKLIRDLLDLSRLRSGKLELNRETVSPVVSIHNAIETVRIEAAEKNITIDVETPHE
                     AVFVKADPVRLEQVIWNLLNNAVKFTPPDGRITVKLELEKEHLILTVADNGQGIDSSF
                     LPHIFEIFRQADSAANRSQSGMGIGLAVVQQLVELHGGSVTAHSGGTGKGASFTIRLP
                     RTGENKSDSKHPLDLTIDSLEGMNVLVVDDSEDTTEMVRHLLEMGGANVTAVTSGFEA
                     LRVARDKQFDVVLSDISMPGMDGFEFLGRLRAQPGYQDLPAIALTGFGRPEDVQRAHA
                     EGF"
     gene            complement(2197..2613)
                     /locus_tag="VGD38_04195"
     CDS             complement(2197..2613)
                     /locus_tag="VGD38_04195"
                     /inference="COORDINATES: protein motif:HMM:NF019309.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circadian clock KaiB family protein"
                     /protein_id="HEY0727246.1"
                     /translation="MADTGIRKSNGPGNGKLKNKPRNATENFEEALKVRPGRRAEYIL
                     RLYVTGSTPRSLRAISNLKRLCDEYLPGAYDLQVIDIYKNPDAARDAQIIAAPTLIKR
                     LPAPLRRFVGDLSNTQKLLIGLDIRDEHGGKSGKPS"
     gene            complement(2613..2969)
                     /locus_tag="VGD38_04200"
     CDS             complement(2613..2969)
                     /locus_tag="VGD38_04200"
                     /inference="COORDINATES: protein motif:HMM:NF019309.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circadian clock KaiB family protein"
                     /protein_id="HEY0727247.1"
                     /translation="MTSTPTKRSRAAKNGHVKQADSGSLNRWNLRLYVAGQTPRSITA
                     FQNLKNICEEYLKGKYHIEVIDLMENPTLARGDQILAVPTLVRKLPQPIRKIIGDLSN
                     TERVLVGLDIQPRQEY"
     gene            complement(2966..>3612)
                     /locus_tag="VGD38_04205"
     CDS             complement(2966..>3612)
                     /locus_tag="VGD38_04205"
                     /inference="COORDINATES: protein motif:HMM:NF018455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HEY0727248.1"
                     /translation="PITNFLAVADEADTKAMLTRLIDFLKKREITAMFTSLTGSTLEI
                     EDSEVGVSSLMDAWILVKNIESNGERNRGLYILKARGIAHSNQVREFLLTDSGIELID
                     AYVGSEGVLMGSARAAQTARESFATRDRETERQRKQRQLRRTQALYEAQLVALRNQFE
                     AEREALVKELEEDQERESTEATQRIEMARLRHADVNVNVEENGARKQRKGAATK"
BASE COUNT          703 a         1075 c          974 g          860 t
ORIGIN      
        1 tagaagccct ccgcatgcgc gcgttgcacg tcttccggcc ggccaaaacc cgtcagcgcg
       61 atcgccggca gatcttgata gcccggctga gcacgcagcc gtccaaggaa ctcaaaacca
      121 tccatgcccg gcatcgaaat gtccgacagg acgacgtcaa actgcttgtc gcgagcgacc
      181 cgcaacgctt caaaaccact ggtcacggca gtcacgtttg cgccgcccat ctccaacagg
      241 tgacgcacca tctcggtcgt gtcttcagag tcgtcgacga cgaggacatt catgccttcg
      301 agcgagtcga tcgtgagatc gagcgggtgt ttcgaatcag atttattttc acccgtgcgc
      361 ggcagcctga tggtaaagct cgcgcccttg ccggtgccgc ccgagtgagc agtgaccgag
      421 ccgccgtgca attccaccag ttgctgaacc acggcgagac cgatacccat gcctgattgc
      481 gaacggttcg cggccgagtc tgcctggcga aagatctcga agatgtgcgg caggaacgac
      541 gagtcgattc cctgcccgtt gtctgcgacg gtcaaaatga ggtgttcctt ttcgagttcg
      601 agctttaccg tgatacggcc gtcgggcggc gtgaacttca cggcgttgtt cagcaggttc
      661 cagatcacct gttccaaccg gaccggatcg gctttgacaa agaccgcctc gtgaggagtc
      721 tcgacgtcga tcgtgatgtt cttctcggca gcttcgatgc gcacggtttc gatcgcattg
      781 tgaattgaaa ccaccggtga caccgtctcg cggttcaact cgagcttgcc gctgcgcaaa
      841 cgcgaaagat ccagcaggtc gcgaatcagt ttcgactgcg ccaccgcgtt tcgcttcact
      901 gcatcagcca tgcgtcgcaa aggagcggcg ccgcgaacct cgtcgcttcg caacaacaac
      961 tcggcgtaac ccaggatcac gttgagcggg ttgcgcagct cgtgcgacat gactgccaga
     1021 aactcgtctt tcaaacggtt cgcttcttcg gccgtgttgc gcaattcgtg ctcgcgcgcc
     1081 agcagctctt cgcgttcgtg ctcgacatgc ttgcgttcga gataatcagc agcctgccgc
     1141 gccagcaggt ccatcaaacg gatttcctgc tcggtcgggc ggcgagtcgt ggcgaagtgt
     1201 gtggagatca cgccgagcac attacccata ctgctcacca gcggagtcgc ctgcaccgcg
     1261 cgcacgcccg ctttggtcaa cgcgccgagc gacggagtac cgacgaaaag cgcgctctgc
     1321 cgcacgtcct ccacgatcac gcgttgctgc gtttcaagag cgaccctgca agccgaagag
     1381 ttatcgggat ccgaaaagaa ctcgacgaac gatgagtcaa aaccaagcac attagtcagg
     1441 ccaagcgcgc ctgacacggg atcgaccaac tgaatgttgc ctttgtccgc gccgctgatc
     1501 tcgatcgcga ctctgaggac ttcctccaaa caacgttcgc gatcgtttcc gtcctgcgcg
     1561 cagcgggcgc cgatctcgtt caactgccgc atcgctttca ggtccgcagc actgtgttcg
     1621 aggattctaa aaagacggcg ttcactatca cgcaattcct tcgtgcgaac tgccacctgc
     1681 tcttcgagcc cgtgcttggc tttgcgcagc tgttcttcca actctttttg ggcggtgaga
     1741 tcggtgacga cgatgctgat cgtgttggtt tgcggctgta gcttggcgaa tgagatcagc
     1801 gccggcactt ctcttccggt ctgatgtttg agcagataat cgcggcgaac tccctggtaa
     1861 cgtgcttcac gtaagtcgcg gtcaaactgt tcgcgcatct ccggcgccag gtaactaccg
     1921 aattgagtgc cggtgacgtt cgttccgttc aggccgagca tgcccgcgaa atttttattg
     1981 ctgtagagga tgatcgagtc aggagaaacg ctcacggcgc cctgattcat ctcgtcgatc
     2041 atcaaccggt aaggataatc cgcggtcgtg agcgtataga ctacttcacc ctcggggcta
     2101 tcgactacca gcgcatccac ttcgccgttt cgaatcgcgc gcaacgtatc ttcggcttct
     2161 tcgagccgct ggcgcagttc gactatctct tgatcttcaa ctcggtttgc cgctttttcc
     2221 accatgctca tcacggatat ccaatccgat taatagtttt tgtgtgttcg ataaatcccc
     2281 aacaaaccgg cgaagcggcg ccggcagtcg tttaattaaa gtcggcgcag cgatgatctg
     2341 tgcatcgcgc gccgcatccg ggttcttata gatgtctatg acttgcaagt cataggcacc
     2401 gggcaaatac tcgtcgcaaa gccgcttcag gttcgaaatc gccctcagcg accgcggtgt
     2461 agagcccgtg acgtacaatc gcaaaatgta ttccgcacgc cgcccgggcc ttacttttag
     2521 ggcttcttca aagttttccg tggcgttacg cggtttattc ttcagtttgc cattgccggg
     2581 accgtttgat tttcgaatgc ccgtgtcagc catcaatact cctggcgcgg ctgaatatcg
     2641 agtccaacca gaacgcgttc agtgtttgaa agatccccga tgatcttccg gattggctgc
     2701 ggcagcttgc gcactagtgt cgggacagcc aggatttggt ctccgcgggc cagcgtcggg
     2761 ttctccatca aatcgataac ttcaatgtga tacttgccct tcaggtactc ttcgcaaatg
     2821 ttcttcaggt tctgaaaggc ggttatagat cgaggcgttt gtccggcgac gtaaagacgc
     2881 aggttccagc ggttgagact gccggagtca gcctgcttaa cgtggccgtt ttttgctgct
     2941 cgcgatcgtt ttgtgggggt tgaggtcatt tggtagcagc tcctttccgt tgttttcttg
     3001 ctccgttttc ttcaacgttt acgttgacgt cggcgtgacg caaccgggcc atttcaatgc
     3061 gttgcgtagc ctccgtgctt tcgcgctctt gatcttcttc gagctctttg acaagcgcct
     3121 cgcgttccgc ttcgaactgg tttcgcaacg caaccaactg cgcttcgtac aacgcctgcg
     3181 tgcgccgcaa ctgccgctgt ttacgttggc gttcggtctc gcgatcgcgc gtcgcgaaac
     3241 tttcgcgggc ggtttgggcg gcgcgtgccg aacccatcaa tacgccctcg gaaccaacgt
     3301 aagcatcgat cagttcaata ccgctatcgg tcagcagaaa ttcgcgcacc tggtttgaat
     3361 gcgcgatgcc gcgcgctttg agaatgtaaa gcccgcgatt gcgctcgccg ttcgactcta
     3421 tgttcttcac caggatccac gcatccatca gtgacgacac gccgacctct gagtcttcga
     3481 tttccagcgt gctgccagtc aaactcgtaa acatcgcggt gatttcacgt ttcttcagga
     3541 aatcgatcag tcgtgtgagc atcgccttcg tatcggcttc atcagccacc gccaggaagt
     3601 ttgtaatcgg at
//
LOCUS       DASWTX010000273         2404 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_112528, whole genome shotgun sequence.
ACCESSION   DASWTX010000273 DASWTX010000000
VERSION     DASWTX010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2404)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2404
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112528"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..687
                     /locus_tag="VGD38_04210"
     CDS             <1..687
                     /locus_tag="VGD38_04210"
                     /inference="COORDINATES: protein motif:HMM:NF012581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HEY0727249.1"
                     /translation="TWVSTLAVMAILTMTLGNVVAIVQNNVKRMLAYSSIAHAGYALV
                     GFVAAGAATDPAKRDAAVTAVMFYLLTYAVMNIGAFAVVQLIARSGDRRTSIEDYSGI
                     GFQSPVLAFSLSLFMLSLLGMPLTAGFIGKIMVFGAAIDQGYYVLVVIGVLNTAVSAY
                     YYLRLVIVMFFGERTTAWQAPRIPASVAVTLVLTVLGVLYLGVFPGRVINAFQTKIES
                     QLFTQTQTQK"
     gene            689..1168
                     /locus_tag="VGD38_04215"
     CDS             689..1168
                     /locus_tag="VGD38_04215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727250.1"
                     /translation="MTVEACAQQIRERLGETWLPRIYRERILKLRTRSYHFASDAIPK
                     RVLIQHTLLGVELKVGRKRLLCPDLATARYLSVFARLGAKDVAVPYDITKISQLADEL
                     ESTWYRMLLLVDQEAKAKSTSFRSRVRGSLVADIRAEIAAAGAGTRIPEFKLTTRNR"
     gene            1171..2088
                     /locus_tag="VGD38_04220"
     CDS             1171..2088
                     /locus_tag="VGD38_04220"
                     /inference="COORDINATES: protein motif:HMM:NF012345.4"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEY0727251.1"
                     /translation="MTQELLEVSPITQPAEVSASLPFPFNQQTFCRYEPVEQRIEKAR
                     VLVIDNLLRDERDVSAVARTEWGAALTPELKRERLIAGMAIENILNNISRLVKKPETH
                     VAHVSEVAEASAEFAPDAIVLSGTLRDFDYYVQTILDSFGGFIRETKIPVLAICGGHQ
                     LVGMSFGARVVTLDKLEQHEQRAGRPHEYQYRYVRITEPDDPIFTNISVCEEPKEAKG
                     SHILHVWQNHGLQLDRVPEGFQLLATSYLCRNQMMVKRSRGQLIYTVQFHLEKSFEDW
                     NKSRTRWEHPNESRDGRILFENFLILATS"
     gene            2094..>2404
                     /locus_tag="VGD38_04225"
     CDS             2094..>2404
                     /locus_tag="VGD38_04225"
                     /inference="COORDINATES: protein motif:HMM:NF012933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727252.1"
                     /translation="MSSELLRPLTQKTLALAARELAARDRLLANIHATYGDPPMWQRA
                     AGFRTLVHIILEQQVSLSSAKSMLLRLEAAIQPFTPERFMELGEMGLRQLGVTRQKSA
                     Y"
BASE COUNT          498 a          698 c          703 g          505 t
ORIGIN      
        1 acgtgggtca gcactctcgc agtgatggcc atcctcacga tgacgctcgg caacgtcgtc
       61 gccatcgtgc agaacaacgt caaacgaatg cttgcgtatt cgtcgatcgc acacgcgggt
      121 tatgcgctag tgggtttcgt agctgccggc gcggctaccg atccggcaaa acgcgacgcg
      181 gccgttacgg ccgtcatgtt ctacctgctc acttacgcgg tgatgaacat cggcgcgttc
      241 gcggtggtgc agttaatcgc gcgcagcggc gatcggcgca cttcgatcga agactacagt
      301 ggcatcggtt tccaatcgcc cgtactcgcc ttctcgctga gcctgttcat gctgagtttg
      361 ttgggcatgc cgctgactgc gggcttcatc ggcaagatca tggtgtttgg cgccgcgatc
      421 gatcagggct attacgtgtt ggtcgtcatc ggcgtgctca acacggccgt ttcggcttac
      481 tactacctgc gtctcgtcat cgtgatgttc tttggcgaac gaacgaccgc gtggcaagcg
      541 ccgcgcattc ccgcgagcgt ggcggtgact ttggtgctga cggttcttgg cgtgctttat
      601 ctcggtgttt tcccgggccg cgttatcaac gcgttccaga cgaagatcga gtctcagctc
      661 tttactcaaa cacaaacaca gaagtagcgt gactgtcgaa gcctgcgcgc aacagattcg
      721 cgaacgactc ggcgaaacct ggctgccccg aatctatcgc gagcgaatct tgaagctgcg
      781 cacgcggtcg taccactttg cgagcgacgc gattccaaaa cgtgttctca tccagcacac
      841 attgctgggt gtcgaactga aagtcggacg caaacggctt ttgtgcccgg atttggcgac
      901 ggcgcgatac ctttcggtgt ttgcgcggct gggcgcgaag gatgtcgcag tcccctacga
      961 catcaccaaa atctcgcaat tggcggacga attggagtca acgtggtata gaatgttgtt
     1021 gctcgttgac caggaagcca aggcaaagag caccagcttc aggagccgcg tgcgtggctc
     1081 gctagttgct gacattcgcg cggaaatcgc cgcggcgggc gcgggtacga gaatcccgga
     1141 gtttaaatta acgacacgta accgataaat atgacccagg aactgcttga agtatccccc
     1201 ataacacaac cggctgaggt ttcggcatcg ctgcccttcc ctttcaacca gcaaacgttc
     1261 tgtcgctacg aaccggtaga gcagcgcatt gaaaaggcgc gcgtgctggt gatcgacaac
     1321 ctgctgcgcg acgaacgcga tgtttctgca gtggcgcgca ccgagtgggg cgccgcgcta
     1381 acacccgaac tcaaacgcga acggttgatc gccggcatgg cgatcgaaaa cattctcaac
     1441 aacatctcgc gtctcgtgaa gaaacccgag acgcacgtgg cgcacgtttc ggaagtcgcg
     1501 gaggcctcgg cggagttcgc gccggacgcg atcgtgctca gcggcacgtt gcgcgacttt
     1561 gattactacg tgcaaacgat tctcgacagc ttcggcggct tcattcgcga aacgaaaatc
     1621 ccggtgctgg cgatctgcgg cggtcatcaa ctcgtcggga tgagcttcgg cgcgcgcgtc
     1681 gtcacgctcg acaaactcga acagcacgaa caacgcgccg gtcgcccgca cgagtaccag
     1741 tatcgttacg tgcgcatcac tgaacccgac gatccgatct tcaccaacat ctcggtttgc
     1801 gaagagccaa aagaagcgaa gggatcgcac atcctgcacg tttggcagaa ccacgggctg
     1861 caactcgatc gcgttccgga aggctttcag ttgctggcga cgtcgtatct ctgccgcaac
     1921 cagatgatgg tgaaacgcag tcgcggccaa ttgatctaca cggtccagtt tcatctcgaa
     1981 aagtcgtttg aagactggaa caagagccgc acgcgctggg agcatccgaa cgagtcgcgc
     2041 gacggccgca tcctgtttga gaacttcctg atcctcgcga cgagttaaac gtcttgtctt
     2101 cagaattact ccggccactg acgcagaaga cacttgcgtt ggcggcgcgc gagcttgccg
     2161 ctcgcgatcg gctgctcgca aacattcacg ccacgtacgg cgatccgccg atgtggcaac
     2221 gcgcggcagg ctttcgcacg ctggtccaca tcatcctcga acaacaggtc tcgcttagtt
     2281 ccgcgaagtc gatgttgttg cggctggaag cggcgattca gccgtttacg ccggaacgct
     2341 ttatggaatt gggcgagatg ggattgcggc agcttggcgt gacgcggcag aagtcggcgt
     2401 attt
//
LOCUS       DASWTX010000274         1597 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_197778, whole genome shotgun sequence.
ACCESSION   DASWTX010000274 DASWTX010000000
VERSION     DASWTX010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197778"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1499
                     /locus_tag="VGD38_04230"
     CDS             <1..1499
                     /locus_tag="VGD38_04230"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEY0727253.1"
                     /translation="IVDGAMVNGQLRRSANKVFINGEPRFEHQLKNTDRITIGASTLR
                     FEQPVEERTSEVRYDDKPLGHTQLLISANDVMSTVLRSKEEVAPSPQRDKVLEALQRK
                     ANILSALYEMSKTLGSVFDLNAIFEKATDIIFRSTPADRVVALLAEPGAADGEDANLA
                     PIAMRARDNKLEAHARKLSIGRTITRKVMHDRVALLSQDAASDEQFAGVDSIVSQGVR
                     STICAPLVAETRVHGALYADRLDPFAAFKPDDLELISAVAAQTAIAVENARAHERLAR
                     EEVARANYSRFLPEYVVKQMLENPDSFKLGGVSQVITILFADIRGFTRISEHAPPEKI
                     VNLLNRYFSAMTDIIFAHGGTLDKYLGDGLMALFGAPTATQDDASNALNAAVAMQRRM
                     LGINRELREEGFPEIGVGMGLHTGEVIVGYIGSDRRSEYTAIGDTVNTSSRLESNARG
                     GEILISDATAKAAHSRYKLQPREAIMVKNRQQPVMLWEVDWQKASGSW"
BASE COUNT          365 a          486 c          441 g          305 t
ORIGIN      
        1 ctattgtcga cggcgccatg gtcaacggcc aacttcgccg cagcgcgaac aaagtcttta
       61 tcaacggtga accgcgcttc gaacaccaac tcaaaaacac agatcggatc accatcggcg
      121 ccagcacgtt gcgctttgaa caacccgtcg aagaacgcac ctcggaagtt cgctacgacg
      181 acaaaccact cggtcacaca caactgctga tctccgccaa cgatgtgatg tcgacggtgc
      241 ttcgttcgaa agaagaagtc gccccttccc cgcagcgcga caaagttctc gaagcgttgc
      301 aacgcaaggc aaacatcctg agcgcactct atgaaatgag taagacgctc ggctcggtct
      361 tcgatctgaa cgcgattttc gagaaagcca ccgacatcat ctttcgttcg actccagctg
      421 atcgcgtcgt cgcgctactc gccgaaccag gcgccgccga tggcgaagac gccaacctgg
      481 ccccgatcgc gatgcgcgcg cgcgacaaca aactcgaagc ccacgcgcgt aagctttcga
      541 tcggccgcac catcacgcgc aaagtgatgc acgatcgcgt cgcgctgctt tcgcaggacg
      601 cggcgtcaga cgaacagttt gccggagtcg attcgatcgt ttcgcaaggc gtgcgttcga
      661 cgatctgtgc gccgctcgtc gcggagacac gtgttcacgg cgcgctctac gccgatcgtc
      721 tcgatccgtt cgccgcattc aagcctgacg atctcgaact gatcagcgcc gtcgcggccc
      781 agactgcaat cgcggttgaa aacgcacgcg cgcacgaacg gctcgcacgc gaagaagtcg
      841 cacgggcaaa ctacagccgg ttcctgcccg aatacgtcgt caaacaaatg ctcgagaatc
      901 ctgactcgtt caaactgggc ggcgtcagtc aggtcatcac gattcttttt gccgacattc
      961 gcggcttcac gcgcatctcc gaacacgcgc cgccggaaaa gatcgtaaac cttctgaacc
     1021 gttacttttc ggcgatgacc gacatcatct tcgcgcacgg cggcacgctc gataagtatc
     1081 tcggcgatgg tctaatggcc ctatttgggg cgccaacagc tacgcaggat gacgcatcca
     1141 atgccttgaa cgcggccgtg gccatgcagc gccgcatgct gggtatcaac cgggagttgc
     1201 gcgaagaggg ctttccggag atcggggtcg gcatgggcct ccacaccggc gaggtaatcg
     1261 tcggttacat cggctcggac cgccgctcgg aatacacggc gattggtgat accgtcaaca
     1321 cgtcgtcgcg gctcgaatca aacgcgcgcg gcggagaaat tctgattagt gatgctacgg
     1381 cgaaagccgc gcatagccgt tacaagttac agccacgtga agcgatcatg gtcaaaaaca
     1441 ggcaacagcc tgtgatgctg tgggaggttg actggcaaaa ggcaagcggg tcgtggtgaa
     1501 gctttgaata ggtccctaaa gcctcactga accaacagga cctatgggtt ttgttttatg
     1561 tcgttcatag gtaagaccgg gcacttcctc ggacttg
//
LOCUS       DASWTX010000275         2161 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_133001, whole genome shotgun sequence.
ACCESSION   DASWTX010000275 DASWTX010000000
VERSION     DASWTX010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2161
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133001"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..341)
                     /locus_tag="VGD38_04235"
     CDS             complement(<1..341)
                     /locus_tag="VGD38_04235"
                     /inference="COORDINATES: protein motif:HMM:TIGR00640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin B12-binding domain-containing protein"
                     /protein_id="HEY0727254.1"
                     /translation="MSTRKIRVLVAKPGLDGHDRGAKVIARALRDAGMEVIYTGLRQT
                     PEMIAAAALQEDVDAVGVSILSGAHNTLCPRIVHLLREKGMDDCLVLVGGIVPQEDVP
                     KLKEQGIAEIFL"
     gene            complement(345..2027)
                     /locus_tag="VGD38_04240"
     CDS             complement(345..2027)
                     /locus_tag="VGD38_04240"
                     /inference="COORDINATES: protein motif:HMM:TIGR00641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HEY0727255.1"
                     /translation="MPETKESSSPVELEKERWEEETLEPALSKHPERKKSFQTVSLKE
                     VDRLYTPADIEELDFSRDVSFPGEFPYTRGIHPTGYRGKLWTMRQFAGFSTPEETNAR
                     FKYLMEQGQTGLSVAYDLPTLMGYDADSPLSEGEVGKCGVAVSSLADMEVLFDGIPLE
                     KVTVSQTINAPASVLLAMYLVVAEKQGADWNKISGTLQNDILKEYIAQKEWIYPIKPA
                     MKLVVDTFEFCTDRVPRYNPISVSGYHIREAGATAAQELAFTLRDGIEYVAWGVEAGL
                     DVDRFVPRISFFFNAHNDFFEEIAKYRAARRIWAREMKRRFGSDHPRTLQMRFHTQTA
                     GVSLTVQQPLNNIVRVAIQALAGVLGGTQSLHTDAYDEALALPTDRAALIALRTQQII
                     AEETGVVNTVDPLGGSYYLEALTDKMEQEALDYFRKIDAMGGMVAAIERGFPQREIQD
                     SAYQYQKAVERNEQVIVGVNKYAMTDEPAEVPILVIDESVRDHQLERLEQTRARRDAG
                     AVANTLEKLKLAASRNENTMPATIDAVRAYATLGEICSALRDVYGVYEEPAF"
BASE COUNT          394 a          617 c          651 g          499 t
ORIGIN      
        1 agaaagatct cggcgatgcc ttgttccttg agcttgggaa cgtcttcctg gggaacaatg
       61 ccgcctacca ggacgaggca gtcgtccatg cctttttcgc ggagcaggtg aacgatgcgc
      121 gggcagagcg tgttatgcgc gccgctcagg atcgaaacgc cgacggcgtc aacgtcttcc
      181 tgtagcgcgg cggcggcgat catctcgggc gtttgccgca ggcccgtgta gatcacttcc
      241 atgcctgcgt cgcgcaacgc gcgcgcgatc actttcgcgc cgcgatcgtg gccgtcgagg
      301 ccaggctttg ctaccagcac acgaatcttt cgagtggaca tattttagaa ggcgggctct
      361 tcgtaaacgc cgtagacgtc acgcagtgcg gaacagattt ctcccaacgt cgcataagcg
      421 cgcaccgcgt cgatcgtcgc cggcatcgtg ttttcgtttc ggctggcggc gagcttgagt
      481 ttttcgagcg tgtttgcgac ggcgcctgca tcgcggcgtg cgcgtgtttg ttcgagccgc
      541 tcgagctggt ggtcgcgcac ggattcgtcg atcacgagga tcgggacttc cgccggctcg
      601 tcagtcatcg cgtacttatt gacgccgacg atcacctgct cgttgcgttc gacggctttt
      661 tgatattggt aagccgagtc ctgaatctcg cgttgcggaa atcctctttc gattgccgcg
      721 accatgccgc ccatcgcgtc gatcttgcgg aagtagtcga gcgcttcctg ttccatcttg
      781 tctgtcagcg cttcgaggta ataggagccg ccgagcggat cgactgtgtt cacgacgccg
      841 gtctcttcgg cgatgatctg ttgtgtgcgc agggcgatca gagccgcgcg atcggttggc
      901 agtgcgagtg cttcgtcgta cgcgtccgtg tgcaaactct gcgtgccgcc gagcacaccg
      961 gcgagcgcct gaattgcaac acggacgatg ttgttcagcg gttgctggac cgtgagcgag
     1021 acgccagcgg tctgcgtgtg aaaacgcatc tgcaacgtgc gcggatgatc gcttccgaag
     1081 cggcgtttca tttcacgcgc ccaaatgcgc cgcgctgcgc gatacttggc gatctcttcg
     1141 aagaagtcgt tgtgcgcgtt gaagaagaac gagatacgcg gcacgaaacg atcgacgtcc
     1201 aagccggctt cgacgcccca ggcgacgtat tcgataccgt cgcgcaatgt gaaggcgagc
     1261 tcctgcgccg ctgtcgcgcc cgcttcgcga atgtgataac cgctcaccga gatcgggttg
     1321 taacgcggca cgcgatccgt acagaactca aacgtgtcga ccaccagctt catcgccggt
     1381 ttgatcggat agatccactc tttctgcgcg atgtactcct tgaggatgtc gttctgcagt
     1441 gtgccggaga tcttgttcca gtccgcgccc tgtttctcgg cgacgaccag gtacatcgcg
     1501 agcagcaccg acgcgggcgc gttgatggtt tgggagacgg tgactttttc gagcgggatg
     1561 ccgtcgaaga gcacttccat gtcggcgagt gacgagaccg ccacgccgca tttgccgact
     1621 tcgccttctg ataaaggaga gtcagcgtcg taacccatca acgtcggaag atcgtaagcg
     1681 actgagagtc cggtctgacc ttgttccatc aggtacttga accgggcgtt ggtctcttcg
     1741 ggcgtgctga agccggcgaa ctggcgcatc gtccagagtt tgccgcgata gccggtcgga
     1801 tgaatgccgc gcgtgtaagg aaactcgccg gggaaagaga catcgcggct gaaatcgagc
     1861 tcctcgatgt cggccggcgt gtaaagccga tcgacctcct tcagcgagac agtctgaaaa
     1921 ctcttcttac gttcgggatg cttgctcagc gcaggctcga gcgtctcttc ttcccaacgc
     1981 tccttctcca gttcgactgg tgaggagctt tccttagttt ccggcattca acctctcaga
     2041 tcgacagaat ttccttgcga aatcgcagtg tagtttacgg tatttagggt gtcaaactgt
     2101 aggttgggta tgaataatcc accgactgtg tcggtggtat ttcatacttc acctatatcg
     2161 a
//
LOCUS       DASWTX010000276         1706 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_219779, whole genome shotgun sequence.
ACCESSION   DASWTX010000276 DASWTX010000000
VERSION     DASWTX010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1706)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1706)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1706
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219779"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..785)
                     /locus_tag="VGD38_04245"
     CDS             complement(<1..785)
                     /locus_tag="VGD38_04245"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M56 family metallopeptidase"
                     /protein_id="HEY0727256.1"
                     /translation="MYTFLCITLVLALLLTINATATMASAGAGRLSKRWLRKCSARTR
                     AEILFVMRIGPPVIAIVAIVAFMIPSYLTYEPHQTEEVVSWKLGGLAALSAIGVALAF
                     ARGVRSWLATRSLVKEWLASSTPIQLDAIKIRTFVFEHRFPIIAVVGAIRPRLFIAAQ
                     VLESLTEEELAAAIDHEYGHLAAHDNFKRSVMRISRAALLLIPCGRSLDRAWSDASES
                     AADEYAAQRSSLVALNLASALVRIAKMIPKGQQQIMPASVSAFL"
     gene            complement(792..1232)
                     /locus_tag="VGD38_04250"
     CDS             complement(792..1232)
                     /locus_tag="VGD38_04250"
                     /inference="COORDINATES: protein motif:HMM:NF015898.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BlaI/MecI/CopY family transcriptional regulator"
                     /protein_id="HEY0727257.1"
                     /translation="MKTSRFLLRGFRRPREIACFALGKLERQVLEETWRLGEVSVRDI
                     HRAFEERIAYTTLMTTLDRLYKKNLLERRKDGRAFLYSAIVSQNEFERGIKEDVVDGL
                     LGHGADEVEPVLACIVDTITERDRELLDELDRLVQEKKRELDRS"
     gene            1351..>1706
                     /locus_tag="VGD38_04255"
     CDS             1351..>1706
                     /locus_tag="VGD38_04255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727258.1"
                     /translation="MTVVTGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLERMD
                     KPDVDEVNGIAPAIAIRQKNSTRNPRSTVGTQTEIYDYLRLLFARVGQTFCRVCGRLV
                     TRDSPDSIADEVLTELS"
BASE COUNT          359 a          509 c          498 g          340 t
ORIGIN      
        1 agaaaagcgg aaaccgacgc cggcatgatc tgctgctggc ctttgggaat catcttcgcg
       61 atccgaacca gcgccgacgc gagattgagc gcgaccagcg aactgcgttg cgccgcgtat
      121 tcatccgcag ctgactccga cgcatcactc cacgcgcgat cgagcgatcg cccgcacgga
      181 atgagcaaca gcgccgcacg actgatccgc attacggatc ttttgaagtt gtcgtgcgcg
      241 gcaagatgtc cgtactcgtg atcgatcgca gcggccagct cctcttcggt caacgactcc
      301 agcacttgag cggcgataaa gagtcgcggc cggatagcgc cgacgacggc gatgatcgga
      361 aatcggtgtt cgaagacaaa cgtccggatt ttgatcgcgt cgagttgaat cggcgtcgac
      421 gatgcgagcc attctttcac aagcgaacgc gtcgccagcc aagaacgaac gccacgcgca
      481 aacgcgagcg ccacgccgat cgcggagagc gcggcgagac cgccgagctt ccagctaacg
      541 acttcctcgg tttggtgtgg ttcgtaagtc agatacgacg ggatcatgaa cgcgacgatc
      601 gcgacaatgg cgatcaccgg tggtccaatc cgcatcacga aaagaatctc tgctctcgta
      661 cgcgccgaac actttcgtag ccaacgcttg ctgagacggc cggcgccggc ggacgccatc
      721 gtcgccgtcg cgttgatcgt cagcagcaga gcgagtacga gtgtgatgca gaggaatgtg
      781 tacatcgcta attacgatcg atcgagttcg cgtttcttct cttgcacgag acgatcaagt
      841 tcgtcgagca gttcgcgatc tcgttcggtg atcgtgtcga cgatacaggc cagcaccggt
      901 tcgacttcat cggcgccgtg accgagcaga ccgtcaacca cgtcttcttt gatcccgcgc
      961 tcaaactcgt tctgcgacac gatggccgaa tacaaaaacg cgcggccgtc tttgcgccgt
     1021 tcgagcaggt tctttttgta gagccggtcg agcgtcgtca tcaatgtggt gtaagcaatc
     1081 cgctcttcaa atgcgcggtg gatatcgcgc acgctcactt cgccgagccg ccacgtctct
     1141 tcgagcacct ggcgttcgag tttgccgagg gcgaaacagg caatttcgcg cggacgcctg
     1201 aatccgcgca gcagaaagcg agaggttttc atatcgcgcg cattttcggc tattattcgt
     1261 cgtttgtcca tgtcgcaaga atcgatacaa gtaaggggag cgcgagttaa caacctcaaa
     1321 aacgtctcct tttccatccc catcaaccag atgaccgtcg tgaccggcgt gagtggctcg
     1381 ggcaagtctt cgctggcgtt cgacacgatc tacgccgagg gccagcgccg ctatgtggag
     1441 tcgctgtcgg cgtacgcgcg gcagtttctc gaacggatgg acaagccgga cgtcgacgag
     1501 gtcaacggca tcgcgcccgc gatcgcgatc cggcagaaga actcgacgcg gaacccgcgt
     1561 tcgacggtcg gaacgcaaac cgagatctac gactacctgc gtcttctctt tgcgcgtgtc
     1621 gggcaaacgt tttgcagagt ttgtggacgg ctcgtcacgc gcgactcgcc cgactcgatc
     1681 gcagacgagg ttcttacgga gctgtc
//
LOCUS       DASWTX010000277         1824 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_308052, whole genome shotgun sequence.
ACCESSION   DASWTX010000277 DASWTX010000000
VERSION     DASWTX010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1824)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1824)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1824
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308052"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1814)
                     /locus_tag="VGD38_04260"
     CDS             complement(<1..1814)
                     /locus_tag="VGD38_04260"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY0727259.1"
                     /translation="MFLSYTREKGFASEVRFIDGDTFVAFDGVSNKTDAEILGYVREF
                     MNERLQSSEFHPDAWPPFLVRNPHDTTQKLNAVAGDKYTYRQMDDFTDLIEKTLKTVP
                     QVSKVARSGNLDETVYLVYSQERLASYGVRPSNLENVLKGRNITTPGGQLNVEGKNVN
                     LDPSGEFKSERELGDVIVPAANGSTVYLRDLAHIVRAYENPARYLNYFNSRDANGNWR
                     RSRAVTLSVQMRSGEQIGEFGKQIDTALANLKQQLPEDLVFARTSDQPLQVEESIDLF
                     MKSLYEAIILVVIIALIGFWEWRSALLMALSIPITLAMTFGMMYTLGIDLQQVSIATL
                     IIALGLLVDDPVVAGDAIKRDLAIGHKRSVAAWLGPTKLATAILYATITNIVAYLPFL
                     IIKGSTGEFLYTLPVVLACSLVASRLVSMTFIPLLGYYLLRPKAEKSIEERRKKGFAA
                     QYYRLGTWAINHRWKVMAGAMSFLLLGGVIMSQLKTQFFPKDLSYLSYVDVWLPEDAP
                     LSATNEAATHSEEIIREVVAEYGKHHPDDDGNPRDVLQSLTTFVGGGGPRFWFSVSPE
                     LQQLNYAQIIIQVKDKHDTSHLIHPLQEALSSRIPGAR"
BASE COUNT          382 a          507 c          553 g          382 t
ORIGIN      
        1 atgcgcgcgc cgggaatccg tgaagacaac gcttcctgca acggatgaat caggtgcgac
       61 gtgtcgtgct tgtctttcac ctgaatgatg atctgtgcgt agttcaactg ttgcagctcg
      121 ggcgaaacag aaaaccagaa ccgtggtcca ccgccgccca caaaggtcgt gagcgactgc
      181 aacacgtcac gcgggttgcc gtcgtcatcc gggtgatgtt tgccatactc ggcgaccact
      241 tcgcggatga tctcttcgga atgcgtggct gcttcgttcg tcgcggaaag cggcgcgtct
      301 tcaggcagcc acacgtcgac gtacgagaga tacgacaggt ctttcgggaa gaactgcgtc
      361 ttgagttggc tcataatcac gccgccgagc agcaggaacg acatcgcgcc cgccatgact
      421 ttccagcggt gattgatggc ccatgtgccg agacggtagt actgcgcggc gaagcctttc
      481 ttgcgccgtt cctcgatcga cttctcggct ttcggccgca gcaggtagta accgagcagc
      541 ggaatgaacg tcatcgacac gagtcgcgaa gcaacgagcg aacacgccag cacgacgggc
      601 agcgtgtaga gaaactcgcc ggtcgagccc ttgatgatca ggaagggaag ataagcaacg
      661 atgtttgtga tcgtggcgta gagaatcgcg gtcgcgagct tggttggtcc aagccacgcg
      721 gctacggatc gtttgtgacc gatcgcgaga tcgcgtttta tcgcgtcgcc ggcgacgacg
      781 gggtcgtcaa ccaaaagacc gagcgcgatg atgagcgtcg cgatcgacac ctgctgaaga
      841 tcgatgccga gcgtgtacat catgccgaac gtcatcgcga gcgtgatcgg tatcgacaag
      901 gccatcaaca gcgccgagcg ccattcccag aaaccgatca gcgcgataat cacgacgagg
      961 atgattgctt cgtaaagact cttcataaag aggtcgatgc tttcctcgac ctgcaacggc
     1021 tggtctgacg tgcgcgcgaa caccaggtct tcgggcaatt gttgtttcag gtttgcgagc
     1081 gcggtatcga tctgtttgcc gaactcgccg atctgttcgc cggagcgcat ctgcacggaa
     1141 agcgtgaccg cgcggctgcg gcgccaattg ccgttagcgt cgcgcgagtt gaagtagttc
     1201 aggtagcgcg cagggttttc gtaagcgcga acgatgtgcg cgaggtcgcg caggtagacc
     1261 gtcgatccat tcgcggccgg cacgatcacg tcgccgagtt cgcgctcgct cttgaactca
     1321 ccagacggat cgagatttac gttcttgcct tcgacgttga gctgtccgcc gggcgtggtg
     1381 atgttgcggc ctttcaaaac gttttcgaga ttgctcggac ggacgccgta cgaagcaagc
     1441 cgttcctgcg aatagacgag gtaaacggtt tcgtcgagat tgccggaacg cgcgaccttc
     1501 gatacctgcg gaacggtctt caacgtcttc tcgatcagat cggtgaagtc gtccatttgg
     1561 cggtacgtgt atttgtcacc ggcaactgcg ttcaacttct gcgtcgtgtc gtgtgggttg
     1621 cgcacgagaa acggcggcca cgcgtcggga tgaaactcgg aagactgcaa ccgctcgttc
     1681 atgaactcgc gcacgtaacc gagaatctcg gcgtcggttt tgtttgagac gccgtcaaag
     1741 gccacgaacg tgtcgccgtc gatgaaacgc acttcactcg cgaaaccctt ctccctggta
     1801 taggagagaa acatctcgat cggc
//
LOCUS       DASWTX010000278         4776 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_2818, whole genome shotgun sequence.
ACCESSION   DASWTX010000278 DASWTX010000000
VERSION     DASWTX010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4776
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2818"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1079)
                     /locus_tag="VGD38_04265"
     CDS             complement(<1..1079)
                     /locus_tag="VGD38_04265"
                     /inference="COORDINATES: protein motif:HMM:NF021492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0727260.1"
                     /translation="MLLARLVLLTACWVSIAVAQSPPANQDYLLGRKAEASGDVATAT
                     ANYQAVVSRNALLTEYALWRLARIARSTGDLVLERERLQRLIATAPNSLLYETAALRL
                     AESFFESGDFAAAAGSAKPVTSSKNVVVAREAAALMGTALVRAGRTAEARDVFTKLVM
                     QMPDASRPDDFALLAVRELDALDKSAGTANLNEADILLRASVYQFNRDFAGARVHYQT
                     LIDRFPQSGTVPNATFQLARGLYNEAKYDDAIKILQKLLQTSVDSSPQTARDAVALLA
                     SSYVRLKRTDEAIAAYKVIIDKFPDNPTPERAYLNIIDALHEAGRHADALNWVQQTRA
                     RFKSDLGGTLALFAQLRIHLAQGSWA"
     gene            1125..2060
                     /locus_tag="VGD38_04270"
     CDS             1125..2060
                     /locus_tag="VGD38_04270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 5,10-methylenetetrahydrofolate
                     dehydrogenase/5,10-methenyltetrahydrofolate
                     cyclohydrolase"
                     /protein_id="HEY0727261.1"
                     /translation="MITEKSKASVLDGAVVAARIKQEVTAEVEQMVQTTGYRPCLAAV
                     RVGDDPASAVYVRNKIKASEEIGIRSEHHALPESIGTAELLGLIETLNARDDVDGILT
                     QLPWPRGIDETQLIEAIDPRKDVDGFHPVNAGKLAMGRAALVPCTPAGIIELLDYNAI
                     EIPGANACVVGRSQIVGRPMAQLLLQRDATVTICHSRTRDLAAVTRQADLLVVAIGRA
                     GMIGREHIKPGAVVIDVGMNKVSDPEEVRALFGDTAEKRLEIVEKRGSTLVGDVNPAE
                     ASEVAGMLTPVPGGVGLLTVAMLMKNTLKAAKLRR"
     gene            2066..2677
                     /gene="coaE"
                     /locus_tag="VGD38_04275"
     CDS             2066..2677
                     /gene="coaE"
                     /locus_tag="VGD38_04275"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: protein motif:HMM:TIGR00152.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEY0727262.1"
                     /translation="MLRVGLTGSIAVGKSYVTSIFAELGCHVLDADQTAREVVLPGSP
                     GLEAVAESFGREVLNPDGTLNRQRLGELVFGDEEKRQRLNQILHPFIIARQDDIMREW
                     EREDPDGIGVIDAALMIESGGYKRFDKLIVVHCRPEVQLERLMSRNGLSREDAEARIN
                     SQMPQAEKQKFADFLIDTSDGFESTRSRTVEVHNQLLKLSRRQ"
     gene            2674..4383
                     /locus_tag="VGD38_04280"
     CDS             2674..4383
                     /locus_tag="VGD38_04280"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HEY0727263.1"
                     /translation="MTTKPVTNSPTRRRKRLRWAQVYALFLVFCLVHTGCFKEEPSTY
                     YGEIVTPRAQELRWSDGGLPQTFDPAFAAAPPDTDAVRALFEGLTDYDPHTLAPIPAV
                     ATRWESSHDGRVWTFYLRDNARWSNGEKVTAGDFVRSWQRTLKIGPLAPHTELLANIE
                     GATATAPQPEPESPAQPQSREPATPAEAMPEFGAEALNDHVLRVTLQHADNGFPALVA
                     HPVFRPVKLPDADHTKRIESHELISNGAFQLSATEADRVRLERARNYWDGDSVSLDRV
                     TFVHTAGPEQALSAYRDGEIDAVTNAPFEPLALKLLAPYKDFRRSTYGALTYYVFNVD
                     REPFDDVRVREALALAIDRERVSRDDLGGATEPAGRFLPDAMSGEKPVVEKTELLDHD
                     INKSRELLAEAGYPDGDGFPVIRLLINRNEQQRVVAQSIAAMWRTALNIETEIVIKGW
                     DEYEAAIRSGDYDVVRRGLVMQTTSETTNIAMLFGRDSHPLPVQPMEGPASAASPEPQ
                     RPALTIETEAQALKELKAMPIYFASSYSLVKPYVSGFDLNVLDVPLLKRTRLDTNWKE
                     QAR"
     gene            4380..>4776
                     /locus_tag="VGD38_04285"
     CDS             4380..>4776
                     /locus_tag="VGD38_04285"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: protein motif:HMM:NF013468.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HEY0727264.1"
                     /translation="MTPSEVISNGGVIAFRTDTFYGLGVNPFNAAAVARLKELKGRED
                     DKPILLLISDAEQVKRLIATSSDRFKIAAREFWPGPLTIIGQAVPQLPQEITAGTGTV
                     GVRLPADESVREFVRKCGRVLTATSANPAG"
BASE COUNT         1003 a         1444 c         1433 g          896 t
ORIGIN      
        1 gcccaactgc cctgcgcgag atgaattctc aactgcgcaa ataacgcgag cgtaccgcca
       61 agatcgctct tgaagcgcgc gcgcgtctgc tgcacccagt tcaacgcgtc cgcgtgacgt
      121 ccggcttcgt gcagcgcatc gatgatgttc aggtaagcac gctcgggggt tggattgtcg
      181 gggaacttgt cgataatgac tttgtaagcc gctatcgctt cgtcggtgcg tttgagccga
      241 acataactcg acgccagcaa agcaactgca tcgcgcgcgg tttgagggct ggagtcaacg
      301 gaggtctgca ggagtttctg aaggatcttg atcgcgtcgt cgtacttcgc ttcgttgtac
      361 aaaccacgcg cgagttgaaa cgtggcattc gggaccgtgc cgctttgcgg aaaacgatcg
      421 atgagcgtct ggtaatgcac gcgcgcgccc gcgaagtcgc gattgaactg gtagacggaa
      481 gcacgcagca gaatatccgc ttcgttgaga ttcgccgtgc ctgccgactt gtcgagcgca
      541 tcgagctcgc gcaccgcaag caacgcaaaa tcgtccggcc gcgacgcgtc cggcatctgc
      601 atcaccagct tcgtaaacac gtcgcgcgcc tcagccgttc tcccggcgcg aacaagcgct
      661 gttcccatca acgccgcggc ttcacgcgcc acgacgacgt ttttcgaaga cgtgaccggc
      721 ttcgcactgc ccgcagcggc cgcgaagtcg ccgctttcaa agaaactctc cgcgagccgc
      781 aacgctgccg tttcgtaaag cagactgttc ggcgcggtgg cgatgagacg ttgcaggcgt
      841 tcgcgttcga gcacgagatc gcccgtcgag cgcgcgattc gcgccagccg ccacaacgcg
      901 tattccgtca acagcgcatt gcgagaaaca accgcctggt agttggccgt cgcggttgca
      961 acgtcgccgg acgcttcggc cttacgtccg agcagataat cctgattcgc cggcggcgac
     1021 tgggccacgg cgatcgaaac ccagcaggct gttagaagta cgagtctcgc aagcaacatg
     1081 cgcggaatta taatctgtgt aatctgtgta tactattgag gccaatgatt accgaaaaat
     1141 ccaaagcgag cgtgctcgac ggcgcggttg tggccgcgcg catcaagcag gaagtaaccg
     1201 cggaagtcga acagatggtc cagacgacgg gctaccggcc gtgtctggcg gcggtgcgcg
     1261 tcggcgacga tccggcgtcg gctgtttacg tgcgcaacaa gatcaaggcg tctgaggaga
     1321 ttgggattag atcggagcac cacgcgctgc cggagtcgat cggaaccgct gaactgctcg
     1381 gcttgattga gacgttgaac gcgcgtgacg acgtcgacgg catactgacg caactccctt
     1441 ggccgcgcgg catcgacgag acacagctca tcgaagcgat cgatccgcga aaggacgtcg
     1501 acggatttca cccggtcaac gccggtaagc ttgcgatggg acgcgccgcg ctggtgccct
     1561 gcacgcccgc cggtatcatc gagctgctcg attacaacgc gattgaaatt cctggcgcaa
     1621 acgcgtgcgt cgtcggtcgc agtcaaatcg tcggccgacc gatggcccaa ctgctactcc
     1681 agcgcgacgc aaccgtcacg atctgtcact cacgcacgcg agatctcgca gccgtgacgc
     1741 gccaggccga tcttctcgtc gtggcaatcg gacgcgccgg aatgatcggt cgcgaacaca
     1801 tcaaacccgg agcggtggtt atcgacgtcg gcatgaacaa ggtttccgat cccgaagaag
     1861 tgcgggcgct gttcggcgac acagcagaaa agcgattgga gatcgttgag aagcgaggct
     1921 ccacactcgt cggcgacgta aaccccgctg aagcttcaga agtcgcggga atgttaacac
     1981 ccgttcccgg cggcgtcggc ctgctgaccg tcgcaatgtt gatgaagaac actttgaaag
     2041 ccgcaaaatt acgccggtaa ttccgatgct gcgtgttggc ttaacaggat caattgccgt
     2101 cggtaaatcc tatgtcactt cgatctttgc agaactgggc tgtcacgtac tcgatgcgga
     2161 tcaaacagcg cgcgaagttg ttcttcccgg ctctccgggt ctcgaagccg tcgccgaatc
     2221 gtttggccgc gaagttctca acccggacgg caccttgaat cgccagcgcc tcggcgaact
     2281 tgttttcggc gacgaagaga agcgccagcg gttgaaccag attcttcatc cgttcatcat
     2341 cgcgcgccag gacgacatca tgcgcgagtg ggaacgcgaa gacccggatg ggattggggt
     2401 tattgacgcg gcgctgatga tcgagtcggg tggttacaag cggttcgaca agttgatcgt
     2461 ggtccattgc cggcccgaag ttcagctcga acgcctgatg tcgcgcaacg gcctctcgcg
     2521 cgaggacgcc gaagcgagga tcaattcgca gatgccgcaa gccgagaaac aaaagtttgc
     2581 ggattttctg atcgatactt cagacgggtt tgaatcaaca cgtagtcgaa cggttgaggt
     2641 acataatcaa ttgctgaagc tcagtcggag acaatgacga cgaaaccggt gacaaattcc
     2701 cccactcgac ggcgaaagcg cttgcgctgg gcgcaggtct acgcgctgtt tttggttttc
     2761 tgtctggttc acacgggctg tttcaaagag gagccctcga cgtactacgg cgagatcgtc
     2821 actccgcgtg cgcaggaact tcgctggagc gacggcggac tgccgcagac tttcgatccg
     2881 gcgttcgcgg cggcgccgcc ggacacggat gcggtgagag cgctgttcga ggggttaacc
     2941 gattacgacc cgcacacact cgcgcccatt ccggcagtcg cgacgcgttg ggaatcgtcg
     3001 catgacggcc gtgtgtggac gttctacctg cgcgacaacg cgcgctggtc caacggcgaa
     3061 aaagttaccg ccggagattt cgttcgctcg tggcaacgga cgctgaagat tggtccactc
     3121 gcgccgcaca cggaactgct cgccaacatc gaaggcgcaa ccgcgaccgc gcctcagccc
     3181 gaaccggagt cgccggcgca gccacaatcg cgtgagcctg caacgcccgc ggaggcgatg
     3241 ccggagttcg gcgccgaggc attgaacgat cacgtgcttc gcgtcacgct gcaacacgcc
     3301 gacaacggct ttcccgcgct cgtggcccat ccggtgtttc gtcccgtcaa actccccgac
     3361 gcggatcaca cgaaacggat cgagtcgcac gagctgatct ccaacggcgc gtttcaactc
     3421 tcagccaccg aagctgatcg cgtccggctc gaacgcgcgc gcaattactg ggacggcgat
     3481 tcagtctcac tcgatcgcgt gacgtttgtt cacactgccg gtccggaaca ggcgctctcc
     3541 gcttaccgcg acggcgagat cgacgcggtc acgaacgcgc ccttcgaacc actcgctctc
     3601 aaacttctcg cgccttacaa agacttccgc cgctcaacgt acggcgcttt gacttactac
     3661 gtcttcaacg tcgatcgcga accgttcgac gacgtgcgcg tgcgcgaagc actcgcgctg
     3721 gcgatcgatc gcgaacgcgt cagccgtgac gatctcggcg gcgccaccga gcctgccgga
     3781 aggtttctcc ctgacgcgat gtcgggcgag aagccggtgg ttgaaaagac ggaactgttg
     3841 gaccacgaca tcaacaaatc gcgcgagctg ctcgcggaag cgggttaccc ggacggcgac
     3901 ggtttccccg tgatccggct gctgatcaat cgcaacgaac aacagcgcgt cgtggcccag
     3961 tcgatcgcgg cgatgtggcg cacggccctg aacatcgaaa ccgagatcgt gatcaaaggc
     4021 tgggacgaat acgaagccgc gatcagatcg ggcgattacg acgttgtgcg ccgtggtcta
     4081 gtgatgcaga cgacgagcga aacgacaaac atcgcgatgt tgtttggccg cgattcgcat
     4141 ccgctgccgg tgcaaccgat ggaaggtccc gccagcgcag cgtcacctga gccgcagcgt
     4201 cccgcgctga cgatcgaaac ggaagcgcag gcgttgaaag agctcaaagc gatgccgatt
     4261 tatttcgcat cctcatattc gttagtcaag ccgtacgttt cgggtttcga tctcaacgtg
     4321 ctggacgtgc ctttgttgaa acgcacgcgt ttggacacca actggaaaga gcaagcgcga
     4381 tgacaccctc ggaagtgatc tccaacggcg gtgtgatcgc gtttcgcacc gacacgttct
     4441 atggtctcgg cgtcaatcct ttcaacgccg ccgcagttgc gcgtctcaaa gagctcaaag
     4501 gccgcgaaga cgacaaaccg atactgctcc tgatctccga cgcggaacag gtcaagcgac
     4561 taatcgccac gagttcagat cgatttaaga tcgctgcgcg agaattctgg cctgggccgc
     4621 tgacgatcat cggtcaggca gttccgcagt tgccgcaaga gatcaccgcc ggcaccggaa
     4681 cagtcggcgt cagattgccg gccgatgaaa gcgttcgtga gtttgtccgc aagtgcggcc
     4741 gcgtattaac ggccacgagc gcgaaccctg cgggcc
//
LOCUS       DASWTX010000279         1572 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_351498, whole genome shotgun sequence.
ACCESSION   DASWTX010000279 DASWTX010000000
VERSION     DASWTX010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351498"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..996)
                     /gene="gcvPA"
                     /locus_tag="VGD38_04290"
     CDS             complement(<1..996)
                     /gene="gcvPA"
                     /locus_tag="VGD38_04290"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF001696.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006546 - glycine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPA"
                     /protein_id="HEY0727265.1"
                     /translation="MRYIPNSPEERTEMLEAIGLKSAEQLFDSIPQELRLQRPLNTPA
                     ALSEIELLDKFERLGRRNAAAQRTSFLGAGAYSHYIPTIVDHIISRSEFFTAYTPYQP
                     EISQGTLQTIFEFQTLVCQLTGMEVANASMYDGSTALAEAVLMAERVTRRSKVIASAA
                     VHPQYLEVVKTYVQHAGIDLEIAEFDEKTGQAGAALANAVDDKTAALVVQSPNFFGCI
                     EDLKALADAAHAKGALLIVAITEAMSLGLLKSPGACGADIVVAEGQSFGVPLSFGGPY
                     VGLFATRDKYARQIPGRLVGEAYDKKGRRGFVLTLATREQHIRREKATSNICTNEG"
     gene            complement(999..1391)
                     /gene="gcvH"
                     /locus_tag="VGD38_04295"
     CDS             complement(999..1391)
                     /gene="gcvH"
                     /locus_tag="VGD38_04295"
                     /inference="COORDINATES: protein motif:HMM:TIGR00527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HEY0727266.1"
                     /translation="MANVPEDLHYSKDHEWVRVEGDQAIIGITDYAQNSLGDVVYVEL
                     PKTGEEFGANEPFGSVESVKAVSEVFTPVAGSVVTINESLADEPEKVNSDPYGEGWMI
                     RLKMANPGDVDSLLTAAEYEDFTKAESE"
BASE COUNT          293 a          460 c          440 g          379 t
ORIGIN      
        1 tccctcgttg gtgcagatgt ttgacgtcgc tttttcacgg cgaatgtgtt gctcgcgcgt
       61 ggcgagcgtc aacacaaaac cgcgccggcc tttcttgtcg taagcctcgc ccacgagccg
      121 tccgggaatt tgccgcgcgt acttgtcacg cgtcgcaaag agcccgacgt atgggccacc
      181 aaacgacagc ggcacgccga acgattggcc ttcggcgacg acgatatcgg cgccgcacgc
      241 gccgggcgat ttcaacagtc ccaaagacat cgcttccgtg atcgcgacga tgagcagagc
      301 gcctttcgcg tgagcggcgt cggcgagtgc tttgagatct tcgatgcagc cgaagaagtt
      361 tggcgactgg accacgagcg ccgcggtttt atcgtccacg gcgtttgcca gtgctgctcc
      421 ggcttgaccg gtcttttcgt cgaactccgc gatctcgaga tcgattccgg cgtgctggac
      481 gtaagtcttt accacttcga gatactgcgg atgcaccgcc gcggaagcga tcactttcga
      541 gcggcgcgtg acgcgttccg ccatcaacac tgcttcggca agcgcggtcg agccgtcgta
      601 catcgacgcg ttcgccactt ccattcccgt taactggcaa accaacgttt gaaactcgaa
      661 gatggtttgc agtgtgccct gcgagatttc cggttggtac ggcgtgtaag cagtgaagaa
      721 ctcggaacgc gagatgatgt gatcgacgat ggtggggatg taatgcgaat acgcgcccgc
      781 gccgaggaag ctggtgcgtt gcgcggccgc atttctccgg cccagacgtt cgaatttatc
      841 gagtagctct atttccgaaa gagctgcggg agtgtttagc ggccgctgta gtcgtaactc
      901 ttgtgggatt gagtcaaaca gttgctccgc ggacttgagt ccgattgcct cgagcatctc
      961 cgtgcgctct tccggcgagt taggaatgta gcgcaagatt attcgctctc agctttcgta
     1021 aaatcttcgt actcggcggc ggtcaacagg ctgtcgacgt cgccggggtt cgccatcttc
     1081 aaacggatca tccagccctc gccgtacgga tcggagttca ctttttccgg ttcgtctgcg
     1141 agcgactcgt taatcgtcac cactgagcca gcgacgggag tgaaaacttc cgacacggcc
     1201 ttcaccgatt cgaccgagcc gaacggttca tttgccccaa actcctcgcc tgtttttggc
     1261 aactcaacgt acactacgtc gcccaatgag ttttgggcat agtcagtgat gccgatgatg
     1321 gcttgatcgc cttcgaccct gacccactca tggtccttgc tgtagtgtaa gtcttctgga
     1381 acgttcgcca tggttcctcc agctaaatgt tttgtctttc tgtctacttc gctcgtttat
     1441 aaaacggcgt cttcactaac tgcgcccgca cgagtcggcc tcgcacgtcg atgctgatct
     1501 cctgccccac gtttgcatgt tcgctcggca cgtaggcaag cccgatgttc ttcttcaaat
     1561 atggtgcggg ac
//
LOCUS       DASWTX010000280         5819 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_308064, whole genome shotgun sequence.
ACCESSION   DASWTX010000280 DASWTX010000000
VERSION     DASWTX010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5819
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308064"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(15..1148)
                     /locus_tag="VGD38_04300"
     CDS             complement(15..1148)
                     /locus_tag="VGD38_04300"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF018613.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0727267.1"
                     /translation="MIRKVLLLSASAGAGHVRAAQAIEKAFAEIGDATGESREVQHLD
                     ILNYTNKLFRHLYSKAYIDLVNKVPEVPGWFYDKLDKPWKNERRRLALDKLNTRPLVK
                     LLREYHPDLIVCTHFLPAEIVSWLKAKERLSSRQVIIVTDFDVHAMWLVHHYEQYFVA
                     IDEARAYLEALGIPPEKITVSGIPIDPVFGQRKDKQQMRAKHGLAPDRTTILLSAGGF
                     GVGSVDALIAAMMPLQHRAQIVAICGRNEELKTRLSRQASRLKEDAAVVVKPFGYTNE
                     MDELMTASDIVLGKPGGLTTSEALAKGLAFAIVNPIPGQEERNSDHLLEAGVGIRCNN
                     LPTLAYKLDRLLADPARLANMQANSRKMGHPNAAKEIVERLIH"
     gene            complement(1155..1760)
                     /locus_tag="VGD38_04305"
     CDS             complement(1155..1760)
                     /locus_tag="VGD38_04305"
                     /inference="COORDINATES: protein motif:HMM:NF015871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HEY0727268.1"
                     /translation="MKLFRISIAVAAFAAFAILAHTQTRPATPAGAQPQTRPAAGPAN
                     IAIIDSSAFTDEKAGIARVMAAMKQMEAKFQPLRNELRGMRERLNTMRSDLQKKQGIQ
                     DAKVTAQQAEAADQLDLQIKRKAEDAQASYQKESLALLDPLQKDIGQALNVYAQQKGI
                     SLLLDVNRVPVVYAAKSLDITRDFIAEYNRTHPATAAPARP"
     gene            complement(1832..2620)
                     /locus_tag="VGD38_04310"
     CDS             complement(1832..2620)
                     /locus_tag="VGD38_04310"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY0727269.1"
                     /translation="MKKLAALFLLLSLGFCLDSQSQTPGAVRIGVFLSLTGATASYGV
                     SALNAIKLATEETNQNGGINGKKIELVVEDDHSNTQEVPGIVTKLIKEAKVDALIAEP
                     VSTRAMAAAPIAKTAKPDIIFAPGFYTTAPLVARTVKQLAIKSTLIGSDGWDSPDLLA
                     GGAAPFAGVYFANHFWIGSNEPLVRKFVKDYQTKYGIAPDAGAATAYDAAHLLFDAFK
                     RAKSTDKTAVRDALATTKDFPGRDRQNHDRRQSQCAGAGLYVKD"
     gene            2816..4882
                     /locus_tag="VGD38_04315"
     CDS             2816..4882
                     /locus_tag="VGD38_04315"
                     /inference="COORDINATES: protein motif:HMM:NF012271.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HEY0727270.1"
                     /translation="MKIRAKLVLLVTAALLIAGLIAIPRIIEAKRARAAAASVPPAAA
                     NPAQGRKQEIQSAISVRNDTSKPLREMKQLPIGAGRDKQRERNPNPKIPHFHKDSPDP
                     VVQPGFDAATDLFTAAMPATQLNFNGIGFPGVACNCAPPDTVGEVGATQYVQMVNEGF
                     QVFDKNTGASLLGPSGIQTVWQGFGGVCEFNGSGDPVVLYDQIADRWLISQFAGTSIP
                     TNECVAISATSDATGAYHRYDFNLGSNFFDYPHLSVWPDAYYMSMNVFNSLGTAFLGP
                     QPFAFDRAKMLQGLPATFVTPGITGGPLEETYLPADLDGSNLPPPGAPATFIQWPGGG
                     AYRIFHFHADFVTPANTTFTLFASTPAAGFTQLCPLTRSCVPQAGTTSRLDAIADRLM
                     FRTTYRNFGTHESVVGNYTVSSNGVAGIRWFELRNVTAGPVTVAQESTYQPDTTWRWM
                     GSAAMDRDGNLAIGYSASSATIFPQIRYAGRLATDPLNTLAQAEATLFAGTGSQTGTG
                     SRWGDYSALTVDPVDDCTFWFTSEYYATTTSFNWRTRIGSFKFPGCGGAPTPTPTPTP
                     TPTPTPTPTPTPTPTPTPTPTPTPTPIPLPAAPTNLNGTAVSSTQINLSWTDNANNEQ
                     GFRIERCQNNNCSNFVQIAQVGANVTSFSNTGLSGNKTYRYRVRAFNATGNSAFSNII
                     TVRTPK"
     gene            complement(4929..5654)
                     /locus_tag="VGD38_04320"
     CDS             complement(4929..5654)
                     /locus_tag="VGD38_04320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0727271.1"
                     /translation="MNKALGLMFVAVLAFAGCAKREASLNGNSTEKENQIEKVKPAPG
                     TGNVQGKVLYNGKPVENIDVRLCETFSRFLSGCGGQVYTAKTDKDGDFVITNVPPKEY
                     QGLTVRIFDTDGYVFATTGIAGIGAQKYNVEADKTLFVNPTNLFKADLKLVNPKAGSS
                     VSDPNVEFTWDAYPDAAYYKLTLTPDNHLSESRYVNQRIDGTTFKATKPLEKGGYQWK
                     VEAFNSADKKLSESDDRITFTVQ"
BASE COUNT         1184 a         1710 c         1587 g         1338 t
ORIGIN      
        1 ggctttacga atgttcaatg gattagtcgc tcaacaattt cttttgccgc attgggatgg
       61 cccatcttgc gtgaattcgc ctgcatgttt gcaagccgtg cgggatcagc caacaaccgg
      121 tccagcttat acgcgagcgt cggcaagttg ttgcaacgga tcccgacacc cgcttcgagc
      181 agatgatcgg agttgcgttc ctcctggccc ggaatcggat tcacgatcgc aaacgccaat
      241 cccttcgcca acgcttccga cgtagtcagt ccgccgggtt tgcccagcac gatgtctgac
      301 gccgtcatca actcgtccat ttcattcgtg taaccaaacg gcttgacgac gacggccgcg
      361 tcttctttta gacgcgaagc ctggcgcgac agacgtgtct tcagttcttc gttgcgcccg
      421 cagatggcaa cgatctgtgc gcgatgctgc aacggcatca tcgccgcgat caacgcatcg
      481 accgagccga caccaaaccc gccggccgaa agcaggatcg tcgtgcgatc cggcgcgagg
      541 ccgtgtttgg cgcgcatttg ctgtttgtct ttacgttgcc cgaagacggg atctatcggt
      601 ataccgctga ccgtgatctt ttccggcgga ataccaagcg cttcgagata cgctcgtgct
      661 tcgtcgatcg cgacgaagta ttgctcgtaa tgatggacca gccacatcgc gtgaacgtcg
      721 aagtccgtca cgatgatcac ctgccggctc gacaaacgct ccttagcttt caaccacgaa
      781 acgatctccg ccggaagaaa gtgcgtgcaa acgatcaaat cgggatgata ctcgcgcagc
      841 agtttcacga gcggacgcgt gttgagtttg tcgagcgcga gccgccggcg ttcgttcttc
      901 cacggcttgt cgagcttgtc gtagaaccag ccgggaactt ccggcacttt gttgactaga
      961 tcgatgtagg cctttgaata gagatggcga aagagcttgt tggtgtagtt gagaatgtcg
     1021 agatgttgca cctctcgact ttcaccggtc gcgtctccga tttctgcaaa ggccttttca
     1081 attgcctgtg cggcgcggac gtgccccgcg ccggctgagg cggagagtag caggactttt
     1141 ctgatcatcg acggttacgg tctcgcaggc gcggcagttg ccggatgcgt ccggttgtac
     1201 tctgcgatga agtctcgcgt gatgtcgaga ctcttagcgg catagaccac gggcacgcgg
     1261 ttaacgtcga gcaagagcga gatgcctttc tgctgtgcgt acacgttcag cgcctggcca
     1321 atgtcctttt gcaacgggtc gagcagtgcc agcgattcct tttgataact cgcctgggcg
     1381 tcttctgctt tacgcttgat ttgcagatcg agttgatcgg ctgcttcggc ttgctgtgcc
     1441 gttaccttcg catcctgaat tccctgcttc ttctggagat cggaacgcat cgtgtttagc
     1501 cgttcgcgca tgccgcggag ctcgttgcgc agtggttgaa acttcgcttc catctgtttc
     1561 atggcggcca tcacgcgggc gatgccggcc ttttcgtcgg tgaacgccga agagtcgatg
     1621 atggcaatgt tagctggacc agcagccggt cttgtttgcg gttgcgcgcc ggccggtgtg
     1681 gctggtctgg tttgcgtgtg tgccaggatg gcaaaggccg caaaagcggc gacggcaatg
     1741 ctgatacgaa ataacttcat tacatctgct ccttatggtt attgctgaac tgccggggat
     1801 gtactattcc agcgagaact ttccgttctt gtcaatcctt aacatataaa ccggcacctg
     1861 cgcattgcga ttggcgtcga tcgtgatttt gcctgtcacg cccgggaaaa tctttcgtcg
     1921 tggccagcgc gtcacgcacg gcggttttgt ctgttgactt ggcgcgtttg aaggcgtcga
     1981 acaacaggtg tgctgcgtcg taggctgttg ccgcacctgc gtccggcgcg atgccgtatt
     2041 tagtttggta gtctttgaca aacttgcgga ccagcggttc gttgcttcca atccagaaat
     2101 ggttggcaaa gtaaacgccc gcaaacggcg cggcgccgcc ggcgagtaga tcgggcgagt
     2161 cccagccgtc gctgccgatc aaagttgact tgatagctaa ttgtttgacg gtacgcgcga
     2221 caagcggcgc ggtcgtgtaa aaaccgggcg cgaaaatgat gtcgggtttt gcagtctttg
     2281 cgatcggcgc cgccgccatc gctcgcgtgc tgaccggttc ggcgatcaac gcatcgacct
     2341 tcgcttcctt gatcagttta gtgacgatgc cgggaacttc ctgcgtgttg gagtgatcgt
     2401 cttcaactac gagctcgatc ttcttgccgt tgataccgcc gttctggttg gtttcttccg
     2461 tcgcgagctt gatcgcattc aaagcagaga cgccgtaact cgctgtggct ccggtcagtg
     2521 aaagaaagac accgatcctc acggcgccgg gtgtttgtga ttgtgaatca agacagaaac
     2581 caagtgataa caagagaaaa agcgccgcta attttttcat gtgcgctatt aaaccagttt
     2641 cccgaaacgc cacaaagaac ggcccttttc gacctgccgg cggtccaatt ttcttgctcc
     2701 tgcccatcgg gctgtgatag cgtgccgccg acgtttttcg caccacacgc acggacacgc
     2761 cccatcccga gatgacacac gtctgttttc gaacttctga agttggagag acacaatgaa
     2821 aatacgagca aaactagttc tactagtgac cgcagctcta ctgatcgctg gactcatcgc
     2881 cattcctcgc atcatcgaag ccaagcgcgc gcgggccgca gccgcaagcg tcccacccgc
     2941 cgcagcaaac ccggctcagg gtcgaaaaca ggagattcaa agcgccattt ccgttcgcaa
     3001 cgacacctca aaaccgttgc gtgagatgaa acaactgccg ataggcgctg gtcgcgataa
     3061 gcaacgcgaa cgcaatccca accccaagat tccgcacttc cacaaggaca gtcccgatcc
     3121 ggtggtccaa cccgggttcg acgcggcgac ggatcttttc accgcagcga tgcccgctac
     3181 gcagttgaac ttcaacggca tcggctttcc gggagtggct tgcaactgcg ctccgcccga
     3241 cacagtcggc gaagtcggtg cgacgcagta cgtgcagatg gtcaacgaag gcttccaggt
     3301 cttcgataaa aataccggcg cgtcgctgct tggtccatca ggcatccaga cagtgtggca
     3361 gggcttcggc ggcgtttgcg aattcaacgg cagcggcgac ccggtcgtgc tttacgatca
     3421 aatcgccgat cgctggctca tctcgcagtt tgccggcacg tcgattccga ccaacgaatg
     3481 cgtggcgatc tccgcgacca gcgacgcaac cggcgcgtat catcgctacg acttcaatct
     3541 cggttcaaac ttcttcgact acccgcactt gagcgtctgg cccgatgctt attacatgag
     3601 catgaacgtc ttcaactcgc tgggcacggc gttccttgga ccacaaccct ttgctttcga
     3661 tcgcgcgaag atgctccagg gacttccggc gactttcgtc acgcccggca tcacgggtgg
     3721 accactcgaa gaaacttatt tgccggcgga tctcgacggc tcgaacctgc cgccacccgg
     3781 agcaccggcg acgtttattc aatggcctgg aggaggcgcg tatcgcatct tccacttcca
     3841 tgcggacttt gtaacacccg cgaacacgac gttcaccttg ttcgcgagta cgcccgcggc
     3901 cggctttacg caactttgcc cgctcacacg atcgtgtgta ccgcaagccg gaacgacgtc
     3961 gcgactggat gcgatcgcgg atcgtttgat gttccggacc acgtatcgca acttcggcac
     4021 gcacgaatcc gtggtcggca attacaccgt tagctcgaat ggcgtggcgg gtatacgctg
     4081 gtttgagttg cgtaacgtca cggctggtcc agtcaccgtc gcgcaggaga gcacttatca
     4141 acccgacacg acgtggcgct ggatgggcag tgcggcgatg gaccgcgacg gcaatctcgc
     4201 gatcggttac agcgcgtcga gtgcgacgat cttcccgcag attcgttatg cgggaaggct
     4261 ggccactgat ccgctgaaca ccttggcaca ggccgaagcg acgctcttcg cgggcacggg
     4321 aagtcaaaca ggaaccggca gccgttgggg cgactacagc gctttgacag tcgatcctgt
     4381 agatgactgc acgttctggt tcacgagtga gtattacgcg acgacgacga gtttcaactg
     4441 gcgcacgcgc atcgggtcgt tcaagttccc gggttgtggt ggtgctccaa cgccaactcc
     4501 gacgccgaca cccactccga caccgacgcc tacgcccact cctacaccaa ctcctacacc
     4561 aactcctaca ccaacgccga ccccgactcc gattccattg ccggccgccc cgacgaatct
     4621 gaacggaaca gcagtatcgt caactcagat caatctgtcg tggacggata atgcgaacaa
     4681 cgaacaaggg ttccggatcg agcgctgcca gaacaacaac tgctcgaact tcgtgcagat
     4741 cgctcaggtg ggcgctaacg taaccagctt ctcgaatacc ggactgtccg ggaacaagac
     4801 ctatcgctat cgcgttcgcg cgttcaatgc gacaggtaac tcggccttct cgaacatcat
     4861 tacagttcgc acgccgaagt agctgaacga gcctctgagg tggcccatgt gggccacctc
     4921 agagcgcttt attgaactgt gaacgttatc cggtcgtcac tctccgacag ctttttatcc
     4981 gccgagttaa aagcctcaac cttccactga taaccaccct tctccagcgg ctttgtggct
     5041 ttgaatgtag ttccgtcgat acgttgattg acgtagcgcg attcactcag gtgattgtcg
     5101 ggcgtgagcg tgagtttgta gtacgcggca tccgggtaag cgtcccacgt gaattcgacg
     5161 ttcggatcac tgacagatga gcccgccttc ggattcacca gtttgagatc cgctttgaat
     5221 aagttcgtgg gattgacgaa cagcgtcttg tcggcttcga cgttgtattt ctgggcgccg
     5281 atgccggcga tgccggtcgt tgcgaaaaca taaccatcag tgtcgaagat acgcactgtc
     5341 agaccttgat attctttcgg cggcacgttc gtgattacga aatcgccgtc cttgtcagtc
     5401 ttggccgtgt aaacctgccc gccgcagccg ctcaggaacc ggctgaacgt ttcgcacagc
     5461 cgcacgtcga tgttctcgac cggcttgccg ttgtaaagga ccttgccttg cacgttgccg
     5521 gttcccggcg cgggcttcac tttttcaatt tggttttctt tctctgttga attcccgttc
     5581 aaactggcct cacgcttagc gcaccccgcg aaagccagaa ccgccacaaa cattaaaccc
     5641 aacgctttgt tcattctgat tgtcctctca tgccaaatac gcgatcgaaa aaagcagccg
     5701 tcgccgcgtt caccttcacc atattcgcgt gcaaaaagaa atgatgcgtg tcgtccggaa
     5761 ttattagttc ttcataagtc acgcccgctt tgtccaaacg cctcaccagg tctgtcgtc
//
LOCUS       DASWTX010000281         1921 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_26068, whole genome shotgun sequence.
ACCESSION   DASWTX010000281 DASWTX010000000
VERSION     DASWTX010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1921
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26068"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1520)
                     /locus_tag="VGD38_04325"
     CDS             complement(<1..1520)
                     /locus_tag="VGD38_04325"
                     /inference="COORDINATES: protein motif:HMM:TIGR01733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEY0727272.1"
                     /translation="MSHESVQELFSRAAAEFGPAVAIERGERQLTYAELERESNRLAN
                     FLLAGGAGQGTMVGLFSEDPLRIITGILGVLKAGAVFVPLDPTFPEGRLRVMSERVEP
                     QWYVTESKHLAQLEPLRRGAAQTICLDDFAYEDCEHPGLTSDPEAPCSIYFTSGSTGK
                     PKAILGRLKGIDHFMRWEIAAVAAGAGTRVSQLASPSFDGFLKDAFVPLCTGGVVCAP
                     ENRAVVLDARRLVEWLNAARIAVLHCVPSLFRALLNERLSNADFAALQSVVLTGEPLY
                     PADVKRWLDVFGTRVQLFNIYGTTETSLSKFVYQVKPEDIERPSIPVGKPIKGSALML
                     INSRGQLCREETVGEIHIRTPYRSYGYYGEPELTAAVFIQNPFSDDPNDLVHKTGDYG
                     RLLKSGDLEHLGRRDQQVQIRGVRVELGELENLLRAHPGVADVAVIDRDDADGNKLLA
                     AYLMLKNGTGSEELRSYLAQLVPPTMLPSAFLALEQLPRTLNGKIDRKALPALETL"
     gene            complement(1524..>1921)
                     /locus_tag="VGD38_04330"
     CDS             complement(1524..>1921)
                     /locus_tag="VGD38_04330"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEY0727273.1"
                     /translation="NLAEAENFRDVMQRVRQTCLDAYTHHVTPELLREDLALRGEERE
                     RLFDVWFQFEREEREKLQLSGLECEWYRVHFQDPKFELSLMLAEVKNEIVGLLEYDPG
                     LYDEEMIGEMAKSYTSLLERAVGDPDGRI"
BASE COUNT          389 a          654 c          504 g          374 t
ORIGIN      
        1 ctcagtgtct ccaacgcagg caaagccttg cgatcgatct tgccgttgag ggtgcgcggc
       61 agttgctcca acgcgagaaa ggcggagggc agcatcgtgg gcggtaccag ttgcgccagg
      121 taggaacgta actcctcgct gccggtccca ttcttcaaca tcaggtaagc cgccagcagt
      181 ttgttgccgt cggcatcatc gcggtcgatg acggccacat cggcgacgcc gggatgcgca
      241 cgcaagaggt tctcgagttc gcccaactcc acgcggacgc cgcgaatctg cacttgctga
      301 tcgcggcggc ccagatgctc gaggtcgccg cttttgagca gccggccgta gtcgcccgtc
      361 ttgtgcacga ggtcgttcgg atcgtcactg aacgggttct ggatgaacac ggccgccgtc
      421 aactccggct ccccgtaata gccgtatgaa cgatacggcg tgcgaatgtg gatctcgccg
      481 acagtctctt cgcgacagag ttggccacgc gagttgatca gcatgagggc agagcctttg
      541 atcggtttgc cgacgggaat ggaggggcgt tcgatgtcct cgggtttgac ctgatagaca
      601 aacttcgaca ggctcgtctc agtagtgccg tagatgttga agagctgcac ccgcgtgcca
      661 aacacatcca gccagcgctt cacgtccgcc ggatacaacg gttcgcccgt cagcactacg
      721 ctctgcaacg ccgcaaagtc agcattgctc agtcgttcat tcagcaacgc gcgaaacaac
      781 gaagggacac agtgcagcac ggctatccgc gccgcgttca accactccac caaccgccgt
      841 gcgtccagca ccacggcccg gttctccggc gcacaaacca cgccgcccgt acacagcggc
      901 acaaacgcat ctttcaagaa cccgtcaaac gacggcgacg ccaactggct cacgcgcgtg
      961 cccgccccgg ccgccaccgc cgcgatctcc cagcgcatga agtggtcgat gcctttcaac
     1021 cgtcccagaa tcgccttcgg cttgcccgtc gaacccgagg tgaaatagat cgaacacggc
     1081 gcttccggat cgctcgttaa ccccggatgt tcacaatcct cataagcaaa gtcatccagg
     1141 caaatcgtct gcgcggcgcc gcgccgcaag ggctcgagtt gcgccagatg cttgctttcc
     1201 gtcacatacc actgcggctc cacgcgttcg ctcatcaccc gcagccgccc ttcgggaaac
     1261 gtcgggtcca gcggcacaaa caccgcgccc gctttcaaca cgcccagaat gccggtgatg
     1321 atgcgcagcg ggtcttcact gaagagaccc accatcgtgc cctggccagc gcctcctgcc
     1381 agcagaaagt tggccagccg gttcgactcc cgttccaact cggcgtaggt cagttgccgc
     1441 tcgccgcgct cgatcgccac cgctggccca aactccgcgg ccgcccggct gaataactcc
     1501 tgcacgctct cgtgactcat cctttatatc cgcccgtcag gatcgccgac cgctcgctcc
     1561 aataaactcg tatagctctt cgccatctcg ccgatcattt cctcgtcata cagaccaggg
     1621 tcgtattcaa gcaggccaac aatctcgttt ttgacctccg ccagcatcag cgacaactca
     1681 aacttgggat cctggaagtg cactcgatac cactcacact ccaatccact cagctgcagt
     1741 ttctctcgct cttcacgttc gaattgaaac cacacgtcga acaaacgttc tctttcttcg
     1801 ccgcgcagtg cgagatcttc cctgagcagc tcgggtgtca cgtgatgagt gtaggcatcg
     1861 agacacgtct gtcttactcg ttgcatcacg tcgcgaaaat tctcagcctc cgcaaggttc
     1921 a
//
LOCUS       DASWTX010000282         1835 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_285723, whole genome shotgun sequence.
ACCESSION   DASWTX010000282 DASWTX010000000
VERSION     DASWTX010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1835
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285723"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            163..1485
                     /locus_tag="VGD38_04335"
     CDS             163..1485
                     /locus_tag="VGD38_04335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727274.1"
                     /translation="MKTFARMLIALSAVILLSLTLIPTSPATNAHAFTTTNAPLAPLD
                     LSGELHGAPYRIRVPENWNGTLLVFAHGYRDKADHPGEVDNRNADIAPNAALEAPLLA
                     QGFALAGTAFKDNGWAIGDSMEDTKTLAVYFRTHIAKPDRTILWAASVGTVGAFKSME
                     QFNGIFDGALCLCAVGAGATRVWDTGLPAYLAYDVVFGVPPAWGTVGEVRNDINFETE
                     VVAKLGPELANPTNFPAFEFIRLVAGTPGRGITPPPPPAFYPGWALTDFFFLTEARSE
                     LQRRAGGPFVQNLDHNYSLTTAEKTYLAGLGLPTPVVDGWLAQMNARRNIVADPKARN
                     YVRNNTDYNGKIRNPVLTLHTAIDPLVVVSNEAAYAELIASANKQDLLFQTYTNANGH
                     CNFTGPQILTAVGAIDLWVRTGVRPTNAQFPAALGFNSAFVPPPLLQP"
     gene            1558..>1835
                     /locus_tag="VGD38_04340"
     CDS             1558..>1835
                     /locus_tag="VGD38_04340"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEY0727275.1"
                     /translation="MSSVPLTQAVTSGDAGAVNAVLANGADVNERTRGGQTPLILATI
                     FGHTHLIPLLLDAGADPQLRDNLGLNAIDWAQRRGATEVIDVLSNNASR"
BASE COUNT          397 a          648 c          463 g          327 t
ORIGIN      
        1 aatctccaac cagtagaaca ctctttctga tccgttagat ccgcatcggt tcatccgcaa
       61 aatcgcagcg acgcagtcgc tgcccgtgaa ccttgccgct agcggacctc cgtgatagtc
      121 tccgtccctc ctgaaatctc aatcaaagag gggcctgtca ccatgaaaac cttcgcgaga
      181 atgctcatcg cgctgagcgc ggtcatacta ctttctctaa cgctaatccc gacatcgccc
      241 gcaaccaacg cccacgcgtt caccacgaca aacgcgccgc tcgcgccact cgatctctcc
      301 ggcgaactcc acggcgcgcc gtaccgcatc cgcgtccccg aaaactggaa cggcacgcta
      361 ctcgttttcg cgcacggcta tcgcgacaaa gccgatcacc ccggcgaagt cgacaaccgc
      421 aacgccgaca tcgcacccaa cgccgccctc gaagcgccct tgctcgcaca aggcttcgcg
      481 ctcgccggca ccgcgttcaa agacaacggt tgggccatcg gagacagcat ggaggacacg
      541 aagactctcg cagtctattt ccgcacccac atcgctaaac ccgaccgcac gatcctttgg
      601 gccgcctcgg tcggaaccgt cggtgccttc aagagcatgg aacagttcaa cggcattttc
      661 gacggcgcgc tgtgcttgtg cgccgtcggc gcgggagcga cacgcgtgtg ggacaccggt
      721 cttccagctt atctcgctta cgacgtcgtg ttcggcgtcc caccagcgtg gggcactgtc
      781 ggcgaagtcc ggaacgacat caacttcgaa actgaagtcg tcgccaaact cggacccgaa
      841 ctcgccaacc cgacaaactt tcccgcgttt gaattcattc gactcgtcgc cggaactccc
      901 ggccgcggca tcacgccgcc tccgccgccc gcgttctatc cgggctgggc gctgaccgac
      961 ttcttcttcc tcaccgaagc acgctccgaa ctgcaacgac gcgcaggtgg tccattcgtt
     1021 cagaacctcg atcacaacta cagtctgaca acggcagaaa agacctatct cgccggactc
     1081 ggtttaccca cacccgtggt cgacggctgg ctcgcacaga tgaacgcgcg ccgcaacatc
     1141 gttgccgatc caaaagcacg gaactacgtt cgcaacaaca ccgattacaa cggcaagatc
     1201 cgcaacccgg tgttgacgct gcacacggcg atcgatccgc tggtcgtggt ttcgaacgaa
     1261 gcggcttacg ccgaactgat cgcgtcggcg aacaaacaag acttgctgtt ccagacctac
     1321 accaacgcaa acggccactg caatttcacc ggaccacaaa tcctgaccgc agtcggcgcg
     1381 atcgatctgt gggtccgcac gggcgtgcgg ccaaccaacg cacagttccc ggcagcactc
     1441 ggcttcaact cagcattcgt gccaccgccg ctgctgcaac cgtagccgtt tcgccttttt
     1501 cacaatcgcc tttaaactac gcaagagccc ccaagctcta tcgaagggac ttttgctttg
     1561 agctccgttc cgttaacgca agcggtaact tccggcgacg caggcgcggt caacgctgtg
     1621 ctggctaacg gagccgacgt caacgaacgc acccgcggcg gtcaaacgcc gctcatcctc
     1681 gccacgatct tcggtcacac gcatctcatc ccgctgctgc tcgacgcggg cgccgatccg
     1741 cagttgcgag acaatctcgg tctcaacgca atcgactggg cgcaacgaag aggcgccacg
     1801 gaagtgatcg atgtgctcag caacaacgcg agtcg
//
LOCUS       DASWTX010000283         1746 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_351525, whole genome shotgun sequence.
ACCESSION   DASWTX010000283 DASWTX010000000
VERSION     DASWTX010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1746
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351525"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..907)
                     /locus_tag="VGD38_04345"
     CDS             complement(<1..907)
                     /locus_tag="VGD38_04345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-N-arabinofuranosidase"
                     /protein_id="HEY0727276.1"
                     /translation="MWLPAQAQNSYQATLTIRMDQPGAAINRNIYGQFAEHLGRLIYE
                     GLWVGEDSPIPNTRGLRNDVVAALKELHVPLLRWPGGCFADEYHWRDGIGPRDKRPRR
                     PNASWGGVDTNAFGTHEFLDLCEMLGADAYVNGNVGSGLPQEMMEWIEYMTSDADSDL
                     ANLRRKNGRDKPWKIPYFAVGNETWGCGGNMRPEYYSDVYRQYATFIKNHSGNKIQKL
                     AVGGYDENYNWTEVLMSQAAKHMDGLSLHYYTLPTGKWDKKGSATEFGENEWHATLVR
                     TLRMDEYIRKHSAIMDKYDPEKRVGL"
     gene            complement(978..>1746)
                     /locus_tag="VGD38_04350"
     CDS             complement(978..>1746)
                     /locus_tag="VGD38_04350"
                     /inference="COORDINATES: protein motif:HMM:NF037850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4982 domain-containing protein"
                     /protein_id="HEY0727277.1"
                     /translation="EEHWKLVKKHDWFSGMYIWTGWDYLGEPTPFPWPAVSSYFGIVD
                     LAGFPKDPYYFYQSEWTNTPVLHLVPHWNWKPGEKVDVVAYFNNADEVELLLNGRSQG
                     VKRKEGDDMRVFWRLSFEPGVLKAVSRKNGHPVLTKEVRTAEAPAKIVLSPDRETIKA
                     DGVDLSFVTVKVVDKNGTLVPDASNLIRFEVVGPGSIAGVDNGNQISHEPFKANQRKA
                     FHGMALAIVQTKRRPGRIVLKASSGNLSPASVVINAR"
BASE COUNT          340 a          531 c          477 g          398 t
ORIGIN      
        1 tcaggccgac gcgcttctcc ggatcgtact tgtccatgat ggcgctgtgc ttccggatgt
       61 actcatccat gcgcagcgtc ctgaccagcg tcgcgtgcca ctcgttctcg ccgaactccg
      121 ttgccgaacc cttcttgtcc catttgccgg tcggcagcgt gtagtaatgc agcgagagtc
      181 catccatgtg cttcgctgcc tgcgacatca gcacttcggt ccagttgtag ttctcgtcgt
      241 aacctccaac cgcgagcttc tggatcttgt tgcccgaatg gttcttgatg aacgtcgcgt
      301 attgccggta gacgtcggag taatactcgg gccgcatgtt tccgccgcag ccccatgtct
      361 cgttgccgac ggcgaaataa ggaatcttcc acggtttgtc gcggccgttt ttgcggcgca
      421 ggttggcgag atcggagtcg gcgtcggaag tcatgtactc gatccactcc atcatctcct
      481 gcggcaagcc gctgccgacg ttgccgttga cgtaagcatc cgcgcccaac atctcgcaca
      541 gatcgagaaa ctcgtgagtg ccgaaagcgt tcgtgtccac gccaccccag ctcgcgttgg
      601 gccgtcgcgg acgtttgtcg cgtggaccaa tgccgtcgcg ccagtgatac tcgtcggcga
      661 agcacccgcc gggccagcgt agaagcggaa catgcagttc cttgagtgcg gcgacgacgt
      721 cgttgcgcag accgcgcgtg ttcgggattg gcgagtcttc gccgacccaa agaccttcgt
      781 agatcaggcg tccgaggtgt tcggcaaact ggccgtagat gttgcggttg atcgcggctc
      841 ccggctggtc catgcggatc gtgagcgtcg cttgatacga gttctgtgcc tgtgccggaa
      901 gccacaaaga ggcacaaaag gcacagaagg cacaaaagct taaaaacaat agtgtgtgct
      961 ttttggcttt cattgcttta acgagcgttg atgactactg aagcgggcga caaattaccc
     1021 gaactcgctt tcaacacgat tcgcccgggc ctgcgtttcg tttgaacgat cgccagcgcc
     1081 attccatgaa acgctttgcg ctgattggcc ttgaacggtt cgtgactgat ctggtttccg
     1141 ttatcgacac ccgcgatcga gccgggtcca actacttcga acctgatgag attactcgcg
     1201 tccggcacaa gcgtgccgtt cttgtctaca accttcacgg ttacgaatga aagatccacg
     1261 ccatcagcct tgatcgtttc gcggtcggga ctcagaacga tcttcgccgg tgcttccgcc
     1321 gtgcgcactt ccttcgtcaa cactggatgg ccgttcttgc gcgacactgc tttcaacacg
     1381 cccggctcaa acgaaagccg ccagaacacg cgcatgtcgt cgccctcttt gcgcttcaca
     1441 ccctgcgaac ggccgttcag caacagctca acttcatcgg cgttgttgaa atacgcgacg
     1501 acgtcaacct tctcgccggg tttccagttc cagtgcggca caaggtgcaa gaccggcgtg
     1561 ttggtccatt cactctggta aaagtagtac ggatctttcg gaaaaccggc gaggtcgacg
     1621 atgccgaaat aggaactcac cgccggccac ggaaacggcg tcggctctcc gagatagtcc
     1681 cagccggtcc agatgtacat acccgaaaac caatcgtgct tcttcacgag cttccaatgc
     1741 tcttcg
//
LOCUS       DASWTX010000284         3295 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_285733, whole genome shotgun sequence.
ACCESSION   DASWTX010000284 DASWTX010000000
VERSION     DASWTX010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3295)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3295)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3295
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285733"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(19..1314)
                     /locus_tag="VGD38_04355"
     CDS             complement(19..1314)
                     /locus_tag="VGD38_04355"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: protein motif:HMM:NF002772.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008878 - glucose-1-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0005978 - glycogen biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HEY0727278.1"
                     /translation="MPANTKLLAVILGGGAGNRLFPLTQQRSKPAVPLGGKYRLVDIA
                     LSNCINSDILRTFVLTQYNSASLNRHIAQTYRFSQFSNGFVEILAAEQTPESPQWFQG
                     TADAVRQVLPHIRDWGIDTLLILSGDHLYRMDYRQFLQRHHESNADVTVSVIPCEARS
                     ASEFGLLKTDEHGRIVEFKEKPKGDDLLSMQVDTTTLGLDANEAKRRPYLASMGIYVF
                     KYDRLEQLLNDDPSWMDFGKEVIPAAIRSGPVQAFMFDGYWEDIGTIGAFYRANLDLT
                     TKIPKFNLFDAEAPVFTRARYLPPSKIEETEINDSIVSDGCIINGAKITNSVIGLRSR
                     ISKGVQMEASFMMGADFYQTFEDMRRDHGRSLPRVGIGEGTVIKRAIIDKNARIGNNA
                     RLLNEAGTTAADGPNGSYYIRDSIIIVPKNAVVPDGTVI"
     gene            complement(1346..2242)
                     /gene="deoC"
                     /locus_tag="VGD38_04360"
     CDS             complement(1346..2242)
                     /gene="deoC"
                     /locus_tag="VGD38_04360"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004139 - deoxyribose-phosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0009264 - deoxyribonucleotide catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HEY0727279.1"
                     /translation="MAYSSNGDYERLIEQITDAIVARLNGDGEQAAMCGCTSECFHRC
                     PERMHRIVDAGAARIGLVLGETATAREWASLIDHTLLKPEATDEDIKKLCQEAASYRF
                     ASVCVNPTWVRIAACNLRGSGVPVCTVIGFPLGATLPDVKAYEARRALLDGATELDMV
                     INVGALKSGDDCLVEHDIRSVAEVAHEYDAICKVIIETALLTDDEKVRACLAAKKAGA
                     DFVKTSTGFSKGGATVADVALMRRTVGSELGVKASGGVKGLEDARKMVEAGATRIGAS
                     VGVKIAQEAAGAKPTASRSLAY"
     gene            complement(2264..3028)
                     /gene="rpiB"
                     /locus_tag="VGD38_04365"
     CDS             complement(2264..3028)
                     /gene="rpiB"
                     /locus_tag="VGD38_04365"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEY0727280.1"
                     /translation="MENDSTRDRLRALVRDVLEKAGPAPESTPTRFVNTIPETETQAA
                     GVTRDESSKSVITEDDVRGLDHGAVLRIGEDARLTPLAADIVKERNIQLVRRNSRRGS
                     KASKLIAVGADHGGFKMKEELKGLLVQLGHKVQDFGTDSEDAVDYPDFAHAVARAVAN
                     GTSDLGIIIDGAGVGSAMTANKVPGVRAAACYSVAVARNSREHNGANVLSLGSKTISS
                     AEMRDIVTAWLSTDLTEDRHRKRVAKIDAIQRQYQR"
     gene            complement(3028..3258)
                     /locus_tag="VGD38_04370"
     CDS             complement(3028..3258)
                     /locus_tag="VGD38_04370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727281.1"
                     /translation="MSDTVVASQVDGIDFIASGHSHLFMERPAEQTQPCGAKTLIFQV
                     GKSGINVGRVDFTFKTGKLIGASGRLLDLRTV"
BASE COUNT          611 a         1023 c          946 g          715 t
ORIGIN      
        1 atgactcgac caccttgttt aaatcacagt gccgtccggc acgaccgcgt tcttcggcac
       61 gatgatgatg ctgtcgcgaa tgtagtacga accgtttggt ccatcagccg ccgtcgtgcc
      121 cgcttcgttc agcagtcgcg cgttgttgcc gatgcgcgcg ttcttgtcga tgatggcgcg
      181 cttgatgaca gttccctcac ctatcccgac gcgcggcaaa cttctaccgt ggtcgcggcg
      241 catgtcttca aacgtctggt agaagtcggc gcccatcatg aacgacgcct ccatctgcac
      301 gcccttcgag atgcggctgc gcagtccgat caccgaattc gtgatcttcg cgccgttgat
      361 gatgcagccg tcgctgacga tcgaatcgtt gatctccgtc tcttcgatct tcgacggcgg
      421 caggtagcgc gcgcgtgtga acaccggcgc ttcggcgtcg aacaggttga acttcgggat
      481 cttcgtagtc agatcgagat tcgcgcgata gaacgcgccg atcgttccga tgtcttccca
      541 gtagccgtcg aacatgaacg cctgcacggg accggaacga atagccgccg ggatcacttc
      601 tttgccgaag tccatccagc tcggatcgtc gttcagcagt tgctccaaac ggtcgtactt
      661 gaaaacgtaa attcccatcg acgcgagata cggccggcgt ttcgcttcgt tcgcatcgag
      721 accgagtgtc gttgtgtcga cctgcatcga aagcaggtcg tcgcctttcg gtttctcttt
      781 gaactcgacg atgcgtccgt gctcgtcagt cttcaacaaa ccaaactcac tcgccgaacg
      841 cgcctcacac ggaatcacgg acaccgtcac gtcggcattc gactcgtgat ggcgctggag
      901 aaactgtcga tagtccatgc gatacaaatg atcgccggaa aggatcagca gcgtgtcgat
      961 gccccagtct ctgatgtgcg gcagcacttg tcgcacggcg tccgctgttc cctgaaacca
     1021 ctgcgggctt tcgggtgttt gttccgccgc gagtatctcg acaaagccgt ttgagaattg
     1081 cgagaagcga tacgtttgcg cgatgtgtcg attgagtgaa gcggagttgt actgcgtcaa
     1141 cacaaacgtg cgcaggatgt cggagttgat gcagttggaa agcgcgatgt cgacgagacg
     1201 atacttaccg ccgagtggaa cggcgggttt cgagcgttgt tgcgtgagcg gaaagaggcg
     1261 attgccggcg ccgccgccga gaatgaccgc taacagtttt gtattcgcag gcatgagtta
     1321 atctttgcac ggggaaaaac acttgttagt acgctaacga tcttgaagcc gtgggctttg
     1381 cgccggcggc ttcctgcgcg atcttcacac cgacgctcgc gccgatgcgc gtcgcgccgg
     1441 cttcaaccat cttgcgcgcg tcttcgagac ctttcacacc acctgaagcc ttaacaccta
     1501 attccgatcc gaccgtgcgt cgcatcaacg cgacgtcggc aacggtcgcg ccgcctttcg
     1561 aaaatcccgt cgacgttttc acaaaatccg caccggcttt ctttgccgca agacatgcgc
     1621 gcaccttctc gtcgtcagtc aacaaagcgg tttcgatgat gactttgcag attgcgtcgt
     1681 actcgtgtgc gacttccgcc acggagcgta tgtcgtgttc gacaagacaa tcgtcgccgc
     1741 tcttcaacgc gccgacgttg atgaccatgt cgagttccgt tgcgccgtcg agcagcgcgc
     1801 gccgcgcttc gtaagctttg acgtcgggca gcgtcgcgcc gagcggaaag ccgatgacgg
     1861 tacaaaccgg cacaccgctg ccgcgcaggt tgcacgccgc gatacgcacc cacgtcggat
     1921 tcacacacac agacgcaaac cggtagctcg cggcttcctg acacagtttt ttgatgtcct
     1981 catccgtcgc ctcgggcttc agcagcgtgt gatcgatcag gctggcccat tctctcgcgg
     2041 tcgccgtctc accgagcacg agcccgatcc gcgcggcgcc cgcatccaca atgcggtgca
     2101 tccgctcggg gcagcgatga aaacactccg acgtacaccc gcacatcgcg gcctgttcgc
     2161 cgtcaccatt caaccgcgcc acaatcgcgt cggtaatctg ttcgattaat ctctcgtaat
     2221 cgccgttact ggagtaggcc atgggcggag tcattctacc aagctagcgc tggtactgtc
     2281 gctggatggc gtcaatcttc gcgacgcgct tgcggtggcg atcttcggtg agatcggtgg
     2341 agagccaggc ggtgacgatg tcgcgcatct cggcgctgga gatggttttg ctgccgagtg
     2401 agaggacgtt ggcgccgttg tgctcgcgtg agttgcgcgc gaccgcgact gagtaacagg
     2461 ccgcggcgcg aacgccggga actttgttcg ccgtcatcgc actgccgaca cctgcaccgt
     2521 cgatgatgat gccgagatcc gatgtgccgt ttgcgacagc acgcgcgacg gcgtgcgcga
     2581 aatccggata gtcgacggca tcttccgaat cggtgccgaa gtcctgcact ttgtgaccga
     2641 gttggaccag caggcccttc aactcttcct tcatcttgaa cccgccgtga tccgcgccaa
     2701 cggcgatcag cttcgacgct ttcgaaccgc gccgcgaatt gcgccgcacg agctgaatgt
     2761 ttcgctcttt gacgatatcc gcggcgagcg gcgtcaggcg cgcgtcttcg ccgatgcgca
     2821 agaccgcgcc gtggtccaac ccgcgcacgt cgtcttcagt gatcacgctc ttcgacgact
     2881 cgtcgcgcgt cacaccggcg gcctgcgtct ccgtctcggg aatcgtgttg acgaagcgcg
     2941 tcggcgtgct ctccggcgca ggcccggctt tttcgagcac gtcgcgcacg agagcacgga
     3001 gtcgatcgcg agttgagtcg ttttccatta aacggttctc agatcaagca gacgcccgct
     3061 ggcgccgatc agttttcctg tcttgaacgt gaaatcaacg cggcccacgt tgatcccgct
     3121 cttgccgacc tggaagatca acgtcttcgc accacagggc tgcgtctgct cggccggacg
     3181 ctccataaac agatgactgt gaccgctcgc gatgaagtcg atgccgtcga cctgcgaggc
     3241 caccaccgtg tcgctcacgc tattcgctct cggtgtttcg gactagccga gatgc
//
LOCUS       DASWTX010000285         2154 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_89897, whole genome shotgun sequence.
ACCESSION   DASWTX010000285 DASWTX010000000
VERSION     DASWTX010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2154
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89897"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2077
                     /locus_tag="VGD38_04375"
     CDS             <1..2077
                     /locus_tag="VGD38_04375"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0727282.1"
                     /translation="SANFLATLGVKPIRGRDFLAEDDRQGAAPTVMLSYALWQRRFGG
                     DEKIVGQQLTLNRERFTVIGVTPENFEYGLDADLTVPIGLSTERFSARGRDPGIQSIA
                     RIKQGVSTETANAELNTIAARLEQQYPESNNNRRVRIESLRETLVGDIRPMLLTLLGA
                     VGLVLLIACANVANLLLARSARRQKEIAVRTALGAGRSRILRQLFTESAMLALGAGIV
                     GLLLALVGTALLASSLPEGLPFVPEIRTDAYVLLFTFGVSLVTGLLFGLAPALQTSNP
                     ALTETLKEGERNSSPGHNRTGKILVVAEVALTLVLLIGAGLLVKSFWRLMQVDPGFNP
                     ENLLALQISVNAGANEGPRVASFLDQLQQRVKELPGVQSVAISNGLPFEGANWPAFII
                     EGQAPPEPGREPNGILYITSTGYLETLGITLLRGRGFSAHDTPGTTPVVLIDEVFARL
                     YFPNEDPLGKRLRQAGPNSPSREIIGIVRHVEHSNLAGLSAESGEVYTPFSQIPVETL
                     PRYVRRVNLVVRTTVEPLSLTQSVRGQIAALDKDQPVFNVRTMEQALARSVAARRFSM
                     ILLSVFAALALILAAVGIYGVISYSVAQRTREVGIRMALGAQTTDVLKLVVSDGLKLV
                     VIGVAVGLFGAFMLTRLMSTLLFGVTPTDAVTYTTVALGLVSVALAACYIPARRATKV
                     DPLVALRFE"
BASE COUNT          397 a          633 c          661 g          463 t
ORIGIN      
        1 gtcagcaaac tttctcgcga cgttaggcgt gaagccgatc cgcggccgcg atttcttagc
       61 ggaagacgat cgacaaggag ccgcgcccac ggtcatgctc agttacgcgc tctggcaacg
      121 acgcttcggc ggcgacgaga agatcgtcgg acagcagctc acgctcaatc gtgaacggtt
      181 taccgtgatc ggtgttacac ctgaaaactt cgagtatggc ctcgacgcag atctgacggt
      241 gccgattggt ttgtcgacgg agcgtttcag tgctcgcggg cgagatccgg gaatccagtc
      301 gatcgcgcga atcaagcagg gagtctcaac tgaaaccgca aacgccgagc tcaacacgat
      361 tgccgcacgg ctcgagcaac agtatccgga gagtaacaat aaccgtcgcg tcagaatcga
      421 atccctgcgc gagacgctcg tcggcgacat tcgtccgatg ttgctgacgt tactcggcgc
      481 agtgggtttg gtgttgttga ttgcgtgtgc aaacgtcgcc aaccttctgc tggctcgctc
      541 ggcgcggcgg caaaaagaga tcgcggttcg gaccgcgctc ggcgcaggtc gttcgcgaat
      601 tttgcggcag ctctttaccg agagcgcgat gctcgcgctc ggtgcgggaa tcgtgggatt
      661 gctactcgcg ctcgtgggca cggctttgct ggcgtcatct cttcccgaag gcctgccgtt
      721 cgtgcccgag atccgcaccg atgcttatgt cctgttgttt acttttggcg tgtctttggt
      781 gacaggccta ttgtttgggc tcgcgccggc tctgcaaact tcaaacccgg cgttgaccga
      841 aacgttgaaa gaaggcgaac gcaattcctc tcccggtcac aatcgcaccg gcaagattct
      901 cgtggtcgct gaagtcgcgc tcacactcgt gctgctgatc ggcgcgggtc tgttggtgaa
      961 aagcttctgg cgcctgatgc aggtcgaccc gggtttcaat ccggagaacc tgctcgcgtt
     1021 gcagatttcc gtgaacgcgg gtgctaatga aggtccgcgg gtggctagct tcctggacca
     1081 gttgcaacag cgggtgaaag agttgccggg tgtgcagtcg gtggcgattt cgaatggact
     1141 gccgttcgaa ggagccaact ggcccgcgtt catcatcgag ggacaagcgc cgccggaacc
     1201 cggccgtgag ccgaacggca tcctttacat cacgagcacc ggctatctcg aaacgctcgg
     1261 aattacattg ctgcgcgggc gcggcttttc tgcacacgac acaccgggca cgacgcccgt
     1321 cgtcctgatc gacgaggttt ttgcgcggct ctactttccc aacgaggatc cgttgggcaa
     1381 acgtttgcgg caagctggtc caaactcgcc gagccgtgaa atcatcggca tcgtgcgtca
     1441 tgtcgagcac tcgaacctcg cgggtctcag cgctgagagt ggtgaggttt acacgccgtt
     1501 cagtcagatt ccggtggaaa cattgccgcg ctatgtcagg cgcgtaaatc tcgtcgtgcg
     1561 cactacggtc gagccgttga gtctgacgca atcggtgcgc gggcagatcg cggcgctcga
     1621 caaagaccag ccggtcttca atgtgcgcac gatggagcag gcgttggctc ggtcggttgc
     1681 ggcgcgtcgt ttctcgatga tcctgctgtc ggtgtttgcc gcgttggcct tgattctggc
     1741 ggcggtggga atctacggag tcatctctta ctcagtcgcg caacgcacac gcgaagtcgg
     1801 gattcgcatg gccctcggcg cgcagacgac ggacgtgttg aagttagtcg taagcgacgg
     1861 actcaagctc gtcgtgatcg gtgtcgctgt cggcctgttt ggagccttca tgctgacgcg
     1921 gttgatgagc acactgctct tcggcgtaac accaaccgac gccgtcacct acacaaccgt
     1981 cgccctcggt ctcgtaagcg tcgccctcgc cgcctgctac atccccgccc gccgcgctac
     2041 aaaagtcgac ccactcgtgg cgttgcgctt cgagtagagt tacgcacgcg tccagaacta
     2101 cgccgaaggc gttcgctaat tcgagcccag ggttgcctca accctgggtt aagc
//
LOCUS       DASWTX010000286         2031 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_351575, whole genome shotgun sequence.
ACCESSION   DASWTX010000286 DASWTX010000000
VERSION     DASWTX010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2031)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2031)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2031
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351575"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..801
                     /locus_tag="VGD38_04380"
     CDS             <1..801
                     /locus_tag="VGD38_04380"
                     /inference="COORDINATES: protein motif:HMM:NF015094.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AarF/UbiB family protein"
                     /protein_id="HEY0727283.1"
                     /translation="DRFRYNFRTWRAIRVPKIYWSHTNTRVLTLEFVRGTKVVDLEGL
                     RANGISPVKVNRLLIRTYLKQLLEDGFFHADPHPGNLLVMDSGHLAFFDFGMVGRISP
                     QLQTQMIDAFFHVVARDVHGLGQDIINLNFLKPGVDPETVRPVVESLFTHYLNLKLGD
                     VNFKELTYDLAEVIYEYPFRLPSNFTYIMRALMTLEGIGVVTDPGFSFFETAKPFARE
                     FMLRREGKALRQLILDKLTGRENGESQIAWSRVWKLTKMAARMYLEKQ"
     gene            complement(1000..>2031)
                     /locus_tag="VGD38_04385"
     CDS             complement(1000..>2031)
                     /locus_tag="VGD38_04385"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEY0727284.1"
                     /translation="EEIKADLLTGDPADRRLDEGAHEAYVVPEGYRGIQEAVVGPGRY
                     YVNTLAISPIVIPTTNQTVEWTAGEVANTFNPFEVISKDGFTMQLEVRVVFRVKPEDA
                     PFMVAKIGGIERLIQNVMHPLIDSIFRNQASESSAMAYLQNRHEEQERAEARVRAHLL
                     KYHVDVVNVLICHIHLPEELMKTQTEKILAEQRQNMYNAQREAEEKRIQLEKTKSQAD
                     NQKDLMAATVGVEIAGKRAEQRKAEGEGEAHYIQQTGRAEAEKVRLMGEAQGVAYREQ
                     VNALGPQGVALVETLKVIGEKGVRITPDVMATGGGAEGGGGLGTLLLLNLFRERLNTM
                     PVNGEKVSR"
BASE COUNT          403 a          595 c          546 g          487 t
ORIGIN      
        1 gatcgttttc gttacaactt ccgcacgtgg cgcgccatcc gtgtgccgaa gatctactgg
       61 tcacacacaa acacgcgcgt gctgacgctc gagtttgtgc gcggcacgaa ggtcgtcgat
      121 cttgaaggac tgcgcgcaaa cggcatctcg cccgtcaaag tcaatcgcct gctgattcga
      181 acttatctca agcaactgct tgaagacggt ttctttcacg ccgatccgca tcccggcaac
      241 ctgctcgtga tggacagcgg ccatctcgca ttcttcgact tcggcatggt cggacgcatc
      301 agcccgcagt tgcagacgca gatgatcgac gccttcttcc acgtcgtcgc gcgcgacgta
      361 cacgggttgg gccaggacat catcaacctg aatttcctga agcccggcgt cgatccggaa
      421 acggttcggc ccgtcgtcga gagcctgttc acacactatc tgaacctgaa gctcggcgac
      481 gtgaacttca aggagttgac ttacgacctc gcggaagtga tttacgagta tcccttccgg
      541 ttgccgtcaa acttcactta catcatgcgt gcgctgatga cactcgaagg catcggcgtc
      601 gtgaccgacc ccggattcag tttctttgaa acagcgaagc cgtttgcgcg cgagtttatg
      661 ttgcggcgcg aaggcaaggc tctgcgccag ctcatactcg acaagcttac tggccgcgag
      721 aatggcgaga gtcagattgc ctggtctcgt gtttggaaac tgacgaagat ggcggcgagg
      781 atgtatctgg agaagcagta gtcgcctgct tcgacgccaa aacaaaactc acagcggcta
      841 tgaagagaaa cagcgcaatg agaacaagga cttgtttcaa tgggttgact cctccctggt
      901 gcgcgatggg agccagaagc taattgataa ttttgttttt tctgtcaaga aaacacagat
      961 tacacggcgt gaggtccatg taatctgtgg ttgagttcgt tacctgctga ctttctcccc
     1021 gttaaccggc atcgtgttga gccgctcgcg gaagaggttc aatagcagca acgttccgag
     1081 tccaccgccg ccttcagctc cgccacccgt ggccatcaca tcaggcgtga tgcgcacgcc
     1141 tttctcgccg atcaccttca acgtttcgac cagcgcgacg ccctgcggtc caagcgcgtt
     1201 gacctgttcg cgataagcca cgccctgggc ctcgcccatg agacgcacct tctccgcttc
     1261 ggcccggccg gtttgttgaa tgtaatgggc ctcgccctcg ccttccgctt tgcgctgctc
     1321 ggcgcgtttg ccggcgatct cgacgcccac agtggccgcc atcaaatctt tttgattgtc
     1381 ggcctgtgat tttgtcttct cgagttgaat gcgtttctct tccgcttcgc gttgagcgtt
     1441 gtacatgttc tgccgttgct cggcgagaat cttctcggtt tgcgtcttca tcagttcttc
     1501 cggcagatga atgtggcaga tgagcacgtt cacgacgtca acgtgatact tgagcaggtg
     1561 cgcgcgcacg cgagcttcgg cgcgttcctg ttcttcgtga cggttctgga gataggccat
     1621 cgccgacgac tctgacgcct ggttacggaa gatcgagtcg atcagcggat gcattacgtt
     1681 ttgaatgaga cgttcgatgc cgccaatctt cgcgaccatg aacggcgcat cttcgggctt
     1741 cacacgaaac acgacgcgta cttccagttg catcgtgaaa ccgtctttcg aaatcacttc
     1801 gaatggattg aacgtgttgg caacttcgcc cgccgtccat tccaccgtct ggttcgtggt
     1861 cggaatcacg atcggactga tagccagggt gttgacgtag taacgtcccg ggccaaccac
     1921 tgcctcctga ataccgcgat aaccttcggg aacaacgtag gcttcgtgcg cgccttcatc
     1981 gagccgtcga tcggccgggt cacccgtcaa tagatcggct ttaatctctt c
//
LOCUS       DASWTX010000287         4603 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_197954, whole genome shotgun sequence.
ACCESSION   DASWTX010000287 DASWTX010000000
VERSION     DASWTX010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4603
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197954"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1674
                     /locus_tag="VGD38_04390"
     CDS             <1..1674
                     /locus_tag="VGD38_04390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727285.1"
                     /translation="LATARSVFKRAVLSDRGDVTAVAEIPDTATQHATNTTIVIAPPK
                     RLIDGVRLRAINTSTYQLWREAPGAEQSEASNRYHGDEIKIAWNTPAFYLLGYGAGQL
                     NVDVDFALPYGIEISPGAQRQQKVIRINTDKSTGLNPELLPNKSDTSYECRISYLLKQ
                     ELDGMYIGDGVATERGDAIYLPVARRLALVVMEVLKINPENLSVGSKSSVVQSNSGMF
                     ATPNAIALSNEHVFAMYGDTDLHVFDYSLQLQGKVNVGDVYAVITGIKCQNEKEYFLL
                     GIKKDKTNVQNISLHHLLSYKFINRANSGPQKITAGNIREVSLDAVKGFREQNKMGGY
                     PAWVSSKTVSPIALSTSMQSTQGERVREVAVCIDGGLFTVGSAERMIRVLALESAGRE
                     EEIVFGRDGKTIYCLHSQGDNQGLRVSRVDNQAWKQTHGLTLPRGEGVVDLLTDTRQR
                     TPGTPYKNHRATSMVLSRDEKNLFVSHGQSIFQIDVAKMELRATFKVDLPCRLFHVWF
                     GKPTEASHGIYGTPNSCTLLYAVGANYRGDGLQSRESKTQLYKLGIPDK"
     gene            1716..2612
                     /locus_tag="VGD38_04395"
     CDS             1716..2612
                     /locus_tag="VGD38_04395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727286.1"
                     /translation="MRASLTVLVLLALTFTIADAQTRGMAYNTHAITGPVRSYRTESA
                     TFILKDGNYVEGPRVVREEAMFNTDGNRTDYYIYTKGVLSRRIEMKFDGRTMIECINY
                     NGAGQPYLRIVNTFDDQKRLKETNTYHGDSSLRSKKTFKRNDKGQLIESVEYSADGIL
                     MEQFNYKYEGATVASWERKMYRQDGVLHTTEIYIAPNKKEFLYHRPDGSVENRSVRIG
                     QEIAHYNADGALQKFTTISQPDRLLDELTVKQQEPTKRESQIPDQLDSHGNWTKQTKW
                     STDANGTKPLVVTYRTLTYYEK"
     gene            complement(2593..3681)
                     /locus_tag="VGD38_04400"
     CDS             complement(2593..3681)
                     /locus_tag="VGD38_04400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727287.1"
                     /translation="MNKHPLRRSRVAIVFVVLILCATGVVIEAQQKDPAGTRSGGLSD
                     AFPAPKPEKKVSAVSAMRGRRPGKTVRQQFYQTDLNFPEALPSGGRSLATIGVTIVRG
                     RVATEAEILDRTIATVQGCVKWTDDKCVERKSMVLARILDDTPVFDGDQIQMTIEFLS
                     FLTSSGQQVNRIAYLYVINREQYPDGTWGETKLIFPTLQTYGGDNRVLPGKTVTLPAP
                     NRPWTISRSVSGRPHAFETYTLIVSPQPLTDLSGRKLSLKDRAIKLDEALVDSWIRKW
                     GGKESRGVLENGVGQLITQREIDASGTMERKERGTHDEADDLSLDDPAPQVVFRKIVT
                     PRDKLLVTVKLPFKMTRPANSEPTSRSR"
     gene            complement(3692..>4603)
                     /locus_tag="VGD38_04405"
     CDS             complement(3692..>4603)
                     /locus_tag="VGD38_04405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727288.1"
                     /translation="YSLGVITYELVTGRLPFAAKNQFQMKLLQESGVRVKPGDLNPDL
                     PAAAQDVILKALEYNPADRYQRVRDFGEDLAKALVTDPQPPSPAARASRRGVLVYLLG
                     ALLLASLGVFAAWKFYPRPERSFDFWLQVKMPKDDGTFDEFESTGEEAFKGGSKVYFG
                     IQPAQTGHLYLINEGNGENNTRQWTALFPNPVNNGGSSQLAANKTLAITGMELDKNPG
                     NEIVHIVWSREILPELEALFQDEFNDDDRGVFANAEQVRALVKFFREHPELSGGRTIT
                     NGAQPRINFTGHSDLIVSSVTIKHRNY"
BASE COUNT         1097 a         1272 c         1257 g          977 t
ORIGIN      
        1 ctcgccaccg cgagatcggt tttcaagcga gcggtgctaa gcgatcgagg cgacgtgaca
       61 gcggtcgccg aaatacccga cactgctacg caacacgcaa ccaacaccac catcgtgatc
      121 gcgccgccga agcgacttat cgatggcgtg aggttgcgcg cgatcaatac gagcacctat
      181 caactctggc gcgaagcgcc cggagccgaa caatccgagg cctcgaaccg ttaccacggc
      241 gacgaaataa aaatcgcctg gaacactccg gcgttttacc tgctcggata cggcgcgggt
      301 caattgaacg tcgacgtcga cttcgctctt ccttacggca tcgagatatc gccgggcgcg
      361 cagcgtcaac aaaaagtcat tcgcatcaac accgataaat caaccggact gaatcccgaa
      421 ctgcttccca acaagagcga cacgtcttac gaatgcagga tcagttatct actcaagcag
      481 gaactcgatg gcatgtacat cggcgatggc gtcgctaccg agcgcggtga cgcgatctac
      541 ctgccggtgg cgcgccgcct cgcgctggtc gtgatggagg ttttgaagat caatcccgaa
      601 aacctgtctg tcggcagtaa gagtagcgtc gtgcaaagca actcagggat gtttgcaacg
      661 cctaacgcta tcgcgctctc gaatgaacat gtcttcgcga tgtacggcga caccgatctt
      721 cacgtgttcg attattcgct gcaactgcag ggcaaggtga acgtgggcga tgtttacgcc
      781 gtcatcaccg gcatcaagtg ccagaacgag aaagagtact tcctgctcgg cataaagaag
      841 gacaaaacaa acgttcaaaa catcagtttg catcacctct tgagttacaa attcataaac
      901 agggccaact cagggccgca aaagataacc gcgggcaaca ttcgggaagt atcgttggac
      961 gcggtcaagg gttttcgcga acagaacaag atgggaggct atccggcgtg ggtgtcgtcg
     1021 aagacggtct ctccgattgc gctttcgacg tcgatgcagt ctacgcaggg tgagcgagtc
     1081 agagaagtcg cggtctgtat cgatggtgga ttgtttacag ttgggagcgc agagagaatg
     1141 attcgcgtgc ttgcgctcga gtctgctggg cgtgaagaag agatcgtgtt cggccgagat
     1201 ggcaaaacga tctattgcct ccattcgcaa ggagacaatc aggggttacg cgtgtcgcgc
     1261 gtcgataacc aggcgtggaa acaaacacac ggtctcacgt tgccgcgtgg tgagggcgtc
     1321 gtcgatcttt tgactgacac ccggcagcgt actccgggaa cgccgtacaa gaatcatcgc
     1381 gccaccagca tggtgctgag ccgtgacgaa aagaacttgt tcgtctcgca cgggcagtcc
     1441 atcttccaga tcgacgtagc gaaaatggaa cttcgcgcga cctttaaggt ggatcttccc
     1501 tgccggctct ttcacgtgtg gtttggtaaa ccgacagaag cttcgcatgg catctacggc
     1561 actccaaatt cgtgcacgtt gttgtatgcc gtcggcgcaa actacagggg tgatggtctt
     1621 cagagccgcg agtcgaaaac tcagctttac aagctcggga ttcctgacaa gtaggacgta
     1681 atcgggtcta taatgggcgc cggggaggtg acgaaatgag agcttcatta accgttctgg
     1741 ttcttctcgc actgacattc acgattgccg acgcacagac ccgcggcatg gcctacaaca
     1801 ctcatgcgat cacggggccg gtgcgcagct accgcacaga atccgccacc tttattttga
     1861 aggacggcaa ctacgtcgaa ggaccacgcg tggtgcgcga ggaagccatg ttcaatacgg
     1921 acggcaatcg cactgactat tacatctaca ccaagggagt cctgagccgg cgaatcgaga
     1981 tgaaattcga tggccgcacg atgattgagt gcatcaacta caacggcgcg ggccagccgt
     2041 atttgcgaat cgttaacact tttgacgacc agaaacgact gaaggaaacg aacacttacc
     2101 acggcgacag ttcgttgcgt tcaaagaaga ctttcaaacg aaatgacaaa gggcaattga
     2161 tcgaatcggt ggagtacagt gcggacggaa tcctgatgga gcagttcaac tacaaatacg
     2221 aaggggccac ggtcgcgagt tgggaacgaa aaatgtaccg gcaggatggc gtgctgcaca
     2281 cgaccgagat ctacatcgcg ccgaataaaa aagaatttct ctatcatcgc ccggacggat
     2341 cggttgaaaa tcgaagcgtc cgcatcggtc aggaaatcgc gcactacaac gccgacggcg
     2401 cgctccagaa gttcaccacc atctcccaac ccgaccggct gttggatgag ttaaccgtca
     2461 agcagcagga gccgacgaaa agagaatccc aaatccccga ccagctcgat tcgcacggca
     2521 actggaccaa gcagacgaag tggtccaccg acgccaacgg caccaaaccg ctggtagtca
     2581 cgtatcgcac gctcacctac tacgagaagt aggttccgaa ttagcaggtc tcgtcatctt
     2641 aaaaggcagt ttcacggtca ccaatagctt gtccctcggg gttacgatct tgcgaaacac
     2701 tacttgcggc gccggatcgt ccaggctcaa atcgtcggct tcgtcgtgag ttccacgttc
     2761 tttccgctcc attgtcccgc tcgcatcgat ttcgcgttga gtaattaact gccccacccc
     2821 attttccaga actccgcgcg actccttgcc gccccacttg cgaatccatg aatcgaccaa
     2881 cgcctcgtca agctttatgg cgcggtcttt gagacttagc ttgcgtcctg atagatcggt
     2941 gagcggctga ggcgaaacta tcaaggtgta ggtttcaaac gcatgcggtc tgccggaaac
     3001 gctgcgagag atcgtccagg gacggtttgg cgccggtaac gtaacggtct ttcccggaag
     3061 tacgcgattg tctccaccgt atgtttgcag cgtagggaag atcagctttg tctcgcccca
     3121 agtgccgtcg ggatactgtt cgcgattgat gacgtacagg tacgcgattc gatttacttg
     3181 ttggccggaa ctagtgagga aggagagaaa ctcgatcgtc atctggatct gatcgccgtc
     3241 gaacaccggc gtatcgtcta gtattcgggc cagcaccatg ctctttcgtt cgacgcattt
     3301 gtcatccgtc catttgacgc acccctgaac ggtagcaatc gtacggtcga gaatctcggc
     3361 ttccgtagct acccggccac gcacaatcgt gacgccgatg gttgccaggc tccggccacc
     3421 cgacggcagt gcttcgggaa aatttagatc agtttgatag aactgttgac gaacagtctt
     3481 gccggggcgg cgtccacgca tggcggaaac cgcactgact ttcttttccg gtttaggtgc
     3541 tggaaaagcg tcgctgagac caccgctgcg ggtgcccgcc ggatcctttt gttgggcttc
     3601 aatgacaaca ccagtcgcgc aaagaatcag aactacaaaa acaattgcga cgcgagagcg
     3661 cctgagagga tgtttattca tagatattcc ttcagtagtt gcggtgtttg atcgtcaccg
     3721 aactcactat cagatctgaa tggccggtga agttaatgcg cggctgtgcg ccattcgtta
     3781 tggtccggcc gcccgacaac tccggatgct cgcgaaagaa cttgaccagc gccctcacct
     3841 gttcggcgtt tgcaaacacg ccgcgatcgt catcgttgaa ttcatcctga aacagcgcct
     3901 ccagctcagg cagtatctcc ctggaccaca cgatgtgaac gatttcgttt cccggattct
     3961 tgtcgagctc catgcccgtg atcgccagcg tcttgttggc ggcgagctga gaactcccac
     4021 cgttgttgac cggattcgga aacaatgcgg tccattgccg ggtgttgttc tcgccgtttc
     4081 cctcattgat caggtacagg tgacctgttt gcgcaggttg aataccgaag taaaccttcg
     4141 agccgccctt gaaagcctct tctccagtcg actcaaattc atcaaaggtc ccatcgtcct
     4201 tcggcatctt cacttggagc cagaagtcaa acgatcgttc cggccgagga taaaatttcc
     4261 aggcagcaaa gactcccaag ctcgcgagga gtagcgcgcc aagaaggtag acaagaacac
     4321 ccctgcgcga cgcgcgagcg gcaggagatg gcggctgcgg atcggtgaca agcgctttcg
     4381 caagatcttc tccgaagtct ctgacacgtt gataacgatc ggccgggttg tattcgagcg
     4441 ctttcagaat gacgtcttgc gcagccgctg gcaggtcggg attcaggtcg cccggcttca
     4501 cccgaacgcc gctctcctga agaagtttca tttgaaattg atttttggcc gcgaatggaa
     4561 gccggccggt caccagttca taagtgatga cgccgagcga ata
//
LOCUS       DASWTX010000288         1859 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_48454, whole genome shotgun sequence.
ACCESSION   DASWTX010000288 DASWTX010000000
VERSION     DASWTX010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1859)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1859)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1859
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48454"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..494)
                     /locus_tag="VGD38_04410"
     CDS             complement(<1..494)
                     /locus_tag="VGD38_04410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727289.1"
                     /translation="MHKLYFRVVVIALCLAALVIAPFPSAATPSSSIEDYKAQAVADV
                     QSMAKQSQVMVDMIFSFGELGFQEVETAKYLTGVLEKEGFKIERNVAGIPTAWVATWG
                     SGKPVIALGSDVDCIPQASQKPGVAYHAPLVEGAPGHGEGHNSGVPLNITAAIAVKRQ
                     MQRA"
     gene            complement(464..>1859)
                     /locus_tag="VGD38_04415"
     CDS             complement(464..>1859)
                     /locus_tag="VGD38_04415"
                     /inference="COORDINATES: protein motif:HMM:NF013741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HEY0727290.1"
                     /translation="VTIGISWLIMMEVLNLVIVVLLVLANGFFVASEFALVGVRKSRI
                     EMLAKSGDRRAKRLLPLVNNLNAYISATQLGITLASLALGWIGEPAVAHLLEVPLRGR
                     VSEAVLHTIAFAVAFSIITFLHIVLGELAPKTLALERAERTALAIALPLEIFYKVFRW
                     PIQLLDWAGTRTVRLFGLHPSSGHASIYTEEELRQLIDISHKSGHLEAEEQRLINRVF
                     DFSEAQVREAMVPRTSIAALPVSATLAETKEALHNLGYSRLPVYQDVLDNVVGVLVRR
                     DFEPFLDQSAPPESFDLRKLVHPAHFIPATARLGAALKQMQAKRSHLAFVVDEHGSIE
                     GILTLEDLLEEIVGEINDEYDEEVRAQITKEPDGSYVLSGILTVRDANRQLQLDLPED
                     SGYTTLAGFLMDQAGHVLQPGEVVQYDDLTFKIERMEGRRIRRVRLTSALTAALVLIL
                     LGDATCINFTFEWL"
BASE COUNT          400 a          571 c          516 g          372 t
ORIGIN      
        1 ttggcgcgct gcatctgccg tttcaccgca attgccgcgg tgatattcaa cggcacgccc
       61 gagttgtgac cttcgccgtg tccgggcgcg ccttcaacca gcggagcgtg ataagccaca
      121 ccgggttttt gcgaagcctg cggaatgcaa tcgacgtcgg aaccgagcgc gatcacgggt
      181 ttgcccgagc cccacgtcgc cacccacgcg gtcggaattc ccgcgacgtt gcgttcgatc
      241 ttgaaaccct ctttctcgag aacgcccgtg agatatttcg cagtctcaac ttcctgaaag
      301 ccgagctcgc cgaagctgaa gatcatgtcg accatcactt gcgactgctt cgccatcgac
      361 tgcacgtcag ccacagcctg cgccttgtag tcttcaatcg aagacgaagg cgtggcggcg
      421 ctcggaaatg gcgcgatcac cagcgccgcg aggcacaacg caatcacaac cactcgaaag
      481 taaagtttat gcatgtggca tctcctaaga gaattaaaac gagagctgcg gtaagagccg
      541 acgtcagacg cacgcgacga atgcgccgcc cttccatccg ttcgattttg aatgtcagat
      601 cgtcgtattg gaccacttcg cccggttgca gcacgtgccc ggcctggtcc atcaggaaac
      661 cggcgagcgt ggtatagccg ctatcctcgg gcaggtcaag ctgcaactgc cggttcgcgt
      721 cgcgcaccgt gagaattccg ctcaggacgt agctgccgtc gggctctttc gtgatctgcg
      781 cgcggacctc ttcgtcatac tcgtcgttga tctcgccgac gatctcttca agcagatctt
      841 ccagagtcaa aatgccttcg atgctgccgt gctcgtcgac cacgaaagcg agatgacttc
      901 gtttcgcctg catctgtttc aaagccgcgc cgagccgcgc ggtcgcggga atgaaatgcg
      961 ccgggtgaac gagcttgcgc agatcgaatg actccggcgg cgccgactgg tccaggaaag
     1021 gctcgaagtc acggcgcacc agcacgccga cgacattgtc cagaacgtcc tggtacaccg
     1081 gcaatcgcga gtatcccaaa ttgtgcaacg cctcttttgt ttccgccaac gttgcgctca
     1141 ccggcagtgc ggcgatcgac gtgcgcggca ccatcgcttc gcgcacttgc gcctcggaaa
     1201 aatcaaagac gcgattgatc agccgttgtt cttctgcttc gagatggccg ctcttgtgcg
     1261 agatgtcgat cagttggcgc aactcttctt ccgtgtagat cgacgcgtgt ccgctcgatg
     1321 gatgtagtcc aaacaaacgc acggtccgcg tacccgccca gtcgagcagt tgtatgggcc
     1381 agcgaaagac tttgtagaaa atctccagcg gcaaagcgat cgccagcgct gtccgttcgg
     1441 cgcgttcgag tgcgagcgtc tttggcgcga gctcacccag cacgatgtgc agaaacgtga
     1501 tgatgctgaa ggcgacggca aacgcgatgg tatgaagaac cgcttccgag acacggcctc
     1561 tgagcggaac ttcgagcaga tgcgcgaccg cgggttctcc gatccacccg agggcgagcg
     1621 atgccaaagt gataccgagc tgtgtcgccg agatgtacgc gttcaaattg ttgaccagag
     1681 gcaacaaccg cttggcccgg cgatcgccgc tcttcgccag catttcaatg cgcgacttgc
     1741 gcacgccgac gagcgcaaat tccgacgcga caaagaaccc gtttgcgaga acgagtagaa
     1801 ccacgatcac caaattgagc acttccatca taatcaacca actaattcca atcgtaact
//
LOCUS       DASWTX010000289         2110 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_373086, whole genome shotgun sequence.
ACCESSION   DASWTX010000289 DASWTX010000000
VERSION     DASWTX010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2110
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373086"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            35..1204
                     /gene="dnaJ"
                     /locus_tag="VGD38_04420"
     CDS             35..1204
                     /gene="dnaJ"
                     /locus_tag="VGD38_04420"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF008035.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEY0727291.1"
                     /translation="MAAKQDYYEILGIKRDAKPEEIKKAYRRLARKYHPDVNPGDKAA
                     EERFKLMSEAHDVLSDPKKRSVYDRFGQYSENLADAAARGAGGPTGAGRTSPGFDFTG
                     FDWGSGSAGGGGTGSSFRDIFADLFGGGAAKEKEPPRPQPQRGADIEMPLSLSFEEAI
                     KGLTTNLTVNRSEQCSRCNGAGDIGGPVVVCSTCKGSGQVQRAGGRLRFAQECSDCGG
                     TGRRRSPCSLCHGKGVTPKTETVKVRIPAGVETGSRVRIPGKGHGGRLGAPAGDLHII
                     TNVGEHKYFTRKGDNIYVTVPITVPEAALGAKIEVPTVDGKSQLRIPPGTQSGQKFRL
                     RDRGAPSLRNPGAKGHQFVEVQVTLPKVISEETKELLREYSKLNSTNPRVEMGLE"
     gene            1211..1606
                     /locus_tag="VGD38_04425"
     CDS             1211..1606
                     /locus_tag="VGD38_04425"
                     /inference="COORDINATES: protein motif:HMM:NF024979.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY0727292.1"
                     /translation="MSRKPKTYTISAVADQYGIHPQTLRLYEREGLLKPSRSEGNTRL
                     YTDPDLERLELILSLTRDLGVNLAGVEIILNMREKMDAMQAEFERFFKYLQTHADELT
                     NFEPVPEGSESLVPMTRVGALRRRSSSHS"
     gene            1697..>2110
                     /locus_tag="VGD38_04430"
     CDS             1697..>2110
                     /locus_tag="VGD38_04430"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0727293.1"
                     /translation="MTSRLTFLTICLFVFQLVNAQDLDTVTITGRVTDQNGAVIPGAE
                     IEATLSKRQLTRRSTTDIDGRYRLIQLEPGNYVIRVSANGFAAQQTENIAMLSSQSLE
                     FDVTLIPSTVVAEPVVITTAETPVVDTKRTVTGATL"
BASE COUNT          473 a          569 c          636 g          432 t
ORIGIN      
        1 cggcaattga aaatcgtcaa tcggcaataa ctagatggca gcaaaacagg attactacga
       61 aatactcggc atcaaacgcg acgcgaagcc tgaagagatc aagaaggctt accggcgttt
      121 ggcgcgcaag tatcatccgg acgtgaaccc cggcgataaa gccgccgagg agcgtttcaa
      181 gcttatgtcg gaagcgcacg acgtgctttc cgatccgaag aagcgctccg tttacgatcg
      241 cttcgggcag tattcggaga acctcgcgga cgcagccgcg cgcggcgcgg gtggtccaac
      301 aggcgccgga cgcacgagcc cgggttttga tttcactggt tttgattggg gcagtggttc
      361 ggcgggcggc ggcggaacgg gcagcagttt ccgcgacatc ttcgctgatc tattcggtgg
      421 cggtgcggcg aaggaaaaag aaccgccgcg tccacaaccg cagcgcggcg ccgacattga
      481 aatgccgctg agcctctcgt ttgaagaagc aatcaaagga ctgacgacaa acctaacggt
      541 caatcgttcc gaacagtgtt cgcgttgcaa cggtgcgggc gatatcggtg ggccggtggt
      601 tgtttgttcg acttgtaaag gctcaggcca ggtgcaacgg gcgggcgggc gtttgagatt
      661 tgcgcaggag tgttcggact gcggcggcac cggccgcagg cgttcgcctt gttcgctttg
      721 tcatggcaaa ggcgtgacgc cgaagaccga gacggtgaag gttcgcattc cggcaggcgt
      781 tgaaactggt tcgcgcgtgc gcattccggg caaaggtcat ggcggacgtt taggcgctcc
      841 ggccggcgac ttgcacatca tcacgaacgt cggcgagcac aagtacttca cgcgcaaggg
      901 cgacaacatt tatgtgaccg tgccgatcac tgttccggaa gcagcgttgg gcgcgaagat
      961 cgaagtgccg actgttgatg ggaagtcgca gttacgcatt ccgccgggca cgcaatcggg
     1021 acagaagttt cgcttgcgcg atcgtggtgc gccgtcgttg cgcaatccgg gcgcgaaggg
     1081 ccaccagttt gtggaagtgc aggtgacgtt gccgaaagtg atctcggaag agacgaaaga
     1141 gttgctgcga gagtattcaa agttgaactc gacaaatcct cgcgtcgaga tgggactcga
     1201 gtaaacgcgt atgagtcgga aaccaaagac ctacacgatc agcgcggtgg cggaccagta
     1261 tggcattcat ccgcaaacgc tgcggcttta cgagcgtgag ggattgctga agccttcgcg
     1321 ctctgaaggc aacactcgct tgtacacgga cccggacctc gaacgattgg agttgatact
     1381 ttccctgacg cgcgacctcg gcgtgaacct cgcgggtgtg gagatcatat tgaacatgcg
     1441 cgagaagatg gacgcgatgc aggcggagtt tgagcggttt ttcaaatatc tccaaacgca
     1501 cgctgacgag ctgacgaact tcgaaccggt gccggaagga tcggagtcgt tggtgccgat
     1561 gacacgcgtg ggtgcgttgc ggcggcggtc gtcgtcgcac agctaattgg ttttcaaaaa
     1621 tccgtatttg atctggcttc gtccagcatg gtagattcct ccgcgttttc ctcacatctc
     1681 agcaggagtt tacaaaatga cctcacgtct cacgtttctc acgatctgtc tctttgtttt
     1741 ccaactcgtt aacgcacaag atctcgacac cgtcacaatc accggtcgcg ttacggacca
     1801 gaacggcgca gttattcccg gcgcggaaat tgaggcaacc ctttccaaac gacagcttac
     1861 tcgacggtcc actaccgaca tcgacggccg ttaccgatta atccaactcg aacctggcaa
     1921 ctatgtaatc cgagtctctg ctaacggctt cgctgcacaa cagactgaaa acatcgcaat
     1981 gctttccagt cagagcctgg agtttgatgt cacgctaatt ccttcgacgg tggtcgctga
     2041 gccggtggtg atcaccacag ccgaaacgcc cgtcgtcgat accaagcgaa ccgtaaccgg
     2101 cgcgacgctc
//
LOCUS       DASWTX010000290         2298 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_69525, whole genome shotgun sequence.
ACCESSION   DASWTX010000290 DASWTX010000000
VERSION     DASWTX010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2298
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69525"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1239)
                     /locus_tag="VGD38_04435"
     CDS             complement(<1..1239)
                     /locus_tag="VGD38_04435"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0727294.1"
                     /translation="MLNLLAALIFLIPQGGSIKGKVVADIPDQRRALPGVVVVLTSDR
                     LRDQKLQTITDAEGQYVFNGLLAGEYTVSVEYSGFKKYEQKLSLQIEATVELDALLRP
                     VPLSEQVTVTDNRADPVRTESTTPSTITMQDLRDAPLIDQKFQDALPLLPGVVRGPDG
                     NLNIKGTRPSQSGILVSSLNVTDPVTGAPAIELPLEAVDTVQVHSNPYSSEYGKFTGA
                     VTTIETRSGSNDLRYLVTGVLPRPRWRDGSLFGIGSVTPRIAVGGPIKKDKLFFFQSL
                     EYRFVRTNVESLERLNERQRDIQRESFDSFTRLDYVINENNRLTGSFSIFPQKYDYFN
                     LNTFNPADTTANFHQRGGFLALNEQATFKSGALLQSSFSVKQFDGDIFGNSGAPYQIT
                     PERNFGGWFDRQHRESRRYEL"
     gene            1327..1980
                     /locus_tag="VGD38_04440"
     CDS             1327..1980
                     /locus_tag="VGD38_04440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727295.1"
                     /translation="MKSILCASISLLVLICLALTPLTFADSNGPSANGSFQFALEDGQ
                     PRFLEFHAREQNNGRVVGEMSFTDPNATVVGDPDGPGGESTGASMRARFDCLKITGNR
                     AVMSGVIFESNVLAAMGLRVLLVVEDNSEGVNQPTADKLTWGVYQNPANGWTPKDAER
                     EDDNGASLTWLATDAERPDDVGIPSNQSKVIGCGSFSLASYSFVDIVHGGGNVQVKP"
BASE COUNT          443 a          655 c          712 g          488 t
ORIGIN      
        1 cagttcgtaa cgccggcttt cgcgatgctg gcgatcgaac cagccgccga agttgcgctc
       61 gggcgtgatc tgatacggcg cgccgctgtt gccgaagatg tcgccgtcaa actgtttcac
      121 gctgaagctc gactggagca acgcgccgga tttgaatgtt gcttgttcgt tgagcgcgag
      181 aaacccgccg cgttggtgga agttcgcggt cgtgtctgcg gggttgaacg tgttgagatt
      241 gaagtagtcg tacttctgcg gaaagatcga gaagctgccg gttaggcgat tgttttcgtt
      301 gatgacgtag tcgagacgcg tgaaggagtc gaagctttcg cgctggatgt cgcgttggcg
      361 ttcgtttaga cgttcgagac tctcgacgtt cgtgcgcacg aagcggtatt cgagactctg
      421 aaagaagaac agcttgtctt tcttgattgg gccaccaacg gcgatacgcg gcgtgacgga
      481 accgatgccg aagagcgagc cgtcgcgcca gcgcgggcgc ggcagtacgc cggtcacgag
      541 ataacgcaaa tcgttgctgc cggagcgcgt ttcgatcgtc gtcactgcgc ccgtgaactt
      601 gccgtactcc gatgaatacg ggttcgagtg aacctgcacg gtgtcaaccg cttcgagcgg
      661 caactcgatc gcgggcgcgc cggtaaccgg atcggtcacg ttcaaactcg aaaccagaat
      721 gccgctttgg ctcggccgcg tgcctttgat gttcaggttg ccgtcggggc cgcgcacgac
      781 gccgggcagc agcggcaacg cgtcctgaaa cttctgatcg atcagcggcg cgtcgcgcaa
      841 gtcttgcatc gtgatcgttg aaggcgtggt cgattcagtc ctgacaggat cggcgcgatt
      901 gtcggtgacg gtgacctgtt cgctcagcgg cacgggtcgc aggagcgcgt cgagttcgac
      961 agtcgcttcg atttgcaggc tgagtttctg ttcgtatttc ttgaagccgg aatattcgac
     1021 tgagacggtg tactcgccgg cgagaaggcc gttgaataca tactgtcctt cggcgtctgt
     1081 gatggtctga agcttctggt cgcgcagtcg atcgctcgtc agaaccacga cgacgcccgg
     1141 aagcgcgcgg cgctgatcgg gaatatccgc caccaccttg cccttgatgc tgccgccctg
     1201 gggaattaga aaaatgagtg ctgctaaaag attcaacatg ccgaaattcc tagcacagaa
     1261 ttgacttcac ggccaacacc cgctataagc cgtttaccaa ttattgccca gaaggagtac
     1321 cccccgatga agagtattct ttgtgcttcg atctccctcc tcgtcctgat ctgtcttgct
     1381 ctgacgccct tgaccttcgc cgattcgaat ggaccatccg ctaacggttc gtttcagttt
     1441 gcgctcgaag atggtcagcc ccggtttctc gaatttcacg ctcgcgaaca gaacaacggc
     1501 cgcgttgttg gcgagatgag tttcaccgat ccgaacgcga cggttgtcgg cgatccggat
     1561 ggacccggtg gcgagtctac cggcgcctcg atgcgcgcgc ggttcgattg tctcaagatt
     1621 acaggcaatc gtgcggtgat gagcggagtt attttcgagt cgaacgtgct ggcggcgatg
     1681 ggattgcgcg tgttgctggt ggtggaagac aacagcgaag gcgtgaacca accgaccgcc
     1741 gacaagctga cgtggggcgt ctatcaaaat cccgcgaacg gctggactcc caaggacgcc
     1801 gaacgcgaag acgacaacgg cgccagtctg acctggctcg ccacggacgc cgagcgcccc
     1861 gacgacgtcg gcatcccatc gaaccagagc aaagtgatcg gctgcggaag cttctccctg
     1921 gcgtcgtact ccttcgtcga catcgtccac ggcggcggca acgtccaggt caagccgtag
     1981 cgcttcgtcg cgcgtattct gaaagcactg gctccactgt cagaagcagt cgtaagtgtc
     2041 agaagcagtc gtaagcctgc ttcgagttca agcagctcga gcgactttgc cggaaacccc
     2101 tctttgcttc ggctccgccg ccggatgtga ggcgcacgct acatggtgcc accgcctcgt
     2161 gcgggtctct agccccggct acgccgccgg atgtgaggca aggctgcgcc tcgccggaag
     2221 gttaacaaaa caagctgggg ctatgcccct ggttcgggct tgcccccgag gattgggcca
     2281 taggccgtac caggggca
//
LOCUS       DASWTX010000291         2262 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_197992, whole genome shotgun sequence.
ACCESSION   DASWTX010000291 DASWTX010000000
VERSION     DASWTX010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2262
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197992"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1835
                     /locus_tag="VGD38_04445"
     CDS             <1..1835
                     /locus_tag="VGD38_04445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727296.1"
                     /translation="LEQAIGLGRAIQTSIDRAQGARDAGDAFWEGQQLAAARNFAGQL
                     AALTDLQPDLLANLATALQASGFQRSFTAASIAQFQSSVALQGFPAFLTQAFTELGAD
                     NALQEEIKLAFLNKDSRDIASAGGGQFPASLIDPALTDALRQLATELTLFAQPPASSL
                     NPSLNVTIPGDYTAAGVGLRGGNQGVISLTGVPADAHVVQAFLYWGMLDNGESPSLKN
                     LSINGTPIVGTRIAVGPDTCWGRSNSFAFRADVTPFVTGNGLYTLSGVALGGNVLAQG
                     ASLVVFYEQLGAPLKNIILLDGNVVFPQVLSATSSFSGFVPANPALAKTTFVVGDGQS
                     FAVEEARFTGSAGTNIFVSPFDGGDGPLWDTDTFDVSAAIGLTGNSSSAGISIGGDCL
                     MWVAQVFSVATNPSENVPDVRATAAIVEANEDGTTTVSPTGLFPINEPTLAEKIFLIV
                     RDRVQEDPTISGPDLVRQLVRSLVEAGQISEEEAERIIEEVLQRLIIPVNIDIRPGGS
                     PNNINPGSNGVVPVAVLSSPAFNAASQVDRSTLRFGRTGDEQSLLRTKIEDVNKDGLQ
                     DVVGFFDTNLAAFQQGDTAGVLKGLTNNGQPIMGTDSIRIVPLK"
     gene            1910..>2262
                     /locus_tag="VGD38_04450"
     CDS             1910..>2262
                     /locus_tag="VGD38_04450"
                     /inference="COORDINATES: protein motif:HMM:NF012610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEY0727297.1"
                     /translation="MSEMFSLSPSHPMPLYAQLTRAIQFAIATGRLRVGEQLPTVRQL
                     AVELRVNANTVAKVYAELERSGILETRRGVGTFVSARHLEAGHHEEHEKHLQELVNRF
                     LEEASAMGFSLDDLL"
BASE COUNT          478 a          670 c          665 g          449 t
ORIGIN      
        1 atctcgaaca agcgatcgga ctcggccgcg caatccaaac ttcaatcgat cgcgcgcagg
       61 gagcacgcga cgcgggcgat gctttctggg aaggacagca actcgccgcg gcgcgaaact
      121 tcgccggaca attggccgcg cttaccgatc tgcagcctga cctgcttgcc aatctcgcga
      181 ctgcgcttca ggcgagtggc tttcagcgat cgttcaccgc cgcgagcatc gcgcagtttc
      241 aatcgagcgt cgctcttcag ggcttccctg cgtttcttac gcaggcgttt accgaactcg
      301 gcgctgacaa cgctttgcag gaagagatca agctcgcgtt tttgaataag gacagccgcg
      361 acatcgcttc ggccggcggt ggacagtttc ccgcttcgtt gatcgatccc gcgctgactg
      421 acgcactgcg ccaactggca accgagttaa ctctgttcgc tcaaccaccg gcttcgagcc
      481 tgaatccgtc gctcaacgtg actatccccg gcgattacac cgctgcgggt gtcggtctgc
      541 gtggtggcaa ccagggcgtg atctcgctca ccggcgttcc cgcggacgct cacgtcgtgc
      601 aggctttcct ttactggggc atgttggaca acggcgagag cccgtcgttg aagaacctga
      661 gcatcaacgg aacgcccatc gtcggcacca gaatcgccgt tggtccggat acgtgctggg
      721 gtcgaagtaa cagcttcgcg tttcgcgctg acgtgacgcc gtttgtaacg ggtaacggtt
      781 tgtacacgct gagtggcgtt gcgctgggcg gaaacgttct cgcgcagggc gcctcgctcg
      841 tggtctttta cgagcagttg ggcgcgccgt tgaagaacat aatcctgctg gacgggaacg
      901 tggtctttcc gcaagtgctg agcgccacgt cgtccttcag cggtttcgtg cccgccaatc
      961 ctgccttagc caagacgacg tttgtcgttg gcgatggaca gtcattcgcc gtcgaggagg
     1021 caaggttcac cggcagcgcc ggcaccaaca tcttcgtcag cccgttcgac ggcggcgacg
     1081 gtccgctttg ggacaccgat acgtttgacg tatcggcggc catcggcctc accggcaact
     1141 cttcgtctgc cggaatcagt atcggcggcg actgtttgat gtgggtcgcg caagtattct
     1201 cggtcgcgac caacccgtcg gaaaacgttc ccgacgtgag agcaacggca gccatcgtgg
     1261 aagccaacga agacggcacc acaaccgtca gtcccacggg attattcccg ataaacgaac
     1321 cgactctcgc cgagaagatc tttctgatcg tgcgggatcg cgtacaggaa gatccgacca
     1381 tttccggacc ggatctcgtg cggcaactgg ttcgcagcct ggttgaagcc ggtcaaatct
     1441 cggaggaaga agccgagagg atcatcgagg aggtgctgca acgtctcatc atccccgtga
     1501 acatcgacat caggcccggc ggttcaccaa acaacatcaa cccgggaagc aatggcgtag
     1561 ttccggtcgc ggttctttcc agtccggcat tcaacgccgc ttcacaggtc gaccgcagca
     1621 cgctgaggtt tggccggacc ggcgatgaac agagcctgtt acgaacgaag atcgaagacg
     1681 tgaacaaaga cgggcttcag gatgttgtcg gcttctttga cacaaacctc gccgccttcc
     1741 aacagggaga cacggcaggc gtgctcaaag gactgaccaa caacgggcag ccgattatgg
     1801 gaacagattc gattagaatc gttccgctca aatgagacgg acaaagtaaa aagtcccggc
     1861 tttcgaggtt gaaaccctac ttgtactagc gccgtagtac aacttcgaaa tgtccgagat
     1921 gttctcattg agcccttcgc acccgatgcc gctctacgcg caactgacgc gggcgatcca
     1981 gtttgcgatc gccacggggc ggctgagggt cggggagcaa ctgccgactg tcagacagtt
     2041 ggcagtggag ctgcgcgtca atgccaacac ggtcgccaag gtctacgccg agttggaacg
     2101 ctccggaatc ctcgaaacaa gaagaggcgt gggaacgttt gtcagcgccc gccatctcga
     2161 agcaggtcat cacgaagaac acgaaaagca cttgcaggaa ctggtcaatc ggttccttga
     2221 agaagcaagc gcgatgggtt tctcgctcga cgacttgctc ga
//
LOCUS       DASWTX010000292         4635 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_198001, whole genome shotgun sequence.
ACCESSION   DASWTX010000292 DASWTX010000000
VERSION     DASWTX010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4635
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198001"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            79..654
                     /locus_tag="VGD38_04455"
     CDS             79..654
                     /locus_tag="VGD38_04455"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEY0727298.1"
                     /translation="MMAQHLIDGSVIEACQQGDREAFQLLFESYKDKVFSIAVYSVGG
                     DRSIADDVTQQIFLKLFTAIRQFRGDSEFTTWLYRMVVNECLDERRRRKRWLPWGETV
                     AMKNPVDRKPQEKQFARLEVAEAVQAAIGELKPKFRLPILLKYIEGLSYDEIAQVMGC
                     SKGTVASRLNRGHSQLAKRLAHLNNPAVWGE"
     gene            671..1798
                     /locus_tag="VGD38_04460"
     CDS             671..1798
                     /locus_tag="VGD38_04460"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HEY0727299.1"
                     /translation="MFAKHVTRDISAYCHGELPAEESRRFAEHIIACAKCRREFEEIK
                     LGIKFAEQLPQLSAPEGLWQGIEAQLGEPAREIKRGSWHMRAAAVAAVLFVVVGLGVW
                     AFWDRGLKKDTWQVQQLAGAPRIGSERITKTGRLGKGEWLETDESSRAKIAVGTIGTV
                     EIDENTRVRLVATDPTDHRLELARGKMSAVILAPPRLFFVNTPSAVAADLGCAYTLEV
                     DDHGVGLLRVTAGWVALELKERQSIVPAEAACETRPEVGPGTPYFEDASPAFRDALKR
                     IDFQHDAAVQKDALTVLLNESRPRDTLTLWHLLARVNETDRPRVYEALAKYVPLPPGV
                     TREGVLQLDRTMLERWKNALPFSQNFGGKGKLGPKKLMKLK"
     gene            complement(1803..2435)
                     /locus_tag="VGD38_04465"
     CDS             complement(1803..2435)
                     /locus_tag="VGD38_04465"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEY0727300.1"
                     /translation="MPHSTHVLLIRHGQSEGNAERRFGGHTATPLSPRGRRQANATAH
                     ALKDDELTAIYSSDLARAVETAEPLAKLTGLQINSSTAFRERSVGVMEGLTFEDAAQQ
                     HPEQYAALLRRDFEHVLTGGESYRQLLDRAWQKLDAIIAQNQGGKIAVFSHTGTICIL
                     ALHLMGALDAPELKPVWIMSANCGVTRFELRDDGFVRVLTLNDTRHLSGT"
     gene            complement(2447..3523)
                     /gene="prfA"
                     /locus_tag="VGD38_04470"
     CDS             complement(2447..3523)
                     /gene="prfA"
                     /locus_tag="VGD38_04470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003202249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEY0727301.1"
                     /translation="MLDKLEQIVARFDELTAELSSPELLSNPSAYAKAAKQHRSLEEV
                     VQKYQAWKGLKAELSGARELYDTSDDDEMREMARLELDTLQARLEENERELKLLLVPS
                     DPNDEKNVILEIRAGTGGDEATLFAAEMVRMYSRYAERQRWRFEVLEASESGIGGLKE
                     AIVLIEGNKVYSKLKHESGVHRVQRVPQTEASGRIHTSAVTVAVLPEAEEVDVKIDAK
                     DLRIDTFCSSGPGGQSVNTTYSAVRLTHIPSGVVVSMQDEKSQIKNREKAMRVLRARL
                     QELEEQKQHEAQASERRSMVGSGDRSEKIRTYNFKENRVSDHRIGLTIHQLDLVMEGN
                     LDPFIDALVAHYQAEKLKAEAVAA"
     gene            complement(3533..>4635)
                     /locus_tag="VGD38_04475"
     CDS             complement(3533..>4635)
                     /locus_tag="VGD38_04475"
                     /inference="COORDINATES: protein motif:HMM:NF018798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1385 domain-containing protein"
                     /protein_id="HEY0727302.1"
                     /translation="IVNTAAPLPKWSDKYPLLKLPVLRGGAVLIQSMGLGIKALNYSA
                     NEAFEEVEEAKTKEMKVKLSPAVIEGEGDFAGLTGALPGVIPVPTQKRSRDELKKGTT
                     AAAAGSIIFALIFNILLFVAAPLLLTNALFIAAGWATAPPAATSTATVGTAADGSASA
                     TQPSSSGDERSSIPWFYSAWSSVRTYLHPVRPSVAFNLIDGLIRMTFFLIMIVSFSLL
                     KDIRRVFEYHGAEHKTVFTWEAGLPLTVENARPQPRQHPRCGTSFLMVVMLVAIVLFS
                     IIKFDSLLLNFLIRLALMPVVAGISYEIIRLSAKKESSWIFKLMTRPGVWLQNITTQE
                     PDDQQLEVAIEALKESLKLEPQTAQPQPAPLS"
BASE COUNT          920 a         1281 c         1410 g         1024 t
ORIGIN      
        1 ctattggttt taaatccctt tccccgcttt cttacggaag aaacgccgcc cggctaacgt
       61 ctaacgtttg agttggagat gatggcgcag caccttatcg atggaagcgt gatcgaggcc
      121 tgccagcagg gcgaccgcga agcctttcag ctcctcttcg agtcgtacaa agacaaagtc
      181 ttctcgatcg cggtttattc ggtaggcggc gaccgctcga tcgcggacga cgtcacgcag
      241 cagatctttc tgaagctgtt cactgcgatt cgacagtttc gcggcgattc ggagtttacg
      301 acgtggcttt accgcatggt ggtgaatgag tgtctcgacg agcggcggcg ccgcaaacga
      361 tggcttccct ggggtgagac tgtggcgatg aaaaatccgg tcgatcgaaa accgcaggag
      421 aaacagtttg cgaggctgga agttgctgaa gcagttcagg cggcgattgg cgagctgaag
      481 ccgaagtttc gtttaccgat tttgttgaag tacatcgagg ggttgtctta tgacgagatt
      541 gcgcaggtga tgggttgttc gaaaggcacg gttgcgtcgc gtttgaatcg tggtcacagc
      601 cagttggcga agcggctggc gcatttgaac aacccggcgg tttggggcga gtgatggaga
      661 ggttttatag atgttcgcga agcatgtaac gagggacatt tcagcttact gtcacggcga
      721 gttgccggcg gaagagtcgc gacggtttgc ggagcacatc attgcgtgtg cgaagtgtcg
      781 ccgggagttt gaagagatca agttggggat caagttcgct gagcagttgc cgcaactgag
      841 cgcgcctgaa ggtttgtggc agggaattga agcgcagctt ggtgagccag cgagggagat
      901 caagcgaggg tcgtggcaca tgcgtgccgc ggcggtggca gcagtgttgt ttgtagttgt
      961 gggtttggga gtttgggcgt tttgggaccg gggattaaag aaagatacgt ggcaagtgca
     1021 gcagctagct ggagcgcccc gaattggaag tgaacggatt acaaaaaccg gacggttggg
     1081 caagggtgag tggctggaga cggacgaaag ctcgcgcgcg aagatcgcgg tcggcacgat
     1141 cggcacggtt gagatcgacg aaaacacgcg cgtgcggttg gtggcgacag acccgacgga
     1201 ccatcgcctt gagctcgcgc gcggaaagat gagtgccgtg attttggcgc cgccgagatt
     1261 gttctttgtc aacacgccgt cggcggtggc cgcggatctc ggttgtgcgt acacgctgga
     1321 ggttgacgac cacggcgttg gattgttgcg tgtcactgcg ggttgggtgg cgctggaact
     1381 gaaagaacgc caatcgatcg tgcctgccga agcagcgtgc gaaacacggc cggaagttgg
     1441 accaggcacg ccttacttcg aagacgcttc gcctgcattt cgcgacgccc tgaagcgtat
     1501 tgacttccaa cacgatgcgg ccgtgcagaa agacgccttg accgtgttgc tgaacgaatc
     1561 acgcccgcgc gacacgctga cgctctggca cctgttggcc cgtgttaacg aaaccgatcg
     1621 cccgcgcgtt tatgaagcat tggcgaagta cgttccgttg ccgcccggcg tgacgcgtga
     1681 gggcgtgttg cagctcgatc ggacgatgct cgagcgttgg aagaatgcgc ttccgttcag
     1741 tcagaacttt ggcggcaagg gcaagctggg gcctaagaag ttgatgaaac tcaaatgatc
     1801 cgctacgttc ccgacaggtg gcgcgtgtcg ttgagcgtaa gcacgcggac gaagccgtca
     1861 tcacgcagtt caaatctcgt caccccgcaa tttgcgctca tgatccacac cggctttaac
     1921 tccggagcgt cgagggcgcc catcaggtgc agcgcgagga tgcagatcgt tccggtgtga
     1981 ctgaacaccg cgatcttgcc gccctgattc tgcgcgatga tggcgtcgag cttttgccag
     2041 gcgcgatcga gaagctggcg ataactctcg ccgccggtca agacgtgctc gaagtctcgc
     2101 cgcaatagcg ccgcgtattg ttccgggtgt tgctgcgctg cgtcttcaaa cgtcaaacct
     2161 tccatcacgc ccacactgcg ttcgcgaaaa gcagtcgacg agttgatttg caaccccgtc
     2221 agtttcgcga gcggctccgc agtctcaaca gcgcgcgcga gatcgctcga gtagattgcc
     2281 gtaagctcgt cgtctttgag cgcgtgagcg gtggcgttcg cctggcggcg tccgcgaggc
     2341 gagagcggcg tggctgtgtg gccgccgaaa cggcgttcgg cgtttccttc tgattggccg
     2401 tggcgaatga gaaggacgtg agttgagtgg ggcatcgaac tgtaatctag gcggctaccg
     2461 cctccgcctt caacttctcc gcttgatagt gtgcgacgag cgcgtcgatg aaagggtcga
     2521 ggtttccttc catcacgagg tcgagttggt gaatcgtcag gccgatgcgg tgatcgctga
     2581 cgcggttttc cttgaagtta taggtgcgaa tcttttccga gcgatcgccc gaaccgacca
     2641 tcgagcgtcg ttcgctggcc tgtgcttcgt gttgcttctg ctcttcgagt tcctgtaaac
     2701 gggcccgcaa gacacgcatc gccttttcac gattcttgat ctgcgacttc tcgtcctgca
     2761 tggacacaac aaccccactg ggtatgtgtg ttagccgcac ggcggagtag gtcgtgttga
     2821 ctgactgtcc acctggacca gacgaacaga acgtgtcgat acgcaagtct ttcgcgtcga
     2881 tcttcacgtc gacttcttcg gcttccggca acacggcgac ggtcacggcc gaagtgtgaa
     2941 ttcgtccact cgcttccgtt tgcggcacac gctgcacgcg atgcacgccc gattcgtgtt
     3001 tcaacttcga gtagacctta ttgccttcaa tgagcacgat ggcttctttt agtccgccga
     3061 tgccggactc agacgcttcc aaaacttcaa accgccagcg ctgtctttcc gcgtaacgcg
     3121 agtacatgcg caccatctcg gcggcaaaca acgtcgcttc atcgccgccg gtgccggcgc
     3181 ggatttcgag gatgacgttc ttctcatcgt tcggatcgct cggaaccaat agcagtttga
     3241 gctcgcgctc gttctcttcg agccgcgctt gcaacgtgtc gagttcgagc cgcgccatct
     3301 cgcgcatctc gtcgtcgtcc gaagtgtcat aaagttcgcg cgcgccggac aactccgctt
     3361 tcaagccttt ccacgcctga tacttctgca cgacttcttc caggctgcga tgttgcttcg
     3421 cggccttcgc atacgccgac ggattcgaga gcaactccgg agacgaaagc tccgccgtta
     3481 actcatcgaa gcgggcgaca atttgttcga gtttgtccaa cataagacga cctcacgata
     3541 acggcgccgg ctgcggctgc gctgtttgcg gctccagttt caacgattct ttcaacgctt
     3601 cgatcgcgac ttcgagttgc tgatcgtccg gttcctgcgt ggtgatgttt tgcagccaca
     3661 cgcccggccg cgtcatgagt ttgaaaatcc aactgctttc tttcttcgcc gacaggcgaa
     3721 tgatctcgta cgagatgccg gcgaccacgg gcatcagcgc caggcgaatc aggaagttga
     3781 gcagcagcga atcaaacttg attatcgaga acagcacgat cgccacgagc atcacgacca
     3841 tcaaaaagct cgtgccgcaa cgcggatgct ggcgcggctg cgggcgcgcg ttttcaaccg
     3901 tcaacggcaa tcccgcttcc cacgtgaaca ccgttttgtg ttcggcgccg tgatactcga
     3961 acacacgcct gatgtccttc aacagcgaaa agctcacgat catgatcaaa aagaacgtca
     4021 tgcgaatcag gccgtcgatc aggttgaatg cgactgacgg tctgaccgga tgtaaatacg
     4081 ttcgcacgct cgaccacgcg ctataaaacc atgggattga cgaccgttcg tcgcccgaac
     4141 tcgatggctg tgtggctgag gccgagccgt cagcagctgt gcctacggta gcggtgctcg
     4201 ttgctgcagg cggcgcggtg gcccaaccgg ccgcgatgaa cagcgcgttc gttaacaaca
     4261 acggcgcggc gacaaaaagc aggatgttga agatcagagc gaagatgatc gatccggccg
     4321 ctgcggctgt tgttcctttc ttcagttcgt cgcgcgagcg cttttgcgtc ggcaccggga
     4381 tcacgcccgg aagtgcgcca gtcaaaccgg cgaagtcacc ttcgccttcg atcacagccg
     4441 gcgaaagctt gaccttcatt tctttggtct ttgcttcttc aacctcttca aacgcctcgt
     4501 tggccgagta attgagcgcc ttgattccca agcccatcga ctgaatgagc accgctccgc
     4561 cgcgcagcac cggcagcttg agcaacggat acttgtcgct ccacttcggc agcggcgcgg
     4621 cagtgttgac gatcg
//
LOCUS       DASWTX010000293         1699 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_155030, whole genome shotgun sequence.
ACCESSION   DASWTX010000293 DASWTX010000000
VERSION     DASWTX010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1699
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155030"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..675)
                     /gene="xrtK"
                     /locus_tag="VGD38_04480"
     CDS             complement(<1..675)
                     /gene="xrtK"
                     /locus_tag="VGD38_04480"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR04287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004197 - cysteine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0043687 - post-translational protein
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exosortase K"
                     /protein_id="HEY0727303.1"
                     /translation="MRQKITWSAQLLLVLLCALGLKAFYSTATADDLLWILTPTTVLV
                     ELLSGQQFEFEDYAGYMSSDRGFVIAVPCAGVNFLITAFLMLALRRLWRERFQPVSWF
                     FLPVTVMLAYVATLLANTTRIWFALGRRADAAWVTWLTDNQLHRLEGIVIYFVFLMLL
                     FVLTERLETANPRRFMRASLFPLSIYYAVALVIPLLNGSYKRGTVFWEHSGFVIVLPL
                     LVLLPLV"
     gene            complement(672..>1699)
                     /locus_tag="VGD38_04485"
     CDS             complement(672..>1699)
                     /locus_tag="VGD38_04485"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0727304.1"
                     /translation="SKKLLRELIGKLRPFDLFNVILFAGDSTVLSPHSLEANQQNIAG
                     AIALIEEQRGAGGTELLAAMEQAMSLPRQEGISRSLLLVTDGFVAGEQGVFDHIRNNL
                     NRCNVFAFGIGSSVNRYLIEGVAKAGMAEPFIVTEENEAEGVADKFREYVESPVLADI
                     QVRANGFDVYDVNPVKFPDLFAQRPIILFGKWRGPLTGTIELTGKNSQGLFISRVDVA
                     NAQPDEGNSALRYLWARSRIAELSDYADYKDQEENQKAITELGLKYNLLTRYTSFIAV
                     REVVTNPTGSAQDVNQALPLPLRVSELAVGGGTEVGSEPELMILIVVALIIFMTLVRF
                     KRRRSLV"
BASE COUNT          410 a          532 c          432 g          325 t
ORIGIN      
        1 taccaacggc aacagcacga gcagcggcaa cacgatcacg aaacccgagt gttcccagaa
       61 cacagtgccg cgcttgtaag acccgttgag cagcgggatc acgagcgcaa ccgcatagta
      121 gatcgagagc ggaaacagcg acgcgcgcat aaacctgcgc gggttcgctg tttcaagccg
      181 ctcggtcaac acaaacagca acatcagaaa cacgaaatag atcacgatgc cttcaagccg
      241 gtgcagttgg ttgtctgtca accacgtcac ccacgcagcg tcagctcgcc tccccaatgc
      301 gaaccaaatg cgtgtcgtgt ttgccagcaa agttgctacg tacgccagca tcacggtgac
      361 gggtagaaag aaccaactga ccggctgaaa gcgctcgcgc cataaacgcc tcagcgcgag
      421 cataaggaaa gccgtgatca ggaagttgac tccggcacat ggaacagcga tcacaaaccc
      481 gcgatcgctg ctcatgtaac ccgcgtaatc ctcaaactca aactgctgac cgctcaacaa
      541 ctcgacgagc actgtcgtcg gcgtcagtat ccacaacaga tcatccgccg tcgcggtcga
      601 gtaaaacgcc ttgagcccga gagcgcacag caacaccaac aacaactgcg cgctccaagt
      661 gatcttttgt ctcatacaag gctccgcctc cgcttgaagc ggaccaatgt cataaaaata
      721 atgagcgcca ccacaatgag gatcattaac tctggttcgc tgccgacttc agttccaccg
      781 ccgacagcca gctcgctgac tcgcaacggc agcggcaacg cctggttcac gtcctgcgcc
      841 gaaccggtcg gattcgtgac cacttcacgc accgcgatga acgacgtgta gcgagtcaac
      901 aggttgtact tcaaaccgag ttcggtgatc gctttctggt tctcttcctg gtctttgtaa
      961 tcggcgtaat cagacagctc ggcaattcgc gagcgcgccc acagataacg cagcgcgctg
     1021 ttgccttcgt caggctgcgc gttcgccacg tcaactcgtg aaatgaagag gccctggctg
     1081 ttctttcccg taagctcgat cgttccggtt agtggtccac gccatttgcc gaacagaatg
     1141 atcggccgct gcgcgaacag gtccggaaat ttcaccggat tcacgtcgta gacgtcgaag
     1201 ccgtttgcgc gcacctgaat gtcggccaac accggcgact ccacatactc acggaacttg
     1261 tccgcaacgc cttcggcttc gttttcttca gtaacgatga acggctcggc cattccggcc
     1321 ttcgccacac cttcgatcag gtaacgatta accgaactgc cgatgccaaa cgcgaacacg
     1381 ttgcagcgat tcagattgtt gcggatgtga tcgaacacgc cctgctcgcc cgcaacgaaa
     1441 ccgtcagtca ccaacaacaa actgcgcgag attccttcct gacgcggcaa actcatcgcc
     1501 tgttccatcg cggcgagtag ttcggtgccg ccggcgccgc gctgttcttc gatcagcgcg
     1561 atcgcgccgg cgatgttctg ctgattcgcc tcgagtgaat gtggcgaaag cacggttgaa
     1621 tcaccggcaa acaggatcac gttgaacaga tcgaaaggac gcaacttgcc gatcagttcg
     1681 cgcagcagct tcttcgacg
//
LOCUS       DASWTX010000294         2489 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_329753, whole genome shotgun sequence.
ACCESSION   DASWTX010000294 DASWTX010000000
VERSION     DASWTX010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2489
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329753"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1252)
                     /locus_tag="VGD38_04490"
     CDS             complement(<1..1252)
                     /locus_tag="VGD38_04490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727305.1"
                     /translation="MQSEEHESLERQSFLELTRSIAGLPLDQAAAILESSASIAAISL
                     RAGIEFLRAAPAAAHVLQPAELRAWGEMGRRLAMSDYETAISFFVAGVEELQSVPQEL
                     LPAIFTLCTRQMTLSTTIGRETLNSAPQLVASIGDTAPAVLEVATEIARRSAKHSAEF
                     LRASPHVTEVLRSFADAEVTSSALALAGSFAARAGGIAADAWNAIPEALAELSPSDAK
                     RLLTSANGFLERGGGAALHILLAGGEILRRAPEIFDEWIELLWIVAAHGNASLVAFVR
                     SSPGFLRLLAADMNRGDAIELSHRVLALTKEIGAIDAEAALAAFRSSSRALRTVSIEQ
                     FEAWAKRGLSSGRSDARARRSYFSLETRGSYEALHSGSAGLALDSVQHLLRLYVEALT
                     GREVEVAPLAAVPDEARIGDGRTIH"
     gene            complement(1256..2062)
                     /locus_tag="VGD38_04495"
     CDS             complement(1256..2062)
                     /locus_tag="VGD38_04495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018286761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbbQ/NirQ/NorQ/GpvN family protein"
                     /protein_id="HEY0727306.1"
                     /translation="MPESALQDYRVATEPYYLPVGREVELFEAAHSARLPVILKGPTG
                     CGKTRFVEHMAWRLERPLITVACHEDLSSTDLVGRFLLEGEETIWHDGPLTSAVRNGA
                     ICYLDEVVEARKDTVVIIHPLTDHRRRLPIEKLGTIVSAPDDFMLVVSYNPGYQSILK
                     DMKQSTRQRFVAIEFDYPPPEMEAEIVAREGGVDEGTARDLVLIGQKVRNLRGHGLEE
                     GVSTRLLIYAAQLIALGIPPVDAAEVAMSSPITDDRELQRSIREIITTVI"
     gene            2183..>2489
                     /locus_tag="VGD38_04500"
     CDS             2183..>2489
                     /locus_tag="VGD38_04500"
                     /inference="COORDINATES: protein motif:HMM:NF015042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HEY0727307.1"
                     /translation="MKIAVAMSGGVDSSAAAAILKEQGHELVGFTMQLWDQRRGINVD
                     ENGDPLPSRCCSLDDVYDARRVAEELDFPFYVLNLERDFERDVVQPFVASYLSGETPI
                     "
BASE COUNT          545 a          796 c          687 g          461 t
ORIGIN      
        1 gatgaatcgt gcgtccatcg ccgatacgcg cctcatccgg cacggcagcc aacggcgcca
       61 cttcaacctc gcgtcccgtc aacgcctcga cgtacaaccg aagtaaatgc tgcactgaat
      121 ccagcgcaag tcccgcgctg ccgctgtgca aagcttcata actgccgcgc gtctcgagcg
      181 agaaataact gcgtctcgca cgcgcatccg agcggcccga cgaaagcccg cgcttcgccc
      241 acgcctcaaa ctgctcgatc gaaaccgtcc gcaacgcgcg cgaactcgac cgaaaagccg
      301 ccaacgccgc ttccgcatcg atcgcgccaa tctctttcgt caacgcaagc acacgatgcg
      361 agagttcgat cgcgtcacca cgattcatgt ccgcggcaag caaacgcaaa aaccccggac
      421 tgctccgcac aaacgcaacg agactcgcat ttccgtgcgc agccacaatc caaagcaatt
      481 cgatccactc gtcgaaaatc tcaggcgcac gtcgcaggat ctcaccgccc gccagcagga
      541 tgtgtaacgc cgctccgccg ccgcgttcga gaaacccatt cgcgctcgtg agcagtcgtt
      601 tcgcgtccga gggcgagagc tccgcaagcg cttcgggtat cgcgttccac gcatcggcgg
      661 cgattccacc cgcgcgcgcg gcaaacgatc cggcgagtgc gagcgcggaa gacgtaacct
      721 ccgcatccgc aaacgatctc aagacttcag tgacgtgcgg actcgccctc agaaactctg
      781 cgctgtgctt tgccgaacgc cgcgcgatct ctgtcgctac ttccaacacc gcgggcgcag
      841 tgtcgccaat actcgccact aactgtggcg ccgagttgag tgtttctctc ccgatcgtcg
      901 tcgagagagt catctgacgc gtacacaacg tgaagatcgc cggcagtaat tcctgcggca
      961 cgctttgcaa ctcttcaaca cccgcgacaa aaaacgaaat cgcggtctcg taatcgctca
     1021 tcgcgagacg ccggcccatc tcaccccacg cacgcaactc cgccggctgc agcacgtgcg
     1081 cagccgcagg cgccgcacgc aaaaactcaa ttccggcgcg cagcgagatc gccgcaatcg
     1141 acgcactcga ttccagaatt gcagccgcct ggtccaacgg caaacccgca atgctgcgag
     1201 tcagttcgag aaacgattgt cgttcaagtg attcgtgttc ttcggattgc acaacttaaa
     1261 tgacggtggt gatgatctcg cgaatgctgc gttgcagttc gcggtcatcc gtgatcggtg
     1321 aagacatcgc cacctcagca gcgtcgacag gaggaatgcc cagcgcaatc aactgcgccg
     1381 cgtaaatcaa aagccgcgtc gaaactcctt cttccaaacc gtgcccgcgc aggttgcgca
     1441 ccttctgccc aatcaaaacc agatcgcgcg cggtgccttc gtcgacgccg ccctcacgcg
     1501 cgacgatctc ggcttccatc tccggcggcg gataatcaaa ctcgatcgcc acgaagcgtt
     1561 gccgcgtcga ctgcttcatg tctttgagta tcgattggta gcccgggttg taagaaacga
     1621 cgagcatgaa atcgtcgggc gcgctgacga tcgtgccgag tttttcaatc ggcagacgcc
     1681 ggcggtgatc ggtcagcggg tgaatgatca cgaccgtgtc cttgcgcgct tcgaccactt
     1741 cgtcgagata acagatcgcg ccgttgcgga cagcggaagt gagcgggccg tcgtgccaga
     1801 tcgtctcctc gccttcgagc aggaaacgtc cgaccagatc ggttgacgac aggtcttcgt
     1861 ggcaggcgac ggtgatcagc gggcgctcga gacgccacgc catgtgttcg acaaaacgag
     1921 ttttgccgca gccggtcggg cctttgagaa tcacgggcag gcgcgccgaa tgggcggcct
     1981 cgaaaagctc gacttcccgg ccaaccggga ggtaataagg ctcggtagcg acgcgataat
     2041 cttgtagtgc gctttcaggc attttggttg aagtgcgtaa attcgggtaa tcttaacatt
     2101 cggtcgcgaa gcggccaaaa tccccttcct tgctgcgtgt cgctagcgtt actcagaaag
     2161 gacagggatt agaaagcaag aaatgaaaat agcagtagca atgagtggcg gcgtggattc
     2221 ttccgcagcc gcggcaatcc tgaaagagca gggccacgaa ctggtcggct ttacgatgca
     2281 actctgggat cagcgccggg gcatcaacgt cgatgagaac ggcgatccgc tgccgtcgcg
     2341 ttgctgttca ctcgacgacg tttacgacgc gcgtcgcgtc gccgaagaac tcgattttcc
     2401 attctacgta ttgaacctgg aacgcgactt cgagcgcgac gtagtgcaac catttgtcgc
     2461 cagctatctg agcggtgaga cgccgatcc
//
LOCUS       DASWTX010000295         3698 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_263515, whole genome shotgun sequence.
ACCESSION   DASWTX010000295 DASWTX010000000
VERSION     DASWTX010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3698)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3698)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3698
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263515"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            106..1608
                     /locus_tag="VGD38_04505"
     CDS             106..1608
                     /locus_tag="VGD38_04505"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047420 - N-acyl-D-amino-acid deacylase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacylase"
                     /protein_id="HEY0727308.1"
                     /translation="MLSVTATLFTTQAANDTIAIVGATLIDGTGRAPLADSVVVLKGD
                     SIVSAGKRAEVSVPADARLIEARGLVVAPGFIDAHNHSDRGFSNDPSAVSQVSQGITT
                     VVVGQDGGSPFPVGEFLQDLDKNAIALNVLTFVGHATVRSRVMGEDTNRLATPDEIEK
                     MRQLVEQAMREGAMGLSTGLEYETGKPASTAEVVTLARAAGAHGGIYISHIRDEADKS
                     FEALAEAIQIGREARIPVQISHIKLGTLKVWGKAKQVVDLINKARSRGQDVTADCYPY
                     DAWSSTIRVLIPSGRHDDPVDVARGLADVGGPANITIVNCRSHPEYEFKTMAEISKAE
                     KISPVELYMKIVRDGGAGVVCHSMKDADIQMFYRQPWVMVSSDGGIGSRHPRGAGSYP
                     RVLGRFVRELRWLSLQEAIRKMTSFPATRFKLHDRGLIRAGFKADVVLFDPVRVIDRA
                     TFKDPQLVAEGVKRVFVNGVEVWSDGKATGERPGQALRLRKPQSDQKSID"
     gene            complement(1585..1968)
                     /locus_tag="VGD38_04510"
     CDS             complement(1585..1968)
                     /locus_tag="VGD38_04510"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0727309.1"
                     /translation="MGERNGKDLKVLLVEDFEDTRLVLRLALEDHGFIVFEAENGQKA
                     VESANRENPDVILMDLTMPLMDGFAAAKVIRQNDQFKNVPIIAITAHQETDFRSDAKA
                     SGFDAYVTKPIDVNWLKELIDGLLI"
     gene            2110..2967
                     /locus_tag="VGD38_04515"
     CDS             2110..2967
                     /locus_tag="VGD38_04515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727310.1"
                     /translation="MKRLIILILLVALAAVAGVVVRSSSSKGGTVAEIRELVSHQAAG
                     DVREEIRQTYELAPGARLEVGGINGSVTIETSDTKTAEVYIERTASSQEAMDRRKIEI
                     QADANRLRINGETTDHNFFAKLFGSKASERVKLKVPRQISLQAKGVNGAFVVEDLDGS
                     IEVGGINGKVQIANAAGSATLKGINGSVALGMDRIGAEGVEFSGINGNIELQLGADVN
                     ADFDAKGMNGRVVADIPNVFLDKGKHRYSGRIGSGGTGITAKGINGNIRLTRAPAVPA
                     APTTDLTRK"
     gene            complement(2985..>3698)
                     /locus_tag="VGD38_04520"
     CDS             complement(2985..>3698)
                     /locus_tag="VGD38_04520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727311.1"
                     /translation="GKLIQDIERPSREKGLNRVAWNLRLGGPEVRRPPTPEQLAFGGG
                     PRGPQVLPGTYTVKLTVGDKVYEERVEVKLDPGIKTSIAELQQTLDMQVKLRDMQSTM
                     NMSLRFLDSLKEQLKQAQTTMKTLSKEPDKDMMKALEDYIKELDTMQDKLAARNEGLG
                     FPGKDQVADNIGSLFFALDSNFGPTLGQRQFFDEIQPAYRGRMEEVNKFLRDTLPQWN
                     EKLRGWNAPTLTTRKPFEL"
BASE COUNT          767 a          978 c         1127 g          826 t
ORIGIN      
        1 aagaagcccg agtatccgga tcgcaagaag ctcgaggaat acatttcggc gaacaagaag
       61 tagggatttg acgatttgaa aaaactgatc ttttttctag tgctcttgct tagtgtaacc
      121 gcgactttgt tcactacgca ggctgctaac gacaccatcg cgatcgttgg tgcaacctta
      181 atcgacggga ctggacgagc gccactcgct gattcagtgg tggtattaaa aggtgattcg
      241 attgtttccg ccggaaagcg cgcggaggtg tccgtgccgg cggacgcgcg actcatcgaa
      301 gcacgcggtc tggttgtcgc tcctggtttc atcgacgcgc acaaccattc cgatcgtggt
      361 ttcagcaacg atccttccgc cgtatcgcaa gtctcacaag gcatcacgac cgtcgtcgtg
      421 ggccaggatg gcggctcgcc gtttcccgtc ggtgagttcc tgcaagatct cgacaagaat
      481 gcgatcgcgt tgaacgtgct cacgtttgtg ggccatgcga cggtgaggtc gcgcgtgatg
      541 ggcgaggaca cgaatcgact cgccacgccc gacgagatcg aaaagatgcg gcagctcgtc
      601 gaacaggcga tgcgcgaagg cgcgatgggt ctctcgaccg ggctcgagta cgaaaccggc
      661 aaacctgctt cgactgcgga agtcgtcacg ctcgcgcgcg ccgctggtgc gcatggcggc
      721 atttacatca gtcacattcg cgacgaagca gacaagagtt ttgaagcgct tgccgaagcg
      781 attcagatcg gcagggaagc gcgaattccg gttcagattt cgcacatcaa gctgggcaca
      841 ttgaaggttt ggggtaaagc gaaacaggtt gtcgacttga tcaataaagc gcgttcgcgt
      901 ggtcaggacg tgactgcgga ttgttatccg tacgacgcgt ggagctcgac gatcagggtg
      961 ttgattccga gtgggcgtca tgacgatccg gtcgacgtgg cgcgtggttt ggccgacgtt
     1021 ggtggaccag cgaacatcac gatcgtcaat tgccgctcgc atccggaata cgagttcaag
     1081 acgatggccg agatcagtaa agcggaaaag atcagtccgg ttgagcttta catgaagatc
     1141 gtgcgcgatg gcggcgccgg cgtggtttgt cactcgatga aagacgcgga catacagatg
     1201 ttctaccggc agccgtgggt gatggtcagc agtgatggcg gcattggttc gcgacatccg
     1261 cgcggcgcgg gttcgtatcc gcgtgtgttg ggccgttttg tgcgtgagtt gcgctggttg
     1321 agtttgcagg aagcgatacg caagatgacg tcttttccgg cgacgcgttt caagctacac
     1381 gatcgtggat tgattcgcgc gggctttaag gctgacgtgg tgctgttcga tccggtgcgc
     1441 gtgatcgatc gcgcgacgtt caaagatccg cagttggttg cggaaggtgt gaagcgcgtg
     1501 tttgtgaatg gagtcgaagt ttggagcgac ggaaaagcta ccggtgaacg tccgggccaa
     1561 gcgctgcgtc tgcgcaaacc gcaatcagat caaaagtcca tcgattagtt ctttgagcca
     1621 gttgacgtcg atcggtttag tgacgtaagc gtcgaaaccg gaggcttttg cgtcggaacg
     1681 aaagtcggtt tcctggtgcg ccgtgatcgc gattatggga acgtttttga actggtcgtt
     1741 ttggcgaatc acctttgccg cagcgaagcc gtccatcagc ggcatcgtga ggtccatgag
     1801 aatcacgtca gggttctcgc ggttcgcgct ttcgacggcc ttctgcccgt tctcagcttc
     1861 gaacacgatg aaaccgtggt cttccagcgc cagtcgcaga acgagtcgag tgtcttcgaa
     1921 gtcttcgacc agcagtacct tcaggtcttt tccgttacgt tcgcccatag ttcgatagat
     1981 agatgtgagg ggttggactc tatgctccgg ctgacttggt gtcaagcacc aaaatccgaa
     2041 acatatcttt ggagatcgtc gttaaagacc ccgacagtcc atttttccag caatttctga
     2101 ggcaggaata tgaaacgctt aataattttg attttgctcg tcgcgcttgc ggctgtagcg
     2161 ggtgtcgtcg ttcgctcgtc ttcaagcaag ggcggcacgg tggcggagat tcgcgagctc
     2221 gtgtcgcatc aggctgcggg cgatgttcgt gaagagatac gacagactta cgaactcgca
     2281 cccggcgctc gactcgaggt gggtggcatc aacggctcgg tcacgatcga gacttccgac
     2341 acgaagaccg cagaggttta catcgagcgc actgcgtcga gccaggaagc gatggaccgg
     2401 cgcaagattg agattcaggc ggacgcgaac cggctgcgca tcaacggcga aacgacggac
     2461 cataactttt tcgcgaagct gtttggctcg aaagcttcgg agcgtgtgaa gctgaaagtg
     2521 ccgcgtcaga tttcgctcca ggcgaagggc gtgaacggtg ctttcgtggt ggaagatctt
     2581 gatgggtcga tcgaagtcgg cggcatcaat ggaaaagttc agatcgcgaa tgctgccggt
     2641 agcgcgacgt tgaaaggcat caacggaagc gtcgcgctgg gcatggaccg gatcggcgca
     2701 gagggcgtcg agttcagcgg catcaacggc aacatcgaac tgcagttggg cgcggacgtg
     2761 aacgcggatt ttgatgcgaa aggcatgaac ggccgcgtgg ttgcggacat acctaacgtc
     2821 ttcctcgaca agggcaagca ccgctactcg gggcgcatcg gcagcggcgg caccggcatc
     2881 acggcgaagg gaatcaacgg caacatccgc ctgacccgcg cccctgcagt ccccgcggca
     2941 ccaaccacgg atctaacacg gaaataaatc cgggtaatct gtggttaaag ctcgaacggt
     3001 ttgcgggtgg ttaacgttgg cgcgttccac ccgcgaagtt tttcattcca ctgcggcagc
     3061 gtgtcgcgca ggaatttgtt gacctcttcc atccgcccgc gatacgcggg ttgaatctcg
     3121 tcgaagaact ggcgctgccc gagtgttggt ccaaagttcg aatcgagggc aaagaagagg
     3181 cttccgatgt tgtccgccac ctgatccttg cccggaaaac caagcccttc gttacgcgcc
     3241 gcgagtttgt cctgcatcgt gtccaactct ttgatgtagt cttcgagcgc tttcatcatg
     3301 tccttgtcgg gctctttgct gagcgtcttc atcgttgttt gcgcctgctt gagctgctcc
     3361 ttcaggctgt cgagaaaacg caacgacatg ttcatcgtcg actgcatgtc gcgcagcttc
     3421 acctgcatgt cgagcgtttg ctgaagctcg gcgattgacg tcttgatgcc cggatcgagt
     3481 ttcacttcca cacgctcttc atacacctta tcgcccaccg tgagtttcac ggtgtaagtt
     3541 cccggcaaca cctgtggccc acgcggtcca ccgccaaacg cgagctgctc cggcgttggc
     3601 ggacgacgca cttccgggcc acccaaacgc aggttccacg cgacgcgatt caagcctttc
     3661 tcacgcgaag gccgctcgat gtcctgaatc agttttcc
//
LOCUS       DASWTX010000296         4633 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_48545, whole genome shotgun sequence.
ACCESSION   DASWTX010000296 DASWTX010000000
VERSION     DASWTX010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4633
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48545"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..504
                     /locus_tag="VGD38_04525"
     CDS             <1..504
                     /locus_tag="VGD38_04525"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEY0727312.1"
                     /translation="HEGKKVKFYDDLMKDKIVLINFMYVRCEGTCPGTTANLVKVQQL
                     LGDRVGKDIFMYSITLKPEEDTPKDLAAYAKAYKVKPGWQFLTGSPKDIELLRQKLGF
                     IDRDPVRDADKSNHIGMLRWGNEPHTLWAGCPASLAPSKIVKEIELIDWPTAEEARER
                     QTRGGKR"
     gene            501..1394
                     /locus_tag="VGD38_04530"
     CDS             501..1394
                     /locus_tag="VGD38_04530"
                     /inference="COORDINATES: protein motif:HMM:TIGR02276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727313.1"
                     /translation="MMFYRSITKVLVGALLGMTAVAVQAQTTAFPVGLGPEGVATDGS
                     SVFVANQFSNTVTKLNASDGAVVGTYTVGHRPVALAFDGAFVWVANYLSNNVMKLDSS
                     GAVAGTYAVGDGPGGLLVSNGNVWVANRNAGTVTKLRAADGVTLGTYEVGERPISMAT
                     DGEHIYVTNNNSDTVTKLRESNGVVVATFPVGDGPFGIAFNGGSLWIANFGSSNVMKL
                     SVTGVLSGTYKVGDGPLAAVCSDGVVYVVNNGGDSVTKLSATDGTNLGSISVGRSPIG
                     IAVSGSSVWVTNSGSNTVTKR"
     gene            complement(1450..2367)
                     /locus_tag="VGD38_04535"
     CDS             complement(1450..2367)
                     /locus_tag="VGD38_04535"
                     /inference="COORDINATES: protein motif:HMM:NF019339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0727314.1"
                     /translation="MCKLQPLSLILFCLFATTASAQTDCAARAQQRPQQFSAETRREL
                     EAKLSEARDRYEKEPKSVEALIWYGRRTTYLAHYKDAIFTFTEGIEQFPNDARLYRHR
                     GHRYITLRCFDAAIADLEKAAKLIKGKPDEIEPDGLPNARNIPTSTLQSNIWYHLGLA
                     YYLKGDFRRALGAYREAEKVLNNPDMLVATTHWLYMTLRRLGRKDEANKALAKVKDDL
                     DIIENADYYKLIRIYKGQLKAEDVLAEISKNADSLSNATMGYGLGNWFLYNDQRAQAE
                     KVFRQVTSSSQWSSFGYIAAEAELNRARP"
     gene            2456..3022
                     /locus_tag="VGD38_04540"
     CDS             2456..3022
                     /locus_tag="VGD38_04540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727315.1"
                     /translation="MPKQLPQPVKNLLNWITTKLAKLSVYETLSLLISLLGSLSLVFI
                     YYQVVQTSTSLEASSKAAIGDAYANIGTFTLDLDKVFIEKPKLRPYFYQGWDISEDHE
                     DYHAVMGIAEMQLDFFDATLTQLEIRPRENDLEMAAEEKLWEKYFSKSFAKSRVLCKR
                     YADDEDWYRENLKKYASEPCKKWGFDIE"
     gene            3068..4453
                     /locus_tag="VGD38_04545"
     CDS             3068..4453
                     /locus_tag="VGD38_04545"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY0727316.1"
                     /translation="MKKLGRRDFLTRAGLAALGTPLLYTTSFALTAPSCIVIGAGLAG
                     LAAAYALKKAGWTVTVIEARNRIGGRVFSFSFADNPNLICELGAEWVGVGHERVRALC
                     REFKIELQDHRFDASLMRDGVIKTSGNWNFSPEANKALERFEKQYRAYSRLDRVKLDQ
                     HDWWTWLQRIGFPEDDLRLRDLMDSTDFGESIRHVSAYLAAAERFESGTENNMDFKMT
                     GGNSRLVKELALRVGPENIKTGMEVEEIRQRAGSVTVKTAAGTFSADSCICTVPAHVL
                     RKIRFEPPLPAAQLAAVDELQYSRIVKNSILFSERFWGSEDFSLVTDVTSHYYFHSSK
                     NQPGMEGILCSYAVGDKADVLAAQSDGRRMEIITRDLRPVNERAPQLARAIASYAWQR
                     DRYTHGAYALYRPRQWFGLRPLLQRPHHKVLFAGEHLADWQGFMEGAIETGEEAARAL
                     VNKRRSVRRVA"
BASE COUNT         1041 a         1159 c         1355 g         1078 t
ORIGIN      
        1 cacgaaggca agaaggtcaa gttttacgac gatctgatga aagacaagat cgttctgatc
       61 aatttcatgt acgtgaggtg tgaaggcact tgtccgggta cgacggcgaa cctcgtcaag
      121 gtgcagcaac tgctcggcga tcgtgtcggc aaggacatct tcatgtactc gatcacgctc
      181 aagccggaag aggacacgcc gaaggacctc gctgcgtatg cgaaagctta caaggtgaag
      241 cccggttggc agtttctcac cgggagtccg aaagacatcg agctgttgcg gcagaagctt
      301 gggtttatcg atcgcgatcc ggtgcgcgac gcggacaagt cgaatcacat cggcatgctg
      361 cgctggggaa acgagccgca cacgttgtgg gccggatgtc ccgcgtcgct cgcgcccagc
      421 aagatcgtga aagagatcga gctgatcgac tggccgacgg cggaagaggc tcgcgagaga
      481 cagacgagag gagggaagag atgatgtttt atcgatcgat tactaaggtc ttagtgggcg
      541 cgcttctggg tatgacggcc gttgccgtgc aggcgcagac cacggcgttt ccggttggtc
      601 tcgggccgga gggtgttgcc accgatggct cgagtgtctt tgtggcgaat cagttcagca
      661 acacggtcac aaagctgaac gcgagcgacg gcgccgtggt tggcacgtac acggtgggcc
      721 atcggcccgt tgcgctcgca ttcgacggcg cgtttgtgtg ggtcgcgaat tatctcagca
      781 acaacgtgat gaagctcgat tcgtctggtg cggtggctgg cacgtatgca gtcggcgacg
      841 gaccaggcgg actgctggtt agcaatggca acgtctgggt tgcgaaccgc aacgcgggta
      901 cggtcactaa actgcgtgcg gcggatgggg tgacactcgg cacgtacgaa gtcggcgagc
      961 gtccgatcag catggcgacg gatggcgagc acatctacgt cacgaacaac aacagcgaca
     1021 cggtgacgaa gctgcgcgag tcgaacggcg ttgtggtggc aacgtttccg gttggcgatg
     1081 gaccgttcgg gatcgctttc aacggcggca gcttgtggat cgcaaacttc ggcagcagca
     1141 atgtgatgaa gttgagtgtc actggtgttt tgagcggcac ttacaaagtc ggcgatggtc
     1201 cactcgcggc tgtttgcagc gatggtgtgg tttacgttgt gaataacggc ggcgacagcg
     1261 tgacaaagct gagcgccacg gatggcacga atctcggatc gatctcggtg ggacgtagtc
     1321 cgatcgggat tgcggtgtct ggttcgagtg tttgggtgac gaactcgggg agcaataccg
     1381 taacgaagcg ttaagttcga gcaaggaagc agggcgcggg cgtttttcgt ctgcgccctg
     1441 ctgggtggtt tacggtcgtg cgcggtttag ttcagcctcg gccgcgatgt aaccgaaact
     1501 ggaccactga ctgctgctgg tgacctgccg aaacactttt tctgcttgcg cgcgttggtc
     1561 gttgtagaga aaccagttcc ccagaccata acccatcgtc gcgttgctca ggctgtcggc
     1621 gttcttgctg atctcggcaa gaacgtcttc ggctttgagc tgtcctttat aaatgcggat
     1681 gagcttgtag taatcggcgt tctcgatgat gtcgagatcg tctttgacct tcgccaacgc
     1741 tttgttcgct tcgtctttac gtcctaaacg gcgcagggtc atgtagagcc agtgcgtcgt
     1801 tgcgacgagc atgtccgggt tgttcaagac tttttccgcc tcgcgatacg cgccgagcgc
     1861 gcggcgaaag tcgcctttga gatagtaggc caagccgagg tgataccaga tgtttgattg
     1921 cagcgtgctg gtcggaatgt tacgcgcgtt tggtaaacca tccggttcga tctcatccgg
     1981 cttgcctttg atcagcttcg ccgccttttc caaatccgcg atcgccgcat cgaaacagcg
     2041 aagcgtgatg taacgatggc cgcgatgccg gtacagccgc gcatcgttcg gaaactgctc
     2101 gatgccttca gtaaaagtaa aaatcgcgtc tttgtaatgc gcgaggtagg tggtgcgccg
     2161 gccataccag atgagcgcct cgacagactt aggctccttc tcgtatctgt cgcgcgcctc
     2221 actgagcttc gcctcgagct cacgccgcgt ctcggctgag aactgttgcg gacgctgctg
     2281 cgccctcgcc gcgcaatccg tttgcgccga tgcagtggtg gcgaaaagac agaacagaat
     2341 caaagaaaga ggttggagtt tacacatagg cctgtcatta taaacagttc gttatctcaa
     2401 actcactctc atgatcatcg atccatgatg gtcctctact gaaggagctg atttcatgcc
     2461 gaaacaacta cctcaacctg tgaagaatct actcaactgg atcacaacca aactggcgaa
     2521 gctcagtgtt tatgaaacgc tgtcgctact gatctcgtta ctcggttcgc tctctctagt
     2581 gttcatttac tatcaagtcg ttcaaacctc tacttccctg gaggcttcgt ctaaagctgc
     2641 tattggagat gcttatgcaa acatcggaac tttcacgtta gatctggata aggtatttat
     2701 agaaaaaccc aaacttcgcc cttacttcta tcaggggtgg gacatctcag aggaccatga
     2761 agactatcat gccgtgatgg gcatagctga aatgcagctt gacttcttcg atgcaaccct
     2821 gacccaattg gagatcaggc ctagagaaaa tgatctggaa atggcagcgg aagaaaaact
     2881 ttgggagaag tacttctcaa agagttttgc caagagtcga gttctgtgca agcgatacgc
     2941 tgacgatgag gattggtata gggagaactt gaaaaagtat gcgtccgagc cgtgtaagaa
     3001 atggggcttc gatatcgagt aggatcctta gatcacggct aaactgctgt gcggaaggtc
     3061 tcaattaatg aaaaaattag ggcgtcgtga ttttctaacg cgggccggtt tagccgcact
     3121 cggtacacca cttctttaca ctacttcctt cgctcttacc gcaccatcgt gcattgttat
     3181 cggcgctggt ttagcgggac ttgccgctgc ttacgccttg aaaaaagcag gttggaccgt
     3241 aacggtgatt gaggccagga accgaatcgg agggcgcgtc ttttctttta gttttgcgga
     3301 caatccgaat ttgatctgcg agcttggcgc cgaatgggtt ggcgtaggac acgaacgtgt
     3361 ccgcgcctta tgtcgggagt tcaagataga actgcaggat catcgctttg acgcgtcgct
     3421 gatgcgcgat ggagtgatta aaacctccgg caactggaac ttttcaccag aagccaacaa
     3481 ggctttggaa aggttcgaaa agcaatatcg agcttatagc cgtttggatc gagttaagtt
     3541 ggaccagcac gattggtgga cctggcttca gagaatcggc tttcccgaag acgatttgcg
     3601 gttgcgcgat ctaatggata gtacggattt tggagagtcg attcgtcatg tgtcggcata
     3661 cctcgcagcc gctgaacgtt tcgagtccgg tacagaaaac aacatggatt ttaaaatgac
     3721 cggcggcaac tctcggctgg tcaaagaact ggctctcagg gttggaccag agaatataaa
     3781 gaccggcatg gaagtcgagg agataagaca gcgagccggt tcagtgacag taaagactgc
     3841 cgccggtact ttcagcgcgg actcatgcat ttgcacggtt cctgcgcatg ttctccggaa
     3901 gatacgtttt gaacccccgc tgcccgctgc gcagttggcg gcagttgacg agttacagta
     3961 ctcccgaatc gtcaagaact ccatcctatt ttcggagcgc ttctggggca gcgaagattt
     4021 ttcgctcgtt accgatgtaa cctctcatta ttactttcac agttccaaga atcagcctgg
     4081 aatggaaggc atactgtgca gttacgctgt cggcgacaag gctgacgtgt tggctgcgca
     4141 aagcgatggc cgcagaatgg aaattattac gcgcgatttg cggcccgtca atgaacgtgc
     4201 accgcaactt gcacgcgcaa tcgcttctta cgcgtggcag cgagatcgtt acacgcacgg
     4261 cgcatacgcg ctctatcgcc cacgccaatg gtttggcttg cgtccgttgc tacaacgccc
     4321 acatcacaag gttctattcg cgggggaaca ccttgctgat tggcagggtt tcatggaagg
     4381 agcaatagag accggagaag aggcagctcg agcattggtt aacaagcgca gaagtgttcg
     4441 ccgagttgca tagcgtccca gtcgtcatcc gcacataccg tcccgcgtac tgataactca
     4501 ttgatgctcc cttacgagtt tgctgcgtct cttcagtgct aacatcgcca cgagcacgcc
     4561 cagcgcttca gttattatca gcagcaccgc ggtaagacga aacatgccct gcgcggcgcc
     4621 gggtgggagg tgg
//
LOCUS       DASWTX010000297         4272 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_133336, whole genome shotgun sequence.
ACCESSION   DASWTX010000297 DASWTX010000000
VERSION     DASWTX010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4272)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4272)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4272
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133336"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1379)
                     /locus_tag="VGD38_04550"
     CDS             complement(<1..1379)
                     /locus_tag="VGD38_04550"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY0727317.1"
                     /translation="MRMNKFRNNIVAALMLVALVSSLAFGQGGPAPTQQQQTTKGAVV
                     KGKAPVNKQVLKVKLPRAEEAKLANGLQVVLLRSTKVPTFNMQMVVLSGGLSDTADYR
                     GLARFTAWLLREGTKGRASKEIAEQVDALGATLGANSGFSAMTTNVSAGGLVENFDQT
                     LELFADVIRNPTFPQAEVDRYRNRTLSQLQLQRSFPQFLAQEQFNRAIYGTSHPASIV
                     APPAESLKKLSTKDLADFHAKYYRPNNAILAIVGDLTMKEIMPKLEKAFGSWEKGDVP
                     ATTIPAAPAQGEAKIYLIDRPGSVQTVLQLGTLGIERTNPDYFAVLLADRVLGGGPSG
                     RLFLNLREDKGYTYGAYSGFGGSKFKGTWTSSSEVRTDVTEGAMKEFMYELNRMRDEK
                     VAAEELENAKRAIVGSFALSLEQPQALLQNIITQKLYNLPVDYWDTYPQKVDAITADD
                     IQRVAKKYI"
     gene            complement(1394..2761)
                     /locus_tag="VGD38_04555"
     CDS             complement(1394..2761)
                     /locus_tag="VGD38_04555"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY0727318.1"
                     /translation="MRRVSKLLLPVFVCALAVLYGQAQTARSVRVDFKETTLKNGLRV
                     ITVEDHSAPVIAISVTYNVGSRNERKGRTGFAHLFEHMMFKGSENIGSGEHFLLVFNN
                     GGTMNGTTNEDRTNYFEALPANQLDLALFLEADRMKSLEITKENLDNQRNAVQEERRL
                     GVDNQAYGKSSEVQQELLYDNFAYKHSVIGSMEDLNAANVEDVAEFFKMYYAPNNATL
                     VLVGDFNTAEALAKIRTHFESIPRQPAPPAVDMTEPQQKAERRATVEDQLARAARLDL
                     AFKAVPGNTPDFYALQVLGAALQGGQSSRLYQKLVREKEMVTSVGGFMDEKRGVGAFY
                     TNATLRPNVKMADVEAAIYEEIERLKKEPIAEWELQKAKNTTRRNFINGLQSSLNRAV
                     TIGQYTVYYNEPNLINLRLDKVAAVTKEDVQRVANKYLLDTNRTVVITTPIAKAKPAT
                     GASGQ"
     gene            3005..>4272
                     /locus_tag="VGD38_04560"
     CDS             3005..>4272
                     /locus_tag="VGD38_04560"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HEY0727319.1"
                     /translation="MMRLKPIFAGLMAALAVLTLALAGNAQQPAPQQAASRFDITHYR
                     IEAQIIPEQHTLRAGADITFTPLDATRSVVFELNGSLKVETIEKDGKPLSGFVQDAVG
                     VGALGPSVRIDLGQVVPANQPVTLRIRWSGALVSPEGGPLATKRLAYVGTEGSYLMYA
                     SRWFPFHDYAADRATSDITLVVPQGVQVAGTSDDPVVAQADPKLGAVRYRFVHRNPVL
                     IGNFAAGQYINKNLRYHNYELQLYAMPGSEKRIEQYAELTGRVLEYYTKQYGKPLFGN
                     RLVVVQIDDESLDTYSGPGMVFLSSKMFDTTRPVPEEKLQREIAYQWWGQTVGLKSFD
                     DAWLSQGLAEWSAFAFRESTLTAGGLDAAQREQQERALTFEQTASIARAPSALDDQSA
                     AYQSIVFYKGSMIFRMLRETIGRENFDRLLR"
BASE COUNT          856 a         1235 c         1237 g          944 t
ORIGIN      
        1 tcgatatact tcttcgctac gcgctgaatg tcgtccgccg tgatcgcgtc gactttctgc
       61 ggatacgtgt cccagtaatc aacaggcagg ttgtagagct tctgcgtgat gatgttctgc
      121 aagagcgcct gcggctgttc gagcgagagc gcaaagctgc cgacgatcgc gcgcttcgca
      181 ttctcgagtt cctcagcagc caccttctcg tcgcgcatac gattgagctc gtacatgaac
      241 tccttcatcg cgccttcagt aacgtcagtt ctgacttccg agctcgaagt ccatgttcct
      301 ttgaacttcg aaccgccaaa gccgctgtac gcgccgtagg tgtagccctt gtcctcgcgc
      361 aggttcagga acaaacgtcc tgatggacca ccgccgagaa cgcgatccgc gagcaacacg
      421 gcaaagtaat ccgggttggt tcgctcgatg cccaacgtgc cgagttgcag cacggtctgc
      481 actgagccgg gacgatcgat caagtagatc ttcgcctcac cttgagccgg cgccgcggga
      541 atcgtcgttg ccggaacgtc gcccttttcc caactgccga acgccttctc gagcttcggc
      601 atgatctcct tcatcgtgag atcgccgacg atcgcgagga tcgcgttgtt gggccggtaa
      661 tacttcgcgt gaaaatccgc caggtccttg gtgctcagtt tcttgagcga ttcagcaggc
      721 ggcgccacga tcgaagccgg gtggctcgtg ccgtagattg cgcggttgaa ctgctcctgc
      781 gccagaaact gcggaaacga tcgctgaagc tgaagctgcg acaacgtgcg gttcctgtac
      841 cgatcgactt cagcctgcgg gaacgtcgga ttgcgaatga catccgcgaa aagctccagc
      901 gtctgatcga agttttcgac gaggccgcct gcgctcacgt tcgtcgtcat cgcagaaaaa
      961 ccggagttcg cgcccagcgt cgcgccgagt gcatcaacct gttcggcgat ctccttgctc
     1021 gcacggccct tggttccttc acgcagcaac cacgccgtga agcgcgccag accgcgatag
     1081 tcggccgtgt cggaaagacc gccgctcagc acaaccatct gcatgttgaa ggtcggcacc
     1141 ttcgtgcttc tgagcagcac tacctgcaaa ccattcgcga gctttgcttc ctcggcgcgc
     1201 ggaagtttta ctttcaagac ctgcttgttg acaggcgcct tacctttgac tactgcgcct
     1261 ttcgtcgttt gctgttgttg ggtcggcgcc gggcctccct ggccgaaagc caacgacgaa
     1321 acaagcgcaa ccagcatcag tgcggcaaca atgttgttgc gaaacttatt cattctcatt
     1381 gttcataact cctttactgg cctgaggcgc cggttgcggg cttggccttt gctatcggcg
     1441 tggtgatcac caccgtgcga ttggtgtcga gaagatactt gttcgcgacg cgctgcacgt
     1501 cttctttcgt cacggcagcg actttgtcca agcgcaaatt gatcaggtta ggttcgttgt
     1561 aataaacggt gtactggccg atcgtcacag cacggttgag cgagctttgc agaccgttga
     1621 tgaagttgcg gcgagtggtg ttctttgctt tctgcagttc ccactcggca atcggctctt
     1681 tcttcaaccg ctcgatctct tcgtagatag ccgcttcaac gtcagccatc ttcacgttcg
     1741 ggcgcagcgt ggcgttcgtg tagaacgcgc cgacaccgcg cttctcgtcc atgaaaccgc
     1801 caacggacgt gaccatctct ttctcacgca cgagcttttg ataaagccgc gagctctggc
     1861 cgccctgcaa agctgcgccg agcacttgca acgcgtaaaa gtcaggcgtg tttccgggca
     1921 cggctttgaa cgccagatcg agacgcgcgg cgcgggccaa ctggtcttcg accgtcgcgc
     1981 ggcgttccgc tttctgttgc ggctcggtca tgtcgaccgc gggcggagcg ggctggcgcg
     2041 gaatgctttc gaagtgggtc cgaatcttgg ccaatgcttc agcggtgttg aagtcgccga
     2101 cgagcacgag tgtggcgttg ttcggagcgt agtacatctt gaagaactca gcgacgtctt
     2161 cgacgttcgc ggcgttgaga tcttccatcg aaccgatcac ggagtgcttg taagcgaaat
     2221 tgtcgtaaag caactcctgc tgaacttcgc tgctcttgcc gtatgcctgg ttgtcgacgc
     2281 cgaggcggcg ctcttcctgc acagcgttgc gctggttgtc gaggttctct ttggtgatct
     2341 cgaggctctt catacgatcg gcttcgagga agagagccag atcgagctgg ttcgccggca
     2401 gtgcttcgaa ataattagtg cggtcttcgt tggtggtacc attcatggtg ccgccgttgt
     2461 tgaagacgag caggaaatgt tcgccggaac cgatgttctc ggagcccttg aacatcatgt
     2521 gttcgaagag gtgggcgaag ccggtgcggc ctttgcgctc gtttcgggaa ccgacgttgt
     2581 aagtcaccga aatcgcgatc accggggctg agtggtcttc gacggtaatg acacggaggc
     2641 cgttcttcaa ggtcgtttcc ttgaagtcga cccgcacgct gcgggcggtt tgggcttgcc
     2701 cgtagagaac agcgagcgcg cagacaaaga cgggaagtaa aagcttagag acgcgtctca
     2761 taaaatcaca actccttttg taacgtggat agagctctca atcgagcaag gatgcagcaa
     2821 cgcagaatgg agactgtatt tgttgaaaca gggagtgtca agccggccca caatcaaacc
     2881 acagtttcga cagatctggg ataaatagcc aaccgcaggg gggttctcgc catccaaaag
     2941 cctcgcagcg gattcctctt agcggttgga acggctgtat aatcgttcgc aaataccgaa
     3001 agccatgatg agattaaagc ctatcttcgc cggcctcatg gcggccctgg ccgtcctgac
     3061 gcttgccctc gcgggaaacg cacaacagcc tgcccctcag caggccgcca gtcgttttga
     3121 tatcacgcac taccgtatcg aagctcaaat tatccccgag cagcacacgc tgcgcgcggg
     3181 cgccgacatc acgtttacgc cgctggacgc cacgcgctca gtggttttcg agctcaacgg
     3241 ttcgctgaaa gtcgagacga tcgaaaaaga cggcaagcca ctgagcggct tcgtgcagga
     3301 cgcggtcggc gtgggcgcgc ttggaccaag cgtgcgtatc gacctgggcc aggtagttcc
     3361 ggcaaaccag ccggtgacgc tgcgtattcg ctggagcggc gcgctggttt cgcccgaagg
     3421 cggaccgctc gcgaccaagc gtttggctta cgtcggcact gaaggttcgt acctgatgta
     3481 tgcctcgcgg tggtttccgt ttcacgacta cgccgctgac agagcgacgt cggacatcac
     3541 gctcgttgtt ccacaagggg tgcaggtcgc gggcaccagt gacgacccgg tcgtcgctca
     3601 agccgatccg aagttaggcg cggttcgtta tcgcttcgtg catcgcaatc cggtgctgat
     3661 cggaaacttc gccgccgggc aatacatcaa caaaaacctg cgctatcaca attacgaatt
     3721 gcagttgtac gcgatgccgg gcagcgagaa gcggatcgag caatacgctg agttaaccgg
     3781 ccgcgtgctc gagtactaca ccaaacagta cggcaagcca ctgttcggca atcgccttgt
     3841 cgtggtgcag atcgacgacg agagcttaga cacgtactcc ggtccgggaa tggtcttcct
     3901 gtcgagcaag atgtttgaca cgacgcgtcc cgtgcccgaa gagaaacttc aacgcgagat
     3961 cgcgtatcag tggtggggtc aaacggtcgg tctcaagtct tttgacgatg cgtggctctc
     4021 gcagggtctc gccgagtgga gcgcattcgc atttcgcgaa agcacgctca cagcgggcgg
     4081 tctcgacgca gcacaacgcg aacaacagga acgtgcactg acgttcgaac aaaccgcttc
     4141 gatcgcgcgt gcgccgagcg cactggacga tcaatcagcc gcgtatcaat cgatcgtttt
     4201 ctacaaaggc tcgatgatct ttcgcatgct gcgcgagacg atcggacgcg aaaacttcga
     4261 tcgcctgttg cg
//
LOCUS       DASWTX010000298         2170 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_263593, whole genome shotgun sequence.
ACCESSION   DASWTX010000298 DASWTX010000000
VERSION     DASWTX010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2170
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263593"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..360
                     /locus_tag="VGD38_04565"
     CDS             <1..360
                     /locus_tag="VGD38_04565"
                     /inference="COORDINATES: protein motif:HMM:NF013540.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY0727320.1"
                     /translation="EALKAKRLAAKLSQQSFAKSMKSSQSRIAKAEANDPSVSLDLLV
                     RSLIALGASIAELGKILEIKQASADFDSVAANQSSSETVSQTTKRKQTKQPTKRATTK
                     RARKGVLRAKKGTAKAA"
     gene            complement(372..824)
                     /locus_tag="VGD38_04570"
     CDS             complement(372..824)
                     /locus_tag="VGD38_04570"
                     /inference="COORDINATES: protein motif:HMM:NF020977.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HEY0727321.1"
                     /translation="MSLSEQIISDLTTSMKAQDAQRTSTLRMVKAAMMNRKIEKGSEL
                     DDDEVQKLLRSLVKQRRDSIEQYEKAGRQELVDKEQAEIAVIETYLPQAASLAEIEAA
                     VAAAIAETGATSIKDMGKVMKATQSALAGKNADGKVVADTVKARLSAG"
     gene            complement(814..>2170)
                     /locus_tag="VGD38_04575"
     CDS             complement(814..>2170)
                     /locus_tag="VGD38_04575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727322.1"
                     /translation="GALYVLDEPSIGLHPRDNDRLIRLLKNLRDSGNTVLVVEHDAEM
                     MRSADHILDIGPAAGELGGRVIYEGDFDGLLQDEASLTARYLRGDAEIKEPKQRRVPQ
                     KRRLTIQGASEHNLKSIDVEIPLDMLVCVTGVSGSGKSTLIHDCIYAGLKKQRGDWQG
                     HVGAFQKLEGGQFIDDVILVDQSPIGRTPRSNPVTYIKVYDAIREVFSGTREAQARGF
                     DPSHFSFNLPGGRCEVCQGDGTVTVEMQFLADIELVCEECKGTRFKQQILDVRYRGKN
                     VHEVLNMTVREAINFFREVPKITNRLRVLDDVGLGYLRLGQSATTLSGGEAQRIKLAA
                     HLLKRTGAKTLYIFDEPTTGLHFDDINKLLAAFRALIDAGGSLLVIEHNLDVIKTADH
                     IVDLGAEGGDAGGYVVGVGTPEEIMDIPASHTGRFLRDYLAKANGHVKRSGRKVLEDE
                     S"
BASE COUNT          436 a          641 c          626 g          467 t
ORIGIN      
        1 gaggctctga aagctaagcg actggcggcc aagctctcac aacaatcatt cgctaagtct
       61 atgaaatcga gtcagtcgcg aatagcaaag gctgaggcga atgatcctag tgtatcgctc
      121 gaccttctgg ttcgttccct cattgctctc ggtgcaagca tcgccgagtt aggaaagatc
      181 ctggagatta aacaagcaag cgccgacttc gattcagtag cggcaaatca aagctcctca
      241 gaaacggtaa gtcaaaccac caaacggaaa caaacgaaac aaccaaccaa gcgagcaacc
      301 accaagcgag caagaaaggg cgtcttgaga gccaaaaagg gtaccgccaa agcggcttaa
      361 ggaatttgct ctcagccggc gctgagtctt gctttcaccg tatcagcgac gactttgccg
      421 tccgcgttct tgccggccag ggcggattgg gtggctttca tgactttgcc catgtcctta
      481 atggaggtgg cgccggtttc ggcgatggcg gcggcgaccg ctgcttcgat ttcggcaagg
      541 gaggcggctt gggggaggta ggtctcgatg acggcgatct ccgcctgctc tttgtcgacc
      601 agttcctggc gcccggcttt ttcgtattgc tcgatggagt cgcgacgctg ttttaccagc
      661 gagcgtaaga gcttttgaac ttcgtcgtcg tccaactcgg aacccttttc gatcttgcgg
      721 ttcatcatcg ccgctttcac catgcgcagg gtcgaggtgc gctgcgcgtc ctgcgccttc
      781 atcgaggtgg tcaggtcaga aataatctgt tcactaagac tcatcttcca aaacctttct
      841 gccgctgcgt tttacgtgcc cgttggcttt cgcgaggtaa tcgcggagaa aacgtcccgt
      901 gtgcgacgcc ggaatgtcca tgatctcttc gggcgtgccg acgccgacga cgtaaccacc
      961 ggcatcgccg ccctcagcgc cgagatcgac gatgtggtcg gcggttttga tcacgtcgag
     1021 gttgtgttcg ataaccaaca gcgaaccacc cgcgtcgatc agcgcgcgaa aggccgcgag
     1081 cagtttgttg atatcgtcga agtgcagtcc ggtggtcggc tcgtcgaaga tgtagagcgt
     1141 cttcgcgccg gtgcgcttca acaaatgcgc ggcgagcttg atgcgctgtg cttcaccgcc
     1201 tgacaacgtc gtcgccgact ggcccaatcg caaataacca agaccgacgt catcgagcac
     1261 gcgcaagcgg ttcgtgatct tcggcacttc gcgaaagaag ttgatcgcct cgcgcaccgt
     1321 catgttgagc acttcgtgaa cgttcttgcc gcgatagcgc acgtcgagga tctgctgctt
     1381 gaaacgcgtg cctttgcact cctcgcacac cagctcgatg tcggcgagaa actgcatctc
     1441 gaccgtcacc gtgccgtcgc cctggcaaac ctcacaacgc ccaccgggta aattgaatga
     1501 gaagtgcgac gggtcgaaac cgcgcgcctg tgcttcgcgc gtgccggaga aaacctcgcg
     1561 gatcgcatcg taaaccttga tgtacgtgac gggattcgat cgcggcgtgc ggccgatggg
     1621 cgactggtct acgaggatca cgtcgtcgat aaactgcccg ccttcgagtt tctgaaacgc
     1681 gccgacgtgt ccctgccagt cgccgcgttg ttttttcaga cccgcgtaga tgcagtcgtg
     1741 aatcaacgtc gacttcccgg agccgctcac gccggtcacg cagacgagca tgtccaacgg
     1801 aatctcgacg tcgatcgact tgagattgtg ttcggacgcg ccctggatcg tgaggcggcg
     1861 tttctgcggc acgcgtcgtt gttttggttc cttgatctct gcgtcaccac gcaggtagcg
     1921 cgcggtcagc gaggcttcgt cctgcaacag accgtcgaag tcgccttcgt aaatcacgcg
     1981 tccgcccaac tcgcccgccg ctggaccgat gtcgagaatg tgatccgccg agcgcatcat
     2041 ctccgcgtcg tgttcgacga cgagcacggt gttgccgctg tcgcgcaggt tcttcaacaa
     2101 tcgaatcagc cgatcgttgt cgcgcgggtg cagtccgatc gaaggctcgt cgagcacgta
     2161 aagcgcgccg
//
LOCUS       DASWTX010000299         2003 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_48642, whole genome shotgun sequence.
ACCESSION   DASWTX010000299 DASWTX010000000
VERSION     DASWTX010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48642"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..653)
                     /locus_tag="VGD38_04580"
     CDS             complement(<1..653)
                     /locus_tag="VGD38_04580"
                     /inference="COORDINATES: protein motif:HMM:NF012449.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0030955 - potassium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEY0727323.1"
                     /translation="MRTLDDGHVKSLLKTKIVATVGRERSGPEAGRGDEVFDPNGDPV
                     MGVLPHDVLLSWLVRAGVDVIRLNMSFASDQEPYGAVEKQIMEWVGANRDGLARHVAV
                     LGDLPGPKIRLRIREAVRVKLGETFTLNFTSENPHGEREAAVLVNDQAFATIASVNKM
                     RLEDYLRRTRDKGEEIVFSIGDGKVILKAAEVVKGQPGVVRCSVLKGGEVRNKQGLT"
     gene            complement(725..1408)
                     /locus_tag="VGD38_04585"
     CDS             complement(725..1408)
                     /locus_tag="VGD38_04585"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: protein motif:HMM:NF001453.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004719 - protein-L-isoaspartate
                     (D-aspartate) O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HEY0727324.1"
                     /translation="MQSANRHLSPIRQEYSIPRERMVARLREHYGIRDPRVLEAMRSV
                     PRHFFVPEALQSRAYGDHALPISANQTISQPFIVARMTELLELDRDNRVLEIGAGSGY
                     QTAVLAFIAAQVYAIERIGDLAREAQARIRQLDIYNATVKCFDGTLGWAAHAPYDAIL
                     VAAGGPTVPDPLIAQLKIGGRLVVPVGESREAQRLIRVIKTETGYREEDHGGCAFVPL
                     IGQHGWQDR"
     gene            complement(1427..>2003)
                     /gene="surE"
                     /locus_tag="VGD38_04590"
     CDS             complement(1427..>2003)
                     /gene="surE"
                     /locus_tag="VGD38_04590"
                     /EC_number="3.1.3.5"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008253 - 5'-nucleotidase activity
                     [Evidence IEA];
                     GO_function: GO:0008254 - 3'-nucleotidase activity
                     [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HEY0727325.1"
                     /translation="GTPTDCITLALNKILPEDQRPHVCVSGINHGGNLGDDATYSGTV
                     AGALEAAILGVPGLALSLVARDNFDVEDAAAFAVVATRKVLEEGLPEGTLLNVNIPPG
                     EIKGVKVTRQGIKNARPVITEHIDPRGKPYFWIGEEYFNANSVEGTDYHAVKEGYVSV
                     TPLRSDMTDHRALTALDTWNYLKDSDLVHKS"
BASE COUNT          398 a          589 c          571 g          445 t
ORIGIN      
        1 atcgtcaggc cctgtttgtt gcgaacttcg ccgcccttca gcacgctgca tctgacaaca
       61 cccggctggc ccttaactac ttccgcggcc ttcaggatca ctttgccatc gccaatcgag
      121 aagacgatct cctcaccttt atctctcgtg cggcgcaggt agtcctcaag acgcatctta
      181 ttaacgctgg cgatcgtcgc gaacgcctga tcgttaacca ggaccgcggc ttcccgttca
      241 ccgtgcggat tctcgctggt gaagttgagc gtgaaagtct cgccgagttt tactctcact
      301 gcctcgcgga tacgcagcct gatcttcgga ccgggcagat cgccgagtac ggcaacgtgt
      361 cgcgccagtc cgtctcgatt cgcgccgacc cactccatga tctgtttctc gaccgcgcca
      421 tacggctcct ggtcggaagc aaacgacatg ttgagccgaa tcacgtcgac accggcgcgc
      481 accagccacg acaacaaaac atcgtgtggc aacacgccca tgacgggatc gccgttcgga
      541 tcgaacactt catcaccgcg tccggcttcg ggaccactgc gttccctgcc gaccgtagcg
      601 actatctttg ttttgagtaa cgatttgacg tgaccatcgt cgagtgtacg catgagggcc
      661 tccattcccg ggttgatggt gtttcccctg gacagttgcg aggatgcgta aagattatat
      721 cgagtcagcg atcttgccaa ccatgttggc cgatcagtgg gacaaaggcg cagccaccgt
      781 ggtcttcttc acggtaaccg gtttccgttt tgattactcg tatcaagcgt tgtgcttcac
      841 gcgactcgcc gaccggaaca accagacgcc cgccgatttt gagttgcgcg atcaatggat
      901 ccggcacggt tggaccaccc gcagcaacca ggatcgcgtc gtaaggcgcg tgcgcggccc
      961 agccgagcgt gccgtcgaaa cattttacag tagcgttgta gatgtcgagc tgacgaattc
     1021 gcgcttgtgc ttcgcgcgcg agatcgccga tgcgttcaat tgcgtagacc tgagcggcga
     1081 tgaaagcgag caccgcggtt tgataaccgg agccggcgcc gatctccaac acgcgattgt
     1141 cgcggtcgag ctccagcagc tccgtcatgc gagcgacgat gaaaggctgt gagattgtct
     1201 ggttggcgct gatgggcaac gcgtgatcgc cgtaagcacg gctctgcaac gcttcaggca
     1261 cgaagaagtg acgcggcaca ctgcgcatcg cttcgagcac tcgcggatct ctgatgccgt
     1321 aatgctcgcg caggcgcgct accatccgct cccgcggaat agaatactcc tgccgaatcg
     1381 gggaaagatg tctgttggct gactgcactg aagagtattg tacagattaa ctcttgtgga
     1441 ctaaatcaga gtctttcaga taattccacg tgtcgagcgc cgttagtgca cgatggtcgg
     1501 tcatgtcgct gcgcagcgga gtcactgaca catagccttc cttcactgcg tgatagtcag
     1561 tgccttcgac cgagttggcg ttgaaatact cttcaccgat ccaaaagtaa ggcttgccgc
     1621 gtggatcgat gtgctctgtg attaccggac gcgcgttctt gatgccctgc cgagtgacct
     1681 tcacgccttt gatctcgccg ggcgggatat tgacgttcag cagcgttcct tccggcaatc
     1741 cttcttcgag cactttacgc gtggcgacga cggcgaacgc agcagcgtct tcgacatcga
     1801 agttgtcgcg tgcgaccaga ctcagcgcaa gaccgggaac gccgagaatc gcggcttcga
     1861 gcgcaccggc taccgtgccg gagtaagtcg catcgtcgcc gagattgccg ccgtgattga
     1921 ttccggaaac gcaaacgtgc gggcgttggt cttcaggaag aattttgttg agtgcgagtg
     1981 tgatgcagtc ggtgggagtg ccg
//
LOCUS       DASWTX010000300         1663 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_155241, whole genome shotgun sequence.
ACCESSION   DASWTX010000300 DASWTX010000000
VERSION     DASWTX010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1663
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155241"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(42..>1663)
                     /locus_tag="VGD38_04595"
     CDS             complement(42..>1663)
                     /locus_tag="VGD38_04595"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HEY0727326.1"
                     /translation="RALKHHVENNKVGGIILFRSPVYESVILVNRMQQLAKYPLLISA
                     DLESGPGMRFDDTINFPWNMAVAATGNPDYARRQGELTAREARALGIQQIFAPVVDVN
                     NNAANPVINVRSYGEDPADVARFGAAFTEGTQAAGAIATAKHFPGHGDTAVDSHRGLP
                     EINVSRERLNSVEFVPFQASINAGVASVMVGHIALPQIDSTAIKPLPRNMKGKPIDTD
                     EAGEIVEEKATMPATLSPVLGNILRNDLKFPGLIVTDALSMSGLTIYFTPEEAAVRAL
                     EAGADMLLKPADVDAAFRGVRDAVKSGRITEARVEESARKILAAKYDLGLVEQRLTPV
                     DMIDRIVGSKEVLKLAAEISEDAVTLVRDEDKLVPMKNLKPETKIFNLAVTNGDDRMW
                     IANPFTARINRSGVKVETVVLDERSSEQDVQKAIERATAADLVLASLYGRVRSGQVSS
                     VGIPDPGARALAGVIAAKKPVVGISFGNPYLLQSFPGLRTYLVAYGDMPSLQHAMARA
                     LMGEIDITGKLPISLPGLYPRGTGIQVKATK"
BASE COUNT          322 a          515 c          476 g          350 t
ORIGIN      
        1 ggttgcgcaa ccagcaagac gatcagtacg agtcgcagca tctatttagt cgccttcact
       61 tggattccgg ttccgcgcgg atacagaccc ggcaaagaga tcggcagctt gcccgtgatg
      121 tcgatctcgc ccatcaacgc acgcgccatc gcgtgttgca aactcggcat gtcgccgtac
      181 gcaacgaggt atgtccgcaa accgggaaaa ctctgcaaca gatatggatt gccaaaactg
      241 attccgacga ccggtttctt cgccgcaatc acaccagcca acgcgcgcgc tcccggatcg
      301 ggtatgccaa cactcgaaac ctgacccgat ctgacgcggc catacaacga agcaagcacc
      361 aaatcagccg ccgtcgcacg ctcgatcgct ttttgcacgt cctgttcgct cgaacgttcg
      421 tcgagcacga cggtttcaac cttcacaccg ctgcgattga ttctcgccgt aaacgggttc
      481 gcgatccaca tccggtcgtc accgttcgtg accgcgagat tgaaaatctt cgtctccggt
      541 ttcagattct tcattggaac gagtttgtct tcgtcacgaa cgagcgtgac cgcatcttca
      601 gaaatctctg ccgcgagctt caacacctct ttgctgccca cgatccgatc gatcatgtcg
      661 acgggcgtga gccgctgttc caccagcccg aggtcatact tcgccgcgag tatcttgcgc
      721 gcggattctt cgacgcgcgc ttcggtgatg cgtccgctct tcaccgcgtc gcgcacaccg
      781 cgaaacgctg cgtcaacatc cgccggcttc agcagcatgt ccgcgccggc ttcgagcgcg
      841 cgcaccgccg cttcttcggg agtgaaatag atcgtcagtc cactcatact gagcgcgtcg
      901 gtgacgatca ggccgggaaa cttcagatcg ttgcgcagga tgttgcccaa caccggcgac
      961 agcgtcgcgg gcatggtcgc tttctcttcg acgatctcgc cggcttcgtc cgtgtcgatc
     1021 ggttttcctt tcatgttccg aggcaacggc ttgatcgcgg tcgagtcgat ctgcggcaac
     1081 gcgatatggc ccaccatcac ggacgcgacg ccggcgttga ttgaagcctg gaacggaaca
     1141 aactcgacgc tgttgagacg ttcgcggctg acgttgatct ccggcaaccc gcggtgtgaa
     1201 tcgacggccg tgtcgccgtg accgggaaag tgtttcgcgg tggcgatcgc gcccgctgcc
     1261 tgcgtgcctt cggtaaacgc ggcgccaaag cgcgccacgt cagccgggtc ttcgccgtaa
     1321 gaacgaacgt tgatcacggg attcgcggcg ttgttattga cgtcgacaac gggtgcgaaa
     1381 atctgttgta tgccgagcgc gcgagcttca cgcgcggtta gctcgccctg gcgccgcgcg
     1441 taatcgggat tgccggtcgc ggcgacagcc atgttccacg gaaagttgat cgtgtcgtcg
     1501 aaacgcatgc ccgggccgga ttcgaggtcc gcggagatca ggagcggata cttcgccagt
     1561 tgctgcatgc gattgacgag gattacggat tcgtaaaccg gactgcggaa aagaatgatg
     1621 ccgccgacct tgttgttttc gacgtgatgc ttcagcgcgc gaa
//
LOCUS       DASWTX010000301         4491 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_373429, whole genome shotgun sequence.
ACCESSION   DASWTX010000301 DASWTX010000000
VERSION     DASWTX010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4491)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4491)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4491
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373429"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1936
                     /locus_tag="VGD38_04600"
     CDS             <1..1936
                     /locus_tag="VGD38_04600"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HEY0727327.1"
                     /translation="EGLANRARQQQQNAIETSPQRGELLDRQGRQLARSVQTVSLFLD
                     PGDLDVGQLECTAQQLSQSLGMKYKELLAEFREAQAEKKRFIWIARRLDAEVGNKLVE
                     MKLPGLQSVLEPKRYYPNGPLAAHVLGYVGLDGDGLGGLESFYNAKIAGEPGRLFLEK
                     DAQGKPYESYEIASKPGQTVVLTIDQSIQYQAEQALNNAVKSSRAKSGTVIVLDPRSG
                     EILALANAPTFDPNQVAASSAATRSNWALQNIYEPGSTFKVVAFSAALERNLVRVEDH
                     IDCQMGAITVAGRVVHDHKPFGTLTISEALAKSSNVAAIKLGIRVGDETMYDYIKRYG
                     FGSKTGIELPGETAGLLRKVERWHPSSIGSIAIGQEIGVTPVQMVAAFGALANNGVRV
                     APHIIREVRNEAGAVVYQPQPEQRRVISSEVAIALRGMLEEVTLRGTAKAAQLDGYSA
                     AGKTGTAQKIDPKTRAYSATKFVASFVGFAPVSNPQVVIIVVVDEPGGAYHGGDVAAP
                     IFREVAEQILPILGVMPDIETKSTPELVAQADQDPERAAKLREEQARAEQERRATLPT
                     VDSNGGRGGEVVYAVGTRKAMLMPDLRGRSVRDVARTAAQLGLQLEARGEGRVYKQTP
                     AAGSEVNTGQTIYVDFGRSQ"
     gene            2178..3596
                     /gene="murF"
                     /locus_tag="VGD38_04605"
     CDS             2178..3596
                     /gene="murF"
                     /locus_tag="VGD38_04605"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR01143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0047480 -
                     UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HEY0727328.1"
                     /translation="MFDNIITGFSIDSRSVGAGELFFALSQKDYSRAGFNGEFVDAHR
                     FIADAFRQGAIAAVARADRVNGDPELEAMRDRLLLVDDAIAALQLLAHRVYEAWNKPV
                     VGITGSAGKTTAKELTAHVLKSAGHRVLKSERNYNNGLGLPLSVLRMVSEGNSPDQFD
                     LAVLEMGMSSPTHEIQRLCRITPPDVGVELMVAPVHLEYLGSIENIAAAKAELIEGLK
                     PSGTAILNADDALVMKMREKHAGKTLTFGTTNPADVSAVDIDTSSLGKVRFRLLTPDG
                     EARTELSMSGHHNLSNALAAATVGVAFGLSAEEIANALSTARPPKMRGEIVDFAAGFT
                     VIDDSYNSNPRSLLNMVRTMAEGREGRKRLLVIAGEMLELGPDEASLHRAAGREIAET
                     GVNVLWGVRGLAKEIVLGAQEAGLSETRFFNSSEDAAAEVIKEVNEGDLVLVKGSRGV
                     ATEKVIKALKEQFPLAGEDVRN"
     gene            3593..>4491
                     /gene="mraY"
                     /locus_tag="VGD38_04610"
     CDS             3593..>4491
                     /gene="mraY"
                     /locus_tag="VGD38_04610"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEY0727329.1"
                     /translation="MIYYLLYELLFTHFKDKDWYLVKALNVFQYVTFRTAYATITALL
                     ISLIFGGKLIEWLRRLKVGQQIREEGPQAHMVKRGTPTMGGVLIVGSVLISTLLWARL
                     SSVYVWTAIIATLLFALIGFLDDYSKMAKKQSLGLTGRQKLLGQLLVAVGVWAVLFVS
                     AKLIGGTGYSWNLSIPFIKATADPNKSFIGPYLYLVLIVIVLLGSSNAVNLTDGLDGL
                     AISVTFIAMTALTGFTYLSSDARWAGYLDLTHRPEAAELTVFCGAMAGASLGFLWYNA
                     PPAQVFMGDVGSLAIGGAMGTVAV"
BASE COUNT          913 a         1156 c         1494 g          928 t
ORIGIN      
        1 cgaaggtctc gcgaaccgcg cccggcaaca gcaacagaac gcgattgaaa ccagcccgca
       61 gcgtggcgaa ctgctcgacc gtcaaggccg gcagctcgcg cgcagcgtgc aaacggtttc
      121 actgtttctc gatccgggcg atctcgacgt cggacagctc gagtgtacgg cgcagcaact
      181 ctcgcagtcg ctcgggatga agtacaagga actgctcgcc gagtttcgcg aagctcaagc
      241 cgagaagaaa agatttatct ggatcgcgcg gcgtctcgac gcagaagtcg gcaacaagct
      301 cgtcgagatg aagctgccgg gtttgcagtc ggtcctggag ccgaagcgct attacccgaa
      361 tggaccactc gccgcgcacg tgcttggtta cgtcggtctc gacggcgatg gtctcggcgg
      421 cttggagagt ttttacaacg cgaagatcgc gggcgaaccc ggccgtctgt ttttggaaaa
      481 ggacgcgcag ggcaagccgt acgagagtta cgagatcgct tcgaagccgg gacagactgt
      541 cgtacttacg atcgatcagt ccattcagta ccaggctgag caggcgctga acaacgcggt
      601 caagagctcg cgcgcgaaat cgggaaccgt gatcgtgctc gatccgcgca gtggagagat
      661 cctcgcgctc gcgaatgcgc cgacgttcga tccgaatcaa gtcgcagctt cttccgcggc
      721 aacacgatcg aactgggcgt tgcaaaacat ctacgaaccc ggttcgacgt tcaaagtcgt
      781 cgcgttctcc gccgcgttgg aaagaaacct cgtgcgtgtc gaggaccaca tcgactgcca
      841 gatgggcgcg atcacagtcg ccggacgtgt ggtccacgat cacaaaccgt tcggtacgtt
      901 gacgatctcg gaagcgctcg cgaagtcgag caacgtcgcc gcgattaaac tgggaataag
      961 agtcggcgac gagacgatgt acgactacat caagcgctac gggttcgggt cgaaaaccgg
     1021 gatcgaactg ccgggcgaaa ctgcgggact gttgcgcaag gtcgagcgct ggcacccgtc
     1081 gtcgattgga tcgatcgcga tcggtcagga gatcggtgtc acgccggtgc agatggtcgc
     1141 ggcgtttggc gcgctcgcga acaacggcgt gcgagtcgcg ccgcacatca ttcgtgaagt
     1201 tcgtaatgaa gcgggcgcgg ttgtttacca gccgcagccg gaacagcgaa gagtgatcag
     1261 ttccgaagtc gcgatcgcgt tgcgtggaat gctggaagaa gtgacgttgc gcggcactgc
     1321 gaaagcggct cagttggacg gttattccgc ggccggcaaa accggtacgg cgcaaaagat
     1381 cgatccgaag acgcgcgcgt attcggcgac gaagtttgtc gcttcgtttg ttggtttcgc
     1441 gccggtttcc aatccgcagg tcgtgatcat cgtcgtcgtg gatgaacccg gcggcgcgta
     1501 tcacggcggc gatgttgccg cgccgatctt tcgtgaagtt gccgaacaga tcctgccgat
     1561 actcggcgtg atgccggaca tcgaaacgaa gtcgacaccg gaactggtcg cgcaggcgga
     1621 tcaggatccg gaacgcgctg cgaagttgcg cgaagagcag gcgcgtgcgg aacaggagcg
     1681 gagagccacg ttgccgaccg tggatagcaa cggaggccgt ggcggtgaag tcgtttacgc
     1741 tgtcggaacg cgcaaggcga tgttgatgcc ggatctgcgc gggcgcagcg tgcgcgacgt
     1801 ggcgcggacg gccgcgcagc tcgggttgca gcttgaagcg cggggcgagg gaagggttta
     1861 caaacagacc cccgcggcgg gcagcgaagt gaacacaggt cagaccattt acgtggattt
     1921 cgggagatct caatgaactc cgtggcagat gaagagatgc cggaaaatga cgtacactct
     1981 cgtattgctg attgcagacg acgactacgc agtcagcgtt caaccttccg gcaaaatcgt
     2041 ttcccccaac acgatatgga cgagccgccg tcagatttgg tgacggcgct gcttgaggaa
     2101 cgagaagagg ccgtaatcac gtgaacgttc gagaggcagc agttttgatg ggcgcggaaa
     2161 tgtctcctgc ggccccgatg tttgacaaca taattaccgg cttttcgatt gactcgcgtt
     2221 ctgtcggcgc gggcgagctc ttctttgcgc tgtcgcagaa agactactcc cgcgccggtt
     2281 tcaacggtga gtttgtcgac gcgcaccggt tcatcgccga tgcgtttcga caaggtgcga
     2341 ttgccgcggt ggcgcgcgcc gatcgtgtga atggcgatcc ggagttggaa gcgatgcgcg
     2401 atcggctcct gctggttgac gacgcgatcg ccgcgttgca actgcttgcg catcgcgttt
     2461 acgaagcgtg gaacaaaccc gtggtcggga tcaccggcag tgcgggcaag acgacggcga
     2521 aagagttaac ggctcacgtg ctgaagtccg cgggtcatcg cgtgttgaag agtgagcgca
     2581 actacaacaa cggactcggt ctgccgttgt cggttttgcg catggtcagt gaaggtaatt
     2641 cgccggatca gtttgatctc gcggtgttgg aaatgggcat gtcgtcgccg acgcatgaga
     2701 ttcaacgttt gtgccgcatc acgccgccgg atgttggcgt tgagttgatg gtcgcgccgg
     2761 tgcatctcga gtatctcggg tcgatcgaga acattgccgc agcgaaagcg gaactgatcg
     2821 agggtttgaa accaagtggg acggccatcc tgaacgcgga tgacgcgtta gtcatgaaga
     2881 tgcgtgagaa acacgcgggc aagacgttga cgtttggaac cacaaatccc gcggatgtgt
     2941 cggcagtgga tattgatacc agttctttgg gtaaggttcg gtttcgtttg ttgacgccgg
     3001 atggtgaagc gcgcacggag ttgtcgatga gcggtcatca caacctgagc aacgcgctcg
     3061 cggcggcaac tgttggcgtt gcatttggtt tatcggctga agagatcgcg aacgcgttga
     3121 gcacggcgcg gccgccgaag atgcgcggag agatcgtcga cttcgcggcc gggttcactg
     3181 ttatcgacga ctcttacaac tccaatccgc gttcgttgct gaacatggtg cggacgatgg
     3241 ctgaaggccg tgagggccgc aaacgtttgt tggtgatcgc tggagagatg ctggaactcg
     3301 gtccggatga agcgtcattg caccgcgctg ccggacgcga gatagcggag accggcgtga
     3361 atgtgctttg gggagtgcgt ggcctggcga aggagatcgt tctgggggcg caggaagcag
     3421 ggctgtcgga gacgaggttt ttcaactcgt ccgaagacgc tgcggcggag gtgatcaagg
     3481 aggtcaacga gggcgacctg gttttggtga agggatcgcg gggtgttgcg acagagaaag
     3541 tgattaaggc gttgaaagaa cagttcccac tggcgggaga ggatgtaagg aattgatcta
     3601 ctaccttctt tacgagctgc tcttcactca cttcaaggat aaggactggt atctcgtaaa
     3661 ggccctcaac gtttttcaat acgtcacgtt tcgcaccgcg tacgcgacga tcaccgcgtt
     3721 gctcatctcc ctcatctttg gcggcaagct gatcgagtgg ttgagaagat tgaaagtggg
     3781 ccagcagatt cgtgaagaag gcccgcaggc gcacatggtc aagcgcggca ctccgacgat
     3841 gggcggcgtg ctgatcgtgg gttcggtttt gatctcgacg ttgctgtggg cgcgcttgtc
     3901 gagtgtctat gtttggacgg ccatcatcgc gacgttgctc tttgctctaa tcggctttct
     3961 ggacgactac tcgaagatgg ccaagaagca gagtctcggg ttgacgggac gccagaagct
     4021 gctcgggcag ttgctggttg cggtgggtgt ttgggccgtg ctgttcgttt cggcgaagct
     4081 catcggtggc acgggttatt catggaacct gagcattcct tttattaaag cgacggctga
     4141 tccgaacaag agcttcatcg gtccttactt gtacctggtt ctgatcgtga tcgtgctgtt
     4201 gggatcgtcg aacgcggtga atttgaccga cggtttggat ggattggcga tcagcgtgac
     4261 gttcatcgcg atgactgcgt tgaccgggtt tacctacctg agcagcgacg cgcgctgggc
     4321 cggctatttg gacttgacgc accggccgga agccgccgag ttaacagttt tttgcggcgc
     4381 gatggcgggc gcgagtcttg gtttcctgtg gtacaacgcg ccgcccgccc aagtgtttat
     4441 gggcgacgtg ggaagcctcg ccattggcgg ggcgatgggc acagtggcgg t
//
LOCUS       DASWTX010000302         1678 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_329966, whole genome shotgun sequence.
ACCESSION   DASWTX010000302 DASWTX010000000
VERSION     DASWTX010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1678
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329966"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..836)
                     /locus_tag="VGD38_04615"
     CDS             complement(<1..836)
                     /locus_tag="VGD38_04615"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY0727330.1"
                     /translation="MKLLILGGTRFLGRHLVETALERGHEVMLFNRGNYSIFDVETIK
                     GDRNEELAKLRGRSWDAVIDTCGYLPRAVRAAAEVLSDTVDRYILISSQSVYADVSVR
                     GVDETHPLKTLTDEELDRANGIDPSGAAGYGALYGGLKALCEQAAEEVMPGRVLNVRP
                     GLIVGPTDYTDRFTYWVVRIARGGEVLAPGRPQRPVQLIDVRDLSDWTVSMAEQKQQG
                     VFNVNRQPQTLTMEGLLDECKSTSGSDATFTWVSEQFLRDEEVMAWSAMPVYLPEQDA
                     PQ"
     gene            882..>1678
                     /locus_tag="VGD38_04620"
     CDS             882..>1678
                     /locus_tag="VGD38_04620"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEY0727331.1"
                     /translation="MRFIAAVIITLVCVTSNYATDVKHIRVMTFNIRYDEPRDGANAW
                     PNRKELVAGMIRFHNADLVGVQEALKGQIDDLEKLLPEYSWLGVGRADGKAGGEYSAI
                     FYRKLRFKSLESSTFWLSETPNVPGAGWDAALPRIVTWAKFRDLTTGKVFFHFNTHFD
                     HRGVKARTESARLMLSRIGQMAAASPVVVTGDFNFTESADGYKLLTGKSALRDARYIS
                     QHGHHGPTSTFNEFKALVPDKKIDYVFVKGNIRVVQHGVLSDTWDGR"
BASE COUNT          374 a          481 c          451 g          372 t
ORIGIN      
        1 aactgcggag cgtcctgttc tggtaagtaa acgggcatgg cgctccaggc catgacttcc
       61 tcgtcgcgca ggaattgttc cgacacccat gtaaacgtcg cgtcactgcc gctggtagat
      121 ttgcattcgt cgagcaggcc ctccatcgtc agtgtctgcg gttggcgatt gacgttgaat
      181 acgccttgct gcttttgttc cgccatcgat acggtccaat ccgagagatc gcgaacatca
      241 atgagctgca ccgggcgttg cgggcggccc ggagcaagaa cttcaccgcc acgagcgatg
      301 cgtacgaccc agtaagtgaa ccgatcggtg taatcagttg gaccaacgat cagccccggt
      361 cttacgttga gtacgcgccc aggcatcact tcttccgctg cctgttcaca cagcgccttc
      421 agtccgccgt agagcgcgcc atatccggct gcacccgatg ggtcgatgcc gttagcacga
      481 tcgagttcct cgtcagtcag ggtcttgagc gggtgcgttt catcgacacc gcgcacactg
      541 acatccgcat aaaccgactg gctcgagatc aagatgtaac ggtccactgt gtctgacaaa
      601 acttcagccg cggctcgcac cgcgcgcgga agatacccgc acgtgtctat cactgcgtcc
      661 caactgcgtc cacgaagttt agccagttcc tcgtttcgat cgcctttgat cgtctcgacg
      721 tcaaaaattg aataatttcc gcgattgaac agcatcacct cgtgcccacg ctccagcgcg
      781 gtctcgacaa ggtgccgacc gagaaatctc gtgccaccaa gaatcagcag tttcataacc
      841 aaagacgtcg cggacaggga actggtgtta ctatcctcaa aatgcgattc attgcggctg
      901 tcattatcac gctcgtttgc gtaacttcca actacgcaac tgatgtgaag cacatcagag
      961 tcatgacgtt caacatccgt tacgacgagc cgcgtgatgg tgcgaatgcg tggccgaatc
     1021 ggaaagagct cgtggccggc atgattcgct ttcataacgc ggacctcgtg ggtgtgcagg
     1081 aagctctcaa gggacagatc gatgatctcg agaaactgct gcccgagtat tcgtggttgg
     1141 gagtgggccg cgccgacggc aaagcgggcg gagagtattc cgcgatcttt tatcgcaagt
     1201 tacggtttaa gagtctcgag agctcgacgt tctggttgtc tgaaacgcca aacgtaccgg
     1261 gcgccggctg ggatgcagcg ttgccgcgta tcgtcacgtg ggccaaattc agagacctca
     1321 cgaccggcaa agtcttcttt catttcaaca ctcacttcga tcatcgtggc gtcaaagccc
     1381 gcaccgaaag cgcgcgactc atgttgagtc gtatcggcca aatggcggcg gcttcgcccg
     1441 tcgtcgtcac cggtgatttc aacttcactg agtccgccga tggatacaag cttctaaccg
     1501 gcaagtcagc actgcgagac gctcgataca tttctcagca cggccatcac ggaccaacgt
     1561 cgacgttcaa cgagttcaag gcacttgtcc ctgacaaaaa gatcgattat gtgttcgtca
     1621 aaggaaacat tcgagtcgtt cagcatggag tactttcaga tacgtgggac ggaaggtt
//
LOCUS       DASWTX010000303         4618 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_198197, whole genome shotgun sequence.
ACCESSION   DASWTX010000303 DASWTX010000000
VERSION     DASWTX010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4618
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198197"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..701
                     /locus_tag="VGD38_04625"
     CDS             <1..701
                     /locus_tag="VGD38_04625"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HEY0727332.1"
                     /translation="IVCDQVAAEARELPRDGILEALDKAAGSSRKRREESLFILSQLT
                     DVPEVVDRIGELLRDPDPQTRSSLIQTVEQARLKQFAPFLNEVMESDPDPFCRGLAIH
                     AAGTLKADENLPTLLRLAERRDDEETWRLIGALQSYATEECRPYLEEWFKNRDSESDR
                     VIAAWGLGKLGDKEAIAYLIRMLDDPDEYGPTHSNPGESLRAAQALCDIHQWPFEWEK
                     SYVAKTAARVTRLS"
     gene            complement(685..1503)
                     /locus_tag="VGD38_04630"
     CDS             complement(685..1503)
                     /locus_tag="VGD38_04630"
                     /inference="COORDINATES: protein motif:HMM:NF013681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-1,2-fucosyltransferase"
                     /protein_id="HEY0727333.1"
                     /translation="MRRIVTFERLGTYGRFANQLFQISGTIGIARRNRFNYAFPPWRN
                     HAALNFGQPDLDVQARFENPLPLYTGARLPEYFIDFGYRKVRLIRSVTLLGYLQSERY
                     FSHCLDEVKFYFRMKEEPPLNDYCAIHWRAGDYGAAPTKYKPRGNPAHPRMDLDYYEP
                     AMALFGSRQKYLVFSDDLAAAKDLFGDRVEYSEGLDYLDDFRLMKRCKHFIISNSSYS
                     LMAAILGDHPEKQVVGPSPWFGGPDAHTLNERDILSPGWHVVHYKTGLITKKAA"
     gene            1629..2126
                     /locus_tag="VGD38_04635"
     CDS             1629..2126
                     /locus_tag="VGD38_04635"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024812.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY0727334.1"
                     /translation="MDFVIDQMKPGDWEQVRSIYLEGIATGHTTFETGAPSWEKWNVG
                     HLQVARLVARTGEKVLGWAALSAVSGRDVYRGVAELSVSVGEASRGKGVGRALLEALI
                     EESERNGIWTLQAAIFPENTASVKLHLRCGFREVGRRERIAKLNGVWRDTLLFERRSK
                     TVGVD"
     gene            2127..2612
                     /locus_tag="VGD38_04640"
     CDS             2127..2612
                     /locus_tag="VGD38_04640"
                     /inference="COORDINATES: protein motif:HMM:NF025502.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4304 domain-containing protein"
                     /protein_id="HEY0727335.1"
                     /translation="MSAETYKRTILTQLHTLLKPMGFRKKGQYFSADKNDTVLFVQLQ
                     SSSKSTKDRLVVTINLGIFSRTVAERLGDTHEPNIVDAHWRERIGRFMPAGTDKWWDI
                     KSERDADLCAAEITSIMGNKALPRMLSLASTEDLKAYWEQGNSTSLTQHMRQEYLKVL
                     Q"
     gene            complement(2615..3688)
                     /locus_tag="VGD38_04645"
     CDS             complement(2615..3688)
                     /locus_tag="VGD38_04645"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0727336.1"
                     /translation="MNWRVVAAIAQKDLIDAIRNRYLLVALLTPLSVALLIRVMVPSI
                     DSMKSSTIVVHDPDRSALVTQLRAVPRIKLVEAPSAEAARAEVDKIDADGAVVVPPNF
                     DADVAADKQPELAVYVNNKKENFEQARFRILVDRQVGSLVQRRPPAKLNWINLHEETG
                     PQAGGEINLSQMLLPLLLLLTFGMTGALVVPLLLVEEKEKRTMDFLLTSPARLSEVIA
                     GKAFTGVVYSVLIAGVLLGLNRDLVGNWALTSLTIMLGLLLIVALGLLMGSLFETTMQ
                     VNTWASLVLLALLAPSFPYPGSPPVLDTAMRFIPTYYFVEALKLSLGGTTSSRMWIYL
                     AVVLACTVVAFFAVTWSLRRQQN"
     gene            complement(3685..4533)
                     /locus_tag="VGD38_04650"
     CDS             complement(3685..4533)
                     /locus_tag="VGD38_04650"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0727337.1"
                     /translation="MNSIEVDGLSRTFNGLRAVDRISFTVEAGEVFGFLGHNGAGKTT
                     TIRMLTGQLRPTAGTARVAGCDITTEQQRLKPLVGVVSENQNLYERMSGRENLAFAAR
                     IYGASPARIDETLEQVDLLDRAKDKVQHYSNGMKQRLLIARALLHRPQIIFLDEPTRG
                     LDPVVAREIRRLVVQLASQGVTIFLTTHYMEEADELCRRIAFLSEGRIVALDTPDNLK
                     LLHGQKTLEATLETGETLTIALDDDAAGKQLQELVSAGRLRTLHSTEATLEEVFIQIA
                     GRGLSE"
BASE COUNT         1052 a         1244 c         1334 g          988 t
ORIGIN      
        1 aaatagtttg cgaccaggtc gccgctgaag ctcgtgaatt gccgcgcgat gggattctgg
       61 aggcactcga caaagcagcc ggctcgagcc ggaagcgtcg cgaggaatcg ctcttcattc
      121 tttcccagct cacggatgtt cctgaagttg tcgatcgcat tggcgaactg ctccgcgacc
      181 cggacccgca gacgcgctcg tcgctgatcc agaccgtcga gcaggctcgt ctcaagcagt
      241 ttgcgccttt cttgaacgag gttatggaaa gtgatcccga tccgttttgc cgtggcctcg
      301 cgattcacgc ggcgggcaca ctcaaagcgg atgagaacct tccgacgttg cttcgcctcg
      361 cggaacgtcg tgacgatgag gagacctggc ggctcattgg cgcacttcag agttacgcta
      421 cggaggaatg ccggccttat cttgaagaat ggttcaagaa ccgggattcc gagtcagacc
      481 gcgtaattgc cgcgtgggga ctcggcaagt tgggcgacaa agaggcgatt gcttatctga
      541 ttcgcatgct tgacgaccct gatgagtatg gaccaacgca ctccaacccg ggcgaatccc
      601 tccgcgccgc gcaagcgctt tgcgatattc atcaatggcc gtttgagtgg gaaaagtctt
      661 acgtcgccaa aaccgcggcg agagtcacgc ggctttctta gttatcaatc cagttttgta
      721 gtggaccacg tgccatccgg ggctcaggat gtcgcgctcg ttgagggtgt gcgcgtccgg
      781 gccgccgaac cagggtgaag gaccgacgac ttgtttctcc ggatgatcgc cgagaatcgc
      841 ggccatcaga ctgtagctgg aattggaaat gatgaagtgc ttgcagcgtt tcattaaacg
      901 gaagtcgtca aggtaatcca gcccctccga atactcaacc cgatcgccaa acagatcctt
      961 cgccgctgca agatcgtcgc tgaacacaag atacttctgc cgagagccga acaacgccat
     1021 cgcgggctcg tagtaatcga ggtccatgcg cggatgggcc gggtttcccc ttggcttgta
     1081 cttcgtcgga gccgcaccgt aatctcccgc tcgccagtgg atcgcacaat agtcattaag
     1141 cggcggctcc tctttcatcc gaaagtaaaa cttcacttca tcaagacagt gcgagaagta
     1201 gcgctcggat tggagataac cgagcagcgt aacgctgcga atcaagcgaa ccttgcggta
     1261 accaaaatcg atgaagtatt cgggcagacg cgcgccggta taaagcggta acggattctc
     1321 gaatctcgcc tgaacgtcaa gatcgggttg tccgaagttg agcgcggcgt ggttgcgcca
     1381 cggcgggaac gcgtaattaa aacgattgcg ccgggcaatc cctatagtgc cgctaatctg
     1441 aaaaagctga ttagcaaacc tgccataagt gccgagacgt tcgaacgtaa cgatccttct
     1501 cataccctga ttgttcgtgg aaaatgccga gaattccggg aaagagttcg tgaacggggg
     1561 accggttcca cggtattatc tccagccgcg cttaaatttc aacttcagaa agcaaggccg
     1621 agacggaagt ggattttgtt attgatcaga tgaagcccgg cgactgggag caggtgcgct
     1681 cgatctatct cgagggcatc gcaaccggcc acacgacatt tgagaccggc gctccgtcgt
     1741 gggagaagtg gaacgtgggc catctgcaag ttgcacgact cgtagcgcga acaggagaga
     1801 aggttttagg ttgggcggcg ctgagcgcgg tgtccggcag agacgtttat cgcggagtag
     1861 cggaactgag tgtttcggtt ggagaagcga gccgaggtaa aggcgttggc cgagctttgc
     1921 ttgaggcttt aatagaggag tcagagagaa acgggatttg gacgctacaa gcagcgatat
     1981 ttcccgagaa cacagcgagc gtgaaattgc atctgcgctg tggctttcgc gaagtcggca
     2041 ggcgcgagcg gatcgcaaag ctcaacggcg tgtggcgcga cacgttactc ttcgagcgcc
     2101 ggagcaaaac cgttggagtc gattaaatga gcgcggaaac ttacaagcga accatactca
     2161 ctcagttgca cactctgctg aagccgatgg gctttcgcaa gaagggtcag tatttttcag
     2221 cggacaagaa cgacactgtt ttgttcgttc agctgcagag cagctcgaaa agcacgaaag
     2281 accggcttgt cgtcacgatt aatctcggga tcttttcgcg tacggttgcg gaaaggctgg
     2341 gagatacaca cgaaccgaac atcgttgatg cgcattggcg agaacgcatc ggacgtttca
     2401 tgcctgctgg aactgacaaa tggtgggata tcaaaagtga acgcgacgcc gatctttgcg
     2461 ccgctgaaat caccagcatc atggggaaca aggcactacc gcgaatgctt agcctggcat
     2521 cgacagaaga tctgaaagct tattgggaac agggaaacag taccagcctg actcagcaca
     2581 tgcgccagga gtatctgaag gtgctgcagt aacatcaatt ctgttgccgt cgcagcgacc
     2641 acgtaactgc aaagaacgca accacggtac acgccaacac cacggctaga tagatccaca
     2701 ttcgtgatga agtagttccg ccgagcgata acttcaacgc ctcaacaaaa tagtaggtcg
     2761 gaataaaacg catcgccgtg tcgagcaccg gcggcgaacc gggataagga aaactcggcg
     2821 cgagcagcgc gagcagcaca agactggccc acgtgttcac ctgcatcgtg gtttcaaaaa
     2881 gactgcccat gagcaagccg agtgcgacga tcaggagtaa gcccagcatg atcgtcagcg
     2941 aggtcaacgc ccagttgccg accagatcgc gattgagacc caacaacact cctgcaatca
     3001 acacgctgta cacgacgccg gtgaaagctt tgcctgcaat cacctcactc aatcgcgccg
     3061 gcgaggtcag caggaaatcc atcgtccgct tttctttctc ttcgaccagc agcaacggca
     3121 ctaccagcgc accggtcatg ccgaaggtca gcaacagcag taacggcagg agcatctggc
     3181 tgaggttgat ctcacctcct gcttgcgggc cggtctcctc gtgaagattg atccagttta
     3241 attttgcggg cggccgccgt tgcaccagtg atccgacctg tcgatccacg aggatcctga
     3301 acctcgcttg ctcgaaattc tcctttttgt tgttaacgta gacggcaagc tccggctgct
     3361 tgtcggcggc tacatccgca tcaaaattcg gcgggaccac caccgcgcca tctgcatcga
     3421 tcttgtctac ttcggcgcgt gccgcttccg ctgacggcgc ttctaccagc ttgatccgtg
     3481 gaactgcgcg taactgcgta acgagagccg aacgatcagg atcgtggacc acgatggtcg
     3541 agcttttcat actgtcgatg ctgggcacca tcacgcgaat gagtagcgca actgacaacg
     3601 gcgtcagcag cgccacgagc aggtaacgat tcctgatcgc gtcgatgaga tccttctgtg
     3661 cgatggccgc aacaactcgc cagttcattc agacaacccc cttccggcta tctgaataaa
     3721 gacttcctcg agcgtcgctt cagtcgagtg caacgttcgc agccgtccgg cgcttaccag
     3781 ttcctgcaac tgtttgccgg cggcgtcgtc atccaaagcg attgtcagag tttcgccggt
     3841 ttcgagtgtt gcttcgagag ttttctgacc gtggagtagc ttgagattgt cgggtgtatc
     3901 gagcgcgacg atgcgtcctt cactgagaaa cgctatgcgg cggcaaagct cgtctgcctc
     3961 ttccatgtag tgagtcgtta gaaagatcgt gacgccctgg cttgcgagtt ggaccacgag
     4021 acgtcgaatc tcacgggcga ctaccggatc cagtcctcgt gttggttcgt cgaggaagat
     4081 tatttgaggg cgatgaagaa gtgcgcgagc gatcagcaag cgttgcttca tgccgttgga
     4141 atagtgctga actttgtctt ttgctcggtc gagcaggtcg acttgctcca gcgtttcatc
     4201 gatgcgtgcg gggctcgcgc cgtagattcg tgcagcgaaa gcgagattct cgcggccgga
     4261 catgcgttcg tagaggtttt gattttcgga aacgacaccg accagcggct tgaggcgttg
     4321 ctgttcggtc gtgatgtcac aacccgcaac tcgagcggtg ccggctgttg ggcggagttg
     4381 gccggttagc attcggatcg tcgtcgtttt gccggctccg ttgtggccca ggaagccaaa
     4441 cacctcccct gcttcaacgg tgaacgagat ccggtccacg gctcgcaggc cgttgaaagt
     4501 gcgtgaaagt ccgtcaactt cgatggagtt catttgtgtg atctcgggct cgccgccact
     4561 catcattcga tacggcggcg agtttggcgt agtagtacgt aaaccggaag actatgtt
//
LOCUS       DASWTX010000304         2176 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_113189, whole genome shotgun sequence.
ACCESSION   DASWTX010000304 DASWTX010000000
VERSION     DASWTX010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2176
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113189"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1045
                     /locus_tag="VGD38_04655"
     CDS             <1..1045
                     /locus_tag="VGD38_04655"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEY0727338.1"
                     /translation="GGLWTNAPDLARYVAFLLSAFPPRDEPERGPVKRSSAREMQQLW
                     RFSPGGAFRSTTDAPLQLNVSGYGYGLGVSQDCRFEFVVGHGGGLPGYGSLMRWLPDY
                     GVGLIAMGNLTYGGFGGLFNDTLNALHRTGALQPRVVKPSPALLKAQADISQLIIKWD
                     DALANRIMADNVSLDTPLETRKSRWQALAKDHGTCRPATTIDPENALRGRWKMECERG
                     WLDVGITLAPTTEPKIQAIGIGPVLPPDAEMTKALDTVVKLLGAWDQKALEAIAAPDL
                     NVEKVRRQVAAASAWGSCKVGETLGGNGKRNSAIRLTCDRGPLMARIALDATTQKLTN
                     VDLVPLREQRCVP"
     gene            complement(1098..1892)
                     /locus_tag="VGD38_04660"
     CDS             complement(1098..1892)
                     /locus_tag="VGD38_04660"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HEY0727339.1"
                     /translation="MRTFVVGDIHGRCAQLLNLLDMLPRDPQNDTLVFLGDLIDRGAD
                     APGCVDHIRKMCRENPERVICLRGNHEQMLMDFLEGQSSIWLTPVTGGERTFEQYTLH
                     PVRAQTEADLEEMRRLFEEKFPPEHLEFLQSLPFYYEDEHAIYVHAGLDEGKHPSESS
                     PMSLLWLRDMDFYKNYRGKPCVFGHTPTPLLPLRGRLGRHGIYISHSAVGLDTGYNHQ
                     SPLSCLSLPDFNLYQTFADGREETHQITSFIPEQLREMQRRAGLSS"
     gene            complement(1889..>2176)
                     /locus_tag="VGD38_04665"
     CDS             complement(1889..>2176)
                     /locus_tag="VGD38_04665"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0727340.1"
                     /translation="AQGQHTKANEQLTQKVRQVAEGDYDISYWLASAYLLQGRQVEAL
                     RWLETAIRLGNQNYRWFESDPNWTDMHEDPRFVELMTGIKSKKPAARDQTA"
BASE COUNT          464 a          598 c          654 g          460 t
ORIGIN      
        1 gggcggtctg tggaccaacg cgcccgatct cgcacgttac gtcgcgttcc tcttatccgc
       61 atttccgccg cgcgatgaac cggagcgtgg tccagtcaaa cgcagcagcg cgcgcgagat
      121 gcaacagctc tggcgcttct ctcccggcgg tgcatttcgt tcgactaccg acgcgccgtt
      181 gcaactcaac gtttccggtt atggatatgg actcggggtt tcgcaggatt gccgctttga
      241 attcgtcgtc ggacacggcg gcggtttgcc gggttacgga tcgttgatgc gctggttacc
      301 ggattacggc gtcggtctga tcgcgatggg caatctcacc tatggcggct ttggtggact
      361 cttcaacgac acactcaatg cgcttcatcg cacaggtgcg ttgcagccgc gcgtagtgaa
      421 accgtcgcct gcactgctga aagcgcaagc agatatttcg cagttgatca tcaagtggga
      481 cgatgcgctc gcgaatcgca tcatggctga taacgtgtct cttgatacgc cgttggaaac
      541 gcgcaagagc cgttggcagg cgctcgccaa ggatcacgga acgtgccggc cggcaacgac
      601 gatcgatcct gagaacgcgt tgcgtggaag gtggaaaatg gagtgcgaac gtggctggct
      661 cgacgtcgga atcacattgg cgccgacaac ggagccgaag attcaagcca tcggcatcgg
      721 cccggttctg ccgccggacg ccgagatgac gaaggcgctc gacacggttg tgaaactgct
      781 tggcgcgtgg gaccagaagg cgctggaagc gattgcggcg ccggatttga acgtcgaaaa
      841 agtgcggcgg caggtggcag cggcgtcggc gtggggcagt tgcaaggtgg gtgagacgct
      901 tggcggaaac ggcaagcgca acagcgcgat tcggttgacg tgtgaccgtg gtccgcttat
      961 ggcgcgaatc gcgttggacg cgacgacaca gaagttgacg aatgtcgatc tggtgccgtt
     1021 gcgcgaacag cgttgcgtgc cttaagcgtg aggcctaagg gaagggattt aaggccgaaa
     1081 ggcaaaagca aatttaatta actagaaagc ccggcgcggc gttgcatctc acgcaactgc
     1141 tcgggaatga aggacgtgat ttggtgagtc tcttcgcggc cgtcggcgaa ggtttggtag
     1201 agattgaagt cgggtaaaga aagacagctc aacggcgatt ggtggttgta gccggtatcg
     1261 agtccgactg cgctgtgaga aatgtaaatg ccgtgccttc cgagccggcc gcgcaaaggc
     1321 agtagcggcg tcggcgtgtg accaaacacg cacggcttac cgcgatagtt tttgtaaaaa
     1381 tccatgtcgc gcagccacaa gagcgacatc ggcgaactct cactcggatg cttgccttca
     1441 tccaatcccg cgtgaacgta gatcgcgtgc tcgtcctcgt aataaaacgg cagactctgc
     1501 aaaaactcga gatgttccgg cggaaacttt tcttcaaaca aacgccgcat ctcctccagg
     1561 tccgcttccg tttgcgcgcg caccggatgc agcgtgtact gctcaaacgt tcgctcgcca
     1621 cccgtcaccg gcgttaacca gatcgacgac tgaccttcga gaaagtccat caacatctgt
     1681 tcgtgattgc cgcgcaaaca gataacgcgc tccggattct cacggcacat cttgcggatg
     1741 tggtccacac aacccggcgc atcggcgccg cggtcgatca ggtcgccaag aaaaaccaac
     1801 gtgtcgtttt gaggatcgcg cggcagcata tcgagcagat tgaggagctg cgcgcatcgg
     1861 ccatgtatgt cgccaacgac aaaagttctc atgcagtctg gtccctggct gccggctttt
     1921 tactcttgat tcccgtcatc aattccacga aacgcggatc ttcgtgcatg tcagtccagt
     1981 ttggatccga ctcaaaccaa cgatagtttt ggttgccgag tcgaatcgcc gtttccaacc
     2041 aacgcaaagc ctcgacctga cggccctgca agagataagc agacgccagc cagtaggaga
     2101 tatcgtaatc gccttctgcc acctggcgca ccttttgtgt taactgttcg ttggcttttg
     2161 tgtgttgacc ttgtgc
//
LOCUS       DASWTX010000305         2991 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_395077, whole genome shotgun sequence.
ACCESSION   DASWTX010000305 DASWTX010000000
VERSION     DASWTX010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2991)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2991)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2991
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_395077"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..196
                     /locus_tag="VGD38_04670"
     CDS             <1..196
                     /locus_tag="VGD38_04670"
                     /inference="COORDINATES: protein motif:HMM:NF012708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEY0727341.1"
                     /translation="EAKVSRRHARITLSNGQYFLEDLGSTNGTFINRGKRLPPGQRQA
                     LCDGDEIIVGKTFLRFHIVK"
     gene            334..1887
                     /locus_tag="VGD38_04675"
     CDS             334..1887
                     /locus_tag="VGD38_04675"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY0727342.1"
                     /translation="MHITQPPPEDEPQAPVAEPEPERPISAAIGAEPAPVSSASLGGS
                     YTDNVHLETTATPRGTGGKRASVKQLEPNTILNHRYEIVRRIGGGGMGAVYLAKDRNL
                     GDAPRAVKEMVESHLDPMQHEKAIGDFKRESLLLTSLEHPCIPTIYDYFYDEALSRFY
                     LVMKYISGGDLASRMRAAIGGKIDEKTVTDWGMQVADVLDYLHSRPKPIIYRDLKPAN
                     LMIDGNTGRVMLIDFGIARWVSQQEKGVTAVGTMGYAPPELFSGRVQPASDVYSLGAT
                     MFHLLTGADPQDNPLLIFDFSKNPRPRQINPAISTEMEQILMRSVEYKPEDRFRTAGE
                     LRNELVRHLENLMTGRVNYGVPAPNIGSETTQMQTVYCGFCGGRIAADDVFCAHCGAR
                     QPLVPAGQSAMLHTVRPTAKLVVTGTTELDASFILQKDSNLLGRTDPHSNIFPEIDLS
                     RFDPETKVSRRHARIWLEGETFLVEDLGSVNGTVINDSVRLAPRQPRVLDSGDKLRVG
                     ETTLHFLVG"
     gene            1957..2391
                     /locus_tag="VGD38_04680"
     CDS             1957..2391
                     /locus_tag="VGD38_04680"
                     /inference="COORDINATES: protein motif:HMM:NF018028.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEY0727343.1"
                     /translation="MTRTHLGVPFPLRCGAFLIDYIVLVSLVVLGTLFARMLGGGARA
                     AGSSAETAAIALAIVVALFNLGLLPGLTGLTLGKWATGLRIQRVDSGNPGIGRALLRH
                     FVGYPLSLITLGIGFLMAGFTVHGRGLHDMIAGTVVVREGSL"
     gene            2417..>2991
                     /locus_tag="VGD38_04685"
     CDS             2417..>2991
                     /locus_tag="VGD38_04685"
                     /inference="COORDINATES: protein motif:HMM:NF028007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEY0727344.1"
                     /translation="MTELIVKYPDRAPDHFPLGRLRITIGRSARNDLCIPDPFASRVH
                     AEVRREGEEYVLQDLGSANGTLYNGATVDGAVHLTSGGRIQIGETEIIFDDGSYNSSM
                     GATMITDNTNSLPEATIALASSDRTTSGLLEAIEGARTQPEEIATTSTDHKTKHGDLL
                     ALISKVGITLLASATLNETLEQIVSLVFEAVP"
BASE COUNT          625 a          875 c          866 g          625 t
ORIGIN      
        1 cgaagcaaaa gtctcgcgcc ggcacgctcg catcactttg agtaatggtc agtatttttt
       61 agaagatctg ggatcgacga acggtacgtt catcaatcgt ggcaagcgat tgccccctgg
      121 acagcgtcag gcgctttgtg acggcgacga aatcattgtc ggaaaaacgt tcctgcgctt
      181 ccacatagtc aaatagacca aatgcccgaa tgcaatgcat gcggcgcccg cgtctcgccc
      241 ggtgaacact tttgcgggaa ctgcggtacg cagcagattc caagctcccc tgaactgaaa
      301 actgtcgctg ccaatctcgg cgaggacggc gaagtgcaca tcacgcagcc gccgccggaa
      361 gacgagccac aggctcccgt tgccgagccc gaacccgaac gaccgatctc ggccgccatc
      421 ggcgctgaac cggcgccggt ttcttccgct tcactcggcg gctcttacac ggacaacgtt
      481 catctcgaaa cgaccgcgac tccgcgcggc accggcggaa aacgcgcttc tgtcaaacaa
      541 ctcgaaccca acacgattct caatcatcgc tacgagatcg ttcgccgcat cggcggcggc
      601 ggcatgggcg ccgtttatct cgcgaaagat cgcaatctcg gcgacgcgcc acgcgcggta
      661 aaagagatgg tcgagtcgca tctcgatccg atgcaacacg aaaaggcgat tggcgatttc
      721 aaacgcgagt cgctgctgct gacgtcactc gaacatccct gtatcccgac catctacgac
      781 tatttctacg acgaagcatt gagccgtttt tatctcgtga tgaaatacat ctcgggcggc
      841 gatctcgctt cgcgcatgcg cgccgctatc ggcggcaaga tcgacgagaa gactgttacc
      901 gattggggaa tgcaggtcgc cgacgtgctc gactatctcc actcgcggcc gaaaccgatc
      961 atctatcgcg atctcaaacc cgcgaatttg atgatcgacg gcaacaccgg acgcgtgatg
     1021 ctgatcgact tcggcatcgc acgctgggtt tcgcaacagg aaaagggcgt cactgccgtc
     1081 ggcacgatgg gctacgcgcc gccggagctt ttcagcggcc gcgtgcagcc ggcgtcagac
     1141 gtttacagtc tcggcgcgac gatgtttcac ctgttaacgg gcgccgatcc gcaggacaat
     1201 ccgctgctga ttttcgactt ctcgaagaac ccgcgtccgc gtcagatcaa tcccgcaatc
     1261 tcgaccgaga tggaacagat cctgatgcgc tcggtcgagt acaaaccgga agatcgtttc
     1321 cgcaccgcgg gagaactgag aaacgagctg gtgcggcatc tcgagaactt gatgacggga
     1381 cgcgtcaatt acggcgtacc cgcgccgaac atcggcagcg agaccacgca gatgcagacg
     1441 gtctactgcg gtttctgcgg tggacgtatt gctgccgacg atgttttctg cgcgcattgc
     1501 ggcgcgcgcc agccgctcgt gccggcgggt cagagcgcga tgctgcacac agtgcggcca
     1561 acggcgaagc tcgtcgtgac cggaacgacc gagcttgacg cttcgttcat actgcagaaa
     1621 gacagcaacc tgctcggacg cacggatcca cactcgaata tctttcccga gatcgatctg
     1681 tcgcgattcg atccggaaac gaaagtatcg cgccggcacg cacgcatttg gctcgaaggc
     1741 gaaacatttt tggtagaaga tctcggctcg gtgaatggaa ctgtaattaa cgactccgtc
     1801 agacttgcgc ccagacaacc tcgtgtactc gacagcggcg acaaactccg tgtcggggaa
     1861 acgacgttgc atttcctggt ggggtagaag atttccttgg catcagtgtc taaatacgca
     1921 ggaaaacccg gggcagcccc gccacggagg ccacggatga cccggactca tctcggcgtg
     1981 cctttccctc tccggtgtgg cgcgttcctg atcgactaca ttgtgctcgt ttcgctggtc
     2041 gtattgggta ccctttttgc gcgtatgctt ggtgggggtg cgcgcgcggc cggaagttcg
     2101 gcggagactg ccgcgatagc gctggcgatc gtggttgctt tgttcaatct gggtctgttg
     2161 cctggcctaa cgggtctgac gctcgggaag tgggcgacgg gtttgcgcat tcaacgcgtt
     2221 gattcgggaa accctggaat cggacgcgcc ttgttgcgcc actttgtggg ttatccgctt
     2281 tcgttaatca cgctggggat tggtttcttg atggcgggct tcaccgtgca tggccgtggc
     2341 ttgcacgata tgattgccgg caccgttgtt gtacgtgaag gttcgttata gttggaaagc
     2401 gattagtgtc tgagaaatga ccgagctaat agttaaatac cccgaccgtg cccctgacca
     2461 ttttccgctc gggcgcttgc gcatcaccat cggacgttcc gcgcggaacg atctctgtat
     2521 tccggatccg tttgcttctc gtgtgcacgc agaggtgcgc cgtgaaggtg aagagtatgt
     2581 gttgcaggat ctcggctccg cgaatggaac gctttacaac ggcgccactg ttgacggcgc
     2641 cgttcacctg acttccggcg gccgcattca gatcggcgag accgagatca tctttgacga
     2701 cggctcttat aactcgagta tgggcgccac gatgatcacc gacaacacca actcgcttcc
     2761 cgaagcgacg attgcactcg cttcaagcga tcggaccacg tcgggattgc tcgaagcgat
     2821 cgaaggcgcg cgtacgcaac cggaagagat cgccaccacg tcgacggacc ataaaaccaa
     2881 acacggcgat ctgctcgcgc tgatcagcaa agtgggcatc acgctgcttg cttcggcgac
     2941 gcttaatgaa acgttggaac agatcgtttc gctggtgttt gaagcggtgc c
//
LOCUS       DASWTX010000306         2668 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_395082, whole genome shotgun sequence.
ACCESSION   DASWTX010000306 DASWTX010000000
VERSION     DASWTX010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2668
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_395082"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..255)
                     /locus_tag="VGD38_04690"
     CDS             complement(<1..255)
                     /locus_tag="VGD38_04690"
                     /inference="COORDINATES: protein motif:HMM:NF015882.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme-like NAD(P)-binding protein"
                     /protein_id="HEY0727345.1"
                     /translation="MKILGSRLEKQRILILRAGSSAIGICDQIVAAMVQSGTAEHETK
                     QLLWLVDSKGLVHSGRNDLESAKQKYAQPVERFAASSFSDV"
     gene            complement(252..1037)
                     /locus_tag="VGD38_04695"
     CDS             complement(252..1037)
                     /locus_tag="VGD38_04695"
                     /inference="COORDINATES: protein motif:HMM:NF012608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727346.1"
                     /translation="MSSVVATRSDCVIETGLTGQLLLDNPLLNKGSDFPEDERREFGL
                     LGLLPPHCSTVEEQLARAYENYKRKESDLERYVFLTALQDRNETLFYRLLQEHISEMM
                     PIIYTPTVGEGCRKYSHVFRRPRGLYISYPHRGDIRSILDNAPSAQPEVIVVTDGERI
                     LGLGDLGVGGMGIPIGKLSLYSACAGVHPKATLPIMLDVGTDNPELLNDPLYLGWRHP
                     LRARRGVRRLHRSFRRVTAIDCAVSTTTFREPARSRSLDSSRR"
     gene            complement(1092..1559)
                     /locus_tag="VGD38_04700"
     CDS             complement(1092..1559)
                     /locus_tag="VGD38_04700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727347.1"
                     /translation="MRASTHKQRVGLAELTFFLIGIILLLLLAVVAKGQQPVYNQYRG
                     VRLGMTAAEARAKLGEPVMKTDEQDFYVLSPNESTQIVYDGSHKVVTISTDYVGGVGA
                     PDYRTVVGEGALLERPDGSLFRMVQYRSAGMWVSYNKSAATAPMVTVTMQVMK"
     gene            complement(1561..2070)
                     /locus_tag="VGD38_04705"
     CDS             complement(1561..2070)
                     /locus_tag="VGD38_04705"
                     /inference="COORDINATES: protein motif:HMM:NF012575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEY0727348.1"
                     /translation="MDHDDEGGTNRLPCTSRRVFCAELLSTGLILAAPGVTKAVAGQG
                     SMVAFPPRKIEGAELLLPGSSLYFNYPTRNDPAVLLRVSENEYSAYSRRCTHAGCSVD
                     YDPRSRYLMCPCHRGAFEPRMGRAMFGPPRWPLDEIVLEMRADGHLWAVGKYSRNMDT
                     ITQNLRGGD"
     gene            complement(2090..2389)
                     /locus_tag="VGD38_04710"
     CDS             complement(2090..2389)
                     /locus_tag="VGD38_04710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727349.1"
                     /translation="MTVQGIELKGKYLFVHDETAMNRGDACTYIYKGEVEKRDKLVTS
                     FHCIHVERAKATSFIVRSRETAAGTLELFEFQFAGETASHGVPVPSNIAVIPLVN"
BASE COUNT          563 a          765 c          718 g          622 t
ORIGIN      
        1 cacgtccgaa aaactcgaag cggcaaatct ctcgacaggc tgagcgtatt tctgtttggc
       61 gctttccaaa tcattgcgac cgctgtggac caggcctttg ctgtcgacca gccaaagtag
      121 ttgtttcgtt tcgtgctccg cggttcccga ctggaccatc gcagcaacaa tctgatcgca
      181 aatgccaatc gccgatgaac ccgctctgag gatcaggatt cgttgtttct cgagtcgcga
      241 tcccaggatt ttcatcgccg cgaggagtcc agcgaccgtg accgcgccgg ttccctgaat
      301 gtcgtcgttg aaactgcaca atcgatcgcg gtaacgcgac gaaagcttcg atgaagtcgt
      361 cgtactcctc gcctcgcacg aagagggtgc cgccaaccca aatacagtgg atcgttcaac
      421 agttcgggat tgtcagtccc gacgtcgagc atgatgggaa gcgttgcctt cggatgaact
      481 cctgcgcatg cagaataaag cgacagcttg ccgatcggga tgcccattcc tccaacgccc
      541 aggtctccca atccgagtat ccgctctccg tcagttacga cgatgacttc gggctgcgct
      601 gaaggagcgt tgtcgagtat cgaccgaatg tcaccgcggt ggggatacga gatgtacaaa
      661 ccgcgcggcc ggcgaaaaac gtggctgtac ttccggcagc cttcaccaac cgtcggcgtg
      721 tagatgatag gcatcatctc gctgatgtgt tcctgcaaca gccgatagaa gagcgtttcg
      781 ttgcggtcct gcaatgccgt cagaaacacg tagcgctcga gatcgctttc ctttcgcttg
      841 tagttttcgt aagcgcgagc gagttgctct tcgactgtgg aacagtgcgg cgggagcagc
      901 cccaaaagcc cgaactcgcg ccgctcatct tcgggaaagt cactgccctt gttgagcaac
      961 ggattgtcga gcagtagttg tccagtgaga ccggtttcga ttacacaatc acttcgcgtt
     1021 gcgacaacag aactcattgg atccacctgt tttagagctg cttccggatt cgaatcggcc
     1081 aaacgcgacg gtcatttcat gacctgcatc gtgaccgtga ccatcggcgc ggtcgcggcg
     1141 ctcttgttgt acgacaccca cattcccgcc gaccggtact gcaccattct gaacaacgaa
     1201 ccatcaggcc gttccagcaa tgcgccctcg ccgactacgg ttctgtaatc gggcgcgccg
     1261 acgccgccga cgtaatcggt agaaattgtc acgaccttat gcgacccgtc gtaaacgatc
     1321 tgcgtgcttt catttggcga aagaacatag aagtcctgtt cgtcggtttt catcaccggc
     1381 tcgccgagtt ttgcgcgcgc ttctgcggcc gtcatgccga gacggacgcc acgatattgg
     1441 ttgtagacag gctgctgccc tttggcgaca acggccagta gcaacagcaa aatgattccg
     1501 atcagaaaga acgtcaattc agcaaggcca actctttgtt tgtgtgtgct ggctctcatg
     1561 tcagtcacct cctctgaggt tttgtgtgat cgtgtccatg tttctcgagt acttgccgac
     1621 ggcccaaagg tgtccatcgg cgcgcatctc gaggacgatc tcatcgagcg gccaacgtgg
     1681 tggaccaaac atcgcccgcc ccatgcgtgg ctcgaatgcg ccccgatggc atggacacat
     1741 cagatatcga ctccgcggat cgtaatccac ggaacacccg gcatgcgtgc atctgcggct
     1801 gtaggcgctg tactcgtttt cgctcacgcg caacagcaca gccggatcat ttctggttgg
     1861 gtagttgaag tagaggctgg atcccggcag caatagttcc gcgccctcga tctttcttgg
     1921 cggaaacgca accatcgacc cctgacccgc cacagctttc gtgacgccgg gtgcggccag
     1981 gatcagcccg gttgataaca gttcggcgca gaaaacgcgt cgcgaggtgc atggaagtct
     2041 gttagtgcca ccttcgtcat cgtggtccat cgcgcacttc ctcgctaact caattcacta
     2101 gcggaatcac ggcgatgttt gatggaacgg gtacgccgtg cgatgcggtt tctccggcga
     2161 actgaaattc gaatagttct aaagtacccg cagcggtctc acgagatcgc acgatgaagc
     2221 tggtcgcctt cgcgcgttcg acgtggatgc agtgaaatga agtgaccagt ttgtcacgct
     2281 tctcgacttc acctttataa atgtaggtgc atgcatcacc acgattcatc gctgtttcgt
     2341 catgcacaaa caggtacttg cccttcagct caatgccttg aactgtcacg ggtctcgtga
     2401 actctgttac tgcggtgcgt ttttgagtgt tagttgcggc tgtggtgttc catgacacac
     2461 tgccgagtat cagagcgcaa agtaccaccg aaacgaaaac cagggttttc atgactctct
     2521 cctctctctt aggggccaga tccatatcgc ggcccacatg taacgttgcc gagtgcaacg
     2581 tacgttccag cggacgatct gtaagatttg ttggagattt cagcgacctg ggccaacgct
     2641 actggggaaa ctttcgatgc tgtgcgtg
//
LOCUS       DASWTX010000307         1626 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_69839, whole genome shotgun sequence.
ACCESSION   DASWTX010000307 DASWTX010000000
VERSION     DASWTX010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1626
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69839"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..816
                     /gene="guaA"
                     /locus_tag="VGD38_04715"
     CDS             <1..816
                     /gene="guaA"
                     /locus_tag="VGD38_04715"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: protein motif:HMM:NF000848.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEY0727350.1"
                     /translation="RQPCIFVDNGLLREGEFESTLTLLRQSMKLNICGVSAGNQFLEA
                     LRGVTDPEQKRKQIGKVFIDVFDAEARRLGDVGYLVQGTLYPDVIESVSVRGPSAVIT
                     SHHNVGGLPEKMNLKLIEPLRELFKDEVRLIGRELGVPEEILGRHPFPGPGLAVRIIG
                     EVTEEKIRLVQAADRILDEELRLAELYNSVWQAFPVLLPVSTVGVMGDERTYERVIAI
                     RAVTSVDGMTADWARLPHDLLGRVSSRIVSEIRGVNRVVYDISSKPPSTIEWE"
     gene            819..>1626
                     /locus_tag="VGD38_04720"
     CDS             819..>1626
                     /locus_tag="VGD38_04720"
                     /inference="COORDINATES: protein motif:HMM:NF014826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HEY0727351.1"
                     /translation="MPDRQFVHLHLHTDYSLLDGAIQIKPLSNRVAELGMQACAMTDH
                     GNMYGAISFYNAMKNNGVKPIIGCETYITRGSRKEKAASAPGEKANFHLILLAQNYEG
                     YQNLVRLTSKAYTEGFYYKPRIDKELLAEHSKGLIALSACMSGVPSAMLAQEKCDEAA
                     KAAHEFEEILGKGNYFLEIQEHGLEPQKRIRKSLVELSKRTGVPLVATNDAHYLMPDD
                     ARAHDVLLCIGSGKTVNETNRLRYASPNFYVRSPEEMWRIFGDELPEVLTR"
BASE COUNT          362 a          428 c          492 g          344 t
ORIGIN      
        1 cgtcagcctt gtatcttcgt ggataacggt ctgctgcgcg aaggtgagtt tgagtcgaca
       61 ttgaccctct tgcgacagag catgaaattg aatatctgtg gtgttagtgc aggaaatcag
      121 tttctcgaag cgctgcgtgg cgtcaccgat ccggagcaga agcggaaaca gattggaaag
      181 gttttcatcg acgtcttcga cgcagaggcg cggcgtttgg gagatgtcgg ttacctggtc
      241 caggggacgt tgtatccgga cgtgatcgaa tccgtctcgg tgcgtggtcc gtcggcagtg
      301 atcacgagtc atcacaacgt cggcggtctg ccggagaaga tgaatctcaa gctgatcgag
      361 ccgctgcgtg agttgttcaa agacgaagtg cggctgatcg gacgcgagct gggcgtgccg
      421 gaagagatac tcgggcgtca tccgtttccc ggaccgggat tggccgtgcg catcatcggc
      481 gaagttacgg aagagaagat tcgtctggtc caggctgctg accgaattct cgacgaagag
      541 ttgcgtctcg ccgagttgta caactcggtc tggcaggcgt ttcccgtgct gctgccggtt
      601 tcgactgtcg gcgtcatggg cgacgagcgc acctacgaac gcgtgatcgc gattcgcgcc
      661 gtgacgagtg ttgacggtat gacggccgac tgggcgcgtc tgccacacga tctgctcggg
      721 cgcgtttcga gcaggatagt ttcagagata cgcggtgtta atagagttgt ttacgacatc
      781 agttccaagc caccatcaac catcgaatgg gaataaggat gccggatcgt caattcgttc
      841 atctacatct tcatacggac tacagtcttc ttgacggcgc aattcagatc aaaccacttt
      901 ccaatcgtgt agccgaattg ggtatgcagg cgtgtgccat gaccgaccat ggcaacatgt
      961 acggcgcgat ctctttctac aacgcgatga agaacaacgg cgtgaagccc atcatcggtt
     1021 gtgagactta catcacgcgc ggcagccgca aggaaaaagc cgcgagcgcg ccgggcgaga
     1081 aggcaaactt tcatctgata ctgttggcgc agaactacga gggttatcag aacctcgtgc
     1141 gtctcacatc gaaggcttac acagaagggt tctattacaa gccacgcatc gacaaagaac
     1201 tgctcgccga gcacagcaaa gggttgatcg ctttgtctgc gtgcatgtcc ggtgtgccgt
     1261 ccgcgatgct cgcgcaggag aagtgtgacg aggcggcgaa ggcggcgcac gagtttgaag
     1321 agatactcgg gaaagggaat tacttcctcg agatccagga gcacggcctc gaaccgcaga
     1381 aacgcattcg caagtcgctc gtcgagttgt cgaaacgaac aggcgtgccc ctcgtcgcaa
     1441 cgaacgacgc gcactacctg atgcccgacg acgcgcgcgc tcacgacgtt ctgctctgca
     1501 tcggttcagg caagaccgtt aacgagacca atcgcctgcg ttacgccagt ccaaattttt
     1561 acgtgcgctc gcctgaggaa atgtggcgca tctttggcga cgagctgccc gaggtgctga
     1621 cccgaa
//
LOCUS       DASWTX010000308         2654 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_26726, whole genome shotgun sequence.
ACCESSION   DASWTX010000308 DASWTX010000000
VERSION     DASWTX010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2654
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26726"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            286..1545
                     /locus_tag="VGD38_04725"
     CDS             286..1545
                     /locus_tag="VGD38_04725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727352.1"
                     /translation="MKVTVSSPAEIRIRIESLSPAREWSFRNAYGGVLGLAERVEQFR
                     ALGAGGTDLGVKKITSGEFRAHVGAEAIEYVVKLARPSAADVAHVSWIAGESGFLVPA
                     DLLPQQLTDVLVEFSLPSGWTIHSTIDADAQGRYRIPKPENAVFFVGRGLRRQAKTVD
                     DVVIDAVISGAWSFKDATILKAATKVLEKYRALTAFKLKAKTAVMIAPLPFATGKVKW
                     LAETRGSTVVLLMDPSAKISNWTGQLGIIFTHELLHLWVPNSLAFEGDYDWFFEGFTL
                     YTALVTALDLKFINLKEYLATLERVYDAYLSRADDLSLIEASERRWTGGNAAVYDKGM
                     LVAFLYDLAIKRDSRGKLSLGSLYRNLFARSAAQPANGNDVIIQLLSSTPAGAELAKS
                     YIAGKQELDLKPLFADQKQLLKSLYYR"
     gene            1548..>2654
                     /locus_tag="VGD38_04730"
     CDS             1548..>2654
                     /locus_tag="VGD38_04730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727353.1"
                     /translation="MYIRLFKTSAVLLLPVILLGCQTLASKNSTGVVVARRAQIRSST
                     AVVAADLLQVNRGDVVDILDSTDVADPSDNTRKERWLRVKARDEDTTEGWIEARNVMP
                     EDVLEESRKLAEQDKEIPAQASGQLRASSNLRLTPDRSGNENIMMRLDSGSSFEIVGW
                     KRVPKPKSSEAIETDVAPKAGSVQQNSARAGRQSDQEPEEEESNELWYKVRLSPNASP
                     APSGWIYGKQVELAVPSDIIFYRTGREFVAWQRLDGDKDSSDSKDGAREAKPGSWMIL
                     EKSSANRQQGVDEPDFDRIYVLGYDKRNQEHYTAYRSPDLRGYLPARIDGQGDNKTFI
                     IRLQEQEGGEVKEVRYSVYKDARGVLRVNAPNLGT"
BASE COUNT          586 a          666 c          852 g          550 t
ORIGIN      
        1 cgcgcttgcg ccgttctctg cgggcactat gcggccgtgg cggtgagccg cctcgacggt
       61 cgtgccgtag agaataaaga cgaccagcaa caggtttagc caacgcgaaa acgtggcgcc
      121 ctggtttttg gttaaagcga acatgctggt ccgtactggt tgtgttagat tcaaaggggt
      181 ggaggacttg tactgagagc agtctgcaaa acgcaattca gcatcgtggt tttgggcctt
      241 tgctttggtg tctttggcgc gattaagggt gcggccaagc cggaggtgaa ggtcacagta
      301 tcctcaccgg ccgagataag gattcggatc gagtcgctgt cgccggcgcg cgagtggtcg
      361 tttcgaaacg cgtacggggg agtgctgggg ttagcggagc gggtcgaaca gtttcgcgcg
      421 ctcggcgcgg gcggaacgga tctcggcgtg aagaagatca cgagcggcga gtttcgggcg
      481 cacgtgggcg ccgaggcgat cgagtacgtt gttaagcttg cgcggccgag tgctgcggat
      541 gttgcgcacg ttagttggat cgctggcgag tcggggtttt tagtgccggc ggatctattg
      601 ccgcaacagc tcacggatgt tctggtcgag ttctcacttc cttccggttg gacaatccat
      661 tcgacaatcg acgctgatgc gcagggcagg tatcggattc caaagccgga gaacgcggtc
      721 ttttttgttg gacgaggatt gcgcagacaa gcgaagactg ttgacgacgt cgttattgac
      781 gcggtgatca gtggtgcgtg gtcgttcaaa gacgcgacga tcctgaaagc ggcgacgaag
      841 gtgttggaaa agtaccgcgc gttaacggcg ttcaaattga aggcgaaaac agcagtgatg
      901 attgcgccgt tgccgttcgc tacgggcaag gtcaaatggc tcgcggaaac cagagggtct
      961 accgtggttc tgttgatgga tccgtcggca aagatctcga actggaccgg acagctcggc
     1021 atcatcttca cgcacgagtt gctgcacctg tgggtgccga actcgttggc gttcgagggc
     1081 gattacgact ggttcttcga aggcttcacg ctttacaccg cgctagtcac cgcgttggat
     1141 ctgaagttca ttaacttaaa ggaatatttg gccacgctcg agcgtgttta cgatgcgtat
     1201 ctctcccgcg cggacgacct ttcgctgatc gaagcatctg aacgacgttg gaccggcggc
     1261 aacgcggcgg tttacgacaa agggatgctg gtggcgtttc tgtacgacct ggcgatcaag
     1321 cgcgactcgc gcgggaagtt gtcgctcgga agtctttacc ggaacctgtt tgcccgttcg
     1381 gcggctcaac ccgcgaatgg aaatgacgtt ataatccagt tgctgagttc gactccggcc
     1441 ggcgcagagc tggcgaagag ttacattgcg ggaaaacagg agcttgatct caaaccgctt
     1501 ttcgccgacc agaagcagct attgaagtca ctttattacc gctagatatg tacatcagac
     1561 tttttaagac cagcgcagtt ttacttcttc ccgtgatact gctcggctgt caaacgctcg
     1621 cgtcgaagaa cagcaccgga gtcgtcgtcg cacggcgcgc gcagattcgc agttcgaccg
     1681 ctgtggtcgc ggccgatctg ctgcaagtca accgtggcga cgtcgtcgac atactcgatt
     1741 cgacagacgt tgccgatccg agtgacaaca ccagaaaaga acgctggctg cgcgtcaaag
     1801 cgcgtgatga agacacgacc gagggctgga tcgaagcgcg caacgtgatg cccgaagacg
     1861 tgctcgagga atcgcgaaaa ctcgccgagc aggacaaaga aattccggcg caggcgagcg
     1921 gtcagcttcg cgcgagctca aatttgcggt tgacgcccga tcgcagcggc aacgaaaaca
     1981 tcatgatgcg gctcgacagc ggttcgagtt ttgaaatcgt gggttggaag cgtgtgccga
     2041 agccgaagtc ttcggaagcg atcgagaccg acgtggctcc gaaagccggc agcgtgcaac
     2101 agaactccgc gagagcggga aggcagagtg accaggagcc tgaagaagaa gagtcgaacg
     2161 agctttggta caaggtgcgg ctttcgccaa atgcttcgcc tgcgccttcg ggttggattt
     2221 acggcaaaca ggtcgagctc gccgttccga gtgacatcat cttttatcgc accgggcgcg
     2281 agtttgttgc gtggcagcgt ctcgatggcg acaaggacag cagcgacagc aaagacggcg
     2341 cgcgcgaagc aaagccggga agctggatga tactcgagaa gagcagtgcg aaccggcagc
     2401 agggcgttga tgagccggac ttcgatcgca tctacgtgct tggttacgac aaacgcaatc
     2461 aggagcacta cacggcttat cgcagtcctg acttgagagg ctatttgccg gcgcggatcg
     2521 acggacaagg agataacaag acttttatca tccggctgca agagcaagag ggcggggaag
     2581 tcaaagaggt gcgctacagt gtttacaaag acgcgcgcgg agttttgagg gttaatgctc
     2641 ctaacctcgg cact
//
LOCUS       DASWTX010000309         1573 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_133455, whole genome shotgun sequence.
ACCESSION   DASWTX010000309 DASWTX010000000
VERSION     DASWTX010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133455"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..495)
                     /gene="lexA"
                     /locus_tag="VGD38_04735"
     CDS             complement(<1..495)
                     /gene="lexA"
                     /locus_tag="VGD38_04735"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: protein motif:HMM:TIGR00498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HEY0727354.1"
                     /translation="MPITAKQRRVYEFIKRYIESNDEPPTIAEIGRHFQISSSASVHG
                     IITALEREGLIKKTPNISRGIQIVKQPPPDDDDRGEIPLLGTVAAGQPIEAILNYDTI
                     AVPRDLQGRGRNFALRVRGDSMIEDNIQDGDIIIVTAQKTADNGQTVIALIDGTHATV
                     KKLYR"
     gene            complement(750..1388)
                     /locus_tag="VGD38_04740"
     CDS             complement(750..1388)
                     /locus_tag="VGD38_04740"
                     /inference="COORDINATES: protein motif:HMM:TIGR03914.1"
                     /note="This protein belongs to the uracil DNA glycosylase
                     superfamily, members of which act in excision repair of
                     DNA. However, it belongs more specifically to UdgX branch,
                     whose founding member was found to bind uracil in DNA
                     (where it does not belong), without cleaving it, appears
                     to promote DNA repair by a pathway involving RecA, rather
                     than base excision; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UdgX family uracil-DNA binding protein"
                     /protein_id="HEY0727355.1"
                     /translation="MATRKASDSAANDLIPPRPTLTSLKAAAAGCKACDLWEKGTQTV
                     FGEGGRRARVMFVGEQPGNEEDLTGKPFVGPAGRLFDSALGEAGVERKQTYVTNVVKH
                     FKWEPRGKRRIHKKPNSAQIAACRPWLEAELAVVKPDVIVALGATAARSLLGPQFRVT
                     KQRGEFLESTLAPYVMATVHPSSILRAPDDETRQLEYRRFVDDLKKLARVIK"
BASE COUNT          322 a          428 c          444 g          379 t
ORIGIN      
        1 acgatataac ttcttcacgg tcgcatgagt cccgtcaatc agtgcgatca ccgtctgacc
       61 gttatcggcc gtcttctgtg ccgtgacgat aatgatgtct ccatcctgaa tgttgtcttc
      121 aatcatcgag tcgccacgca cgcgcagcgc aaagttgcgc ccgcggccct ggaggtcgcg
      181 aggcaccgcg atcgtgtcgt agttgagaat cgcttcaatc ggctgaccgg cggcgaccgt
      241 cccgagcaaa gggatctcac cccgatcgtc gtcgtccggc ggcggttgtt tgacgatctg
      301 gattccacgg ctgatattcg gcgtcttctt aatcaatccc tcacgttcaa gggctgttat
      361 aatcccgtga acacttgcag atgaactaat ctgaaaatgt ctgccgatct ccgcgatcgt
      421 tggcggttca tcatttgatt cgatgtaacg cttgataaat tcataaactc tgcgttgttt
      481 tgcagttatt ggcattgccc agccctcact ttattttcgt ttcgtttcgc cctgccgacc
      541 gaaaatagat tttcattgac agccgaaaat cacccgaata ttctcgaaca aatgcgagcg
      601 gacgtcaaga gatttctttc gcaccgcggc tttagcccgg tgatcttgtt gcgccgcctc
      661 acgtcattcg ggatcagtcg gacagttccg gatggtggcc actggagaac cactcaccgg
      721 gctaaaccca cggtgtgaaa agggaaggct tacttgatta cgcgagctag ttttttgagg
      781 tcgtcgacga aacgtcgata ttcgagctgc cgggtttcat cgtccggcgc gcgaagaata
      841 gaggagggat gaacggtagc catcacgtaa ggggcgaggg tggattcgag aaattcgccg
      901 cgttgtttgg tgacgcgaaa ctgtgggccg agcagcgacc gggccgcagt cgcaccgagc
      961 gccacgatca cgtcaggttt gacaaccgcg agctcggctt cgagccaggg gcggcaggca
     1021 gcgatttggg cggagttggg tttcttgtga atgcggcgtt tgccgcgcgg ttcccatttg
     1081 aagtgtttga caacattggt gacgtaagtt tgtttgcgtt cgacgcctgc ttcccccagc
     1141 gcgctatcaa acaagcggcc ggccggaccg acaaaaggtt ttccggtgag gtcttcttcg
     1201 ttgccgggtt gttcgccgac aaacattacg cgagcgcggc ggcccccttc accaaaaacg
     1261 gtttgcgttc ctttctccca gagatcgcaa gccttgcaac cggcggcggc agcttttagc
     1321 gaagtgagtg tcggccgcgg aggaatcaga tcgtttgccg cgctatcgga cgctttgcgt
     1381 gtggccatac gttacatata accatgagaa gtgcattatc aaaagctgag atcgaagcga
     1441 acattgccag ccgttttggc gatgctttcc ggctccacga gaaggccgcg ccggaaactc
     1501 tctccaccgg tattgcggaa gtcgatgcct taacaggcgg cattccccgc ggcgccctca
     1561 cggaaatttt tgg
//
LOCUS       DASWTX010000310         1879 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_90325, whole genome shotgun sequence.
ACCESSION   DASWTX010000310 DASWTX010000000
VERSION     DASWTX010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1879)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1879)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1879
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90325"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..381
                     /locus_tag="VGD38_04745"
     CDS             <1..381
                     /locus_tag="VGD38_04745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727356.1"
                     /translation="LFFEKVEKNASGLAMLSEVFGNVAETMGVKIEGAEVLFTIRIGS
                     QEETHSLRRIDGLPFRIEIKNMDYNANAIYSDMPDYYKYFASPSGNQFELKPIVEDAS
                     VESINQQEFCHPIVVDNPGSIDEL"
     gene            378..1628
                     /locus_tag="VGD38_04750"
     CDS             378..1628
                     /locus_tag="VGD38_04750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727357.1"
                     /translation="MRKQMGLLILEKHLIWSGPNAEGGISFYYYYDAITWVVGVLVLA
                     GVAWFLVTRYLRALALRRRPRRVNHNLLKRVVKIKSELSRRFLPLGVSNNIHAVGIGM
                     LAGAAEQYCIQVFVNDAAQELWAGSGATPLPGNYRGVPLVLIEMPAAGFLSAAGLPIR
                     DRQEVIVGGISGANSNLTGQSGTIGYFCTRKSRFSRLKETHLLSNSHVFADLQKATVD
                     EGDLIMQPSPGEPGNNRPIGTLVNFSALKFEGDVHEPNHVDAAIAKLWSTQQHKPLLP
                     FIGAVKGYVNKEDMRVGEAARKFGRTTGYTEGRIFSIYLDIWIRYDRTRQSAFFENQL
                     LVEPAPAFQKFVAKGDSGSLLVDENQHAIGLIFGGMSEAPETTHPLPKSGAATINKPQ
                     RIEGYGVANPITDVMERLKIELIV"
     gene            1651..1812
                     /locus_tag="VGD38_04755"
     CDS             1651..1812
                     /locus_tag="VGD38_04755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727358.1"
                     /translation="MYLAGVEGVLRTWQSIKTAKPKAKFALMDELLEKQKAGTLAEQV
                     QTNMKGCKN"
BASE COUNT          458 a          493 c          540 g          388 t
ORIGIN      
        1 ctgtttttcg agaaagtaga aaagaacgcg agcggcttag caatgctaag cgaggttttc
       61 ggcaatgtcg cagagacgat gggcgtcaag atcgaaggcg cggaagtcct gtttaccatc
      121 cgcattggca gccaagaaga aacgcactcg ctgcggcgca tcgatggtct tccgttcaga
      181 atcgagatca agaacatgga ctacaacgcc aacgccatct acagcgacat gccggactat
      241 tacaaatact tcgccagtcc ttccggcaat caattcgagt tgaaacccat cgtcgaagac
      301 gcgagtgtcg aatcgatcaa tcagcaggaa ttctgtcacc cgatcgtcgt cgataatccg
      361 ggatcgatcg acgagctgtg agaaaacaga tgggcctact cattcttgaa aagcatttga
      421 tctggtccgg cccgaacgct gaaggcggca tcagctttta ttactactac gacgcaatca
      481 cgtgggtcgt gggcgtgctg gtgctggccg gcgtggcgtg gtttctcgtg acgagatacc
      541 tgcgcgcgct cgctttgaga cgtcgcccgc gacgcgttaa ccacaacctg ctcaaacgcg
      601 tggtcaagat caagagtgag ttgagccggc gatttctgcc gctgggtgtc tcgaacaaca
      661 tccatgccgt cggtatcgga atgctcgccg gcgcggctga gcagtattgc atccaggttt
      721 ttgttaatga tgccgcgcag gagttgtggg caggatcggg cgcgacgccg ttgcccggca
      781 actatcgcgg tgttccgctg gtcttgatcg agatgcctgc ggccggtttt ctatcggccg
      841 ctggtctacc tatccgcgac cgccaggagg taatcgttgg aggcatcagc ggcgcgaaca
      901 gcaatctgac cgggcagagt gggaccatcg gttatttctg cacgcgtaag agtagattct
      961 cgcgtttgaa agagactcac ctgctcagca atagtcatgt gtttgccgat ttgcaaaagg
     1021 cgactgtaga tgaaggcgac ttgatcatgc agccgagtcc gggcgaaccg ggaaacaatc
     1081 ggcccatcgg gacgctggtt aacttctctg cgctgaagtt cgaaggcgac gtgcacgagc
     1141 cgaaccacgt agatgcggcg atcgcaaaac tatggtccac gcagcagcac aaaccgttgc
     1201 ttccgttcat cggcgcagtg aagggctacg tcaacaagga agacatgaga gtcggagaag
     1261 ctgcgcgcaa gttcggccga accaccggct acacagaggg gcgcatcttc tcgatctatc
     1321 tcgacatttg gattcgttac gaccgcacac ggcagtcagc gtttttcgag aatcagttgc
     1381 tcgtcgagcc ggctccggcg ttccagaagt ttgttgccaa aggagacagt ggctctctgc
     1441 tggttgatga aaaccaacat gctattggtc taatcttcgg cggtatgtca gaggcgccag
     1501 aaacaaccca cccgctacca aagagcggcg cagccacaat caacaaacca cagcgaatcg
     1561 agggttacgg cgtagccaac ccgatcaccg acgtcatgga acggctcaag attgaattaa
     1621 tcgtttgagc cggcccagga tgatgcggcg gtgtacctcg cgggcgtcga aggtgtgctg
     1681 cgcacgtggc aatccatcaa gacagcgaaa ccgaaagcaa agttcgcgct gatggatgag
     1741 ttattggaaa agcaaaaagc cggcacgtta gcggagcagg ttcaaaccaa catgaagggg
     1801 tgcaagaatt aaagctactg gctcccactc gcgagtgact gcaaccgctc ctctatattt
     1861 ggaatagatc gaatctgaa
//
LOCUS       DASWTX010000311        10332 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_373537, whole genome shotgun sequence.
ACCESSION   DASWTX010000311 DASWTX010000000
VERSION     DASWTX010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10332
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373537"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(315..824)
                     /locus_tag="VGD38_04760"
     CDS             complement(315..824)
                     /locus_tag="VGD38_04760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727359.1"
                     /translation="MALVGLTSLAGYSSAAPMQDRVNANWKGTESFSLTNAGPNVARC
                     GAFPENIELSFSGSGIDTEGGVFDVVASACTNTTTNLIFDLKATDTYVQSGDQVFIEA
                     DSFVQIINPANCVASNSHAVMGRVAGGTGSKAGATGHARFHFANNLTPCPGPNAPAHV
                     WFEGVFQRP"
     gene            complement(897..1451)
                     /locus_tag="VGD38_04765"
     CDS             complement(897..1451)
                     /locus_tag="VGD38_04765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727360.1"
                     /translation="MRITKLTLALLTLAGLAFLASYFGGPTSRAAAPDNRVNAHWKGA
                     SQLVPVAVGPNVARCGAFPENIEIQFSGSGIDTGGGIFTSAASTCTNTTTGLIFDLKS
                     TDTYVNGDAVLIETDPFTPVLDPATCVSTNTQAVKFSVAGGTGAYAGATGHGRFHLAS
                     NEPTCNGIAAPARVSFEGVLQLAQ"
     gene            1563..1997
                     /locus_tag="VGD38_04770"
     CDS             1563..1997
                     /locus_tag="VGD38_04770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727361.1"
                     /translation="MNSVSTTNLLQTISQAANDDDQFARLRNLVFDYFADEETYLFES
                     ESVRDVFGVLLPYLHFEEAFGDEQRAERMKRLEKALRAELTPEMAVLGLEYERIAELD
                     RKKQSGVISDFTFQQQLRKISASKINWAKVLALYASHADLAS"
     gene            complement(1994..2968)
                     /locus_tag="VGD38_04775"
     CDS             complement(1994..2968)
                     /locus_tag="VGD38_04775"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HEY0727362.1"
                     /translation="MPQNPKPGVIGLSLSRDGKTLLVAGADGIIRVWDLASGEVKRTL
                     TGHTNSIYKAQVSPNEKLIASSSRDSTARIWDFATGRELLKLTGFRCAVKSVAFSPNG
                     KMVGVVGNDGMLKLWDVKTGRELKTLVHSDSPDVDTSVYSVIFSRDGKKIYAGNGDGT
                     ISEWDARTGEESDVWKAHNDNVMELVFSADYRLLASSGNNEGNAKLWDVATKRELRTF
                     AEQKTDGLLENSHVVAISPNQKMIAASVAGIDEKRRQYAFVRTYVWDVETGEKLFTLE
                     GHKFDVGGLVFTHDNRYLLTGSADRTIKIYDLQTGKETRTLTQPAANN"
     gene            3227..3706
                     /locus_tag="VGD38_04780"
     CDS             3227..3706
                     /locus_tag="VGD38_04780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727363.1"
                     /translation="MCVSAKVVLLLVLFVSSSVTVAQQQPSWKPTDLILHNCEMNIHL
                     LDTAHHLAGDDTVIVAVARLGTGERNSELNRRRLHNVKAYLTSFGWKRPRETVVTAEG
                     ERVDGYGRIEIYVRGGHWATLAVRRNGDLIVGLCEPDYMRGREENRTFYPFRDRKKR"
     gene            3713..4276
                     /locus_tag="VGD38_04785"
     CDS             3713..4276
                     /locus_tag="VGD38_04785"
                     /inference="COORDINATES: protein motif:HMM:TIGR02999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0727364.1"
                     /translation="MNSDDSSVVTGLLVKWSDGDESALEQLIPFVERELKQIAHAHMR
                     RENRNHTLQTTALVNEAYLKLIDQRSPWQNRAHFFAIASRIMRRVLLDYARSQNRAKR
                     GGEMIFVPVTEVDAESYDRAAELIDLDEALERLAEFDPEKARIVEMRFFGGLTIEEIA
                     EVLKISPVTVSRHWSVSKAWLQREMQG"
     gene            4547..6070
                     /locus_tag="VGD38_04790"
     CDS             4547..6070
                     /locus_tag="VGD38_04790"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY0727365.1"
                     /translation="MRDQLLIDQDVGNYTLKRIIGRGGMGDVYLGRDKRLGRHVALKV
                     LPSSLSANAELSLRFHEEARAASSIAHANVAHIYELGNTDEREYIAMEFIDGITLRER
                     LKRGPVELAEAVEIGEQVGRGIAAAHAAGVLHRDIKPENIMLGADGFVKVLDFGLAKP
                     NRKARLGNYEENLISGLTSPGVIMGTAAYMSPEQFCGDETDARTDIWSLAVTLYELIS
                     GRQPFYGNTYFQLKTAVLHEEPLPLRIPHASDSAKTLVADILTKALQKNKDARYATIN
                     EFVDELKRVRLILNRDYRAMGSWMDHTTAAPFYPATSAFQHTAQVPQTATGTYAPKKE
                     RFLRFSIFVLMSLGFFGVLLAVQELTRLVYHWTGMEFGTFQILSRAIHATANLFGGFV
                     AGGLATLVRTRRPIRYPFVVAALVVAYAFYLSTFSWIPELDVFALYSLPYFAAAVAGA
                     SLAFRPWSLVSRYARRKSLNGDPLGARGEEFLFGIDRDDVRAEGADAPVWTKGDLRH"
     gene            complement(6059..7510)
                     /locus_tag="VGD38_04795"
                     /pseudo
     CDS             complement(6059..7510)
                     /locus_tag="VGD38_04795"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
     gene            complement(7517..8071)
                     /locus_tag="VGD38_04800"
     CDS             complement(7517..8071)
                     /locus_tag="VGD38_04800"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEY0727366.1"
                     /translation="MKFSLVLLLMFVSASVALAQDEKSPAEKYFSDVELINQDGEKVR
                     FYSDVLKNKVVVINTFFTTCKSICPPMNRNFEKIQEALGDRLGKSVFLVSISVDPETD
                     TPTRLKEYGRQFHARPGWMFLTGKKENVDWALYKLGQYVEAKDNHTSIFIIGNEPKGL
                     WKKAFGLAKADELIRIVEDVINDR"
     gene            complement(8068..8694)
                     /locus_tag="VGD38_04805"
     CDS             complement(8068..8694)
                     /locus_tag="VGD38_04805"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEY0727367.1"
                     /translation="MNTRTLKFFCIALLVLASSNGVAQSCHTPAAQAKKPETKMVIPD
                     VPVLDQDGNKLHFYTDLIKGKTVAINFIFTNCTTICPPLAATFARLQKEMGDKIGNDV
                     HLISISVDPVTDTPERLKAWGAKFKAGPGWTFVTGEKQEMDKLLNALGAAVSRREDHT
                     PATIIGNDAKGVWTRTYGLAKISQIMGVIQNVREGKVDDASTSEETKR"
     gene            complement(8715..>10332)
                     /locus_tag="VGD38_04810"
     CDS             complement(8715..>10332)
                     /locus_tag="VGD38_04810"
                     /inference="COORDINATES: protein motif:HMM:NF044870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome D1 domain-containing protein"
                     /protein_id="HEY0727368.1"
                     /translation="SEKATEPAQCREKIRSYLTGSLRTRPDVDLNSYYVLALNKSPDI
                     SVIDPLLGFGGSKLFTLVMLKSPGEDWLLTRDGDKLFVTLPLIDQVAVIDTRNWKVTD
                     YIDTGSKPTRITVQPDQQYAWSAHDGKEGGVTVLDPVNLKVVAKIQTGAGQHDIALSN
                     DNQFAFVSNREGGTVSVIDIRKLEKLTDVNVGPGPVSMALSDLSKALYVASEIDGTVT
                     VIEQQSQQVLARMKTKPGARSIRFAPGGRYGFVVNTKQSLINIFDAASNRMLHEVNVG
                     KSPDQIMFSETIAFVRSLETENVEMLRLGTIGKEVDITEFPGGQAAPGQGSTPIRADS
                     IVLAPEGNSVIVANPVDKVLYYYSEGMAAPMGNFQNYRREPLAVMVVDRSLREIKPGV
                     YSTTIKLPSSGRYDVAFLNDSPRVSHCFELSAETNPGLKEKPLVALRIEHQLKERKLA
                     VGQEFTFRFKLIDTATGDPKADLKDVRVLTFLSPGTWQRRDIAKPIGDGVYELKINVP
                     QTGVYMLFVESTSMGVRYVDLPYLMLQATE"
BASE COUNT         2157 a         2930 c         2892 g         2353 t
ORIGIN      
        1 aatcgccgag atcttatcta gctccgctca aattcaatgt tgaattccgc aaattcaata
       61 ttgaatttcg cgaatacaag gctgtaccgg ccgagttcaa gatagttccg gcgcgattca
      121 atgtgcattt tccgaaagtg caaacaagat ctcgcggatc ttaaatgcta tttgccgagt
      181 tcaagatagt tctgaccgaa ttcaagatag ttcccgccga attcaagata gtccaagcga
      241 aattcaagaa gtaaaaaagc ctgaaactct cgttccaggc cttttcttaa aacggcttgc
      301 ttgttcaccc taacttatgg acgctggaac actccttcaa accacacatg cgccggcgcg
      361 ttcggcccgg gacacggcgt gaggttgttg gcgaagtgaa agcgcgcgtg gcccgtggcg
      421 ccggcttttg aaccagtgcc gcccgcgaca cggcccatca ccgcgtgcga gttgctcgcg
      481 acgcagttcg ccgggttgat tatctgaacg aaagagtccg cttcgatgaa cacctgatcg
      541 ccactttgca cgtacgtgtc agtcgctttc aaatcgaaga tgagattcgt cgtcgtattc
      601 gtgcacgccg acgcaacgac gtcaaacacg ccgccctcgg tatcgatgcc cgaacccgag
      661 aatgagagtt cgatgttttc cggaaacgcg ccgcaacgcg ccacgttcgg tccggcgttt
      721 gtcagactga aactctcggt gcctttccaa tttgcgttaa cgcgatcctg catcggggcg
      781 gcgctggaat aaccggcaag tgaggtcagt cctacgagtg ccatcagcat aaaagtgagt
      841 ttggtaattc gcattagttc tttgctcctt caagtatgag tggttgatgc gtgtgctcac
      901 tgggccaact ggagcacgcc ttcaaacgaa acacgcgcgg gtgcggcgat gccgttgcac
      961 gtcggttcgt tcgaggccag atgaaaacgt ccgtgaccgg tggcgccggc gtacgcaccc
     1021 gtgccgcctg cgacgctgaa cttcacagcc tgcgtgttgg tcgaaacgca agtcgcgggg
     1081 tcgagcaccg gtgtgaacgg atctgtttcg atgagaacgg cgtcaccatt aacgtaagtg
     1141 tcagtcgact tcagatcgaa gatgagaccc gttgtcgtat tggtgcacgt cgaagcagcg
     1201 ctggtaaaaa tcccgccgcc ggtatcaatg ccggaaccac tgaattgaat ttcgatgttt
     1261 tcgggaaacg cgccgcagcg cgcgacgttt ggaccaacag caacaggcac caactgcgat
     1321 gcgcctttcc aatgggcatt gacgcgatta tctggcgcgg cggcgcggga agttggtccg
     1381 ccgaaataac tggccaggaa tgcgaggccg gccagggtta gtaacgcaag tgtgagtttc
     1441 gtaattctca tgttttctcc ttagagggtc gatatctttc ggtcaacgac taaggcggag
     1501 aagcggcggg aaaactatca ggtgcaagaa acttttttct gataaaaaga gatggttctg
     1561 ttatgaactc agtttcaacc accaatctgc tgcaaacgat ttcgcaggcc gcgaatgatg
     1621 acgatcagtt tgcgcgcctg cggaatctgg tattcgacta ctttgctgat gaagagactt
     1681 atctcttcga gtcggagtcg gtacgagacg tgtttggcgt gctgctgccg tacctgcatt
     1741 ttgaagaagc tttcggcgac gaacagcgcg cggagagaat gaagcgtttg gagaaagctt
     1801 tacgcgcgga gctcactccc gaaatggcgg tgctggggtt ggagtacgag cgaatcgccg
     1861 agttggaccg gaagaagcaa tccggggtga tttcggattt tacttttcag caacagctac
     1921 gaaagatctc ggcgtcgaaa ataaactggg ccaaagtgtt ggcgctgtat gcgtcgcacg
     1981 ctgatcttgc gtcttagttg ttcgctgccg gttgcgtaag tgtgcgcgtt tcttttccgg
     2041 tttggagatc gtagatcttg atggtccggt cggcgctgcc ggtgagcagg taacgattgt
     2101 cgtgtgtaaa gaccagtccg ccgacgtcga acttgtgtcc ttcaagtgtg aacagctttt
     2161 ctccggtctc gacgtcccaa acgtatgttc tgacgaaggc atactgccgg cgcttttcat
     2221 caattccagc cacactcgcc gcaatcatct tttgattcgg actaatcgcg accacgtgcg
     2281 agttctcgag taaaccgtct gtcttctgtt ctgcaaacgt gcgcagctcg cgcttagtcg
     2341 ccacgtccca caacttcgca ttcccttcat tgttgccgga cgaagccagc aggcgatagt
     2401 cagcactgaa gaccagctcc atcacgttat cgttgtgcgc tttccagacg tcggattctt
     2461 cacccgtgcg tgcgtcccat tcgctaatgg ttccgtcgcc gttgcccgcg tagatctttt
     2521 ttccgtcgcg gctaaagatg accgagtaga ccgaggtgtc cacgtcggga gaatcagaat
     2581 ggaccagcgt cttcaattcc cttcccgttt tcacgtccca caacttcagc atcccatcat
     2641 tgccgaccac gccgaccatc tttccgttgg gactgaacgc gaccgactta acggcgcaac
     2701 ggaatccggt caacttaaga agctcgcgtc cggtggcgaa atcccaaatt cttgccgtcg
     2761 aatcccggct cgaagacgcg atcagctttt cattcggact gacttgggct ttgtagatcg
     2821 aattagtgtg accggtcagc gttcgtttca cttctcctga cgcgagatcc caaacgcgga
     2881 tgatgccatc cgcgcccgca accaggagcg tcttgccgtc gcggctgaga ctcagaccaa
     2941 taacccccgg cttcgggttc tgcggcaacg gcggagaagg ctcgcaacgc gaaaccgttt
     3001 gcgccaagga agatgttaca aagacgaacg tgagacagat tgagagaaga gcagttcgga
     3061 tcatggaccg aatcttaagc gcgagccggt tcgatctcaa agcctcgcgg cttacgagag
     3121 tggtgagcgc gccgcgctgt gcccgcttga taaacttacc cgctttgctg cgtgagctag
     3181 tatctttgtg aggagtttgg attctacgca ggagacacag gcgcagatgt gcgtatcagc
     3241 gaaggtggtg ctgttgttag ttctctttgt ctccagttcg gtgacggtag cgcagcagca
     3301 gccgagttgg aaaccgaccg atttaatact gcataactgc gagatgaaca ttcaccttct
     3361 cgacaccgct catcatctcg ccggcgacga caccgtcatc gtcgccgttg cgcgcctcgg
     3421 cactggtgaa cgaaactcgg agctcaatcg cagacggctt cacaacgtca aagcttacct
     3481 gacgagtttc gggtggaaac gcccgcgtga gactgtggtc acggccgaag gtgaaagagt
     3541 agacggctat ggccgcattg aaatctacgt gcgaggcggt cattgggcca ccctggccgt
     3601 ccggcgcaat ggagacttga ttgtgggact ttgcgaaccg gattatatgc gcgggcgcga
     3661 ggagaaccga accttctacc cttttcgcga tcgaaagaag cgttgagatg ccatgaactc
     3721 cgacgactcc tcagttgtaa ccggtctgct tgtgaagtgg agtgatggtg atgagtctgc
     3781 actcgaacaa ctcatccctt tcgtcgagcg cgagctcaaa cagatcgcgc atgcgcacat
     3841 gcggcgcgaa aacaggaacc acacgctaca aacaacggcc ctcgtaaatg aagcctacct
     3901 caagctcatc gatcagcggt cgccgtggca gaaccgcgcg cacttctttg ccatcgcctc
     3961 gcgcatcatg cgccgcgtgt tgctggacta cgcgcgatct cagaaccgag ctaaacgagg
     4021 cggagagatg atttttgtgc cggttacgga agtcgatgcc gaaagttacg accgcgccgc
     4081 cgagctcatc gatctcgacg aagcgctcga acgcctcgcc gagtttgatc ccgaaaaggc
     4141 ccgcatcgtc gagatgcgtt ttttcggcgg tctgactatc gaagagatcg cagaagtgct
     4201 gaagatttca cccgtaactg tcagccgtca ctggagcgtt tcgaaagcat ggctgcaacg
     4261 cgagatgcag ggctgatcgc cggaatgaca agttccgccg atcgatgtcg cgtattagat
     4321 gaagagggaa gatctagacg tgaaatcaca acgttgggaa ctcatccagg acctgtttca
     4381 tcaggcactc gcgcaggatg aagccgtgcg tgccgagttc ctgctgcaac gttgtcagga
     4441 agacgtcacg ctgctcgaag agatacagac actgctctcc tgtcacgacg cgccgaatca
     4501 actctggaac caggaaaaac tgacgctcgg gctgaagttg ctcgcgatgc gcgaccaact
     4561 actgatcgac caggacgtcg gcaactacac tctaaaacgc atcatcggcc gcggcggaat
     4621 gggtgacgtc tatctcggcc gcgacaaacg gctcggcaga cacgtcgcac tgaaggtcct
     4681 gccatcgagt ctgagcgcaa acgctgaact gagcctgcgc tttcacgaag aagcccgcgc
     4741 cgcatcctcg attgcgcatg cgaacgtcgc tcacatttac gaactcggga acactgatga
     4801 acgcgaatac atcgcgatgg agtttattga tggtatcact ctgcgcgagc gacttaagcg
     4861 aggcccggtt gaattggcgg aagcagtgga gatcggcgag caggtcgggc gcggtatcgc
     4921 cgcggcccac gctgccggag tgctgcatcg cgacatcaag ccggaaaaca tcatgctcgg
     4981 cgctgatggt tttgtgaaag tgctggactt cggtttggcc aagccaaaca gaaaagccag
     5041 gctgggtaat tacgaagaaa acctgatctc cggtctcacc tcacctggcg tgatcatggg
     5101 cacggcggct tacatgtcgc cggagcagtt ttgcggagat gaaactgatg ctcgcaccga
     5161 tatctggagt ctcgcagtta cgctgtacga actgatctcg ggccgccagc ccttttatgg
     5221 gaatacgtat tttcaactga aaacagcggt gctgcacgag gagcccttac cgttaagaat
     5281 cccgcacgcg agtgactcag ctaaaacctt agtcgccgac atcctgacga aagccctgca
     5341 aaagaacaaa gacgctcgct atgcgacgat caacgagttc gttgatgagt tgaaacgagt
     5401 gaggctgata ctgaatcgcg actatcgcgc gatgggatca tggatggacc acacgaccgc
     5461 cgcgcctttc taccctgcga cttccgcctt tcagcatacg gcgcaagttc cacaaactgc
     5521 gacgggtacg tacgcgccca agaaagagcg cttcctgaga ttctcgatct tcgtgctgat
     5581 gtcgcttggc ttcttcggcg tactgcttgc ggtacaggag ctgacgcgcc ttgtctacca
     5641 ctggaccggg atggagtttg gcacttttca aattcttagc cgggccattc acgcaacggc
     5701 taatttgttt ggtggatttg tcgcgggagg actcgcaact ctggtcagaa cacgacggcc
     5761 aatacgttat ccgtttgtag ttgcggctct cgtggttgct tacgccttct acctttcaac
     5821 ctttagctgg atacccgaac tggacgtctt cgcgctttac agtcttccct acttcgcagc
     5881 cgccgtcgcc ggtgcgtcgc tcgcgtttcg tccgtggtcg ctggtgtcgc gttacgcccg
     5941 tcgcaaatca ctcaacggcg atccactcgg cgctcgcggg gaagagtttc ttttcgggat
     6001 cgatcgtgac gacgtacgcg ccgagggcgc cgacgcgccg gtttggacca aaggtgatct
     6061 tcggcattag acccgtgtcg tattcgtaaa gaccttcaag cgtcgtgatg agccgttcgc
     6121 ggctgaggtc tttgccgcag agctcgagcg catggaccag gatccgcgcg gccgcgatcg
     6181 ctgaggcttg cgcggctgcg tgctgggagt tgagcttgtt tctttgcagc agcccgctgt
     6241 attcagccgc gcccgcggcg gtgacgtctc cgggaacagt cgggaaggca aagaagacct
     6301 tgtctttcat cttcaccgag acagtgtcgg cgacgttctt tccgaccagc gagcccaaca
     6361 ggtagaacgt tggcgtccaa ccaacagctt cagcctctcg caacacagcg tttgcttcgg
     6421 gacccgaacc gagaaagaaa tcattgtcga tgcccttccg gttagcctca ctcacaaacg
     6481 ccgccgcgct gaattgctct cgcgtgtaat agatcggcgc gatcgaactc caccgaggct
     6541 tcgccttctc ttccagcgca gcagcaatac tccggttgaa ctccagatcc ggtgaaacga
     6601 tcgccgcgcg cgactttgcc ggatcagttt tcttcgccgc aaatgtaacg agggcgcgtc
     6661 cctgctcttt caaaccggga agtagctaaa agatgtaacg attgagcggc agtccacgct
     6721 gcggcatcaa cgtcgagggc ccgatgaacg gaacctcttt ctccttcgtc aacaaagcaa
     6781 cgtcgtcttc ggcgcctgcc gtaagaccac tcacgatcgc aaacacctga tcgttttcga
     6841 tcagttgttt gacgtttgcc gctgtcgttt tcgcatcgcc gtacatcacg cgcagctcga
     6901 tcttgcggtt gtagatgccg ccgtggttat tgatctccgc aaagtacgcc tgcaatacat
     6961 cgcccatcga ctgggccaac ccgctgagtg cggccttgtc tggcagcacc gtcccgagca
     7021 cgatggtcgt gtcggttagt ccggggtccg tgtctgtctc gatgcgtttg agatacgcga
     7081 tcaggttcgc catgtcttcc tgtggcatgc gataggtcgg catcgcaacc gccaacttgt
     7141 tacccgccgg atccaaaccc gccgtcatcg tgcgaataaa agaagactct gtatacgccc
     7201 catgcttgcg cccgccgtcg tctgtgtgtc cgtaaggttt cgtcaggtgc gaccagctca
     7261 tgttgcccgc agtgacaccg ccttcggtga ttccctcacc tctgttgccg tgacaaccag
     7321 cgcacgtgag tgtcgttgcg ggcacgtcga cctcgcccat catggccgtg atctcctggc
     7381 ccgacgcgct ctcacctctg agatagaaag ccttgccacg tttctcctga agcgtgagct
     7441 cgcggcgttg ctgcggcgga gcgggaagcg tgatggttat tagtgcgacg agtaagagcc
     7501 ggataatcat ggttgctcac cgatcgttga ttacgtcttc aacaattcga atcaattcgt
     7561 ctgccttggc cagcccgaac gctttcttcc aaagcccctt cggctcgttg ccaatgatga
     7621 aaatgctcgt gtggttgtct ttggcttcga cgtattggcc caacttgtaa agcgcccaat
     7681 cgacgttctc tttctttccg gtcagaaaca tccaacccgg ccgcgcgtga aactgccggc
     7741 cgtactcctt gagccgcgtc ggcgtgtccg tttccggatc gacagagatc gagacgagaa
     7801 acacgctctt accgagccga tcgccgagcg cttcctgtat cttttcgaag tttcgattca
     7861 tcggcgggca gatgctcttg caagtcgtga agaacgtgtt gataaccacg accttgtttt
     7921 tgagcacgtc gctgtagaag cgcactttct cgccgtcctg gttgatcagc tccacgtcgg
     7981 aaaagtattt ctcggcgggt gacttctcat cctgcgcgag agccaccgac gccgacacaa
     8041 acatgagtag cagaacgaga ctgaacttca tcgcttggtc tcctcactgg tggaagcgtc
     8101 gtcgactttg ccttcgcgca cgttctgaat cacgcccatg atctggctga tctttgcgag
     8161 tccgtaagtg cgcgtccaaa cacctttggc gtcgttgccg atgatggtcg cgggtgtgtg
     8221 atcttctcgc cgcgaaacag ccgcgccgag cgcattcaac agcttgtcca tctcctgctt
     8281 ttccccggta acaaacgtcc agccgggacc ggccttgaac ttggcgcccc acgctttcaa
     8341 ccgttccggt gtgtctgtga cgggatcgac gctgatcgaa atcaggtgaa cgtcattacc
     8401 gatcttgtcg cccatctcct tttgcagccg tgcaaaagtc gcggccagcg gcgggcagat
     8461 ggtggtgcag ttcgtgaaga tgaagttgat cgcgacggtc ttgcctttga tcaggtcggt
     8521 gtagaaatga agcttgttgc cgtcctggtc caacaccggc acgtcgggaa tgaccatttt
     8581 ggtctccggc ttcttggctt gcgcagccgg agtgtggcat gactgggcca cgccgttgct
     8641 gctggcgagc acgagtaacg cgatacagaa gaatttgagt gttcgtgtgt tcatttcatt
     8701 agcctctcaa ctgcttactc ggttgcctgc agcatcaagt aaggaaggtc tacgtaacgc
     8761 acgcccatcg acgtcgattc gacgaacagc atgtagacgc cggtttgcgg cacgttgatc
     8821 ttgagctcgt agactccgtc gccgatcggt ttcgcgatgt ctcgacgctg ccaggtgccg
     8881 gggctcagga acgtcaacac acgcacatct ttcaggtccg ctttcggatc ccccgtggcc
     8941 gtgtcgatca gcttgaagcg gaaagtaaac tcctggccca ccgctaactt gcgctccttg
     9001 agctggtgct cgatgcgcag cgccaccaac ggcttctctt tcaatcccgg gttggtttcc
     9061 gcactcagct cgaagcaatg agacacgcgc ggagagtcgt tcagaaaagc gacgtcgtaa
     9121 cggccgctcg aaggcagctt gatcgtcgtc gaataaacac cgggtttgat ctcgcgcaag
     9181 ctgcgatcga caaccatcac cgcgagcggc tcgcgccggt agttctggaa gttgcccatc
     9241 ggcgccgcca ttccctcgct gtagtaataa aggaccttgt cgacgggatt cgcgacgatg
     9301 acggagtttc cttccggagc aaggacgatc gaatcggcgc ggatgggagt cgaaccctga
     9361 ccgggagcgg cctgcccgcc gggaaactca gtgatgtcga cctctttgcc aatcgttccg
     9421 agccggagca tctcaacgtt ctcggtctcg agcgatctga cgaaggcaat cgtctcgctg
     9481 aacatgatct gatccggcga cttgccgacg ttcacttcgt gcagcatgcg attcgacgcg
     9541 gcgtcgaaga tgttgatgag actctgcttg gtgttgacca cgaatccgta ccggccgccc
     9601 ggcgcgaaac ggatcgaacg cgcgcccggt ttggttttca tgcgcgccag gacctgttgg
     9661 ctctgctgct cgatcaccgt caccgtgccg tcgatttcac tcgcgacgta gagcgctttg
     9721 ctcaggtctg acagcgccat cgagaccgga cctggtccaa cgttcacgtc ggtgagtttt
     9781 tccagcttgc gaatgtcgat gaccgaaacc gttccgcctt cacggttgga tacaaaggca
     9841 aactggttat cgttgctgag cgcgatgtcg tgctggcccg cgccagtctg aatcttcgcc
     9901 acgaccttca ggttcaccgg atcgaggacc gtcacaccgc cttccttacc gtcgtgtgcg
     9961 ctccaggcgt attgctggtc cggctgcacg gtgattcgcg tgggtttgct tccggtgtcg
    10021 atgtagtcgg ttactttcca attgcgcgta tcgatcacgg caacctgatc gatcagcggc
    10081 agcgtgacga aaagcttgtc gccgtcgcgc gtcaggagcc agtcttcacc cggactcttg
    10141 agcatcacga gcgtgaacag tttgctgccg ccgaatccca gcaagggatc gataaccgag
    10201 atgtcggggc tcttgttcag ggcgagcacg taataagaat tcagatcgac gtccgggcgc
    10261 gtgcggagac tgcctgtcag atacgaccgg atcttctcgc ggcattgcgc gggctcagtc
    10321 gctttctcgc tg
//
LOCUS       DASWTX010000312         2115 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_26741, whole genome shotgun sequence.
ACCESSION   DASWTX010000312 DASWTX010000000
VERSION     DASWTX010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2115
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26741"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..573)
                     /locus_tag="VGD38_04815"
     CDS             complement(<1..573)
                     /locus_tag="VGD38_04815"
                     /inference="COORDINATES: protein motif:HMM:NF016424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HEY0727369.1"
                     /translation="MRNYYSFRIGFGLLALVFSLFVTQVSAQPTPPSPVPLPTPFTPI
                     VDTANVIDAETRSRLESIYNNLKERGKIEFAVLTVPTTGNRDIFDFSIAVARGWGIGP
                     RDGDRAGFRLVVALQDRKYFTQVSRHLEGDLTDGVVGQIQRQRLVPAFRQGNYSKGIF
                     DTIQAYVATLGASRGFSVEGIDQNFAVRRSG"
     gene            complement(605..1387)
                     /locus_tag="VGD38_04820"
     CDS             complement(605..1387)
                     /locus_tag="VGD38_04820"
                     /inference="COORDINATES: protein motif:HMM:NF014582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HEY0727370.1"
                     /translation="MASILLFGLLAAGANVVGGLVLVKSGMHRWGERFLKYLVALGAG
                     FMLAAIFIEILPESVAIWTNNARGDSASEAVLGAMTLLLAGYLLIQLVEHTIAPHFHF
                     GAETHPESFMRPSAAYTAVGGLWIHTFFDGVSIASAFLVNFKVGLLVFIAILLHKMPE
                     GFTVASIMLATGRSPKTALIATAAIGAATLAGVIAVAVLDSRMTYAVRYALPFSAGVT
                     LYVAASDLIPEVNHKEERNPTVSIVVFGGVALFYLLHKLIEG"
     gene            1626..2066
                     /locus_tag="VGD38_04825"
     CDS             1626..2066
                     /locus_tag="VGD38_04825"
                     /inference="COORDINATES: protein motif:HMM:NF014439.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727371.1"
                     /translation="MLRGNYTARIDVKGRLKVPTEFRRLMEEKHGKEFYITSLNGDCV
                     RIYPLPEWESIEQRLSLLPSMDPARRKFLDRTNYYGQQATVDNQGRLLSHPLLRKSAE
                     VIGDVAVLGYLTHLEVWELDKFRARMLADPYTEEDEAAIARLGI"
BASE COUNT          537 a          552 c          608 g          418 t
ORIGIN      
        1 tcccgatctg cgcacggcga aattctgatc gataccttcg acactgaagc cccggctcgc
       61 gccgagcgtc gcgacataag cctggatcgt gtcgaagatt cctttactgt agtttccctg
      121 tcgaaacgcc ggcacgagtc gttgacgttg aatctgaccg acaactccat ctgtcaaatc
      181 tccctcgagg tgtcgactca cttgcgtgaa gtacttacga tcctggagcg ccaccaccaa
      241 ccgaaacccg gccctgtcac cgtcccttgg gccaatcccc cagccccgcg caacagctat
      301 tgaaaagtcg aagatgtcgc gattgccagt cgtgggaacc gtcaacactg caaactcgat
      361 cttgccgcgc tctttgaggt tgttgtagat cgactcaagg cgcgacctgg tttccgcgtc
      421 gatgacattc gcggtgtcga cgataggcgt aaatggagtt ggaagaggaa cgggtgaggg
      481 cggagtcggc tgcgcactga cctgagtgac aaaaagcgaa aagactaaag ccagaaggcc
      541 gaagccaatc cgaaacgaat aataatttct caagcgcaaa ggcaatggcg aatcttcgtc
      601 agtgctagcc ctctatcagc ttgtgcaata aatagaagag agctacccct ccaaaaacga
      661 caattgatac cgtggggttt cgttcttctt tatggttcac ttcggggatc aggtcgctcg
      721 ctgcgacgta gagggtaacg ccggcggaaa aggggagtgc atatcgaacc gcataagtca
      781 tgcgagagtc aagcactgcg acggcgatca cgcccgcgag cgttgccgcg ccgatcgccg
      841 cagtagcgat caaagctgtt tttggcgaac gcccggtggc caacatgatc gaggcaaccg
      901 tgaatccttc gggcattttg tgcagcaaaa tcgcgatgaa cacgagcagg ccgactttga
      961 agtttacgag aaacgccgac gcgatcgaga caccgtcaaa aaacgtgtga atccagagtc
     1021 cgccgacggc tgtgtaggca gcagaaggcc gcatgaatga ttccggatga gtttcagcgc
     1081 cgaaatgaaa gtgcggcgcg atggtgtgct cgacgagttg aatgagcagg taaccggcca
     1141 aaagcagcgt catcgcgccg agcacggctt ccgaggctga gtcgccgcgg gcgttgttag
     1201 tccaaatggc gacgctttcg ggaagaatct cgataaagat cgcggcgagc atgaagccgg
     1261 cgccgagggc gacgaggtat ttcagaaagc gttcacccca ccggtgcatt ccggacttta
     1321 ccaacactaa gccgccgacg acgttcgcgc cggcggccag caaaccaaac aggagaatgg
     1381 acgccattgt aggtgggcca ctatagccga tctgtggagt ccgtgtaatc cgcggggcaa
     1441 aaaggcagac aaaaggcgaa catttcaagc cgaacactgt attgacagtg tctggcgtgc
     1501 agcgtagtat ccgaagtcgg gtggtcaaaa gtggtcggaa gtgggtccaa cctcgtagca
     1561 acaccgatca ttagcaacac ttttcctaaa ggccacccac caagcttctc gacaggtcat
     1621 gaaatatgct gcgaggaaac tacacggcgc gaatcgatgt caaaggtcgt ctcaaagtgc
     1681 cgaccgagtt ccggcgcctc atggaagaga agcatggcaa agagttttat atcacgagtt
     1741 tgaacggcga ctgcgtgcgg atttatccgc tgccggagtg ggagtcgata gaacaaaggc
     1801 tttcactgct gccgtcgatg gacccagccc gacgaaagtt ccttgataga acgaactatt
     1861 acggtcagca agcgacggtg gacaaccagg gacgcttgtt gagtcaccca ttgcttcgta
     1921 agagcgcgga agtaattggc gatgtggccg tgctcggtta cctgacgcat ttggaagttt
     1981 gggagctcga caagttccga gcccgcatgc tggcagatcc gtacaccgag gaagatgaag
     2041 cggcgattgc tcgacttggt atttagcgtg aacttggtac tttgtacttt gtgaagaaca
     2101 aagcaaagca caaag
//
LOCUS       DASWTX010000313         2866 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_308679, whole genome shotgun sequence.
ACCESSION   DASWTX010000313 DASWTX010000000
VERSION     DASWTX010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2866)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2866)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2866
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308679"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2316
                     /locus_tag="VGD38_04830"
     CDS             <1..2316
                     /locus_tag="VGD38_04830"
                     /inference="COORDINATES: protein motif:HMM:TIGR01733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEY0727372.1"
                     /translation="VPLDPRYPAERLAFRIEDAALKVLITHAGLRDRVDGSAVSAVIE
                     IEEEPWRGEETGNLQANVTIGNLAYVIYTSGSTGRPKGVAIEHHSAATLLHWARETFA
                     EEELQGVLASTSICFDLSVFEIFAPLSCGGQVILAENALALPALPAKEEVRLINTVPS
                     VLSELVRMAELPVGVRVVNLAGEALPRSLVDQLYEQKTIDRVVNLYGPTEDTTYSTFA
                     VLKRDESGRVVIGRPIANTQAYVVDAEGQVVPQGVTGELWLGGDGLARGYLKRAHLTA
                     EKFVPDGLSGRSGARLYRTGDLARYLADGRIDYLGRIDLQVKIRGFRIEPGEVEARVK
                     QHAAVRDAVVLTREGVDSDRQLVAYVVAEASLSHEALRHYLSEKLPDYMIPSAFILLD
                     EMPLTPNGKIDRQALLALAKNRTENETAFVAPRDALELRIARLWEDVLNTQPIGITDN
                     FFERGGHSLLAVRMVAQLSRQLGRELPLALILQKQTVQALAAFLRQEIERQDTSPLIA
                     IQTHGPRPPFFCVHPAGGGIICYSELSRHLGVDQPFYGIQTPGLDGVAQQPLTRIESM
                     AARYIEELRSVQSEGPYMLGGWSLGGVVAFEMAQQLRAEGHEVSLLALFDSHLGRSTE
                     VDDDALLLQFTSDISGLYDLEPETDLQSGTIEERLASLLDEVVRKGCAPPDLNLKQLM
                     RLFEVFRTNVRALLSYKPQFYPGRITLFRASEQIADLATDWLTISEGVEVHVVPGDHY
                     TLLREPAVQVMAERLKACIEQTSSELNTISV"
     gene            2357..>2866
                     /locus_tag="VGD38_04835"
     CDS             2357..>2866
                     /locus_tag="VGD38_04835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727373.1"
                     /translation="MHKYFFALLVLAIGCALTNAAMQGPEPVIFAEGVISTRDYESSI
                     TFTPDGKTAYFVKSTADLTFRVIVVSRFEQGKWTTPEVASFSGQYVDTDPCLSPDGKK
                     LFFASRRPVNGTTPKADYDLWVVELTNTGWNEPRHLNAPVNTDSQETSPSPAADGTLY
                     FSSNRAGGKG"
BASE COUNT          602 a          814 c          881 g          569 t
ORIGIN      
        1 gtcccgctcg acccgcgtta tccggcggag cggctggcgt tcaggattga agatgcggcg
       61 ctgaaggttt tgattacgca cgcaggtttg cgcgatcgcg tcgacggtag cgctgtgagc
      121 gcagtgattg agatcgaaga agagccctgg cgcggtgaag aaaccgggaa tctgcaagca
      181 aacgtgacga tcgggaatct tgcgtacgtg atctacacct cgggttcgac gggacgtccg
      241 aaaggcgtag ccatcgaaca tcacagtgca gcgacgttgc tgcactgggc gcgcgagact
      301 tttgctgaag aagagttgca gggtgtgctg gcgtccactt cgatctgttt cgatctgtcg
      361 gtgtttgaaa tcttcgcgcc gttgagttgc ggcggacaag tgatcctcgc ggagaatgcg
      421 ttggccctgc cggcgctacc ggcaaaagaa gaagtgcggc tcatcaacac ggtcccatcc
      481 gtgctcagcg agttggtgcg catggccgag ctaccggttg gcgtgcgagt tgtaaacctg
      541 gcgggcgagg cattgccgcg ctcgttggtg gaccagttgt acgagcagaa gacgatcgac
      601 cgcgtcgtaa atctctatgg accaacagag gacacgacgt actccacttt cgcggtgttg
      661 aagcgcgacg agtcagggcg cgtggtgatc gggcggccga tcgccaacac gcaggcgtat
      721 gtcgtagacg cggagggcca ggtcgtgccg caaggagtaa cgggcgagtt gtggctcggc
      781 ggcgacggat tagcgcgcgg atatctgaag cgggcgcacc tcacagccga gaagtttgtg
      841 cctgatggac tgagcggccg cagcggagcg cgtttgtacc ggacgggcga cctcgcacgc
      901 tacctcgccg atggcaggat cgactacctg ggccgcatcg atctgcaggt aaagattcgc
      961 ggtttccgca tcgagcccgg tgaagtcgaa gcgcgggtaa agcaacacgc ggcagtgcgt
     1021 gacgctgtgg tgctgacacg cgaaggagtc gatagcgatc ggcagctggt ggcgtacgtc
     1081 gttgctgagg cgagccttag ccacgaagcc ttacgtcact acctgagcga gaagttgccg
     1141 gactacatga tcccgtcggc atttatcctg ctcgacgaga tgcctttaac tcccaacgga
     1201 aagatcgata ggcaggcact gctcgctctc gccaaaaaca gaaccgaaaa cgagaccgct
     1261 tttgtagctc cacgcgatgc gttggaactt cgaatcgcgc gcttgtggga agacgtcctc
     1321 aacactcagc ccatcgggat caccgacaac ttcttcgagc gtggcggtca ctccctgctg
     1381 gctgtccgca tggtggccca actgtctcgt caactcgggc gagagttgcc ccttgcgctg
     1441 attctgcaga agcaaaccgt tcaggcactc gcggcattcc tgcggcagga gatcgagcga
     1501 caagacactt cgccgctgat cgcgattcag acgcatggtc caaggccgcc gttcttctgc
     1561 gttcatccgg ccggcggcgg catcatctgc tactcagaac tgtcgcgcca tctcggcgtt
     1621 gaccaacctt tctacggaat ccaaacaccc ggactcgatg gcgtggccca acaaccgctc
     1681 acccgaatcg agtcgatggc cgcgcgctac attgaagaat tgcgcagcgt gcagagtgaa
     1741 gggccataca tgctgggcgg ctggtcgctc ggcggagtgg ttgctttcga gatggcgcag
     1801 cagctacgcg ccgaaggtca cgaggtgtcg ttgcttgctc tgtttgatag tcatctgggg
     1861 aggtcgacgg aggtcgacga cgacgcgctg ttgctgcaat tcacatccga catcagcggc
     1921 ctctacgacc tcgaaccgga aaccgatttg caatcgggca cgatcgagga acgcctcgcg
     1981 tctctgctgg acgaggtcgt gcgcaaaggg tgtgcgccgc ctgacctgaa cctcaaacaa
     2041 ctgatgcggc tgtttgaagt ctttcggact aacgtacgtg cgctgctgag ttacaagcct
     2101 caattttatc cgggccgaat cacgctcttt cgtgcgagcg aacagattgc cgacctcgcc
     2161 acagattggt tgactatcag cgaaggagtc gaagtacatg tcgtgcccgg cgaccactac
     2221 acgctgttga gagagccggc ggtgcaagtc atggctgaga ggctgaaggc ttgcatcgag
     2281 cagaccagca gcgaactgaa tacgatctcg gtctgataca atgccgcctc caccttgcgc
     2341 gtagaggaag gctcacatgc acaaatactt ctttgcgcta ctcgtgctgg cgatcggatg
     2401 cgctttaaca aacgcggcga tgcagggacc tgagccggtc atctttgctg aaggcgtgat
     2461 ctccacacgc gattatgaat cgagcatcac tttcacgccg gacggcaaga ccgcttactt
     2521 cgtaaagtcg acggccgacc taacgtttcg tgtcatcgtg gtctcgcgat tcgagcaggg
     2581 caagtggacc acgccggaag tcgcttcatt ctcaggacaa tacgtcgaca ccgatccgtg
     2641 cctttcaccg gatggaaaga aacttttctt tgcctcgcgc cgtcctgtta acggcactac
     2701 gcctaaagcc gattacgatc tctgggtcgt ggaactgacg aacacgggat ggaacgaacc
     2761 gcgtcatctc aacgcgcccg tgaacactga cagccaggag acatcaccgt cgccggcagc
     2821 agacgggacg ctctacttca gttccaaccg cgccggcggc aaaggt
//
LOCUS       DASWTX010000314         1523 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_395273, whole genome shotgun sequence.
ACCESSION   DASWTX010000314 DASWTX010000000
VERSION     DASWTX010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_395273"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1101
                     /locus_tag="VGD38_04840"
     CDS             <1..1101
                     /locus_tag="VGD38_04840"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HEY0727374.1"
                     /translation="SAMIEARVIRWLCDLLDYGPRSFGTLASGGSEANLIALKCARDR
                     AAATIKEDGVRSAASDLVVYASEQCHYSIDKSVDLLGMGRASLRKIPTDDRFHIRTDV
                     LRDQIARDRAEGRLPCCLVGVAGTTSTGVIDPLDHLAVIARESELWLHVDAAYGAPLA
                     FSSKHREKLRGIALADSITFDPHKWMFVPFACGATLVREGGRVLRDSFDMSPEYLSED
                     RGGADVEFDFFRYGQMGTRRFNSLKLWMALKFMGREGYAQTVERQIDLTNYLASQLDR
                     LPGFKRLGEVETAVCCFRYLPDSVSALDGIEQDRVQQRLQQTIERSGEAWLTTTVLHG
                     RRAMRVNINSFLTEQRHVDVLLAALQRAASTL"
     gene            1098..>1523
                     /locus_tag="VGD38_04845"
     CDS             1098..>1523
                     /locus_tag="VGD38_04845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727375.1"
                     /translation="MKLIGLFFLLLLIPVPLAAQRSLPAIKSQTDFDALSVTYDANTP
                     YALPHLMFVIDRKDNNKIYYVNKKRYSFHKDFVNGTYLSLERGREFFENNYIKPNRRF
                     ILGTIAYQTPLRRWTFEFWEGDLIPADQIQLADDVLNQTF"
BASE COUNT          306 a          449 c          427 g          341 t
ORIGIN      
        1 tcggccatga tcgaagcgcg tgtgattcgc tggctgtgcg atctgctcga ttatggtccg
       61 cgcagttttg gtacgttggc gagtggtggt tcggaagcga acctgatcgc gttgaagtgc
      121 gcgcgcgatc gagctgcggc aacgatcaag gaggatggtg tgcgatcggc ggcgagcgat
      181 ctggttgtgt acgcttccga acagtgtcac tactcgatcg acaagagcgt tgatctgttg
      241 ggaatggggc gcgcgagtct gcgcaagatt ccaactgacg accgcttcca cattcgcacc
      301 gacgtgttac gcgatcaaat cgcgcgtgat cgtgccgaag gccgcttgcc gtgctgcctc
      361 gtcggcgtag ccggcactac atcaacgggc gtgatcgatc cgctcgacca tctggctgtc
      421 atcgctcgcg aaagcgagct ctggttgcac gtcgatgccg cgtacggtgc tccgctcgcg
      481 ttttcctcga agcatcgcga gaaactgcgc ggcatcgcgc tggctgattc gatcacgttc
      541 gatccccaca agtggatgtt tgtgccgttc gcttgcggtg cgacactcgt gcgcgagggc
      601 gggcgcgtgt tgcgcgactc gtttgatatg agccctgaat atttaagcga ggaccgcggc
      661 ggcgctgacg tggagtttga tttctttcgt tacgggcaga tgggcacgcg tcgtttcaac
      721 tcgctgaagc tctggatggc gctgaagttc atgggccgcg aaggatacgc gcaaacggtt
      781 gagcggcaga tcgatctgac gaactatctc gcgtcccaac tcgatcggct gccgggtttc
      841 aagcgtcttg gtgaagtcga aacagcggtc tgttgctttc gttacctgcc cgactccgtt
      901 tcggcgttgg acggcatcga acaggatcgg gtgcagcagc gattgcagca gacaattgaa
      961 cggagcggtg aagcatggct cactacaact gtcctgcacg gacgccgcgc gatgcgcgtg
     1021 aacatcaaca gtttcctgac cgaacagcgc cacgtggatg ttttgttagc ggcgctccaa
     1081 cgcgccgcct caacattatg aaactaattg gccttttctt tttattgctt ttgatccctg
     1141 tccctctggc cgcgcaacgg tcgctacccg cgataaaatc tcaaaccgac ttcgacgcgc
     1201 tctcagtcac ctacgacgcc aacacccctt acgccctccc gcacctcatg ttcgtgatcg
     1261 atcgcaaaga caacaacaag atctactacg tcaacaaaaa gcgctacagc tttcacaaag
     1321 acttcgtcaa cggcacctac ctctccctcg aacgcggccg cgagtttttc gaaaacaact
     1381 acatcaaacc taaccgccgc ttcatcctcg gcacgatcgc gtatcaaaca cctttgcgcc
     1441 gttggacctt cgaattttgg gaaggcgacc tgatccccgc ggatcagatc cagctcgcgg
     1501 acgacgtcct caaccaaacc ttc
//
LOCUS       DASWTX010000315         2726 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_176996, whole genome shotgun sequence.
ACCESSION   DASWTX010000315 DASWTX010000000
VERSION     DASWTX010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2726
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176996"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2046)
                     /locus_tag="VGD38_04850"
     CDS             complement(<1..2046)
                     /locus_tag="VGD38_04850"
                     /inference="COORDINATES: protein motif:HMM:TIGR01701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FdhF/YdeP family oxidoreductase"
                     /protein_id="HEY0727376.1"
                     /translation="MKKSKTAGGVPAIIETFKVVSSEMGLIRGARTMLKVNQTGGVDC
                     PGCAWPEPDRERSHFEFCENGAKHIADEATTKRVTPEFFQQWSVADLALQSDQWLGAQ
                     GRITHPMLLRRGATHYEQVSWDAAFELLSAELNSLNYPDQAIFYTSGRASNEAAFLYQ
                     LFVRQFGTNNLPDCSNMCHESSGTALTEAIGVGKGTVTLEDFDRAEAIFVIGQNPGTN
                     HPRMLSALQRAKRNGCKLVHINPLPEVGMTRFKHPQQVFGLLGAGTELADLFLQVRIN
                     GDVALLKGIMKAVVASGSLEREFIETYTTGFEEFKTALARVSWEEIVAQSGVAQDQIQ
                     TAAEIFDKSERTIFCWAMGLTQHRNAVANIQEIVNLMLLRGQIGKPGAGLCPVRGHSN
                     VQGDRTVGIWERPTATFLDRLGEEFGFEPPRNHGLDTVKAIQAMHDGEAKVFFALGGN
                     FLSATPDTEFTSAALRRCRLTAHVSTKLNRSHLVTGDRALILPCLGRTEIDGQATGPQ
                     FVTTENSMGVVQMSQGSLEPASSELLSEPQIVARLAKATFEHRTTVDWEQLAANYDLV
                     RDAIERVVPGFENYNERVRKPGGFYLPNAARERVFKTPSGKAVFTVHSLPDHRLEPGQ
                     FLMMTIRSHDQFNTSVYTENDRYRGISNNRRVVFLNQEDFEAAGLKAQQVVDLVSHFN
                     "
     gene            2116..>2726
                     /locus_tag="VGD38_04855"
     CDS             2116..>2726
                     /locus_tag="VGD38_04855"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004181 - metallocarboxypeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family zinc carboxypeptidase"
                     /protein_id="HEY0727377.1"
                     /translation="MTLPRPVRSLLIYVFFLTTFANIANAQIKPGRDPNQPVDQEYTN
                     KIREYTTAPYFNSPLTDYLPASPDVPTPKAVLGDVAGAPGKLPYAEDVYKYMRMLERA
                     TPRVKVYSIGTTEEGREMIAVAVGSEQLINRLEENRARLTKLADPRSISMNDDEADRI
                     VADTFPVYYITGAIHSTETGSPTALMELAYRLAVDNSPYVKYIR"
BASE COUNT          607 a          887 c          675 g          557 t
ORIGIN      
        1 attgaaatga ctgacgaggt cgacgacctg ctgcgctttc aaacccgctg cttcaaagtc
       61 ttcctgattc aggaaaacca cgcggcggtt gttgctgatg ccgcgataac gatcgttttc
      121 agtgtagacc gaagtattga actggtcgtg actgcgaatc gtcatcatca aaaactgtcc
      181 gggctcgagc ctgtgatccg gcagcgaatg aactgtaaac acggccttgc ccgacggcgt
      241 cttgaacaca cgctcgcgcg cggcattggg caagtagaac ccgccgggct tgcgcacccg
      301 ctcgttgtag ttttcaaaac ccggcacgac gcgctcaatc gcgtcgcgaa cgagatcgta
      361 gtttgccgca agctgctccc aatcaacagt cgtgcggtgc tcgaacgtcg ctttcgcgag
      421 gcgcgccacg atctgtggct cgctcaacaa ctcggaagaa gcaggctcga gtgaaccttg
      481 cgacatctgg accacgccca tcgagttttc cgtcgtgacg aactgtggac cagtcgcttg
      541 cccatcgatc tcagtgcgcc cgagacacgg aagaatcaaa gcgcgatctc ccgtgacgag
      601 gtgcgaacga ttcaacttcg tggagacgtg agccgtcaag cggcaacggc gcaacgcggc
      661 gctggtgaat tccgtgtcag gcgttgctga gagaaaattc ccacccagcg cgaagaagac
      721 tttcgcctca ccatcgtgca tcgcctggat cgccttcacg gtatctaatc cgtgattgcg
      781 cggcggttca aacccaaatt cctcacccaa tcgatctaaa aacgtagccg tcggccgctc
      841 ccaaatccca accgtgcgat caccctgcac gttgctgtgc ccacgcaccg gacacaaacc
      901 cgcgcccggt tttccgatct gcccacgcag caacatgaga ttaacgatct cctgaatgtt
      961 cgcaaccgcg ttgcggtgct gcgtcaatcc catagcccaa cagaagatcg tgcgttctga
     1021 cttatcaaaa atttccgccg ctgtttggat ttgatcctgc gctactcccg attgcgcaac
     1081 aatttcctcc caactgactc gcgctagcgc cgtcttgaac tcctcgaacc ccgtcgtata
     1141 cgtctcgata aactcacgtt ccaacgaacc gctcgccacc accgccttca tgatcccctt
     1201 cagcagcgcc acatcgccat tgattcgcac ttgcagaaac agatccgcca gctcagtgcc
     1261 cgcgccgagc aacccaaaca cttgttgcgg atgtttgaag cgcgtcatcc cgacttccgg
     1321 cagcggattg atatgcacga gcttgcaacc gttccgcttc gcacgctgca gcgcgctcaa
     1381 catgcgcgga tgattcgtgc cagggttctg accaatcaca aagatcgctt ccgcgcgatc
     1441 gaagtcttcg agcgtgaccg ttcccttccc aacgccaatc gcttcggtaa gcgccgtgcc
     1501 gcttgattcg tggcacatgt tcgaacaatc aggcaggttg ttcgtcccaa actgccgcac
     1561 aaacagttga taaagaaaag cagcctcgtt actcgcgcgc cccgacgtgt agaaaatcgc
     1621 ctggtcggga tagttcaacg aattgagttc cgccgaaagc agctcaaacg cagcgtccca
     1681 actcacctgc tcgtaatgcg tcgcaccacg ccgcagcaac atcggatgcg tgatcctgcc
     1741 ctgcgcgccc agccactgat ccgattgcag cgccagatcc gccacactcc actgctgaaa
     1801 aaactccggc gtgacgcgct tcgtcgtcgc ttcatcagcg atgtgcttcg cgccgttttc
     1861 gcaaaactca aaatgcgaac gctcgcgatc gggctccggc cacgcgcaac cgggacagtc
     1921 gacaccgccc gtttgattga ccttcagcat cgtgcgcgcg ccgcgaatca gtcccatctc
     1981 tgacgagacg actttgaacg tctcgatgat cgccggtacc ccgcctgcag ttttactctt
     2041 cttcattctt taacagatta cacggttgac ttcgctgttc ccaatagcta aaaaggctga
     2101 ccgaggaaaa actatatgac ccttccgcgt cccgtccggt cgctccttat ctacgttttc
     2161 tttctaacga ctttcgccaa catcgccaac gcccaaatca agccgggccg cgatcccaat
     2221 caaccggtcg atcaggaata caccaacaag attcgcgagt atacaaccgc gccctacttc
     2281 aactcgcccc tgaccgacta cttgcctgcg tcgcccgacg tgccgacgcc gaaagccgtt
     2341 ctcggcgacg tcgcaggcgc acccggaaag ttgccgtatg cggaagacgt ttacaagtac
     2401 atgcggatgc tggagcgcgc cactccgcgc gtgaaggtct actcgatcgg caccacggaa
     2461 gaaggccgcg agatgatcgc cgtcgccgtc ggctcggaac aactgatcaa caggctcgaa
     2521 gaaaaccgcg cccggctcac gaagctcgcc gatccgcgat cgatcagtat gaatgacgac
     2581 gaagcggatc gaattgtcgc cgatacgttt ccggtttact acatcaccgg cgcgatccac
     2641 tcgaccgaaa ccggttcgcc gaccgcgttg atggagctcg cgtatcgtct cgcggtcgac
     2701 aacagtcctt acgtgaaata cattcg
//
LOCUS       DASWTX010000316         2646 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_48834, whole genome shotgun sequence.
ACCESSION   DASWTX010000316 DASWTX010000000
VERSION     DASWTX010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2646)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2646)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2646
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48834"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1188
                     /locus_tag="VGD38_04860"
     CDS             <1..1188
                     /locus_tag="VGD38_04860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727378.1"
                     /translation="LGLLLQLVYRKELVEGARGLLQDLSAFNILSVLLTTIGGFGLLF
                     SLYISSAIRCYNRISVYIAFFCFMAVGIGLEALYRRLTNGRSIFYAALAVFLVIGFLD
                     QTSLWYVPSYAYNKADFSSDEQFVQQIESSVPAGSMIFQLPYVQFPETPAFNKMVDYD
                     HFRGYVHSKNLRWSYGAIKNRDVDRAQQRVASLPPEELVQNIVFAGFTGLYVDRFGYQ
                     DNGAAMEAELTNIVKAKPLTSQNGRLLFFNLADYGRSLREKYSDSEWETKKELSFHPI
                     LLDWKGGFSDLETGPAKTWRWCSSEGELRIKNTSRLPRTIKLEMAFATGYPELDEFTM
                     SGFISEQLRVGNVPVPYSTTVTVPPGESIIRFRSAAKRIDEPRDPRVLVFRIEDFKMT
                     ELQ"
     gene            1326..2345
                     /locus_tag="VGD38_04865"
     CDS             1326..2345
                     /locus_tag="VGD38_04865"
                     /inference="COORDINATES: protein motif:HMM:NF025314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4214 domain-containing protein"
                     /protein_id="HEY0727379.1"
                     /translation="MRKCFFAILVVIFAFGGVVMAQSPPTLRIVTETPNLPSELFYGD
                     VKVKPLRLRPGTNIPITIDDADFFAAQHYIDFLRRFPDAPGWAHWTGEITECSDPAKR
                     RPGESEALCTDRKRTNTSAAFFVSPESQNSASFVIRVYWGTLGKLENAQCPGVPQNLP
                     ASCRPLYSEFIADMAEVNKGIVVNDALSPSGINANKRAFVDKFVTRPDFQAAYGNLNA
                     TQFVDKLAQTTGVALSSADRTALINEASTPANRASVVFKVVDGTQATTGGTLIFQTTY
                     GEQFYNKEFDTVFVFMEYLGYLRRNPDQDGFNHWLGKLKFFGNWVDAEMVRSFIISPE
                     YRSRF"
     gene            complement(2342..>2646)
                     /locus_tag="VGD38_04870"
     CDS             complement(2342..>2646)
                     /locus_tag="VGD38_04870"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024914.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0727380.1"
                     /translation="SSSCRAFVYPSVYEGFGLPPLEAMACGAPVIASRVPSIKESVAR
                     IVSATDSMKLAEVIVELLTDEQARRSLSERGIEHAREFSWQRTAALTCEVYAEALR"
BASE COUNT          600 a          748 c          705 g          593 t
ORIGIN      
        1 ctcggcctgc tgcttcagtt ggtgtaccgg aaagagttgg tcgagggcgc gagaggactg
       61 cttcaggatc tcagcgcctt caacattctc tccgtgctgc tgacgaccat cggcgggttt
      121 ggcttgctgt tctcgctgta catctcgagc gcgatcaggt gctacaaccg catcagtgtc
      181 tacatcgcgt tcttttgctt catggcggtt ggaatcggcc tcgaagcgct ttatcgacga
      241 ctcacgaacg gccgcagcat cttctatgcg gcgctcgcgg tgtttttagt gatcggattt
      301 ctcgaccaaa cgagtctctg gtacgtccca agttatgcgt ataacaaggc cgacttctcc
      361 agcgacgaac aattcgtgca gcagatcgag tcgtcagtgc cagcggggtc gatgatcttt
      421 caattgccgt atgttcagtt tccggaaaca ccggcattca acaagatggt cgattacgat
      481 cacttccgcg gttacgtgca ttcgaaaaac ctgcgctgga gttacggagc gatcaaaaac
      541 cgcgacgttg accgggcgca gcagcgagtt gcgtctttac cgccggaaga attggttcaa
      601 aacatcgtgt tcgccggttt cacggggctc tacgtcgatc ggtttggtta ccaggacaac
      661 ggcgccgcga tggaagcgga actgaccaac attgttaagg ccaaaccgtt gaccagtcag
      721 aatggcaggc tgctcttttt caatctcgcc gattatggta gaagcctacg tgaaaaatat
      781 tcggacagcg aatgggagac gaagaaagag ttaagcttcc atcccatact cctcgattgg
      841 aagggcggtt tttccgacct cgagaccgga ccggcgaaga cctggcgctg gtgttccagt
      901 gaaggagagc tgcgaatcaa gaacacgtcg cggctgccgc ggactatcaa gctagagatg
      961 gcttttgcaa cgggataccc ggaattagac gaattcacga tgagtggctt tatctcggaa
     1021 cagctcagag tgggtaatgt tccggttccg tattcgacga ccgtgacagt gccgccgggt
     1081 gagtcgatca ttcgcttccg gagcgccgcg aaacgcattg acgaaccgcg cgacccgcgc
     1141 gttctcgtgt ttagaataga agacttcaaa atgaccgaat tgcaatagaa acctgattga
     1201 caatggaaag ttcgtttacc tatactcaaa ccggctttag cgattgtagg ccaagagtga
     1261 ccccagcctc aggttctcta tctttcaacg acaaatccca ccgtctgtta gtaggagtaa
     1321 cgttcatgcg gaaatgcttt tttgcgattt tggttgtgat cttcgctttt ggtggtgtgg
     1381 tgatggcgca aagcccaccg accctgcgga tcgtgaccga aactcccaat ctcccgtccg
     1441 aactctttta cggcgatgtc aaagttaagc cgctgcgtct gaggcccggc accaacatcc
     1501 cgatcaccat cgacgacgcc gatttctttg ccgcccaaca ttacatcgat ttcctgcgcc
     1561 gcttcccgga tgctcctggt tgggctcact ggactggtga aatcaccgag tgcagcgatc
     1621 ctgccaaacg ccgtcccggt gaaagcgaag cgctttgtac cgatcgcaag cgaaccaaca
     1681 cgtcggccgc gttcttcgtg tcgcctgaat ctcagaacag cgcgtcgttt gtcattcgcg
     1741 tttactgggg cacgttaggc aaactcgaaa atgcgcagtg cccgggtgtt ccgcaaaact
     1801 tgccggcgtc gtgcagaccg ctgtacagcg agttcatcgc cgacatggcg gaagttaaca
     1861 agggtatcgt cgtgaacgac gcgctttcac cgagcggtat caacgccaac aagcgcgcct
     1921 tcgtcgacaa gtttgttacc cgtccggact ttcaggccgc ctacggcaac ctgaacgcga
     1981 cgcagtttgt cgacaaactc gcgcaaacca cgggtgtcgc actttcgagc gccgatcgca
     2041 ccgctttgat caacgaagcc agcaccccgg caaacagagc aagcgtggtg ttcaaagtgg
     2101 tcgatggcac gcaggcgacc accggcggaa cgctcatttt ccagaccacc tacggcgaac
     2161 agttctacaa caaagagttc gacaccgtgt ttgtgttcat ggaatacctg ggctatctgc
     2221 gccgcaaccc tgaccaggac ggtttcaacc actggcttgg caagctgaag ttcttcggca
     2281 actgggttga cgctgagatg gtgcgatcgt tcattatctc gccggagtat cgcagccgct
     2341 tctaacggag cgcctcggca taaacttcgc aggtcagcgc tgctgttcgt tgccaggaaa
     2401 actcccgcgc gtgttcaata ccacgctcgg acaacgatcg acgcgcttgc tcgtcagtca
     2461 gtaactcgac aattacttct gctaacttca tggaatccgt ggccgaaaca attcgcgcca
     2521 cggattcttt tatgctcgga acccggctcg cgatcaccgg cgcgccacac gccatcgcct
     2581 ccaacggcgg taaaccaaaa ccctcataca ccgacggata aacaaacgcg cgacacgatg
     2641 aagaca
//
LOCUS       DASWTX010000317         3651 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_26814, whole genome shotgun sequence.
ACCESSION   DASWTX010000317 DASWTX010000000
VERSION     DASWTX010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3651
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26814"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..200
                     /locus_tag="VGD38_04875"
     CDS             <1..200
                     /locus_tag="VGD38_04875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727381.1"
                     /translation="TLSCNCEDSTYDKQLICAIYAERGRKKPDGNLAYFGKSSPSVQA
                     GVAKRFQNEQQDALKMLATET"
     gene            222..923
                     /locus_tag="VGD38_04880"
     CDS             222..923
                     /locus_tag="VGD38_04880"
                     /inference="COORDINATES: protein motif:HMM:NF042734.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta family hydrolase"
                     /protein_id="HEY0727382.1"
                     /translation="MPDETEELIVKVNDKESVTALLYPAAKKIRAGLTALLGHGAGAN
                     QLSGFMRMFARGLAERGLDVMTFNFIYMEQGRSVPDQKPKLESCFRAVIETIAKHRKL
                     KSNRLVIGGKSMGGRIASQVVAAREDEPLALDVSGLVFLGYPLHPPGQTAKLRVEHLE
                     HIQKPMLFVQGTRDALGTPEEIQPFVKDLHPPAEIYAIEGGDHSFKAPKKFGVPQEQI
                     YENALDEIVRWAVAI"
     gene            complement(996..1802)
                     /locus_tag="VGD38_04885"
     CDS             complement(996..1802)
                     /locus_tag="VGD38_04885"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEY0727383.1"
                     /translation="MFNNLIESSSHAREYNRRGSFLLITGATYLVMFVVAGVASIYAY
                     DARLEQQILEEVTLLSPQEFPTQEVAPAARPDRPRETSETNRLPERAVAMVSVNRPEV
                     VPTDVSATPSKNLPLPDHGSALITGRDVNPESIGGPTRGTGNGTGQAAAQPPRVIIPD
                     EPPPVPEPTPVVPKTLKVSVVLNSRALSLPQPTYPPLAKNIRLQGTVIVQVLINEEGN
                     VVSAKATSGHPMLVPEAQRAAMRARFSPTVLGDQKVKVQGVITYNFILGN"
     gene            1958..3226
                     /locus_tag="VGD38_04890"
     CDS             1958..3226
                     /locus_tag="VGD38_04890"
                     /EC_number="1.4.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HEY0727384.1"
                     /translation="MATQKAFQEELNPFEIAKQQFNRAADYLDLDASMRHVLQNAKRQ
                     LIVSIPVKMDGGDVQVFEGYRVQHNIARGPAKGGIRYHPNVTLDEVKALASWMTWKCA
                     TVGIPYGGGKGGVICDPKSLSRNELERLTRRYAFEIAPIIGPDRDIPAPDVYTDEQTM
                     AWIMDTISMVRGHTELGVVTGKPISLGGSQGRAEATARGCLYALREACRVKNMSLKDS
                     RVVVHGFGNAGANIARLVAEDGAKVIAACDSKMAVYAENGIDVAEALKHKAETGSLIG
                     LRGTKEKPCEDVLEMECDILLPSALENAITLKNVGNVKTKIIAELANGPTTPGADRVL
                     EDQGVMLIPDILANAGGVTVSYYEWVQDQYSFFWSEKQINDTLEQTINTAFDSVYKMA
                     QHHNTDMRTGAYILAVGRVAEATSVRGIFP"
     gene            3280..3579
                     /locus_tag="VGD38_04895"
     CDS             3280..3579
                     /locus_tag="VGD38_04895"
                     /inference="COORDINATES: protein motif:HMM:NF015893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC/Spx/MgsR family protein"
                     /protein_id="HEY0727385.1"
                     /translation="MDKLLRESGVPFEKVNYYVEPLSKKKLTELVRKLGMKPRELLRK
                     SEPVYKELGLANGEFSDSELIALMVEHPDLLQRPIVERGDRAVLARPVERVLDLL"
BASE COUNT          809 a          983 c         1108 g          751 t
ORIGIN      
        1 cgacgctgag ctgtaattgt gaagattcga cttacgacaa acaactcatt tgcgccatct
       61 acgctgaacg aggtcgcaaa aaaccggacg gcaatcttgc ttactttggg aagagctcgc
      121 cgagcgttca agccggtgta gcgaaacgct ttcagaacga acagcaggac gcattgaaga
      181 tgctcgcgac cgaaacctaa ccagccaaac ccaaatcaaa catgcctgac gaaaccgaag
      241 agctaatcgt taaagttaac gataaagaat ccgtgaccgc gcttctttat cctgcggcga
      301 aaaagattcg cgccggcctg accgcgttgt tgggccacgg cgccggcgcg aaccagttga
      361 gcggtttcat gcgcatgttt gcacgcggcc tggccgagcg tggtctggac gtgatgacgt
      421 tcaacttcat ctacatggag cagggacgtt cagttccgga tcaaaagccg aagcttgaat
      481 cgtgttttcg ggcagtaatc gaaacaatcg cgaagcaccg gaagctgaag agcaaccggc
      541 tggtgatcgg gggcaagtcg atgggcggac gaatcgcgtc gcaagttgtt gcggcgcgtg
      601 aagacgaacc gctcgcgctc gacgtgagcg ggctcgtgtt tctcggttac ccgctgcatc
      661 cgccagggca gacggcgaag ttgcgcgtcg agcatctgga acacattcaa aagccgatgc
      721 tgtttgtgca gggcacgcgt gatgcgctcg gcacgcccga agagattcag cctttcgtta
      781 aagacctgca tccgcccgcg gagatctacg cgatcgaagg cggcgatcat tcgttcaaag
      841 cgccgaagaa gtttggcgtg ccgcaggagc agatttacga gaacgcgctc gacgagatcg
      901 ttcgttgggc cgtggctatt tagaccacgg atttcaaagg cgggaagagg tacgagaacc
      961 atgcagtctc gtacctcttt gcgttggcgg gggattcagt tcccgagtat gaagttgtaa
     1021 gtaatcactc cctggacttt gactttttga tctccgagca ccgtcggcga gaagcgcgct
     1081 cgcatcgcag ctctctgcgc ttccggaacg agcatcgggt ggcccgatgt ggccttcgcc
     1141 gagacgacgt tgccttcttc attaatcaac acctgcacga tcaccgttcc ctgaagtctg
     1201 atgttttttg ccaacggtgg ataggtcggc tgcggtaaag agagcgcccg gctattcagc
     1261 actaccgaga cttttagagt ctttgggacg accggggttg gctctggcac gggcggtggt
     1321 tcgtcaggaa ttatcactcg tggcggctgc gcagctgctt gcccggtacc gttgccagtg
     1381 ccacgagttg gcccaccaat cgattcgggg ttgacgtcac ggccggtgat taaagcactg
     1441 ccgtgatctg gaagtggtag gtttttgctc ggcgttgccg aaacgtcggt cggcacaact
     1501 tcagggcggt tgacgctgac cattgcgact gcgcgttccg gtaagcgatt cgtctcgctc
     1561 gtctctcgcg gacgatccgg acgcgcagcg ggcgcaactt cctgggtcgg aaactcttga
     1621 ggcgatagca acgtcacctc ttcgagaatc tgctgttcca gacgtgcgtc gtaagcgtaa
     1681 atactcgcca cgcccgcaac cacaaacatc acgagataag tggcaccggt aatgagcagg
     1741 aacgatccgc gacgattgta ttcccttgcg tgcgaactgg attcaatcag gttattaaac
     1801 atcgagtcct ccgcttagtt gccggtgcca tcgggtcgcg ggagcttact cagcctcttt
     1861 agacaccggt cgcgcccgtg ggttcccttg aactctgacc cgtaaccaca taggatcagc
     1921 gccgctctca cagccccatt taccaggagc ggaatacatg gcgactcaaa aggcctttca
     1981 ggaagagcta aatcccttcg aaattgccaa acagcagttc aaccgggcag ccgactatct
     2041 cgacctcgat gcgtcgatgc ggcacgtgct gcagaatgcc aagcgacaat taattgtctc
     2101 catcccggta aagatggacg gcggagacgt gcaggtgttc gagggttatc gcgtgcagca
     2161 caacatcgcg cgtggtccag cgaagggcgg tattcgttat cacccaaacg tcacgctcga
     2221 cgaagtcaaa gcattggctt cgtggatgac gtggaaatgt gcgactgtgg ggattcctta
     2281 tggcggcggc aaaggcggtg tcatttgcga tccgaagagt ctgtcgcgca acgagctgga
     2341 gcgactgacg cgccgttacg cttttgagat cgcgccgatc attggaccag atcgcgatat
     2401 tcccgcgcct gatgtttaca cagacgaaca gacgatggcg tggatcatgg acacgatctc
     2461 gatggtgcgc gggcacactg agctcggcgt cgttaccggt aaaccgattt cactcggcgg
     2521 ctcgcaagga cgcgctgaag caactgcgcg cgggtgtctt tatgctttgc gcgaagcgtg
     2581 ccgtgtgaag aacatgagtt tgaaagactc gcgtgtggtc gtgcacggct ttggcaacgc
     2641 gggcgcaaac atcgcgcggc tcgtcgctga agacggcgcg aaggtgatcg cggcttgcga
     2701 ttcaaagatg gcggtttatg cggagaacgg catcgacgtc gcggaagcgt tgaagcacaa
     2761 agctgaaact ggttcgttga tcgggcttcg cgggacgaag gaaaagccat gtgaagacgt
     2821 tctcgaaatg gagtgcgaca ttcttttgcc atccgcgctg gagaacgcga tcacgttgaa
     2881 gaacgtcggc aatgtgaaga ccaagatcat cgcggagctt gcgaatggtc caacgacgcc
     2941 gggcgccgat cgcgtgctcg aggatcaggg cgtgatgctc atcccggaca ttctcgcgaa
     3001 tgcgggtggt gtgacggtga gttactatga gtgggtgcag gatcagtatt cattcttctg
     3061 gtcggagaag cagatcaacg acactctcga gcagacgatc aatactgcat tcgactcggt
     3121 gtacaagatg gcgcaacatc acaacaccga catgcggacc ggcgcgtaca ttctcgccgt
     3181 cggccgtgtt gcagaagcga cgagcgtgag aggaatattc ccgtaatgcc tgacaagatc
     3241 acagtctacg aaaaaccgac ttgaacgaag tgtcgcgaga tggacaagct gctccgggag
     3301 agtggtgttc cgtttgagaa agttaattac tacgtcgagc ctttgagcaa gaagaagctc
     3361 actgagctgg ttcgcaaact cggtatgaag ccgcgcgagt tgctgcgcaa gagcgagccg
     3421 gtttacaagg agttgggttt agcgaatggc gaattcagcg acagcgaact gatcgcgttg
     3481 atggtcgagc accccgatct cctgcagcgc ccgatcgtcg agcgcggcga ccgcgcggtg
     3541 ctcgcgcggc ccgtcgagcg cgtcctcgac ctgctctagc ggcgcgcgcg cagcgtccgc
     3601 gtcacgaccg gacccggcga gccgtccgcc ccgagggcgc tgatcgtcac c
//
LOCUS       DASWTX010000318         3328 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_69984, whole genome shotgun sequence.
ACCESSION   DASWTX010000318 DASWTX010000000
VERSION     DASWTX010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3328
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69984"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1096)
                     /locus_tag="VGD38_04900"
     CDS             complement(<1..1096)
                     /locus_tag="VGD38_04900"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0727386.1"
                     /translation="MARHRLLLISVAIALVGLASLPFLMTASCLTRQQLPAEQKALDT
                     LRSMTRNDVLPSEAAVIAIENQFPRTKTAALARLIRARIKVNSKDYAGAAAVLDTTLV
                     AEHTSIADHALFMRADALEQSENAAEARALYQQIMQEYPASLRAREAALRAAELLNKT
                     GQTAAVPLLLKDLSEKNDAAALVASARAYEKTSDNTRALAAYRRLYFFAADSSESADA
                     ATAIARLGSTVSPASAEEAMARADRLYGAKRFSDALSAYVEAFAKFPATATNENQLRR
                     AIAAASARKTPDAVAAVNSIPASAGETKAQALFHLAQMYARTRQWEQARATVEELRRV
                     FPASKYTPMAFVEVGEIAREAKNAVDANYFL"
     gene            complement(1113..2621)
                     /locus_tag="VGD38_04905"
     CDS             complement(1113..2621)
                     /locus_tag="VGD38_04905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727387.1"
                     /translation="MVNGHLEDSLRREIESYLEGRLSSVKQEIATLQSLVNESLSAFL
                     ERQGDVQLDGSMVAAITEHLHAAHERGIEQAASESSRAKASSDMAIVKSAISEINDQK
                     SQAEILKALVNRASSFAPRVAFFVVKGDQATGWRGRGFEGTVGDQAIQQISLPLSADT
                     VIGSAAKALTTWSGGPGSHSEDHMLVNRLGEEPPQRIVAIPLAVRGRAVAVLYADSAG
                     LDSESINLESLETLVTVSAMAVELLSVARAAAPKRAAEEAAPAPVEAAPVEPPPQSLS
                     QPSYTPTSEYEAAPPVAEPEPAFEATPEPSFQPVPEPAFEATPEPTFEPVPEPSFSGA
                     DTIQSYDAGPAEAGSLMDGAEEATTPAAFATETSGVVVDEPQSWGSAPVEEAPAAAPR
                     RRFGQDVELPVEVRDDEERRLHNDARRFARLLISEIKLYNEQKVAEGRVEHDLYDRLR
                     EYIDRSREMYDKRVKAEVASRYDYFHGELVNTLAEGDVSKLGSNYPGATVNA"
     gene            2799..3245
                     /locus_tag="VGD38_04910"
     CDS             2799..3245
                     /locus_tag="VGD38_04910"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0727388.1"
                     /translation="MFLVGLDRSGILVAVVADPVEETTASMGATILIAEDYDDNRELL
                     RLLLSGANYVVREARNGQECLVQACVDPLPDLIMVDLSMPELDGWEVFRQLKANSNTA
                     NIPCVAVTAHTDRDRIRALQSGFSDFVGKPFRTEELLMTVARWVRK"
BASE COUNT          665 a          984 c          980 g          699 t
ORIGIN      
        1 ggaggaaata gttcgcgtca acggcgttct tcgcctctct cgcaatctcg ccaacctcga
       61 caaaagccat cggcgtgtac ttgctcgccg gaaacacgcg ccgcaactcc tcgacggttg
      121 cccgcgcctg ttcccactgc cgcgtgcgcg catacatctg cgcgagatgg aaaagcgcct
      181 gcgcttttgt ttcacccgcg gaagccggaa tgctattcac ggccgccacg gcatcgggcg
      241 tcttgcgcgc actcgcggca gcaatcgcgc gccgcagctg gttctcgttc gtcgccgtgg
      301 cgggaaactt tgcaaacgct tcgacgtaag cggagagtgc atcgctgaat cgcttcgctc
      361 catacaaacg atccgcgcgg gccatcgctt cttccgcaga agcaggcgag acagtcgaac
      421 caagccgcgc gatcgccgtc gccgcatccg cgctctcaga agaatccgcc gcaaagaaat
      481 aaagacgccg atacgcggcc agcgcacgcg tgttatccga cgtcttctcg taagctcttg
      541 cagacgccac cagcgcggca gcgtcgttct tctcactcaa atctttcaac agcagcggaa
      601 cggccgcagt ctgaccggtc ttattcaaca gctcagccgc ccgaagcgcg gcttcacgcg
      661 cacgcagcga cgccggatac tcctgcatta tctgctgata aagcgcacgc gcttccgcgg
      721 cgttttccga ttgctcgagc gcgtcggcgc gcatgaacaa cgcgtgatcc gcgatcgacg
      781 tgtgctcggc gacgagcgtg gtgtcgagca cagccgcagc gccggcgtaa tctttcgaat
      841 tgaccttgat gcgagcgcgg atcagacgcg cgagtgcggc ggttttcgtg cggggaaact
      901 gattctcgat cgcgatgaca gcggcttcag acggcaacac gtcgttgcgc gtcatactgc
      961 gcagcgtatc gagagctttc tgttcggccg gaagctgctg cctggtcagg cagctcgcgg
     1021 tcatgagaaa gggcagcgac gcaaggccga cgagtgcgat cgcgacggaa ataagaagta
     1081 agcgatgcct ggccaaaact ctaaaaaccg atctaagcgt ttactgtcgc gccgggataa
     1141 ttcgatccaa gttttgaaac gtcgccttcg gccaacgtgt tcactagttc tccgtggaag
     1201 tagtcgtagc gagacgcgac ttccgctttc acgcgcttat catacatctc gcgcgagcga
     1261 tcgatgtatt cacgcaaccg atcgtaaaga tcgtgttcga cgcgtccttc cgcaactttc
     1321 tgctcgttgt agagcttgat ctccgaaatc agcagtcgcg caaagcggcg agcgtcgttg
     1381 tgcaagcggc gctcttcgtc gtcacgaact tccaccggca gttccacgtc ctgaccgaaa
     1441 cgtctccgcg gcgccgcagc cggagcttct tcaaccggcg ccgaacccca gctctgcggt
     1501 tcgtcgacga caacaccaga cgtttctgtt gcaaacgcag ccggtgtggt tgcttcttca
     1561 gcgccgtcca tcagtgaacc agcttcagca ggaccagcgt cgtaactctg aatcgtgtcg
     1621 gcgcctgaga acgatggctc gggaacaggt tcgaatgttg gttcaggagt agcttcgaac
     1681 gccggttccg gtacaggttg gaacgacggc tcaggagtcg cttcaaaggc cggttcaggt
     1741 tcagcaaccg gcggtgccgc ttcgtattca cttgtgggcg tgtatgaagg ttgtgacaaa
     1801 gattgtggtg gcggttcgac cggcgcggcc tcgaccggcg cgggcgcggc ttcttcagca
     1861 gcgcgtttcg gcgccgcagc gcgcgcaacc gaaagcagtt cgaccgccat tgcggaaacg
     1921 gtaacgagcg tttccaacga ttcgagattg atcgactctg aatccagccc ggctgaatcg
     1981 gcgtaaagca ccgccacggc gcgaccacga acggcgagcg gaatcgcaac gatgcgttgc
     2041 ggcggctcct cgccaagccg gttaaccagc atgtgatctt ccgaatgaga acccggtcca
     2101 ccactccacg tcgtcagcgc tttcgccgcg ctgccgataa cggtgtctgc actcagcggc
     2161 agagaaattt gttgaatggc ctgatcgccc acggttcctt caaaaccacg accacgccag
     2221 ccagttgcct ggtcgccctt gacgacgaag aacgccacac gcggagcaaa ggaagaagcg
     2281 cggttcacga gtgccttgag aatctcggct tgcgacttct ggtcgttaat ctcggaaata
     2341 gccgatttca cgatagccat gtcgctggag gctttggccc gcgacgactc ggacgcggct
     2401 tgttcgatgc cgcgttcgtg tgcggcatgc aggtgctcgg ttatcgcggc aaccatgctg
     2461 ccatccaact gtacgtcgcc ttgacgctcg agaaatgccg agagggattc attgacgagg
     2521 ctttgcagcg tggcgatctc ctgtttgacg gagctcagcc ggccttcgag ataactctca
     2581 atttcacgcc gcaaactgtc ttccaaatgt ccgttgacca cagtagggtc ctccgtgtcg
     2641 tggtgttgat gtagacgaac cttcaggtct tcaggtaggg aaactaaccc aaggtctatg
     2701 cgcaaagaga gcctggcagg gggcacgggc tcggaagtga ttatggacgg gcgggattaa
     2761 gctagtcaat acttacgttt tcggcgcacg ttttggcagt gtttttggtg ggccttgatc
     2821 gctctggtat cttggttgct gttgttgcag acccagtgga ggaaaccacc gcatcgatgg
     2881 gcgctacgat tctcatcgcc gaggactatg acgacaaccg cgagttgctc cgtttactgc
     2941 tgtccggcgc aaattatgtg gttcgtgaag ctaggaatgg ccaggaatgc ctggtgcagg
     3001 cgtgtgtcga tccgctgcct gatctcatca tggtggacct ctcgatgccg gaactggacg
     3061 gctgggaggt tttcagacag ctcaaggcta attctaatac agcgaacatc ccgtgcgtcg
     3121 ccgtgacagc ccatacggac cgcgaccgca tccgggcttt gcagtcggga ttcagcgatt
     3181 ttgtcgggaa gccgttcagg accgaggagt tgctgatgac ggtggcccgg tgggtgagga
     3241 aataggacct attgcttgaa gatcgcgccg cccttcatca cgaactttac ccgtctcagc
     3301 gcgccgacat cctttgtcgg gtcgcctt
//
LOCUS       DASWTX010000319         2384 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_352210, whole genome shotgun sequence.
ACCESSION   DASWTX010000319 DASWTX010000000
VERSION     DASWTX010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2384)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2384)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2384
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_352210"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1630)
                     /locus_tag="VGD38_04915"
     CDS             complement(<1..1630)
                     /locus_tag="VGD38_04915"
                     /inference="COORDINATES: protein motif:HMM:TIGR01194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_function: GO:1904680 - peptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic peptide export ABC transporter"
                     /protein_id="HEY0727389.1"
                     /translation="MKIISFLIRCSSTIQHSKSILLVILLTGVVSGVCNAALIALINS
                     TLNRQGASARTLGLSFVAICIILPVARLASQALIIVLTAASLFELRMRMSRNILSTPL
                     RKLEKIGAHRLLAALTDDASTITAAFINLPLLCMHVAIVAATLVYMAWLSWGLLLGVF
                     GFIVVAVLGYYLMMTRGVAYFKSAREAWDGLFKHFQTLTLGTKELKLHSRRREAFLTD
                     SLRAAAMSVRRLNTSGHIFNAAAGVWGQTIAFVLIGLLLFVAPDIRAIETPVLTGYVL
                     AMLYMLTPLEYILMTLPSLNRAAIAVQKMEDLGFSLMTPADAPVSSTNETARAFSHLE
                     LAGVTHTYRREGGEDNFLLGPVDLSFRPGELVFVAGGNGTGKTTLAKILVGLYTPESG
                     EIRLNHAPITDDTREEYRQLFSAIFSDFYLFESLFGFNASGLDEKARAYLAQLQLESK
                     VQVEAGTLSTVDLSQGQRKRLALLTAYLEDRPIYLFDEWAADQDPLFKEIFYLQLLPE
                     LKSQGKLVIVITHDDRYYQVADRLIKLDYGKVVND"
     gene            complement(1627..>2384)
                     /locus_tag="VGD38_04920"
     CDS             complement(1627..>2384)
                     /locus_tag="VGD38_04920"
                     /inference="COORDINATES: protein motif:HMM:NF013166.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY0727390.1"
                     /translation="LSYVDLARCLRAAGHPVYGLQARGLDGEQAPSSNIEEMAAHYIQ
                     ELRTVQPTGPYHLGGWSLGGVIAFEMTRQLLAQGETVPMLALFDSDISEANRTVARAG
                     GVKMLMDFANELGIRPSTLGLAWNEVEHLERHKQLGFVLESARSAGLVPSYVTYKVAD
                     NLFSVFQSNLRAFANYLPRPVPCRALLFTATERVPSISERQRLSWTSLAQQGVEVCAA
                     GGNHHTMLQTPHVETLAARLNAHLAIGKEVSAS"
BASE COUNT          504 a          670 c          735 g          475 t
ORIGIN      
        1 gatcgttcac gaccttaccg taatccagct tgatcagccg gtcggccacc tggtaatagc
       61 ggtcgtcgtg agtgatcacg atcacgagtt tgccttgcga cttcaactca ggcagtaact
      121 gcaagtaaaa gatttcctta aagaggggat cctgatcggc ggcccattcg tcgaacaaat
      181 agatcggccg atcttcgagg taggccgtca gcagcgcgag ccgtttacgc tggccctgcg
      241 acaaatcgac ggtggaaagc gtgccggctt cgacttgcac tttcgattcg agttgcagtt
      301 gagcgagata ggcgcgtgct ttctcgtcga gcccgctcgc gttgaagccg aacaggcttt
      361 caaacaaata aaagtctgaa aagatcgccg aaaaaagttg ccggtattct tcgcgcgtgt
      421 cgtccgtgat gggcgcgtgg ttcaggcgaa tctcgccgct ctcaggcgtg tagagaccga
      481 cgaggatctt cgcgagcgtg gtcttgccgg tgccgttccc gccggcgacg aagaccagtt
      541 cgcccggtcg gaacgacaag tcaacaggcc cgagaaggaa gttatcttcg ccgccctcgc
      601 ggcgatacgt gtgcgtaact cccgcgagtt caaggtgtga gaacgcgcgc gcggtttcgt
      661 tcgttgacga tacgggtgcg tctgcgggcg tcatcagcga gaagccgaga tcttccatct
      721 tctgtaccgc gatcgcagcg cggttgagag aaggaagcgt catgaggatg tactccaacg
      781 gcgtcagcat gtagagcatt gcgagcacgt agccggtcag cacgggcgtc tcgatcgcgc
      841 ggatgtccgg cgctacgaac agcagcagcc cgatgaggac gaaagcgatc gtttgtcccc
      901 acacgcccgc cgcggcgttg aagatgtgtc ccgacgtgtt caggcggcgc accgacatcg
      961 ccgccgcgcg caggctgtcg gtgaggaacg cttcgcggcg acggctgtgt agtttgagtt
     1021 cctttgtgcc gagcgtcagc gtttgaaagt gcttgaagag tccgtcccat gcttcgcgcg
     1081 cactcttgaa gtaggccacg cctctcgtca tcatcaggta ataaccgagc actgcgacga
     1141 cgatgaaacc gaagacgccg agcagcagtc cccacgaaag ccacgccatg taaaccagcg
     1201 tcgcggccac gatcgcgacg tgcatgcaga gcagcggcag attgatgaat gcggcagtga
     1261 tggttgacgc gtcatctgtg agcgctgcca acaagcgatg cgctccgatc ttctccagct
     1321 tgcgcaaagg cgtggagagg atgttgcggc tcatccgcat tcgcaactcg aagagcgacg
     1381 ccgcggtcag cacgatgatc agcgcctgag aagcaagacg cgcaaccggc aggatgatgc
     1441 agatcgcgac gaagctcagg cccagtgttc gtgccgacgc accctggcga ttgagcgtcg
     1501 agttgatcag cgcgatcagc gcggcattgc agacgccgct cacgacaccg gttaacagaa
     1561 tcacgagcag gatgcttttg gagtgctgaa tcgtgctcga gcagcgaata aggaaggaga
     1621 tgattttcac gaagctgaga cctcctttcc tatagcgagg tgagcgttga gtcgtgcggc
     1681 cagtgtttcg acgtgcggcg tctgtagcat tgtgtgatgg ttgccgcccg ctgcgcaaac
     1741 ctcgacgccc tgctgcgcca gactggtcca actcaacctc tgccgctcgg agattgacgg
     1801 cacccgttcg gtggccgtaa agagcaaggc ccggcagggc acggggcgcg gaaggtagtt
     1861 cgcgaaggct ctcaagtttg actggaagac gctgaagaga ttgtccgcca ctttgtatgt
     1921 gacgtaagaa gggacgagac ccgcactccg cgcgctctcc agtacaaagc cgagttgttt
     1981 gtgacgttcc aggtgctcga cctcgttcca tgcgagaccg agcgtactgg gtcggatgcc
     2041 aagttcgttc gcgaagtcca tgagcatctt cacgccgcct gcacgggcaa ccgttctgtt
     2101 tgcctctgaa atatctgaat caaacaacgc gagcatcggg acggtctcgc cttgcgcgag
     2161 cagttgtcgt gtcatctcga aggcgatcac tccgcctaac gaccagccgc cgaggtgata
     2221 tggaccagtt ggttggaccg tgcgtagctc ttgaatgtag tgcgcggcca tttcttctat
     2281 gttcgaagaa ggcgcttgtt caccgtcgag accgcgggct tgtaaaccat agacaggatg
     2341 tccagcggcg cggaggcaac gcgccagatc gacgtaactc agca
//
LOCUS       DASWTX010000320         1911 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_308767, whole genome shotgun sequence.
ACCESSION   DASWTX010000320 DASWTX010000000
VERSION     DASWTX010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1911
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308767"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1629)
                     /locus_tag="VGD38_04925"
     CDS             complement(<1..1629)
                     /locus_tag="VGD38_04925"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEY0727391.1"
                     /translation="MASVLEIIPLGGIGEFGMNCMAVRYGDEMLILDAGMGFPEETAY
                     GVDVSIPNFNFLDEYRDAITAIVLTHGHEDHLGALPYLLKKFNVPVYCSHFTAGLAES
                     KLEEHDLLGDTLIHRVEPRDVVDIGVFSVEFIRVSHSLVDCFSLGIKTPVGTIIHTGD
                     YKVDETPVIGEPIDLRSFRRYGQDGVLALLSDSTNATVPGRTPSERAVIPAFEEIFAE
                     AKGRIIVAAFASSIHRLQIVLDVAQQFDRHVCVLGRSMQKNVEVSERLGYLDIPDGLL
                     VSLNDAKLMRNNEVVFLVTGSQGESRAALSQMATQSYKGLMVEEGDTVVLSARIIPGN
                     ERLISRMIGFIYKRGANIIEEKRRLVHVSGHASQEDIRIMTEAVRPKFVVPVHGEYRM
                     LFRHKEFVKNHLGYNEENIILIENGDVLELDGERATVVDKREIGRTFIDESGFEEIDS
                     DTVRERKQLAYEGTVTVVVAIDEASGELQDEPRILARGVRGLSNNGFPDGGVGNMLAD
                     AKRVVTASIAGASRQTLADETLLKEHVRVELKRFI"
     gene            1657..>1911
                     /locus_tag="VGD38_04930"
     CDS             1657..>1911
                     /locus_tag="VGD38_04930"
                     /inference="COORDINATES: protein motif:HMM:NF027542.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M64 N-terminal domain-containing
                     protein"
                     /protein_id="HEY0727392.1"
                     /translation="MIIRPLITLIAVLLFVGGVSAAQTMRLDYYHSGDASQEIFSVDR
                     VVIEPLAWPGHPSQALDTSNLGKYFFEVRDAKTKQVLFSRG"
BASE COUNT          404 a          597 c          506 g          404 t
ORIGIN      
        1 aatgaaccgc ttcaactcca cgcgcacgtg ctctttcagc aacgtctcgt cagccagcgt
       61 ctgtcgtgaa gcgcccgcaa tcgacgctgt aacgacgcgt ttcgcatcgg ccaacatgtt
      121 tcccacgccg ccgtccggaa atccattgtt gctcaacccg cgcacgccac gcgcgaggat
      181 ccgcggctcg tcctgcaact ctcccgacgc ttcatcgatc gccacgacaa cagtgaccgt
      241 tccttcgtaa gccaactgct tccgctcgcg caccgtgtcg ctatcgatct cttcgaaccc
      301 gctctcgtcg atgaacgtgc gtccgatctc gcgcttgtca acgaccgtcg ctcgctcgcc
      361 gtcgagctcg agcacgtcgc cgttctcgat caggatgatg ttctcttcgt tgtagccgag
      421 atggtttttg acaaactcct tgtggcggaa aagcattcga tactcgccgt gcaccggcac
      481 gacaaacttc ggccgcaccg cttcggtcat aatgcgaatg tcttcctgcg acgcgtgtcc
      541 gctcacgtgc acgagccggc gcttctcctc gataatgttt gcgccgcgtt tgtagataaa
      601 cccgatcatg cgcgagatga gccgttcgtt tccgggaatg atgcgcgccg aaagcacgac
      661 cgtgtcgccc tcttcgacca tcagtccttt ataagactgc gtcgccatct gtgagagcgc
      721 cgcacgcgat tcgccctgcg aacccgtcac gagaaacacg acctcgttat tcctcatcag
      781 cttggcgtcg ttcaacgaaa ccagcagccc gtcgggaatg tcgagataac cgagccgctc
      841 ggagacttcg acgttctttt gcatcgaccg gccgagcacg caaacgtgcc ggtcgaattg
      901 ttgcgcgacg tccagaacga tctgcaaacg atgaatcgac gaagcaaacg ccgccacgat
      961 gatacggccc ttcgcttcgg caaagatctc ttcaaaggcg ggaatcaccg cgcgttccga
     1021 cggcgtgcgg ccggggacag tcgcgttggt cgaatcagac agcagcgcca gcacgccgtc
     1081 ctggccataa cgcctgaatg atctgagatc tatcggctcg ccgatcacgg gcgtctcatc
     1141 aaccttgtaa tcccccgtgt gaatgatcgt tcccaccggc gtcttgatgc cgagcgagaa
     1201 acagtctacg agcgaatgcg acacgcgaat aaactcgaca ctgaaaacgc cgatgtccac
     1261 cacgtcgcgc ggctcgacac gatgaatcaa agtgtcgccg agcagatcgt gttcttcgag
     1321 tttgctttcc gcgaggccgg cggtgaagtg tgaacagtaa accggaacgt tgaacttctt
     1381 cagcaggtaa ggcagcgcgc cgagatgatc ttcgtgtccg tgcgtgagca cgatggcggt
     1441 gatcgcgtcg cggtactcgt cgagaaaatt gaaattcgga atcgaaacgt cgacgccgta
     1501 agcggtctcc tccggaaagc ccattccggc gtcgagaatc aacatctcgt cgccgtaacg
     1561 aaccgccatg cagttcattc cgaactcgcc gatcccgccg agcggaatga tctcaaggac
     1621 actcgccata ggtttgatag tgtatcattc gaacgtatga taatcagacc actaattaca
     1681 cttattgctg ttctattgtt tgtcggcggc gtgtcggcag cccaaaccat gcgcctcgac
     1741 tactatcata gcggcgacgc ctcacaggaa attttcagcg tggaccgggt ggtgatcgag
     1801 ccgctggcgt ggccgggtca cccgtcgcaa gcgctcgata cgtcgaacct cggtaagtac
     1861 tttttcgaag tccgcgacgc gaaaaccaaa caggttctct tctcgcgcgg g
//
LOCUS       DASWTX010000321         1785 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_241788, whole genome shotgun sequence.
ACCESSION   DASWTX010000321 DASWTX010000000
VERSION     DASWTX010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1785
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_241788"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..963)
                     /locus_tag="VGD38_04935"
     CDS             complement(<1..963)
                     /locus_tag="VGD38_04935"
                     /inference="COORDINATES: protein motif:HMM:NF014336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S1/P1 nuclease"
                     /protein_id="HEY0727393.1"
                     /translation="MYRKTARTFLSLCLAVGLVGVLPLRAAAWGRDGHQIVAQIALWR
                     LDQLNAEKALNRISRILTANLESPMPKRPNDLFAASVWPDEVRGNAKYRFADDLHFVS
                     IPLDRNNNPQALDEFKKVRDCKRRQNVPQVPEGVCIIGALEHYTKVLATSSSKKARLE
                     ALSFIVHFMGDLHQPLHTSEDKEFSNHLGGKGDRGGNYRFLFYLSDEAFQSNNIKSCV
                     QAPNSCTDKFGNERSNLKLHAAWDKYMIQTEMRTNADRGPDFKAYGESLIAQLPSDRT
                     DTRFADIEKGNFVQWARETHRLAEQNAYALIGPKDKVSPADGETY"
     gene            complement(1060..>1785)
                     /locus_tag="VGD38_04940"
     CDS             complement(1060..>1785)
                     /locus_tag="VGD38_04940"
                     /inference="COORDINATES: protein motif:HMM:NF013155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727394.1"
                     /translation="FMLASAPDSKVVALNLVQAEDTYNSMRNFTTQMKMLDFLHGLYP
                     QAHITLHAGELAPGLVPPDGLSFHIRQSVMLGHAQRIGHGVDIMHEDEPAELLREMAR
                     RDIMVEICLTSNALILGVSGKNHPLATYLEYEVPVALATDDEGVARSEITMEFMRASQ
                     DQQMSYVQLKTMARNSLQYAFIQGASLWLNAKKFIKVPQCAGDTPSKTPPSQRCQQFL
                     STSEKARLQWGLEGDLSSFESRY"
BASE COUNT          355 a          488 c          515 g          427 t
ORIGIN      
        1 gtaggtttcc ccgtcggcag ggctgacctt gtctttgggc ccaatcaacg catacgcgtt
       61 ctgttccgca agccggtgcg tttctctggc ccactgaaca aagttacctt tctcaatatc
      121 ggcaaacctc gtgtccgtcc gatcggaagg cagttgcgcg atcagggatt ctccgtacgc
      181 tttgaaatcg ggaccacgat cagcgttcgt cctcatctct gtctgaatca tgtacttgtc
      241 ccaggcggcg tgcaatttca ggttggagcg ctcgttgcca aatttgtcag tacagctatt
      301 cggagcttgc acgcaactct tgatgttatt gctttggaag gcttcgtcag acaggtagaa
      361 aaggaaccgg taattgccac cgcgatcgcc tttccctccc aggtgattgg aaaactcttt
      421 gtcttcggaa gtgtgtaacg gctggtggag atcgcccatg aagtggacga taaaactgag
      481 agcttcgaga cgggctttct tactggacga ggtcgccagc actttggtgt agtgctccaa
      541 cgcgccgatg atgcaaacgc cttccgggac ctgcgggaca ttctgtcgac gtttgcagtc
      601 ccgaaccttc ttaaactcgt ccaaagcctg gggattgttg tttctatcca acggaatgct
      661 gacgaagtgc aggtcatcgg cgaagcgata cttcgcgttg ccccgcactt cgtcgggcca
      721 aacagatgct gcgaataggt cgtttggccg ctttggcatg ggggattcca ggttggccgt
      781 gagaatcctc gaaatcctgt tcaacgcctt ctcggcgtta agttggtcta atctccagag
      841 cgcgatttgg gcgacgattt gatgaccgtc acgtccccag gccgcagcgc gcaggggtaa
      901 cacaccaacc agcccaacag ccaggcagag ggataggaac gttcgggcag tttttcggta
      961 catgggcgtt ctcctcgtca tcgagcaaga cttaccttca gctttcaaag gttatgtcat
     1021 tcgactcgga aaacgtttcc gggcgggcaa attatccggc taatagcggc tctcgaatga
     1081 gctcaaatcc ccctccaggc cccactgaag ccgcgccttc tcactcgtcg acagaaactg
     1141 ttggcaacgt tgagagggcg gggtttttga cggcgtgtcg ccggcgcatt gaggcacctt
     1201 gatgaatttc ttcgcgttca gccacagact tgcgccctgt atgaaggcgt actgaagact
     1261 gttgcgggcc atggtcttga gttgcacgta gctcatctgc tggtcctgcg acgcccgcat
     1321 aaattccatc gtgatctcgg agcgcgcgac tccttcgtcg tcggtggcga gcgcgaccgg
     1381 cacttcgtat tcgaggtacg tggcgagcgg atggttcttt ccactgacgc cgagaatcag
     1441 ggcgttactc gtgagacaga tctcgaccat gatgtcgcgg cgcgccatct ctcgcagcaa
     1501 ctccgcgggc tcgtcttcgt gcatgatgtc gacgccgtgc ccgatgcgtt gggcatgtcc
     1561 gagcattacg gactgccgga tgtgaaacga caatccgtcc ggtggaacga gacccggcgc
     1621 gagctcgccg gcgtgcaacg tgatatgtgc ttgcggatat aggccgtgaa gaaagtcgag
     1681 catcttcatc tgcgtggtga agttgcgcat tgaattgtag gtgtcttcgg cctgcacgag
     1741 gttgagcgcg acgaccttcg agtcaggcgc gctggccaac atgaa
//
LOCUS       DASWTX010000322         4908 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_308818, whole genome shotgun sequence.
ACCESSION   DASWTX010000322 DASWTX010000000
VERSION     DASWTX010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4908)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4908)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4908
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308818"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            81..1061
                     /locus_tag="VGD38_04945"
     CDS             81..1061
                     /locus_tag="VGD38_04945"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD binding domain-containing protein"
                     /protein_id="HEY0727395.1"
                     /translation="MMRLPKFEYHVPQTIAEAVRIMGEAGPAGQFVAGGTDLYPNMKR
                     RQQMPKTVISVMRLAELNQITGDGAQGLRIGASVTLTDICEHPIINRDYPVVAKAART
                     ISTPLLRNMGTIGGNLLLDTRCNYYDQNYEWRKGINFCLKKDGDVCWVAPGSTKCWAV
                     QSSDLVPVMVAIGAKIRLASTLGERVIDAAGFYNDDGIDYLHKRPDELLVDIQLPPTN
                     GWRASYQKLRRRGAFDFPVLGVAAWLSMDQGLVRDAKVVLGGIAPAPVAIAEAAGALI
                     GKPLVDDQIQAAAEAAYVKARPLDNTDFVYQWRKQMARQYTLRALRELQS"
     gene            1088..1708
                     /locus_tag="VGD38_04950"
     CDS             1088..1708
                     /locus_tag="VGD38_04950"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEY0727396.1"
                     /translation="MHHVAAVILAAGRSNRMGAFKPLLPFGKQTVIEACIDYLRKGGV
                     ESIVVVLGHRAEEVRTRIDHLGVDYALNPDPDSEMNASIAVGVGELSTSAKSLLLALA
                     DHPAVPPAVVSKLISEWQQGARLVIPTWQNRGGHPVLIDLRYRTELLNLDPARGLRAL
                     FDAHRNEVKRLPVDSPFVARDMDKWDDYRSLYQEVFGEPPPERPGE"
     gene            1785..2318
                     /locus_tag="VGD38_04955"
     CDS             1785..2318
                     /locus_tag="VGD38_04955"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY0727397.1"
                     /translation="MVLNMRKRIMAGLMAVLASCAVMAQDRAAAGPVEFSLRSIDGQT
                     VTSGSLRGEVVVLAFGASWLPLSRAQLQGVRKFADEYSDRGVVVYWVSTESDNSKSKN
                     YASDEQLRNFAQKYGLKVTVLRDPDGGVSKRFGIDQLPSIVILDKEGNISGAPIGGLD
                     PQGNLAAQLASRLDKLL"
     gene            2346..2750
                     /locus_tag="VGD38_04960"
     CDS             2346..2750
                     /locus_tag="VGD38_04960"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEY0727398.1"
                     /translation="MPFTLINPESLGAPSGYSHGLLADASGKLLFISGQIAWNEKQQI
                     VSSDFVEQFDRALANVITVVQAADGKAADIVRLIIYVTNKGEYRARTHDVGERYRKHM
                     GKHFPAMVLVEVSGLLDDQAQVEIEGMALIPA"
     gene            2747..3541
                     /locus_tag="VGD38_04965"
     CDS             2747..3541
                     /locus_tag="VGD38_04965"
                     /inference="COORDINATES: protein motif:HMM:NF006107.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase family protein"
                     /protein_id="HEY0727399.1"
                     /translation="MKQPTSFLYEQDEHGIATITLNRPDRLNALTFEVYRELTDTFAA
                     LREERDVRVVIITGAGRAFCSGGDVRDIIGELFSRDMEGLLEFTRMTCELIRNIRALP
                     KPVIASLNGTTAGAGACIALASDLRIASEDARIAFLFVKVGLAGTDMGASHLLPRIVG
                     FSKATELLYTGDFITAAEAERIGFYNRVVAGDQLQATTRDFAERLARGPAFALGKTKE
                     MLNRELHMDFESALESEAQAQAICMQHPDYREAYEAFVAKREPKFK"
     gene            3538..4692
                     /locus_tag="VGD38_04970"
     CDS             3538..4692
                     /locus_tag="VGD38_04970"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEY0727400.1"
                     /translation="MIELPFFTPEHRNLAQVTANFVSREIEPHAGVEDDVEGLARHFV
                     NLLASAGLLNYAVAVSKLDTRALCLIREALSYSSSLADLAFVMQGLGTYAIAQAAPDH
                     VREFWLARALQGKAIAAFALTEPEAGSDVASIKTTARRDGETYVIDGRKRFISNAGIA
                     DFYTVFTRTGTRDDGRPTLSAFVVGSKMQGFSVVERTELIAPHPIGEIAFQECRVPAE
                     DMVGTEGDGFRLAMETLDTFRASVGAAACGMARRALDEAVRYASTRKQFGRLLCEHQL
                     VQEKLADMATELDAARLLVYRAAYLRDTSEARVTREASEAKLFATEAAGRIIDSAVQI
                     HGGAGLVRGSVVERLYRDVRALRIYEGTSEIQKLVIAGQLLRENREGTTA"
     gene            4689..>4908
                     /locus_tag="VGD38_04975"
     CDS             4689..>4908
                     /locus_tag="VGD38_04975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727401.1"
                     /translation="MKPLSPDTTPDAQRKQIELMRQLSPAQKISLAFALTETMRDLIR
                     ADLRHRFPHADETELRRRFIARVLPREDV"
BASE COUNT          999 a         1441 c         1489 g          979 t
ORIGIN      
        1 aagcttggaa gttatggtat gtctcgagtg gtgatcgctc ccttggaaat aacgagaggc
       61 aagggggtta aagttcatcg atgatgcgtc ttcccaaatt tgaatatcac gttccgcaga
      121 ccatcgcgga ggcggtgagg attatggggg aggctgggcc tgcggggcag tttgttgccg
      181 gagggaccga cctttatccg aatatgaagc ggcggcagca gatgccgaag accgtgattt
      241 cggtgatgcg cctcgcggag ttgaatcaga ttacgggtga tggcgcgcag gggttaagga
      301 tcggtgcttc cgttacgctg acggacattt gcgaacatcc gatcatcaat cgtgattatc
      361 cggtggtcgc taaggctgcg cgaaccatct cgacgccgct gttgagaaac atgggcacga
      421 tcggcggcaa cctgctgctc gacacgcgct gcaattacta cgatcagaat tacgagtggc
      481 gtaagggcat caacttctgt ctgaagaaag atggcgacgt ttgctgggtc gcgccgggta
      541 gtacgaagtg ttgggccgtg cagtcgtcgg atctggttcc cgtcatggtg gcgatcggcg
      601 cgaaaattcg cctggcgtcg acgctcggtg aacgcgtgat cgatgcagcg gggttttata
      661 acgacgacgg tatcgattat ctgcacaaac gtcctgacga gcttttggtc gatattcaac
      721 tgccgccgac aaacggctgg cgtgcgtcgt atcaaaagct gcggcgccgc ggtgcctttg
      781 attttccggt gctcggtgtt gcggcatggt tgagcatgga ccagggattg gtgcgcgatg
      841 cgaaggtcgt gctcggaggg attgcgcccg ctcccgtggc aatcgcagaa gccgcaggcg
      901 cactgattgg aaagcccttg gtcgacgacc aaatccaggc tgcggcggag gcggcttacg
      961 tcaaggcgcg gccgcttgat aataccgact tcgtttacca gtggcgcaaa caaatggcgc
     1021 gacaatacac cttgcgcgcg cttcgcgaac tacaaagcta aagcacgttg cttacaacta
     1081 aatcactgtg catcacgtcg cagcagtaat cctcgccgcc ggccggtcaa accggatggg
     1141 cgcgttcaag ccgctgctcc cgttcgggaa acaaaccgtc atcgaggctt gtatcgacta
     1201 cctgcgcaag ggcggcgtcg aaagcattgt ggtggtgctg ggacaccgag cggaagaagt
     1261 tcgaacacgg atagatcatc tcggtgtgga ttacgctttg aacccggacc ccgacagcga
     1321 gatgaacgcc tcgattgcgg ttggtgttgg tgagctttcg actagtgcta agtctttatt
     1381 gctcgcgctc gcagatcacc ccgccgtccc gcccgcagtc gtctccaaac tcatctccga
     1441 gtggcaacaa ggcgcaagat tagtgatccc cacgtggcaa aaccgcggcg gacacccggt
     1501 gctgatcgac ctccgctacc gcacagagtt gctgaacctc gaccccgcgc gcggcctgcg
     1561 cgccctcttc gacgcccacc gaaacgaagt caaacgcctc cccgtcgact cgccgttcgt
     1621 tgcccgcgac atggataagt gggatgatta ccgctcactg tatcaggaag tcttcggcga
     1681 accaccaccc gagcggcccg gcgaatagac caactaaagc cccggcggac tcatctaaaa
     1741 caccagtccg aaaggccttg cggcgcttcg gcaaaggaga aaagatggtt ctgaatatgc
     1801 gaaagaggat catggcggga ttgatggccg tgctcgcgag ttgcgccgta atggcgcagg
     1861 atcgcgccgc cgctggtcca gtggagttct cgctgcggtc gattgacggt caaacagtca
     1921 cctccggcag cctgcgcggc gaagtcgtcg tgctcgcgtt cggtgcttcg tggctgccgt
     1981 tgtcgagagc acaactccag ggtgtgcgaa agtttgctga cgagtattcc gatcgcggcg
     2041 tggtggttta ctgggtcagt actgagtcag acaattcgaa gtcgaagaac tacgcgagcg
     2101 acgaacagct ccgcaacttc gcgcagaagt atggtttgaa agtcaccgtg ctgcgcgatc
     2161 cggatggcgg tgtgtcgaag cggtttggca tcgaccagtt gccgtcgatc gtgatcctcg
     2221 ataaggaagg aaacatttcc ggcgcgccaa tcggcggact cgatccgcag ggcaacctcg
     2281 ccgcacaact cgcgtcgcgt cttgataagt tgctctgagc ccctcacaac aattaacctc
     2341 tcctcatgcc tttcacgttg attaaccccg aatcactcgg agcgccgagc gggtactcgc
     2401 atggtctgct cgccgacgcc agcggcaagc tcttgttcat ctccggacag attgcgtgga
     2461 acgagaagca gcagatcgtg agcagcgatt ttgtcgagca gtttgatcgc gcgctggcga
     2521 atgtgattac ggtcgttcaa gccgctgacg gcaaagccgc ggatatcgtg cggctgatta
     2581 tctacgtgac gaacaaaggc gagtatcgcg cgcgcacgca cgacgtcggc gaacgctatc
     2641 gcaagcacat gggcaaacac tttcctgcga tggtactcgt cgaggtttcg ggtttgttag
     2701 acgatcaggc gcaagttgag atcgaaggga tggcgttgat acccgcatga agcagccaac
     2761 gtcgtttctc tacgaacagg acgaacacgg cattgcgacg atcacgttga accgtcctga
     2821 ccgtttgaat gcgctgacgt ttgaagtcta tcgcgagctg actgacacgt ttgctgcgtt
     2881 gcgcgaagag cgagacgttc gtgtagtgat catcaccggc gcgggccgtg cgttctgttc
     2941 cgggggcgac gtgcgcgaca tcatcgggga gctcttcagc cgcgacatgg aaggcttgct
     3001 cgagttcacg cgcatgacgt gcgagctcat tcgcaacatc cgcgcactgc cgaaacccgt
     3061 gatcgccagt ctcaacggca cgactgccgg cgcgggcgct tgcatcgcgc ttgcgtccga
     3121 tctgcgtatc gccagcgaag atgcgcgcat cgctttcctg tttgttaaag tcgggctcgc
     3181 cggcacagac atgggcgcgt cgcatctgct gccgcgcatc gtcggttttt cgaaagcgac
     3241 ggagcttctt tacactggcg acttcatcac cgccgctgaa gccgaaagaa tcggattcta
     3301 taatcgtgtc gtcgccgggg atcagctaca agcgacgacg cgcgattttg ccgaacgcct
     3361 cgcacgcggg ccggcgttcg cgctcggcaa gacgaaagag atgctcaacc gcgagctgca
     3421 catggatttc gagtcggcgc tcgagagtga agcgcaggcg caggcgatct gcatgcagca
     3481 tcccgattac cgcgaagctt acgaagcgtt tgtcgccaaa cgcgaaccga aattcaaatg
     3541 atagaacttc cgttctttac tcccgagcat cgcaatctcg cgcaagtcac ggcaaacttt
     3601 gtgtcgcgcg agattgagcc gcacgccggt gttgaagatg acgtggaagg tctcgcgcgt
     3661 cattttgtaa atctgctcgc cagcgccggt ctgttgaact acgccgtcgc ggtttcgaaa
     3721 ctcgacactc gcgcgctctg tttgattcgc gaagcgttgt cgtactcgtc ttcgctcgcg
     3781 gatctcgcgt ttgtcatgca ggggctgggc acgtacgcga tcgcgcaggc ggcgccggat
     3841 cacgtgcgtg aattctggct ggcgcgcgcg cttcagggta aagcgatcgc ggcgtttgcg
     3901 ttgactgagc cggaggccgg atcggacgtc gcttcgataa aaactacggc gcgtcgcgac
     3961 ggcgaaactt acgtcatcga cggacgcaag cgattcatct caaacgccgg catcgctgac
     4021 ttctacaccg tctttactcg caccggcacg cgcgacgacg gccgcccgac gctttctgct
     4081 ttcgtcgtcg gttcgaagat gcagggcttc agtgtggtgg agcgcaccga gttgattgcg
     4141 ccgcatccga ttggcgagat cgcttttcag gagtgtcgcg tcccggctga agacatggtc
     4201 ggcaccgaag gcgacggatt tcgtctggcg atggaaacgc tcgacacgtt tcgcgcgagt
     4261 gtcggcgcgg ctgcgtgcgg catggcgcgg cgcgcgctcg acgaagcggt ccgttatgcc
     4321 tcgacgcgca aacagttcgg ccgcctgctg tgcgagcatc aactcgtcca ggaaaaactc
     4381 gccgacatgg ctacggagct cgacgccgcg cgcctgctcg tctatcgcgc cgcctacctc
     4441 cgcgacacct ccgaagcgcg ggtgacacgc gaagcgagcg aagcaaaact cttcgccacc
     4501 gaagcggccg gccgcatcat cgacagtgcg gtccaaatcc acggcggcgc cggcctcgtg
     4561 cgcggcagcg tcgtcgagcg tctctaccgc gacgtccgcg ccctgcgcat ctacgaaggc
     4621 acctccgaaa tccaaaaact cgtcatcgcg ggccaactgc tgcgcgagaa tcgcgaaggc
     4681 accaccgcat gaagccactc tcgccggata caacccccga cgctcaacgc aagcagatcg
     4741 aactgatgcg ccagttgtcg cccgcacaaa agatctcgct cgccttcgcc ctcaccgaaa
     4801 ccatgcgcga tctaatcagg gccgacctgc gccaccgctt cccgcacgca gacgaaacgg
     4861 aactgcggcg ccgcttcatc gcccgcgtac tcccgcgcga agacgtca
//
LOCUS       DASWTX010000323         2786 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_113437, whole genome shotgun sequence.
ACCESSION   DASWTX010000323 DASWTX010000000
VERSION     DASWTX010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2786)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2786)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2786
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113437"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(226..579)
                     /locus_tag="VGD38_04980"
     CDS             complement(226..579)
                     /locus_tag="VGD38_04980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727402.1"
                     /translation="MREFEAGDDLIFQLESAFGLLRVLAVEGEGAETVWHLLAYDDFF
                     PDVESAEAALGGPAGLPVRRAHMALTNRAFERTPAARLGNRPVREDELVEYRKWLESE
                     RVVSDRSALLMLGIR"
     gene            634..1194
                     /locus_tag="VGD38_04985"
     CDS             634..1194
                     /locus_tag="VGD38_04985"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HEY0727403.1"
                     /translation="MKQFDANKDYYGVLGVDKHASQREIDRAHKRQAAKHHPDRGGSE
                     ERMKSVNEAYGVLKDATLRREYDESRTTSTPYVDNVVPDTTPSVRDVGVMGQSLSAFL
                     CLTIGLFLLFVVRFQYVDFLWPLAIIAVFVVLFGVLLARSAMVAANDSLPATNPLKRH
                     TKLQEFAFWTVIVTSGYGVIYLLVYG"
     gene            1205..1567
                     /locus_tag="VGD38_04990"
     CDS             1205..1567
                     /locus_tag="VGD38_04990"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY0727404.1"
                     /translation="MIKGLDLLFLEVNSLEESLAFYENVLGFEVESISLNSEPPMARL
                     RGGELKITLAQHLETMLRRGRGVHFFVGVEDVDRFYDELIERGADVLPPVDEGWGGRF
                     ITLEDPDKYRFFFVTWSE"
     gene            1564..1779
                     /locus_tag="VGD38_04995"
     CDS             1564..1779
                     /locus_tag="VGD38_04995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727405.1"
                     /translation="MMAGQHVENLFRRFKGEKINLKTISGGIYTGRVVEITNDYVCLN
                     ETDGVDSQTVFIFYTALESVAANVDTN"
     gene            1791..>2786
                     /locus_tag="VGD38_05000"
     CDS             1791..>2786
                     /locus_tag="VGD38_05000"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY0727406.1"
                     /translation="MQYVANPPNPWLMHSVEWIGEPPETKLEVFEETETRRIITHNDS
                     PDVGFDYTVNCYRGCIHGCTYCFSRPTHEYLGYGAGTDFDRKIIAKVNAPKLLREELM
                     KPSWKGDEIVFSFTSDPYIPLEANYKLTRQCLEVCAEFRQPVGVITKSAMIRRDIDVL
                     QELSRNAHLGVFFTIPFTDVEAARAVEPYAPLPEARFHAMEALAAAGITVGIGIAPVI
                     PGLTSDIPVLLKRAKEAGAQYAFINMLRLPGNVAPYFEERLREKLPTKADRILNRIRE
                     ARGGKLNSSVFGERMRGKGEYWAATERLFKIHCTRLGFNKKRTHETSATTTFRRPT"
BASE COUNT          642 a          769 c          790 g          585 t
ORIGIN      
        1 cggtttaagg atcaagacgt cgatgcgcgc tgtggcggaa gagatctcgg aaaggcgatc
       61 gttgagcgtg atgttgacga cgtagtggtg tggttgccac gcgtctatga gtcgttcgac
      121 ccgcacggcg tgcgcgaacg aggtaaagaa gaaaactaaa agaagcgaga gttgcgcaag
      181 tttaagcagc gaaggtttct tcatttgaag gattcaaaag ccaagttagc ggattcccaa
      241 catcaatagc gctgaacgat cggaaacaac tctttcactc tcgagccact tacgatactc
      301 gaccaattca tcttcacgaa ccggacgatt gccaagtcgc gcggcgggcg tgcgttcgaa
      361 ggcgcgattc gtcagagcca tgtgcgccct gcgcaccggc aaacccgccg gtccgccgag
      421 cgccgcttct gccgattcca cgtcgggaaa gaaatcgtcg taggccagca agtgccacac
      481 ggtttcggcg ccttcgccct caacagccaa cacacgcaac agcccgaacg cactttcgag
      541 ttgaaaaatt aaatcatcac cagcttcaaa ttcgcgcata gtttatcgac gttgccaaac
      601 gaaaacagtg ctcttagaat cagggctcgc gcaatgaaac agttcgatgc aaacaaagac
      661 tactatggcg ttttgggcgt cgacaagcac gcctcgcagc gcgagatcga tcgcgcgcac
      721 aaacgccagg ccgcgaagca tcatcccgac cgcggcggta gcgaggaacg aatgaagtcg
      781 gtaaacgagg cgtacggtgt tttgaaagac gctacattgc gccgcgaata cgatgagtcg
      841 cgaacaacaa gcaccccgta cgttgataac gttgttcccg acacgacacc gtctgtgcgc
      901 gacgtcggcg tcatgggcca aagcctgagc gccttcctgt gtttgacgat cggattgttt
      961 ttgctgttcg tagtgcgctt tcagtatgtc gactttttgt ggccgctcgc gatcatcgcg
     1021 gtgttcgtgg tcctgtttgg tgtgctgctt gcccgcagtg cgatggtggc ggcgaacgat
     1081 tccttgccgg ccacaaatcc tctgaagcgg cacacgaagc ttcaggagtt cgcattctgg
     1141 accgtgatcg ttaccagcgg ctacggggtt atttatttgc tggtgtacgg ctgaagggcg
     1201 ttgaatgatc aagggtctgg acctgctctt tctcgaagtg aatagtctcg aagagtcgct
     1261 cgcgttctac gaaaacgtgc tcgggttcga ggttgaatcg atcagtctca actcggaacc
     1321 gccgatggcc cggctgcggg gcggcgaatt gaaaatcacg ttggcccaac acctggagac
     1381 gatgctgcgc cgcgggcggg gtgttcactt ctttgtcggc gtggaagacg tcgatcggtt
     1441 ttacgacgaa ctgatcgaaa gaggcgctga cgtgctgcct ccggtcgacg aaggttgggg
     1501 cgggcgtttc ataaccctgg aagatccgga taagtatcgc tttttctttg taacctggag
     1561 tgaatgatgg caggacaaca cgtcgaaaat ctctttcgcc gcttcaaagg cgagaagatc
     1621 aacctcaaaa cgatctccgg cggcatttac acgggccgcg ttgtcgagat cacgaacgac
     1681 tacgtttgcc tgaatgaaac cgatggcgtc gacagccaaa ctgtcttcat cttttatacg
     1741 gcgctcgagt cggtagctgc gaacgtggac accaactaag ttttagaagt atgcagtacg
     1801 ttgctaaccc gcccaatcca tggttaatgc attccgtcga atggattggc gaaccacccg
     1861 aaacgaagct cgaagtcttt gaagagactg aaactcgccg catcatcacg cacaacgaca
     1921 gcccggacgt cggtttcgac tacaccgtca actgctatcg cggctgcatc cacggttgca
     1981 cttactgctt cagccgtccc acgcacgagt atctcggcta cggcgccggc acggacttcg
     2041 accggaagat catcgcgaaa gtgaacgcgc cgaaactgtt gcgcgaagag ttgatgaagc
     2101 cttcgtggaa aggcgacgag atcgtctttt cgtttacgtc agatccatac attccgttgg
     2161 aagcgaatta caaactcacg cggcagtgtc tcgaagtgtg cgctgagttt cggcaaccgg
     2221 tcggcgtcat cacgaagtcg gcaatgatcc gccgcgacat cgacgtgttg caggagttgt
     2281 cgcgcaacgc gcatctcggc gtgttcttca cgattccgtt cacggacgtg gaagccgcac
     2341 gagctgtcga gccatacgcg ccgttgccgg aagcgcgctt tcatgcgatg gaagcactcg
     2401 cagccgcggg cattacggtc ggcatcggca tcgcgcccgt cattcccgga ctgacaagcg
     2461 acataccggt tttgttgaaa cgcgccaagg aagcgggcgc gcaatatgct ttcatcaaca
     2521 tgttgcggct gccgggcaac gtcgcgcctt actttgaaga acgcctgcgc gagaagttgc
     2581 cgaccaaagc cgatcgcatt ctgaatcgca tccgcgaagc acgcggcggc aagctgaatt
     2641 cgagcgtctt tggcgaacga atgcgcggta aaggcgagta ctgggccgcc accgaacggc
     2701 tcttcaaaat ccactgcacg cggctgggct ttaacaagaa acgcactcac gaaacgtcag
     2761 ccacgaccac gttccgccgt ccgacc
//
LOCUS       DASWTX010000324         3226 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_26947, whole genome shotgun sequence.
ACCESSION   DASWTX010000324 DASWTX010000000
VERSION     DASWTX010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3226
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26947"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..598)
                     /locus_tag="VGD38_05005"
     CDS             complement(<1..598)
                     /locus_tag="VGD38_05005"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HEY0727407.1"
                     /translation="MNPLISVIIPAYNCERFLREAVQSVLDQKYSDLEIIIVDDGSTD
                     GTASVAKSFPEPVRYLHQTNQGPSAARNRGIERAQGSLIAFADADDLWPADKFEQQLP
                     YLIQDPTTDIVLGRIQLAKWSETDNGQTRVEEFAEPVFSVNLGSAIIRKSVFERVGLF
                     DETMRYSEDVDWMMRAREGGAKIVTIDAVTLFYCRHDQN"
     gene            complement(595..1674)
                     /locus_tag="VGD38_05010"
     CDS             complement(595..1674)
                     /locus_tag="VGD38_05010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727408.1"
                     /translation="MPPAHVVPSEITGEDQASKSVEYFQSVYGLFESAQQITGTVERS
                     YVIGGYRIRLSFAGPALLSLTRALEHLATDNHSNADLTICLWDSESTGQRMIARPWQQ
                     EDFLARGVIQGYNTERIYTAFQHGSGAISVLDTERNTAVFWAPDAKLPYWEYGSPLRS
                     ILHWWLLNRGLQLVHAAAVGNSSGGVLIGGKGGSGKSTTALVCLESNLSYIGDDYTLL
                     GLESGPVVHSLYNSAKLNSDHVQRFPSLLPKVANPDRLAAEKALLFVHEHYPAKVAAQ
                     LPVRAVLLPRVTGLPDTTWKRVSVAATLAALAPSTIFQLPRAGHEAFQFLAAFIRQLP
                     CFSLEVGTNLSAIPPVIEKLLGEVS"
     gene            complement(1708..2163)
                     /locus_tag="VGD38_05015"
     CDS             complement(1708..2163)
                     /locus_tag="VGD38_05015"
                     /inference="COORDINATES: protein motif:HMM:NF017239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PqqD family protein"
                     /protein_id="HEY0727409.1"
                     /translation="MNNQRFRVNTPTVTHETIDGEAVIINLDTGNYYSLVEAGSFIWS
                     LLDKGASAGEVQNVVLQTYHADAHDVDRGVHELLAQLQQENLIVPANGAAEAVDLAQV
                     AAATNGHTKPSFNPPSLNKYSDMQELLLLDPIHDVDDAGWPKPVPDLPK"
     gene            complement(2296..>3226)
                     /locus_tag="VGD38_05020"
     CDS             complement(2296..>3226)
                     /locus_tag="VGD38_05020"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0727410.1"
                     /translation="LHQPGELTVRVHFRPGLDRWKELADKGIRVGAGDEWIRLGALKG
                     HIDGIMGTSSARFFEPYSHDAKNRGRWRPLMVNDKGEFVEGKFLGYMLSADRAGLQLT
                     VHAIGDEANNVLLNYLDELNKQNGKRDRRFRLVHAQVLAPQDFKRLGQFGVVAEVQPF
                     HLSDDMRWMEERIGAERTQGAYAFKSIQASGAILSFGTDWPGTSASEYPINPMLGLYA
                     AVTRQTITGQPAAGWFPNERITIEDAIKAYTYGTAYANFEEKLKGSIEVGKLADLTVL
                     SNNLLKVEPKEFLTTQVLYTIVDGRIVFEPSGI"
BASE COUNT          662 a          927 c          929 g          708 t
ORIGIN      
        1 tgttctggtc gtgcctgcaa tagaacagcg tgaccgcatc gatggtcacg attttggcgc
       61 cgccttccct cgcgcgcatc atccaatcga cgtcctcgct gtagcgcatc gtctcatcaa
      121 acagcccgac gcgttcgaag acagactttc tgatgatcgc gcttcctaaa ttcaccgaaa
      181 acaccggttc cgcgaactcc tccactcgcg tctggccgtt gtccgtttcc gaccacttgg
      241 ccaactggat tcgtcccagc acgatgtccg tcgtggggtc ttgaatcaga tacggaagtt
      301 gctgctcgaa tttatccgcc ggccaaagat cgtccgcgtc cgcaaaagca atcagacttc
      361 cctgtgcgcg ttcgatgccg cggttgcgcg cggccgaggg cccctgattc gtctggtgca
      421 gataacgaac tggttccggg aaactcttcg ccacgcttgc ggtgccgtcg gtcgagccgt
      481 cgtcgacgat aatgatctcg aggtctgaat acttctggtc caagacactc tgaacggctt
      541 cgcgcaaaaa tcgctcgcag ttgtaggcgg gaataattac gctgattagc gggttcaact
      601 tacttctccc aacaattttt cgattaccgg cggaatggct gaaaggtttg tgcccacttc
      661 aagactgaag caaggaagct gacgaataaa agcagcgaga aactgaaacg cctcgtgtcc
      721 cgcgcgtggc aactggaaaa tcgtactcgg cgccagcgcc gctaaagtcg cggccacgga
      781 aactcgtttc catgtggtgt cgggaagacc tgttacacgc ggcagcagca cggctcggac
      841 cggcaattgg gcagcgactt tcgcgggata gtgttcgtga acaaacagca acgctttctc
      901 agccgccaat cgatccgggt tcgccacttt cggcaacaga ctcggaaagc gctgtacgtg
      961 atcgctgttt agttttgcgg agttgtaaag actatggacc accggcccgg attccaaccc
     1021 gagcaacgtg taatcatcgc cgatgtagga gaggttggac tcaagacaga ccagtgcggt
     1081 ggtggacttg ccgcttccgc cttttccgcc aatcaagact ccgccgctcg agttgccgac
     1141 ggccgccgca tggaccaact gcaaccctcg attcaaaagc caccagtgca gaatgcttct
     1201 taacggcgag ccgtattccc agtaaggaag cttcgcgtcc ggcgcccaga agaccgccgt
     1261 gttgcgttcc gtatccagaa cgctgatcgc gccagagccg tgttgaaacg cggtgtaaat
     1321 gcgttccgtg ttgtaaccct ggatcacgcc gcgcgcgaga aagtcctctt gttgccacgg
     1381 ccgcgcgatc atgcgttggc ccgtcgactc ggaatcccaa agacagatcg tcaggtccgc
     1441 gttcgagtga ttgtctgtgg ccagatgttc gagcgccctg gtcaacgaca gcaaagccgg
     1501 acccgcaaaa ctcagccgaa tccggtagcc gccgataacg tagctgcgct cgaccgtacc
     1561 cgttatctgc tgggccgact caaagaggcc gtagacagac tgaaagtatt cgaccgattt
     1621 cgacgcctgg tcttcgcctg tgatttctga tggaaccacg tgagctgggg gcattggttg
     1681 attgcggcga gttcgtccct ggcagcctca ctttggaagg tccggaaccg gtttgggcca
     1741 acccgcgtca tccacatcgt gaatcggatc gagcaacaac agctcctgca tgtccgaata
     1801 cttgttgagc gaaggtggat tgaacgacgg cttcgtgtga ccattggtgg cagccgctac
     1861 ctgggccaga tcgacagctt ccgcggctcc gttagcggga acgataaggt tctcctgctg
     1921 caactgggcc aacaactcgt gcacgcctcg atcgacgtcg tgggcgtcgg cgtggtaggt
     1981 ctggaggacc acattctgga cctcgcccgc ggacgcgccc ttgtcgagga ggctccagat
     2041 aaaggagccg gcctccacga ggctgtaata gtttccggtg tcgagattga tgataacggc
     2101 ctcaccatca atagtttcgt gggtgaccgt aggggtatta actctgaatc gctgattatt
     2161 catggctgac aatcctgggg cacttgttac ggattaaaag gagcaatacg caggctactt
     2221 cagaaattgt gagctagata cgtccagcaa agggcgaaac actgttggcc acgcggcgct
     2281 cactgacagg ccagattata tgccagacgg ctcgaaaacg atcctgccgt ccacgattgt
     2341 atagaggact tgtgtggtta gaaattcctt cggttcgacc ttcagcaggt tattcgaaag
     2401 cacggtcagg tcggcgagtt ttccgacctc gattgagcct ttgagcttct cttcaaagtt
     2461 cgcgtaggcg gtgccgtagg tgtaggcctt gatggcgtct tcgatggtga tgcgttcgtt
     2521 ggggaaccaa cccgctgccg gttggccggt gatcgtttgg cgtgtgacgg cggcgtagag
     2581 gccgagcatc gggttgattg gatactccga cgctgatgtg ccgggccagt cggtgccgaa
     2641 gcttaatatc gcgccgctcg cttgaatgct tttgaaagcg taggcgcctt gggtacgctc
     2701 ggcgccgatg cgctcttcca tccagcgcat gtcgtcgctc aagtgaaatg gctgcacttc
     2761 cgcaaccaca ccgaattggc ccaggcgttt gaaatcctgc ggcgcgagca cctgcgcatg
     2821 gaccagacga aagcgccggt cgcgtttgcc gttctgtttg ttcagctcgt cgagataatt
     2881 gagcagaacg ttgttcgctt catcgccgat cgcgtgcacg gtcaactgca gcccggcgcg
     2941 atcggcgctc agcatgtaac cgagaaactt cccttcaaca aattcgcctt tgtcgttgac
     3001 catcaacggg cgccaacggc cgcggttctt cgcatcgtgt gagtagggct cgaagaagcg
     3061 cgcgctgctc gtgcccatga tgccgtcgat gtggcccttg agcgcgccga gacgaatcca
     3121 ctcgtcgccg gcgccgacgc gaattccctt gtccgccaat tccttccaac gatcgagacc
     3181 gggacggaaa tggacgcgca ccgtgagctc gcctggttgg tgtagc
//
LOCUS       DASWTX010000325         2185 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_395494, whole genome shotgun sequence.
ACCESSION   DASWTX010000325 DASWTX010000000
VERSION     DASWTX010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2185
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_395494"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..338
                     /locus_tag="VGD38_05025"
     CDS             <1..338
                     /locus_tag="VGD38_05025"
                     /inference="COORDINATES: protein motif:HMM:NF012626.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727411.1"
                     /translation="AIVSAGKLPSEMLADLHREFGEFHFGRRDLHMPVTRGQELVAQL
                     SQNPPENFASFQVTNVATTDGAKLTFDDESWLLFRQSGTEPVLRLYSEATSIDKMNTL
                     LNAAQELVK"
     gene            340..1167
                     /gene="mutM"
                     /locus_tag="VGD38_05030"
     CDS             340..1167
                     /gene="mutM"
                     /locus_tag="VGD38_05030"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: protein motif:HMM:NF002211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0008534 - oxidized purine nucleobase
                     lesion DNA N-glycosylase activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HEY0727412.1"
                     /translation="MPELPEVEHVVRALRPVVTGRRILAAELNLKRTVPELSRAAFAR
                     QLRDAVITGVGRRGKYILFELEQGRLLTTHLRMTGKFVSLTTDESLPPYAHVVFYLDD
                     ERRLVFCDMRQFGRMRLIKSVQQLPKELSTLAPEPLSEEFTEEYFIETLSRSKRSLKQ
                     LLLDQTRVLGLGNIYAVEALFLAGVHPLKPANKLSKPRARKLYQAIRQILHEAIEAGS
                     TLQIDIADGNGSYFGTTERFWRVYEREGEPCVNCGTLIKRIVHGGRSTYYCPRCQKR"
     gene            complement(1264..>2185)
                     /locus_tag="VGD38_05035"
     CDS             complement(1264..>2185)
                     /locus_tag="VGD38_05035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727413.1"
                     /translation="PITPEPDPQLPLLTKEVVVDPQTDVQREVQANLKAEIARVINGI
                     HEPALHDISQTILGEMLRFFDWLDRIENNLHKLDTLLESLSLMEVLEFEARSLVDFIE
                     ERAKKVAAGNDRLHEVLDGITYGITHDLRRIFERELVRGVTEHSTPIVYGKILHAHGL
                     LTNCFQQSTITLLQVFNPSLNAASLFNDVESRLKQSLVLCKDLSSLMRFVRLSQANSD
                     PDVLRTVVDRILEFRDGSMHYLMYKDWRGYESLALEVITAIENNLDPKPLLHRFLTFL
                     ELLYGHVKMRAVLAENFPYSGGQDSVEEQA"
BASE COUNT          466 a          600 c          649 g          470 t
ORIGIN      
        1 aagcgatcgt cagcgccggt aaactgccgt ccgagatgct cgcggatctg catcgtgagt
       61 ttggcgagtt tcacttcggc cgccgcgacc tgcacatgcc ggtcacacgc gggcaggaac
      121 tcgtcgcgca actgtcacag aatccaccgg agaacttcgc gtcgtttcag gttacgaacg
      181 ttgcgaccac cgatggtgcg aagttaactt tcgacgacga gtcgtggttg ttgtttcgac
      241 aatccggcac cgaacctgtg ctccgtctct attcggaagc aacctcgatc gacaagatga
      301 acacgctcct caacgccgcg caggagctgg tgaagtgaca tgcctgaact tcccgaagtc
      361 gaacacgttg ttcgggcgct gcggccggtc gttaccggac ggcgcatcct cgcagccgag
      421 cttaacctca aacgcacggt ccccgagctt tcgcgtgctg cgttcgcacg tcaactgcgc
      481 gacgcagtga tcacgggcgt cgggcgccgc ggcaagtaca tcctcttcga actcgaacag
      541 ggacgcctgc tcaccactca cctgcgcatg accggaaagt tcgtctccct cacaaccgac
      601 gaatcactgc cgccgtacgc gcacgtcgtt ttctatctcg acgacgagcg gcgcctggtc
      661 ttttgcgaca tgcgtcagtt tggccgcatg cgcctgatca agagcgtgca gcagttgccg
      721 aaagagctct caacactcgc gcccgaaccg ttgtccgaag agtttactga agagtacttc
      781 atcgaaacgc tttcgcgatc gaagcggagt ttgaaacagt tgttgttgga ccagacgcgc
      841 gtgctcggtc tgggcaacat ctacgcggtc gaagccctat ttctcgcggg cgtccatccg
      901 ctgaaaccgg caaacaaatt gtcgaagccg cgtgcgcgca agctgtacca ggccattcgc
      961 caaatcctgc acgaagcgat cgaagccggg tcaacgttgc agatcgatat cgccgatgga
     1021 aacggcagtt acttcggcac gactgaaagg ttctggcgcg tgtatgagcg tgaaggcgag
     1081 ccgtgtgtga attgcggaac gctgataaag cggatcgttc atggtgggcg ttcgacttat
     1141 tattgtcccc ggtgtcagaa gcggtagcgg aatatcgcga gtaacaaata atgctagcgc
     1201 cacagtaaca gtttgtggca gtttgggcgc ttctcgcgcc actgaggcga aacgccagac
     1261 cgtttaggcc tgttcttcca ctgaatcctg acctcccgaa tacggaaagt tctccgccag
     1321 cacagcgcgc atcttcacgt ggccatacag cagctcgagg aacgtcagaa agcggtgcaa
     1381 aagcggcttc ggatcgaggt tgttctctat cgcggtgatg acttcgaggg ccaggctctc
     1441 gtaaccgcgc cagtctttgt acatcaggta atgcatgctg ccgtctctga attcgaggat
     1501 gcgatcgacc acggtgcgca acacgtcggg gtcggaattg gcttgagaaa gccgcacaaa
     1561 acgcattagc gacgagaggt ctttgcacag gaccagcgac tgcttgaggc gcgattcgac
     1621 gtcgttgaag agcgaagcgg cgttgaggga tgggttgaaa acctggagca gcgtgatggt
     1681 tgattgctgg aagcagttcg tcaaaagacc atgagcgtga aggatcttac cgtaaacgat
     1741 tggcgtcgag tgttcggtga cgccgcgaac cagttctcgt tcaaaaatac gccgtaaatc
     1801 gtgggttatt ccgtaggtga tgccgtcgag gacttcgtgc aggcggtcgt tgccggcggc
     1861 cactttcttg gctctctcct caataaaatc gacgagcgaa cgggcttcga attcgagcac
     1921 ttccatgagc gaaaggcttt cgagaagggt gtcgagtttg tggaggttgt tctcgatccg
     1981 atcgagccag tcgaagaaac ggagcatctc gccgaggatg gtttgtgaga tgtcgtggag
     2041 tgcgggctcg tgtatgccgt tgataacgcg agcgatctcg gccttgaggt tcgcctgcac
     2101 ctcccgctga acgtccgtct gcggatcgac aacgacttcc tttgtcagca gcggtaactg
     2161 tggatcgggt tcaggcgtga tcggc
//
LOCUS       DASWTX010000326         7781 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_263891, whole genome shotgun sequence.
ACCESSION   DASWTX010000326 DASWTX010000000
VERSION     DASWTX010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7781
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263891"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..388
                     /locus_tag="VGD38_05040"
     CDS             <1..388
                     /locus_tag="VGD38_05040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727414.1"
                     /translation="PIREDDYESCAELCRSVHGFDRINELKHSPPMPHPFVALRDGRI
                     TAYISTPQFWAINHAVAETDRDMQALLLGAGNQCEQLSFLFPTRQTELFRWLLKQGMK
                     VIKPMTLMSMGEYHEPRGCYLPSVGY"
     gene            complement(697..1098)
                     /locus_tag="VGD38_05045"
     CDS             complement(697..1098)
                     /locus_tag="VGD38_05045"
                     /inference="COORDINATES: protein motif:HMM:NF016408.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HEY0727415.1"
                     /translation="MTTQAVASRDERGQPTLVNGHRTNVNKDNWLGFVGDVVNFTGEV
                     CFKSMLRIDGHFSGNVISTDGTLIVSTGAEVTKAVIKVAVAKINGTVEGDILASKQLV
                     LGRTANVRGHLAAPALVVEEGAQLNGSCRRI"
     gene            1292..1777
                     /locus_tag="VGD38_05050"
     CDS             1292..1777
                     /locus_tag="VGD38_05050"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY0727416.1"
                     /translation="MTAQMIRTGLQPGDIGYIIYLHGVLYAQEYELDRTFEGDVAIRM
                     GEFAKTYDASKDYFAVAELKGKIVGTITINGLSDETAQIRGFLVHPDARGRGLGRQLI
                     DNAIAFCRERGFKKITLWTISELKAAAHLYRQAGFKITREETHEIWGATRTEQEYELI
                     L"
     gene            1792..2778
                     /locus_tag="VGD38_05055"
     CDS             1792..2778
                     /locus_tag="VGD38_05055"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0727417.1"
                     /translation="MAKFDLHTHFYTEEFFQTIRDLPSEFSFGTSPSGQTIITYRGAR
                     FFGVTPAMTDVAKRLEDMDRAGIDVEVVSLSTPNVFFTSAQHQPQVARMVNDSYAELI
                     AKHRGRFKGFASIPMDAPDAALAELHRAINELKLNGVILLSNIGGKPLTSPEYRPFFA
                     EANRMKLCIFLHPMIPANSDAFREYVLGPIIGFPFDTSLAVARMCYDGMFADFPDIRW
                     IIGHLGGAVPYLMERMDNGYRDFPECRAKIDQLPSFYLKRLYYDTVSFSPHTLMMVRN
                     MVGADHMVMGSDYPHLLGSIDRAVSSIEGLEIPAAEKEGIFSTTALKILNNI"
     gene            2895..3401
                     /locus_tag="VGD38_05060"
     CDS             2895..3401
                     /locus_tag="VGD38_05060"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0727418.1"
                     /translation="MLFQDFYPSLCRFLECLLGGRAPLAQDLAQESFLQLHRTAWGTL
                     PPGEARFWLYRVARNMAINEFRKSHTRYRLFDRVVEAMRPAARNPEQEYETRERKELV
                     LEMLQTLPEDQRTALLLREQEQLSYREIGQVLNVSESKVKVDIFRARAALRERWSKKV
                     RVASASVS"
     gene            3416..4330
                     /locus_tag="VGD38_05065"
     CDS             3416..4330
                     /locus_tag="VGD38_05065"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HEY0727419.1"
                     /translation="MNCGFTEKISSLIDGELSTAEAREVERHLLICAQCEEARADFLN
                     LRSQISGFEASLPGEVQNRALAKILSKPAASGARHQWSWNWGYGAVALASIAIVALIV
                     GWNIVGSKVDEQPVPVAYQSPISASSPEAKPSPTAEPQKPESPQQQQPTPKPRRTAPV
                     REPKPGEQFATVPRNVQPVVPETTRPADTQTMTALHFERAETLLRAFRNVRLDEPSAA
                     AEVRYERTRAKQLIYQNMMLRREADASGDVQIASLLDSLEPILLDIANLPDKPDNDTV
                     RVIRERVERKNIVALLQVNSTALARALD"
     gene            4496..5971
                     /locus_tag="VGD38_05070"
     CDS             4496..5971
                     /locus_tag="VGD38_05070"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HEY0727420.1"
                     /translation="MKSLLTIRPQLKLVFALLLFASVTYAQDIAKLEKFMQSTKVNTA
                     SMQIFREGRDLIEAQNWQRAAEKFNEFIKGYPKDKDLDAALYWHGYALQKQGRTDEAA
                     ASLVRLINRYPNSNWRNDAQALLVTLGRKADVDQALARDNCEIKILALQSLFQADEER
                     AISIVTESLKANPNPCQGFQAAAVSMLGAHGGARAVPILLDIARTNTDVKLRLTAIKR
                     LGDQHNEQVTDELIKLYDADRTKEVRVQILRALVESRSPRGSAKVLDIARSGDDVQLR
                     LAAIRYVGELKDAASLDELIRIYDADKTKEIRAMVLRSLAERDDARARAKIWEIARQG
                     ETPEVRIEAIRRLSDRKEVQLDELLQLYTGESDLRIKQSLLRAFADINDPRAQAKLLD
                     IARTGESIELRGFAIRQLGDKDDEQTVTQLISLYDSEQNVQVKAVLMRSFGDSKHKVA
                     VRKLMTIARNDPSVELRKVAVRYLGDSKDPEALKFLEDLLK"
     gene            5986..7551
                     /locus_tag="VGD38_05075"
     CDS             5986..7551
                     /locus_tag="VGD38_05075"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HEY0727421.1"
                     /translation="MKLPVVLSLVLAVAACGGTELKAHSGDELKTQSTATTVQGFTTV
                     EGADLMTKLDNAHAQGRMRQTPYWSAYTFDVRPGVAIDPAIREFRGNMTTMGDTTVFV
                     GTDASGMTVETRSLAIFLLRDPSANQITRMEIYNLERKREYSGYPVYWLGRANNEESL
                     NYLRAIAAATPLDTLSERAVLGIAVHDDARVSGMLKNFITSSQNQRIRSTSVYWLGQT
                     GGELQFLASLVRSDAEDKKLRRAAAHAIGESHDRGTMAAIQSLYQDLKDPEIRRSVIS
                     AAGHSDEEQPAFAFLLGVAKSDSDWESRRTAARQLGRFQRDDAADELMKIYASDANIE
                     VKKAALRSLGETKNPKAQTRLLEIARTDTNPDLRKQAVRVLGERGEAAVDDLLKLFDT
                     EQVPEVRRAALQSLSEIKSTRVEDKLFEVARGNEPTDIKKYAIRMLGERVSKRSFEFL
                     SQTAQSNDANAEVQVQAVRAISERRSEESVPLLIKIARSHPNQMVRKQAIRSLGESGD
                     PRAVEFFREVLAK"
BASE COUNT         1765 a         2214 c         2250 g         1552 t
ORIGIN      
        1 accgatcagg gaagacgatt acgaaagctg cgccgagttg tgtcgctcgg tgcacggctt
       61 cgaccgcatt aatgaactca agcacagtcc accgatgccg catcccttcg tcgccctgcg
      121 cgacggccgc atcacagcct acatctcgac gccgcagttc tgggccatta accacgccgt
      181 cgccgaaacc gatcgcgaca tgcaagcgct cctgctcggc gccggcaatc agtgcgaaca
      241 gctctccttc ctattcccga cccgccaaac agaactcttc cgttggttac tgaaacaggg
      301 aatgaaggtc atcaaaccca tgacgctgat gtcgatgggc gaataccacg aaccgcgcgg
      361 ctgttattta ccgtctgttg ggtattgacg tagtcagtta cgcgtgagta gtaaggtcgg
      421 ttacgcgtga gtagtagtaa gggttgatga agattaacgc cgaaggcgtt cgcgagttcg
      481 agcccagggt tgcttcaacc ctgggtaaac gtaaaaagac gaaccaacgc tgaaagcgtt
      541 ggcgaactgg cgctgtcctc gccaacgctt tcagcgttgc aatgcttctt gtttgttgga
      601 cccagggttc ggaaaccctg ggctgtacct cgcgaacgcc ttcggcgtta tgcggtttag
      661 atcggcgtta cacggtttag atcggcgtta catggtttag atccgccggc agctgccgtt
      721 gagttgggcg ccctcttcga ctacgagggc cggggcggcg agatggccgc gcacgtttgc
      781 ggtgcggccg aggaccagtt gtttgctcgc gaggatgtcg ccttcgactg tgccgttgat
      841 ttttgcgacc gcgactttga tgacggcttt tgtcacttcc gcacctgtgc tgacgatgag
      901 tgtgccatcg gttgagataa cgttgccgga aaagtgaccg tcgatccgca gcatcgattt
      961 aaagcagact tcgccggtga agttcaccac gtcacccacg aaaccaagcc aattgtcttt
     1021 gttgacgttc gtccggtggc cattaacgag cgtaggctgg ccgcgttcgt ctctgctcgc
     1081 aactgcttga gtagtcactg ctgctgcccc tctttctgtt cttttcctgt gacccgttaa
     1141 ttacgattag gtgggatcgg tgccgccggg gagccgccgc cgctgctatt gaaccgggag
     1201 aaaagacgaa atatcttgct gttcgacact ataacatccg cgcttgcgtc aagaatgtta
     1261 cgattagatt gccgttcgaa ggcaaataac aatgactgca caaatgattc gcaccggtct
     1321 tcagcccggc gacatcgggt acatcatcta tttacacggc gtgctctacg cgcaggagta
     1381 cgaactcgat cgcacgttcg aaggcgacgt cgcgatccgc atgggcgaat tcgcgaagac
     1441 ttacgacgca agcaaagatt acttcgccgt tgccgaactc aagggaaaga tcgtcggcac
     1501 catcacaatc aacggactgt ctgacgaaac cgcacagatc agggggtttc tggttcaccc
     1561 ggacgcgcgc ggccgcggtc tcggtcgtca actcatcgac aacgccatcg ccttctgccg
     1621 cgaacgcggc ttcaagaaaa taaccctctg gacgatcagc gagttgaagg ccgccgcaca
     1681 tctttacaga caagcaggct tcaaaatcac gcgcgaagag acacacgaga tctggggcgc
     1741 aacgcgcacc gaacaggaat acgaactgat cctttgaggc gtcaaaaatc cgtggctaaa
     1801 ttcgatcttc acacacactt ctacacggaa gagttttttc agaccatccg cgatctgccg
     1861 tcggagtttt ctttcggcac gagcccgagt ggacaaacga tcatcaccta ccgcggtgcg
     1921 cgcttcttcg gcgttacgcc cgcgatgacc gacgtcgcca aacgcctcga agacatggac
     1981 cgcgccggga tcgacgtcga ggtcgtctca ctctcaacgc caaacgtctt cttcaccagc
     2041 gcgcaacacc agccgcaagt cgcgcgcatg gtcaacgatt cttacgccga actaatcgcg
     2101 aaacaccgag ggcgtttcaa aggcttcgcc agcattccga tggacgcgcc cgacgccgcg
     2161 ctcgccgagc ttcatcgcgc gataaacgaa ctcaagctca acggcgtcat tctcctgagc
     2221 aacatcggcg gcaagccgct cacgtcaccc gagtatcgcc cgttctttgc agaagcgaac
     2281 cggatgaaat tgtgcatctt cctgcatccg atgatcccgg caaactcgga cgcgtttcgc
     2341 gagtacgtgc ttggaccaat catcggcttt cctttcgaca cgagcctcgc ggtcgcgcgc
     2401 atgtgttacg acggaatgtt cgccgacttc cccgacatcc gctggatcat cggtcatctc
     2461 ggcggcgctg ttccgtattt gatggagcgc atggacaacg ggtatcgcga cttccccgag
     2521 tgtcgcgcga agatcgatca actgccgagt ttctacttga aacggctcta ttacgacacg
     2581 gtttcgttca gcccgcacac gttgatgatg gtgcgaaaca tggtcggcgc ggatcacatg
     2641 gtgatgggca gcgactaccc gcacctgctc ggatcgattg accgggcggt gtcgtcgatc
     2701 gaagggctcg agatccccgc ggccgagaag gaagggattt tttcgacgac cgcgctcaag
     2761 atcctcaaca acatttgagt cctgccaaat aaccccgcaa aatctttcca gaaaaaaatc
     2821 tgtaactttc cccgaacccg cgtgttgtag gagacgtagc gcagcttatg gcgagccaag
     2881 atgacgagtt caccatgctg tttcaggatt tttaccctag cctatgccgc tttctggagt
     2941 gtttattggg aggccgcgcg ccactggcgc aagacttggc acaggagagc ttcctgcaac
     3001 ttcatcgcac ggcatggggc accttgcccc cgggcgaagc tcgcttctgg ctctaccgtg
     3061 tggcgcgaaa catggccatc aacgagtttc gcaagtcgca cacgcgttac cggttgtttg
     3121 atcgagtggt ggaagcaatg agaccagcgg cacgcaatcc cgaacaggaa tatgagacgc
     3181 gtgaacgcaa ggagctggtg ctcgagatgc tgcagacgtt gccggaagat cagcgcacgg
     3241 cgttgttgtt gagggaacag gaacagttga gctatcgcga gattgggcag gtgctgaacg
     3301 tttcggagag caaggtgaag gttgacatat ttcgcgcgcg cgcggcgttg cgcgaacggt
     3361 ggagtaagaa ggtaagagtt gcaagcgcta gcgtgagcta gccggaacca cggatatgaa
     3421 ctgcggattt actgaaaaga tttcttcgtt gatcgatggc gagctctcga cggctgaggc
     3481 gcgcgaggtt gagcgccact tgttgatctg tgcgcagtgt gaagaagcgc gtgctgattt
     3541 tctcaacttg cgcagtcaga tcagtgggtt tgaagcgtcg ctgccgggtg aagtgcagaa
     3601 ccgggcgttg gcgaagatct tgagtaagcc ggcggcgtcc ggtgcgcgac accagtggag
     3661 ttggaattgg ggttatggcg cagtggcgct tgcatcaatt gcgatcgtgg cgctgattgt
     3721 tggctggaac attgtcggtt cgaaagttga tgaacaaccc gtacccgttg cgtaccaatc
     3781 ccccatctcc gcttcgtcac cggaggcgaa accctcgccc acagccgaac cgcaaaaacc
     3841 ggaaagtcca cagcaacaac agccaacacc aaaaccacgc cgcactgctc cggttcgtga
     3901 accgaaaccc ggcgaacagt tcgcgaccgt tccgcgaaac gtgcagccgg ttgtacccga
     3961 aaccactcgt cccgctgata cacaaactat gacggcgctg catttcgaac gcgccgaaac
     4021 gttgctgcgc gcgttcagaa acgtgcggct cgacgagccg agcgccgcgg ccgaagttcg
     4081 ttacgaacgc acgcgcgcca agcaactgat ctatcaaaac atgatgctgc ggcgtgaagc
     4141 cgatgcgtcc ggcgacgttc agatcgcgtc gctgctcgat agtctcgaac cgatcctgtt
     4201 ggacatcgca aaccttccgg acaagccgga caacgacacc gtgcgggtca ttcgcgaacg
     4261 tgtcgaacgt aaaaacatcg tagcgctctt gcaggtcaat tccactgcac tcgctcgtgc
     4321 acttgattag ttctcagtag tcaacactgg ttgacctcag aggcacaggg aatggagagg
     4381 ccatgtgcgt ttttgatcac cgctcgatcg cctgcgctcg ctctcggttc tctgtgcctg
     4441 tggggagcaa ccccgtaaca aagcagtaaa acttctcgaa ggacaaacga cagttatgaa
     4501 gtctctactt acaattcgcc cccaactcaa actcgtcttc gcgcttttgc tctttgccag
     4561 cgtcacgtac gcccaggaca tcgcgaagct cgagaaattc atgcagtcga ccaaagtcaa
     4621 caccgcgtcg atgcagatct ttcgtgaagg ccgcgacctg atcgaagcgc agaactggca
     4681 acgcgcggcg gaaaaattca acgagttcat caaaggctat cctaaagaca aagatctcga
     4741 cgctgcactc tactggcacg gctacgcgct ccagaaacaa ggccgaaccg acgaggccgc
     4801 ggcttcgttg gtgcgcctca tcaatcgtta tccaaattcg aactggcgca acgacgcaca
     4861 ggctttgctg gtgacgttgg gccgcaaagc cgatgtggac caggcgttgg cgcgcgacaa
     4921 ctgcgagatc aagatcctcg cgctccagag cttgtttcag gctgacgaag aacgcgcgat
     4981 cagcatcgtt acagaatcgc tgaaagcgaa tccgaatccg tgtcagggtt tccaggcagc
     5041 ggccgtctcg atgctcggcg cgcacggcgg cgctcgcgca gtgccgatcc tgctcgacat
     5101 cgcgcgcacc aacaccgacg tcaaactccg tctgaccgcg atcaaacgcc tcggcgatca
     5161 gcacaacgag caggtcaccg atgagttgat caaactctac gacgcggatc gaaccaaaga
     5221 agtccgcgtg caaatactgc gtgcgctggt tgagagccga tccccacgcg gcagcgcgaa
     5281 agtgctcgac atcgcccgca gcggcgacga cgtgcagctt cgcctggcag caattcgtta
     5341 cgttggcgaa ctgaaagatg cagcctcgct cgacgaacta atccgcattt acgacgccga
     5401 caaaacgaaa gagatccgcg ccatggtgtt gcgctcactc gcagaacgcg acgatgcacg
     5461 tgcacgagcg aagatttggg agatcgcgcg gcaaggtgag acgcccgagg tgcgcatcga
     5521 agcgattcgc cgcctgagcg atcgcaaaga agttcagctc gacgaactgt tgcaactcta
     5581 caccggcgaa tcagacctgc ggatcaaaca gagcttgttg cgcgcgtttg ctgacatcaa
     5641 cgatccgcgt gcacaggcca agctgttgga cattgcgcgg acaggcgaat cgatcgagct
     5701 gcgcggtttt gcgatccggc agttgggcga caaagacgac gagcagacgg tgacgcaact
     5761 catctcgctc tacgacagcg agcaaaacgt gcaggtcaag gcagtgctga tgcgctcctt
     5821 tggcgactcg aagcacaaag tcgcggtgcg caagctcatg acgatcgcgc gcaacgatcc
     5881 atccgtggaa ctgcgcaaag tggcggtgcg gtatctcggc gacagcaaag atcccgaagc
     5941 gctgaagttt ctcgaggatt tgttgaaata gatcggaggc agatcatgaa gctcccagtg
     6001 gttttgtctt tggtgcttgc ggtagcggcg tgcggtggaa ctgagcttaa ggctcacagt
     6061 ggcgatgaac ttaagactca atccaccgcg acgaccgtgc agggatttac taccgtcgaa
     6121 ggcgccgacc tgatgactaa actcgataac gcgcacgctc aaggacgaat gcgtcaaacg
     6181 ccgtactggt cggcttacac gtttgacgtt cgcccgggcg tcgcgatcga tccggcgatt
     6241 cgcgagtttc gcggcaacat gacgacgatg ggcgacacga cggtgttcgt cggcacggac
     6301 gccagcggca tgactgtcga aacacgcagt ctagcgatct tcctgttgcg cgatccttcc
     6361 gcgaatcaga tcacgcggat ggagatttac aacctcgaac ggaaacgcga gtacagcggt
     6421 tatcccgtct actggctcgg ccgtgcgaac aacgaagaaa gtctcaacta cctgcgcgct
     6481 atcgccgccg caacgccgct cgacacgttg agcgaacgtg cggtgctcgg tattgcagtg
     6541 cacgacgacg cgcgtgtcag cggcatgttg aaaaacttca tcaccagctc gcaaaaccag
     6601 cgcattcgtt ccacgtctgt ttactggttg ggccagacgg gcggcgagct gcagtttctc
     6661 gcgtcgctcg ttcgcagtga tgctgaagat aagaaacttc ggcgcgcggc ggctcatgcg
     6721 atcggcgaga gtcacgaccg cggcacgatg gcggcgattc agagtcttta ccaggacttg
     6781 aaagatcccg agattcgacg cagcgtgatc tcggcagcgg gacacagcga cgaagagcaa
     6841 ccggcgttcg cgtttctgct gggcgttgcg aagagtgata gtgattggga atcacggcgc
     6901 accgcggcgc ggcaactcgg ccgcttccag cgtgacgatg cggcggatga gttgatgaag
     6961 atctacgcga gtgacgcgaa catcgaagtg aagaaagcgg ctttgcgttc actcggcgaa
     7021 acgaagaatc cgaaagcgca gacgcgtctg ctggaaatcg cgcgtaccga cacgaatccc
     7081 gatttgcgca agcaagcggt gcgtgtgctt ggcgagcgtg gcgaagcggc ggttgacgat
     7141 ctgctgaagc tgtttgacac ggaacaggtg ccggaagtgc ggcgcgcggc tttgcagtcg
     7201 ctgtcggaga tcaagagcac gcgcgttgaa gataagttgt ttgaggtggc gcgcggcaac
     7261 gaaccaacgg acatcaagaa gtacgcgatt cgtatgctgg gtgaacgcgt cagcaagcgc
     7321 agttttgagt ttctgagtca gaccgcgcag agcaacgatg caaacgcgga agtgcaagtg
     7381 caagccgtgc gcgcgatcag cgagcgacgt tctgaagagt cagtgccgct gctgatcaag
     7441 atcgcgcgtt cgcacccgaa ccagatggtg cgcaagcagg cgattcgctc gctgggcgaa
     7501 tcaggcgacc cgcgcgcagt cgaattcttc cgcgaagtgc tggccaagta ataaccacag
     7561 agacacggag ccacagagac actcttctcc gtgtctctgt gcctctgtgt ttcaacctaa
     7621 ataactcggt agttcaggaa cacgcagccg ttctttaatt gccggcactc gagcagttcg
     7681 agatcgatgc ggcggtccat ctcggcgaag agcggtatgc ctgagccgag caggaccggg
     7741 tgaatgttga cgccaaactc gtcaaccaat ccggcttcga a
//
LOCUS       DASWTX010000327         3216 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_352367, whole genome shotgun sequence.
ACCESSION   DASWTX010000327 DASWTX010000000
VERSION     DASWTX010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3216
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_352367"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..836
                     /locus_tag="VGD38_05080"
     CDS             <1..836
                     /locus_tag="VGD38_05080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727422.1"
                     /translation="IIFGIGLFLNGFPYFSLSELRIPGVLQRIAVCYFFASIIFLNTR
                     WRTQIGIAIALLLVYWILVAFVPAPGFAAGDLTKEGSLPSYIDRVVFGKHVWAQAKVY
                     DPEGLLSTVPALVTTLIGMLTGHWLRNDKTRMEKVAGMFVAGAVLTAIGWGWNSFFPI
                     NKALWTSSYVMFTGGLALQFLAFCYWLIDIKGYRRWAKPFEIFGMNAIALYVGAGIMA
                     TLFGVINVGNQPLGGWIYENLFASWASPVNASLAFAISFVLVWLFFMWLLYRRRIFIK
                     I"
     gene            complement(801..1754)
                     /locus_tag="VGD38_05085"
     CDS             complement(801..1754)
                     /locus_tag="VGD38_05085"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HEY0727423.1"
                     /translation="MEHIRYSAAACQTDNSNPLDRRGMRANTDRILSMIDSAVVGASP
                     FLPVRLVVFPEFAHAAPVFETAAELIDKLAIPIPNEHTERLQQKAKEHDIYIQSGSML
                     EVDAKWPGRVFNTTCLIGPEGVLYKYRKVNTWLPFEVHTSPHDLPDYDEPLFPVADTP
                     IGKLGCAICYDWLFPEAMRQLTANGAEVLIRVSAYMDPWGATEPMSWWTIVNRCRALE
                     NLAYVVAANQGASLKHYPPYSWPGGSQVVDFDGRLLAEASPGPGERIVVAPIDISALR
                     HERATRRGHLMLGHLRTEAYPVYKNHYYPPLDLDKDPPPVK"
     gene            complement(1758..>3216)
                     /locus_tag="VGD38_05090"
     CDS             complement(1758..>3216)
                     /locus_tag="VGD38_05090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="ASPIC/UnbV domain-containing protein"
                     /protein_id="HEY0727424.1"
                     /translation="RAGSLAQKLETYSAFPAPAPSDIVFGIGKRAAIDAVRVLWPAGI
                     VQAETEIATNKALSLTELDRKPSSCPYLYVWNGTSFEFVTDFMGGGEMGHLDAPGVYN
                     TPDPDEYVRIPSGLLKEKNGRFEFRVTNELEEAIFFDRMQLVAIAHPRETEVYPNEGL
                     TVPAQRFKLFTTRDAKPPLTAVDDHGHDVLERILRIDREYPDDFKLHNIRGFADEHTL
                     TLRLPDQNRVRLLLTGWTDYAWSSDNLAASQSGKALSLPALQVKDKRGEWKTVIENIG
                     IPVGRPQTVIADLTGKFLSESREVRIVTNMRIYWDQILVDTSGGDFATRLTRLSPTVA
                     DLRWRGFSHEYSPNGRDPMTYDYSKVSFTSPWKVMTGRYTREGDVRPLLSATDDIFVI
                     SRPGDELILSFDARKLPPLPKGWKHTFLLYADGFSKEMDINSASPDQVGPLPFHGMSK
                     YPYSWPERYPLTLERQRYLETYNTRVVTSQVATLY"
BASE COUNT          604 a          894 c          981 g          737 t
ORIGIN      
        1 tgatcatttt cggcatcggc ctgttcctga acggatttcc ttacttctcg ctgtctgagc
       61 tgcgtattcc cggcgtgttg caacgcatcg cagtttgtta cttcttcgct tcgatcatct
      121 ttctcaacac gcgctggcgc acgcagatcg ggatcgcaat tgctttgctg ttggtctatt
      181 ggattctcgt cgcgtttgtt ccggcgcccg gatttgcggc cggcgatctg acgaaggaag
      241 gcagcctgcc ttcgtacatc gatcgcgtcg tgtttggcaa acacgtgtgg gcgcaggcga
      301 aggtttacga tccggaaggg ctgttgagca cggtacccgc gctcgtgacc acgctgatcg
      361 gcatgctcac gggccactgg ttgcgcaacg acaaaacgcg catggagaag gtcgcgggca
      421 tgtttgtcgc gggcgcggtg ctgacggcga tcggttgggg ttggaactcg ttcttcccga
      481 tcaacaaagc gctgtggacc agttcgtacg tgatgttcac aggcggtttg gcgctacagt
      541 ttttggcttt ctgttactgg ctgatcgaca tcaaaggcta tcgccgatgg gccaagccgt
      601 ttgagatctt cggcatgaac gcgatcgcgc tttacgtcgg cgcgggaatc atggccacgc
      661 tgtttggcgt gattaacgtc ggcaatcagc cgctcggtgg ctggatctac gaaaacctgt
      721 ttgcgtcgtg ggcttcgccg gtgaacgcgt cgctcgcgtt tgcgatcagt tttgtattgg
      781 tgtggttgtt ttttatgtgg ctactttacc ggcggcggat ctttatcaag atctaacggc
      841 ggatagtagt gatttttgta gaccggatac gcctcggttc gcaggtggcc caacatcaga
      901 tggccgcgcc gcgtagcgcg ctcgtgacgc aacgccgaga tgtcgatcgg cgccaccacg
      961 attcgttcgc ctggcccagg cgacgcttcc gccagcaaac gtccatcgaa gtcgacgacc
     1021 tgactgcctc ccggccatga atacggcgga tagtgtttca aactcgcgcc ctggttcgcg
     1081 gccacgacgt acgcgaggtt ttcgagcgcg cggcaacggt tgacgatggt ccaccacgac
     1141 atcggttcgg tcgcgcccca cggatccatg taagctgaaa cgcgaatcaa aacttccgcg
     1201 ccgttcgccg tcaactgtct catcgcttcg ggaaacagcc agtcgtaaca gatcgcgcag
     1261 ccgagttttc cgatcggcgt gtcggcgacg ggaaagagtg gctcgtcgta atcgggcaga
     1321 tcgtgcgggc tcgtgtgcac ttcaaagggc agccacgtgt tgaccttgcg atacttgtag
     1381 agcacgcctt cgggaccgat caggcacgtg gtgttgaaga cgcgtcccgg ccatttggca
     1441 tcgacctcga gcatcgagcc gctttgaatg tagatgtcgt gttctttggc tttctgttgg
     1501 agacgttcgg tgtgctcgtt cggaatcgga atcgcgagtt tgtcgatcag ctcagccgct
     1561 gtttcgaaca cgggcgctgc gtgtgcaaac tccggaaaga cgacgagccg caccggcaga
     1621 aacggcgatg cgcccacgac ggcggagtcg atcatcgaga ggatgcgatc ggtgttggcg
     1681 cgcatgccgc ggcgatcgag cgggttggaa ttgtccgtct ggcacgcggc ggctgaatat
     1741 ctaatgtgtt ccataaatca atacagcgta gcgacttgcg atgtgacgac gcgcgtgttg
     1801 taggtttcca aatacctctg acgctcgagc gtcagaggat atctttcggg ccacgagtac
     1861 ggatacttgc tcatgccgtg aaacggcagt ggcccaacct gatcggggct cgcggaattg
     1921 atgtccatct ctttgctgaa gccgtccgcg tagagcagga acgtgtgttt ccagcctttt
     1981 ggcagcggcg gcaacttgcg cgcgtcgaaa gagagaatca gttcatcgcc cggacgcgag
     2041 atcacaaaga tgtcgtccgt cgcagacaag agcgggcgca cgtcgccttc gcgtgtgtaa
     2101 cgtccggtca tgaccttcca cggcgacgtg aacgagactt tggaatagtc gtacgtcatc
     2161 gggtcgcggc cgttcggcga atactcgtgc gagaagccac gccagcgcag atcggcgact
     2221 gttggcgaga gtcgagtcag cctcgtcgcg aagtcaccgc cggaagtgtc aacgaggatc
     2281 tggtcccagt agattcgcat attcgtgacg atgcgcactt cacggctctc gctcaaaaac
     2341 tttccggtga gatcggcgat gacggtttgc ggccgcccga cgggaatgcc gatgttttca
     2401 atgacggtct tccactcacc gcgtttgtct ttcacttgca gcgcaggtag cgagagcgcc
     2461 tttccgcttt gcgacgccgc gaggttgtcg ctggaccacg catagtcggt ccagccggtc
     2521 aacagcagtc gcactcgatt ttgatcaggc aagcgcagcg tcaacgtgtg ttcgtcagca
     2581 aaccctcgaa tattgtggag cttgaagtcg tcaggatatt cgcggtcaat ccgcaaaatc
     2641 ctttctaaga cgtcgtgccc gtggtcgtcg acggctgtga gcggcggctt cgcatcgcgc
     2701 gtcgtgaata acttaaaccg ttgcgccgga accgtgagcc cttcgtttgg ataaacctcc
     2761 gtctcccgcg gatgcgcaat cgcgacgagt tgcatccggt cgaaaaagat cgcttcttcc
     2821 agttcgttcg tgacgcggaa ctcaaacctg ccgttctttt ctttcaacag gccacttgga
     2881 atgcgcacgt attcatccgg atcgggcgtg ttgtaaacgc cgggcgcatc gagatggccc
     2941 atctcgccgc cacccatgaa gtccgtgaca aactcgaagc tcgtgccgtt ccaaacgtac
     3001 aggtacgggc acgacgatgg tttgcgatcg agttcggtga gcgagagtgc tttgttcgta
     3061 gcgatctctg tttccgcctg gacgattccg gcgggccaca acacgcgcac cgcgtcgatg
     3121 gcggcgcgtt tgccgatacc gaacacgatg tcggacggcg caggcgccgg aaaggcggaa
     3181 taggtttcga gtttctgcgc gagactgccg gcgcga
//
LOCUS       DASWTX010000328         2034 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_395559, whole genome shotgun sequence.
ACCESSION   DASWTX010000328 DASWTX010000000
VERSION     DASWTX010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2034
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_395559"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1375)
                     /locus_tag="VGD38_05095"
     CDS             complement(<1..1375)
                     /locus_tag="VGD38_05095"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEY0727425.1"
                     /translation="MKTDRILLLAVAIVVLVYGVIYPNAAVVSSSFQKAGSWTLANYR
                     EVLSQAVVIEAIVSSLGLSIGTVVLCALIGVPLAFLFERFTFPGRRLFAAIAALPLVL
                     PPLVGTVAFIFLAGETGILAHGIQNLFGLENPPWRLSGWPALLLFHTYTMYPFFYVLT
                     GAGLRRIDASLAEAARSLGGSRVFVFTRVLVPQLTPSLIAAALLTFMTSMASFSAPLL
                     FGGNVRVLTLEIFTARQRGDMTMAVTETVILAVISLAALIVFQRYEGTRKFAAATMKG
                     APRRRVTIASGKARVLAAAAAVIFAIVLVLPVATLVLVSFAREGSWTTQTLPAEYTLA
                     NYQRLFSDPYAFEVFYNSFSMSAIAALAALVWSFCVVTLLVKRERGKPALLGRSGRRL
                     LSLLILIPWALPGTVVAVSVAEAYGQQSLLLGSFVLVGTFWILPVVYFLRFMPLVVRA
                     LQASMEQV"
     gene            complement(1372..>2034)
                     /locus_tag="VGD38_05100"
     CDS             complement(1372..>2034)
                     /locus_tag="VGD38_05100"
                     /inference="COORDINATES: protein motif:HMM:NF019998.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0727426.1"
                     /translation="QQRVAIARAIAIEPALLLFDEPLSNLDVSLREETRSELRELVTR
                     LGLTAVYVTHDQEEAFALCDRISVMVGGKLMQTGKPRELYEQPGDIAVARFLGRNNLI
                     RAVRLSSSKTTEGEFKTLDGDHTLHMAVTKDELAPMNKPVVLAIRPEHVQLSANNESS
                     ENSLRGTVREIVFAGATSTIRVDANGLLLEALVVQPDGLQVGNECAVILRPDKLRLLR
                     QG"
BASE COUNT          455 a          649 c          582 g          348 t
ORIGIN      
        1 cgacctgttc catactcgcc tgaagcgcgc gaacaaccag cggcatgaaa cgcaggaaat
       61 agacgaccgg caggatccag aacgtgccga ccagcacgaa cgaacccaac agcaaactct
      121 gctgtccgta cgcttcggca accgaaactg cgacaaccgt tcccggcaac gcccacggaa
      181 tcaggatcag caacgagagc aaccgccgtc cgcttcgtcc gagcaacgcc ggcttgccgc
      241 gctctcgttt caccagcagt gttacgacgc aaaaactcca caccagcgct gccagcgccg
      301 cgatcgccga catcgaaaaa ctgttgtaga acacttcgaa cgcgtacgga tcgctgaaga
      361 gccgctgata attcgcgagc gtgtactcgg caggcagcgt ctgtgtcgtc cacgatcctt
      421 cgcgagcgaa actcaccagg acgagtgttg cgaccggcag cacgagaacg atcgcgaaga
      481 tcaccgctgc cgccgctgcg agcacacgcg ctttgccgct cgcgatcgtc actcgcctgc
      541 gtggcgcacc tttcatcgtc gcggccgcaa acttccgcgt gccttcgtaa cgttggaaca
      601 caatcaacgc cgcgagcgag atcaccgcga ggatcacggt ttcggttacg gccatcgtca
      661 tgtcgccgcg ttgccgcgcg gtaaagatct cgagcgtcag cacgcgcacg ttgccgccga
      721 acaacagcgg cgcgctgaac gacgccatcg acgtcatgaa cgtcagcagt gccgcggcga
      781 tcagcgacgg cgtgagttgc ggtaccagca cgcgtgtgaa aacaaagacg cgcgagccgc
      841 cgagactacg cgctgcttca gccagactgg catcaatccg tcttagtccc gcacccgtga
      901 gcacgtagaa aaacggatac atcgtgtaag tgtgaaacag gagcaacgcg ggccagccgc
      961 ttaatcgcca cggcgggttt tccaatccga aaagattctg aatgccgtgc gcgaggatgc
     1021 cggtctcgcc ggccaggaag atgaacgcga ccgtgccgac gagcggcggc agcacgagcg
     1081 gcaacgctgc aatcgccgcg aacaggcgcc gtcccgggaa cgtgaaccgt tcaaaaagaa
     1141 acgcgagcgg cacgccgatc agcgcacaca acacgaccgt gccgatcgac aacccgagac
     1201 tgctgacgat cgcttcgatc accacggctt gcgacagcac ttcgcgatag ttcgcgagcg
     1261 tccacgaccc tgctttctga aaggagctgg aaacgacggc ggcgttcgga taaatgacgc
     1321 cgtagacaag cacgacgatc gcaaccgcga gcaagaggat tcgatcggtt ttcatccctg
     1381 tctaaggagc cttagcttgt cgggacgaag aatcacagcg cactcgttac cgacctgcaa
     1441 cccgtccggc tgtacgacca gcgcttcaag cagcaacccg ttagcgtcaa cgcggattgt
     1501 agacgtcgca ccggcgaaga cgatctcgcg cacggtgccg cgcaacgaat tctccgagga
     1561 ttcgttgttg gcgctgagtt gcacgtgctc cggacgaatc gccagcacga cgggtttgtt
     1621 catcggcgcc agttcgtcct tcgttacggc catgtgaagc gtgtggtcgc cgtccagcgt
     1681 cttgaactcg ccttcagtcg tcttgcttga acttaaacga acggcgcgaa tgaggttatt
     1741 gcgtccgaga aaacgcgcga ccgcgatgtc gcccggttgt tcgtaaagct cgcgcggctt
     1801 gcccgtttgc atcagttttc cgccgaccat cacgctgatg cgatcgcaca acgcgaatgc
     1861 ttcttcctga tcgtgcgtca cgtaaaccgc ggtcagcccg agacgcgtca ccagttcgcg
     1921 caactcgctg cgagtttctt cgcgtaacga cacgtcgaga ttcgaaagcg gttcgtcaaa
     1981 cagcagcaac gccggttcga tcgcgattgc gcgcgcgatg gcgacgcgct gttg
//
LOCUS       DASWTX010000329         1857 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_198457, whole genome shotgun sequence.
ACCESSION   DASWTX010000329 DASWTX010000000
VERSION     DASWTX010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1857)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1857)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1857
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198457"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..482)
                     /locus_tag="VGD38_05105"
     CDS             complement(<1..482)
                     /locus_tag="VGD38_05105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727427.1"
                     /translation="MAEFPKIDLKYLKEAFKEPINFWGMAGFAVAAAYVQDVTPLVAA
                     LATETLYLATVPASSVYRRLIDRREKQRLLKLREQQREAQIKLFDPREREAVEYLRWM
                     KNQIYSNYKKFTGTKQIPHNIQSLDQRWEDFVDLLDVYRRRKHHLRSINRQLVQNQLV
                     "
     gene            complement(543..1304)
                     /locus_tag="VGD38_05110"
     CDS             complement(543..1304)
                     /locus_tag="VGD38_05110"
                     /inference="COORDINATES: protein motif:HMM:NF015945.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspA/IM30 family protein"
                     /protein_id="HEY0727428.1"
                     /translation="MGLWTRMKRSMRALFGGMIEKTEDPELILQQTIRDMRDRVPELN
                     NSVAQVMATEKLLAKNKERLESQQVDLDSKIRASVKMGRDDIATAYIGQLQQVQIDLQ
                     KTTQQLEHAGNASKQALKARDNYVLQMQRRTAEAMQLINQSKQAKLQEQLAQTMESFQ
                     LGDDASTINEMRDKIDRRAAAAEAKMPLGSASVDTQMQEIEREALDMQLADKLLAYKR
                     DMGLLGSGSDAPTPQALPAEGETTGGNNGTGGRTG"
     gene            complement(1481..>1857)
                     /locus_tag="VGD38_05115"
     CDS             complement(1481..>1857)
                     /locus_tag="VGD38_05115"
                     /inference="COORDINATES: protein motif:HMM:NF014856.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoribosylglycinamide synthetase C
                     domain-containing protein"
                     /protein_id="HEY0727429.1"
                     /translation="EIFEAMQRGTLANVKVEWSGGASACVVAANRGYPGKYESGAEIE
                     GLEAVAENSQVQVFHAGTSRAPNGKFIATGGRVLGVTSAAGDLPGALDLCYDALGKIH
                     WEGMQFRRDIGGVRGRQSGRSS"
BASE COUNT          374 a          542 c          478 g          463 t
ORIGIN      
        1 tggaccagtt ggttctggac caactgccgg ttgattgatc gcaggtggtg cttgcgccgg
       61 cgataaacgt cgagcagatc cacgaagtct tcccagcgct gatcgagact ctgaatgttg
      121 tgagggatct gcttggtgcc ggtgaatttt ttgtagtttg agtagatctg attcttcatc
      181 cagcgcaggt actcaactgc ttcacgctca cgtggatcga acaacttgat ctgcgcttca
      241 cgttgctgct cgcgcaactt aagcaatcgc tgtttctcac gacgatcaat cagacgacga
      301 tagacagaac ttgccggcac agtcgcaaga taaagtgttt cagtagccaa cgctgcaacg
      361 aggggcgtga catcctgcac gtacgcagcc gcaactgcaa atccggccat cccccaaaag
      421 ttgatgggtt ctttgaaggc ctctttcaga tacttcagat caatcttggg aaactcggcc
      481 ataaacttat tgaaacccgc gtcggaacta atatcgaaat taatgccggg atggaatcaa
      541 cgtcaaccag tgcgaccacc agtgccgttg ttgcctccag ttgtttcacc ttcagccgga
      601 agagcctgcg gtgtaggagc atcgctccct gaacccaata gacccatgtc gcgcttgtac
      661 gcgagcagct tgtcagccaa ttgcatgtcg agggcttcgc gctcgatctc ctgcatttgc
      721 gtgtcaaccg aagctgaacc caatggcatc ttcgcttcgg ctgccgctgc gcggcgatcg
      781 atcttgtcgc gcatctcgtt gatggttgat gcgtcgtcgc ccaactggaa cgactccatc
      841 gtttgcgcga gctgttcctg aagctttgcc tgcttcgact gatttatcaa ctgcatcgct
      901 tccgcggtgc gacgctgcat ttgcagcacg taattgtcac gtgccttaag tgcctgtttc
      961 gatgcgttgc ccgcgtgctc aagttgctga gttgtttttt gcagatcgat ctgaacttgt
     1021 tgtagctggc cgatgtaagc agtggcgatg tcgtcgcgtc ccatcttcac agacgcgcgg
     1081 atttttgaat cgagatcgac ttgctgcgat tcgaggcgtt ccttgttttt ggcgagcagc
     1141 ttttcagtcg ccatcacctg cgccacggag ttgttcaact cgggcacgcg gtcgcgcatg
     1201 tcgcgaatag tctgctgcag aatgagctcg gggtcttccg tcttctcaat catccctccg
     1261 aagagggcgc gcatcgagcg cttcattctt gtccaaagtc ccatttccgc tcatcctccg
     1321 acagcgaaat ctgaaagctc taacgttggt agcgccggcc cgaaaagcgg caattgcggc
     1381 cactggcaac gttctgttgt acgacacata cgttcgggca gtttcatgtc cgggaaactg
     1441 tcttcggagt ataacagcac tgttcaaagc cttccacaca tcacgacgag cgtccgcttt
     1501 gacgtcctct aacacctccg atgtcgcgcc ggaactgcat tccctcccaa tgaattttcc
     1561 ccagcgcgtc gtaacaaagg tcgagtgcgc cgggcaggtc tccggcggct gacgtaacac
     1621 ccagaacgcg gccgcccgtg gcgatgaatt ttccgttcgg agcgcgcgaa gttcccgcgt
     1681 gaaagacctg aacctgactg ttttcagcaa ccgcttccaa cccttcgatc tcggcgccgc
     1741 tttcgtattt acctggatat ccgcgattcg cggccaccac gcacgccgaa gcgccgccgc
     1801 tccactcgac tttcacgttc gccagagttc ctcgttgcat tgcctcgaaa atctcgg
//
LOCUS       DASWTX010000330         3031 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_308946, whole genome shotgun sequence.
ACCESSION   DASWTX010000330 DASWTX010000000
VERSION     DASWTX010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3031)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3031)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3031
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308946"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(103..1572)
                     /locus_tag="VGD38_05120"
     CDS             complement(103..1572)
                     /locus_tag="VGD38_05120"
                     /inference="COORDINATES: protein motif:HMM:NF012927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase"
                     /protein_id="HEY0727430.1"
                     /translation="MWKFARPIRHKIEETRWPTAEEAARSKLFSPIKIGRRLEARSRT
                     WVPAMVPWRATEDGFVTQQNLDWYRRFAEGRPGVLVVEATGVRDIPSGPLLRIGDDRF
                     IPGLRKLVDVVKEASRGETLLFIQIIDFLSVKRRPEKAKYFQRFLKIDDQHRRALAEI
                     TQRSDWPSDAEVRSFLESADEGFLERILTPRELEALYFGYRERVTDTHLEHIARLPQE
                     LPPIFAAAAERAREAGFDGVELHYAHAYTMAGFLSRQNDRVDGYGGSPENRVRLPLEV
                     FRAVRDRVGDDYVVGVRFLADEVIEGGSRVEDAIFYAKEFARAGFDFLSLSKGGKFED
                     AQRPKVGQAVYPYTGKSGYECMPTVLSDEVGPFGRSVPLMASVKRAVNAAGFQTPVVT
                     AGGITTFEQAENILLRGQADIVGMARQALADPDWFLKVRLGRGDEVRRCTYTNYCEAL
                     DQAHRPVTCKLWDRVDLDEPGIATVDDGRRRLEPPAWRQ"
     gene            1625..2812
                     /locus_tag="VGD38_05125"
     CDS             1625..2812
                     /locus_tag="VGD38_05125"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY0727431.1"
                     /translation="MSDELLKWRSEFPILDKTVYLISHSLGAMPRATYDRLHEYADRW
                     ASRGVRAWAEGWWDMPVTVGDEVARIIGADPGTVVMHQNVSICQSLVLSCLEPTPERN
                     KIVYSELNFPSVMYVYEAHARDGKLRIEIVKSDDGITVPLERFLEAIDESTLLVPFSH
                     VLFKSAFLQDAQAIIKRAHEVGAMVVLDTYQSAGTVPFSVKELDADFATGGSVKWLCG
                     GPGAGYLYVRPDLQATLEPKTTGWMAHEQPFAFDTSLRYAPNITRFLHGSPAIPALYA
                     AESGYKIINAIGVDKIREKSTRQTSYLIELAEEAGFRVTSPRDPERRGGTITVAHEHA
                     GAITKELIRREFIVDYRPGAGVRISPHFYNTDEELELVIAEMKKIAESDAYLEHEAAG
                     AAF"
     gene            2812..>3031
                     /locus_tag="VGD38_05130"
     CDS             2812..>3031
                     /locus_tag="VGD38_05130"
                     /inference="COORDINATES: protein motif:HMM:NF015272.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004833 - tryptophan 2,3-dioxygenase
                     activity [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0019441 - tryptophan catabolic process to
                     kynurenine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan 2,3-dioxygenase family protein"
                     /protein_id="HEY0727432.1"
                     /translation="MSNTYGDKPPLSYNEYLRVQDLIKLQDLLSDPAHHDELLFITVH
                     QAYELWFKQVLHELDASIQFLGEDRLPAA"
BASE COUNT          652 a          946 c          840 g          593 t
ORIGIN      
        1 ggatctggct tttagtgtga tgacgcgtag cggcaaggtc acttacgacg atctaaaaaa
       61 gcgagcgccg gagttcattc aagcttacga agcagcaaga ggtcactgac gccaggctgg
      121 cggctccagc cgtcgtctgc cgtcgtcaac ggtcgcaatc cccggctcat cgaggtcaac
      181 acgatcccac agtttgcacg tgaccggccg gtgcgcctga tcgagcgcct cgcagtaatt
      241 cgtgtaagtg caacgccgaa cttcatcacc acgcccgagt cgcaccttta aaaaccaatc
      301 aggatctgca agcgcctgac gcgccatgcc gacgatatcc gcctgcccgc gaagcagaat
      361 gttttctgct tgttcgaacg tcgtaatgcc acccgccgtc acgaccggag tttgaaaccc
      421 cgccgcattc accgcgcgtt tgacggaagc catcaacggt acgctgcgcc cgaacggacc
      481 aacctcatcc gacaacacag tcggcataca ctcgtaaccg ctctttcccg tgtacggata
      541 aaccgcctgg cccaccttcg gccgttgcgc gtcttcaaac ttgccgccct tcgacagcga
      601 caggaaatca aacccggcac gcgcgaactc tttcgcgtaa aagatcgcat cctcgacacg
      661 gcttccacct tcaatcactt catccgcaag aaaccgcacg ccgacaacgt aatcatcacc
      721 aacacgatct ctcacggcgc gaaaaacctc gagcggcaac cgaacgcggt tctccggcga
      781 gccgccgtaa ccatctactc gatcgttctg ccggctaaga aaacccgcca tcgtgtaggc
      841 gtgtgcgtaa tgaagctcga cgccgtcaaa cccagcctca cgcgcccgct ccgcggccgc
      901 agcaaaaatc ggcggcagtt cctgcggcaa tcgtgcgatg tgttcgagat gtgtatccgt
      961 aacacgctct cgataaccga agtagagcgc ctcaagctct cgcggcgtga ggatcctttc
     1021 caaaaatccc tcatccgctg actctaaaaa actacggacc tctgcgtcac tgggccagtc
     1081 gctgcgttgc gtgatttcgg ctaacgcccg gcggtgctga tcgtcgatct taagaaaccg
     1141 ttgaaagtat ttcgccttct ccggccgccg cttcaccgac aggaagtcga tgatctgaat
     1201 gaacaacaac gtctcaccgc ggctcgcttc tttcaccacg tcgacgagct tgcgcaaccc
     1261 ggggatgaac cggtcgtcgc cgatgcgcag caatggacca ctcggaatgt cgcgcacgcc
     1321 agtcgcctca accaccaaca cacccggacg cccttcggca aagcgacgat accagtcgag
     1381 attttgctgc gtgacgaacc cgtcctcggt cgcacgccac ggcaccatcg caggcaccca
     1441 cgtacgactc cgcgcctcca aacgccgccc gatttttatc gggctaaaga gttttgagcg
     1501 ggctgcttct tcggccgtgg gccagcgagt ctcttctatc ttgtgtctga ttggccgcgc
     1561 gaacttccac atcttagcca cagattacac gattctggta catttaccgc aggagggttc
     1621 cttcttgtca gacgagttat tgaagtggcg cagcgagttt ccgattctcg ataagaccgt
     1681 ttacctgatc tcgcacagtc tgggcgcgat gccgagggca acgtacgacc ggctgcacga
     1741 gtatgccgac cggtgggcgt cgcgcggcgt gcgcgcgtgg gcggaagggt ggtgggacat
     1801 gccggtcacc gtcggcgacg aggtcgcgcg catcatcggc gcggacccgg gcaccgtcgt
     1861 gatgcaccag aacgtttcca tctgccaatc gctggtgctg tcgtgcctcg agccgacacc
     1921 cgagcgaaac aagatcgttt actccgagct caatttcccc tcagtgatgt acgtctacga
     1981 agcgcacgct cgcgacggca aactgcgtat cgagatcgtg aagtctgacg acgggatcac
     2041 ggtgccactc gaacgttttc tcgaagccat cgacgagtcg accttgctcg tgccgttctc
     2101 gcacgtgctg ttcaagagcg cgttcttgca ggacgcgcag gcgatcatca agcgcgcgca
     2161 tgaagtcggc gcgatggtcg tgctggatac gtatcaatca gcgggcactg ttccgttcag
     2221 cgtgaaagag cttgacgcgg atttcgcgac tggcggatcg gtaaaatggt tgtgcggtgg
     2281 accaggcgcc ggctacctgt acgtgcgtcc cgatctgcaa gcgacactgg aaccgaaaac
     2341 aacgggctgg atggcccacg agcagccgtt tgcgttcgac acttcgctgc gctatgcgcc
     2401 aaacatcacg cgctttctgc acggctcgcc cgcgattccc gcgctctacg cggcggagtc
     2461 gggctacaaa atcatcaacg cgatcggcgt cgacaagatt cgcgagaaga gcacgcggca
     2521 aacgagttac ctgatcgaac ttgctgaaga agcggggttc cgcgtaacca gtccgcgcga
     2581 tcctgaacgg cgcggcggaa cgatcaccgt ggcgcacgag cacgcgggcg cgattacgaa
     2641 agaattgatt cgccgtgagt tcattgtcga ctaccggccg ggtgcgggag ttcgtatctc
     2701 gccgcatttt tacaacactg acgaagagct tgaactcgtg atcgcggaga tgaagaagat
     2761 cgcggagtca gacgcgtatc tcgaacacga agcggcggga gcggcgtttt aatgtccaat
     2821 acgtacggcg acaaaccgcc actttcatac aacgaatatc ttcgcgtgca ggacctgatc
     2881 aagttgcagg acctgctgtc ggatccggcg catcacgacg agctgctgtt catcacggtg
     2941 caccaggcgt acgagttgtg gttcaaacag gtgctgcacg agctcgacgc gtcgattcag
     3001 tttctcggag aagatcgtct gcctgccgcg a
//
LOCUS       DASWTX010000331         4960 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_415594, whole genome shotgun sequence.
ACCESSION   DASWTX010000331 DASWTX010000000
VERSION     DASWTX010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4960
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_415594"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..380)
                     /locus_tag="VGD38_05135"
     CDS             complement(<1..380)
                     /locus_tag="VGD38_05135"
                     /inference="COORDINATES: protein motif:HMM:NF013161.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEY0727433.1"
                     /translation="MIKTDLPLTITRVRDQARHTRSFDLRVQDGQHVDFVPGQVAMLR
                     VADQAPAYFAFASAPEDPDLEVLVKQKTGASQLIYDLQPGDTVDLAGIAGHGFRMDQH
                     KHRDLIFVAMGTGVAPLRSALRHA"
     gene            441..1088
                     /locus_tag="VGD38_05140"
     CDS             441..1088
                     /locus_tag="VGD38_05140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727434.1"
                     /translation="MNRKPNRVAPVLLLLLLVAFCAVVSQAQSGRRQPKAPSAAPIPT
                     PTPEPTPAPKPPEEESEIGFIIGSDRIGTFHNFPISYYEAAMQGCADRLRSGSSAAVS
                     IAQGNMNRGEAIKKAKGETKTYVVYMNLLLDNMTAQSYDDLEIDYVVFAPQTAKVVNS
                     GRTFLRAVRKGPIVVGPSSTRRSGALYREELIRQAGEDAGERILKALNLDIPVRR"
     gene            complement(1091..2947)
                     /locus_tag="VGD38_05145"
     CDS             complement(1091..2947)
                     /locus_tag="VGD38_05145"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HEY0727435.1"
                     /translation="MSNLAADISVAQPMPVRRPFAPDEPHTLIDVFNRAARVHNRPDA
                     LNYKSGGRWVSISSDEMLARAKDIAAGLYAIGIRHGDRVALLSDSRVEWTLADAGCLF
                     ASAVDVPIYPTLTPPQVRYILKDSGSSALFLANREKFLEMKEILGECPQVEHVIFFDA
                     DGVTEADGLTLAQLEAKGRDLEQRDPGLIDRMAAETTSDDLATIIYTSGTTGEPKGVM
                     LTHENLVSNLIDSCGHLTIGEQDTVLSVLPLSHVFERQAMYMYLHHGMAVYFAESLLT
                     VASNMREVRPTLLVGVPRMFEKIYQRIRERAAEAGKVATALLEWSVSVAREYAAYAGR
                     RKGIPATLKFKHWIAMKLVFSKWHDAFGGRMRLLLSGGAALPEDLARIYIGAGIPIIQ
                     GYGLTETSPVVTASSFEDYRVGTVGRAIPHVDIRIAQDGEIEVRGPNVMRGYYNKPEE
                     TRAAFTDDGWFKTGDIGTIDADGFLRITDRKKELFKTSGGKYIAPSPIQEAIKGSRFV
                     NQVVLVGSERKFPAALIVPVWEQLESYCKLKGIEVQSRNEMCHHPRIIDLLQRQIDGL
                     TPNLARYEKIKKVALLPNEFTIEGGELTPTLKVKRRVIDEKYRDVIEKLYEE"
     gene            complement(2944..3561)
                     /locus_tag="VGD38_05150"
     CDS             complement(2944..3561)
                     /locus_tag="VGD38_05150"
                     /inference="COORDINATES: protein motif:HMM:NF019958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEY0727436.1"
                     /translation="MRSARTLNNNFVRAGGDKREAILRAAITVFAHNGYFNSKVADIA
                     REAGVADGTVYLYFKSKEEILHSIFDRSVDEALASAREQIELITDPRDKLRRIALLHL
                     ERLGADRDLAVVFQVELRGSTKFMEEFSAAGFAEYLALIRTTFEEGQRAGVFRSDLNA
                     NVVAKIVFGALDEMATNWILSKRRYKLAPMADQVLDILLNGVKAS"
     gene            complement(3598..4557)
                     /locus_tag="VGD38_05155"
     CDS             complement(3598..4557)
                     /locus_tag="VGD38_05155"
                     /inference="COORDINATES: protein motif:HMM:NF044972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HEY0727437.1"
                     /translation="MEFSFMVFSGMALLLQDSASVIARVWAYLTQTFTFGRITVSVSS
                     VLIGVLVFTATIVLARYLSTFIEGRLQLRSHIDPGLRYTICRLVRYFVITIGTLVSVK
                     QAFAVDLTSIAVIFTALSVGIGFGLQYLAADIASGFILLFERPIRVGDRITIGEDEGD
                     VESINLRTTIVSTNDRIAIIVPNSKLVAQRVINWSYGDPRARIAIQIGVADDSDIDLV
                     TRTLIDAATGVEHVLTDPPPRVQFMKFGEYSLDFRLLVWTRTPRRHVQIRSDINYRIF
                     RLFKDRDIKIPYPTQEFLFKGGPLPQDLGPVMRGDDNGPRMQD"
     gene            4667..>4960
                     /locus_tag="VGD38_05160"
     CDS             4667..>4960
                     /locus_tag="VGD38_05160"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0727438.1"
                     /translation="MRTPVFRSFPRFLTFAASLVLTLLLAPAIAAQTQITTGVIRGTV
                     VDANEASVPGANVEIKNVDTGDTKSLTSDEDGRFVALQLQPGKYSVTISKQGFA"
BASE COUNT         1122 a         1500 c         1332 g         1006 t
ORIGIN      
        1 aacgcgtgac gcagcgccga acgcagcggc gcgacgccgg tgcccatcgc gacaaagatc
       61 aggtctcgat gcttgtgctg atccattcga aagccgtgtc cggcgatgcc ggcaagatcg
      121 accgtatcgc cgggttgcag atcgtagatc aactggctgg cgccggtttt ctgtttgacc
      181 agcacttcca ggtccggatc ttcaggcgcg ctcgcgaacg caaaatatgc gggcgcctga
      241 tcggccacac gcaacatcgc gacttgaccg ggtacgaaat cgacatgctg accgtcctga
      301 acacgcagat cgaaggaacg cgtatgtcgc gcctgatcgc gcacgcgggt aattgtgaga
      361 gggagatctg tcttgatcat cggttttgag tgtagcaatt ttcggcggca gtgctacaat
      421 cttgccctgt ttttccgccc atgaaccgca agcctaacag agtcgcgccg gtcttgttgc
      481 ttctgctgct ggttgcgttc tgcgccgttg tgtcgcaggc acagtcaggc aggagacaac
      541 cgaaagcgcc gtcggccgcg ccgattccca cgccgactcc ggaaccgaca ccagcaccaa
      601 agccgccgga agaggagtcc gaaattggtt ttatcatcgg aagcgatcgt atcggcacct
      661 tccacaattt tccgatctct tattacgagg ccgcaatgca gggttgcgcc gatcggctgc
      721 gctcaggttc ttcggcggca gtgtcgatcg cacagggcaa catgaaccgt ggcgaggcga
      781 tcaagaaagc caaaggcgag accaaaacct acgtcgtcta catgaatttg ttgctcgaca
      841 atatgacggc ccaatcgtat gacgacctcg aaatcgatta cgtcgtcttt gcgccgcaaa
      901 cggcaaaggt cgtaaacagt ggccggactt ttctccgcgc cgtgcgaaaa ggccccatcg
      961 tcgttggccc aagctcaacc aggcgctcgg gcgcactcta tcgcgaagaa ctcatcagac
     1021 aagccggcga ggatgccggc gaaagaatcc tcaaagccct caacctcgac attccggtta
     1081 gacgttaaga ttattcctcg tagagcttct cgatcacgtc gcgatacttc tcgtcgatca
     1141 cgcggcgctt aacttttagg gttggggtga gctcgccgcc ttcgatggtg aattcgttgg
     1201 ggagtagggc gaccttcttg atcttttcgt agcgtgcgag gtttggcgtc agaccgtcga
     1261 tctggcgctg gagaagatcg atgatgcgcg ggtggtggca catctcgttg cggctctgaa
     1321 cttcaatccc tttcagctta cagtacgact ccaactgctc ccacaccggc acgatcaacg
     1381 ccgcgggaaa cttgcgctcc gatccgacca acaccacctg attgacaaac cgcgatccct
     1441 tgatcgcctc ctggatcggc gaaggcgcga tgtatttgcc gccggaagtc ttgaacaatt
     1501 ccttcttccg atccgtgatg cgcagaaaac catccgcgtc gatcgtgccg atatcgcccg
     1561 tcttgaacca gccatcgtca gtgaacgccg cgcgtgtttc ttcgggcttg ttgtaataac
     1621 cacgcatcac gtttggccca cgcacctcga tctcgccgtc ttgcgcaatg cgtatgtcga
     1681 cgtgcggaat ggcccggccg accgtgccga cgcgatagtc ttcaaacgag ctcgcagtga
     1741 caacaggcga cgtttccgtc aatccgtaac cctgaatgat cggaatgccc gcgccgatgt
     1801 aaatgcgtgc gaggtcttca ggcaaagcgg cgcctcccga cagcagcagt cgcatccgtc
     1861 cgccaaaagc gtcgtgccat ttcgagaaga cgagcttcat cgcgatccag tgtttgaact
     1921 tcagcgtcgc cggaatcccc ttacgtctgc cggcgtacgc cgcatactcg cgcgccaccg
     1981 aaacggacca ctccagcaac gccgtcgcca ccttccctgc ttcagccgca cgctcgcgaa
     2041 tgcgttgata gatcttctca aacatccgcg gcacgcccac cagcaacgtg ggccgcactt
     2101 cgcgcatgtt cgacgcaacc gtcagcaacg actccgcaaa ataaaccgcc atcccgtgat
     2161 gcaggtacat gtacatcgcc tgccgctcaa acacatgcga cagcggcaac accgacagca
     2221 ccgtatcctg ctcgccaatc gtcaggtgtc cgcacgagtc gatcaaatta gaaacgagat
     2281 tctcgtgcgt gagcatcacg cctttgggtt cgccggtcgt tcctgaagtg tagatgatgg
     2341 tggcgagatc gtctgacgtt gtttccgcgg ccatgcgatc gatcagaccg ggatcgcgtt
     2401 gttcgagatc gcgccccttc gcttcgagtt gggccaacgt caaaccgtct gcttcagtca
     2461 cgccatccgc atcaaaaaag ataacgtgct caacttgcgg acactcgccg agtatctctt
     2521 tcatctcgag aaacttttcg cggttcgcaa gaaacagcgc gctcgagccg gagtctttca
     2581 ggatgtaacg cacctgcggc ggggtcagcg tcggataaat cggaacgtcg accgcgctcg
     2641 caaacagaca acccgcatcc gcgagcgtcc attcaacgcg gctgtcggaa agcaacgcca
     2701 cgcgatcgcc gtgacgaatt ccgatcgcgt aaagtccggc cgcgatgtcc ttcgcacgcg
     2761 cgagcatttc gtccgacgag atcgagaccc aacgcccgcc gctcttgtag ttcaacgcgt
     2821 ccggccggtt gtgcacgcgg gccgcgcgat tgaagacgtc gatcagcgtg tgcggttcgt
     2881 caggcgcaaa cggccgccga acgggcatcg gctgcgccac tgaaatgtca gcggccagat
     2941 tactcacgac gctttgactc cgttgagcag aatatcgagc acctgatcgg ccattggcgc
     3001 gagcttgtag cggcgcttgg agaggatcca gttcgtggcc atttcgtcga gcgcgccgaa
     3061 cacaatcttc gcgaccacgt ttgcattcag atcgctgcga aacacgcccg cgcgttgtcc
     3121 ttcttcaaac gtcgtgcgaa tcagcgcgag atactcggcg aaacccgcgg cggaaaactc
     3181 ctccataaac ttcgtcgagc cgcgcagttc gacctgaaac acgaccgcca gatcgcgatc
     3241 ggcgccgagc cgttcgagat gcagcaaagc aatgcggcgc agcttgtcgc gcggatcggt
     3301 gatgagctcg atctgttcgc gtgcggacgc cagcgcttcg tcaacactgc gatcgaagat
     3361 cgagtgaagg atctcttcct tacttttgaa ataaagatag acggtgccat cggcgacgcc
     3421 tgcttcacgc gcgatgtcgg cgactttgga attgaaatag ccgttgtgag cgaagacggt
     3481 aatggcggcg cgcaggattg cctcgcgttt atcgccgccg gcgcgcacga aattattgtt
     3541 taaggttcgg gccgaacgca tgttgtactg aatgatgcct cattcagtgc tcccttttca
     3601 atcctgcatg cgcggtccgt tgtcgtcacc gcgcattacc ggtcctaaat cctgcggcaa
     3661 aggtccgcct ttgaacagaa attcctgggt tggataggga attttaatat cgcggtcctt
     3721 gaagagtcgg aagatgcgat agttgatgtc gctgcgaatc tgcacgtgcc gacgcggcgt
     3781 cctggtccac accagtaaac gaaaatccag cgagtactcg ccaaacttca tgaactgcac
     3841 gcgcggcggc ggatccgtca gcacgtgttc gacgcccgtc gccgcatcaa tcaacgtcct
     3901 cgtcaccagg tcgatatcag aatcatcagc cacgccgatc tgaatcgcga tgcgcgcacg
     3961 cggatctccg tacgaccagt tgatcacacg ctgagcgacg agcttcgaat tcggtacgat
     4021 gatggcgatg cgatcgttgg tcgaaacaat cgtcgtgcgc aaattgatgc tctcgacgtc
     4081 gccttcgtct tcgccgatcg tgatccggtc gccgacgcga atcggacgtt cgaacagaag
     4141 aatgaaaccg gaagcgatgt cagccgcgag atactgaaga ccaaaaccga tgccgactga
     4201 caacgccgta aagatcacgg cgatcgacgt caggtcaact gcaaacgcct gcttgaccga
     4261 gacgagcgtc ccgatagtga tcacgaaata ccgaaccagc ctgcaaatcg tgtaacgcaa
     4321 ccccggatcg atatgcgaac gcagttgcag gcgtccttcg atgaaggtgc tcaagtaccg
     4381 cgctaaaaca atcgtcgcag tgaaaaccag cacgccgatg agcacgctgg aaaccgaaac
     4441 ggtaatcctc ccgaaggtaa aggtctgtgt gaggtaagcc caaacgcggg cgataacact
     4501 cgcagaatcc tgcaacagca acgccatccc cgaaaacacc ataaaactga actccatctg
     4561 aactcagaac ttcattgaca catccataag gtctaactaa tctagccccg gccaataact
     4621 tgagcatacc cgagcacacc accggaccca actataggag aaaactatgc ggacccctgt
     4681 ttttcgcagc ttcccccggt ttctaacctt cgcagccagt ctagtattaa ccctgttgct
     4741 cgccccggca atcgcagccc agacgcagat cacgaccggc gtcatccgcg gcaccgttgt
     4801 tgacgcaaat gaggcgtcag ttccaggcgc caacgttgag atcaaaaacg tggataccgg
     4861 tgataccaaa tcacttacaa gcgatgagga cgggcgtttc gttgctcttc aattacaacc
     4921 gggaaaatac tcggtcacca tttccaaaca aggttttgcc
//
LOCUS       DASWTX010000332         1992 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_263924, whole genome shotgun sequence.
ACCESSION   DASWTX010000332 DASWTX010000000
VERSION     DASWTX010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1992)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1992)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263924"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            96..1226
                     /gene="dprA"
                     /locus_tag="VGD38_05165"
     CDS             96..1226
                     /gene="dprA"
                     /locus_tag="VGD38_05165"
                     /inference="COORDINATES: protein motif:HMM:TIGR00732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HEY0727439.1"
                     /translation="MISDWVELNMTPGIGPRAAAKILERFGSAESVYNATRTELEQLR
                     LAPEAIDSIISRVLRSTAEAEIAAVRKLGGDILLLDDGVYPSSLREIYDPPIVLYVKG
                     AWAECLDQPCIGVVGSRKCSTYGQNAANMLARDLAQRELTVVSGFARGIDAAAHRGAL
                     EAGGRTVAVLGTGIDEVYPRDHKKLAEEILASGGALVSQFPLGTPPVSENFPYRNRII
                     SGLSLGIVVVEAAENSGSLITARLAMEQNREVYAVPGNITSRNSFGTNYLIKGAGAKL
                     VQQWQDIAAELPQDLAARLLPPPVTRSQSSLAEKLAFVPEGLSQSETSVFRLLSHDSP
                     AHVDWLVDKSKLPISDLTAALLALEMRELVRALPGKCFVRKL"
     gene            1227..>1992
                     /locus_tag="VGD38_05170"
     CDS             1227..>1992
                     /locus_tag="VGD38_05170"
                     /EC_number="5.6.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF013878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase"
                     /protein_id="HEY0727440.1"
                     /translation="MSKNLVIVESPAKAKTINKYLGKDYLVKASIGHIKDLPSKGLGV
                     DVEHNFEPTYELIPDSKKRNNKKIVAELKKAAKEADAIYLAADPDREGEAICQHLAEE
                     IVPKRPAKPTYRVMFNEITKRAVNAAFEDPRQIDGNLVEAQQARRVLDRLVGYKVSPL
                     LCRTIGGRLSAGRVQSVALRMVVEREREIEQFVKTEYWTIGANLSAKLPPAFEARLFK
                     VGEQTVKTSGFDQELKKNEILINDQALADRLVDEAQQ"
BASE COUNT          479 a          535 c          596 g          382 t
ORIGIN      
        1 ttcctacacg cctccgccat gacgagccca taaacgtttg ggcaacagat ctttacatcg
       61 ttgaataaca aagctcagaa aaggacattc ctcacatgat cagtgattgg gttgagctca
      121 atatgacacc cggcatcggt cctcgcgccg ctgccaaaat cctcgagcgc ttcggttcgg
      181 ccgagtccgt ttacaacgca acccgaaccg aactcgaaca gttgcgcctc gcaccagaag
      241 cgattgacag cattatttcc cgcgtcttgc gctccaccgc ggaagccgaa atcgcagcgg
      301 tcagaaaact cggcggtgac attctcctgt tggacgacgg ggtttatccc tcatccctac
      361 gcgagattta cgacccgcca attgttctct atgtaaaagg cgcctgggcg gaatgtctgg
      421 atcagccgtg catcggcgtg gtagggtctc gtaagtgctc gacctacggg cagaacgccg
      481 cgaacatgtt ggcgcgcgac ctggcgcagc gagaattgac cgtagtttcg ggctttgcaa
      541 ggggaattga cgccgcggcg caccggggag cgctcgaagc cggcgggcgt acggtggccg
      601 tcctcggaac gggaatcgac gaggtttacc ctcgcgatca caagaagtta gcggaagaaa
      661 tactggccag cggcggcgcg ctcgtgagcc agttcccact gggtacgccg ccggtctcgg
      721 aaaactttcc gtaccggaac cgcatcatta gcggactgag tttaggaata gtagtagtgg
      781 aagcagccga gaattcgggc tctttgataa ctgcgcgatt ggcgatggaa cagaatcggg
      841 aagtttatgc agtgcccggg aatatcactt cccgaaactc tttcggcacc aattacctga
      901 tcaaaggcgc aggcgcaaag ctggtacagc aatggcagga catcgccgcg gaactgccgc
      961 aggatctcgc cgcgaggttg ttgccgccgc cggtgacgcg ttcgcagtcg tcgctggccg
     1021 agaagctggc gtttgtgccg gaaggattgt cgcaaagcga gacttccgtg tttcgtttgc
     1081 tgagtcacga cagtccggcg cacgtcgact ggctggtcga taagagcaaa cttccgattt
     1141 cggatttgac ggcggcattg ttggcgttgg aaatgcgaga gctggtgcgc gcactgccgg
     1201 gaaagtgttt tgtgagaaaa ctgtaaatgt caaaaaattt agtaatagtt gaatcgcctg
     1261 caaaggcaaa aacgattaac aagtatttgg gaaaggacta cctcgttaag gcctcgatag
     1321 gccacatcaa agatctgcct tctaaaggac tgggagtaga cgtcgaacac aacttcgaac
     1381 ccacctacga actgattccc gattcgaaga aacgcaacaa caagaagatc gtcgcggaac
     1441 tgaagaaggc cgcgaaagaa gcagacgcga tctacctcgc ggctgacccc gatcgcgagg
     1501 gcgaagcgat ctgccagcat ctcgcggaag agatcgtgcc gaagcgtccg gcgaagccga
     1561 cgtatcgcgt gatgttcaac gagatcacga aacgcgcggt caatgcggcg ttcgaagatc
     1621 cgcggcagat cgacgggaac ctcgtcgaag cgcaacaggc gcggcgtgtg ctcgatcggc
     1681 ttgtgggtta caaagtctcg ccgttgctct gccgcacgat cggcggacga ttgagcgccg
     1741 gacgcgtgca gtcagttgcg ctgcgcatgg tcgtcgagcg cgaacgcgag atcgagcagt
     1801 ttgtcaaaac cgaatattgg accatcggcg cgaatctcag tgcgaagctg ccgccggcgt
     1861 ttgaagcgcg gctgttcaaa gtcggcgagc aaacagtcaa gacgagcggt ttcgatcagg
     1921 aactcaagaa gaacgaaatc ctgatcaacg atcaggcgct ggcagacagg ctcgtcgacg
     1981 aagcgcagca gc
//
LOCUS       DASWTX010000333         2915 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_241886, whole genome shotgun sequence.
ACCESSION   DASWTX010000333 DASWTX010000000
VERSION     DASWTX010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2915)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2915)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2915
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_241886"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(188..943)
                     /locus_tag="VGD38_05175"
     CDS             complement(188..943)
                     /locus_tag="VGD38_05175"
                     /inference="COORDINATES: protein motif:HMM:NF013106.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HEY0727441.1"
                     /translation="MIRRIFRWSFRIVLGIIVGLILYEAVLFVRVYWLRTHNPSSTSL
                     IDTRANESRAKGQQPRREQVWVPLEKISANLQRAVLAGEDTNFTTHGGFDYEAIQKAY
                     EQAQREAAREAKREGEDDDWLPNLPEFKRGGSTISQQLAKNLYLSSQRSFIRKGQEAV
                     VTIMLERLLTKRRILEIYLNVIEWGDGVYGAEAAAQKYFRKPASALSANEAAYLSAMI
                     PNPRTVFNPQVNPRRVARRQRIILRGMPYVKLP"
     gene            complement(947..1870)
                     /locus_tag="VGD38_05180"
     CDS             complement(947..1870)
                     /locus_tag="VGD38_05180"
                     /inference="COORDINATES: protein motif:HMM:NF013046.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase"
                     /protein_id="HEY0727442.1"
                     /translation="MQVFYTPRYYADIGNGHIFPIRKFELVRDRLLAEGTLHTSELLE
                     PQPATVEQVRLVHTEDYISRLCEGTLTAKELRRLGLPWSESLVRRSFYATGGTIAAAH
                     AALDEGYASNLAGGTHHSFADRGEGFCVFNDVAVAIRVLRNAGLISHAAIVDCDVHQG
                     NGTATIFAGDENTFTFSIHGANNYPLFKARSSLDVELADGTTDREYLDCLVSHFPAVF
                     ASEPEIVFYLAGADPYEGDKLGRLGLTIDGLRQRDECVLRECYEREVPVVTVMSGGYG
                     KDINDTVEIHCNTIRAVKDVFELQIAARRLA"
     gene            complement(1931..2233)
                     /locus_tag="VGD38_05185"
     CDS             complement(1931..2233)
                     /locus_tag="VGD38_05185"
                     /inference="COORDINATES: protein motif:HMM:NF013540.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY0727443.1"
                     /translation="MGNPRPKPLRLADKLLQIRKGLDLSQTQMLLRMGLEETMHYGRI
                     SEYEQGKREPSLMTLLAYARAASVHLEDIVDDDLDLPRRLPGTVNYRGLSRKTRRK"
BASE COUNT          572 a          790 c          875 g          678 t
ORIGIN      
        1 gaacgttcgt tcggttgaga gagctgctcg cctctaacgc tgagctaaat cgccgtcttg
       61 acgatcttga gcaaaactac gacacgaagt ttagagtcgt ctttgacgct attcgtactt
      121 tgctcaacgc ccctgataag aaaacccgca aaatcgggtt tcgtccgaag acttgaacga
      181 gtggggttta cggcagcttc acgtagggca tgccgcggag gatgatgcgc tggcggcgcg
      241 cgacgcggcg tgggttgacc tgggggttga agactgtccg ggggttcggg atcatggcgg
      301 agaggtaggc cgcttcgttg gcgctgaggg ctgaggccgg tttgcggaag tatttttgtg
      361 ctgcagcttc tgcgccgtaa acgccgtcgc cccactcgat cacgttcaga tagatttcga
      421 gaatgcggcg tttagtcaac agacgctcca gcatgatcgt caccacggct tcctggcctt
      481 tgcggatgaa cgatcgctgt gacgagagat agaggttctt tgccaattgc tgcgagattg
      541 tcgaaccgcc gcgtttgaac tcgggcaggt tcggaagcca gtcgtcgtct tcgccttcgc
      601 gttttgcttc ccgcgcggct tcgcgttgcg cctgctcgta tgctttctga atcgcttcgt
      661 agtcgaaacc gccgtgagtg gtgaagtttg tgtcttcacc cgcgagcacc gctcgttgca
      721 ggtttgccga gatcttttcc agcggcaccc acacctgttc gcgccgcggt tgctggcctt
      781 tcgcccgtga ttcgttggcg cgcgtgtcga tcagcgatgt tgacgaagga ttatgggtgc
      841 gtaaccaata gacgcgtacg aagagcacag cctcgtagag gatcaggccc acgatgatgc
      901 ccagcactat tcggaatgac cagcgaaaga ttctgcgtat catcgttcag gcgagtcgcc
      961 gcgccgcgat ttgcagttcg aagacgtctt tgactgctcg gatcgtgttg cagtgaattt
     1021 cgaccgtgtc gttgatgtct ttgccgtaac cgcccgacat aaccgtgacg accggcactt
     1081 cgcgttcgta acactcgcgc aagacgcatt catctcgctg ccgcaggcca tcaatcgtta
     1141 gtcccaaccg gcccagcttg tcaccttcat aaggatccgc gccggcgaga tagaaaacga
     1201 tctcgggttc tgaagcgaac acggcaggga agtgactgac caggcaatca aggtattcgc
     1261 gatcggttgt gccgtcggcc aactcgacgt caagactcga acgcgccttg aagagcggat
     1321 agttgtttgc tccgtgaatc gaaaaggtga acgtgttttc gtcgccggcg aagatggttg
     1381 cggtgccgtt gccctggtga acgtcgcaat cgacgatcgc tgcgtggcta atcaggcctg
     1441 cgtttcgcaa gacacgaatc gcgacggcga cgtcgttgaa cacgcagaaa ccctcgccgc
     1501 gatcggcaaa cgaatggtgc gtgccgcccg cgaggttcga agcgtaacct tcgtcgagtg
     1561 ctgcgtgcgc tgccgcgatc gttccgccag tcgcgtaaaa cgagcggcgc acgagcgatt
     1621 cagaccacgg caaacccagc cggcgcagtt cctttgccgt caacgttcct tcgcaaagtc
     1681 gcgaaatgta atcttccgta tgaacgagcc ggacctgttc gactgtagcg ggctgcggct
     1741 cgagcagttc agacgtgtgc agcgtgcctt cggccagcag ccggtcgcgc acgagctcaa
     1801 acttgcgaat gggaaagatg tgaccgttgc cgatgtcggc gtagtaacga ggtgtgtaga
     1861 aaacttgcat gcgctgcgga cgaatattag cgcaaagcaa ctatctgtgt cgtctgtgtt
     1921 tatctgtggc ttattttcga cgtgttttgc gcgacagtcc gcggtagtta acggtgccgg
     1981 ggagtctgcg cggaaggtcg agatcgtcgt cgacgatgtc ttcgaggtga acactcgcgg
     2041 cgcgcgcgta ggcgagcagc gtcatcaggc tcggctcgcg tttgccttgc tcgtattccg
     2101 agatgcggcc gtagtgcatg gtttcttcga gtcccatgcg caagagcatc tgcgtttgcg
     2161 acaaatcgag acctttacgg atctggagca gcttgtctgc gagccgcaac ggcttcggac
     2221 gcgggttacc catcagctgc ggcctccctt tgagaggaga ctcagcggct ggagggcgat
     2281 cttccgcgcg tcgatttccg cgcttgcgtg gggactgggc ttggcccata cggtcctgct
     2341 gcctgactgg acctgacaaa cgactctctt gcatctatgc gcagttggga gtaatatgcc
     2401 ttcgctgttg tttttcgccg tgagtatgaa cctttcatgc tcaacggcga tgctcatcac
     2461 tcgttagtgg gttgagccgc gcacatggcc gttgcttaat tgtcaaagac ggaccatcgt
     2521 aaaacgacag accccctgcc gtaaacagaa aaatacattt tggttggccc tgtgaagggg
     2581 gccacgagtc cgcgagaggc ggaaaggccc agatccgctc cgcggactca ggtgttttgc
     2641 cgcacttccg ctttaggtcg ggtattagaa gcccaccaac ttcgttggtg ggactttcgg
     2701 gcctagtctg gcaaggtgta ggcagtgtat tagaagccca ccaacttcgt tggtgggact
     2761 ttctagcctg gtctaccaag gtataggcag agtattagga acccaccaac ttcgttggtg
     2821 gtacttcgga ctcagcttac taagcttagg cggcgtttag gcggcctgtc agaaccccac
     2881 caacgaagtt ggtggtactt tcagatccaa cctac
//
LOCUS       DASWTX010000334         3156 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_286616, whole genome shotgun sequence.
ACCESSION   DASWTX010000334 DASWTX010000000
VERSION     DASWTX010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3156
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286616"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..297
                     /locus_tag="VGD38_05190"
     CDS             <1..297
                     /locus_tag="VGD38_05190"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEY0727444.1"
                     /translation="QLAQLEVIADQADAVAGPVLIMGDFNTLSREKCLETRSFLESRG
                     YTTPIPTGTATWRGAGLRMHADWIFGRDLNFVRWGVARPLHVSDHWPIWAEVEL"
     gene            297..1091
                     /locus_tag="VGD38_05195"
     CDS             297..1091
                     /locus_tag="VGD38_05195"
                     /inference="COORDINATES: protein motif:HMM:NF012797.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEY0727445.1"
                     /translation="MHITSRDNSLLRHARAVRDGKVDDQIFIEGLRLSAEALRSKLDI
                     EAVIASEELIVKEKAAATFTALSQAAKRVGTVSEKLLESISYTKTPQGIVVLAQRPEA
                     SEQRLDESLSKDTLLVVLHQLNNPVNVGAILRTAEAAGATGIITTKNTSDPFSPKSLR
                     GAMGSAFRLPIWRNTDFNTAVTWCRERKISLIGTAATAKMRHMDWDWKRPSALVLGPE
                     STGLSDEELRATDQTVSIPMQGEVESLNVSVAAGILLYEAARQRLS"
     gene            complement(1083..1325)
                     /locus_tag="VGD38_05200"
     CDS             complement(1083..1325)
                     /locus_tag="VGD38_05200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727446.1"
                     /translation="MQKLFQVTVWVCVAVVSIALLGVLFVAAYSVLPLPMVSHSDGIG
                     AVAGGVSERWLRLAFLLAILVSSGFLYWRSRARKSR"
     gene            complement(1335..1970)
                     /gene="can"
                     /locus_tag="VGD38_05205"
     CDS             complement(1335..1970)
                     /gene="can"
                     /locus_tag="VGD38_05205"
                     /inference="COORDINATES: protein motif:HMM:NF007756.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004089 - carbonate dehydratase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0015976 - carbon utilization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbonate dehydratase"
                     /protein_id="HEY0727447.1"
                     /translation="MKDLKRLLEQNKAWAEGIKASDPGFFPTLAKQQTPKFLWIGCSD
                     SRVPATQLAGMVPGEMFVHRNVANVVVHTDFNCLSVMQYAVDVLKVEHIIVCGHHGCG
                     GVRAAMNNLSLGLIDNWLRHVQDVMHVHDKELAQIEDESARVDRLCELNVMEQVVNVS
                     RTTIVQNAWQRDQELVVHGWIYGLHDGLLRDLGITVDSAAGLDAAYQSALK"
     gene            complement(2036..>3156)
                     /locus_tag="VGD38_05210"
     CDS             complement(2036..>3156)
                     /locus_tag="VGD38_05210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727448.1"
                     /translation="EAILFPDTRTTFGVVEMTTGCGRRCKFCVPDLNPQIDLPKDKIM
                     DAVRANVRNGNKQISLATEDMFIWGQVHTDTPFYFPNREALVDLYSDIVNTPGVEQHV
                     LSHCTIAPAVVDPLLIKQLSDVLLPKSPIHFPYLSSHPEKKALAPLIGLETGSVRMAK
                     QIMSSKGVPFSIEDWPSVVLEGLRVLNENNWFPVMTLIVGNPGETDEDVMETIDLVYE
                     MERRGLFAFLVPSIFTPLHDTRMEKEKGVTQTRQLTPLQWQLMMKCWKLNLRPGQYSW
                     WGPMAWRVGSIGMWLYKLRRLNGPNFTWPLLMFSGAIPEKTMQRMGKIYRGKPLKVKT
                     RRELIASLKPRDWQYLRADNGDLPLQYVPQTTEMAATA"
BASE COUNT          697 a          961 c          885 g          613 t
ORIGIN      
        1 caactggccc aactcgaagt gatcgcggat caggcggatg cagtcgccgg tccggtactc
       61 atcatgggcg acttcaacac gttgtcgcga gaaaagtgtc tcgagacacg aagctttctc
      121 gaatcgcgcg gttacacgac gccgatccca accggcacgg cgacgtggcg cggcgcgggt
      181 ctgcgcatgc atgccgactg gatcttcggg cgcgatctga acttcgtgcg ttggggcgtc
      241 gcgcgtccat tgcacgtttc cgatcactgg cccatctggg cggaagtcga actctgatgc
      301 acatcaccag ccgcgacaat tccctgctcc gccacgcgcg cgccgtgcgc gacggcaaag
      361 tcgacgacca gatttttatc gaaggattac ggctgagcgc tgaggcattg cgctcgaaac
      421 tcgacatcga agccgtgatc gcgtcagaag agttgattgt gaaagagaaa gccgccgcaa
      481 ctttcactgc actctcgcaa gcagcaaaac gcgtcggcac ggtcagcgag aaactgctcg
      541 agtcgatctc ttacacaaaa acaccgcagg gcatcgtcgt cctcgctcaa cgtcctgaag
      601 cttcagagca gcgtctcgac gaaagtttaa gcaaagacac gctgctcgta gtgctgcacc
      661 agctcaacaa tccggtgaac gtcggcgcca ttctgcgaac cgccgaagcg gccggcgcga
      721 cgggcatcat cacgacgaaa aacacgagcg atccgttttc accaaagtct ctgcgcggcg
      781 cgatgggctc cgcgttccgt ttgccaatct ggagaaacac agacttcaac accgccgtaa
      841 cgtggtgccg cgaaagaaag atcagcttga ttggcacagc ggctaccgca aagatgcggc
      901 acatggattg ggactggaag cgtccgagcg cactcgtgct tggaccagag tcaacaggcc
      961 ttagcgatga agagttgcgg gctacggatc aaacagtgag tattccgatg cagggcgaag
     1021 ttgagagcct gaatgtgtca gtcgcggcgg gaattctttt gtacgaagcg gcgcggcagc
     1081 gtctatcgtg acttccgcgc gcgcgagcgc cagtaaagga agccgctgct aacgaggatg
     1141 gcgagaagaa acgcgagtct taaccacctc tcggaaacgc ctcctgcaac cgcaccgatc
     1201 ccgtcgctgt gcgaaaccat cggcagcggc aaaaccgaat acgctgctac aaacagcacg
     1261 ccgagcagcg cgatggaaac caccgccaca cacacccaaa cggtaacctg gaagagcttc
     1321 tgcataatca acaactattt gagcgcgctt tgatacgccg cgtccagccc ggcggcgctg
     1381 tcaaccgtga tgccgagatc gcgcagcagc ccgtcgtgca aaccgtagat ccaaccatgc
     1441 accacgagct cctgatcgcg ctgccaggcg ttctgcacga tcgtcgtgcg actgacgttc
     1501 accacctgct ccatgacatt cagttcacag agccggtcca cgcgcgctga ctcatcctcg
     1561 atctgcgcca actctttatc atgaacgtgc atcacgtcct gaacgtgacg cagccagttg
     1621 tcgatcagcc cgagcgaaag attgttcatc gccgccctga caccaccgca gccgtgatgc
     1681 ccgcagacga tgatgtgctc aaccttcaac acgtcaacgg catactgcat caccgacaaa
     1741 caattgaaat ccgtgtggac cacgacgttc gcgacattgc gatgcacaaa catctcgccc
     1801 ggaaccattc cggccaactg cgtcgccggc actcggctat cggaacaacc gatccaaaga
     1861 aacttcggcg tctgttgttt cgcgagtgtc ggaaagaacc cgggatcgct cgccttgatt
     1921 ccctcagccc acgccttgtt ctgctctaaa agccgcttga gatccttcat agttgagcca
     1981 cagattaacg ccgaagacac ggacaaacaa cttccgtttt gaggcagcga ttcccttaag
     2041 ctgtcgcggc catctctgta gtctgcggca catattggag gggaaggtcg ccgttgtcgg
     2101 cgcgaaggta ctgccagtct cgcggcttga gcgaggcgat cagctcgcgg cgggtcttaa
     2161 ctttcagagg tttgccgcgg tagatcttgc ccatgcgttg catggtcttt tcgggaatcg
     2221 cgcccgagaa catcagcagt ggccacgtga agtttggacc atttagccgg cgcagcttgt
     2281 aaagccacat gccgatcgag cccacacgcc acgccatcgg tccccaccaa ctgtactggc
     2341 cgggccgcag gttcaacttc cagcacttca tcatcaactg ccattgcagc ggcgtgagct
     2401 ggcgcgtttg cgtgacgcct ttttccttct ccatgcgcgt gtcgtgcagc ggcgtgaaga
     2461 tcgacggaac gaggaacgcg aacaatccgc ggcgttccat ctcgtaaacg agatcgatcg
     2521 tctccatcac gtcttcgtcc gtctcgccgg ggttgccgac gatgagcgtc atcaccggga
     2581 accagttgtt ctcgttcagc acgcgcaatc cttcgagcac gacgctgggc caatcctcga
     2641 tcgaaaacgg cacgcccttg ctcgacatga tttgcttcgc catccggacg gatccggttt
     2701 cgaggccgat cagcggcgcg agtgctttct tctccggatg actgctcagg tacggaaaat
     2761 ggatcgggct cttcggtaac aaaacgtccg agagctgttt gatcagcaac ggatcgacaa
     2821 cggcgggcgc gatcgtgcag tgactcaaca catgctgctc gacgccgggc gtgttcacga
     2881 tgtctgaata aagatcgacg agggcttcgc gattcgggaa gtaaaacggc gtgtccgtgt
     2941 gcacctggcc ccagatgaac atgtcttccg tagccagcga gatctgcttg ttgccgttgc
     3001 gcacgttcgc gcgcacggcg tccatgatct tgtccttcgg cagatcgatc tgcgggttga
     3061 gatcggggac gcagaacttg caacgacggc cgcagccggt ggtcatctcg acaacgccaa
     3121 acgtggtgcg cgtgtcggga aacaggatcg cttcgc
//
LOCUS       DASWTX010000335         5785 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_27075, whole genome shotgun sequence.
ACCESSION   DASWTX010000335 DASWTX010000000
VERSION     DASWTX010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5785
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27075"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..685)
                     /locus_tag="VGD38_05215"
     CDS             complement(<1..685)
                     /locus_tag="VGD38_05215"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY0727449.1"
                     /translation="MTEFDVIVIGAGINGAGIGRDAAMRGLRVLLVDKGDVGGGTSAG
                     STRLIHGGLRYLEHFEFGLVRESLRERETLLRIAPHLVRPLEMTIPIYQESQRGWTTV
                     RAGMIAYELLAWGKSLPRYRMQSVRETLRRMPGLRAEGLIGSAVYFDAQVEFAERLVV
                     ENVLAAIEQGATVLTHTRVGTLLSEDGRVRGVQLGRDFGEVALAQVVINAAGPWVDQV
                     IEQKIGGTQT"
     gene            917..3139
                     /locus_tag="VGD38_05220"
     CDS             917..3139
                     /locus_tag="VGD38_05220"
                     /inference="COORDINATES: protein motif:HMM:NF042645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6600 domain-containing protein"
                     /protein_id="HEY0727450.1"
                     /translation="MKVSRLNARLLVLLLTLLSITTVARATQEDTDEPDDYDVKDRVV
                     RISLITGEVSLRRRANQDWERARLNYPLVEGDTVSTDKDSRMEIQIDARNFVRLAPGT
                     ALRIVTLRDEGVALSVIEGTAIVRLVKFDRSKEYFELDAPRTTLAAEKPGLYRIDVPR
                     DGRVRLTVRDGGSARIYSDTSGFSLRDGRSAELVVAGENAGDWEFLAATSDAFDAFVG
                     DRERFLAQRLRYDAEYYDEYAWGAEELAAYGEWTFTDDFGWIWRPHPGTISAYADWAP
                     YRYGHWTWCPPYGWTWVGYEPWGWAPYHYGRWVFHNNTWAWVPRSKFNRTRRSWWRPA
                     LVAFVNLNISIGSSNDICWYPLGYYDRDPHSRRYRHRDRNDRRPGYGGGGGGGRPPYT
                     QPGGGGGRPPYTPGGGTTAGGGGGGAGQPPSRDGREHKSWRGVTRVPRRDFGDGTQPG
                     QPVEERTARRVIESPPDLDDLPRRIGPGRTEGRQVQLPTAPTGAAERTPGVALDEDLR
                     RQRVFRGREPRTADPAQATPTQQTTPPQTVTTPAPGAVERPETRTEDRPARGIERRPQ
                     RDPERPRIETRSEPRIENPIEPRRDPQPEPRSESPRPAPRVETPRPEPPPRVESPRSE
                     PRPEPRTERPEPRTERPEPRTERPEPRTERPEPRTESPRSDPPPRNDPPPRADPPPRV
                     ESRPEPRSEPPRSQSPPPRNDPPPRNDPPPRNDPPARVESPRSESPRPESPKKPDNKE
                     "
     gene            complement(3154..3603)
                     /locus_tag="VGD38_05225"
     CDS             complement(3154..3603)
                     /locus_tag="VGD38_05225"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY0727451.1"
                     /translation="MIRRATPEEASTLTTIALEAKRHWGYPEHWIKHWESDLTISADF
                     VRDHHVYVAEADGEIRGFYALCVSGDRAELEHMWVTPASIGTGIGKELFLDAMERAAA
                     LEVRDVEIVADPNAAGFYERMGATQIGEVESPIDGQSRKIPRLKIEP"
     gene            complement(3613..3846)
                     /locus_tag="VGD38_05230"
     CDS             complement(3613..3846)
                     /locus_tag="VGD38_05230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727452.1"
                     /translation="MSENETAIGQGAAPANEPAPEANTEEITYHAVEKDGVVTAIWEM
                     QGRKHLRTIDPRSRQGQDILRLYTTEHHDEAPQ"
     gene            complement(3907..5040)
                     /locus_tag="VGD38_05235"
     CDS             complement(3907..5040)
                     /locus_tag="VGD38_05235"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY0727453.1"
                     /translation="MPEIIEIEPALPVPVRMDADERFTGRGVTVAFLDSGFYAHSDLT
                     EPINRIVAYHNIFSPTDDISSLQTHDVASWHGMMTSVVAAGNGFLSDGLYRSIAPEAN
                     VVLVKIGKTGRIQESNIETGLRWVLANKDKYSIRIVNISAGGDFEQPYLDNSLCQLVE
                     QAVKAGLTVVCAVGNAGLAPGHPVLPPASSPAAISVGGLDDQNSLDRARRGMYRSSYG
                     PTVDGLQKPEVIAPGIWVAGPILPHTPTAAEAHLYAELDAAEDDQLKTILLKHAGIDK
                     QLDEARELTVPLLRQLITIKLREGNVINQHYKFVDGTSFASPIVASIAACMLQANPKL
                     TPQQIKRILIDTAERVPEIEVERQGWGVVVPRKAVEVALRWRG"
     gene            5073..5663
                     /locus_tag="VGD38_05240"
     CDS             5073..5663
                     /locus_tag="VGD38_05240"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HEY0727454.1"
                     /translation="MKTRNVSILLALVFVIAGAVFASEVPAPPAIGSTIEEFTLPDVN
                     GTERSLKSLAGKNGTVLLFISVQCPVSNAYNERMEKLAADYKAKGIAVIGINSNVAED
                     AAAAKSHAAENKLSFPILKDAGNKIADKLGASVTPEAYFLDAGNKLVYHGRIDNSRNA
                     AQVESSDLRNALDASLSGKPVEKSEAKAFGCSIKRG"
BASE COUNT         1243 a         1845 c         1580 g         1117 t
ORIGIN      
        1 cggtctgcgt acctccgatc ttctgctcga tcacttggtc aacccacggc ccagcagcgt
       61 tgatcacaac ctgcgccaac gccacttccc caaaatccct tcctaactgc acccctcgca
      121 cgcgcccgtc ttcgctcaac agcgtcccca cgcgcgtatg cgtcaacaca gtcgcgccct
      181 gttcgatcgc agcgagcacg ttctccacaa ctaaccgctc agcaaactca acctgcgcgt
      241 caaaataaac cgcagacccg atcaacccct cagccctcaa ccccggcatt ctccgcagcg
      301 tctcccgaac cgactgcatc cgataccgcg gcagcgactt cccccacgcc aacaactcgt
      361 acgcaatcat tcccgcccga accgtcgtcc accctcgctg actctcctga tagatcggaa
      421 tcgtcatctc cagcggccga accaagtgcg gcgcgatccg caacagcgtc tcacgctcgc
      481 gcaacgactc ccgcaccaac ccaaactcaa agtgctccaa ataccgcaac ccgccatgaa
      541 tgagccgcgt cgatccggca ctcgtcccgc caccaacatc acccttatca accagcaaca
      601 ctctcaaccc gcgcatcgcc gcatcgcgcc caatgcccgc gccgttaatc cccgccccga
      661 tcacaatcac atcaaactct gtcataccat ttcgtgttag caacgcacgg tctaagacat
      721 ctcaacagat cgcacctaca agcacaatca aaagccccgt ttgagagttc tcaaattacc
      781 aaaccacacc caaaacttcg cgcttgagag atctcaattc tcacgtgggc ccacgttcta
      841 agcctttgcg ggcatacaca ttgccgcgtt ttcgccgcag ccaacagggt caaccatcaa
      901 accaaggagc aagaccatga aagtctcccg actgaacgca agacttctcg ttctattact
      961 cacccttctc tcaatcacca ccgtcgcccg cgccactcaa gaagatacgg acgaacccga
     1021 cgattacgat gttaaagatc gcgtcgtccg catcagtctg atcaccgggg aggtgagtct
     1081 caggcgacgc gccaaccagg attgggaacg cgcccgcctg aactatccgc tcgtcgaggg
     1141 cgacaccgtt tccaccgaca aagacagccg gatggaaata cagatcgacg cgcgcaactt
     1201 cgtgcgcctc gcgccgggca cggcgttgcg catcgtgacg ctgcgcgacg aaggcgtcgc
     1261 gctgagtgtt atcgaaggca ccgcgatcgt tcggctcgtc aagttcgatc gtagcaaaga
     1321 gtattttgaa ctagacgcgc cgcggaccac gctggccgcc gagaaaccgg ggctctaccg
     1381 gatcgacgtg ccgcgtgatg gccgcgtgcg tctgaccgtg cgcgatggcg ggagcgcacg
     1441 gatttattcc gacacgtcgg ggttttcgtt gcgtgacggc cgctcggcgg agttggtggt
     1501 ggcgggcgag aacgccggcg attgggagtt tctcgccgcc acttctgacg cgtttgacgc
     1561 ttttgtgggc gatcgcgaac gcttcctcgc acaacggctt cgttacgacg ccgagtatta
     1621 cgacgagtat gcgtggggcg cggaggagct tgctgcttat ggcgagtgga ccttcacgga
     1681 tgacttcggc tggatctggc ggccgcatcc gggaacgatc agcgcctatg ctgattgggc
     1741 gccgtatcgc tacggtcatt ggacgtggtg tccgccgtac ggctggacgt gggttggtta
     1801 cgagccgtgg gggtgggcgc cttatcacta cgggcgttgg gtgtttcaca acaacacgtg
     1861 ggcgtgggtg ccgcgcagca agtttaatcg cacgaggcga agttggtggc ggccggcgct
     1921 cgttgcgttt gtgaatctca acatctcgat tggcagcagc aacgatattt gttggtatcc
     1981 gctcgggtac tacgatcgcg atccgcactc gcgccgttat cgtcatcggg atcgtaatga
     2041 tcgccggcct ggttatggtg gaggcggtgg cggaggacgt ccgccgtaca cgcagcccgg
     2101 tggtggcgga ggtcgtccgc cgtatacgcc cggcggtgga acaactgcgg gtggcggcgg
     2161 tggtggcgct ggacagccgc cttcgcgaga tggtcgtgaa cacaaatcct ggcgtggtgt
     2221 gacgcgagtg ccgcgcaggg attttggtga tgggactcaa ccgggacagc cggttgagga
     2281 acgaacggcg cgacgcgtga ttgagtcgcc gccggacctt gatgatttgc cgcggcgcat
     2341 tggaccaggt cgtactgagg gacgtcaggt tcagttgccg acagctccga ccggtgctgc
     2401 tgagcgcacg cccggagttg cgctcgacga agacctgcgc cggcagcgtg tcttccgcgg
     2461 ccgcgaacct cgcactgccg atccggcgca agcaacccca acgcaacaaa caactccgcc
     2521 gcaaacggtg actactccgg caccgggagc agtcgaacgc cctgaaacgc gcaccgagga
     2581 cagaccggct agaggaatcg aacgacgccc gcaacgcgac cctgagcggc cgagaattga
     2641 aacccgatcc gagccacgga ttgaaaaccc aatcgaaccg cgcagggacc cgcaacccga
     2701 acctcgttcc gaatctccac gccctgcgcc acgagtagag acgccacgtc cggagcctcc
     2761 gccgcgtgta gagtctccac gttcagaacc tcgacccgaa cctcgtacgg agcgacccga
     2821 accccgcacg gagcgacccg aaccccgcac ggagcgacct gaaccccgta ccgaacgacc
     2881 tgaaccccgt acggagtcac cacgctccga tccacctcca cggaacgatc cgcctccacg
     2941 cgccgatccc ccaccacggg ttgagtcacg acccgaaccc cgttcggaac caccacgttc
     3001 ccaatcacca ccaccgcgca acgatccacc gccgcgcaac gatccgccac cgcgcaacga
     3061 tccacccgcg cgcgtggaat cgccgcggtc agagtctccg cgtccggagt cgccaaagaa
     3121 accggacaac aaggagtaaa tccgtggccg aaactatggt tcgattttca ggcgaggtat
     3181 tttgcgtgac tgaccatcga tcggtgactc aacctcaccg atctgcgtag cgcccatccg
     3241 ctcataaaac cctgccgcat tcgggtccgc aacaatctcc acatcgcgga cctcgagtgc
     3301 ggcagctctt tccatcgcat cgagaaacaa ctccttccca atgccggtcc cgatcgacgc
     3361 cggcgtcacc cacatgtgct cgagctcagc cctgtcaccg ctgacacaca acgcataaaa
     3421 cccgcgtatc tcaccgtcag cttcagcaac ataaacgtga tggtcgcgaa cgaaatcagc
     3481 agagatggtg aggtctgatt cccagtgttt tatccagtgt tcgggatagc cccaatggcg
     3541 cttcgcctca agcgcgatcg tagtcagcgt tgaggcctct tcaggtgttg cgcgcctgat
     3601 catagcagtt ggctactgcg gagcttcgtc gtgatgctcg gtggtgtaaa gtcgaaggat
     3661 gtcctggccc tgtcgcgagc gtgggtcgat cgtgcgcaga tgcttgcggc cctgcatttc
     3721 ccaaatcgca gtaacaactc catctttctc tacagcgtga taagtgatct cttcggtgtt
     3781 tgcttcaggc gcgggctcgt tcgcgggggc cgcgccctgc cctattgcgg tttcgttctc
     3841 agacatacta actcagcaac tctccaatct tttgtgggtg tttttgggtg tcgcgattgt
     3901 tgcacatcaa ccacgccagc gcaacgctac ctcgaccgct ttgcgcggca cgaccacgcc
     3961 ccaaccctgc cgctcgactt cgatctcggg cacacgctcg gcggtgtcga tcaaaatgcg
     4021 cttgatctgt tgcggcgtga gctttggatt tgcttgcaac atgcacgcgg caatcgacgc
     4081 gacgatgggt gaagcgaagg aagttccgtc aacgaatttg tagtgctgat tgatcacgtt
     4141 gccttcgcga agtttgatcg tgatgagctg gcgcaacagc gggaccgtca gctcgcgcgc
     4201 ttcgtcgagt tgtttgtcga tgccggcgtg cttgagaaga atggttttca actgatcgtc
     4261 ttcggcagcg tcgagctcgg cataaagatg cgcctcggcg gcggtaggcg tgtgcggcag
     4321 gattggacca gcaacccaga tcccgggcgc gatcacttcc ggcttttgca aaccgtcgac
     4381 cgttggtcca tacgacgacc ggtacatacc gcgccgcgcg cgatcgaggg agttctgatc
     4441 gtcgagtccg ccgacagaga tcgctgccgg agaactcgcc ggcggcaaaa ccggatgtcc
     4501 cggcgcgagt cccgcattgc caaccgcgca aacaaccgtc aaaccggcct tcactgcctg
     4561 ttcaactaac tgacacagcg aattatcgag atacggctgt tcaaaatcac cgcccgccga
     4621 aatattgacg atgcgaatcg aatatttgtc tttgttcgcg agcacccaac gcagcccggt
     4681 ttcgatgttg ctttcctgta tgcggccggt ctttccgatc ttcaccagca ccacgttcgc
     4741 ttccggcgcg atgctgcgat agaggccgtc cgacagaaaa ccatttcccg ccgcgacgac
     4801 cgaagtcatc atgccgtgcc agctcgcgac gtcgtgtgtt tgcagcgaag aaatgtcgtc
     4861 tgttggagaa aaaatattat ggtaggcaac gatcctattg attggttccg tcagatcact
     4921 gtgcgcataa aagcctgaat cgagaaaggc cacggtcacg ccgcgaccgg tgaaacgttc
     4981 atcggcatcc atccgcacgg gaactggcag cgctggctcg atttcgataa tctctggcat
     5041 aatctctggt cgcttcaaag gagacataat aaatgaagac gagaaatgta tcgatcctgc
     5101 tggctctagt gtttgtaatt gcaggggcgg ttttcgcgag tgaagtcccc gcgccgcccg
     5161 cgattggctc cacgatcgag gagttcacgc tgccggacgt caacggcacg gaacgttcac
     5221 tcaaatctct ggcaggaaag aacggcacgg tgctgctctt tatctccgtt cagtgtcctg
     5281 tttccaacgc ctataacgag cgcatggaaa aattggctgc ggattacaaa gccaagggca
     5341 tcgccgtcat cggcattaat tccaacgttg ctgaagatgc agccgccgct aaatcgcacg
     5401 ccgctgaaaa caagctcagc ttcccgattc tgaaagatgc cggtaacaag attgccgaca
     5461 aacttggtgc cagcgtcacg ccggaagcct atttcctcga cgccggcaac aaactcgtct
     5521 atcacggacg tatcgacaac tcccgcaacg cagcgcaagt agaatcaagc gatctgcgca
     5581 atgcactcga tgcatcactc agcggcaagc cggttgaaaa atcggaagcc aaggcattcg
     5641 gttgcagcat caagcggggc taagcaatgc gtcgttttca agcctttgta ttgattgctt
     5701 tgtgcgtgct gatggccagt ctcgcggcgc ctgctcaaaa gagaaacggc gccgcgaaaa
     5761 aaccggccga gaagacgccg aaagt
//
LOCUS       DASWTX010000336         6618 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_308987, whole genome shotgun sequence.
ACCESSION   DASWTX010000336 DASWTX010000000
VERSION     DASWTX010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6618
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308987"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..882)
                     /locus_tag="VGD38_05245"
     CDS             complement(<1..882)
                     /locus_tag="VGD38_05245"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY0727455.1"
                     /translation="MLQPETILQGRYRIIRQLGQGGMGAVYEALDQRLDTTVALKETL
                     FADERLRKQFEREARLLARLHHPALPRVSDHFSEGDGQFLVMQFIPGDDLSEMMNRKR
                     GPFPADQVLTWADQLLDALDYLHTQDPQIVHRDIKPQNLKLTSRGQVILLDFGLAKGQ
                     AGDISRVTTSASIFGYTPNYAPLEQIQGLGTDSRSDLYSLGATLYHLMTGVKPPDALT
                     RAAAVVNGQPDPLAPASEANPAVARDVDAVLGKAMAQNREQRFATAADMRRALHETDQ
                     ATTVVNRGEAQTVLFPPP"
     gene            969..3821
                     /locus_tag="VGD38_05250"
     CDS             969..3821
                     /locus_tag="VGD38_05250"
                     /inference="COORDINATES: protein motif:HMM:NF015644.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0182 family protein"
                     /protein_id="HEY0727456.1"
                     /translation="MSANARNAKVIDVTPRRRRLWVWLLIAAVLLVVSFSRIVSIYLS
                     ALWFGSLGYSSVYWYIFKAKALLFIGFAVLTALLLSATFWLFQRLFGAYAFEKRTIVL
                     NNQPFQFSPARFIRPLGWIVSAVVGLIYGFNLKEHWRQFALYFNQPATATHDPIFGKS
                     LGFYLFSLPFYDLVSSWLFGVTVIILFAALAYSLLGLPQTVLKPSVRWSSGAAFRGVC
                     CALALVLLVLSWRTYLSRFPYLWQDHPIFSGVTYTEANYTLPALLFVMVALIIGAIIS
                     LVNAFSFRRFSLLVLAVALPMGVYILGVVLVPAYIQSFIVKPNELDRETPYISHNLEW
                     TRRGFGLEQIELRDYEAETSIAALDLQNNRASVDNIRLWDWRALQDTLRQIQAIRTYY
                     DFPDVDVDRYVVGGQTRQMMIAPREINDAKLPPSGLNWINQRLIYTHGYGVTMNSANG
                     FTSEGLPQFVLSNMPVQANAPEIKVTRPEIYYGELTDRYVYVNTNQQEFDYPQGDTNT
                     YTSYQGTGGIRIGNRLRRMVLAWGLGDLSKLPFSNDVRSDSRVLINRNVRSIVNGVAP
                     FLTYDKDPYIVVSNEGRLFWIMDAFTESTNFPYSTHHDVAGNSVNYVRNSVKVVIDAY
                     NGSANFYVFDKQDPLIAAYQRVFPGLFRDASEMPADLRAHVRYPETLLRAQGEVYNLY
                     HTQNPKTFFQREDAWNIANRITLDKDAKKQTTPIDPYYVLMQLPGEPQSMEFVLILPF
                     TPVNRNNLIGWIAGRSDGENYGKLLAYNFPKSRLIDGPLQIDARIDQNAQLSGQFTLW
                     NQQGSRVIRGHLLVIPLGRSLLFVEPIYLQAEHSPMPELRIVVLATHEKLAYGSTFGE
                     AMTNLFGDAAQATQPGTQPSQTSPAQPSQPGASPSPGAAASPTPSLNLQQLVNRAIQE
                     FDDYQRLTAEGKLGEAGQKLEQHRRTLEEIRRLTRP"
     gene            complement(3830..4642)
                     /locus_tag="VGD38_05255"
     CDS             complement(3830..4642)
                     /locus_tag="VGD38_05255"
                     /inference="COORDINATES: protein motif:HMM:NF028121.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter TatT component family protein"
                     /protein_id="HEY0727457.1"
                     /translation="MGNLRKSGEKVRAVMMVSAAVSLVFAGVACQTAPTTDRLAIDTG
                     DAKAAADRIAEADALYEGREDINKARVAVAALRQARTADYSNYEAAWKLSRAAFYVGD
                     RTDSDSERDDMFREGVEAGKVAVGLQPNKPEGHFWLGANYGGTAAHSTLANLSSFQDI
                     KGEMEAVLKIDESYQGYSAYLGLGRLYLQAPRVLGGDANKAIEYLEKGLKLNPNNTVM
                     RLHLAEAFVETNRGAEAKKQIETIMSATPDPKYTAEHKDAVAKAQKLQEKIR"
     gene            4788..5450
                     /locus_tag="VGD38_05260"
     CDS             4788..5450
                     /locus_tag="VGD38_05260"
                     /inference="COORDINATES: protein motif:HMM:TIGR01490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEY0727458.1"
                     /translation="MAGAAFYDLEGTLVSTNLVHTLSFYAGRQQGLMASFKKTAATYL
                     SLPLFAVTDQYSRKVFNDLYFKRYTGQSEDRLRYFAQELFEDVIKPAVFPGTYELIEK
                     SRKLGLRQIVITGALDLSVEPLMRHLGITEFVTNRLEFVNGVATGRLLPPVMAAATKA
                     SWIRTYTEREGISLSDSYAYTDSMSDLPMLSIVGHPAVINPDMRLRQTALHHDWPILN
                     LK"
     gene            5450..>6618
                     /locus_tag="VGD38_05265"
     CDS             5450..>6618
                     /locus_tag="VGD38_05265"
                     /inference="COORDINATES: protein motif:HMM:NF021387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050043 - lactate racemase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactate racemase domain-containing protein"
                     /protein_id="HEY0727459.1"
                     /translation="MALQLRRKTHESVVYIDRDSAPRIIPSGEDFILEDLPIGTRVLY
                     PNPSIKGLPNREAAIRYALNHPHGCDPLFAQLEPGMKVTIAVDDISLPLPPMATPDIR
                     QTILEIVCDMLAGHGVDDVHIIIANSLHRKMTEWEMKRMVGPRIFADYYPDRYYNHDA
                     EWSDGLIKIGETKHKDPLVLNRRAAESDLVIYVNINLVPMDGGHKSVAVGLCDYESLR
                     MHHDPQTIRDSDSYMDPAASALNHKVVQLGKIVDRELNVFHIETAINNRMYGADMDFL
                     LRNEDDFSAFDRMKFEAMRYTMNKLPRQARRKLLHSRPAQYEMIACHAGKTEPVHAKI
                     VAKGFEQYAIPIRGQADILITGIPDISPYNVYSILNPLLVQVMALGYHFNFYRNKP"
BASE COUNT         1343 a         2024 c         1853 g         1398 t
ORIGIN      
        1 cggcggcgga aacagcactg tttgcgcttc accgcgattc acaaccgtcg tcgcctgatc
       61 ggtctcgtgc aacgcccggc gcatgtctgc cgcggtcgcg aaacgctgtt cgcggttctg
      121 ggccatggcc ttgcccagca ctgcgtcgac gtctcgcgcc actgccggat ttgcttcact
      181 tgccggcgcg agcggatcgg gctggccgtt caccaccgca gccgcgcgcg tcaacgcgtc
      241 aggcggtttg acgcccgtca tcaagtgata gagcgtcgca cccagtgagt agagatcgct
      301 gcgcgagtca gtaccgagac cttgaatctg ttcgagtggc gcgtaattcg gcgtgtagcc
      361 gaaaatactc gcggaagtcg tgacgcgcga gatgtcgccg gcctgtccct ttgctaaacc
      421 aaagtccagc aggatcacct gtccgcgcga agtaagcttc aggttttgcg gtttgatgtc
      481 gcgatgaacg atctgcgggt cctgcgtgtg caagtagtcg agcgcgtcga gcagttggtc
      541 cgcccacgtc agcacctggt ccgcgggaaa tgggccacgc ttgcggttca tcatctccga
      601 caaatcgtcg ccggggatga actgcatcac gagaaactgg ccgtcgcctt ccgaaaaatg
      661 atcgctgaca cgcggcaacg ccggatgatg taaacgcgcc aggagccgcg cctcacgctc
      721 gaactgcttg cgcagacgct catccgcaaa caacgtctct ttcagcgcca ccgtcgtgtc
      781 gagtcgctga tcgagcgcct cgtacacggc gcccataccg ccctgtccga gctggcgaat
      841 aatgcggtaa cggccctgaa gaatggtttc cggctgaagc atcagtaggt aaacaccgcg
      901 acgactgcaa accgggcgat tatacacgct atctacagat tacacagatt gcgtgtatgc
      961 tatcgggcgt gagtgcaaac gcgcgcaacg caaaggtgat cgacgtgacc ccacgccggc
     1021 ggcggctgtg ggtctggctg ctgattgccg cggtgctgct ggtggtctcg ttctcgcgca
     1081 tagtctcgat ctacttgtcg gcgctctggt tcggctcact cggctactct tcagtctact
     1141 ggtacatctt caaagccaaa gcactgctct tcattggctt cgcggtcctg accgcgctgc
     1201 tgctgagcgc cacgttctgg ctatttcagc gactcttcgg tgcgtacgct ttcgaaaagc
     1261 gcacgatcgt gctcaacaac cagccgtttc agttttctcc ggcgagattc atccggccgc
     1321 tcgggtggat cgtctccgct gttgttggac tgatctacgg cttcaacttg aaagagcact
     1381 ggcggcagtt cgcgctctat ttcaatcagc cggcaactgc gacgcacgat ccgatcttcg
     1441 gcaagtcgct cgggttctac ctgttttcgc tgccgtttta cgatctggtt agctcgtggc
     1501 tgttcggcgt cacggtgatc attctgttcg cggcgctggc gtattcgctg ctgggtttgc
     1561 cgcagacggt gctgaagccg agcgtgcgct ggtcgtcagg cgctgcgttt cgcggcgtgt
     1621 gttgcgcgct cgcgctggtg ttgctggtgc tgagctggcg cacgtatctc tcgcgcttcc
     1681 cgtatctctg gcaggaccat ccgatctttt cgggcgtcac ttacacggaa gcgaactaca
     1741 cgcttcccgc gctgctcttc gtgatggtgg cgctgatcat cggcgcgata atttcgcttg
     1801 tgaacgcctt cagcttcaga cgttttagtc tgctcgtgct cgcggtggcg cttccgatgg
     1861 gcgtgtacat tcttggcgtc gtgctcgtgc cggcgtacat tcagagtttc atcgtcaaac
     1921 ccaacgagct cgatcgcgaa acgccgtaca tcagtcacaa ccttgaatgg acgcgccgcg
     1981 gtttcggcct cgaacagatc gaactgcgcg actacgaagc cgagacgtcc atcgccgcgc
     2041 tcgatctgca aaacaatcgc gcgagcgtag acaacattcg cctctgggac tggcgtgcgc
     2101 tccaggacac gttgcggcag attcaagcga ttcgcactta ctacgacttt cccgacgtcg
     2161 acgtggatcg ttacgtcgtc ggcggccaaa cgcggcagat gatgatcgcg ccgcgcgaga
     2221 tcaacgacgc gaaactgccg ccgtccgggc tcaactggat caatcagcgg ctcatttaca
     2281 cgcacggtta cggcgtgacg atgaacagcg cgaacggctt cacgtccgaa ggtctgccgc
     2341 agtttgtgct ttcaaacatg ccggtccagg caaacgcgcc cgagatcaag gtcacgcgtc
     2401 cggagatcta ttacggcgag ctgacggatc gttacgtcta cgtcaacacg aaccagcagg
     2461 agtttgacta tccgcagggc gatacgaaca cgtacacgtc gtatcaaggc accggcggga
     2521 tcaggatcgg caaccgcttg cggcgcatgg tgctggcgtg gggtctcggc gacttgtcga
     2581 agctgccgtt ttcgaacgac gtgcgaagcg acagccgcgt gctgatcaat cgcaacgttc
     2641 gctcgatcgt caatggcgtg gcgccgttct taacttacga caaagatccc tacatcgtcg
     2701 tcagcaacga aggccggctg ttctggatca tggacgcgtt caccgagtcg actaactttc
     2761 cttactcgac gcatcacgac gttgcgggca attcggttaa ctacgttcgc aacagcgtga
     2821 aggtcgtgat cgatgcttac aacggctcgg cgaactttta cgttttcgac aagcaggacc
     2881 cgctgattgc ggcataccag cgcgtgtttc cgggattgtt tcgcgacgcg agtgagatgc
     2941 cggcggattt gcgggcgcac gtgcgttatc cggaaacgct gttgcgcgcg cagggcgagg
     3001 tttacaacct ctatcacacg cagaacccga agacgttttt ccagcgtgaa gacgcgtgga
     3061 acatcgcgaa ccgaatcacg ctcgataaag acgccaagaa gcagaccacg ccgatcgatc
     3121 cttactacgt gttgatgcag ttgccgggtg agccgcagtc gatggagttt gtgctgatcc
     3181 tgccgttcac gccggtgaat aggaataatt tgattggctg gattgcggga cgcagtgacg
     3241 gtgagaacta cggcaagtta ctcgcgtaca acttcccgaa gtcgcgtttg attgatggtc
     3301 cattgcagat cgacgcgcgt atcgatcaga acgcgcagct ttcgggacag tttacgttgt
     3361 ggaaccagca ggggtcgcgc gtgatacgcg ggcatttgct ggtgataccg cttgggcgtt
     3421 cgttgttgtt tgtcgagccg atttatttgc aggcggagca cagtccgatg ccggagttga
     3481 ggatcgtggt cctggcgacg cacgagaagc tcgcgtacgg ttcgacgttc ggcgaagcaa
     3541 tgacgaacct cttcggggac gccgcccagg ccacacagcc gggcacacaa ccgagccaaa
     3601 caagccccgc acaaccaagc caacccggtg catctccgtc tccgggcgca gcagcaagtc
     3661 cgacgccttc actaaacctg cagcagttag taaaccgcgc aatccaggaa ttcgacgact
     3721 accagcgcct aaccgcggaa ggcaaactcg gcgaagccgg ccagaaactc gaacaacacc
     3781 ggcgcaccct cgaagaaatc cgccgcctca cccgcccgta gccacagatt taacggatct
     3841 tctcctgtaa cttctgcgcc tttgcgacgg cgtctttgtg ctccgcggtg tatttgggat
     3901 cgggcgtcgc ggacatgatg gtctcgatct gtttctttgc ttccgcgccg cgattggttt
     3961 ctacgaacgc ctcggcgagg tgcaggcgca tcacggtgtt gttgggattt aacttcaatc
     4021 ccttttccaa atactcaatc gctttgttgg cgtcaccacc caacacgcgc ggcgcttgca
     4081 aataaagccg cccaagcccc aggtaagcgc tgtagccctg gtaactctcg tcgatcttca
     4141 acaccgcttc catctcgcct ttaatgtcct gaaaactcga aaggttcgcg agcgtgctgt
     4201 gggccgcggt gccgccatag ttcgccccta accaaaaatg gccctcgggt ttgttcggct
     4261 gaagcccgac cgccaccttc cccgcctcga cgccttcgcg aaacatgtca tcccgttcgg
     4321 aatcactatc cgtgcggtcg ccaacgtaaa acgccgcgcg cgacagtttc cacgccgctt
     4381 cgtagttgct gtaatcggcc gtccgcgctt gccgcagcgc cgcgaccgcg actctcgcct
     4441 tgttgatgtc ctcccgcccc tcgtaaagcg cgtccgcttc ggcgatccgg tccgcggccg
     4501 ccttcgcgtc gcccgtgtcg atcgccaggc ggtcggtcgt gggcgccgtc tggcacgcaa
     4561 cacccgcaaa aacgagcgaa acagccgccg aaaccatcat caccgcacgc accttttcgc
     4621 cacttttcct aagatttccc atcgatcgac ctccgattgt ctagcaccgc catacagttt
     4681 gtaatacttt tgctttcgcg ttaacgaaac ggcccttaat acggtatagt ggctctcgtt
     4741 tcggcgccaa ccagcaataa ttcacgccgg gtttacagga ggagagcttg gcaggggcag
     4801 cattctacga tcttgaagga actctggtga gcaccaatct ggtgcatacg ctgtcttttt
     4861 acgccggccg ccagcagggg ctgatggcca gtttcaaaaa gactgccgcc acgtatctga
     4921 gcctgccttt gttcgcagtg acggaccagt atagccgaaa agtatttaac gacctctatt
     4981 tcaagcgcta cacgggccaa tcggaggacc gcctgcgcta cttcgcgcag gaactgtttg
     5041 aagacgtgat caagccggcg gtctttcccg gcacttacga actaatcgaa aaatcaagaa
     5101 agctgggcct gcggcagatc gtgatcacgg gcgcgctgga cctctcggtc gaaccgttga
     5161 tgcggcacct gggaatcacg gagttcgtca cgaaccggct cgagtttgta aacggcgtcg
     5221 cgaccggccg tctgctgccg ccggtgatgg ccgcggcgac caaagcgtcg tggatcagga
     5281 cctacaccga gcgcgaaggc atcagcttga gtgactctta cgcctacacc gacagcatga
     5341 gcgatcttcc gatgctgtcg atcgtgggcc acccggccgt catcaacccg gacatgcgcc
     5401 tgcgacaaac ggcgctgcac cacgactggc cgatactgaa cctaaaataa tggcactaca
     5461 actcagacgt aaaacacacg aatccgtcgt ctacatcgac cgcgacagcg cgccgcgcat
     5521 cattccatca ggcgaagact tcattctcga agatctcccg atcggcacgc gcgtgctcta
     5581 cccgaatccg tctatcaagg gtctgcccaa tcgcgaagcc gcgatccgtt acgcgctgaa
     5641 tcatccacac ggctgcgatc cgctgttcgc gcagctcgag ccgggaatga aagtcacgat
     5701 cgccgtggac gacatcagcc tcccgttgcc gccgatggcg acgccggaca ttcgccagac
     5761 gatcctcgag atcgtctgcg acatgctcgc cggtcacggc gtcgacgacg ttcacatcat
     5821 catcgccaat tccctgcacc ggaagatgac cgagtgggaa atgaagcgca tggtcggacc
     5881 gcggatcttc gcggactact atcccgatcg ttattacaac cacgacgccg agtggtccga
     5941 tggactcatc aagatcggcg aaaccaaaca caaagatccg ttagtgctga atcgccgcgc
     6001 tgccgaaagc gatctggtga tctacgtcaa catcaatctc gtgccgatgg acggcggaca
     6061 caaatccgtc gccgtgggct tgtgcgacta cgagtcgctg cgcatgcacc acgatccaca
     6121 gacgattcgc gattcagaca gttacatgga tccggccgcc tcggctctga atcacaaagt
     6181 cgtccagctc ggcaagatcg tcgaccgcga actcaacgtc tttcacatcg aaaccgccat
     6241 caacaaccgc atgtacggcg cggacatgga tttcctgctg cgcaacgagg acgacttcag
     6301 cgctttcgat cgcatgaagt ttgaagccat gcgttacacg atgaacaagt tgccgcgcca
     6361 ggcgcgtcgc aagctgctgc actcgcgacc cgcgcagtac gaaatgatcg cgtgtcacgc
     6421 gggaaagacc gaaccagtgc acgctaagat cgtcgcgaag ggttttgaac aatacgcgat
     6481 tccgattcgc ggccaggcgg acattctgat caccggtatt cccgatattt cgccgtacaa
     6541 cgtctattcg atcctgaatc cgttgctggt ccaggtgatg gcgctcggtt atcacttcaa
     6601 tttctatcgc aacaagcc
//
LOCUS       DASWTX010000337         3517 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_241896, whole genome shotgun sequence.
ACCESSION   DASWTX010000337 DASWTX010000000
VERSION     DASWTX010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3517
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_241896"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1261
                     /locus_tag="VGD38_05270"
     CDS             <1..1261
                     /locus_tag="VGD38_05270"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY0727460.1"
                     /translation="IQALRMNQSETLKEGGRDSVTGRSGKRLRGLLVMAEVAVSLVLL
                     IAAGLLINSFLRLRNIDPGFKVDRLLTMKIELPEPKYEEFERRTAFYTDLIQRVQSLA
                     GVRSAAVTTNLPLYRQGNSTSVRIEGRPDPPPGQELIVVTRIVSPAYFDTMSIPLLAG
                     RQFTDQDTETTPNAVVISETMARRFWPGEEAIGKRIGFGRATSEADWIQVIGIVKDVR
                     QFELNAEPRPQLYMSYRQAGFFAPEDLVVKTDVEPASMAAAVRKAVWEIDKDQPVSNI
                     KTMEEILGASIARQRFSMLLLGVFAGVALLLAAVGIYGVMSYSVAQRTHEIGIRMALG
                     AQTGAVLKLAVGYGLKLVVAGVVIGLVAALMLTRLMSTLLFGVTPTDPATFVLISLLL
                     VGVAAVASYIPARRATKVDPLIALRYE"
     gene            1496..2008
                     /locus_tag="VGD38_05275"
     CDS             1496..2008
                     /locus_tag="VGD38_05275"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEY0727461.1"
                     /translation="MPPTLMLILSVIVLSALAMLIHELGHLVAARLCRVPASELGFGM
                     GPKLVAFRVASIKLSFGLFPTASYVSLDGTALKQRSVPAQLFVHLGGIAFNLIAGLLT
                     YGTMFSWLNLMLAAGNILPLYKHDGWKCGVVILRALMQRTSPQVERAFTFSGGFASLV
                     IAWYVARLFS"
     gene            complement(2058..>3517)
                     /locus_tag="VGD38_05280"
     CDS             complement(2058..>3517)
                     /locus_tag="VGD38_05280"
                     /inference="COORDINATES: protein motif:HMM:NF037085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MBG domain-containing protein"
                     /protein_id="HEY0727462.1"
                     /translation="GSLTVDPRPLTITANNKTKVYGDTITFDETTPSTDFSVSGLVNA
                     DTVDSITLTSAGAAATATVSGSPYAIIASAAVGTGLSNYNISYVNGSLTVDPRPLTIT
                     ANNKTKVYGDTVVLDETTPSTDFSVSGLVNSDTVDSVTLTSAGAAATATVSGSPYAII
                     PSDAVGTGLDNYNITYVNGSLTVDPRPLTITATNKTKTYGDTVVFDETAPSTDFTVGA
                     MVNGDNVTSITLTSAGAAAGAPVLGSPYSIVPSAAAGPGVANYAITYVNGTLTVNKAS
                     LTITASSHTVTFGDAVPTITPSYTGFVAGDDPTDLTTQPTCSTTYTVGSLVGTYPTKC
                     ENAASSNYNITYVNGTVTVLTACSAFNGFLAPIGGAVEKLTGGSFADPVRSFKLNSTI
                     PVKFSAVCFGAPLTTGIHTLQAIKYSNSTTGDAPIDATPTDAATIGNQFRLTDGQWHF
                     NLSTKALGGSGQGIWLLKATLFDGSTYTVWVEIKK"
BASE COUNT          596 a          891 c         1198 g          832 t
ORIGIN      
        1 gattcaggcg ctgcggatga atcagagcga gacgctgaaa gaaggcggac gcgattcggt
       61 gaccggacgc agtggcaaac gtttgcgagg tttgcttgtg atggcggagg tcgccgtgtc
      121 gttggtcttg ttgatcgcgg cgggtttgtt aatcaacagc ttcctgcgtc tgcgtaacat
      181 cgatcccggc ttcaaggtgg accgtctgct cacgatgaag atcgagttgc cggaaccgaa
      241 gtacgaagag tttgagcggc gcactgcgtt ctacaccgat ttgattcagc gcgtgcagtc
      301 gctggcgggt gtgcgttcgg cagcggtgac gacgaacctg ccgctgtatc gtcagggtaa
      361 ttcgacttcg gttcggatcg aaggacggcc cgatccgccg ccggggcagg aactgatcgt
      421 cgtgacgcga atcgttagtc ccgcttactt cgacacgatg agtattccgc tcctcgcggg
      481 aagacagttc acggatcagg atactgaaac gacgccgaac gctgttgtga tcagcgagac
      541 gatggcgcgc cgtttctggc cgggtgaaga agcgatcggc aaacgcatcg gttttggacg
      601 tgccacgtct gaggctgact ggattcaggt gattgggatc gtgaaggacg tgcgccagtt
      661 tgagttgaac gcggagccgc ggccgcagct atatatgagt taccggcagg ctggtttctt
      721 tgcgcccgaa gatctggttg ttaagactga cgtcgagccg gcgagtatgg cggcggctgt
      781 gcgaaaggct gtttgggaga tcgataagga ccagccggtt tcgaacatta agacgatgga
      841 agagattctc ggtgcgtcga tcgcgcggca gcgtttcagc atgttgttgc tcggcgtgtt
      901 tgcgggtgtg gcgctgttgc tcgcggctgt tgggatttat ggcgtgatga gttactcggt
      961 ggcccaacgc acgcatgaga ttggcattcg catggcgctc ggcgcgcaga ccggtgcagt
     1021 gttgaagctt gcggtcggat atgggttgaa gctggttgtt gcgggtgtgg tgattgggtt
     1081 ggtggctgcg ttgatgttga cgcggttgat gagcacgctg ttgtttggcg ttacgccgac
     1141 tgatccggcg acgtttgtgc tgatttcgtt gttgctggtg ggtgtggcgg ctgttgcgag
     1201 ctacatcccc gcgcggcgcg cgacgaaagt cgatccgctg attgcgctgc ggtacgagta
     1261 gcggcaaagc cgagctgagt cctacaggtc tctgcgagcc gtgaagagtc actcaccgtc
     1321 gacgaggcgg tccggaaatt ttcacgacaa accgcaggag tgaagacagt ttttggcgag
     1381 tggcggatca caaatttcgt cactcgcatt ttcccccaca cgttttcctt tgaaatactc
     1441 ctcacggcca actggcacga cgcttgataa ttcacgcagc ggcgccgccc ccgcaatgcc
     1501 cccaactctc atgctgattc tttccgtcat cgttctctct gccctcgcta tgctcattca
     1561 cgagttgggc cacctcgtgg cggcccgact ctgccgcgta cccgcgtcgg agttgggatt
     1621 cggcatgggg cccaagctcg tggcgtttcg cgtcgcgagt atcaagctca gttttggtct
     1681 gtttcccacc gcctcttacg tcagcctcga cggcacggcg ctgaaacaac gatccgtgcc
     1741 ggcacaactc ttcgtccatc tcggcggaat cgccttcaac ttgatcgccg gactgctgac
     1801 ctacggcacg atgtttagct ggctgaatct catgctcgcg gcaggaaaca tacttccgct
     1861 ttacaagcac gatggttgga agtgcggcgt cgtgatcttg cgcgcgttga tgcagcgcac
     1921 gagtccgcag gtcgaacgcg cgtttacgtt ctcaggcggg tttgcgagtc ttgtgatcgc
     1981 gtggtacgtc gcgcggttgt ttagctgaag ccacagatcg cacggatgat ttgtgcgatc
     2041 tgtggcttta ggtgtgtcta ctttttgatc tcgacccaga cagtgtaagt gctgccgtcg
     2101 aagagcgtcg ccttgagcag ccagatgccc tggccgcttc cgccgagcgc cttcgtgctg
     2161 aggttgaagt gccattggcc atcagtcagg cggaactgat ttccgatcgt ggccgcgtcg
     2221 gtcggcgttg cgtcgatcgg cgcgtcgccg gtagttgagt tgctgtactt aatcgcctgc
     2281 aacgtgtgga tgccggtcgt gagcggcgcg ccgaagcaga ccgcgctgaa cttcaccggg
     2341 atggtgctgt tgagtttgaa cgagcgaacc ggatcggcga agctgccgcc ggtcagtttc
     2401 tcgaccgcac cgccgatcgg cgcgaggaag ccgttgaacg cgctgcacgc cgtgagcacg
     2461 gtgaccgtgc cgttgacgta ggtgatgttg tagttcgacg acgcggcgtt ttcacacttc
     2521 gtcgggtaag tgccgaccag cgaaccgacg gtgtatgtgg tcgagcaggt cggttgcgtg
     2581 gtcagatcgg ttggatcgtc gcctgcgaca aagcccgtgt agctcggcgt gatcgttgga
     2641 actgcgtcgc cgaacgttac ggtatggctc gaggcggtga tcgtcagcga cgccttgtta
     2701 actgttaggg tgccgttgac gtaggtgatg gcgtagttgg cgacgcccgg accggcggcc
     2761 gcactcggaa cgatgctgta tggcgaaccg agaaccggtg caccggcggc ggcgcccgcg
     2821 ctggtcagcg tgatgctggt gacgttgtcg ccgttgacca tggcgccgac ggtgaagtcg
     2881 gttgaaggtg ctgtttcgtc gaagacgacg gtgtcgccat aggtcttggt tttgttggtg
     2941 gcggtaattg tcagcggacg tggatcgacg gtgagagagc cgttgacgta ggtgatgttg
     3001 tagttatcga ggcctgtgcc gactgcgtcg ctcgggatga ttgcgtacgg tgagccggag
     3061 accgttgcgg tcgctgcggc gcccgcgctg gtgagcgtga cgctgtcgac ggtatcgcta
     3121 ttcacgaggc cgctgacgct gaagtcggtt gatggtgttg tttcgtcgag gacgacggtg
     3181 tcgccgtaga ccttggtctt gttgttggcg gtgatcgtta agggacgagg atcgacggta
     3241 agagaaccgt tgacgtagct gatgttgtaa ttgctgagac cggtgccgac tgccgcgctt
     3301 gcgatgattg cgtacggtga gccggagact gttgcggtcg ctgctgcacc ggcgctcgtt
     3361 agcgtgatgc tatcgacggt gtcggcgttg acgaggccgc tgacgctgaa gtcggttgac
     3421 ggtgttgttt cgtcgaaggt gatggtgtcg ccgtagacct tggtcttgtt gttggccgtg
     3481 atcgttaacg gacgaggatc gacggtaaga gaaccgt
//
LOCUS       DASWTX010000338         2281 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_198543, whole genome shotgun sequence.
ACCESSION   DASWTX010000338 DASWTX010000000
VERSION     DASWTX010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2281)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2281)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2281
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198543"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..771
                     /locus_tag="VGD38_05285"
     CDS             <1..771
                     /locus_tag="VGD38_05285"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEY0727463.1"
                     /translation="GSGFLAAFAAGLTIAALDVELCDCFIEYGGVTAEMLLLFTFVIL
                     GSSLIWTGFTELSWPTVIFAAFSMLIRVPVYLLSLIGSKVDRRGRAIIAWFGPSGLSS
                     LLLVLLPVFAGMPGSDRLFSVCAFIVLLSVVIHGTSPMLLARFCRPKETEEPAVERPA
                     LPVIETPPAVAAAVSDATITTNGAIEVGSQIVTIEEVNRLREAGEQLILLDVRTERSI
                     EGSETMAQGAVRMPPEHVAAQARELGLPKEAWLIAYCA"
     gene            954..2096
                     /locus_tag="VGD38_05290"
     CDS             954..2096
                     /locus_tag="VGD38_05290"
                     /inference="COORDINATES: protein motif:HMM:NF015535.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P1 family peptidase"
                     /protein_id="HEY0727464.1"
                     /translation="MLLTFSVHGQNRPRARDVGIQTGVLSPGPLNAITDVNGVLVGHT
                     TLIRGDNVRTGVTAILPHGGNLFREKVPGAVFVGNGFGKLAGSTQVNELGEIETPILL
                     TSTLSVPRVADYLMDYMLALPGNEDVQSINPLVAETNDGYLNDIRGRHITRDDVFNAI
                     KGAKGGAVAEGSVGAGTGTVAFGFKGGIGTASRKLPQRLGGFTVGVLVQSNFGGVLTI
                     NGAPVGQELDRYYLRDDLKQSARQRETKDTDADGSIIIVVATDAPVDARNLQRIAARA
                     MMGLARTGSAGTNGSGDYAIAFSTAEDVRVRTLNPNERNLPRSAKTLANDAMSPLFLA
                     VIEATEEAIYNSLFKATTISGKGRTVEALPLDRTLEILRKHGLVRQ"
BASE COUNT          463 a          683 c          688 g          447 t
ORIGIN      
        1 ggcagcgggt ttctggctgc gtttgccgcc ggactgacga tcgcggcgct cgacgtcgaa
       61 ttgtgcgact gtttcatcga gtacggcggt gtgactgcgg agatgttgct gctgttcacg
      121 tttgtcatcc tcggcagctc gctgatctgg accggtttca ctgagctcag ctggccgact
      181 gtgatcttcg cagcgttttc gatgctgatt cgcgtgccgg tttacctgct ttcgttgatt
      241 ggttcgaaag tagatcgccg cgggcgcgca atcatcgcgt ggttcggacc aagcgggctc
      301 agttcgctgt tgctggtttt gttgccggtg tttgccggca tgccgggaag cgatcggctg
      361 ttctcggtct gcgcgtttat cgtgctgctt tcggtcgtga ttcacggcac gtcgccgatg
      421 ctgctcgcgc ggttctgcag gcctaaggaa acagaagaac ctgcggtcga acgaccagcg
      481 ctgcccgtca tcgagactcc tccggcagtt gccgcggccg tttcggacgc tacgattact
      541 acaaacggcg cgatcgaagt cggctcacaa atcgtcacta ttgaagaagt aaatcgactg
      601 cgagaggcag gcgagcagtt gatactgctc gacgttcgta ccgagcgcag tatcgaagga
      661 agtgagacga tggcccaggg cgcggtccgc atgccgcccg aacacgtcgc tgcacaggcc
      721 cgcgagctcg ggctgccaaa ggaggcttgg ctgatcgcct actgtgcttg accaaacgaa
      781 gctaccagcg cccgggtggc gcaggaactt cgacaagcag gttggaccaa agcacgagcg
      841 ctactcggcg gctgggaagc atggcaacaa accggacagc ccgtcgagcc aatccgcaaa
      901 tccatgtcac ccgtttcggc ccgatgaagc accttctgat tttcgccctg attatgcttc
      961 tcacattctc ggttcacggc cagaacagac ctcgcgcgcg tgacgtcggt attcaaaccg
     1021 gagttctctc gcctggtcca ctgaacgcga tcaccgatgt gaacggcgtt ctcgtcggtc
     1081 acacgaccct gattcgcggc gacaacgtgc gcaccggtgt cacggcgata cttccgcacg
     1141 gtgggaacct gtttcgcgaa aaagttcccg gcgcggtgtt cgtcggcaac ggtttcggca
     1201 aactcgccgg ttctactcag gtcaacgagc tcggcgagat cgaaacaccg atcctgctga
     1261 cttcaacgct gagcgtgccg cgagtcgccg actacctgat ggactacatg ctcgcgctgc
     1321 ccggcaacga ggacgtgcaa tcgatcaacc cgctggtcgc cgagacgaac gacggttatc
     1381 tcaacgacat tcgcggtcgt cacatcactc gcgacgacgt tttcaacgca atcaaaggcg
     1441 cgaaaggcgg cgcggtcgcc gaaggctcgg tcggagccgg aaccgggaca gtcgcgttcg
     1501 gcttcaaggg cggcatcggc actgcttcac gaaaactgcc gcaaagacta ggcgggttta
     1561 cggtcggcgt gctggtgcag tcgaactttg ggggcgtttt gacgattaac ggcgcgccgg
     1621 tcgggcagga actggaccgt tattacttac gggacgatct aaaacagtcc gcgcgccagc
     1681 gcgaaactaa agatactgac gccgacgggt cgataatcat cgttgtcgcc accgacgctc
     1741 cggtcgatgc acgcaacctg caacgcatag cggcgcgcgc gatgatgggt ttggcccgca
     1801 ccggctcagc cggcacgaac ggcagcggcg actacgccat cgccttctcg accgcggaag
     1861 acgtacgcgt gcgaacgctc aacccaaacg aacgcaatct gcctcgttca gctaaaacac
     1921 tcgcaaacga cgcgatgtcg ccactcttcc tcgccgtgat cgaagcgact gaagaggcca
     1981 tttacaattc actcttcaaa gccaccacca tcagcggcaa aggccgtacc gtagaagcac
     2041 tcccattgga ccgtacgctg gagatcctcc gcaagcatgg tctggtccgt cagtgaccag
     2101 ggcgtcgcag gagcgccgag gcgttaatgg gcttcgcaaa acgtcgaagg cgttaacagg
     2161 cttcgcacca acgaagttgg aacgccaacg gcgttcgcga gttggagccc agggttggag
     2221 tctgcgacaa ccctggggga acaatgaccg cttcgttccc aacgctgaaa gcgttggcga
     2281 g
//
LOCUS       DASWTX010000339         1934 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_241907, whole genome shotgun sequence.
ACCESSION   DASWTX010000339 DASWTX010000000
VERSION     DASWTX010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1934)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1934)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1934
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_241907"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..636
                     /locus_tag="VGD38_05295"
     CDS             <1..636
                     /locus_tag="VGD38_05295"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="PEP-CTERM proteins occur, often in large numbers,
                     in the proteomes of bacteria that also encode an
                     exosortase, a predicted intramembrane cysteine proteinase.
                     The presence of a PEP-CTERM domain at a protein's
                     C-terminus predicts cleavage within the sorting domain,
                     followed by covalent anchoring to some some component of
                     the (usually Gram-negative) cell surface. Many PEP-CTERM
                     proteins exhibit an unusual sequence composition that
                     includes large numbers of potential glycosylation sites.
                     Expression of one such protein has been shown restore the
                     ability of a bacterium to form floc, a type of biofilm;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEY0727465.1"
                     /translation="SMNLRTPKGPRIAPRRKRAVRAYTALALIVVLFTAGTVQADSVR
                     IDKVVQTLSRQQGPSDLRIGTTQDPIVGQTKTSTPTGGPRNDGPTAPVSGETAKIDGL
                     SLVQDPQKLGVELVEEAEVEGTICDCGEILLPGGAFPKWPLLFLAAVPLVFINDCDDC
                     TQTPDSTPTPTPPPPTPTPTPTPEPASLLLLGTGLVAVGAGLRRRRRNKIS"
     gene            633..1637
                     /locus_tag="VGD38_05300"
     CDS             633..1637
                     /locus_tag="VGD38_05300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727466.1"
                     /translation="MNFTLKNFKFVFAVLLALLFIGASPTSSVFAKKKAKFGIIKILT
                     TPGGLMLTIDGQPRGETMTEYRSFELEPGTHNVVVKLPNGSLWAREIDVPAGRVKCVV
                     VNYRPLPPPPKSPCPFPVNVSAPKSVGEGEIITYAADVSYGGGASHLRYNWTVSPASA
                     RIMSGAGSPTITVDSTGLGGQRIIATLSVDNGSKDPSCAQTAQAVSVVAAEEKKILVA
                     REFDECLNCTFDDQKARLDNLAVELQHDPTMTGHIIAYGGRTSPIGQVEMLMKRARDY
                     LTNERGIDGSRLVIVNGGFREGDSVELWLVPRGASAPRATPTVQAGEVKPTGTRRRRG
                     "
     gene            1738..1899
                     /locus_tag="VGD38_05305"
     CDS             1738..1899
                     /locus_tag="VGD38_05305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727467.1"
                     /translation="MAEEGGGGGSTGVVAVLVIFVIIVLAALFVFRDRIFRGGGTQKI
                     DVNISTPSK"
BASE COUNT          403 a          537 c          585 g          409 t
ORIGIN      
        1 agtatgaact tgcgtacccc caaaggcccc agaatcgctc ccagacgtaa gcgcgccgtc
       61 cgtgcgtata ccgctttagc cctgatcgta gttcttttta ccgccgggac cgttcaggct
      121 gattccgtac ggatcgataa ggtggtccaa acgttgagcc gtcagcaggg cccgtcggat
      181 ctcaggatcg gcacgacgca ggatccgatt gtcggtcaga cgaaaacgtc gacgccaact
      241 ggtggaccac gtaatgatgg tccaactgct cctgtttccg gtgagaccgc gaaaatcgac
      301 ggcttgtcac tggttcagga tccgcagaag ctcggagttg agcttgtcga ggaagcggaa
      361 gtcgaaggca cgatctgcga ttgcggcgag atcctgcttc cgggtggggc gtttccaaag
      421 tggccattac tgtttttagc tgcggtgccg ctggtcttca tcaacgactg cgacgactgc
      481 actcagactc cggattcaac gccgacgcca actcctccgc caccaactcc gacaccgact
      541 ccgactcccg aaccggcgtc gttgctgttg ttgggtacgg gcctcgtggc agtgggagca
      601 ggtttgagac ggcgacggag gaacaaaatc tcgtgaactt cactctgaaa aacttcaagt
      661 tcgtcttcgc tgttttgctg gcgctgttgt ttatcggcgc gtctcccacg tcgagtgtct
      721 ttgcgaagaa gaaagccaag ttcggcatca taaaaattct gactacgccg ggcggtttga
      781 tgttgacgat cgatggccaa ccgcgcggcg agactatgac cgagtaccgc tcctttgaac
      841 tcgagccagg cacccacaat gtcgtcgtca aactgccgaa tggcagtttg tgggctcgag
      901 agatcgatgt acctgccgga agagtgaagt gcgtggtggt gaattatcgt ccgttgccgc
      961 caccgccgaa gtcgccgtgc ccgttcccgg tgaacgtttc ggcgccgaag agtgtcggcg
     1021 aaggtgagat catcacctac gcggccgatg tctcgtacgg cgggggcgcg agccatttga
     1081 gatacaactg gaccgtcagt cccgcgagtg cgcgcatcat gagtggcgcc ggttcgccga
     1141 cgatcacggt cgattcgacc ggtctgggtg gtcaacgtat catcgccaca ctgtcggtcg
     1201 acaacggttc gaaagatccc tcgtgcgcgc aaactgcgca ggcggtatcg gtagttgctg
     1261 ccgaggagaa gaagatcctc gtggcgcgtg agtttgacga gtgtctcaac tgcacgttcg
     1321 acgatcaaaa agcgcgtctc gataacctcg cggtcgaact gcagcacgat ccgacgatga
     1381 cgggtcacat catcgcgtat ggcggccgca cgagtccgat cgggcaggtc gagatgctga
     1441 tgaaacgtgc gcgcgattac ctgaccaacg agcgtggtat cgatggctcg cgtctggtta
     1501 tcgtcaacgg cggtttccgt gagggcgaca gtgttgagct ttggctcgtg cctcgcggcg
     1561 cctcggcacc gcgcgccacg ccgacggttc aggcaggaga agtgaaacca accggcacac
     1621 gtcgtcgacg cggttgaaac taaatcaatc ctgagtacaa tggggtcgcc cctaagaagg
     1681 cgacccttcc ccatttttgc cccctcaaac aggctgattc agaggaggaa tcccgtcatg
     1741 gctgaagaag gcggcggagg cggcagcacg ggcgtcgtcg cggtgctggt catatttgtg
     1801 atcatagtgc tggcagcgct atttgttttt agagaccgga tatttcgagg cggcgggaca
     1861 caaaagatcg atgtgaacat ttcaacgccg agtaagtgac tttacctcac acgcttttgg
     1921 ccacagatta cgcg
//
LOCUS       DASWTX010000340         1643 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_155692, whole genome shotgun sequence.
ACCESSION   DASWTX010000340 DASWTX010000000
VERSION     DASWTX010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1643
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155692"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1643
                     /locus_tag="VGD38_05310"
     CDS             <1..>1643
                     /locus_tag="VGD38_05310"
                     /inference="COORDINATES: protein motif:HMM:NF024754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEY0727468.1"
                     /translation="SAAKNRGEDTKAFAARAEYGDERRAAIARVYQMYEDRLHANNAL
                     DFDDLLIKTVRLLKDVPEVREKYNNKFRYILVDEYQDTNSLQFALISLLTEKQQNIAV
                     VGDEDQSIYKWRGADISNILNFEKHFANTKTIRLEQNYRSTQTILDVAGAVVKHNLQR
                     KGKNLWTSNPRGGRVGYYQALDAEAEARWVAGKILEHRRDEFDLRAAVLYRTNSQSRV
                     FEEAMRRAGLQYNIIGGFSFYERMEVRDIIAYLKLALNPDDTIALQRVINSPPRGIGK
                     TTLDEIERRSKDAELSPWETLAEIINKPENLSTRAVSALRNFRQIVMRLGQMAGTMDG
                     EELPKFPSESPVSDVVRAAILDTGYEAALRSERTDEAEARLENLQELVNAAVDYDEQG
                     LEGLREFIDHSALVSDQDQYKRDAPVTLMTVHSAKGLEFPLVFIVGLEDGLFPHSRSA
                     TDPAELEEERRLAYVAMTRAERFLYVTHAMKRRVYGEELASEPSQFLNEMPIDLLEDL
                     SLGKSWLSFARGSSEIDYEHGEYRKEKKKYMGKTYDSVD"
BASE COUNT          398 a          459 c          471 g          315 t
ORIGIN      
        1 cagtgcggcc aagaaccgcg gtgaagacac gaaggcattt gcagcgcgag cggaatacgg
       61 cgacgaacgc cgtgccgcga tcgcgcgcgt ctatcagatg tacgaagatc gcctgcacgc
      121 gaacaacgcg ctcgacttcg acgacctgct gatcaaaacc gtgcgcttgc tcaaagacgt
      181 gccggaagtc cgagagaaat acaacaacaa gtttcgctac atactcgtcg acgaatacca
      241 ggacacgaac tcgctgcagt ttgcgctgat cagtttgtta accgagaagc agcagaacat
      301 cgccgtcgtc ggcgacgaag atcagtcgat ctacaaatgg cgcggcgccg acatcagcaa
      361 catcctcaat ttcgaaaagc acttcgcaaa cacgaaaacg atccggctcg agcagaacta
      421 tcgttcaacg caaacgattc tcgacgtcgc gggcgcggtg gtgaaacaca acctccagcg
      481 caaaggaaag aacctttgga cttcgaaccc gcgcggtgga cgcgtcggtt attaccaggc
      541 gctcgacgcc gaagctgaag cacgctgggt tgcggggaag attctcgaac atcggcgcga
      601 cgagttcgac ctgcgcgcgg cggtgcttta tcggaccaac tcgcagtcgc gtgtgtttga
      661 agaagcgatg cgccgtgcgg gtctgcaata caacatcatc ggcggttttt cgttttacga
      721 gcggatggaa gtgcgcgaca tcatcgcgta cctgaaactc gcgctgaatc ccgacgacac
      781 gatcgcgttg cagcgtgtaa tcaacagccc gccgcgcggt atcggcaaaa ctacgctcga
      841 cgagatcgaa cgccgctcga aagacgctga actctcgccg tgggaaaccc tcgccgagat
      901 cattaataaa cctgagaacc tcagcacccg agccgtttca gcactcagga attttcgtca
      961 aatcgttatg cgtctgggcc agatggccgg cacgatggat ggagaagaac tgcccaagtt
     1021 cccaagtgaa tcgcctgttt cggatgtcgt gcgcgccgcg attctggaca ccggttacga
     1081 agcagcgctg cgttccgaaa gaactgacga agccgaagcc cgtctggaaa acttgcagga
     1141 actggtcaac gccgccgtcg attacgacga acaaggtctc gaaggcttgc gcgagtttat
     1201 cgatcactcg gcactggttt ccgatcagga ccagtacaaa cgcgacgcgc ccgtgacctt
     1261 gatgacggtc cactcggcca agggtctcga gtttccactc gtcttcatcg tcggactcga
     1321 agacggtctg tttccacact cgcgttcggc aaccgatccg gccgagctcg aagaagaacg
     1381 ccgtctcgct tacgtcgcga tgacgcgcgc ggaacgtttt ctttacgtga cgcacgcgat
     1441 gaagcggcgt gtttatggtg aagagctcgc gtctgagccg tcgcagtttt tgaacgagat
     1501 gccgatcgat ctgctggagg atctgagtct tgggaagtcg tggctttcgt ttgcgcgcgg
     1561 ctcgtcggag atcgattacg agcacgggga ataccggaaa gaaaagaaga aatatatggg
     1621 caagacttac gacagtgtcg att
//
LOCUS       DASWTX010000341         6624 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_177191, whole genome shotgun sequence.
ACCESSION   DASWTX010000341 DASWTX010000000
VERSION     DASWTX010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6624
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177191"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1162
                     /locus_tag="VGD38_05315"
     CDS             <1..1162
                     /locus_tag="VGD38_05315"
                     /inference="COORDINATES: protein motif:HMM:NF012449.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEY0727469.1"
                     /translation="VDRFLNQDRQALRHLLDHGAGVVSFVAVSFVNRAEDILDVKREI
                     EKQLEAKYGPEAGRYAPAIVAKIETRLAWENLDHILDVSDCVMVARGDLGLQLNPQEV
                     PAIQKEIIRRCNLRGKPVITATQMLDSMESSMEPTRAEANDVFNAIQDGTDAVMLSGE
                     TSIGKYPAQAVAMMTQIAEQAEKFYFAKHSGRVYRGRLQDILRDSEESSEKTTVRLEQ
                     SKTYWANKATKAKIPVEERSEYQWRGELYDEKVTRSEKQTTTDSISESACLLSAEKGY
                     SAIVAPTTSGRTARMIARFRPHVPIVGVAHDDANARKLIISFGVYPLSIGEGQEGVEE
                     VFQQACAAALKPGYVPWDEEFQLLKDGDQVVATSGTPLKEIGTTNLIQIRKV"
     gene            1174..2589
                     /locus_tag="VGD38_05320"
     CDS             1174..2589
                     /locus_tag="VGD38_05320"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY0727470.1"
                     /translation="MSKRYDAIVVGAGPNGLAAAIEFAKRGRSVCVYEANENAGGSAR
                     SAALTLPGFVHDTCSAVHPLAVGSPFFKSLSLAEYGLEFVYSPAALAHPFDDGTAILL
                     HRSVEQTSEQLGADARAYRRLFEPLVRDWEILAPELLGPIQFPRHPFAMARFGLNAIR
                     PATSFAKFRFSEERTRAFFAGVVAHSCLSLDSAGTTAFGLVLLALGHTGGWPIPRGGT
                     QKISDAMAAYLKSLGGEIVTGVRVESLDDLAPSHCVLFDLTPRQLLKIAGKRFPSSFT
                     EKLSKYRYGPAAFKMDWALDGPVPWRARECAQAATVHLGGSLAEIEASESAIWEGKVT
                     DRPYVLVSQPSLFDPSRAPENKHTLWAYCHVPNGSDVDMSERIEDQIERFAPGFRSRI
                     IGRSVLTPAQLESRNANLVGGDINGGAATLAQMFTRPTIHTYSTPLKGVYICSSSTPP
                     GGGVHGMCGYHAARVALKNLS"
     gene            2756..2959
                     /locus_tag="VGD38_05325"
     CDS             2756..2959
                     /locus_tag="VGD38_05325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727471.1"
                     /translation="MAEKKGSTKRELIDTGNDKRFVRRDEKGRFEEVEDVGRSLAQDV
                     RKHAKTKVQSGQGDRGDQKRDDG"
     gene            2949..3155
                     /locus_tag="VGD38_05330"
     CDS             2949..3155
                     /locus_tag="VGD38_05330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HEY0727472.1"
                     /translation="MTDEADILIVGAGVAGLTAARELRSLKELSARLATIEDTIYFAG
                     EAANTRDTSARSTAPSNPDCAPHN"
     gene            3253..3915
                     /locus_tag="VGD38_05335"
     CDS             3253..3915
                     /locus_tag="VGD38_05335"
                     /inference="COORDINATES: protein motif:HMM:NF016131.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory protein FdhE"
                     /protein_id="HEY0727473.1"
                     /translation="MNTQKQIYDSLRARRDWLPSGSLEDDLSVLQEHARVFLKVVSSV
                     APPALAEQADASDELLLEYWLNRSDKLFFPKAFLQPYAHWSVQSGALGRQSSTPENRC
                     PYCFGKPQLSFLRVTESGSESGNRHLLCATCLSSWEYRRVVCASCSEERPFKLEYFKS
                     DEFDHVRIEACESCKQYIKGIDLTRLGLAVPLVDDVATAALDLWATEKGYAKIELNLV
                     GL"
     gene            4015..4596
                     /locus_tag="VGD38_05340"
     CDS             4015..4596
                     /locus_tag="VGD38_05340"
                     /inference="COORDINATES: protein motif:HMM:NF016750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727474.1"
                     /translation="MGVSRRTFLKTTIVGGAGVSVFGFSLAPIYAQTRGLKIDRTTET
                     RSTCPYCSVSCGVIIHTIGDKAKNVTPQVVHVEGDPDHPINRGTLCPKGASLEQEIVN
                     DRRLLKPQVRRPGSDHWEDISWDDAFNEIGRWVKKTRDETFVEKDEQGYTVNRCEGIG
                     WTGGCTDTNELNFLAVKTMRSLGVCYFETQARV"
     gene            4645..>6624
                     /locus_tag="VGD38_05345"
     CDS             4645..>6624
                     /locus_tag="VGD38_05345"
                     /inference="COORDINATES: protein motif:HMM:NF012602.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEY0727475.1"
                     /translation="MTNGWIDIKNTDMMLIMGANPAENHPCGFKWAIEAKLKRNAKMV
                     VVDPRFTRTAATADLFLQIRAGADIAFLGGLINYAIQNDRLAKEYLVNFTNAAFIVKE
                     GFKLPEDGLFSGFDGQSNYEKETWNYEAAGGGGGGASQTPPEKSPSAAGGEMSSTTGG
                     GHQAAGGPGAAGQGGPKPPPTMPENVAYDLTLQHERSVFQLLKKQYSRYTPEMVERIT
                     GIPKDQFLKAADLFTSVRKNGDTKMAATIIYAVGWTQHTTGTQIIRTAAILQLLLGNV
                     GRAGGGVNALRGHCNIQGATDMGGVFDIFPGYLKIPAPSDKDLATFLKRSTPKQSKPG
                     EWQSYNYWTYTPQFMVSFLKALYGDAAQRGNDWAYHYLPKIDRKYSWTEMWDYMYQGK
                     VKGLFAFGMNGVAIGPNSRKNIEALKKADFLVVCDIYPEETAEFWRAPGTTADQMKAI
                     NTTVYRLPGAGFAEKDGTFVNSARWLQWKYVAVPPPGNAKVDQEIVARIFLKVRELYQ
                     NEGGKFPDPILNLSWPYTTPTAPALAEVAKEINGKALSDLTDPLQPGVTIKAGQQVPG
                     FAWLRDDGTTACGNWLYSGSWTEAGALMQRRGTDDPSGLGIYPNWAWSWPANRRVMYN
                     RASCDPSGKPWDAERRQVWWSDAQQRWVGNDVPDFK"
BASE COUNT         1473 a         1870 c         1945 g         1336 t
ORIGIN      
        1 ggttgaccgt tttctcaacc aggatcgcca ggctttgcgg catttacttg accatggcgc
       61 cggtgttgtt tcgttcgttg cggtttcatt tgtgaaccga gcggaagaca ttctcgacgt
      121 gaagcgcgag atcgagaagc agttggaagc gaagtacggg cctgaagccg gacgttacgc
      181 gccggcgatc gtggcgaaga tcgaaacgcg gctcgcgtgg gaaaacctgg accacatcct
      241 cgacgtgagc gactgcgtga tggtggcgcg cggtgatttg ggtttacaac tcaatccgca
      301 ggaagtgccg gcgattcaga aagagatcat ccgccggtgc aacctgcgcg gcaaacccgt
      361 gatcacggcc acacagatgc tcgattcgat ggagtcgagc atggagccca ctcgggccga
      421 ggctaacgac gtcttcaatg ccattcagga tggcaccgat gcggtgatgc tttcgggtga
      481 gacttcgatc ggcaagtatc cggcgcaagc tgttgcgatg atgacgcaga tcgcggagca
      541 ggcggagaag ttttattttg ccaagcattc ggggcgggtt taccggggac ggcttcagga
      601 catcctgaga gactccgaag agtcgagcga aaaaacaacg gtgcggctcg aacagtcgaa
      661 aacgtactgg gccaacaaag caaccaaggc aaagataccc gtggaagaac gctctgagta
      721 tcagtggcgc ggcgaactct acgacgagaa ggtcacgcgc agtgagaaac aaaccacgac
      781 cgacagcatc tctgaatcag cttgtttgtt gagtgccgaa aagggttaca gcgcgattgt
      841 cgcgccgacc acctcgggac gcaccgcgcg catgatcgcg cgttttcgtc cgcacgtgcc
      901 gatcgtcggc gtggcccacg acgacgcaaa cgcacgcaaa ctgatcatca gctttggcgt
      961 gtatccactg agtatcggcg agggacagga gggcgtggaa gaagtgtttc agcaggcgtg
     1021 tgcggcagca ttgaaacccg gctacgtgcc gtgggatgag gagtttcagt tgttgaaaga
     1081 cggcgatcag gtcgtggcga cgagcggcac gccgttaaaa gaaatcggca cgaccaacct
     1141 cattcagatc agaaaagtgt aagctagctc cggatgagca aacggtacga tgcgatcgtc
     1201 gtgggcgccg ggccgaatgg cctcgcggcg gcaatcgaat ttgcgaagcg gggaaggagt
     1261 gtttgtgttt atgaagcgaa tgagaacgcc ggcggcagcg cgcgttcggc ggctttaacg
     1321 cttccgggtt ttgttcacga cacgtgttcc gcggtccatc cgctggcggt tggatcgccg
     1381 tttttcaaga gtctctcgct cgccgagtac ggcctcgaat ttgtttactc acctgcggcg
     1441 ctggcccatc cgtttgatga tggcaccgcc attttgcttc accgttccgt cgagcagaca
     1501 agcgaacaac tcggcgcgga tgcgcgcgcg tacagacgcc tattcgaacc actcgttcgc
     1561 gattgggaga tcttggcgcc tgaactttta gggccaatcc agttcccccg tcatcctttt
     1621 gcaatggcgc ggttcggctt gaatgcaatc cgcccggcga cgagttttgc gaaattccgc
     1681 tttagcgaag agcgcacgcg cgcgttcttc gccggtgtgg tagcgcattc ctgtttgtcg
     1741 ctcgatagtg caggcacgac ggcgtttggg ttggtgctcc tggcgctcgg tcacacagga
     1801 ggttggccca taccgcgcgg aggcacgcaa aaaatctcag acgctatggc ggcgtatttg
     1861 aaaagtctcg gcggagagat cgtgaccggt gtgcgcgtcg agtcccttga cgatcttgcg
     1921 ccgtcgcatt gtgtgctttt tgatttaact ccgcgtcagc ttttgaaaat cgcaggcaaa
     1981 cgttttccgt caagcttcac cgagaaactc agcaagtatc gttacggtcc cgcggcgttc
     2041 aagatggatt gggcgcttga tggtccagtg ccgtggcgcg cgcgtgagtg tgcgcaagcg
     2101 gcgacggttc atctcggcgg atcgctggcg gaaatagagg cgtcggaatc cgccatttgg
     2161 gaaggaaagg ttaccgaccg gccttatgtg ttagtttcgc agccgagtct tttcgatccg
     2221 tcgcgtgcgc ctgaaaacaa gcacacgttg tgggcctact gtcacgttcc gaacggttct
     2281 gacgtcgata tgagcgaacg tatcgaagat cagatcgagc gctttgcgcc cggctttcgt
     2341 tcgcgcatca tcgggcgcag tgtgttgacg cccgcgcagc tcgagagtcg caacgcgaac
     2401 ctcgtcggcg gcgacatcaa cggcggcgca gcaacgctcg cgcaaatgtt cacgcgcccc
     2461 acgattcaca cctacagcac gccactcaaa ggtgtctaca tctgctcctc ctcgactccg
     2521 cccggcggcg gcgttcacgg catgtgtggc tatcacgccg cgcgcgtggc gctcaaaaac
     2581 ttatcttaat cgtgtcgcgg aatagaacac tgaacccagg acaatgttct gagttcagcc
     2641 tttaggctgc tgtttcgcgc acacaagcta aagcttgaac tctaaacgct gaactcagca
     2701 agtggccctc tgtttgctct tcgttaatcg aaaatagcga atggaggagt gcaagatggc
     2761 tgaaaaaaaa ggtagcacca agcgtgaact gatcgacacc ggcaacgaca agcgatttgt
     2821 tcgccgcgat gaaaagggtc gtttcgaaga ggttgaagac gtcggcagat cgttagccca
     2881 ggacgtccgc aaacacgcga agaccaaggt ccaatcagga cagggcgacc gcggcgatca
     2941 aaaacgggat gacggatgag gcagacattc tgatcgttgg cgcgggcgta gcgggactca
     3001 cggccgcccg cgaacttcgc agtctcaaag aactctctgc acgactcgct acgatcgagg
     3061 atacaatcta cttcgcgggc gaggccgcca acacgcggga cacttcggca cgttccacgg
     3121 cgccatccaa tccggactgc gcgccgcaca actgattcaa tgttctcctg ggacacaagc
     3181 ataaaccgcg ctcaacaact cgccgaaagc tcaacgccgg cgagagagtt gctcacgttc
     3241 tatgcgactg tcttgaacac tcaaaaacag atttacgact cgttgcgcgc gcgccgtgac
     3301 tggcttcctt caggttcact cgaagacgat ttaagcgtcc tgcaggaaca cgcccgagtc
     3361 ttcttaaagg tcgtgtcctc cgtcgcccct ccggcgctcg cagaacaagc cgatgccagt
     3421 gacgaactgt tgctcgaata ctggctcaac cgctcagaca aactcttctt ccccaaagct
     3481 ttcttacaac cctacgcgca ctggtcagtg caatccggcg cgctcggcag gcaaagctca
     3541 actcccgaaa atcgctgccc ttactgtttc ggcaaaccgc agctcagttt tctccgcgtc
     3601 accgaatcgg gttcggaaag cggcaaccgg catctgctct gtgcgacgtg tctatcgtcg
     3661 tgggaatatc gccgcgtggt gtgcgcgtcg tgcagcgaag agcgtccgtt caaactcgaa
     3721 tacttcaaga gcgacgaatt cgatcacgtc agaatcgaag cgtgtgagtc gtgcaagcag
     3781 tacatcaaag gcatcgacct gacacgtctt ggcctcgcag tgcctttggt tgacgacgtt
     3841 gcaaccgccg cgctcgatct atgggccact gagaaaggct acgccaagat cgagctgaat
     3901 ctcgtcggtc tataaatcat ggttgacatt aagaaatccg tggcctagtc tgtttacgtt
     3961 ccctccgtta gcccctattc cccgatctat attcatcctt gctggagttg aggtatgggc
     4021 gtctccagaa gaacgtttct caagacaacc atcgtgggcg gcgccggagt ttccgtcttc
     4081 ggtttttcgc tcgcacccat ctacgcgcag acgcgcggat tgaagatcga tcgcacaact
     4141 gaaacacgca gcacgtgtcc gtattgctcg gtcagttgcg gcgtcatcat tcacaccatc
     4201 ggcgacaaag ccaagaacgt gacgccgcag gtcgtgcatg ttgaaggcga tcccgatcac
     4261 ccgatcaatc gcggcacgct ctgtcccaaa ggcgcgtcgc tcgaacagga aattgtcaac
     4321 gatcgccggt tgttgaaacc gcaggtgcgg cggcccggtt ccgatcattg ggaagacatt
     4381 tcctgggacg acgcgttcaa cgagatcgga cgatgggtca agaaaactcg tgacgaaacg
     4441 ttcgtcgaga aagacgagca ggggtacacg gtgaaccgtt gtgaaggcat cggctggacc
     4501 ggcggctgca ccgacaccaa cgaactcaac tttctcgcgg tcaaaacaat gcgcagtctc
     4561 ggcgtctgct acttcgaaac gcaggcccga gtttgacacg gtccgacggt ctccagtttg
     4621 gggcccacct tcggacgcgg cgcaatgacc aacggctgga tcgacatcaa gaacaccgac
     4681 atgatgttga tcatgggtgc gaatccggcc gaaaaccacc cgtgtggttt caagtgggcc
     4741 atcgaagcga agctgaaacg caacgcgaag atggtcgtcg tcgatccgcg tttcacccgc
     4801 acggctgcga ctgccgatct cttcttgcag atccgcgccg gagccgacat cgcttttctc
     4861 ggcggcctga tcaattacgc gattcaaaac gatcgcctcg cgaaagagta tctcgtcaat
     4921 ttcaccaacg cagccttcat cgtgaaggaa ggtttcaagc ttcctgaaga cgggctcttc
     4981 tcgggtttcg acggccaaag taattacgag aaagaaacat ggaactacga agcagccgga
     5041 ggcggcggtg gtggtgcttc gcaaacgccg ccggagaagt cgccgtctgc ggccggtggc
     5101 gagatgagca gcacgactgg cggcggccat caggctgcgg gtggtccagg cgccgccgga
     5161 caaggtggtc caaaaccacc gccgacaatg cccgagaacg ttgcttacga tctaacgctg
     5221 caacacgaac gctcggtgtt tcagttactg aagaaacagt actcgcgcta cacgcccgag
     5281 atggtggagc gcatcaccgg cattccaaaa gatcaattcc tcaaggccgc cgatctgttc
     5341 acttcggtgc gcaagaatgg tgacacgaaa atggccgcga cgatcatcta cgccgtcggt
     5401 tggacgcagc acacgaccgg cacacagatc attcgtacgg ctgcgattct gcaattgctg
     5461 ctcggcaacg tcggtcgcgc cggtggcggt gtcaacgcat tgcgtggtca ctgcaacatc
     5521 cagggcgcga ccgacatggg tggtgtgttt gacatctttc ccggctatct caagatcccg
     5581 gctccgtcag acaaggatct cgcgacgttt ttgaaacgaa gcacgcccaa gcaatccaag
     5641 ccgggcgagt ggcagtcata taactattgg acctacacgc cgcagttcat ggtgtcgttt
     5701 ttgaaggcgt tgtacggcga cgccgcgcag cgcggcaacg actgggccta tcactacctg
     5761 ccgaagatcg atcgcaagta ttcatggacc gagatgtggg actacatgta ccagggcaag
     5821 gtcaaaggtc tctttgcgtt cggcatgaac ggcgtcgcga ttggtccaaa ctcgcgcaag
     5881 aacatcgagg cgttgaagaa agctgacttc ctcgttgttt gcgatatcta tccggaagag
     5941 accgccgaat tctggcgcgc tccgggcact acggccgacc agatgaaggc gattaacacg
     6001 actgtctatc gtctgccggg cgccggcttt gccgagaaag acggcacgtt cgtcaactcg
     6061 gcgcgttggc tgcaatggaa gtatgtcgca gtgccaccgc cgggaaacgc gaaagtggac
     6121 caggagatcg tcgcgcgcat ctttttgaaa gtgcgcgagc tttatcagaa cgaaggcgga
     6181 aagtttcccg atccgatcct gaacctctcg tggccttata caactccgac ggctcccgcg
     6241 ctcgcggaag tcgcgaaaga gatcaacggc aaagcgctgt ccgatctcac ggatccccta
     6301 caacccggag tcacgatcaa agccggacaa caagtgcccg gatttgcgtg gctgcgcgac
     6361 gacggcacga ctgcgtgcgg caactggctc tactcaggtt catggaccga agccggcgcg
     6421 ttgatgcaac gccgcggcac tgatgatccc tccggtctcg ggatttatcc gaactgggcg
     6481 tggtcgtggc cggcgaatcg gcgcgtcatg tacaaccgcg cgtcgtgtga tccgtcaggc
     6541 aaaccctggg acgcggaacg cagacaggtc tggtggagcg atgcgcaaca acgttgggtc
     6601 ggcaatgacg tgccggattt caaa
//
LOCUS       DASWTX010000342         4160 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_133710, whole genome shotgun sequence.
ACCESSION   DASWTX010000342 DASWTX010000000
VERSION     DASWTX010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4160
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133710"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..619
                     /gene="panB"
                     /locus_tag="VGD38_05350"
     CDS             <1..619
                     /gene="panB"
                     /locus_tag="VGD38_05350"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR00222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEY0727476.1"
                     /translation="MPYGSFHTGEDEAVKNALRLVKEGGAEAIKLEGGHKRVPLVKRL
                     VDEEISVMGHIGLTPQSINQLGAYRVQGKTARAAQQLIDDAKALEDAGAFAVVLEVVP
                     REIARIITESIGIPTIGIGAGSHCDIQVLVLHDMLGLSFGKQARFVRPYANLSEVITD
                     AVTRYADDVRNGTYPSQAESYALPAETAEALEIENPTRDSKAEKS"
     gene            633..1511
                     /gene="panC"
                     /locus_tag="VGD38_05355"
     CDS             633..1511
                     /gene="panC"
                     /locus_tag="VGD38_05355"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004847070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HEY0727477.1"
                     /translation="MEIINRRQRMSSVARKIRREQDRTVGLVPTMGALHEGHLSLVRE
                     ARRMCDVVVVSVFVNPAQFGPGEDFERYPRDLTKDTALLTDYNVDYIFAPPVEEIYPK
                     GFATYVNVEGLSEQLEGASRPGHFRGVATVVTILLNTVRPDFAFFGQKDAQQALVIRR
                     LVKDLAFDTEIVILPIVREDSGLAISSRNLYLNAEEQASAAVIHRALKQAKNAFKDGE
                     RSAARIADVIRSTIETEPRARLDYVAVTDAETLEPLERIEEKPTLIAVAAYVGKTRLI
                     DNTILNKVKKKEAAPQ"
     gene            1518..2036
                     /locus_tag="VGD38_05360"
     CDS             1518..2036
                     /locus_tag="VGD38_05360"
                     /inference="COORDINATES: protein motif:HMM:NF013923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEY0727478.1"
                     /translation="MNSKRQIRFRLNGEDTEVAFAPHKTLLEVLREDLNLTGTKHGCE
                     LGECGTCAVLVDGRSILSCLMLGLDAEGRDVKTIEGMAIGAELHPLQQTFADTGAAQC
                     GYCSPGFLLVAEELLQKSPNPSRAEIQEALSGNLCRCTGYIKIYEAVELAAARMRGEA
                     YELPKESVYGLD"
     gene            2036..>4160
                     /locus_tag="VGD38_05365"
     CDS             2036..>4160
                     /locus_tag="VGD38_05365"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY0727479.1"
                     /translation="MDKNLNVVGKPFRKVDARAKCVGQTKFADDIVLPRMLFCKILRS
                     HVPHARIKNIDASKALALRGVFAVITGKDLPIPYGILPVSQDEHALCIDKVRFVGDPV
                     AAVAAIDEDVAFDAMNLIEVEYEPLNTISSIEEAVLIDEPRIHDYGDSGNVHKKVSLE
                     FGNLDEGFAEADLVREDVFFYEGNTHLPMEQHAAVAHFDADQKLTLWSSTQTPHYVHR
                     ALAKVFKMPAAHIRVIATPNGGGFGGKSDPFNHEVAVCKLAMITGRPVKVTLTREEVF
                     YCHRGRHPVLMKVKTGVKNDGAITAMHFQSFLDGGAYGSYGVASTFYTGALQTVTYDV
                     PRYKFQGLRAFTNKPPCGPKRGHGTPQPRYALEVQLDKIAEQLRIDPVEIRRNHLVAP
                     NTVTANYLRIGSMGLGACIDKIVEGSDWKNRFSWDFNNRKLPYGKGIGIACSSYICGA
                     GLPIYWNNMPQSGVQLRLDRQGGVCVMCGSTDIGQGSDSILAYIVAEILGIDPFDIRV
                     VTADTDLTPVDLGSYSSRVTLMTGNAAIQAAERARELLVMAVAEKLGVPIENLSLAER
                     RVFDVENPEVGVSFAEAVVLAESKFGTIGTVGSYTPPRSPGKFKGSGVGPSPAYSYSA
                     AVAEVDVNPDTGIVVVERVWIAHDIGRSINPMLVMGQVEGSVYMGLGEILMEEMTYRT
                     NRNVVHKFPSLLEYKSPTTMEMCDVK"
BASE COUNT          884 a         1070 c         1320 g          886 t
ORIGIN      
        1 catgccttac gggtctttcc acactggcga ggacgaagcg gtcaagaacg ctctgcgcct
       61 ggtgaaagaa ggcggcgcgg aagcgatcaa gctggaaggc gggcacaaac gcgtacccct
      121 cgtcaaacgg ttggttgacg aagagatcag cgtcatgggt cacatcggcc tgacaccgca
      181 gtcgatcaat caactgggcg cgtatcgcgt gcagggcaag accgcgcgcg cggcgcagca
      241 gttgatcgac gatgcgaagg ctttggaaga cgcgggcgcg tttgccgtgg tgcttgaagt
      301 cgtgccgcgt gagatcgcgc gaatcattac cgagagcatc ggcattccga ctatcggcat
      361 cggcgccgga tcgcattgcg acattcaggt gctggtactg cacgacatgc tgggtttatc
      421 gtttggcaaa caagcgcggt tcgttcgccc gtacgcaaat ctgagcgaag tgatcacgga
      481 tgccgtgacc agatacgccg acgacgtgag aaacggcact tatccgtcgc aagcggaatc
      541 gtatgctttg cctgctgaaa ctgccgaagc actcgaaata gaaaatccca cgagagactc
      601 aaaggccgag aagtcctagc caatcctcaa ttatggagat catcaaccgc cgtcagcgca
      661 tgagttccgt cgcgcgcaaa atccgccgtg aacaggatcg cactgtcggt ctggtgccga
      721 cgatgggtgc gctgcatgaa ggccacttga gtctggtgcg tgaagcgcgt cgaatgtgcg
      781 acgtggtggt tgtttcggtg ttcgtaaatc cggcgcagtt tggaccaggt gaagacttcg
      841 aacgctatcc gcgcgatctg acgaaagaca cagcgctcct gaccgattac aacgtcgact
      901 acatcttcgc gccgccggtc gaggagatct atccgaaagg ttttgctact tacgtcaacg
      961 tcgagggact ttcggaacag ctcgaaggcg catcgcggcc cggacatttt cgcggcgtcg
     1021 ccacggtcgt gacgatcctg ctgaacaccg tgcggccgga ttttgctttc tttggtcaga
     1081 aagacgcgca gcaggcgctc gtgattcgcc gcctcgttaa ggatctggcc tttgatactg
     1141 agatcgtgat cttgccgatc gtgcgcgagg attcgggact ggcgatttcg tcacggaatc
     1201 tgtatttgaa cgcggaagag caggcgtcgg cggccgtgat tcaccgggcg ctcaaacagg
     1261 cgaagaacgc gttcaaggat ggagaacgca gtgctgctcg aattgctgac gtgattcgct
     1321 cgacgattga aaccgagccg cgggcgcgtc tggattatgt cgccgtcacc gacgcagaga
     1381 cgttggaacc gctcgaacgc attgaggaaa agccgacgtt gatcgcggtc gcagcgtatg
     1441 tcggcaagac gcgtttgatc gacaacacga ttttgaataa ggtaaagaag aaggaagccg
     1501 caccgcagta attctcgatg aacagtaaga gacagattcg cttccgtctg aacggcgaag
     1561 acactgaagt agcttttgcg ccgcacaaga cgctactcga agtgttgcgt gaagacctga
     1621 atctcacggg cacgaagcat ggttgtgagc tcggcgagtg tggcacgtgc gcggtgctgg
     1681 ttgatgggcg ctcgatactt tcgtgtttga tgctcgggct ggacgctgaa gggcgcgatg
     1741 taaaaacgat tgaaggcatg gcgattggcg cagagttaca tccgttgcaa caaacgtttg
     1801 cggacacggg cgcggcgcag tgtgggtatt gttcgccggg gtttttgctg gtggcggagg
     1861 agttgttgca gaagtcgccg aacccttcgc gcgctgagat tcaggaagcg ctttccggga
     1921 atctttgccg ctgcaccggc tacattaaaa tttacgaggc agtggagttg gctgccgcgc
     1981 gcatgcgcgg tgaggcttac gaactgccga aagaaagcgt ctacggactg gattagtgga
     2041 taagaacctc aacgttgttg gaaagccgtt tcgcaaggtc gacgcgcgcg cgaagtgtgt
     2101 ggggcagacg aagtttgcgg acgacatcgt gctgccgcgg atgttgttct gcaagatact
     2161 gcgctcgcat gtgccgcatg cgcgaatcaa aaacatcgac gcctcgaaag cgctggctct
     2221 acggggcgtt tttgctgtta tcaccggcaa agacttgccg attccgtacg gcattctgcc
     2281 cgtcagtcag gatgagcacg cgctctgcat cgacaaggtg cgtttcgtcg gcgatccggt
     2341 ggccgctgtc gcggcgattg atgaagatgt cgcgtttgac gcgatgaatt tgatcgaggt
     2401 cgagtacgag ccgctcaaca cgatctcgag tattgaagag gctgtgctga tcgacgagcc
     2461 gcgcattcac gactacggcg acagcgggaa cgtgcataag aaagtgtcgc tggagtttgg
     2521 caatctcgac gagggatttg cggaagcgga tttggtgcgt gaggatgtgt tcttctatga
     2581 aggcaatact catctgccga tggaacagca cgccgctgtt gcgcacttcg acgccgacca
     2641 aaagctcacg ctctggagct cgacgcagac accgcactac gttcatcgcg cgctcgctaa
     2701 ggttttcaag atgccggccg cgcacattcg cgtgatcgcg acgccgaatg gcggcgggtt
     2761 tggcggcaag agcgatccgt tcaatcacga agtcgcggtt tgtaagcttg cgatgatcac
     2821 tgggcgtccg gtgaaggtca cgctcacgcg cgaggaagtt ttctattgtc atcgcgggcg
     2881 gcatccggtg ttgatgaaag tgaaaaccgg cgtgaagaac gacggcgcga tcacggcgat
     2941 gcactttcag tcgtttctcg atggcggcgc gtatgggagt tacggtgttg cgagcacgtt
     3001 ctacacgggc gcgttgcaaa ccgtcaccta tgacgtgccg cgctacaagt ttcaggggct
     3061 gcgtgcgttt accaacaagc cgccgtgtgg tccaaaacgc gggcacggca cgccgcagcc
     3121 gcgttacgcg ctcgaagttc agctcgacaa gatcgccgag caactgcgca tcgatccggt
     3181 cgagatccgg cgcaaccatc tcgtcgcgcc gaatactgtg accgctaatt acctgcgcat
     3241 cggcagcatg ggattgggcg cgtgtatcga caagattgtt gaaggttccg attggaagaa
     3301 tcgcttttcc tgggatttta ataatcgcaa gctgccgtac ggcaaaggca tcggcatcgc
     3361 ttgcagctcg tacatctgcg gcgcgggttt gccgatctac tggaacaaca tgccgcagtc
     3421 gggtgtgcag cttcgactcg accggcaggg cggcgtctgc gtgatgtgcg ggtccacgga
     3481 tatcggtcag ggatctgact cgatcctggc ttacatcgtc gctgagattt tgggaattga
     3541 tcccttcgac attcgagtcg tgaccgccga cacggatctg acgccggtcg atcttggaag
     3601 ctattcgagc cgtgtcacgt tgatgaccgg caacgctgcg attcaagccg cagagcgcgc
     3661 gcgtgagttg ctggtgatgg ctgttgctga aaaactcggc gtgccgattg agaacctgtc
     3721 gcttgccgag cgccgcgtgt ttgacgttga gaatcccgag gtcggtgttt cgtttgcgga
     3781 agccgttgtt cttgcggaat cgaagtttgg gacgattggt acggttggat cgtacacgcc
     3841 gccacgctcg ccgggtaagt tcaaaggctc cggtgttgga ccatcgccgg cttacagtta
     3901 ttcagcggcg gttgcggaag tcgatgtaaa tccggatacg ggaatcgtcg tcgtcgaacg
     3961 cgtttggatc gcgcacgaca tcggacgttc gatcaatccg atgctggtga tgggtcaggt
     4021 cgagggcagt gtgtacatgg gtctcggcga gatcctgatg gaagagatga cgtaccggac
     4081 gaaccgaaac gtcgtccaca agtttccgtc gctgcttgaa tacaagagcc cgacaacgat
     4141 ggaaatgtgc gacgtgaaga
//
LOCUS       DASWTX010000343         3222 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_395885, whole genome shotgun sequence.
ACCESSION   DASWTX010000343 DASWTX010000000
VERSION     DASWTX010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3222
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_395885"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3215)
                     /locus_tag="VGD38_05370"
     CDS             complement(<1..3215)
                     /locus_tag="VGD38_05370"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEY0727480.1"
                     /translation="MTTVHFVPSMLQVFVESGELQKCGSLRRVICSGEALPFELQERF
                     FRTSTAELHNLYGPTEAAVDVTFWECERESVRGVVPIGRPIANTEIYLLDERLQAVPV
                     GVCGELYIGGAGLARGYYGRAAMTAERFVPHPYSGRGGDRLYRTGDLARYLEDGEIEY
                     LGRMDHQVKLRGFRIELGEIEAALSAVSGVREAVVEARAARGGAEKRLVAYVVWESGF
                     EGSVNELRRQLKERLPDYMSPSAYVELAQLPLTANGKVDRRALPEPEVESGTVADEVG
                     RTPVEELLCGIWAEVLGIERVGLDDDFFELGGHSLLATQVVSRVRETCGVELALRELF
                     ESPTVRALALAVEAARRADDGGLAPPIVAVSRDRDLPLSFAQQRLWFLDQLEPQNPFY
                     NIPAGVRLSGPLNVEALGHAVSELVNRHEVLRTSFKLVAGQAVQVIGDGAEVRVEETD
                     LSELPADEREAEARRIAAESGQQPFDLGRGPLMRVKLLRLSEAEHVLVVVLHHIVSDG
                     WSMGVLVRELVELYAARCEEREARLTALPVQYADFAVWQREWLSGEELERQLGYWRKH
                     LADAPQLLELPTDRPRPAMQTYRGARESFSFNEELSAQLRLLARREGTTLFMAVLAIW
                     QVLLWRYTGQTDIVVGSPIANRNRAETENLIGFFVNTLVLRSRLLGQQSFRELLKQVR
                     EMTLDAYAHQDVPFEKLVEELQPERTLSHSPLFQVMFILQNTTQSDLDVAGIEFKPLS
                     TNTGTAQFDMTLDVAETDQQIYGVLNYNTDLFDATTVRRMVAHFEQLLGSVVADPAQT
                     LSDLTLLSESERERVLYKWNDTRVDYHDSHASLHQLIEAQVARTPGAVALVFGDNRLT
                     YAELNERSTLLAQHLHALDVRPDTPVAVCFERSIEMVVALLAVLKAGGAYLPLDPTYP
                     AERLQFMLEESRPRLLLAQESLLERLPKTDQLPVICLDSYDWSAHGPGAHELPTVSGD
                     NLAYVIYTSGSTGRPKGVMNTHAGLVNRLLWMQDRYGLDSSDRVLQKTPYSFDVSVWE
                     FFWPLMTGARLVLAEPEGHKDSAYLARLIAAQKVTTVHCVPS"
BASE COUNT          647 a         1116 c          863 g          596 t
ORIGIN      
        1 gacggcacac agtgaaccgt cgtcaccttc tgcgccgcaa tgaggcgcgc gagataagcg
       61 ctgtccttgt gtccttcggg ctccgcgagg acgaggcgcg cgcctgtcat caggggccag
      121 aagaactccc aaaccgacac gtcgaagctg taaggagtct tttgcaggac acgatcagaa
      181 gagtccaaac cataccgatc ctgcatccac agcagacggt tgacgagacc cgcgtgcgta
      241 ttcatcacgc ctttcggccg gcccgttgag ccggacgtgt agatgacgta cgccagatta
      301 tctccgctca ctgttgggag ctcgtgcgcg ccgggaccgt gcgcgctcca gtcgtaagag
      361 tcgagacaga taaccggcag ttgatccgtc ttcggcagac gttcgagcag agactcttgc
      421 gcgagcagga gacgcgggcg cgactcttcg agcatgaact ggagtcgttc ggcgggatac
      481 gtcgggtcga gtggaagata cgcgccgccg gctttgagca cggcgagcag tgcgaccacc
      541 atctcgatgg aacgctcaaa gcaaactgcg accggcgtgt ccgggcggac gtcgagcgcg
      601 tggagatgtt gcgcaagaag agtgctgcgc tcgttcagct cggcgtaggt caaacggttg
      661 tcgccaaaga caagggcaac cgcgccgggt gtgcgcgcta cctgtgcttc gattagttga
      721 tgaagcgaag cgtgtgagtc atggtaatcg acgcgcgtgt cgttccattt ataaaggaca
      781 cgctcacgct cggactcgga cagcagcgtc agatcggaga gcgtctgtgc cgggtcggcg
      841 acaacggaac caagtaactg ctcgaagtgc gcgaccatgc gccggacagt cgtcgcgtcg
      901 aacagatctg tgttgtagtt caacacgccg tagatctgct ggtccgtctc ggccacgtcg
      961 agcgtcatat caaactgcgc cgtgcccgtg ttcgtgctca acggcttgaa ttcaatgccc
     1021 gccacatcca agtcactttg cgttgtgttc tgcaagatga acatcacctg gaacagcggt
     1081 gaatgactca gcgtgcgttc cggctgtaat tcttccacca gcttctcaaa cggcacgtct
     1141 tgatgcgcgt aagcgtcaag cgtcatctcc cgcacctgct tcaacagttc ccggaagctt
     1201 tgttggccca acagccggct gcgcagcacg agcgtgttca cgaagaagcc gatcaggttc
     1261 tctgtctcag cacggttgcg gttcgcaatc gggctgccca ccacgatgtc tgtctgaccc
     1321 gtgtaccgcc acagcaacac ttgccagatt gccagcaccg ccatgaatag cgtcgtgcct
     1381 tcgcgtcgtg cgagcaatcg cagttgcgcg ctcaactctt cgttgaagct gaacgactcg
     1441 cgtgcaccgc gataagtttg catggcggga cgtggtctgt cagtcggcag ttccagtagt
     1501 tgcggcgcgt ccgccaagtg cttccgccag tacccgagtt gccgctccag ctcttcaccg
     1561 ctcaaccatt cacgctgcca cactgcaaag tccgcatact gcaccggcag cgcagtcagt
     1621 ctcgcttcgc gttcctcaca ccgtgccgcg tagagttcca ccaactcacg caccagcacg
     1681 cccatcgacc aaccgtccga gacgatgtga tgcagcacaa ccaccagcac atgttccgct
     1741 tcgctcagcc gcaacagctt cacccgcatc agcggcccgc gcccgagatc aaacggttgc
     1801 tgtccacttt ccgccgcgat gcgccgcgcc tctgcctctc tctcgtcggc cggcaactcg
     1861 ctcaggtccg tctcttccac gcgcacttca gcgccgtcgc cgatcacctg gaccgcttgt
     1921 cccgccacca gcttgaagct cgtacgcaat acttcgtgac ggttaaccaa ctcgctcacc
     1981 gcatgtccca gtgcttcgac gttcaatggc ccactcaggc gcacgcccgc ggggatgttg
     2041 tagaacgggt tctgcggttc cagttggtcc aggaaccaga gacgctgctg cgcaaacgaa
     2101 agcggcaagt cacgatcacg cgacacagcc acgatcggcg gcgccaatcc accatcatca
     2161 gcgcgacgcg ctgcttcaac cgccagcgcg agcgcgcgca ccgtcggcga ctcgaacagt
     2221 tcgcgcagcg ccaactccac cccacacgtt tcacgcacgc gcgacacgac ctgtgtcgcc
     2281 agcaacgaat gtccgcccaa ttcgaagaag tcgtcatcaa gtccgacgcg ctcgatgccg
     2341 agcacttccg cccagatgcc acacaacaac tcctccaccg gcgtccgccc gacctcgtcc
     2401 gctacagtgc cactctcaac ctccggctcg ggcaacgcac gtcgatcaac cttcccgttt
     2461 gccgtgagcg gcaactgcgc cagctcaaca taagccgacg gggacatgta gtcaggcagc
     2521 cgctctttca actgccgccg caactcgttc acagatccct cgaacccact ctcccaaacg
     2581 acgtacgcca ccaagcgctt ctctgctcca ccacgcgccg cacgcgcttc gaccaccgct
     2641 tctctcactc ccgaaaccgc actcagcgcc gcttcaattt cgcccaactc aatgcggaag
     2701 cccctcaact tcacctgatg gtccatccgg cccaggtact cgatctctcc gtcctccaga
     2761 tacctcgcca aatctcccgt ccggtacagc cggtctccgc cgcgcccgct gtagggatgc
     2821 ggcacgaacc gctcagccgt catcgccgcc cgtccgtaat agccgcgggc cagccccgcg
     2881 ccgccgatgt aaagctctcc acacacacca accggcacgg cctgcaagcg ctcgtcgagc
     2941 agatagattt cagtgtttgc aatgggccgc ccgatcggga cgacgcctct cacgctctcg
     3001 cgctcgcatt cccagaaggt gacatcaaca gcggcctcag tcggcccata gagattgtgc
     3061 agttcagccg tcgacgtccg gaagaaccgc tcctgaagct cgaatggcag cgcctcgccg
     3121 ctacagatca ctcgccgcag cgacccgcac ttctgaagct caccgctctc gacgaacact
     3181 tgcagcatcg acggcacgaa gtgaacggtc gtcacgttct gc
//
LOCUS       DASWTX010000344         2052 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_241967, whole genome shotgun sequence.
ACCESSION   DASWTX010000344 DASWTX010000000
VERSION     DASWTX010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_241967"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2052)
                     /locus_tag="VGD38_05375"
     CDS             complement(<1..>2052)
                     /locus_tag="VGD38_05375"
                     /inference="COORDINATES: protein motif:HMM:NF014110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727481.1"
                     /translation="AGQIGAVRIHPTNPDIVWVSAGGDIFKPNTERGIFKTTDGGQTW
                     RKVLFVSDTVGAMDVELQPGNPNVVYAWMSRLERKPWTIISGSREGGFYKSTDGGERF
                     TRITSGLPNDLIGKGNLAVTAAKPDRIYALIEAKPGGGFYVSDDAGQTWSLINSQGSL
                     IQRPFYYTTLGADPSNADVVYAGAEGFFKSTDGGKTFTSMRTPHGDNHDIWINPNNSD
                     IMVQANDGGANVSTDGGRTWSTQMNQPTAEIYGVWVDNQFPYKLYGAQQDNTTLIISS
                     QAEPFNPSDWRTGPGCETGPIMPHPRDPEIVYGSCKGQYGVMNLKTGQEKSYWIGGQS
                     LYGNPASDLIYRMQRVSPMATSPHDPEVLYYGSQYVHRTRDKGVTWEKISPDLTARPD
                     CCQGISGEPITRDITGEEFYSTLYAITESPLEKGVIWTGANDGPFHITRDNGKTWSNI
                     TPKDLPPGGRVQFIEASPHRKGSAYFAVYRWLLGDYAPYIYRTDDYGKTWTRLTDGKN
                     GIPADWPTRVVREDPDRAGLLYAGTEFGMFVSFDNGAHWQPFQLNMPNVPITDIKVHN
                     NDLVITTQGRAFWILDNITPLQQITPQLATSRVHLFAGRDGYRTRTRPDLLGPMVDYY
                     LPATHTGPVAMDVLDARGNLVASYSSETVDTTRRAGGAASEDPDEGPRRGGGFTSRVT
                     KD"
BASE COUNT          363 a          580 c          649 g          460 t
ORIGIN      
        1 atctttggtg acgcgcgatg tgaaaccgcc gccacgcctg gggccctcat ccggatcttc
       61 cgaagcagct ccgcccgcgc ggcgtgtcgt atccacggtt tcactcgaat acgaagcgac
      121 caggttaccc cgcgcatcca gcacatccat ggcgaccgga cctgtgtgtg ttgccggcaa
      181 ataataatcg accatcggcc ccagcaggtc cgggcgcgtg cgtgtgcgat acccgtcgcg
      241 tcccgcgaag aggtggacgc gcgacgtcgc aagctgcggc gtgatctgct gcaacggtgt
      301 gatgttgtcg agtatccaga acgcacgacc ctgcgtagtg ataaccagat cgttgttgtg
      361 cacttttatg tccgtgatcg gcacgttggg catgttgagc tggaatggct gccagtgcgc
      421 gccgttgtcg aacgagacga acatgccgaa ctcggtgccg gcgtagagca gtcccgcgcg
      481 atcgggatct tcgcgcacga cgcgcgtggg ccaatcagcg ggaatgccgt tcttgccgtc
      541 agtcaaacgc gtccacgttt tgccgtagtc gtcagtgcga tagatgtaag gcgcgtaatc
      601 gccgagcagc cagcgataca cggcgaagta agcggaacct ttgcggtgcg gcgacgcctc
      661 aatgaattgc acgcgcccgc ccggcggtag atcttttggc gtgatgttgg accacgtctt
      721 gccgttgtcg cgcgtgatgt gaaacggccc gtcgttcgcg ccggtccaga tgacgccttt
      781 ctcgagtggc gactccgtga tcgcgtagag cgtgctgtaa aactcttcgc cagtgatgtc
      841 gcgcgtgatc ggttcgccgc tgatgccctg acaacaatca ggacgcgccg tcagatcggg
      901 cgagatcttt tcccacgtca cgcctttgtc gcgcgtgcga tggacgtact gcgatccgta
      961 gtagagcact tcaggatcgt gcggcgacgt cgccatcggc gagactcgct gcatgcgata
     1021 gatgagatcg ctcgcgggat tgccgtacaa cgactgcccg ccgatccagt agctcttctc
     1081 ctgacccgtt ttcaggttca tcacgccata ctggcctttg cacgaaccgt agacgatctc
     1141 cggatcgcgt gggtgcggca tgattggacc agtttcacaa cccggaccgg tgcgccagtc
     1201 ggaggggttg aatggttcgg cctgactcga gatgatcagc gtcgtgttgt cctgctgcgc
     1261 gccgtagagt ttgtaaggaa actgattgtc gacccagacg ccgtagatct cggcggtggg
     1321 ttgattcatc tgtgtggacc acgtgcgccc gccgtcggtc gagacgtttg cgccgccgtc
     1381 attagcctgg accatgatgt cgctgttgtt tggattgatc cagatgtcgt gattatcgcc
     1441 gtgcggcgtg cgcatagaag tgaatgtttt gccgccgtcg gtggatttga agaaaccttc
     1501 cgcgccggca tagacgacgt cggcattgga aggatcggcg ccgagcgttg tgtagtagaa
     1561 cgggcgttga atcaacgagc cttgtgaatt gatcagcgac cacgtttggc cggcgtcgtc
     1621 cgaaacgtag aagccgccgc cgggtttggc ttcgatgagc gcgtaaatgc gatccggctt
     1681 cgcggccgtg acggcgagat tgcctttgcc gattaagtcg tttggtaacc cgctcgtgat
     1741 tcgcgtgaag cgttcgccac cgtcggtgct tttgtagaat ccgccttcgc gcgagccgct
     1801 gatgatcgtc cacggcttgc gttcgagccg cgacatccac gcgtaaacga cgtttggatt
     1861 gccgggttgt agttcgacgt ccattgcgcc gacggtgtcg gagacgaaca aaactttgcg
     1921 ccacgtttga ccgccgtcgg ttgttttgaa gattccgcgt tcggtgtttg gcttaaagat
     1981 gtcgccgccg gcggagaccc aaacgatgtc gggattggtt gggtgaatgc gtaccgcgcc
     2041 gatctgtccg gc
//
LOCUS       DASWTX010000345         2324 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_264055, whole genome shotgun sequence.
ACCESSION   DASWTX010000345 DASWTX010000000
VERSION     DASWTX010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_264055"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..637
                     /locus_tag="VGD38_05380"
     CDS             <1..637
                     /locus_tag="VGD38_05380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727482.1"
                     /translation="TPGLNTPRKHIYVLDPNGYRIEYKMIQPTGSPADEKYLYKYDGK
                     GNKVAEELFHKTSLVSRNENVYDETGRLIAQTIYNPDGTVAAKISNSFAPDGKPSERT
                     RHDGDLLTYRVRYKYDDKGRLAEIETAGSYVDMDSSADGYVTGRVVYVYKDKDRLKET
                     VTYNPDGSLRERVVFDYDSQGNWTKRTRRVPGRDKKKDSPAQIEYRTITYH"
     gene            757..1248
                     /locus_tag="VGD38_05385"
     CDS             757..1248
                     /locus_tag="VGD38_05385"
                     /inference="COORDINATES: protein motif:HMM:NF013630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEY0727483.1"
                     /translation="MGLFDKMFGSGASSAQQQSNSQQQFDQFKMKYQSVLNEIERQQV
                     QLHNLHVQDNKLFIKGTAPSDEAKNRVWEQIKLVDPNWQNDLTADFSVDQSRAMGAAA
                     GGGGGQSAQTYTVKAGDNLSKISKQFYGDANEYMRIFYANRDKLNDPDKIQVGQQLNI
                     PQA"
     gene            1312..>2324
                     /locus_tag="VGD38_05390"
     CDS             1312..>2324
                     /locus_tag="VGD38_05390"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY0727484.1"
                     /translation="MKTEAQATVGADPICEFYTNHPYPPPLPHLDRAINLWQDPNVHR
                     AEWYLLWPYKEYRADFDVLVAGCGTWQSAKFALTHPSARVTGIDVSTTSLQHTEALKQ
                     KYDLTNLEVRQLAIESATELDQQFDMIICTGVLHHLADPDAGLRALAPLLKPDGAMYL
                     MLYASYGRTGVHMIQEYCRRLGVTTSPQDIQDLTTVLRALPQHHPLISMFRGEKQALD
                     ADALVDALLNPRDRTYSVPQIYDFVERNGLKFGRWYWQAAYSPRCGAIADTPHGPRLA
                     ALPEREQYLEMELWRGLISNHDFVAYSGEGDSDRLQVRFDDDRYLKYIPIRRAWTTCI
                     EEKL"
BASE COUNT          552 a          652 c          665 g          455 t
ORIGIN      
        1 cacacctggg ctcaacacgc cacgcaaaca catttacgtg ctcgacccga acggttatcg
       61 aatcgagtac aaaatgattc agccgacggg ttcgcccgcc gatgagaagt atctttacaa
      121 gtacgacggt aaagggaaca aggtcgcgga agagcttttt cacaagacgt cactcgtcag
      181 tagaaatgag aatgtctacg atgaaacggg tcgattgatc gcgcagacta tctacaatcc
      241 ggacggaacc gtcgccgcga agatcagcaa ctcgtttgct cccgacggta aaccgagcga
      301 gcgtacgcgt cacgacggcg atctgctcac gtatcgcgtg cgttacaagt acgacgacaa
      361 aggaaggctc gccgagatcg agactgccgg gtcttacgtc gatatggatt cgagcgcgga
      421 tggttatgtt accggccgcg ttgtttacgt ctacaaagac aaggatcggc tcaaggaaac
      481 agtcacgtac aatcctgacg gctcgttgcg agagcgtgtc gtgtttgact acgactcgca
      541 agggaactgg acgaagcgca cgcggcgagt ccccggaagg gataagaaga aagattcacc
      601 ggcacagatc gaatatcgca cgataacgta tcactagaag ttgaacggtt tttgttcaac
      661 tcgattcgct cgtcgttaaa ttcccccgcc tttccatcgg cactcgcctt gcaactcacg
      721 ccgcaagaaa atcagtaata ttggaggacg tgagccatgg gtctgtttga caaaatgttc
      781 gggagcggag cgtcgagtgc tcagcagcag tcgaactcgc agcagcaatt cgatcaattc
      841 aagatgaaat atcagtccgt tttgaacgaa atcgaacggc agcaggtgca actgcacaac
      901 ctgcatgttc aggacaacaa actgtttatc aaaggcaccg cgccttctga cgaagcgaag
      961 aatcgcgtgt gggagcagat caaactcgtc gatccaaact ggcagaatga tctgaccgcc
     1021 gatttcagcg tggatcagag ccgggcgatg ggcgccgcgg ccggcggcgg cggaggccag
     1081 agtgctcaaa cctacaccgt gaaggcgggc gacaatctct cgaagattag caagcagttt
     1141 tacggtgatg cgaacgagta catgcggatc ttctacgcga atcgcgacaa gttgaacgat
     1201 ccggacaaaa tccaggtggg ccagcaactg aacatcccgc aggcttaaat cggtctttgg
     1261 gcgcgcggga ctctcccgcg cgcgcccgat cgctgtataa tctgcggtct catgaaaact
     1321 gaagctcaag caaccgtggg cgcagatccg atctgcgagt tttacaccaa ccatccctat
     1381 ccaccgccgc tgccgcatct cgaccgcgca attaaccttt ggcaagaccc gaatgtgcac
     1441 cgcgcggagt ggtatctgct ctggccgtac aaagaatatc gcgccgattt cgacgtgctc
     1501 gtcgccggct gcggcacgtg gcagtcggcg aagtttgcgc tgacgcatcc gagcgcgcgc
     1561 gtgaccggca tcgacgtgag cacgacgagc ctgcaacaca ccgaggcgtt gaagcagaag
     1621 tacgacctga caaacctcga agtgcgccag ctcgcgatcg agagcgcgac tgaactggat
     1681 cagcagttcg acatgatcat ttgcaccggc gtgctgcacc acctcgcgga tcccgacgcg
     1741 ggcctgcgtg cgctggcgcc gttgttgaag cccgacggcg cgatgtacct gatgctttac
     1801 gcgtcttacg gccgcaccgg cgttcacatg atccaggaat actgccggcg gctcggcgtt
     1861 accacgtcgc cacaggacat ccaggatctg accaccgtgt tgcgcgcgtt gccgcaacat
     1921 catccgttga tctcgatgtt tcgcggcgag aagcaggcgc tggatgcgga cgcgttggtt
     1981 gacgcgctgt tgaacccgcg cgaccgcacg tattccgtgc cgcaaatcta cgactttgtc
     2041 gaacgcaacg ggttaaagtt tggccgctgg tactggcagg ccgcttactc gccgcgctgc
     2101 ggcgcgatcg ccgacacgcc tcatggtcca agactggctg ctttgccgga acgcgagcag
     2161 tacctggaga tggaactgtg gcgcggtttg atcagtaacc acgactttgt tgcttatagc
     2221 ggtgaaggtg acagcgatcg gttgcaagta cgttttgacg acgatcgtta ccttaagtac
     2281 ataccgatcc gccgcgcatg gaccacgtgc atcgaggaaa agct
//
LOCUS       DASWTX010000346         2422 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_49261, whole genome shotgun sequence.
ACCESSION   DASWTX010000346 DASWTX010000000
VERSION     DASWTX010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2422)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2422)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2422
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49261"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..593)
                     /locus_tag="VGD38_05395"
     CDS             complement(<1..593)
                     /locus_tag="VGD38_05395"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEY0727485.1"
                     /translation="MIKAIFFDFNGVIIDDETIQMKAYQEILRGHDVNITEEWYFDSL
                     GMDDRTFVRSMFARAGKPLTDSVLESVMDAKTLMHRDIIKDELPLFPGVLTFLKSTSR
                     EFALGLVSMANKNEVGYVFERAGLTPLFSVVVTAEDTNVCKPAPDCYACGLEKLNEKR
                     QHERQLPLLPSECLAIEASPPGIQSARAAGMRTLGVT"
     gene            complement(590..1438)
                     /locus_tag="VGD38_05400"
     CDS             complement(590..1438)
                     /locus_tag="VGD38_05400"
                     /inference="COORDINATES: protein motif:HMM:NF017970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1003 domain-containing protein"
                     /protein_id="HEY0727486.1"
                     /translation="MAEPTQMTLEALRSVPLFASLDDEAARDLRNLLSEKTVPQNTRL
                     FRQGDTGDSMYLIESGRVRISIRDHDKQELTLAELAQGDFFGEMSIIDGRQRSADAQV
                     IENARLAVLSRDAFLSFVRKKPDVALEMLSALTDRLRRTDELLRSRVSRNVNDEEEAR
                     LTLADRAADLIAEFGGSWKFIIISMLLIIFWIIFNSWILIRGFDPAPYQMLNLTLAVI
                     AGMQAPIIMMSQNRQGGKDRLRADLDYQVNLKNELSLAEVLRRLDVLESERLPKLFEE
                     MKTQTK"
     gene            complement(1431..2123)
                     /locus_tag="VGD38_05405"
     CDS             complement(1431..2123)
                     /locus_tag="VGD38_05405"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0727487.1"
                     /translation="MTAILAAQEVSKIYQMGPNSVTALDNVSLEVREGEFVAIQGTSG
                     SGKSTLLNMLGGLDHPTKGEVYFASQPLGPFSKKEMARYRRFSVGMIFQNFNLIPTMT
                     ARENVALALAFGGLRGQQRRARSSELLARVGLGDRLSHKPSELSGGEQQRVAIARALA
                     NNPKVLLADEPTGNLDSIRAHELLALLREMVNQDSLTILMVTHDHELATSFADRIVFM
                     KDGRVVNGGFNG"
     gene            complement(2120..>2422)
                     /locus_tag="VGD38_05410"
     CDS             complement(2120..>2422)
                     /locus_tag="VGD38_05410"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEY0727488.1"
                     /translation="LSQPPDGTMPLQLKAGLHTGPCIAVTLNDRLDYFGSTVNLAARL
                     EALSTGSDVIISQSVYEDTQVRELLDQKQLLADEFDMSLKGFENERFALWRIRASE"
BASE COUNT          542 a          760 c          616 g          504 t
ORIGIN      
        1 ttcgtcacgc cgagcgttcg cattcccgcc gcgcgcgccg actgaattcc cggcggcgaa
       61 gcttcaatcg ccaaacactc cgacggcaac aacggcaact gccgttcatg ctgccgcttc
      121 tcattcaact tctccaaacc acacgcataa caatcaggcg cgggcttgca cacgttcgta
      181 tcttccgcag tcacgaccac tgaaaacaac ggcgtcagac cggcacgctc aaacacgtaa
      241 ccgacctcgt ttttgttcgc catgctcacg agcccgagcg cgaactctcg cgacgtcgat
      301 ttcaaaaacg tcaacacacc gggaaacaac ggcagctcgt ctttgatgat gtcgcgatgc
      361 atcaacgtct tcgcatccat caccgactcg agcaccgaat ccgtcaacgg cttaccggcc
      421 cgcgcaaaca tcgaccgcac aaacgtccgg tcgtccatgc ccaacgagtc gaagtaccac
      481 tcttcagtga tgttgacgtc gtggccgcgc aaaatttcct gatacgcttt catctgaatc
      541 gtctcgtcgt cgatgatgac gccgttgaag tcgaagaaga tggctttaat catttggttt
      601 gggttttcat ctcctcaaac agtttcggca aacgctcgct ctccaacacg tccaaacgcc
      661 gcaacacttc cgccagcgac aattcgtttt tcaagttcac ctggtaatcg agatccgcgc
      721 gcagccgatc ctttccgccc tgccggttct gcgacatcat gatgatcggc gcctgcattc
      781 cggcaatcac ggccagcgtg agattcaaca tctggtacgg cgcgggatcg aaaccgcgta
      841 tcagaatcca cgaattaaaa atgatccaga agatgatcag cagcatggaa atgatgatga
      901 acttccaact gccgccaaac tccgcgatca gatccgccgc acgatccgcc agagtcaaac
      961 gcgcttcttc ttcgtcgttg acgttgcgcg agacacgcga gcgcaagagc tcatccgtgc
     1021 gccgcaacct gtcggtcaac gcactcaaca tctccagcgc cacgtccggt ttcttacgca
     1081 cgaacgagag aaacgcatcg cgcgagagca ctgcgagccg cgcattctcg atcacttgcg
     1141 catccgccga acgctgacgc ccgtcgatga tcgacatctc gccgaagaag tcgccctggg
     1201 ccaactccgc gagtgtcagt tcctgcttgt cgtggtcgcg aatactgatc cgcacacgcc
     1261 cgctttcgat caggtacatg gagtcgcccg tgtcgccctg gcgaaacaga cgcgtgttct
     1321 gcggcacggt cttttcggaa agcaggttgc gcaggtcgcg tgccgcctcg tcgtcgagcg
     1381 aagcaaagag cggcaccgaa cgaagcgctt caagcgtcat ctgtgtgggc tcagccattg
     1441 aatcctccat taacaactct tccatctttc ataaacacaa tgcgatcggc gaagctggta
     1501 gcgagctcgt gatcgtgcgt gaccatcaag atcgttaacg agtcctggtt gaccatctcg
     1561 cgcaacaagg caagcagctc gtgcgcgcga atcgaatcga gatttcccgt cggctcgtcc
     1621 gcaagcaaca ccttgggatt gtttgccagc gcgcgagcaa tcgcgacgcg ttgttgttcg
     1681 ccgcctgata gttccgaagg cttgtgcgac aagcgatcgc ctaagcccac gcgcgccagc
     1741 aactcactcg aacgcgcgcg ccgttgttgt ccacgcaagc cgccgaacgc cagcgccagc
     1801 gcgacgttct cgcgcgcagt catcgtcggg atcagattga agttctgaaa gatcatgccg
     1861 accgagaaac gccggtaacg cgccatctct ttcttgctga acgggcccaa cggctgcgac
     1921 gcaaaataca cttcaccctt cgtcgggtga tcgagtccac caagcatgtt gagcagcgtg
     1981 gatttgcccg aacctgacgt gccctgaatc gcgacaaact cgccttcgcg gacttcgagg
     2041 gaaacgttat cgagggccgt cacgctattc gggcccatct ggtagatttt ggaaacttcc
     2101 tgagcggcta ggatggcagt cattccgatg ctctgattcg ccacaacgcg aatcgttcat
     2161 tctcaaatcc tttcaacgac atatcaaact cgtctgcaag cagttgtttc tgatcgagta
     2221 actcgcgcac ttgtgtgtct tcgtaaacag actgcgagat tatcacgtcg ctacccgtgg
     2281 acagggcctc gagccgcgcc gcgagattga cggtggaacc gaaatagtcg agccgatcgt
     2341 tcagtgtcac cgcgatgcat ggaccagtat gcaatccggc tttcaactgt agcggcatgg
     2401 tcccatcggg cggttgcgag ag
//
LOCUS       DASWTX010000347         2605 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_330782, whole genome shotgun sequence.
ACCESSION   DASWTX010000347 DASWTX010000000
VERSION     DASWTX010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2605
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330782"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..462
                     /locus_tag="VGD38_05415"
     CDS             <1..462
                     /locus_tag="VGD38_05415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727489.1"
                     /translation="RSKDYFDNATPSGNSVAAAVLLRLAILTSNERYRELAEKVLAII
                     ADQARRYPSGFGYALSAADFLLSSPKEVAIVGKDERDLQPLLKETWRKYLPNKVVAPG
                     VITESDALGSIPLLENRPLLDDRATAYVCQHYVCHQPVNDVQALAAELDEI"
     gene            542..2488
                     /locus_tag="VGD38_05420"
     CDS             542..2488
                     /locus_tag="VGD38_05420"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEY0727490.1"
                     /translation="MKFSSPATALLAAVSSVSLALLLLDKGIAIVLVAVLISALFYLA
                     YSFNEKRLRELSDAEAERRRHAEEMATIHMNTIESLAIAIDAKDQTTHGHVRRTQIYA
                     TQMGKLFKVSENDLSALHAGALLHDIGKLAVPEYILNKPGKLTEAEFAKMKIHPTVGG
                     DILKRVNFPYPVEDIVRYHHEKWDGSGYPKGLKGEQIPLIARIISVVDFYDATRCDRP
                     YRKGMKREDSLALLNSMVGSAFDPKVVKIFAEHVEEFDRLIDSEDIQEQVASASVIDT
                     ETSTKPDAGLASDILGTPIEESTGFRSISEAQREVFALHEIAQTIGSSLNLSDTVTLV
                     ANKLKSIVPFDSCVIFLVDERTGKAVAAHAVGEESELFSSRRITVGDGITGWVIANGR
                     SMCNASPELDMVGISDQIAKRFRGVLVSPLLREDGAFGAISLYSQSRTSYTTEHVRLL
                     ESVCQHASSALNNALTYEKTRESALVDPLTELPNARGFYMMLEQRIAECQRMNRESLA
                     VLSMDLDDFKVINDQYGHSIGDRLLASVAGVVRRELRQMDILTRYAGDEFVAIMPMAS
                     SKMAASIADRVRNAVEEQLFSVRNGTMIGLGVSIGVACFPEDGETSEELLTAAARRMQ
                     RDKHSRKTILTVAGAGVSSIDMMT"
BASE COUNT          558 a          776 c          743 g          528 t
ORIGIN      
        1 cgctcgaagg attattttga taacgccacg ccgtcgggga attccgttgc ggcggccgtg
       61 ctgttgcggc tcgcgattct cacgagcaac gagcgatacc gcgagctggc agaaaaagtt
      121 ttagccataa tcgccgatca ggcgcgccgt tacccgtccg gttttggcta cgcactctcg
      181 gccgcggact tcctgctctc cagtccgaag gaggtcgcca tcgtcggcaa agacgaaagg
      241 gatcttcaac ctctccttaa agagacgtgg cgcaagtatc tgccgaataa agtagttgct
      301 cccggcgtaa ttactgaatc agacgcactc ggttcgattc ccctccttga gaaccggccg
      361 ctactcgacg accgcgccac agcttacgtc tgccagcatt acgtctgcca ccagcccgtg
      421 aacgacgtcc aggctctagc cgccgagctt gacgagatct aagcgaaaag cctatagtta
      481 tgcacgtgcc aacactgttt ggcacgtgcc caaacctggt tccttgccgt ttcgccccat
      541 tatgaaattc agcagtccgg ctacagctct acttgctgcc gtttcgtcgg tcagtctcgc
      601 actgctcctg ctcgacaagg gcattgccat cgtgctcgtt gccgtcctga tctccgccct
      661 cttctatctc gcttacagct tcaacgaaaa gcgcctgcgc gaactgagcg acgccgaagc
      721 cgagcgccgc cggcacgccg aagagatggc cacgattcac atgaacacga tcgagtcgct
      781 ggcaatcgcc atcgacgcga aggaccagac gactcacggt cacgtgcgcc gcacgcaaat
      841 ctatgcgacg cagatgggca agcttttcaa ggtctctgaa aacgatctga gcgcgctgca
      901 tgcgggagcg ttgttgcacg acatcggtaa gctcgcggtg ccggagtaca ttctcaacaa
      961 acctggcaag ctcaccgaag cagagttcgc caagatgaag attcatccga ccgtcggcgg
     1021 cgacattctc aagcgcgtca acttccctta cccggttgaa gacatcgtgc gctatcacca
     1081 cgagaagtgg gacggcagcg gttatccgaa agggctcaaa ggcgaacaga tcccgctcat
     1141 cgcgcgaatc atttcggtcg tcgacttcta cgacgcgacg cgctgcgatc gcccgtatcg
     1201 caagggcatg aagcgcgagg attcgctggc gttgctgaac agcatggtcg gctcggcatt
     1261 cgatccgaag gtcgtgaaga tttttgccga acacgtcgaa gaattcgacc ggttgatcga
     1321 ttcagaagac attcaggaac aggtcgcttc agcgtccgtg atcgacacgg aaacaagcac
     1381 caagcccgat gcgggtttgg cttcagacat tctcggcacg ccaatcgagg agtcgaccgg
     1441 gttccgttcc atttccgaag cgcaacgcga agtgttcgcg cttcacgaaa tcgcgcagac
     1501 gatcggttcg tcgctcaact tgagcgacac ggtcacgctg gtcgcgaaca agttgaagtc
     1561 gatcgttccg tttgatagct gcgtgatctt tttggtcgac gaacgaacgg gcaaggcggt
     1621 tgcggcgcat gcggtcggtg aagaatcgga attgttttcg agccggcgca tcactgtcgg
     1681 cgacggcatt accggttggg tgatcgccaa cggccgctcc atgtgcaacg cgtctccgga
     1741 actcgacatg gtcgggatct ccgatcagat cgcaaaacgt tttcgcggtg tgctggtgtc
     1801 gccgttgtta cgcgaagacg gcgcgtttgg agcgatctcg ctttattcgc aaagccgcac
     1861 ctcttacacg accgaacacg tgcgcctgct ggaatcggtt tgccagcacg cctcgagcgc
     1921 gctgaacaac gcgttgactt acgaaaagac ccgcgagagc gccctcgtcg atccgttgac
     1981 ggaactgccg aacgcgcgcg gtttctacat gatgctcgag cagcgtattg ccgagtgcca
     2041 gcgaatgaac cgcgagtcgc tcgcagtgct ctcgatggac ctcgacgatt tcaaagtcat
     2101 caacgaccag tacggccact cgatcggcga tcggttgttg gcgagtgtgg cgggtgtcgt
     2161 gcgccgcgaa ctgcgccaga tggacattct cacgcgttac gccggcgacg agtttgtagc
     2221 gatcatgccg atggcgtcga gcaagatggc cgcttcgatt gccgaccgcg tgcggaacgc
     2281 tgtcgaagag caactgttct cggtccgcaa tggcacgatg atcggtctgg gcgtgagtat
     2341 cggcgtcgcc tgtttccctg aagacggaga aaccagtgaa gaattactaa cggccgccgc
     2401 ccgccgcatg cagcgcgaca agcacagccg caaaacaatt ctcaccgtag ccggcgccgg
     2461 cgtcagctcc atcgacatga tgacctaacg ccgaaggcgt tcgctagttg gagcccaggg
     2521 ttggcacaac cctggggaac ataacgaacg gttcatttcc aacgctgaaa gcgttcgcga
     2581 ctcgcgccaa cgctttcagc gttag
//
LOCUS       DASWTX010000348         1896 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_90793, whole genome shotgun sequence.
ACCESSION   DASWTX010000348 DASWTX010000000
VERSION     DASWTX010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1896)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1896)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1896
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90793"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1227
                     /locus_tag="VGD38_05425"
     CDS             <1..1227
                     /locus_tag="VGD38_05425"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEY0727491.1"
                     /translation="ETTKPKAAKPVKVKAVESHSSPNNVRYSASIRPAAQVEVAFKVS
                     GYVDNIAREKDPAGQWRYIQAGDVVHKGATLARVRQSDYAARVNEAKSQIGEARSALD
                     ANHSQLHEAIAAVDTARAQVNDAKATFERNKLDYERAKILFSSESITKPEYDATKAQY
                     EVAEAKYEAARGQLKAAEARVATAQAQISAGESRIRTAEATTASAAIPLQDTQLRAPM
                     SAVVIERKVEMGTLVGQGSAAFVLADLSYVKAAFGVPDTSLKSLKLGDTLTITSDATP
                     GTEFHGHISRISPSADQNSRAFEVEVTIPNEQGLLKPGMIASLNTNEGPIELASALVV
                     PLTAITHTRENANAYAVLVMEEREGKQFVRMRPVTLGESVGNAIVITSGLQAGEMVVT
                     TGVTQVTDGEQVSVVQ"
     gene            1265..>1896
                     /locus_tag="VGD38_05430"
     CDS             1265..>1896
                     /locus_tag="VGD38_05430"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY0727492.1"
                     /translation="MSHGKTDEQMMNQRNTARFFVEKRHVSWVLLIATCIWGIYGYIR
                     MPQRKDPEIQVRTAVALVPWPGANAEKVEQLVTKKVEEQMAANAKVTKIESISRTGLA
                     VIYLELDENLKETGKELDDIKLKLDAIHDLPSGAGPINFIKDFGDTAALMLTVASPKT
                     DEAEITRRAQSVQAAIEKERAATINPADPSRFTLVFTVAQSVDDRLLRTP"
BASE COUNT          461 a          538 c          601 g          296 t
ORIGIN      
        1 gaaaccacga agccgaaagc cgcgaaaccc gtgaaggtca aagctgttga gtcgcactcg
       61 tcgccgaaca acgtgcgtta ctcggcgagt atcaggcccg cggcgcaggt tgaggtcgcg
      121 ttcaaagtga gtggttacgt cgacaacatc gcgcgtgaaa aggatccggc gggtcagtgg
      181 cgttacatcc aggccggcga cgtcgtgcac aagggtgcga cgctcgctcg cgtgcgccag
      241 agcgattacg cagcgcgtgt gaacgaagcg aaatcgcaga tcggtgaagc gcgttcggcg
      301 ctcgatgcga atcactcgca actgcacgaa gcaatcgccg cggtggacac tgcgcgcgcg
      361 caagtgaacg acgcgaaggc aacgttcgag cggaacaagc ttgattacga gcgcgcgaag
      421 attctcttca gctcggaaag catcacgaag cctgaatacg acgcgacgaa agcgcagtac
      481 gaagtagcgg aagcgaaata cgaagccgcg cgaggacagt tgaaagccgc ggaagcgcga
      541 gtcgccacgg cgcaggcgca gatctccgcc ggcgaatcga gaatcaggac cgcggaagcg
      601 accacagcgt ctgccgcgat cccgcttcag gatacgcaac tgcgggcgcc gatgagcgcg
      661 gtcgtgatcg aacgcaaagt cgagatgggc acgctcgtgg gccagggttc ggcggcgttc
      721 gtgctggcgg atctgagtta cgtgaaagcg gcttttggcg tgccggatac gtcgctcaag
      781 agtctcaagc tcggcgacac gttgacgatc acgagtgacg cgacaccggg aacggaattt
      841 cacggacaca tctcgcgcat ctcgccttca gccgatcaga acagccgcgc gtttgaagtg
      901 gaagtcacga ttccgaatga acaggggctc ttgaaaccgg gaatgatcgc ttcgctgaac
      961 acgaatgaag gaccgatcga actggcttcg gcgttagtcg taccgcttac ggcaattaca
     1021 cacacccgcg agaacgcgaa cgcgtacgcc gtgttggtga tggaagagcg cgaaggaaaa
     1081 cagttcgtgc gcatgcgccc cgtcacgctc ggcgaatccg tcggcaacgc gatcgtcatc
     1141 acgagtggat tgcaggcggg cgaaatggtc gtcaccacag gcgtcactca ggtgaccgat
     1201 ggtgaacagg tatcagtggt ccagtagaga tcacagctag aaatcgagat cgaggagaga
     1261 agacatgtct cacggaaaga ccgacgaaca gatgatgaac caacgcaaca ctgcgcggtt
     1321 ctttgtcgag aagcgtcacg tcagttgggt gttactcatc gcgacgtgca tctggggcat
     1381 ctacggctac atccgcatgc cgcagcgcaa agaccccgaa atccaggtgc gcacagcggt
     1441 ggcgctggtg ccgtggcccg gcgcgaacgc ggagaaggtc gaacaactgg tcaccaagaa
     1501 agtcgaagag cagatggcgg ccaacgccaa ggtgaccaag atcgaatcga tctcgcgcac
     1561 cggcctcgcg gtcatctatc tcgagctcga cgagaacctg aaagagaccg gcaaggaact
     1621 ggacgacatc aagctgaagc tcgacgcgat ccacgatctg ccgagcggcg ctggtccaat
     1681 caacttcatc aaggacttcg gcgacacggc cgcgttgatg ttgaccgtgg cgagtccgaa
     1741 gaccgacgag gcggaaatca ctcgccgcgc tcaaagcgtg caagcggcaa tcgagaaaga
     1801 gcgcgcggcg acgatcaatc cggccgatcc gtcgcgcttc acgctcgtgt tcacggtcgc
     1861 tcaatccgta gacgatcgcc tgctgcgcac gccgat
//
LOCUS       DASWTX010000349         2237 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_374077, whole genome shotgun sequence.
ACCESSION   DASWTX010000349 DASWTX010000000
VERSION     DASWTX010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2237)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2237)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2237
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_374077"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..363
                     /locus_tag="VGD38_05435"
     CDS             <1..363
                     /locus_tag="VGD38_05435"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0727493.1"
                     /translation="VVEDELDALDLLAVDLREHGAEVTGVASASEALELLGREHFDLL
                     ISDIGMADTDGYSLIKQIRKQENSEEERIPAIALTAYARAQDRLRAISAGYNSHVAKP
                     VDIRELVSVVKCLTGKTG"
     gene            457..1008
                     /locus_tag="VGD38_05440"
     CDS             457..1008
                     /locus_tag="VGD38_05440"
                     /EC_number="3.2.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005934810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008725 - DNA-3-methyladenine glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HEY0727494.1"
                     /translation="MTKRCFWATTPLSIAYHDKEWGVPVHDDTRLFEFLILEGAQAGL
                     SWETILRKRDNYRAAFDRFNPARVAKYDERKIAELLNNEGIIRNRLKINSAVTNAIAF
                     REVQREFGSFDNYVWRFVDGKPIRRKRGEPIVATTPISDQLSKDLLKRGFKFVGSTIC
                     YSFMQAVGMVNDHDSICFRYREV"
     gene            1005..1376
                     /locus_tag="VGD38_05445"
     CDS             1005..1376
                     /locus_tag="VGD38_05445"
                     /inference="COORDINATES: protein motif:HMM:NF012417.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY0727495.1"
                     /translation="MNKINLQEKLSLINDHWNPRIAAELNGQYVKLVKFQGPFTWHHH
                     ENEDELFMVVRGRFRMEYREAGAEQSVWLEPGEMIVVPRGVEHRPVADEECEVLLFEP
                     VSTLNTGNTENELTRKELSHI"
     gene            1399..>2237
                     /locus_tag="VGD38_05450"
     CDS             1399..>2237
                     /locus_tag="VGD38_05450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727496.1"
                     /translation="MNTRSLKLWLTAALAIPFLMSAALAQSVTTSLASLPDADLLIYV
                     SPQRFLNDAAPRIMPAKDITEMRNGFAEMKKTVGIDPSTVEYLVLAVRFHKPAGDLSF
                     VAPDVMAVIGGDFSADSLFSLAQLTLQDKVRIEKHGSKTMALMRLDAIAAQAEKMPLL
                     KSFVEVGAVPLSANSIAIGNLPYLKSAIDAADGTGRINPATLESLMRDPNVLAAGAGT
                     PLASFAKALGLFGTETSAREGTCNTSFGNFYSALTLSGTNFSVRGAMNADNPDTAKII
                     SSLL"
BASE COUNT          502 a          670 c          621 g          444 t
ORIGIN      
        1 gtggtggaag acgaactcga cgcgctcgac ctgctcgccg tcgatctgcg cgagcacggc
       61 gccgaggtca ccggcgtggc gtccgcttct gaagcactcg aactactcgg cagagaacat
      121 ttcgatctgc tcatcagcga catcggcatg gccgacacgg acggctacag cctcatcaag
      181 cagatccgca aacaggaaaa ctcggaagag gaacgcattc ccgccatcgc gctgacggct
      241 tacgcgcgtg cgcaagaccg gctgcgggcg atttccgccg gttacaacag tcacgtcgca
      301 aaacccgttg acatccgcga gctcgtttcc gtggtaaagt gtctaaccgg caaaaccggc
      361 taatcattta acgccgaatg cgcccgtttt gagttcaagc tctagcctgc ctgtctggga
      421 acaacctaaa ggttgaatcc agaacggttc gacctgatga ccaagcgctg cttctgggct
      481 acaactccct tatcgatcgc ctaccacgac aaagagtggg gcgtgcctgt tcacgacgac
      541 actcgcctgt ttgagttttt gatcctcgaa ggagcgcagg ccggactgag ttgggaaacg
      601 attctgcgca agcgcgacaa ctaccgcgcg gctttcgacc gtttcaaccc ggcgagggtc
      661 gccaagtatg acgaacgcaa aatcgccgaa ctgctgaaca atgaaggcat catccgcaac
      721 cgtttgaaga tcaactcggc ggtcacaaac gcgatcgctt ttcgcgaagt gcagcgtgag
      781 tttggcagtt ttgacaatta cgtctggcgc tttgtcgacg gcaaaccgat ccggcgcaaa
      841 cgcggagagc cgatcgtcgc caccacgccg atctcggatc agttgagcaa agacctgctg
      901 aagcgcggct tcaagtttgt cggctcaacg atctgttact cgttcatgca ggcggtggga
      961 atggtcaacg atcacgattc aatctgcttt cgctatcgtg aagtatgaac aagatcaatc
     1021 tgcaagaaaa gctttcgctg attaacgatc actggaatcc tcgcatcgcc gcggagctga
     1081 acggccagta cgtgaagctc gtgaagtttc agggcccgtt cacctggcat catcacgaaa
     1141 acgaagacga gcttttcatg gtcgtacgag gccggttccg gatggaatac cgcgaagccg
     1201 gcgctgaaca gagtgtctgg ctcgagcccg gtgaaatgat cgtcgtgcct cgcggcgtcg
     1261 aacaccggcc cgttgccgac gaagagtgtg aagtgctgct cttcgagccc gtttccacgc
     1321 tgaacaccgg caacaccgaa aacgaactca cgcgcaaaga actgtcgcac atttaacaca
     1381 tcgactttgg aggtcacctt gaatacccgt tccttaaaac tgtggctgac ggccgcgctc
     1441 gcaatcccct ttttaatgtc cgccgccctg gcccaatccg tcacgacgtc cctcgccagt
     1501 ctgcccgacg cggacctgtt gatctacgtc agtccgcaaa gatttctgaa tgacgcggcg
     1561 ccgagaatca tgcccgcgaa agacatcacg gagatgcgca acgggtttgc cgaaatgaag
     1621 aagacagtgg gcatcgatcc ctcgacggtc gagtatctcg tgctcgcggt gcgctttcac
     1681 aaaccggccg gcgatctgag ttttgtggcg ccggacgtga tggccgtcat cggcggagac
     1741 ttcagtgctg actccctctt ctcgctggcc caactaacgc tccaggacaa agtgcggatc
     1801 gaaaaacacg gctcgaagac gatggcactg atgcgacttg atgcgatcgc cgcccaagcc
     1861 gaaaagatgc cgctgctcaa gtcgttcgtg gaagtcggcg cggtgccgtt gagcgcaaac
     1921 tcgatcgcga tcgggaatct gccttatctc aagtcagcga ttgacgccgc cgacggcact
     1981 ggccggatca atcccgcgac actcgagtcg ttgatgcgcg atccaaacgt gctcgccgcg
     2041 ggcgcgggca ctccgctggc gtcgttcgcg aaagcactcg gcctgttcgg cactgagacc
     2101 tcggcgcgtg aaggtacttg caacacgtct ttcggcaact tctactcggc cctgacactc
     2161 tcgggaacca acttcagcgt tcgcggcgcg atgaatgccg acaatcccga caccgcgaag
     2221 atcatcagca gtttgct
//
LOCUS       DASWTX010000350         2184 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_70543, whole genome shotgun sequence.
ACCESSION   DASWTX010000350 DASWTX010000000
VERSION     DASWTX010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2184
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70543"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2184)
                     /locus_tag="VGD38_05455"
     CDS             complement(<1..>2184)
                     /locus_tag="VGD38_05455"
                     /inference="COORDINATES: protein motif:HMM:NF012901.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase domain-containing protein"
                     /protein_id="HEY0727497.1"
                     /translation="GIGGHYQEGGIISPDGHCRAFDANARGTVKGSGAGVVVLKRLAD
                     AIHDRDTIHAIIKGSAINNDGAMKVGFTAPAVEGQANVIEEALALASIEPETIGYVET
                     HGTGTVLGDPVEIAALTQAFRTSTDATGFCPIGSVKTNIGHLDAAAGVASLIKTILAL
                     EHGQIPPSLNFEQPNPNIDFANSPFFVNTELRRWETNGVPRRAGVSSFGIGGTNAHVV
                     LEEAPPSESFEASKAPHVLVLSARTPTALAQLSKNVAQHLEQHSEIDLADVAYTLSAG
                     RKQFEHRQVVVCHDAADAITALSERDRSRVFTGASKYEKRPVAFMFPGQGAQYAGMGR
                     ALYEREPVFQSELDHCAELLRDSLGADLREVIFESEVLSDTRFTQPALFAVEYALAKL
                     WAEWGVVPQAMIGHSIGEYVAACLAGVFSLEDALRLVAARGEIVQRLPRGAMLSASLA
                     PHEAEHHLSEHISIAAFNSPSLCVLSGTMEAIDELEQRLAGEGVICRRLHTSHAFHSQ
                     MMEPATEEFTALVRSVERRAPQIPYLSNVTGQWITEAEVTDPSYWARHLREPVQFSAG
                     VAKLLNDPAIVLLEVGPGQSLGTLAAQQPAPDRVALASLRPPKGEESEIEFLLKTVGR
                     LWLAGVEIDWSRFYAGQSRRRVQLPSYPFERQRYWIDPENLTYEVESATLFENVETFS
                     SVAEVETAVIDIWRELFGIANIRPHDNFFDHGGNSLIALQLVAQLR"
BASE COUNT          445 a          690 c          600 g          449 t
ORIGIN      
        1 gcggagttgg gccacgagct gtagcgcgat gagtgagtta ccgccgtgat cgaagaagtt
       61 gtcgtgcgga cgaatgttcg cgattccgaa aagctcgcgc cagatgtcga tcaccgcggt
      121 ttcgacttcg gccacagagg agaatgtttc gacgttttcg aaaagcgtcg cactctcaac
      181 ctcgtaggta aggttttcag gatcgatcca ataacgctgg cgctcaaacg gatacgacgg
      241 gagttgcact cgccgccgtg actgaccggc ataaaacctg ctccagtcga tctccacgcc
      301 cgcgagccac aaccgcccaa ccgtcttcag cagaaactcg atctctgatt cttcaccttt
      361 cggcggacgc aacgaagcaa gcgccacgcg atccggcgcc ggttgttgcg cggccagtgt
      421 tcccagcgac tggcctggtc caacttccag caacacgatt gcgggatcgt tcagtagctt
      481 cgcaacgccg gcagaaaact gtacgggctc gcgcagatgc cgggcccagt aagagggatc
      541 tgtaacttca gcttcagtga tccactgtcc cgtcacgttc gagagatacg gaatctgcgg
      601 cgcgcgtcgc tcaacgcttc gaacgagcgc cgtaaactct tccgtcgcgg gttccatcat
      661 ctgcgagtga aacgcatgtg acgtgtgaag ccgccggcaa atcacgcctt cgccggcgag
      721 ccgttgttcc aactcgtcga ttgcttccat cgtgccggac agcacacaca gtgatggtga
      781 gttaaaggcg gcgatcgata tgtgttcgct caaatgatgt tcagcttcgt gcggtgcgag
      841 cgaagccgac agcatcgcac cgcgcgggag ccgctgcacg atctcgccgc gcgcagccac
      901 gagccgcagt gcatcctcga gtgaaaagac gccggccaga cacgccgcga cgtattctcc
      961 gatgctgtgt ccgatcatcg cttgcggcac gactccccat tcggcccaca acttcgccaa
     1021 cgcgtactcg acggcgaaca acgccggttg cgtaaagcgt gtatcggaga gaacctcgct
     1081 ctcaaaaatg acttctctta gatctgcacc cagcgagtcc cgcaagagtt cagcgcagtg
     1141 gtccaactca ctttggaaca ccggctcacg ttcgtacaac gcgcgtccca ttccggcgta
     1201 ttgcgctcct tgtccgggaa acatgaacgc cacgggccgt ttttcatatt tcgacgcgcc
     1261 cgtgaaaaca cgcgaacgat ccctttcaga caatgctgtg atcgcgtcag ccgcgtcgtg
     1321 acacacgaca acctgacgat gctcaaactg cttcctgccg gcgctcaacg tgtacgcaac
     1381 gtcggcgaga tcgatctcgg aatgttgctc cagatgctgt gcgacgtttt tgcttagctg
     1441 tgcgagcgca gttggtgttc gcgctgacaa cacgagaaca tgaggcgctt tcgaagcctc
     1501 aaaactctca ctcgggggcg cttcttccaa cacaacgtgc gcattggtcc cgccgatgcc
     1561 gaacgaactg acgcctgcgc gtcgcggcac gccattcgtt tcccaacgac gcaattctgt
     1621 attcacgaag aacggactgt ttgcgaaatc gatgttcggg tttggttgct caaaattcag
     1681 actcggcgga atctgcccgt gctcgagcgc gagaatcgtc ttgatcagac tcgccacgcc
     1741 cgccgcggcg tcgagatgtc cgatgttggt tttgaccgac ccgatcggac aaaacccagt
     1801 cgcgtcagtg ctcgtgcgaa acgcttgcgt cagcgcagcg atctcaaccg gatcgcctaa
     1861 cactgtgcca gttccgtgtg tctcgacgta cccgatcgtc tccggctcga tcgacgctaa
     1921 cgcgagcgcc tcttcgatca cattcgcctg gccttcaaca gccggcgccg tgaagccaac
     1981 cttcatcgcg ccgtcgttgt tgatcgccga gcccttgatg atcgcgtgaa tggtatcgcg
     2041 atcgtgtatc gcgtctgcga gccgcttcaa cacgacgaca ccggcgccgc ttcctttcac
     2101 cgtcccgcgc gcgttcgcgt cgaacgcgcg gcagtgtcca tcgggagaaa tgatcccgcc
     2161 ctcctggtaa tgaccgccga tgcc
//
LOCUS       DASWTX010000351         5783 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_264103, whole genome shotgun sequence.
ACCESSION   DASWTX010000351 DASWTX010000000
VERSION     DASWTX010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5783
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_264103"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..180)
                     /locus_tag="VGD38_05460"
     CDS             complement(<1..180)
                     /locus_tag="VGD38_05460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727498.1"
                     /translation="MKSIQETYAPNLACFGCGPANPKGLHIRSFADGDEVVAEWQPSK
                     EYEAFEGMLSGGIIGT"
     gene            complement(177..1673)
                     /locus_tag="VGD38_05465"
     CDS             complement(177..1673)
                     /locus_tag="VGD38_05465"
                     /inference="COORDINATES: protein motif:HMM:TIGR02262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016405 - CoA-ligase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="benzoate-CoA ligase family protein"
                     /protein_id="HEY0727499.1"
                     /translation="MNLFEAIFAHDSAAPAINFSGREISYGELRVQTLQMAAAITSLG
                     VQRGDRVALLLHDSPEFVEAFIATCSLGAIAVPINMALRLEEQRSILHNCSATLALVE
                     PELRSTFLTHAPETLRSPEKIVTVESLPRVETPEAVDFPAPRDDEPAFILYTSGSTGE
                     PKGAVHTQADVFYTNQTYCREVLRIKPHDRLFSSSRLPFAYGLGNSFTFPLLNGATSI
                     LCREKPSPDVIARTFVECHPTIFFGVPVVYNLLLEHHRNKEPLDCSSLRLCISAGEAL
                     PAHLGEEWENTFGVQLLDGIGSTEMLHMFMSNHENDVRYGSSGKLLEGYEARLLDERG
                     DPTPDDVEGNLWIKGDSASLGYWEKPEVSERTFVDGWVRTGDLYRRDAQGFWYHMGRS
                     DDCFKSSGPWGSPVEVEGALLRHPQVARAAVVEDFDAGGLPCPCAFVVAQELESDTRG
                     LEQQLRESLATALPRFKQPRRYVFVSELPYTATGKIQRFKLRQSLRKQ"
     gene            1740..>5783
                     /locus_tag="VGD38_05470"
     CDS             1740..>5783
                     /locus_tag="VGD38_05470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727500.1"
                     /translation="MEILILLILLLFCFGIIGIVGLSIIGLIRWVTKPNSPPPVVERR
                     ESDLVVFERQLIRFYREGKINDEVYEFLLSRIRAEREPVFKPPTTTRPPEPAVPRSVV
                     IDIERERPPEPIPAPAYSRPQPPPPPRQPPPPPPPPRRPFSEVLNSFMEESNIRWGEI
                     IGGLLIIGCSTALVVSLWAQISQIPVLKFLIFTTVTAILFGVGLYTEHRWKLPTTSRG
                     ILTIATLLVPLNFLAIAAVSASNTPGALALGSELAAPAIFLCLVYFAGRVITPGCAHI
                     LAAGVLGSSIGQLLVRHFAAPDASPALLILLAAFPVACYIVTVGMALRMVLSDREIDA
                     TETGTVFTVLGTMSFAALLPFGLLLYKSGPLSLTMMYLAPIVTLWGLPMLATGTVLWR
                     RIKNRELVASRTTGTALGILGLMIVLSGMLLSWPNPASIVPAALLNFAIFTALAITLR
                     LPVAHLIAANCLALAYLIVFHVLAGHVAWRNLRVSSLVEVVLSLPTAQALAGAFVIFL
                     IVNEWLGRKKFVRDSYYYLVAACEIAVLSLALLALFGFWSSDNDWLWVVLTIYALGGF
                     WITWRRNQQAFAWIASTVLLFAFADLFSRTLAFSFPWQTAWLTHATICIAAAIVITTR
                     FRHAEILVKPLNYSALFAVVFGVVALFQANTWEVTAMQAQRVFWIAGILLLLLWLNRR
                     RLILNAFEIALLCAIVLTVKASLQEFAWYSYVPLAFLRPAALQIYGTVLALFCLAWIG
                     LRFVVKRAIEKTGDAPRNGWLHDAARLLNTDYSIDRLLSWLLLGAFMLFAVYGALSGL
                     TRELLALGAGYAGLNIAGFAHQETIALGSWVLLGLLTVLMLANYAEKRREEYLLAALV
                     VISGAIPLLAGRFEPQMATSAAWRWLAAFFLLAGSIVLWYRRDGTATMRRLLIALTVA
                     PLLLFTLVPALRAIYYLPVQSPVAGIFAWFSDDVLYGGPLLLVALVMIGYAVRERIPD
                     YGVYGGFLINLTVTLAFMLAVVSGRGLMDRVVLVRLAQLNAITFAVYALPWLSTRRLW
                     QQKLDQQGQKLADKLLGLQVWLAIGLNVVLIAPVALGLIVEPEPPGIGTIATGTLLGW
                     LALATTVIAAAWLSRTRARRPSAELLAGGLMAVSCLIAFTVADIDGWLGLHVMTVCVT
                     VSAWLMLLAAESDTLWQRRGRQLAAVIGGIAAFLSLRTSVDTDANGWWSVGPLLALSV
                     LFAALNWQTLRRRYIYAAGMLIPFAALIGCLRFLPFSWRDGTFAIIIIANCIAAIALL
                     WLELRARRLSDAENPRSTALSFHNLGAIGWPLLLAFLVAVSPGFGRHHSPIATMPALH
                     WVAWLATVALMAAVLWDRHAKYAVAGLY"
BASE COUNT         1004 a         1710 c         1735 g         1334 t
ORIGIN      
        1 ggtgccgata atgccgccgc tcaacatccc ttcaaaggct tcgtattcct tgctcggctg
       61 ccactcagcg accacctcat ccccatccgc aaagctgcga atgtgcaaac ccttcggatt
      121 ggccggaccg caaccgaaac acgcgaggtt cggagcgtac gtttcctgaa tacttttcat
      181 tgtttacgca acgattgtct taacttaaac cgctgaatct ttcccgtcgc cgtgtagggc
      241 aactccgaaa cgaacacata ccggcgcggc tgtttgaaac gcggcaacgc cgtcgcgagc
      301 gactcgcgca actgttgctc cagcccgcgt gtgtcggatt ctaactcctg agcgacgaca
      361 aacgcacacg gacacggcaa tccaccggcg tcgaaatcct cgaccaccgc cgcgcgcgcg
      421 acctgcggat gccgcaacaa tgcgccttcg acctccaccg gcgaccccca cggcccgctc
      481 gacttgaaac agtcgtcgct gcgacccatg tgataccaga agccttgcgc atcgcggcgg
      541 tacagatcgc ccgttcgcac ccagccgtcg acaaacgtgc gctcgctgac ttccggcttc
      601 tcccagtaac cgagcgacgc gctgtcgccc ttgatccaaa gattgccttc gacgtcgtca
      661 ggtgttgggt cgccacgttc atccagaagc cgtgcttcgt agccttcgag caatttgccg
      721 ctgctgccgt aacgcacgtc gttttcgtgg ttcgacatga acatgtgcag catctccgtc
      781 gaaccgatgc cgtcgagcaa ctgcacgccg aaagtgtttt cccactcttc accgagatga
      841 gccggcaatg cttcgccggc cgagatgcac aagcgcaagc tcgagcaatc gagtggttcc
      901 ttgttgcgat ggtgttcgag caggaggttg tacacgacgg gcacgccgaa aaagatcgtc
      961 gggtggcact cgacaaacgt tcgcgcgatc acgtccggcg acggcttttc gcgacagaga
     1021 atggaagtgg cgccgttcag caacgggaac gtgaaactgt ttccgagacc gtaagcgaat
     1081 gggagccggg aagaagagaa gagccgatcg tgcggtttga tccgaagcac ttcacggcag
     1141 taagtctggt ttgtgtagaa gacgtcagcc tgtgtatgaa cggcgccctt tggttcgccg
     1201 gtgctgccgg acgtgtaaag aatgaaggcg ggctcgtcgt cacgcggcgc cggaaagtcc
     1261 accgcttccg gcgtctcgac ccgcggcaaa gactcgacgg taacgatctt ttcaggcgaa
     1321 cgcagcgttt ccggcgcatg tgtcaggaaa gtgctgcgta gttcgggctc gacgagcgcc
     1381 aatgttgcac tacagttgtg aaggattgaa cgctgctcct caagccgcag cgccatgttg
     1441 atgggaacgg cgattgcccc gagcgaacat gtggcaatga aggcttcaac aaactccggt
     1501 gagtcgtgca aaagcagcgc aacgcggtcg ccgcgctgga cgccgagtga ggtgatcgcc
     1561 gccgccatct gcaaagtctg cacgcgcaat tcgccgtatg aaatttcccg gccgctgaag
     1621 ttgattgcgg gcgcggccga atcatgagcg aaaatagctt cgaacaggtt catcgcaaac
     1681 gttatactcc agtccggccc acatggtcac ccggcgtccc ggctcgaggg tgagtcacga
     1741 tggaaatctt aatcctcctg atcctgctgc tcttttgctt cggcatcata ggcattgtcg
     1801 gtctgtctat tatcgggctg atacgctggg ttactaaacc caattcgccg ccgccggtcg
     1861 tcgagcgacg tgagagcgat ctcgtcgtct tcgaacgcca actcattcgc ttctaccgtg
     1921 aaggcaagat caacgacgag gtttacgagt ttctgttgtc tcgtattcgc gccgagcgcg
     1981 aaccagtttt caaaccgcca actactacca gaccgcctga gcccgcagtc cccagatccg
     2041 ttgtcattga catcgagcgc gagcgaccgc cggagccaat ccctgcccct gcttactcac
     2101 ggccgcaacc tccaccacca ccacgacagc cacctccacc acctccgcct ccaaggcgtc
     2161 ctttcagcga agtgctcaac tccttcatgg aagagtcgaa catccgctgg ggcgagatta
     2221 tcggcggcct gttgatcatc ggctgttcga ccgcactcgt tgtaagcctg tgggcacaga
     2281 tctcgcaaat cccagtgttg aagtttttga tcttcaccac tgtcaccgcc attctcttcg
     2341 gcgtcggtct ttataccgaa caccggtgga aacttccgac cacgagccgc ggcattctga
     2401 cgattgcgac gttactcgtg ccgctgaact ttctcgcgat cgccgcagtg tcagccagca
     2461 acacgccggg cgcgctcgcg ctcggcagcg agctggcggc gccggcgatc tttctttgtc
     2521 tggtctattt cgcgggacgt gtgatcacgc caggctgcgc gcatattctc gctgcgggcg
     2581 tgctcggctc gtcaatcgga caactactcg ttcgtcattt cgctgctcca gacgcttcac
     2641 ccgcgctctt gatcctgctc gccgcgttcc cggtcgcgtg ttacatcgtg actgtcggca
     2701 tggcgctgcg catggtgctg agcgatcgcg agatcgacgc aacggaaacg ggcacagtct
     2761 tcactgttct cggcacgatg agtttcgcgg cgctgctgcc gtttgggttg ttgctctaca
     2821 agtcaggacc gctgagtttg acgatgatgt acctcgcgcc gatcgtgacg ctgtggggac
     2881 tgcccatgct cgcgacgggc actgtattgt ggcggcgcat caagaaccgg gaactcgtcg
     2941 cttcacgcac gacaggaacg gcgctcggaa tcttgggctt gatgatcgtg ttgtcgggaa
     3001 tgctgctgtc gtggcccaac ccggcgagca tcgtgcctgc cgcattgctc aacttcgcaa
     3061 tcttcacggc gctggcgatc acgctcaggt tgccggtggc gcatctgatc gcggccaact
     3121 gtctcgcgtt ggcttacctg atcgtttttc acgtcctcgc cggacacgtg gcgtggagaa
     3181 acctgcgcgt ctcgtcgttg gttgaggtgg ttctctcgct gccaaccgcg caggcgcttg
     3241 cgggtgcgtt tgtcatcttc ctgatcgtca acgagtggct cggcaggaaa aagtttgtac
     3301 gcgacagtta ctactacctg gtggcggcgt gcgagatcgc ggtgttgagt cttgcgttgt
     3361 tggcgctctt tggtttttgg tccagtgaca acgactggct ctgggtcgta ctgacgattt
     3421 acgcgctcgg cggtttctgg atcacgtggc ggcgaaacca gcaggcgttt gcatggattg
     3481 cgagcacggt gttgctcttc gcgttcgccg atctgttttc gagaacgctg gccttttctt
     3541 tcccgtggca gacggcctgg ctcacgcatg cgacgatctg catcgccgcg gccatcgtta
     3601 tcaccacgcg tttcaggcac gcggaaatac tggtgaagcc actcaactac agcgccctgt
     3661 tcgcggtggt gtttggtgtc gtcgcattgt ttcaggcgaa cacgtgggaa gtcaccgcga
     3721 tgcaggcgca acgagttttc tggatcgccg gcatcctgct gcttctgctg tggctgaatc
     3781 gccgccgcct gatcttgaac gcgtttgaaa tcgcgttgct ctgcgcgatc gtgctgacgg
     3841 tcaaagcatc gttgcaggag tttgcgtggt actcgtatgt gccgctcgcg tttctgcgtc
     3901 cggccgcgct tcagatttac ggcactgtgc tcgcgctgtt ttgtctcgcg tggattggtc
     3961 tgcgtttcgt ggtcaaacgc gcgatcgaga agacgggaga cgcgccgcgg aacggttggc
     4021 tgcacgatgc cgcgcgtttg ctcaacaccg attactcgat cgatagattg ctctcgtggt
     4081 tgctgctcgg cgcgttcatg ctgtttgccg tttacggcgc gctctccgga ctcacgcgcg
     4141 aactgttggc gcttggcgcc ggctacgcgg gactcaacat cgccggattc gcacaccagg
     4201 aaacgatcgc gctcggctcg tgggtcttgc ttggcttgtt gacggtgctg atgctggcaa
     4261 actatgccga aaaacgccgt gaagaatacc tgctcgccgc gttggtcgtg atatcgggcg
     4321 cgatacctct gctcgccgga agattcgagc cacagatggc gacgtccgcg gcgtggcgct
     4381 ggctggcggc gttcttcctg ttggctggct cgatcgtgct gtggtaccgg cgcgatggaa
     4441 cggccacgat gcgccggctt ttgatcgctc tgactgttgc gccgctgttg ttgttcacgc
     4501 ttgttcccgc tcttcgagcg atctactact tgccggttca gagtcccgtc gcgggaatct
     4561 tcgcgtggtt cagcgatgat gttctttatg gtggtccact cctgctcgtc gcgctcgtga
     4621 tgattggcta cgcggtgcgc gagcgaattc ccgattacgg tgtctacggc gggttcctga
     4681 tcaacctgac cgtgacgctg gcgttcatgc tggcagtggt tagcggaaga ggattgatgg
     4741 accgcgtcgt gttggtgcgt ttggcccaac tcaacgcgat cacgttcgcg gtttatgcgt
     4801 tgccgtggtt gagcacgcga cggttgtggc aacaaaagct ggaccagcag ggacaaaagc
     4861 tcgccgacaa attacttggt ttgcaagtct ggttggccat tggtttgaac gtcgttctga
     4921 tcgcgccggt ggcgctcgga ttgatagtcg aacccgaacc tccgggcatc ggaacgatcg
     4981 cgaccggcac tctgctcggc tggttggcgc tggcgacgac agtcatcgct gcggcgtggt
     5041 tatctcgcac acgcgcgcgc cgtccgtcgg cggagttgct cgccggcggt ttgatggcgg
     5101 tcagttgttt gattgctttc accgtcgcgg atatcgacgg ctggctcggg ctgcacgtca
     5161 tgaccgtgtg cgtgacggtt tcggcgtggt tgatgttgct ggctgctgaa agcgacacgc
     5221 tgtggcaaag gcgtggccgc caactcgccg cggtcatcgg tggaatcgct gcattccttt
     5281 cgttgcgcac ctctgtcgac acagacgcga acggctggtg gtcggttgga ccactgctcg
     5341 cattgagcgt gctgtttgcg gcgttgaact ggcagacgct gcgccgccga tacatctacg
     5401 cggcgggcat gctcattccc tttgcggcat tgatcgggtg tcttcgtttt ctaccgttca
     5461 gttggagaga cggcaccttc gcgataatca tcattgcgaa ctgtattgcc gcaatcgcgt
     5521 tgttgtggct ggaacttcga gcccgccggt tgagcgacgc cgagaatccg cgctcgacag
     5581 cgttatcgtt tcacaatctg ggcgcgatcg gttggccgtt gctactggcg ttcttagtgg
     5641 cggtgagtcc tggttttggg agacaccatt caccgatagc gacgatgccg gcgctgcact
     5701 gggtcgcgtg gctggcgact gttgcgctga tggccgcggt tctctgggac aggcacgcga
     5761 aatacgcggt tgccggactc tac
//
LOCUS       DASWTX010000352         1942 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_242070, whole genome shotgun sequence.
ACCESSION   DASWTX010000352 DASWTX010000000
VERSION     DASWTX010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1942)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1942
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_242070"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..249
                     /locus_tag="VGD38_05475"
     CDS             <1..249
                     /locus_tag="VGD38_05475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727501.1"
                     /translation="LGYKESSHFLRNIGVKGHAILDKHVMRCLAEVGVIDSAKPPQTR
                     RKYLEVEQELIRFAKDIRVDFDELDLVLWSMKTGEILK"
     gene            328..1905
                     /locus_tag="VGD38_05480"
     CDS             328..1905
                     /locus_tag="VGD38_05480"
                     /inference="COORDINATES: protein motif:HMM:NF025034.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl protease family protein"
                     /protein_id="HEY0727502.1"
                     /translation="MFLTGTAQSVYASADKKAYNKGYRAARKGEYPQAEKIFRELLEK
                     DAHDIEARLGLSFTQLKQRNLQAAYDNAARVIMLDPLSARGHALLGTAILGAGEFRLS
                     VEEFRTALALNENEALAVAGLAMVDFYENRLNSAINGLRKAASMDPDEPDYVFSLGQA
                     AARSEKYREAADAYERFLIIAPKTDTDRRERILGLIAFLRYLGKQGSLYVPGGEERTS
                     IPFEATDNRPILQVRVNGSKEPLRFVLDTGSGMSVISEETAKRLNIRPVAKGGLARAV
                     GGGGKFEIVYGYLSSIEMGEVRVGSVPVYIRKFFDTNIPVDGYLGLSVISKFLAAVDY
                     GTRKMTLVRQNQSDQLEPWTVKRPEGMLSLVPLSPNDGSVEVPLRSTSSGFLSGEVTL
                     DGFDKSLNFIVDTAASITVISEKLSQEEHLLDLLQPSKMRVYGAAGVTDDVKLLQLPR
                     LSLGLSRLEKINAAVLDMEPVNETAGFTQSGILGGNFLRHFRIYFDFARGTMRLEPLN
                     QKRNPVENINQEVVSGP"
BASE COUNT          437 a          464 c          588 g          453 t
ORIGIN      
        1 ttaggttaca aagaatccag tcacttcctg cggaacatcg gtgtcaaagg ccatgcgatt
       61 cttgataaac atgtgatgag atgtttggcg gaagtcggtg taattgattc cgccaagccg
      121 ccgcaaacgc gcaggaagta cctcgaagtc gagcaggagt tgattcgttt cgcgaaagat
      181 attcgcgtcg atttcgatga actcgattta gtgttgtggt cgatgaagac aggcgagatt
      241 ctgaaatagg tgtgaatcat gcagtgtaaa agcaggcaat gtcttctgaa aacagcggcc
      301 tgcggtatgg ccgctttcgt gttttgtttg ttcctcaccg gtaccgcgca atctgtttac
      361 gcttccgccg acaagaaggc ctacaacaaa ggctatcgcg ccgcgcgcaa aggcgagtat
      421 ccgcaagccg agaagatttt tcgcgagctg ctggagaagg atgcgcacga catcgaagca
      481 cgactcggct tgagcttcac gcagctcaag caaagaaact tacaggccgc ttacgacaac
      541 gccgcacgcg tgatcatgct cgatccgctg tcggcgcgcg gtcatgcgtt gctgggcacg
      601 gcgattctcg gcgcgggtga gtttcgtttg tcggtcgagg agtttcgcac tgcgcttgcg
      661 ctcaacgaaa acgaagcgct cgccgtcgcc ggactggcga tggtcgactt ttatgagaac
      721 cgtctgaact cagccatcaa cggtttgcgc aaagcggcca gcatggatcc ggacgaaccg
      781 gactacgtgt tcagtctggg acaagcagcc gcgagaagcg agaagtaccg cgaggccgct
      841 gacgcgtacg agagatttct gatcatcgcg ccaaagaccg acaccgatcg tcgcgaacga
      901 attctcggac tgatcgcttt cctgcgttat ctcggcaagc agggatcgct ttacgttccc
      961 ggaggcgagg aacgcacgtc gattcctttt gaagcgacag acaaccgtcc catcctgcaa
     1021 gttcgtgtga atggttcgaa ggagccgctg cggtttgtgc tcgacaccgg ttcgggcatg
     1081 tcggtgattt ctgaagagac ggcgaagcgt ttgaacatca ggccggtggc gaaaggtggt
     1141 ctcgcacgcg cggtcggcgg tggtggaaag ttcgagatcg tttacggcta tctcagttcg
     1201 atcgaaatgg gagaggtcag ggtcggaagt gttccggttt acattcggaa gtttttcgac
     1261 acgaacattc cggtcgatgg ttatctggga ttgtcggtga tttcgaagtt tcttgcggct
     1321 gtcgactatg gcacgcgcaa gatgacgctg gttcgtcaga atcaaagcga tcagctggag
     1381 ccgtggacgg tgaaacgtcc cgaaggaatg ttgtcactcg tgccgctgtc gccgaacgac
     1441 gggtcggttg aagtgccgtt gcgttcgacg tcgagcggtt ttttgagtgg cgaagtcacg
     1501 ctcgatggat ttgacaagtc attaaacttt attgttgata cggctgcgag catcacagtg
     1561 atttccgaga agctttcaca ggaggaacac ctgctcgatc ttttgcagcc gtcgaagatg
     1621 cgcgtgtatg gcgcggcggg tgttactgac gacgtgaagc ttttgcagtt gcctcgtttg
     1681 agtttgggat tgagtagact cgaaaagatc aacgcggccg tactcgatat ggaaccggtt
     1741 aacgaaacag cggggtttac gcaaagtgga atcttgggtg ggaacttcct gcggcatttc
     1801 cgcatctact ttgacttcgc gcgcggcacg atgcgcctgg agccgttgaa tcaaaagcgg
     1861 aatccggtcg agaatatcaa tcaggaagta gtatcaggtc catgaagcag gctctttatt
     1921 tagagacatc ggtaatcggc gc
//
LOCUS       DASWTX010000353         1887 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_70611, whole genome shotgun sequence.
ACCESSION   DASWTX010000353 DASWTX010000000
VERSION     DASWTX010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70611"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..223)
                     /locus_tag="VGD38_05485"
     CDS             complement(<1..223)
                     /locus_tag="VGD38_05485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727503.1"
                     /translation="MVETSPSAYQPTPEAQPSSPERLASVPAPQMPEVEQAVKRVFKD
                     LAVVHPDYKSDFLAGDFNGDLSQDLAVVLK"
     gene            complement(396..1730)
                     /locus_tag="VGD38_05490"
     CDS             complement(396..1730)
                     /locus_tag="VGD38_05490"
                     /inference="COORDINATES: protein motif:HMM:NF018269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-heme oxidoredictase family protein"
                     /protein_id="HEY0727504.1"
                     /translation="MRKVLPILTLLLFVVALVLPLSAPQTVEGQTATEALTTDMDAKT
                     DDLFNGFGVKGVPIDECVNEPEPPTARGNGRFEDNKFIFSERETIEDGLGPTYNDVGC
                     VECHQSVDTGAFGQQMEFRAGHLSGGSFVDAPGGQLIHARATDSDIVEHISTAETVKA
                     FRITLSTLGDGFVECLANAALQNNVAAQPLAQRGVLTQVPVTEANNTLRIGRFGWKAQ
                     HASLVSFSGDAYLNEMGITNPFDGFGGRSSSAPDAGKHENPASTAEGVINVTFPSPFD
                     PVEDPEDDGLDVLAFADFMAATRAPRRQQPIPAAATRGDSLFTSVGCAVCHTRTFVTA
                     APGTLINGGAFAVPAALGNKIIHPFSDFALHNVGTGDGIVQNAGQGSANMLRTPPLWG
                     IRARNRLMHEGLNITIFDAIQLHAGQATAARNNFNALTAAQRNDLIAFVLSL"
BASE COUNT          404 a          513 c          561 g          409 t
ORIGIN      
        1 gtttcaacac cactgccagg tcctgcgaga gatcgccgtt aaagtctccg gccagaaaat
       61 ccgacttgta atccggatga actacagcga gatctttgaa gactcgtttt actgcttgtt
      121 cgacctcggg catttgcggc gcgggcacgg aggcgagccg ctcgggtgac gacggctgtg
      181 cttccggcgt tggttgatac gcagacggag aggtttcaac cacagcctgc tttgtgcttc
      241 ggcacccgct aatcagagcg agcgggatca gggataaaag caggatgaga agacaagatg
      301 atttcataac gttaacggtg attgaggtga agggaagctc gccgggttcg ggtccggcga
      361 gcttcgatgc cgccttgtcc tgatgtcgcg ctaatttata gcgacaacac aaatgcgatc
      421 agatcgtttc gttgcgcggc agtcaacgcg ttgaagttgt tcctcgctgc tgttgcctga
      481 ccggcgtgaa gttggatcgc gtcgaagatc gtgatgttca gtccttcgtg catcaacctg
      541 ttgcgggcgc gaatgcccca caacggcggc gtgcgcagca tatttgctga accttgcccc
      601 gcgttctgca cgataccatc gccggtgccc acgttgtgca acgcaaagtc actgaacgga
      661 tggatgattt tgtttccgag tgctgccggc accgcaaacg cgccaccatt gatgagcgtg
      721 cccggagccg cggtcacgaa agtacgcgtg tgacaaacag cacagcctac gctggtaaag
      781 agcgaatcgc ctcgcgtagc cgccgccgga atcggttgtt ggcgtcgcgg cgcacgcgtg
      841 gcggccatga agtctgcgaa agcaagaacg tcgagcccgt cgtcttcagg atcctcaacc
      901 ggatcgaaag gcgacgggaa cgtcacgttg atcacgcctt cagccgtgct ggcagggttc
      961 tcgtgctttc ccgcatccgg agcactcgaa cttctgccgc caaagccgtc gaacggatta
     1021 gtgatgccca tttcgttgag ataagcatcg cccgagaagg acacgaggct cgcgtgttgc
     1081 gctttccagc caaagcggcc gatacgcaag gtgttattag cctccgtaac cggaacttgc
     1141 gtcaacacac cgcgctgtgc gagtggttgc gcagccacgt tgttctgaag cgcagcgttg
     1201 gcgagacatt cgacgaagcc gtcgccgagc gtgctcagcg taatgcggaa cgccttgacc
     1261 gtttcagcag tcgagatgtg ttccacgata tcggagtcgg tggctcgagc atgtatcaac
     1321 tgtcctcctg gagcgtcgac gaacgagccg ccggaaagat ggccggccct gaattccatt
     1381 tgctggccga atgcgccggt gtctactgac tggtgacact caacacagcc gacgtcgttg
     1441 taggttggtc caagaccgtc ttcgatagtt tcgcgttctg agaaaatgaa tttgttgtct
     1501 tcaaaccggc cgttaccgcg ggcggttggt ggttcgggtt cgttaacaca ctcatcgatc
     1561 gggacgccct taacgccaaa gccgttgaag aggtcgtcag tcttggcgtc catgtcggtg
     1621 gtgagagctt cggttgcggt ttgaccctcg acagtttgcg gcgcactcaa aggtaagacg
     1681 agcgccacga caaacaagag cagagtcaga ataggtagga ctttcctcat gtgaatttca
     1741 cctcccagga gctgcaaacg cggttggata acagaacgag acagttcacc cgccggtaaa
     1801 ctgcacagct ctgccgtagg aaccctgctt gacgtttatg aaaagcagct caagtctttg
     1861 ggggattgac cagagtgatg agtcccc
//
LOCUS       DASWTX010000354         4427 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_177419, whole genome shotgun sequence.
ACCESSION   DASWTX010000354 DASWTX010000000
VERSION     DASWTX010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4427)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4427)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4427
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177419"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            196..813
                     /gene="ccmA"
                     /locus_tag="VGD38_05495"
     CDS             196..813
                     /gene="ccmA"
                     /locus_tag="VGD38_05495"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF010061.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis heme-transporting ATPase
                     CcmA"
                     /protein_id="HEY0727505.1"
                     /translation="MLEVSKLGCVRGDRRLFKGLDLSLSPGAFVQLTGPNGSGKTSLL
                     RILCGLLAPAEGEIKWQGANIRALGEEYVTAVTYLGHRPGVKDELTALENLRISNALN
                     GVEVSHESAVDALQRMGLAGREHLPARYLSEGQRRRVALARLLVCNTRLWLLDEVMTS
                     LDKGAVGLVRSLIEDHVNSGGIAIAATHQELGLPPGVTRRLELTT"
     gene            810..1493
                     /gene="ccmB"
                     /locus_tag="VGD38_05500"
     CDS             810..1493
                     /gene="ccmB"
                     /locus_tag="VGD38_05500"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF015344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015232 - heme transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HEY0727506.1"
                     /translation="MNAPSALSMLRWIVWRDLMLAWRRRSDMLSTVFFFVLVVSLFPL
                     GIGPETQLLRSIAPGVVWVAALLASMLSLGRLFANDYQDGTLEQLLLTPQPLFLVVLG
                     KVLAHWIVAEIPLVLVAPLVGVQFDLSQQTLLVLFVSLLVGTPILSLIGSVGAALTLG
                     LRGGGVLISILILPLYIPALIFGAGAVQASIIGMDPAPHLYLLGAFAIVSSLFVPWAA
                     SAALRISVE"
     gene            1515..2435
                     /gene="ccmD"
                     /locus_tag="VGD38_05505"
     CDS             1515..2435
                     /gene="ccmD"
                     /locus_tag="VGD38_05505"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HEY0727507.1"
                     /translation="MNLYKYASPATFYPLAGKMIPWFAIPAAILFAVGMYVGFFVAPT
                     DFQQGDAYRIIFIHVPAAWMGMFLYVLMAIYAGIGWAFNARLSSMMASAIAVTGAMFT
                     LLSLVTGAFWGKPTWGTWWVWDARMTSTLILLFLYAGFISLQAAIDDPRRADRAGAVL
                     ALVGVINVPIIYFSVQWWNTLHQGATIRILGKPTIAAPMLTAMLIMLAACWLYSVAVV
                     LSRLRCIILEREQNAARCAEVNASMNWPDLSRGGYGFYVWGSYLFSLIVIVWELVSLR
                     QRKKALLRQEERSPSMRPSVLRGSANETTS"
     gene            2419..2877
                     /gene="ccmE"
                     /locus_tag="VGD38_05510"
     CDS             2419..2877
                     /gene="ccmE"
                     /locus_tag="VGD38_05510"
                     /inference="COORDINATES: protein motif:HMM:NF009729.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017003 - protein-heme linkage [Evidence
                     IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HEY0727508.1"
                     /translation="MKRRHKRIGIILVGLAGLSLAAFLVASAFRQNLVFFFSPTQVAA
                     KEAPIDRTFRIGGLVQDGTLKRESDGLTVRFTVTDTAASIPVVYKGILPDLFKEGRGC
                     VAQGKIGADGVFQADQVLAKHDENYMPPEAGEAIDKAKHAKEAAKSVVAN"
     gene            2882..>4427
                     /locus_tag="VGD38_05515"
     CDS             2882..>4427
                     /locus_tag="VGD38_05515"
                     /inference="COORDINATES: protein motif:HMM:NF007691.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HEY0727509.1"
                     /translation="MIPEIGQFALVIALLLALTQATLPLIGASRGNRTWIAIAAPAGQ
                     AQFLFVTIAFCCLAYSFITNDFSVLNVATNSNSQLPLHYRLAATWGSHEGSLLLWTLM
                     LALWTAAVSLFSKHLPDEMVARVLSVMGIVSIGFLLFMLLTSNPFTRIFPVPVDGRDL
                     NPLLQDPAMVAHPPMLYMGYVGFSVAFAFAIAALIGGRLDATWARWSRPWTTVAWMFL
                     TCGIALGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEKRGGFKSWTV
                     LLAISAFSLSLLGTFLVRSGVLTSVHAFATDPKRGIFILAFLVAVIGGSLLLYAWRAK
                     QVGLGSKFDVISRESLLLSNNVLLTVAAGSVLLGTLYPLLVDALGMGKLSVGPPYFNL
                     VFVPLMAPAMFLMGLGPLARWKKAELPDLAKRLRWAFVVSVLSAVTLPFVLGGWKWLV
                     SLGLLLAIWIVATVLVNVWERVRVTSGQLTMFQKLRAQSRSYYGMQVAHVGVAVFIVG
                     VTIVTGY"
BASE COUNT          762 a         1174 c         1381 g         1110 t
ORIGIN      
        1 ggggcgcagc cccgcctcac atcaagcggc gaagctgcgg cgaaggcacc tcacatccgg
       61 cggcgaagcc gcggcgaagg aggtccggtg aatcgaagct gtcctgtgag taagagcaga
      121 acttatacaa aactgcgcgg agccgtggtc agaatgaggt ttctccaata aaatggccgc
      181 ggaggaaaat cgaatatatt agaggtcagc aaactcggct gcgtccgcgg agatcgccgg
      241 ctgtttaagg gtctcgatct ttcgctttca cccggcgcct tcgtccaact caccggcccg
      301 aacggaagcg gcaagactag tttgctgcgc atcctgtgcg gtctcctggc gccggcggaa
      361 ggcgaaatca agtggcaagg tgcgaatatt cgcgcgctgg gtgaggaata tgtcacggcg
      421 gtgacttacc tcggccaccg ccccggtgta aaagacgaac tgaccgcact tgaaaatctg
      481 cgcatctcaa atgcactaaa cggcgtcgaa gtaagccacg aaagcgccgt cgacgcactg
      541 caacgaatgg gcttagccgg ccgcgaacat cttccggcac ggtacttgtc agaaggtcaa
      601 cgccggagag ttgcgctcgc acgattgctg gtttgcaaca cgcgtctctg gctgctcgac
      661 gaagtaatga cttcgctgga taaaggcgcc gtcgggctgg ttagatcttt gattgaagac
      721 cacgtgaaca gcggcggcat cgccatcgcc gcgacgcatc aggaactcgg attgccgccc
      781 ggtgtgacca gacgactcga actcacaacg tgaacgcacc ttcggccctt tcgatgttgc
      841 gctggatcgt ttggcgcgat ctgatgctgg cctggcgccg gcgttccgac atgctgtcga
      901 cggttttctt cttcgtgctc gtcgtcagtt tgtttccgtt gggaattgga ccagagacgc
      961 agttgttgcg ttcgatcgcg ccgggtgttg tttgggtcgc ggcgttgctg gcatcgatgc
     1021 tttcgctcgg acggttgttt gcaaacgact accaggacgg aacgctcgag cagttattgt
     1081 taacgccgca accgcttttt ctggtcgtac tcggcaaagt gctggcgcac tggatcgtcg
     1141 cggagattcc gctggtgctg gtcgcgccgc tggttggagt gcagtttgat ttaagtcagc
     1201 agacgttgct tgtgttgttt gtgagtttgc tcgtgggcac accgatattg agtttgatcg
     1261 gatcggttgg agcagcattg acgttgggat tacgtggggg cggcgttttg atctcgatcc
     1321 tgatattgcc gctgtacatt ccggcgttga tctttggagc gggagcggtt caggcgtcga
     1381 tcatcggcat ggatcccgcg ccgcatttat atttgcttgg agcctttgca attgtgtcgt
     1441 cgttgttcgt tccttgggcg gcgtccgcgg cgttgcgcat ttcggtggaa taattaagaa
     1501 aacggatttg aaatatgaat ctttacaagt acgcttcacc cgcaactttc tacccgttag
     1561 caggcaagat gatcccgtgg tttgcgattc ccgcggcgat attgttcgcg gttgggatgt
     1621 atgtcggctt ctttgtggcg ccgactgact tccaacaggg cgacgcgtac cgcatcatct
     1681 ttattcacgt tcctgctgca tggatgggaa tgtttctcta cgtgctgatg gcgatctacg
     1741 ccggcatcgg ttgggcgttc aacgcgcggc tctcgtcgat gatggcgtcg gcgatcgccg
     1801 taacgggcgc gatgtttacg ttgctgtcgc tcgtgaccgg cgcgttttgg ggtaaaccaa
     1861 cgtggggcac atggtgggtt tgggacgcgc gcatgacctc gacactcatc ctgctgtttc
     1921 tctacgccgg attcatttcg ctgcaggctg cgattgacga tccgcgccgc gcggatcgcg
     1981 caggcgctgt gctcgcgctc gtcggcgtga tcaatgtccc gatcatttat ttttcagtgc
     2041 agtggtggaa tacactgcac cagggcgcga ccattcgcat tctcggcaaa ccgaccatcg
     2101 ccgcgccgat gctcacggcc atgctgatca tgctggctgc gtgctggctc tactcggttg
     2161 cagtcgtgct ctcacgcctg cgttgcatta ttttagagcg agagcagaac gctgcccgct
     2221 gtgcggaggt gaatgcttca atgaactggc cagatctatc gaggggcggg tatggtttct
     2281 acgtttgggg atcttacctc ttctctttaa tcgtcattgt ttgggagctc gtgagcctgc
     2341 gccagcgcaa aaaagcattg ctcaggcagg aagaaagatc tccctccatg cgtcctagtg
     2401 ttctaagagg aagtgcgaat gaaacgacgt cataaaagaa tcggaatcat cctcgtcgga
     2461 cttgccggac tcagcttagc ggcctttctc gttgcgagcg cgtttcggca aaacctggtc
     2521 ttctttttta gtcccactca agtggctgcc aaagaagcgc cgatcgatcg cacgtttcgt
     2581 atcggcggtc tcgttcagga cggcacactg aagcgcgaat cggacggttt gaccgtgcgc
     2641 ttcaccgtga ccgacaccgc tgcgagtatt ccggtggtct acaaaggcat cctgccggat
     2701 ctatttaaag agggccgcgg ctgcgtggcg cagggaaaga tcggcgctga cggcgtcttc
     2761 caggcggatc aggtgctcgc gaaacacgac gagaactaca tgccgcccga agccggcgag
     2821 gccatcgata aagccaagca cgcgaaagag gctgccaaat ccgtcgtcgc caactaaata
     2881 aatgattcca gagattggtc agttcgcact cgttatcgcg ctgctgctcg cgttaaccca
     2941 ggcgacgttg ccgctgatcg gcgcttcgcg tggtaatcgc acgtggatcg cgatcgccgc
     3001 acccgcaggc caggcgcagt ttctcttcgt gacaatcgcg ttctgctgcc tcgcgtattc
     3061 tttcatcacc aacgattttt ccgttctcaa cgtcgcgaca aattccaatt cgcaactgcc
     3121 gttgcactat cgtctagcgg cgacgtgggg ctcgcacgag gggtcgctgt tgttgtggac
     3181 gttgatgctc gcgctctgga ctgctgcggt ttcgcttttc agcaagcact tgcctgacga
     3241 gatggttgcg cgtgtgttga gcgtgatggg catcgtgagc atcggcttcc tgctgttcat
     3301 gttgctgacg tcgaatccgt ttacgcgcat ctttccggtt ccggttgacg gacgcgactt
     3361 gaatccgttg cttcaggacc cggcgatggt cgcgcatccg ccgatgcttt acatgggtta
     3421 cgtcggcttt tcggtggcgt ttgcgtttgc gatcgcggca ctcatcggcg ggcggttgga
     3481 cgcgacgtgg gcgcgctggt cgcggccgtg gaccacggtt gcgtggatgt ttctcacgtg
     3541 cggcatcgca ctcggaagct ggtgggctta ctacgagctc ggctggggcg gctggtggtt
     3601 ttgggacccg gttgagaatg cgtcgttcat gccgtggctc gtcggcactg cgctgattca
     3661 ctcgttggcg gtgacggaaa aacgcggtgg cttcaaaagt tggacggtgc tgctggcgat
     3721 ttcggcgttt tcgttgagtt tgctcggaac gttcctggtg cgctcgggtg tgctcacttc
     3781 cgtgcacgcg tttgccacgg atccgaagcg cggcattttc attctcgcgt ttctggttgc
     3841 cgttatcggc ggctcgttgc tgctttatgc gtggcgcgcg aagcaggtcg gactcggaag
     3901 caagtttgac gttatctcgc gcgagtcgtt gttgctttcg aacaacgtgc tgctgactgt
     3961 cgctgccggt tcggtgttgc tcggcacgtt gtatccgctg ctcgtcgacg ctttgggaat
     4021 gggcaagctc tctgtcggcc cgccttattt caatctcgtg tttgtgccgc tgatggcgcc
     4081 cgcgatgttc ttgatgggcc ttggaccatt ggcgcgttgg aagaaagcgg aattgccgga
     4141 cctcgcgaaa cgtttgcgct gggcgtttgt cgtcagtgtg ctcagtgcgg tgacgctgcc
     4201 gtttgttctc ggcggttgga aatggctcgt gagtttggga ctgttgctcg ccatctggat
     4261 cgttgcgact gtgctcgtga atgtttggga gcgtgtgcgc gtgacgtcgg gtcagttgac
     4321 gatgtttcag aagttgcgcg cgcagagtcg tagttattac ggcatgcagg tcgcgcatgt
     4381 tggcgtcgcg gtgttcatcg tcggcgtgac gatcgtcacg ggttacc
//
LOCUS       DASWTX010000355         2442 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_352825, whole genome shotgun sequence.
ACCESSION   DASWTX010000355 DASWTX010000000
VERSION     DASWTX010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2442)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2442)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2442
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_352825"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..199)
                     /locus_tag="VGD38_05520"
     CDS             complement(<1..199)
                     /locus_tag="VGD38_05520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727510.1"
                     /translation="MKRRNFISLGLAAMTVPAIGKLVEEVEAATRSVAHLTPEQAAMD
                     EDYWSIIQNSFTVTRGIVNLNN"
     gene            complement(204..1886)
                     /locus_tag="VGD38_05525"
     CDS             complement(204..1886)
                     /locus_tag="VGD38_05525"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEY0727511.1"
                     /translation="MKLLLILSLLLLTFVPFQSSVAPADIVFKNGNVYTANDKAPQAE
                     AIAVKADRIVFVGSNAAAQKYVGANTRVVDLKGNTVLPGFTDSHQHLSGVGLREMTLN
                     LEGTTSLDDFLAKVKARVDQAKPGDWITGRGWIETHWQPPVFPTRWDLDKVAPNNPVF
                     LGRADGHGGVANSAALKLAGIDKNTPNPFGGEISKDKQSGEPNGMLLDSAQGLVRSKV
                     PPTSREDAERAVVLGVKRNIELGWTQIQDAGGSYNDVEIFKKLYAEGAIKLRIYKAVH
                     GPGASATRLLNEGATIGAFGNRFTFRTIKVVSDGALGSRGAALHAAYSDAPDTSGFLT
                     VKAEELRPMLIDALRKGIQVETHAIGDRANTFILDEYEAALKAVPPAQRKVADPRWRV
                     EHAQIVNPKDIPRFAKLGIIPSMQPSHAIGDLFFAPSRVGIARLAGSYEWESFIKSGV
                     VVPGGSDAPVERGEPMIEFYAAVARKDQKGFSGEGWHPEEAVTRAQALKMFTLWPAYA
                     AFEDKLRGSIEVGKLADLTILSADIMKIPEAEILKTRCVMTVINGEVAYEGS"
     gene            complement(1897..>2442)
                     /locus_tag="VGD38_05530"
     CDS             complement(1897..>2442)
                     /locus_tag="VGD38_05530"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase family protein"
                     /protein_id="HEY0727512.1"
                     /translation="DAPAEFGSLGRVLHLDAHDPPACVRVAQAAKASGTIVSADIDNV
                     YEGLPELLPLIDILIGSKEFPRRVTGIADERAALIELHRRFGCAIAGMTIGAAGAVVY
                     CDGEFIESPGFRAPGGCRDTTGAGDAFHAGFLYGFLTHQDLETSLKFGNAVAAMKCSA
                     LGARTALPTEAELTNFLNNPC"
BASE COUNT          470 a          787 c          688 g          497 t
ORIGIN      
        1 cgttgttgag gttgacgatg ccgcgcgtga cagtgaagga gttttgaatg atggaccagt
       61 agtcttcatc catcgcggcc tgttcgggcg tgaggtgcgc gacgctccgc gtggccgctt
      121 cgacttcttc tacaagctta ccaatggccg gcaccgtcat cgccgccagc cccaacgaaa
      181 taaaatttcg tcttttcatc ggtttaagat ccctcgtaag cgacctcgcc attgataacc
      241 gtcatcacac agcgcgtctt caatatctcc gcttcgggaa tcttcatgat gtccgccgac
      301 aagatcgtca ggtccgccag cttcccgact tcaatcgaac cgcgcagttt gtcttcgaac
      361 gccgcatacg ccggccacaa cgtaaacatc ttcaacgcct gcgcgcgcgt caccgcttct
      421 tccggatgcc agccctcacc cgagaaaccc ttctggtcct tgcgcgccac cgcggcatag
      481 aactcgatca tcggctcgcc gcgttccacc ggcgcgtccg atccacccgg cacgaccacg
      541 cccgacttga taaaactctc ccactcatac gaaccagcca acctcgcaat cccgacgcgg
      601 ctcggcgcga agaacagatc gccgatcgcg tgcgacggct gcatcgacgg aatgattccc
      661 aacttcgcaa aacgcggaat gtctttcgga ttcacgatct gtgcgtgctc gacgcgccag
      721 cgcggatcgg cgacttttct ttgcgccggc ggcacggcct tcaacgccgc ttcgtactca
      781 tcgagaatga acgtattcgc gcgatcgccg atcgcgtgcg tctcaacctg aatccctttg
      841 cgcaacgcat cgatcagcat cggccgcaac tcttccgctt tcactgtcaa aaacccggaa
      901 gtgtccggcg cgtctgaata cgccgcgtgc aacgccgcgc cacgcgaacc gagagcgccg
      961 tcagacacga ccttgatcgt gcggaaagtg aaacgattac caaacgcgcc gatcgtcgcg
     1021 ccttcgttga gcaagcgcgt cgcactcgcg cctggaccat gcaccgcttt gtagatgcgc
     1081 agcttgatcg cgccttcagc gtaaagcttc ttgaagatct cgacgtcgtt gtaactgccg
     1141 cccgcgtcct gaatctgcgt ccagcccagc tcgatgtttc gtttgacgcc gagcacgacc
     1201 gcgcgctctg cgtcctcgcg cgaagtcggc ggcactttgc tgcgcaccaa tccctgcgcg
     1261 gagtcgagca acatgccgtt tggttcgccg gactgtttgt ctttcgagat ctcgccgcca
     1321 aacgggttcg gtgtgttctt atcaatgccg gcgagtttca gcgcggcact gtttgcgact
     1381 ccgccgtgtc catcggcgcg tccgagaaaa accggattgt tcggcgcgac tttgtcgagg
     1441 tcccagcgcg tcgggaaaac cggcggctgc cagtgcgttt cgatccagcc gcggccggtg
     1501 atccagtcgc cgggtttcgc ctggtccaca cgtgctttca ccttcgcgag aaaatcgtcg
     1561 agactcgtcg tgccttcgag attcagcgtc atctcacgca ggccgacgcc ggagagatgc
     1621 tggtgcgaat cagtgaagcc cggcagcacg gtgttgccct tgagatcgac cacgcgcgtg
     1681 tttgcgccga cgtacttttg cgcggcggca ttcgagccaa cgaagacgat gcgatcggct
     1741 ttaacggcga tcgcttcggc ttgcggcgct ttgtcgttcg cggtgtagac gtttccgttt
     1801 ttgaagacga tgtcggcagg cgcaacgctt gactgaaacg gcacgaaggt caggagcaac
     1861 aagctcagta ttaagaggag tttcataggc cacagattaa cacggattat tcagaaaatt
     1921 cgtgagttcg gcttcggtcg gcagcgccgt cctcgcaccc agcgcgctgc acttcatcgc
     1981 tgccacggcg tttccaaact tcaagcttgt ttcgagatcc tggtgcgtaa ggaagccgta
     2041 gagaaacccg gcgtgaaacg cgtcgccggc gccggtagtg tcgcggcagc cgccgggcgc
     2101 gcggaagccg ggtgattcga taaactcgcc gtcgcaatag accaccgcgc ccgcggcgcc
     2161 gatcgtcatg ccggcaatgg cacaaccgaa tctccggtgc agttcgatca acgcggcgcg
     2221 ttcgtcagcg atccccgtga cgcgacgcgg aaactctttc gaaccgatca ggatgtcgat
     2281 caacggcagc aactcgggca ggccttcgta aacgttatcg atgtccgcgg agacgatcgt
     2341 gcccgatgct ttcgcggctt gcgcgacgcg gacgcacgcc ggcggatcgt gcgcgtcgag
     2401 atgaagcaca cgcccaagcg agccaaactc agccggcgcg tc
//
LOCUS       DASWTX010000356         1782 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_198772, whole genome shotgun sequence.
ACCESSION   DASWTX010000356 DASWTX010000000
VERSION     DASWTX010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1782)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1782
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198772"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..905)
                     /locus_tag="VGD38_05535"
     CDS             complement(<1..905)
                     /locus_tag="VGD38_05535"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HEY0727513.1"
                     /translation="MTKRYNLIRVLPVLAVLLLISSAALAQPAVGTVKRLSLKSTVLG
                     EERVILVRTPVGYETNEEKYPVLYMTDGDAHMGHTASTIEFLTRNGRISDLIVVGVTN
                     TDRTRDLTPAKSTDKNPAGELRFPTAGGADNFLKFFETELIPEIEKQYRVQPYRIFSG
                     HSFGGLFAIHAMITKPGLFNSYVAVSPSLQWENFEALKRAETFLKNQKELKTTLYVSL
                     GNEPGPIGQSFDKFKEALSKTNIKGFEWQAERMDDEDHGSVVLRSHYAGLRKVYTGWQ
                     GPRDLQTGAVVGGLKGADEHYKKLS"
     gene            1021..>1782
                     /locus_tag="VGD38_05540"
     CDS             1021..>1782
                     /locus_tag="VGD38_05540"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY0727514.1"
                     /translation="MGRLHMIDRRLFIGTAAAALVATQIPSIKAAQTGTFDALKRIDA
                     GLLNVAYVDAGPAGGPPVLLLHGWPYDIYSYVDVVPLLTAKGYRVIVPYLRGYGATTF
                     LSDKTMRNAQQSALARDVIALLDALKIDQPVIGGFDWGARTANIVAALWPERCKAMVS
                     VSGYLIGSQAANRAPLPPKAELDWWYQFYFATERGRAGYEKYRRDFAKLIWQLASPKW
                     NFDDATFARSAASFDNPDHVDIVIHNYRWRLSLAEG"
BASE COUNT          394 a          518 c          477 g          393 t
ORIGIN      
        1 tcgctgagtt tcttgtaatg ctcgtcagcg cccttcaacc caccgacgac tgcgccggtt
       61 tgcagatcgc gcggaccttg ccatccggta taaacctttc gcaatccagc gtagtgactg
      121 cgcagcacga ctgaaccatg gtcttcatca tccatgcgtt cagcttgcca ctcgaaaccc
      181 ttgatgttcg tcttcgacag cgcttctttg aacttgtcga agctctggcc aatcggaccc
      241 ggttcattgc cgagtgacac atacagagtg gtcttcaatt ccttctgatt cttcaaaaac
      301 gtctcagcac gtttcaacgc ttcgaagttt tcccattgca gcgaaggact aaccgcgacg
      361 taggagttga agagtccggg tttggtgatc atcgcgtgga tcgcgaagag tccaccgaac
      421 gaatgtccgc tgaaaatgcg atacggctga acccggtatt gcttctcgat ctcgggaatc
      481 aattcagttt caaaaaactt caaaaagtta tcggcgccgc ccgcggtcgg aaagcgcagt
      541 tcgcctgccg gatttttgtc ggtggacttc gccggcgtca ggtctcgcgt gcgatcagtg
      601 ttcgtcacgc cgacgacaat caaatccgag atacggccgt tgcgagtaag aaactcgatc
      661 gtactcgccg tgtggcccat gtgcgcgtcg ccgtcggtca tgtaaaggac aggatatttt
      721 tcctcgttcg tttcataccc aaccggcgta cgcacaagga tcactcgctc ttcgcccagg
      781 actgttgact tgagcgaaag tcgtttcacg gtgccgacgg cgggttgcgc gagtgccgca
      841 gaggagatca gtaagagaac tgcaagaacg ggcaaaacac gaatcaggtt atagcgtttt
      901 gtcatagctc aactccaagg tagatgggtt tactgatacg gcaacgcagc tcggggaggc
      961 gaagatatta ctatcgaaac acacgttcgt ccaataaact atgcctccaa tcattgacgc
     1021 atggggaggc tacacatgat cgatcgccgg ctctttatcg gcaccgcagc cgcggctctc
     1081 gtcgcaacac aaataccgag tatcaaagca gcgcaaacag gtacattcga cgcactcaag
     1141 cgcatcgacg cgggactttt gaatgtcgcg tacgtcgacg ctggtccggc cggcggaccg
     1201 cccgtgcttc ttttgcacgg ttggccgtat gacatctaca gctatgtgga cgtcgtgccg
     1261 ttgttaacag cgaaaggtta tcgcgtcatc gttccttacc tgcgcggcta cggcgcgacg
     1321 acgttcctgt ccgataagac catgcgcaac gcgcaacagt cggcgctcgc tcgcgacgtc
     1381 atcgcgttgc tcgacgcgct gaagatcgac caacccgtca tcggcggatt cgattggggc
     1441 gcgcgaaccg caaacatcgt ggcggcgctc tggcccgaac gctgtaaagc gatggtctca
     1501 gtaagcggct acctgatcgg cagccaggct gctaaccgcg cgccgttgcc gccaaaggcc
     1561 gagctcgact ggtggtacca gttttacttc gcgactgaac gcggccgcgc tggttacgaa
     1621 aaataccgtc gcgacttcgc gaaactcatc tggcaactgg cttcgccaaa atggaacttc
     1681 gacgacgcga cattcgctcg cagcgcagcc tcattcgaca acccggacca cgtcgacatc
     1741 gtgattcaca actatcgctg gcgtctcagt ctcgcagaag gt
//
LOCUS       DASWTX010000357         4690 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_3908, whole genome shotgun sequence.
ACCESSION   DASWTX010000357 DASWTX010000000
VERSION     DASWTX010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4690
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3908"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(125..1645)
                     /locus_tag="VGD38_05545"
     CDS             complement(125..1645)
                     /locus_tag="VGD38_05545"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEY0727515.1"
                     /translation="MWVYVIAVAYFALHLITSTRYGYFRDALYYLACSEHLAFGYVDQ
                     PPLIAWVGWVVRHTLGTSLPALLLLPALAGAGRIVLIAALARELGAGRFGTIFAAALA
                     ATPGVWWVIDHQFAMNCFEPLLWGGLAFVVVRLIKTENPKLWLAFGAIAGVGLLNKYS
                     LVVFAAALLAGLLLTRQRRVLFTPWILAGGAIAFLIFLPNLVWNVQNNWPFLELMQNV
                     RATGKDVVLPPGKYLLQQVLMMNPVSFPFWFGGLLFLLFSREVRIFRALGWTFAITIA
                     FFMITHGKDYYAAPAYVIVLAAGAVATERVLARISFSRGKLRTALRAACFVWLVLGVA
                     PLLPLVLPVLPIQTFLRYQSHLPFEVPKTEQSFVGETLPQYYADEFPWPGMVEAVARV
                     YYSLTPEEQRRTAIFANNYGQAAAVDFFGPQYGLPQAISGHQNYFFWGPRNYTGEIVI
                     VLGDEEDDAREHFESVTVAATLNNPYAYRYENYPILLCRGLRWDLQTEWSRVKNWR"
     gene            1849..2097
                     /locus_tag="VGD38_05550"
     CDS             1849..2097
                     /locus_tag="VGD38_05550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727516.1"
                     /translation="MEKSWKGATFVEEFSVLSAHGANECFAFPKVKKGERYLVYADPF
                     SKDDTGRTEWIIISSCSRTALTTKAEADIKSLNRFMLQ"
     gene            complement(2084..2776)
                     /locus_tag="VGD38_05555"
     CDS             complement(2084..2776)
                     /locus_tag="VGD38_05555"
                     /inference="COORDINATES: protein motif:HMM:NF014626.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA];
                     GO_process: GO:0018142 - protein-DNA covalent
                     cross-linking [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SOS response-associated peptidase"
                     /protein_id="HEY0727517.1"
                     /translation="MCGRFTVRTAPKVKLPGVRNDLLPFAPRYNIAPTQDVLVVADLG
                     DGVELTTLSWGLIPARSDDGRRFINARGETIETKPSFSDSFKKRRCLILADGFYEWKR
                     SGKAKQAYYIQMSDKSPFAFAGIWDSWYTKERITACAIVTTAANETLKPIHDRMPVIL
                     TSESYESWLSPDTDPRFLREMLAPFPASAMSSHQVGRAVNSVQNDGPELIAPKVYEIG
                     ETFSLFDALTEA"
     gene            complement(2780..>4690)
                     /locus_tag="VGD38_05560"
     CDS             complement(2780..>4690)
                     /locus_tag="VGD38_05560"
                     /inference="COORDINATES: protein motif:HMM:NF014896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY0727518.1"
                     /translation="WIDAQNKYTHSLLDGLPSRLMIQKRLSELLRVDSMSSPFEQDGR
                     YFLFKKRAEDDLSILYVRQGLNGKDEVLIDPHTLSPDHTTDISLLDASSGGKLIVYSV
                     RRGGTDETELHVMDVDKRKDVDQLPHALYRGVSMKADGSGFYYNLQRRDTGIRVFYHA
                     LGTEQSKDVEVFGKGYGPDKWIGGSVSEDGKYLLFGVSHGWARNEIYVQKLSGGPVQT
                     IVNDIPAHFNAWFAGDRLVMQTDWQAPNQRIVVVDLNDPAREKWRTIVPERRDAIAGF
                     SLVGGKLFVSYLHNVTTQIKIFNLDGKVLGEVSLPGLGAASGLSGRWNSNEAFFSFRS
                     FVTPQTIYRYDVQTGKSEVWARLNVPFKSDDFEVRQVWYPSKDGTKVPMFLVHKKGLQ
                     PDGNRPVLLYGYGGFNVSQTPRFSASAAIWVEQGGVYALANIRGGGEFGEAWHKAGML
                     DKKQNVFDDFIGAAEWLVKNKYTNPSRLAIQGGSNGGLLVGAALTQRPDLFQAVLCQF
                     PDLDMIGYYRFKNNNPPALLEYGNASDPAQFKYLHAYSPYQKVKPGEKYPAVLLTTGD
                     QDTRVPPLQARKMTARLQAASTSDKPVLLLYDTKAGHAGGRPLSKIIEDVSLELAFLF
                     WQLKMDHKAASE"
BASE COUNT         1095 a         1333 c         1283 g          979 t
ORIGIN      
        1 gtgttcgcgc cgataccgag cgcgagcatg agtgttgcga taacgacgaa gccgcggctt
       61 ctcgagagcg ttcgtgacgc atagcgaagg tcttgccaaa ggtccatttt gattgatgga
      121 gaggtcatct ccagttcttc actcgcgacc actccgtttg caggtcccat cttaaaccgc
      181 gacacaagag tatgggataa ttttcgtagc gataggcata agggttgttg agtgtggctg
      241 cgactgtcac tgattcgaag tgttcccgcg catcgtcttc ctcgtcgccc agcacgatga
      301 cgatctcgcc cgtgtaattt cgcggtcccc agaagaagta gttttgatgt ccactgatcg
      361 cctggggcaa gccgtactgt ggtccaaaga aatcgactgc cgctgcctga ccataattat
      421 tggcaaagat tgccgtgcgc ctctgttctt cgggagtgag cgaataatag acgcgcgcaa
      481 cggcctcaac catgcccggc cacggaaact catcagcgta gtactgcggc agagtttcac
      541 cgacaaagct ttgctccgtc ttcggaacct caaaaggcaa atgcgactga tagcgaagaa
      601 acgtctggat cggcaataca ggcaacacca gcggcagcaa tggcgctaca cctaaaacca
      661 accacacaaa acatgcggcc cttagagcag ttcgtagttt tccgcgcgag aaggaaatgc
      721 gagccagcac ccgttcagtc gcgaccgcgc cagcagcaag cacgatgacg tatgccggcg
      781 cagcgtaata atcttttcca tgcgtgatca tgaagaacgc gattgtgatc gcgaacgtcc
      841 agccaagcgc gcgaaagatc ctgacttcgc gcgagaagag taagaagaga agcccgccaa
      901 accagaacgg aaaactcacc ggattcatca tcagcacctg ctgcaacaga tacttgcccg
      961 gtggaagcac gacgtccttt cccgtcgcgc gcacgttctg catcagttcc agaaacggcc
     1021 agttgttctg aacattccaa accaagttcg gcagaaagat caaaaacgcg atcgcgcctc
     1081 cggcgagaat ccatggtgta aacaacaccc gtcgttggcg tgttaacagc aacccggcga
     1141 gcaacgctgc ggcaaaaaca acgagcgagt atttgttgag cagaccaacg cccgcaatcg
     1201 cgccgaatgc taaccacaac ttcggattct ctgtcttgat gagacgcacg acgacaaaag
     1261 cgagaccgcc ccacagcaga ggttcgaaac agttcatcgc gaactgatga tcgataaccc
     1321 accaaacacc gggcgtcgct gcgagcgcgg cggcgaagat cgtaccgaag cgaccagcgc
     1381 cgagctcacg tgccaacgcg gcgatcaaga cgatgcgtcc tgcgccggca agtgccggca
     1441 acaagagtaa agcgggaagc gacgtgccta aagtgtgtct cacaacccag ccgacccacg
     1501 cgatcaacgg cggctgatcg acgtagccaa atgccaagtg ttcagaacag gcgagatagt
     1561 agagcgcatc gcgaaagtag ccgtagcgcg tggaggttat gagatgtagt gcaaagtagg
     1621 cgacagcaat gacgtaaacc cacattaaaa gccctccaat tgacagacga atgtttgcac
     1681 cgcttcccga ctctcagatc actctagttg cgctcattct gaatgttctc ggccattctc
     1741 aatcgttgcg caagacaaaa gtcgactcgc aaagcagcaa gtcgcaagtg aaatttcgcg
     1801 aaaggcctga cggcggcgga gcgcaagttc tatacgatca agttcgaagt ggaaaagagc
     1861 tggaagggcg caacattcgt ggaggagttc tcggtgttgt ctgctcacgg cgcgaacgag
     1921 tgttttgctt ttccaaaagt gaagaaggga gaacggtatc tggtttatgc ggatccgttc
     1981 tcgaaggacg acacgggtcg aaccgaatgg atcatcatta gtagttgcag tcgaaccgcg
     2041 ctcaccacga aagcggaagc agacatcaag agtctgaatc gctttatgct tcagtgagcg
     2101 cgtcaaacaa actgaaggtt tccccgatct cgtaaacctt cggagcgatc aattcagggc
     2161 cgtcattctg aacagagttg acggccctgc ccacttgatg cgacgacata gctgaggccg
     2221 gaaacggcgc gagcatctct cgcaaaaatc gtggatcagt gtccgggctc agccacgatt
     2281 catacgactc ggaggtcagg ataacgggca tccgatcgtg aatcggtttg agtgtttcgt
     2341 tggccgcggt ggtgacgatc gcgcaggctg ttattcgttc tttcgtgtac caactgtccc
     2401 aaataccggc gaacgcaaac ggcgacttgt cgctcatctg aatgtagtaa gcctgcttcg
     2461 ccttgccgga acgtttccac tcataaaaac catccgcgag aatcaggcaa cggcgtttct
     2521 tgaaagagtc gctgaagctc ggcttggtct cgatcgtttc tccgcgcgcg ttgatgaatc
     2581 tccggccgtc atcacttcgc gccggaatca aaccccagct cagcgtcgtc agttcaactc
     2641 cgtcacccaa atccgcgacg acaagaacgt cctgcgtcgg cgcgatgtta tagcgcggcg
     2701 cgaacggcag cagatcgtta cgcacgccgg gcagcttaac tttcggagca gttcgaactg
     2761 taaagcgtcc acacatgatt tactcggaag cagctttgtg gtccatcttg agttgccaga
     2821 agaggaatgc gagctccagt gagacgtcct cgatgatctt gctcaaggga cgtccgccgg
     2881 cgtgacccgc tttggtgtcg tagagcagca ggacaggttt gtctgacgtg ctcgcggctt
     2941 gcaggcgcgc ggtcatcttg cgtgcttgaa gcggcgggac tcgcgtgtcc tgatcgcccg
     3001 tcgttaagag cactgccgga tacttttcac ccggcttcac cttctgataa ggcgaatacg
     3061 cgtggagata tttgaactgc gccggatcgg aagcattgcc gtactcgagc agcgcgggtg
     3121 gattgttatt cttgaaccgg tagtagccga tcatgtcgag gtcgggaaac tggcagagca
     3181 cggcttggaa cagatcgggc cgctgcgtga gcgctgcgcc gacaagcaaa ccgccattgc
     3241 tgccgccttg aatagccaac cgcgacgggt tcgtatactt gtttttgacg agccactcgg
     3301 cagcgccgat gaaatcgtcg aagacgttct gcttcttgtc gagcatgccg gctttgtgcc
     3361 atgcctcgcc aaactcaccg ccgccccgaa tgttcgcgag tgcatacacg ccgccctgtt
     3421 cgacccaaat cgcggcggat gcactgaacc tcggcgtctg gctgacgttg aagccgccat
     3481 agccatacaa cagcaccggg cggttcccat ctggttgcag tcctttctta tggaccagga
     3541 acatcggcac ctttgttccg tctttcgatg gataccacac ttgccggacc tcaaaatcgt
     3601 ctgacttgaa cggaacattc agccgcgccc aaacctccga ctttccggtt tgcacgtcgt
     3661 agcgatagat ggtctgcggc gtcacaaacg agcggaagct gaagaatgct tcgttgctgt
     3721 tccatcgtcc cgagagacca cttgccgcac caagacccgg aagcgagact tcgcccaaca
     3781 cttttccatc aaggttgaag atcttgatct gtgtcgtgac gttgtgcagg taactcacaa
     3841 acaacttgcc gccgacgagc gagaaccccg cgatcgcgtc gcggcgttcg ggaacgatcg
     3901 tccgccactt ctcacgcgca ggatcattca gatcgacaac gacgatgcgc tgattcggcg
     3961 cctgccagtc ggtctgcatc acgagccgat cgccggcaaa ccacgcgttg aagtgcgccg
     4021 gtatgtcgtt gacgatcgtc tgcactggac caccggagag cttttgcacg tagatctcgt
     4081 tcctggccca accatgcgaa actccgaaca gcaaatactt gccgtcctct gaaacagatc
     4141 cgccgatcca cttgtcgggt ccgtaacctt tgccgaatac ctcaacgtct ttcgactgct
     4201 cggtaccgag cgcgtgatag aacacgcgta ttccggtgtc tcttcgttga aggttgtagt
     4261 agaagccgct gccatctgcc ttcatcgaca cgccgcgata cagcgcgtgc ggcagttgat
     4321 cgacgtcttt gcgtttgtcg acgtccatca cgtgcagttc agtctcatcc gtaccaccgc
     4381 ggcggacgct gtagacgatc aacttgccgc cgctcgacgc gtcgagcagg ctgatgtccg
     4441 tcgtgtgatc ggggctgagg gtgtgcggat cgatgaggac ttcgtccttg ccgtttagtc
     4501 cctgccgcac gtacaggatc gataagtcat cctcggcgcg tttcttgaaa agaaagtaac
     4561 gcccgtcctg ctcgaagggt gagctcatcg aatcgacgcg cagcaattcc gacaaacgct
     4621 tttggatcat cagccgcgac ggaagcccgt cgagcagcga gtgagtgtat ttgttttgcg
     4681 catcgatcca
//
LOCUS       DASWTX010000358         2530 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_90952, whole genome shotgun sequence.
ACCESSION   DASWTX010000358 DASWTX010000000
VERSION     DASWTX010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2530
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90952"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..683
                     /locus_tag="VGD38_05565"
     CDS             <1..683
                     /locus_tag="VGD38_05565"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HEY0727519.1"
                     /translation="GRLEVADGGTLFLDEVGELTPATQAKLLRVLQERQFERLGGTRT
                     INVDVRVIAATNRNLEEAIKAGTFRQDLYYRLNVISLTLPPLRERREDISLLAYYFLA
                     KYSKKCKRLVSGISPEARNCLTAYDWPGNVRELENAIERAVVLCNSEVIVPDDLPESL
                     LATSPAPQNLPNYHEAVNEMKKKFILQAIEQANGNYTAAAKILGIHSTNLHRLIRTLG
                     LRTSITGG"
     gene            complement(666..1829)
                     /locus_tag="VGD38_05570"
     CDS             complement(666..1829)
                     /locus_tag="VGD38_05570"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEY0727520.1"
                     /translation="MRKIIPFVLVCLLSCVVVCAQSSSKTTALENALQLKLEEWHKAG
                     SFPGATLGVALPNGQSFGLAVGVSDRDTKTPMKPTDRLLAGSVGKTFAAATALQLVKE
                     GKIDLDDKIEKYLGREPWFTRLPNAKDITVRQLMNHTSGLVRYEFKQQFTKDLTANPE
                     KDWKPEELLAYLFDSKAPFEAGKGWDYSDTNYIVLGMIIEKVTGKKFYDEANKRLIKP
                     LKLTNTIPQDGPRLKGVVEGYAGPNNPFGNVDAMIVNGKFAINPQFEWTGGGYASTSQ
                     DLARWARMFYEGKAFSPALLPQVIDGVDAPRLGRETKYGLAAIIRQTTAGTSYGHSGF
                     FPGYMTDMMYFPEQKIAVAVQVNTSVGRNLGKPLSRVLAEMMEVIKAHSTAGD"
     gene            1957..>2530
                     /locus_tag="VGD38_05575"
     CDS             1957..>2530
                     /locus_tag="VGD38_05575"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEY0727521.1"
                     /translation="MERKVASDYPQELLDLFHEYQHGDIDRRTFLDGAAKFAVGGLTV
                     AAIFESLRPNYAWAQQVPADDKRIKVGYETVPSPEGNGSIKGYLARPAKNGKRPVVLV
                     IHENRGLNPYIEDVARRLATSNFIAFAPDGLTSVGGYPGSDEAGAAAFRKVDGKKMTE
                     DFVAAAKWLKARSDSTGKLGAVGFCFGGGMV"
BASE COUNT          529 a          722 c          706 g          573 t
ORIGIN      
        1 gaggacggct tgaagtcgct gatggcggca cgttgtttct ggacgaggtt ggcgagttga
       61 cgcctgcgac gcaggcgaag ctgctgcgcg tcttgcagga acgccagttt gagagactcg
      121 gcggcacgcg aaccatcaac gtcgacgtgc gtgtcatcgc cgccaccaac aggaatttag
      181 aagaggcgat caaagccgga acttttcggc aggaccttta ttaccggctc aacgttatct
      241 cgctcacgtt gcctccgctt cgtgaacgcc gcgaggacat ttctttactc gcctattatt
      301 tcctcgcgaa gtacagcaag aagtgcaagc ggcttgtcag cgggatctcg cctgaagcgc
      361 gcaactgtct aacggcctac gattggcccg gcaatgttcg cgaactagaa aatgcgatcg
      421 agcgcgccgt cgttctctgt aactcagagg tgatcgtgcc tgacgatctt cccgagtctc
      481 ttttagcgac gagcccggcg ccgcagaact tgccgaacta tcacgaagcg gtaaatgaga
      541 tgaagaagaa gttcatcctg caggccatcg agcaggcgaa cggcaactac accgccgcgg
      601 ccaaaatcct cggcatacat tcaaccaacc tgcatcgcct gattcgcacg ctcggtttga
      661 gaacttcaat caccggcggt tgaatgcgcc ttgatcacct ccatcatctc agccaagacg
      721 cggctcaacg gcttgccgag attgcgtccg acgctggtgt tcacttgcac tgccaccgcg
      781 atcttctgct ccggaaagta catcatgtcg gtcatgtagc cggggaagaa accgctgtga
      841 ccgtatgagg ttccggccgt tgtttggcgg atgattgccg cgagaccgta ttttgtttcg
      901 cggcccagcc tgggcgcgtc gacgccgtca ataacttgcg gcagcagcgc cggcgagaac
      961 gctttgcctt cgtaaaacat cctggcccaa cgcgcgagat cctgtgatgt cgaagcgtag
     1021 ccgccgccgg tccactcaaa ctgcgggttg atcgcaaatt tcccgttgac gatcatcgcg
     1081 tccacgtttc caaaaggatt gttcggaccg gcgtaaccct ccaccacgcc tttcaatctt
     1141 ggtccatcct gcgggatcgt gttggttaac ttgagcggtt tgatcagccg tttgttagct
     1201 tcgtcgtaga actttttgcc cgtaaccttt tcgatgatca ttccgagaac gatgtagttc
     1261 gtgtcggaat agtcccaccc tttgccagcc tcaaacggcg cttttgaatc aaacagataa
     1321 gccagcaact cctcgggctt ccagtctttt tccgggttcg cggtcaggtc tttcgtaaac
     1381 tgctgcttga actcgtaacg caccaggccg ctcgtgtggt tcatcaactg ccgcacggtg
     1441 atgtctttcg cattcggcag ccgcgtgaac cacggttcgc gtccgaggta tttctcgatc
     1501 ttgtcgtcga ggtcgatctt gccttctttg actaactgca atgcagtcgc ggcagcgaat
     1561 gtcttgccga cgcttccggc aagcaaacga tcggtcggct tcatcggcgt tttcgtatcg
     1621 cgatctgaaa cccccaccgc gagaccgaac gattggccgt ttggcagcgc cacgccgagt
     1681 gtggcgccgg gaaagctgcc ggccttgtgc cactcttcga gtttgagttg cagtgcattt
     1741 tcgagtgccg ttgttttgct ggaagactgc gcgcaaacca caacgcatga aagcaggcag
     1801 acgagtacga aggggattat ctttcgcatt ttgggtttcc tgtcttctat agagccgagc
     1861 gccaaatgta ccacagtgac tcttgtttaa tgatggccaa gacggctcgg gtcgtgttat
     1921 cacttatgca tccaccaaag acatgaagga gagagaatgg aacgtaaagt agccagtgac
     1981 tacccgcagg aattattgga cctctttcac gaatatcagc acggcgatat cgaccggcgc
     2041 accttcctcg acggtgccgc caagttcgct gtcggcggac tgaccgtggc cgcgatcttt
     2101 gagagcctca gacccaatta cgcgtgggcg caacaggtgc cggcggacga caaacgcatc
     2161 aaggtcggtt acgagaccgt gccatcgccg gaagggaacg gctcgatcaa aggctacctg
     2221 gcccgtcccg cgaagaatgg aaaacgtccc gtcgtgctcg tgattcacga gaatcgcgga
     2281 ctcaacccgt acatcgaaga cgtcgcgcgc cggcttgcca cttccaactt cattgccttc
     2341 gcgccagacg gtctgacttc tgtcggcggt tatccgggca gtgacgaagc gggcgccgca
     2401 gcctttcgca aagtcgacgg caaaaagatg accgaagatt tcgtcgcggc ggcgaagtgg
     2461 ctcaaagcac gttcggattc aaccggcaaa ctcggcgcgg tgggtttttg ttttggtggt
     2521 ggcatggtga
//
LOCUS       DASWTX010000359         1951 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_49514, whole genome shotgun sequence.
ACCESSION   DASWTX010000359 DASWTX010000000
VERSION     DASWTX010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1951
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49514"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..627
                     /locus_tag="VGD38_05580"
     CDS             <1..627
                     /locus_tag="VGD38_05580"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014068.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HEY0727522.1"
                     /translation="VSGPNKLTPPDGPINVAFAISQGATMIDFAGPWEVFQDVMVMNA
                     KDQEGHRHPFRLYTVAANTEPIEASGGMKIIPDYTFANAPAPKVVVVPAQTGSKALHA
                     WLRKVVDATDVTMSVCTGAFQLGRAGLLSGKEATTHHDFFDQFARAFPDVKLKRGLRF
                     VEGAKISTAGGLTSGIDLALRVVERYYGRETAERTAFYMEYQSKGWIV"
     gene            756..1865
                     /locus_tag="VGD38_05585"
     CDS             756..1865
                     /locus_tag="VGD38_05585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727523.1"
                     /translation="MITRRRHWTILICLLLTTIAVYHSTNSSRAQQPANVSETLIPLE
                     GLDPVMLAQGKEVQGDMKFQVTHGKFRYIFASAETKAEFEKNPSRYEIQLDGHCTRMG
                     APTNGNPDLYAVHKERIYVFGSAECQTAFKAAPEKYLEVPAPPKAPATAEMLKRGQEL
                     LNKAVATAGGAKLDQLVSFQKSELRGNQVKSNLLIAFPDSVRVETVRPTFTLISVASP
                     SESFFKVNNSVRPMPEGEQKALYKDLNRDLIVLLRTRTKPDFKAWAAGNDKVGETTVE
                     RVEVELPGFTTVLGIDPATGRVLSQTYRGRGPGGVIGEIAINYSDFRSVEGLLLPFKI
                     SATFDGQAYPALSATIEAATINGQIDADTFKKPKS"
BASE COUNT          451 a          561 c          564 g          375 t
ORIGIN      
        1 gtttcggggc ctaataagct gacgccgcct gacggtccga tcaacgtggc gtttgcgatt
       61 tcgcagggcg cgacgatgat tgattttgcc gggccgtggg aggtgtttca ggatgtgatg
      121 gtgatgaatg cgaaagatca ggagggacat aggcacccgt tcaggcttta taccgtggcc
      181 gcaaacaccg agccgatcga ggcgtccgga gggatgaaga tcattcccga ttacacgttc
      241 gcgaatgccc cggcgccgaa ggtcgtcgtc gttcccgcac agaccggctc gaaggcttta
      301 cacgcgtggt tgcgcaaggt tgtcgacgcc accgacgtca cgatgtccgt ttgcaccggt
      361 gcgtttcagc tcgggcgcgc ggggctcctc tccggaaaag aggccaccac gcatcacgac
      421 ttcttcgatc agtttgcgag agcgtttccg gatgtgaaat tgaaacgcgg tctgcgtttc
      481 gtcgagggag ccaagatctc cacggccggc ggactgacgt caggaatcga tctggcgctc
      541 agagtcgtcg aacgctacta cggccgcgaa acggcggaac ggacagcgtt ctacatggag
      601 taccaaagca agggatggat cgtatagcgc accaagcacc atgtagatca gcgactgttc
      661 aagatcacaa ggaaccttaa cccgctcacg agcgttttga acaactaact gctgctgttg
      721 ctctcacact aaccatactt tcaaaggagg cggtcatgat aaccagacgc cggcattgga
      781 ccatactgat ctgtctgctg ttaacgacaa tcgctgtgta tcacagtacg aactcatccc
      841 gcgcgcagca gccagcgaat gtttccgaaa cgttgatccc gctcgaaggc ctcgacccgg
      901 tcatgctcgc gcagggcaaa gaggtccagg gcgacatgaa attccaggtc acgcacggca
      961 agtttcgcta catcttcgcg agcgctgaga cgaaggcgga gtttgaaaag aatccgtcgc
     1021 gatacgagat ccagctcgac ggccattgca cccgcatggg agcgccgacg aacggcaatc
     1081 ccgatctcta cgcggtccac aaggaacgca tctacgtttt cggctccgct gaatgccaaa
     1141 cagctttcaa ggccgctccc gagaagtacc tcgaagttcc cgcgccgccc aaagcgcccg
     1201 cgaccgccga gatgctcaag cgcggtcagg agcttttgaa caaggcggtc gcaaccgcag
     1261 gcggtgcgaa gctcgatcaa ctcgtgagtt ttcagaagag cgagctgcgc ggtaaccagg
     1321 ttaagagtaa tttgctgatc gcgtttcccg actcggtgcg cgtggaaaca gttagaccaa
     1381 cattcacgct gatctccgtc gcctcgccgt ctgaatcgtt cttcaaagtc aacaacagcg
     1441 tgcggccaat gccggaaggc gagcagaagg cactctacaa ggatctcaac cgcgacctga
     1501 tcgtgctcct gcgaaccagg accaagcccg atttcaaagc atgggccgca ggcaacgaca
     1561 aggtcggcga aacgactgtc gaacgcgtcg aagtcgaact tcccgggttc acgacagtgc
     1621 tcggaatcga tcccgcaaca ggccgcgtgc tcagccagac gtatcgcgga cgcggacccg
     1681 gcggcgtgat cggcgagatc gcgatcaact attcggattt cagatcagtg gaagggttgt
     1741 tgttgccatt caagatcagc gcgacgtttg acggccaggc gtacccggcc ctgtcagcca
     1801 cgatcgaagc agcaacaata aatggtcaaa tcgatgccga cacttttaag aaaccaaagt
     1861 cgtaaattga tcgccgcggt gttcctgttg gcgctgccgc tgaccacttt cgcgcaatcg
     1921 tctgattggg cgcagtgggg tggaccacac c
//
LOCUS       DASWTX010000360         3628 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_90978, whole genome shotgun sequence.
ACCESSION   DASWTX010000360 DASWTX010000000
VERSION     DASWTX010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3628
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90978"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..747
                     /locus_tag="VGD38_05590"
     CDS             <1..747
                     /locus_tag="VGD38_05590"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY0727524.1"
                     /translation="AEMGGKDAIIVADDANLDDAATGVVQSAVGFQGQKCSACSRAII
                     DAKVYDEMLEKIVDRTAKLKLSNPTDPATNLSAVINEKAFKTINSYIEKGKSEGGRVV
                     IGGGSDGEQGFFIEPTVIADVKPGDTIEQEEIFGPVLAVIKAQNYDDALHIANDTQFG
                     LTGAVYSADEAKLHRARKEFHVGNLYLNRKCTGALVGVHPFGGFNMSGTDSKAGGRDY
                     LLLFMQAKVAAEKVGATANRKASAAERTAI"
     gene            764..1699
                     /gene="fmt"
                     /locus_tag="VGD38_05595"
     CDS             764..1699
                     /gene="fmt"
                     /locus_tag="VGD38_05595"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEY0727525.1"
                     /translation="MRIVFMGTPQAAVPTLRRCVEDGHEVVAVWTQPDRPSGRGNKVT
                     FSPVKEFALAQNIPVHQPQRIKTDETKQLFASHDADVAVVVAYGRILPEEFLRAPARG
                     CINVHFSLLPKYRGAAPANWAIVNGDKETGVTTMFMEPTLDTGPILLQRSTKIGETET
                     APELMQRLSETGAELLSETLARLDHLKPQPQDHTQASFAPIIKKEDGLIDWTRPADVI
                     DRAIRGFQPWPTAYTTFNSKGLTIWEAQPLLVMSPGVQPGEVVVALRDELVIQCGKQT
                     ALRVLEVQPEARKRLAARDFINGMHVKIGDRFGTE"
     gene            1686..3002
                     /gene="rsmB"
                     /locus_tag="VGD38_05600"
     CDS             1686..3002
                     /gene="rsmB"
                     /locus_tag="VGD38_05600"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: protein motif:HMM:NF011494.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HEY0727526.1"
                     /translation="MGPNRQISPARRAAFDILREVEAGAFSSILLANEEPKLKAVDRA
                     LTHELVLGVLRWQLWLDKLIEHFTKRGVESLDLAVRLALRIGLYQLRFLERIPASAAV
                     NESVNLVRSAKVSSAAAFVNAVLRRAIREADYDPASGVTDPIEKLAVETSHPAWLIER
                     WTNAFGVEETESFARANNLVPPTAFRVVGGDFSEILDRLRSAGGLVEPSKVAENAWRT
                     SNALSLIRELAVEGKIYLQDEASQLVAQTVDLQPGERALDLCAAPGGKTTLMAARVGD
                     DVATRNSALIVASDLSERRLQTVVRTSALHNLRQIKFLRADAAQSLPFENSVFDRILI
                     DAPCSGTGTLRRNPEIRWRISEADIAELAAQQKLFLNNAARVLKPGGQLVYSTCSVER
                     DENESVIDAFQQHHKEFTLQKTRRTWPHREGTDGFFMASFQLATQQ"
     gene            3023..>3628
                     /locus_tag="VGD38_05605"
     CDS             3023..>3628
                     /locus_tag="VGD38_05605"
                     /inference="COORDINATES: protein motif:HMM:NF015734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PASTA domain-containing protein"
                     /protein_id="HEY0727527.1"
                     /translation="MSLVARASSIFRSIAIVIAIAVVFLFGVATTVYLSLRSPEVKVP
                     DVVGKDRYEAEKILAEADLKFRVRATRPSNQTQPDTVVFQLPRAGEVVKTGQTVAMDV
                     SRPTKEGESPETVTPEENTNENRNTNSSSNDNKPKRPKPKNTNENANGNTNGNKNANA
                     NRPANANANARPSNANTSNANVPRANVNRANTGNSNLRPGSN"
BASE COUNT          829 a         1030 c         1066 g          703 t
ORIGIN      
        1 gcggagatgg gcggcaagga cgccatcatc gtcgcggatg atgcgaacct cgacgacgcg
       61 gcgaccggcg ttgtgcagtc ggcggttggt tttcagggac agaagtgttc ggcgtgttcg
      121 cgtgcaatca tcgacgcgaa ggtttacgac gagatgcttg aaaagatcgt cgaccggact
      181 gctaagctca agctctccaa tccgaccgat ccggcgacca acctgagcgc cgtgatcaac
      241 gagaaggcgt tcaagacgat caactcttac atcgagaagg gcaagagtga aggcggacgc
      301 gtcgtgatcg gcgggggctc cgacggcgag cagggcttct tcatcgaacc gactgttata
      361 gccgacgtca aacccggcga cacgatcgag caggaggaga tcttcggacc ggtgctcgca
      421 gtcatcaagg cgcagaatta tgacgacgcg ttgcacatcg ccaacgacac gcagtttggt
      481 ttgacgggcg ctgtttacag cgccgacgaa gcgaagttgc atcgcgcgcg caaggagttt
      541 cacgtcggta acttgtattt gaatcgcaag tgcaccggcg cgctcgtcgg cgtgcatccg
      601 tttggcggct tcaacatgtc gggcaccgat tcgaaagccg gcggacgcga ttacctgttg
      661 ctcttcatgc aggcgaaagt cgcggcggaa aaagtcggcg cgactgctaa ccgcaaagcc
      721 tcggccgcag agcgaacggc tatttgagcg gtgattgccg gttatgcgaa tcgttttcat
      781 gggaacacct caagccgctg ttcccacgct gcgccggtgt gttgaggacg gccacgaagt
      841 cgtggccgtt tggacacaac cggatcgacc ttcgggccgc ggcaacaagg tcactttttc
      901 accagtcaaa gagtttgcgc tcgcgcagaa catcccggtt caccaaccgc agcgcataaa
      961 aaccgacgaa accaaacagc tcttcgcttc gcacgacgcg gacgtcgccg tcgtcgtagc
     1021 ttatggccgc atcctgcctg aagaatttct gcgcgcgcct gcacgcggat gtatcaacgt
     1081 gcatttttcg ttattgccga aatatcgcgg cgccgctccc gcaaactggg ccatcgtgaa
     1141 cggcgacaaa gagacgggtg tcacgacgat gttcatggag cctacgctcg acactggtcc
     1201 aatactgctt caacgctcca cgaagatcgg cgagacggaa accgccccgg agttgatgca
     1261 acgcctctcc gaaaccggcg ctgagttgtt gagtgaaacc ctggcgcggc ttgatcattt
     1321 gaagccgcaa ccacaggacc acacgcaggc gagctttgcg ccgatcatca agaaggaaga
     1381 cgggctgatc gattggacgc gtccggccga cgttatcgat cgcgcaatac gtgggtttca
     1441 gccgtggccg actgcgtaca cgacgttcaa ttcgaaaggg ttgacgatct gggaagcaca
     1501 gccgttgctg gtgatgtcgc cgggcgtgca accgggtgaa gtggtggttg cgcttcgtga
     1561 tgagctggtg attcagtgtg ggaagcagac ggcgttgcgt gtgctcgagg ttcagccgga
     1621 ggcgcgcaag cggcttgcgg cgcgtgattt catcaatggt atgcacgtga agattggcga
     1681 tcgctttggg accgaataga cagatctcgc ccgcgaggcg cgcggctttt gacatccttc
     1741 gcgaagttga ggccggcgcg ttctcttcga ttctcctcgc taatgaagaa ccaaaactga
     1801 aggctgtaga tcgggcgttg acgcatgagc ttgtgctcgg tgtattgcgt tggcagttgt
     1861 ggctcgacaa gctgatcgag cacttcacga aacgcggtgt tgagagtttg gaccttgcgg
     1921 tgcggctcgc gctgcggatt gggttgtatc agcttcggtt tctggaacgc attccggctt
     1981 cggcggcggt gaatgagtca gttaacctgg tgcgtagcgc gaaggttagt tcggcggcgg
     2041 cgtttgtgaa tgcggtgctg cggcgtgcga ttcgcgaagc tgactatgac cccgcgtctg
     2101 gcgtaacaga tccgattgag aagttagctg ttgaaacgtc gcacccggcg tggttgatcg
     2161 aacgttggac caacgcgttt ggagttgagg aaactgaaag ttttgcgcgc gctaataatt
     2221 tagtgccgcc cacggcgttt cgcgtagtag gaggggattt ttcggagatt ttggatcggc
     2281 tccgaagtgc aggagggctt gttgaacctt caaaggtcgc tgaaaacgcg tggcgtactt
     2341 ccaatgccct gtcattgatc cgcgaactcg ctgttgaagg aaagatctat ctccaggacg
     2401 aagcctcaca acttgtcgcg caaaccgtcg atctccaacc cggcgaacgc gcgctcgacc
     2461 tgtgcgccgc acccggcgga aagacgacgc tcatggccgc gcgagtcggc gacgacgttg
     2521 caactcgtaa cagcgctctg atcgttgctt ccgatctatc ggagagacgc ttgcaaaccg
     2581 ttgtgagaac aagcgcctta cataacttgc gccaaataaa attcctgcgg gccgacgccg
     2641 cccaatcgtt accgttcgaa aacagcgtct tcgatcgcat cctcatcgac gccccatgct
     2701 caggcaccgg cactctccgc cgcaaccccg agatacgctg gcgcatctcc gaagccgata
     2761 tcgccgagct cgccgcccaa caaaaactct ttctaaacaa cgccgcccgc gtcctgaaac
     2821 ccggcggcca gctcgtatat tcaacctgct ccgtcgaacg cgacgagaat gaatcagtaa
     2881 tcgacgcttt tcaacaacac cacaaagaat tcacgctgca aaagacccgt cgcacttggc
     2941 cgcaccgcga aggcaccgac ggctttttta tggccagttt ccagcttgcg acccaacaat
     3001 agcgggtgct agacttcgac gcttgagttt agtcgccaga gcttcatcaa tattccgaag
     3061 tatcgccatc gtcatcgcga tagcggtcgt ttttctcttc ggagtcgcga ccacggtcta
     3121 tctctctttg cgcagcccgg aagtgaaggt gccggacgtc gtcggcaaag atcgatacga
     3181 agccgagaag atactcgcgg aggccgatct caagtttcgc gtgcgcgcca cgcggcccag
     3241 taaccagacg caacccgata cagtcgtgtt tcagttgccg cgcgcgggtg aagtcgtgaa
     3301 gaccggacag acggtcgcga tggacgtcag ccgcccgacg aaagaaggcg agtcgcccga
     3361 gacagtcaca ccagaagaaa atacaaacga gaatcgcaac accaactcga gcagtaacga
     3421 caacaagccc aagcggccaa aacccaaaaa cacgaacgag aacgccaacg gcaatacgaa
     3481 cgggaacaag aacgcgaacg ccaatcgtcc ggctaacgca aacgcgaacg cgcgcccgtc
     3541 gaacgccaac accagcaacg ctaacgtacc gcgcgcaaac gtaaatcgcg caaacaccgg
     3601 aaactcgaat ttgcgacccg gaagtaat
//
LOCUS       DASWTX010000361         4872 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_3946, whole genome shotgun sequence.
ACCESSION   DASWTX010000361 DASWTX010000000
VERSION     DASWTX010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4872
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3946"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1053
                     /locus_tag="VGD38_05610"
     CDS             <1..1053
                     /locus_tag="VGD38_05610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727528.1"
                     /translation="PFANSRNARLIWTQLVKRSPADLRAVARVPAERNAKGIALFALA
                     QLATYRRLKSDEAELQTRNLLSMLLSMKTDGCSGAAWGYNFDWQSRNFFAPRGTPTVV
                     PTAFAARAFIEAAREFKDDEYLKTARSVCDFILNDLPRTFATDTETCFSYAPNTDTRI
                     FNASLLAAEVLAEVGTLTTDAALCAEAERAARYVINHQQPDGSWTYGTNPNQSWIDNF
                     HTAYILFSLKRIISVCSLGTDFQQALERGFDYWKRTFFLADGWPKYYHDDPYPVDAHA
                     AASAIVTLLECRDLDENSSTMARQIASWTINNLRDERGFFYYQRRRFYTVRKPYMRWT
                     QAWMLYALARLLEDNA"
     gene            1058..1534
                     /locus_tag="VGD38_05615"
     CDS             1058..1534
                     /locus_tag="VGD38_05615"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025953.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEY0727529.1"
                     /translation="MPIAPDVILGRDVRIFQPDLVNLYGCTIGDETKIGAFVEIQKNA
                     NIGVRCKISSHTFICEGVEIEDECFIGHGVMFTNDVYPSAVNRDGSLQTEADWQVIKT
                     KVKKRASIGSNATIIAGVSIGEGALIGAGAVVTKDVPDFAIVTGVPARVIGDVRNR"
     gene            1538..2551
                     /locus_tag="VGD38_05620"
     CDS             1538..2551
                     /locus_tag="VGD38_05620"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY0727530.1"
                     /translation="MIKVGVIGYGYWGPNLVRNFMAAPDSAVTRVCDLREERIAPLRK
                     LYPGIKTCSNSTDLINDPQIDAVVIATPVSSHFDLALEALRAGKHVLVEKPLATRSDH
                     ARQLIDEAARRNLVLLVDHTFVYTDAIRKIRELIASGQLGEIYYYDAVRVNLGLFQHD
                     VNVIWDLAIHDLSIMDYVLPEKPVAVSATGMSHIPGQPENVAYITLFFSGAQIAHVHV
                     NWLTPVKVRHTLIGGSEKMILYDDLEPSEKLKVYDKGISVTPRQEDVYKMLVSYRSGD
                     MWAPRLDNTEALQTEALHFVDCIENNRQPDTDGAAGLRMVSMIEAAETSLRDRGRLIE
                     LQL"
     gene            2558..3574
                     /locus_tag="VGD38_05625"
     CDS             2558..3574
                     /locus_tag="VGD38_05625"
                     /inference="COORDINATES: protein motif:HMM:NF015940.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF354 domain-containing protein"
                     /protein_id="HEY0727531.1"
                     /translation="MRLWIDLANSPHVPFFKALAARFVERGHEIETTARAFAETVSLA
                     KSAGFDAQVVGAHGGRQVSAKAGNLMSRAWSLATWARKRNFDLAISHNSYSQILAARA
                     LRIRRVTLMDYEYQPANHLAFRLTSRIIVPASFPARRLRRYGASVGKVRRYHGTKEDV
                     YLADFQPDPAFATELCELGVRPDNVLVLMRPPAHDALYHRFQNKLFDEALALLLGQAN
                     VQVILLPRNETQRATYAAQANDRLIVPAKPLNGANLIAASDLVISGGGTMNREAAALG
                     VPVASIYAGQWAAVDQELIKEGRLQRIATSEDLRKLSVQKKSSSKPRRAVEVIDEVVR
                     LILE"
     gene            3585..>4872
                     /locus_tag="VGD38_05630"
     CDS             3585..>4872
                     /locus_tag="VGD38_05630"
                     /inference="COORDINATES: protein motif:HMM:NF025104.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEY0727532.1"
                     /translation="MRAQRKRQRFTDASAVRVPGRAPKWIIPTVKSLLVVSDALAAAV
                     SFILAFYFREGVSAFAEGSALAWSDQFAPYGALLFFVIGIRLLCFRYGDLYRLRGEFS
                     FVDDGIRLFKATAIGSLLIVAAAFLYRGGFEFRAFSYARGVFVVDFFLVLVSVGAIRF
                     VTRSAQTLARQRQINLIPTLVVGRGPESSLFIREMRERPALGYRVIGVVDTQTPEPHQ
                     IGNYEGVPVIATLEGLPEAIRDSGANEVIIADPQVSGDALFEVMMRCGRRRGVEFRIA
                     PSLFNCLPRKTEIDQIGVLPMIRLFREPLSSGARILKRTFDIVCSALAIILLFPLWLL
                     LALLIKLDSKGPVFYTQERVGMDGRLFLLYKFRTMVANADSELHREYQRAFIAGRAEA
                     NLGNETKPAYKLLADPRITRIGKALRRISLDEVPQLL"
BASE COUNT          986 a         1382 c         1457 g         1047 t
ORIGIN      
        1 ccttttgcga actcacgcaa cgctcgcctg atctggacgc aactcgtaaa acgatcgccc
       61 gccgatctgc gtgccgtagc gcgtgtgccc gcggaacgta acgcgaaagg catcgcgctc
      121 tttgcgttgg cccagctcgc aacctaccgc cgcttaaaat ccgacgaagc agaactgcaa
      181 accaggaacc tgctctcgat gctgctctcg atgaaaaccg acggctgcag cggcgcggcg
      241 tggggttaca acttcgactg gcaaagccgc aacttcttcg cgccacgcgg cacgccgacc
      301 gtcgttccca cagcctttgc cgcacgcgcg ttcatcgaag cggcgcgtga attcaaagac
      361 gatgagtatc tcaagaccgc gcgcagcgtc tgtgatttca ttctcaacga tctgccacgc
      421 acgttcgcaa ccgacacgga aacctgcttc agctacgcgc ccaacacgga cacgcgcatc
      481 ttcaacgcca gcctgctggc agccgaagtg ctcgcggagg tcggcacgtt aaccaccgac
      541 gcagcgttat gcgctgaagc agaacgcgcc gctcgctacg tcatcaatca ccagcaaccc
      601 gacggttcgt ggacgtacgg caccaatccc aatcaatcgt ggatcgacaa cttccacact
      661 gcttacatcc tgttttcact caagcgaatt atctcggttt gttcgttagg cacagatttt
      721 cagcaggctt tggaacgcgg ctttgattac tggaagcgga ctttctttct tgcggacggc
      781 tggccgaaat actaccatga cgacccttat ccggtggacg cgcacgccgc agcgagcgcg
      841 atcgtgactc tccttgagtg tcgtgacctg gacgaaaatt catcgacgat ggcccgccag
      901 atcgcttcgt ggaccattaa caacctgcgc gacgagcgcg gcttcttcta ctatcaacgc
      961 cggcgttttt acaccgtgcg caagccgtac atgcgttgga cgcaggcgtg gatgctgtat
     1021 gctctagcac gtttgctcga ggacaatgcc taattaaatg ccaatcgccc ctgacgtaat
     1081 tctcggacgc gacgtccgca ttttccaacc tgatttggtc aacctctacg gctgcacgat
     1141 cggcgacgaa accaagattg gcgcgtttgt cgagatccaa aagaacgcga acatcggcgt
     1201 gcgttgtaag atctcgtcgc acacttttat ttgcgagggc gtggagattg aagacgagtg
     1261 ttttatcggc cacggcgtga tgttcacgaa cgacgtctat ccgagcgccg tcaatcgcga
     1321 tggctcatta cagacagaag cagactggca agtaatcaaa acgaaggtta agaagcgagc
     1381 gagcatcggc agcaacgcga ccatcatcgc aggggtgtcg attggtgaag gcgcgctgat
     1441 cggcgcgggc gcggtggtga cgaaagacgt gcctgacttc gccatcgtca cgggcgtgcc
     1501 ggcgcgtgtg atcggagacg ttcgcaaccg ttaagacatg atcaaagttg gtgtaatcgg
     1561 ttacggctat tggggcccga acctggtgcg aaactttatg gccgcgccgg attcggcagt
     1621 gacgcgtgtt tgcgatctgc gcgaggagcg catcgcgcct ttgcgcaagc tctatccggg
     1681 cattaagacg tgcagcaatt cgacggatct cataaacgat ccgcagatcg acgcggtggt
     1741 gatcgccacg cccgtgtcgt cgcattttga tctcgcgctc gaggcgttgc gcgcgggcaa
     1801 gcacgtgctc gtcgagaagc cgttggcaac acgatccgat cacgcacgcc agttaatcga
     1861 cgaagcagct aggcgcaatc tggtgctgct ggtggaccac acgtttgtct acacggatgc
     1921 gatacgaaag attcgcgaac tgatcgcgtc gggacagctc ggcgagatct attactacga
     1981 cgccgtgcgc gtgaatctcg gtctctttca acacgacgta aatgtcatct gggatctcgc
     2041 gattcacgat ctctcgatca tggattacgt tctgcccgag aagcccgttg ctgtttcggc
     2101 gacaggcatg agtcacattc ccggtcagcc cgaaaacgtc gcgtacatca cgctcttctt
     2161 ttccggcgcg cagatcgcgc acgtacacgt caactggctg acgcctgtga aggttcgtca
     2221 cacgctgatc ggcggcagtg aaaagatgat tctttacgac gatctcgaac caagcgagaa
     2281 gctcaaggtt tacgacaaag gcatcagcgt cacgccgcgt caggaagacg tttacaaaat
     2341 gctcgtgagc tatcgttcgg gcgacatgtg ggcgccgcgg ctcgataaca cggaagcttt
     2401 gcaaaccgaa gcgctgcact ttgtcgattg catcgaaaac aatcgtcagc cggacaccga
     2461 cggcgccgcg ggcctgcgca tggtgagcat gatcgaagcc gcggaaactt cgctgcgcga
     2521 tcgcggcaga ctaatcgaac tccaactttg atccgcgatg cgtctctgga tcgatctcgc
     2581 aaactcaccg cacgttccgt ttttcaaagc gcttgcggcg aggttcgtcg aacgcggtca
     2641 tgagatcgag acgaccgcgc gtgcgtttgc cgaaacggtg tcactcgcga agagcgcggg
     2701 tttcgacgcg caggtagtcg gcgcacacgg cggacggcaa gtgtccgcga aggcgggcaa
     2761 tctcatgagc cgcgcgtggt cgctcgccac ctgggcacgc aaacgcaatt tcgatctcgc
     2821 catcagtcac aactcgtatt cacaaattct cgctgcgcgc gcgttgcgaa ttcgccgcgt
     2881 cacgttgatg gactatgaat accagccggc gaaccatctc gcgtttcgtt tgacgtcgcg
     2941 catcatcgtg ccggcgagtt ttcccgcgcg gcgtttgcga cgttacggcg cgagcgtggg
     3001 caaggtgcgc cgctatcacg gcacgaagga agatgtttat ctcgcggatt ttcagcccga
     3061 cccggcgttc gccacagagt tgtgcgaact cggcgttcgc ccggataatg tgctggtcct
     3121 gatgcgtccc cccgcgcacg atgccttgta tcaccgtttt cagaacaagc tgtttgacga
     3181 ggcgttggcg ttgttgttgg ggcaggcaaa cgtgcaggtg atcctgctgc cgcgcaacga
     3241 gacgcagcgc gcgacgtatg cggcgcaggc gaacgaccgt ttgatcgtgc cggcaaagcc
     3301 tttgaatgga gcgaacctga tcgccgcgag cgatctcgtg atcagcggcg gcggaacgat
     3361 gaatcgcgaa gccgcggcgc tcggcgtgcc cgtggcgagt atctatgcgg gacagtgggc
     3421 cgcggtcgat caggagttga taaaggaagg ccggttacag cgaatcgcaa cttccgaaga
     3481 cttgcgcaag ttgtcagttc agaagaagtc ttcatcaaaa ccgcgccggg ctgtcgaagt
     3541 gatcgacgaa gtcgtgcgcc tgatcctgga gtaaaagcga gttgatgcga gcgcaacgca
     3601 aacgacaacg atttaccgac gcgagcgctg ttcgtgtgcc cgggcgcgcg ccgaagtgga
     3661 tcattccgac ggtgaagtcg ttgctggtcg tgagtgacgc gctagctgcg gccgtgtcgt
     3721 tcatactcgc gttttatttt cgtgaaggcg tttcggcgtt tgcggaaggc agcgcgctcg
     3781 cgtggagcga tcagtttgcg ccgtacggcg cgttgttgtt cttcgtgatc ggcatccggc
     3841 tgctgtgttt tcgttacggc gatctttatc gactgcgcgg cgagttttcg tttgtcgacg
     3901 acggtattcg actcttcaaa gcgacagcga tcggatcgct gctgatcgtc gcggcggcgt
     3961 ttctgtatcg cgggggtttt gagtttcgcg cgttctcgta cgcgcgcggc gtgtttgtcg
     4021 tcgacttctt tttggtgctc gtcagcgtgg gcgcgatcag gtttgtcacg cgttcggcgc
     4081 aaacgctggc gcggcaacgg cagatcaatt tgatcccgac gctcgttgtc gggcgcggtc
     4141 cggaatcgtc gctgtttatt cgcgagatgc gcgaacgtcc ggcgctgggc tatcgcgtca
     4201 ttggcgtcgt cgacacgcaa acaccggaac cgcatcagat aggaaactac gaaggcgtgc
     4261 cggtgattgc gacgctcgaa ggcttgccgg aagcgattcg cgattcgggc gcgaacgaag
     4321 tgatcattgc cgatccgcaa gtgagcggcg atgcgttgtt tgaagtgatg atgcgttgcg
     4381 ggcgtcgccg cggtgttgag tttcgcatcg cgccgagttt gttcaattgc ctgccgcgca
     4441 agaccgagat cgatcagatc ggcgtgctgc cgatgatccg cctgtttcgc gaaccactct
     4501 cgagcggcgc gcgaatactg aagcgaactt tcgacatcgt gtgctcggcg ctcgcgatca
     4561 tcctgctgtt tccgttgtgg ctgttgctgg cgctgctgat caagctcgat tcaaaaggac
     4621 cggtgttcta cacgcaggaa cgcgtgggca tggatggacg gctgtttctg ctctacaagt
     4681 ttcgcacgat ggtggcgaac gccgattcgg aattgcatcg cgagtatcag cgcgctttta
     4741 ttgccggtcg cgccgaagcg aatttaggaa atgagaccaa gccggcttac aaactgcttg
     4801 cagatccacg catcacgcgc atcggaaagg cattgcgacg tatcagtctc gatgaagtgc
     4861 cgcagctctt ga
//
LOCUS       DASWTX010000362         3218 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_374344, whole genome shotgun sequence.
ACCESSION   DASWTX010000362 DASWTX010000000
VERSION     DASWTX010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3218
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_374344"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..839
                     /locus_tag="VGD38_05635"
     CDS             <1..839
                     /locus_tag="VGD38_05635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727533.1"
                     /translation="SRGPVAETNVNMNVNTNVNANVAPANANAAVAPSTIAAREPDAY
                     RATLVFSAETEGGEKTLGIPTLSAEVAKNGADRRLSFKLPDGSDLIYLERAGVHYAIA
                     PGRKQYAELTPEATGFQLHKLMTPGQLVGYLDRLQGIQFVGEEQLTGRTALKYRYART
                     DQTKTSAGEVRTESFIFIDKDTGLPLRAELCSEASGNVQGARGATVVAEMRDITTNVD
                     PSLFEVPSGLNKVSEQQVRQQVNAISNTIAAVLRTLLTNMNTAPQPSPTATVSPAASP
                     SP"
     gene            868..1608
                     /locus_tag="VGD38_05640"
     CDS             868..1608
                     /locus_tag="VGD38_05640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727534.1"
                     /translation="MRYVVILVLGVLLGAGAAVFFLGIGPARTAPGVAVRPPDGQAPP
                     ATVVIGLEQSFVDAVLATTFSGLGTPTFQLSQNAESDRITPAAFQGGCTNSITLLPEG
                     SGVKTGVQFKNGVVSAPLAFTGSYNFSGQCLQFKGWAQTNIKLYFEEPKQTVYGNVEV
                     EGVNLEGVNPIANTFVTVFVQSAINQRVNPLVLVSEQQLSLLIPVKASNGTVKARAKD
                     VRAEILDGSLKLHLTYEFSGVKGGGAAG"
     gene            complement(1566..>3218)
                     /gene="uvrC"
                     /locus_tag="VGD38_05645"
     CDS             complement(1566..>3218)
                     /gene="uvrC"
                     /locus_tag="VGD38_05645"
                     /inference="COORDINATES: protein motif:HMM:TIGR00194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEY0727535.1"
                     /translation="QYKPRYNVKLQDDKSYPHLKLTINEPFPKVVITRRVQRDGALYF
                     GPFLPASLARRTIDLINRTFQLRTCDIEIDGKAPRPCLEYHIKRCLGPCVKGLCTPEQ
                     YQEAVRDVRLLLEGRKQELADALEARMLEASEDMRYELAAKYRDLRKTVIRLSEQQKM
                     ATTSESDVDIFGYYREGQKLALQLFTMREGNIVGRREFFWEDLSEDAFDPAEFLSEVL
                     AQYYASDYVPREIYVPVDFNDRELLEKALSKRRGRRVRIDAPQRGEKRDMIDLVEKNA
                     KLAFEQRFRVLKPDMKRVLEELQETLELPHFPGRIESFDISHIQGAENVAGMVVCDNG
                     KMNRAEYRKFRIRSVEGVNDVASMREVVTRRYRRLLDEGKPLPDLIMIDGGKGQLNGA
                     AEAMSELGLEAIPMVGIVKPPQRHNDVAYLLMKGREDEPIYLDSHSLILRLLQMIRDE
                     THRFAVTYHRKRRELRDFTSELTAIPGVGDKRKGRLLRHFGSIQRISRAGVSELTPFV
                     GRKTAEEIADHFERQRALAQAAVPPESPDQPAAPPPLTPLNS"
BASE COUNT          664 a          948 c          944 g          662 t
ORIGIN      
        1 gctctcgtgg tccagtggcc gaaaccaacg tcaacatgaa cgtgaatacc aacgtcaacg
       61 cgaacgtggc gcccgcaaac gccaacgccg cagtcgcgcc ttcaacaatt gcggcccgcg
      121 aacctgacgc gtatcgcgca accctcgtgt tcagcgccga aaccgaaggc ggcgaaaaga
      181 cgctcggtat cccgactctt tcagccgaag tggccaaaaa cggggccgac cggcggcttt
      241 cgttcaaact gcctgacggt tccgatctga tctacctcga gcgcgccggc gttcactacg
      301 caatcgcgcc ggggcgcaag cagtatgcgg aactgacacc cgaggccacg ggctttcaac
      361 tgcacaaact gatgacgccg ggccaactgg tcgggtacct ggatcggctt cagggcatcc
      421 aattcgtcgg cgaagaacag ctcaccggac gtacggcatt gaaatatcgc tacgcgcgca
      481 cggaccagac aaagacttcc gcaggcgagg tcagaacgga atctttcatc ttcatcgaca
      541 aagacacggg tcttccgttg cgcgccgagc tatgtagcga agcgagtggt aatgtgcagg
      601 gtgcgagagg cgcgaccgtt gtcgccgaaa tgcgcgacat caccacaaac gtcgatccga
      661 gtctgtttga agtgccgtca gggctaaaca aggtttcgga acagcaggtg agacagcagg
      721 tcaacgcgat cagcaacacg atcgcggcag tgctgcgaac tctgctgacg aacatgaaca
      781 cagcgccaca gccatctcca acggcgactg tttcgccggc ggcgagtcca agtccgtaaa
      841 ggccggttaa gtgaaggagt ttctgaaatg agatacgtgg tcatactcgt tcttggagtg
      901 ctgcttggcg caggcgccgc agtgtttttc ctcggcattg ggccagcgcg cacggcgccg
      961 ggtgttgccg tgcggccgcc tgacgggcag gctccgccgg cgaccgtggt cattggtctc
     1021 gaacagagct tcgtggacgc agtgctcgcg acaacgttct caggtttggg aactccgacc
     1081 tttcaactaa gtcagaacgc ggaaagtgat cgaattaccc cggcagcgtt tcagggtggt
     1141 tgcaccaaca gcatcactct cttgcccgaa ggaagcggcg tcaagacggg agtgcagttc
     1201 aagaatggcg tcgtctcggc gccgctcgct ttcaccggca gctacaattt cagcggccaa
     1261 tgtcttcagt tcaaaggctg ggcgcaaacg aacatcaagt tgtatttcga agagccgaag
     1321 cagacggttt acggaaacgt tgaagtcgaa ggcgtgaacc tcgaaggcgt gaacccgatc
     1381 gcgaacacgt tcgtcaccgt gtttgtgcag agcgcgatca accagcgcgt gaatccgctc
     1441 gtgctcgtga gcgagcaaca gttgtcactg ctgattccgg tgaaggcgag caacggcacg
     1501 gtgaaggcgc gtgcgaagga cgtgcgggcc gagatactcg acggctcgtt gaagctgcat
     1561 ttgacttacg aatttagcgg cgttaagggc ggaggagccg cgggctgatc cgggctctcc
     1621 ggcggcactg ccgcttgggc gagtgctcgt tgacgctcaa agtgatcggc aatctcttcg
     1681 gcggttttac gtccaacaaa cggcgtcaac tcggaaacac ccgcgcgcga gattcgctgg
     1741 attgagccga agtgacgaag cagtcttcct ttccgtttgt ctcctactcc cgggattgca
     1801 gttagttcgg aagtgaagtc gcgcaactcg cggcgtttgc ggtgataagt gaccgcgaaa
     1861 cggtgcgtct cgtcgcgaat catctgcaac agccgcaaga tcagcgaatg cgaatcgaga
     1921 tagatcggtt cgtcttcgcg tcctttcatc aataggtaag cgacgtcgtt gtgacgttgc
     1981 ggcggcttca cgatcccaac catcggaatc gcttccagtc ccagctcgct catcgcttcc
     2041 gcggcgccgt tgagctgtcc cttgccgccg tcgatcatga tcagatcggg aagcggtttg
     2101 ccttcgtcga gcaagcgccg gtagcgccgt gtcacgacct cgcgcattga agccacgtcg
     2161 ttcacgcctt ccacactcct gatccgaaac ttgcgatact ccgcgcggtt catcttgccg
     2221 ttgtcgcaga cgaccatgcc cgcaacgttc tccgcgccct ggatgtgcga gatgtcaaac
     2281 gactcgatgc gccccgggaa gtgcggcagt tcgagagttt cctgcaactc ttccagcacg
     2341 cgtttcatgt ccggcttgag cacgcggaag cgttgctcga acgcgagctt cgcattcttc
     2401 tcgacaaggt cgatcatgtc gcgcttttcg ccgcgctgtg gggcgtcgat gcgcacgcgc
     2461 cgtccgcgcc gtttgctcaa cgccttttcg agcagctcac gatcgttgaa atcaaccggc
     2521 acgtagatct cacgcggcac gtaatccgac gcgtagtact gcgccagaac ctcgctcaaa
     2581 aactccgccg gatcgaaggc gtcttccgac aagtcttccc agaaaaactc gcggcgcccg
     2641 acgatgttgc cctcgcgcat cgtgaacaac tgcaacgcga gcttctgccc ttcgcggtag
     2701 tagccgaaga tgtcgacgtc gctttcggaa gtggtcgcca tcttctgttg ctcggaaaga
     2761 cgaatgacgg tcttgcgcag gtcgcgatac ttcgccgcaa gctcgtaacg catgtcttcc
     2821 gaagcttcga gcatgcgcgc ttcgagcgcg tctgcgagct cctgtttgcg tccttccaac
     2881 aagagtctta cgtcgcgcac ggcttcctga tattgttccg gcgtacacag ccctttgacg
     2941 catgggccaa gacagcgttt gatgtgatac tcgagacacg gccgcggcgc tttgccgtcg
     3001 atctcgatgt cgcaggtgcg cagttgaaac gtccgattga tcaaatcaat cgtccgtcgc
     3061 gctaaactcg ccggcaagaa cggtccgaag taaagcgcgc cgtccctttg cacgcggcga
     3121 gtgatgacca cttttggaaa cggctcgttg atcgtgagct tcaggtgcgg gtacgacttg
     3181 tcgtcctgga gtttgacgtt gtagcgcggt ttgtattg
//
LOCUS       DASWTX010000363         2282 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_91014, whole genome shotgun sequence.
ACCESSION   DASWTX010000363 DASWTX010000000
VERSION     DASWTX010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2282
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91014"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(65..1117)
                     /locus_tag="VGD38_05650"
     CDS             complement(65..1117)
                     /locus_tag="VGD38_05650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727536.1"
                     /translation="MIGSQTISDRVLLPATAERWAIAESARLERALSILLEDAPAAVA
                     CRTRSALETIFGWTLESEWAEVMWSFSRLTGDGFPIEFTFSSTDEGITYDGEVAGPEV
                     PDGQRLLRAFDTLKRLGQPQPPTEIVDLLTRIQASGALSYGAWIGARHHVDGDRYKVY
                     AEVPRSRWYKTRDEFGYLLGPEPLLNNCGIQLRLIGYDPHKRRTELYFRVEQLETLEL
                     ARLLNRAGLGGRLEELLTLLEDCYGCSIGDTIPGANLGFSYSFGSDIKPIAFSLFAVA
                     RSLFGGDESIRKRLLALAMKRGWDVNTYEKLSAPIASRTGRRTRHCVLSFVVPPEGDL
                     SIRVGMSPPDGARDLD"
     gene            complement(1114..2163)
                     /locus_tag="VGD38_05655"
     CDS             complement(1114..2163)
                     /locus_tag="VGD38_05655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727537.1"
                     /translation="MKFVRQEEQKTLKFEYHRQDAVQRTYAPQGFFGLLLSDLIDKSK
                     HFVEVDLDDPFFRVFTVSVEAPIDFQKIGLNSTQIALDYGNPDDAGNHKHGDFIFDAQ
                     NTTPRKFEVFMNASRDTSYQYSTNFHFDPSSGWDGQRFSYEVPAKRTEDRTLLLNPFE
                     SIGFLEVRVFPGRMDAAVIESTDVLLSYQPPDGNPPLEKTINVTPTSEPQFWRIRTDD
                     PTARDYTYSFVHHLKDGTEKTTEPKTSRASMLPVEDPFQRPLKVDFVPTFDPATTRLV
                     FIDVLYEDPDNDYRREERLTLKGNATEPVQFRISLMNPELRTFKYRLTFVGVNNQMNR
                     GPFIETDDTLVNVGQ"
BASE COUNT          502 a          624 c          639 g          517 t
ORIGIN      
        1 acttcgtttt ccctaacagc tatcactgga acaatcctca aacttatcgg tgaccggcga
       61 agcgtcaatc aagatcgcgc gcgccatcag gaggactcat accaacgcgt atgctcaaat
      121 caccttcggg cggaaccaca aaactcaaca cacagtgtct ggtgcgccgg ccagtgcgcg
      181 atgcgatcgg ggcgcttagc ttctcatagg tgttcacgtc ccatcctcgc ttcatggcca
      241 atgctaagag ccgctttcga atactttcat caccaccgaa gagggatctc gccaccgcaa
      301 acaacgagaa cgcgatgggt ttgatgtcag atccgaacga gtagctaaaa cccaggtttg
      361 cgccggggat tgtgtctcct atcgaacagc cgtagcagtc ttccaggagc gtaagtagtt
      421 cctccagtcg cccacccaaa cccgctcgat tcagcaaacg tgcgagctct aacgtttcga
      481 gttgctcgac gcgaaagtag agttccgtac ggcgcttgtg agggtcgtaa ccgatgagcc
      541 gaagttgtat gccgcagttg ttgagcagag gttccggccc gagaagataa ccaaactcat
      601 cccgggtttt gtaccagcgc gagcgcggga cctccgcata aaccttatag cgatcgccat
      661 cgacgtgatg ccgggctcca atccaggcgc cgtaggacaa agctccggac gcttgtattc
      721 gagtcagcag atcgacgatt tccgttggcg gctgaggctg gcccaaacgt ttcaacgtgt
      781 cgaaggcacg caatagccgt tgcccgtccg ggacctcggg acccgcgact tcgccatcgt
      841 aggttatccc ttcatccgtc gaagaaaacg taaactcgat tggaaaacca tctccggtca
      901 agcgactgaa cgaccacatc acttcggccc actctgattc aagagtccag ccaaaaatcg
      961 tctcgagcgc gctacgtgtg cggcaggcaa cggcggcggg cgcatcttcc aggaggatgc
     1021 tgagtgcgcg ttcaaggcgc gcggattcag cgatggccca ccgttctgcc gttgcgggca
     1081 gcaacacgcg atcggagatg gtttgactgc caatcattgc ccaacgttaa cgagcgtatc
     1141 gtccgtctca atgaaaggtc cgcgattcat ctggttgttg acgcccacaa aagttagtcg
     1201 atacttgaat gtgcgcaact cgggattcat cagcgagatc ctgaactgga cgggttcggt
     1261 tgcgttgccc ttgagggtca accgctcttc ccggcgatag tcattgtccg gatcttcata
     1321 aaggacatct ataaagacca gacgggtggt agccggatcg aaggtcggaa cgaaatcaac
     1381 cttgagcggc ctctgaaatg gatcctccac gggcagcatc gacgcgcgcg aagtttttgg
     1441 ttcggtcgtc ttttctgtcc cgtccttcag gtgatgcaca aagctgtacg tgtagtcgcg
     1501 agccgtcggg tcgtcggtcc gtatgcgcca gaactgtggt tctgaagtcg gagtaacatt
     1561 tatcgttttc tccagcggag gattgccatc cggcggttga tacgacagga gcacgtctgt
     1621 cgattcaatc acggccgcat ccattcgtcc gggaaacaca cgcacttcga ggaagccgat
     1681 gctttcgaac ggattgagca gcagtgtcct gtcttccgtg cgtttcgccg gcacttcgta
     1741 ggagaagcgt tgaccgtccc aacctgaact cggatcgaag tgaaagttgg tcgagtactg
     1801 gtaactcgtg tcacgcgaag cgttcatgaa gacttcgaat tttctcggcg tggtgttctg
     1861 cgcgtcgaat atgaagtcgc catgcttatg gttgcctgcg tcgtcagggt tgccgtaatc
     1921 gagtgcaatc tgcgtcgagt tcaggccgat cttctgaaaa tctatcggag cttctaccga
     1981 aacggtgaag acgcggaaga atggatcgtc caaatcgacc tcgacgaagt gcttactctt
     2041 gtcaatcaga tcagacaaca acaagccgaa gaatccttgc ggcgcataag ttcgctgtac
     2101 tgcatcctgc cggtgatatt cgaatttaag cgtcttctgt tcctcctgcc gaacaaactt
     2161 caacttcagc gcgatctccg gtgaacccgc cgttggagtt ggtgtcggtg tcggtgtcgg
     2221 cgtaggagtc ggcgtaggag tcggcgtcgg ggtcggtgtt ggcgtcggag ttggcgttgg
     2281 tg
//
LOCUS       DASWTX010000364         3199 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_27589, whole genome shotgun sequence.
ACCESSION   DASWTX010000364 DASWTX010000000
VERSION     DASWTX010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3199)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3199)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3199
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27589"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..437)
                     /locus_tag="VGD38_05660"
     CDS             complement(<1..437)
                     /locus_tag="VGD38_05660"
                     /inference="COORDINATES: protein motif:HMM:NF024748.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEY0727538.1"
                     /translation="MKLKLLLVVFLICGPTVQAQTTLDEQVKSLVTTFKGKVSLFAKN
                     LDTGETYALNPDERVRTASTIKIAVMIEAFARVHEGKLQWTDEVVLTKEKKVGGSGIL
                     NELSDNLRLTLRDAVNLMMILSDNTATNLTLDVLTTDAVNARM"
     gene            complement(434..1483)
                     /gene="asd"
                     /locus_tag="VGD38_05665"
     CDS             complement(434..1483)
                     /gene="asd"
                     /locus_tag="VGD38_05665"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF006416.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEY0727539.1"
                     /translation="MSRRYRVGILGATGMVGQRFIQLLVGHPQFEVTALAASDRSQGK
                     TYAEACTWRLSDEMPAIVRTMRVQPPAPPLDCDLVFSSLPGEIARETEESFAAAGYPV
                     ISNSSAFRMDEDVPLLIPEVNHEHLGLLERQKLKYPRGGFIVTNPNCSTIMLALALAP
                     LHTAFGVEATVATTLQALSGAGYPGVASLDILDNVLPYIGGEEEKIETETTKILGRFN
                     DARIDPASMAVSAQCHRVNVADGHMAAVRVKFARKVRIEEVLEALTYYRSLPQELGLL
                     SAPFDPIIVRAEQDRPQPKLDRHAGNGMTITVGRLKPDAVLDYRFVVLSHNTIRGAAG
                     AAILNAELLVALGHL"
     gene            complement(1480..2616)
                     /locus_tag="VGD38_05670"
     CDS             complement(1480..2616)
                     /locus_tag="VGD38_05670"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY0727540.1"
                     /translation="MNNFALPKRLQGIEKSVIRQVFDRALPGSINLGLGEPDLWTPDI
                     IREAAIATLTKEQSGYTSHAGLPELRRLIAVQYPYLEENSGRVIVTAGSQEALYLALM
                     VLVDEGDEVLLPNPGFVAYPTIVKMAGGVAKSYRLPRENGFAFDADEFRRALTPQTKV
                     VVCISPSNPTGRTLSRNDLIAIADAVRDHGAYLISDEIYRELYYTPERPESASSFYDR
                     TIVISGLSKSMSMTGWRLGWMGGDEAVINAALVLHGYVTTCASTVSQKASLVAWSNEA
                     EAARAEFRETFQSRRDHLLKLIKTELGLRAVTPEGAFYTMLDVSEFGPSMKVAEALLQ
                     ARVITVPGAAFGDESEGFLRVSFCADHETLSEGVRRIKRGLESS"
     gene            complement(2613..>3199)
                     /locus_tag="VGD38_05675"
     CDS             complement(2613..>3199)
                     /locus_tag="VGD38_05675"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: protein motif:HMM:NF008808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HEY0727541.1"
                     /translation="TYPARPTKIGDNVRIVPGGSTIRDGAYVAPGVVSMPPMFVNAGA
                     YVDEGTMIDSHALVGSCAQIGKRVHISAAAQIGGVLEPVGAMPVIIEDDVLVGGNCGI
                     YEGAIVRERAVLASGTILTGSTPVYDLVRGEIYQRKAGAALEIPAGAVVVPGSRAVQT
                     EQGRNWGLSLYAAIIVKYRDEKTETAVQLEESLR"
BASE COUNT          686 a          977 c          873 g          663 t
ORIGIN      
        1 tccatgcgcg cgttgacggc gtcggtggtc agaacgtcga gagtcagatt ggtggcggtg
       61 ttgtcgctga ggatcatcat gaggttgacg gcgtcgcgca gtgtaaggcg aagattatct
      121 gaaagctcgt tgagaatacc ggagccgccg actttctttt ctttcgtgag gaccacttcg
      181 tcggtccact ggagtttgcc ttcgtgcacg cgcgcgaacg cttcgatcat gacggcgatc
      241 ttgatggtgc tggcggtgcg gacgcgttcg tcagggttga gcgcgtaagt ttcaccggtg
      301 tcgaggttct tggcgaagag actgaccttg cctttgaaag tcgtgacgag tgactttacc
      361 tgttcgtcga gggtggtttg agcttggaca gtaggaccac agattagaaa gacaacaaga
      421 agtagtttga gtttcataag tggcccaggg cgaccagtaa ctccgcattc agaatagccg
      481 cgccggcggc gccgcgaatc gtgttgtgac tcagcacgac aaagcgatag tccagaactg
      541 cgtcgggttt tagtctgccg accgtgatcg tcatgccgtt gcccgcgtgg cggtccagtt
      601 tcggttgcgg acgatcctgt tcggcacgca cgatgatcgg gtcgaacggc gcagaaagta
      661 acccaagctc ctgcggtaac gaacgataat acgttaacgc ctcgagcact tcctcgattc
      721 ttactttgcg ggcgaacttt acgcgcaccg cggccatgtg cccgtcggca acgttcacgc
      781 gatgacactg cgcgctgacg gccatcgatg ccggatcgat gcgcgcgtcg ttgaagcggc
      841 cgagtatctt cgtggtctcg gtttcgatct tctcttcttc gccgccgata tagggcagga
      901 cattgtcgag gatgtcgagt gaagcaacac cgggataacc cgcgccggaa agtgcttgta
      961 aagtcgtcgc gacagtcgct tccacaccga aagcggtgtg caatggcgcg agcgcgaggg
     1021 cgagcatgat ggtcgagcag tttggattgg taacgataaa cccgccgcgt ggatatttaa
     1081 gcttttgtcg ttcgagtaaa ccgaggtgct cgtgattcac ttccggaatc agcagcggca
     1141 cgtcttcatc catacgaaac gcagacgagt tgctgatcac gggataaccg gctgccgcaa
     1201 aactttcttc agtctcacgt gcaatctcgc cgggtaaact cgaaaacacg agatcgcaat
     1261 cgagtggcgg cgcaggtggt tgaacccgca tcgttcgcac aatcgcgggc atttcatcgc
     1321 tcaaacgcca cgtgcaagct tcggcgtaag tctttccctg cgaacgatct gatgctgcaa
     1381 gggcagtgac ttcaaattgc ggatggccca ccagcagttg aataaaccgc tgcccaacca
     1441 tgcccgtcgc gcccaaaatt ccgactcgat acctacggct catgatgatt ccaaacctcg
     1501 ttttattcgt cgcacgcctt cgctcagcgt ttcgtgatcc gcgcagaacg aaacgcgtag
     1561 aaaaccctca ctctcatcgc caaacgccgc gccgggaacg gtgatcacgc gcgcttgcaa
     1621 caacgcctcg gccactttca tcgacggacc aaactcgctc acatcaagca tcgtgtagaa
     1681 cgcgccttcc ggcgtcaccg ctcgcaagcc caactcagtt ttgatcaact tcaacaagtg
     1741 atcgcgtcgc gattgaaacg tctcacgaaa ctccgcgcgc gcagcttccg cttcgttact
     1801 ccacgcgacc agcgacgcct tctgcgaaac agtcgacgca cacgtcgtca cgtaaccgtg
     1861 caacactagc gcggcgttta tcaccgcttc gtcgccgccc atccaaccaa gccgccagcc
     1921 cgtcatgctc atcgacttcg acaggccact gatcacaatc gtgcgatcgt agaacgagga
     1981 cgcagactcc ggccgctcgg gcgtgtagta aagctcgcga tagatctcgt cgctgatcaa
     2041 atacgcgccg tgatcgcgca cggcatcggc gatcgcgatc agatcgtttc gcgagagcgt
     2101 gcgtcccgtc ggattcgacg gactgatgca aacaacaact ttcgtctgcg gcgtcaacgc
     2161 acgacgaaac tcgtccgcgt caaacgcaaa tccattctca cgcggcaagc gataagactt
     2221 cgcgacgcca cccgccatct tcacgatcgt cggatacgcc acaaagcccg gattcggaag
     2281 caacacctcg tcgccttcgt caaccaggac catcaacgca aggtacaaag cttcctgtga
     2341 cccggccgtc acgatcacgc ggccgctgtt ctcttccagg taaggatact gaaccgcgat
     2401 cagccggcgc agttccggca accctgcgtg cgaggtgtag ccgctttgct ccttcgtaag
     2461 agttgcgatc gctgcttcgc gaatgatgtc gggcgtccat aaatcgggct cacccaaacc
     2521 gagattgata ctgccgggca gcgcgcgatc gaagacctgc cggatgacac tcttttcaat
     2581 tccctgcaga cgtttcggta gcgcaaaatt attcaacgta agctttcctc gagttgcacc
     2641 gccgtttccg tcttttcatc ccgatacttc acgatgatcg cggcgtaaag tgaaaggccc
     2701 cagttgcgtc cctgctcagt ttgcaccgcg cgcgaaccag gcacaaccac ggcgccggcg
     2761 ggaatctcca gcgccgcgcc tgctttgcgt tgataaatct cgccacgaac gagatcgtaa
     2821 accggcgtcg aacctgtcag gatcgttccc gacgcgagca ccgcacgttc gcgcacgatc
     2881 gcgccttcgt aaattccgca attcccaccg accagcacat cgtcttcaat gatcacgggc
     2941 atcgcgccca cgggttccaa cacaccgccg atttgcgcgg cggcagagat atgcacgcgc
     3001 ttgccgatct gggcgcacga accgacgagc gcgtgactgt cgatcatcgt tccttcgtca
     3061 acgtaagcac ccgcgttcac gaacatcggc ggcatgctaa caacgcccgg cgcaacgtac
     3121 gcgccatcac gaattgtcga accgccgggc acgatccgca cgttgtcgcc gatcttcgtc
     3181 ggccgggccg gataagtgt
//
LOCUS       DASWTX010000365         4335 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_70867, whole genome shotgun sequence.
ACCESSION   DASWTX010000365 DASWTX010000000
VERSION     DASWTX010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4335)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4335)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4335
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70867"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1442)
                     /locus_tag="VGD38_05680"
     CDS             complement(<1..1442)
                     /locus_tag="VGD38_05680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase family protein"
                     /protein_id="HEY0727542.1"
                     /translation="MASTAPREIASETTIAGWEGFNIGLWQNEIDVRDFIQQNYEPYE
                     HDESFLAPPTERTQKIWDHLNKLFVEERRKGVLDISLTPTSITAHAPGYIDRDNEVIV
                     GLQTEAPLKRAIMPNGGFRMVLSALKTYGYECDPHIVEAFTKYRKTHNDGVFDAYTED
                     VRRCRSSHILTGLPDAYGRGRIIGDYRRVALYGVARLIQHKQEEKRSIDAAMSTDEII
                     RDREELSEQIRALKELQEMAASYGFDISAPARNAREAVQWLYFAYLAAVKEQNGAAMS
                     LGRTSTFLDVYFQRDLRSGAITEEQAQEIVDDFVIKLRIVRFLRTPEYDDLFAGDPTW
                     VTESIAGMGDDGRPLVTKTSFRFLQTLYNRGPAPEPNLTIWYSPRLPDGFRSFASKVA
                     IDTSSIQFESDEIMRSAWGDDGAIACCVSPMRVGKQMQFFGARANLAKCLLYAINGGR
                     DELTGKQIGPANIAVQGDYLKFDEVLGKFE"
     gene            complement(1471..2658)
                     /locus_tag="VGD38_05685"
     CDS             complement(1471..2658)
                     /locus_tag="VGD38_05685"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006083 - acetate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006113 - fermentation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate/propionate family kinase"
                     /protein_id="HEY0727543.1"
                     /translation="MDDYALVLNAGSSSLKFCVFQRPAGDAWRLASRGQIDGIGSTPR
                     LSVKDANDQSLAKKDVKVADGHEAVEALAVWLRSQYGGARVLGVGHRVVHGGAQFKGP
                     TVVNERVLDELHKLIPLAPLHQPYNLAAIEAVVERMPGVPQVACFDTSFHRGQSAVAE
                     LIPLPRELRQQGLQRYGFHGLSYEYIASVLPQVAPDVARGRVIVAHLGSGASMCALRE
                     GKSVDSSLGFTALDGLCMGTRPGSIDPGVVLHLQQGLKLSAKEIETLLYKKSGLLGIS
                     GISNDMRDLLGRSEPAARLAVDYFVYRAAKEIGSLAAVLGGVDALVFTAGIGENSTEI
                     RQRICESSAWLGIELDHAANNERLSKISTSRSKVSVWVIPTNEELMIARHTGALLGLA
                     RAA"
     gene            complement(2674..3606)
                     /locus_tag="VGD38_05690"
     CDS             complement(2674..3606)
                     /locus_tag="VGD38_05690"
                     /inference="COORDINATES: protein motif:HMM:NF008852.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional enoyl-CoA hydratase/phosphate
                     acetyltransferase"
                     /protein_id="HEY0727544.1"
                     /translation="MQAATGTGKYERLLARCEGLAPVPTAVAHPCEVSALAGAIEAGA
                     RGLIVPLLVGPAGKIAETAAAAQLDLANAEIVDVPHSHASAAKAVELIRQGKAEILMK
                     GSLHTDELMSAIVSREGGLRTGRRISHVFIMDVPTYHKVLIVTDAAINIAPTLEDKVD
                     ICQNAIDLAVSLGLDKPKVAILAAVETVTSKMPATLDAAALCKMAERGQIKGGILDGP
                     LAFDNAINAQAAETKGIKSVVAGDPDILLAPDLEAGNILAKQLSFLANADSAGMVLGA
                     KVPVILTSRADSVRSRIASCAVAKLVAHARRAKL"
     gene            complement(3609..>4335)
                     /locus_tag="VGD38_05695"
     CDS             complement(3609..>4335)
                     /locus_tag="VGD38_05695"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY0727545.1"
                     /translation="IGMGVLGLLIGIALFLLIPSERSQSSGGGLKEVARAFAVVFKNP
                     QSILCGLIAGLMFIPTTIFDMIWGVRFLQEAHGLDYGEAVMRSATVPFGWIIGCPLLG
                     LLSDRIGRRKPVIAGSALVLLACLAWILYGPPGVFPPYVLGLIAGIASGAAMLPYTVI
                     KEANPPQFAGTATGVINFINFTFSALLGPVFGRTLQNVSAGAARMELSHFQTTFRPLL
                     YGVAVAVLLTFLLKETGPAAREK"
BASE COUNT          883 a         1284 c         1266 g          902 t
ORIGIN      
        1 ttttcaaact tgccgagcac ttcatcaaac ttgagataat cgccttgcac ggctatgttc
       61 gcgggcccga tctgcttgcc ggttaattca tcccggccgc cgttgatcgc atacaagaga
      121 cacttcgcga gattggcgcg cgcgccaaag aactgcatct gcttcccgac gcgcatcggc
      181 gaaacacaac aagcaatcgc gccatcatcg ccccacgcac tgcgcatgat ctcgtcgctc
      241 tcgaattgaa tggagctggt gtcgatagcc accttcgaag cgaaactgcg gaacccgtcg
      301 ggcaaacgtg gcgaatacca gatcgtcaaa ttgggctcag gcgctggacc acggttgtag
      361 agcgtttgca gaaaacgaaa gctcgttttg gttacgagcg gacggccgtc gtcgcccatt
      421 ccggcgatcg attccgtgac ccacgtcgga tcgccggcga agagatcgtc gtattccggc
      481 gtgcgcagga agcgaacgat gcgcaacttg atcacgaagt cgtcgacgat ctcctgcgcc
      541 tgttcttcgg tgatggcgcc cgagcgcaag tcgcgctgga agtagacgtc gagaaaggtt
      601 gacgttcgac cgagcgacat cgcggcgccg ttctgttctt tcaccgcggc gagataagcg
      661 aagtagagcc actgcacggc ctcgcgcgcg ttacgagcag gcgcggaaat atcgaagccg
      721 taactcgcgg ccatctcctg caattctttc aaggcgcgga tctgttcgct cagctcttcg
      781 cgatcgcgaa tgatctcgtc ggtcgacatc gccgcgtcaa tgctgcgctt ttcctcctgc
      841 ttgtgttgga ttagtcgagc aacaccatac agcgcgacgc ggcgatagtc gccgatgatg
      901 cgtccacggc catacgcatc gggcagtccg gtcaaaatgt gtgagctgcg gcaacgtctt
      961 acgtcttccg tataagcgtc gaagacgccg tcgttgtgag tctttcggta cttcgtaaac
     1021 gcctcgacaa tgtgcggatc acattcatag ccatacgtct tcaaagcgct gaggaccatg
     1081 cggaaaccgc cgttcggcat gatggcgcgt ttgagcggag cttcggtttg gaggccgacg
     1141 attacctcgt tgtcgcgatc gatgtaaccg ggcgcatggg ccgtgatcga agtgggagtc
     1201 agcgagatat cgagcacgcc tttgcggcgt tcttcgacga agagcttgtt caggtggtcc
     1261 cagatctttt gcgtgcgctc ggttggcggc gcgagaaacg attcgtcgtg ttcgtagggt
     1321 tcgtagttct gttgaatgaa atcgcgaacg tcgatctcgt tttgccagag accgatgttg
     1381 aacccttccc aaccggcgat agttgtttcg ctggcgatct cccgcggtgc agtgctggcc
     1441 atcgtcatcc tcccttgtca gttagcagtc tcaagctgct cttgcgagcc cgagcagtgc
     1501 gccggtgtgt cgcgcaatca tcaactcctc gttggttgga atcacccaca ccgatacctt
     1561 gctgcgcgaa gtagaaattt ttgaaagacg ctcattgttc gccgcgtggt ccaactcgat
     1621 accgagccac gctgacgatt cacaaattcg ttggcggatc tccgtggagt tctcaccgat
     1681 gccggcggtg aaaacgagtg cgtcgacacc gccaagcaca gccgccagcg aaccgatctc
     1741 tttcgcggcg cgataaacga agtagtccac ggccaaacga gcggcgggct cgcttcgtcc
     1801 gagcagatcg cgcatgtcgt tgctgattcc cgaaatgccg agcagaccgg atttcttgta
     1861 gagcagtgtt tcgatctctt ttgccgacag ctttagccct tgctgcaaat gaagcacgac
     1921 accgggatcg atcgagccgg gacgcgtgcc catgcacagt ccatcgagcg cggtgaaacc
     1981 gaggctgctg tcgacactct tcccttccct gagcgcacac atgctcgcgc cgctgccgag
     2041 atgcgcgacg atcacacggc cgcgagccac gtccggagcg acctgcggca gaaccgaagc
     2101 gatgtattcg tacgagagtc cgtgaaagcc gtagcgctga agaccttgtt ggcgtaactc
     2161 gcgcggcagc ggaatcagtt cggcgacggc cgattggccg cgatgaaagc tggtgtcgaa
     2221 acaggcgact tgcggaacac ccggcatacg ttcgacgacg gcttcgatag ccgcgaggtt
     2281 gtagggttga tgaagcggtg cgagcgggat cagcttgtgc agttcgtcga gcacacgctc
     2341 gttcaccacg gttggacctt taaactgcgc gccgccgtga accacgcgat ggcccacacc
     2401 cagcactctt gcgccgccat actgcgaacg aagccagaca gcgagcgctt cgactgcttc
     2461 atgcccgtcg gcgactttga cgtctttctt cgcgagactc tgatcgtttg cgtcctttac
     2521 cgacaaccgc ggcgtgctgc cgatcccgtc aatctggccg cgcgacgcga gccgccaggc
     2581 atcgcccgcc ggacgctgaa acacgcagaa cttcaaactc gatgagcctg cgttgagtac
     2641 gagtgcatag tcgtccatcg gcgttttgac tccttacaac ttcgcgcggc gcgcatgggc
     2701 caccagcttc gccacggcac aactcgcgat tcgcgaacgt acactgtcag cgcggctcgt
     2761 gagtatcacg ggcactttcg cgccaaggac cattccggcg ctgtcggcgt tggcgagaaa
     2821 actcaactgc ttggcgagaa tgtttccggc ttcgaggtca ggcgcgagca gaatatcggg
     2881 gtcacctgcc accacagact tgatgccttt cgtctcagcg gcttgcgcgt tgatggcgtt
     2941 atcgaaagcg agtggtccat cgagaatgcc gcccttgatc tgtccgcgtt cggccatctt
     3001 gcaaagcgcg gccgcgtcga gcgtggcggg catttttgaa gtcaccgttt cgaccgcggc
     3061 gagtatcgcg accttgggtt tgtcgagacc gagcgatacc gcgaggtcga tcgcgttctg
     3121 acagatgtct actttgtctt cgagtgtcgg tgcgatgttg attgccgcgt cagtgacgat
     3181 caggactttg tgatacgtcg gcacgtccat gatgaagacg tgactgatgc ggcggccggt
     3241 gcgcagcccg ccttcgcgcg agacgattgc cgacatcagc tcatccgtgt gcagactgcc
     3301 cttcatcagg atctcggctt taccttgcct gatgagttcg acggctttcg cggctgaagc
     3361 gtgactgtgt ggaacgtcga cgatctcagc gttcgcgaga tcgagttgcg ccgcggcggc
     3421 cgtttccgca atcttgcctg ctggtccaac cagcaacggc acgatcagtc ctcgcgctcc
     3481 ggcttcgatg gcgcccgcca gggccgacac ttcacacggg tgagccactg ctgtgggaac
     3541 gggcgccaag ccttcgcacc gcgcgagtag ccgttcgtat tttcctgttc cggttgctgc
     3601 ctgcatcttt atttttcccg cgctgctggt cctgtttcct tcaataggaa cgtcagtaga
     3661 accgcgaccg ctacgccata gagcagcggc ctgaaagtgg tctggaagtg cgacagttcc
     3721 attcgcgccg cgccggctga aacgttctgc aaagtccggc cgaacactgg tcccaacaac
     3781 gcgctgaaag tgaaattaat aaagttgata acgccggtgg cggtgcctgc gaactgcggc
     3841 ggattagctt ccttgattac cgtgtaaggc agcatcgccg cgccggacgc aatgccggcg
     3901 atcaggccca ggacgtaagg cgggaagact cccggtgggc cataaagaat ccacgccagg
     3961 cacgcgagta acacgagcgc ggagccggca atgaccggtt tgcgccggcc aatccgatcc
     4021 gacagtagac cgagcaaagg acaaccgatg atccaaccga acggaacggt ggccgagcgc
     4081 ataacggcct cgccataatc caggccgtgc gcttcctgaa gaaagcgaac gccccagatc
     4141 atgtcgaaga tagtggtagg gatgaacatc aaacccgcaa taaggccgca gaggatcgat
     4201 tgcgggtttt tgaaaacaac ggcgaatgct cgtgcaactt ctttcagccc accaccagat
     4261 gactgtgatc gttcactcgg aatcaaaaga aacagagcga tgccgatcaa caatccgagc
     4321 acgcccattc cgatc
//
LOCUS       DASWTX010000366         2119 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_114146, whole genome shotgun sequence.
ACCESSION   DASWTX010000366 DASWTX010000000
VERSION     DASWTX010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2119)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2119)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2119
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114146"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2107)
                     /locus_tag="VGD38_05700"
     CDS             complement(<1..2107)
                     /locus_tag="VGD38_05700"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0727546.1"
                     /translation="MRKLLLSLFLCFQITPAGLAQQPNLPPPPKPPEQKPAPREPDDI
                     DVVKITTNLVQIDAVVTDRKEMHVTDLRADEVEILENGKPQKITDFSYIRMSRPPAAA
                     KPNENAGPSIPVPPKQPRREEVRRTIALVIDDLRMSFDSVRFTKQALKKFLDEEAQPN
                     DLVAIIRTAGGTGALQQFTSDRNQLYTAVEKLKWVPRIGNSAQAFARIEQETMQIAER
                     NMLDNTNELDDLNQMRKDLFAVGTLGALNYVINGLREMPGRKSVILFSDGLQLFNPSE
                     PTGSSRILNSLQLLLDLANRSSVVINTIDVRGLATFGLTASDNTWNMSWQQVEAKLSQ
                     RKANFFDSQSGLNYLAERTGGIAIRNKNDVSGGVKQIMDDQAGYYLIGYRPDDATFET
                     LNGKTKFHQVALKVKRPGKFTVRTRTGFYGVTDEQLKASNETPQQKLFGALLSPFAAS
                     GVQLRLTSVFSNEAAQGSVLRSFLHIKASDLTFTKEPDGTHKAVFELVSVTFGEDGKL
                     VDQFADQHTINLTEALYQKITRYGFTFNAVVPIKKAGAYQLRTALRDVPSNRIGSATQ
                     FIEVPDVEKDRLATSGLLIRGMPLDRYLSHGGDDKGEDSDPMANTSVRQFRTGSAMIY
                     ALGIYNAKLDKTTGKPNLTIQARLYRNGELVFTGKEVPFELRDQTDPKRLGGGGAIQL
                     GTEMKPGEYVLQIVVSDLLA"
BASE COUNT          414 a          589 c          595 g          521 t
ORIGIN      
        1 tcgccagcag atcggagact acgatctgta acacatactc accgggtttc atttcggtgc
       61 ccaattgtat cgcgccgcca cctcccaatc gttttgggtc cgtttgatcg cgaagctcaa
      121 acggaacttc cttgccggta aaaacaagct cgccgttgcg atacaaacgc gcctgaatcg
      181 tcaggtttgg cttgcccgtc gtcttgtcga gcttcgcgtt gtagatcccc aacgcgtaaa
      241 tcatcgcgct tccggtgcga aactgccgca cggaagtgtt cgccatcggg tcggaatcct
      301 cgcccttatc gtctccgccg tgcgaaagat agcggtccag aggcattccc ctgatcagca
      361 accccgaagt cgctaagcga tccttctcga cgtcgggcac ctcgatgaac tgtgtcgccg
      421 atccgatgcg attactcggc acatcgcgca gcgcagttct gagttgataa gcgccggcct
      481 tcttgatcgg cacgacggcg ttgaacgtga aaccataacg cgtgatcttc tggtacagcg
      541 cttccgtcag gttgatcgta tgctggtcgg caaactggtc cacgagcttt ccgtcttcgc
      601 caaacgtcac cgacacgagc tcgaacaccg ctttatgcgt cccgtcgggt tctttagtaa
      661 acgtcaaatc gctcgctttg atatgtaaga aggagcgcaa caccgaaccc tgcgccgctt
      721 cgtttgaaaa caccgaagtc aaacgcaact gaacgcccga agccgcaaaa ggagaaagca
      781 aggcgccgaa gagtttttgc tgcggagtct cgttcgacgc ttttaactgc tcgtcagtca
      841 caccgtagaa accggttctc gttcgcacag taaacttgcc cggccgtttt actttgagcg
      901 cgacttgatg aaacttcgtc ttgccgttca gagtctcgaa ggtcgcatcg tcgggacggt
      961 aaccgatcag atagtagccg gcttggtcgt ccatgatctg cttgacgccg ccgcttacgt
     1021 cgttcttgtt acgaatcgcg atgccaccgg ttcgctcggc gagatagttc aaaccactct
     1081 gtgaatcgaa aaagtttgcc ttccgctggc tcaattttgc ttcgacctgc tgccagctca
     1141 tgttccacgt gttatcggag gcagtcagtc caaacgtcgc cagcccgcgc acgtcgatcg
     1201 tgttgatgac gaccgaagag cggttggcga ggtccagcag cagttgcagc gaattcagga
     1261 ttcgcgaact gcccgtcggt tctgacgggt taaagagctg caaaccatcg gagaaaagaa
     1321 tgaccgactt gcggccgggc atctcgcgga gtccgttgat cacgtagttc aacgcgccga
     1381 gcgtgccgac tgcaaacagg tccttccgca tctggttgag atcgtcgagt tcgttggtat
     1441 tgtcgagcat gtttcgctcg gcgatctgca tagtctcctg ttcgatccgt gcaaatgcct
     1501 gggcgctgtt tccgattctc gggacccact tcagtttttc gactgcggtg tagagttggt
     1561 tacggtcaga agtgaattgc tgtagcgctc ccgtgcctcc ggcggtgcga atgattgcga
     1621 ccagatcgtt tggctgggcc tcttcgtcca aaaacttctt caacgcttgt ttcgtgaaac
     1681 ggacgctgtc gaacgacatg cgcaagtcgt cgatgacgag cgcgatcgtg cgccgcactt
     1741 cttcgcgtcg cggttgcttc ggtggaacag gtatcgatgg accagcgttt tcgtttggtt
     1801 tggcggccgc gggagggcgc gacattctta tgtaagagaa gtccgtgatc ttttgcggct
     1861 tgccgttctc gagtatttca acttcgtccg cacgcagatc cgtaacgtgc atttcttttc
     1921 ggtccgttac taccgcgtcg atctggacca ggttggtcgt gatcttgacg acgtcgatgt
     1981 cgtcgggttc acgaggcgcc ggtttttgtt cgggcggttt cggcggtggc ggcaggttgg
     2041 gttgttgggc caacccagcc ggcgtgattt gaaaacagag gaaaagtgag agcagcagct
     2101 ttcgcatcgg ggggctcct
//
LOCUS       DASWTX010000367         1701 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_114185, whole genome shotgun sequence.
ACCESSION   DASWTX010000367 DASWTX010000000
VERSION     DASWTX010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1701)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1701
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114185"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            104..>1701
                     /locus_tag="VGD38_05705"
     CDS             104..>1701
                     /locus_tag="VGD38_05705"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0727547.1"
                     /translation="MPKPTHPALRRLEDVETPAFAAEVAPFISSLNTPLKNTSITARV
                     DHQFSETHNSSFVYQSGRLTNLRSFGGGNRLADSLQARTRNSDAISYSDNLVLSSKVV
                     NQLRFQYSRLAPSFKTRKDDKPVVLITLNDPSFSGTLVAGSSTLGGSDRREHRVQLQE
                     VLSLVHGNHSLKFGVDVHHVRSTFVDLSDLTGTFSFSSAGDFLAGVPSRYRRNFQSSS
                     TQTNTYAGFFVQDEWQVHPRALLSYGLRYERETILHDPNNLGPRFSLAYSPLQSAKIV
                     LRFGGGLFFNRPLLRTIDDFTLGQQQRFFDTNTLRDPLTGKLLTAEQRRAFIAANIRF
                     PETLRADSELVRQFGVLNSDFLRRLDPALRIPESYQFNAGVERDLGRGYSVEANFSFT
                     RGIHLWREFNANAPVLPSDYNNFTEFLASRDFANFANPLTTLRPLFNSGNAGELVRFG
                     HSVFNPENPNTVGRVIEFGVPVSLMNLTSTSSTMLDAALAALNHLRPDPSRGEIEQLI
                     SAGTSFYRGLTLELRKRFDPSGRCA"
BASE COUNT          353 a          543 c          418 g          387 t
ORIGIN      
        1 gttgcgacac acggtcttct tcctctctta cgagtctagc aaaacactcg acagcgccct
       61 catcgacacg cttgtcccac ttgaacaaat cggtgtttat cccttgccca agccgactca
      121 tcccgcgcta cgccggctcg aagatgtaga gacaccagcg ttcgctgctg aagtcgcacc
      181 cttcatttca tcgctcaaca cacccctcaa aaacacgagc atcaccgcac gtgtggacca
      241 tcagttcagc gaaacacaca acagctcatt tgtttaccaa tccggccgcc tcaccaatct
      301 gcggtcgttc ggcggcggca atcgtctcgc cgactcacta caagcacgaa cgcgaaactc
      361 cgacgcgatc tcttactccg acaacctggt gctcagttca aaggtcgtca atcaacttag
      421 atttcagtac tcacgccttg cgccttcatt caaaacccgt aaggacgaca aaccggtcgt
      481 tctaatcacg ctgaacgacc cgtctttttc cggcacgctc gtggccggtt catcaacctt
      541 aggcggtagc gaccgacgag aacacagagt ccagctacag gaagttcttt cgctggtcca
      601 cggaaatcat tctttgaagt tcggcgtgga cgttcaccac gttcgctcaa ccttcgtcga
      661 cttatctgac ttgaccggca cattcagctt ctcaagtgcc ggcgattttc tcgccggtgt
      721 tccgagccgc taccgtcgga actttcagag ctcatcgaca caaacaaaca cctacgccgg
      781 tttcttcgtg caggacgaat ggcaggtaca tccacgcgcg cttctcagtt acggcctccg
      841 ttacgagcgc gaaacgattc ttcacgaccc aaacaactta ggcccgcgct tctccctcgc
      901 ctattcgcct ttgcaatctg cgaagatcgt cctccggttt ggcggaggac tcttcttcaa
      961 ccgcccgctg ctgcgtacga tcgacgactt tacgctcggc cagcagcaac gcttcttcga
     1021 caccaacacg ctgcgcgatc cgctcactgg aaaactgctg accgccgagc agcgacgcgc
     1081 tttcatcgcc gcgaacattc gctttcccga aacattgcgc gcggattcgg aactggtgcg
     1141 gcagtttggc gtcttgaata gtgatttcct gcggcggctg gatccggcgc tgcgaattcc
     1201 cgagagttat cagttcaacg ccggcgtcga gcgcgatctg ggccgtggct attccgttga
     1261 agcaaacttc agcttcacac gcggcataca tctgtggcgc gagttcaacg caaatgctcc
     1321 ggtactgcct tcggactaca acaacttcac cgaatttctt gcttcgcgcg acttcgcgaa
     1381 cttcgccaat ccgcttacga cgctgcgccc gcttttcaac tccggtaacg ccggtgaact
     1441 agtaaggttt ggtcacagcg tgttcaaccc cgagaatccg aacactgtcg ggcgtgtgat
     1501 cgagtttggc gttcctgtgt cgttgatgaa tctgacgagc acgtcgtcga cgatgctcga
     1561 cgcggcgctg gcggcgctga atcacttgcg gcccgatccg agccgcggcg agatcgagca
     1621 actgatctcg gcggggacta gtttctatcg cgggcttacg ctggagttgc gcaagcgttt
     1681 tgatccaagc gggcgttgtg c
//
LOCUS       DASWTX010000368         6627 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_156236, whole genome shotgun sequence.
ACCESSION   DASWTX010000368 DASWTX010000000
VERSION     DASWTX010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6627)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6627)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6627
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156236"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..519
                     /locus_tag="VGD38_05710"
     CDS             <1..519
                     /locus_tag="VGD38_05710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727548.1"
                     /translation="GDGNADAAIASYGPSQVVIVEFNTPQLAGENDRRITARIQELWK
                     LGQPAPTAYKRVGNYSVFVFNAPDDQTAKQLIDQVHYEQVVSWLGENPNILRRAEERY
                     INTTLAVLVTVLKASGYALIACLSLGGLVGALLFSYRRSQQKDFNAYSDAGGMMRLNL
                     DDMSADLSQRRK"
     gene            complement(932..2056)
                     /locus_tag="VGD38_05715"
     CDS             complement(932..2056)
                     /locus_tag="VGD38_05715"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY0727549.1"
                     /translation="MTPELRALFPITQRAVYLNHAAVSPPPTPAIQAVEAQLRDVHEN
                     GSVNFLSWLDVKERARGLLAGLLGARPEQVAFVRNTSDALSTVANGFTWKPGDNIVTF
                     RREFPSNIYPWLRIRDAFGVEVRMCEEREGKIDLQELEGLVDQKTRIIAISHVQFASG
                     FRIDLERLGRIARQHDALLAVDVIQSVGVIPIDVGAELVDVAAGAGHKWLLSPEGVGY
                     LYLSDRARERIEPTLVGWVSVPNPEDHSNFEQGWNKSTLAWETGTGPAALIHGFKASL
                     DLLHEYGPARIAVYLEELTDHLCERLRTKPYQIVSSREAGEKSQIVCIRHTGSISAMA
                     LYARLKQQNIITAPRGDRLRIAPHLYNTPGEIDQLVAALP"
     gene            complement(2073..3110)
                     /locus_tag="VGD38_05720"
     CDS             complement(2073..3110)
                     /locus_tag="VGD38_05720"
                     /inference="COORDINATES: protein motif:HMM:NF017864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HEY0727550.1"
                     /translation="MSAEQLVEVRRGSITESWHRGHVIAIEPDGNVVAHLGAPQTTVT
                     FLRSSAKPFQALPLLTSGAADRFDFTDREVAIACASHNGEPIHTKLVTSMLEKIGLGP
                     EALKCGAHEPYGVEAARVLRERGEAPNALHNNCSGKHAGMLALALHLGAPIETYNRAE
                     NPVQLAVGKAVAQFTGMPVEDMAVAVDGCAVPVFGMTIKTMALAYARLVSPPPSFDNA
                     TRRACERIMHVMSSYPELIGGTSDRLDTEIMRAAPGRLISKVGAEGVYTAGIKPCEEW
                     PRGLGVALKIEDGDDRRARPTVVVESLRQLGVLKDESLEAVARYAFFPVLNRPGDVVG
                     EIVAKFELNRP"
     gene            complement(3198..3728)
                     /locus_tag="VGD38_05725"
     CDS             complement(3198..3728)
                     /locus_tag="VGD38_05725"
                     /inference="COORDINATES: protein motif:HMM:NF018437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3D domain-containing protein"
                     /protein_id="HEY0727551.1"
                     /translation="MKVYSIFSGSALIGAALLSSSLLFSARTLSAETLPSQQTQQPNS
                     KPTTADTTAPVALDVPSPGSLGKDIAEEERYVVPPTSYVATAYSLRGRTASGQMVAKG
                     LIAADPRHLPLGSRVRIEAGAYSGEYLVADTGGLVRGRRIDIWTPSSREAMRFGRRTV
                     KLTVLSFGARKRASRS"
     gene            complement(4027..4650)
                     /locus_tag="VGD38_05730"
     CDS             complement(4027..4650)
                     /locus_tag="VGD38_05730"
                     /inference="COORDINATES: protein motif:HMM:NF012345.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HEY0727552.1"
                     /translation="MLVYLVDNTINGQGDSPREIRAVLGRLIPGVEILTEPFHSVSLE
                     RVRSLKPSHIILSGQSHPWDNYTPESLAGVFDVIKQASQPILGVCGGHQQIALAYGAE
                     VGLMERLEPGEGYQGAKRERGFFPIDNTGEGLFKGLPSNITVWHSHCDEVKNLPDGFR
                     RTASNETCPIQAMQQKGRRVYGVQFHPELFDEEHPEGRKIVENFLAL"
     gene            complement(4652..5860)
                     /locus_tag="VGD38_05735"
     CDS             complement(4652..5860)
                     /locus_tag="VGD38_05735"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY0727553.1"
                     /translation="MFKTLPIVVLLAACCFLSACGGKVITGTEAKPQPPPPPKIPTSV
                     PAWLGNESRNFYGTGPWSDAPLEIVWEFETKAISGRLHKDPWGGSSWPGQPSVDEQHV
                     YFGSADGNLYCLDKQTGALVWKFKTEDSLKATPTIAGDRLIASGLDHYIYCINARDGS
                     LIWKYKTGFEVDCSAAVLQDRVYFGGEDGFFYALNLADGSLIYKTERLGSMEGSFSVD
                     GDRAYIGTEQGDLFCLNLADGSTIWKARIGADSDSTPAVANGFVYTAAENGVVYSFRQ
                     SNGELVWKYQATGGTTKDRSGFWASPIVAKGRVHIGSSNGYLYALSADKGEVVWRYKA
                     RGSIWGTSPLVDGRLIFGDKAGWIHSVDAADGSPISELKIGDNINATPAILGGRIYIG
                     AFNGKLYCLK"
     gene            complement(5866..>6627)
                     /gene="dapF"
                     /locus_tag="VGD38_05740"
     CDS             complement(5866..>6627)
                     /gene="dapF"
                     /locus_tag="VGD38_05740"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HEY0727554.1"
                     /translation="FARRICNRHYGAGGDGIAIISKSETEDADFNCRIFNPDGSEAGL
                     SGNGTRCAVAYLYHAGHWSKDELRLSTKTGLKRYFPRGQVALGKYLFESELGHPKFDS
                     RSIPMSISPPLDQVIGYVLPVEGEPVVITAMQMGNPNCCIFVDDFDALNWRRIGKIIE
                     THPQFPDRTNVVFVRVRERNLIELRIWERGVGETTASGTCSCAGAVAAMINEKTDRDV
                     RVVMEGGEVRIHWRPDGEVVITGTAELVYTGDWLA"
BASE COUNT         1397 a         1997 c         1816 g         1417 t
ORIGIN      
        1 ggcgacggca acgccgacgc cgcgatcgca tcgtacggcc cgagccaggt cgtcatcgtt
       61 gaattcaata caccacaact cgcaggcgaa aacgaccggc gcatcaccgc gcgcattcag
      121 gaactctgga aactgggcca accagcaccc accgcttaca agcgcgtcgg taactattcc
      181 gttttcgtct tcaacgcgcc tgacgaccaa acagccaagc agctcatcga ccaggttcac
      241 tacgaacagg tcgtctcgtg gctcggcgaa aacccaaaca tccttcggcg cgccgaggaa
      301 cgttacatca acaccactct cgccgtgctg gtcactgtcc tgaaagcgtc aggctatgcg
      361 ctcatcgctt gtttgagctt aggtggtttg gttggcgcgc tgctctttag ctaccggcgc
      421 tcgcagcaaa aggatttcaa tgcttattcg gatgcgggtg ggatgatgcg cttgaacctc
      481 gatgacatgt ccgcggatct ttctcagcgc cggaagtaat tactggtcaa aaattattta
      541 cgcacaaaca aatgcgggct gctgattttt cttgggaggc tcccccaagc cccgtcaaga
      601 cgacaatcag cagcaccgct attattgctc ttctactgcg ttacaagcgc tactccgttc
      661 ccccaaaaga gtcaatcact tgttttttat aactgtgaga ggatgcctcc cccaaagcct
      721 ccactcaccg cagttttctg agcctgaccc gatttaccct tatctaccct tcttgttctg
      781 tttcctctat tggcaacgtc tgtgccatca acctgttaag cccgaaagcg ccgatttgag
      841 tgagaatcta tacgcgacta agcgaattga gcgacaggtt cgtacttctt caatacaaga
      901 cctacagtac aaacgaacga taatcgctcg gttacggtag cgcggcgacg agttgatcga
      961 tctcgccggg cgtgttgtag aggtgagggg cgatccgaag gcgatcacct cttggtgctg
     1021 tgatgatgtt ttgttgcttg agtcgcgcgt agagcgccat cgccgagata gagccggtgt
     1081 gacgaataca aactatctga gatttttcgc ccgcttcgcg cgaactgacg atctgatacg
     1141 gctttgtacg caaccgctca caaagatgat cggtaagctc ttcgagataa accgcgattc
     1201 gcgccggacc atattcgtgc agcaagtcta ggctggcttt aaagccgtga atcaacgccg
     1261 ctggtccagt gcccgtttcc cacgcgagcg tgctcttgtt ccagccctgt tcgaagttgg
     1321 aatggtcttc cgggttcggc acgctgaccc agccgacgag tgttggctct attcgttcgc
     1381 gcgcgcgatc cgagaggtac aggtaaccaa cgccttccgg gctcagtaac cacttgtgac
     1441 cagcgccggc tgcaacgtcc accaactcag cgccaacgtc gatcggtatc acacccaccg
     1501 actggatcac gtccacggcc agcaatgcgt cgtgctgccg cgcgatgcgc cccaagcgtt
     1561 cgaggtctat tcggaaccct gacgcgaact gcacgtggct gatcgcaatt attctggtct
     1621 tttgatcaac cagaccttcc agctcttgta aatcaatctt tccctcccgt tcttcacaca
     1681 tgcgaacttc cacgccgaat gcgtcgcgta tgcgcagcca cggatagatg ttcgacggaa
     1741 actcccgccg gaaggtgacg atgttgtcgc ctggcttcca cgtaaaaccg ttggcgactg
     1801 tcgagagcgc atcggaggtg tttcgaacaa acgcgacctg ctccggccgc gcacccagca
     1861 gtcccgccag cagcccgcgc gcacgctctt tcacgtccag ccagctaaga aaattcactg
     1921 agccgttttc gtgaacgtct ctgagttgag cttcgactgc ctggatggca ggcgtgggcg
     1981 gcggtgagac cgcggcgtga ttcagataaa ccgcgcgctg cgtgattgga aacagcgcgc
     2041 gcaattccgg cgtcattgca ttcgtttccc agctaaggcc gattcaattc aaacttcgct
     2101 acgatctcgc cgaccacgtc gcccggccgg tttagcactg gaaagaacgc ataacgcgcc
     2161 accgcttcca gcgattcatc cttcaacacg ccgagctgtc gcaacgattc gacaaccacc
     2221 gtcggccgcg cgcgccggtc gtcgccatcc tcgatcttca acgccacgcc taaacctcgc
     2281 ggccactcct cgcacggctt gatgcccgcg gtgtaaacac cttccgcgcc gactttcgaa
     2341 atcaaacgcc cgggcgccgc ccgcatgatc tccgtgtcga gcctgtcgga ggtgcccccg
     2401 atcagttccg gataagaact catcacgtgc atgattcgct cgcacgcccg gcgcgttgcg
     2461 ttgtcaaagc tcggcggcgg cgagaccagt cgcgcgtacg cgagcgccat cgtcttgatc
     2521 gtcatcccaa acaccggaac cgcgcagccg tcgaccgcga cggccatgtc ttcaacgggc
     2581 atgcccgtaa actgcgccac agcttttccg accgcgagct gcacaggatt ttcggcgcgg
     2641 ttgtaagtct cgattggcgc gcctaaatgc agcgcgagcg ccaacatgcc ggcgtgttta
     2701 cccgaacagt tgttatgcaa agcgttcggc gcttcgccac gctcgcgaag cacacgcgcc
     2761 gcttccacgc cgtacggctc gtgagctccg cacttcagcg cttccggacc gagcccgatc
     2821 ttctcgagca tcgacgtgac cagcttggtg tggatcggtt cgccgttatg cgacgcgcac
     2881 gcgatcgcaa cttcccggtc ggtgaaatca aaccggtcgg cagcaccgga agttaacagc
     2941 ggcaacgctt gaaacggttt ggccgacgag cgcaggaaag tgaccgtggt ctgcggcgca
     3001 cccaaatgcg ccaccacatt accgtccggc tcaatcgcga tcacatgacc gcgatgccat
     3061 gactcggtga tactgccgcg gcggacttct acaagttgtt cagcagacat ttgcgcggaa
     3121 tcttaacacg ctgaacatgg aaataggtcc tatatgacct ataggaccta tgctgcaaga
     3181 actttgaccg gtggttgtta cgagcgcgaa gcgcgtttcc gggcgccgaa gctcaacacc
     3241 gtgagcttca cggtgcgcct gccaaagcgc atcgcctcac gcgagctcgg ggtccagatg
     3301 tcgatgcgac ggccgcggac caatccgccg gtgtccgcca cgagatactc gccgctgtaa
     3361 gcacccgctt cgattctgac acgcgatccc aaaggcaggt gccgcggatc cgccgcgatc
     3421 aatcccttgg cgaccatctg tccactcgcg gtgcgcccgc gcagactgta cgcggtggca
     3481 acgtaagagg tcggaggtac aacgtagcgt tcttcttccg caatgtcctt gcccagactt
     3541 ccaggcgaag gaacatcgag ggcaactgga gcggtagtgt ctgctgttgt tggtttactg
     3601 tttggttgtt gggtttgctg agatggaagc gtttccgcag agagagtacg ggcggaaaac
     3661 aataaagaac tgctcagaag tgctgcgcca atcagcgcac ttccgctaaa gattgaatag
     3721 actttcaaat tcgggtctcc tgtccgaagt tatcacctgc ctttcagcgt cctgcgcgag
     3781 tccgttcttt cctatgactc gtcccctggc tctaggagtc tctattgacg tcagccgagg
     3841 ttgggggctt gcatccttga tgcggtgcgc tgaaagtact ttccttgttc ttaaaaaaga
     3901 aaaacgagca ataagctcgt tattccggga aggaggctag cagacgggtg gaccaaaagt
     3961 ccagccgagc cgtgtcagtt tcgtgataaa tatcactaaa accgcattgt ttttacgttg
     4021 cagcaactac aaggcgagga agttctcgac aattttgcga ccttcggggt gttcttcgtc
     4081 gaagagttcg ggatgaaact ggacgccgta aacacgccgt cctttctgct gcattgcctg
     4141 gatcgggcaa gtctcgtttg aggcagtgcg gcgaaacccg tcaggtaaat tttttacttc
     4201 gtcacagtgt gaatgccaga cggtgatgtt cgaaggcaaa cctttgaaca gtccttcgcc
     4261 ggtgttgtcg atcggaaaga agccacgctc gcgtttggcg ccctggtaac cctcacccgg
     4321 ttcgagccgc tccatcaatc caacctccgc accgtacgcc agcgcgatct gctggtgacc
     4381 accacacacc ccgagtatcg gctgcgacgc ctgcttgatg acgtcaaaca ctcccgcgag
     4441 cgactccggt gtgtagttgt cccacggatg actctggccg ctgagaatga tgtgcgacgg
     4501 cttcaggctg cgcacgcgtt cgagcgaaac gctgtgaaag ggttcggtga gaatctcaac
     4561 gccgggaatc aaacggccga gcaccgcgcg aatctcacgc gggctgtcgc cttggccgtt
     4621 gatcgtattg tcgacgaggt aaaccagcaa gttacttcag gcagtaaagc ttcccgttga
     4681 atgcgccgat ataaattcgg cctccgagta tcgccggagt cgcattgata ttatcaccaa
     4741 tcttcaactc gctgatcggc gaaccgtcgg cggcatcaac ggaatgtatc caaccggcct
     4801 tgtcgccgaa gatgagacgg ccgtcgacca acggtgacgt accccaaatc gaaccgcgtg
     4861 ctttgtaacg ccagacgacc tcgcctttgt cagccgagag cgcatacaag tagccgttgc
     4921 tcgaaccgat gtggacgcgc cctttcgcga cgatggggct cgcccaaaaa ccactgcggt
     4981 ctttcgtcgt gccgcccgtc gcctggtatt tccaaacgag ttcgccgttt gactggcgga
     5041 aactgtagac gacgccgttt tcagcggccg tgtaaacgaa gccattcgcg accgcgggcg
     5101 tcgaatcgga atcagcgccg atgcgtgctt tccaaattgt cgagccgtcg gcgagattca
     5161 ggcagaacag atcgccttgt tcggttccga tgtaagcgcg gtcgccgtca acggaaaaac
     5221 ttccttccat cgaaccgagc cgctcggttt tgtaaatcaa cgagccgtcc gcaagattca
     5281 gtgcgtagaa gaacccgtct tcgccgccga aataaacgcg atcctgaagg acggcagcgg
     5341 agcaatcgac ttcaaaacct gtcttgtact tccagatcaa cgaaccgtcg cgggcgttga
     5401 tgcagtagat gtaatgatcg agcccgctgg cgatgagacg gtcgccggcg atcgtcggcg
     5461 tcgctttcag actgtcttca gttttgaact tccaaaccag cgcgccggtc tgcttgtcga
     5521 ggcagtaaag gtttccgtca gccgaaccga aataaacgtg ctgctcgtct accgacggct
     5581 gacccggcca actcgacccg ccccacggat ccttgtgcag ccgtccgctt atggccttcg
     5641 tttcaaactc ccaaactatt tcgagcggtg cgtcagacca cggtccggtg ccgtagaaat
     5701 tgcgcgactc gttcccgagc cacgccggaa ctgaggtcgg aattttcggc ggcggtggcg
     5761 gctgcggctt ggcttccgtg cccgtgatga ctttcccgcc gcaggcagag agaaagcaac
     5821 acgccgcgag gaggacaaca atgggaagag ttttgaacac gagattcagg ccaaccaatc
     5881 gcctgtatag actaattcag ccgttcccgt gatcacaact tcgccgtcgg gacgccagtg
     5941 aattctgact tcgccgcctt ccatcacgac ccgcacgtcg cgatcggttt tctcgttgat
     6001 catcgcggcg accgcgcccg cgcacgaaca cgtgccggaa gcggttgttt cgccgacgcc
     6061 gcgctcccaa atgcgcagct cgatcagatt tctctcacgc acgcgaacga acacgacgtt
     6121 tgtgcgatcg ggaaactgcg ggtgggtttc gataattttg ccgatgcggc gccagttcaa
     6181 cgcgtcgaag tcgtcaacaa agatgcagca gtttgggttt cccatctgca tcgccgtgat
     6241 cacaaccggt tcgccttcga cgggcagcac gtaaccgatc acctggtcca gcggcggcga
     6301 gatcgacatc gggatcgaac gcgaatcgaa tttcgggtgg ccgagttcgg attcaaacag
     6361 gtacttgcca agtgcgactt gtccgcgcgg gaagtagcgc ttcaacccgg tcttggtgct
     6421 gaggcgtagc tcgtctttcg accagtggcc ggcgtggtaa agatacgcga cggcgcaacg
     6481 tgtgccgttg ccggaaagtc cggcttcgct gccgtccgga ttgaagatgc ggcaattgaa
     6541 atccgcgtcc tcagtttccg atttggagat gatggcgatg ccgtcgccgc ccgcgccgta
     6601 atgacgattg cagatgcggc gcgcgaa
//
LOCUS       DASWTX010000369         1965 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_27782, whole genome shotgun sequence.
ACCESSION   DASWTX010000369 DASWTX010000000
VERSION     DASWTX010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1965
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27782"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..944
                     /locus_tag="VGD38_05745"
     CDS             <1..944
                     /locus_tag="VGD38_05745"
                     /inference="COORDINATES: protein motif:HMM:NF012485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type II and III secretion system protein"
                     /protein_id="HEY0727555.1"
                     /translation="GGDNGGGGGGGGGGGGNSNAVKTGPNPFGVFGGLDGTNQPLPSL
                     AAAAANTVIGLTTGLLGTAQLTALISLAESRGQAKTVATPRVTALNNRPAQIESGSQI
                     PVQTTQAASGTAVVTTTFVSVPLRLSITPQITDAGTVVLRVTIENNTINTGIAVGGVP
                     GIDTQRMQSEVLVPDGGTTVMGGVLSDNEGEVQQRTPGLASIPIVGNLFKRKLTTRQN
                     SEILFFITPHIYRPDYQGRPTAGTVGDGKQRTITIPQPVPLGNPPSNTPTPTQLQQQP
                     QPQTTPTTQPQLLSAPTANSPAGSNAARPGTLSGQRP"
     gene            969..1322
                     /locus_tag="VGD38_05750"
     CDS             969..1322
                     /locus_tag="VGD38_05750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="roadblock/LC7 domain-containing protein"
                     /protein_id="HEY0727556.1"
                     /translation="MLESIIERTEGSLGALIMGTDGIAVEKVLGEAGAELNLDVAAAE
                     FTSLVRSAQRAGTDTGLGALRELVVSLEGAVMLMRLLSKDYFVVLALNSEGNLGRGRF
                     ELRKAELKLAKEFAV"
     gene            1422..>1965
                     /locus_tag="VGD38_05755"
     CDS             1422..>1965
                     /locus_tag="VGD38_05755"
                     /inference="COORDINATES: protein motif:HMM:NF012774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HEY0727557.1"
                     /translation="MKRRALWGVLLVALFCSSVEAATLFGRVIEVNDGDVITVFNLNR
                     PVRVKLMGVDAPEANQAFGDVAKKHLSALVYDKSVLVEYWGIAADGSLVGRVTLDKAD
                     IGAQMIRDGAAWFDASNQGRLSVDDREVYQQSEQAARSERRGLWQAPDPIAPWEFVKA
                     QALRKNPAASLNTILPPASAK"
BASE COUNT          401 a          543 c          618 g          403 t
ORIGIN      
        1 ctggcggtga caacggtggc ggtggtggtg gcggcggtgg tggtggtggc aattccaacg
       61 cggtgaaaac tggtccaaat ccgtttggcg tgttcggtgg cctggacggc accaatcaac
      121 cgcttccttc gctcgcggca gccgcggcga acaccgtgat cggtttgacg accggattgc
      181 tcggaactgc tcagctcacc gcgctgattt cacttgctga atcacgcggc caggcgaaaa
      241 cagtcgcgac tccacgcgtc acagcgctaa acaatcgtcc ggcacagatc gaaagtggtt
      301 cgcagattcc tgtgcaaaca acccaggccg cgagtggcac agcggtcgtg acaacaacgt
      361 tcgtttcggt tccgctgcgt ctctccatta cgccgcagat caccgacgcg ggcacggtag
      421 ttttgcgcgt cacgattgaa aacaacacca tcaacaccgg tatcgccgtc ggcggcgttc
      481 cgggtatcga cacgcagcgc atgcagtcgg aagtgctggt tccggatggc ggcacgaccg
      541 tcatgggcgg cgtgctctcg gacaacgaag gtgaagttca gcaacgcact cccggactcg
      601 cttcgattcc gatcgttggc aacctcttca aacgcaagct gacgacgcgt cagaacagtg
      661 aaatcctttt ctttatcacg ccgcacatct accgtccgga ctatcaggga cgtccaacgg
      721 caggcaccgt cggcgatggc aagcaacgga cgatcacgat tcctcagccg gttccactcg
      781 gaaacccgcc gagcaacacg ccgacgccga ctcagttgca acagcaaccg cagcctcaaa
      841 cgacaccaac aactcagccg caattgctga gtgctcccac cgccaacagt cctgccggct
      901 cgaatgcagc acggcccggc acgctgagcg gccaacgtcc gtaattggag gccacaatgt
      961 tcaaggagat gcttgagtcc attatcgaac gcaccgaggg cagcctcggt gcgctcataa
     1021 tgggaacaga tggaatcgcg gtcgaaaaag tcctcggcga ggccggcgcg gaattgaacc
     1081 tcgacgtcgc ggccgcggag tttacgtcgc tcgtgcgcag tgcgcagcga gcaggcacag
     1141 acacgggact gggcgctttg cgcgagctgg ttgtgtcgct cgagggcgcc gtgatgctga
     1201 tgcggctgtt gagtaaggat tactttgtcg tgttggcgtt gaactcggaa ggaaatttgg
     1261 gccgcgggcg attcgagttg cggaaggccg agttgaaact ggcgaaagag tttgctgttt
     1321 aggattaagt cccgcttcag tgtagagacg caaaggaacg gtttcgtttt ctttgcgtct
     1381 ttgcgtcttt gcggggaagt catttcggga ggtttcggac catgaaacgt cgtgctcttt
     1441 ggggtgttct tctcgtcgcg cttttttgtt ccagcgtgga ggcagcaacg ctgtttggac
     1501 gcgttattga agtcaacgat ggcgacgtca tcaccgtctt caatctgaat cggccggtgc
     1561 gcgtcaaact catgggcgtg gatgcgccgg aagctaatca ggcttttggc gacgtcgcga
     1621 agaaacatct ttccgcgctc gtttacgaca agtcggtctt ggttgagtac tggggcattg
     1681 ccgcggatgg cagtctggtc ggacgcgtta cgctcgacaa agcggatatc ggcgcgcaga
     1741 tgattcgcga tggcgcggcg tggttcgatg cgagtaatca ggggcgtttg agtgttgacg
     1801 accgtgaggt ttatcagcag tcggagcagg ccgcgcgaag tgaacggcgc ggcttgtggc
     1861 aagcaccgga tccgatcgcg ccgtgggagt ttgtgaaagc gcaggcactg cgaaagaatc
     1921 cggcggcgag tttgaacacg attcttccgc ccgcgagtgc caagc
//
LOCUS       DASWTX010000370         2183 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_27793, whole genome shotgun sequence.
ACCESSION   DASWTX010000370 DASWTX010000000
VERSION     DASWTX010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2183
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27793"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..660
                     /locus_tag="VGD38_05760"
     CDS             <1..660
                     /locus_tag="VGD38_05760"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEY0727558.1"
                     /translation="TAKRQTRITVGGDAIVQAQPDTAILTVAVVTQGKRAIDAQQENA
                     TKTEAVVRALKTAAGTGAEVKTSGYSLQPMRVYRENQPPTITGYEARNTVTLTTSELT
                     KLGAIIDAAGQAGANDISGISFTLRQDRPARDRALQEATQEALEKARVMARAIGGRVV
                     MIAEIQEEGFQRPPQPVYQAEAFMVKRDASTPIEIGSLDVTSRVQLVAIVEMDTVRTS
                     F"
     gene            712..1539
                     /locus_tag="VGD38_05765"
     CDS             712..1539
                     /locus_tag="VGD38_05765"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEY0727559.1"
                     /translation="MARYRNEMDDDREYYPREERLRRENLGPYDEPFSRRPQFDNERR
                     WENEGRSDYGRGRFGERANYENDEPRYRDDRRRSTLDEIRGDLGMGRDRQRYNAERSR
                     LRCRDIMTKDLAVAMRQTPVTQVALMMKQEDTGVIPVVEYDTMGNGRTNEVDRDRDDR
                     NDNRSYSRGTLVGLITDRDIVVRSVAEGKESTTTRAEDIMSVDIHTVRPNDRVVDVIR
                     MMSDKQVRRIPVVNENNYLVGMISMADVATEIEDDRELGEALEEISKNTSFWNRVFG"
     gene            1606..1971
                     /locus_tag="VGD38_05770"
     CDS             1606..1971
                     /locus_tag="VGD38_05770"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEY0727560.1"
                     /translation="MRNEDRDFSLLRRAQRVVPSGRLWNPAADVYRCEEGWVVKIDLA
                     GICSDELEIEIRDSVLRISGCRKDTVIRDGFIYQQMEITYSRFEKTIEFPARIEGASL
                     KHDYRDGFLIINLQRGEDA"
     gene            1977..>2183
                     /locus_tag="VGD38_05775"
     CDS             1977..>2183
                     /locus_tag="VGD38_05775"
                     /inference="COORDINATES: protein motif:HMM:NF014269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HEY0727561.1"
                     /translation="MAEADGNQPVQNPPFEIPVLALQNLTVFPETVVPLGVGRPRSMA
                     AVETALSTPEKLMGCITVRPDSADD"
BASE COUNT          547 a          612 c          622 g          402 t
ORIGIN      
        1 actgcaaaac gccagacgcg catcaccgtc ggcggcgacg caattgttca agcccaaccc
       61 gacacagcga tcttaactgt cgccgtcgtc actcagggca aacgcgccat cgacgcgcaa
      121 caggaaaacg caaccaaaac cgaagccgtc gtgcgcgcgc tgaaaaccgc cgcgggaaca
      181 ggcgccgaag tgaaaacgag cggttacagc ctgcaaccga tgcgcgttta ccgagagaac
      241 caacctccga cgatcacggg ttacgaagca cgcaacacag tcaccctgac gacgagtgaa
      301 ctaacaaaac tcggcgccat tatcgacgct gccggacaag ctggagccaa cgacatcagc
      361 ggcatctcgt ttacgctgcg gcaggatcgg cccgctcgcg accgcgcgct gcaggaagca
      421 acacaggaag cgctggaaaa ggcgagagtg atggcccggg caatcggcgg ccgcgtggtc
      481 atgattgctg aaattcagga agaaggtttt caacgacccc cgcagccggt ttaccaggcc
      541 gaagcattca tggtgaagcg cgacgcctcg acacccatcg agatcggctc gctcgacgtg
      601 acttcgcgcg tgcaactggt tgccattgtg gagatggaca ccgtgaggac gagtttttaa
      661 aaaccccctt gcccccgagc acttattact aatggttaag gagggaagcc aatggccagg
      721 taccgaaatg aaatggatga cgacagggaa tattacccgc gtgaagaacg tttgagacgc
      781 gaaaatttag gcccatacga cgaaccgttt agccgccgcc cgcaatttga taatgaaagg
      841 cgttgggaaa atgaaggccg atccgactac ggccgtggcc gctttggcga acgcgccaac
      901 tacgaaaacg acgaaccccg ctaccgcgat gacagacggc ggagcacgtt ggacgagatc
      961 cgcggcgatc tcggaatggg acgcgatcgc cagcgctaca acgcagaacg ttcgcgcctg
     1021 cgctgccgcg acatcatgac gaaagacctc gctgtcgcaa tgcgccagac gccggtcacg
     1081 caagtcgccc tgatgatgaa acaggaagac accggtgtga ttcccgtggt cgagtacgac
     1141 acgatgggca acggccgcac gaacgaagtc gatcgcgatc gcgacgaccg caacgacaac
     1201 cggagctatt cgcgtggcac actcgtcggg ctgatcaccg atcgcgacat cgtcgtacgt
     1261 tccgtcgcgg aaggcaaaga aagcacaacc acccgcgcgg aagacatcat gtcagtcgac
     1321 attcacactg tgcgcccgaa cgatcgcgtt gtggacgtca ttcgcatgat gtctgataaa
     1381 caggtccgcc gcattccggt ggtgaacgaa aacaactatc tcgtgggcat gatttcgatg
     1441 gccgacgtcg cgaccgagat cgaagacgat cgcgaattag gcgaggcgct cgaggagatt
     1501 tccaagaaca cttccttttg gaatcgcgtg tttggttgat ccatctgaca acgtccacag
     1561 attgcactga tttacatccg tgtaatctgt ggatattctt ttgccatgcg aaacgaagat
     1621 cgtgatttct cgctgctccg gcgagcccag cgtgtggtgc cgtccgggcg gctctggaat
     1681 ccagccgcgg acgtgtatcg ttgcgaagaa ggctgggtcg tcaaaataga tctggccggc
     1741 atctgttctg atgaattgga gattgagatt cgggactccg tcctgcgtat cagcggctgc
     1801 cgcaaagata cggtaattcg tgatggtttc atttaccagc aaatggagat tacctacagc
     1861 cggtttgaaa aaacgattga gtttcccgcc cggatcgaag gggcgtcact taaacacgat
     1921 taccgcgacg gttttttgat tattaacctg caacgtggcg aagacgcgta aaaaacatgg
     1981 ctgaagctga cggaaatcaa ccagttcaaa atccaccatt cgagataccg gtgttggcgc
     2041 tgcaaaacct caccgtgttt cccgaaactg tagtgccgct cggtgtcggc cggccgcgtt
     2101 cgatggccgc ggttgaaact gcgctgtcga cacccgaaaa gttgatgggc tgtatcactg
     2161 ttcggcccga tagtgcagac gac
//
LOCUS       DASWTX010000371         3884 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_49780, whole genome shotgun sequence.
ACCESSION   DASWTX010000371 DASWTX010000000
VERSION     DASWTX010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3884)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3884)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3884
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49780"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1197
                     /locus_tag="VGD38_05780"
     CDS             <1..1197
                     /locus_tag="VGD38_05780"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY0727562.1"
                     /translation="TLVVVQLALSLVLLVGAGLVLKSFQNLMRVDPGFASDKVLSMIV
                     PVSTRKGTPEQLMEFYKQLLTEVRSLPGVNAAATANNIPFSGRAVLDGHMVEGREPPS
                     GNAPQAEIKVVSPDYFKTMGMTILQGRDFDGNEIFQPAPPAPDMGVLVAIVDQRFVRA
                     YFPDGNAIGKRVGTLGPPWARIIGVVGDVKEQSLVTESSNPHIYFPSNQGRFAWGLSR
                     DQSRLFLVVNTDKPDAVTPAIRERIRAVDPDVPVYSVSTMNENIAKRLGPIRLINFLL
                     TALSVIALLLAAIGTYGVMSVSVSSRASEFAIRQALGAEPRNVLLSVLRQALILAAIG
                     IGLGLLGSWGLTRAISSQLFGVSATDPIVFVTTSVILVAVALLASYIPARRASQTDPV
                     VVLRES"
     gene            1265..>3884
                     /gene="carB"
                     /locus_tag="VGD38_05785"
     CDS             1265..>3884
                     /gene="carB"
                     /locus_tag="VGD38_05785"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: protein motif:HMM:NF009455.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEY0727563.1"
                     /translation="MPKRTDLQKILIIGSGPIVIGQACEFDYSGTQACKALRQEGFGT
                     VLVNSNPATIMTDPETADVTYIEPLTVETLTAIIKRERPDALLPTVGGQTALNLAIEL
                     ADSSVLADHGVELIGARREAIRIAENRMLFKQAMDEAGLPMPRGGFVNCWEKAKPLVE
                     ETGYPAIIRPSFTLGGTGGGIAYNPEEFEEIVRRGLAASPIQEVLIEESILGWKEFEL
                     EVMRDLADNVVIICTIENFDPMGVHTGDSITVAPAQTLSDREYQQLRDMAIAIIRKVG
                     VETGGSNIQFAVNPENGDIRIIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDE
                     IPNDITLKTPASFEPTIDYVVAKIPKWNFEKFAEAKDELGTQMKSVGEVMAIGRTFKE
                     ALFKGLRSLESVNPLRLEDVPLNEVERKLARPNSHRFSYVTHAIEQGMPLAEIHRLSR
                     IDPWFLDQLAAVMEIQEQVEGCELEEISASTLVSFKETGLSDRRLAYLTGRTEEEARE
                     YRKSFGIAPVYKRVDTCGAEFESYTPYLYSTYESEDEAAPTDARKIMILGSGPNRIGQ
                     GIEFDYCCCHAAFALHEAGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEDVMNIVDV
                     EKPHGVIVQFGGQTPLNLALPLHRAGVPIIGTSPDSIDLAEDRERFGALLNKLGIPQP
                     ENGMAMNITEARSVATSLGYPVRVRPSYVLGGRAMAIVYDEESLDHYVHAAFGISPDR
                     PVLIDKFLEQAVEFDVDALADETACVIAGIQEHIEEAGIHSGDSSSVLPAQRIPEEHL
                     ETIRHYTRNLAKALKVVGLMNLQLAIKDDRVYVIEVNPRASRTVPFVSKATGQPLAKI
                     AARCMAGQRLNDQRGPK"
BASE COUNT          845 a         1112 c         1127 g          800 t
ORIGIN      
        1 accctggtgg tggtccaact cgcgctgtca ctggtgttgt tggttggggc gggattggtg
       61 ttgaagagtt tccagaacct gatgcgcgtc gatccgggtt tcgcttccga taaagtgctt
      121 tcgatgatcg tcccggtctc gaccagaaag ggcacgccgg agcagttgat ggagttttac
      181 aaacagctat tgactgaagt gcgctctttg ccgggagtta acgcagcggc aactgccaac
      241 aacataccgt ttagcggtag ggctgtgctg gatggccata tggtggaagg ccgcgagcca
      301 cccagcggca acgcgcccca ggcagaaata aaagtcgtca gcccggatta tttcaaaacg
      361 atgggcatga cgattctaca aggccgtgat tttgacggta acgagatatt tcaacctgca
      421 cctcccgcac cggacatggg cgtgctggtg gcaatagtcg atcagagatt cgtgcgcgct
      481 tactttccgg acggcaacgc gatcggcaag cgcgttggca ccctgggtcc cccgtgggcc
      541 aggatcatcg gcgtagtcgg cgacgtgaaa gaacaaagcc tggtgactga gtcgtctaat
      601 ccacacattt acttcccctc gaaccagggc cgctttgcct ggggtctcag tagggatcag
      661 agccggttgt tcctcgttgt aaatactgac aagccggacg ccgttacgcc ggcaattcgc
      721 gaacgaatcc gcgccgttga tcctgacgtg ccggtctact cagtcagcac catgaacgag
      781 aatatcgcca agcggttggg gccgatccgg ctcatcaatt tcctgctcac ggccttgagt
      841 gtgatcgcgt tattgctcgc ggccataggc acctatggcg tgatgtctgt ctccgtcagc
      901 agccgggcat ctgaattcgc cattcgtcag gctctcgggg cggaaccgcg taatgtgctg
      961 ttatcggtgt tgcggcaggc gttaatactc gcagccatag gcatcggcct cggcttgctg
     1021 ggttcgtggg gtcttacgcg agccatctcc agtcaattgt ttggagtcag cgccaccgat
     1081 ccgatcgttt tcgtcaccac ttctgtaatc ctggtagcgg tcgcattgct ggcctcctac
     1141 attccggcac gacgcgcatc acaaacagat ccggtagtag ttttacgaga gtcatagtta
     1201 tcaaccggcg tcgctccacc gcgacgccgt tcctaaactc actagctctt tttgccgagg
     1261 catcatgccg aagcgcaccg atctacaaaa aattctgatc atcgggtctg gtccaatcgt
     1321 catcggacaa gcctgtgagt ttgattactc cggcactcaa gcctgcaagg cgttgaggca
     1381 ggagggattc ggcacagtgc tggtcaactc caatccggcg acgatcatga ccgacccgga
     1441 gacagcggac gtcacgtaca tcgagccgct cacggtcgag acgcttaccg cgataatcaa
     1501 gcgcgagcgg cccgatgcgc ttcttcctac tgtcggcggt caaaccgcgc tgaacctcgc
     1561 gatcgagctg gcggactcat cagtgctcgc cgatcacggc gtggaattga tcggcgcgcg
     1621 gcgtgaagcg attcgcattg ccgagaatcg catgttgttc aagcaggcaa tggacgaagc
     1681 gggtttgccg atgccgcgcg gtggttttgt gaattgctgg gaaaaggcca agccactcgt
     1741 ggaagaaacc ggatacccgg cgatcattcg cccgtcgttc acactcggcg gcaccggcgg
     1801 cggcattgcc tacaacccgg aagagtttga agaaatcgta cggcgcggtt tagcagcgtc
     1861 tcccattcag gaagtgttga ttgaagagtc gatcctgggg tggaaagagt tcgagctcga
     1921 agtgatgcgc gatctggccg acaacgtcgt gatcatctgc acgatcgaga atttcgatcc
     1981 gatgggtgtt cacaccggcg actcgatcac agtcgcgccg gcgcagacgt tgagcgatcg
     2041 cgaataccag caactgcgcg acatggcgat cgcgatcata cgcaaggtcg gcgttgaaac
     2101 cggcggttca aatatccagt ttgcggtgaa cccggaaaac ggcgacatcc gcatcatcga
     2161 gatgaatcca cgtgtctcgc gctcgtcggc gttggcttca aaagcaaccg ggtttccgat
     2221 cgcgaagatc gccgcgaagc tggccgtcgg ttacacgctc gacgaaatcc cgaacgacat
     2281 cacgctcaag acaccagcgt cgttcgaacc gacgatcgat tacgtcgtcg caaagattcc
     2341 gaagtggaac ttcgagaagt ttgccgaagc gaaggacgag ttgggcacgc agatgaaatc
     2401 agtcggcgaa gtgatggcca ttggccggac attcaaagag gcgttgttca aaggcttgcg
     2461 ctcgctcgag tcggtgaatc cgcttcgtct cgaagacgtg ccgctgaatg aagtggaaag
     2521 aaagctggcc cggccaaact cgcaccggtt ctcgtacgtg acacacgcca tcgagcaggg
     2581 catgccgctc gcggagattc atcgcctgtc acgaatcgat ccgtggttcc tggaccaact
     2641 cgccgccgtc atggaaatac aggaacaagt cgaaggttgt gaactggaag aaatctccgc
     2701 ttcgacgctc gtgtccttca aagagaccgg cctttccgat cgccgtctcg cttatctgac
     2761 cggacgcacc gaggaagaag cacgcgaata tcgtaagagc ttcggcatcg ctccggttta
     2821 caaacgcgtc gatacctgcg gcgccgagtt tgaatcctac acaccgtatc tctattcgac
     2881 gtacgaatcg gaagatgaag cggcgcccac agacgcgcgc aagatcatga ttctcggttc
     2941 ggggcccaat cgtatcgggc agggaatcga attcgattac tgctgctgcc acgcggcgtt
     3001 cgcactgcac gaagcgggtt acgaaacgat catggtcaac tgcaatccgg aaaccgtttc
     3061 cactgactac gacacttccg atcgtctcta cttcgaaccc ctcacgttcg aagatgtgat
     3121 gaacatcgtc gacgtcgaga agccgcacgg agtcatcgtg cagtttggcg gtcaaacgcc
     3181 tcttaatctc gctttgcctt tgcaccgcgc cggcgttccg atcatcggca cgtctccaga
     3241 ttcaatcgat ctggccgagg atcgtgaacg cttcggcgcg ttactcaata aactcggtat
     3301 cccacaaccc gagaacggca tggcgatgaa catcaccgaa gcgcgctcag tcgcgacgag
     3361 tctcggttac ccggtgcggg tgcggccgag ttacgtgctc ggcggacgcg cgatggccat
     3421 cgtctacgat gaagagagcc tggaccacta cgtacacgct gcgttcggca tcagtcccga
     3481 tcgtccggtg ctgatcgaca agttcctcga acaggcggtc gaattcgacg ttgacgcgct
     3541 ggcagatgaa acggcgtgtg tcatcgccgg cattcaggaa cacatcgaag aagccggcat
     3601 tcactcgggc gattcgtcgt ccgttttgcc cgcgcagcgc atcccggagg aacatctcga
     3661 aacgatcagg cattacacga gaaatctggc gaaagcgtta aaagtcgtcg gcttgatgaa
     3721 tctgcagctc gcgatcaagg acgaccgcgt ctacgtcatc gaggtcaacc cgcgcgcgtc
     3781 gcgcaccgtg ccgttcgtca gcaaggccac cggccagccg ttggccaaga tcgcggcgcg
     3841 ctgcatggcg ggtcagcggc tcaacgacca gcgcggcccg aaag
//
LOCUS       DASWTX010000372         1885 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_114229, whole genome shotgun sequence.
ACCESSION   DASWTX010000372 DASWTX010000000
VERSION     DASWTX010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1885
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114229"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..723
                     /locus_tag="VGD38_05790"
     CDS             <1..723
                     /locus_tag="VGD38_05790"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEY0727564.1"
                     /translation="QIVFAPNLGWRDFDLKTPLEQATGLPVELENAANSCALSEICFG
                     RRAEGLRNLVIVTVSEGIGCGLILNHQLVQGSTGTAGEFGHAALIPDGLECSCGNRGC
                     WEMYASNSAAVRYYTQASAPSRGRQSATAEKTISFDHLLQLAGQGDSKAVEALQQMAT
                     YLGLGIAPLVSGLAPDMIVVVGEVTRAWHKVGPIIKDTIRRHSFTRAETQIVPSDPIT
                     QPRLRGTIALVLLKHFGAPAVA"
     gene            959..>1885
                     /locus_tag="VGD38_05795"
     CDS             959..>1885
                     /locus_tag="VGD38_05795"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0727565.1"
                     /translation="MFVLAPDARAQVLYGSLVGNVTDPNGAAVSDAKVEVTNVTTGVV
                     SSVMTDDRGVYALHDLQVGIYKVAISRSSFKTTIKEGVRIDANKTYRFDAEMEIGGLE
                     ETVLVAAGLDATLQTDRGDLNTTQTARQINNLPLFGSVGRNYQSMIQLIPGTTRGTGS
                     FFLNANGNGEDNSAAGNPQRSISYNVNGVSRLQNNTKIDGASIIYPWLPTNTVYVPPA
                     EAIQEVNIVTNAFDAEQGLAGGAAINVSIKSGGNDFHGTGWGYTTNSRFRSRRFFQAT
                     NQVNNPKDILAQFGYAFSGPIILPRFGEGGPSI"
BASE COUNT          422 a          571 c          535 g          357 t
ORIGIN      
        1 cagatcgtct ttgcgccaaa cctcggctgg cgagacttcg atctgaaaac accgctggaa
       61 caggccaccg gactgcccgt agagctggaa aatgctgcaa attcctgcgc cctttccgag
      121 atctgtttcg gccgccgagc tgagggcctg cggaatttag tcatagtcac cgtctcggaa
      181 ggtatcggct gcggcctgat actcaatcat caactggtcc agggatcgac tggtaccgcc
      241 ggtgagtttg gccacgccgc tttgatcccc gacggactcg agtgcagttg cggcaatcgc
      301 ggttgttggg agatgtatgc ctccaactcc gccgccgtgc gctactacac gcaggccagc
      361 gcgccgagcc gcggccgcca gtctgcaact gcggaaaaga cgatcagttt cgatcacctg
      421 ttgcagctag ccgggcaagg cgacagcaaa gcagtcgagg ctttgcaaca gatggccacg
      481 tatctgggtt tagggatcgc gccgttggtc tcgggtctgg cgccggacat gatcgtcgtc
      541 gtcggggaag tcactcgtgc ctggcacaag gttgggccaa tcatcaagga caccatccgc
      601 cggcattcgt ttacgcgcgc ggaaacccag atcgtaccga gtgatcccat aacgcagccg
      661 cgcttacgcg gcacgatcgc cctcgtattg ttgaaacact tcggcgcccc ggctgtagcc
      721 tgagcgccct tctagtctct attttgttgt ggtcgcgaac taaaacgggc agagctccgg
      781 ttttatggag cgcatgcaaa cgccagccta agaggagaga gccatgttca acttcacaac
      841 ctgtcctgag cacacacaag gtaacgcaca ttcacccgcg caaacgggtg ccaaaaaacc
      901 gtccccagcg cgactacgtc tgaagttatc ggctcgatac ctcgcgctgc ttgtctcgtt
      961 gttcgtcctc gcgcccgacg cgcgggcaca ggtcctttac ggctctctcg tcggaaacgt
     1021 tacggatccg aacggagctg ccgtttcaga cgcgaaggtc gaagtcacaa acgtcacgac
     1081 cggagtcgta tcaagcgtta tgacggacga tcgcggcgtt tacgcattgc acgaccttca
     1141 agtgggcatc tacaaagtcg caatctcgcg atcgtcgttc aagacgacaa tcaaagaagg
     1201 cgtgcgaatc gatgcgaaca agacctatcg gttcgacgcc gaaatggaga ttggcgggtt
     1261 agaggaaacg gttctagttg cggccggttt ggatgcgacg ctacagaccg atcgcggtga
     1321 cttgaacacc acgcaaacag cgcgacagat caacaacctg ccgctgttcg gcagcgtcgg
     1381 ccgcaactac caaagcatga tccaactgat cccgggcacc acccgcggca ctggaagctt
     1441 tttcctcaac gccaacggca acggcgaaga caactccgca gccggtaacc cgcagcggtc
     1501 catctcttac aacgtcaacg gcgtgtcgcg tttgcagaac aacacgaaga ttgacggcgc
     1561 cagcatcatc tatccgtggc tgccgacgaa cacggtttac gtgccgccgg cggaagcaat
     1621 tcaggaagtc aacatcgtca ccaacgcgtt cgatgccgag caggggctcg cgggcggcgc
     1681 ggcgatcaac gtcagcatca agagcggcgg aaatgacttc cacggtacgg gttggggcta
     1741 cacaaccaac agccgcttca gatcgcggcg cttcttccag gcaaccaacc aggtgaacaa
     1801 cccgaaggac atcctggcgc agttcggata cgcgttcagt ggtccaatca tcctgccgcg
     1861 ctttggcgag ggtggaccat caatc
//
LOCUS       DASWTX010000373         2699 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_114230, whole genome shotgun sequence.
ACCESSION   DASWTX010000373 DASWTX010000000
VERSION     DASWTX010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2699
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114230"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1546
                     /locus_tag="VGD38_05800"
     CDS             <1..1546
                     /locus_tag="VGD38_05800"
                     /inference="COORDINATES: protein motif:HMM:NF015177.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727566.1"
                     /translation="LAGLLWSKQFYHYVVEQWLDGDPATPKPPAERVYGRNRDWQHLY
                     NADVISMPDKWEYPWYAAWDLAFHCVPLALVDSEFAKEQLLLMLREWYMHPNGQLPAY
                     EWAFGDVNPPVHAWAAWRVYKIEKKRRGVGDTVFLKRVFQKLLLNFTWWVNRKDADGM
                     NIFQGGFLGLDNIGVFDRSAPLPTGGHIAQSDGTSWMAMYALNLLAIALELAKEDASY
                     EDVASKFWEHFLYIAHAMNTRGDDEVRLWDDQDGFFYDVLHLPQGKPFPMKVRSMVGL
                     IPLFAVETLEPELLERLPDFKRRMEWFIGNRSDLTQNVACMRTPGNDERRLLSIVNQE
                     QLRRVLRVMLDENEFLSPYGIRAISRFHKNNPYMLQVNGMQHRVDYEPAESSTGLFGG
                     NSNWRGPIWFPLNYLLVESLQKFHRYFGEDFKVECPVGSGQMMTLWEVAAEISKRLSR
                     IFLLDANQRRPVFGPFEKFQTDPNWCDLIPFHEYFNGDNGSGIGASHQTGWTALVAKL
                     LQQSGE"
     gene            1617..2504
                     /locus_tag="VGD38_05805"
     CDS             1617..2504
                     /locus_tag="VGD38_05805"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HEY0727567.1"
                     /translation="MSATWAILLAGGDGTRLQSMTRAITGDSRPKQFVPVIGRSTLLD
                     QTRRRVALSIDPSRTLIVVTQKHRRFYEPLANEISPSLLLEQPLNKGTAPAILYALLQ
                     VAAKSPKAIVALFPSDHFFADDEEFMSHIDVAIDAVRVQPESVTLLGITPTAPETEYG
                     WIESQPSILAHAERSITRVRKFWEKPDASLASSLMQRGCLWNSFVMVGRVDALLKMTR
                     AALPELYATFTGSETLAQIYSQIEDSNFSHQVLAARPEDLMVMRVGDVGWSDLGEPNR
                     VLSTLAHIGIESQLAVTAS"
     gene            2520..>2699
                     /locus_tag="VGD38_05810"
     CDS             2520..>2699
                     /locus_tag="VGD38_05810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727568.1"
                     /translation="MKAIAVKPGVPNTVHLTELPAPKVGDVANGRGVLVRVLRVGVDG
                     TDKEINAAEYGQAPPG"
BASE COUNT          573 a          740 c          817 g          569 t
ORIGIN      
        1 gttggcgggg cttttgtggt ccaagcagtt ctatcactac gtcgtcgagc agtggcttga
       61 tggtgatccg gcgacaccca agccgccggc tgagcgcgtg tatggccgca atcgtgattg
      121 gcagcatctc tacaacgccg acgtcatttc gatgcccgac aagtgggagt atccgtggta
      181 cgccgcgtgg gatctggcgt ttcattgcgt gccgctcgcg ctcgtcgatt cggagtttgc
      241 gaaagagcag ctcctgttga tgctgcgcga atggtacatg catccgaacg gtcaactgcc
      301 cgcgtacgaa tgggccttcg gcgacgtgaa tccgccggtc catgcgtggg ccgcgtggcg
      361 cgtctacaag attgaaaaga agcgccgtgg agttggcgac acggtttttc tgaagcgcgt
      421 gtttcagaag ctgctgttga atttcacgtg gtgggtcaac cggaaagacg ccgatggcat
      481 gaacatcttt cagggcggct ttctcggtct ggacaacatc ggcgttttcg atcgcagcgc
      541 gccgttgccg accggcggac acatcgcgca atccgacggc acaagctgga tggcgatgta
      601 cgcgctgaat cttctcgcga tcgctttgga gctcgcgaaa gaggacgcgt catacgaaga
      661 cgtcgccagc aaattctggg agcactttct ctacatcgcg cacgcgatga acacgcgcgg
      721 cgacgatgag gtccgactgt gggacgacca ggacggattc ttctacgacg tgctgcattt
      781 gccgcagggc aaaccgtttc cgatgaaggt ccgttcgatg gtgggtttga tcccgctgtt
      841 tgccgtcgag acgttggaac cggagctgct cgagcgcttg cccgacttca aacggcgtat
      901 ggaatggttt atcggcaatc gttccgatct gacgcagaac gttgcgtgca tgcgcacgcc
      961 gggaaacgac gagcggcgat tgctgtcgat cgtgaaccag gaacagttgc ggcgcgtctt
     1021 gcgcgtcatg ctcgacgaga atgagttcct ttcgccgtac ggcatacgcg cgatctcgcg
     1081 gtttcacaaa aacaatccat acatgcttca ggtcaacggc atgcagcatc gcgtggacta
     1141 cgaaccggcc gagtcgagca ccggtttgtt cggcggcaat tcaaactggc gtgggccaat
     1201 ctggtttccg ctcaactacc tgctcgtcga gtcgttgcag aagtttcatc gctacttcgg
     1261 cgaagacttc aaagtcgaat gtccggttgg ttccggtcaa atgatgacgc tgtgggaagt
     1321 ggccgccgag atctcgaaac gtctttcgcg gatcttcctg ctggacgcga atcaacgccg
     1381 tccggtgttc gggccgtttg agaagtttca gaccgatccc aactggtgcg atctcattcc
     1441 gtttcacgag tacttcaacg gcgacaacgg ctcgggcatc ggcgcgagtc atcagactgg
     1501 ttggaccgca ctggtcgcga agctgctgca acaaagcggc gaataacctg taaggaatct
     1561 gctcctggac cgactcatga ttgtttggcg aactcaaaca gaaggattca accaacatga
     1621 gcgcaacttg ggcaatttta ttagcaggag gagatgggac gcgtttgcag tcgatgacac
     1681 gcgcgattac gggcgacagc cgtcccaaac agttcgtgcc cgtcatcgga cgcagcacgc
     1741 ttctcgatca gacgagacgg cgtgttgcgt tgtcaatcga tcccagccgc acgttgatcg
     1801 tcgtgacgca gaagcatcgc cggttttatg agccactggc gaacgaaatc tccccgagtc
     1861 ttctactcga acaaccactc aacaaaggaa cagcgccggc gattctttac gcgctgttac
     1921 aggtcgcggc gaagtcgccg aaagcgatcg tcgcgctgtt tccgtcggac cacttcttcg
     1981 ccgatgacga agagttcatg tctcacatcg acgtcgcgat cgacgcggtg cgagtgcagc
     2041 ctgagtcggt gacgctgctg ggaattacgc caaccgcgcc ggaaacggaa tacggctgga
     2101 tcgagtcgca gccgtcgata ctcgcgcacg cggagcgatc gatcacgcgc gtcaggaagt
     2161 tttgggaaaa gccggatgcg agtttggcga gttcgctgat gcaacgcggc tgcttgtgga
     2221 acagcttcgt gatggttgga cgtgtggatg cgctactgaa gatgacacgc gctgctttgc
     2281 cggagctgta tgcaactttt actggatccg agactctcgc acagatctat tcgcaaatcg
     2341 aagattcaaa cttttcgcat caggtgctcg cagcccggcc tgaagatctg atggtgatgc
     2401 gagtcggaga cgtcggctgg agcgatctcg gcgagcctaa ccgggttttg tcgacgctcg
     2461 cccacatcgg aatcgaatca caacttgcag tcaccgcaag ctaataaaaa ggaatcatga
     2521 tgaaagcaat cgcagtcaaa ccaggagtac cgaacacagt ccacctaacc gaactgccgg
     2581 cgccgaaagt cggcgacgtc gcgaatggac gcggcgtgct ggtgcgcgtg ttgcgcgtcg
     2641 gcgtcgatgg cacggacaaa gagatcaacg ccgccgagta cggccaggcg cctccggga
//
LOCUS       DASWTX010000374         1504 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_374556, whole genome shotgun sequence.
ACCESSION   DASWTX010000374 DASWTX010000000
VERSION     DASWTX010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1504
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_374556"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1498
                     /locus_tag="VGD38_05815"
     CDS             <1..1498
                     /locus_tag="VGD38_05815"
                     /inference="COORDINATES: protein motif:HMM:NF025314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4214 domain-containing protein"
                     /protein_id="HEY0727569.1"
                     /translation="DRIKITTLDGGPFAPGKTIKIDVTVWAFSVTNDFLDLFYTSDVN
                     NPNWTLITTLIPSGTGSQVLSATFTIPNSGGVHAIRANFLLQGAPVPCSGGPNNFDDH
                     DDLAFAVQQPSGPSWQPTILTANQVELKSWKVDGRTFVYAKLTFPDAGYRVANWGSLS
                     QAGNAFASDATIEKFTGGSAQVITSNAQIWDLGALAVGTYSFTFKNSGTTVKTLNITV
                     SSTPPAPNPIDDAREFVFWQYKDFLRRDPDGPGWDHWTAEITQCTNIAFRRPGESEAQ
                     CVERKRENTSAAFFVSPESQNIAYFVLRVYRGSLGRMPFFGGGNGPSDEFTRDAATVG
                     AGIVVNNALDHNVINANKQAFVNAFVLRSDFKAIYDPLTNTQYVDRLFQTTGVTPSAG
                     DREALINGLNGGETRASVLFKVVDGTTTGAGGLLTFNTTYGKAFYDNLFNAAFVQMEY
                     FGYLQRDPDPGGYAFWLGKLNTFGDWVNAEMVKSFIKAPEYRARFGAP"
BASE COUNT          305 a          399 c          466 g          334 t
ORIGIN      
        1 cgaccggatc aagatcacaa ctcttgatgg aggtcctttt gcgcccggta agacgatcaa
       61 aatcgacgtt accgtttggg cgttttcggt aacgaacgat ttcctcgatc tgttttatac
      121 gtcggatgtg aacaatccga attggacttt gatcacaacg cttatccctt caggcactgg
      181 atcacaggtc ctctcagcca ccttcacgat tccgaacagc ggcggagtac acgctatacg
      241 tgcgaatttc ctcttgcagg gagcaccggt gccttgtagt ggaggtccca acaacttcga
      301 cgatcacgat gatctggcat ttgccgtgca acaaccttcc ggcccttcat ggcagccgac
      361 gatcctgacg gctaatcaag tcgagttgaa gagctggaag gttgatgggc gcacgtttgt
      421 ttacgcgaag ctgacgttcc cggatgcggg ttatcgtgtg gccaattggg gtagcttgtc
      481 ccaggccggc aacgctttcg cgtcggatgc gacgattgag aagttcaccg gcggctcggc
      541 gcaggtgatc acaagcaacg cgcagatttg ggacctcggt gcactcgcgg tgggaactta
      601 ttcgtttacg ttcaagaact cgggaacgac tgtgaagacg ttgaacatca ccgtgagttc
      661 gactccgccg gcgccgaatc cgatcgacga cgcgcgggag ttcgtgttct ggcaatacaa
      721 agatttcctg cgacgcgatc cggacgggcc gggctgggat cactggacgg ctgagatcac
      781 gcagtgtacg aacattgcgt tccggcgtcc gggtgagagt gaagcgcagt gtgtggagcg
      841 caagcgcgag aatacgagtg cggcattctt tgtttcgccg gagtcgcaga acatcgcgta
      901 cttcgtgttg cgtgtgtatc gcgggtcgtt gggccgcatg ccgttctttg gtggcggcaa
      961 tgggccgagt gacgagttca cgcgtgacgc ggcgacggtt ggggcgggca ttgtcgtgaa
     1021 caacgcgctc gatcacaacg tgatcaatgc gaacaagcag gcgtttgtaa atgcctttgt
     1081 tttaaggtca gacttcaaag cgatctacga tcctttgacg aacacgcagt acgtcgatcg
     1141 cctgttccag acgactggcg tgacgccctc cgccggcgat cgggaggcgc tgatcaatgg
     1201 cctgaacggc ggcgagacgc gggcgagtgt gctcttcaag gtcgtggatg gaacgacgac
     1261 cggcgcgggc ggcttgctca ctttcaacac cacttacggg aaggcgttct acgacaacct
     1321 gtttaatgcg gcgtttgtgc agatggagta cttcggctat ctgcaacgcg accccgatcc
     1381 gggcggctat gccttctggc tcggcaagct gaacaccttc ggcgactggg tcaacgcgga
     1441 gatggtgaag tcgttcatca aggcgcctga gtatcgcgcc cgcttcggtg cgccctgagg
     1501 gcaa
//
LOCUS       DASWTX010000375         3404 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_91165, whole genome shotgun sequence.
ACCESSION   DASWTX010000375 DASWTX010000000
VERSION     DASWTX010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3404)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3404
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91165"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..968)
                     /locus_tag="VGD38_05820"
     CDS             complement(<1..968)
                     /locus_tag="VGD38_05820"
                     /inference="COORDINATES: protein motif:HMM:NF024900.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEY0727570.1"
                     /translation="MATELAKVTINGKLFEVPKGARLIDVCREKGFDIPSFCYYADLA
                     LQASCRMCLVRIEKMPKLQTSCTITVTDGMVVTTQSEEIEKAQRGMNEFLLANHPLDC
                     PVCDRGGECELQEMTFDWGGLEERFTEQKNYYAERYLSPMVANDPQRCILCKRCTRVC
                     DEWMGEEAIEAGGRGAHTVIGTYLGWLDCSQCGNCIEVCPTGTLLDGTYRHQTRPWEL
                     AQTISTCNFCSDGCQMSLGSRSGEVRRVVARDRYVNGINGEFLCVKGRFGHPFINHED
                     RIRTPMIRYKKGGKLIPATWDEAIRHVATRLDEIADKHGRDSIGIVG"
     gene            complement(949..2244)
                     /gene="nuoF"
                     /locus_tag="VGD38_05825"
     CDS             complement(949..2244)
                     /gene="nuoF"
                     /locus_tag="VGD38_05825"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018052520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HEY0727571.1"
                     /translation="MRIEAIGCEPLQLRRVHLENSRSIDVYRANGGYEALRKVLDGMS
                     PDDVINEVKKSALRGRGGAGFPTGMKWSFVPKDSPKPKYVVCNADESEPGTFKDRYLM
                     ERDPHMLIEGMLISAYALNAKTNYIYTRGEYRYLIDIMDVALEEARAAGLLGNNILGA
                     NFSCEIYTHTGAGAYICGEETALLSSLEGLRGHPRMKPPFPAVSGLYACPTVVNNVET
                     LTAVPDIIKMGGEAYQKLGTEKSGGTKLWSVSGHVNQPGVYELPMGYDDMEKFIMEDC
                     GGIIGGKQLKAVIPGGSSVYIMRADQIVGKDVRMDYEGLVAAGSSVGSGGFIVMDETV
                     DVFESTKNLTEFYKHESCGWCTPCREGTDWLVKVFKRIDQGGGRPEDAQLMLDLCDNI
                     EGKSFCPLGDAASWPIQSAIKRFPEDFLRRLTRNGDRVS"
     gene            complement(2256..2786)
                     /gene="nuoE"
                     /locus_tag="VGD38_05830"
     CDS             complement(2256..2786)
                     /gene="nuoE"
                     /locus_tag="VGD38_05830"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF005722.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HEY0727572.1"
                     /translation="MSSQLIKIGPLSQPVSLGVEPATFSPEVEAEIDRHLAKYPVMRS
                     AILPLMFIVQRERGYLDPPGVLYLANRLKVRVTDIWEVATFYSMINTKPVGKYHIQVC
                     KTLSCKIMGAGKVTEHCSNKLGIKVGETTPDGRFTLSEVECLGSCGTAPMFQINFDYH
                     ENLTPEKIDQVLDALP"
     gene            complement(2868..>3404)
                     /locus_tag="VGD38_05835"
     CDS             complement(2868..>3404)
                     /locus_tag="VGD38_05835"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF012566.4"
                     /note="Catalyzes the transfer of electrons from NADH to
                     quinone; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HEY0727573.1"
                     /translation="WGLSGPCLRGSGVNLDIRRANPYCGYENYDFEVPTEPDGDVWAR
                     YMVRMREMRESHKIATQALSRLRPGSVKADAPKVVLPDREAMKSHMDALIHHFLIVAE
                     GFDVPAGEVYHPIEASKGELGVYMRSDGGPKPSRVHFRGPSFINLSALPVMSEGEMVA
                     DVVAIIGSLDIVLGEIDR"
BASE COUNT          689 a         1060 c          898 g          757 t
ORIGIN      
        1 ccgacaatgc cgatcgaatc tcggccatgc ttgtctgcaa tctcgtcaag acgcgtcgcc
       61 acgtgccgga tcgcttcatc ccacgtcgcg ggaatcagct tgccgccttt cttgtaacgg
      121 atcatcggcg tgcgaatacg gtcttcgtgg ttgatgaacg gatgtccgaa gcgtcccttc
      181 acacaaagaa actcgccgtt gatcccgttc acgtaacgat cgcgcgccac gacgcggcgc
      241 acttcaccgc tgcgcgaacc gagcgacatc tggcagccgt ccgaacagaa attacacgtc
      301 gaaattgttt gcgcgagctc ccacgggcgt gtctggtgac gataagttcc gtcgagcaac
      361 gtgcccgtcg gacaaacctc gatgcagttg ccgcactgcg aacagtcgag ccagccgaga
      421 taggtgccga tcaccgtgtg cgcgccgcgc ccgcccgctt cgatcgcctc ttcgcccatc
      481 cactcgtcac aaacgcgcgt gcagcgtttg cagagaatgc agcgttgcgg atcgttcgcc
      541 accatcggcg agagataacg ctcagcgtag tagttctttt gttcggtgaa gcgttcctcg
      601 agaccgcccc agtcaaacgt catctcctgc aactcacact cgccgccgcg atcgcacacg
      661 ggacaatcga gcgggtgatt cgcgagcaga aactcgttca tcccgcgctg cgccttttcg
      721 atctcttcgc tttgcgtggt gacgaccatg ccgtcggtga cggtaatcgt gcaggacgtt
      781 tgcagcttcg gcatcttctc gatgcgcacg aggcacatgc gacacgacgc ctgcaacgcg
      841 aggtctgcgt aataacagaa cgatgggatg tcgaaaccct tctcgcggca gacgtcgatc
      901 agacgtgcgc ccttcgggac ttcaaacaac ttcccgttga tagtgacttt agctaactcg
      961 gtcgccattt ctcgttaatc tgcggaggaa atcctctgga aaccttttga tcgccgactg
     1021 gatgggccac gatgccgcat cgccgagcgg gcaaaacgat ttgccctcga tgttgtcgca
     1081 aagatcgagc atcagttgcg cgtcttccgg ccgcccgccg ccttgatcga tccgtttgaa
     1141 aactttcacc agccagtcag tgccttcgcg gcacggcgta caccagccgc acgattcatg
     1201 tttataaaac tcggtcaggt tcttcgttga ctcgaacacg tcgaccgtct catccatcac
     1261 gatgaaaccg ccggagccga cactcgaacc cgccgccacc aaaccttcgt aatccatgcg
     1321 cacgtctttg ccgacgatct gatcggcgcg catgatgtag accgaagaac cacccggaat
     1381 cacggctttc aattgcttgc cgccgataat cccgccgcag tcttccatga tgaacttctc
     1441 catgtcgtcg taacccatcg gcagttcgta aacgccgggc tgattgacat ggccggagac
     1501 ggaccacagc ttcgtgccgc cgctcttttc cgttccgagt ttttgataag cctcgccgcc
     1561 catcttgatg atgtcgggca cggccgtcag cgtctcgacg ttattgacga ctgtcggaca
     1621 cgcgtacaaa ccggagacgg cagggaaggg cggcttcata cgcgggtggc cgcgcagtcc
     1681 ttcgagcgag ctcagcagtg cggtctcttc gccgcagatg taagcgccgg cgccggtgtg
     1741 cgtgtagatc tcgcaggaga agttggcgcc gagaatgttg ttgccgagca gtcccgccgc
     1801 tcttgcttct tccaacgcca cgtccatgat gtcgatcagg tatcgatact cgccgcgcgt
     1861 gtagatgtaa ttcgttttcg cgttcagcgc gtatgccgag atcaacatgc cttcgatcag
     1921 catgtgcgga tcgcgttcca tcaggtagcg atctttgaac gtgccgggtt cggattcgtc
     1981 ggcgttgcag acgacgtact tcggtttggg tgaatccttc ggcacgaagc tccacttcat
     2041 gccggttgga aaacccgcgc cgccgcgtcc gcgcaacgcg gacttcttca cttcgttgat
     2101 cacgtcgtcc ggcgacatgc cgtcgaggac ttttcgcagc gcttcgtagc ctccattggc
     2161 ccgatagaca tcgatggacc gcgagttctc gagatgaact cgccggagtt gcagtggttc
     2221 acagccgatt gcttcgatac gcatgaaaaa ttcttttacg gtaaagcgtc cagtacctgg
     2281 tcgatctttt cgggcgtcag gttctcgtgg tagtcgaaat tgatctgaaa catcggcgcc
     2341 gtgccgcacg agccgagaca ttcgacttcc gataacgtga accgcccgtc gggtgttgtt
     2401 tcaccgactt taataccgag cttattcgag cagtgctcgg tgacttttcc cgcgcccatg
     2461 atcttgcacg agagcgtctt gcaaacctga atgtgatact tcccaaccgg cttggtgttg
     2521 atcatcgagt agaacgtcgc gacttcccag atgtcggtca cgcgcacctt caaacggttt
     2581 gcgagataca acacgcccgg cggatcgagg tagccacgct cgcgttgcac gatgaacatc
     2641 agcggcagaa tcgccgaacg catcaccgga tacttcgcca gatggcgatc aatttccgcc
     2701 tcaacctctg gagagaatgt cgccggctca acacccagcg agacaggctg cgacagcggt
     2761 ccaatcttta tcagttgcga actcattact tgcttgcgct tatcagtgtt tcagttcttt
     2821 gtctttaaat tcttttccct ctggcctaac gccagcggtc tcttcgctta ccggtcgatt
     2881 tcaccgagga cgatgtcgag cgacccgatg atcgccacaa catccgcgac catttcacct
     2941 tcagacatca ccggcagcgc cgacaagtta ataaaactcg gtccgcggaa gtgaacccgg
     3001 ctcggctttg gcccaccatc cgatctcata taaacaccca actcgccctt cgacgcctca
     3061 atcgggtgat aaacctcgcc cgccggcacg tcaaaccctt ccgcaacgat caaaaagtga
     3121 tgaatcaacg cgtccatgtg gctcttcatc gcttcccgat cgggcaacac gaccttcggc
     3181 gcgtctgctt ttaccgatcc gggccgcaaa cgcgagagcg cctgcgtggc gatcttgtgc
     3241 gactccctca tctcgcgcat gcgcaccatg tagcgtgccc aaacgtctcc gtcaggttcg
     3301 gttggcactt cgaaatcgta attctcgtaa ccgcagtaag ggttagcgcg acggatgtcg
     3361 aggttcacgc cgctgccacg cagacatggg ccggagagtc ccca
//
LOCUS       DASWTX010000376         3840 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_27937, whole genome shotgun sequence.
ACCESSION   DASWTX010000376 DASWTX010000000
VERSION     DASWTX010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3840
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27937"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..800)
                     /locus_tag="VGD38_05840"
     CDS             complement(<1..800)
                     /locus_tag="VGD38_05840"
                     /inference="COORDINATES: protein motif:HMM:NF014896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727574.1"
                     /translation="MIQTNKYPVARKADQVDDYHGVKVADPYRWLEDLDSEETRKWVE
                     AQNNLTFAFLNAIPQRTAIRERLTKLWNFEKYGVPFKEGNRYFYTRNSGLQNQSVLYT
                     VTALDAQPQMILDPNTLSPDGTVAVSGLQVSPDGKLLAYSLSASGSDWQEWKVRDVET
                     SKDLSDHLKWVKFSGVSWSRDGKGFFYNRYDEPKADALRATNYFQKVYYHRLGTPQAE
                     DILVYERPDQKDWLFGASVTEDGNYLIVTIYQGTDVKNRVYFKDLKAK"
     gene            1042..2286
                     /locus_tag="VGD38_05845"
     CDS             1042..2286
                     /locus_tag="VGD38_05845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727575.1"
                     /translation="MKIRILFVLTLALFLFSTAPIQAQAQENNTDQTVRPRTITPPAV
                     NPNVPVPGGAPAAAAPEIQKGMSLPLTYMTPSMIQSRIGEAQRMLKTRPMATALTTPS
                     IQFVTVAALDRDTGKTHLITISKQTFLTKGAEISTITSLGTNVNVRVLRANGVNTALT
                     IFTPGGQSLVPLTVEYPIERNGLFREMAYYTSAHPALLSSDLVRSGQSYVRNMLDLAA
                     TRLRDRGVVVSPQIIDVAERLCLVEHVDHERFRSENRLALYEEVYSLFALNELDTYRF
                     AVSSAGAGGMVQMIPWAYNLVRSRHPGVGLIPDFVTGMRNHANALQAMLLYMHDTWND
                     LTANSEVQYALGAKIATPAELLAAGYNSNAAKLPGYIKRGGDNWRTLIPRETQMYLAI
                     YKSFESLVPLKTRAGAPAAAAK"
     gene            complement(2279..>3840)
                     /locus_tag="VGD38_05850"
     CDS             complement(2279..>3840)
                     /locus_tag="VGD38_05850"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0727576.1"
                     /translation="FGTQLLRLVFSYFQVILLNSVGQYVMFDMRKELYDKLQHQEVAY
                     YDRNPVGRIMTRLTSDVDALNELFTAGVTDLLGDLVMILAIISVMLWMDVRLTLVTLL
                     TVPLLFAATTWFRRGARRGYDLVRTRIARINAFLQEHFAGAQTVQIFNAETKSLNTFD
                     NINDEYRRANIDTIFYYAVFFPLVDLIGAVGIALIIWYGGYRVMGGALTLGALVAFIQ
                     YSQALFQPIRDISDKYNVLQAAVVASHRIFKTLDLPIAILPPEKALKAERARGRIEFQ
                     NVWFAYNDEDWVLKDVSFTVEPGQSIALVGHTGSGKTTITNLLMRFYDIQKGRILLDG
                     VDLRDWDLQALRQNFAVVLQEVFLFSGTVEGNIRLGREEITEDRVQWAAREVHADGFI
                     NRLKGGYKAEVRERGAGLSVGQKQLISFARALAFDPALLILDEATSSIDTETEQLIQR
                     AIERVMRDRTSIVVAHRLSTIQNADRIIVLHHGEIREQGTHQELLAERGLYWKLYKLQ
                     YADPSYREAVT"
BASE COUNT          810 a         1083 c         1112 g          835 t
ORIGIN      
        1 tctttcgctt tgagatcttt gaagtagacg cggttcttga cgtcagtgcc ctggtagatc
       61 gtgacgatca ggtagttgcc gtcttccgtg actgaagcgc cgaagagcca gtctttctga
      121 tcgggacgtt cgtaaacgag aatgtcttca gcctgtggcg tgccgagtcg gtggtagtaa
      181 actttctgga aatagttcgt ggctctgagc gcgtctgctt ttggttcgtc gtagcggttg
      241 tagaagaagc ccttgccgtc gcgcgaccac gacacaccgg aaaacttcac ccacttcaga
      301 tgatctgaaa gatctttgct ggtttcgacg tcgcgaactt tccactcctg ccagtcagag
      361 ccggatgctg agagactgta agcgagcagt ttgccgtcag gacttacctg cagaccagaa
      421 accgcgactg tgccatcggg cgacagtgtg ttcgggtcga gaatcatttg cggctgcgcg
      481 tcgagggccg tgacggtgta aagaacggat tggttctgca ggccgctgtt gcgcgtgtag
      541 aagtaacgat tgccctcttt gaacggcacg ccgtacttct cgaaattcca gagttttgtc
      601 agtcgttcgc gaatcgctgt gcgctgcggg atcgcgttta gaaaggcgaa tgtcagattg
      661 ttttgcgcct cgacccattt gcgcgtttct tcggagtcga ggtcttcgag ccagcgatac
      721 gggtcggcga cttttacacc gtgatagtcg tcgacctgat cggcctttct ggccaccggg
      781 tatttgttgg tttggatcat aaatatggct gttgtgatta ggcacacgag tacgaatcgg
      841 gtcagtgggt tatatggcat cacaaagctc ccttctgatt tcttggagac aacgcagtgg
      901 gtgtaatcgg gagaagagta tacaaaggat tctgatgcgc acaaaacagt tgacaactct
      961 tcgaaggatg cgcgaatcta accgagcgct caccaagccc ccggcgagca tattttagtc
     1021 cgcagctctc ccggagaagc aatgaaaatc agaattcttt tcgtcctgac tctcgctcta
     1081 ttcctgtttt caaccgcacc cattcaggct caggctcagg aaaataatac ggaccagact
     1141 gtacgtccgc gtacgatcac gccgccggcg gtgaatccga acgtcccggt gccgggtggc
     1201 gcgccggcag ccgcggcgcc ggaaatacag aagggcatgt cgctgcctct gacttacatg
     1261 acgccgtcga tgattcagtc gcgtatcggt gaggcgcagc ggatgttgaa gacgcgtccg
     1321 atggccacgg cgttgaccac tccgtcgatc cagtttgtaa ctgttgcggc gctcgatcgc
     1381 gacactggca agacgcacct gattacgatt tccaagcaga cgtttctgac gaagggcgcg
     1441 gagatcagca cgatcacgtc gttgggaacg aacgttaacg tgcgcgtgct gcgggcgaat
     1501 ggcgttaaca ctgcgttgac gatctttacg ccgggtggac agtcgctcgt gccgttgacg
     1561 gttgagtatc cgattgaaag aaacggattg ttccgcgaga tggcgtatta cacgtcggcg
     1621 catccggcgc tgctttcgag tgaccttgtg agatcgggac aatcgtacgt gcgcaacatg
     1681 cttgatctcg cggcgacgcg tttgcgcgat cgtggcgtgg tggtctcgcc gcagatcatc
     1741 gacgttgcgg agcggctgtg tttagtcgag cacgtcgacc acgaacgttt ccgttcggaa
     1801 aaccggctgg cgctttacga agaggtctat tcgctgtttg cgttgaacga gctcgacacg
     1861 tatcgctttg cggtgagcag tgcgggcgca ggcggcatgg tgcagatgat tccgtgggcc
     1921 tacaacctcg tgcgctcgcg gcatccgggc gtcggtttga ttcctgattt tgtgacgggc
     1981 atgcgcaacc acgcgaacgc gctgcaggcg atgctgctct acatgcacga cacgtggaat
     2041 gacctgactg caaacagcga agtgcagtac gcgctcggcg cgaagatcgc gacaccggcg
     2101 gaattgcttg cggctggtta caactccaac gccgccaagc tgcccggcta catcaagcgc
     2161 ggcggcgaca actggcgcac attgatccct cgcgagacac agatgtacct ggcaatctac
     2221 aaatccttcg agagcctcgt gcccttaaaa acacgcgccg gcgcaccagc cgccgccgct
     2281 aagtgacggc ttcgcggtag gaggggtcgg cgtattggag tttgtagagt ttccagtaga
     2341 ggccgcgctc ggctaataat tcctgatggg tgccctgctc gcggatctcg ccgtggtgca
     2401 ggacgatgat ccgatccgcg ttttgaatgg tcgagagacg gtgtgcgacg acgatcgatg
     2461 tgcggtcgcg cattacgcgt tcgatcgcgc gctggatcag ttgctcggtt tcggtgtcga
     2521 tcgagctcgt ggcttcgtcg agtattaata gtgcagggtc gaaggccaaa gcgcgcgcaa
     2581 atgagatgag ctgcttctgc cccaccgaaa gccccgcgcc gcgttcgcga acttccgctt
     2641 tgtaaccacc cttcaaacga ttgataaacc catccgcgtg aacttcacgc gccgcccact
     2701 gcacgcggtc ttcagtgatc tcttcacgcc cgagacgaat gtttccttca acagtgccac
     2761 taaacaaaaa cacttcctgc aacacgaccg cgaaattctg ccgcaacgcc tgcaagtccc
     2821 aatcgcgcag gtccacgccg tccagcagta tgcgtccctt ttgaatatcg tagaaccgca
     2881 tcaacaagtt cgtgatcgtt gtcttacccg aacccgtgtg gcccacgagc gcgatcgact
     2941 gccccggctc aaccgtgaac gaaacgtctt tcaaaaccca gtcttcgtcg ttgtaagcaa
     3001 accacacgtt ctgaaactcg atgcgcccgc gcgcgcgctc cgctttcaac gccttctccg
     3061 gcggcaggat cgcgatcggc agatcgagcg tcttgaagat gcgatgcgac gcgacaaccg
     3121 cggcttgcaa cacgttgtac ttgtccgaga tgtcgcggat cggctgaaac agcgcctgcg
     3181 aatactgaat aaacgccacc agcgcgccga gcgtcagcgc gccgcccatc acgcgatagc
     3241 cgccgtacca aatgatcagc gcgatgccga cggcgccgat gagatcgacg agcggaaaaa
     3301 acaccgcgta gtaaaagatg gtgtcgatgt tcgcgcggcg atactcatcg ttgatgttgt
     3361 cgaacgtgtt cagcgacttg gtttccgcgt tgaagatctg gaccgtttgc gcgcccgcga
     3421 agtgctcctg cagaaacgcg ttgatgcgcg cgatgcgcgt gcgcacgagg tcgtaaccac
     3481 gccgcgcgcc acgccgaaac cacgtcgtcg ccgcaaacaa cagcggcacc gtcaagagcg
     3541 tcacaagcgt gagtctcacg tccatccaca acatcaccga gatgatcgcc aggatcatca
     3601 cgaggtcgcc gagcagatcg gtcacgcccg ccgtgaacag ctcattgagc gcgtcgacgt
     3661 cgctcgtcag ccgcgtcatg attcgcccga caggattgcg atcgtagtaa gcgacttcct
     3721 gatgttgcag cttgtcgtaa agctctttcc gcatgtcgaa catcacgtac tgtccgacgc
     3781 tgttgagcaa gatcacctgg aaatacgaga agacgagacg cagcagttgt gtaccgaaaa
//
LOCUS       DASWTX010000377         5625 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_309747, whole genome shotgun sequence.
ACCESSION   DASWTX010000377 DASWTX010000000
VERSION     DASWTX010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5625
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309747"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..4176)
                     /locus_tag="VGD38_05855"
     CDS             complement(1..4176)
                     /locus_tag="VGD38_05855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727577.1"
                     /translation="MKMPSNLMQLRVIAFSMVLIIVPFFVYYYFFVSNQTKYFNGRNL
                     RTLATLSNHIQESADSQGNVFKNAVEKYVQDAVQRRSDKLETPPTAKDLVQNGHNEFQ
                     EKQLNPLRTERQGPVLEATNLSVVSKPEDDSLLLAPRIEVKEESNKSWLFFDYTVQYP
                     PASKGPAASNRDSKTKPASEATTPAKPIPVEYLNFKAKVNLENLIGPFVNEREMQENR
                     GALYHDGFDAVLIAGLDDQMTILFQESSQKLRMVSLSNLTSATGAKIDLKLMGQSANI
                     SDVRLGPADYKLFVQPFQLPLMKAGAKNHESIRWLACGLVENLHFQQQRLAISYNVLI
                     AFGFISVLVAVSWAFLKLIFIGPKDRFRSIDGYMLGASAFMIVALLTIIALFTYGYNA
                     TLNQVDGGLKQFAGSLKTNFFSELEDALIQIDYLNCMLDAKTVEAADKVTDRNLDKLA
                     FRSSILNSGEITAKSPYPFLQTAFWINEKASQQMKWTVRSTVTNRIDVSSRDYYSRLK
                     QGRQYTLKDKTGQTHEFWIQPVTSTTTGLNTVVVSKRAKAMELLTNKIRANAAAAAAA
                     KEAKPAKDAKPAKPANGTEPSSIWVSAIDMRLLSLMQPVIPEGFGYAVIDNNGKVLFH
                     SAEKLHLGENLFEECDNNQALKAAVLGRWSKSLTSSYFGKGHSIYVEPMGNFSWTIVA
                     FSEKDSLRTTFFEILTLCLLLFLSYVIVLSLLLLAIYLINRKSSDRSTWLWPDERKRS
                     FYVGAIAVNSVLFLLSCFAVYELRGLWKLGLPTLIGLAAVALTFWRFKRAEPADEQEK
                     PGWFDYRTAYVVNVTLLFCLASILPAYACFKIAYVQEMKLFIKHGQLNLAELFDGREA
                     RIRAQPNYVYRNTAKEKADALVQRRIKDERDLYYSFFFETEQRQQDALETYTNAPPSR
                     LLTFFKGFVPLFDHSSVTRHALTDMADDNSRSWDDFTGTSLVLHAREPQPHGAGKKER
                     RIESHLPRLRGLSWWLMLPLVFVAASMLVYYMVRQLFLFAREQKASDELTELWGKAIS
                     PNVLLVLGQSFIGKSQLLKRIGENGGNRIDFKNVAQQESWLKQVELLQPDVPVVLDNF
                     DHGIDESESDEHKVSLLKALRENNRRTIALSTVDQERLLLPNGRNGYTNGNGNDAATT
                     LPVRVFSERWIDEVSHFLRVEPGDVGDADSFSTALDRSKDRLLATPDLDEEAKKQIDE
                     SFKLIENECKVRAYLQNIGRAVANQSQLAQVSEASLYKQIMINARPYYASIWNACSGE
                     EKLTLTRLAQHGLLSPKDPDVDELLRKGLIARDPALRIMNESFRLFILSRGNDDAIAK
                     CELDAKSSSNWEVLKVPLTIGLLSVGAFLLLTQRELYNSALPFLSGLAAGLPALLKLV
                     SLFQSGSGAKAGS"
     gene            complement(4449..4525)
                     /locus_tag="VGD38_05860"
     tRNA            complement(4449..4525)
                     /locus_tag="VGD38_05860"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4489..4491),aa:Arg,seq:tcg)
     gene            complement(4572..4985)
                     /locus_tag="VGD38_05865"
     CDS             complement(4572..4985)
                     /locus_tag="VGD38_05865"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEY0727578.1"
                     /translation="MKIILLALSCVAFALVGIACTETATPTNTATPRAATSPAAPSPS
                     PSVDELANARANFAKNCEGCHGPEGEGGLAKVDNKQIKVPSLRAAHAIKHTDAEMIDY
                     ITNGHEAMPAFKDKLTPAEVTELVRYVRKTFQGKG"
     gene            complement(5064..>5625)
                     /locus_tag="VGD38_05870"
     CDS             complement(5064..>5625)
                     /locus_tag="VGD38_05870"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEY0727579.1"
                     /translation="YQLLKYVPGGLGSIVGVIIPTIGLAILLLLPRLKAQRLLGSTIL
                     AALTLTIMTMTTAAYITDAHTREQLARQAAEENNWRNEPFNPQLLQSAQRESQTATDG
                     PPEMYMKFCVNCHGPRGEGAQQGTLRFPPLLDVASKPRRTAEDIVGLLKDPTAYGLQP
                     PMRSFSDKLTDQQMREIADWVVRLKR"
BASE COUNT         1209 a         1502 c         1568 g         1346 t
ORIGIN      
        1 tcaggaaccg gccttcgcgc cggaacctga ctgaaacagg ctaaccagtt tgagcaacgc
       61 gggcagtccc gccgccaaac cgctaaggaa cggcaacgcg gagttgtaca actcgcgctg
      121 ggtcagaagc agaaacgcac cgacgctcag caaaccaatc gtcagcggca ctttcagcac
      181 ttcccagttg ctgctactct tcgcatccag ttcacactta gcgatcgcgt cgtcgttgcc
      241 cctgctgagt atgaagagtc tgaaactctc gttcatgatc ctgagcgccg gatcgcgagc
      301 gatgagccct tttctcaaga gctcgtccac gtccggatct ttcggactca acaatccgtg
      361 ttgcgccaaa cgtgtgagcg ttaatttctc ttcacccgag caagcattcc agatcgacgc
      421 gtaataaggt ctggcgttga tcatgatctg cttgtacaga ctggcctcac taacctgcgc
      481 cagttgcgac tggttcgcga ccgctcgtcc gatgttttgc aggtatgcac gaaccttaca
      541 ctcgttttcg atcagtttga aggactcgtc gatctgcttt ttcgcttcct catccaaatc
      601 gggcgtggcc aagagtcgat ctttgctacg gtccaaggcc gttgaaaacg agtcagcgtc
      661 acccacatct ccaggctcca ctctcaagaa gtgactaacc tcgtcgatcc aacgctccga
      721 gaaaacccga accggcagcg tagtcgccgc gtcgttgcca ttgccgttcg tataaccatt
      781 tctaccgttc ggcaacaaca accgctcctg atcgacagtg gacagcgcga tcgttctgcg
      841 gttgttttcg cgcagcgctt tgagcagact gaccttgtgt tcgtcactct cgctttcgtc
      901 tatgccgtga tcgaaattat caagcacaac cggaacgtcg ggctggagga gttcaacctg
      961 tttcagccaa ctctcctgct gcgcgacgtt cttgaaatca attcggttcc caccgttttc
     1021 tccgattcgc ttcagtaact ggctcttccc gatgaaagat tgaccaagca ccagcaacac
     1081 gttcggagat attgccttgc cccataattc ggtcagttcg tcactcgcct tttgttcgcg
     1141 ggcaaacaga aacagttgcc gaaccatgta gtacacaagc atcgacgctg ccacaaacac
     1201 gagtggcaac atcaaccacc aactcaagcc cctgagacgc ggcagatgcg actcgatgcg
     1261 ccgctctttt ttgccggcgc catgaggctg cggctcacgc gcatgaagca cgagagacgt
     1321 tcccgtgaag tcgtcccaac tccgggagtt gtcatcggcc atgtcggtca acgcgtgccg
     1381 cgtgacgctg ctgtgatcga acaacggaac gaaccctttg aaaaacgtca gcaagcggct
     1441 cggcggcgca ttcgtgtatg tttcaagcgc atcctgctgc cgctgttctg tctcgaagaa
     1501 gaacgagtaa taaaggtcgc gctcatcctt aatccgccgc tggaccagcg catctgcctt
     1561 ttccttagcc gtgtttcggt agacgtagtt gggctgagca cgaatacgag cctcgcgacc
     1621 atcgaaaagt tccgcgagat tcagttgccc atgcttgatg aacagcttca tctcctgaac
     1681 gtaggcgatc ttgaagcacg catacgcggg caggatgctc gccaaacaga acaagagtgt
     1741 gacgttcacg acatacgccg tgcggtaatc gaaccatccg ggtttttcct gttcgtcagc
     1801 cggctctgcg cgtttgaatc gccagaacgt gagagcaacg gctgcaagac caatcaacgt
     1861 cggcaaacca agcttccaca atccgcgcag ctcgtaaacc gcaaaacacg aaagcaggaa
     1921 cagcacgctg ttcaccgcaa tcgcgccgac gtaaaacgat ctcttacgtt cgtcaggcca
     1981 gagccatgtc gagcggtcgc tactcttgcg attgatcaag tagatcgcca acagcagcag
     2041 agacaacacg atcacgtaag aaaggaacag cagcaggcac agcgtcagga tctcgaaaaa
     2101 cgtggtgcgc agcgaatcct tttcgctgaa cgcgacgatg gtccacgaga agtttcccat
     2161 cggttcgacg tagatgctgt gtcccttgcc gaaatacgac gaggtcaacg acttgctcca
     2221 cctgccgaga acggctgctt tcagcgcctg gttgttgtcg cattcctcaa agaggttctc
     2281 gccgagatga agtttctcgg ccgaatggaa gaggactttg ccgttgttgt cgatgacggc
     2341 ataaccaaag ccttcgggaa ttaccggctg catcaacgag agcagccgca tatcgattgc
     2401 cgacacccaa atggaactcg gctccgtacc attcgcgggt ttggcgggtt tagcgtcctt
     2461 ggcgggtttc gcctccttgg cggctgcggc agccgcagcg ttcgcgcgga ttttattcgt
     2521 caacagctcc atcgctttcg cgcgtttgga gacgacgacg gtgttcaagc cggtagttgt
     2581 agaagtaacc ggttggatcc agaactcgtg agtctgaccg gtcttgtcct tcaacgtgta
     2641 ttgccgcccc tgtttgagcc gcgagtaata gtcacgggat gagacgtcga tgcggtttgt
     2701 gacagtggag cggacggtcc acttcatttg ctgtgaggcc ttttcgttga tccagaacgc
     2761 agtctgtagg aaaggatacg gagacttcgc agtgatctct ccggagttca ggatcgagct
     2821 gcggaacgcg agtttgtcga gattgcggtc ggtaactttg tctgctgctt cgacagtctt
     2881 ggcgtccagc atgcagttca agtaatcaat ctgtatcaga gcatcttcca gttcgctaaa
     2941 gaagttggtc tttagcgagc cggcgaactg tttgagaccg ccgtcgacct ggttaagcgt
     3001 cgcgttatag ccataggtaa acagtgcgat tatcgtgagc agggcgacaa tcatgaaagc
     3061 agaggcgccc agcatgtaac cgtctatcga ccgaaaacga tcttttggac caatgaaaat
     3121 cagcttcagg aacgcccaac tcaccgccac cagcacggag ataaaaccaa acgcgatgag
     3181 cacgttgtat gagatcgcga gtctctgctg ttggaagtga aggttctcaa ccagaccgca
     3241 cgccagccag cgaatcgact cgtgattctt ggcgcccgcc ttcatgagtg ggagttgaaa
     3301 tggctgcacg aacagtttgt aatccgctgg gccaagtctc acgtccgaga tgttggctga
     3361 ttggcccatg agcttgagat cgatcttcgc gcccgtggcg gacgtgagat tactcaagga
     3421 gaccatgcgc aatttctgcg agctctcctg gaagagtatc gtcatctgat cgtcgagccc
     3481 ggctatcaac accgcatcga agccgtcgtg gtaaagcgct ccccggttct cctgcatctc
     3541 gcgctcgttg acgaatggac caatgaggtt ctccaggttc accttggctt tgaagttcag
     3601 gtattcgacg gggatcggct ttgcaggtgt cgtcgcttcc gaggccggct tcgttttcga
     3661 atcgcgattg gaagcggccg gccccttgga agcgggaggg tattgaaccg tgtagtcgaa
     3721 aaagagccaa ctcttgttcg actcttcctt cacttctatc cgcggagcaa gaagtaacga
     3781 gtcgtcttcc ggcttggaca cgaccgacag gtttgtcgcc tctaaaacgg ggccctggcg
     3841 ttcggttcgc agcggattga gttgtttctc ttgaaactcg ttgtgcccgt tttgtaccag
     3901 gtccttcgct gtgggtggcg tttcgagttt gtcggaacgt cgctgcacgg cgtcctggac
     3961 gtatttctcg acggcgtttt tgaagacgtt gccctggctg tccgcgctct cctgaatgtg
     4021 attgctgagc gtggcgagcg tgcgcaagtt tctgccgttg aagtacttgg tctggttaga
     4081 gacgaagaaa tagtagtaaa caaagaacgg aacgatgatg aggaccatac tgaacgcaat
     4141 aacacgcaat tgcatgaggt ttgagggcat cttcatggcg gggacctcct tggtaactct
     4201 ccttgataac ttatgactcg gcgaaacgtt tttgtttctg cgaaagtcgt cagttcgaaa
     4261 aaaataactg ggaatctcag ggtgccgatg cggttggagc cgcatgggta cgaggacatg
     4321 cgaagtgcct gtgcctgata gaagtatgag aaatcaggcc ctgggaatct ctatctggcg
     4381 ccgattatcg tcctttcggc ccaatagtca agatttttat ctgtaacgat tttgtgaagt
     4441 gggaaggctg gtgcacccgg cagggctcga acctgcgacc ttttgattcg aagtcaaacg
     4501 ctctatccaa ctgagctacg agtgcacgcg gggaatggta aatggttcag gcgaattggt
     4561 aaagccgaag ctcaaccttt gccctgaaat gttttgcgca cgtagcggac cagttcggtg
     4621 acttccgcgg gcgtcagctt gtctttgaac gccggcatcg cttcatgacc gttggtgatg
     4681 taatcaatca tctccgcgtc cgtgtgcttg atcgcgtgtg cagcacgcaa tgacgggact
     4741 ttaatctgct tgttgtcgac tttagccagt ccgccctctc cttctggacc atgacatcct
     4801 tcgcagttct tggcgaagtt ggcgcgtgcg tttgcaagct cgtcgaccga ggggctcggc
     4861 gacggtgcgg ccggcgatgt agcggcacgc ggtgttgcgg tgttggttgg tgtggcagtt
     4921 tctgtgcagg cgattccgac taaggcaaaa gcgacgcagc taagagcgag cagaatgatt
     4981 ttcatcagcc agtttctccg tttgagtgtt cgtcgtttgg gggcgagtga gtatacaagt
     5041 tcgaaactgc aaagcacaaa accttatcgt tttagtcgca cgacccagtc ggcgatctcg
     5101 cgcatttgct ggtccgtcag tttgtctgag aaggaccgca tgggtggctg caggccgtag
     5161 gctgtcgggt ctttcagcag gccgacgatg tcttcggcgg tgcggcgcgg ttttgacgcg
     5221 acgtcgagca ggggtgggaa tcgcagtgtg ccttgttgcg cgccctcgcc gcgtggacca
     5281 tgacagttta cgcaaaactt catgtacatt tcgggtgggc catcggttgc agtctgcgat
     5341 tcgcgctgtg cggattgtag tagttgtgga ttgaacggct cgttgcgcca gttgttttct
     5401 tctgctgcct gtcgtgcgag ttgttcgcgt gtgtgcgcgt cggttatgta ggcggctgtt
     5461 gtcatcgtca tgatggtaag ggtgagcgct gctaaaatcg tggagcctag aagtcgttgc
     5521 gcctttaggc gaggtaataa aagcaggatg gccaaaccga ttgttgggat aattacgccg
     5581 acgatcgagc ccaaaccgcc gggcacgtac ttcaacaact ggtac
//
LOCUS       DASWTX010000378         2642 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_156341, whole genome shotgun sequence.
ACCESSION   DASWTX010000378 DASWTX010000000
VERSION     DASWTX010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2642
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156341"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..691)
                     /locus_tag="VGD38_05875"
     CDS             complement(<1..691)
                     /locus_tag="VGD38_05875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727580.1"
                     /translation="MTDSGDSTEKLKAEQAAKKLREEALPERILRRVLEGMGDVVDRR
                     FGRTVEPRSGLTTSKLIERMKKLIDERVRDEGNKGRIAPHHLILKVEWGTHSEAPPEI
                     LHDLKNEVLAAAIDHINDHRYRTLAPVAVEAEVDIFTTGISVDPTFGEFEEDLRRQDE
                     ERRAVKSGVPIPSAAPPMPDIQVIARITQQNGTREVPLVFKPGGKRLNVGRASDNELT
                     LNDGSVSKIHAA"
     gene            complement(843..>2642)
                     /locus_tag="VGD38_05880"
     CDS             complement(843..>2642)
                     /locus_tag="VGD38_05880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727581.1"
                     /translation="TSLAFRYNFADSDASTRGVNGFSLNTTNRIRVRTQTITATVDHT
                     LSPTKIFELRGNYSRSRAGGSYLLDEFGGASLPEDFAGVANGSFAFDLNARGASLISG
                     GEVANVQRQLNLVGSSTMVFGNHDFKFGADYRRVSPVLASRRFEESVLFNGVTQALTG
                     IPTRVNNLTRISPQTPVFHNLSVYVQDEWRKTPRLKFTYGVRWELNPAPENPGSGSRL
                     WETTYANFAPRFSFAYDLSKHQSETLILRGGIGIHYGLGHEFTGDAFVDSLPFIDGSS
                     TGSSLLPLGGGLPLVTFDPHLKLPYVLNRNVALQRAFGSSQTLTAAYVASTGRRLLST
                     QTLFDNDPQFSFLRSVSNRADSDYRSLQLQFDRRLADGLKVMVSYTWARSTDNANRDS
                     ARRVLLASPNPANDLGASDFDVRHALNGFISYELPAPLAYGLGNRLFRNWTIESFFAA
                     RSAKPVNVLYGFPTTYGFAYVRPNVVAGEPFYLFDPAFAGGWRLNPNAFSIPSEFKQG
                     DLARNSLRGFPFYQIDLALLRSFNLSESTNLQFRADAYNLLNHPNFEDPLGSDLHLGS
                     TFGQSTALAGRGFDSFYTVGGSRTLRFSVRLSF"
BASE COUNT          598 a          694 c          789 g          561 t
ORIGIN      
        1 aagctgcgtg gattttcgaa acactgccgt cgttcagcgt caattcgttg tcggaagcgc
       61 gtccgacgtt tagccgttta ccgccaggtt tgaacactaa tggtacttca cgtgttccat
      121 tttgttgcgt gatccgggcg atgacctgga tgtcgggcat cggcggcgcg gcgctgggaa
      181 tcggcacgcc gctcttaacc gcgcgccgct cttcgtcctg gcggcgcagg tcttcttcaa
      241 actcgccaaa ggtcggatcg acggagatgc cggtcgtaaa gatatcgact tcggcttcta
      301 cggcaaccgg ggcgagagtt cggtaacgat gatcgttgat gtgatcgatc gcggcggcga
      361 gcacttcgtt tttcaggtcg tggagaattt ccggcggtgc ttccgaatgt gtgccccatt
      421 cgactttgag tatcaggtgg tgcggcgcga ttcgtccctt gttgccctcg tcgcgcacgc
      481 gctcgtcgat caacttcttc atgcgctcga tgagtttgga agtggtgagt ccgctgcgcg
      541 gttcgacggt gcgtccaaag cgtcgatcga cgacgtctcc catgccttcg agcacacggc
      601 gcaggatgcg ttcgggcagt gcctcctcgc ggagtttctt cgcggcctgc tcggctttga
      661 gcttttctgt cgaatcgcct gaatcagtca tgaataatca atacgagatt tatgtcgcgc
      721 agttcaaacg ctcaagctaa aaacgcagtc ataacttgtg actgcgctag ataagggctg
      781 attgctgggt cgcggctatt ctagcctaaa cggcgggata gttagtagag gatcggagcg
      841 gctcagaacg ataacctcac agaaaacctt agcgtacgag agccgccgac ggtgtagaac
      901 gaatcaaagc cgcggccggc gagtgccgtt gactggccga acgtcgagcc gaggtgcagg
      961 tcgcttccca gtggatcctc aaaattcgga tggttcagga ggttgtatgc gtccgcgcgg
     1021 aattgcagat tcgtgctctc cgacaggtta aagcttctga gcaacgcaag gtcgatctgg
     1081 tagaagggaa aaccacgcag gctgttacga gcaaggtcgc cctgtttgaa ctctgaagga
     1141 atcgagaagg cgttcgggtt tagccgccaa cctccggcga aagccggatc gaacaaataa
     1201 aatggctcgc cggcgacgac gttcggacgc acatacgcga acccataagt tgtcgggaag
     1261 ccgtagagca cgtttacagg tttcgcagaa cgtgcagcga agaacgactc gatggtccaa
     1321 ttacgaaaca gccgattacc gaggccatag gccagcggcg ccggaagctc ataggaaatg
     1381 aatccattca gcgcgtgtct gacgtcgaaa tctgacgcgc cgagatcgtt tgcgggattc
     1441 gggctcgcga gtagcacacg ccgcgctgag tcgcggttcg cgttgtcagt ggatcgcgcc
     1501 caggtgtagg aaaccatgac tttcaatccg tccgcgagcc ggcgatcaaa ctgcaattgc
     1561 aacgaacgat aatctgagtc cgccctgttg ctgaccgatc gcagaaatga aaactgcggg
     1621 tcgttatcaa acagagtttg agtgcttagc aaacgtcgtc ctgtagacgc gacataggcg
     1681 gccgtaaggg tctgcgaaga accaaatgct cgttggagcg cgacattccg gttcagcacg
     1741 tatgggagct tcagatgcgg atcgaaggtc accaaaggca ggccgcctcc gagtggcaat
     1801 agagaactgc cggtcgacga gccatcgata aagggcaggg aatcgacaaa ggcgtcgcct
     1861 gtaaactcat gcccgagacc ataatgaata ccaataccgc cgcgcagtat tagagtctcg
     1921 ctctgatgtt tcgagagatc gtaggcaaag ctaaagcgag gggcaaagtt cgcgtaagtc
     1981 gtttcccata aacgactgcc tgagcctgga ttttcaggcg cgggattgag ttcccaacga
     2041 acaccgtagg taaatttgag ccgcggagtt tttcgccact cgtcctggac gtaaaccgac
     2101 aggttgtgga agacgggcgt ctgcgggctg atgcgtgtca gattattgac gcgcgtcgga
     2161 ataccggtga gcgcctgagt cacgccgttg aaaagcacgc tctcttcgaa tcggcgtgaa
     2221 gcaagaactg gtgagacccg gcggtagtcg gcgccaaact tgaaatcgtg gttaccgaaa
     2281 accatggtgc tcgagccaac caggttcagc tgacgttgca cgttcgcaac ctcgcctccc
     2341 gaaatcaagc tcgcgccacg cgcgttcaaa tcgaaagcaa acgagccatt ggcaacacca
     2401 gcaaaatctt cgggtaaaga ggcgccccca aactcatcca gcaagtagct tccaccagct
     2461 cgcgatcggc tgtagttacc gcgcaactcg aatatcttcg tgggtgacag ggtgtgatct
     2521 accgtcgcgg tgattgtctg cgtccgaacg cgaatgcggt tagttgtgtt gagcgagaat
     2581 ccgttgacgc cgcgcgtcga agcgtctgag tctgcgaagt tgtagcgaaa ggcgaggctg
     2641 gt
//
LOCUS       DASWTX010000379         1885 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_353342, whole genome shotgun sequence.
ACCESSION   DASWTX010000379 DASWTX010000000
VERSION     DASWTX010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1885
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_353342"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(118..972)
                     /gene="lpxC"
                     /locus_tag="VGD38_05885"
     CDS             complement(118..972)
                     /gene="lpxC"
                     /locus_tag="VGD38_05885"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: protein motif:HMM:TIGR00325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HEY0727582.1"
                     /translation="MIKQTTLASAVETHGIGLHTAVPVQIRLLPAPPDSGYVFRRTDL
                     GGFEIPATVESVANCGYATTLMRTGVMLSTVEHLLAALRGLNVDNVFIEVDNLEIPIM
                     DGSAENFAEIIERAGIVEQPLARRALLVREKVSFEQGNRRISVEPADTYQIDCLIDFS
                     HPLIGVQSLFVELSNGAFSRDIAAARTFGFTEEIEALRRANLIRGGSLDNAIVLTRDG
                     MLNETGLRFRDEFVRHKILDIIGDLALLGMPILGKVVAERSGHIMHAGLMSKLLRVRS
                     AWDIVDMR"
     gene            1629..>1885
                     /locus_tag="VGD38_05890"
     CDS             1629..>1885
                     /locus_tag="VGD38_05890"
                     /inference="COORDINATES: protein motif:HMM:NF027439.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HEY0727583.1"
                     /translation="MAYETIQLEMHGSICVLTLNRPDRLNALTVQTAQDFNAAVHEAL
                     ERGARAIVLTGSGRAFCAGGDLREMQEMASSDGRVEAFFDEP"
BASE COUNT          433 a          533 c          529 g          390 t
ORIGIN      
        1 cgacgcgttg caattaatgg aagatcgccc gtcgcagatc tctgtgttgc cggtgatcga
       61 cggcgagcaa aagtgtgtag ggttaatccg tgttcacgat attgtgagaa gcgggctcta
      121 gcgcatatcc acgatgtccc acgcggacct cacgcgcagt agtttcgaca tcaatcccgc
      181 atgcatgatg tgaccgctgc gttccgcaac gacctttccg agtatcggca ttcccaacag
      241 cgcgaggtcg ccaatgatgt cgagaatctt gtgacgcaca aactcgtcgc gaaaacgcaa
      301 tccggtttcg ttcaacattc catcacgcgt cagcacgatc gcgttgtcga gcgatccacc
      361 gcgaatcagg ttcgcacgcc gcagcgcctc aatctcttca gtgaagccaa acgttcgcgc
      421 cgccgcgatg tcgcggctga aagcgccatt gctcagttcc acaaacaaac tctgcacgcc
      481 gatcagcgga tgtgaaaagt cgatgagaca gtcgatctga tacgtatctg cgggttcgac
      541 gctgatacgg cggttgcctt gttcgaacga caccttctcg cgcaccagca gcgcgcgccg
      601 cgcaagcggc tgttcgacga tacccgcgcg ctcaatgatc tcggcgaagt tctccgccga
      661 accgtccatg atcggaatct cgagattgtc gacctcgatg aaaacgttgt cgacgttcaa
      721 accgcgcaat gccgcgagta agtgctccac cgtcgataac atcacgcccg tacgcatgag
      781 cgtcgtggcg taaccacaat tcgcgacaga ctccaccgta gcgggaattt caaaaccacc
      841 aagatcggtg cgacggaaga cgtagccgct atccggaggc gcaggaagca aacggatctg
      901 caccggaaca gcagtgtgca gacctatgcc gtgcgtttca actgcggaag cgagggtcgt
      961 ctgtttgatc aatctgtcgg gcccaatccg ttaatagtcg gcattttcgt cgaaatttag
     1021 gagcaacacg tgtgccgagt gaatttacgc actcgcgaga aggttggtgt cgcgctgacg
     1081 ccacaatcgg cggccggcgg tggtgagatc gcgcaacatt taaagtttga atacgctcat
     1141 ttgctggagt aaactcagga ccaaataaac cagtcgggac gccagctttt cggcgtagtg
     1201 tttgagaaaa agcgctttcg ccccacatcc agtggttgaa agaaacgcca cgccagcgct
     1261 ccgaagagca aagagagtgg acgtcctctg tccacctcgt ggagaaacgc gatgccagat
     1321 cttgaaataa cgtgttcgga gtgcagttct ccgttcacat ttaccgaacg ggaacaggag
     1381 tactataggg aacgtaatct gactcaccca aaacgttgca agccgtgtcg tgacgcgcgc
     1441 cgcgccaact ttggcagtcc ttcgaggcca tcaggtggcg accgtcagcg tttcgacatt
     1501 acttgcgatc aatgcggcaa gaacgattca gttccgttca agccctcgtc aggccggccg
     1561 gtattgtgca gcgactgctt tagtgcgagc cgttcacagc cgcgcggctg acgtttgatt
     1621 taatattgat ggcttacgaa acgatccaat tggagatgca cgggtcgatc tgcgtgttaa
     1681 cgctcaatcg acccgatcgc ttgaacgcgc tgacggtcca aacggcgcag gatttcaacg
     1741 ccgccgttca tgaagcactc gaacgcggcg cgcgcgcgat cgtgctcaca ggttcgggcc
     1801 gcgcgttttg tgccggtggc gacttgcgcg agatgcagga gatggcgagc agcgacggac
     1861 gagtcgaggc tttcttcgac gaacc
//
LOCUS       DASWTX010000380         1945 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_374703, whole genome shotgun sequence.
ACCESSION   DASWTX010000380 DASWTX010000000
VERSION     DASWTX010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1945
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_374703"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(172..1062)
                     /locus_tag="VGD38_05895"
     CDS             complement(172..1062)
                     /locus_tag="VGD38_05895"
                     /inference="COORDINATES: protein motif:HMM:NF039315.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5996 family protein"
                     /protein_id="HEY0727584.1"
                     /translation="MSNTWPSLPLDQWKDTCATLHMWTQIVGKVRLAQTPLVNHWWNV
                     PLYVSARGLTTTAMTYGEIFFEMEFDFIDHALVITSSEGRSARVALVPKSVATFYHET
                     MDALRQLGIEIDIWKMPVEIPDPIAFDQDEQHASYDPNYVSRFWQVLRSSERVMQEFR
                     ARFIGKSSPVHFFWGSFDLAVTRFSGRPAPPKPDADSITREAYSHEVISHGWWPGQGP
                     LGKAAFYSYTAPAPEGLGEVKVQPEQAYYNAEMGLFLLLSEDMQNAASPDETLMSFLQ
                     STYEAGANLAKWDRPALERD"
     gene            1338..>1945
                     /locus_tag="VGD38_05900"
     CDS             1338..>1945
                     /locus_tag="VGD38_05900"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase family protein"
                     /protein_id="HEY0727585.1"
                     /translation="MQSVVLKECNPQVAPGTVEANIGHTPLLRLRLVETDVQIFAKAE
                     HLNPGGSVKDRAALSMILEGERSGKLQPGMTILDATSGNTGIAYAMIGASRGYRVKVC
                     LPTNASTKRKQILRHYGVEIVETDPMLSTDGAQLIAREIFAAEPGKYFYPDQYNNDAN
                     WLAHYETTAPEIWEQTEGRITHFVTGLGTSGTFVGVVRRLREL"
BASE COUNT          434 a          557 c          542 g          412 t
ORIGIN      
        1 ggcgttcaat ctgtttaata gatcaaacgt ggcgaccgtg aatacgggcc gttacggaat
       61 cgcaagctcg gcggcggtcg tgttaacgaa cccggcagcg gcgacgccgt ttggtggacc
      121 acggacgttc cttggcgagc ggcagatcca gttggggttg agatttaagt tctaatctct
      181 ttcgagagcg gggcgatccc acttcgcgag gtttgccccc gcttcgtaag tgctctggag
      241 gaaactcatc aaagtttcgt cggggctcgc cgcgttttgc atatcctcgg acaacagtag
      301 aaacaatccc atctcagcgt tgtaatacgc ttgttccggt tggaccttca cttcacccag
      361 accttccggc gccggcgcgg tgtaggaata gaacgcggcc ttgccgagtg gtccttgtcc
      421 gggccaccaa ccgtgactga tcacttcgtg tgaatatgct tcgcgcgtga tcgagtcggc
      481 gtctggtttc ggcggcgcgg gtcttcccga aaatcttgta accgccagat cgaaactacc
      541 ccagaagaag tgcaccgggc tcgacttgcc gataaagcgc gcccgaaact cctgcatcac
      601 gcgctcagac gaacgtagta cctgccagaa acggctcacg taatttggat cgtacgacgc
      661 gtgttgctcg tcctgatcga aggcgatcgg atccggaatc tcgaccggca tcttccagat
      721 gtcgatctcg ataccgagct gccgcagcgc atccatcgtt tcgtggtaaa acgtcgccac
      781 cgattttggc acgagtgcga cgcgcgcgga tctcccttcg ctcgacgtaa tcacgagcgc
      841 gtggtcgata aagtcaaatt ccatctcgaa aaagatctcg ccgtaggtca ttgcggtcgt
      901 cgtcaacccg cgcgccgaca cgtaaagcgg gacgttccac cagtgattca caagcggcgt
      961 ttgggccagc cgcaccttac ccacgatctg cgtccacata tgcaacgtcg cgcaagtatc
     1021 tttccactgg tcgagcggga gagaaggcca tgtgtttgac atggccacag attaccgccg
     1081 aagtcccgcc gaagcaaaac gacgtgcaaa gacggattgc ttgacagtgg catagcgcga
     1141 gcctatagtt ttccacgtca tgatgaaggc ctgcatgtgg tgtctctgtt gcaactgttg
     1201 ctgctgttat tgcagcacga ccgagaggcc gtttgcgggc gggagaagcg ggtaggctaa
     1261 ccaccagcaa tttttaacgg cgtaaccggt cgcactttca aaggcgcgac cggttttgct
     1321 ttggtcttga aaccagtatg caatccgtag ttctaaaaga atgtaaccca caggtcgcac
     1381 cgggcactgt cgaagcgaat atcggtcaca cgccactgct gcgacttcgt ctcgtcgaaa
     1441 cagacgttca gattttcgcc aaagccgaac atctcaatcc cggtggctca gtcaaggatc
     1501 gggcagcgct ctcgatgatt ctcgaaggcg aacgcagcgg caaactacaa cccggaatga
     1561 cgatccttga cgcgaccagc gggaacaccg gtatcgcata cgcgatgatc ggcgcttcgc
     1621 gcggctatcg cgtgaaagtc tgtttgccaa cgaacgcgag cacgaagcgc aaacagatcc
     1681 tgcgtcacta cggcgtggag atcgtcgaaa ctgatccgat gttgtccacc gacggcgcac
     1741 agctaatcgc gcgcgagatc ttcgccgccg aaccgggcaa gtatttctat cccgaccagt
     1801 acaacaacga cgccaactgg ctggcccact atgaaactac tgcgcccgag atctgggaac
     1861 agactgaagg tcgcatcacg catttcgtaa ccggactcgg aacgtcgggc acgtttgttg
     1921 gtgttgtcag acgtttgcga gaact
//
LOCUS       DASWTX010000381         1952 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_331424, whole genome shotgun sequence.
ACCESSION   DASWTX010000381 DASWTX010000000
VERSION     DASWTX010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1952
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331424"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..954)
                     /locus_tag="VGD38_05905"
     CDS             complement(<1..954)
                     /locus_tag="VGD38_05905"
                     /inference="COORDINATES: protein motif:HMM:NF012662.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle receptor subunit
                     alpha"
                     /protein_id="HEY0727586.1"
                     /translation="MFESLSDKLKRTLKNLRGEGVLTKEHVDAALREIRLALLEADVN
                     YKVAKDFIASVQQKAEGQQVWQELKPSEQVVKIVFDELVELLGGQSSRLVFTKQIPNT
                     VMVVGLQGSGKTTSTGKIARWLAANQDRKPLLLSVDVYRPAAREQLKVIAKATGQQIF
                     EDPQTNDPMTLVRGALKHAQQTGFDTLMIDTAGRLHIDDELMEELVTIKNETHPVETL
                     FVADAMTGQDAVRSAEEFHRRVGITGVILTKMDGDARGGAALSIKQVTGQPVKFVGVG
                     ERYDALEPFYPDRVAQRILGMGDVLSLIEEVQSKVDQGEAEA"
     gene            1319..>1952
                     /locus_tag="VGD38_05910"
     CDS             1319..>1952
                     /locus_tag="VGD38_05910"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0727587.1"
                     /translation="MVDLADARVKIRSRVRPTTESLTRDLDEIRSLLDQGLSTDAKTR
                     LASLIANARNHQSILALARCALSITLEQQGHYRDSLAAVSMYETPESRAKLDNQTTSY
                     LRVQIGLGYNYNGDHPKAIAMLKSTLRDYSESGGTNLGHIYAALSRVYRTISEYPIAR
                     DYAQRALESFRQSGEWRGLAEAYFGVGVADIQEGNYEAGLENLEQALKLIG"
BASE COUNT          419 a          562 c          532 g          439 t
ORIGIN      
        1 cgcttcggct tcaccctgat cgactttaga ttgcacttcc tcgatcagcg acagaacgtc
       61 gcccatgccg aggatacgtt gcgccacgcg gtccggataa aacggttcga gcgcatcgta
      121 acgctcgccg acgccgacga acttcaccgg ttgcccagtg acttgtttga tcgaaagcgc
      181 agcgccgcca cgcgcgtcgc cgtccatctt cgtcaggatc acgcccgtga tgccgacgcg
      241 ccggtgaaac tcttccgccg aacgaacagc gtcctggccc gtcatcgcat ctgccacaaa
      301 cagcgtttcg accggatgcg tctcgttctt gatcgtgaca agctcttcca tcaactcatc
      361 gtcgatgtgc aggcggccgg ccgtgtcgat catcaacgtg tcgaaaccgg tctgctgtgc
      421 gtgcttgagc gcgccacgga ccagcgtcat cggatcgttg gtttgcggat cttcaaagat
      481 ctgttggcca gtcgccttgg cgatgacctt caactgttcc cgcgcggccg ggcggtaaac
      541 gtcaactgaa agcagcagcg gcttacgatc ctgatttgcc gccagccagc gcgcgatttt
      601 tccggtcgaa gtggttttac ccgagccttg cagcccgacc accatgaccg tgttcggaat
      661 ctgtttagta aaaacgaggc gcgaagattg gccaccgaga agttcaacca gttcgtcgaa
      721 gacgatcttt acgacctgct ccgacggctt gagctcctgc caaacctgct gcccttccgc
      781 cttctgctga actgaagcga taaagtcttt ggcgacttta tagttgacgt cggcctccag
      841 taaggccagg cgaatctcgc gcagcgccgc gtcaacgtgc tcctttgtaa gaacgccttc
      901 gccccgcaga ttcttcagcg tgcgctttaa tttatccgag agcgactcaa acatataact
      961 ctaggcgtcg gttcgcggtg cgaacggaaa cggaaatgat agcgggcgag tttaggggtg
     1021 tcaaggcgcg taactcacag cactagcgct atttcgcgag tcgggcggcc ctgaagattt
     1081 tgttgagttt gtacggaaac aaactgtacg ccgcgcgcct catgtgttaa attcaccacg
     1141 aataaatcgt ttgcgcggca aaaccgtaaa gctcctgtgc aaaaagacgg tttccctccc
     1201 agttcaaagc gtattgaaaa gtccacacta ttgaactttt tataggtact aaatggacaa
     1261 acgtgtcggt cacgggccct tgggacgtga tttagaaaat tcccctattg atcgaggtgt
     1321 ggttgatctc gcagacgctc gcgtaaagat tcgctcgcgc gtgcggccga ccaccgagtc
     1381 gttgacgcgc gatctcgacg aaattcgttc gctgttggac cagggtctat ctactgacgc
     1441 aaagacgcgg ctcgcttctc ttatcgctaa cgctcgtaat catcaatcca ttttggcgct
     1501 cgcgcgctgc gcgctttcga ttacgctcga acaacagggc cactaccgcg attcactggc
     1561 cgcagtttcg atgtacgaaa cacccgagtc gcgcgcgaag ctcgacaatc aaacgaccag
     1621 ttatctccgc gttcagatcg gtctcggcta caactacaac ggcgatcacc ccaaggcgat
     1681 cgcgatgttg aagtcgacgt tgcgtgatta ttctgaaagt ggcggcacca acctgggcca
     1741 catttacgcg gctttgtcgc gggtctatcg aacgatcagc gagtatccga tcgcgcgcga
     1801 ctatgcacag cgggcgttgg agagttttcg tcaaagcggc gagtggcgtg gacttgccga
     1861 agcgtacttc ggcgtcggcg tggccgatat tcaggaagga aattacgagg cgggcctcga
     1921 aaatctcgaa caggcgttga agttgatcgg cg
//
LOCUS       DASWTX010000382         4333 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_221093, whole genome shotgun sequence.
ACCESSION   DASWTX010000382 DASWTX010000000
VERSION     DASWTX010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4333
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221093"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..225
                     /locus_tag="VGD38_05915"
     CDS             <1..225
                     /locus_tag="VGD38_05915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727588.1"
                     /translation="DDEAAMNQLIRVLHSTGLLDGVLFFYPRKSDDAVITTTASSIWP
                     AGLNLRVVHPTDPAFLISGESEEPAHLVDE"
     gene            323..2317
                     /locus_tag="VGD38_05920"
     CDS             323..2317
                     /locus_tag="VGD38_05920"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEY0727589.1"
                     /translation="MRAFTAVSILVVLFVSTASAQTWDSELHLKVKAVVTPRVSPDGT
                     HVVYIVNEAVTGPDKSEFVNQIWMANIATKQSIQLTFGDKSSTNPKWSPDGKWIAFLS
                     NRKDNRNNLYRLSLAGGEAEPLTDLKSSVNNFNWSPDGRHIAYTTSDTKTEEEEKNDR
                     GRNDFRWVDENFKMARLYVIPVEKDGNGKREARKLTTGNYHVGEFDWSADGSRIAFSH
                     SKTPTANDWPTADVSVVEVANANVSVLANTTAAEDSPVYSPDGKFLAITASDIPPRWA
                     QAGMVQIYSTTGGQPKSVMASYDGQPGIIGWSADSKRIYFSEAKGTGTQIYVVDVAAN
                     RIDEIKSTPAVLSMFSLNRAGTTMGFVRQTSDTPADVFVSPLTEFAPVQITRANAELK
                     LPAIGRTEVIRWKSKDGREIEGLLTYPVGYEAGQRVPLLLNIHGGPAGVFQQTFLGGR
                     GIYPLATLAARGYAILRPNPRGSSGYGVEFRRANIKDWGFGDYHDVMTGVDKVIEMGV
                     ADPERLGVAGWSYGGYLTSWIVTQTNRFKAASAGAPVINLMSFNGTADIPGFIPDYLG
                     GQFWEIQELYQKHSPLFNVKSVTTPTMIQHGEADVRVPISQGYEFYNALKMKGVPTRM
                     LVLPRQPHGPNEPKMQLAAMNANLEWFDKYIGPKSQTSRN"
     gene            2321..3424
                     /locus_tag="VGD38_05925"
     CDS             2321..3424
                     /locus_tag="VGD38_05925"
                     /inference="COORDINATES: protein motif:HMM:NF017984.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0036297 - interstrand cross-link repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crosslink repair DNA glycosylase YcaQ family
                     protein"
                     /protein_id="HEY0727590.1"
                     /translation="MSESITLDELRRYTVARNFLKPTNLKTALHRMGFVQADPIRAPA
                     RAQDLILRQRVNNYRAGELERRYASLDVEEDFFINYGYVSRAVYSLMHPRVQRPFARV
                     DTPLPPGDRKRAQKVLEFVRERGSVHPREVDEYFAHGKVTNYWGGSSNATTHLMDAMH
                     YRGMLRVLRREKGIRIYAPLEHERVPISAAERRARIDALVDVVVGIYGPLPASSLTYY
                     VRRLRYAVPQWERDLTDALKRAKKRLRHARTDRDWYFPADEDPVRASQEDVVRLLAPF
                     DPVVHDRARFQLLWNWEYRFEAYTPVAKRKLGYYAMPLLWRDRVIGWANASVKDGARQ
                     CDIGYVESPPREPVFRRELEEELERLRRFLGLE"
     gene            3421..4155
                     /locus_tag="VGD38_05930"
     CDS             3421..4155
                     /locus_tag="VGD38_05930"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HEY0727591.1"
                     /translation="MKIHIGTSGWHYKHWLDDVFYPSGTKPAQMFDFYARHFDTVEIN
                     NSFYHLPSAKTFDNWRDSSPPKFLFAVKASRFITHMKKLKDPKPSSEKFFDVADRLGK
                     KLGPVLFQLPPRWKVNTERFAEFLESLPGGHKYVFEFRDETWFVPEVYALLRRHKAAF
                     CIHDFADMKVPQEITAPFSYIRFHGPTSAKYFGSYSTDELRVWAERIRDWRRQLKAIY
                     IYFNNDPGGEAVKNGLELKRMVAGLQ"
BASE COUNT          956 a         1137 c         1317 g          923 t
ORIGIN      
        1 gatgacgaag cggccatgaa tcaactgatc cgtgtacttc attcgacagg tcttctcgac
       61 ggtgttctgt ttttttatcc ccgaaagagc gacgatgcgg ttattacaac taccgctagt
      121 tcgatatggc cggctggatt aaatctgaga gttgttcatc cgacagatcc tgcgttcctg
      181 attagcggag aaagtgagga accagctcat ctagttgacg agtaatgcga gttcggggcg
      241 gggaaacttg cggaaaagac ctgtgtaatc ggcgaaatct gtgataaaag attcgccaca
      301 ttagttcagg agaaccccca tcatgagagc cttcactgca gtttccattc tcgtcgtact
      361 ttttgtctcc accgcgtccg cgcaaacgtg ggattcggag ctacacttga aagtcaaagc
      421 cgtggtcacg ccgcgcgttt cgccggacgg tacccacgtc gtttacatcg ttaacgaagc
      481 cgtcactggg ccggacaaga gcgagtttgt caaccagatc tggatggcaa acatcgcgac
      541 caagcagagc atccagctca cgtttggcga caagtcgtcg actaatccga agtggtcccc
      601 cgacggcaag tggatcgctt ttctttcaaa ccggaaggac aaccgaaaca atctctaccg
      661 cctgagcctg gccggcggcg aagctgagcc gctgaccgat ctcaagagct ctgttaacaa
      721 tttcaactgg tcgcccgacg gacgccacat cgcttacacc acgtccgata caaaaacgga
      781 ggaggaagaa aagaacgata gaggcaggaa cgacttccgc tgggtcgacg aaaacttcaa
      841 gatggcccgg ctctacgtca ttcccgtcga aaaggatgga aacggtaaac gcgaggcgcg
      901 caaattaaca actgggaatt atcacgtcgg cgagttcgac tggtcggccg acggctcgcg
      961 tatcgccttc agtcacagca agacgccgac cgcaaacgat tggcccactg ccgatgtttc
     1021 ggtcgtcgaa gttgcaaatg caaacgtgtc ggtgctggcc aacacgaccg ccgcggaaga
     1081 ctcgccggtt tactcgcccg acggaaagtt tctcgcgatc acggccagcg acattccgcc
     1141 gcgttgggcg caagccggca tggttcagat ctattcgaca accggcggtc agccgaagag
     1201 tgtgatggct tcgtatgatg gtcagccggg aatcatcggc tggtccgccg acagcaagcg
     1261 catttacttc tcggaagcga aaggcacggg cacgcagatt tacgtcgtgg acgttgccgc
     1321 gaatcgcatt gacgagatca aaagcactcc cgcggtgttg agcatgttca gcctcaaccg
     1381 cgcgggcacg acgatgggct ttgttcgtca aacttccgac acgcctgccg acgtcttcgt
     1441 gtcaccactg accgagttcg cgccggtgca gatcacacgc gcgaatgcgg agctgaaact
     1501 gccggcgatc ggccgcaccg aagtgatccg ttggaagtcg aaagatggaa gagagattga
     1561 aggactgttg acgtacccgg tcggttatga agccgggcag cgcgtgcctt tgctcctgaa
     1621 catccacggt ggaccagcgg gcgtgtttca acaaacattt ctcggcggcc gcggcatata
     1681 tccgttggcg acgcttgcgg cgcgcggtta tgcgattctg cgtccgaacc cgcgcggttc
     1741 gagcggttac ggcgttgagt ttcgacgcgc aaacataaaa gactggggct tcggcgatta
     1801 ccacgacgtg atgaccggtg ttgataaagt catcgagatg ggtgtggccg atccggagcg
     1861 ccttggtgtc gcgggttgga gttacggcgg ctacctgacg tcgtggatcg tgacgcagac
     1921 gaaccgtttc aaagccgcgt ccgccggtgc gccggtaata aacctgatga gcttcaacgg
     1981 caccgccgac attccggggt tcattccgga ttacctcggc gggcagtttt gggaaattca
     2041 ggagctctat caaaagcact cgccgctgtt caacgtgaag agcgtgacga cgccgaccat
     2101 gattcaacac ggcgaggcgg acgttcgcgt gccgatctcg caagggtacg agttttacaa
     2161 cgcgctgaaa atgaaaggcg tgccgacgcg catgctcgtg ttgccgcgtc agccgcatgg
     2221 tccgaatgag ccgaagatgc aactggcggc gatgaacgca aacctcgaat ggtttgacaa
     2281 gtacatcggc cctaagtcgc agacgtcgcg caactgatct gtgtctgagt cgatcacgct
     2341 cgacgaactg cgccgctaca cggtcgcgcg gaatttctta aaacctacca atctaaagac
     2401 ggcgttacac cggatgggat tcgtgcaagc ggatcccatt cgcgcgccgg ctcgcgcgca
     2461 ggacctcatc ctccgccagc gagtaaacaa ttaccgcgcc ggtgaactcg agcggcgtta
     2521 tgcgtcgctc gacgtcgaag aagatttctt cattaactac ggctacgttt cgcgtgccgt
     2581 ttattcgttg atgcatccgc gtgtgcagag gccgtttgcg cgcgttgata cgccgctgcc
     2641 gccgggcgac aggaagcgag cgcaaaaggt gttggagttt gtgcgtgagc gagggtcggt
     2701 tcatccgcgc gaagtggacg agtacttcgc gcacggaaag gtgacgaact attggggcgg
     2761 ttcgtcgaat gcgacgacgc acctgatgga cgcgatgcat taccgcggca tgttgcgggt
     2821 gttgcgtcgc gagaaaggaa ttcggattta cgcgccgctt gagcacgagc gcgtgccgat
     2881 cagtgcggct gaacggcggg cgcgaatcga tgcgcttgtg gatgtggtgg tgggaatcta
     2941 tgggccgtta ccggcgtcga gtttgaccta ttatgtgcga aggttgcgct atgcggtgcc
     3001 ccagtgggag agggatttaa cggatgcgct aaaacgcgcg aagaaacgat tgcggcacgc
     3061 gaggacggat cgcgactggt attttccggc ggatgaagat ccggtgcggg catcgcagga
     3121 agacgttgtg cggttgctgg cgccgttcga tcctgttgtt cacgatcgcg cgcgtttcca
     3181 gttgttgtgg aactgggaat atcgcttcga agcttacacg ccggtggcga aacgaaagct
     3241 cggttactac gcgatgccgc tgctctggcg cgaccgcgtt atcggctggg ccaacgcttc
     3301 ggtgaaggat ggcgcacgtc agtgtgacat tggttatgta gagtcgccgc cacgcgaacc
     3361 ggtttttaga cgcgaattgg aagaagagtt ggagcggttg cgcaggtttt tgggcttgga
     3421 atgaagatcc acatcgggac atcgggctgg cactacaaac actggcttga cgatgtgttc
     3481 tacccttccg gaaccaaacc cgcgcagatg tttgatttct acgcgcggca cttcgatacg
     3541 gtcgagatca ataacagttt ctatcacctg ccttcagcga agactttcga caactggcgc
     3601 gactcctcac cgccgaagtt tctgtttgcc gtcaaagcca gccgcttcat cacgcacatg
     3661 aagaagctaa aggatccgaa gccctcgtcg gagaagttct tcgacgtcgc ggatcggctt
     3721 gggaagaagc tcgggccggt gctgtttcaa ctcccgccgc gctggaaagt taacactgaa
     3781 agattcgcgg agtttctcga gtcgcttccg ggcgggcaca agtacgtttt tgagtttcgc
     3841 gatgagacgt ggtttgtgcc ggaagtctat gcgttgttgc ggcggcacaa agcggcgttt
     3901 tgcattcacg acttcgcgga tatgaaagtg ccgcaggaga tcacggcgcc gtttagttac
     3961 attcgttttc atggtccgac gagcgcgaag tacttcggtt cgtattcgac ggatgaactg
     4021 cgcgtgtggg cagagcggat tcgtgattgg cgtcggcagc taaaagcgat ctacatctac
     4081 ttcaacaacg atcccggcgg cgaagctgtg aagaatggtc tcgagctgaa gcgaatggtc
     4141 gcaggattgc aatgagaacc cgaagcccga tgcgtgatgt atcggaaact tacaacgaac
     4201 aaggggagtg atatgagttc caatgaaatg aatcggccgc tagcgatggt caccggcgct
     4261 tcgaccggca tcggttacga gctcgcgatc ttttgcgcga aagaagggtt tgatttgctg
     4321 gtcgtggctg acg
//
LOCUS       DASWTX010000383         1829 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_331450, whole genome shotgun sequence.
ACCESSION   DASWTX010000383 DASWTX010000000
VERSION     DASWTX010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1829)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1829)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1829
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331450"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1805)
                     /locus_tag="VGD38_05935"
     CDS             complement(<1..1805)
                     /locus_tag="VGD38_05935"
                     /inference="COORDINATES: protein motif:HMM:TIGR01733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEY0727592.1"
                     /translation="MLKRVRDLCLDAYTHQELPFERVVEELGPDRDSNHAPLFQVLFA
                     LQNTPTHELSLANLKLTALEPENPAARFDLALEISETNTGELDCRLTYDADLFAATTI
                     ARIANYFVNVLSAVTADPQQPISTVNFLRDEERRQLLFDWNRTQVDFPNTRCIHELFE
                     QQASLTPEALAVVSDEESLSYRELNERANQWAHRLRNLGAGPEKLVGITAERSPEMLV
                     GILAILKSGAAYVPLSPDTPPERLKQMLNDAGIKLLVTQQELNEQLHNSENRQNPETI
                     TSAGNLAYLIYTSGSTGRPKAVEVTHRNLVHSTTARFAYYDEPVRGFMLVSPFFFDSS
                     VAGIFWTLCQGGKLVLPPKNFERDFTAFAALLEAEQVSHLLCLPIVHSLLLRQASNTP
                     MKNLRTVIVAGEPCTPELPNRHSELLPHASLFNEYGPTEGTVWATVYECTPQERATVP
                     IGRPVPNVQTYVLDESLQPAPVGVVGELYIGGEGVARGYRNRAGATAERFVPHPFART
                     DGARLYATGDLVRYLPNGNLEFLGRRDQQVKVRGFRIELGEIEAVLSTHPSVREAVVV
                     KHESRTVAYLTAVGPTEDLHKFLQQRLPEYMLPSQ"
BASE COUNT          362 a          470 c          585 g          412 t
ORIGIN      
        1 aactgcgacg gcagcatgta ttcgggaagt cgctgctgta gaaatttgtg cagatcttca
       61 gttggtccaa cggcggtgag ataagcaacc gtgcggcttt cgtgtttgac gacgacggcc
      121 tcgcgtaccg agggatgcgt gctcaatacc gcttcgatct cgccgagctc gatcctgaac
      181 ccgcgtactt tgacttgctg atcgcgccgg ccgagaaact ccaggttgcc gttcggcaga
      241 tagcgcacga gatcgcctgt tgcgtacaag cgcgcgccgt cagttcgcgc aaacggatgt
      301 ggcacgaaac gttcggccgt ggcgcccgcg cggttgcggt agccacgcgc aacgccttcg
      361 ccgccgatgt agagttcgcc gacaacgccg accggtgccg gctggagaga ttcgtcgagc
      421 acgtacgttt gcacgttcgg aacgggacgt ccgatcggca ctgtcgcacg ctcctgtggc
      481 gtgcactcgt aaaccgtcgc ccagactgtg ccttcggttg gtccatactc gttgaacaaa
      541 gaagcgtgcg gcaggagttc ggagtgacgg ttcggtagtt cgggcgtgca cggctcgccg
      601 gccacgatca ccgtgcgaag gttcttcatc ggcgtgttcg aggcttggcg caacagcagt
      661 gaatggacta tcggcaggca caagaggtgt gagacctgtt ctgcttcgag caaagccgcg
      721 aacgccgtga agtcgcgttc gaaatttttc ggcggtaaca ccagcttccc gccctgacac
      781 aacgtccaga agatccccgc cacggaagag tcgaagaaga acggtgagac tagcatgaag
      841 ccacgcaccg gttcgtcgta gtaagcgaaa cgtgcggtgg ttgaatgaac gagattgcga
      901 tgagtgactt cgacggcttt ggggcggcct gtcgagcccg aggtgtagat caggtaagcg
      961 agattgcctg cgctggtgat cgtttcaggg ttttgtcggt tctcggaatt atgcagttgt
     1021 tcgttcaact cctgttgcgt gacgagcagc tttattcccg cgtcgttgag catctgcttg
     1081 agacgttcag gtggagtgtc tggcgacagc ggaacataag cggcgccgga tttcagtatc
     1141 gcgagtatgc cgacgagcat ttcaggcgaa cgttcggctg tgatgccgac gagtttttcc
     1201 ggcccggcgc cgagattgcg caaacgatgc gcccactgat ttgcgcgctc gttcagttcg
     1261 cgatacgaga gggattcttc gtcggaaacg accgcgagtg cttcgggtgt tagcgatgct
     1321 tgttgttcga atagttcgtg aatgcaacga gtgtttggga agtcgacttg ggtgcggttc
     1381 cagtcaaaca acaactgccg gcgctcttcg tcgcggagga agttgacggt tgagattggt
     1441 tgctgcggat cggcggtgac tgccgaaaga acatttacga agtagttggc gatacgggcg
     1501 atcgtcgtgg ccgcaaatag atcggcatcg tatgtcaggc ggcaatcaag ttcgccggtg
     1561 tttgtttcag agatttcgag cgccagatcg aaacgcgcgg ccgggttttc aggttccagc
     1621 gcagtcagtt ttagattggc gagagatagc tcgtgggttg gcgtgttctg aagagcgaag
     1681 agcacctgaa acagcggtgc gtgatttgag tcgcggtccg gtcccaactc ctccactaca
     1741 cgctcgaacg gaagttcctg atgcgtgtac gcgtccagac ataagtcgcg tactcgtttg
     1801 agcactgtga tgaagctttg ttcgccgct
//
LOCUS       DASWTX010000384         1697 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_287622, whole genome shotgun sequence.
ACCESSION   DASWTX010000384 DASWTX010000000
VERSION     DASWTX010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1697
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287622"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..680)
                     /locus_tag="VGD38_05940"
     CDS             complement(<1..680)
                     /locus_tag="VGD38_05940"
                     /inference="COORDINATES: protein motif:HMM:NF012373.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="complex I subunit 1 family protein"
                     /protein_id="HEY0727593.1"
                     /translation="MLLLGPINILNDLLLRFFSQETINYFVWPLIQIGLVVTLVALWV
                     AYATYLERKISAFIQARLGPMRVGPWGLLQPIADGLKLLVKEDFIPEKADRWIFFFAP
                     YIAVASAFIVFSVVPFGPDWAVIADVNIGLLLVLAVSSVGVLALILAGWSSNSKYALL
                     GGLRSSAQMVSYEVAMGLSLIGALMFARTLSLSGIVAAQGSDSIWFIAYQPAGFLLFL
                     ISGIAENNR"
     gene            complement(687..>1697)
                     /locus_tag="VGD38_05945"
     CDS             complement(687..>1697)
                     /locus_tag="VGD38_05945"
                     /inference="COORDINATES: protein motif:HMM:NF012566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HEY0727594.1"
                     /translation="GETVIDLDCDIGYLHRGREKIAENRMYTMIAPYWDRLDYIAAVS
                     NGLVWVETVEQMMGLPVPPRAHYLRTILTELNRIASHLLWLATHALDIGAITVLLWAL
                     REREEILKIFERQFGARLTCHAWRVGGMPNDAYDEFEHDVRQFANNFPKRIDEYETVL
                     SENRIWLSRTVGIGVISGPEAIAIGLSGPALRGSGVAWDVRKSRPYAAYADMDFDIPL
                     GENGDTYDRYLVRLEEMRQSRRIIVQALDNLPDGPVNAKLPKVVKCPPGDYYHSIEGP
                     KGEIGCYLVSDGTAQPYRVRVRPPSFVNLQALKQMCVGHLVADVVAIIGTLDIVLGEI
                     DR"
BASE COUNT          417 a          541 c          446 g          293 t
ORIGIN      
        1 cgattgttct cggcgatgcc gctgatcaaa aagagcaaaa acccggccgg ttgataagcg
       61 atgaaccaga tcgagtcgga accctgcgca gcgacaatgc ccgagagcga caacgtgcgc
      121 gcaaacatca acgcgccgat cagcgagagc cccatcgcga cttcgtacga caccatctgc
      181 gcgctcgaac gcaatccacc cagcaatgcg tacttcgaat tcgacgacca gcccgcgagt
      241 atcaacgcca acacgccgac actcgaaacc gccaacacca gcagcagtcc gatattgacg
      301 tcagcaatca ccgcccaatc cggtccaaac ggaaccacag aaaacacgat gaacgcagaa
      361 gccaccgcga tgtacggcgc gaagaagaag atccaccgat ccgctttctc gggaatgaag
      421 tcttctttaa ccagcagctt gagaccgtca gctatcggct gcaacagtcc ccatggccca
      481 acccgcatcg gcccgagacg cgcctggata aacgccgaaa tcttgcgctc cagatacgtc
      541 gcatacgcaa cccacagcgc aacgagcgta acgacgaggc cgatctgaat cagcggccaa
      601 acgaagtagt tgatcgtttc ctggctgaag aatctcagca aaaggtcgtt gaggatgttt
      661 atcggaccaa gcaacaacat gcgggtttag cgatcgatct ctcctaatac aatgtcgagc
      721 gtgccaatga tggcgacgac gtcagccacg agatgaccga cgcacatctg tttcagagcc
      781 tgcagattca cgaatgacgg cggacgaacg cgcacgcgat acggctgcgc cgtgccgtca
      841 gaaactagat aacaaccgat ctcgcctttc ggtccttcga tcgagtggta gtaatcaccc
      901 ggcggacact tcacgacctt cggcagcttc gcgttcaccg gcccatccgg caggttgtcc
      961 aacgcctgca cgatgatccg gcgcgactgc cgcatctctt ccaatcgcac gaggtagcga
     1021 tcatacgtgt cgccgttctc gccaagcgga atatcaaagt ccatgtcggc atacgccgcg
     1081 tacggccgcg acttgcgcac gtcccaggcg acacccgaac cacgcaacgc cggaccggac
     1141 aaaccgatcg cgatcgcttc cggacccgaa atgacgccga tgccaaccgt acggctcaac
     1201 cagatgcggt tctcggaaag caccgtctca tactcgtcga tacgtttcgg aaagttgttc
     1261 gcaaactgcc ggacgtcgtg ttcaaactcg tcgtaagcgt cgttcggcat accgccgacg
     1321 cgccacgcgt gacacgtcag acgcgcgcca aactgccgtt cgaaaatctt caaaatctct
     1381 tcgcgttcgc gcagcgccca caacagaacg gtgatggcgc cgatgtcgag cgcgtgcgtc
     1441 gcgagccaga gcaagtgcga cgcgatgcga ttgagttcgg tcagaatcgt gcgcaggtag
     1501 tgtgcgcgcg gcggaacagg aagccccatc atctgctcga ctgtttccac ccacacgaga
     1561 ccgtttgaaa ccgcggcgat gtaatcgaga cgatcccagt acggcgcgat catggtgtac
     1621 atgcggttct cggcaatctt ttccctgccg cgatgcaggt aaccgatgtc gcagtcgaga
     1681 tcgatcacgg tctcgcc
//
LOCUS       DASWTX010000385         2891 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_49989, whole genome shotgun sequence.
ACCESSION   DASWTX010000385 DASWTX010000000
VERSION     DASWTX010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2891)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2891
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49989"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(492..1784)
                     /locus_tag="VGD38_05950"
     CDS             complement(492..1784)
                     /locus_tag="VGD38_05950"
                     /EC_number="1.4.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HEY0727595.1"
                     /translation="MASMYSTTYVDDIREIKEENPFESMMSRFDRAAQLLNLDPDLYA
                     VLRVPNRELKVYIPTRMDSGRIQVFEGYRVQHNFARGPAKGGIRYAPDVSLDEVRALA
                     AWMTWKCAVVNVPFGGAKGGIICDPQQMSTGELERMTRRYAAELLDFIGPEKDVPAPD
                     MNTNEQTMAWIMDTYSMHARHTVTAVVTGKPIDLGGSSGRREATGRGILFVVNEAIKR
                     FKMRPSETRVVVQGSGNVGGIGAQLMHESGYKVVAISDIHGGIYNPKGIDIPEALKYL
                     RNTRSFEGYEGVEFVNNQELLELDCDVLVPAATENQITSQNADNLKCKVLAEGANGPT
                     TASADEILHQKGIFVVPDILANAGGVTVSYFEWVQDRMGYFWPEDVVNERLEHKMVAS
                     FNDLCRYADAHSVDTRTAAYMLAIDRVAYDTRMRGIYA"
     gene            complement(1813..2679)
                     /gene="larE"
                     /locus_tag="VGD38_05955"
     CDS             complement(1813..2679)
                     /gene="larE"
                     /locus_tag="VGD38_05955"
                     /inference="COORDINATES: protein motif:HMM:TIGR00268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent sacrificial sulfur transferase
                     LarE"
                     /protein_id="HEY0727596.1"
                     /translation="MQNLLHKDESHQCATLKEQKLREIFRALGSVIVAYSGGVDSSYV
                     AYVANAELGPRAICITGESASLPSYQRAEMERVVNTFGFHHEIIQTEELENPSYRANN
                     ADRCYFCKDELYGKLEAIAASRGIECIVDGSTTDDVDDFRPGRQAAKQHAVRSPLIEV
                     GMSKSEVRELSQRAGLPTWDKPASPCLSSRIAYGTTVTIERLSKVDRGEAIMREFGFK
                     EFRVRHHDTLVRLEISPAEMDRVLKREVVEQLAARFRELGFKYVTLDLQGFRSGSMNE
                     VLPISIKRGDSR"
BASE COUNT          614 a          870 c          723 g          684 t
ORIGIN      
        1 agtctgtgct gatactgcgg cacacagcac caacgatacg agcgcagcta aaagcgccct
       61 agttgcgagt ctcatcgcat tcctcctgcg aaatgagtaa taagaattcg atgtaatagt
      121 gccgccgtac caacaagtac gaaaacacct tgccgcaccg gaggccccaa ctacactgtc
      181 aaaaacttta accgcttgga ccactaggtc cagcggcgac gctcggactg cgatgcaaac
      241 agaatacttc ggcctttctc gcagtactcc atcttcacta atacgctata ccgagtgact
      301 actgactggt tcacttctta tagaaaatga actacccctt gtcaatgact tcgtccctca
      361 aacctgtcgc gcaaatattg agaaatctta acgctggtcc gagtcgtaaa gcctgccaga
      421 ccatactcta ccttaaatcg gaaatcaagc ctttttcact atttagcgca catcagttta
      481 tgttttttcg gtcacgcata gatgcctctc atacgtgtgt cataggccac gcggtctatc
      541 gctaacatgt acgctgcggt cctcgtgtcg accgagtgtg catcggcata acgacacaga
      601 tcattgaagc tcgcgaccat cttgtgctcg agtctttcgt tcaccacatc ctcgggccag
      661 aagtacccca tgcggtcctg aacccactcg aagtaagaca ctgtcacacc acccgcgttc
      721 gcgaggatgt ccgggaccac gaagatgcct ttttggtgaa gtatttcatc tgctgaagcc
      781 gttgtcggtc cattcgcgcc ctcggcgagc actttgcact tcaggttgtc ggcgttctgc
      841 gatgtgatct ggttctcagt cgcggccggc accagcacgt cgcaatcgag ctccagcaac
      901 tcctgattgt tgacaaactc cacaccctca tagccctcga acgagcgcgt gttccgcaag
      961 tacttcagtg cttcggggat gtcgatgcct ttcgggttgt aaatgccgcc gtgaatgtcc
     1021 gatatcgcta caaccttgta gcccgactcg tgcatgagtt gcgcgccgat gccgcccaca
     1081 tttcctgagc cttgaaccac tacacgcgtc tcgctcggcc gcatcttgaa tcgtttgatc
     1141 gcttcgttga caacaaacag tatgccgcgg ccggtcgcct cacgccgccc cgacgatcca
     1201 ccaagatcaa ttggtttgcc ggtcacgacc gccgtcactg tgtggcgcgc gtgcatcgag
     1261 taggtgtcca tgatccacgc catggtctgc tcgtttgtgt tcatgtccgg agccggcacg
     1321 tccttttccg gtccgatgaa gtcgagcagc tcggctgcgt agcgacgagt catgcgctcg
     1381 agctcgcccg tagacatctg ttgcgggtcg caaatgattc cgcctttcgc tccgccaaac
     1441 ggcacgttca cgaccgcgca cttccaggtc atccacgccg cgagcgcgcg cacttcgtcg
     1501 agactgacgt caggcgcgta acgaatgccg ccctttgctg gtccacgcgc gaagttgtgc
     1561 tgcacgcgat aaccttcgaa gacctgaatg cgtcccgagt ccatgcgcgt cgggatgtag
     1621 accttcaact cacggttggg gactctcaac accgcgtaaa gatcgggatc gaggttcaat
     1681 agctgcgccg cgcgatcgaa gcgcgacatc atcgactcaa acgggttctc ttcttttatc
     1741 tcgcgaatat cgtctacgta ggttgtgcta tacatgctgg ccataacgcc ctctcgaaat
     1801 tgtgaagtct atttatctcg aatcaccgcg cttgatacta atcggcaaca cttcgttcat
     1861 cgaaccactg cgaaaacctt gcaggtccaa cgtgacatac ttgaacccga gctcgcgaaa
     1921 acgcgccgcg agttgctcga ctacttctct cttcaacacg cggtccatct cggccggaga
     1981 aatctcgagc cgtaccagcg tgtcgtgatg tctcactctg aactctttaa aaccaaactc
     2041 tctcatgatc gcttcgccgc gatcgacctt gctcaatcgc tcgatcgtga cggtggttcc
     2101 atacgcgata cgcgacgaga gacacgggct ggcgggtttg tcccacgtcg gcaatcccgc
     2161 gcgctggctc aactcgcgca cttcgctctt gctcatgccg acttcgatca aaggactacg
     2221 cacggcgtgt tgctttgcag cctggcgtcc gggccgaaag tcgtcaacgt cgtcggtagt
     2281 tgaaccgtcg acgatgcact cgataccgcg gctcgccgcg atcgcttcga gtttgccgta
     2341 tagttcgtcc ttgcagaagt aacaccggtc cgcgttgttt gcgcgatagc tcgggttttc
     2401 caactcttcg gtctgaatta tctcgtggtg aaaaccgaac gtgttgacga cgcgctccat
     2461 ttcagcgcgc tggtacgaag gcaagctcgc ggactcacca gtgatgcaga tcgcccgtgg
     2521 tccgagttcg gcattcgcga cataagcgac gtaactgctg tcgacgccac ctgagtaagc
     2581 gacgatcacc gaaccgagcg cacgaaaaat ctctcgcagc ttttgttctt tgagagttgc
     2641 acactggtga ctctcgtctt tgtgcaggag attttgcatt gagtggccgc atgttagctc
     2701 atgcgcgaac ggcaaggcaa acaacaacgc cgaaggcgtt cgccagttcg agcccatcta
     2761 tgaagcggtc tccggtgtca agagaatttt aggcacacgc tgaccgcgac gccgcggcgc
     2821 ctgcgtttgc tctattgata aagctttgct ctgtgacatg agactgctaa gtaaatttac
     2881 cgccgtttgc g
//
LOCUS       DASWTX010000386         1913 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_199187, whole genome shotgun sequence.
ACCESSION   DASWTX010000386 DASWTX010000000
VERSION     DASWTX010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1913
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199187"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..309
                     /locus_tag="VGD38_05960"
     CDS             <1..309
                     /locus_tag="VGD38_05960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEY0727597.1"
                     /translation="YFALEGTDDLLETIEKVKARPNPNLELLGVLVTLHDKRTTLARE
                     VHEQIKNVFGPKLFDTVITKSVRLEESPAYKESIFSFAPNSSGAIEYGKLCEEVISRV
                     "
     gene            302..1153
                     /locus_tag="VGD38_05965"
     CDS             302..1153
                     /locus_tag="VGD38_05965"
                     /inference="COORDINATES: protein motif:HMM:TIGR00180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEY0727598.1"
                     /translation="MSKRGLPTGLQMRHDAHYVEELSQHRPQQVGRMIPVDKLDPNPE
                     QPRTEFGDLTELTASIAEKGVLEPLLVKPNRLTGRWMIIAGERRWRSAQRAGLKEVPC
                     VEMEVDDGTVAEIALIENMQRKDLTVWEEADGLLALCERFGYTHDDVARKVGKSRTTV
                     SEALAIAKIPDDVRQVCRDAEVSAKSVLLQIVRQPDDDSMRRFAKEIATKGLKREDAR
                     EVRRQEMGPRVVPDSKPYTFKYQSPEKDFNVEVRFKAPHVSDAEVALILRAVADEIDE
                     EPQTIAD"
     gene            complement(1179..1730)
                     /locus_tag="VGD38_05970"
     CDS             complement(1179..1730)
                     /locus_tag="VGD38_05970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727599.1"
                     /translation="MAIRIENQYEGPLPKGTLQQIEDAFESLPREHTRGIERIRLVPY
                     ITDPRIRGQFQATELPGLYHPRQGPKGAWLELAVNVLLTPDKPFHKRIIPRMSFKSNI
                     VALVFSLIGQHYHFTLKHSLKKTQLEPAVRQYTEKQLKAWNERKHSFRARLFKPLQPT
                     FERWAKSLQKRAAAEKKKSLASK"
BASE COUNT          405 a          479 c          614 g          415 t
ORIGIN      
        1 tattttgcgc ttgaaggaac agacgatctg ctcgagacga tcgagaaagt caaagcgcgt
       61 ccgaatccga atctcgaact gctcggcgtg ctggtgacgt tgcacgacaa acgcacgacg
      121 ctcgcgcgcg aagttcacga acagatcaaa aacgtgtttg gtccgaagtt gttcgatacg
      181 gtgatcacga agagcgtcag gctcgaagag tcgccggcgt acaaagaatc gatcttcagt
      241 tttgcgccta attcatccgg cgcaattgag tacggaaaac tttgtgaaga ggtaatcagc
      301 cgtgtctaaa agaggactgc cgacgggact gcaaatgcga cacgacgcgc attatgtcga
      361 ggagttgtcg caacatcggc cgcagcaagt gggtcgcatg attcctgtgg acaaactcga
      421 tccgaatccg gagcagccgc gcacggagtt tggcgacctg acggagttga cggcctcgat
      481 tgccgagaag ggcgtgttgg agccgttgct cgtgaagccg aaccggttga ctgggcggtg
      541 gatgatcatc gcgggtgaac ggcgttggcg atcggcgcag cgtgcggggt tgaaggaagt
      601 gccgtgcgtg gagatggaag tcgacgacgg cacggtcgcg gagatcgcgc tgatcgaaaa
      661 catgcagcgc aaggatctga cggtttggga agaagcggac ggattgctcg cgctgtgcga
      721 aaggtttggt tacacgcacg acgatgtggc gcgtaaggtt ggcaagagcc gcacgacggt
      781 ttcggaggct ttagccatcg caaaaattcc ggacgacgtg cgccaggttt gtcgtgacgc
      841 tgaagtctct gccaagtctg tcttactgca gatcgtgcgg cagccggatg atgattcaat
      901 gcggcggttt gcgaaggaga ttgcgacgaa ggggttgaag cgcgaggatg cgcgcgaagt
      961 gcggcggcag gagatggggc cgcgcgtcgt tccggattca aagccgtaca cgttcaagta
     1021 ccagtcgccg gaaaaggatt ttaatgttga agtgcgtttc aaggcgccgc acgtgagcga
     1081 cgcggaagtg gcgctcattc tcagagccgt ggctgacgag attgatgagg agccacagac
     1141 aatcgcggat taacacggat ctgtgttttt ccgtggtcct acttcgaagc caggctcttc
     1201 ttcttttccg ccgcagcgcg cttttgcaac gacttcgccc accgttcgaa cgtcggttgc
     1261 aatggtttga agagacgagc gcggaagctg tgcttgcgtt cgttccacgc ttttaattgc
     1321 ttctccgtgt actgccgcac cgccggctcg agctgagttt tcttgagtga atgcttgagc
     1381 gtgaagtggt agtgctgccc gatcagcgaa aacaccagcg ccacgatatt gctcttgaac
     1441 gacatccgcg gaatgatccg tttgtgaaac ggcttgtccg gcgtcagcag cacgttgact
     1501 gcgagctcga gccaggcgcc tttcgggcct tggcgcggat gatagagccc gggcagttcg
     1561 gtggcctgaa attggccgcg aatacgcgga tcggtgatat atggcacgag cctgatgcgt
     1621 tcgatgccgc gtgtgtgttc tctgggaaga ctttcgaagg cgtcctcgat ctgttgcagc
     1681 gtgcctttcg gcaggggacc ctcgtactgg ttctcaatgc gtatcgccat agaagccagt
     1741 cactttaggg taagggactt aacgggtcaa gcggacccca agtcctgagt cagactgact
     1801 ccgcgtccgt gaccgcgccg aggctggcgc ttgagacgag cttggagtat ttcgccagga
     1861 ctcccgttag acgccgcgat cctgttcttg aaatccagct ttcaaatcgg ctt
//
LOCUS       DASWTX010000387         2500 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_28356, whole genome shotgun sequence.
ACCESSION   DASWTX010000387 DASWTX010000000
VERSION     DASWTX010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2500
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28356"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1035)
                     /locus_tag="VGD38_05975"
     CDS             complement(<1..1035)
                     /locus_tag="VGD38_05975"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEY0727600.1"
                     /translation="MQSSATMAAMQAAEALRAAGVNVCDFGAGEPDFDTPDNIKQAAA
                     AAMQAGRTKYTSAGGIREIQRAIIEFYKREFGTEYQPSEVMATAGGKQAIFNAVVTLI
                     NPGDEVLIPKPYWVTFPEVVVFAGGTPVFIETEETDFVLTPEQVEKAITPRTKLIILN
                     SPSNPSGRVLPPNDFRRIMEITAERGVYVVSDECYLRFVYPPAEVFSAATLPEELRSR
                     LCIAGSFSKTYAMTGWRVGYALAPTPWTKAMLKVQGHSTSNTNSIAQWAAVEALTGPQ
                     ESVGIMLAEYTRRREWLLKALCDIPGVSCAQPEGAFYAFPNVRALLKIGIKTSGEFAQ
                     RLLEEEHTVVT"
     gene            complement(1086..1580)
                     /gene="coaD"
                     /locus_tag="VGD38_05980"
     CDS             complement(1086..1580)
                     /gene="coaD"
                     /locus_tag="VGD38_05980"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEY0727601.1"
                     /translation="MRRAIYPGSFDPVTNGHLDIIERGCKLFDEIIISILVNPEKQPF
                     FTVAERQEMLTDVLRHIDHKHCKLRVDSFSGLLVEYAVAQQADVIVRGIRAISDYEYE
                     LQMALMNRRLEPGIETVFMMPAEIYSYVSSRLVKEVFHLGGTIEGLVPPLVEQRMKEK
                     IAQT"
     gene            complement(1625..1933)
                     /locus_tag="VGD38_05985"
     CDS             complement(1625..1933)
                     /locus_tag="VGD38_05985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727602.1"
                     /translation="MISIAPEDFTRDRMTQLAKQLNQDFADRQKVAVSIFDNETVAQN
                     VVPAGSHYVDFKAAERGVYHLDRAKGSEYIHFSSKPGRPSNEIKINLGRTRPKRKKTT
                     "
     gene            complement(2098..>2500)
                     /locus_tag="VGD38_05990"
     CDS             complement(2098..>2500)
                     /locus_tag="VGD38_05990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727603.1"
                     /translation="KFLREKLGLSSTRVARALKGIRPFDGTTSTLSLKDAGLLPLSGK
                     GSSTSVASLFKDPRLSAARAAYATPDDRGATLRDIYFGYIFRPQTILHETLHVFTGMN
                     DERLAAALGVKLEGVETGGISEALKNAGCGF"
BASE COUNT          515 a          679 c          743 g          563 t
ORIGIN      
        1 ggtgacgaca gtgtgctcct cttcgagcag ccgctgcgca aattcgccgg aagtttttat
       61 tccgatcttc aaaagtgcac gaacattcgg gaaggcgtag aacgctcctt cgggttgcgc
      121 gcacgagact ccgggaatgt cgcacaaagc tttcaacagc cactcgcggc ggcgcgtgta
      181 ctcggcaagc atgattccga cggactcctg cgggccggtc agcgcttcaa ccgcggccca
      241 ctgcgcaatc gaattcgtgt tcgaagtcga gtggccctgc accttcagca ttgctttggt
      301 ccatggagtc ggtgcgagtg cgtagccgac gcgccagccc gtcatcgcat acgtcttcga
      361 gaacgaaccc gcgatgcaca agcgcgacct gagttcctcc ggcagagtcg cggcactgaa
      421 cacttccgct ggcggataga cgaagcgcag gtagcattcg tcggaaacga cgtagacgcc
      481 gcgctcggcg gttatttcca tgatgcggcg gaagtcattc ggcggcagca cgcgtcccga
      541 aggattcgaa ggcgaattga gaatgatgag cttcgtgcgc ggcgtgatcg ctttttcaac
      601 ctgctcgggc gtgagcacaa aatccgtctc ttcggtttcg ataaagaccg gagtgccgcc
      661 tgcgaagacc acgacttcgg gaaacgtgac ccagtaaggc ttcggaatca aaacttcgtc
      721 accgggattg atcagcgtca cgactgcgtt gaagatcgcc tgcttgccgc cggccgtcgc
      781 catcacttcc gacggttgat actcagtccc aaactcccgc ttgtagaact cgatgatggc
      841 gcgctggatt tcgcgaatgc cgccggccga cgtgtacttc gtgcgtccgg cctgcatcgc
      901 cgcggccgcg gcctgcttga tgttgtcggg cgtgtcgaag tcgggctcgc ccgcgccaaa
      961 gtcgcagacg ttcacacctg ccgcacgcaa agcttcggct gcctgcatcg cagccatcgt
     1021 ggctgacgac tgcatgcgat taacattttc agaaacaggg aatgatgaca tagcgggaaa
     1081 cgttttcatg tttgggctat cttttctttc atccgttgtt cgacaagagg cggcacgaga
     1141 ccttcgatcg tgccacccaa atgaaacact tccttcacga gacgcgagct gacgtaagag
     1201 taaatctcgg ccggcatcat gaacaccgtc tcgatgcccg gctcgagccg gcgattcatc
     1261 agcgccatct gcagttcgta ctcgtagtcg gagatcgccc gtatgccacg cacgatcacg
     1321 tcggcttgtt gggcgacggc gtattccacg agcagtccac taaaagagtc aacgcgtaat
     1381 ttgcagtgct tgtggtcgat gtggcgcaga acgtccgtga gcatctcctg gcgctcggcg
     1441 acggtaaaga acggttgttt ctcgggattg acgagaatgc taatgatgat ctcgtcgaag
     1501 agtttgcagc cgcgctcgat gatgtccagg tggccgttgg taacgggatc aaacgaaccg
     1561 gggtagatgg cgcgtcgcat ttacaggcat gttaaggggt gttgggggaa ttggtaaata
     1621 ggaatcaggt agttttcttg cgtttgggtc gagttcgacc gaggttgatt ttgatttcgt
     1681 tcgaagggcg gccgggtttg ctggagaagt gaatgtattc cgagcctttg gcgcggtcga
     1741 gatgatagac gccgcgttcg gctgctttga agtcgacgta gtgggagcct gcgggcacga
     1801 cgttttgcgc gacagtctcg ttgtcgaaga ttgagaccgc gaccttttgg cgatcggcaa
     1861 agtcctggtt gagctgcttt gccaactgcg tcattcggtc gcgggtgaaa tcttcgggtg
     1921 caatgcttat caccaggaat attccgtcgg attctttgtt accgtggaga gtccgggcga
     1981 ttttgtaact cacggggttt gcctgcgcgg cggctgaagc agttgctcca gccgccaaaa
     2041 gcagggaaat aagtgttacg ctgacgagaa gtccagttcg catgtgagta gtctacatca
     2101 gaagccgcaa ccggcattct tcagagcctc tgaaatgccg cctgtttcga ctccttcgag
     2161 tttaacaccc aaggccgccg cgagcctctc atcattcatt ccggtaaaga cgtgaagcgt
     2221 ctcgtgcaga atggtctgag gcctaaagat gtagccaaag tatatgtcac gcagcgtcgc
     2281 tccccgatcg tccggagtgg cgtaagctgc gcgggctgcg ctaagcctgg ggtctttgaa
     2341 cagagaagcg acgctcgtcg aagatccctt cccactgagc ggcagcaagc cggcatcttt
     2401 gagactcaga gtcgaggtcg taccgtcgaa tggccgaata cctttgagtg ctctcgctac
     2461 gcgggtactg ctcaacccaa gcttttctcg aaggaactta
//
LOCUS       DASWTX010000388         1859 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_4354, whole genome shotgun sequence.
ACCESSION   DASWTX010000388 DASWTX010000000
VERSION     DASWTX010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1859)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1859)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1859
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4354"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1352
                     /locus_tag="VGD38_05995"
     CDS             <1..1352
                     /locus_tag="VGD38_05995"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY0727604.1"
                     /translation="NVPPQEDDYFTPVGARLDIRTAEIKPRPQEAQKTDLRADPMALE
                     AGSRLTPLLLDAQRTTLSGVRILDHQGVVIGGRADIGLSFAHLEEVQRAKTGQYASLI
                     RERAIHRPERAFASISRGTGIRVFVAFPILADNRLVGVVLLSRTPQSILEHLYNQKEK
                     VFVLAAIVLVLAAALVIFTSYAVARPLHNLIQQTKRFAKGEKDAMEPLKSPITEEVAL
                     LSESFAEMARALESRAEYIRNFAAQVSHEFKTPLTAIRGAVELLQEHEDDMSPDQRAR
                     FLRNVAEDTDRLQRLTDRLLEMARADVIAPTTGTTELKLALDNLAGRYEQQNLQVSIR
                     NADGMTAAIAPEIFETVLTNLLDNSRQNGADRADITLSRADGEIDLLIADNGSGISSA
                     NAQRIFASFFTTRRDQGGTGLGLAIAQALLRAYKGKISLEPAARGATFRVRLPEAPG"
     gene            complement(1274..>1859)
                     /locus_tag="VGD38_06000"
     CDS             complement(1274..>1859)
                     /locus_tag="VGD38_06000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727605.1"
                     /translation="PNESLDSMIQTLAFNARLPVLLGASPFYRTPHSPIARALQLTET
                     DYVQARLTALAIETDHFTRDDVYTLFVTTRIINFLKGLSIEQDTALDALMNRSWTDPR
                     AGVGFQLLRQLQLTGRWHAWAKRGQVENLHFRSGLLRRVLNEAKDVVTRTGRNIGVGD
                     FARSLKQDCQPGASGNLTRNVAPLAAGSSEIFPL"
BASE COUNT          401 a          539 c          551 g          368 t
ORIGIN      
        1 taaacgttcc accgcaggaa gatgattact tcacgccggt cggggcgcga ctcgacatcc
       61 ggactgcgga aataaaacct cggccgcagg aagcgcagaa aaccgacctt cgcgccgatc
      121 ccatggctct ggaagcgggg agccgactga ccccgctcct gctcgacgcc cagcgaacga
      181 cattgtcggg cgtgagaatt ctcgaccacc agggcgttgt gatcggcggc cgcgccgaca
      241 tcggactgtc ctttgcgcat cttgaagaag ttcagcgcgc caaaacgggg cagtacgcaa
      301 gcctgattcg agagcgagcc attcatcgcc cggaacgggc ttttgcatcg atcagccggg
      361 gaaccggtat tcgcgtcttt gtcgcatttc cgatcttggc agacaatcga ctggtgggag
      421 tggttctttt gtcgcgcacg ccgcaaagta ttttggagca tctgtacaat cagaaagaaa
      481 aagtcttcgt gctcgcggcc atcgtcctgg ttctggccgc cgctctggtt attttcacgt
      541 cctatgccgt tgcgcggccg ctgcataacc tgattcagca aaccaagcgg ttcgcgaaag
      601 gggagaagga tgccatggaa ccgttgaagt cgccgatcac ggaagaggtc gcgctgttgt
      661 ccgagagctt cgccgaaatg gcccgtgctc tggaatcccg cgccgagtac atccgcaact
      721 tcgctgctca ggtatcccat gagttcaaga cacctctcac ggcgatccgg ggcgctgtcg
      781 aactgttgca ggagcacgaa gatgatatgt ctcccgatca gcgcgcccga ttcctgcgca
      841 acgtggcaga ggacaccgat cggctgcaac gcctgaccga tcggttgctc gaaatggcgc
      901 gcgccgatgt gatcgctcct acgacgggga caacggaatt gaagctcgct ctcgacaatc
      961 tcgccggccg atacgaacag caaaacctgc aagtttcaat caggaatgcg gatggaatga
     1021 cagcggcgat cgctccggag atcttcgaaa cggtgctgac caacctcctg gataacagcc
     1081 gacaaaacgg ggcggaccga gccgatatta cgctcagccg cgctgacggt gaaattgacc
     1141 tccttatcgc cgacaacggc tccggcattt cttcggccaa tgctcaacgt attttcgcgt
     1201 ctttcttcac cacccgaaga gaccaagggg gcacgggttt ggggctggcg atcgcccaag
     1261 cgttactcag agcctataaa gggaagattt cactggaacc ggctgcaagg ggagccacgt
     1321 ttcgagtgag gttgcccgaa gcacccggtt gacaatcctg cttcagcgaa cgcgcgaaat
     1381 cgccgacgcc gatgttgcgc cctgttcgtg taacaacgtc cttggcttcg ttgagaacac
     1441 ggcgcagcag gccagacctg aagtgaagat tttccacctg tccccttttt gcccaagcat
     1501 gccagcgacc ggtcaactgc agctggcgca acaactggaa cccgacgccg gctctcggat
     1561 cggtccacga gcggttcatc aaggcatcga gcgcggtgtc ttgctcgatc gacaatcctt
     1621 taaggaaatt gatgatcctg gtcgtgacga atagcgtgta gacgtcgtca cgggtgaaat
     1681 gatccgtctc gatggccagc gctgtgagac gcgcttggac gtagtccgtt tctgtaagct
     1741 gcagagcgcg agcgatgggc gaatgcggcg ttcgatagaa cggcgaggcg ccgagcagca
     1801 ccggcagccg cgcgttgaac gcgagagtct ggatcatgct gtcgaggctt tcgttgggc
//
LOCUS       DASWTX010000389         3106 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_114608, whole genome shotgun sequence.
ACCESSION   DASWTX010000389 DASWTX010000000
VERSION     DASWTX010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3106)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3106)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3106
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114608"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..641)
                     /locus_tag="VGD38_06005"
     CDS             complement(<1..641)
                     /locus_tag="VGD38_06005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727606.1"
                     /translation="MAINPANNSVNRPTSFTLQWSDGLDPNRRDPNWFIRYDIYASGN
                     EFPENLVFADIPCNGVGTCSINVSGLVYSTRYQWRVVAKLKSPVLIPSFPGENLHITH
                     SDTFRFSTMFDPSTPTYSFRTSNGRYLTAPGGGGGDFTATATAIDSLTSQFKIIDVNG
                     GSLNSGDTVHIQTNRNYYLMAFGGGGGDVATSGWAQSWETFTIIKVGGSGSIGG"
     gene            complement(1567..>3106)
                     /locus_tag="VGD38_06010"
     CDS             complement(1567..>3106)
                     /locus_tag="VGD38_06010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727607.1"
                     /translation="IHVRELGTGSDLRVSPVSDSRYSGLSFSPDGTFVYYLENLAETG
                     TLYRVSKLGGAQRLVLENVNTAVTFSPEGSQMAFVRSSNAVDPSDLVIASADGGSSSV
                     LVRRPLTDNRFFSSDMRGPGPAWSPDGKSIACVTHGKGPKVNEFWLEVIDVASMMSKP
                     VVAGPWYHISRITWLSDGSGWIVAANATRGGPGQLYLVGNHVAGVRQITNDPNNYTLV
                     SSAKDSSVFVTRSVERSSSLWHLSLKDTPPAIINVEQKKGLSEVERGTQGRFIYSIFD
                     DKNINLWLQDASGTRQLTFEADNSKPAMSPDGQYIVFCSTRTGTMNIWRINSDGTQPV
                     QLTTGTYQDLPSFTPDSKWIIYRTGKEVRKVSMDGGPPVVLFRREVQGPAISPDGRLL
                     AFFVNAQPDSQKWHIEIYDLKSNSIVKRFEVPDSTTPFNGMLLTPDNRLRWTPDGKGL
                     GYVSSFGGASNIWLQPLNGEPFRKLTDFKEAEITSFAWSEDGREIVLVRDTRAYVPVL
                     VRLF"
BASE COUNT          683 a          848 c          884 g          691 t
ORIGIN      
        1 ccgccgatcg agccactgcc gccgactttg attatggtga aggtttccca tgactgggcc
       61 catccgctgg tagcgacgtc tccacctcca ccgccgaagg ccatgaggta atagttcctg
      121 ttggtctgga tgtggacggt atcgccgctg ttcaacgaac cgccgttcac gtcgatgatc
      181 ttgaactgcg acgtgagcga gtcgatggcg gtcgccgtcg cggtgaagtc accgccgccg
      241 ccaccgggag ctgtcaggta acggccgttg ctggtgcgga aggaatacgt cggcgtggag
      301 ggatcgaaca tcgtcgaaaa gcgaaacgtg tcggagtggg tgatatgaag attctccccg
      361 gggaagctcg ggatcaaaac tggcgactta agtttcgcca cgacgcgcca ctggtatcgt
      421 gtgctgtaga caaggccact gacgttaatg gaacacgttc caacgccgtt acatgggatg
      481 tccgcaaaga ccaggttctc tggaaactcg ttgccgctgg cgtagatgtc gtacctgata
      541 aaccagtttg gatcgcgccg gttggggtcc agaccatcgc tccattgtag agtgaagctc
      601 gtcggcctgt tgaccgagtt gttggcagga tttattgcca cgggcttgtt tgcggcaggc
      661 cgtgaaggag ggaggaaccc ataatgatta ccacccgggg aattgctgac cgggaccgcg
      721 ggtgttatcg ggtagtccgg tgagccccag ttagtcgcct cgcgccatgc gaagatgaag
      781 tagttacccg gtccgtgacc gacgtcaaag ccaaagaatc cgtctaagag agtaggactc
      841 gatgtcctgc agaggcttgg tatcatgttg ccgccactgt ctgtcttgca gaatttgatt
      901 ctaagggact gtccggggac gacggcgccg ccggcgaatt gaatccgagc atagccgctg
      961 acgtattggg cgtttgcctc cgccgccaaa gcaaacaggg aaactacggc aaaagctcct
     1021 atgagaaacc gtttcatctg aaactctcct tttcaacgtt cgtagaaggg accgacacat
     1081 gggtgaggaa ttgacgaggg gaattcctgc gccatgcgca ttgatgactg ttatctatta
     1141 atcgcgtcga acgggcgaga aacctgtcag cgggatgaat gaaaaatctg acgactggag
     1201 gttagaggtt gatagctttg agaaagctct gacgcgtatt tgagtgtctc ccattaacgc
     1261 ccgaatttca ggagaagaga gcgatgacaa tcactgcgtt gttgacaatg cttgcattag
     1321 ccgttggatc tggcgccacc acccagacaa ccgaaagtga ctccctcctc tgcccagccg
     1381 gcagagtttg caagatcgag actcactgtt gggtcaacgg agtttggacc accccatgtc
     1441 cggacgatac tccgccgccg ccggacgacc cgcacgatcc ggatattctg ttacctactt
     1501 aacgaatcaa acctcaacag tgacgcccgg gcccggatcg ggcgtcacct gttccgcaac
     1561 accttactaa aacagtctga ccagcaccgg cacataagct cgagtatcac gcaccaacac
     1621 aatttcccgg ccgtcttcgg accatgcgaa ggacgtgatc tctgcttctt tgaagtcggt
     1681 taactttcgg aatggttcgc cattgagtgg ctgaagccaa atgttggacg cgccgccaaa
     1741 gctgcttacg tatcccagtc cttttccgtc cggcgtccat cgcaaacgat tgtcgggagt
     1801 aagcagcatg ccgttgaacg gcgtggtgga atcaggtact tcaaaacgct tcacgatcga
     1861 gttcgatttg agatcgtaga tttcgatgtg ccacttctga ctatccggct gagcgttaac
     1921 aaaaaacgcg agcagtcgac catcgggcga gattgccgga ccttgtactt ctctgcgaaa
     1981 cagcacgacc ggtggtccac cgtccatcga gacctttcga acttccttgc ccgtgcgata
     2041 gatgatccat ttgctgtcag gcgtaaatga tgggaggtcc tgataggttc cggtagtcag
     2101 ctggaccggc tgcgttccgt cagagttgat gcgccagatg ttcatggtgc cggtgcgtgt
     2161 ggagcagaac acgatgtatt ggccgtcagg cgacatcgcg ggttttgaat tgtcagcctc
     2221 aaaagtcagt tgccgcgtcc cgcttgcgtc ctgtagccag agattgatgt tcttgtcgtc
     2281 gaagattgag tagatgaacc tgccttgagt tccccgctct acttccgaca gacctttctt
     2341 ctgctccacg ttgatgatgg ctggcggcgt gtcttttaac gacaagtgcc agagactcga
     2401 actgcgttcg acgcttcgcg taacgaagac actcgagtct ttcgcgctgc tgaccagcgt
     2461 gtagttgttc gggtcgttcg tgatctgcct gacgcccgcg acgtgatttc caaccaaata
     2521 gagttggccg ggaccgccac gagtcgcgtt agccgcgact atccatccgc tgccatcgct
     2581 cagccacgtt attcgcgaaa tgtggtacca cggaccagcg accacgggct tcgacatcat
     2641 cgacgcaacg tctattactt cgagccagaa ctcgttaact ttcggcccct taccgtgcgt
     2701 cacacaggca atgctttttc cgtcgggaga ccaggctggt ccaggaccac gcatgtctga
     2761 tgaaaaaaat ctgttatcgg tgagcggccg ccgcacgagc actgacgacg aaccgccgtc
     2821 cgcggacgca atcacgaggt cggacggatc tacggcgttg ctgctgcgca caaaagccat
     2881 ctgagaacct tcaggagaga acgtcacggc ggtgttcacg ttttcgagga cgagtcgctg
     2941 cgcaccgccg agtttcgaaa cgcgatacaa cgtgccggtc tcggcgaggt tctcgaggta
     3001 gtaaacaaag gtgccatccg gtgaaaacga gagaccgctg tatctcgaat ctgataccgg
     3061 ggagacgcga agatcgctgc cggtgcccag ctctctcacg tgtatc
//
LOCUS       DASWTX010000390         2693 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_353649, whole genome shotgun sequence.
ACCESSION   DASWTX010000390 DASWTX010000000
VERSION     DASWTX010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2693
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_353649"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..347
                     /locus_tag="VGD38_06015"
     CDS             <1..347
                     /locus_tag="VGD38_06015"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY0727608.1"
                     /translation="VGCGGWSRRRTLFGGDQYTARDRGYIDPATDPARIRAFFIHPDH
                     ARKGIALAILTRCETEAAAHGFRAMELLSTLPGVKFYKACGYTEEGHIDLDLTENVKL
                     GFVPMRKELGHG"
     gene            362..874
                     /locus_tag="VGD38_06020"
     CDS             362..874
                     /locus_tag="VGD38_06020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727609.1"
                     /translation="MEDRRRLLNHFLAALAYRTQKALREAPEDFGSFRVSDGVRTPAE
                     LVRHMASVLGYARTFFVGGHYWPEPRATFDEEVERFHEMLGILAQHLRNGDALLEGMT
                     EERLLQGPFSDAMTHAGQLALLRRLAGAPVPPENFIVAEIREERLGPSQADPVSPDKI
                     WPEAPQGWKP"
     gene            1032..1529
                     /locus_tag="VGD38_06025"
     CDS             1032..1529
                     /locus_tag="VGD38_06025"
                     /inference="COORDINATES: protein motif:HMM:NF003819.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HEY0727610.1"
                     /translation="MAQQNSFDIVSQVDSAEIVNALNQTLKEVRQRFDFKGSSANVVL
                     EKNELVLSAEDETKLRNMNDILQQKLVRRGVPLKAFSYGNVEPAAGGTVRQRAKIQEG
                     IPQDKAKEVVKFIKDTKVKVQAAIQGDVVRVTGRDRDTLQDIIAKLKEKDFGIHMQFT
                     NYRSN"
     gene            1529..2551
                     /locus_tag="VGD38_06030"
     CDS             1529..2551
                     /locus_tag="VGD38_06030"
                     /inference="COORDINATES: protein motif:HMM:NF012568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEY0727611.1"
                     /translation="MTLSGHTLTLDEEARISARRIFSLIANELQQVEIEFERQARSNV
                     QVIAYLGDYLRKSGGKRVRPALTILSNYAVGGEGSRYNSIRMATVMEFLHTATLVHDD
                     IIDKAETRRNRPTVNALYGNETAVLMGDWLYMSAFETSLAERSLPILDILTSVTRKMT
                     EGEILQLSLLGHADVSEAHYLDVLKRKTAYLFSASCEIGSILGGATEQQQTALRDYGL
                     NLGTAFQLIDDLLDFTSTEAALGKASGADLLGGKVTLPLIYLREAEPSTLEMIQRVLR
                     DGNYDGVSQADLFAALRRTGALERARARADEYAENARAALENLPDSDYCDSLRALPSY
                     VLNRDR"
BASE COUNT          614 a          764 c          785 g          530 t
ORIGIN      
        1 tggtcggatg cggcggttgg agccggcggc gaactctatt tggcggggac cagtacacag
       61 cgcgagaccg gggctacatt gatccggcta ctgacccggc aagaatccgc gcctttttca
      121 ttcacccgga ccacgcgcga aagggaatcg cgctggcgat cctgacgcgt tgcgaaaccg
      181 aagccgccgc gcacggcttt cgcgcgatgg agttactctc cacgcttccc ggcgtcaagt
      241 tctacaaagc gtgtggttac acggaggaag gccacatcga tctcgacctg actgaaaacg
      301 taaaactcgg gtttgtgccg atgagaaaag agttgggcca cggatgacac ggacttaaca
      361 gatggaagac agacgaaggt tactgaatca ctttctcgcg gcgcttgcgt atcgcacgca
      421 gaaagccttg cgcgaggcgc cggaggattt tggatcgttt cgcgtcagcg acggcgtgcg
      481 cacgcctgct gagttggtgc gccacatggc gagcgtgctt ggttatgcgc gcactttctt
      541 cgtcggtggt cattactggc ctgagccgcg cgcgacgttc gacgaagaag tcgaacgttt
      601 tcacgagatg ctcggcatcc tggcccaaca cctcagaaac ggcgacgcgc tgctggaagg
      661 aatgactgaa gaacgcttgc tacaaggacc gttctccgat gcgatgacgc acgcgggtca
      721 actcgcgctg ttgcgacgtc tcgctggcgc gccggtgccg ccggagaatt tcatcgtggc
      781 ggagatcagg gaagagcggc ttggaccaag ccaggctgat cccgtcagtc ccgacaaaat
      841 ctggcccgaa gctccccaag gctggaagcc gtagtaatcg aagcatggaa agcgtgaacc
      901 gtgagtcttt tggccgccaa agtgcttggc caactaaagt ttaaatcgcg gcaagagcag
      961 ttagagataa ctttcacatg caggcgtttt ggtgttatgc tccagccaac gcagactgaa
     1021 gaaccacgcc gatggcacag cagaactcct tcgacatcgt ctcgcaagtt gattcagccg
     1081 agatcgtaaa cgctctcaac caaactctta aagaagtgcg tcagcgattc gacttcaaag
     1141 gcagcagcgc caacgtcgtg ctcgaaaaga atgagctcgt gctcagcgcc gaagacgaaa
     1201 ccaaactgcg caacatgaac gacatcctgc agcagaaact cgtgcgccgc ggcgtgccgt
     1261 tgaaagcgtt cagctacggt aacgtcgaac ccgccgcagg cgggacggtt cgtcagcgtg
     1321 cgaagattca ggaaggcatt ccgcaggaca aagcgaagga agtcgtaaag ttcatcaaag
     1381 acaccaaagt taaagttcaa gccgcgattc agggcgacgt cgtgcgcgtc actggccgcg
     1441 atcgcgacac gctacaggac atcatcgcta aacttaaaga aaaagatttc ggcattcaca
     1501 tgcagttcac gaactatcgt tcaaactgat gacgctttca ggccacacac tcacactcga
     1561 cgaagaagca aggatttccg cgcggcggat cttcagtctg atcgcgaacg aactccagca
     1621 ggtcgagatc gagtttgagc gccaggcgcg ttcgaacgtc caggtgattg cttatctcgg
     1681 cgactacctg cgcaagtcgg gcggcaagcg cgtacgtccg gcgctgacga ttctttcgaa
     1741 ctacgccgtc ggcggtgaag gcagccgtta caactcgatt cgcatggcga cggtgatgga
     1801 gtttcttcac accgcgacgc tcgttcacga cgacatcatc gacaaagccg agacgcgccg
     1861 gaatcgtccg actgtcaacg cgctttacgg caacgagacc gcggtgttga tgggcgactg
     1921 gctttacatg tcggcgttcg aaacgagttt ggcggaacga tcgttgccga tactcgacat
     1981 tctcacgagc gtcacgcgca agatgactga aggcgagatc ctgcagttgt cgttgttggg
     2041 ccatgcggat gtttccgaag cgcactatct cgacgtgttg aaacgcaaga ctgcttatct
     2101 cttcagcgcg agttgcgaga tcggttcgat tctcggcggc gccacggagc agcaacaaac
     2161 ggcgttgcga gattacggat tgaatctcgg cacggcgttt cagttgatcg acgacctgtt
     2221 ggatttcact tcgactgaag ccgcgctggg caaggcctcg ggcgccgatc tgttgggcgg
     2281 caaggtcacg ttgccgctga tctacttgcg tgaagcggag ccttcgacgc tcgaaatgat
     2341 tcaacgtgtc ctgcgtgacg gcaactacga tggggtctca caagcagatc tgttcgccgc
     2401 gttacgccgc accggcgcgc tcgaacgcgc ccgcgcacgc gcggacgaat acgccgaaaa
     2461 cgcccgcgcc gccctcgaaa atcttcccga ttccgactac tgcgactctc tccgagcgct
     2521 cccgtcctac gtcctgaacc gcgaccgcta accatcgtca caacgccgaa ggcgttggct
     2581 aatttcagcc caggtgttgg aggctttgct ccaaccctgg gaattagtcg tttgtaagaa
     2641 ccaacgctga aagcgttggc gactgcaacg gggcagttcg ttaacgcttt cag
//
LOCUS       DASWTX010000391         2325 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_331664, whole genome shotgun sequence.
ACCESSION   DASWTX010000391 DASWTX010000000
VERSION     DASWTX010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2325)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2325)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2325
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331664"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            207..968
                     /locus_tag="VGD38_06035"
     CDS             207..968
                     /locus_tag="VGD38_06035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727612.1"
                     /translation="MRKPIFETIRAERGKGFTAAEVAEIDALLERLGIAADDAAVAAT
                     APDPVLETVMSTVGLDNPQVFFDSTRESGVFGGPIKPDHIKGLEAVLGAAKAANWPLA
                     FTAYALATALHETAYTMQPVREAFWLNENWRRRHLRYFPFYGRGYVQLTWKANYDKAD
                     RELELGGRLSNNLDLALDLDIAAKIMVKGMQEGWFAGDKSGGRHTLARHLPANGRASL
                     VQFTSARRIINGTDKAGKIAGEASKFQTALEAGGW"
     gene            complement(1006..2178)
                     /gene="nagA"
                     /locus_tag="VGD38_06040"
     CDS             complement(1006..2178)
                     /gene="nagA"
                     /locus_tag="VGD38_06040"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008448 - N-acetylglucosamine-6-phosphate
                     deacetylase activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HEY0727613.1"
                     /translation="MNTNVAQPPLTLQNARVVLPDRVLDAGTVVVESGLIVSVGDSVE
                     AKGEVLDLSGAILLPGFIDVHIHGAVGIDVMEATPSGLQEVSRYLATQGVTGWLPTLV
                     PGSDENYASVAAAVSEAMRSPEVGGARVLGLHYEGPFVNSAQCGALHVEHFKTYSGPS
                     DLDALPVNEDMARMITLAPEIAGGVDLIRELTRRGWVVSIGHTRASLEILDEALAAGA
                     RHMTHFMNAMSPLHHRSPGPIAWGLSHDDVTVDMIADGIHLDPFMLKLLVKLKGARGI
                     SLISDAIAAAGKGDGDYAIWGETISVKNGRTSNASGSIAGSVITMLDAVRVMHSLGIS
                     YVDIARMSATNPARLLNVHHECGSIEIGKRADLVALDADGNVHLTLCGGVYQSQVD"
BASE COUNT          520 a          694 c          665 g          446 t
ORIGIN      
        1 gcaggtttgt catcccatcg agctcgtcga cgaagcgtac gcgcaggcgg gtgtttacgc
       61 tgatggagaa taagactctc acgctgacga ttcgcaaatg gacgaaatcc gcgaagtctc
      121 ccccggccac gaaacaaaat accgcttaac gtcattagat atagcagcga aactcgggac
      181 gaccttacta cgaaacgaga ataaacatga gaaaaccgat attcgaaacg attcgtgctg
      241 agcgcggtaa gggttttacc gccgcagaag tggcggagat cgatgctctc ttagagcgcc
      301 ttggcatcgc ggcagacgat gcggcagtgg ccgcgacggc ccccgatcca gtattggaga
      361 ccgtgatgag cacagtcggt ctcgataacc cacaggtctt tttcgattca acccgtgagt
      421 ccggtgtatt cgggggtccc ataaagcccg atcacataaa ggggctcgag gccgtgctcg
      481 gcgcagctaa ggcagctaat tggccgctcg cttttaccgc ctacgcgctg gcgaccgcct
      541 tgcacgaaac cgcctacacg atgcagccgg tgcgggaagc tttctggctc aacgaaaact
      601 ggcggcgcag gcatctacgc tattttcctt tctacggccg cggctacgta caactcactt
      661 ggaaggccaa ttacgacaag gcggatcgcg aactggagct cggcggacgc ctgagcaaca
      721 atctcgatct cgcgctggac ctcgacatcg ccgcgaagat catggttaaa ggaatgcagg
      781 aagggtggtt cgccggcgac aagtccggcg ggcgccacac gttagcgcgt cacctgccgg
      841 cgaacggccg cgcgagtctg gtccagttca cttcagcccg ccggatcatc aatggcaccg
      901 acaaagccgg aaagatcgca ggtgaagcca gcaagttcca aactgcgctt gaagcaggcg
      961 gctggtaggc gtagcggtta ttcgagactg cgtgctgttg aaacgttagt cgacttgcga
     1021 ttggtacacg ccgccacaaa gcgtcaggtg gacattgccg tcggcgtcga gcgcgacgag
     1081 atcggcgcgc ttgccgattt cgatggagcc gcattcgtga tggacgttga ggaggcgggc
     1141 ggggttggtg gcggacatgc gggcgatgtc gacgtaggag atgccgaggg agtgcatgac
     1201 gcgaacggcg tcgagcatcg tgatgactga acctgcgatg ctgcccgagg cgttgctcgt
     1261 gcggccgttt ttgacagaga tggtctcgcc ccagatcgcg taatcgccgt ctccttttcc
     1321 tgccgcggcg atcgcgtcgc tgatcaggct gattccccgg gcgcctttga gctttaccag
     1381 gagcttgagc atgaagggat cgaggtggat gccgtcggcg atcatgtcga cggtgacgtc
     1441 gtcgtgagaa aggccccacg cgatcgggcc ggggctgcga tgatgtaacg gcgacatcgc
     1501 gttcatgaag tgggtcatgt gacgcgcgcc ggcagccagc gcctcatcaa gaatctcgag
     1561 actcgcgcgc gtgtggccga tcgaaactac ccaaccgcga cgcgtcaact cacgaatcaa
     1621 gtcaacgccg cctgcgatct ccggcgcgag cgtgatcatc cgcgccatgt cctcattcac
     1681 cggcaacgcg tctaagtctg aagggcctga ataagttttg aagtgctcga cgtgcagcgc
     1741 gccacattgc gcagagttca caaacggtcc ttcataatgc aaacccaaaa cccgtgctcc
     1801 accaacctcc ggcgagcgca tcgcctccga cacagccgcc gcaacgctcg cataattctc
     1861 atcactaccc ggaaccagcg tcggcaacca acccgtcacc ccctgcgtcg cgagatatcg
     1921 cgaaacttcc tgcaacccac tcggcgtcgc ttccatcacg tcaatcccaa ccgcaccgtg
     1981 aatgtgaacg tcgatgaaac caggcaataa gatcgcccct gaaaggtcca atacctcgcc
     2041 ttttgcctcg accgaatcac ctacggaaac aatcaatccg gattcgacaa ccaccgtgcc
     2101 ggcatccaac acacggtccg gcagaaccac gcgcgcgttc tgtaaagtta aaggaggctg
     2161 ggccacgttt gtgttcatga gctgaattat ataatgctta ccatgcgtat gattcgttct
     2221 cgttaccaat ccgcgtttct gattgcgctt ttactctctg ccaccgctct cgcacaaaac
     2281 ccgcagcacc aggtggaaca ggtacgcacg tattacgaga cggcc
//
LOCUS       DASWTX010000392         5685 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_221239, whole genome shotgun sequence.
ACCESSION   DASWTX010000392 DASWTX010000000
VERSION     DASWTX010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5685
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221239"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..692)
                     /locus_tag="VGD38_06045"
     CDS             complement(<1..692)
                     /locus_tag="VGD38_06045"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY0727614.1"
                     /translation="MFKPKFEVLPTSEIRKHFPALERVHNGYPVAYFDGPGGTQVPRY
                     VVEQMSDYLYHHNANTHWAYPTSAETDAAIQHAREVCAAFLNASPSEIAFGANMTTLT
                     FHLSRALGLNYSAGDEIVVTELDHHANIDTWRRLALERGVTIRTVRLDTETGQLNYYD
                     LEQFIGPKTRLVAIGAASNALGTINDLPRVIELSHNAGALVFIDAVHSASHVLLDVRA
                     LDCDFVSMSAYK"
     gene            783..1118
                     /locus_tag="VGD38_06050"
     CDS             783..1118
                     /locus_tag="VGD38_06050"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HEY0727615.1"
                     /translation="MSERRTEERMEVSLEAVWDGHGNRPARITDLSEGGCFVDTTGES
                     CLGEQLTFRVLLPDGTWLELTGEVAHYHVPVGFGLRFTTLTDEQREQLRSFIEHLKGP
                     HDEVTAVLR"
     gene            1235..2461
                     /locus_tag="VGD38_06055"
     CDS             1235..2461
                     /locus_tag="VGD38_06055"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY0727616.1"
                     /translation="MIHPSERATNFQYAIRNVVRAAEALERKGRHVIYLNIGDPQSFG
                     FRPPDFVIEAVNRAVSEKFTGYSHSSGLLETREAIARYATGLGSPTETKDVIVTSGAS
                     EAADLTLTALVDPGDEVLLPAPGYPIYPAIVGKLGAKVRYYHLQPNDNWHPSADEIRS
                     LINPKTRAIVLINPSNPAGSITPDSTTREVLALAAERNLLVISDEVYRELCFSPAPTA
                     ASVLAKETGAAVVTLESLSKTHMLPGWRIGWLRFTHPERMGGLTDAVVKLAGGRLCSP
                     TPAQYAVAPALESSRDYINNFLSEIKRRRDLATARIASIDGLSCVVPEAAFYLMVKTE
                     NLNGRTDEQFALDLLEASGVLVVHGSGFGCDPSDGYFRLVYLAGEQTLDAAFDGIEQA
                     MQMTPQESGIGAALHV"
     gene            2679..3059
                     /locus_tag="VGD38_06060"
     CDS             2679..3059
                     /locus_tag="VGD38_06060"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HEY0727617.1"
                     /translation="MRRLRAKCEVELAATLSLLDSDAYDEDSKLIFFGQTSDLSAEGL
                     AMVLPATIIDERFCSGSNRLKLSLHLPDGVVGLEVTPVRCERLTDAYSVHGYLLGTRI
                     TNVEHRAPFERYLDSVSGQSIGLL"
     gene            complement(3042..3782)
                     /locus_tag="VGD38_06065"
     CDS             complement(3042..3782)
                     /locus_tag="VGD38_06065"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEY0727618.1"
                     /translation="MIRVSGLRKRFGSREILKGISFDVPQQTVLGVIGASGSGKSTLL
                     RCLNGLETINDGTIECDNVRLEAGISHADYRRRVKDLRLKVGTVFQHFHLFPHLSVLG
                     NIIEAPVHVLRTPKKKAETEALQLLESVGLAGAATRYPISLSGGEQQRVAIARALAMH
                     PALLLLDEPTSALDPRRINSLRTLLRTFVDRGHTMIIISHSMGFLGGVADHILFMEEG
                     FVVEHGPADQVLESPKDPRTKSFLEQAD"
     gene            complement(3779..5287)
                     /locus_tag="VGD38_06070"
     CDS             complement(3779..5287)
                     /locus_tag="VGD38_06070"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding
                     protein/permease"
                     /protein_id="HEY0727619.1"
                     /translation="MAKARVILIAAILCGLCACWPVHAQQTLRWGADPSGGAPYVYTD
                     PANPDNYIGYEKEMVDALAAAMGRRAEFVPSDWETLVSALQRNSFDVIVNGLEPTGDR
                     AQQILFSKPYYIFQLQLTVRRDDNRISSLADCKNRVVGTLANTAASRLLQQEGIPFKS
                     YADPVGAYRDLELKRIDAALFDVPAEVFYARPNPKLKRAGEPFTRGLYVIGLRKGDEA
                     LKAEVDQGIDKIIRDGTLETILKKWGLWNDAQVEFQTPIREGTQTQTNVEYTTTNATF
                     NWGEALWRLTRAAGVTVFIALGSMVIAIFLGLPLAIGQWKGPAWLRALCTIYVEFFRG
                     TPVLVQLLFLYFGLPVIGIAMPGWLTALVGLGLNYAAYESQVYRAALEAIPHGQWEAS
                     YSLGMSAVLAFRRIILPQAFRIALPPMTNDFVSLFKDTSVAFAISVWELATAYRELAN
                     ASGQFLLLGLAVSAFYLLMSLPMAHLARLLERRLSSRATERTVEAEPLEVGA"
     gene            complement(5280..>5685)
                     /locus_tag="VGD38_06075"
     CDS             complement(5280..>5685)
                     /locus_tag="VGD38_06075"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HEY0727620.1"
                     /translation="ANDNFGRWRSDFKKIVDHCCDEGKGKEFVELLLPDEDDYFVLKP
                     KHSGFYSTTLALLLTHLTAKNLILTGIAGNNCVLVTANDAYMRDFKLFVPADCVVSNT
                     EEQNQHALEQMQTVLKADITISTELDLQKISG"
BASE COUNT         1176 a         1699 c         1676 g         1134 t
ORIGIN      
        1 aacttgtacg ccgacatgct gacgaaatca caatccagcg cgcgcacgtc gagcagcacg
       61 tgcgacgcgg aatggaccgc atcaataaag acgagcgcgc ccgcgttgtg tgacagctcg
      121 ataacccgcg gcaggtcgtt aatcgtaccg agcgcgtttg acgccgcgcc gatcgccacc
      181 agacgcgtct tcggtccgat gaactgctcc aggtcgtagt agttgagctg accggtttcg
      241 gtgtccaggc gaacggtgcg aatcgtaacg ccgcgttcga gcgccagccg tcgccacgtg
      301 tcgatgttcg catggtgatc gagctcggtg acgacaatct cgtcgcccgc cgagtaattc
      361 aggccgagcg cgcgcgacag gtgaaacgtc aacgtcgtca tgttcgcgcc aaacgcgatc
      421 tccgaaggcg acgcgttcag aaacgccgcg caaacttcgc gggcgtgctg gatggcggcg
      481 tcggtctcgg cgcttgtcgg ataagcccag tgggtgttgg cgttgtggtg ataaagatag
      541 tcgctcattt gctcgacgac gtaccgcggc acctgcgtgc cgccggggcc gtcgaagtag
      601 gcgaccgggt agccgttgtg cacccgttcc agggccggaa agtgctttct gatctcactt
      661 gtgggaagga cttcgaattt tggtttgaac atggcgtgcc atgatataaa atcaaaccgt
      721 cgcccaacag tggccggacc tcagtcagcc cggcgcgctg ttcccaagtc ccagaaatta
      781 atatgagcga acgccgcact gaagagcgaa tggaagtctc gctggaggcc gtttgggacg
      841 gacacggaaa ccgtcccgcg cggattacgg acctctcgga aggcggctgc tttgtcgaca
      901 ccaccggcga atcctgcctc ggcgagcagc ttacgtttcg ggtcttgctt cctgacggga
      961 cgtggctgga actgacgggg gaagtggcgc actatcacgt acccgtgggt tttgggctgc
     1021 gtttcacgac tctcacggac gagcagcggg agcagttgcg ctcttttatc gaacacctca
     1081 aaggcccaca cgacgaggtc accgcagtgc tgcggtaggt tgcgagtata agcaacccac
     1141 caacttcgtt ggtgggattc cggaaagtgt cgcggaaacg gagttagctc gcgtcgctat
     1201 gcctcgcccg tagaatcttt tacaatgacg ggccatgatt cacccgtcag aacgagctac
     1261 caacttccag tacgccatcc gtaacgttgt ccgcgccgcc gaagcactcg aacgcaaagg
     1321 ccgccacgtc atctatttaa acatcggcga cccgcagtca ttcggattta gaccacccga
     1381 cttcgtgatc gaggccgtta accgcgccgt cagcgaaaag ttcaccggtt attcgcattc
     1441 ctccggcttg ctcgaaaccc gcgaggcgat tgcgcgttac gcaaccgggc tcggctcgcc
     1501 caccgaaacg aaagacgtaa tcgtcacttc gggagcttca gaagccgccg acttaacact
     1561 caccgccctc gtcgatccgg gcgatgaagt gttgctgccc gcgccgggct atccgatcta
     1621 tcccgcgatc gtcggcaagc tgggcgcaaa ggtccgttat taccacctgc agccaaacga
     1681 taactggcac ccttcagccg acgaaattcg ttcgctcatc aatcccaaaa cacgcgccat
     1741 cgtcctgatc aatccgagca atcccgccgg ttcgatcacg cccgacagca cgacccgcga
     1801 agtgctcgcg ctcgcagccg aacgcaacct gctcgtgatt agcgacgagg tctatcgcga
     1861 actgtgcttc agccccgcgc cgacagccgc atcggttttg gcaaaggaaa ccggcgccgc
     1921 agtcgtcacg ctcgagagtt tgtcgaagac gcacatgctc cccggctggc gcatcggttg
     1981 gcttcgtttc acgcatcccg aacgcatggg gggactcacc gacgcggtag tcaaactcgc
     2041 gggcggccgt ttatgctcac ccacacccgc gcagtacgca gtcgctccgg ccctcgaaag
     2101 cagccgcgac tacatcaaca atttcctgag cgaaatcaaa cgacggcgcg acctcgcgac
     2161 cgcgcgaatc gcgtcgatcg acggcctgag ttgcgttgta ccggaagcgg cgttctacct
     2221 gatggtcaaa actgaaaacc tgaacggccg caccgacgag cagtttgcgc tcgatcttct
     2281 ggaagcctcc ggcgtgctcg tggtccacgg ttcgggcttc ggctgcgacc cgtccgacgg
     2341 ctatttccgg ctggtttacc tggcgggcga gcagactctc gacgcggctt tcgacggaat
     2401 cgagcaggcc atgcagatga cgccccagga aagtgggatt ggcgccgcat tgcacgttta
     2461 attgattcga acgtcaaaca attaaataac ggcgaattaa cggcttcccc atgtacaaac
     2521 tgatcgtttc gtgctactac tggccggctg gagcgcgggg gctgcggctt cggactatta
     2581 cactcaaaca aaacgtgaat gaaactggtc ttaccccctc tcgacacgga cgactgacca
     2641 gcttggacaa gcttgcttca tcgatagaac gtagaagcgt gcggcgcctt cgcgcgaagt
     2701 gcgaagtcga gctcgcggct acgctgtcgc tgctcgacag cgacgcctac gacgaagatt
     2761 caaagctgat cttcttcggc caaacaagcg acctcagcgc cgaaggtctg gcgatggtcc
     2821 tgcccgcgac gattatcgac gaacgttttt gcagcggctc gaacaggctg aaactctcgt
     2881 tgcacctgcc ggacggggtt gtgggtttgg aagtaacgcc ggtgcggtgt gagcgcctga
     2941 cggatgctta ctcagtgcac ggctacctgc tcggaaccag gatcacaaac gtcgaacatc
     3001 gcgcgccgtt cgagcgctat ctcgacagtg tttccggtca atcaatcggc ttgctctaag
     3061 aaactcttcg tgcgcggatc tttcggggac tcgagaacct gatcggctgg tccgtgctcg
     3121 acgacgaacc cttcttccat aaacagaatg tggtcggcga cgccgccaag aaatcccatc
     3181 gagtgggaaa tgatgatcat cgtgtgcccg cgatcgacga aggtgcgcaa caacgttcgc
     3241 aggctgttga tgcgtcgcgg atcgagcgcg ctcgtgggtt cgtcaagcag caacagcgcc
     3301 ggatgcatgg cgagtgcgcg agcgatcgcg acgcgttgtt gttcgccgcc tgataacgaa
     3361 atcggatagc gcgtggcggc gcctgcgagc ccgacggatt cgagtagctg cagtgcttcc
     3421 gtttccgcct tcttctttgg cgtacgcagg acgtgaaccg gcgcttcgat aatgtttccg
     3481 agcacggaca ggtgagggaa caggtggaag tgctggaaca ccgttcccac tttcagccgc
     3541 agatctttca cccgacgcct gtagtctgca tgggaaatcc cagcttccaa acgcacgttg
     3601 tcgcactcga tcgtgccgtc gttgatcgtc tcgagcccgt tcagacaacg caaaagcgtc
     3661 gacttgccgc tgcctgacgc gccgatcacc ccgagcacgg tttgctgcgg cacgtcgaaa
     3721 ctgatccctt tcaaaatctc acgcgagccg aaacgtttgc gcagaccgga gacgcgaatc
     3781 atgccccaac ctccagtggc tcggcttcca cggttctttc ggtggcgcga ctgctgagcc
     3841 gtcgttcaag caaccgcgcg agatgggcca tcggcaaact catcagcagg tagaacgccg
     3901 agaccgcgag tccgagcaac aggaactgtc ctgatgcgtt cgcgagctcg cgatacgccg
     3961 tggcgagttc ccacaccgag attgcaaacg ctactgacgt gtctttgaaa agcgaaacaa
     4021 agtcgttcgt catcggcggc aacgcgatgc gaaacgcctg cggcaggatg atgcggcgaa
     4081 acgcgagcac cgcgctcatg ccgagtgaat acgaagcttc ccactggccg tgcggaatcg
     4141 cttccaaagc cgcgcgatag acctgcgatt cgtaagcggc gtagttgagt ccgagtccca
     4201 cgagggccgt cagccagccg ggcatggcga tgccgatcac gggcaagccg aagtacagaa
     4261 acagcagttg gaccagtacg ggcgtgccgc ggaagaactc gacgtagatc gtacacagcg
     4321 cgcgcagcca tgccggtcct ttccactgtc cgatggcgag cggcagacca agaaagatcg
     4381 cgatgaccat cgagccgagt gcgatgaaga ccgtgacgcc agcggcgcgc gtcaggcgcc
     4441 agagtgcttc gccccagttg aacgtcgcgt ttgtcgtcgt gtactcgacg tttgtttgcg
     4501 tctgcgtgcc ttcgcgaatc ggcgtttgaa attcgacctg cgcgtcgttc cagagtcccc
     4561 actttttgag aatcgtttcg agcgtgccgt cacggatgat cttgtcgatg ccttgatcga
     4621 cttccgcttt caacgcttcg tcgcctttgc gcaacccaat gacgtagagg ccgcgcgtga
     4681 aaggctcgcc ggcgcgtttc aacttcggat tcggccgcgc gtaaaaaact tccgccggca
     4741 cgtcaaacag cgccgcgtcg atacgcttca gctccaggtc gcgataggcg ccaacgggat
     4801 cggcgtaact cttgaacgga attccctcct gttgcagcaa tcgcgacgcg gcggtgtttg
     4861 cgagtgtgcc gacgacgcgg tttttgcagt ccgcgagtga cgagatgcgg ttgtcgtcgc
     4921 ggcgaaccgt gagttggagt tgaaagatgt agtaaggctt gctgaaaagg atctgctgcg
     4981 cacgatcgcc ggttggctcg aggccgttga cgatcacgtc gaacgaattg cgctgcaacg
     5041 cggagacgag tgtttcccaa tcgctcggca caaactccgc acgccggccc atcgccgcgg
     5101 cgagcgcgtc gaccatctcc ttttcgtagc cgatgtagtt atccggattc gcgggatcgg
     5161 tgtagacgta aggtgcgccg ccgctcgggt ctgcgcccca acgcagggtc tgttgcgcgt
     5221 gtacgggcca acaagcacac aggccgcaca agatcgcagc gattagaatg acgcgggcct
     5281 tagccactga tcttctgcag gtccaattcg gtggaaatgg tgatatcagc tttcaaaact
     5341 gtctgcatct gctccaacgc gtgttgattc tgttcctcag tgttggaaac aacgcaatcc
     5401 gccggcacga agagtttgaa gtctcgcatg tacgcgtcgt tggcggtgac gagaacacaa
     5461 ttattgcctg ctatgccggt gaggatcagg ttcttcgcgg tgaggtgcgt gagcagcaac
     5521 gcgagcgtcg tcgaatagaa gcccgaatgt tttggtttca ggacgaagta gtcgtcctcg
     5581 tccggcagca acagttcgac gaactctttg cctttaccct cgtcgcagca gtgatcgacg
     5641 atcttcttga aatccgaacg ccagcggccg aagttatcgt tggcg
//
LOCUS       DASWTX010000393         1587 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_114753, whole genome shotgun sequence.
ACCESSION   DASWTX010000393 DASWTX010000000
VERSION     DASWTX010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114753"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1587
                     /locus_tag="VGD38_06080"
     CDS             <1..>1587
                     /locus_tag="VGD38_06080"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0727621.1"
                     /translation="QGSAGSVRGDFAINVNGAREDSNNFLLDGVYNIDPKLNTFGVRP
                     SVDAIREFEMLTSTYDASFGRNPGAQINVILNSGSNDFHGSLFEFHRNAALDARNFFA
                     PASEPKPKYLRNQFGGSIGGPIVRDRTFFFADYEGTRSREGITRITNVPTLAERQGNF
                     SQSLFGVPTNPFTGQPFDGGVIPSFFINPVGRAIAALYPLPNRDVPFQNFVSSPVQRE
                     DNDSFDVRVDHRLTDSADLTFRYSFGDRDLFEPFTGPSLALVPGFGDTVKRRSQNAMG
                     ALTLVPTPNLVNETRVAFSRVAASVTQEASVLNSEVGLPTVSPRERDLGLSFITVTGF
                     SPLGDEGNNPQNSVTNVYQLINNSSYVHGDHLIKFGLDFRFSQQNAFRDVESRGRLQF
                     SPFLTLTNNSLADLLLGFPLLTSVARVDNPQQIRTESYNFFINDSFRVTPRLTLVGGL
                     RYEYNSPPVDKDDRANVYDVATGSLVQVGTNGVPRSGFEGDKNNFAPRVGFAWTIGDD
                     QLTVLRGGYGVYYDQSPLAPA"
BASE COUNT          295 a          473 c          447 g          372 t
ORIGIN      
        1 gcaaggctcg gccggttctg tacgcggcga tttcgcgatc aatgtcaacg gcgcgcgcga
       61 agactcgaac aacttcctgc tcgacggcgt ttacaacatc gatccgaagc tgaacacgtt
      121 tggtgtgcgt ccgtctgtcg atgcgattcg cgagtttgaa atgctgacga gcacgtacga
      181 tgcttcgttt ggccgcaatc cgggcgcgca gatcaacgtc attctcaact ccggctccaa
      241 cgactttcac ggttcgctgt ttgaatttca ccgcaacgct gctttagacg cgcgcaactt
      301 cttcgcgccc gcgtcagagc cgaaaccgaa gtacttgcgc aaccagtttg gcggctcgat
      361 tggcggtccg atcgtgcgcg accgcacgtt cttcttcgcc gactacgaag gcacgcgctc
      421 gcgtgaaggc atcacgcgca tcacgaacgt gcccacttta gcggagcgtc aaggcaactt
      481 ctcgcagagc ctcttcggtg tcccaaccaa tcctttcacg ggccaaccat tcgacggcgg
      541 cgtgatccca tcgttcttca ttaaccccgt cggccgtgcg attgccgcgc tttatcccct
      601 ccccaacaga gacgtgccat ttcaaaactt cgtctcgtcg ccggtgcaac gcgaggacaa
      661 cgacagcttc gacgtgcgcg tcgatcatcg tttaaccgac agcgcagacc tgacgttcag
      721 atacagcttt ggcgatcgcg atctgtttga gccgttcact ggtccatcgc tcgcgctcgt
      781 gcccgggttt ggcgataccg tcaaacggcg cagtcagaat gcgatggggg ctttgacgct
      841 cgtgccgacg ccgaatctcg tgaatgagac gcgcgtcgcg tttagccgcg tcgcggcttc
      901 ggtgacgcag gaagcgagtg ttctcaattc tgaagtcggg ttgccgactg tctcgccgcg
      961 tgagcgcgat ctgggtttga gttttattac cgtcacgggt ttctcgccgc ttggagatga
     1021 aggtaacaat ccgcagaaca gcgtcacgaa cgtctatcag ctaatcaaca actccagtta
     1081 cgtgcatggc gatcacctga tcaagtttgg tcttgatttc cgtttctcgc agcagaatgc
     1141 gtttcgtgat gttgagtcgc gcgggcgttt gcagttctcg ccgttcttga cgctcactaa
     1201 caactcgctg gctgatttac tgcttggttt tcccctcctg acgagcgtcg cgcgtgttga
     1261 taatccgcag cagattcgta ctgagagtta caactttttc atcaacgaca gttttcgcgt
     1321 gacgccgcgg ctgacgctcg tcggcggtct gcgttatgag tacaactcgc cgccggttga
     1381 taaagacgac cgcgcgaatg tttacgatgt ggcgacgggc tcgctcgtgc aggtgggaac
     1441 gaacggcgtt ccccgcagcg gcttcgaggg cgataagaac aacttcgcgc cgcgtgtcgg
     1501 gtttgcctgg accatcggcg acgaccagtt gaccgtcctg cgcggtgggt atggcgttta
     1561 ctacgatcaa tcgccgctcg ccccggc
//
LOCUS       DASWTX010000394         2755 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_28550, whole genome shotgun sequence.
ACCESSION   DASWTX010000394 DASWTX010000000
VERSION     DASWTX010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2755)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2755)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2755
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28550"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..752)
                     /gene="pstA"
                     /locus_tag="VGD38_06085"
     CDS             complement(<1..752)
                     /gene="pstA"
                     /locus_tag="VGD38_06085"
                     /inference="COORDINATES: protein motif:HMM:TIGR00974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEY0727622.1"
                     /translation="MDHADRIRRANSAFMTGLTALCTLLAVGALLVILSYIAWQGIGS
                     LNIRFLTDVPRPVGEGGGIGNAILGSVWLLLLSSVIGLPLGICVGVYLSEVGKGRFGG
                     AVRFIVDTLTGIPSIVTGVFVYAVLVLPMKHFSAWAGGVALALIMIPIVARTTEEMLK
                     LVPHSLREGALALGAPQWRVTLGVVIPAAAPGIATGAMLAIARVSGETAPLLFTAFGS
                     RFFPTSLNEPIASLTVQIYNYAISPYDEWHAQA"
     gene            complement(752..1750)
                     /gene="pstC"
                     /locus_tag="VGD38_06090"
     CDS             complement(752..1750)
                     /gene="pstC"
                     /locus_tag="VGD38_06090"
                     /inference="COORDINATES: protein motif:HMM:TIGR02138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEY0727623.1"
                     /translation="MSWAPESDNPNFVGQVSTWRRVLSPTGNTGDAIYRVLMLAVALL
                     MVGIVIAMVVALTRDSMLSVRQFGWGFLTSQRWDPIKGDFGALPFIYGTIASSLIALV
                     ISVPFSLGIAIFLVEQAPSWLARPVGFLVELLAAIPSVVYGLWGIFVLAPFLRNYIQP
                     TLASAFGWLPLFKGQITGIGLLTGGIILAIMVTPIISAVVRDVLTAVPGSQREAALAL
                     GATKWEMIRVVLVNGAPGIAGAVSLGLGRALGETMAVTMVIGNRPEISLSLFDPSYTI
                     ASAIATEYTEATGDLYLSSLVELGLILFLVTFVVNGIARVLVWNVTRKTGGVGRAA"
     gene            complement(1750..>2755)
                     /gene="pstS"
                     /locus_tag="VGD38_06095"
     CDS             complement(1750..>2755)
                     /gene="pstS"
                     /locus_tag="VGD38_06095"
                     /inference="COORDINATES: protein motif:HMM:TIGR00975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0042301 - phosphate ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HEY0727624.1"
                     /translation="GGGGAGGSGRVSLHGAGATFPNPLYQKWLSEYEKVHPNVRIDYQ
                     SIGSGGGIKQLKEQTVDFGASDAPMKDEDLKSAPGEILHIPTVLGAVIITYNLAGVNQ
                     PLRFSSDVIADIYLGKVTKWNDARIAADNPGVNLPANDITVVHRSDGSGTSAVFTDYL
                     SKVSAEWKEKVGSGTSPSWPLGLGGKGNEGVTGQVKNTPNTIGYVELAYAVQNKLPVA
                     HIKNSSGSFVEPSIDAVTAAAAASASSMPEDLRVSITNAAGAQAYPIASYTYILVYKD
                     QKDAAKGKALVDFLWWGIHDGEAFAKDLQYAPLPADVVKRAEAKINAITAGGTPLRQS
                     "
BASE COUNT          631 a          911 c          718 g          495 t
ORIGIN      
        1 gcctgcgcgt gccattcgtc atacggcgag atcgcgtagt tgtagatctg caccgtgagc
       61 gaagcgatcg gttcgttgag tgaagtcgga aagaaccggc tgccgaaagc ggtgaacagc
      121 aatggcgccg tctcaccgga gacgcgcgcg atcgcgagca ttgctccggt cgcaattccc
      181 ggcgccgctg ccggaatcac gactcccaac gtcacgcgcc attgtggcgc gcccaatgcc
      241 aacgcgcctt cacgcaaact gtgcggcacg agcttcagca tctcttccgt agtccgcgca
      301 acgatcggga tcatgatcag cgcgagtgcg acgccgccgg cccacgccga aaagtgtttc
      361 atcggcagga ccagcactgc gtaaacaaag acgccggtca cgatcgacgg aatgcccgtc
      421 aacgtatcga cgataaaacg aaccgcgccg ccaaaccgtc ccttgccgac ttccgaaaga
      481 taaacaccaa cacaaattcc gagcggcaga ccgatcaccg aagacaacaa cagcaaccaa
      541 accgaaccga gaatcgcgtt gccgatgccg ccgccttcgc ccaccggccg cggcacgtca
      601 gtcagaaaac gaatattcag cgagccgatt ccctgccacg cgatgtacga aaggatcacc
      661 agcaacgcgc cgacggcgag cagtgtacac aacgccgtca ggcccgtcat aaatgcgctg
      721 ttcgcacggc gaattcgatc tgcgtggtcc attatgctgc cctgccgact ccgcccgtct
      781 ttcgcgtcac gttccacacc agcacacgcg cgataccgtt cacgacaaac gtcaccaaaa
      841 acaggatcag tccgagttca accagcgagc tcaaatacag atcgccggtc gcttccgtgt
      901 actcggtcgc gatcgccgaa gcgatcgtgt acgaaggatc gaaaagcgag agactgatct
      961 ccgggcggtt gccgatcacc atcgtcacgg ccatcgtctc gccgagtgcg cggccgagac
     1021 caagactcac ggcgcccgca attcccggtg cgccgtttac caaaacaact cgaatcatct
     1081 cccacttggt cgcgccgagt gcgagcgcgg cttcacgctg cgaacccggc acggcggtca
     1141 gtacatcacg caccaccgcg gaaatgatcg gcgtgaccat gatggcgaga atgattcctc
     1201 ctgtgagcaa accaatacca gtgatctgtc ctttgaagag cggcaaccaa ccaaacgcgc
     1261 ttgcaagcgt tggctggatg tagttgcgca gaaacggcgc cagcacgaag attccccaga
     1321 ggccatagac cactgaggga atggcagcca gtagttccac aagaaaacca accggccgcg
     1381 ccagccagct cggcgcctgc tcgaccagga agatcgcaat acctaacgag aatggaacgc
     1441 tgatcacgag cgcgatcagc gatgaagcaa tcgtgccgta gatgaacggc aacgcgccaa
     1501 agtcgccttt gatgggatcc caacgctggc tcgtcaaaaa cccccagcca aactggcgca
     1561 ccgaaagcat cgaatcgcgc gtcaacgcga cgaccatcgc gatcacgatg ccgaccatca
     1621 acaacgccac cgcgagcatg agcactcggt agatcgcgtc acccgtgttg ccggtcggcg
     1681 agagcacacg ccgccaagtc gagacctgtc cgacaaaatt cgggttatca ctttccggcg
     1741 cccagctcat cagctttgtc taagcggcgt tcctccagcc gttatcgcgt tgatctttgc
     1801 ttccgcacgc ttcacgacgt cggccggcaa cggcgcgtac tgcaagtctt tcgcgaaagc
     1861 ctcgccgtcg tgtattcccc accacagaaa atcgacgagg gctttgcctt tcgctgcatc
     1921 cttctgatct ttgtagacga gaatgtacgt gtagctcgcg atcggataag cctgcgcgcc
     1981 ggccgcgttg gttatcgaca cgcgcaaatc ctcgggcatg ctcgaagcgg atgcagccgc
     2041 tgccgcggtc accgcatcaa tcgatggttc aacgaaactg ccactcgagt tcttgatatg
     2101 cgccaccggc agtttgttct gcaccgcgta cgccaactcg acgtagccga tcgtattcgg
     2161 cgtgttcttg acctggcccg ttacaccttc gttacctttg ccaccgagac cgagtggcca
     2221 actcggcgac gtacccgatc ccaccttctc tttccactcc gcgcttacct tcgaaagata
     2281 atcagtgaac acagcggaag tgccgctacc gtccgaacga tggaccacgg tgatgtcatt
     2341 cgccggtaag ttcacacccg ggttgtcagc cgcaatcctc gcatcgttcc acttcgtgac
     2401 tttgcccagg taaatatccg cgatcacgtc ggacgaaaaa cgcaacggct gattcacacc
     2461 cgcaaggttg taagtaatga tcaccgcgcc gagcacggtc ggaatgtgca gtatctcgcc
     2521 gggcgccgac ttcagatcct catccttcat cggcgcgtcg gaagcaccaa agtcaacggt
     2581 ctgttccttg agctgtttga tcccgccgcc ggagccgatt gactgatagt cgatccgcac
     2641 gttcgggtga accttctcat actcactcaa ccacttctga taaagcggat tcggaaacgt
     2701 cgcgcccgcg ccatgcaaac tcaccctccc actgccgccc gcgccgccgc cccca
//
LOCUS       DASWTX010000395         1553 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_28554, whole genome shotgun sequence.
ACCESSION   DASWTX010000395 DASWTX010000000
VERSION     DASWTX010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28554"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..281)
                     /locus_tag="VGD38_06100"
     CDS             complement(<1..281)
                     /locus_tag="VGD38_06100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727625.1"
                     /translation="MDTKMNTNEISSRALAAWEIVSVVVSCLIAEWVVLAFLGANKIA
                     LAIPVAFALALMFFSHRVYGESARDLGFRTDNFAGAAKLLVLPTIAAVVA"
     gene            complement(266..718)
                     /locus_tag="VGD38_06105"
     CDS             complement(266..718)
                     /locus_tag="VGD38_06105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727626.1"
                     /translation="MTHPRSQLVNLLIGKSILEIVLVGTIAVVAYVNAFPPTLQGWGE
                     PVVDTRSIAGWAVNYASPWDRLEVQLFIDDKLHGTQVAQLSRPDVVAAGWAKDEWHGY
                     NFPVSDLPPGDHEARVYALHKNGEQITLQLLGNPIRFAVNGDGTWTRR"
     gene            complement(720..>1553)
                     /locus_tag="VGD38_06110"
     CDS             complement(720..>1553)
                     /locus_tag="VGD38_06110"
                     /inference="COORDINATES: protein motif:HMM:NF014895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PEP-binding protein"
                     /protein_id="HEY0727627.1"
                     /translation="SEHEQYEAYKALAEAAGTDGAIVRLFDVGGEIGNDTGEHERNPA
                     LGLRAVRFALRTKHGMRTQVRAILKAAAMGKLSLVIPMVADLADVKAAKKLIAEEVVT
                     LTERKESFAEVPIGAMIEVPSAVLTAEKIATELDFFELGTNDLVQYTLAVDRGNDQVA
                     SWFRTLHPAVLYGIKRTLQAGSDAQIPVIVCGEMASTPAYAVLLAGLGATDLSMTPAM
                     IPRVRSVLAQIETTEARTVAERCLNAASADEVEDIVRDEFKTRWPELFPPNMLPRVIE
                     N"
BASE COUNT          283 a          449 c          490 g          331 t
ORIGIN      
        1 gctacaacgg cggcgattgt gggtaggacc agcagtttgg cggctccggc gaagttgtcg
       61 gttcggaagc cgaggtcacg cgcgctctcg ccgtaaacgc gatgtgaaaa gaacattaac
      121 gcgagcgcaa aggcgactgg aatcgcgagc gcgatcttgt tggcgccgag aaacgcgagc
      181 acgacccatt cggcgatcag acatgaaacg acgacagaca cgatctccca cgccgccaac
      241 gcacggctgc tgatctcgtt cgtgttcatc ttcgtgtcca cgttccgtct ccgtttactg
      301 caaaccgaat cggattgccg aggagttgca gagtgatctg ctcgccgttt ttgtgcagcg
      361 cgtacacgcg tgcttcgtga tctcccggcg gcaagtcgga aaccgggaag ttgtaaccgt
      421 gccactcgtc tttggcccag ccggcggcga cgacgtcggg ccgcgagagt tgggccacct
      481 gcgtgccgtg gagtttgtcg tcgatgaaga gttgtacttc gagacgatcc cacggcgatg
      541 cgtagttcac ggcccagccg gcgattgagc gtgtgtcgac gacgggttca ccccaaccct
      601 gcagcgtcgg gggaaaggcg ttaacgtaag cgacgactgc gatcgtgccg accaacacga
      661 tttcgagaat cgacttcccg atgagtagat tgacgagctg cgagcggggg tgcgtcatgc
      721 tagttttcga ttacgcgcgg aagcatattg ggtggaaaca gttccggcca gcgcgttttg
      781 aactcgtcgc gcacgatgtc ctcgacttcg tctgcgctcg cggcgttgag gcaacgttcg
      841 gcgacagttc gcgcctccgt tgtttcgatc tgcgccagga cggatcgcac gcgcgggatc
      901 atcgccggtg tcatactcaa atccgtcgcg ccgaggccgg ccaggagaac ggcgtacgcg
      961 ggtgtcgaag ccatttcgcc gcaaacaatc acgggaattt gggcgtcgct gccggcttgc
     1021 agcgtgcgtt tgatgccgta gagcacggcg ggatgcagcg tgcgaaacca gctcgcgacc
     1081 tgatcgttgc cgcgatcgac ggcgagtgtg tattggacca gatcgttggt gccgagttca
     1141 aagaaatcca gttcggtggc gatcttttcg gcggtcagaa ccgctgacgg cacttcgatc
     1201 atcgcgccga tcgggacttc ggcaaaactt tctttgcgtt ctgttagagt cacgacttct
     1261 tccgcgatca gtttcttcgc tgctttgacg tccgccagat ccgcgaccat tgggatcacc
     1321 aggctcaact ttcccatggc cgcggctttc agaattgcac gcacctgggt gcgcatcccg
     1381 tgcttggtgc gtaaagcgaa gcgtacggcg cgcaggccaa gcgcagggtt gcgttcgtgt
     1441 tcgcccgtgt cgtttccgat ctcgccgccg acgtcgaaca gccgcacgat cgcgccgtcg
     1501 gttccggcgg cttcggcgag tgctttgtaa gcttcgtact gctcgtgttc gga
//
LOCUS       DASWTX010000396         1570 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_288021, whole genome shotgun sequence.
ACCESSION   DASWTX010000396 DASWTX010000000
VERSION     DASWTX010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288021"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..612
                     /locus_tag="VGD38_06115"
     CDS             <1..612
                     /locus_tag="VGD38_06115"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY0727628.1"
                     /translation="NAWPGFGAQKQFAVEQTQHEWIFSLDADERVSDELRDSIQKLRG
                     SSETADGYEIARRTYYQQRWIRGGGWYPDRQLRLFHRTTGSWKQRHIHESVAMNNGAR
                     VGVLDGDLLHYTSPNAAHHHRVIGERYAPLAAQQMYEEGRRTSIFSVASAGPAAFIRS
                     FILKGGFRDGFAGFTIASFAAHHAFLKHLMLWEKQATDQTDKN"
     gene            613..1482
                     /locus_tag="VGD38_06120"
     CDS             613..1482
                     /locus_tag="VGD38_06120"
                     /inference="COORDINATES: protein motif:HMM:NF013632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HEY0727629.1"
                     /translation="MPDLSLAPPAFGYILAAIFGAIIGSFLNVVIHRVPLEESVVFPN
                     SRCPSCGAVIAFYDNIPVISWLLLRAKCRGCRQPISFRYPAVELLTAALFVAVAWHDG
                     ISVALPFDLIFVSALLALIFIDAEHMILPNVITYPGMVFAVVARIAIPLLSSTPHFDD
                     LPSLSQGAFADMPNWVTSVAGAAIGALIGGGSLWLMGWTWEKLRGIEAMGLGDVKMMF
                     MAGAYLGWRLTILTLFVGVLSGSIIGVVLMARQRERNMQMLLPFGIFLGLGAIAALLF
                     GSQVVDWYAGQFR"
BASE COUNT          280 a          437 c          481 g          372 t
ORIGIN      
        1 aatgcgtggc cgggttttgg cgcgcagaag cagtttgcag ttgaacagac gcagcacgag
       61 tggatcttca gtctcgacgc ggacgaacga gtttcggatg aactgagaga ctcgatccag
      121 aagttgcgag gatcatctga gactgccgat ggttatgaaa tcgcgcggcg cacttactac
      181 cagcagcgct ggattcgcgg cggcggctgg tatcccgatc ggcagttgcg cttattccac
      241 cggaccacgg gaagctggaa gcaacgtcac attcacgagt cggtcgcgat gaacaacggt
      301 gcgcgtgtcg gcgtgctcga cggagattta cttcactaca cgtcgcccaa cgcagcgcat
      361 catcatcgtg tgattggcga gcgttacgcg ccgctggccg cgcagcagat gtatgaagaa
      421 ggacgacgga cgtcgatctt cagcgtcgct tccgcaggcc cggcggcgtt tatcagaagt
      481 tttattttga aaggcggctt tcgcgatggc tttgcgggtt tcacgatcgc gagcttcgcc
      541 gcgcatcacg cgttcttgaa acacttaatg ctttgggaaa aacaggccac agatcagacg
      601 gataaaaact aaatgccaga tttgagtcta gctcccccag cctttggtta cattcttgcc
      661 gcaatcttcg gcgccatcat cggcagtttt ctcaacgtcg tcattcatcg cgtgccgctg
      721 gaagaatcgg tcgtgtttcc caactcgcgc tgtccttcgt gcggtgcggt gatcgcgttc
      781 tacgacaaca ttccggtgat cagttggctg ctgctgcgcg cgaaatgccg cggttgccgg
      841 cagccgatct cgtttcgtta tccggcggtt gaactgctta cggccgcgct cttcgtcgcc
      901 gtcgcctggc acgatggaat tagcgtcgcg ttgccattcg atctgatctt cgtttcggcc
      961 ctgctcgcgc tcatcttcat cgacgccgaa cacatgatcc tgccaaacgt gatcacttat
     1021 ccgggtatgg tgtttgccgt cgtcgcgcgc atcgcgattc cgctgctgag cagcacgccg
     1081 cacttcgacg atctgccgtc gctatcgcag ggagcgtttg ccgacatgcc gaactgggtg
     1141 acgtcggttg cgggcgcggc gatcggcgcg ctgatcggcg gtggctcgct gtggctgatg
     1201 ggttggacgt gggaaaaact gcgcggcatt gaagcgatgg gcctcggcga cgtgaagatg
     1261 atgttcatgg ccggcgcgta tctcggctgg cgcctcacga tactgacgct cttcgtcggc
     1321 gtgttgagcg ggtcgatcat cggcgtcgtg ctgatggcgc ggcaacgcga gcgaaacatg
     1381 cagatgcttt tgccgttcgg catctttctc ggactcggcg cgatcgcggc gctgttgttt
     1441 ggttcgcaag tggttgattg gtacgccggt cagttcaggt aactccccaa cgatgaaata
     1501 ccgcagccgc ttccaatccg gtttgacgat gctgacgggg cttttcctgt tggcgacgct
     1561 gtttgccatt
//
LOCUS       DASWTX010000397         1743 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_178125, whole genome shotgun sequence.
ACCESSION   DASWTX010000397 DASWTX010000000
VERSION     DASWTX010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1743)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1743)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1743
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178125"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            259..>1743
                     /locus_tag="VGD38_06125"
     CDS             259..>1743
                     /locus_tag="VGD38_06125"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0727630.1"
                     /translation="MRKDISYAIRGLLKRPGFVAIAVVTLALGIGANTAIFSLVNAVL
                     LRSLPVERPGEVVSVAMRGKDDSMSAWSIPNFRDFRDRNEVLSGLLVYRFVPLSLSRG
                     GANERIWGFEVSGNYFDVLGVKAIKGRTFLPEEDKTPLSHPVAVLSYNSWQRRFGGDA
                     DIVGKDVLLNDHQFRVIGVAPEGFKGTEMVYTPEIWLPAAMMEWVEPGAKWLEDRNTR
                     NFFANGRLKPGVDERQAEASLNLLALQLAKEYPDTNEGQSIKIVPAGFLIPELRGAVV
                     SFTWVLMGAVGLVLLVTCTNLAGLMLARATDRKREIAIRLAMGANRLRLIRQLLTESV
                     LLSFVGGVAGVLLAFWMIEALLAFKPPIDFPLAFDVEVDWRVLLFSLGVSLLSGAVFG
                     LAPALQATRPALSQALRETSAQGGAARTRLRSVLVVAQIALSLVVLISAGLVVRTLQQ
                     LQTMNPGFDSQNGLTMSFDLGLQGYDRDHGQQFYRQLTERVKALP"
BASE COUNT          323 a          480 c          579 g          361 t
ORIGIN      
        1 cagagcccga accgggggcg cagccccttg gttcttaggg ttcgcttccg gcgaggcgta
       61 gcctcgccgc acatccgggg gcagagccca ggccaaaagt gcgccagagc tgaaaggcca
      121 aagtagcgag aggttaggag agaagggatt tttgcaagcg cgcgtgcgat ggggttgtga
      181 gaggccgaag tagcgagaac gttggagcag gaatcttttt aagtggcgtg agggaaacag
      241 aagcttagga ccaaagcaat gagaaaagac attagctacg cgatacgcgg gttactgaag
      301 cggccgggat tcgttgccat tgcggtggtt acgctggcgc tggggattgg ggcgaacacc
      361 gcgatcttta gtttggtgaa tgcggtgctg ctgcgctcgc tgccggttga aaggccgggc
      421 gaggtcgtct cggtcgcaat gcgcggcaag gacgattcga tgtccgcgtg gtccatcccg
      481 aacttccgcg acttccgcga tcgcaacgag gtgctctcag gactgctggt ctatcgtttc
      541 gtcccgctga gcttgagtcg cggcggcgcg aacgaacgca tctggggttt cgaggtttcc
      601 ggcaattact tcgacgtgct cggcgtgaaa gccatcaaag gccgcacgtt tcttcccgaa
      661 gaagacaaga caccactgtc gcatcccgtc gcggtgctca gttacaactc gtggcaacga
      721 cgcttcggcg gcgacgcgga catcgtcggc aaagacgtgc tgctcaacga tcatcagttt
      781 cgcgtgatcg gcgttgcgcc cgaaggcttc aagggaacgg agatggtcta cacgccggag
      841 atctggttgc cggcggcgat gatggagtgg gtcgagcccg gcgcgaagtg gctcgaagat
      901 cgcaacacgc gaaacttctt cgccaacggg cgtctcaaac ccggcgtcga cgaacggcag
      961 gcagaagcgt cactcaacct gctcgcgctg caactcgcga aagagtatcc cgacacaaac
     1021 gaaggacagt cgatcaagat cgtgccggcc ggttttctca ttccggagtt gcgtggcgcg
     1081 gtcgtgagtt ttacgtgggt gctgatgggc gccgtgggcc tggtcctgct cgtcacttgc
     1141 acaaacctcg cgggcctgat gctcgcacgc gcgaccgaca gaaagcgcga gatcgcgatc
     1201 cgtctggcga tgggcgcgaa ccgcttgcgt ttgattcgcc aactgctcac cgagagcgtg
     1261 ttgctctcgt tcgtcggcgg cgttgccggt gtgttgctcg cgttttggat gatcgaggcg
     1321 ttgctggcct tcaaaccgcc aattgatttc ccgttggcct ttgacgtgga agtcgattgg
     1381 cgggtcttgt tgttctcgct gggcgtgtcg ctgttgtcgg gcgcggtttt cggactggcg
     1441 cccgcgctgc aggcgacacg tcccgctctt tcgcaggctt tgcgagaaac atcggcgcaa
     1501 ggcggcgcgg cccgcacgcg tttgcgcagt gtgctggtcg tggcgcagat cgcgctctcg
     1561 ctcgtggtcc tgatctcggc cggactggtc gtgcgcacgt tgcagcaact gcaaacgatg
     1621 aatcccggtt ttgattcgca aaacggcttg acgatgtcgt tcgatctcgg tttgcaaggc
     1681 tacgacaggg atcacggaca acagttttac cgccaactca ccgagcgcgt gaaagcgttg
     1741 ccg
//
LOCUS       DASWTX010000398         1847 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_242880, whole genome shotgun sequence.
ACCESSION   DASWTX010000398 DASWTX010000000
VERSION     DASWTX010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1847
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_242880"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..696
                     /locus_tag="VGD38_06130"
     CDS             <1..696
                     /locus_tag="VGD38_06130"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0727631.1"
                     /translation="QNDFAQFFDSRETYERYGIPWRRGAIFIGPPGNGKTHTVKALIN
                     YLQRPCLYVRNFTGSGSVQGNMSEVFKRARRQPTIVVLEDLDSMINNATRAFFLNELD
                     GFRVNTGVVVLATTNHPEKLDTAILDRPSRFDRKYTFDLPGEAERLAYVEKWNRELQP
                     ELRLSNHVAPTIVNETDGFSFAYLKELFVASLAQWMSDAGKTPMENVLLAQIALLRGQ
                     MNSNQQKKKAKSA"
     gene            complement(693..1469)
                     /locus_tag="VGD38_06135"
     CDS             complement(693..1469)
                     /locus_tag="VGD38_06135"
                     /inference="COORDINATES: protein motif:HMM:NF025086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4159 domain-containing protein"
                     /protein_id="HEY0727632.1"
                     /translation="MLVTALLVPSLAQRPFDDFRRRPTSRAADAGPSFGEFTFVRTIY
                     ESPFRGYGRRGYGGGTWTTDYPEADNNFIVGLREWAGTNLKIAPRPEALEILDDRIFD
                     YPILYIVEPGFMDLTNEQAARLREYIMRGGFIFLDDFWGEYEWQNVQEQFQRIVPEYE
                     IKDLPLSHPLFHAYLDVEEVVQVPNVYNASRGITSEKGGVVPHYMGVENKNGRLVAFI
                     ARNCDLGDAWEWINEPSYPVKYGLPAYKVGINVVIYAMSH"
     gene            complement(1572..>1847)
                     /locus_tag="VGD38_06140"
     CDS             complement(1572..>1847)
                     /locus_tag="VGD38_06140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727633.1"
                     /translation="TGMGAGRLDEVIEELKRLADGKMDGDAATASYLKNEVVEPLRQL
                     ELELSRQLQQQSNRTNLRLRDEGAAPEKYRKAVEEYYRRLSGARQRQ"
BASE COUNT          368 a          514 c          573 g          392 t
ORIGIN      
        1 caaaacgatt tcgcgcagtt cttcgactcg cgtgagactt acgaacgtta cggcattccg
       61 tggcggcgcg gcgcgatctt cattggtcca cccggaaacg gaaagaccca cacggtaaag
      121 gcgctgatca attacctgca gcggccgtgc ctctacgtgc gcaatttcac gggcagcgga
      181 agcgtgcagg gaaacatgag cgaagtcttc aaacgcgcgc ggagacaacc gactatcgtc
      241 gtgctggaag atctcgactc gatgatcaat aacgcgacgc gtgcgttctt cctgaacgag
      301 ctcgacggtt tccgcgtgaa cacgggcgtg gtcgtcttgg cgacaaccaa ccacccggag
      361 aagctcgaca cggcgatcct cgatcgtccg agccgcttcg atcggaagta cactttcgat
      421 ctgcccggtg aagccgagcg tctggcgtac gtcgaaaagt ggaaccgtga gctgcaaccg
      481 gagttgcgcc tctcgaacca cgtcgcgccg acgatcgtca acgagacaga cgggttctcg
      541 ttcgcttacc tgaaggagct gtttgtggct tcgctggcgc agtggatgtc tgacgcgggc
      601 aagacgccga tggagaacgt gctgctcgcg cagatcgcgt tgctgcgtgg acagatgaac
      661 agcaatcagc agaagaagaa ggcgaagtca gcttagtgac tcatcgcgta gatcacgacg
      721 ttgatgccga ctttgtaagc gggtagtccg tacttcacgg ggtagctggg ttcattgatc
      781 cattcccacg cgtcgccgag atcgcagttg cgcgcgatga aggcgacgag gcggccgttc
      841 ttgttttcaa cgcccatgta gtgtggcacc acgccgcctt tttccgacgt gatgccgcgc
      901 gaggcgttgt acacgttcgg cacctggacc acttcttcga cgtcgaggta cgcgtgaaag
      961 agcgggtggc tcagcggtag atctttgatc tcgtattcag ggacgatcct ctgaaactgt
     1021 tcctgaacgt tttgccactc gtactcgccc cagaagtcgt cgaggaagat gaagccgccg
     1081 cgcatgatgt actcgcgcag gcgcgcggct tgttcgtttg tgagatccat gaagccgggt
     1141 tcgacgatgt aaaggatcgg gtagtcgaag atgcggtcgt cgagaatctc gagtgcttcg
     1201 gggcgcggcg cgatcttgag gttggtgccg gcccattcgc gcaggccgac gatgaagttg
     1261 ttgtcggctt cggggtagtc ggtggtccat gtgccgccgc cgtagccgcg tcggccgtag
     1321 ccgcggaagg gcgattcgta gatcgtgcgc acgaaggtga actcgccgaa cgacggaccg
     1381 gcgtccgccg cgcgcgacgt tggtcgccgg cggaagtcgt cgaacggacg ctgcgcgagg
     1441 gatggaacca gcaatgcggt aacgagcaac gctggaaaaa ctcccagttt aagaaacctt
     1501 gtaaacataa cgcttagttc agagttcaag ctttagcttg tccggcaacc tgaaggttga
     1561 actcaaaacg tctattgtct ttgtctcgcg ccggagagtc tccggtaata ctcctcgact
     1621 gccttgcgat acttctcggg tgcggcgcct tcgtcgcgca ggcgcaggtt ggtgcggttg
     1681 ctttgttgtt gaagttgacg gctcaactcc agctccaact gtcgcaaagg ctcaacgacc
     1741 tcgttcttga gatatgaggc cgtcgcagcg tcgccgtcca tcttgccgtc ggcaagacgc
     1801 ttgagctctt cgatcacttc gtcgagacgt ccggcgccca ttccggt
//
LOCUS       DASWTX010000399         3070 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_4540, whole genome shotgun sequence.
ACCESSION   DASWTX010000399 DASWTX010000000
VERSION     DASWTX010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3070
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4540"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..279
                     /locus_tag="VGD38_06145"
     CDS             <1..279
                     /locus_tag="VGD38_06145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727634.1"
                     /translation="AFEWTSGTGHIHADLVLVNLLGKLPEEALTIGCRLREHSKYDGH
                     TPLVVMPEKVPQDLQGTDEKVSDLEWICYYEDIEQLKRLLTRLINKNT"
     gene            408..770
                     /locus_tag="VGD38_06150"
     CDS             408..770
                     /locus_tag="VGD38_06150"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0727635.1"
                     /translation="MRTRRRILAVDDHADMCGLITAILDGYEVVSAHSKAEAMRKAAR
                     NVFDLYLLDYHLPDGTGIELCLLIRNIDQVTPILFVTNSHSLTKEQIAAVGAHGLVSK
                     DDLPDGLLRSVCRVLEQR"
     gene            1175..3010
                     /locus_tag="VGD38_06155"
     CDS             1175..3010
                     /locus_tag="VGD38_06155"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family peptidase"
                     /protein_id="HEY0727636.1"
                     /translation="MKTFLNYSIALSITALLLLPFSAGAQHGPTPADLSPQKNARPAQ
                     SQRTLQPKAKFNRVENPIPNKYIVILNDDVAPGRGAGSARSAQVRSAAANLTQQYGGR
                     VGFTYDALKAFSVDTLNEQAAIALSQNPQVKFVEQAGMMKLVDVQSNPPWGLDRIDQA
                     GPVGTVTNGITSGTYVHNANGSGVTAYVVDGGVRTSHSQFGGRAAIAADYIGTDGCTT
                     TSTNDDCNGHGTHVAGTIGGSTFGVAKGVTIRSVKVCNSTGSCPLDAIIAGMNYVMNE
                     HYINPSVPKVANMSLGGSPSDSLDYSVFTAIDAGVTVVVAAGNSGWFAGSFSPARVAP
                     AITVGASGPTDQGAQGSGVFFSNFGPPVDVWAPGEGVLSAWFNNDNDTNIISGTSMAS
                     PHTAGAVALYLQGRTATDWCAYFPIGNASPFIGGAISTCPDRVAQFIKSNTSLNKLTT
                     INANHGSPNRLLFTGSLPATTNPIDNQRFFVWQQFADFLNAEPNENGLDSWTSTITGT
                     CGTGFNDNTSCTHAKRIDVARAFFVSAYPTLFNSGGTQLTDNAAFVHKCYEVFLRRSV
                     SSSDGGFQFWLNDLNSYGSPANQNGINHLIDAFLLSIEYRQRFGQ"
BASE COUNT          740 a          904 c          765 g          661 t
ORIGIN      
        1 gcttttgagt ggacgagcgg gaccggccat atccacgccg acctagtttt agtcaatctt
       61 ttaggcaaac ttcccgaaga agctttaacc atcggatgtc gcttgcgcga gcattccaaa
      121 tatgacgggc acacgccgct cgtcgtaatg cctgaaaagg ttccgcagga tctgcaaggt
      181 actgatgaaa aagttagtga tcttgagtgg atttgttatt acgaagacat tgagcagtta
      241 aagcgcttgc tcacacgcct tattaacaaa aatacttaac cctcgctgca ttaaattgaa
      301 atggaacgcc ccctcggatc agaacgtctt gtattctccg gcccctgcgt gacactcgga
      361 atgcaataag tcctgtgtag atcgatcaag taattaggta atagcgaatg cgtactagac
      421 gccgcattct agcggtcgat gatcacgccg acatgtgcgg cttgatcacc gctatactcg
      481 acggttacga agtagtgtcg gcccacagca aggccgaagc aatgcgaaag gcagcacgca
      541 atgtgtttga cttgtatttg ctcgattatc atctgccaga tggtaccggc atagaattgt
      601 gcttgctgat ccgaaacatc gatcaggtaa caccgatact gtttgtgact aactctcaca
      661 gccttacgaa agaacaaatt gccgccgtcg gcgctcatgg attggtgtca aaagacgacc
      721 tcccagatgg tctgttaaga agtgtttgcc gcgtactcga gcaacgctaa taatcattga
      781 cgtaatgttg atgattcata ttctttggac agacggatcg gtgctaatct acatacacgc
      841 ttatgaagat gctggcctga gatttgaaca ggattacccg cattagcgcg gctgcctttg
      901 cacagttagg tcggaattcg acttgccgta ctaaaccgcc tctcgcaact gttgcaagaa
      961 actgagcatt tctgccgggg gcgacaggaa aaagttgcga agattgtccc gtatgctccg
     1021 ccattaaatc tcgcagtcag caatgcccaa agaccagtcc ccaaacggct ggtcttttgt
     1081 attctcccgg cttaaacttc ccgcgctctc cggctcgctg acaataaaca ttcagctccc
     1141 ctcaacactc tgaacctcta aggagaactc tgtcatgaaa acgttcctga actactctat
     1201 cgccctgagc atcactgctc tgttgctact tcccttctcc gccggagcac agcatggtcc
     1261 aacacctgcc gacctctcgc cgcagaagaa tgcgcgaccc gcacaatcac aacgaacact
     1321 ccaacccaaa gcaaaattca atcgtgtcga aaacccgatt cccaacaagt acatcgtgat
     1381 cctgaacgat gacgtcgctc ccggacgtgg cgcgggcagc gctcgcagcg ctcaagtcag
     1441 gtccgcagcc gcgaatctca cgcagcaata cggcggacga gtcggtttta cttacgacgc
     1501 gctgaaagca ttctccgtcg atacgctcaa cgaacaggcg gccatcgcgc taagccaaaa
     1561 tccgcaggtt aaattcgtcg aacaagccgg catgatgaaa ctggtcgacg tgcaatccaa
     1621 tccgccgtgg ggtctcgatc gtatcgatca ggcaggacca gtgggaacag taactaacgg
     1681 catcacgagc ggaacctacg tccacaacgc aaacgggtcc ggcgttaccg cttacgtcgt
     1741 ggacggcggc gtcagaacca gtcactcgca attcggcgga cgcgctgcaa tcgccgcgga
     1801 ttacattggc actgacggct gcaccacgac ctcaaccaac gacgactgta acggccacgg
     1861 cacccacgtc gccggcacaa tcggcggctc gacgttcggc gtcgccaaag gcgtgactat
     1921 ccgttccgtg aaggtttgta attccacggg tagttgtcct ctcgacgcca tcatcgcggg
     1981 catgaattac gtgatgaacg aacactacat aaacccgtca gtgccgaagg tggccaacat
     2041 gagtctgggc ggttcaccca gcgactcgtt ggactactcg gtatttacag ccattgacgc
     2101 aggcgtaacc gtcgtggtcg cggccggcaa tagcggctgg tttgccggca gcttctctcc
     2161 ggcgcgtgtt gcgccggcga taaccgtcgg cgcttccggc ccaaccgacc agggcgcgca
     2221 gggcagcggc gttttctttt ccaacttcgg accgccggtc gacgtctggg ctccgggaga
     2281 aggcgtgctc tccgcgtggt tcaataacga caacgacacc aacatcatct cgggaacctc
     2341 gatggcgtcg ccgcacaccg caggcgcagt tgcgctgtac ctgcaaggtc gaaccgcaac
     2401 cgactggtgc gcttatttcc caatcggcaa cgcttcaccg ttcatcggcg gcgcaatttc
     2461 cacctgtccg gatcgcgtcg cccagttcat caagagcaac acgagtctga acaagttgac
     2521 caccatcaac gccaaccacg gctctccaaa ccggctgctc tttacgggct cgctgccagc
     2581 cacgacaaac ccgatcgata atcaacggtt cttcgtctgg caacagtttg cggatttttt
     2641 gaacgctgaa ccgaatgaaa acggactcga ttcgtggacc agcacaatca ccggcacttg
     2701 cggcacgggc ttcaacgaca acacgagctg cacgcatgca aaacggatcg atgtggcgcg
     2761 cgccttcttc gtctcagcgt atccaacgct attcaacagc ggcggcacgc aactcaccga
     2821 caatgccgcc ttcgtacaca agtgctacga ggttttcctg cgccgatccg tctccagttc
     2881 tgacggcggg ttccagtttt ggctaaacga tttgaacagc tatggcagtc ccgctaatca
     2941 aaacggaatc aaccacttga tcgacgcttt tctgctctcg atcgagtatc gccaacgctt
     3001 cgggcagtaa gggaaaacca cgagtacggc aaattatccc cggctcctat tgacccggcg
     3061 gatttttcga
//
LOCUS       DASWTX010000400         2680 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_71446, whole genome shotgun sequence.
ACCESSION   DASWTX010000400 DASWTX010000000
VERSION     DASWTX010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2680
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71446"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1115
                     /locus_tag="VGD38_06160"
     CDS             <1..1115
                     /locus_tag="VGD38_06160"
                     /inference="COORDINATES: protein motif:HMM:NF015380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="clostripain-related cysteine peptidase"
                     /protein_id="HEY0727637.1"
                     /translation="TEMKQANIGKHVNVIAQFDPSDPHLSTHRYVIQRRGRNKSFRRD
                     IVDQACYFDDGEIKFGKESACAETLAADRKRERALRLATWSEAYLTGSPQREPLNIYD
                     TDSGSPVTLYNFISFCLQEYPADHYLVVLSGHAAGTERDYLLKDESSACSLTFNEMKR
                     VFERVRKDLGRPLDIVGMDTCLMSMAEICYELRGSAEIVVGCESFSPASGWPYREVLE
                     RLANDFVSPCLPPGESVVEAAAKAIVKEYVNYYSNYWIAGLSVTQSALNVCKVEKLHE
                     VINELAARMEKQLIAERNAPPSNGGGRQFQDALLLAHWEAQSYNGEQFVDLYDFCDCL
                     QTRLGEGPIAKQCQVVKDFLSTEFVLASCYSGAIYQ"
     gene            1125..1517
                     /locus_tag="VGD38_06165"
     CDS             1125..1517
                     /locus_tag="VGD38_06165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727638.1"
                     /translation="MSLYFPWSYVALSYWNLDFVKEAQGSGWGSFLKTYTLLTRRAPR
                     GMDSQSQLSQALNARIANSLSSEPVDDEHMSLYRMGIDRMGIDRMNTGAARNYIHSMR
                     NPPNVFFPDGCIRKRKSALLTQEMLRLR"
     gene            1562..>2680
                     /locus_tag="VGD38_06170"
     CDS             1562..>2680
                     /locus_tag="VGD38_06170"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0727639.1"
                     /translation="MPILLLFFAPTLLDHNAIAHNSPATAESVFADAVRLRSEQRAAS
                     NREAIDKFREAAGLWRAAGKLDDATIALRNAGELLQLLAQTSAAKYAYEDALSLTKQT
                     RNQTEEARVHNGLAYLHFIAGNTTKAQQHALAALKIGKELADRTIEATALSNLGETFF
                     VLDNLVKAQEHQQQSLAIFRELNNQRGQAIALVALGYYYANMAQPAEALKSCSDGLAL
                     ARSAKDLEAETLALIANASIKRKLGDKEEALNAYKSAKSLAELTGDRTSQAQVHAGIG
                     AVSIDMGDYPAALTHTQEAVKIFTANGQTWGAAENEIGLGIIHHALGENDKALANLNE
                     AVASFRAERMHRLEAITLRTIGLIYRAQGDTQRALASFQ"
BASE COUNT          611 a          783 c          780 g          506 t
ORIGIN      
        1 tcaccgagat gaaacaggcg aacattggga agcatgtgaa cgtcatcgcc caattcgatc
       61 cgtccgaccc tcatctctca acacaccggt acgtgatcca gcggcgcggg agaaataaaa
      121 gtttccgccg cgacatcgtc gatcaggcct gttacttcga cgacggcgag atcaagtttg
      181 gcaaagagag cgcctgcgcc gagacactcg cggcggatcg caaacgcgag cgggcgcttc
      241 gccttgctac ctggagtgaa gcgtacctga ccggctcgcc gcagcgggaa ccgctcaaca
      301 tctacgacac ggacagcggt tcgccggtga cgctctacaa cttcatcagc ttctgcctgc
      361 aggagtatcc ggccgatcat tacctcgtag tgctgtcggg ccatgcagcc ggcaccgagc
      421 gcgactacct gctgaaagat gagagcagcg cctgctcgtt gacgttcaat gagatgaaac
      481 gcgtcttcga gcgtgtgcga aaggatctcg ggcggccgct ggacatcgtc ggcatggaca
      541 cgtgcctgat gagcatggcc gagatttgtt acgagttgag gggttcggcg gagattgtcg
      601 tcggttgtga gagttttagt ccggcgtctg gttggccgta tcgcgaagtg ctcgaacgac
      661 tggcgaatga tttcgtgagc ccctgcttgc cgcccggaga atccgtcgtc gaagcagcgg
      721 ccaaagcgat cgtgaaggag tacgtcaatt actactcgaa ctactggatc gcggggctct
      781 cggtgacgca gtcggccttg aacgtgtgca aggtggaaaa gctgcatgaa gtgattaacg
      841 agctggccgc gaggatggag aaacaattaa tcgcggaacg caacgcgcca ccctcgaatg
      901 ggggtggacg gcagtttcag gacgcgctat tgctggctca ttgggaagcc cagtcgtaca
      961 acggcgaaca gttcgttgac ctttacgact tttgtgactg cctccagacg cgactcggcg
     1021 agggtccgat tgccaagcag tgccaggtcg tgaaggactt tctcagcaca gagtttgtgt
     1081 tggcgtcgtg ctactccggc gcgatttatc agtagtccta cggtgtgtcg ttgtactttc
     1141 cgtggtcgta cgtggcgctg agctattgga acctcgactt cgtcaaagaa gcccagggct
     1201 cgggttgggg aagtttcttg aagacttaca cgcttttgac gcgccgggcg cctcgcggca
     1261 tggattccca aagccaactc agccaggcgc tgaatgccag gattgctaac tcgttgagtt
     1321 cggaaccggt ggacgacgag cacatgagcc tctaccgcat gggtattgac cggatgggca
     1381 tcgaccggat gaataccggc gcggcgcgga actacatcca cagcatgcgt aacccgccaa
     1441 atgtgttctt tcccgacggg tgcattcgca agcgcaagag cgcgttgtta acccaggaga
     1501 tgcttcgttt gcgatgacgg gaccgggagc aaaaaaccga ttggggtcaa aacggctttg
     1561 cgtgccgatc ctgcttctgt tttttgcgcc aacgcttctc gatcacaacg cgatagccca
     1621 caattcgcct gcgacagcag agtcggtgtt cgccgatgct gtgcgtttgc gctcggaaca
     1681 acgcgcggcc tcgaaccgtg aagcaatcga caagtttcgt gaagccgccg gactctggcg
     1741 cgcggcgggc aaactcgacg acgccaccat cgctttgcgc aacgcgggcg aactcctgca
     1801 actcctcgcc caaacatctg ccgcaaagta tgcctacgaa gacgcgctct cgttaaccaa
     1861 acaaactcgc aaccaaaccg aagaggcgcg cgtccacaac ggtctcgctt atctccactt
     1921 catcgcgggc aacacaacca aagcccaaca gcacgctctg gcggcactga aaatcggaaa
     1981 agaactcgcc gatcgaacga tcgaggcaac cgccctcagc aatctcggcg aaacgttttt
     2041 cgtgctcgac aatctcgtga aggcacagga acaccaacag caatcgcttg caatcttccg
     2101 cgagctgaac aatcaacgcg ggcaagccat cgccctagtc gcactcggct actactacgc
     2161 caacatggcc caacccgccg aggcgctaaa gtcgtgcagc gacggcttgg cgctggcgcg
     2221 ttccgcaaaa gacctggaag cggaaactct cgcactgatc gccaacgcca gcatcaagcg
     2281 caaactcggc gataaagagg aagcgctcaa cgcttataaa tcggcgaaga gtcttgccga
     2341 actcaccggc gacaggacgt cgcaagcaca ggtgcacgcc ggcatcggcg cggtttcgat
     2401 cgacatgggc gattatccag cggcgctcac gcacacgcag gaagccgtca agatattcac
     2461 cgccaacggc caaacgtggg gcgcggctga gaacgagatc ggcctcggga tcattcatca
     2521 cgcgttgggc gagaacgaca aggccctcgc gaatctaaac gaagccgtcg cttcgtttcg
     2581 tgctgagcgg atgcatcgtc tcgaagcgat aacgctgcga accatcggat tgatttaccg
     2641 cgcgcagggc gacacacaac gcgcgctcgc atcgtttcaa
//
LOCUS       DASWTX010000401         1862 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_310330, whole genome shotgun sequence.
ACCESSION   DASWTX010000401 DASWTX010000000
VERSION     DASWTX010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1862
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_310330"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..610
                     /locus_tag="VGD38_06175"
     CDS             <1..610
                     /locus_tag="VGD38_06175"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY0727640.1"
                     /translation="GVIGPNGAGKTTLFRMITGQEQPDKGTIRIGETVSLAYVDQSRT
                     LDPDKSIWEEISGGEDMLKLGNREVNSRAYVARFNFAGSDQQKKVGMLSGGERNRVHL
                     AKMLKEGANVLLLDEPTNDLDVNTLRALEEALENFAGCAVVISHDRWFLDRIATHMLA
                     FEGDSKVMWFEGNYSEYEADRKARLGAAAETPHRIKYRQLTR"
     gene            607..1413
                     /locus_tag="VGD38_06180"
     CDS             607..1413
                     /locus_tag="VGD38_06180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727641.1"
                     /translation="MKTKPRFLHTILLEENRGLLLDIVVFFLNLFLMQWLTGYALELF
                     RYANEDDQLAQFVLLTGCIAMWILPAAGAVLKRWHFHQRLKDEEQKIDLDAHATGCLF
                     NPIFYFCLNLVLMSAIVTGLGRFLFGERLLENGALFLPLIFGGLFCTIVQTYLIYRYF
                     SRPQKPPKYEFLRRPESETLGDVCIFVNMILFQIVWNLLNFAGLGGPSGVVEFLGRLF
                     FLCFLALLIYFPPRMFYLAEDINRGRTWIMMLVANSPVIVRLLIGTKEWS"
     gene            1443..>1862
                     /locus_tag="VGD38_06185"
     CDS             1443..>1862
                     /locus_tag="VGD38_06185"
                     /inference="COORDINATES: protein motif:HMM:NF016184.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur transferase domain-containing protein"
                     /protein_id="HEY0727642.1"
                     /translation="MKIATIIFSVLVFVSPVLAQQQEATPIRNFLRVNKEFCTGGQPR
                     LEHLEQLKAEGVKSIINLRQPSEHRAAEEEAKAKELGLRYFNIPVVFANPKDEQVDEF
                     LKITDDPENRPVFIHCTAAIRVGAFWLIRRVVRDGWKF"
BASE COUNT          407 a          480 c          532 g          443 t
ORIGIN      
        1 cggtgtgatt ggaccaaacg gcgccggcaa gacgacactg tttcgcatga tcacaggcca
       61 ggagcaaccg gacaaaggca cgattcgcat tggtgagact gtgtcgctgg cctacgtcga
      121 tcagagccgg acgctggatc cggacaagtc gatttgggaa gagatcagcg gcggtgaaga
      181 catgttgaag ctcggcaacc gcgaggttaa ttcgcgtgct tacgtcgcgc ggttcaactt
      241 cgccggttcg gaccagcaaa agaaagtggg catgctgtcg ggcggtgaac gcaatcgcgt
      301 gcatctcgcg aagatgttga aggagggcgc caacgttctg ctgctcgacg agccgaccaa
      361 cgatctcgac gtcaacacac tgcgcgcact ggaagaagcg ctggaaaact tcgccggctg
      421 cgcggtcgtg atttcacacg atcgctggtt tctcgatcgc atcgccacgc acatgctcgc
      481 gtttgaaggc gacagcaaag tgatgtggtt tgaaggaaac tattccgagt acgaagccga
      541 tcgcaaagcg cggctcggcg cggcggctga aacgccacac cgcatcaagt accgccaact
      601 gacccggtga aaaccaaacc cagatttcta cacaccatac tgctggaaga gaatcgcggg
      661 ctgttgctcg acatcgttgt gttctttctc aatttgtttc tgatgcaatg gctgacgggc
      721 tatgcgctcg aactgtttcg ctatgcgaat gaagacgatc aactcgcgca gtttgtctta
      781 ctgacgggtt gcatagcgat gtggatcttg cccgcggcgg gagcggtgtt gaagcgttgg
      841 cacttccatc aacgtctgaa agacgaagag caaaagatcg atctggatgc acacgcgaca
      901 ggctgtctgt tcaatccgat cttttacttt tgtctgaatt tggtgctcat gtcggcgatc
      961 gtaactggcc tgggccgatt tttgtttggt gaacgattgc tggagaacgg cgcgcttttt
     1021 cttccgctga tctttggcgg tctgttctgc acgatcgtgc agacgtatct catctatcgc
     1081 tacttctcac ggccacagaa gcctcccaaa tacgagtttc tgcgccggcc tgaaagcgag
     1141 acactcggcg acgtttgtat ctttgtgaac atgatcctgt ttcagattgt ctggaacttg
     1201 ctgaactttg ctggactcgg tggaccatcg ggtgtagttg agtttttggg aaggcttttc
     1261 ttcctgtgtt tcctcgcgct gctgatctat tttccaccgc ggatgtttta tctggctgaa
     1321 gacatcaacc gcgggcgcac gtggatcatg atgctggtgg caaactcgcc cgtgatcgtg
     1381 aggctgctaa tcggcacgaa agaatggagt taaatatgaa gtgttgtcgt aatatatcgc
     1441 gcatgaaaat cgccaccatc atcttctccg ttctcgtctt cgtttcacct gtcttggccc
     1501 agcagcagga agcgacgccg atcagaaact tcctgcgcgt gaataaggag ttctgcaccg
     1561 gcggccagcc gcgcctcgaa catctcgaac agctcaaagc cgagggcgtg aagtcgatca
     1621 tcaacctgcg ccaaccgagc gaacatcgcg cggctgaaga ggaagcaaag gcgaaggagt
     1681 tgggcctgcg ctacttcaac atccccgtcg tctttgcaaa tccgaaggac gagcaggttg
     1741 atgagttttt gaagatcact gacgatccgg aaaaccgtcc ggtgtttatt cactgcaccg
     1801 ctgcgattcg cgtcggcgcg ttttggctga tcaggcgtgt tgtgcgcgat ggttggaaat
     1861 tc
//
LOCUS       DASWTX010000402         2142 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_353910, whole genome shotgun sequence.
ACCESSION   DASWTX010000402 DASWTX010000000
VERSION     DASWTX010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2142
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_353910"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..905)
                     /gene="xerD"
                     /locus_tag="VGD38_06190"
     CDS             complement(<1..905)
                     /gene="xerD"
                     /locus_tag="VGD38_06190"
                     /inference="COORDINATES: protein motif:HMM:NF001399.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009009 - site-specific recombinase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HEY0727643.1"
                     /translation="MKRDFIKEFLTYIQVEKGLAQHSIASYQRDLTRLQTWATQNRKD
                     VLELTRADLRKWIASLSREGLAPTSVARAVSATRGFYKFLMLDGHIKRHPAEDLDTPQ
                     RFAYLPKFLTEEEINRLLAAPDINTLDGIRDRTILEVMYATGLRVSEMVNLKQADIDL
                     LAGLLVCHGKGSKERRVPLGKSAIHWLQQYAAAKAGYGKQTLPHVFVHRGKPFTRHIA
                     WSMIKRHAERAGIKGVSPHTLRHSFATHLLQHGADSRSVQALLGHSDISTTQIYTHIT
                     DMHLRSAYDRHHPRARMKTGSRDVQ"
     gene            complement(902..>2142)
                     /locus_tag="VGD38_06195"
     CDS             complement(902..>2142)
                     /locus_tag="VGD38_06195"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0727644.1"
                     /translation="ATLAMAVDSVRGHKFRSFLSVLGIVIGVMTAICIASILTGLRQN
                     IVAMIEEYGTNNIYAFHLSTGPRTGEDRSERTRKPLTVADAETIKTQAPAVEDVAWVA
                     PNVGYGGGPFDDNITYQGRNYRWGNTQGVSANYADVYNIVLKEGRFITESDDSQRSNV
                     MVIGVNAAEALFPGMDQVAGAQVRMGGYNFEVIGVLEKRKAGFFGENEEDNAVYIPFR
                     TAQKIAPAKGYLLLVIRGRSGQVQEALTQSEEILRRRRQVKFDEPNNFDIKPADKFIE
                     QFDSITAMVGLVAIAISSLGLLVGGIGVMNIMLVSVTERTKEIGVRKAIGARRRDIVR
                     QFLFEAMMLTFLGGVLGVLLAVGASQLLMLLFPSLPAAIPTWAVVSGLTVSIGVGLIF
                     GVWPARKASRLDPIECLRYE"
BASE COUNT          437 a          652 c          589 g          464 t
ORIGIN      
        1 tcctgaacat cccgcgatcc tgtcttcatg cgagcccgcg gatgatgccg atcgtaagcc
       61 gagcgcaaat gcatgtcagt aatgtgcgtg tagatctgcg tcgtcgagat atcgctatgg
      121 cccaacagcg cctgcaccga acgcgaatca gcgccgtgtt gcaacaggtg cgtcgcaaag
      181 ctgtgacgca acgtgtgcgg cgaaacgcct ttgattccag cacgctccgc atggcgcttg
      241 atcatggacc atgcgatatg acgtgtgaac ggcttcccgc gatgcacgaa cacatgcggc
      301 aacgtctgct ttccgtaacc agctttcgcc gccgcgtact gttgcagcca atgaatcgcg
      361 ctcttgccga gcggcacgcg ccgttccttg ctccctttgc cgtgacagac caaaagccca
      421 gcgagcagat caatgtcggc ctgtttcaag ttcaccattt ccgaaacacg caaacccgtc
      481 gcatacatca cctctaggat cgtgcgatcg cgaatgccat cgagcgtgtt gatgtcgggc
      541 gcggcgagca ggcgattgat ctcttcctca gtcagaaact tcggcaggta agcaaaacgt
      601 tgcggcgtgt cgaggtcttc cgcgggatgg cgcttgatgt gaccgtcgag cattagaaac
      661 ttgtaaaacc cacgcgtcgc actgaccgct cgcgcgacgg acgtcggcgc gagtccttcc
      721 cgcgaaagac tcgcgatcca cttgcgcaag tcagcgcgcg tgagttcgag cacgtctttt
      781 ctgttttgcg tggcccaggt ttgcaggcgc gtgagatctc tttggtaact ggcgatgctg
      841 tgttgcgcca gccccttttc aacctggatg taggttagaa attcctttat gaagtcgcgc
      901 ttcattcgta acgcagacac tcgatcggat cgagccgcga tgctttacgc gccggccaaa
      961 cgccgaagat caatcccacg ccgatcgaaa cggtcagacc cgaaaccacc gcccaggtgg
     1021 gaatcgccgc cggcaggctc ggaaacagca gcatcagcag ttggctcgcg cccactgcca
     1081 gcagcacgcc cagcacgccg cccaaaaacg tcaacatcat cgcctcaaac agaaactgac
     1141 gcacgatgtc tctgcgtcgc gcgccgatgg ccttgcgcac gccaatctct ttggtccgtt
     1201 cggtgacact cacgagcatg atgttcatca caccgatgcc gcccaccaaa agccccagac
     1261 ttgagatcgc gatggcgacc agcccgacca tcgcagtgat gctatcaaac tgttcgataa
     1321 atttgtcggc tggtttgatg tcgaagttgt ttggctcgtc aaatttgacc tggcggcgcc
     1381 gccgcaggat ctcttctgac tgcgttagcg cttcctgaac ttgtcccgat cggccgcgaa
     1441 tcacgagcaa caggtaacct ttcgcgggcg cgatcttttg cgcggtgcga aacggaatgt
     1501 agaccgcgtt gtcttcttcg ttctcgccga agaacccggc tttgcgtttt tccagcacgc
     1561 cgatgacttc gaaattgtag ccgcccattc gcacttgtgc gccggcgacc tggtccatac
     1621 cgggaaacaa tgcttccgcg gcgttcacgc cgatcaccat cacgttcgag cgctgcgaat
     1681 cgtctgactc ggtaatgaag cggccttctt tcaagacgat gttgtaaacg tcggcatagt
     1741 tcgccgaaac gccttgcgtg tttccccaac ggtagttacg gccctggtaa gtgatgttgt
     1801 cgtcaaacgg accgccgccg taaccgacgt ttggagcgac ccacgccacg tcttcaacgg
     1861 cgggcgcctg tgttttgatc gtttccgcgt cagcaactgt cagcggtttg cgtgtgcgtt
     1921 cagaacgatc ttcgcccgtg cgtggtccag tcgagaggtg aaacgcgtag atgttgttgg
     1981 tgccgtactc ctcgatcatc gccacgatgt tttgccgcaa gccggtgagt atcgacgcga
     2041 tgcagatcgc ggtcatcacg ccgataacga ttccgagcac ggacagaaag ctgcgaaact
     2101 tgtggccgcg aacactgtcg acggccatcg ccagcgtggc ac
//
LOCUS       DASWTX010000403         4221 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_397238, whole genome shotgun sequence.
ACCESSION   DASWTX010000403 DASWTX010000000
VERSION     DASWTX010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4221)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4221)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4221
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397238"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..778)
                     /locus_tag="VGD38_06200"
     CDS             complement(<1..778)
                     /locus_tag="VGD38_06200"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY0727645.1"
                     /translation="MSNETVQEMFSRMAAEFGPRVAIDGPGRQVYYAELEAESNRLAN
                     FLLDGGVRKGTMVGLLSDDPRWIITGILGVLKAGGVFIPLDPSFPDGRLHVMSEQVKP
                     QWYVTETRHLEKLGRLRVEGNEKAQVVCLDQNSANDYAGLEVMTSFDEYQQTSAPAVP
                     GDPDAPCSIYFTSGSTGKPKAILGRLKGIDHFVRWEIEAVGAGPGTRVSQLASPSFDG
                     FLKDAFVPLCSGGVVCIPESRDVVLDAGRLADWLDTERVEV"
     gene            complement(780..1754)
                     /locus_tag="VGD38_06205"
     CDS             complement(780..1754)
                     /locus_tag="VGD38_06205"
                     /inference="COORDINATES: protein motif:HMM:NF014698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HEY0727646.1"
                     /translation="MIKTGLLDPEHSVPFVVEYQSSNGRPESGLLVSWYQDNRDYVEQ
                     KLTEHGAILFRNFDIGTPAAFARLTRTLAPGLLDCLDDNGPRTKITSGIYTSTEYPAE
                     YQLSMHSEYAYTHKFPARLFFCCIVEPGKGGQTPLADNRKILKKLDRAVVEEFRTKRV
                     KYLRNLHGATGFGLSWQATFQTTDRSLVERYCREMLIDYEWKADGGLRLENTFDSVIS
                     HPRTGDEVWFNQAPQFHPSDYPSHIYESLLNSYRGKENELPQTSFFGDNSPIDTKALK
                     HIRETMFSEATVFPWRQGDVVMLDNVLVCHGRMPFSGPRKILLAMTDN"
     gene            complement(1770..>4221)
                     /locus_tag="VGD38_06210"
     CDS             complement(1770..>4221)
                     /locus_tag="VGD38_06210"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEY0727647.1"
                     /translation="AVLHCVPSLFRALLNERLSKADFAALQSVVLTGEPLYPADVKRW
                     LDVFGDRVQLFNIYGTTETSLSKFVYQVKPEDVERPSIPVGKPIAGSNVMVVDSRGEL
                     CGMGAVGEIHIQTPYRSYGYYGEPELTAAVFIQNPFSDDPNDLVHKTGDYGRLLKGGD
                     LEHLGRRDQQVQIRGVRVELGELENLLRAHPGVADVAVIDRDDADGNKLLAAYLMLKN
                     GTGSEELRSYLAQLVPPTMLPSAFVTLEQLPRTLNGKIDRKALPALETVRPETETDNG
                     QWSPLEQIVAGVWCEVLRLERIGRQGNFFNLGGHSLLVTQVLARVREHLKVELPVRSL
                     FEAPTVEQFSRLLQEQLSRGPQRELTSIARVDRNGELPLSYSQQRMWFFEQLASGTSA
                     FNMAAGVRLAGKLNVTALEQTFSELMRRHEGLRTVFPEVNGEPRQVIQPPRRFSLPLT
                     DLSRLPAVEREAQAARLAQQETLRKFELAQGPLARPTLLKLNDEDHIVICTLCHIIGD
                     GQSFEVIIAEMSQLYSAMVQGTPSPLPELSVQYVDYAAWQRQWLQGEELDRRLAYWRR
                     LLADAPEKLSLPLARPRPKVQAFGGASQEINLSAQMTAALRELSRREGVTLFMTMLSA
                     FVLLLNQYTDDEDIVVGSVYANRERVEAEKLVGILANTIVLRVDLSGTATFKDVLKQV
                     RQVCIDAYTHQLSPELIREDLAKRGDDRERLFDVWFQVDRQRQEKLDMHGLETSSYGE
                     GKEVPRFELSLTFGELEEEIIGKADYDDRIFSADTMARMLEDYLGLLELITINPEKNL
                     AAISLGNTAAAAASLDLQ"
BASE COUNT          856 a         1308 c         1167 g          890 t
ORIGIN      
        1 acacttcaac ccgctctgta tcaagccaat cagcgagtct tcccgcgtcc agcaccacgt
       61 cgcggctctc gggaatgcaa actacgccgc cggaacacaa gggcacaaag gcgtctttca
      121 aaaacccgtc aaacgagggc gacgccaatt gactgacgcg cgtgcctggt cctgctccaa
      181 ccgcttcaat ctcccagcgc acaaaatggt cgataccctt tagccgtcca agaatcgctt
      241 tcggttttcc cgtcgaacct gaagtgaaat agatcgagca cggagcgtcg gggtcgcccg
      301 gcactgccgg tgcacttgtt tgctggtact catcgaagct cgtcatcact tccaggcccg
      361 catagtcgtt cgcgctgttt tggtccaggc aaactacctg cgctttttca ttcccttcaa
      421 ctcgcagccg cccgagcttc tccaagtgcc gcgtttcggt tacgtaccac tgaggtttca
      481 cttgctcgct catgacgtgc aaccgcccgt cgggaaaact cggatcgaga ggaataaaga
      541 caccgccggc tttcaacacg ccgagaatgc ccgtgatgat ccatctcgga tcgtcgctca
      601 acaatccgac catcgttcct ttgcgcacgc cgccgtcgag caggaagttc gcgagacggt
      661 tcgactccgc ttccagctcc gcgtagtaaa cctgccgccc gggcccgtcg atcgccactc
      721 gaggcccaaa ctcggccgcc attcggctga acatctcttg cacggtctcg ttgctcatct
      781 cagttgtccg tcattgccag caggatcttg cgcggcccgg agaaaggcat tcgcccatga
      841 caaaccaaca cgttgtccag catcaccacg tcgccctgac gccacggaaa tactgtcgct
      901 tcgctaaaca tggtttcccg aatgtgtttg agggctttgg tatcgatggg actgttatcg
      961 ccgaagaacg acgtttgcgg cagctcgttc tccttgccgc gataagagtt gagtaacgat
     1021 tcgtagatgt gcgacgggta atcagaagga tgaaattgcg gggcctggtt gaaccaaact
     1081 tcgtcaccag ttcgcggatg agaaatcacg ctatcgaatg tgttctccag tctcaaaccg
     1141 ccatctgctt tccattcgta gtcgatcaac atctcgcggc agtaacgctc taccagcgaa
     1201 cgatcggtag tttggaacgt cgcctgccac gacaagccga agccggttgc gccgtggaga
     1261 tttcgtagat acttgacgcg cttcgttctg aattcttcca cgacggcgcg atcgagtttc
     1321 ttgaggatct tgcggttatc ggcgagcgga gtttgcccgc ctttgcccgg ctcaacaatg
     1381 cagcagaaga aaagccgcgc tgggaacttg tgcgtatagg catactcgct gtgcatcgag
     1441 agttggtatt cggccgggta ttcggtggag gtgtaaatgc ccgaggtgat cttggtccgt
     1501 ggaccattgt cgtcgagaca atcgagcaat cccggcgcga gcgtgcgcgt cagccgcgca
     1561 aacgcggcgg gtgtgccgat gtcgaaatta cggaaaagaa tcgcgccgtg ctcggttaac
     1621 ttctgctcga cgtaatcgcg gttatcctgg taccaggaga cgagcaagcc agactcaggc
     1681 cgcccgttac tcgactggta ttcgacgaca aacggcacac tgtgctcagg atccaggagc
     1741 ccggttttaa tcatgttcgt ggctgagtat tactgaaggt cgagacttgc agcagcggcc
     1801 gcggtgttac ccagtgagat cgcagcgagg ttcttttcgg gattgatggt gatcagttcg
     1861 agcagcccga gataatcttc cagcatgcgg gccatggtgt ctgcgctgaa tatgcggtcg
     1921 tcataatcag ccttgccgat tatttcttct tcgagctcgc caaaggtcag tgacagttcg
     1981 aacctcggga cctctttccc ttcaccatac gagcttgttt ccagcccatg catgtcgagc
     2041 ttttcctgac gctggcggtc aacctggaac cagacgtcaa acagccgctc gcgatcgtcg
     2101 cctcgttttg ccaggtcttc acggattaac tcgggagaga gttgatgcgt gtaagcgtcg
     2161 atgcaaactt gcctaacctg cttcagcacg tctttgaagg tagctgttcc tgaaaggtcc
     2221 acgcgcaaca caatcgtgtt cgcaagaatg ccgaccaact tttcggcttc aactctttca
     2281 cgatttgcat agacggaccc aacgacgatg tcttcgtcgt cagtgtactg gttgagcaac
     2341 aaaacgaagg ccgaaagcat ggtcatgaag agcgtcacac cttcacggcg gctcaactcc
     2401 cggagcgcgg ctgtcatttg cgctgacagg ttgatctcct ggctggcgcc gccgaacgcc
     2461 tgcacctttg gtcgcggacg tgctagcggc aggctcagtt tttcaggggc atcagcgagg
     2521 aggcggcgcc agtaagcaag gcggcggtcc aactcttcac cttgcaacca ctgccgctgc
     2581 caggccgcgt agtccacata ctgcacgctc aactccggca ggggcgaagg cgttccctgc
     2641 accatcgccg aatagagctg actcatctcc gcgatgatca cttcgaacga ttgcccgtcg
     2701 ccgatgatgt gacacagcgt gcagatgacg atgtggtctt cgtcgttcag cttcaacagc
     2761 gtgggccgcg ccagtggtcc ctgggccagc tcaaacttgc gcagcgtctc ttgctgggcc
     2821 agccgcgccg cctgcgcctc gcgctcaact gccggcaagc ggctcaggtc ggttaagggc
     2881 aacgagaacc gccgcggagg ctggatcacc tgccgcggct cgccgtttac ttccggaaac
     2941 acagtgcgca gtccttcgtg ccgccgcatc aactcactaa aggtctgttc cagcgccgtc
     3001 acgttcagct tgccggccaa acgcacgccc gccgccatgt tgaaggcgct cgtcccgctg
     3061 gccagttgct cgaagaacca catccgctgc tgcgaatagg agagcggcaa ctccccgttc
     3121 cggtccaccc gcgcgatgct ggtcagttca cgctgcgggc cgcggctgag ctgttcctgc
     3181 agcaggcgcg agaactgttc caccgtcggc gcttcaaaga gactgcgcac gggcagttcc
     3241 actttcagat gttcgcgcac gcgggccaac acctgcgtca ctaataatga atgtccacca
     3301 agattgaaga agttaccctg ccgcccgatc cgctccagcc gcaatacttc gcaccagacg
     3361 ccggccacga tctgttccag cggactccac tggccgttgt ctgtctccgt ttccgggcgc
     3421 accgtctcga gggcgggcaa agccttgcgg tcgatcttgc cgttgagggt gcgcggcagt
     3481 tgctccaacg tgacaaaggc ggagggcagc atcgtgggcg gcaccagttg cgccaggtag
     3541 gaacgcaact cctcgctgcc ggtcccattc ttcaacatca ggtaagccgc cagcagcttg
     3601 ttgccgtcgg catcatcgcg gtcgatgacg gccacatcgg ccacgccggg atgcgcgcgc
     3661 aagaggttct cgagttcgcc caactccacg cgcacaccac gaatctgcac ctgctgatcg
     3721 cgccggccca gatgttcgag gtcgccgcct ttgagcagcc ggccgtagtc gccggtcttg
     3781 tgcacgaggt cgttcgggtc atcgctgaac gggttctgaa tgaacacggc cgccgtcaac
     3841 tccggctccc cgtaatagcc gtacgaacga tacggcgtct gaatgtggat ctcgccgact
     3901 gcgcccatac cgcaaagctc acctctcgaa tccacgacca tcacgttaga accggcaatc
     3961 ggtttaccga cgggaatgga ggggcgttcg acgtcctcgg gtttgacctg gtagacaaac
     4021 ttggaaaggc ttgtctcggt cgtgccgtag atgttgaaga gctgtacccg atcgccgaac
     4081 acatccagcc accgcttcac gtccgccgga tacaacggtt cgcccgtcag cactacactc
     4141 tgcaacgccg caaagtcagc cttgctcaag cgttcattca gcaacgcgcg aaacagcgaa
     4201 ggcacacagt gcagcacggc t
//
LOCUS       DASWTX010000404         2197 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_91425, whole genome shotgun sequence.
ACCESSION   DASWTX010000404 DASWTX010000000
VERSION     DASWTX010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2197
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91425"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..233
                     /locus_tag="VGD38_06215"
     CDS             <1..233
                     /locus_tag="VGD38_06215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727648.1"
                     /translation="RAGIVDARREGQWMHYRVVEPADPEAARLLKDVMSWLASDQEMQ
                     RDRERLVKICCAPNLPVSIQSAPRPASLAHSH"
     gene            complement(257..1291)
                     /locus_tag="VGD38_06220"
     CDS             complement(257..1291)
                     /locus_tag="VGD38_06220"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY0727649.1"
                     /translation="MTTKTTTNTLGLLAVAAGGAWVVKSLLTRSMEYDFKDKVVLITG
                     GSRGLGLVMAREFAAEGARLVICARDEDELERARMDLEDHGAEVMIHRCDVTSRTDVL
                     EMVAAIESRLGGVDVLVNNAGVIQMGPIEVMTHADFEKAMNAHFWGPLNTMMAVLPRM
                     RQKKSGRIVNISSIGGKVSVPHLVPYCASKFALTGLSRGMRTELLKDGIAVTTICPGL
                     MRTGSPRNAGFKGKHREEYAWFSISDALPLLSVSAERAAREILSACRRGRTEVVISVP
                     AKLAVLFDTLMPEVTSNLFALANKLLLPAPGGIGEREAKGKESQSSLSPSWLTTLNEQ
                     AAVRNNEVLS"
     gene            1457..>2197
                     /locus_tag="VGD38_06225"
     CDS             1457..>2197
                     /locus_tag="VGD38_06225"
                     /inference="COORDINATES: protein motif:HMM:NF037429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Vms1/Ankzf1 family peptidyl-tRNA hydrolase"
                     /protein_id="HEY0727650.1"
                     /translation="MATENKDLAKEVAKEEIKTTSNAERLLEKLLAYEPESGPFVSFY
                     LDARVDENGKRNVMPVVRKQLNERAKTYDNNTAEKENFEKDSARIINYLENEVPTTAQ
                     GLAIFACTAANDYFEVGEFEAPFESNRLFVSDRPHVYPLARLIDRYRRFAVLLADTNR
                     ARIYVFATGRTVEEQTVENVKTKRSSVGGWSQARYQRHEENYHLHHVKEVVQMLERVV
                     SDEEVENIILAGDETVVIPLIREQLTPAL"
BASE COUNT          500 a          674 c          597 g          426 t
ORIGIN      
        1 ggcgcgcggg aatcgtagac gcccggcgcg aaggacagtg gatgcactac cgcgtcgtcg
       61 aacccgccga tccggaagcg gcgcgattgc tgaaagacgt gatgtcgtgg ctggcgagcg
      121 atcaggaaat gcagcgcgac cgcgagcggc tcgtgaagat ctgctgcgcg cccaatttac
      181 cggtgagcat tcagagcgcg ccccgaccag cgagcctcgc tcattcgcat tagaagttct
      241 gcttcaacca aactgttcac gaaagaactt cgttgttgcg aactgcggcc tgctcgttca
      301 gcgtggtgag ccacgacggc gacaggctgg attggctctc cttccctttc gcctcgcgtt
      361 cgccgatgcc gcccggagca ggcaataaga gcttgttcgc gagggcaaag agatttgaag
      421 taacttccgg cattaacgtg tcgaacagaa cagccagctt cgcgggcaca gagatcacga
      481 cttccgtgcg gcctctgcgg cacgcgctca ggatctcgcg cgccgcgcgt tcggcactca
      541 ccgaaagcaa cggtaacgcg tcgctgatgc tgaaccacgc gtactcttcg cggtgcttgc
      601 ctttgaaacc cgcgtttcgc ggactcccgg tgcgcatcaa ccccgggcaa atcgtcgtca
      661 cggcaatccc gtccttcagc aactcagtcc gcattccccg cgataacccc gtcaacgcaa
      721 acttgctcgc gcagtacggc acgaggtgag gcacactgac cttcccgccg atcgacgaga
      781 tgttcacaat gcgcccgctc ttcttctgcc gcatacgcgg caacacggcc atcatcgtgt
      841 tcagcggccc ccagaagtgc gcgttcatcg ccttctcgaa gtcggcgtgc gtcatcactt
      901 caatcggtcc catctgaatg acgccggcgt tgttcaccag cacgtccaca ccacccagac
      961 ggctctcgat cgcggccacc atctcgagca catccgtgcg gctcgtcaca tcgcagcggt
     1021 gaatcatcac ttccgcaccg tgatcctcaa gatccattct cgcacgctct agctcatcct
     1081 cgtcgcgcgc acagatcacg agtcgcgcac cttcagccgc aaactcgcgc gccatcacca
     1141 gtccaagccc gcgcgatcca cccgtgatca gcacaacttt gtctttgaag tcgtattcca
     1201 tgctgcgcgt caaaagcgat ttgactaccc aagcgccgcc ggcggcgacg gcaagcaatc
     1261 cgagagtgtt cgtagtggtc tttgtggtca tgacaccact tcgcgacgca actactgctc
     1321 cggcatgaaa acagcttagg gtgttgtgga acaaagcaat ttcccgtgga ttttgctctg
     1381 taactaaaca gacgacttcc cccgacgtac ggtacgaata caggcgtgtg cgtacacgct
     1441 gcgatgagga aacgttatgg caactgaaaa taaagatctc gcgaaagagg tcgccaaaga
     1501 agaaatcaaa accaccagca acgcagaacg attactggaa aagcttttgg cttacgagcc
     1561 cgagtcgggt ccgttcgtga gtttttacct ggacgcgcgt gtcgatgaaa acgggaagcg
     1621 aaatgtgatg cccgtcgttc gcaaacaact gaacgagcgc gcgaagacat acgacaacaa
     1681 cacagccgaa aaggaaaact tcgaaaaaga ctcggcgcgc ataatcaact atctcgaaaa
     1741 cgaagtcccg accacagcac aaggtctggc gatctttgcg tgcactgccg caaacgacta
     1801 cttcgaggtg ggcgagtttg aagcgccgtt cgaaagtaac cgcctgttcg tttccgatcg
     1861 gccgcacgtt tatccgctcg cacgcttgat cgatcgctac cggcgcttcg cggtcttgct
     1921 cgccgacacc aatcgcgcgc gtatctacgt cttcgcgacc ggccgcacgg tcgaggagca
     1981 gacggttgaa aacgtgaaga cgaaacgatc gagcgtcggc ggctggtcgc aggcgcgtta
     2041 tcagcggcac gaggagaatt accatctgca tcacgtgaag gaagtcgtcc agatgctcga
     2101 acgcgttgtc agtgacgaag aagtcgagaa catcattctc gcgggtgatg aaactgtagt
     2161 gattcctttg attcgcgagc aactgacacc ggcgttg
//
LOCUS       DASWTX010000405         1520 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_397270, whole genome shotgun sequence.
ACCESSION   DASWTX010000405 DASWTX010000000
VERSION     DASWTX010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397270"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1508)
                     /locus_tag="VGD38_06230"
     CDS             complement(<1..1508)
                     /locus_tag="VGD38_06230"
                     /inference="COORDINATES: protein motif:HMM:NF012550.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HEY0727651.1"
                     /translation="MMRKAKVVGKFVEFHGAGAASLSVTDRATIANMAPEYGATMGFF
                     PDDEETCVYLLATGRSESHVDLVRSYYKAQGMFGMPKQGECDYSVVLDLDLASILPSV
                     AGPKRPQDRIELTKLKDQFSELMVKPVTEGGYGKTEDDLWTRYHVRIGADRQRQVAGG
                     GEQRQETIPSAVENHVSEKNTSVWTETEMVNNRPTPDIVPDIPEDEFRTGDELLGHGD
                     VLIAAITSCTNTSNPSVMLAAGLLAKKAVERGLTVNAKVKNSLAPGSRVVTDYLERTG
                     LQPYLNELGFNLVGYGCTTCIGNSGPLDPAIEQIVNERDIIGVSVLSGNRNFEARVHQ
                     SIKANFLMSPPLVVAFALAGRIDLDFSTDPIGTGKDGEDVYLRDIWPTMEEINSMMRA
                     AFDPETYQRLYSNFAEQNPFWNDIPTTTGNVYQWEPSSTYIREPPYFENFHNSLEPLS
                     DVKAARPLAIFGDSVTTDHISPAGAIKPSSPAGLYLQEQGVDIKDFNSYGARR"
BASE COUNT          308 a          453 c          413 g          346 t
ORIGIN      
        1 cgccgcgcgc cgtagctgtt gaagtctttg atgtcgacgc cctgttcctg caagtacaga
       61 ccggccggcg acgatggctt gatcgcgcct gcgggactga tgtgatcggt agtgactgaa
      121 tcaccgaaga tcgcgagcgg ccgtgcggct ttcacgtcag acaatggttc gagggaattg
      181 tgaaagtttt caaagtacgg cggctcgcgg atgtaagtcg atgaaggttc ccactggtaa
      241 acgtttccgg tggtggtcgg aatgtcattc cagaacgggt tttgctccgc gaagttgctg
      301 tagagacgtt gatacgtctc cggatcgaac gccgcgcgca tcattgagtt gatctcttcc
      361 atcgtcggcc agatgtcgcg caagtaaacg tcctcgccgt ctttgcccgt gccgatcgga
      421 tccgtcgaga aatccagatc gatgcggccc gcgagtgcga acgcaaccac cagcggcggg
      481 ctcatcagaa aattcgcttt gatgctctga tgtacgcgcg cttcgaagtt tcgattacct
      541 gataaaacag aaacgccgat gatgtcgcgc tcattgacga tctgttcgat cgccggatcg
      601 agtggaccag agttgccgat gcacgtcgtg caaccgtaac ccacgagatt gaagccgagc
      661 tcgttcaggt aaggctgcaa accggtgcgt tcgagataat cggtcaccac gcgcgagcct
      721 ggcgcgagcg agtttttcac tttcgcattc acagtcaaac cacgttcgac ggctttcttc
      781 gccaacaatc ccgcggccag catcacactc ggattcgaag tgttcgtgca tgaagtgatc
      841 gcggcgatta acacatcacc gtggcctaac agctcatcgc cggtacgaaa ttcgtcttct
      901 ggaatgtcgg gaacgatgtc gggcgtcgga cggttgttga ccatctccgt ttccgtccag
      961 acgctcgtgt ttttctccga gacgtgattt tcaacggctg acggaatcgt ttcctgccgc
     1021 tgctcgccgc cgcccgcaac ctgccgctgc ctgtctgcgc cgatcctcac gtgataacgc
     1081 gtccacagat cgtcttcggt tttgccgtag ccgccttcag tgaccggctt caccatcaat
     1141 tcactgaact gatctttcag cttcgtcagc tcgatgcgat cctgcggccg cttcgggccg
     1201 gcaacactcg gcaaaatcga cgcgagatcg agatctaaga cgacgctgta gtcacactcg
     1261 ccctgcttcg gcataccaaa cattccctgc gccttgtaat agctgcgcac gagatcgaca
     1321 tggctctcgg agcggccggt cgcgagcagg taaacgcacg tttcttcatc atccgggaag
     1381 aagcccatcg tcgcgccgta ttccggagcc atgttcgcga tcgttgcgcg gtccgtcact
     1441 gacaaactgg cagcacccgc gccgtgaaac tcaacaaact tgccgaccac tttcgcttta
     1501 cgcatcatct ccgtcacacg
//
LOCUS       DASWTX010000406         2973 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_288243, whole genome shotgun sequence.
ACCESSION   DASWTX010000406 DASWTX010000000
VERSION     DASWTX010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2973)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2973)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2973
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288243"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..360)
                     /locus_tag="VGD38_06235"
     CDS             complement(<1..360)
                     /locus_tag="VGD38_06235"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEY0727652.1"
                     /translation="MKAIQVSQTGGPEVLALVDAPEPKPKPNEAVVQVKAAGVNFIDV
                     YFREGRYPAQLPFINGQEAAGVVTEVGSEVKTFKAGDRVAYTGALGSYAEFAAVPESR
                     LVKIPDGLELEQAAAAML"
     gene            404..1807
                     /locus_tag="VGD38_06240"
     CDS             404..1807
                     /locus_tag="VGD38_06240"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY0727653.1"
                     /translation="MRRRTIPIFVALLVVCLCRGSVAQIKIPYETYKLPNGLTVIMSV
                     DRTTPTVAVNIWYHVGSKNEAPGRTGFAHLFEHVMFTGSGHVPYGLHDKLTEGVGGGN
                     NGSTTNDRTNYYETIPSNYLETALWLESDRMGFLLDTLDIAKLNAQRDVIKNERRQSY
                     DNQPYGRVSEIFSAAMYPKGHPYSWPVIGSMTDLSAASEDDVKAFFRLYYAPNNATLA
                     IVGDFDPAQAKAWVQKYFGDLKKGEPVQRPSVAPAKLDASKRLVYEDRVQVPRLYVQW
                     PTVGIKHGDETPLAVMSSILSGSRTARLTKALVYDSQMASNVIAFQNSAEDVGVFQVI
                     VIPRPEHTLTELEAAVDQVIQKFIAEGPTAEELQKAKSGLELNFLRGLESNLGKANQL
                     LDGAVFHNNPGQFSVDYQKTLAVTAADVKRVAASYLSRSRIVLSVVPKGKKDQASKAA
                     ESETVTMVTKQSRGGRS"
     gene            1804..>2973
                     /locus_tag="VGD38_06245"
     CDS             1804..>2973
                     /locus_tag="VGD38_06245"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY0727654.1"
                     /translation="MRQQNRLLAFGAALVIALANVAAVAQQTLDRTKVPTPGAIPALR
                     VPTWTKTQLSNGATLIVSERHNLPLVSFSITFLGGANQFEPANRRGVASMTASMLTEG
                     TKTRTGDQLSDALQLLGTNVGAGVGGEEGSIGFVSTTKNFDAVLAIMADMMLNSTFPA
                     DALDRLRARTLVNLTQAKDQPVVIGAQVFSRILYGDAHPYGQRPTETSVKAITRDDVV
                     AFQKAYFQPGRAIITVVGDVRPANVKASVEKALAAWSKGGDKPSFDYPKVPELQPAKI
                     YLVDKPGAAQSVVNIGLPGPPRNTPDYFALQVLNTILGGQFQSRLNANIREQKGYSYG
                     VNSGFGYGKGPGAFRAGGSIFSAKTDAALIEFMNELKGIVSEKPITDEEIKTAKES"
BASE COUNT          644 a          818 c          897 g          614 t
ORIGIN      
        1 aagcatcgcc gccgcggcct gctcgagttc caaaccgtcg ggaatcttta cgagacgact
       61 ctccggcact gctgcaaact cggcataact tccgagcgcg cccgtgtacg cgacccgatc
      121 gcccgccttg aacgtcttca cttcgctgcc gacttcagtc acgacacccg cggcttcctg
      181 tccgtttata aatggaagtt gcgccgggta acgaccctcg cgaaagtaaa cgtcgatgaa
      241 gttcacaccc gccgctttga cctgcacgac cgcttcattc ggcttcggtt tcggttcggg
      301 cgcgtcgacc agagcgagca cttcgggccc gcccgtttgg gagacttgaa ttgctttcat
      361 agtgaagtga ttttgccaca gatcgtgtta atctgtgccc cctatgagaa gaagaaccat
      421 acccatcttt gtcgcactcc tcgtcgtgtg tttgtgccgc ggatctgtgg cccagatcaa
      481 aattccgtac gagacataca aacttccaaa tggtctcacg gtgatcatgt cggtcgatcg
      541 gaccacgccc accgttgcgg tcaatatctg gtatcacgtc ggctccaaaa atgaggcgcc
      601 gggccgtacc ggtttcgcgc acctgttcga acacgtgatg ttcaccggct ccggtcacgt
      661 gccttacgga ttgcacgaca agctcacgga aggtgtcggc ggtgggaaca acggttcgac
      721 cacgaatgat cgcacgaact actacgagac gattccgtcc aactatctcg aaaccgcgct
      781 gtggctcgag tccgaccgca tgggtttcct gctcgacact ctcgacatcg cgaaacttaa
      841 cgcgcagcgc gacgtcataa aaaacgagcg tcgccagagt tacgacaacc agccttacgg
      901 ccgcgtcagc gagatttttt cggcggcgat gtatccgaaa ggtcatccgt attcgtggcc
      961 cgtgatcggc tcgatgacgg acctgagtgc ggcatccgaa gatgacgtca aagcgttctt
     1021 ccggctttat tacgcgccca acaacgcaac gctcgcgatc gtcggcgact tcgatccggc
     1081 gcaggcgaaa gcatgggtgc agaagtattt cggcgatttg aaaaagggtg aaccggtcca
     1141 gcggccttca gtcgcgcccg cgaagctcga cgcgagcaag cgactcgttt acgaggatcg
     1201 cgtgcaggtg ccgcggcttt acgttcagtg gcccacggtc ggtatcaaac atggtgacga
     1261 aacgccgctc gcggtgatga gctcgatact ttccggttcg cgcaccgcgc ggctcaccaa
     1321 ggcgctcgtc tacgattcgc agatggcttc aaatgtgatt gcgtttcaaa actcagcgga
     1381 agacgtcggc gtgtttcagg tgatagtgat accgcggccg gagcacacgt tgactgaatt
     1441 ggaagcggca gtcgatcagg tgattcagaa gttcatcgcc gaagggccaa cggcggagga
     1501 gttgcagaaa gcgaagagcg gattggagct caatttcctg cgcgggctgg agtcgaatct
     1561 cggcaaggca aatcaactgt tggatggcgc ggtgtttcac aacaatccgg gacagttcag
     1621 cgtcgattat cagaagacgc tggcggtgac ggcggcggac gtgaagcgtg ttgcggcttc
     1681 atacctgtcg cgctcgcgca tcgtgttgag tgtggtgccg aagggtaaga aggatcaggc
     1741 ttcgaaagca gccgaaagcg aaacagtgac gatggtgacc aaacagagcc gcggaggtag
     1801 atcatgagac aacaaaatcg actgcttgcg tttggcgctg ctttagtaat cgcgctcgcg
     1861 aatgttgctg cggtagcgca acagacgctt gaccggacga aggttccgac gccgggagcg
     1921 attcccgcgc tgcgtgtgcc gacgtggacc aagacgcaac tctcaaacgg cgcgacgttg
     1981 atcgtttctg aaagacataa tctgccgctg gtgtcctttt cgatcacgtt tctcggcggc
     2041 gcgaatcagt ttgaaccagc aaatcgtcgc ggtgtggcgt cgatgacggc gtcgatgttg
     2101 acggaaggca cgaagacgag aacgggcgat cagctttcgg acgcgctgca actgctcggg
     2161 acaaacgtcg gtgcgggcgt cggcggtgag gagggatcga tcggtttcgt ttccactacg
     2221 aaaaacttcg acgctgtgtt ggcgatcatg gctgacatga tgctcaattc gacgtttccg
     2281 gctgatgcgc tcgaccggtt gcgcgcgcgc acgctcgtca acctgacgca ggcgaaagat
     2341 cagccggtgg tgattggcgc gcaggtgttc tcgcggattc tttacggcga cgcgcatccg
     2401 tacggacagc gtccgactga aacgtcggtc aaagcgatca cgcgcgatga cgtggtcgcg
     2461 tttcagaagg cttacttcca acccggccgc gcgatcatca ccgtggtcgg cgatgtccgt
     2521 ccggcgaacg tcaaagcttc agtagaaaaa gctttggcgg cgtggtccaa gggcggtgat
     2581 aagccgtcgt ttgattatcc gaaagtgccg gaactgcaac cggcgaagat ttatctggtc
     2641 gacaaaccgg gcgccgcaca gtcggtcgtg aacatcggct tgcccggacc gccgcgcaac
     2701 acgcctgatt acttcgcgct gcaagtgctc aacacgatcc tcggcggaca gtttcagtcg
     2761 cggctgaatg cgaatattcg cgaacagaag ggctacagct acggcgtgaa ctcgggcttt
     2821 ggttacggca aaggaccggg tgcatttcgt gccggtggat cgatcttttc ggcgaagact
     2881 gatgctgcgt tgattgaatt catgaacgag ttgaaaggca tcgtgagcga gaagccgatc
     2941 acggacgaag agatcaagac ggcgaaggag tcg
//
LOCUS       DASWTX010000407         3592 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_310411, whole genome shotgun sequence.
ACCESSION   DASWTX010000407 DASWTX010000000
VERSION     DASWTX010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3592
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_310411"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..229
                     /locus_tag="VGD38_06250"
     CDS             <1..229
                     /locus_tag="VGD38_06250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727655.1"
                     /translation="DVVRDLRQNSGKQFDGKVVAAFARAILKEVNGVTKERRIMKMLG
                     KDYLQGENVPTLLSDLIADLTSVGSEAQSCK"
     gene            complement(192..1055)
                     /locus_tag="VGD38_06255"
     CDS             complement(192..1055)
                     /locus_tag="VGD38_06255"
                     /inference="COORDINATES: protein motif:HMM:NF023818.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FhaA domain-containing protein"
                     /protein_id="HEY0727656.1"
                     /translation="MGLLESIRKWIDGETGEDLLEAADEHAKPRRVWEEFLVKIAREV
                     EAAMQREMFTPPGGPTYIPREYIVYLSPDDDKDWQGDKRRGLEQGLFHVLSERARELS
                     GQTQLAVKSFAVELRVDGTLNKGEFRVQAVWDETESGHTMVTPRVDPSRTAPAFSPND
                     TLVERASDSDSSESEQTVVRPKASALYSVEVWRNGVREAVVPIMKNEITIGRGSRSIT
                     VDLPVKGDPEVSRVHAVLSRDNEGRYWLVAKGRNPTIVNGRELTREEPTEVAPDQKIS
                     ICNFVLRIPPK"
     gene            complement(1077..2636)
                     /locus_tag="VGD38_06260"
     CDS             complement(1077..2636)
                     /locus_tag="VGD38_06260"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HEY0727657.1"
                     /translation="MSELKLQQSRLDGRYDIIECLGRGSYAEIYVANDNAAPEGSPRT
                     IVIKALNLHLQGEPDVELERTLVSNFQNEAVALDRVRHPNVINRLGHGTAIDLAGTTF
                     HYIVLEYLPGGDMLKLTKAQPLSINRALHYLEQVCSGLAHAHKCGVIHRDIKPQNLLL
                     TEDREVVKIADFGVARLDATEGAITRVGTNIYSAPEHNPLIQTGQLDTTGLKFPHDHL
                     TPAADIYSLAKTTYALIAGEAPRRFAQHAVSDLPPFARDTYWGNAVLRVLQKATQNRP
                     EDRYQTVEEFWEELSDASLPPTRPLQMVPPLEMRRKPSEDLSIEPEPEDFTEAAPPRP
                     HFAVPRPEHSPAELTFADVDVKRPRIVVPINLEAQRQMELRERQQQLVGEQSANGRKR
                     STVEEILPPSKKRRALVALGLILAFAGMLLATHKYVTSQWNPLAEITRIAEPPLIGRE
                     GFTTTDVNLRPVANVSQDPIGLAESGSKVKVLSADNNWYEVQVMEHARPKLDPYSSDR
                     GWINKRYVRFD"
     gene            complement(2684..>3592)
                     /locus_tag="VGD38_06265"
     CDS             complement(2684..>3592)
                     /locus_tag="VGD38_06265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727658.1"
                     /translation="DGITRHISDNELRQLLVVNNDLEEVCRELKRRCYERGAEDNLTV
                     VVVRVGDPVRTDERLAELEPTITPETQTAYAAQNGGQQTMIGTQSNGSPVTGSRISIP
                     AASAQADPNPGTLNVAEPRRGGSGLARVFGVLLVLVLLAAAFYAGARFKERIPFLATK
                     PSQEPVLTLTVPAPTPEPFAQFERMRRQVDDDPRAWLATEPQKELVNAGVQSPLDSPH
                     TDFLYLYGRANLLSGNTDEAGKAFDAAIAKADANPSPANSTIKKESVLGLAAVSVRTQ
                     RDRWKVLNHYEELTKPPASSASPAAP"
BASE COUNT          667 a         1081 c         1048 g          796 t
ORIGIN      
        1 agacgtcgta cgcgacctgc gtcagaacag tggaaagcaa ttcgatggta aagtagtcgc
       61 agccttcgcc cgcgcgatat tgaaggaagt aaacggcgta accaaagagc gccgcatcat
      121 gaagatgctg ggcaaggatt atctccaggg cgagaacgtg ccgacgcttt tatccgatct
      181 gatcgcggac ctcacttcgg tgggatccga agcacaaagt tgcaaataga gattttttga
      241 tcgggcgcga cttccgtcgg ctcttcacgt gttaactcgc ggccgttgac gatcgtgggg
      301 ttgcggccct tcgcgaccag ccagtaacgc ccttcgttat cacgcgacaa gacggcatga
      361 acacggctca cttcaggatc gccttttacg ggcaggtcga ctgtgatgct gcgcgagccg
      421 cgtccgatcg tgatctcgtt cttcatgatc ggcaccactg cttcacgcac accgttgcgc
      481 cagacttcga ctgaatacaa cgctgaagct ttcgggcgca cgaccgtctg ttcgctctcg
      541 ctcgaatcag aatcagaggc cctttcgaca agggtgtcgt ttggactgaa cgccggcgcg
      601 gtgcgcgagg gatcgacgcg cggtgtcacc atcgtgtgac cgctttccgt ttcgtcccag
      661 accgcctgca cgcgaaactc gcctttattc agcgttccgt ccacacgcaa ctcgaccgca
      721 aaagacttca ccgctagctg cgtctggccg ctcagttcac gcgcgcgctc ggaaagaacg
      781 tgaaacaggc cctgttcgag cccgcggcgt ttgtcgcctt gccagtcttt gtcgtcgtcg
      841 ggactgagat agacgatgta ctcgcgaggg atgtaggttg gaccacccgg cggcgtgaac
      901 atctcgcgct gcatggcggc ttcgacctcg cgcgcgatct tcaccagaaa ctcttcccaa
      961 acacggcgcg gtttagcgtg ttcgtcggcg gcttcgagca agtcctcgcc cgtctcgccg
     1021 tctatccatt ttctgatcga ttcaagcaga cccaagcttg gttctcctca aataagttag
     1081 tcaaatctaa cgtaccgctt gttaatccag ccacggtcgg acgaatacgg atcgagcttg
     1141 ggccgggcgt gctccatcac ctgaacctca taccagttgt tgtcagcgct caatactttc
     1201 actttcgaac ccgattctgc cagtccaatc ggatcttggg aaacgttggc gaccgggcgc
     1261 aagttcacat cggtggtcgt aaaaccctcg cggccaatca acggcggctc cgcaatccgc
     1321 gtgatctccg ccaacggatt ccattgcgaa gtcacgtatt tgtgcgtcgc caacagcata
     1381 cccgcaaaag ccaggatcag acccagggcg acgagtgcgc gacgcttttt gctcggcggc
     1441 agtatctcct cgacggtcga gcgctttcgc ccgttagcac tctgttcgcc gacaagctgc
     1501 tgctggcgct cgcgcagttc catctgccgt tgcgcttcga gattgatcgg caccacgatc
     1561 cgcggtctct ttacgtctac gtcggcgaac gtcaactccg ctgggctatg ttcgggtcgc
     1621 gggaccgcga aatgcggccg cggcggcgcg gcttcggtga agtcttccgg ttccggttcg
     1681 atcgacagat cctcgctcgg tttccggcgc atttccagcg gcgggaccat ttgcagcgga
     1741 cgcgtcggcg gcagactcgc gtcagacagc tcctcccaaa actcttcaac cgtttgataa
     1801 cgatcttccg gccggttctg cgtcgccttt tgcagcacgc gcaaaacggc gttgccccaa
     1861 taagtgtcgc gcgcaaacgg cggcagatcc gacaccgcat gttgcgcgaa ccgccgcggc
     1921 gcctcaccgg cgatcaacgc gtacgttgtt ttcgcgagcg aataaatgtc ggcagccggt
     1981 gttaagtgat cgtgcggaaa cttcaatccg gtcgtgtcga gttgtccggt ttgaatcagc
     2041 ggattgtgtt cgggcgctga atagatgttc gtgccgacgc gcgtgatcgc gccctccgtt
     2101 gcatcaagcc gcgcgacgcc gaagtcagcg atcttcacga cctcgcggtc ctcggtcaac
     2161 aacaggtttt gcggtttgat gtcgcggtga ataacgccgc acttgtgcgc gtgcgcgaga
     2221 ccggagcaaa cctgctcgag atagtgcagc gcgcgattga tcgacagcgg ctgcgctttc
     2281 gtcagcttca acatgtcgcc gccgggaaga tactcgagca cgatgtagtg aaacgtcgtg
     2341 cccgcaagat cgatcgcggt tccgtggccg agacgattta ttacatttgg atggcgaacg
     2401 cgatcgagtg cgaccgcttc gttttgaaaa ttgctgacga gagttcgctc aagctcgacg
     2461 tcgggctcgc cctgcagatg cagattcaac gccttgatca cgatcgtgcg cggcgaacct
     2521 tcgggcgcgg cgttgtcgtt cgcgacgtag atctcggcat aactgcccct tccgagacat
     2581 tcgatgatgt cgtagcgccc gtctagtctg ctttgttgga gtttgagttc cgacatcgtt
     2641 tcgccctgat tcgcatcttt gatgcgtgat tattggatca gggttagggg gctgcagggc
     2701 tcgccgagct ggcgggaggt ttcgtcagct cttcgtagtg attgagtact ttccaacggt
     2761 ctctttgcgt gcgcacgctg acggcggcca ggccaagcac cgattctttt ttgatcgtgg
     2821 aattggcagg cgagggattc gcgtccgctt tcgcgatcgc ggcgtcaaac gctttgccgg
     2881 cttcgtcagt gttgcccgag agcaggttcg cgcggccgta gagatacaaa aagtcagtgt
     2941 gcggcgaatc taacggactc tgaacgccgg cgttcaccag ttccttctgc ggctccgtcg
     3001 ccagccatgc gcgcgggtcg tcatccacct gccgccgcat tcgttcgaat tgcgcgaagg
     3061 gttccggcgt tggagcaggg acagtcaagg tcaaaaccgg ctcctgcgac ggcttcgtcg
     3121 cgaggaaggg aattcgttcc ttgaagcgcg cgccggcgta gaacgctgcc gcgagtagaa
     3181 ccaaaaccag caacacacca aacacgcgcg ccaatccgct gccgccgcga cgcggctccg
     3241 cgacgttgag cgtcccagga ttcgggtccg cctgcgcgga cgcggcggga atcgagattc
     3301 tcgatcctgt tacgggactg ccgttcgact gcgtgccgat catcgtctgt tgtccaccgt
     3361 tctgcgccgc gtaggcagtt tgcgtctcgg gcgtgatcgt cggttcgagt tccgcgagcc
     3421 gttcatctgt tctaaccgga tcgccgactc gcaccacgac caccgtgaga ttgtcttcag
     3481 cgccacgctc gtaacaccgg cgcttcagtt cgcggcaaac ctcttcgaga tcattgttga
     3541 ctacgagcag ttgccgcagc tcgttgtcgg aaatgtgacg cgtgatgccg tc
//
LOCUS       DASWTX010000408         1963 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_375369, whole genome shotgun sequence.
ACCESSION   DASWTX010000408 DASWTX010000000
VERSION     DASWTX010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1963)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1963
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_375369"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1963)
                     /locus_tag="VGD38_06270"
     CDS             complement(<1..>1963)
                     /locus_tag="VGD38_06270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="lamin tail domain-containing protein"
                     /protein_id="HEY0727659.1"
                     /translation="FVEIYNNSDTDHTVAATDGSSGYALVASNGVARFVIPNGTVIPA
                     RGHYLGVNTIADSLGASPAGNGTTATGDATFTTDISDNAGVALFSVSNPANFTLANRF
                     DAVGSSSEANTLYREGTGYPALIPFSIDHSFVRKVPTAGTGIGLPVDSDDNNADFLFV
                     DTNGTSAGAGQRLGAPGPENLSGPTTVGNGIGNTRLDPAQADVDSPNVHRDFTSDPPN
                     NSTFGTISIRRTFTNNTGANITRLRFRVLDISTFPSPSAVADLRPRTSVATNVTLTDT
                     SNVLVQGTTLEQPPSQPNGGGFNSAMSAGTVSVGTPLANGASINLQFLMGIQQTGCYK
                     LAIIAESLPGAGSDVIVVSGDTQGGAGSCGAPTPTPGGTSLVISEFRLRGPNGAADEF
                     VEIYNNSDDAVNVAAADGSGGYALAGSDGIIRFVIPNGTIIPGRGHYLGVNSTGYSLG
                     SYPAGTGSTATGDATFVTNIPDNAGIALFKTSNTGNFSLANRLDAAGSTSEANTLYKE
                     GTGYPALIPFSIDHSFHRKVPSSGGAAGQPQDTGDNAVDFMFVDTNGTSAGAGQRLGA
                     PGPENMSGPRTRGTDIGHAVLDATQAEFDSPNVGRDFTSDPANNSTFGTISIRRTFTN
                     NTGGNITRLRFRVIDLTTFPAPSGIADLRP"
BASE COUNT          365 a          521 c          657 g          420 t
ORIGIN      
        1 ggacgcagat ccgctattcc gctcggcgcc gggaaggtcg ttagatcgat gacgcggaaa
       61 cgaagccgcg tgatgtttcc gccggtgttg ttagtgaacg tgcggcgaat cgagatcgtg
      121 ccgaacgttg aattgtttgc cgggtcgctc gtgaaatcac gtccgacgtt tggcgaatca
      181 aattcagcct gcgttgcgtc gagcacggcg tgaccgatgt cagttccgcg tgtgcgtggt
      241 ccagacatgt tttccggacc gggcgcgccg agacgttggc ccgcgcctgc gctcgtgccg
      301 tttgtatcga cgaacatgaa gtcaacagcg ttgtcgccag tgtcctgcgg ctggcccgca
      361 gcgccgccgc tcgaaggaac cttgcgatgg aagctgtggt cgatgctgaa cggaataagc
      421 gccggataac cggtgccttc tttgtaaagc gtgttggctt cactggtcga tccggcagcg
      481 tcgagccggt tggcgagact gaagttgccg gtgttgctcg tcttgaacaa ggcgataccg
      541 gcgttgtcgg gaatgttggt tacgaaagtg gcgtcaccgg tcgcggtgct gccggtaccc
      601 gccggatagc tgccgagtga gtagccggtt gagttgactc cgaggtaatg accgcgcccg
      661 ggaatgatgg ttccgtttgg aatgacgaaa cgaatgattc catcagaacc agccagcgca
      721 taaccgcctg agccatccgc cgcagcgaca ttaaccgcgt cgtcgctgtt gttgtagatc
      781 tcgacaaact cgtcggctgc gccgtttgga ccacgcaggc gaaactcgct gatgacgagc
      841 gacgtgccgc ccggtgttgg agtcggtgct ccgcagcttc cggcgccgcc ttgcgtgtcg
      901 ccgctgacga caatgacgtc actgccggcg cccggcagcg attcagcgat gatcgcaagc
      961 ttgtaacaac ccgtctgctg aatgcccatc aggaattgca gattgatgct tgcgccgttc
     1021 gcgagtggcg tgccgacgct gaccgtgcct gctgacattg cgctgttgaa gccgccgccg
     1081 tttggttgag atggtggttg ctcgagcgtt gtgccttgca cgagaacgtt cgacgtatca
     1141 gttaacgtca cgttggtggc gacggaagtg cgcgggcgaa gatccgcgac ggccgacggt
     1201 gaagggaacg tagagatgtc cagcacacgg aagcgcagac gcgtgatgtt tgcgccggtg
     1261 ttgtttgtga acgtgcgtcg aatggagatc gtgccaaagg tggagttgtt tggcggatcg
     1321 ctcgtgaagt cacggtgaac gttcggtgaa tcaacgtccg cttgtgccgg atcgagccgc
     1381 gtattcccga tgccgttgcc gacggtggtt ggaccagaga gattttctgg tccaggcgcg
     1441 ccgagacgtt ggcccgcgcc cgcgctggtg ccgttggtgt cgacgaaaag aaagtcggcg
     1501 ttgttgtcgt cgctgtctac cggcagaccg atgccggtgc cggcggttgg aaccttgcga
     1561 acgaaactgt gatcgatgct gaacggaatc aacgccgggt aacctgtgcc ttcgcgatag
     1621 agcgtgttgg cttcactcga ggaaccgacg gcgtcgaagc gatttgcgag cgtaaagttt
     1681 gcgggatttg aaacgctaaa cagcgccaca ccggcgttgt cggaaatgtc tgttgtgaac
     1741 gttgcgtcgc cggttgcggt cgtgccgttt cccgcgggag acgcaccgag cgagtcggcg
     1801 atcgtgttga cgcctaaata atgaccgcgt gcgggaatga cggtgccgtt ggggataaca
     1861 aaccgggcca cgccgtttga agcaacaagc gcataaccgg acgaaccgtc agtagcggcg
     1921 acggtgtggt ccgtgtcgct gttgttatag atctcgacga act
//
LOCUS       DASWTX010000409         4724 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_28704, whole genome shotgun sequence.
ACCESSION   DASWTX010000409 DASWTX010000000
VERSION     DASWTX010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4724
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28704"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..915
                     /locus_tag="VGD38_06275"
     CDS             <1..915
                     /locus_tag="VGD38_06275"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aspartate aminotransferase family
                     protein"
                     /protein_id="HEY0727660.1"
                     /translation="DGATACAYATGMAAVHAALIACDLKAGSTVLASQDLYGATTSLL
                     NSVFTSFGVKTVNTDFSDMDEVRRQAREIRPQVLVAETISNPLLKVCDIEATAEIARE
                     QGARLIIDNTFASPYLRQPLKLGADMVVHSATKYLGGHADVMGGIVVSRDEMDRPALF
                     SVMKLVGGVLGVWEAHEILRGLKTLAVRMERQCDNAQKLASRLSEHPQIARTHYPGLG
                     ALVSIEIKENTKEAAFRFMNALQLCVRSSSLGDVFTSVLHPATASHRDLVPARRQELG
                     IVDGLVRISVGIESIDDIIEDIEQALSA"
     gene            912..1334
                     /locus_tag="VGD38_06280"
     CDS             912..1334
                     /locus_tag="VGD38_06280"
                     /inference="COORDINATES: protein motif:HMM:NF025819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M67 family metallopeptidase"
                     /protein_id="HEY0727661.1"
                     /translation="MITIAEQQLSEIREHGIRDYPYECCGLLLGHFEPESKIVTETLP
                     ISNAREESAKRNRFLITPEELMKGERYARQHDLEIVGFYHSHPDSPAVPSQYDLEHAW
                     PTYSYIIVSTSADRANDLFSWEQEPDRSRFNQEEIQCQ"
     gene            1325..1585
                     /locus_tag="VGD38_06285"
                     /pseudo
     CDS             1325..1585
                     /locus_tag="VGD38_06285"
                     /inference="COORDINATES: protein motif:HMM:NF014636.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
     gene            1628..2779
                     /gene="moeB"
                     /locus_tag="VGD38_06290"
     CDS             1628..2779
                     /gene="moeB"
                     /locus_tag="VGD38_06290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_257790190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HEY0727662.1"
                     /translation="MPELSHEEILRYSRHLIMPEVGMQGQRKLKAASVLMIGTGGLGA
                     PVGMYLAAAGVGRIGIVDFDVVEESNLQRQIIHGTKDLGRRKIESARDRLRDINPHIE
                     IETHESRLTSHNAMHLFRNYDIIVDGTDNFPTRYLVNDACVLSGKPNVYGSIFRFEGQ
                     ASVFWAEKGACYRCLYPEPPPPGLVPSCAEGGVLGVLPGIVGAIQANETIKIILGAED
                     LLINRLLLFDAWTMKFREFKLRKDPKCPVCGENPTITKLIDYEEFCGVAPHQLPTSDS
                     KLEEITASDLNQRRVRGDKIQIIDVREPHEFEIARMPGTKLIPLGQVVTRMNEIDPEV
                     DTIVHCKGGVRSAKAIEALKRAGFSGRLINLKGGITAWSEDVDPSVAKY"
     gene            complement(2785..3870)
                     /locus_tag="VGD38_06295"
     CDS             complement(2785..3870)
                     /locus_tag="VGD38_06295"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY0727663.1"
                     /translation="MAEGNAQRTRVLPTESIDAPPQKLLWSSQKLFQIRETEYLTSQN
                     GPFRLSGDFATGQYFTTPIISDGTLFVTAWVNNAYFFAIDAVTGKQLVTLQFERNEVS
                     APAVLGHLVFFGTQLGKLYAYDLKQRKPVWFYEQKGSSFAYTEPAIDDGVVYFCGSES
                     GLFAFAADTGALKWTFKSDKPLYRPAIKGDDLVVVSLTGLIAFDKKTGTKKWEAKVGR
                     EYIGPAILGDQVFVSHVEGEIRAHALQDGALKWKSKKDGGARTAVAVHDGVVIYGEQY
                     GNIVALDAATGVEKWRFKTKKPCGDPVIAGSTLYVSCKDQRLYALNPQTGESKWQFEQ
                     KKGYPTPTVANGIVYFLGNDGLLQAMQ"
     gene            complement(3948..>4724)
                     /locus_tag="VGD38_06300"
     CDS             complement(3948..>4724)
                     /locus_tag="VGD38_06300"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY0727664.1"
                     /translation="IVYIYERLSQGLHQFRNPSPGTSINPSFYVSNGYLVYMPDIVYT
                     IGYPGQSALKCVLPGIQAVVDKGFVNEDAIGIQGHSWGGYQIAYMVTQTNRFKAAAPG
                     ALVANMTSAYSGIRWGTGLPRQFQYERTQSRIGGSLWDYPLRFLENSPIFRADRVETP
                     LLMLHNDEDDAVPWYQGIEYFLALRRLNKEAYMFNYNGEKHGLRKRINQKDYTRRLQE
                     FFDHFLKGAPAPEWMEKGIPYLQREKEKEKYRASEEDVQP"
BASE COUNT         1018 a         1370 c         1356 g          980 t
ORIGIN      
        1 gacggcgcaa cggcttgcgc gtacgcgacc ggaatggccg cggtccatgc ggcgctgatc
       61 gcgtgcgatc taaaagccgg ttcaactgta ctcgcttcgc aagatctcta cggcgcgacg
      121 acgagcttgt tgaattctgt gtttacttct ttcggagtta agactgtaaa cacggatttc
      181 agcgatatgg atgaagtaag aagacaggcg agggagatac gtccgcaggt gttagtggcg
      241 gaaacgatct caaacccgtt gctgaaggtt tgcgacatcg aagccaccgc ggagatcgcg
      301 cgcgagcagg gcgcgcggct gatcatcgac aacacgtttg cctcgccgta cctgcgccag
      361 ccgctgaagc taggcgccga catggtggtc catagcgcga cgaagtatct cggcggacac
      421 gccgacgtga tgggcggcat cgtcgtctcg cgcgatgaga tggatcgccc cgcgttgttc
      481 agcgtgatga aactcgtcgg cggcgtgctc ggcgtttggg aagcacacga aatcctgcgc
      541 ggactgaaga cgctggccgt acgcatggaa cgccaatgtg acaacgcgca aaagctcgcg
      601 agccgtctca gcgagcaccc gcagatcgcg cgcacacatt accccggcct cggcgcgctc
      661 gtttcgatcg agataaaaga aaacacgaag gaagcagcgt ttcgctttat gaacgcgctg
      721 caactctgcg tgcgctcgtc gagcctcggc gacgtgttca cgagcgtgct gcacccggcc
      781 acggcgtcgc atcgggatct tgttcccgcg cgcaggcagg aactcggcat cgtcgacggc
      841 ctggtacgca tttcagtggg aatcgaaagc atcgacgaca tcatcgaaga tatcgaacag
      901 gcactttccg catgatcacg atcgccgaac aacagttaag cgagattcgc gagcacggca
      961 tccgcgatta cccgtacgaa tgctgcggcc tgctactcgg ccacttcgaa ccggaatcaa
     1021 aaatcgtgac cgaaacgctg cccatctcga atgcacgtga agaaagcgcc aaacgaaacc
     1081 gcttcctgat cacgcccgag gagctgatga agggcgagcg ctacgcgcgc cagcacgatc
     1141 tcgaaatcgt cggtttctat cattcgcatc ccgactcgcc ggcggtgccg tcgcagtacg
     1201 acctcgagca cgcctggccc acgtattcat acatcatcgt ttcgacaagc gccgatcgcg
     1261 ccaacgacct gttctcgtgg gaacaggagc ccgatcgctc gcgcttcaac caggaggaga
     1321 ttcaatgcca gtaaccatca ccattccggc gccgctcaga cagttcgccg gtggccagtc
     1381 gcagatcgtc gtcgaagcaa aaaccgcggg cgaagcactc gatctgctca cgtcaacgca
     1441 ctcggcgctg cgccgccatc tcttcaacga tcagaacgcg ctgcgcaact tcgtcaacgt
     1501 ctatctcaac gacgaagaca ttcgtcacgc ctccggtccg gacacgcccg tcaaggacgg
     1561 cgacacgatc atgatcgtgc cttcaatcgc gggaggctcc gttattgaat cggaagtcgg
     1621 cgagtcgctg ccggagttgt cgcacgaaga gatcctgcgt tacagccgtc acctgatcat
     1681 gccggaagtc ggcatgcagg gacaaagaaa actcaaagcc gcgagcgtgc tgatgatcgg
     1741 caccggcgga ctcggcgcgc ccgtcggcat gtatctcgcc gcggccggcg tgggccggat
     1801 cggcatcgtc gatttcgacg tggtcgaaga atcaaacctg caacgccaga tcattcacgg
     1861 cacgaaagat ctcggccgtc gcaagatcga atccgcgcgc gatcgcctgc gcgacatcaa
     1921 cccgcacata gagatcgaaa cacacgagtc gcgtttgacg agtcacaacg cgatgcatct
     1981 ctttcgtaac tacgacatca tcgtcgacgg caccgacaac tttccgacgc gctatctcgt
     2041 caacgatgcg tgcgtgctaa gtggcaaacc aaacgtctac ggttcgatct ttcgctttga
     2101 aggacaggcc agtgtgttct gggctgagaa gggcgcgtgc tatcgctgcc tgtatccgga
     2161 gccgccgccg ccgggactgg tgccctcgtg tgcggaaggc ggtgtgctcg gtgtgttgcc
     2221 gggaatcgtc ggcgcaattc aggcaaacga gacgatcaag atcattctcg gcgcggaaga
     2281 tctgctgatc aatcgtctgc tgttgtttga tgcgtggacg atgaaatttc gcgagttcaa
     2341 actgcggaag gatccgaagt gcccggtctg tggtgagaac ccgaccatca ccaaactaat
     2401 cgactacgaa gaattctgcg gagtggctcc gcatcagctt ccgacgtcgg attcaaaact
     2461 cgaagagatc accgcgagcg atctcaacca gcgtcgcgtg cgcggcgaca agattcagat
     2521 catcgacgtg cgcgagccgc acgaattcga gatcgcgcgc atgccgggaa cgaagttaat
     2581 tccgttgggc caggtggtga cgcggatgaa cgaaatcgat ccggaagtgg acacgatcgt
     2641 tcattgcaag ggcggcgtgc ggagtgcgaa agcgatcgag gccctgaagc gcgcgggctt
     2701 ctcgggccgt ctgatcaact tgaaaggcgg catcaccgcg tggtctgaag acgtcgatcc
     2761 gagcgtggcg aagtactgaa ctgtttactg catcgcctgt aacagaccgt cgttgccgag
     2821 aaagtagacg ataccgttcg cgaccgtggg agttggataa ccctttttct gttcaaactg
     2881 ccacttcgac tcgccggtct gtggattcag tgcatagaga cgctggtctt tacaactgac
     2941 gtacagagtc gaacccgcga tgaccggatc gccgcagggt ttcttcgttt tgaatctcca
     3001 cttctcgacg cccgtggcgg cgtcaagtgc gacaatgttg ccgtactgct cgccgtagat
     3061 cacaacgccg tcgtggaccg cgacggcagt tcgcgcgccg ccatcttttt tcgacttcca
     3121 tttcaacgcg ccgtcctgga gtgcgtgggc gcgtatctcg ccttcgacgt gcgacacgaa
     3181 cacttgatcg ccgaggatcg cgggaccgat atactcccgg cccactttcg cttcccattt
     3241 cttcgtcccg gttttcttat cgaaggcgat cagtccagtc agactaacaa ccacgaggtc
     3301 gtcgccttta atcgccggcc ggtagagcgg tttgtctgac ttgaaggtcc atttgagcgc
     3361 gccggtatca gcggcaaacg caaacagtcc cgattcggaa ccgcagaagt aaacgacccc
     3421 gtcgtcgata gccggttccg tatacgcgaa cgacgatccc ttctgctcgt aaaaccagac
     3481 cggttttcgc tgtttcaagt cgtaggcata aagttttccg agttgcgtac caaagaacac
     3541 gagatggccc agcactgcgg gcgccgaaac ttcgttgcgc tcgaattgca gcgtgacgag
     3601 ttgtttaccc gtgaccgcat cgatcgcaaa gaagtaagcg ttgttcaccc acgcggtaac
     3661 gaagagtgtt ccatcagaaa tgatcggagt cgtgaagtat tggccggtcg cgaagtctcc
     3721 actgagcctg aaaggaccat tctgactggt gagatattct gtttctctga tctgaaacag
     3781 cttttgcgag ctccacaaca gcttttgcgg tggcgcatcg atgctctcgg ttggaagcac
     3841 tcgcgtgcgt tgtgcattgc cctcggccat cgccggttgt gagatggccg aggtttgtga
     3901 aaggaaaatc agcccgcaaa taagcaaaat tcgggttgct aacattttca tggttggacg
     3961 tcttcttcgc tggcgcgata tttctccttt tctttctcgc gctggaggta cgggatgcct
     4021 ttctccatcc actcaggcgc gggtgcgcct ttgaggaagt ggtcgaagaa ttcctgcaag
     4081 cggcgcgtgt agtccttctg attgatccgc ttgcgcaagc cgtgcttctc gccgttgtag
     4141 ttgaacatgt acgcctcttt gttgaggcgg cgtagcgcga ggaaatactc gattccctgg
     4201 taccacggta ccgcatcgtc ctcgtcgttg tgaagcatta ataacggtgt ctcgacgcga
     4261 tccgcgcgaa agatcggcga gttctcgaga aagcgcagcg ggtaatccca caagctgccg
     4321 ccgatgcgcg actgcgtgcg ctcgtattga aactgtcgcg gcaaacccgt gccccaacga
     4381 ataccgctgt aagcgcttgt catgtttgcc accaacgcgc cgggcgccgc ggctttgaag
     4441 cggttggtct gcgtcaccat gtacgcgatc tggtaaccgc cccaactgtg tccctgaatc
     4501 ccgatcgcgt cctcgttcac aaatcctttg tccaccaccg cctgaattcc cggtaacacg
     4561 catttcaaag cgctttgtcc gggatagccg atcgtgtaaa cgatgtcggg catgtagaca
     4621 aggtaaccat tgctgacgta gaacgacgga ttgatcgacg tgcccggcga cggatttcgg
     4681 aactggtgca ggccctgcga caggcgctcg taaatgtaga cgat
//
LOCUS       DASWTX010000410         1967 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_354065, whole genome shotgun sequence.
ACCESSION   DASWTX010000410 DASWTX010000000
VERSION     DASWTX010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1967)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1967)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1967
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_354065"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..384)
                     /locus_tag="VGD38_06305"
     CDS             complement(<1..384)
                     /locus_tag="VGD38_06305"
                     /inference="COORDINATES: protein motif:HMM:NF024927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727665.1"
                     /translation="MEVLHWDGRLDNRSDLLSRLRETLRGESSDAAIARAAYERWGTE
                     GLVHLIGDWSLVIRDHETTVLASDFAGVRPLYYHVQQGRVQWSSSLQSLIEDTGITEL
                     DEHYIAGFLTFGGCPNRTPYKGIYSV"
     gene            complement(395..769)
                     /locus_tag="VGD38_06310"
     CDS             complement(395..769)
                     /locus_tag="VGD38_06310"
                     /inference="COORDINATES: protein motif:HMM:NF033537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lasso peptide biosynthesis B2 protein"
                     /protein_id="HEY0727666.1"
                     /translation="MTRLVFRALYEIVRYEVMLWLLGSGRVLSQLRRQAISTRAAGPG
                     VEKTICDAVLLATCFYWKPVLCLQRAVCTVRLLRRHGIHARLVIGYRPSPFFSHAWVE
                     VDGRVVYGSAAYQQRLKPLHVA"
     gene            complement(766..1056)
                     /locus_tag="VGD38_06315"
     CDS             complement(766..1056)
                     /locus_tag="VGD38_06315"
                     /inference="COORDINATES: protein motif:HMM:NF017239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PqqD family protein"
                     /protein_id="HEY0727667.1"
                     /translation="MTNQTTTISFAVSPEAVRSFHDDGVVILHAGNGRMFTSNDTGAR
                     IWRGIEQQLSLESIASEISNAYHIARATAREHTVGFLRALEQQALIRIEVAS"
     gene            complement(1145..>1967)
                     /locus_tag="VGD38_06320"
     CDS             complement(1145..>1967)
                     /locus_tag="VGD38_06320"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0727668.1"
                     /translation="NRNGIWDRQGVVFMVTQQPYFYQTRWFVAAMVALGLLLMFLLYR
                     LRVAQISRVLSARFDERLAERTRVARELHDTFLQTVQGSKMVADHALKNSADHTRLVR
                     AMEQLSTWLAQATEEGRAALQSLRASTTERNDLAQAFRRAIDECRVRTNAEISFAVNG
                     QSREMHPVVRDEIYRIGYEAIRNACAHSGGNRVEITLEYAHDLTLRVTDNGAGIEPDI
                     AAQGKDGHFGLRGMRERAERIGSKFTLVSSPATGTLITLVVPGRVAFRTGIPLTL"
BASE COUNT          420 a          618 c          538 g          391 t
ORIGIN      
        1 aaccgagtag atgcctttgt acggtgtgcg attcgggcag ccgccaaacg tcagaaatcc
       61 ggcgatgtag tgctcgtcga gttccgtgat tcccgtgtcc tcaatcagag actgcaaaga
      121 gctggaccac tgaacgcggc cctgttgcac gtgatagtaa agaggacgaa ctcctgcaaa
      181 gtcactggcg agcacggtgg tctcgtgatc gcgaatcacc aaactccaat ccccgatcag
      241 gtgaaccaaa ccttcagttc cccatcgttc gtacgcggcg cgcgcaatcg ctgcatcact
      301 ggactcgcca cgcaaagtct ctcttaagcg ggacaacaaa tcggatcgat tatccaagcg
      361 cccatcccaa tgcaggactt ccatctcatc cctcctacgc aacgtgcagc ggcttgagcc
      421 gttgttgata agcagccgag ccgtacacga cccgcccgtc cacttccacc cacgcgtgtg
      481 aaaagaacgg cgacggccga taaccgataa ccagacgcgc gtgaatgccg tgtcttctca
      541 gcaatcggac cgtgcaaact gcccgttgca ggcacaacac cggcttccag tagaagcacg
      601 tcgccagcag gaccgcgtcg cagatcgtct tctccacccc cgggccggct gcacgagtcg
      661 aaatggcctg gcgtctcaac tgcgacagaa cgcgcccgga gcccagtaac caaagcatca
      721 cttcgtagcg cacgatctcg taaagcgccc tgaacacgag ccttgtcatg acgcgacctc
      781 gattctgatc agcgcctgct gctcgagcgc tcttagaaaa ccaaccgtgt gctcgcgcgc
      841 ggtcgctcgc gcaatgtgat acgcgttgct gatctcgctc gcgatactct ccaacgacag
      901 ttgctgctcg atcccgcgcc agatgcgcgc gccggtgtcg ttggacgtaa acatgcgccc
      961 gtttccagcg tgcaagatca cgactccgtc gtcgtgaaat gaacgcaccg cttcggggct
     1021 cactgcgaaa ctgattgttg tggtttgatt cgtcatgggc agcaagatac ccccgcccga
     1081 agattccaaa cacactcgta tcggtagaat tgaggccgcg cttttccgtg gtggcgggat
     1141 actactaaag ggttagaggg atgccggtgc gaaacgcgac gcggccgggt acgacgaggg
     1201 taatgagggt gccggtagcc ggcgaactga ccaacgtgaa cttactgccg atgcgctcgg
     1261 cgcgttctct catgccgcgc agtccgaaat gaccgtcctt gccttgtgct gcgatgtcgg
     1321 gttcgattcc cgcgccattg tcggtgacac gcaacgtcag atcgtgcgca tactcgagcg
     1381 ttatctccac tcgattaccg ccggagtgcg cgcacgcatt tcggatcgct tcgtatccga
     1441 tccggtaaat ctcgtcacga acaaccgggt gcatctctct cgattgtccg tttacggcaa
     1501 acgagatctc cgcgttcgtg cgcacgcggc attcgtcgat cgcccgccga aacgcctggg
     1561 cgagatcgtt tctttcagtc gttgaagctc gcaaagattg aagcgcggcg cggccttctt
     1621 cagtggcctg ggccaaccac gtcgacaact gttccattgc acgcaccaaa cgcgtgtggt
     1681 ccgcggagtt cttcaacgcg tggtccgcaa ccatcttgct gccctggacc gtttgcaaaa
     1741 acgtgtcgtg cagctcgcgc gcgacgcgag tgcgttcggc gagtcgttcg tcaaaccgcg
     1801 cgctcagcac gcgggagatt tgggccacgc gcaaacggta gagcaaaaac atcagcagca
     1861 atcccagcgc aaccatcgcc gcaacgaacc agcgtgtttg atagaagtaa ggttgctgcg
     1921 tgaccatgaa aaccactccc tgccggtccc agatgccatt ccgattg
//
LOCUS       DASWTX010000411         1986 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_265182, whole genome shotgun sequence.
ACCESSION   DASWTX010000411 DASWTX010000000
VERSION     DASWTX010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1986
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265182"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..229)
                     /locus_tag="VGD38_06325"
     CDS             complement(<1..229)
                     /locus_tag="VGD38_06325"
                     /inference="COORDINATES: protein motif:HMM:NF019403.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heparan-alpha-glucosaminide N-acetyltransferase
                     domain-containing protein"
                     /protein_id="HEY0727669.1"
                     /translation="MPTSPDAVATTSRLLSLDVFRGITIAGMVLVNNPGTWEHIYWPL
                     QHAQWHGWTPTDLVFPFFLFIVGVSIALALGS"
     gene            290..1084
                     /locus_tag="VGD38_06330"
     CDS             290..1084
                     /locus_tag="VGD38_06330"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3471 domain-containing protein"
                     /protein_id="HEY0727670.1"
                     /translation="MIHVPDVRATVEWYKSIGFEVVATYGDETGDNFSFAIVSFGESR
                     VMFNTDGEPSDKGRREVDLYVYTDKVDELYESLKDRVDVIEQPHDTFYGQRELIIRDL
                     NRFWITFGQQTPFATLVEGIYEGDVERVRKALQTKAVGHDSLNVAFAFASATEKRNEE
                     VLKLLLDAGAQPPPEIDTETLESYVGSYKGGNGFGVEITVKNNRLFGATPGNQPMSLW
                     PLDQRTFKPVAMDGATLKFHVENRKAVAVTLDHGGHPIDLVKTRLD"
     gene            complement(1081..>1986)
                     /locus_tag="VGD38_06335"
     CDS             complement(1081..>1986)
                     /locus_tag="VGD38_06335"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY0727671.1"
                     /translation="IPQLVLAVEHYNRIIRMLQAGEAVKMTVDLGVAWQEADLMGYNT
                     IAEIPGTDLKDEVVMLGGHLDSWHSGTGATDNAAGVSVAMEAVRIIQALGLKPRRTIR
                     IALWSGEEQGLLGSRAYVAEHFGSLQTPPATTSAVPATGGASTNAMGGGAGNGNGNGA
                     TAQQVGPVLVKKPAYDKFSAYFNLDNGTGKIRGVYLQGNEGVRGIFRQWLTPFRDLGA
                     STLSISNTGGTDHLAFDGIGLPGFQFIQDEIEYDTRTHHSNQDTFDRIQADDMKQAAT
                     IMAAFVYQTAMRDEKLPRKPAPGSR"
BASE COUNT          424 a          570 c          599 g          393 t
ORIGIN      
        1 gactgccgag cgcgagcgcg atcgacacgc cgacgatgaa aagaaaaaac ggaaacacca
       61 gatcggtcgg cgtccagccg tgccactgcg cgtgctggag cggccagtag atgtgttccc
      121 aggtaccggg attgttgacg agcaccatgc cggcgatcgt gattccacga aacacgtcga
      181 gggaaagcag gcgcgatgtt gttgcgacag cgtcagggga tgttggcatc ggcggcgaat
      241 tctagcacaa tcaaaatcca tgtcatccga ttcgaaaagc gtcgtaccga tgatccacgt
      301 ccccgacgtg cgcgcgacgg tcgagtggta caagagcatc ggcttcgaag tcgtcgcgac
      361 ctacggcgac gaaaccgggg acaacttcag ttttgcgatc gtgtctttcg gcgagtcgcg
      421 agtgatgttc aataccgacg gcgagcccag cgacaaaggc cggcgcgaag tcgatcttta
      481 cgtctacacc gacaaagtcg acgagcttta cgagagtctg aaagatcgcg tcgacgtgat
      541 tgaacaaccg cacgacacgt tttacggcca gcgcgaactg attatccgcg acctgaaccg
      601 cttctggatc acgtttggcc agcaaacacc gttcgccacg ctggtcgaag gtatttatga
      661 aggtgatgta gagcgcgtgc gtaaagcgct tcagacgaaa gctgtcgggc acgactcgtt
      721 gaacgtagcg ttcgcgtttg catcagcaac ggaaaagagg aatgaagagg tcctgaaact
      781 gctgctcgac gcaggagcgc agccgccgcc ggagatcgat accgaaacgc tcgagtctta
      841 tgttgggtcg tacaaaggcg ggaacggttt tggcgttgaa atcacagtga aaaataaccg
      901 gcttttcggc gcgacacccg gcaatcaacc aatgagtttg tggccgttgg accagcgcac
      961 tttcaaaccc gtcgccatgg acggagccac cctgaaattc cacgtcgaaa acaggaaggc
     1021 cgtcgcggtc acgctggacc acggcggcca cccgatcgac ttagttaaaa caagactgga
     1081 ttagcgcgag ccgggcgccg gtttgcgcgg cagcttctcg tcgcgcatgg cggtctggta
     1141 aacaaacgcc gccatgatcg tcgccgcctg tttcatgtca tccgcctgaa tgcgatcgaa
     1201 cgtgtcctgg ttcgagtggt gcgtgcgcgt gtcgtattcg atctcgtcct gaatgaactg
     1261 aaatcccgga agaccaatcc cgtcgaacgc gaggtgatcg gtgccgccgg tgtttgagat
     1321 cgataacgtc gacgcgccga gatctctgaa cggcgtgagc cattgacgga agatgccgcg
     1381 cacgccttcg ttgccttgca ggtagacgcc gcgaatcttg ccggtgccgt tgtcgagatt
     1441 gaagtacgcg ctgaacttgt cgtaagcggg tttcttcacg agcactggtc caacctgctg
     1501 cgctgtggca ccgttgccgt ttccgttacc agcgccgccg cccatcgcgt tagtgctcgc
     1561 gccgccggtt gcgggcactg cggaagttgt tgcgggtggt gtttgcagac tgccgaagtg
     1621 ttcggcaacg taagcgcgcg aaccgagcag cccctgctct tcaccgctcc acaacgcgat
     1681 cctgatcgtg cgtcgcggtt tcaaaccaag cgcttgaatg atgcgcacgg cttccatcgc
     1741 gactgaaaca cccgcggcgt tgtcggtcgc gccggtgccg gagtgccacg aatccaggtg
     1801 accgccgagc atcacgacct cgtctttgag atcggtgccg ggaatctccg cgatcgtgtt
     1861 gtagcccatc agatccgctt cctgccacgc gacgccgaga tcgaccgtca tcttcacggc
     1921 ctcgcctgcc tgcagcatgc ggatgatgcg attatagtgc tcgactgcga gcacgagttg
     1981 cggaat
//
LOCUS       DASWTX010000412         1513 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_134715, whole genome shotgun sequence.
ACCESSION   DASWTX010000412 DASWTX010000000
VERSION     DASWTX010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134715"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1513)
                     /locus_tag="VGD38_06340"
     CDS             complement(<1..>1513)
                     /locus_tag="VGD38_06340"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0727672.1"
                     /translation="PPLVKAAVDLYLLPDPTHATEGYTLVIKQTAERFGFGGQAASGV
                     VFISLLLLLANFAAMLVLYLESFMVQRMGQHVMYDLRNEIFAHLQRLPLKFYDRNPVG
                     RLMSRMTSDVEALNELFSAVVVSFFGDLTMLLYVIFWMFLLDWRLALVSLLILPPMAA
                     LTIWFRLRSRTAFRAVRLHLARISTFLQERLTGMSVVQLFNREQSELQKFKDINRDYR
                     KANVDAIFYNAVFFPAIDIIAAVGMALIIWYGGGGVLQGVVTLGTIIAFMQMAQMLYE
                     PIGDMSERYNLLQSGMSASERIFQLLDEPVTTQSPKEAAPAGSVRGHIEFRNVWFAYH
                     NEDWVLKDVSFVVQPGESVAFVGHTGAGKTTITNLLLRFYEIQRGQILLDGVDIRNIH
                     PAELRARFSIVPQDGFLFSDDIAGNIRLGNTNITDERLREAARQVNADGFINKLSSKY
                     STTLQERGAGISVGQKQLISFARALAFNPRVLILDEATSSIDTETEVLIHDAVK"
BASE COUNT          311 a          375 c          485 g          342 t
ORIGIN      
        1 gcttcaccgc gtcgtgaatc aggacttcag tctcggtatc gatggaactg gttgcttcgt
       61 cgaggatcag gacgcgcggg ttgaacgcga gcgcgcgtgc gaagctgatc agttgtttct
      121 ggcccacaga gatgccggcg ccacgctctt gcagcgtggt ggaatacttg ctgctcagtt
      181 tgttgataaa gccgtcggcg ttaacttggc gcgcggcttc gcgcagtctt tcgtcggtga
      241 tattggtgtt gccgagtctg atgttgcccg cgatgtcgtc tgagaaaaga aaaccgtcct
      301 ggggcacgat gctgaaacgc gcacgtaact ctgcggggtg gatgttgcgt atgtcgacgc
      361 cgtccagaag tatttgaccg cgctggattt cgtaaaatcg cagtagaagg tttgtgattg
      421 tggttttgcc tgcgcctgtg tgaccgacga acgccacgct ttcgcccggt tggaccacga
      481 atgaaacgtc ttttagtacc cagtcttcgt tgtggtaggc aaaccagacg ttgcgaaatt
      541 caatgtgtcc gcgcacgctg ccggcgggcg ctgcttcttt cggcgattgg gttgtgaccg
      601 gttcgtcgag cagttggaag attcgttccg aagctgacat tcccgattgc agcaggttgt
      661 atcgctcgct catgtcgcca atcggctcgt aaagcatctg cgccatttgc atgaaagcga
      721 tgatggtgcc gagcgtcacc acgccttgca gcacgccgcc tccgccgtac caaatgatta
      781 gcgccatgcc gacggcggcg atgatgtcga tggcggggaa gaaaactgcg ttgtagaaga
      841 tcgcgtcgac gtttgctttg cgatagtcgc ggttgatgtc tttgaacttt tgcagttcgc
      901 tctgttcgcg attgaagagt tggaccactg acatgccggt caggcgttcc tgcaggaacg
      961 tgctgattcg cgctaagtgc aggcggacgg cgcgaaaagc cgtgcgtgag cgtagccgga
     1021 accagatggt tagagcggcc attggcggca gtattaataa ggagacgagt gctaagcgcc
     1081 agtcgagtaa gaacatccag aagatgacgt acaggagcat cgtcaggtcg ccaaagaacg
     1141 agacgacgac ggcgctgaac agttcgttga gtgcttcgac gtcgctggtc atgcggctca
     1201 tcagacggcc gacggggttg cggtcgtaaa acttgagcgg gagccgctgc aagtgcgcga
     1261 agatttcgtt gcgcaggtcg tacatgacgt gctggcccat tcgttggacc atgaaggact
     1321 cgagatacag cacgagcatt gcagcgaagt tggcgagcag cagcaacagg gagatgaaga
     1381 cgactcccga cgctgcctga ccgccgaaac cgaatcgttc cgcagtctgt ttgatgacga
     1441 gcgtgtagcc ttctgtggcg tgcgttgggt cggggagtag gtacagatcg accgcggcct
     1501 taactaaagg agg
//
LOCUS       DASWTX010000413         2553 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_156803, whole genome shotgun sequence.
ACCESSION   DASWTX010000413 DASWTX010000000
VERSION     DASWTX010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2553
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156803"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..569
                     /locus_tag="VGD38_06345"
     CDS             <1..569
                     /locus_tag="VGD38_06345"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0727673.1"
                     /translation="ALNLYQKGTAAVKKGDSKAAVQFFTDAIAAYPNFPVALSDLGLQ
                     YMKLNQMDKAAETYEQLIKLKPADPTAHLNLGIARYNLKKFEEAETHLRKAVELKATG
                     PMAHYYLGMTLVGLKRHSEALPEFEATVANGGENIALAHRYLGGLYMSANKPQQAADE
                     LEKYLKLDPKAPDAERIKGTIKDLRSKQ"
     gene            complement(570..1229)
                     /gene="ribA"
                     /locus_tag="VGD38_06350"
     CDS             complement(570..1229)
                     /gene="ribA"
                     /locus_tag="VGD38_06350"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: protein motif:HMM:NF001591.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HEY0727674.1"
                     /translation="MEITTSQKSAVGTCCDEVQTGTVERVAVANLPTEWGDFRIAAYR
                     SLTTNEEYVVLFKGEMQRDVPTLVRIHSQCLTGDVFGSTKCDCGRQLHQTMQMINQEG
                     RGAIVYQQQEGRGIGIVNKIRAYALQDQGADTVEANVRLGLEVDLRDYKQCAEILYDL
                     GLCKVKVISNNPLKLRALEESGLKIVERVSIEVDATENAAGYLRTKKEKLGHLLDLKR
                     T"
     gene            1310..2296
                     /locus_tag="VGD38_06355"
     CDS             1310..2296
                     /locus_tag="VGD38_06355"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEY0727675.1"
                     /translation="MTSHYDDTDSPTQVGEISGAEHSRITERRPVLIALGGELLATPI
                     PLELPEVTLGRALDAHVRINDQKASRLHACITTEVDPKSGSTLFKVKDLNSTNGTRVN
                     GRKITEAVLNHGDKILVGNQLFRFELLDEIDRAFQQQIHRLIGHDELTGLLSSKSFFT
                     ELRREAARAEELSHPFCVLMMDLDHFKSVNDNYGHMVGNRTLQDIGVIIKSALRTGDV
                     AARFGGEEFAAFLLDADYLQGLVAAERVRRAVEEAVFSATADAAHPSAARFHLTVSIG
                     VACFPDDDRDPIRLVELADSALYRAKRNGRNVTCAYRHSLALNEGPLRPRRE"
     gene            2349..>2553
                     /locus_tag="VGD38_06360"
     CDS             2349..>2553
                     /locus_tag="VGD38_06360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727676.1"
                     /translation="MTSFAITSTSRVSFFAVNSDLNLASKPFSNRLLPWAVTAIILFI
                     SAIGLVVVVRLTTVANSQAQALQL"
BASE COUNT          561 a          746 c          709 g          537 t
ORIGIN      
        1 aagcgttgaa cctttatcag aagggcacgg cagcggttaa gaaaggcgac agcaaagcag
       61 ccgtccagtt tttcactgac gccatcgcgg cttatccaaa cttccccgta gcgctcagcg
      121 acctcggcct ccagtacatg aagctcaatc agatggacaa ggccgccgag acttacgaac
      181 agttaataaa gttgaagccc gcggatccga cggctcatct caatctcggc atcgcgcgct
      241 acaacctgaa gaagtttgaa gaagccgaga cccacctgcg caaagccgtg gagttgaagg
      301 ccactggtcc aatggcccac tactacctcg gcatgacgct cgtcggcctc aagcgccaca
      361 gcgaagcgct tcccgagttt gaagcgacgg tcgcgaatgg cggcgagaac atcgcgctgg
      421 cgcaccgtta tctcggcggg ctttacatga gcgccaacaa gccgcagcag gcggctgacg
      481 aattggagaa gtatttgaaa ctcgatccga aggctccgga tgcggaacgg atcaagggaa
      541 cgatcaagga tttgagaagt aagcagtaat taagtgcgct tcagatccag caggtgacca
      601 agtttctctt tcttggtgcg caggtaacca gcggcgtttt ccgtcgcgtc gacttcaatc
      661 gaaacgcgct cgacgatctt cagtcccgac tcttcgagcg cgcgtagttt gagcggatta
      721 ttagagatca ctttcacctt gcacaagccg aggtcgtaaa ggatctccgc acactgtttg
      781 taatcgcgca aatcgacttc cagcccgagc ctcacattag cttcgacggt atcggcgccc
      841 tggtcctgaa gcgcgtaagc gcgaatcttg ttgacgatgc cgatgccgcg tccttcctgt
      901 tgctggtaga cgattgcgcc acggccttcc tggttgatca tctgcatcgt ctggtgtaac
      961 tggcgcccac agtcacactt ggtggaacca aagacgtcgc cggtcaaaca ctgcgaatga
     1021 atccggacga gcgtcggcac atcgcgctgc atctcgcctt taaataggac cacgtactct
     1081 tcgttggtgg tcagcgagcg ataggccgcg atacgaaagt cgccccattc ggtgggcaaa
     1141 ttggcgactg cgacgcgttc gacggtgccc gtttggactt cgtcgcaaca ggttccaaca
     1201 gccgattttt gtgatgttgt tatttccatg gctgctacca gcagggtagt cagagtaaaa
     1261 ttgggttggg cgattataaa aggaagagat aacgcccaca agcgaacaca tgaccagtca
     1321 ctacgacgat accgattcgc cgacccaggt cggggagatt tccggcgccg agcattcgcg
     1381 cataaccgaa cgccggcccg tgctcatcgc cctcggcgga gaactcctcg ccacgcccat
     1441 tcctctcgaa cttccggaag tgacactggg ccgcgcgctc gatgcgcacg tccggataaa
     1501 cgatcagaag gcctcgcggc tgcacgcgtg tatcaccact gaagtcgatc ccaaatcagg
     1561 ctcgaccctg ttcaaggtca aggatttgaa ctcgaccaac ggcacgcggg tcaatggccg
     1621 taagattacc gaagccgtac tgaaccacgg tgacaagata ctcgtcggca accaactctt
     1681 ccggtttgag ctcctcgacg aaatcgatcg cgcctttcaa cagcaaatac accggctcat
     1741 cggtcacgac gagttgacgg gtctgctgtc gagcaaatcc ttctttactg agctgcgacg
     1801 cgaagccgcg cgcgccgaag agctttcgca tccgttctgc gtgttgatga tggatctcga
     1861 tcatttcaag tccgtcaacg acaactacgg ccacatggtc ggcaatcgaa cgttgcagga
     1921 catcggcgtg atcattaaat ctgcgttgcg taccggtgac gtagcagcgc gttttggcgg
     1981 cgaggagttt gccgcgtttc tgctcgacgc tgattatttg cagggactgg tcgccgctga
     2041 gcgtgtgcgc cgcgccgtcg aagaggcagt tttctcggcc acggcagatg ccgcgcatcc
     2101 aagtgcggcg cgttttcatc tgaccgtgag tatcggcgtc gcgtgctttc ccgatgacga
     2161 ccgcgacccg atccggctgg tcgagctggc cgactcggcg ctctatcgcg ccaagcgaaa
     2221 cgggcgcaac gtgacctgcg cctatcgtca ctcgctggca ctgaacgaag gcccgctgcg
     2281 gccgcgccgc gagtaaagcc cgactgactt ttgcaacaaa ccctggccat ggacgtgtaa
     2341 gcgttcccat gacctcattt gcgataactt caacgagccg tgtatccttt ttcgccgtga
     2401 atagtgattt aaatctggcg tccaaaccat tcagtaatcg cctgctaccg tgggcggtga
     2461 cggctatcat tctgtttatc tcggctatcg ggctggtggt cgtagtacgg ctgaccacag
     2521 tcgccaacag ccaggcgcaa gccctgcagt tgg
//
LOCUS       DASWTX010000414         1895 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_134729, whole genome shotgun sequence.
ACCESSION   DASWTX010000414 DASWTX010000000
VERSION     DASWTX010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1895
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134729"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..866)
                     /locus_tag="VGD38_06365"
     CDS             complement(<1..866)
                     /locus_tag="VGD38_06365"
                     /inference="COORDINATES: protein motif:HMM:NF012789.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEY0727677.1"
                     /translation="MDSELLSQLNEQQREAVLATEGPLLILAGAGSGKTRVIAHRIAY
                     LISDKNVSYWNILAVTFTNKAAEEMRLRVQRLLRERERSSLPMVSTFHSLCVRILRQD
                     IEKLKDKYTRTFTIYDQDDSLRLIKQSIKELGYDEKYLGTRATQSAISSAKNRGEDTE
                     AFAARAEYADERRAAMARVYKMYEDRLHANNALDFDDLLIKTVRLLRDVSEVREKYNN
                     KFRYILVDEYQDTNSLQFALIKFLTQKQQNICVVGDEDQSIYKWRGADISNILNFEKQ
                     FANTKTIRLEQN"
     gene            969..>1895
                     /locus_tag="VGD38_06370"
     CDS             969..>1895
                     /locus_tag="VGD38_06370"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEY0727678.1"
                     /translation="MNDQLWQAVVARDARFDGQFVFAVSSTKVYCRPSCPSRRPRRER
                     VSFFAKAEAAEEAGYRACLRCKPQSGDVADPQLALVQRVCQLLDASGEGDAVKLAELA
                     AQVGVSAFHLQRTFKRVMGISPRQFVAARRFGNFKQLVREGESVTNALYDSGFNSSSR
                     VYEQAAEELGMTPATYGRGGRGVKIDYTIAASPMGRLLVAVTHRGVCAVRMGDADATL
                     EKDLRTEFPEATIERAEKNLRETVRKILSHLSNSEPHLDLPLDIRATAFQRQVWEKLR
                     AIPYGQTVSYADVAKSLGKPGAVRAVGRACATN"
BASE COUNT          380 a          501 c          565 g          449 t
ORIGIN      
        1 tagttctgtt ccagccggat agttttggtg ttggcgaact gcttttcgaa attaaggatg
       61 ttgctgatgt ccgcgccccg ccacttgtaa atcgactgat cttcatcacc aacgacgcag
      121 atgttctgct gtttctgagt caggaacttg atcagcgcaa attgcagcga gttggtgtcc
      181 tgatattcgt cgaccaggat gtaacggaat ttgttgttgt acttctctcg aacttccgaa
      241 acgtcgcgca gcagccgcac ggtcttgatc aacaggtcgt cgaaatcgag cgcgttgttc
      301 gcgtgcaggc gatcctcgta catcttgtaa acgcgcgcca tcgccgctcg gcgctcgtca
      361 gcgtactcag cgcgcgctgc aaacgcttcg gtgtcttcgc cgcggttctt tgccgaactg
      421 atcgctgact gtgttgcgcg cgtgccgaga tatttttcgt cgtaaccgag ttctttgatc
      481 gactgcttga tcaggcgtag tgaatcgtcc tgatcgtaga tggtgaaagt gcgcgtgtac
      541 ttgtctttga gcttttcgat gtcctggcgc aggatgcgaa cgcacaaact gtgaaacgtc
      601 gacaccatgg gcaagctcga acgttcgcgc tcgcgaagca gtcgctgcac gcgcaggcgc
      661 atctcttcgg cggctttgtt ggtgaacgtg accgcgagaa tgttccagta ggagacgttc
      721 ttgtcagaga tgagataagc gatgcgatgc gcgatgacgc gagtcttgcc tgagccggcg
      781 ccggcgagaa taaggagcgg accttcagtc gcgagtactg cttctcgttg ttgctcgttt
      841 agttgtgaca ggagttccga atccacgtgc gcgtgcattt aaccacaccg cccaaatcag
      901 acaaaatcca ctttgaccgc aagaaccgga tagcttcgtt tcaatctgta ttttatgatc
      961 ccttccgaat gaacgaccaa ctttggcaag ctgtagtagc aagagacgcg cggttcgatg
     1021 ggcaatttgt gtttgctgtg agttcgacga aggtttactg ccgtccatcg tgcccgtcgc
     1081 gccggccgcg tcgcgaacgc gtttcgtttt tcgcgaaagc tgaggctgcg gaagaagcgg
     1141 gttatcgcgc gtgtctgcgt tgcaaaccgc aaagtggcga cgtcgcagat ccgcaactcg
     1201 cgctggtgca gcgtgtttgt cagttgctcg acgcatctgg cgaaggtgat gcggtgaagc
     1261 tcgcggagct tgcggcgcag gtcggtgtga gcgcgtttca tttgcaacgc acgttcaagc
     1321 gcgtgatggg catcagcccg cggcaattcg tggcggcgcg caggttcggt aatttcaaac
     1381 agctcgtgcg cgaaggagaa tcagtgacaa acgcacttta tgattcgggt tttaattcca
     1441 gcagccgcgt ctacgaacag gccgcggaag agttgggtat gacaccggca acgtacggcc
     1501 gcggcggacg cggcgtgaag atcgactaca cgatcgctgc ctcgccgatg ggtcggttgc
     1561 tggtggctgt gacccatcgt ggcgtgtgtg cggtgcgcat gggcgacgca gatgcgacgc
     1621 tcgaaaaaga tctgcgtacc gagtttcccg aagcgacgat cgaacgcgcc gaaaaaaatt
     1681 tacgcgaaac cgtgcgcaag attttgtctc acttgtctaa cagcgaaccc catctcgatc
     1741 tcccactcga cattcgcgcg actgcgtttc agcgtcaggt gtgggaaaag ctgcgtgcga
     1801 ttccttacgg ccaaacagtt tcctacgccg acgtggcgaa atctctcggc aaaccgggcg
     1861 cggtgcgcgc cgtcggacgc gcgtgtgcta cgaat
//
LOCUS       DASWTX010000415         1832 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_91579, whole genome shotgun sequence.
ACCESSION   DASWTX010000415 DASWTX010000000
VERSION     DASWTX010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1832
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91579"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1762
                     /gene="lon"
                     /locus_tag="VGD38_06375"
     CDS             <1..1762
                     /gene="lon"
                     /locus_tag="VGD38_06375"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: protein motif:HMM:TIGR00763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HEY0727679.1"
                     /translation="DDHFGLEKIKERILEYLAVRQLVKNPKGSILCFVGPPGVGKTSL
                     GKSIARATGRKFVRLSLGGVRDEAEIRGHRRTYIEWLINVPWKQTSKEIKDLVKAEEV
                     LNEDHFGLEKIKERILEYLAVRQLVKNPKGSILCFVGPPGVGKTSLGKSIARATGRKF
                     VRLSLGGVRDEAEIRGHRRTYIGALPGQIIQMMKKAATVNPVILLDEVDKLGADFRGD
                     PSAALLEVLDPEQNHTFQDHYLDVEYDLSKVFFIATANVLHTIPPALQDRLEILRLSG
                     YTEREKLEIAKRHLVPKQAEGNGLKPEQIDFTDEGILEVIRHYTREAGVRNLEREIGS
                     CCRKIARKFVSESLGDGATDTIDAARVREMLGPIKFRQQGIAANSEIGLATGLAWTEI
                     GGEVLQIEATLVKGRGGVTLTGKLGDVMQESAQAALTCIRARAERLGMSLDFIRKRDL
                     HIHIPEGAIPKDGPSAGITMATAMASALARVPVKKNVAMTGEITLRGRVLPIGGVKEK
                     LLAAHRFGIDTILLPKDNEKDLSEVPEEVRDALTINLVETIDEVLSLALEEACPTEAA
                     AGEGPPLWTTEQPAQGIQTR"
BASE COUNT          423 a          525 c          554 g          330 t
ORIGIN      
        1 cgatgatcat tttggactcg aaaagatcaa agagcggatc ctcgaatacc ttgcggtgcg
       61 ccagttagtg aagaatccga agggttcgat tctctgcttt gtcggcccgc cgggagttgg
      121 caaaaccagt ctcggcaagt cgatcgcccg cgcgacgggt cgcaagtttg tgcgtctctc
      181 gctgggcggc gttcgcgacg aagcggaaat ccggggacac cggcgcacct acatcgagtg
      241 gctgatcaat gtgccgtgga aacagacatc gaaagagatc aaagacctcg tgaaggccga
      301 ggaagtgctc aacgaagatc acttcggtct cgaaaagatc aaagagcgca ttctcgagta
      361 tctcgccgtg cgccagttgg tgaagaatcc gaagggttcg attctctgct ttgttggacc
      421 gccgggagtc ggcaagacga gtctcggtaa atcgatcgcg cgcgcgacag gccgcaagtt
      481 tgtgcggctc tcactcggcg gcgttcgtga cgaagccgag atccgcggac atcggcgcac
      541 gtacatcggc gcgctgcccg gccagatcat ccagatgatg aagaaggccg cgactgtgaa
      601 tcccgtgatc ctgctcgacg aagtcgacaa gctcggcgcg gattttcgtg gcgacccgag
      661 cgcggcgctg ctcgaagtgc tcgatccgga acagaaccac acgttccagg atcactatct
      721 cgacgtcgaa tacgatctct cgaaagtctt cttcatcgcc accgcgaacg tgctgcacac
      781 gattccgccg gcgttgcagg atcgtctcga gatactgcgt ctctcaggtt acaccgaacg
      841 cgagaagctc gagatcgcga agcgtcacct cgtgccgaaa caggccgaag gcaacgggct
      901 caaacccgag cagatcgatt tcactgacga aggaattctc gaagtcattc gtcactacac
      961 acgcgaagcc ggcgtgcgca atctcgaacg cgagattggt tcgtgctgcc gcaagatcgc
     1021 gcgcaagttc gtttcggaaa gtctcggcga cggcgcgacc gatacgatcg acgcggcacg
     1081 cgttcgcgag atgcttggtc caatcaagtt tcgccagcag ggcatcgcgg cgaacagcga
     1141 gatcggtctc gcgaccgggc ttgcatggac agagatcggc ggcgaagtgc tacagatcga
     1201 agcgacgctc gttaaaggac gcggcggcgt gacactcacc ggcaaactcg gcgacgtgat
     1261 gcaggagtcg gcgcaagccg cactcacttg cattcgcgcg cgcgccgagc ggctgggaat
     1321 gagtctcgac ttcattcgca aacgcgatct gcacattcac attccggaag gcgccattcc
     1381 caaggatgga ccatcagccg gtatcacgat ggccaccgca atggcctcgg cgctcgcgcg
     1441 cgttcccgtg aagaagaacg tcgcgatgac gggcgagatc accctgcgtg gacgcgtgtt
     1501 accgatcggc ggtgtgaagg aaaaactgct ggctgcgcat cgtttcggta tcgacacgat
     1561 cctcctgcct aaagacaacg agaaggacct cagcgaagta ccggaagagg ttcgcgacgc
     1621 gctcaccatc aatctcgtgg agacgatcga tgaagtgttg tcgctggccc tcgaagaggc
     1681 ttgcccgacg gaggcagccg ccggcgaagg tccgccgttg tggacaacag agcagccggc
     1741 gcaaggtatt caaaccaggt agttcataac ccgatccgtc ctcaacaaca ggagagacta
     1801 agtatgagca aatacaaaga tgccgatctg at
//
LOCUS       DASWTX010000416         3259 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_332132, whole genome shotgun sequence.
ACCESSION   DASWTX010000416 DASWTX010000000
VERSION     DASWTX010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3259)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3259)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3259
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332132"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(572..656)
                     /locus_tag="VGD38_06380"
     tRNA            complement(572..656)
                     /locus_tag="VGD38_06380"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(622..624),aa:Ser,seq:tga)
     gene            704..2365
                     /locus_tag="VGD38_06385"
     CDS             704..2365
                     /locus_tag="VGD38_06385"
                     /EC_number="6.3.5.1"
                     /inference="COORDINATES: protein motif:HMM:NF010588.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003952 - NAD+ synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HEY0727680.1"
                     /translation="MRVTIGQINTTNGDFEANTQSVIRGIEQAKQEHSDLIVFPETCI
                     QGYTSFDWFLDRDLQRCALEPLEKIIPATKGITAVVGTVRPSGLTTGRRLFNSAAIIR
                     NQELLGFSDKTLLPEYDVFDDPRYFQPATERRLFSLEDQKLGVAVCEDFWNDKTFWRE
                     RLYSHDPADELIELGAQVLVSINASPFNKGKMGERCKMVAHRAKAANLPIIFVNLVGG
                     NDGIVFDGASIVADANGKIILQAPPFKEFIGTVDLDTNVADQFCLPGDDIETIHDALV
                     LGIRDYARKNRFERVVIGLSGGMDSALVATLACEAIGAENVLSVMMPSPYSSRSSIDD
                     SIDLAQRLGMPVIEHPISNAYQTLREELHLPEPSAGGKSIAAENLQSRLRGNILMTIS
                     NAENRLLLSTGNKSELALGYCTLYGDTNGGLAVIGDVLKTEVYALANFINREREIIPR
                     SIIDKRPSAELAPGQFDDQSLPPYDQLDRVLKLYFEQKATPKEIVETGFEPQFVQDIL
                     NRVESPANEFKRRQLPPTLIISRNAIGLGRRRPVTHHYRREQLNC"
     gene            2606..>3259
                     /locus_tag="VGD38_06390"
     CDS             2606..>3259
                     /locus_tag="VGD38_06390"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0727681.1"
                     /translation="MKYTKRLTFILLAALLAIPLFVVHGAGGRIEGKITDPKGAGIPG
                     ASVTVTNQTSKQEFTAVTDAQGGYKVEGLPAGTYDVTVAAKGFKETRQADVKVEDNGV
                     KPVDVRLEIASLEAQVKVATGSQKGNLDPVYQSLRQLAKLDTDFAGSYATVNNLKLKR
                     DAATFTLKTGEIYFLAPVENRYTGAVFIGSGEMSMTPPTQAEKNSIRIFTEQDGIVEQ
                     "
BASE COUNT          833 a          985 c          820 g          621 t
ORIGIN      
        1 cggcattcgt cagcgccacc tgtagcaaga agccctttga tctcctcaag cgtaaggccc
       61 aactcctgag cttgcttgat aaatcggacg cgctcgattg accccgccgc aaagagacga
      121 aagttacccg aagaacgact ggcgcggggc aaaagcttta gccgctcgta gtagcgaacg
      181 gtgtcaacgc ttactcccgc gccacttgcg acctcgccga tgcgaaatgc cgtccgatcc
      241 atggagtaaa cctcagcgca agtatagacc ctagagcagg ctccagagtc aaggaatcag
      301 ggactaagcg ttgacttgaa ggaaaggaaa acgctaatgg ttgattggct tcgcgagaat
      361 tagctggtat cccgccgaag gtagggcgcg aagcaatttt taaaaagagc agttaaccat
      421 ttacgcaaca accagttcag aacgccgttg tcatttttcc gcgaaaattg gaaccaatta
      481 attgccggac gctattggaa ccattaagtt gccggagcgg caagttaatg cttcaagtga
      541 cacaaacgtg atcagagcgg atgaaatagg ttggcggagg ggacaggact cgaacctgca
      601 tagcctttcg gccggcggtt ttcaagaccg ctgcactacc attatgcgac ccctccgcag
      661 ttggggttag aatatagcgt aacctgaatc ggtttgctaa cacatgcgcg tcactatcgg
      721 tcaaatcaat accaccaacg gcgacttcga agctaacacc cagagcgtta tccgcggtat
      781 cgaacaggcc aaacaagagc actcggacct gattgtcttt cccgagacct gtatccaggg
      841 ctacacgtcc ttcgactggt tcctcgatcg cgatctccaa cgctgcgccc tcgagccgct
      901 cgaaaaaatt attccggcta ccaaaggcat caccgcagtt gtcggcaccg tcagaccatc
      961 cggactaaca accggcagac gtcttttcaa ctccgccgcg atcatccgca accaggaact
     1021 gctcggcttc tcggataaaa ctctactgcc ggaatacgac gtattcgacg atccgcgtta
     1081 cttccaacca gcaacagagc gacgcctctt ttcactcgaa gatcaaaaac tcggcgtcgc
     1141 cgtgtgcgaa gacttctgga acgacaaaac cttctggcgc gagcgtctct actcccacga
     1201 tcccgctgac gaactgatcg aactcggcgc gcaagtgctc gtctccatca acgcatcacc
     1261 attcaacaaa ggcaagatgg gcgaacgctg caagatggtc gcgcatcgcg ccaaagccgc
     1321 caacctgcca atcatcttcg tcaacctcgt cggcggaaac gacggcatcg tcttcgacgg
     1381 cgcaagcatc gtcgcagacg caaacggcaa gatcatcctg caagcgccgc cgttcaaaga
     1441 gttcatcggc acagtggatc tcgacacaaa cgtggccgat cagttctgcc tgcccggcga
     1501 cgacatcgaa acgatccacg acgcactcgt actcggcatc cgtgactacg cacgcaaaaa
     1561 tagattcgag cgcgtcgtga tcggattatc cggcggcatg gactccgccc tcgtcgccac
     1621 actcgcgtgc gaagccatcg gtgccgaaaa cgttctcagc gtgatgatgc cgtcgcctta
     1681 ttcgtcacgc tcgagcatcg acgactcgat cgatctggcc caacgtctcg gcatgcccgt
     1741 catcgagcat ccgatctcaa acgcttacca aaccttgcgc gaagagttgc acttgcccga
     1801 gccgtcagcc ggcggcaaat ccatcgccgc tgaaaacctg caatctcgtt tgcgcggcaa
     1861 catcctgatg acgatctcca acgccgaaaa tcgtctgctg ctctcaactg gaaacaagtc
     1921 agaactcgcg ctcggttatt gcacgctcta cggcgatacc aatggcggac tcgccgtgat
     1981 cggcgacgtg ttgaaaaccg aagtctacgc gctcgcgaat ttcatcaacc gcgaacgcga
     2041 gatcattccg cgatcgatca tcgacaagcg cccgtcagca gagttggcac cgggccagtt
     2101 tgacgatcaa tcgttgccgc cgtacgacca gctcgatcgc gtgctcaagc tgtacttcga
     2161 acagaaggcc acgccgaaag agatcgtgga aacgggattc gaaccgcagt ttgtgcagga
     2221 catactgaat cgcgtcgagt cgcccgcgaa cgagttcaaa cgccggcaac tgccgccgac
     2281 gctgatcatc tcgcgcaacg cgatcggtct cggtcgccgc aggcccgtga cgcatcacta
     2341 tcgccgcgaa caactaaact gctgagttta gcggtccaag ctttagcttg tccggcaaag
     2401 cagcagccta aaggctgaac tcaaaacgtg ggtccagagt tcgagcctag ctggtccgaa
     2461 aaaacagcag cctaaaaggc tgaactcaaa acgaagcttg actgcgcggc ttcaaacacg
     2521 aataatctgc cgtcaaccca ctatcgtgcg tggcccaagc gcccgattac gcctacattt
     2581 ctcaatcagt ttgcgaggtt aaggaatgaa atacactaaa agacttacgt ttatcctgtt
     2641 ggccgccctc cttgcgattc ccctattcgt cgtgcacgga gccggcgggc gcatcgaagg
     2701 aaaaatcacc gaccccaaag gcgccggcat cccgggcgct tcggtgaccg tcaccaatca
     2761 aacctccaaa caggagttca ccgcggtaac ggacgcacaa ggcggctaca aagtcgaagg
     2821 tctaccggcc ggaacatacg acgtgactgt cgctgccaaa ggcttcaaag agacacgcca
     2881 agcggacgtc aaagtcgaag acaatggcgt caaaccggtt gacgtacgtc tcgaaattgc
     2941 ctcgctcgaa gcgcaggtta aagtcgcaac cggatcgcag aaaggcaatc tcgatcccgt
     3001 ttatcaaagt ctccgccaac tcgctaaact cgataccgat ttcgccggct catacgctac
     3061 cgtcaacaat ctcaagttga agcgcgacgc tgcgacgttc acgctgaaga cgggcgagat
     3121 ttacttcctc gctccggtcg aaaacagata caccggcgct gtgtttatcg gctcgggcga
     3181 gatgtcgatg acgccgccga cgcaagccga gaaaaacagt atcaggatct ttaccgaaca
     3241 ggacggcatc gtcgaacaa
//
LOCUS       DASWTX010000417         2604 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_28773, whole genome shotgun sequence.
ACCESSION   DASWTX010000417 DASWTX010000000
VERSION     DASWTX010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2604
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28773"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..185
                     /locus_tag="VGD38_06395"
     CDS             <1..185
                     /locus_tag="VGD38_06395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727682.1"
                     /translation="ARDALRALRRAAKRALELGLQTGTPVWVMKNGKLVDLTEEQPAS
                     KKARTKRSEPKKRISG"
     gene            complement(698..2257)
                     /locus_tag="VGD38_06400"
     CDS             complement(698..2257)
                     /locus_tag="VGD38_06400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727683.1"
                     /translation="MANKTLFKSLVGKLIPATDAINEERAPAYALPPKHQLAQYAATG
                     CLNRTYYASAGEQLAQTIALCAELDAEFIAKTAVFCRERGYMKDMPALLCAVLSVKDR
                     ELLARVFPRVIDNAKMLRNFVQIVRSGAVGRKSLGTAPKRLVREWLDARDPATLFKAN
                     VGQAPSLADIVKMVHPKPKDAAREALFGYFIGREYAADALPEAARNFEAYKKGESREV
                     PDVPFQMLTALELGTPEWTAIARRAPWQMTRMNLNTFARHGVFGQPGMTELIANRLRD
                     PKAIARARVFPYQLMVAYTMAQGNADVPQEVCDALQDAMEIAIANVPAIEGRVYVCPD
                     VSGSMSSPMTGFRPGATTKVRCIDVAALVAAAVLRKNPNAEVLPFEHKMVKVRLNPRD
                     SVMTNAARLASVGGGGTSCSAPLALLNRRKAKGDLVIFISDNESWVDAGSGRGTETMK
                     EWNAFKQRNPAARLVCIDVQPYRTVQASEREDILNVGGFSDQVFDVIAEFANGELNAD
                     HWIGVIESVAL"
     gene            complement(2264..>2604)
                     /locus_tag="VGD38_06405"
     CDS             complement(2264..>2604)
                     /locus_tag="VGD38_06405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727684.1"
                     /translation="LFCAAFDLLYDPLLPDDEYYPLRELMDWFNEHLKAPFGYRLRSP
                     SRAPRAICWFKPTAREHLARAWEMAWILERNDVFVRTIKAERTGYVLYEDDAQVLAEP
                     FADIRRLCRR"
BASE COUNT          573 a          816 c          720 g          495 t
ORIGIN      
        1 aagcacgtga cgccttgcgg gcgctgcgtc gcgcggcgaa gcgcgctttg gaattgggac
       61 ttcagactgg aacgccggtt tgggtgatga agaatggcaa gctcgtcgac ctcaccgaag
      121 aacaaccggc gagcaaaaaa gcgcgcacga aacgatcgga gcccaagaaa aggatctcgg
      181 ggtgacgaga ttggaaagac ctcgagcacg gtggaacccg ctgctggcga gatccaccgc
      241 tggagttacc cgactccacg aaggctcact ggtttttagc cagaggcggt gtagtcctcc
      301 cggcattcac cccgagtcca aatgcaacaa aatcaagatg gcgacaaagt cggtgagagt
      361 cctcacccac cagtttgggt aagacaggat tcgaacctgc ggtgaccatg tactccacac
      421 ccgcattcgc catcgcttca aaaggaccga caagtctcgc ggagacgacg gcctccgaag
      481 aggcgcacat tacagtgtga tgtagtcccc gacagcattc ggccaaactt accgaagcat
      541 tcacaacagt tttcaaaggc tgacaaggtt cgcagagaca acggtctccg gagagacaca
      601 cgttaaaggt gtgatgtagt ccccacagca ttcagccccg aatcctgctt tacagtttcg
      661 agtttcgaaa ccaacggctc gaaacccgga acatcaatca caacgcaacc gactcgatca
      721 cgccgatcca gtggtctgcg ttgagttcac cattcgcgaa ttccgcgatc acgtcaaaca
      781 cctgatccga gaatccgccg acgttgagaa tgtcctcacg ttcgctcgcc tgcaccgtgc
      841 gatacggctg cacgtcgata caaaccagac gagccgcagg attgcgctgc ttgaacgcat
      901 tccactcttt catcgtctcc gttccacgac cggaacctgc atcaacccac gactcgttat
      961 ccgaaataaa gatcacgaga tcgccctttg ccttgcggcg gttgagcaga gccagtggtg
     1021 cactacagct cgttccacca ccaccaaccg atgccagtcg tgcggcgttg gtcatcacgc
     1081 tgtcgcgcgg gttgagcctc accttaacca tcttgtgctc aaacggcagc acttcagcgt
     1141 tcgggttctt gcgcaacacc gccgccgcaa ccagcgccgc gacgtcgatg caacgcacct
     1201 ttgtcgttgc gcccgggcgg aaacccgtca tgggcgacga catcgaaccc gacacatcgg
     1261 gacaaacgta aacgcgtccc tcgatcgccg gaacattcgc aatcgcgatc tccatcgcat
     1321 cctgaagcgc gtcgcaaact tcctgcggaa cgtcagcgtt gccctgggcc atcgtgtacg
     1381 cgaccattag ctggtacgga aacacgcggg ccctggcgat cgccttcgga tcgcgcagac
     1441 ggttcgcgat cagctcagtc atgcccggct gaccaaacac gccgtgacgt gcaaacgtgt
     1501 tcaggttcat acgcgtcatc tgccacggcg cacggcgcgc gatcgcggtc cactccggcg
     1561 taccaagctc cagcgctgtc agcatctgga acggcacgtc gggaacttca cgcgactccc
     1621 ccttcttgta agcctcgaag ttgcgcgcag cttccggcag cgcatcagcc gcgtattcac
     1681 ggccgatgaa gtagccaaac agtgcttcac gcgcagcgtc cttcggcttc gggtggacca
     1741 tcttcacgat gtcggcgagc gacggcgcct ggcccacatt ggccttgaag agcgttgccg
     1801 gatcgcgtgc gtcgagccac tcacgcacga gacgctttgg cgcggtaccg agcgacttgc
     1861 ggcccacggc acccgaacga acgatctgca cgaagttgcg cagcatcttc gcgttgtcga
     1921 tcacacgcgg gaacacgcgc gcgagcagct cgcggtcctt caccgaaagc actgcgcaaa
     1981 gcagcgccgg catgtccttc atgtaaccgc gttcacggca gaacacagcg gtcttcgcga
     2041 tgaactccgc gtcgagctcg gcgcacagtg cgatcgtctg tgccagttgc tcgccggcag
     2101 acgcgtagta cgtgcggttc aaacaaccgg ttgctgcgta ctgcgcgagc tgatgctttg
     2161 gcggaagagc gtacgccgga gcgcgctctt cgttgatcgc gtcagttgcc gggatgagct
     2221 tgccgaccag cgacttgaat agtgtcttgt ttgccattgc tcgttacctc ctgcaaagcc
     2281 gtctgatgtc tgcgaacggc tctgccaaaa cctgtgcgtc gtcttcgtaa agaacgtaac
     2341 ccgttcgttc cgccttgatc gttcgaacga agacgtcgtt tcgttcgaga atccatgcca
     2401 tttcccaggc gcgcgccaag tgttcgcgcg cggttggttt gaaccagcag atcgcgcgcg
     2461 gcgcacgcga tggcgatctc aatcgatagc caaatggagc tttcaagtgc tcgttgaacc
     2521 agtccatcag ctccctgagc gggtaatact cgtcgtcagg aagaagcggg tcgtacaaca
     2581 gatcgaaagc agcacagaag agcc
//
LOCUS       DASWTX010000418         1870 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_91614, whole genome shotgun sequence.
ACCESSION   DASWTX010000418 DASWTX010000000
VERSION     DASWTX010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1870)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1870
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91614"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..665)
                     /locus_tag="VGD38_06410"
     CDS             complement(<1..665)
                     /locus_tag="VGD38_06410"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY0727685.1"
                     /translation="MTPSFPERFNMADYFLYHNLEEGRENKVCLYFEDQKWTYGETAR
                     FSNRAGNALRELGVDIEDRVLLVLPDCPEFVWAWFGAARIGAVITMVNPLLPAADYEY
                     YLDYTRARVAVVHESVLENFYEAAKGARYLRGVLVVGQFEGIKTKNQIQWVNFSEALA
                     TDDECTPADTRRDDIAIWLFTSGSTGHPKGAVHLQHDLPYNTEVFAKATMGVNADDLT
                     VSVP"
     gene            complement(670..990)
                     /locus_tag="VGD38_06415"
     CDS             complement(670..990)
                     /locus_tag="VGD38_06415"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HEY0727686.1"
                     /translation="MKDRRSAPRVRVNLPARWEGVLSRETATVTDISRNGCFVLTGGK
                     VEVKELVWLEIQLTDTQAVNFWAEVVDAASEIGFALKFNSSTPEDEGMLASFLDKFFQ
                     TNAH"
     gene            complement(996..>1870)
                     /locus_tag="VGD38_06420"
     CDS             complement(996..>1870)
                     /locus_tag="VGD38_06420"
                     /inference="COORDINATES: protein motif:HMM:NF015272.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004833 - tryptophan 2,3-dioxygenase
                     activity [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0019441 - tryptophan catabolic process to
                     kynurenine [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tryptophan 2,3-dioxygenase family protein"
                     /protein_id="HEY0727687.1"
                     /translation="GDEEDRGVRRVSRTRSGGGSVLMSNTYGDKPPLSYNKYLRVQDL
                     INLQDLLSDPAHHDELLFITVHQAYELWFKQVLHELDASIQFLEEDRLPAATRAITRI
                     VDIEKLLVQQIHILESMTPISFLAFRDQLNPASGFQSMQFREIEFSSGLKDERIVREF
                     KADQFAFERLQSRMDRPSLADAFYRALERRGFDVSDRARAILEILTHFESRYEEFQLT
                     EALLEHDEYFSLWRSHHIKMVERMVGAKRGTGGSEGIGYLKTTLDKKFFPEIWEARTR
                     LDINHGSSGCPFAH"
BASE COUNT          409 a          589 c          466 g          406 t
ORIGIN      
        1 ggaaccgaca ccgtcaaatc atccgcgttc acacccatcg tggctttcgc aaacacctca
       61 gtgttgtaag gcaaatcatg ttgcaaatgc accgcaccct ttggatgccc cgtcgaaccc
      121 gacgtgaaca gccagatcgc aatatcatcc cgacgagtgt ctgcgggtgt gcattcatcg
      181 tctgtagcga gtgcttcgct gaagttcacc cattggatct gatttttggt tttaatcccc
      241 tcaaactggc caaccaccag gacgccgcgc aaataccgcg cacccttcgc cgcttcataa
      301 aagttttcca acaccgactc atgcaccacc gccacacgcg cgcgcgtgta atccaggtag
      361 tattcataat ccgccgccgg caacagcgga ttcaccatcg tgatcaccgc gccgatacgc
      421 gccgcaccaa accacgccca aacaaactcc ggacaatcag gcagcactaa cagcacgcgg
      481 tcttcaatat ccacgcccag ttcgcgcaac gcattgcctg cacgattcga gaaccgcgcc
      541 gtctcaccgt aggtccactt ctgatcctcg aagtagagac agactttgtt ttcgcgtcct
      601 tcctccaggt tgtggtagag gaagtaatcg gccatgttga agcgttctgg aaatgagggc
      661 gtcatgattt caatgcgcgt ttgtttggaa gaacttatcg aggaagctcg cgagcatgcc
      721 ctcgtcttca ggcgtgcttg aattgaactt gagcgcaaag ccgatctcgg aagctgcgtc
      781 cacgacttca gcccagaaat taacggcctg tgtgtcggtg agctgaatct ccaaccacac
      841 caactccttc acctcgactt tgccgcccgt caacacaaag cacccattgc ggctaatatc
      901 agtcacggtc gccgtctcac gcgagagcac cccctcccat cgcgccggca aattcactct
      961 cacacgcggt gctgatcgtc tgtccttcat cggcttcagt gcgcgaacgg gcagccgctg
     1021 ctgccgtggt tgatgtcgag acgggtgcgc gcttcccaga tctcggggaa gaacttcttg
     1081 tcgagcgtcg tcttcaggta accgatgcct tccgagccgc cggtgccgcg cttcgccccc
     1141 accatgcgct cgaccatctt gatgtggtgc gaacgccaga gcgagaagta ttcgtcgtgc
     1201 tccagcaacg cttcggttag ttgaaactct tcataacgac tctcgaagtg cgtgaggatt
     1261 tcgagtatcg cccgcgcccg atcgctcacg tcaaacccgc ggcgttcgag tgcgcgataa
     1321 aacgcatccg ccagcgacgg ccggtccatc cgcgattgta aacgctcaaa cgcaaactgg
     1381 tctgctttaa attcacgcac aatccgctcg tccttcagcc ccgacgaaaa ctcgatctcg
     1441 cgaaactgca tcgactgaaa cccgctcgcc gggttgagct gatcgcgaaa cgcgagaaag
     1501 ctgatcggcg tcatgctttc gagaatgtga atctgttgga ccagcaactt ctcgatgtcc
     1561 acgatccgcg taatcgcgcg cgtcgcggcg ggcaggcgat cttcttcgag aaactgaatc
     1621 gacgcgtcga gctcgtgcag cacctgtttg aaccacaact cgtacgcctg gtgcaccgtg
     1681 atgaacaaga gctcgtcgtg atgcgccgga tccgaaagca ggtcctgcaa attgatcagg
     1741 tcctgcacgc gaagatattt gttgtatgaa agtggcggtt tgtcgccgta cgtattggac
     1801 atcaaaacgc tgcccccgcc gcttcgtgtt cgcgatacgc gtctgactcc gcgatcttct
     1861 tcatctccgc
//
LOCUS       DASWTX010000419         3102 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_375562, whole genome shotgun sequence.
ACCESSION   DASWTX010000419 DASWTX010000000
VERSION     DASWTX010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3102
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_375562"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2520
                     /locus_tag="VGD38_06425"
     CDS             <1..2520
                     /locus_tag="VGD38_06425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="lamin tail domain-containing protein"
                     /protein_id="HEY0727688.1"
                     /translation="GGGPSGTFTIPPDTTGAVGLDKVVTILNNNLVIQDKTTGAQLSL
                     VGLTAFWSSTGATGVFDPRIVYDPYNNRWIVAAVSNAQTANSSVIVGVSNSPDPQGTF
                     TLFRFIVGCAPGSPGCNAAGGWADFPMLGFNKNWVAIGWNQFTINTLAFTDGRMLVLD
                     YPALRAGTTTATIFTGASAAIGGFCMHPATTFSTTEETLYIPTHIGSAGATYRLHRLT
                     GTPASPTFNVDGANRTRPGGGWTQPGGDTLPQQCVPGVGAPTQTCPVTIRQIESSDAF
                     IRSNVVFRNGKIYYPQTIALPAGGITNNSRFAAQWTVLNNDGTFSDGGRVEDATATRI
                     NGGKHYAYPSLAVNKNNDVLLGFTEFESDDYADAGYTFRLGSDAAGTMQDPVIYKEGE
                     DYYQKTFSGTRNRWGDYSHSLIDPVNDRDLWTVQEYPMLRVGTTGQGSNDSRWGTWWA
                     KLAAPAGAGDLLISEFRLRGPSGANDEFVEIYNPGSADFTVTTADGSAGYSLVASDGV
                     ARFTIPNGTVIPAKGHYLGTNSVAYSLSGNATGDVTYTTDIPDNAGIALFSTSTPPNF
                     VLANRIDAAGSTSEANTLYKEGAGYSALTPFSIDYSFYRSFCPNNTGIFGTALGCAAG
                     SGGLPKDTNDNAADFVFVDTNGTSAGAGQRLGGPGPENLASPIDRNATVTVLFVDATQ
                     GAAVPPNRVRDLTSDPANNSTFGTLDLRRRILNNTGVAVTRLRFRVIDINTFPAPSGF
                     ADLRTRTSSLVVVSGVTDAGTCLASNGVATTPCTINIQGTTLEQPPSQPNGGAFNSTY
                     SAGTITLGTPLAAGASINVRFLLGIQQTGSFRFFLNVEALP"
     gene            complement(2527..3027)
                     /locus_tag="VGD38_06430"
     CDS             complement(2527..3027)
                     /locus_tag="VGD38_06430"
                     /inference="COORDINATES: protein motif:HMM:NF033537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lasso peptide biosynthesis B2 protein"
                     /protein_id="HEY0727689.1"
                     /translation="MFHFAGRAVRKVVSRPGEAWLLCRMAWWVTVLSVAARWFSLPRA
                     LAIVAGNERAVGANSAAVIEGPAVQERLARAIDLLLSADVLHFKPICWKRAAVLHRYL
                     SRNGISTRIVFGVRNEPGGKVDGHAWLEAAGEPILESTPPEYVVTYRFPSKETFDPQL
                     ATFSVE"
BASE COUNT          615 a          962 c          904 g          621 t
ORIGIN      
        1 ggcggtggac catcgggaac gttcacgatt ccaccggaca cgaccggcgc ggtcgggctc
       61 gataaagtcg ttacgatcct gaacaacaac cttgtcatcc aggacaaaac cacgggtgcg
      121 cagttgagtc ttgtgggcct gacggctttt tggagttcca ccggcgcgac cggcgtgttc
      181 gatccgcgca tcgtctacga tccttacaac aaccgctgga tcgtcgcggc ggtttcgaat
      241 gcgcaaaccg caaactcgtc ggtgatcgtc ggcgtttcca acagtcctga cccgcaaggc
      301 acgtttacgt tgtttcgctt catcgtcggc tgtgcgccgg gctcacccgg atgcaacgcc
      361 gccggcggat gggccgactt cccgatgctt gggttcaaca agaattgggt agctatcggt
      421 tggaaccagt tcaccatcaa cacgctcgcg tttaccgacg gacgcatgct ggtgcttgat
      481 tacccggcac tgcgcgcggg cacaaccacg gccacgattt tcaccggcgc ttcagcagcc
      541 atcggcggct tctgcatgca ccccgccacg acattttcga cgaccgagga gacgctttac
      601 attccgacgc acatcggcag cgccggcgcg acgtatcgtt tgcaccgcct aaccggcacg
      661 cctgcgtcgc caacgttcaa cgtcgacggc gcaaatcgaa ctcgtccggg tggcggctgg
      721 actcaaccgg gcggtgacac actgcctcag caatgcgtgc ccggtgtcgg cgcgccgacg
      781 caaacgtgcc cggtgacgat tcgtcagatc gaatcttccg acgctttcat tcgttcgaac
      841 gtcgtctttc gcaacggcaa gatctactac ccgcaaacga tcgcgttgcc cgcgggcggt
      901 atcacaaaca actcgcgctt cgccgcgcaa tggaccgtgt tgaataacga cggcacgttc
      961 tccgacggcg gccgcgtgga agatgcgacc gcgactcgca tcaacggcgg caagcactac
     1021 gcgtatccga gtctcgccgt taacaagaac aacgacgtgc tgctcggctt cacggaattc
     1081 gagtcggacg actacgcaga tgccggttac acgtttcgtc tcggcagcga tgccgccggc
     1141 acgatgcagg atccggtgat ctacaaggaa ggcgaagact actaccagaa aactttcagc
     1201 ggcacgcgca atcgttgggg tgattacagt cactcgctga ttgatccagt gaacgatcgc
     1261 gatctgtgga ccgtgcagga atacccgatg ctgcgtgtcg gcacgaccgg acaaggcagc
     1321 aacgattcgc gttggggaac gtggtgggcc aaattagcgg cgccggctgg agctggcgat
     1381 ctgctgatca gtgagtttcg cttgcgtggt ccgagtggcg cgaacgacga gtttgtcgag
     1441 atttacaatc ctggcagcgc ggatttcacc gtcacgaccg cggatggatc ggctggttat
     1501 tcgctcgtcg cttccgatgg cgtggcgcgt ttcaccattc cgaatggaac cgtgattccg
     1561 gcgaaaggtc attacctcgg cacgaacagt gtggcctatt cgctttccgg gaatgcaacg
     1621 ggcgacgtca cctacacgac cgacattccc gacaacgccg gtatcgcgtt gttctcgact
     1681 tcaacgcccc cgaacttcgt gttggctaat cgaatcgacg cggctggatc gacttcggaa
     1741 gcaaacacgc tttacaaaga aggcgccgga tactcggcgc tgacgccgtt ctcgatcgac
     1801 tactcgtttt atcgcagttt ctgtccgaac aacacgggca tcttcggaac tgctctcggc
     1861 tgcgcggccg gtagcggtgg tttgccgaag gacacgaacg acaacgccgc ggattttgtg
     1921 tttgtcgata cgaacggaac atcggcgggc gcgggccagc gtttgggtgg accgggaccg
     1981 gagaacctcg catcgccgat cgatcgcaac gccacggtca ccgttctgtt tgtcgacgcg
     2041 acgcagggcg cggcggtacc gccaaaccgc gtgcgcgatt taacttccga tccggcaaac
     2101 aactcgacgt tcggaacgct ggaccttcgc cgccgcatcc tcaacaacac gggcgtggcc
     2161 gtgacgaggc tgcggttcag ggtgatcgac atcaacacgt tccccgcgcc gtcgggcttt
     2221 gctgacttgc gcacgcgcac gtcgtcgcta gttgtggttt ccggtgtcac tgatgcgggt
     2281 acgtgtctgg cgtctaatgg agttgcgact acgccttgca cgatcaacat ccaggggacg
     2341 acgttggaac agccgccgtc gcaaccgaac ggtggcgcct tcaacagcac ctactcggca
     2401 ggaacgatca cgctcggcac gccgctcgcg gccggcgcct ccatcaacgt tcgtttcttg
     2461 ttggggattc agcagacggg cagcttccgc ttcttcctga acgtggaagc gctgccgtaa
     2521 cgattgttac tcgactgaaa aagtggcgag ttgaggatcg aaggtttctt ttgaagggaa
     2581 gcggtaggtg acgacatact cgggcggtgt gctttcgagt atcggttcgc ctgccgcttc
     2641 cagccatgcg tggccgtcca ctttcccgcc tggttcattc cgtacaccaa aaacgatccg
     2701 tgtgctgatg ccgttgcgtg agagataacg gtgcagcacc gcggcgcgtt tccagcagat
     2761 gggtttgaaa tgcaggacgt cggccgagag taacaggtcg atcgcacgcg ccagtcgttc
     2821 ctgaacagcc gggccttcaa taacagccgc actgttcgca ccaaccgctc tctcgttccc
     2881 agcgacgatc gcgagcgcac gcggcagcga aaaccatcgc gccgccaccg acagcaccgt
     2941 cacccaccac gccatccggc acaacaacca cgcctccccc ggccgcgaca caaccttccg
     3001 caccgcccgc ccggcgaagt ggaacattct ctggcttttt acagtaaacg cgttaagcac
     3061 ttcgttctga gttcaacctt taggttgtcc gttgacgggc aa
//
LOCUS       DASWTX010000420         5791 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_4768, whole genome shotgun sequence.
ACCESSION   DASWTX010000420 DASWTX010000000
VERSION     DASWTX010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5791
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4768"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..920)
                     /locus_tag="VGD38_06435"
     CDS             complement(<1..920)
                     /locus_tag="VGD38_06435"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY0727690.1"
                     /translation="MSNRYDAVVIGGGHNGLVNAAYLARAGKKVLVLERRHVLGGAAV
                     TEEVFPGFKFSVCSYVVSLLRPEIIRELDLPRHGLEILPLDGTFTPMPNGDYLWRVND
                     HARTRREIARHSKLDAEAYDEYGKAMIEMAHFVKPIMSMTPPDPTTLDPWGWKNLAFL
                     GRRFQRLSDDDKYNQVQLMTMSAVDFLDQWFETDVLKATMSASGIIGTFLGVRSPGTA
                     YVLLHHYMGEIDGAFRSWGFARGGTGAISNAIGDAAREAGVEIRTEAPIASILLKNGR
                     ALGVVLENGDEIRSQVVSSSVDPRLTFMRM"
     gene            1015..2217
                     /locus_tag="VGD38_06440"
     CDS             1015..2217
                     /locus_tag="VGD38_06440"
                     /inference="COORDINATES: protein motif:HMM:NF013720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyltransferase family protein"
                     /protein_id="HEY0727691.1"
                     /translation="MPIGTAFHERTFQLCESLSYREWSGYYAVSSYEPHHEHEYNAIR
                     NAAALIDISPLFKYRLTGKDATRLVDRVITRDMRKVTVGQVVYTPWCDERGKVIDDGT
                     VSRLEENVYRWTAADPSLRWFTQNAAGMDVSIEDISEAVSALALQGPTSGRLLVSLVK
                     DADIANLKYFRVTRGTIAGVPVEISRTGYTGDLGYEIWIASDQALKVWDALMDHGKAF
                     DIHAAGMLALDVARVEAGLLLIDVDFNSSKKALVEEQRYSPYEMGLGRLVNLDKNRFV
                     GQAALIAEQKRGHAREIVGLEIDWPQVESLYEAVGLPPSVSPMASRVAVPVYKEGMQV
                     GKATTSTWSPTLKKFIALATVKREYTRPGTRLQFEITVEAVRHQVRATVVKTPFFNPK
                     RKTATPVA"
     gene            2222..3325
                     /locus_tag="VGD38_06445"
     CDS             2222..3325
                     /locus_tag="VGD38_06445"
                     /inference="COORDINATES: protein motif:HMM:NF013044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic ring-hydroxylating dioxygenase subunit
                     alpha"
                     /protein_id="HEY0727692.1"
                     /translation="MSIVDQYDPNAPLALATTIPASWYVNRELYELELQNVFASKWQL
                     AARLDQVGQPGQYVTTDIAGEPIVVVRGNDGVLRGFFNVCRHHAAAVMTDPEGKAPQL
                     RCPYHGWTYSLEGELKGTPDFTGVCDFDRARNGLVSVEIAEWENWVFVRLVEGDAVSL
                     RDFLTQELVDEIGRIELTNLHWFERRHYHFDCNWKVFVDNYLDGGYHVPYLHKGLDSV
                     LDYSNYMIENGTHHCLQWSPIVTEGAEAQTGAVRKGDRALYYWIYPNFMINWYDGVMD
                     TNLVIPRGVDQTEVIFDFYFPDVVSEEARARNTASVAVGQRIQDEDVAICKSVQRGLN
                     SRAYTAGRLSVRREAGEHLFHRLLHADLSHRSQ"
     gene            3370..4686
                     /locus_tag="VGD38_06450"
     CDS             3370..4686
                     /locus_tag="VGD38_06450"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEY0727693.1"
                     /translation="MLGVGFGLAVIVGNTIGAGIFRAPGQIAEQLPYPWIFLGVWLLG
                     GLYALLGAISLAELGTMIPRSGGQYVFARYALGEYAGFIVGWSDWISSCGSTAAVALV
                     VGTFSGALVPALSGKGPAVAATVAIVFAVLQWRGIVWGNTIQNFTSLLKALAFFVLIA
                     AAFVLGGGGALTGGAAVAGETGLNGSQISASSVITMAAIVTSLQAAIYTYDGWSGVIY
                     FSEEVQNPGRDIPRALLGGVLTITAIYLLVNLALLYVLPISGIAGKEFAAGEAANAIF
                     GQHGDTVFRCITIVSMLSAVNALHLMATRVIFAMSRDGLFTQRAAVVNVGGTPTVSLF
                     LSATVAVLFILFGQTFERVIIICAFFFVANYILSFISLFVLRFREPDTPRPYRAWGYP
                     VTPGLALIGSLLFLAGAVYADRTNSLYALLLLAASYPVFRLVKLLK"
     gene            complement(4675..5586)
                     /gene="thrB"
                     /locus_tag="VGD38_06455"
     CDS             complement(4675..5586)
                     /gene="thrB"
                     /locus_tag="VGD38_06455"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: protein motif:HMM:TIGR00191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEY0727694.1"
                     /translation="MAEIRVPASTSNLGPGFDCFGLALKMYLTVRAKAVPEAAEPCRV
                     TTTGAKENEALPRNASNLIYRAMAFAARREGVSLPPVELEVHNEIPLASGLGSSAAAI
                     VAGLKLLSLLTQHEIADQSLLNYATEFEGHPDNVAASLCGGFTISCLRNDRTVVTAKF
                     DWPSQVRVVVVSPHSQLPTHVARAALPRMVSRANAVHNLQRSALFTAALAHQKHELFW
                     EAMCDQLHQPQRESLVPGLAEALALPRMDGLLGVALSGAGPSILALVESHENEIGARL
                     AKCFSSHKIESTIRILDVDNDGCRLLQ"
BASE COUNT         1148 a         1625 c         1771 g         1247 t
ORIGIN      
        1 atcatcctca tgaacgtcaa acgcggatcg acactcgatg acacaacctg agaacgaatc
       61 tcgtcaccgt tttccaacac cactccaaga gcacgcccat tcttcaacag aatcgaagca
      121 atcggagctt cagtccggat ctcgacaccc gcttcacgcg ccgcatcgcc aatcgcattc
      181 gagatcgcgc cggtgccgcc gcgcgcaaat ccccacgaac gaaaagcgcc gtcgatctcg
      241 cccatgtagt ggtgcagcaa aacgtaagca gtgcccggcg aacgcacgcc gagaaaagtg
      301 ccgatgatgc ccgacgcaga catcgtcgct ttgagcacgt cggtctcgaa ccactgatcg
      361 agaaagtcga cggcgctcat cgtcatcaac tgcacctggt tgtacttgtc gtcgtcggaa
      421 agtctttgaa aacgccggcc gagaaacgcg aggttcttcc agccccaagg atcgagtgtc
      481 gtcgggtccg gcggcgtcat gctcatgatc ggtttgacga agtgggccat ctcgatcatt
      541 gctttgccgt actcgtcgta agcttcggcg tcgagctttg aatgacgcgc gatctcgcgg
      601 cgcgtacgcg cgtgatcgtt gacgcgccag agatagtcgc cgttgggcat cggcgtgaac
      661 gtgccgtcga gcggaaggat ttcgagaccg tgccgcggca ggtcgagttc gcgaataatc
      721 tcgggtctga gcagtgaaac cacgtaagaa caaacagaga acttgaaccc gggaaagacc
      781 tcttcggtga cggcggcgcc gccgagcaca tggcggcgtt cgagcacgag gaccttcttc
      841 cccgcgcgcg ccagataagc cgcattaacc agaccgttat gcccgccgcc aatcacgacg
      901 gcgtcgtatc gattgctcat tgtcgttttt cttttaggag tgccttgctg cgaacgcgtt
      961 agcatactta taatcgctcg ccctgacaaa cccgggacta acaacacaac acgcatgccc
     1021 attggaaccg cttttcacga acgaacattc caactctgcg aaagtctcag ctatcgcgag
     1081 tggtccggtt attacgccgt cagctcttat gagccgcatc acgagcacga gtacaacgcg
     1141 atccgcaacg cggcggcgtt gatcgatatt tcgccgctgt ttaaataccg gctgaccggc
     1201 aaggacgcga cgcggctcgt cgatcgcgtg atcacgcgcg acatgcgcaa ggtgacggtg
     1261 ggccaggtgg tctacacgcc gtggtgcgac gagcggggta aggtgattga cgacggcacg
     1321 gtgtcgcggc tcgaagagaa cgtgtatcgc tggaccgcgg ccgatccgag cctgcgctgg
     1381 tttacgcaga atgccgcggg catggacgtc tcgatagaag atatttctga ggctgtttcc
     1441 gctttagcgt tgcagggacc gacgtcgggc cgcttgctcg tgagtcttgt taaggatgcg
     1501 gacatcgcga acctgaaata cttccgcgtc actcgcggca cgatcgcggg tgtgccggtg
     1561 gagatttcgc gcacgggata cacgggcgac ctcggttacg agatctggat tgcgtccgat
     1621 caggcgctga aggtttggga cgcgctgatg gaccacggta aggctttcga tattcacgcc
     1681 gcgggcatgt tggcgcttga tgtggcgcgt gttgaagcgg gtttgttgtt gatcgacgtc
     1741 gatttcaaca gcagtaagaa agcgctggtt gaggagcagc gttattcgcc gtacgagatg
     1801 gggcttgggc gccttgttaa tctcgacaag aaccggtttg tgggccaggc ggcgttgatt
     1861 gcggaacaga agcgcggcca tgcgcgcgag atcgttgggc tggagatcga ctggccgcag
     1921 gtcgagagtc tttacgaagc cgtcggcttg ccgccgtcgg tttcgccgat ggcttcgcgt
     1981 gttgcggtgc cggtttacaa ggaaggcatg caggtcggca aagcgacgac gagcacatgg
     2041 tcgccgacct tgaagaagtt catcgccctc gccacagtga agcgtgagta cacgcgtccg
     2101 ggcacgcggc tgcaattcga gatcacagtt gaggccgtgc gccaccaggt ccgcgcgacc
     2161 gtcgtgaaga cgccgttctt caatccgaaa cgtaagacag cgacaccggt tgcttaaatc
     2221 catgtctatc gtcgatcagt acgacccaaa tgctccatta gccctggcga cgacgatccc
     2281 tgcctcctgg tacgtaaata gagagctcta cgaactcgaa cttcaaaacg tctttgcaag
     2341 caagtggcaa ctcgcggcgc ggttggacca agtgggccag cccgggcagt acgtcacaac
     2401 tgacatcgcg ggcgagccga tcgttgttgt acgtggaaac gacggcgtgt tgcgcgggtt
     2461 cttcaacgtt tgccggcatc acgccgccgc agtgatgacc gaccccgaag gcaaagcgcc
     2521 gcaattgcgt tgcccttatc acggctggac ctactcgctt gaaggcgaac taaaaggcac
     2581 gccggatttc actggcgtgt gtgatttcga tcgcgcgcgc aacggtttgg tctccgtaga
     2641 gatcgccgaa tgggaaaact gggtttttgt aagacttgtc gaaggcgacg cagtttccct
     2701 cagagacttt ctaacgcaag aactggtgga cgagattgga aggattgaac tgacgaatct
     2761 tcactggttc gaacgccgcc actaccactt cgactgcaac tggaaagtct tcgtcgataa
     2821 ctacctcgac ggcggttacc acgtccccta cctgcacaaa ggcctcgaca gcgtgctcga
     2881 ctacagcaac tacatgatcg aaaacggcac gcaccattgt ttgcagtgga gcccgatcgt
     2941 gaccgaaggc gccgaagcgc aaacgggcgc ggtgcgcaaa ggcgaccgcg cgctttacta
     3001 ctggatttat ccaaacttca tgatcaactg gtacgacggc gtgatggaca caaacctcgt
     3061 cataccgcgc ggagtggacc agacggaagt gatcttcgac ttctactttc ccgacgtggt
     3121 cagcgaagaa gcgcgcgcgc gcaacaccgc gagcgtcgcg gtgggccaac gcatacagga
     3181 cgaagacgtc gccatctgca agtcggtcca gcgcggccta aactcccgcg cctacacggc
     3241 cggccgtctc tccgtccgcc gcgaagccgg cgaacacctc ttccaccgct tgctgcacgc
     3301 cgatttgagc cacagatccc agtgatagaa acgaagccgc aaaccaagtc tcgagggcat
     3361 ttgttgcggg tgctcggggt ggggtttggg ttggcggtga ttgtggggaa tacgattggg
     3421 gcgggaattt ttagggcgcc cgggcagatt gccgagcagc ttccgtatcc gtggattttt
     3481 ctcggggtgt ggttgttggg tgggctgtat gcgctgctcg gggcgatttc gttggctgag
     3541 cttgggacga tgatcccgcg gtcgggtggg cagtatgttt ttgcgcgtta tgcgctgggc
     3601 gagtatgcgg ggtttattgt cgggtggagt gactggatct cgtcgtgtgg atcgactgcg
     3661 gcggtcgcgc tcgttgtggg gacgttttcg ggtgcgctcg tgccggcgtt gagtgggaag
     3721 gggccggcgg tcgcggcgac ggtggcgatc gtttttgcgg tgttgcagtg gcgcgggatt
     3781 gtttggggca acacgataca gaactttacg agtctgttga aggcgctcgc gttcttcgtg
     3841 ttgattgcgg cggcgttcgt gcttggtgga ggtggcgcgc ttaccggcgg agcagcggtg
     3901 gcaggtgaaa cggggctcaa cggttcgcaa atctctgcga gttcagtaat aacgatggcg
     3961 gcgattgtca cttcgcttca ggcggcgatc tatacgtatg acggctggag cggcgtgatc
     4021 tatttctccg aagaagtgca gaatcccgga cgcgacattc cacgtgcgct gctcggcggc
     4081 gtgttgacga tcacggcgat ctatctgctg gttaacctcg cgctgcttta cgtgttgccg
     4141 atctcaggga ttgccggcaa ggagttcgcg gcgggtgaag cggcgaacgc gatctttggg
     4201 caacacggcg acacggtctt ccgctgcatc accatcgtct cgatgctcag cgccgtcaac
     4261 gcgcttcatc tcatggccac gcgcgtgatc ttcgcgatga gccgcgacgg tttattcacg
     4321 cagcgagccg cggttgtgaa cgtgggcggc acgccaacgg tgtcgctgtt tttgagcgcg
     4381 acggttgcgg tgctgttcat ccttttcggg cagacgttcg aacgcgtcat catcatttgc
     4441 gcgttcttct tcgtcgcgaa ctacatactt tcgttcatct cgctgtttgt gttgcgcttt
     4501 cgcgaaccgg atacgccgcg gccgtatcgc gcgtggggtt atccggtgac acccggattg
     4561 gccctgattg ggtcgctatt gtttctggcg ggagcggtct atgcggatcg gaccaacagt
     4621 ctttacgcgc tgctgttgtt ggcggcgagt tatccggtgt ttcggttagt gaagttattg
     4681 aagtaagcgg cagccgtcgt tgtcgacgtc gagtatgcga atcgtcgatt cgatcttgtg
     4741 cgaactaaaa cactttgcga gccgcgcgcc gatctcgttt tcatgacttt ccactaacgc
     4801 cagaatactc ggaccggcgc cgctcagtgc aacgcctaac aacccgtcca ttcgcggcag
     4861 cgccaatgct tccgccaatc ccggcaccaa tgattcacgt tgcggctggt gcaactggtc
     4921 gcacatcgct tcccaaaaga gctcgtgttt ttggtgcgcg agtgcggcgg taaacaacgc
     4981 ggaccgttgc aggttgtgaa ctgcattcgc gcgactcacc atgcgcggta aagccgctcg
     5041 cgcgacgtgc gtcggaagct gtgaatgggg cgacaccacg accacacgca cctgcgacgg
     5101 ccagtcgaac ttcgcggtaa ctaccgttcg atcattgcgc agacaactga tcgtaaagcc
     5161 tccacacagc gaggcggcca cattatccgg gtggccttca aactcggtcg cgtagttgag
     5221 gagggattga tccgctattt cgtgttgcgt caaaagcgat aataacttga ggcctgcgac
     5281 gattgctgcc gcgctgctgc caagcccgct cgccagcgga atttcgttat ggacctcgag
     5341 ctcgacgggc ggcagcgaca cgccttcgcg gcgcgcggca aacgccatcg cgcgatagat
     5401 caggttcgac gcgttccgcg gcagcgcttc gttctctttc gcgcccgtgg ttgtgacgcg
     5461 acacggttcc gcggcttcag gcacggcttt cgcgcgcacc gtcaaataca ttttcagcgc
     5521 aagaccgaaa cagtcgaatc ccggtccgag gttcgaagta gaagctggaa cacgaatctc
     5581 tgccatcacg ataaggcaag ctaaagcttg aactcaaaac agatccttga actcacgaca
     5641 atcctttgat cgctgactcg atcgcgcacg gccgcgccgc gactcgcacg atcgagttcg
     5701 caaacgtacc gcgtatgctt tcgccgtttt cagtcgcgag cgtttggttg tgatacttga
     5761 tcacgtagtc agtatctttg agcacgtgcc c
//
LOCUS       DASWTX010000421         2418 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_4769, whole genome shotgun sequence.
ACCESSION   DASWTX010000421 DASWTX010000000
VERSION     DASWTX010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2418)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2418)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2418
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4769"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1464)
                     /locus_tag="VGD38_06460"
     CDS             complement(<1..1464)
                     /locus_tag="VGD38_06460"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: protein motif:HMM:NF008805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEY0727695.1"
                     /translation="MPEKKYLKESIKLGDKELTVETGKVAKQADGSVVIRYGDTMLLV
                     AAVSAPTPREGVDFFPLTVEYRESNYAAGRIPGNYFRREGRPNEKEVLTARLIDRPCR
                     PLFAEGYRNETQVIASVISADPDNNPDVIAITGASCALYLSDIPFLNPIAGVRIGLIE
                     GRYIVNPTYDEVRESRLNLIVAGTEEAIVMVEAGATEVSEEIMVEALMLAHKEINRLC
                     RWQRELYKALEVTKREVTPVVLDEEMQREIAEKYSEQLRNALDTGAQDKRTSYAAVDT
                     LKKEVVESYPEDQPERRHMAKLIFDHLKENIFRDDILNKRRRPDGRRFSEIRPITSEV
                     GWLPRVHGSALFTRGETQALVSTTLGTKEDEQFVDDLEKGEVRRRFLLHYNFPQYSVG
                     EVGRFGSSSRREIGHGALARRALEAVLPEDTEFPYTIRVVSEITESNGSSSMASVCGG
                     TLSLMDAGVPLKAPVAGVAMGLVMEGNKYAILTDIAGA"
     gene            complement(1799..2068)
                     /gene="rpsO"
                     /locus_tag="VGD38_06465"
     CDS             complement(1799..2068)
                     /gene="rpsO"
                     /locus_tag="VGD38_06465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEY0727696.1"
                     /translation="MALAKETKEKIVSDFRTHDSDTGSPQVQVALLSKRINDLTEHFK
                     THKKDNHSRRGLLKMVSQRRSLLDYLKRTDIERYHEVVNRLGLRR"
BASE COUNT          500 a          690 c          653 g          575 t
ORIGIN      
        1 agcaccggcg atgtcggtca ggatcgcgta cttgtttccc tccatcacga gtcccatcgc
       61 cacacccgcg acgggcgctt tgagtggcac accggcgtcc atcagcgaga gtgtgccgcc
      121 gcagaccgac gccattgaag acgaaccgtt cgactcggtg atttcggaaa cgacgcggat
      181 cgtgtacgga aactcagtgt cttccggtag cacggcttcc agcgcacggc gcgccaaggc
      241 tccgtgcccg atctcacgcc ggctcgacga accaaagcgg ccgacttcgc cgactgaata
      301 ctgcgggaag ttgtagtgca gcaggaatcg ccgtctgact tcgccctttt cgagatcgtc
      361 gacaaactgc tcgtcctctt ttgttccgag cgtcgtcgaa acgagcgcct gcgtttcgcc
      421 gcgggtgaaa agcgcagagc cgtgaacgcg cggcagccaa ccgacttccg aagtaatcgg
      481 acggatttcc gagaacctgc ggccatcggg acggcggcgt ttgttcagaa tgtcgtcgcg
      541 gaaaatgttt tccttgagat ggtcgaagat caacttggcc atgtgccgtc tctccggctg
      601 atcttccgga tacgactcga ccacttcttt cttcaacgta tcgaccgcgg cataactcgt
      661 gcgcttgtcc tgcgctccgg tatcgagagc gttgcgaagc tgttcgctgt acttctcggc
      721 gatctcgcgt tgcatctctt cgtcgagaac gacgggagta acttcgcgct tcgtgacctc
      781 gagcgccttg taaagctcgc gttgccagcg gcacagccgg ttgatttcct tgtgcgcgag
      841 catcagcgct tcaaccatga tctcttccga aacttcagtc gctccggctt cgaccatgac
      901 gatcgcttct tcagttcccg cgacgatgag gttcaaacgc gactcgcgca cttcgtcgta
      961 agtcgggttg acgatgtaac ggccttcgat gaggccgatg cgcacgccgg caatcggatt
     1021 caggaaggga atatcagaaa ggtaaagcgc gcacgacgcg cccgtgatcg caatcacgtc
     1081 cggattgttg tccgggtcgg ctgagatgac gctggcgata acctgagttt cgtttcggta
     1141 accttcggca aaaagcgggc ggcagggacg gtcgataagg cgggcggtca ggacttcttt
     1201 ttcgttcggg cggccttcgc gccgaaagta attgccgggg attcggccgg ccgcatagtt
     1261 tgattcgcgg tattcaacag taagcgggaa aaaatcaact ccttcgcgtg gcgtgggggc
     1321 actaacggca gctaccagca acatcgtgtc gccataacgg ataactaccg atccgtccgc
     1381 ttgtttggcg actttaccgg tttcgacggt caactccttg tcgcctagtt tgattgattc
     1441 tttcagatat ttcttttctg gcatcttgtt cgtctccttg ggacattcac acctgaaacg
     1501 agttcaggtc gcaggcgtct catccacccg ctgttttcgt tcgggcaagc actggggcct
     1561 gggttctttc taatttgccg ccaacgtgaa gcggattggc ataacaataa aggcggcacg
     1621 agcctcataa accgtgaagc tcatgccgcc tttttgctct aagctggccg tacacgtctg
     1681 cttgtttcca gtcaatcgcc gtcacgttcg gcactgccac aagctcttcg aaaagacgtg
     1741 ggcttgataa ttacagagac tcgaagatct ctctcgcttt gttttgtttt cgaatctgct
     1801 accggcgcag gcccaggcga ttcactacct cgtgatagcg ttcaatgtca gtacgcttca
     1861 ggtaatccag cagactccgt cgctgcgaga ccattttcag caggccgcgc cgcgaatgat
     1921 tatccttctt gtgagtcttg aaatgctcgg tcaggtcgtt aattctctta ctcagaagcg
     1981 ctacttgtac ctgcggtgat ccggtatcgg aatcgtgggt acggaagtca gacacaatct
     2041 tctctttcgt ttcttttgct aacgccactt gcttaaatgg ccctcctcga ctgcagtaaa
     2101 ctccgctaaa agcagtaacc gctaaactta aaaagcgcgt ccaatttacc acagcccgtt
     2161 cagaagcaca aaacggccgc cgaaccgggc tggaggcagg caggcgaggt atgcaccgac
     2221 caccgactaa agtcggtggg atgattttgc tggcgttgct agtggtaggc agggtatgca
     2281 accaccaccg actaaagtcg gtgggatgac ttaagcacaa agagcgcggc atcccaccga
     2341 cgcagtcggt ggttccttca taccctacct tgttgtttac ctaaggcagg tttactattc
     2401 ctcgcatgcc aacaaaac
//
LOCUS       DASWTX010000422         3299 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_50656, whole genome shotgun sequence.
ACCESSION   DASWTX010000422 DASWTX010000000
VERSION     DASWTX010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3299
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50656"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>3299
                     /locus_tag="VGD38_06470"
     CDS             <1..>3299
                     /locus_tag="VGD38_06470"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEY0727697.1"
                     /translation="QASLFDGIYRKDTRAQNPENVAYVIYTSGSSGRPKGVMVTHGAL
                     CNHMRWMRDAFAYSEADVFLQKTPIGFDASVWEFYIPLMVGAKLVMARPGGHQDSGYL
                     ARTMADHRVTVVQVVPTLLRMLVNEPGFSSCTDLRLVFCGGEALPKELAAQFLQKLPA
                     ANLFNLYGPAETTIDATYWNAQSWTSTATIPIGKPIANAGAYVLDQRLNPVPLGVVGE
                     LYLDGAGLARGYEGRADLTAERFAPNPFRTESGTRMYRTGDLVRRLPEGELEFLGRID
                     GQLKVLGSRVELGEVEAVLCGHADVRAAAVAGREDSSGERRLVAYVMSATERENLARE
                     LRDYLKERLPGHMVPSVFVRMDQLPLLPSGKIDPRALPAPDNFERIQQAEYRPPCTPV
                     EETLCGIWEEVLGRDPVGADDQFFELGGHSLLATQVVSRVKEALRVELPLARIFQTPV
                     LSELAAFIERHLKPGGEHTEPPLQAVSRERPLPLSFAQQRLWFIDQLEPANPLYNTPG
                     ALRLTGRLDVAALERALNEIVRRHETLRTTFNVVDGEPVQIISAPCTLTIPLTDLSEL
                     DEADREREAQRLIAAEAQRPFDLSHGPLLRAALLRLREDEHLLLFTMHHIISDGWSAG
                     VLAREATTRYAAFTGQETTPLAELPVQYADYAVWQRKWLRGETLNAQFDYWSTQLEGL
                     SPVLELPLDHPRPKVRSRRGAFVPVVFDEELTKSLKRLSRAEGATLFMTLLAGFQTLL
                     SRYTEQTDVAVGVPLANRHRREIEGLIGFFVNTLVMRTDLSGDPAFRELLARVREVAL
                     GAYAHQDLPFEMLVERFQPARDAGHTPFFNVLFVFQNLPHSTPEFPGLKIEQLDVSTG
                     TAKFDLMLSLEDSDGKLSGVLEYSTDLFEETTITRMLGHFETMLRGIVRQPECRISEL
                     PLLTTEEEQQLVVDWNQPAADFPQASCIHDLFNEQAAKTPDNVALIYGAEQLTYRELD
                     HAANRLAHYLKRDGVGPEAVVAIATGRSTRMAIAVLAVLKAGAAYLPLDPEYPYERLS
                     FMLENARACAVLTEQDLLERLPEQCEQVICLDTDAELIATESDAAPENHTVAENLAYV
                     IYTSGSTGRPK"
BASE COUNT          691 a          970 c         1008 g          630 t
ORIGIN      
        1 ccaagcctcg ctgttcgacg gcatttaccg caaagacaca agggcccaaa accccgaaaa
       61 cgtcgcatac gtgatctaca cgtccggctc atcaggacgg ccgaaaggcg taatggtcac
      121 acacggcgca ctctgcaacc acatgcgctg gatgcgcgac gctttcgcct acagcgaagc
      181 cgacgtgttt ctgcaaaaga cgccgatcgg cttcgacgcc tcagtgtggg agttctacat
      241 accactgatg gtgggcgcga agctggtaat ggcgcgtccc ggcggacacc aggacagcgg
      301 ctacctggcg cgcacaatgg ccgaccatcg cgtaacggtg gtccaggtcg tgccgacgct
      361 tttgcggatg ctggttaacg agccgggctt cagctcgtgc acagatctgc ggctcgtgtt
      421 ctgcggcggt gaggctttac cgaaagagct ggcggcgcaa tttctgcaaa aactccctgc
      481 ggcgaacctg ttcaacctgt atggaccagc ggaaacaaca atcgatgcca cttactggaa
      541 cgcgcaaagt tggaccagca cggcaacgat cccgatcggc aagccgatcg caaacgccgg
      601 cgcttacgtc ttggaccaac gcctaaaccc ggtgccgttg ggcgtcgtcg gagagttgta
      661 cctcgacggc gccggactcg cgcgcggtta cgaagggcgt gcggatctaa cggcggaacg
      721 attcgcgccg aatccgttca gaacagaatc tggaacgcgg atgtaccgca cgggcgatct
      781 tgtgcgccgg cttccggaag gcgaactcga gtttctcggc cgtattgacg ggcaattaaa
      841 ggtgcttggt tcgcgcgtcg agctgggtga ggttgaggca gtgttgtgcg gacatgcgga
      901 tgtgcgcgcg gccgcggtcg caggacgtga ggattcatcg ggcgagcggc ggctggtcgc
      961 gtacgtcatg agcgcgaccg aacgtgaaaa cctcgcgcgc gagcttcgcg attatttaaa
     1021 ggagcggctg ccgggtcaca tggtcccgag tgtgttcgtg cgaatggacc agttgccgct
     1081 gttgccgagc ggaaagatcg atccccgagc gctaccggcg cctgacaatt tcgagcggat
     1141 tcagcaggcc gagtatcggc cgccgtgcac gccggtggaa gaaacgttgt gcggaatttg
     1201 ggaagaagtg cttggccgag atccggtagg cgcagacgat cagttcttcg aactcggcgg
     1261 gcattcgcta ctcgcgacgc aagtcgtctc gcgcgtgaaa gaagctttgc gcgtggagtt
     1321 gccgctcgca cgtatcttcc agacacccgt actttcggaa ctggcagcgt tcatagaacg
     1381 ccatctgaaa cccggcggcg aacacaccga accgccgcta caagccgttt cgcgcgaacg
     1441 gcctttgccg ctttcgttcg ctcagcaaag actctggttc atcgatcagc tagagccggc
     1501 caatcctcta tacaacacgc ccggtgcgct gcgtttgacg ggccgcctcg acgttgccgc
     1561 gctggaacga gcgttgaatg agatcgtgcg ccggcacgaa acgttgcgaa cgaccttcaa
     1621 tgttgtcgac ggcgagccgg tgcagatcat ttcagcgccg tgcacgctga ccattccgtt
     1681 aaccgatctc tcggaactgg acgaagcaga tcgcgaacgt gaagcgcaac gactgatcgc
     1741 cgctgaggcg caacgtcctt tcgacttgtc gcacggacca ctgctgcgcg ccgcgttgtt
     1801 gcgtttgcgt gaagacgagc acctgctgtt gttcacgatg caccacatca tcagcgacgg
     1861 ctggtccgcc ggcgtccttg cacgcgaagc cacgacgcgc tacgccgctt tcaccggaca
     1921 agaaacaacg ccgctcgcgg agctgcctgt gcaatacgcg gactacgccg tctggcaacg
     1981 caagtggctg cgcggagaaa cactcaacgc acagtttgat tactggtcca cgcagctcga
     2041 aggcctgtct ccggtgctcg aattaccgtt ggaccacccg cggccgaaag tgcgcagccg
     2101 gcgtggtgct tttgtgccgg tagtgttcga cgaagaactg acgaaaagtt tgaagaggct
     2161 gagtcgcgca gaaggcgcga cgttgttcat gacgttactc gccgggtttc aaaccctgct
     2221 ctcacgctac acggaacaaa ccgacgtcgc ggtcggcgtc cctctcgcga accgtcaccg
     2281 gcgcgagatt gaaggtctga tcggtttctt cgtcaacaca ctcgtgatgc gcacggatct
     2341 gtcaggcgat ccggcgtttc gcgaactcct cgcgcgcgta cgagaagtcg cgctcggagc
     2401 ttacgcacat caggacctgc cgttcgagat gctggtggag cgattccaac ccgcacgcga
     2461 cgcgggacac acaccttttt tcaacgtgct gtttgtattt caaaacctgc cgcacagcac
     2521 gccggagttt ccgggactga agatcgaaca actggacgtc agtacgggca cggcgaagtt
     2581 cgatctgatg ttgtcgctcg aggactctga cggaaagtta agcggagttc ttgagtacag
     2641 cacggacctg ttcgaagaga ccacgatcac gcgaatgctg gggcattttg aaaccatgct
     2701 tcgcggcatt gtgcgacaac cggagtgccg catatcagag ttgccgctgc ttacaacgga
     2761 agaggagcag caactcgttg ttgactggaa ccaaccggcc gcggattttc cgcaagcgag
     2821 ctgcatccac gatctcttca acgaacaggc ggcgaagacg ccggataacg tcgcgctgat
     2881 ctacggcgcg gagcaactga cctatcgcga gttggaccac gcggcgaacc ggctggcgca
     2941 ttatctcaaa cgagatggcg ttggaccgga agcggtcgtc gctatcgcaa cgggacgttc
     3001 gacgcgcatg gcgatcgcgg tgctcgcagt gttgaaggcc ggcgctgctt acctgccact
     3061 cgatcccgaa tacccgtacg aacgtctttc gttcatgctc gaaaacgcgc gcgcgtgcgc
     3121 ggtgttgacc gaacaagatc tgcttgaacg tttgccggaa cagtgcgagc aggtgatctg
     3181 tctcgacacc gacgcggagt tgatcgcgac tgaaagcgat gctgctccgg aaaaccatac
     3241 agtcgctgag aatctcgcgt acgtcatcta cacgtcagga tcgactggcc ggccgaaag
//
LOCUS       DASWTX010000423         1675 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_28870, whole genome shotgun sequence.
ACCESSION   DASWTX010000423 DASWTX010000000
VERSION     DASWTX010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1675
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28870"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..554
                     /locus_tag="VGD38_06475"
     CDS             <1..554
                     /locus_tag="VGD38_06475"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NDP-sugar synthase"
                     /protein_id="HEY0727698.1"
                     /translation="TINAGTYILEPKVLDFLPPGENYSFEYGLFPDLLKRKEPFYAHI
                     PPRTYWIDIGTPERYLQAHADLLANRVARIHVKERRGQFDAATVAEIDDLSMIGDDCQ
                     IKPGAQIINSVLGPGCFVEERARVENSVIWPHTRIATTATVVGAITGRGCHIGRSAVV
                     GPGSVLGDKTSLTDYTITGGRTE"
     gene            551..>1675
                     /locus_tag="VGD38_06480"
     CDS             551..>1675
                     /locus_tag="VGD38_06480"
                     /inference="COORDINATES: protein motif:HMM:NF014877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucomutase/phosphomannomutase family
                     protein"
                     /protein_id="HEY0727699.1"
                     /translation="MTDSPVEIKFGTDGWRAIIAREFTFVNVERVAQAYADLLTREAD
                     GRTPFVVIGFDRRFLSEKFAARTAEVMAGNGFQIALFGEAQPTPLISWAVKDLGATGG
                     VMITASHNPANFNGFKIKAPWGGSASPETTRAVEQLVDANAPKKATVADDGHQLLDAP
                     TARYREQIASYIDLDRLKSATGQVIVDPMHGSAGRWVESFLGGGTLAVETIRDYRDPL
                     FGGVNPEPIDQNLAPLKQRVVETKALVGLATDGDADRVGAVDERGSTMTMHDVVPLLL
                     LHLARNRKMTGSVVVTVSQSVLTKRIAHAMGLRVYETPIGFKYIADLMLKEDILLGAE
                     ESGGIGVKGHIPERDGVLNSLLFLEAIVSAGKPPSEMLADL"
BASE COUNT          339 a          472 c          533 g          331 t
ORIGIN      
        1 acacgatcaa tgcgggaacg tacattctcg aaccaaaagt gctcgacttc ctgcctccgg
       61 gcgagaacta ttcgtttgag tacggcctgt ttcccgatct gctgaaacgt aaagaaccgt
      121 tttacgcgca catcccgccg cgcacgtact ggatcgacat cggcacgccg gagcgttatc
      181 tccaggcgca cgcggacttg ctcgcgaatc gcgtcgcgcg aattcacgtt aaagagcgcc
      241 gcgggcagtt tgacgcggcc accgtcgcgg aaatcgacga cctttcgatg atcggcgacg
      301 actgccagat caaaccgggc gcgcagatta tcaactccgt tctcggcccg ggttgttttg
      361 tcgaggaacg cgcgcgcgtc gagaattctg tgatctggcc gcacacacgc atcgcgacga
      421 cggcgacggt cgtcggtgcg atcacgggcc gtggttgtca catcggacgc tcggccgtgg
      481 ttggaccagg cagcgtgttg ggcgacaaga cttcgttaac ggattacacg atcaccggag
      541 gtcgaactga gtgaccgact cgccggtgga gatcaagttt ggcacagacg gctggcgcgc
      601 gatcatcgca cgcgagttta cgtttgtgaa cgtcgagcgc gtcgcgcagg cgtatgccga
      661 tttgttgacg cgcgaagctg atggacgtac gccgttcgta gtgatcgggt ttgatcggcg
      721 gtttttgtcg gagaagtttg cggcgcgtac ggctgaagtg atggcgggca acgggtttca
      781 gatcgcgctg ttcggtgaag cgcagccgac gccgctgatt tcatgggccg tgaaggatct
      841 cggcgcgacg ggcggcgtga tgatcacggc gtcgcacaat cctgcgaact tcaacggttt
      901 taaaatcaaa gcgccgtggg gcggaagcgc atcgccggaa acgactcgcg ctgtcgaaca
      961 gctcgtcgat gcgaacgcgc cgaaaaaagc cacggtcgcc gacgacggtc atcaactgct
     1021 cgacgctccc accgctcgtt atcgcgaaca gatcgcgtcg tacatcgatc tcgacagatt
     1081 gaaaagcgcg accggacaag tgatcgtcga tccgatgcac ggttcggccg gacgctgggt
     1141 cgagagtttt ttaggtggcg gcacgttggc ggtcgaaacg atccgcgact atcgcgatcc
     1201 gctgtttggc ggcgtcaatc cggaaccgat cgatcagaac ctcgcgccgt tgaagcagcg
     1261 cgtcgtcgaa acgaaagcgc tggttggtct ggcaacagac ggcgatgccg atcgcgtggg
     1321 cgcggttgac gaacgcggca gcacgatgac gatgcacgac gtcgtgccgt tgctgttatt
     1381 acacctcgcg cgcaatcgaa agatgacggg ctcggttgtc gtgacggttt cgcaatcagt
     1441 tttgacgaaa cgcatcgcac acgcgatggg cctccgtgtc tacgaaacgc cgatcggttt
     1501 caagtacatc gccgacctga tgctgaagga agacattttg ctcggcgcgg aagagtcggg
     1561 cggcatcggc gtcaagggcc acatccccga acgcgacggc gtgctgaatt cactgctctt
     1621 tctcgaagcg atcgtcagtg ccggtaaacc gccgtcggag atgcttgcgg atctg
//
LOCUS       DASWTX010000424         2038 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_28886, whole genome shotgun sequence.
ACCESSION   DASWTX010000424 DASWTX010000000
VERSION     DASWTX010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28886"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..660
                     /locus_tag="VGD38_06485"
     CDS             <1..660
                     /locus_tag="VGD38_06485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727700.1"
                     /translation="AMPVPRASFYEYDELIEAGTDHFSFCYEFENPKVFAEICPGKGA
                     HAERFNRLTQERKPLSLRPSRATTIRHGFAMIARFFPGVRDELAAIDEEIVRGALGPV
                     EPGKAHCFEDQYLSSGGQLYELMMGHDRFVADVRSLTESLLKRRGLALGICCHPYDIC
                     TELIARAAGVIVTDERGGRLHAPLQVDPDLSWAGYANDWIRRQIEPLLHAALRERGLI
                     D"
     gene            670..>2038
                     /locus_tag="VGD38_06490"
     CDS             670..>2038
                     /locus_tag="VGD38_06490"
                     /inference="COORDINATES: protein motif:HMM:NF020133.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase family protein"
                     /protein_id="HEY0727701.1"
                     /translation="MGYEIVRGNAHGLSDVSQFLETLGALDDHGLPELRTFFDSRCEI
                     TIARAPGRLDVMGGIADYSGSLVLELPIAEATFVALQKDDAPRISIVSLVDNQTRALS
                     FAMPLADFEHEGAPIEYDEARAYFSGDPANAWAAYVAGVFLVLARERGTRFSHGARLL
                     ISSRVPEGKGVSSSAALEVATMSAVAAAFNIEINARDLALLCQRVENLVVGAPCGVMD
                     QMTAACGEAHQLLALLCQPAELVASIALPEELAVWGLDSGVRHSIGGGDYGSVRAGAF
                     MGLRTLAEVAGSDADYLANIEPHEFEEKFARHLPHSMLGAEFLARFGNTNDSVTKVES
                     DRTYAIAAPARHPIYENFRVRRFAELLQQPGGLSNDEKIALGKLMYESHDSYSACGLG
                     SQATDRLVELVRATGPDTGLFGAKITGGGSGGTVAVLGDRNAERTVEKVAARYAELMR
                     YEPYIF"
BASE COUNT          391 a          550 c          668 g          429 t
ORIGIN      
        1 gccatgccgg tgccgcgagc ctccttctac gaatacgatg aattgatcga ggcggggacg
       61 gatcactttt cgttctgcta cgagttcgag aatccgaagg tcttcgcgga gatctgtccc
      121 ggcaaaggcg ctcacgccga gcggttcaat cgcctgacac aggaacgaaa accgctatcg
      181 ctccggccgt cgcgcgcgac gacgatccgg cacggcttcg caatgattgc gcgtttcttt
      241 cccggcgtgc gcgatgagct tgccgcgatc gacgaggaga ttgtgcgcgg cgcgctcggt
      301 ccggttgaac ccggcaaggc gcattgtttc gaagatcagt acctgtcttc cggcggacaa
      361 ctgtacgagt tgatgatggg ccacgatcgt tttgtagccg acgttcgatc tttgactgag
      421 tcgctgctga aacgccgcgg cctcgcgctc gggatctgct gtcatcccta cgatatctgc
      481 acggaactga tcgcgcgcgc ggccggcgtc atcgtgactg acgaacgcgg cgggcgtcta
      541 catgctccgc tgcaagtcga tccggatctt tcgtgggccg gatacgcgaa tgattggata
      601 cgacggcaaa tcgagccgtt gttgcatgcg gctctgagag aacgcggttt gatcgattag
      661 ttaagcaacg tgggttacga aatcgttcgc ggcaatgcac atggcctgag cgacgtttcg
      721 cagtttctcg aaacgcttgg cgcgctcgac gatcatggtc tgccggagtt gagaacgttt
      781 tttgattccc ggtgcgagat cacgatcgcg cgcgcgcccg gccggctcga cgtgatgggc
      841 ggcattgcgg actattcagg ttcgctcgtg ctggagttgc cgatcgccga agccacgttc
      901 gtggcgctgc aaaaggatga cgcgccgcgc atcagcatcg tcagtctcgt cgacaatcaa
      961 acacgggctt tgagtttcgc gatgccgttg gcggacttcg agcacgaagg cgcgccgatc
     1021 gaatacgacg aggctcgcgc atatttctcg ggtgatccgg ctaacgcgtg ggcagcttac
     1081 gtggccggag tttttctggt tctggcgcgc gaacgaggga cgcggttcag tcacggcgca
     1141 cgtctgttga tttcatcgcg tgttcccgag ggtaaaggcg tgagttcgtc ggcagctttg
     1201 gaagttgcga cgatgagcgc ggtcgctgcg gcgttcaata ttgaaatcaa cgcacgagat
     1261 ctcgcactgc tgtgtcagcg agtcgagaat ctggttgtcg gcgcgccgtg tggtgtgatg
     1321 gaccagatga ccgcggcgtg tggggaagcg catcaactgc tcgcgctcct gtgtcagccc
     1381 gcggaattgg ttgcgtcgat cgcgctaccg gaggagttag cggtttgggg attggattcc
     1441 ggagtgcgcc actcgatcgg cggtggagat tacggatcgg tgcgggcggg tgcgttcatg
     1501 ggtctgcgga ctctcgcgga agtcgctgga tcagacgcgg actacctggc gaacattgag
     1561 ccgcacgagt ttgaggagaa gtttgcccgg catttaccac actcgatgct cggcgcggaa
     1621 tttctcgcgc gatttggaaa cacgaacgac agcgtgacta aagttgagag cgatcgcacg
     1681 tatgcgatcg ctgcgccggc gaggcatccg atttacgaga acttccgcgt gcgccgcttc
     1741 gcggagttgc tgcaacagcc cggcggtttg agtaacgacg aaaagatcgc gttgggaaaa
     1801 ctgatgtacg agtcgcacga cagctattca gcgtgcggac ttggttcaca ggccacggat
     1861 cggttggtcg aactcgtgag agcaacagga ccagacacgg gactcttcgg cgccaagatc
     1921 acaggcggcg gcagtggtgg aacagtcgcc gtgctcggcg atcgcaacgc cgaacgcacg
     1981 gtggaaaaag tcgcagcgcg ctatgcggaa ctgatgagat acgaacccta catcttca
//
LOCUS       DASWTX010000425         1902 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_354364, whole genome shotgun sequence.
ACCESSION   DASWTX010000425 DASWTX010000000
VERSION     DASWTX010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1902)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1902
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_354364"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..655)
                     /locus_tag="VGD38_06495"
     CDS             complement(<1..655)
                     /locus_tag="VGD38_06495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727702.1"
                     /translation="MMTMTTIERKLLIALVVSLAAVSVSAQKLIGSGWDGVVVSADET
                     RREITLNNLRGDKKQTFVGVLEPGYMQKLKDGTYRELQMSEFKPGLRIRVFYKEKSQE
                     VSGKKVKVKMIHRIEFLGRDQFTMIREILGLPPSTPVARADPDKLPPANPLKVYTSFQ
                     QPEVEKRFRTWVERWNKEDGKKYGMIELVDQLAKSDMSVVFFGALTSRHTRLHFKCTI
                     "
     gene            710..1063
                     /locus_tag="VGD38_06500"
     CDS             710..1063
                     /locus_tag="VGD38_06500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727703.1"
                     /translation="MPDEEKTTLRLEYLNREAPLVPGEDYKIRFKIVDKTGKRPNLVL
                     KDVGVLVFLSPGIWQQRQVARPTGDGVYEVTVNVPDTGVYLVFIESPSQRVQYRQLPH
                     LTLHAKPAPAARMSQ"
     gene            1259..>1902
                     /locus_tag="VGD38_06505"
     CDS             1259..>1902
                     /locus_tag="VGD38_06505"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY0727704.1"
                     /translation="MKRFIFPMLWIGFALTLLSALFVVERRTQAQIVTDIQLSIPTIL
                     DAPLDRKVSRDILTKVSSGKGAELIRVIIQPATAPELSLDSTLEFTGSNIRKLKSFRS
                     RIITLPAQTAVNLASRSDVAYVSLNRDVQPMGHLSSTTGADQVRTPPNTTSPRLDGTG
                     VGIAILDSGIDTAHHSFLNRSNGVRVVYSEDFTGEGRTDDPYGHGTHVASLAAG"
BASE COUNT          427 a          581 c          474 g          420 t
ORIGIN      
        1 ggatcgtaca tttgaaatgt aaacgagtat ggcgactcgt caaagcccca aagaaaacca
       61 cggacatgtc cgacttcgcc aactgatcca ccagctcgat catgccgtac ttcttcccat
      121 cttccttgtt ccagcgctcg acccaagtgc ggaaccgctt ctcgacctcc ggttgctgaa
      181 acgacgtgta cactttcagc ggattagccg gcggcaactt atcaggatca gcacgcgcga
      241 ccggagtcga gggcggcaag ccaagtattt cccgaatcat cgtgaattgg tcgcgcccaa
      301 gaaactcgat ccgatgaatc atcttgactt tgactttttt ccccgagacc tcttgcgact
      361 tctctttata gaagacgcga atgcggagtc cgggtttgaa ttccgacatc tgcagttcgc
      421 gataagtgcc gtctttcaac ttctgcatgt agccgggttc aagcacgccg acgaacgtct
      481 gcttcttgtc gccgcgtaaa ttgttgagcg tgatttcacg cctggtctcg tcggcactca
      541 caaccacacc atcccacccg gagccgatca gcttctgagc ggaaacggaa acagccgcga
      601 gcgaaaccac cagggcaatc agtaattttc gttcgatcgt tgtcattgtc atcacactag
      661 cattaacccc aaggtcaaga aaatgtttct gccctgacca aatcccgcca tgccggacga
      721 ggaaaagacc acgctccggc tggagtacct gaaccgggaa gcgccgctcg tgcccggcga
      781 ggactacaaa attcgtttca aaattgtgga caagacgggc aagcgtccca atcttgtgtt
      841 gaaggacgtc ggggtcctgg ttttcctttc tcccggcatc tggcagcagc gccaggtcgc
      901 ccggccaacc ggtgacggcg tctacgaagt gaccgttaat gttcccgaca caggtgttta
      961 tctcgtgttt atcgagagcc cgtcacagcg ggttcagtac cgccaactgc ctcatctgac
     1021 cctccacgcg aagccggcgc cggcagcgag aatgtcccaa taagccccca aaagcccctg
     1081 tttctcgaca caaaaccttt aaatttagcg cgttgaaacg ttgtttatcc tttgttagac
     1141 ttccttcccc ccgaccatac gccccggacg gtgccgagaa aatcgccgtg attcttcttc
     1201 acctgtcgta agcgtcgcag ccccgagcct cagcacggtt tttaccggag taccaggaat
     1261 gaagcgcttt attttcccga tgctgtggat tggttttgct ttaaccctcc tttcggcgtt
     1321 gttcgtcgtc gagagaagga cgcaggcgca aatcgtcacc gatatccaac tgagcatccc
     1381 cacgattctc gatgcgccgc tggatcgcaa agtctcgaga gacattctta cgaaagtcag
     1441 cagcggcaaa ggcgccgagc tgatccgcgt catcattcaa ccggctaccg cacccgagtt
     1501 gtcgctcgat tcgacactgg aattcacggg cagcaatatt cgcaagctca agagttttcg
     1561 ttcgcgcatc atcacgttgc cggcgcaaac ggcagtcaat ctcgcttcac gttcagacgt
     1621 cgcttacgtc tcgttgaacc gcgacgtgca gccgatgggc catctctcgt cgacgactgg
     1681 cgcggatcaa gtcaggacac cgcctaacac gacgagcccg cgactcgacg gcacaggcgt
     1741 cggtatcgcg attctcgatt cgggaatcga cacggcgcat cactcgtttc taaatcgctc
     1801 gaacggcgtg cgcgttgttt acagtgaaga tttcaccggc gaaggacgca ccgacgatcc
     1861 ctacggacac ggaacgcacg tcgcatcact cgccgccggc aa
//
LOCUS       DASWTX010000426         3800 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_221642, whole genome shotgun sequence.
ACCESSION   DASWTX010000426 DASWTX010000000
VERSION     DASWTX010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3800)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3800)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3800
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221642"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1699
                     /locus_tag="VGD38_06510"
     CDS             <1..1699
                     /locus_tag="VGD38_06510"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HEY0727705.1"
                     /translation="GPAVGRPKTATFRTFDLVGLDVFTHVIKNLYENLPEDEERDMFV
                     VPEMLAQMVQRGLLGNKTKGGFYRKQKGEGGKNEFWTLDTATLEYRPSQKVKLPALDM
                     AKNIEDLPERIKGLVWGKDRVGAFLWKTITKTLTYAAKRIPEIADNVVEVDRAMRWGF
                     GWELGPFEVWDAIGVEKSVARMKEEGIAVPSNVEAMLAAGATSFYKSESGQQSYFDFN
                     QGKYVPLADPPGVLILKSIKDRTGVIKKNSGASLIDIGDGVACLEFHSKMNAIGGDTL
                     QMLKFALGEVDKNFVGLVVGNQGPNFCVGANIMLMLMEAQEENWEELDMMARVFQQST
                     MSLRYSPKPVVVAPFQMVFGGGCEMVLHADRVRASAETYIGLVEVGVGIIPAGGGTKE
                     LLLRALDLIPKGTSDADPFPFVKRAFETIALAKVATSAEEARALGFLSADDTISMNAD
                     RLIADAKKEVLALAASGYVQPQQRTDILALGEPALATLKLGIHQMKRAGYISDHDAEI
                     GTQLARILTGGDLNHPTLVSEQYLLDLEREAFLKLVSTRKTQERIAHMLKTGKPLRN"
     gene            1785..2963
                     /locus_tag="VGD38_06515"
     CDS             1785..2963
                     /locus_tag="VGD38_06515"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR01930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HEY0727706.1"
                     /translation="MRDAVIVSAVRTAVGKAPKGTLRTTRPDEMGAAVIKDAVGRVPG
                     LENSEIEDVIMGCAMPEAEQGMNVARAAAIRAGLPVETSAMTINRFCSSGLQSIAMAA
                     DRIKTGAAEVIVAGGLETMSMIPMGGHIIRPNPYLVDHYPDFYLSMGLATENVARKYE
                     VTRDEQDEFALRSHTRAAAALDAGKFKDETVPLHVVLEELDEKGKKQRREVVFDKDEG
                     VRRDSSAEGLAKLKPAFHVKGTITAGNASQMSDGAAAAIVMSDSRAKSLGVKPLARFI
                     AYATAGCPPEEMGIGPVFAIPKVLKLAGLTLADIDLIELNEAFAAQSLAVIKTLGLDP
                     EKVNVNGGAIALGHPLGCTGAKLTASILRELERRNGRYGMVTMCVGGGMGAAGILERL
                     "
     gene            2990..>3800
                     /locus_tag="VGD38_06520"
     CDS             2990..>3800
                     /locus_tag="VGD38_06520"
                     /inference="COORDINATES: protein motif:HMM:NF014790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEY0727707.1"
                     /translation="MSAVAEQKKIIKGGSFLIEERTPEEIFTPEDFTEEHRMIADTTR
                     QFVDNEVMPHIDKLEKHDWDLARELVRQAADLGLIGANIPEEYGGLGLDQTSGALIGE
                     NIGRSASFATTLGAESGIGLLPIVYFATDAAKQKYLPKIASGELITAYALTEAGSGSD
                     AMAAKATARLSDDGKEYILNGEKMWITNGGFADIFIVFAKVDGDKFSAFIVERQPGLT
                     SGAEEHKMGIKGSSTTALVLSDVRTPVENLLGEVGKGHKIAFNVLNIGRFKL"
BASE COUNT          869 a          977 c         1229 g          725 t
ORIGIN      
        1 tggaccagca gtcgggcgcc cgaagacagc aaccttccgg acatttgatc tggttggcct
       61 ggacgttttc actcacgtca tcaagaacct ttacgagaat ctgccggaag acgaagagcg
      121 cgacatgttc gtcgtgcccg agatgctcgc gcagatggtc caacgcgggc tgctcggcaa
      181 caagaccaaa ggcggcttct atcgcaagca gaaaggcgaa ggcggcaaga acgagttttg
      241 gacgctcgac acagccacgc tcgaataccg gccatcgcaa aaagtgaaac tgcccgcgct
      301 cgacatggcg aagaacatcg aagacctgcc cgagcgaatc aagggtctcg tttggggcaa
      361 ggatcgcgtg ggcgcgtttc tctggaagac gatcacgaag acgctgacgt acgctgcgaa
      421 acgaattccc gagattgccg acaacgtggt ggaagtcgat cgcgcgatgc gttggggctt
      481 tggttgggag ctcggacctt tcgaggtttg ggatgcgatc ggcgtcgaga agtcagtcgc
      541 gcggatgaaa gaagaaggga ttgcggttcc atccaacgtc gaagcgatgc tcgcggcggg
      601 cgcgacctcg ttctacaaaa gcgagagcgg ccaacagtca tactttgatt tcaaccaggg
      661 caagtatgtt ccgctcgccg atccgccggg cgtgctgatt ctgaagtcga tcaaagatcg
      721 cacgggcgtc atcaagaaga actccggagc gtcgctgatc gacatcggcg acggcgttgc
      781 gtgtctcgag tttcactcga agatgaacgc catcggcggc gacacgttgc agatgttgaa
      841 gtttgcgctt ggcgaagtcg acaagaattt cgtcggactc gtcgtcggaa accagggacc
      901 aaacttctgc gtcggcgcca acatcatgct gatgttgatg gaagcgcagg aagagaactg
      961 ggaagagctc gacatgatgg cgcgagtctt tcagcagtcg acgatgagtt tgcgttattc
     1021 gccgaagccg gtcgtggttg cgccgtttca gatggtgttt ggtggtggtt gtgaaatggt
     1081 gttgcacgcc gatcgcgtgc gcgcgtcggc tgagacgtac atcgggttgg ttgaagtcgg
     1141 cgtggggatt atcccggcgg gtggcggtac gaaggagttg ctgttacgcg cgttggattt
     1201 gattccgaaa ggaacgagcg atgccgatcc gtttccgttt gtgaagcgcg cgtttgagac
     1261 gatcgcgctt gcgaaggttg cgacttcggc ggaagaagcg agggcgctcg ggttcctgtc
     1321 ggctgacgac acgatttcga tgaatgcgga tcgcttgatt gcagacgcga agaaggaagt
     1381 gttggcgctt gcggccagtg gctatgtcca gccgcagcag agaacggata ttctcgcgtt
     1441 gggcgagccg gcgcttgcga cgttgaaact cgggattcat cagatgaagc gtgccgggta
     1501 tatttccgat cacgacgcgg agattgggac gcagctcgcg cgtattttga cgggcggaga
     1561 tttgaatcac ccgacgctgg tttctgaaca ataccttttg gacctcgagc gcgaggcgtt
     1621 tttgaagctg gtcagcacgc gtaagacgca ggaacggatc gcacacatgc ttaagactgg
     1681 aaagccgctg agaaattagc gcggcgcttg ggttaggcca gagggaaggg atttaagaac
     1741 aaagaaaacc cggatcaaaa acagattaga gaagaagaga agaaatgaga gacgcagtaa
     1801 tcgtatcagc agttcgcacg gcagttggca aagccccgaa aggcacgttg aggacaacgc
     1861 ggccggatga gatgggcgcc gctgtaatta aggacgcggt tggccgtgtg cccggtctgg
     1921 aaaattccga gatcgaggac gtgatcatgg gttgcgcgat gccggaagca gagcagggaa
     1981 tgaacgtcgc gcgcgcggcc gcgattcgcg cggggctccc ggtcgaaacg agcgcgatga
     2041 cgatcaaccg gttctgttcg tcggggttgc agtcgattgc gatggctgcc gaccgaatca
     2101 aaaccggcgc ggcggaggtc atcgtcgccg gcggtttgga aacgatgtcg atgattccga
     2161 tgggcggaca catcatccgg cccaatccgt atcttgtcga tcactatccc gatttctact
     2221 tgagcatggg actcgccacc gagaacgttg cgcgcaagta tgaggtgacg cgcgacgagc
     2281 aggacgagtt tgcgctacgt tcgcacacgc gcgccgctgc ggcgctcgat gcaggcaagt
     2341 tcaaggatga aacggtgccg ttgcacgtcg tgctggaaga gttggacgaa aagggcaaga
     2401 agcaacgccg cgaggtcgtg tttgataaag acgaaggcgt gcggcgcgat tcatccgcgg
     2461 aaggcctcgc caagttgaag ccggcttttc acgtgaaggg cacgatcacc gcgggcaatg
     2521 cgtcgcagat gtctgacggc gcggcggctg cgatcgtgat gtctgactcg cgggcgaaat
     2581 cgctcggtgt gaaaccgttg gcgcggttca ttgcgtacgc gacggcaggt tgtccgccgg
     2641 aagagatggg catcggaccc gtgtttgcca ttccgaaagt cttgaagctt gcgggattga
     2701 cgctcgcgga tatcgatctg atcgagttga acgaagcgtt tgcggcgcag tcgctggcgg
     2761 taattaaaac attgggactc gatccggaaa aggttaacgt gaacggcggc gccatcgcgt
     2821 tgggccatcc gctgggctgc accggagcaa agctcacagc cagcatcctg cgcgagttgg
     2881 agcgccgcaa cgggcgatac ggaatggtaa cgatgtgtgt cggcggcggc atgggcgccg
     2941 ctggaattct cgaaaggtta taaagcgacg aaaggcagga gaaaacgaaa tgtcagccgt
     3001 agcggaacag aagaagatca tcaaaggcgg ttccttcctg atcgaagagc gcactccgga
     3061 ggagatcttt acgccggagg atttcaccga agaacatcgc atgatcgccg acaccacgcg
     3121 gcagtttgtc gacaacgaag tcatgccaca catcgacaaa ctcgaaaagc acgactggga
     3181 cctcgcgcgt gaactggtcc gtcaagcggc tgacctcgga ctcatcggcg cgaacattcc
     3241 cgaagagtac ggcggtctcg gtctcgatca aaccagcggc gcgctgattg gcgaaaacat
     3301 cggccgctcc gcttcgttcg ccaccacgct cggcgccgaa agcggcatcg gcctcttgcc
     3361 gattgtttac ttcgccactg acgccgcgaa acagaagtac ctgccgaaga tcgcctcggg
     3421 cgaattgatc acggcttacg cattgaccga agccggttcc ggttcagacg cgatggccgc
     3481 aaaagccact gcacgtctca gcgacgacgg caaggaatac atccttaacg gcgagaagat
     3541 gtggatcacc aacggcggtt tcgccgacat cttcatcgtg tttgcaaaag tcgacggcga
     3601 caagttctcg gcgtttatcg tcgaacgcca accgggtctc acgtccgggg cggaagaaca
     3661 caaaatgggt atcaaaggct cgagcacaac cgcgctcgtg ctttccgacg tgcgcacgcc
     3721 ggttgagaac ctgctcggcg aagtcggcaa aggacacaag atcgctttca acgtgctgaa
     3781 catcggccgc ttcaagctgg
//
LOCUS       DASWTX010000427         6026 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_288699, whole genome shotgun sequence.
ACCESSION   DASWTX010000427 DASWTX010000000
VERSION     DASWTX010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6026
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288699"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..235
                     /locus_tag="VGD38_06525"
     CDS             <1..235
                     /locus_tag="VGD38_06525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727708.1"
                     /translation="YGTAKGGEKYFSPERIQLLLFTLGTAMFYLNDVMQNRTSGVLPD
                     VSTETLALLGGSHAVYLSGKAYMMLLKSTGKGE"
     gene            238..906
                     /locus_tag="VGD38_06530"
     CDS             238..906
                     /locus_tag="VGD38_06530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727709.1"
                     /translation="MLLLLLMQAAQTSPTPVQTPYVQPWVGALAAWVALGFLGLIGVA
                     ILYYVFTGRINLSGLISEPTGDASMSRFQLLVFTFVIAASLFLIIASAAPSPKFPDVI
                     PSGILMLLGISASSYLVSKGIQQTSPEGRAGAGPQVKIAAEKNTTTFGGDTIQFQAEV
                     SGLEDKTVLWTILDPPNFGTIDADGLYTPPADGEPDTVVIKAASKAKLNVSDTESIRV
                     ERAG"
     gene            993..1904
                     /locus_tag="VGD38_06535"
     CDS             993..1904
                     /locus_tag="VGD38_06535"
                     /inference="COORDINATES: protein motif:HMM:NF013395.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HEY0727710.1"
                     /translation="MIPLALSLLHPAVERRTRTQPTEEARIDRPAPGPRPGPTAIKPG
                     DSVHLTLGNPSDATDDPGNENNFLMVKDQYVLSYNNTNGGPNWVTWHLKASDIGTEAR
                     GDFRTDNTLPPDFKMITKDDYTGTKFDRGHVCNSKDRTDTRENNDATFFMTNILPQAP
                     DNNQGPWRILEDFERSLAQQGNELYITAGAFGTGGIGGKGPADSINEGEINVPKIFWK
                     VIVVLPDGNDDLKRIDANTRVIAVCMPNKQGIRNTPWQTFVTTVKNVETAAGVDLLSL
                     VPAAPQQALEAKRDAEGQGPATTNPCQ"
     gene            1992..3098
                     /locus_tag="VGD38_06540"
     CDS             1992..3098
                     /locus_tag="VGD38_06540"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY0727711.1"
                     /translation="MIDWLNVRKQFPVTDNTAYLNTAAAGPLAESTANAGAAYYEQMM
                     NDGDAHWDEWLARREEIRAQVARFINAEPDEIGFTTNTSSGMNVIIDALEKHGEVISC
                     DLEFPVSTIPWMHRRIPVHLVKSVEGVVRPDHISAAMNTRTGIISMSYVQFSNGFRSN
                     LEDLGDIKGQHAFVVNASQAAGVFEIDVKRMKIDALCTTGHKWMRSGYGSGFVYLSRE
                     LQAASHPRAIGWLSVQDPYDMRNNEIHLRHTLSARSEMGCPHFAGIFALGASIEMMQA
                     IGPANIEARALELNRKLTSRLEEAGSRVLSPLSDEAYRSAETLVAADNPAETVSKLAY
                     AHVSVTEKPQGFRVSTDFFNNEDDIENLIDALIS"
     gene            complement(3088..4032)
                     /locus_tag="VGD38_06545"
     CDS             complement(3088..4032)
                     /locus_tag="VGD38_06545"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEY0727712.1"
                     /translation="MEIRQLRAFVAIAETGTFTAGALRVHVTQAAISMQIRQLESEIG
                     ARVFVRAPRHVILTEAGEQLLRRARHILREHDAALDEIAELAGAERGRLRIGSASAMV
                     LTEQLPAILKELRKQHPAAEISVTSGTSEVLVDQILAGEVDIAFVSLPVDVRGIKTER
                     LSEDQLVAIASPRHRLAKQRTIDAYTLAGERLILGERGGNTRRLIDQFFAQAGVTLRV
                     AMELSRQQAIKRMVEEDMGVGIVPLQSVKEEVEKGRLIRWWIEGAQINWELGIAQLSN
                     GYDSPIMQKFVSLAHRNFASDGANDAAKKAKPKPKAKK"
     gene            4225..5151
                     /locus_tag="VGD38_06550"
     CDS             4225..5151
                     /locus_tag="VGD38_06550"
                     /inference="COORDINATES: protein motif:HMM:NF013986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BadF/BadG/BcrA/BcrD ATPase family protein"
                     /protein_id="HEY0727713.1"
                     /translation="MGVDGGGTKTEAVIMDAQQRVIGEGLAGPSNPLRVGIAGAAAAV
                     REAIDSACASAKLRRGDLIAAQIGLAGARRRELRERMRETLMPLGIGEIEVVTDANIA
                     LYGATDGAPGLVVIAGTGSICCGINARQKRFCAGGWGPIAGDEGGGAWLARRALRAVA
                     YASDGRGPKTLLTELASAYFHVTDPDDLTTAIYAPTITNERLAGFGRDVVNAAKRRDP
                     VALQIVADGGTELGLAAVAVIRHLQMERERFQVAYVGGVFRAAGDLMLDPLRAEVSKV
                     APRAYFEPPHFAPAVAAARMARERINHVALAV"
     gene            5158..5994
                     /gene="murQ"
                     /locus_tag="VGD38_06555"
     CDS             5158..5994
                     /gene="murQ"
                     /locus_tag="VGD38_06555"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: protein motif:HMM:NF003915.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016835 - carbon-oxygen lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009254 - peptidoglycan turnover [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HEY0727714.1"
                     /translation="MTTETSGALPITEQENPRSQHLSSQSSREIVELMNSEDATVAAA
                     VQRVLDDVAKAVDETVARLRAGGRLFYIGTGTSGRLGVLDASECPPTFGVSPELVQGV
                     IAGGYDACHRAVEASEDDGNAGGSDLQQRGLTGKDVVVGIAASGKTPYTVGAVTHARS
                     LGAFTVGLTVVPNSPITHAAELSIVPVVGPEVLTGSSRLKAGTAQKMVLNMISTATMV
                     GLGYVSGNRMSNLQARNIKLRDRAVRIVMTETGREHDAAVAALEASSWKILDAVQRLK
                     AS"
BASE COUNT         1339 a         1722 c         1739 g         1226 t
ORIGIN      
        1 ctacggcaca gcgaaaggcg gagagaaata cttcagtccc gagcgaattc agttgttgct
       61 gttcacttta ggcactgcaa tgttctatct caacgacgtt atgcaaaatc ggacctctgg
      121 tgttttaccg gatgtgtcca ccgaaacttt ggcgttgctc ggcggtagtc acgccgtcta
      181 cctgagtggc aaggcctaca tgatgctttt aaagagcacc ggcaaaggag aataacgatg
      241 ctgctactac tacttatgca agctgcgcaa accagcccca cccccgtgca gaccccttac
      301 gttcagccat gggtgggcgc cctggctgca tgggtagcac tagggttcct cggcttgatt
      361 ggcgtggcga ttctttacta cgtgttcacc ggcaggatta atctcagcgg gctgatcagc
      421 gaaccaaccg gcgatgcgag catgtcgcgt tttcaactgc tggtgttcac ttttgtgatc
      481 gccgccagct tgtttctgat tatcgcttct gctgcgccat cacctaagtt tcctgacgtg
      541 atcccctccg gaatactcat gctgctggga atcagcgcga gctcgtatct cgtcagtaaa
      601 ggtatccaac agacttcacc ggaaggacga gcaggcgcag gaccgcaagt taagatcgcc
      661 gctgagaaaa acacgacaac ctttggtggt gacacgattc aatttcaggc tgaagtgtct
      721 ggactggaag ataaaactgt tctttggacc attcttgacc cacccaattt cgggacgata
      781 gacgctgacg gattatatac gccccccgcc gacggagaac cggacacggt agtaatcaag
      841 gcagcgagca aggcgaaatt aaacgtaagt gatacggaaa gtattcgcgt cgagcgggcc
      901 ggctgaacag agagaggccc ccaatgaaaa aaacaacgca aacgaagcca acccccaggc
      961 aaacgttggg tcgcggagct atggccgcga cgatgattcc tctcgcgctt tcgttactgc
     1021 acccggcagt ggagcggcgc actcggactc aacctaccga agaagcgcga attgacagac
     1081 cggcgcccgg ccctcgccct ggaccaactg ccatcaaacc gggcgacagt gttcacctta
     1141 cactcggcaa tccgagcgat gcgacagacg atcccggaaa cgagaacaac ttcttgatgg
     1201 ttaaggacca gtatgtcctc tcctataaca acacgaatgg cggcccgaat tgggttacgt
     1261 ggcatttgaa agcgtcggac atcggcaccg aagcaagagg tgacttccgt actgataaca
     1321 cgctgccgcc ggatttcaag atgattacca aggatgacta caccggaacc aagtttgatc
     1381 gtggccacgt ttgcaattcc aaggatcgga ccgacacacg cgaaaacaac gacgccactt
     1441 tcttcatgac aaacatcctg ccgcaggctc ccgacaacaa tcagggacca tggcggatcc
     1501 tggaagattt tgaacgctca ttggcccaac agggaaacga gctttacatc acagccggcg
     1561 cattcggcac cggtgggata gggggaaaag gcccggccga cagtatcaac gagggcgaaa
     1621 tcaatgtccc aaagatattc tggaaagtca ttgtcgtgtt gccagacggc aacgacgatc
     1681 tgaaacgcat cgatgcgaat acgcgagtga ttgcggtctg catgccgaat aagcagggca
     1741 tacgcaacac gccatggcaa actttcgtga ccacggtaaa aaatgtggaa accgccgccg
     1801 gagtggattt actttcgctg gttccggccg caccccagca ggctctcgag gcaaagcgtg
     1861 acgcggaagg acaaggtccg gcaactacta acccttgtca gtagcgcagt cgatcaccac
     1921 accaaaccgc gacgttcttc acacttcgtc agtcgctcga actccgttcg caaagcagat
     1981 acactctggc aatgatcgac tggctcaacg tccgtaaaca gtttcccgtc acagacaaca
     2041 ctgcatacct aaacaccgcc gcggcagggc cgctcgcgga atcgactgct aacgcgggcg
     2101 ccgcttatta cgagcagatg atgaacgatg gcgacgcgca ttgggatgag tggctcgcaa
     2161 ggcgtgagga gatcagggcg caggtcgcgc ggtttatcaa tgccgagcct gatgagattg
     2221 gatttacgac gaatacgtcg agcgggatga acgtcatcat cgatgcgctc gagaaacacg
     2281 gcgaggtgat ctcgtgcgat ctcgagtttc cggtgtcgac gattccgtgg atgcaccgcc
     2341 gcattcccgt tcatctcgtg aagtccgtag agggtgttgt aaggccggat cacatcagcg
     2401 ccgcgatgaa cacgcgcacg ggaattatct cgatgagcta cgtgcagttt tcaaacggat
     2461 ttcgttcgaa tctcgaagat ctgggagaca tcaaagggca gcatgcgttt gtggtgaatg
     2521 cgagtcaggc ggcgggcgtg ttcgagattg acgtgaaacg aatgaagatc gacgcgctgt
     2581 gtacgacggg tcataaatgg atgcgttcgg gttacggctc ggggttcgtc tacctgagcc
     2641 gcgagctgca agcggcttca catccgcgtg cgattggttg gctcagcgtt caggacccgt
     2701 atgacatgcg aaacaatgag attcatttgc gtcatacact ttcggcgcga agcgaaatgg
     2761 gttgtccgca cttcgccggc atcttcgcgc tcggcgcctc gatcgagatg atgcaggcga
     2821 ttggaccagc gaacatcgaa gcacgcgcgc tggaactcaa tcgcaaactg acctcgcgtt
     2881 tggaggaagc cggttcgaga gtgttgtcgc cgctgagcga cgaagcatac cggtcagcgg
     2941 aaacactcgt ggccgccgac aatcctgccg agacggttag taaactcgct tatgcgcacg
     3001 tcagcgttac cgaaaagccg cagggattcc gagtgtcgac agacttcttc aacaacgaag
     3061 acgacatcga gaacctgatc gacgcgctta tttcttagct ttcggctttg gcttcgcttt
     3121 cttcgcggca tcgttcgcgc cgtcgctcgc gaagttccgg tgggccagcg agacgaactt
     3181 ctgcatgatg ggtgaatcgt aaccgttgct caactgcgcg attcccaact cccaattgat
     3241 ctgcgcgcct tcgatccacc agcggatcag ccgtcccttt tcgacttcct ctttaacgga
     3301 ttgcagcggc acgatcccga cgcccatgtc ttcttcaacc atgcgcttga tcgcttgctg
     3361 ccggctcaac tccatcgcga cccgcagcgt cacaccagcc tgcgcgaaaa actgatcgat
     3421 caaacggcgc gtgttgccgc cgcgttcgcc gagtatcaga cgttcacccg cgagcgtgta
     3481 agcatcgatc gtgcgttgtt tcgcgagccg gtgacgcggc gaagcgatcg ccacgagttg
     3541 atcttcgctc aagcgttcag tcttgatgcc gcgcacgtca accggaagcg aaacaaacgc
     3601 gatgtcgacc tcgcccgcga gaatttgatc cacgagcacc tcgctggtgc ctgaagttac
     3661 ggatatttcc gcagccggat gctgtttgcg caactctttc agaatcgcag gcaactgttc
     3721 ggtgagcacc atcgccgagg cactgccgat ccgtaatcgt cctcgttcgg cgcccgcaag
     3781 ttccgcgatc tcatccagcg ccgcgtcgtg ctcgcgcagg atgtgtcgcg cgcgccgcaa
     3841 cagttgttcg cccgcttcag tcaaaatcac gtgacgcggc gcgcggacaa acacgcgcgc
     3901 tccgatttca gactccaatt gcctgatctg catgctgatc gcggcctgcg tcacgtgcac
     3961 ccgcaacgca cccgccgtaa aggtcccggt ctccgcaatg gctacaaaag ccctcaattg
     4021 tcgaatttcc acagcagact ccacgtatca cgatgaatta tcggaataat aaaatctttt
     4081 agtttggatt ataaatcact ggctcctaaa atgctggaaa atgtttccaa tggtttctgg
     4141 cccagccgag ccccgaatgt gagcacagag cgacgcacag cagatctttc tccagccaga
     4201 cgcttacaca cgcaaaattc ggtcgtgggt gtcgacggcg gcggcacgaa aaccgaagcc
     4261 gtgatcatgg acgcccaaca acgggtgatc ggcgaaggtc tcgctggtcc atcgaatccg
     4321 ttgcgtgtgg gaatcgccgg tgccgcggcc gccgtgcgcg aagcgatcga tagcgcgtgt
     4381 gcgtctgcaa aactgcgccg gggcgacctc atcgcggcac aaataggctt ggcgggcgcg
     4441 cggcggcgcg agttgcgcga acgcatgcgc gagacgctca tgccgctcgg tatcggcgag
     4501 atcgaagtcg tcactgacgc aaacatcgcg ctttacggcg cgactgacgg tgcgcccgga
     4561 ctcgtcgtga tcgccggaac cggatcgatc tgctgcggca tcaatgcacg tcaaaaacgt
     4621 ttctgcgccg gtggttgggg accgattgct ggtgatgagg gcggcggcgc atggctcgcg
     4681 cgccgtgctt tgcgcgcggt tgcgtacgcc tcggacggcc gtggtccaaa aacgcttttg
     4741 actgaactgg cctcggccta ctttcacgtc accgatcctg acgacctgac aaccgcgatc
     4801 tatgcaccca cgatcacaaa cgaacggctc gccggttttg gccgcgacgt tgtcaacgct
     4861 gcgaagcgga gagatccggt cgcgttgcag atcgtggctg acggcggcac cgagcttgga
     4921 ctcgcggcag ttgcggtgat tcgtcacttg cagatggaac gcgagcgttt tcaggtcgcg
     4981 tacgtcggcg gtgtgtttcg cgcagccggc gatctgatgc tcgacccgct ccgcgccgag
     5041 gtgagcaagg tcgcgccgag agcatatttc gagccgccgc acttcgctcc ggcggttgcg
     5101 gcagctagaa tggcgcgtga acgcatcaat catgttgctc tcgcagtttg atcccagatg
     5161 accactgaaa ctagcggcgc gcttccgatc accgaacaag aaaatccgcg ttcacagcat
     5221 ctaagttctc aatcctcgcg cgagatagtt gagttgatga actcggagga tgcgaccgta
     5281 gctgcggctg tgcagcgcgt gttggacgac gtagcgaaag cagttgatga aactgtcgca
     5341 cggttgcgcg ccggtggaag gcttttttat atcggcacgg gcacgtcggg gagattgggc
     5401 gtgctcgacg catcggagtg tccgccgacg tttggcgtgt cgcccgagtt ggtccagggt
     5461 gtgattgccg gcggttacga cgcgtgtcat cgcgcggtcg aagcgtcgga agacgatggg
     5521 aacgcgggcg gcagtgattt gcagcaacgc ggcctgaccg gcaaagacgt cgttgtcggc
     5581 atcgcggctt cgggaaagac gccttacaca gttggcgccg tgactcacgc gcgttcgctc
     5641 ggcgcgttca cggtcggatt aacggtcgtg ccgaattccc cgattacgca cgcggctgag
     5701 ttgagcatcg ttcccgtcgt tggaccagaa gtgttgaccg gctcgagccg tctcaaagcc
     5761 ggaacagcgc agaagatggt cctcaacatg atctcgacgg cgacgatggt tggactcgga
     5821 tacgtcagcg gcaatcgcat gtccaacttg caggcgcgca acatcaaact gcgcgaccgc
     5881 gccgtgcgca tcgtcatgac tgagacagga cgcgagcacg acgccgcagt agctgctctc
     5941 gaagcttcaa gttggaagat tttagacgcc gtgcagcggc tgaaagcttc atagatgaaa
     6001 gctctcgatc tcatcatcat cttcgg
//
LOCUS       DASWTX010000428         1784 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_397792, whole genome shotgun sequence.
ACCESSION   DASWTX010000428 DASWTX010000000
VERSION     DASWTX010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1784
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397792"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..359)
                     /locus_tag="VGD38_06560"
     CDS             complement(<1..359)
                     /locus_tag="VGD38_06560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727715.1"
                     /translation="MLAVLAAYLIAAIHSILAFMNKRRSVQRVAEYSTVIGFILHTAA
                     LGADWVIDGHYPLFSLREALSFLAWALVPVYAAVLYRYRAQAVGAFTMPLISVLTFIS
                     LLITPGPADAPASFSATR"
     gene            485..1741
                     /locus_tag="VGD38_06565"
     CDS             485..1741
                     /locus_tag="VGD38_06565"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0727716.1"
                     /translation="MLLVLGVTLPLSLAQDPPQDVETIKIDTNLVTVPVIATDANGVY
                     VADLKQEEFVLTEDGVAHQIAFFGKVSLPFYVVLMLDTSSSTQDKLRVIQQAALAFVQ
                     QLQPADRVKVISFDDKVRDLNEFTSNRKTLETAIYSTKSSEGTKVYDAFEMALDTVRR
                     IQGRKAIVIFSDGMDWHSDKATYNSNVRYLDEEGVIVYPIRYDTRATTERLAREQAGE
                     TLPTMSVIRQAPPSGTTAPTFPGGDPIPTTGSKPKTGPLGLPSADEILRRRREEEQRR
                     RTGDQYPPGELPEPPQRRPEEGVPRVPGSRPAPPGTTTTTSTSRRSADDSIGRMLDMA
                     YSTADKYLETLAEKSGGRLLRADTIASLPDAFSQIAAELRTQYLLGYYPLNKDRDDRY
                     RKIKVTTARKNVILRSRPGYLATAAK"
BASE COUNT          405 a          482 c          554 g          343 t
ORIGIN      
        1 cgtgtcgctg agaatgatgc cggcgcgtcg gctggtccag gcgtgatcag cagcgagata
       61 aacgtcagca ccgagatcaa cggcatcgtg aacgcgccga cggcttgcgc gcgatagcgg
      121 tacagtacgg ctgcgtacac cggcaccagc gcccacgcca aaaacgagag cgcttcgcgc
      181 aatgagaaca atggatagtg accgtcgatt acccagtcag cgccgagcgc ggcggtgtgg
      241 agtatgaaac cgattacggt tgaatattcg gcgacacgct gcaccgaccg gcgtttgttc
      301 atgaacgcca ggatcgaatg aatggcagcg atgagatacg ccgctaaaac tgcgagcaaa
      361 agggatcgca ttggggaact agcacagagt tggattttat gctctagtca gatcagaggg
      421 caaacgttat gcttaccccg aacatctagg gactcaaatg ccttccttca aacgcctact
      481 ttctatgctt ctggttctcg gcgtgacttt gcctttatct ctggctcagg acccgccgca
      541 agatgtcgaa accatcaaga tcgacaccaa tctggttacg gtacccgtga ttgcgacgga
      601 tgccaacggc gtttacgtcg ccgacctgaa gcaggaagag tttgtgctca cggaagacgg
      661 tgtggcgcac cagatcgcgt ttttcggaaa agtgtcgctg ccgttttatg tcgtgttgat
      721 gctggatacg agctcgagca cgcaggacaa gttgcgggtg attcagcagg cggcgctggc
      781 gtttgtgcag cagttgcagc cggcggatcg cgtgaaagtg atctcgtttg acgataaggt
      841 gcgcgacttg aacgagttca ccagtaatcg aaagactttg gagacggcga tctacagtac
      901 gaagtcgagt gagggaacga aggtttatga cgcgtttgaa atggcgttgg atacggttcg
      961 ccgcattcag ggacgcaagg cgatcgtgat cttcagcgac gggatggatt ggcacagcga
     1021 taaggcgacg tacaacagca acgtgcgtta tctcgacgaa gagggcgtga ttgtttatcc
     1081 gattcgttac gacacgcgcg cgacgaccga acgcctggcg cgcgagcaag cgggtgagac
     1141 gttgccgacg atgagtgtga ttcggcaagc gccgccgagt ggcacgacgg cgccgacgtt
     1201 tccaggtggc gatccaatac cgactaccgg aagtaaaccg aagactggtc cgttaggatt
     1261 gccgtcggcg gacgagattt tgcgccggcg tcgtgaggaa gaacagcgcc gccgaactgg
     1321 ggatcagtat cctccgggag agcttccgga gccgccgcaa cgccgtcctg aagagggtgt
     1381 gccgagggtg cccggatcgc gccctgcgcc tccgggaact acgacaacca cgagcacctc
     1441 gcgccgctcg gcggatgact cgatcgggcg aatgttagac atggcctact cgacggcgga
     1501 taagtacctg gagacgttgg cggagaagtc aggcggaagg ctgttgcgcg cggacacgat
     1561 cgcgtcgttg ccggacgcgt tctcgcagat cgcagcggag cttcgcacgc agtacctgct
     1621 tggttactat cccttgaaca aggaccgcga cgatcgttat cgcaagatca aagtgacgac
     1681 cgcacgcaag aacgtcatcc tccgctcccg ccccggctac ctcgccaccg ccgcaaaata
     1741 ggtcctataa gtcctataag acctatactt gctgcgacgc cgcg
//
LOCUS       DASWTX010000429         5858 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_375802, whole genome shotgun sequence.
ACCESSION   DASWTX010000429 DASWTX010000000
VERSION     DASWTX010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5858)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5858
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_375802"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1627
                     /locus_tag="VGD38_06570"
     CDS             <1..1627
                     /locus_tag="VGD38_06570"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HEY0727717.1"
                     /translation="ARARALAELLRDTQSSFARGVNRSLATRERELRQTISAKMNLRV
                     QLLVQKLQPDANTDNLQSQLNQLEASLTPLQREHAAVKTRLRKVNPLFDQVTEPTAYT
                     LEQIQHDVIDDDQTVLLEFILGEQVSYAWAVTRTGIKTYELPKQQTIAEAAEKVYAEA
                     SEEPNDERTQRLNEATERLAQLVLSPLADELKAQRLIVVADGPLHYIPFQLLPAPNGT
                     REPLIVNHEIVNAPSASILGRLRQENRQRGPSTKLLAAFGDPVFPANYAEFKSPGAGD
                     LVASAKANELEPWRRIWRDVSRTPDSPTPETLQPLTYSKFELQRLKDLGGPAAFVARG
                     FEASRESLGRLKLSDFSVLHFATHGLLDPEHPEFSGVVLSMVNTSGEPQNGFITIPDV
                     YALKAPVDLVVLSACHTGLGKKVRGEGLIGLTSGFMHAGASSVAATLWKADDQATAKL
                     MEYFYANMLEKNMRPADALRAAQNTMRTTPPWQSPHFWAAFTLQGEYRQPIRIPQPTG
                     TPLKVQHAVGASLLLLLLAGIGWGYWRRRVPAN"
     gene            complement(1635..2324)
                     /locus_tag="VGD38_06575"
     CDS             complement(1635..2324)
                     /locus_tag="VGD38_06575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727718.1"
                     /translation="MRLLSDAAFIEEFDIVVDEIAAAYVAGEFTGEEKEQVEKYFLRS
                     PERRQKVKFISEMLRQVSAERGAPVAVVTKPSFLDKIRAFFGGQSLLAATTTFATLVL
                     VAALGVWLLFGGSSTPAYASLELNLSNASRSTGSEITKVALTRNIDELRVKLNLPTRT
                     PPPKSYRADLRGENISLPRLPIVEQNAQSLTVVIPADDLTRGTYAIELSAVNENGAEE
                     AIRGAYLFAVE"
     gene            complement(2421..2996)
                     /locus_tag="VGD38_06580"
     CDS             complement(2421..2996)
                     /locus_tag="VGD38_06580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727719.1"
                     /translation="MTLTPDSFNALLEWLDPDRDKAGQLYQTIHAGLIRMFVSKGLAD
                     AEHYADETVDRVVKRLPEIRGEYVGQPVRYFIGVARNVLREALRPREVPTEQPPEFVS
                     LREVNSELAACLSMCLKTLAREKLELIHDYHVYEGHQKIVSHREMAAELAISVGALRT
                     RAHHVRAALEECVNKCMEDRGNKSPSRDHNR"
     gene            3200..4414
                     /locus_tag="VGD38_06585"
     CDS             3200..4414
                     /locus_tag="VGD38_06585"
                     /inference="COORDINATES: protein motif:HMM:NF012885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LeuA family protein"
                     /protein_id="HEY0727720.1"
                     /translation="MTIDELVYDWNTIDPSLSPPNRHIGIDDETLRDGLQSPSVCEPQ
                     VEQKLELLHLMEALGIDTADIGLPGAGGTHAAGVERLAREIAEQKLKIRPNCAARTHR
                     NDIVPIAEISQRVGIPIEACTFIGSSSVRFFAEDWTLDQLLKMTEEAVSFAVSQGLPV
                     MYVTEDTTRAKPETIRALYTTAIQAGAKAVCVCDTVGHSTPDGARAVIQFVKGIIEEQ
                     GGNIRLDWHGHQDRGLGVINSLAAIQGGADQVHGSALGIGERVGNTPLDQLLVNLKLL
                     GWISNDLSRLGEYCETAARICGWTVPVNYPVFGRDAFRTATGVHAAAVIKSYRKGDQR
                     LADIVYSGVPAGEFGLEQVIEIGPMSGKSNVIYWLEKRGIEPSETLVNRIYDRAKAAH
                     GVLEEHEILELV"
     gene            4418..5647
                     /locus_tag="VGD38_06590"
     CDS             4418..5647
                     /locus_tag="VGD38_06590"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY0727721.1"
                     /translation="MVSSLKTAPAQTIRHLVTAPEVEQALRFFETNADAITEEQIRIC
                     SIPATPFAEEERAEYLAARFRELGLSDVSIDEVGNSIGLYKGSSSAPLIVVSAHLDTV
                     FPAGTDFTVRREGHRLLAPGIADDGCGLIALIAIVQAMRDANIQTGGSILFVGTVGEE
                     GEGNLRGVRHLLTRGSWSKRKINAFLSFDGPGVDRITNRALGSRRYRVEFTGPGGHSW
                     GDFGVPNPVHALGRAISRLNAYPVPRDPRTTFNVGSVSGGTSVNAIPERAAMEVDLRS
                     AGEAELKRLDAFFRRAMKEAAEEENARRRPGDSPLKLQMDLIGERPSGETPADSSLVK
                     LAIETTKLLGVEPRLDQSSTDSNLPISLGIPAITLGAGGTSGASHTLAEWYDPRDRDK
                     GLKRGLLVILGLAQLTS"
     gene            complement(5644..>5858)
                     /locus_tag="VGD38_06595"
     CDS             complement(5644..>5858)
                     /locus_tag="VGD38_06595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727722.1"
                     /translation="AKAAETATAVAPAPEAVKPGAKRVVVTVTYDETGRVTQASGGDA
                     NALRIARQKRFPAGKAGSATISIPIN"
BASE COUNT         1259 a         1685 c         1687 g         1227 t
ORIGIN      
        1 cgcacgggcg cgcgcgctgg cggagttact gcgagacacg caaagcagct tcgcgcgcgg
       61 tgtgaatcga tcgctggcaa cgcgcgaaag agagctgcgg caaaccatca gcgccaagat
      121 gaatttgcga gtacagttgc tggtccaaaa acttcagccc gacgcaaaca ctgacaatct
      181 tcagtcgcag ttgaaccagc tcgaagcgtc gttgacgccg ctccaacgtg agcacgcagc
      241 agtaaaaacg cggctgcgga aagttaatcc actgttcgat caagtaactg aaccaaccgc
      301 ctacacgctc gaacaaattc agcacgacgt aatcgacgac gatcaaaccg tgctgctcga
      361 gttcattctg ggcgaacagg tgagctacgc gtgggccgta acgcgaaccg ggataaaaac
      421 ctatgaactg ccgaagcaac aaacgatcgc cgaggcggcg gaaaaggttt acgccgaagc
      481 atccgaggaa ccaaacgacg aacgtacgca gcgcctgaat gaagcaacgg aacgcttggc
      541 gcaactagtg ctgagcccgc tggctgatga attgaaagcc cagcgtctca tcgtcgtcgc
      601 ggacggcccg cttcattaca ttccgtttca attgttacct gctccaaacg gaacgcgcga
      661 accactgatc gtcaatcatg aaatcgtaaa cgcaccgtcg gcctcgattc tcggccggtt
      721 gcgccaggag aaccgccaac gcggcccgag cacgaagctc ctggcggcgt ttggcgatcc
      781 cgtgtttccg gcaaactacg cagagttcaa gagtccgggc gctggcgacc tggtcgcttc
      841 agccaaagcg aatgagctcg agccgtggcg tcgtatctgg cgtgatgttt cacggactcc
      901 ggatagccct acgcccgaaa ccctgcagcc gttgacctac agtaagttcg agttgcagcg
      961 gttgaaagat cttggcggcc cggcggcgtt cgtcgcgcgc ggtttcgaag cgtcacgaga
     1021 gtcgctgggc cgactcaagc tttcggattt ctcagtgctg catttcgcga ctcacggttt
     1081 actcgatccg gaacacccgg agttttcggg agtggtcctt tcgatggtta acacgtcggg
     1141 cgagccgcaa aatggattca tcacgatccc ggacgtttat gctttgaaag ctccggtcga
     1201 tctggtcgtg ttgagtgctt gccacacggg actcggcaag aaggttcgtg gcgagggttt
     1261 gatcggtttg accagcgggt ttatgcacgc cggcgcttcg agcgttgccg caacgctttg
     1321 gaaagccgat gaccaggcga cggcgaagtt gatggagtat ttctacgcga acatgctgga
     1381 gaagaacatg cggccggctg acgcgttgcg agcggctcag aatacgatgc gcactactcc
     1441 accgtggcaa tcaccacact tctgggcggc gtttactctc cagggtgaat accggcagcc
     1501 gatcagaatt ccacaaccca ccggcactcc gctgaaagtt caacatgcgg tcggagcgtc
     1561 gctgctgctc ttactcttag cgggaatcgg ctggggctac tggcggcgtc gcgttcctgc
     1621 aaactgaaaa cgttttattc aactgcaaac aagtaggcgc cgcggatcgc ttcctcggcg
     1681 ccgttttcgt tcacggcgct gagttcgatt gcataagttc cgcgagtgag atcgtcggcg
     1741 ggaatcacga ccgtgagcga ctgagcgttt tgttcgacga tcggaagccg tggcaatgaa
     1801 atgttctcgc cacgcaaatc agcgcgataa ctcttcggtg gtggtgttcg agtgggaaga
     1861 ttgagcttga cgcgaagctc gtcgatgttt cgtgttaaag cgactttcgt gatctcggag
     1921 ccggtactgc ggctcgcatt actgaggttc aactcgagcg atgcataagc aggcgttgag
     1981 gatccaccga acaacaacca gacgcccaga gccgcgacca gcaccaacgt cgcgaaagtt
     2041 gtcgtagcag ccaacaacga ttggccgccg aagaaagcgc ggatcttgtc taaaaaggat
     2101 ggcttcgtga caacggcgac cggtgcacct cgctccgccg aaacctgacg gagcatttcg
     2161 ctgatgaatt tcaccttctg ccggcgttcg ggcgaccgca ggaaatactt ctcgacctgc
     2221 tccttttcct cacctgtgaa ctcccccgcc acgtaagcag ccgcgatttc gtcgacaacg
     2281 atgtcgaatt cctcgataaa cgccgcatcc gacagcagac gcatttccaa ccgctcctcg
     2341 tcaggatcgg ccagctgccc cagcaggtat cgtttcagtt cacttttttg gtcttgagcg
     2401 atgatggctt tgcactcccc ctacctatta tggtcccgac tggggctttt gttcccccga
     2461 tcttccatac atttatttac acactcctcc agcgccgccc gcacgtggtg ggcgcgcgtg
     2521 cgcagagcgc ccacggaaat cgcgagttca gcggccattt cccggtgact cacgatcttc
     2581 tggtgccctt cgtagacgtg ataatcgtga attaattcga gtttctcccg cgcgagcgtc
     2641 ttcagacaca tcgataagca ggcagcgagt tcgctgttca cttcccgcag cgaaacgaac
     2701 tccggcggct gctcggtcgg cacctctctc ggccggagtg cttcgcgcag aacgttgcgg
     2761 gctactccga tgaaatagcg cacgggttgg ccgacgtatt cgcctcgaat ttcaggcagg
     2821 cgtttgacca cccggtccac ggtctcgtcg gcgtagtgct cggcatcggc gaggcccttc
     2881 gagacaaaca tcctgatcaa accggcgtga atcgtttggt acagttgccc cgctttatca
     2941 cggtcgggat ctagccattc cagtaatgca ttaaatgaat ccggcgtcag ggtcaactct
     3001 caatggtcct tggttttgcg cgaagagcgg taatgaagcg gcatgtacga gaacgaggaa
     3061 acgctagcgt agacgcgact caatagcaag ccattattgg gtttttcttt gttcccaccg
     3121 cggtctcttt gcagaatgtt gagcctcatt tgactttcaa atgtgccgtt gctgtaatcg
     3181 cttcctggag gctgtaagcg tgacaatcga cgaactagtt tacgattgga atacgatcga
     3241 cccgtccctt tccccgccca atcgtcacat cggaattgac gacgaaacac tgcgcgacgg
     3301 gctacagtca ccgtctgttt gcgaaccgca ggtcgaacaa aaactcgagc tcctgcacct
     3361 gatggaagcg ctcggcatcg acactgccga catcggcctg cccggcgcgg gcggcacaca
     3421 cgccgccgga gtcgaacgcc tcgctcgcga aatcgccgaa caaaaactca agatcagacc
     3481 aaactgcgcc gcgcgcacgc atcgtaacga catcgttccg atcgccgaga tctcgcagcg
     3541 cgtcggtatt ccaatcgagg cttgtacgtt tatcggatcg tcgtcggttc ggttctttgc
     3601 ggaagattgg acactcgatc agttgttgaa gatgactgaa gaggcggtgt ctttcgcggt
     3661 gtcgcagggt ttgccggtga tgtacgtcac tgaagacacg acccgcgcga aaccggaaac
     3721 gatccgtgcg ctgtacacga ccgcgatcca ggcgggcgcg aaagctgttt gcgtctgcga
     3781 cacggtcggg cattcaacac ccgacggcgc gcgcgcagtc attcagtttg taaaaggcat
     3841 catcgaagaa cagggcggaa acattcgtct cgactggcac ggacatcagg accgcggcct
     3901 gggtgtaatc aactcgctcg ccgcgatcca gggcggcgcg gatcaagtac acggctcggc
     3961 gttgggaatc ggtgaacgcg tcggcaacac gccgctcgat cagttgttgg tgaacctgaa
     4021 actgctcggt tggatttcca acgacctttc gcggctgggt gagtactgtg aaaccgcggc
     4081 gcgtatctgc ggttggaccg taccggtcaa ctatccggtg tttggccgcg acgcgtttcg
     4141 caccgcgacg ggcgtacacg cggctgcggt gatcaagagt tatcgcaaag gcgatcagcg
     4201 tctcgcggat atcgtttatt cgggtgtgcc cgcgggcgag tttggtctcg aacaggtcat
     4261 cgagatcggt ccgatgagtg gcaagtcaaa cgtgatctac tggctcgaga agcgcggcat
     4321 cgagcccagc gaaactctcg ttaatcgaat ttacgaccgg gcgaaagcag ctcatggcgt
     4381 gctcgaagag cacgagattc ttgaattggt gtgaaccgtg gtttcctcac tcaaaactgc
     4441 tcccgctcaa acgattcgac acctcgtcac agcaccagag gtcgaacagg cgttgcgttt
     4501 cttcgagacc aacgcagacg cgatcactga agaacagatt cgcatctgct cgattcccgc
     4561 aacgccgttc gccgaagaag agcgcgctga gtatctcgcc gcacgttttc gcgagctagg
     4621 tttgagcgac gtgtcgatcg atgaagtcgg taacagcatc ggactctaca agggtagttc
     4681 gtcagcgccg ctaatcgtcg tcagcgcaca cctcgataca gtttttccag ccggaactga
     4741 tttcaccgtg cgtcgcgaag gtcatcgttt gctggcgccg ggaattgccg atgacggttg
     4801 cggactgatc gctttgatcg cgatcgttca ggcaatgcgc gatgcgaaca tccagaccgg
     4861 cggctcgatt ttgtttgtcg gcactgtcgg cgaagaaggc gaaggcaacc tgcgcggtgt
     4921 gcgccatctg ctgacgcgcg ggagttggtc caaacgaaag atcaacgcgt ttctgagttt
     4981 tgatggacca ggtgtcgatc ggataacaaa tcgcgcgctc ggctcgcggc gttatcgcgt
     5041 cgagttcact ggaccaggcg gtcactcgtg gggcgacttc ggcgtgccga atccggttca
     5101 cgcactcggc cgtgcgatct cgcggctcaa cgcttatccg gtgccgagag atccgcgaac
     5161 gactttcaat gttggcagtg tttcaggtgg aacgagtgtg aacgcgattc ccgagcgtgc
     5221 ggcaatggaa gtcgatctgc gttcagccgg ggaagcggag ctcaaacgtc tcgacgcgtt
     5281 tttccgccgc gcgatgaaag aagcggccga agaagaaaac gcgcggcggc ggccgggaga
     5341 ttcgccgctc aagttgcaga tggatttgat cggcgaaaga ccgtcaggtg aaacacctgc
     5401 cgattcatca ctcgtgaaac tcgcgatcga aactacgaaa ctgttgggcg tcgaaccgcg
     5461 cctcgatcag tcgtcaacgg attccaacct gccgatctcg ctgggcattc cggcgatcac
     5521 actcggagca ggaggaactt caggagcctc acacactctc gccgaatggt acgatccgcg
     5581 cgatcgcgac aagggactca aacgtggatt gctcgtgatc ctcggactcg cccagttaac
     5641 tagttaatta atcggaatcg aaatcgtcgc cgagccggct ttgcctgcgg ggaagcgttt
     5701 ctgtcgcgcg attctcaacg cgttcgcatc gccgcctgaa gcctgcgtca ctcttcccgt
     5761 ttcatcataa gtaaccgtaa ccaccacgcg cttcgcaccc ggcttcacag cctcaggagc
     5821 aggcgcgact gcggtcgccg tctcagcagc tttggcct
//
LOCUS       DASWTX010000430         3272 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_28932, whole genome shotgun sequence.
ACCESSION   DASWTX010000430 DASWTX010000000
VERSION     DASWTX010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3272)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3272)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3272
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28932"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..848)
                     /locus_tag="VGD38_06600"
     CDS             complement(<1..848)
                     /locus_tag="VGD38_06600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727723.1"
                     /translation="MRRFGSITVLCAFALFASAFTLSAQTPAPSPTSDPAITALSVMG
                     VVSELKTDTRQVIVTTAAGNQVTVTLSDRTVFMRIPPGEKTKDKFIKISPTDFGVGDS
                     VFARGRMTEDRKSMPALEFYVMSKGDIAQQREREREEWRKRGLAGTISAVNADTKEIT
                     IDSRSAEGPKPVVITTTAETKFRRYAPDSVRFSDAKPSAIGDLKVGDQLRALGTKSAD
                     GAKFSADEIVTGSFQTIGGAITEVNAEKQEIKINDVQSKQAVTIVVSKDSMMRRLTPE
                     LLSALIP"
     gene            complement(932..2356)
                     /locus_tag="VGD38_06605"
     CDS             complement(932..2356)
                     /locus_tag="VGD38_06605"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY0727724.1"
                     /translation="MTKLLLALLLTTFVSGEEWSQFRGPNGTGVSVTKGLPETFGPSK
                     NVVWKTELPAGHSSPVLTSDRIFVTAHTKEKLFVMGLDRQSGKILWQKEVPRVREGRL
                     QNVNGPASATPVTDGSNVYVFFQDFGLLSYDRDGKERWKLQLGPFNIFYGFGASPILV
                     DDKVILPVDQDHPASYMIAVDKNTGKVRWKIERPIVISGYSTPIIYQPKQGPKQIVVP
                     ESFQLSAYSVQDGKRVWWVRGLACEMKSIASQDGEYLYINGWGFPQNQPGQQVPTVSF
                     EEGLKRYDKDNDRQITKAEATGNEKMDKILNAAFEAFDMNRDDKLDAKDWEVFRAMMA
                     SENGLLAIKMGGTGDQTATAIRWRYQKPVPQVPSTLLYKGVLYMINDSGILLSFDPAT
                     GNVLKQGRLHGAIDKYFSSPVAADDKVFLIGQGGQVSVLKAAGEWEVLAVNELDDECF
                     ATPAIADGRIYIRTRSALYAFGKA"
     gene            2391..3146
                     /locus_tag="VGD38_06610"
     CDS             2391..3146
                     /locus_tag="VGD38_06610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727725.1"
                     /translation="MKTILFLLLLPAFVPVAAQRPQAPQRQVLYDFRNERTNPPSKIS
                     PTTQRDVLSKVFRRYLTNVNRCQSNFDAGENFLAGARRAGQIVPDIAEAVDGSFTAAG
                     QKETAYLIYVNECNASHADNFGSKRLAIFSGPRLVADIDLDFKSSVVAKTDLDLDGIN
                     ELLMTSGDMAQGVVIEIAALLSFQNGRMRVLQNFDTVMNDDCASLRPTAATKAAVLSY
                     ANATLGQIPKIRVDYYATGCNRARRWRAIKGPI"
BASE COUNT          657 a          981 c          880 g          754 t
ORIGIN      
        1 gggatcaacg cactcaacag ctccggcgtg agccgccgca tcatcgagtc tttactcacg
       61 acaatcgtca cggcctgttt actctgcacg tcgttgatct tgatctcctg cttttcggcg
      121 ttcacttccg taatcgcgcc gccgatcgtc tgaaacgaac ccgtcacgat ctcatcggca
      181 ctaaacttcg cgccgtccgc gctctttgtt ccgagcgcgc gcagttgatc gccaaccttc
      241 agatcgccga tcgcgctcgg cttggcgtcg ctgaagcgaa ccgaatcggg cgcgtaacgg
      301 cgaaacttcg tctcggccgt tgtcgtgatc acaaccggct tcgggccttc cgcactgcgc
      361 gaatcgatcg tgatctcttt cgtgtctgcg ttgacggcgc tgatcgttcc ggccagccca
      421 cgcttgcgcc actcctcgcg ctcgcgttcg cgttgctgcg cgatgtcgcc tttgctcatc
      481 acgtaaaact cgagcgccgg catgctcttg cgatcttcag tcattcgccc gcgcgcaaag
      541 acactgtcgc cgacgccgaa atccgtcggg ctgatcttga tgaacttgtc tttggttttt
      601 tcgccgggcg gaatgcgcat gaagaccgtc cggtcgctga gtgtgaccgt gacctggttg
      661 ccggccgcgg tcgtgacgat tacctggcgc gtgtctgtct ttagctcaga caccactccc
      721 atcacgctca gtgctgtgat cgcgggatca gacgtcgggg aaggagcggg tgtttgtgct
      781 gacagtgtga acgcgcttgc gaacagagca aacgcgcaca gcacggtgat gctgccgaac
      841 cttctcatgc ggagtaaaca ccgctcggct agcgctttgt gacaggaatc tttggaatag
      901 gtcctatagg acttatagga cctattgagt tctaggcttt tccgaaagcg taaagcgcgc
      961 tgcgcgtccg gatatagatg cggccgtccg caatcgcggg cgtcgcgaag cattcgtcgt
     1021 cgagttcgtt aaccgccagc acttcccatt cgcccgcggc cttcaacact gaaacctgtc
     1081 cgccctggcc gatcaaaaac accttgtcgt cagccgctac aggcgacgaa aagtatttgt
     1141 cgatcgcacc gtgcaggcgt ccctgcttca acacgtttcc ggttgccgga tcgaacgaaa
     1201 gcaggatgcc gctgtcgttg atcatgtaga gcacgccttt gtagagcaac gtcgacggca
     1261 cttgcggcac gggcttctgg taacgccacc tgatcgcggt cgccgtttga tcgccggtgc
     1321 cgcccatctt gatcgccagc agtccattct ccgacgccat catcgcgcga aacacttccc
     1381 aatcctttgc gtccagcttg tcgtcgcgat tcatgtcaaa cgcttcgaac gcggcgttca
     1441 ggatcttgtc catcttctcg ttgccggttg cttccgcttt tgtgatctgg cgatcgttgt
     1501 ccttgtcgta tctcttgaga ccttcttcaa acgaaactgt cggcacctgc tggccgggtt
     1561 ggttctgcgg aaagccccaa ccgttgatgt agagatactc gccatcctgg ctcgcgattg
     1621 atttcatctc gcacgccaac ccgcgcaccc accacactcg cttgccgtcc tggaccgagt
     1681 aagccgagag ttgaaacgat tcgggaacga cgatctgttt tggtccctgt ttcggctgat
     1741 aaatgatcgg cgtcgaataa ccggagatca cgatcggccg ctcgattttc caacgaacct
     1801 ttcccgtatt cttgtcgaca gcgatcatgt acgacgccgg gtggtcctga tcgacaggca
     1861 ggatcacttt gtcgtcgacg agaatcggcg aagcgccaaa gccgtagaag atgttgaatg
     1921 gaccaagctg gagtttccaa cgctccttgc cgtcgcggtc atacgagagc aggccgaagt
     1981 cctggaagaa cacgtagacg ttcgagccgt cggtgaccgg agtcgccgac gctggaccat
     2041 tcacgttctg taatcttcct tcacgcacgc gcggcacttc cttctgccaa agaatctttc
     2101 cgctctggcg atcgagtccc atcacgaaaa gtttttcctt ggtgtgcgcg gtcacaaaaa
     2161 tgcgatcgct tgtcagcacg ggagatgaat ggcccgccgg caactcagtt ttccagacga
     2221 cgtttttgga tggtccaaat gtttccggaa gacctttggt gacggaaacg ccggtgccgt
     2281 ttggtccacg aaactgcgac cattcttcac cggaaacaaa tgtagtcagg agtagagcga
     2341 gaagtaattt agtcatagcg gcgctgattc taacagtgta atctttggat atgaaaacaa
     2401 ttcttttcct cctgctgctg ccggcgttcg ttcccgtggc ggcgcaaagg cctcaggcgc
     2461 cgcagcgcca ggtcctctac gactttcgca acgaacgcac gaatccaccg tccaaaattt
     2521 cgcctaccac tcaacgcgat gtgctctcga aagtctttcg ccggtactta acgaatgtga
     2581 atcgctgtca gtccaacttc gatgccggcg agaatttttt ggcaggcgcg cgccgcgccg
     2641 gacagatcgt cccggacatc gccgaggcgg tagacggaag tttcacggcc gccgggcaga
     2701 aggaaaccgc gtacctgatc tacgttaacg agtgcaacgc atctcacgcc gacaacttcg
     2761 gctccaagcg cctcgcgatc ttctccggcc cacggctggt tgcagacatc gatctggatt
     2821 ttaaaagcag cgttgtagcg aaaacagatc tcgatctcga cgggataaac gagctgttga
     2881 tgacgagtgg cgatatggcc cagggcgtgg tgattgagat cgccgcgctg ttgagttttc
     2941 agaacggccg catgcgtgtg cttcagaatt tcgacacagt catgaacgac gactgcgcat
     3001 cgctacgccc aaccgccgcg acgaaagccg cggtgctttc gtacgcaaac gccacgctcg
     3061 gtcagatacc gaaaatcaga gtcgactatt acgcgaccgg ttgcaataga gcacggcggt
     3121 ggcgagcgat caaaggtcca atctaaagaa tctcaacccg ctgccgcggc ttcgatgtct
     3181 ttgatgatga tcttcttcat gcccatcatc gcctgcatca cccgctgcgc cttcgcggga
     3241 tcagcttccg accatgtgtt cagcaacacg tc
//
LOCUS       DASWTX010000431         2562 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_332542, whole genome shotgun sequence.
ACCESSION   DASWTX010000431 DASWTX010000000
VERSION     DASWTX010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2562
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332542"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            69..1871
                     /locus_tag="VGD38_06615"
     CDS             69..1871
                     /locus_tag="VGD38_06615"
                     /inference="COORDINATES: protein motif:HMM:NF014850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY0727726.1"
                     /translation="MKTFIFVVTLLASVLSAQAQQIGLIANTDGRKTIALDGDWQTIV
                     DPYESGYYDYRYQPSANGYFKNAKPKSPSDLIEYDFDKSETLKVPGDWNTQSDKLFFY
                     EGTIWYKKSFDYARTPNTRLFVYFGAANYRADVYLNGEKLGHHVGGFTPFNFEITKLV
                     RDTGNFLVVKVDNQRSRDAVPTLMTDWWNYGGLTRHVKLVETPATFVHDYFIQLQRGS
                     RNRIGGWVKLAGEKPAQQVTIRIPEANISRSFTTDENGFVAIDFAADLSLWSPENPKL
                     YDVVIEAQMDRVSDRIGFRSVETRGTEILLNGRPIFLRGVCLHEEAPLRGGRAYSRDD
                     ALKLLGWAKELGANFVRLAHYPHNEFMVREADRMGLMVWSEIPVYWTILWENPETLEN
                     ARNQLSEMIVRDKNRASVVIWSVANETPLSDARLAFLKNLVAHARSLDSTRLLSAAME
                     RHYINPTTQMIDDPLGEYLDVLGCNEYVGWYDGLPAKADRLEWKSNYNKPLIMSEFGA
                     DALYGHHGDASARWTEEYQEDLYKHQVAMLKRIPFLRGTAPWILTDFRSPRRPLPGIQ
                     DYWNRKGLISNRGEKKKAFYVMQQWYRELQEARQ"
     gene            1868..>2562
                     /locus_tag="VGD38_06620"
     CDS             1868..>2562
                     /locus_tag="VGD38_06620"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY0727727.1"
                     /translation="MTSQILSRRSFSKLVGASAAYAALRPALGTNASSRTSPVSTANV
                     VRLSSNENPYGPSPAALKAMTDGFGLAWRYPDEYADVLAEELARMHAVPSDQVLLGDG
                     SGEILKLCASAFTGRDKKIVIANPTFEAIARHAGVAGAEIVKIDLTTDYSHDLKKMLA
                     AATGAGLVYICNPNNPTASLTHKNEISDFLAKLSPTTMVLVDEAYHHYVESADYESVI
                     PLVKQYPNLIVART"
BASE COUNT          568 a          723 c          749 g          522 t
ORIGIN      
        1 aacgcgtatt ccaaccggct ttagggccga gacaaaagcg gctgcgtctg ccaaaatctg
       61 gtcctaatat gaaaacgttc atctttgtcg tgacactgct cgcgtctgtt ctctcggcgc
      121 aagcgcagca gatcggtctc atcgcaaaca ccgacggccg caagacaatc gcgctcgacg
      181 gcgattggca gacgatcgtc gatccgtatg agtcgggcta ttacgattac cgctaccaac
      241 cgagcgcgaa tggttatttc aaaaacgcga agcccaagag cccgagcgat ctgatcgaat
      301 atgacttcga caagtcggaa acgctgaagg taccgggcga ttggaacacg caatcagaca
      361 aactcttctt ctacgaaggc acgatctggt acaagaaatc gtttgactac gcgcgcacgc
      421 cgaacacgcg tctgtttgtg tacttcggcg cagccaatta ccgcgcggac gtttatctca
      481 acggcgaaaa gctgggccat cacgtcggcg ggttcacgcc gttcaatttc gaaatcacga
      541 agctcgttcg cgacacgggc aatttcctcg tggtgaaagt tgataaccaa cgctcgcgag
      601 acgctgtgcc aacgctgatg accgactggt ggaactacgg cggcctcact cgccacgtga
      661 agctcgtcga gacgccggcg acgtttgttc acgactattt cattcaactg caaagaggct
      721 cgcgcaatcg cattggcggt tgggtgaagc tggccggcga gaagcccgcg caacaggtaa
      781 cgatacgcat tcccgaggcg aatatcagca gatcgtttac cacggatgag aatggcttcg
      841 tcgcgatcga ttttgccgcg gacctttcgt tgtggtcgcc tgagaatccc aaactctacg
      901 acgtagttat tgaagcgcaa atggaccgtg tgagcgatcg catcggcttt cgcagtgttg
      961 aaacgcgagg cacggagatc ctgctcaacg ggcgtccgat atttctgcgc ggcgtgtgcc
     1021 tgcatgaaga agcgccgcta cgtggtgggc gcgcttacag ccgcgacgac gcgttgaagc
     1081 tgctcggttg ggccaaagag ctgggcgcga acttcgtgcg cctggcccac tatccgcata
     1141 acgagttcat ggttcgcgag gctgatcgga tgggcctcat ggtctggtcg gagattcccg
     1201 tttactggac catcctttgg gagaacccgg agacactcga aaacgcacgc aaccagttga
     1261 gcgagatgat cgtgcgcgac aagaaccgcg cgtcggtcgt gatctggtcg gtggcaaacg
     1321 agacgccttt gagcgacgcg cgcctcgcgt ttctcaagaa cctcgtcgcg cacgcgcgct
     1381 cgctcgattc gacgcgactg ctttcggcgg cgatggagcg tcactacatc aacccgacga
     1441 cgcagatgat cgacgatccg ctcggtgagt atctcgacgt gcttggttgt aacgaatacg
     1501 tcggctggta tgacggctta cccgccaaag cagatcgcct ggagtggaaa tcgaactaca
     1561 acaagccgct catcatgagt gaattcggcg cggacgcttt gtacggccac cacggcgacg
     1621 catcagcacg ctggaccgag gaataccagg aagatctcta caaacaccag gtcgccatgc
     1681 tcaaacgcat ccccttcctc cgcggcaccg cgccttggat attgacggac ttccgctccc
     1741 cccggcgccc ccttcccggc attcaggact actggaaccg caaaggtctg atctcgaatc
     1801 gcggcgagaa aaagaaggcg ttctacgtga tgcaacagtg gtatcgtgag ctacaggagg
     1861 ccagacaatg accagtcaaa tactttcccg tcgcagcttt tccaaactcg tcggcgccag
     1921 tgcagcttat gcggcactgc ggcccgccct cgggaccaat gcctcttcgc gaacgtcgcc
     1981 ggtttcaacg gcgaacgtcg ttcggctcag ttcgaatgag aatccgtatg gtccatcgcc
     2041 ggcggcgttg aaggcgatga cggatgggtt cggtctggcg tggcgttatc cggatgagta
     2101 tgcggatgtg ttagcggagg agttggcgag gatgcacgcc gtgccgtcgg accaggtact
     2161 gctgggcgat ggatcgggag agattctgaa gctgtgcgcg tctgcgttta ccggacgcga
     2221 taagaagatc gtgatcgcta atccgacttt cgaagcgatc gcgcggcatg cgggtgttgc
     2281 cggcgcggag atcgtgaaga tcgatctcac gacggattac agtcacgacc tgaagaagat
     2341 gcttgcggct gctaccggcg cggggcttgt ttacatctgc aatccaaaca atccaacggc
     2401 cagccttact cacaaaaacg agatctcaga ttttctggcg aagctttcgc ccacgacgat
     2461 ggtgttggtt gacgaggcgt atcatcacta cgtcgagagc gcggactacg agagcgtgat
     2521 cccgctcgtg aagcagtatc cgaacctgat tgtggctcgc ac
//
LOCUS       DASWTX010000432         2129 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_417106, whole genome shotgun sequence.
ACCESSION   DASWTX010000432 DASWTX010000000
VERSION     DASWTX010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2129
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417106"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            8..>2129
                     /locus_tag="VGD38_06625"
     CDS             8..>2129
                     /locus_tag="VGD38_06625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727728.1"
                     /translation="MAVAQIWASEAARVGGVGAFQEMRQAFHRADGWKNAAAVSFLYH
                     RREDFGNTDQKTINKVFNKLETNSLARYESIDGAPFTLSDLARALCFQTRNHYFDLYN
                     AVYDYVASYEDGAPVLVLDEGRYAHEPKLWSRYQQLLEIAFDSARENHPSREYFNALL
                     MESLYRAFDKRRSGENVKIGDILLLQRDEVSAVAATLLEPAKPEALAVTTVAEREGET
                     LQQTLIQLMKLASDKLTVPQPAPGQQNGGKIEVQPYTDRDAEKINQAIIRLLRLALAH
                     NAIRSVTPDFEARLRDNKAKPSSLADLEFAWTDNSCSNIRSVVREQHEQDLIKFWGEH
                     ETELDAFDAELAGLWTPLPVAGESLRLRTAIGELRTKAEVVGIGQGTISGPDAGALKV
                     NVGTRESREALWPRAILERIRAEDDADVIELFDRPATDPVLAKALQRRVEINVKIGAL
                     IRAIVRPRNTDYAIYLVIGPMPGTEVDLAAVKPLLPEKTSLFWYVVGREAPEFSTAIP
                     EGIKIYASPLTGVTQTRQGARKLMQDYVEIAFKQRFETIVTHLKAAEYKDAQLAQRAG
                     AELIGPIAFGSGVLEALSQPFLNVATQFLKQKRERFIAVGVAEWPDLVSNWSAATASK
                     RLADEIIEKGELAPEYRGVIEGALTECFSGPGKATSDGWVKTFLAATEDANAIWLMLM
                     KSLLRQFVRKKMDEAKITDQSLRSA"
BASE COUNT          519 a          528 c          633 g          449 t
ORIGIN      
        1 aaacgcgatg gcggttgccc agatctgggc cagcgaagct gcgagagttg ggggagtcgg
       61 cgcgtttcag gagatgcggc aagcgtttca tcgcgcggac ggttggaaaa atgcggcggc
      121 agtttctttt ctctatcacc ggcgtgaaga tttcggcaac acggatcaga aaacaatcaa
      181 caaggtcttc aacaagctgg agaccaattc cctcgcgcga tacgaaagca ttgatggggc
      241 gccgtttact ttgagcgatc tcgcgcgtgc attgtgcttt cagacgcgta atcactactt
      301 cgatctttac aatgccgtct acgactacgt tgcttcatac gaagacggcg cgccggtgct
      361 ggtgctcgat gaaggccgct atgcgcacga gccgaagctt tggtctcgtt atcaacagct
      421 tctcgagatc gccttcgaca gcgcgcgtga aaatcaccct tcgcgcgagt acttcaatgc
      481 gctgttgatg gaatcgttgt accgcgcctt tgacaaacga cgaagcggcg aaaatgtaaa
      541 gatcggcgac atactgcttc tacaacgcga cgaagtctca gccgtagcgg caacgttatt
      601 ggaaccagcg aagccggaag ctctcgcagt cacgacggtt gctgaacgcg aaggcgaaac
      661 tctccaacaa actctgattc agttgatgaa gcttgcttca gacaaactca ccgttccgca
      721 gcctgcaccc ggtcaacaga atggtggaaa aattgaagta caaccctata ccgatcgcga
      781 cgcggagaag atcaaccagg cgattatcag gttgctgcgg ctcgcgttgg cccacaacgc
      841 gattcggagc gtgacaccgg attttgaagc tcggttgaga gacaacaaag caaagccctc
      901 gtcgctggcc gatctcgagt tcgcgtggac cgataattcc tgttcgaata ttcgaagtgt
      961 cgtccgcgaa cagcacgagc aggatttgat taagttctgg ggtgaacatg aaaccgagct
     1021 ggacgccttt gacgccgaac tcgccggact gtggactcct ctgcctgtcg cgggcgaaag
     1081 tctcagactg cgcacggcga tcggcgaatt aagaacgaaa gcagaggtag tcgggatcgg
     1141 ccaggggacg attagcggac cagatgcagg cgccttgaaa gtgaatgtgg gtacccgtga
     1201 gagtcgcgag gcgctttggc ccagagcgat tctcgagcgc attcgcgcag aagacgacgc
     1261 cgatgtgatc gaactttttg acaggcccgc gaccgatcca gtgcttgcta aagcgcttca
     1321 acgcagggtc gaaattaacg tgaagatcgg agccctgata agagccattg tccggccacg
     1381 caatacggat tacgcgatct atctcgttat tggtccaatg cccggaacgg aagtcgattt
     1441 agctgcggtt aagccgttac taccggaaaa aacgtcgctg ttctggtatg tggtgggcag
     1501 agaggcgccg gagttcagca cagctattcc tgagggaata aagatctacg cttctcccct
     1561 gacgggtgtg acgcaaacgc gtcagggagc caggaagttg atgcaggatt acgtagagat
     1621 cgccttcaag cagcggtttg aaacgatcgt tacgcacctt aaagcagcag agtacaaaga
     1681 tgcgcaactc gcacaacgcg ccggtgcgga actgattgga ccaattgctt tcggtagcgg
     1741 tgtgctcgag gctctgagtc aaccgtttct taatgtcgcc acgcagtttc tgaagcaaaa
     1801 gcgagaacgt tttatcgctg tcggagtggc agagtggccg gaccttgtta gcaattggtc
     1861 ggcggcgacg gcgtctaaac ggctcgcgga cgagatcatc gagaaaggtg agcttgcgcc
     1921 ggaatatcgc ggagttattg aaggggctct aacggagtgt ttcagcggtc cgggcaaggc
     1981 gacttcggat gggtgggtaa aaacatttct ggcggcgacc gaagatgcaa acgcaatttg
     2041 gctgatgttg atgaagtcgc tgctccggca attcgttagg aagaagatgg atgaggcaaa
     2101 gatcactgat cagtctttgc gatcggcga
//
LOCUS       DASWTX010000433         3218 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_289018, whole genome shotgun sequence.
ACCESSION   DASWTX010000433 DASWTX010000000
VERSION     DASWTX010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3218
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289018"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..655
                     /locus_tag="VGD38_06630"
     CDS             <1..655
                     /locus_tag="VGD38_06630"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY0727729.1"
                     /translation="VYEGKTRAELIANGTKAIRGYDPLTGKELWTLGPMSEITTPTPF
                     AAHDLIFVTSGYAPIQPIYAIRPGGNGDLSLKDGKESSEFIAWSKQRGGPYMPTPIVY
                     GDLLYTCSNQGVMTAYNAKTGERVYQERLGGSGGAFTASPVASDGKIYLASEDGDVFV
                     VKAGPKYELLSKNPVGEVMMATPAISDGIVIVRTVSHLFAFGEANNNNQSNSKGSNQ"
     gene            652..1974
                     /locus_tag="VGD38_06635"
     CDS             652..1974
                     /locus_tag="VGD38_06635"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY0727730.1"
                     /translation="MKLTRRITLALLAISSLTTAGSAANWPQWRGPDGSGISTEKNLP
                     ASWTPKTNIKWKAAIPGRGHSSPIVWGNRVFVTTAVEGDVVPGAKAAKHMLGDKEFVH
                     PDSVGADRKHQFKVIALNRETGKVVWDVTAWEGTPYDNRHRKSSYAASTPATDGKMVY
                     AFFGTEGLYAYDFNGKLAWKASLGNMANLGMGTGTSPILFDNLVIVQCDEDNGEGSFI
                     VALDKKTGKEAWRTPRKIQISWSTPLLVKTATRSELITSGTEHVISYDPATGKELWRH
                     KGLESNAIPSPVANNDTVYLVAGYPAKIAMAIKLGGNGDLTGTTNVPWKYAKGTAYVP
                     SPILYGDYLYLTTDRGILTCIDAKTGEVKYEGGRIPIPATFTASPVAFEGKILMTSED
                     GDTFIVKAGPKHEVLATNSVGEPVYASPAVADGRIFIRGEKNLYCIGS"
     gene            2139..>3218
                     /locus_tag="VGD38_06640"
     CDS             2139..>3218
                     /locus_tag="VGD38_06640"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY0727731.1"
                     /translation="MLEQEKRAPWYKSRAIIIGLCVVVVVVVVAAAAILFLSRRSAAT
                     EQHYATLEQHRQQQAAQAPAAAPVATATPVVEASPGASPAQGGATPASGPTRNYWTNY
                     RGPKRDGSYEATPVLTSWPSGGLSPLWKQPIGLGFASCVIADGRAYTIEQRRGQEVAA
                     AYDVATGRELWKQAWNAEYTDSTGDGPRATPTWDNGRVYALGATGELRCLDANNGAVI
                     WGKNILSDNGAENLQWAQAASPLIVDDKVIVLPGGSGGKSVVAYNKNTGAPVWKVQND
                     RQAYVSPMLVELAGRRQIVVVSSSRVMGLVPESGALLWSYPWDTDMGINVSQPVVVDN
                     NRFFISSGYGKGAALVEVKGSGNNFT"
BASE COUNT          697 a          900 c          990 g          631 t
ORIGIN      
        1 cgtttacgaa ggaaagactc gcgctgagct gatcgcgaat ggtacgaaag ccattcgtgg
       61 ctacgacccg ctaaccggaa aagagctctg gaccctcggg ccgatgtctg agatcaccac
      121 gcccacgccg ttcgcggcac acgatctgat cttcgttacg agtggttatg cgccgattca
      181 acccatctac gcgatccgcc ccggcggcaa cggcgatctg tcgttgaagg atggcaaaga
      241 gtcgagcgag ttcatcgcgt ggagcaaaca gcgcggtgga ccatacatgc cgacgccgat
      301 cgtttacggc gacctgcttt acacgtgttc gaaccagggc gtgatgacgg cttacaacgc
      361 caagaccggc gaacgcgttt accaggaacg gctcggcggc agtggcggcg cgttcaccgc
      421 ttcgcccgtc gcgtctgacg gaaagattta tctggccagt gaagacggcg acgttttcgt
      481 cgtcaaggcc ggacccaaat atgagttgct ctcaaagaac ccggtgggtg aagtcatgat
      541 ggccacgccc gcgatctccg acgggatcgt gatcgtgcga accgtctcgc acctgttcgc
      601 ctttggcgag gcgaacaaca acaaccaatc gaacagtaaa ggatcaaacc agtgaaatta
      661 acgcggcgaa tcactctcgc actcttagct atttcttcgc ttaccaccgc cggatcggcc
      721 gcgaactggc cgcaatggcg cggtccggat ggctcgggca tctcaactga gaaaaacctg
      781 ccggcgagct ggacaccaaa aaccaacatt aaatggaaag ctgcaattcc cggacgcgga
      841 cactcgtcgc ccatcgtctg gggcaatcgc gtgttcgtga cgaccgcggt tgaaggcgac
      901 gtggttccgg gagcaaaagc cgcgaagcac atgctcggcg ataaggagtt tgttcatccc
      961 gacagcgttg gcgcggatcg caaacaccag ttcaaagtca tcgccctgaa tcgcgaaacg
     1021 ggcaaggtcg tttgggacgt taccgcctgg gaaggcacgc cttacgacaa tcgtcaccgc
     1081 aagagttcat acgcggcttc aacgccggcc actgacggca agatggtcta cgcgttcttc
     1141 ggcaccgaag gtctttatgc ttacgacttc aacggcaagc tcgcgtggaa agcaagtctc
     1201 ggcaacatgg cgaacctcgg catgggtacg ggaacgtcgc cgattctttt cgacaatctc
     1261 gtgattgttc agtgtgacga agacaacggc gagggatcgt ttatcgtcgc gttggacaag
     1321 aaaacgggca aggaagcctg gcgcacaccg cgcaagattc agatcagttg gtctacgccg
     1381 ctgctcgtga aaaccgcgac gcgttccgag ttgatcacga gcggcaccga gcacgtgatc
     1441 tcttacgatc cggcgaccgg taaagagttg tggcgtcaca aaggtctcga gagcaacgcg
     1501 atcccttcgc cggtggcgaa caacgacacg gtgtatctcg tggccggata tccggcgaag
     1561 atcgcgatgg cgatcaaact cggcggcaac ggcgatttga ccggtacgac aaacgtgccg
     1621 tggaagtatg cgaagggcac ggcctatgtg ccgtcgccga ttctttacgg tgactatctt
     1681 tacctgacga ccgatcgcgg gattcttacg tgcatcgacg cgaagacggg tgaagtgaag
     1741 tacgaaggcg ggcgcattcc gattcccgcg acgttcaccg catcgccggt ggctttcgaa
     1801 gggaagatcc tgatgacgag cgaagacggc gacacgttta tcgtgaaagc cggtccgaag
     1861 cacgaggtgc tggccacgaa ttctgtgggc gagccggttt atgcttcgcc tgcggttgcc
     1921 gatggccgca tcttcattcg cggggagaaa aacctttatt gcatcggtag ttaagttggc
     1981 ggaacatttc cgccgctcat gcgtctaaca acattgacgt agcctaacct gggaccgcag
     2041 aattcttgct gcaaagtgac gcatcacgcg ccgccgaatt tgcagcgaga ggctgcggtc
     2101 ccagtttcaa tcacattaga aatcgctgag aggtgtttat gttggagcaa gagaaacgcg
     2161 caccgtggta caagtcccgg gctatcatca tcggactttg cgtagtcgtg gttgtcgtcg
     2221 tcgtagcagc cgcggctatt ttgtttctca gcaggcgctc ggctgcgact gagcagcact
     2281 acgccacact cgaacaacac cgtcagcaac aagccgcgca ggctccggca gcggcgcctg
     2341 tcgcaactgc cactccggtt gtcgaagcga gtccgggtgc atcgcccgcc cagggcggcg
     2401 ccacgcccgc gagcggtccc accagaaact attggacaaa ctaccgtggt ccaaaacgtg
     2461 acggcagcta tgaagcaacg ccggtgttga cgagctggcc ttccggtggc ttgtcgcctc
     2521 tctggaaaca gcccatcggg cttggcttcg cgtcgtgtgt aatcgccgac gggcgtgctt
     2581 atacgatcga gcagcggcgc gggcaggaag ttgccgccgc ttacgacgtc gcgactgggc
     2641 gcgaactttg gaagcaggct tggaacgccg agtacacgga ttcgacgggc gatggaccac
     2701 gcgcgacgcc gacgtgggac aacgggcgtg tttatgcgtt gggcgccacg ggcgagttgc
     2761 gctgtctcga tgcgaacaac ggtgcggtga tctggggtaa gaacattctt tccgacaacg
     2821 gggcagagaa tctccaatgg gcccaggcgg cgtcgccgct catcgtcgac gacaaagtga
     2881 tcgtgttgcc gggtggctcc ggcggcaagt cggttgttgc ttacaacaag aacaccggcg
     2941 cgccggtttg gaaagtgcag aacgacaggc aggcatacgt ttcgccgatg ctggttgagc
     3001 tcgctgggcg gcgtcagatt gttgttgtca gttcatcgcg cgttatgggc ctcgttccgg
     3061 agagcggcgc gttgctgtgg agttatccat gggacactga catgggcatc aacgtttcgc
     3121 agccggtggt cgtggacaac aatcgcttct ttatctcgtc gggttacggc aagggcgccg
     3181 cgctcgtgga agtgaaggga agtggcaaca attttacg
//
LOCUS       DASWTX010000434         1764 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_50862, whole genome shotgun sequence.
ACCESSION   DASWTX010000434 DASWTX010000000
VERSION     DASWTX010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50862"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..777)
                     /locus_tag="VGD38_06645"
     CDS             complement(<1..777)
                     /locus_tag="VGD38_06645"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY0727732.1"
                     /translation="MNSDRWNRIEALYYSALELDAADREIFVEQQSEGDVGLKDEVLS
                     LLASADRQDSFMEDSAVPLALQVLRSERTGLVGQTIGRYQIVDVLGHGGMGEVYLAHD
                     PSLNRKVALKLLPATITDNHVRVLRFQQEARAASAIAHPNVAHIYEIGEADSLHYITM
                     EYVKGANLRELLKTKALDEAKAIEITKQVCIALAAAHKAGVIHRDIKPENVVVADDGH
                     VKVLDFGLAKLIEGVRDEPAFHGTGTINTHPEMLMGTSQYM"
     gene            complement(828..1388)
                     /locus_tag="VGD38_06650"
     CDS             complement(828..1388)
                     /locus_tag="VGD38_06650"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0727733.1"
                     /translation="MSTTETVTQLLLAWSDGDAAALDRLLPYVETELRRLASYHMKRE
                     SAGHTLQTTALVNELYLKLVDQRQAKWQNRAHFFAVAAQLMRRILVDHARRQLRTKRG
                     GGAVNLALDEAVVLSPEKSGDILSLNEALDRLAKLDPLKARIVELRHFGGLSVEETAE
                     VLKISEVTVSRHWSLAKSWLRREVRG"
     gene            complement(1457..>1764)
                     /locus_tag="VGD38_06655"
     CDS             complement(1457..>1764)
                     /locus_tag="VGD38_06655"
                     /inference="COORDINATES: protein motif:HMM:NF025086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4159 domain-containing protein"
                     /protein_id="HEY0727734.1"
                     /translation="EYEIKDLPLSHPIFHAYLDVEEVVQVPNVYNAQRGITSEKGGVG
                     PHYMGIENKNGRLVAFFARNSDLGDAWEWINDPRYPITYGVVAYKVAINAVIYAMAH"
BASE COUNT          363 a          503 c          490 g          408 t
ORIGIN      
        1 catgtactgc gacgtgccca tcaacatttc cggatgcgta ttgatagtgc cggtgccgtg
       61 aaatgcgggc tcatccctga cgccctcgat cagctttgcc aatccaaaat ctaaaacctt
      121 tacgtgccca tcgtcggcga ccacgacgtt ttccggtttg atgtcgcgat gaatcacgcc
      181 ggctttgtgt gcggcggcca aagcgatgca gacctgttta gtgatttcga tcgcctttgc
      241 ctcatccagt gctttggtct tcaggagctc acgaagattg gcgcctttga cgtactccat
      301 cgtgatgtaa tgaagactgt ccgcttcacc aatctcgtaa atgtgagcga cgttgggatg
      361 ggcaatcgcg gaggccgcac gcgcctcctg ttgaaagcgc agcacgcgca cgtgattgtc
      421 ggttatggtg gcgggaagga gtttgagtgc gaccttgcga ttcaggctgg gatcgtgggc
      481 caggtaaact tcgcccatgc cgccgtggcc gagcacatcg acgatctggt agcggccgat
      541 agtctgtcca accaaccccg tcctctcgga acgcaggacc tgcagcgcca acggcaccgc
      601 cgagtcctcc atgaagctgt cctgacgatc cgcggaagcg agcagcgaga ggacctcgtc
      661 tttgagaccc acgtctccct cagactgctg ctctacaaag atttcgcggt cggcggcgtc
      721 gagttcaagg gcggagtagt aaagggcctc aatcctattc catcgatctg aattcattca
      781 ttttggatcg cgtcaaaaag gctgttgaac tatctctctt tcgcggctta accacgcact
      841 tcacgtctaa gccacgattt tgcgaggctc caatgacggc tgacggtgac ttctgagatc
      901 ttcagcactt cggcagtctc ctcgacactc agtcccccaa aatgccgcaa ctcgacgatc
      961 ctggctttca gaggatcgag tttggcgaga cgatcgaggg cttcgttcag ggacaaaata
     1021 tctccggact tttcggggct caggacgacg gcttcatcca acgccaggtt gacggcgccg
     1081 ccgccgcgct tggttcgtaa ttgccggcgt gcgtgatcga cgaggatccg gcgcattagt
     1141 tgagcggcga ccgcgaagaa gtgggcgcga ttctgccact tcgcctgcct ctgatccaca
     1201 agcttgaggt agagctcatt gacgagtgcc gttgtttgca gagtatgtcc ggcactctcg
     1261 cgtttcatgt gatagctggc caaccggcgc agctcggttt cgacgtaagg cagcaaacga
     1321 tcgagcgcgg cagcatcgcc atcgctccag gctagcagga gttgtgtgac ggtttcagtc
     1381 gtagacatgc ggcagtaatt cccgggccgg tcagtgcccg tgaaacttag agtaatctcg
     1441 tgagccaacc gttattctaa tgcgccatcg cataaataac ggcattaatc gcgaccttgt
     1501 acgccaccac gccatacgtg atcggatagc gcgggtcgtt gatccattcc cacgcgtcgc
     1561 ccaggtcgct attacgtgca aaaaacgcga ccaggcgacc gtttttgttt tcgatgccca
     1621 tgtagtgcgg accgacgccg cctttttcag acgtgatacc gcgttgggcg ttgtaaacgt
     1681 tcggcacctg gaccacctct tcaacgtcga ggtacgcgtg aaagatcgga tggctcaaag
     1741 gcaaatcttt gatttcatac tccg
//
LOCUS       DASWTX010000435         1616 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_289146, whole genome shotgun sequence.
ACCESSION   DASWTX010000435 DASWTX010000000
VERSION     DASWTX010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1616
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289146"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(225..299)
                     /locus_tag="VGD38_06660"
     tRNA            complement(225..299)
                     /locus_tag="VGD38_06660"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(264..266),aa:Gln,seq:ttg)
     gene            complement(305..380)
                     /locus_tag="VGD38_06665"
     tRNA            complement(305..380)
                     /locus_tag="VGD38_06665"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(345..347),aa:Lys,seq:ttt)
     gene            complement(387..463)
                     /locus_tag="VGD38_06670"
     tRNA            complement(387..463)
                     /locus_tag="VGD38_06670"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(428..430),aa:Asn,seq:gtt)
     gene            complement(470..546)
                     /locus_tag="VGD38_06675"
     tRNA            complement(470..546)
                     /locus_tag="VGD38_06675"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(510..512),aa:Met,seq:cat)
     gene            complement(537..1127)
                     /locus_tag="VGD38_06680"
     CDS             complement(537..1127)
                     /locus_tag="VGD38_06680"
                     /inference="COORDINATES: protein motif:HMM:NF025637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEY0727735.1"
                     /translation="MALNDRVLLLNQTYEPLGTVSVARAIIMTFKNTVFVEELDGDRV
                     LRSAHDQFPVPSVIRRRTYINVRRRREQSGMKRLRIYMRDKFRCQYCGDKKSVAELTL
                     DHIMPRSRGGDNSPVNVVTACLQCNNRKGDRTPAEARMPLLTSQTALRVKLERVVLCH
                     YAEARAEWRKYLFMDMHDDRDVMDRVQRERPRFTAV"
     gene            complement(1183..1258)
                     /locus_tag="VGD38_06685"
     tRNA            complement(1183..1258)
                     /locus_tag="VGD38_06685"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1223..1225),aa:Cys,seq:gca)
     gene            complement(1264..1338)
                     /locus_tag="VGD38_06690"
     tRNA            complement(1264..1338)
                     /locus_tag="VGD38_06690"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1303..1305),aa:Gly,seq:tcc)
     gene            complement(1483..1557)
                     /locus_tag="VGD38_06695"
     tRNA            complement(1483..1557)
                     /locus_tag="VGD38_06695"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1523..1525),aa:Asp,seq:gtc)
BASE COUNT          339 a          439 c          485 g          353 t
ORIGIN      
        1 aatggagctt tcaagtgctc gttgaaccag tccatcagct ccctgagcgg gtaatactcg
       61 tcgtcaggaa gaagcgggtc gtacaacaga tcgaaagcag cacagaagag cccttccgaa
      121 acgagcgacg tctcgtggat ctctcggctg acaaatcgaa tgaacatggc cgttcaccgt
      181 ttacgtggtc catcgaagta cctttgttgt gcgagttgag gagatggctc cgggagaagg
      241 attcgaacct tcattttcga gttcaaagcc cgacgtgctg ccagttgcac catcccgaaa
      301 tagatggttg acccgaccgg gctcaaaccg gcacctcgca gcttaaaagg ctgccgctct
      361 gtctctcgag ctccgggtca atagattggc tgtggcggaa ggactcgaac cttcgcatcg
      421 ccgcattaac agtgcggtgc cttaccagct tggctacgcc acaagaattt ggtggctgtg
      481 ggtggattcg aaccaccaac ctcgcgctta tgagacgctt gctctgtccc tttgagctac
      541 acagccgtaa accggggccg ttcgcgctgt acacggtcca tgacgtcgcg atcgtcgtgc
      601 atgtccatga acaggtactt gcgccattcg gctcgcgcct ctgcgtagtg acaaagcact
      661 acgcgttcga gtttcacgcg caatgccgtc tgcgaagtaa gcaggggcat tcgtgcttcc
      721 gcgggcgtgc gatcgccctt gcggttgttg cactgcagac aagccgtgac gacgttgacc
      781 ggtgagttat caccaccgcg cgaacgcggc atgatgtgat cgagcgtcag ttccgcaacg
      841 ctcttcttgt cgccgcagta ctggcagcgg aacttgtcgc gcatgtagat acgcaggcgc
      901 ttcatgcccg actgctcgcg gcggcggcga acgttgatgt aagtgcgacg gcgaatgacc
      961 gaaggaacag gaaactgatc gtgcgccgag cgcaatacgc ggtcgccgtc gagctcttcg
     1021 acgaacaccg tgtttttgaa cgtcatgatg atcgcgcgcg cgacactgac ggtgccgagc
     1081 ggttcgtagg tttggttgag cagtagaact cggtcgttga gtgccattac ccggcacctc
     1141 ctttctgtaa cgttggacca cggtgggtgg tccactggag tttggagcgc gcggtgagac
     1201 tcgaactcac gtgtaccgga tttgcaatcc ggcgccttag ccgcttggcg acgcgcgcaa
     1261 agttggaacg gaaggagaga ttcgaactct cgagtcgagt ttggaagact cgcatgtttc
     1321 cagctacatc acttccgcag gatggggcgc aggttagcgg tgaggcgtgc ctgcgccgtc
     1381 gtcgtgaggt gaggtcgttg tcgccacaga tgaacacgaa ctaacacaga gaagattctg
     1441 gtccgtgttc atctgtgtag gtctgtggct gaactgaaaa tatggcggaa ctgaacggac
     1501 tcgaaccgtc atcggcttgg ttgacaacca agtgcctcac ctctcggcca cagttccaag
     1561 cgagaatggc agcgcgtgtc ggattcgaac cgacgttctc ctgattgaag gtcagg
//
LOCUS       DASWTX010000436         4696 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_311227, whole genome shotgun sequence.
ACCESSION   DASWTX010000436 DASWTX010000000
VERSION     DASWTX010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4696)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4696)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4696
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311227"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..586)
                     /locus_tag="VGD38_06700"
     CDS             complement(<1..586)
                     /locus_tag="VGD38_06700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727736.1"
                     /translation="MPQASAKNENDLLQSSAFERASLKSESYRIVALLCVLGGILLFI
                     VVRGIAMQNYMLLAGQAVVLALVIAHEVVMLRAVRSALRDDAAVLPELWVFNVLIESQ
                     LPTVALMVLLLAQWMTPYQVLVAPTIVVYFLFITLSTLRLRPSLTFLTGLLSALGYLF
                     VSMLVRLRTEPTAAAEAFPFPVYCVYAVLIFAAGI"
     gene            complement(612..2012)
                     /locus_tag="VGD38_06705"
     CDS             complement(612..2012)
                     /locus_tag="VGD38_06705"
                     /inference="COORDINATES: protein motif:HMM:TIGR01845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HEY0727737.1"
                     /translation="MKRLVVALVVICMAQAGVPAQTSQKPAVQTPGVFRADTMPQPSA
                     QSLADLKWFEIFKDQKLQDLLRDALSNNYDLRQAIANIDAARANLGITRSEQFPTITA
                     SGDVVNQRISRGGQFDLPAPAKRDRSFGSILLNLLTFEIDVWGRLRKQTAAARADLMA
                     TEEAHRFVVTTLISDIATAYFSLRELDFELDISRRTLVSREESLRLITMRQQRGVSTM
                     LEVRQAEELVYDAREVIPALEQSIQQTENFLSYLTGRNPSAIERGLSLTEHQLPPTVP
                     AGLPSDLLERRPDIRAAENTLAAANLRIDVAKKEFFPRISLTSFLGYESGQLTSLFSG
                     SRNIWTLAGTVTQPIFTGGRLKSNVRFTQAQRDFFVVDYQKTVQSAFREVSDSLIAHQ
                     KVKEVRTQRALLVETLRDRSRLSYLRYTGGVATLLDALDADRELFEAERSLALARRDE
                     LLSVVQLYRALGGGWQ"
     gene            complement(2012..>4696)
                     /locus_tag="VGD38_06710"
     CDS             complement(2012..>4696)
                     /locus_tag="VGD38_06710"
                     /inference="COORDINATES: protein motif:HMM:TIGR00915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY0727738.1"
                     /translation="LRDQILRIPGIAQVDLFGGTDYGMRVWFKPDRLAKLGLTPADVI
                     SAIKEQNLQAPAGKIGGAPTPVDQEFTETLSAPGRLITPEEFENIIIRQTETGAVVRV
                     KDVGRAEMGSQDYNSFGRLNGKPSGAMAVYLLPGANQLQAAETIYETMEHAKTLFPPN
                     MDYTIVYDTTPAVEASIEEILHTFVEALILVTVVVFIFLQNIRATIIPLITIPISLVG
                     TFIFFPLLGFSINTLSMFGLVLAIGIVVDDAIVVVEAVIHHLEHGLSPKEATIKAMSE
                     VSAPVIGIALILSAVFVPVALLGGLVGSMYKQFALTIAISVLLSAFNALSLTPALCAM
                     LLREPKPMRGPLGAFFRGFNKVFDVTTNGYVHVSRLLVRRGIITIGIVAVVVLGAGLF
                     ARAIPAGFIPDEDQGIFGVNVQLPPGASLARTGEVLKKVEEILAKTEGVESYQTVGGY
                     GVVTNTYQPNYGSIFARLKPWDERHGDALHVKGIMAGLQKQFAAIPEGVVFPFNIPTL
                     SGFGAASGFNFLVQDRSGTMTVEQLGDQVSSFIAAGRQRPELGNLFTSFDPNYPQVKV
                     ELDREKARTLGVPVNEVFQTMSTAMGGAFVNDFNRFGRLYRVYVQAESADRLKSSDIG
                     KIYVRSRTTNSMVPLSTLVTINDISGAELTTRFNLLRSVELQGSPAPGYTSGQALAAL
                     EEVFAQTMPTEMGFAYSSLSYQEKIAPPPAPTFILALICVFLLLAAMYESWRLPWAVL
                     LGSPLVALGALAGVWFFGYDNNVYVQIGLVMLIGLAAKNAILIVEFAKAKHEEGSSLE
                     DAALTSARLRFRPILMTAFAFILGVVPLMKASGAGAGAQNVMGVGVFFGMLVATALGV
                     FIIPGNFTFIEGLGRRKQKQAAAPPHPVPATAEAGGDH"
BASE COUNT         1045 a         1399 c         1332 g          920 t
ORIGIN      
        1 tgatgccagc cgcaaaaatg agcaccgcgt aaacgcagta gaccgggaag ggaaacgcct
       61 ccgcagcggc agtcggttcc gttctaagcc gtaccagcat cgaaacgaag agatagccca
      121 gcgctgacag gagaccggtc agaaacgtaa gactcggacg cagccgcagc gtcgagagag
      181 ttatgaacag gaagtaaaca acaatcgtcg gcgcgaccag cacctggtaa ggcgtcatcc
      241 attgcgccag caacaacacc atgagcgcga ccgtcggcag ttggctttcg atcagaacgt
      301 tgaaaaccca taactcgggt aacactgctg catcgtcgcg aagcgcgctc ctgactgcgc
      361 gcaacatcac cacctcatgc gcgatcacca acgccagaac caccgcttga cccgccagaa
      421 gcatgtagtt ctgcatcgcg attccgcgaa caacgatgaa gagcagaatc ccgcccagca
      481 cgcagagcaa cgcgacgatg cggtacgatt cacttttgag tgaagctctc tcgaaggcgc
      541 tggattgcag caggtcgttc tcgttttttg cgcttgcttg cggcattgcg aatcccggtt
      601 tccgcggctc tttactgcca gccaccgccg agtgcccggt acagttgcac gaccgacaac
      661 aactcgtcgc gccgcgcgag cgccaaactt cgttcggctt caaacagctc acgatccgcg
      721 tcgagcgcat caagcaacgt ggccacgccg ccggtgtaac gtaagtagga aagacgggaa
      781 cggtcgcgca aggtttcgac gagcagcgcg cgttgcgtgc gcacctcttt gaccttttga
      841 tgcgcaatca acgaatccga aacttcgcga aacgcagact gcacggtctt ctgataatcg
      901 acgacgaaga aatcacgctg cgcctgggtg aaacgcacat ttgatttcaa acggccgccc
      961 gtgaagatgg gttgtgtaac tgttcccgcc agcgtccaga tatttctgct gccactgaaa
     1021 agacttgtca gttgtccact ctcgtaaccg agaaaagaag ttaacgagat ccgcggaaag
     1081 aactctttct tcgcgacgtc gatccgaagg ttagcagccg ccagagtgtt ctcagccgcg
     1141 cgtatgtcgg gacgtcgttc aagcagatct gaaggtaaac cggcaggaac cgttggaggc
     1201 agttgatgct cagttaaact gagtcctcgt tcaattgctg acggattcct gccggtgaga
     1261 taactgagaa aattttccgt ttgttggatt gactgttcga gcgccggtat cacttcccgc
     1321 gcgtcataaa caagttcctc cgcctggcgc acttcgagca tcgtcgagac gccgcgctgt
     1381 tgccgcatcg tgatcagacg cagcgactct tcgcgcgaga caagtgtgcg ccgcgaaatg
     1441 tcgagctcaa aatcaagctc acgtaaactg aaatacgctg tggcaatgtc gctgatgagc
     1501 gtggtgacga cgaacctgtg cgcctcttcc gtcgccatca gatcggcgcg cgcagccgcg
     1561 gtctgtttgc gcagccgtcc ccaaacgtcg atctcaaacg tcagcaggtt cagcaggatg
     1621 ctgccgaaag atcgatcgcg tttggccggc gcgggcagat caaactggcc accgcgcgaa
     1681 atgcgttgat tcaccacatc gccgctggcc gtgatcgtgg gaaactgttc cgatcgtgtg
     1741 ataccgagat tcgcgcgcgc cgcatcgatg tttgcgatag cctggcgcag atcgtagttg
     1801 ttgctcagcg catcgcgaag caggtcctgc agcttttgat ctttgaagat ctcgaaccac
     1861 ttgagatcgg caagggattg cgcactcggc tgcggcatcg tgtcagcacg gaagacaccc
     1921 ggcgtctgca ccgcgggttt ttgcgatgtt tgtgccggga caccggcttg ggccatacag
     1981 ataactacta gcgccacaac taatcgcttc atcagtggtc acctccagct tcggcggtcg
     2041 ccggcaccgg atgaggcggc gcggccgcct gcttctgttt gcgccggccc agtccttcaa
     2101 tgaaggtgaa atttcccgga atgatgaaga cccctaaggc ggtggccacg agcatgccaa
     2161 agaacacacc aacgcccatc acattctgtg ctccggcgcc cgcgccactc gccttcataa
     2221 ggggaaccac gccgagaata aatgcaaacg ccgtcatcag aatcgggcgg aagcgcagcc
     2281 gcgccgatgt gagcgcggcg tcttccagcg atgagccttc ttcgtgtttg gcctttgcaa
     2341 actccacgat caggatcgcg ttcttcgccg cgagtccgat cagcatcacc agtccgatct
     2401 gcacgtagac gttgttgtcg taaccaaaaa accaaacacc cgccaacgcg ccgagagcaa
     2461 ccaacggcga tcccaacagc acggcccacg gcaagcgcca actctcatac atcgccgcga
     2521 gcagaaggaa gacgcagatg agcgcgagga tgaacgttgg cgcgggcggc ggcgcgatct
     2581 tctcctgata cgacagcgac gaatacgcga aacccatttc cgtcggcatc gtctgcgcga
     2641 aaacctcttc gagcgcggcg agtgcctggc ctgacgtgta accgggggcc ggagagcctt
     2701 gcagttccac cgatcgcaac agattgaaac gcgtcgtcag ttcagcgccc gagatgtcgt
     2761 tgatcgtcac gagcgtcgac agtgggacca tcgagtttgt ggttctcgaa cgcacgtaga
     2821 tttttccgat gtcactcgac ttcaatcgat ccgctgactc cgcctgcacg tagacgcggt
     2881 acaagcgtcc gaaacggttg aagtcgttta caaacgcgcc tcccatcgct gtcgacatcg
     2941 tttgaaagac ttcgttcacc ggaacgccga gcgtgcgtgc tttctcgcga tcgagctcga
     3001 ctttgacttg cgggtaattc ggatcgaatg acgtgaacag gttgccgagt tcgggacgtt
     3061 ggcgtccggc ggcgataaac gaactgacct gatcgccgag ctgttcgaca gtcatggtgc
     3121 cgctgcgatc ctggaccagg aagttgaatc ccgacgcggc gccgaatccg ctgagtgtcg
     3181 gaatgttgaa cggaaagacc acgccttcgg gaatcgcggc aaactgtttt tgcagtcccg
     3241 ccatgatgcc tttcacgtgc aaagcatcgc cgtgccgttc gtcccacggc ttcaaacgcg
     3301 cgaagatcga gccgtagttt ggctggtacg tgttcgtgac cacgccataa ccaccaacgg
     3361 tttgatacga ctcgacgcct tccgtctttg ccagtatctc ttcaactttc ttcagcactt
     3421 cgccggtgcg cgcgagcgac gctcccggcg gcaactgcac gttgacaccg aagatgccct
     3481 ggtcttcatc cggaataaat cccgccggga tcgctcgcgc aaacaaaccc gcgccgagca
     3541 cgaccacggc cacgatgccg atcgtgatga ttccgcgtcg cacgagcagt cgcgaaacgt
     3601 gaacataacc attcgtcgtc acgtcgaata ctttgttgaa accgcggaag aacgcgccga
     3661 gtggtccacg catcggcttg ggctcgcgca acagcatcgc gcagagcgcc ggcgtcaacg
     3721 acagcgcgtt gaacgcagac agcaacaccg agatcgcgat cgtcaaagca aactgcttgt
     3781 acatgctgcc gacgagaccg ccgagcagcg ccaccggcac aaacaccgcc gacagaatca
     3841 gagcgatacc gatcacgggc gcagacactt cggacatagc tttgatcgtc gcctctttcg
     3901 gagacagacc atgctcgagg tgatgtatta ctgcttcgac caccacgatc gcgtcgtcaa
     3961 ccacgatgcc gatcgccagc accagtccaa acatcgaaag cgtgttgatg gaaaagccga
     4021 gcaggggaaa gaagatgaac gtgccgacga gcgagatcgg aatcgtgatc agtgggatga
     4081 tcgttgcccg gatgttctgc aggaagataa agacgacgac ggtgacgaga atcagtgctt
     4141 cgacgaacgt gtgcagaatc tcctcaatgg acgcttcgac cgccggcgtc gtgtcgtaga
     4201 cgatcgtgta gtccatgttc ggcggaaaga gcgtctttgc gtgctccatc gtctcgtaga
     4261 tcgtttccgc ggcctggagc tggttcgcgc cgggcagcag gtaaacggcc atcgcgccgc
     4321 tcggctttcc gttgaggcgt ccgaaggagt tgtaatcctg cgagcccatc tcggcacgcc
     4381 cgacgtcctt cacacgaact acggcgccgg tttcggtttg gcgaatgatg atgttctcaa
     4441 actcttcggg cgtgatgagc cggccgggtg cgctcagagt ttcagtgaac tcctggtcca
     4501 ccggtgtcgg cgctcctcct atcttgcccg cgggagcttg caggttctgt tctttgatcg
     4561 ccgagatgac gtccgcggga gttagaccaa gcttcgcgag gcgatccggt ttgaaccaca
     4621 cacgcatgcc gtagtcggtg ccgccgaaga gatcgacctg tgcgataccc ggaatgcgca
     4681 ggatctgatc gcgcag
//
LOCUS       DASWTX010000437         1970 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_289186, whole genome shotgun sequence.
ACCESSION   DASWTX010000437 DASWTX010000000
VERSION     DASWTX010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1970)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1970)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1970
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289186"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..222)
                     /locus_tag="VGD38_06715"
     CDS             complement(<1..222)
                     /locus_tag="VGD38_06715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727739.1"
                     /translation="MHKYIWLVPLLPLLGAAINGLFGRKFRFSETLIGGIAVGSVALA
                     FLISVAAVISYGSAQWPNPYLTSQDGFSFL"
     gene            complement(224..628)
                     /gene="nuoK"
                     /locus_tag="VGD38_06720"
     CDS             complement(224..628)
                     /gene="nuoK"
                     /locus_tag="VGD38_06720"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF004320.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HEY0727740.1"
                     /translation="MLNSFIPALAFLFQDDGSRLELMRRAAANPDLSKFLVIGALLFI
                     IGVAGVLTRRNIIVIFMSIELILNAANLNFVAFSRYLQETGSVNAVAGQIFTVFVIVV
                     AAAEAAIGLGIVIALYRNKETIWVDEIDLLKW"
     gene            complement(631..1308)
                     /locus_tag="VGD38_06725"
     CDS             complement(631..1308)
                     /locus_tag="VGD38_06725"
                     /inference="COORDINATES: protein motif:HMM:NF012709.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HEY0727741.1"
                     /translation="MTLSGYEALFFWIFGLAAIFAALLTVMARNAVHSALFLISSLVS
                     VAALFVLAGAEFIAGVQILVYVGGVMVLFLFVIMLVNVGAEERGSEQIFNKQRQVTAS
                     LIFCFLLVAGVLYAVNEGYRGLQKLHPPREASLGATENPSGPPNATGSSVMTDDTESV
                     AGSLYRYASLPFEIASVLLLVAIIGSVMLARTLKQEASADDVDPDTLQEEIARDPELA
                     KLEPRSE"
     gene            complement(1356..1889)
                     /locus_tag="VGD38_06730"
     CDS             complement(1356..1889)
                     /locus_tag="VGD38_06730"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit I"
                     /protein_id="HEY0727742.1"
                     /translation="MPLVKTPKPTWSQKLKRFFMIDLIKGLALTLKYNLGAITDKDAV
                     AGKGIYTEQYPKVRPDVAPRFHGAPRLNMDPETHDTLCIACNLCAVACPEDCIDVIPM
                     DVEIIVAGKPRRKKVLDEFIFDTSRCMFCALCQEACPTACLELTQEFELATYSRAGFV
                     WNREMLEQGRETVKYTS"
BASE COUNT          457 a          567 c          541 g          405 t
ORIGIN      
        1 aagaaaacta aaaccgtcct ggctcgtgag atatggattg ggccactgcg cggatccata
       61 cgaaattacc gccgcgacgc tgatgaggaa agccagcgca acggagccaa ccgcgatgcc
      121 gccgatcaac gtttcggaaa aacgaaactt acggccgaag aggccgttga ttgcggcgcc
      181 aagcagtggt agcaggggaa ctagccaaat gtatttgtgc atttcaccac ttcagcagat
      241 cgatttcgtc tacccagatg gtttccttgt ttcgataaag cgcgatcacg attccgagcc
      301 cgatcgcggc ttcagccgcg gccacgacga tcacaaacac cgtgaagatc tgtcccgcga
      361 ccgcgttcac gctgcccgtt tcctgcaggt aacgtgagaa cgcgacgaag ttgagattcg
      421 cggcattgag aatcaactcg atcgacatga agatgacgat gatgttgcgc cgcgtcagca
      481 cgcccgccac gccgatgatg aagagcagcg cgccgattac aagaaacttc gacaggtcgg
      541 ggttcgccgc cgccctgcgc atcagttcta aacggctgcc gtcgtcctga aaaagaaacg
      601 ccagcgccgg aatgaaagag ttgagcatgt tcattcagac cgtggttcca acttcgcgag
      661 ttcgggatct cgcgctatct cttcctgcaa ggtgtcggga tcgacgtcgt cggcagaagc
      721 ttcctgtttc aacgtgcgcg ccagcatcac tgagccgatg atggccacca gcaacaggac
      781 gctcgcgatt tcgaaaggca acgaagcgta acgataaaga ctgccggcga cgctttcggt
      841 gtcgtcggtc atgacgctgc ttcccgtggc gttcggcggg ccactcggat tttcggttgc
      901 gccgagcgat gcttcacgag gcggatgaag tttctgtaat ccgcggtaac cttcgttgac
      961 cgcgtagagc acgccggcga cgagcaggaa acagaagatc agactcgccg tgacctggcg
     1021 ttgcttgtta aagatctgct cgctgcctct ttcttcagcg ccgacgttga cgagcatgat
     1081 gacaaacaga aacaggacca tcacgccgcc gacgtaaacc agtatctgca cgcccgcgat
     1141 aaactccgcg cccgcgagca caaacagcgc cgccaccgaa accagtgacg agatcagaaa
     1201 cagcgcacta tgcacggcat tgcgcgccat caccgtcaac agcgccgcaa aaatcgcagc
     1261 gagtccgaag atccagaaga agagcgcttc gtagcccgag agcgtcatga tttttaatag
     1321 gtcgtatagg tcctatagaa cctatttaaa gattgctagc ttgtgtactt cacagtttca
     1381 cggccttgct ccaacatctc gcggttccag acgaagccgg cgcgtgagta ggtcgctaat
     1441 tcgaattcct gcgtcagctc gaggcacgct gtcgggcatg cttcctggca gagcgcgcag
     1501 aacatgcaac gcgaggtgtc gaagatgaat tcgtcgagca ctttcttacg ccgcggtttg
     1561 cccgcgacga tgatctcgac gtccatcggt atcacgtcga tgcaatcctc aggacacgca
     1621 accgcgcaca ggttgcacgc gatgcagagc gtgtcgtgtg tttccggatc catgttcaaa
     1681 cgcggcgcgc cgtgaaaacg cggcgctacg tccgggcgca ctttcggata ctgctcggtg
     1741 tagattccct tacccgcgac cgcgtccttg tcggtgattg cgccgaggtt gtacttgagc
     1801 gtgagcgcga gtcccttgat cagatcgatc atgaagaacc gtttcagctt ctgcgaccac
     1861 gtcggttttg gagtcttaac taaaggcatc gaaactacac ctcacttgta gaaaccgcgg
     1921 gtttaccttt cggcaaattc accagacgaa tatttcgccg ctgcgtcttc
//
LOCUS       DASWTX010000438         3880 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_29148, whole genome shotgun sequence.
ACCESSION   DASWTX010000438 DASWTX010000000
VERSION     DASWTX010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3880)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3880)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3880
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29148"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..616)
                     /gene="kdsA"
                     /locus_tag="VGD38_06735"
     CDS             complement(<1..616)
                     /gene="kdsA"
                     /locus_tag="VGD38_06735"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: protein motif:HMM:NF003543.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HEY0727743.1"
                     /translation="MSSIKAFSVGNVTFGDGRLTIIAGPCVIESPEHALMMARECSQR
                     ARAAGLDYVFKSSFDKANRSSIHSFRGHGMEAGLEVLQRVKEELGVPVLTDIHDVSQV
                     EQVAAVADVLQIPAFLCRQTDLLVAAAKSGRVVNVKKGQFLAPQDARNIVDKVREAGC
                     EKLLLTERGASFGYNNLVVDMRSFPIMREFGVPVVFDVTHSLQQP"
     gene            complement(1447..2469)
                     /locus_tag="VGD38_06740"
     CDS             complement(1447..2469)
                     /locus_tag="VGD38_06740"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY0727744.1"
                     /translation="MQTNNDPLIDRTLDNKYHLEERLGEGGMGTVYRARHLLMDRPVA
                     IKVLHPQFVDNEGARSRFQLEARAAVLLHHPNAVSVTDFGQTGDGMVYIVMELLNGST
                     LREILAKEAPLETARATSIMLQTSAAVAAAHKAGIIHRDLKPSNILVTKSSAAPAIVK
                     VLDFGIAKLAAGVFEDEDASAVTLPGTPIGTPRYMAPEQYEGRDLTPAADVYSLGVML
                     YEMLTGMAPFTGVSPVEIAIKHANDAPLRPREIVAAIPEDVERVVLHALEKQPEARPA
                     NAEEFHGELLETAERLGLEHHAITSAPDINALRGAGLESPSGRLVVDIAKLRETMATD
                     KTEKNN"
     gene            complement(2470..>3880)
                     /locus_tag="VGD38_06745"
     CDS             complement(2470..>3880)
                     /locus_tag="VGD38_06745"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF003792.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEY0727745.1"
                     /translation="SVIEKERRGDYLGKTIQVIPHITNEIKEAVRSVAEKDKPDVVIV
                     EIGGTVGDIESLPFLEAIRQMGNEEGAGNALFIHVTLVPYIAAAGELKTKPTQHSVRD
                     LREIGIAPDILLCRSEKPLSRDLRGKIALFCNVKESAVISAQDVDTIYDVPLAFHEQG
                     LDDLIVMQLGLHGQAPQADLAEWRNLVATIRDPSGGEASIAIVGKYVELEDSYKSLRE
                     ALTHGGVANNLRVDVKWIESEELMDDDYEDRLRDFDAILVPGGFGKRGVAGMIRAIHY
                     ARKSKTPYFGICLGMQTACIEYARNVAELKDADSTEFDSDTPHPIIFKLRDLINVEEL
                     GGTMRLGAWFCRLAPGSLVRDIYGGAEEISERHRHRYEFNPEFRQRLERDGLVFSGVS
                     PDGKFVEMIELPREVHPWFVGCQFHPEYKSKPLNAHPLFASFVRAAYENRLQSETSME
                     KNGEVDLVMHERVTATSGD"
BASE COUNT          773 a         1204 c         1087 g          816 t
ORIGIN      
        1 ccggctgctg caacgagtgc gtcacgtcaa aaaccaccgg cacgccgaat tcgcgcatga
       61 tcgggaacga gcgcatgtcg accaccagat tgttataacc aaaactcgcg ccgcgttccg
      121 tcaacaagag cttttcgcaa ccggcttcac ggaccttgtc gacgatgttt cgtgcatcct
      181 gcggcgcgag aaactgcccc ttcttcacgt tcactactct gcccgatttc gcggccgcca
      241 cgagcagatc cgtttgccgg caaagaaacg ccgggatctg caacacgtcc gcaaccgcgg
      301 cgacctgttc gacctgcgac acgtcgtgta tgtcagtcag caccggaacg ccgagctctt
      361 ccttgacgcg ttgcagcact tcgagtccgg cttccattcc gtgaccacga aagctgtgaa
      421 tcgacgagcg attcgcctta tcaaaggacg acttgaaaac atagtcgaga cccgcggccc
      481 gcgcgcgttg cgaacactcg cgcgccatca tcagcgcatg ctccggactc tcgatcacac
      541 acggtccggc gatgatcgtg agccggccgt ctccaaacgt aacgttacca accgagaatg
      601 cttttatgct gctcatttcc ccgagcgagt atacgttaac gctcagcttt gcctcaaaag
      661 tgcctttggc ggggtggtgt cctaacctga acgccgaagg cgtttactaa cttcagccca
      721 cgggttgctt caaccctggg ataagtaaga cagaaggacc aacaccaaag gtgttggcaa
      781 gtcgtcggcg cagtaagtcg ccaacgcttt cagcgtttac aacgacaatg gttaaaggtt
      841 cccagggttg tcgtaaccgc caaccctggg ctgaaactcg acaacgcctt cggcgttcag
      901 attaggacac tacctttggc ggctcgcccc ggagtgcctt gagcggctcg ccctgaagtt
      961 actgagcggc ttcgccgccg gatgtgaggc ggggctctgc cccgctagtt tactgaacgg
     1021 ctcgccccgc tggttactga ccggcttcgc cgccggatgt gaggcggggc tctgccccgc
     1081 cgtcagcttt gaaaaaaagc gtttgggctc tgcccctggt tcgggctctg cccttgtacc
     1141 ttaggccata ggccgtacga ggggcatagc cccatggatc ttttgctcag ccgaccggcg
     1201 gggcaaagcc ccgcctcaca tccggcggcg aagccgctca aagacctttg ggcgaagccg
     1261 ctcaaagacc tttgggcgaa gccgtcaaag acctttgggc gaagccgtca aaggcctttg
     1321 ggcgaagccg ctcaaaaaac tttgggcgca gccgaccctt tggcgaacgg cgctcaacaa
     1381 ctttagcgaa gcccctcgag aacttttggg taaagccgct caaggaactt cttaagccac
     1441 gccgctctag ttgttcttct cagtcttatc ggtggccatg gtctcgcgga gtttcgcgat
     1501 gtcgacgacc agccggcccg acggcgattc cagtcctgcg ccgcgcaggg cattgatgtc
     1561 gggcgcgctg gtgatcgcgt ggtgttcgag cccgagccgt tccgcggttt cgagcagctc
     1621 gccgtgaaac tcttcagcgt ttgccggccg cgcttccggt tgtttctcca gcgcatgcaa
     1681 cacgacccgt tccacgtcct ccggtatcgc ggccacgatc tcgcgcgggc gaagtggcgc
     1741 atcattcgcg tgcttgatcg cgatctcaac cggcgacact cccgtgaacg gcgccatccc
     1801 ggtcaacatc tcgtaaagca tcacgccgag actataaaca tcagcagcgg gcgtcaggtc
     1861 gcggccctcg tattgttcgg gcgccatgta acgcggcgtg ccgatcggcg tccccggcaa
     1921 cgtcaccgcg ctcgcgtctt cgtcctcaaa cacaccggcc gcaagcttcg caattccgaa
     1981 gtcgagcacc ttcacgatcg ccggagccgc cgaactcttc gtgacaagaa tgttcgacgg
     2041 tttcagatcg cgatgaatga ttcccgcttt gtgtgcggcg gcaaccgcag ccgacgtttg
     2101 cagcatgatc gaggtggcgc gtgcagtttc gagtggcgct tccttcgcga gtatctcgcg
     2161 cagcgtgctg ccgttgagca gttccatcac gatgtaaacc atgccatcgc ccgtttgacc
     2221 gaagtcagtt acggacacgg cgttcggatg atgcaacagc accgccgcac gcgcctcgag
     2281 ttgaaaacgc gaacgcgctc cttcgttatc gacaaactgc ggatgcaaca ccttgatcgc
     2341 aaccggacgg tccatcaaca aatgccgcgc ccgatacacc gtccccatcc cgccttcgcc
     2401 gagacgttct tcgaggtggt acttgttgtc gagggttcga tcgatgagtg gatcgttatt
     2461 agtttgcaat caatcaccac tggtggcagt tacacgctcg tgcatcacca ggtcgacctc
     2521 gccattcttc tccatcgagg tctctgactg caaacgattc tcgtaggcag cacggacgaa
     2581 cgacgcaaac aacgggtggg cattgagcgg tttcgatttg tattccgggt gaaactgaca
     2641 accgacaaac cacggatgga cctcgcgcgg cagttcgatc atctccacaa acttgccatc
     2701 gggcgacacg ccgctgaaca caagtccatc gcgttcgagt cgctgccgaa actcaggatt
     2761 aaattcgtaa cgatgacgat gacgttcgct gatctcttcg gcgccgccgt agatgtcgcg
     2821 cacgagtgaa ccgggcgcga gacgacagaa ccacgcgcca agacgcatgg tcccgcccag
     2881 ctcttcaaca ttgatcagat cgcgcaattt aaaaatgatc ggatgcggtg tgtcgctatc
     2941 aaattcagtc gaatcagcgt ccttcaattc ggcaacgttg cgcgcgtact cgatacacgc
     3001 ggtctgcata ccgagacaga taccgaagta cggtgtctta ctcttacggg cataatggat
     3061 cgcgcggatc atccccgcga cgccgcgctt gccgaagccg ccgggcacga ggatcgcgtc
     3121 gaagtcgcgc aagcgatctt cgtagtcgtc gtccatcaac tcttccgact cgatccactt
     3181 aacgtcgacg cgcaggttgt tggctacacc gccgtgcgtc aacgcttcgc gcagagattt
     3241 gtatgagtct tcaagctcga cgtacttgcc gacgatggcg atcgacgctt cgccgccgga
     3301 aggatcgcgg atcgtcgcga cgagattgcg ccactccgcg agatcggcct gcggcgcctg
     3361 cccgtgcaaa ccgagttgca tcacgatcag atcgtcgagg ccctgttcgt gaaacgcgag
     3421 cggcacgtcg tagatcgtgt cgacgtcctg cgcgctgatc acggctgact ccttcacatt
     3481 gcagaagagc gcgatcttgc cgcgcagatc gcgtgacaac ggtttttccg aacggcacaa
     3541 aaggatgtcg ggcgcgatac cgatctcgcg caggtcgcgc accgagtgtt gcgtcggttt
     3601 ggttttcagt tctccggctg cggcgatgta cggcacgagc gtgacgtgaa tgaacagcgc
     3661 gttgcctgcg ccttcttcgt tacccatttg gcgaatggct tcgagaaacg gcagcgattc
     3721 gatgtcgccg actgtgccgc cgatctcgac gatcacgacg tcgggtttgt ctttctcggc
     3781 aacgctgcgg actgcttcct tgatttcgtt ggtgatgtgc gggattacct gaatggtctt
     3841 cccgagatag tcgccgcggc gttccttctc gatgactgag
//
LOCUS       DASWTX010000439         1533 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_265573, whole genome shotgun sequence.
ACCESSION   DASWTX010000439 DASWTX010000000
VERSION     DASWTX010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1533
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265573"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(182..>1533)
                     /locus_tag="VGD38_06750"
     CDS             complement(182..>1533)
                     /locus_tag="VGD38_06750"
                     /inference="COORDINATES: protein motif:HMM:NF012602.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin dinucleotide binding
                     domain-containing protein"
                     /protein_id="HEY0727746.1"
                     /translation="GIDANAIRVLAREFATAESAVCHGRIGVSTQEFGAVCQWLINVL
                     NIVTGNLDRPGGAMFTLPAFDPLTAPESLAPRGGFGRWRSRVRELPEFAGELPVAVLA
                     EEILTEGPGQIKALVTYAGNPVLSTPNGRKLDRALASLEFMVSIDPYINETTRHAHII
                     LPPTSALERGHYDMAFNILTVRNTAKFSPALFAPSDDTLHDWQILSELQSRLDRKGQR
                     GAVLRKWSTRFLGPERILDLGLRFGPYGAKLNPFSSGLTLRKVKQAVHGIDLGPLKPC
                     LPERLRTNDKRIDLAPEVLVRDIARVKKVLIDGAVASSNGELLLIGRRQLRSNNSWMH
                     NSERLVKGNPAKPPCTVIMHTSDAAHRALVSGQNVLVRSRIGEIVLPLEVSDEIMPGV
                     VSIPHGWGHERAGNHLAVAQQHAGVSINDLTDPLAVDALCGTAAFSATPVTVEAKQH"
BASE COUNT          317 a          496 c          429 g          291 t
ORIGIN      
        1 ggcacagccc caaggttcac tttataacct accggcgagg cggagcctcg cctcacatcc
       61 ggcggcgaag ccgcagtgtt aggtttgtag gtcgggccac atccggcggc gaagccggag
      121 cagagagacc tttcgggcaa agccggttga actggttgaa ctctgaacgg cggtggttat
      181 gttagtgctg ctttgcttcg acggtcacgg gggtggcgct gaaggcggcg gtgccgcaga
      241 gggcgtcgac ggcgaggggg tcggtcaggt cgttgatgct gacgcccgcg tgttgttggg
      301 ctacggcgag gtgatttcca gcgcgctcgt ggccccagcc gtgcggaatg ctcacgacgc
      361 ccggcatgat ctcgtcgcta acttccaaag gcaaaacaat ttcaccgatc cgcgaacgca
      421 ccagcacatt ctgaccagag acgagcgcgc gatgagccgc atcgctcgtg tgcatgatga
      481 ccgtgcacgg aggcttcgcc ggattccctt taacgagccg ttcgctgttg tgcatccacg
      541 agttgttact gcgtaactgc cttcgcccga tcagcaacag ttcaccgttc gaagacgcaa
      601 cagcgccgtc gatcaacacc ttcttcaccc gcgcgatgtc cctaaccaga acctccggcg
      661 ccagatcgat gcgcttgtca ttcgtacgca atctctccgg caaacacggc ttcaacggcc
      721 cgagatcgat cccgtgcaca gcttgcttaa ccttccgcaa agtcagtcca ctcgaaaacg
      781 gattcaactt cgcgccgtat ggtccaaagc gcaaacccag atcgagaatt ctctccggcc
      841 caaggaatcg cgtagaccac ttgcgcaaaa ccgcgccgcg ttgccccttc cgatcgagac
      901 ggctttgcag ttcgctcagg atctgccagt catgcaaggt gtcatcagaa ggcgcaaaca
      961 acgccggtga aaacttcgcc gtgttgcgca ccgtcaggat attgaaagcc atatcgtagt
     1021 gtccgcgttc gagcgcagac gtcggcggca ggataatgtg cgcgtgcctc gtagtctcgt
     1081 tgatgtacgg atcgatcgac accatgaact ccagactcgc aagcgcgcgg tccaacttgc
     1141 gtccgttcgg cgtcgacaaa accggattgc ccgcgtaagt gacgagcgcc tttatctgtc
     1201 ccggcccttc agtgaggatc tcttcagcca acacggcaac cggcagctct cccgcaaact
     1261 ccggcaactc gcgcacgcgg ctgcgccaac gtccaaaacc tccacgcggc gctaacgact
     1321 ccggcgccgt gagcggatcg aacgccggca acgtgaacat cgcgccaccc ggccgatcga
     1381 gattgcccgt cacgatattc agcacgttaa tcaaccactg gcaaactgcg ccgaactcct
     1441 gcgtgctcac tccgattcgc ccgtgacaca ccgcagactc agccgtcgca aactctcgcg
     1501 cgagcacgcg tatggcattc gcgtcgattc ccg
//
LOCUS       DASWTX010000440         2922 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_157242, whole genome shotgun sequence.
ACCESSION   DASWTX010000440 DASWTX010000000
VERSION     DASWTX010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2922
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157242"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1164
                     /locus_tag="VGD38_06755"
     CDS             <1..1164
                     /locus_tag="VGD38_06755"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HEY0727747.1"
                     /translation="VIFTSLNGLPRGVRSSDLSGGKPGEDWMDPTQYARKQGAVATVI
                     IPDFQFMANWERNRQRLTERPPVVVDKFQPFDASRLPALVITPRIANLIFQGEKQNAT
                     ALFEATFGGVTPEPFELNPAKKLSMTISTQGDALGTQNVVAVLEGSDPVLKDEYVALG
                     AHYDHVGIGAPQKGDAIYNGADDDGSGTTALLAIAEALVKAPTRPKRSILFNWHAGEE
                     KGLWGSRYFTQYPTVPLEKIVAQLNIDMIGRSKKFGDTNPRNNSLSGPNEIYVIGSKM
                     MSTELGELTAKVNKEYLNLSYNYKYDDPKDPNRFFFRSDHYNYARKGIPIIFFFDGVH
                     EDYHRPGDTADKIDYQKMEKVTRTIYMTAWEIANRPERLKVDKPLPSQLGGTE"
     gene            complement(1167..2018)
                     /gene="rsmI"
                     /locus_tag="VGD38_06760"
     CDS             complement(1167..2018)
                     /gene="rsmI"
                     /locus_tag="VGD38_06760"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: protein motif:HMM:TIGR00096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEY0727748.1"
                     /translation="MAGTLYLVATPIGNLADITHRALQVLRDVDLIACEDTRHTHKLL
                     QHYGIDTKTISYHEHNEQQRAAELIELLKQGSDVAVVSDAGTPAISDPGFRLVRTAIE
                     NDVRIVPLPGPSALVSALVAAGLPTDEFFFGGFLPSRTGARRARLGELRDVPGTLIFY
                     EAPHRLAASLRDAHEVLGEREAVVARELTKLHEEIRRGRLSELAEYYSTVEPRGEIVL
                     LIDRTVLDQPDSEVAGTTSVAALVEQFEAAGLDHRAALKKAARELQLSRAEAYRRLLA
                     ERSDTHN"
     gene            complement(2140..2751)
                     /locus_tag="VGD38_06765"
     CDS             complement(2140..2751)
                     /locus_tag="VGD38_06765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727749.1"
                     /translation="MRKHTLKFSIMAAALVALSLPVVAAAQWGRDRYPDNRGGYGRYD
                     ERAVRDSAHRLDRLAKDFERDMDRALDRSRTNGTSREDRINEQVHQFRRAAGDFKSRV
                     GNGRDLNRSADEARRMLQEAQQVDRVARPRWYDGRLSSQWSAIQRELRFISDVYGFRY
                     DGGFGRNDDWRRDDDYRRDDDYRRRRDDRDRNNDWWRRIPFPQ"
BASE COUNT          654 a          843 c          816 g          609 t
ORIGIN      
        1 gtcatcttca cttcattaaa cggattgccg cgaggcgttc gctcatcgga cctcagcggt
       61 ggcaagcccg gcgaggattg gatggaccct actcaatatg ctcgcaagca gggcgcagtt
      121 gcgacagtca taatcccgga ctttcaattc atggctaact gggagcgcaa ccgccagcga
      181 ctcaccgagc gtccgcctgt agtggttgat aaatttcaac cattcgacgc ttcgcgtcta
      241 ccggccctcg tcataacgcc gaggattgcg aatcttatct tccagggtga gaaacaaaac
      301 gcaaccgcac tcttcgaggc gacgtttggc ggtgtaaccc ccgaaccgtt tgaattgaac
      361 ccagctaaga agctgagcat gacgatcagt actcagggag atgctctcgg gactcagaac
      421 gtggtggcag ttctagaagg aagtgatccg gtactcaaag atgaatacgt ggccctgggc
      481 gcgcactacg accacgtggg cattggggcg ccgcagaaag gagatgcgat ttacaacggt
      541 gcggacgacg atggctcggg aaccacggct ttgttggcca tcgcggaagc gctggttaaa
      601 gcgccaacca gaccaaagcg atcaattctt ttcaactggc atgctggtga agaaaaagga
      661 ttgtggggct ctcgttactt cacacaatat ccgactgttc cgctagaaaa aatcgtggcc
      721 caacttaata tcgatatgat tggacggagt aagaagtttg gcgacactaa ccctcgtaat
      781 aactccctct ccggcccgaa tgaaatttat gtgattggct caaaaatgat gagtacggaa
      841 ctgggtgagc tgactgcgaa ggtaaacaaa gagtatttga atctaagtta taactacaaa
      901 tacgacgatc cgaaagatcc taaccgcttc ttctttcgca gcgatcatta caactacgcg
      961 cgcaagggca ttccgatcat cttcttcttc gacggcgtgc acgaggatta tcatcgtccc
     1021 ggcgacacgg cggacaagat cgactaccag aagatggaaa aggtcacgcg cacgatctac
     1081 atgacggcgt gggagattgc gaaccgcccg gaacggctca aggtagataa acccttgccg
     1141 tcgcagttgg gcggcacgga gtaatttcaa ttatgggtgt cgctgcgttc ggcgaggagg
     1201 cggcggtagg cttcggcgcg tgagagttgt aactcacgcg ccgctttctt tagagctgcg
     1261 cgatggtcca ggccggctgc ttcgaactgt tccacgagtg cggcgacgct tgtggttcca
     1321 gccacctccg aatcaggttg gtccaacacc gtccggtcaa tcaacaaaac gatctcgcca
     1381 cggggctcaa ccgtcgaata gtactcagca agctcactca atcgcccgcg cctgatctct
     1441 tcgtgcaact tcgtcaactc gcgcgcaaca acagcttcgc gttcacccaa aacctcatgc
     1501 gcatccctga gactcgccgc aagccggtgc ggcgcttcat aaaagatcag cgtacccgga
     1561 acgtctcgca actcgccgag ccgcgcacgc cgcgcgcccg tgcgcgacgg caaaaacccg
     1621 ccaaagaaaa actcgtccgt cggcaatccc gcagccacca acgccgagac gagcgcactt
     1681 ggcccaggca gcggcacgat cctaacgtcg ttctcgatcg ccgtgcgcac caatctaaac
     1741 ccgggatcgc tgatcgccgg tgtgcccgca tcggaaacaa cggcgacgtc gcttccctgc
     1801 ttcagcaact cgatcaattc cgccgcgcgt tgctgttcgt tgtgctcgtg atagctgatc
     1861 gtcttcgtgt cgatgccgta gtgctgtagc agcttgtgcg tgtgccgcgt gtcttcacac
     1921 gcgatcagat cgacgtctcg taaaacctgc aaagcgcgat gcgtgatgtc cgcgaggttt
     1981 ccgatcggtg tcgcaacgag ataaagggtg ccggccatgt gcttcacaaa aaagcacaac
     2041 cgcaccgaaa gggcaaaggc cccggtgttg ccgaggcctt cgaaaggaag tcttaaagaa
     2101 cgggtaggtt acgggcggtg tcgggttcaa gcagtgaaat tactgaggga atggaattct
     2161 tcgccaccaa tcgttgttac gatcgcggtc atcgcgccgg cggcggtagt cgtcatcgcg
     2221 gcgatagtcg tcgtcacggc gccagtcgtc gttacggcca aagccgccgt cgtacctgaa
     2281 accgtagacg tcgctgatga atcgcagttc gcgttgaatc gccgaccact gcgacgacaa
     2341 acgaccgtcg taccagcgcg gccgcgcgac gcgatcgact tgctgcgctt cctgcaacat
     2401 cctgcgtgct tcgtcagcac tacgattcag gtcgcggccg ttgccgacgc gagatttgaa
     2461 atcgccggct gcgcgacgaa actgatgaac ttgttcgttg atgcgatctt cgcggctggt
     2521 gccgtttgtg cggctgcgat ccagcgcgcg gtccatgtcg cgttcgaagt ctttggctaa
     2581 acgatcgagc cggtgagctg agtcgcgtac ggcgcgctcg tcgtagcgtc cataaccgcc
     2641 gcgattgtcc ggataacgat ctcgtcccca ttgagcagcc gctacgaccg gcaggctgag
     2701 cgccaccaac gccgcagcca tgattgaaaa cttcagtgtg tgcttcctca ttttcttgtc
     2761 tcctcagaag tcatcgggcc tggggaatga tcctcagcca gcgagtttcg ctgtggcact
     2821 ggttggcaag tgttgtgcct ttgtaccccg ccgcgagaaa gcctttaatt ttccgccgga
     2881 aatccgccgt ctggcctacg cgtaacgcca aaaggtgcac gc
//
LOCUS       DASWTX010000441         2102 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_289400, whole genome shotgun sequence.
ACCESSION   DASWTX010000441 DASWTX010000000
VERSION     DASWTX010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2102
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289400"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..803)
                     /locus_tag="VGD38_06770"
     CDS             complement(<1..803)
                     /locus_tag="VGD38_06770"
                     /inference="COORDINATES: protein motif:HMM:NF025875.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HEY0727750.1"
                     /translation="MTRLLFLNLCFLCSSVAFTAQGPETDYSKFRHGSARHRSLACTS
                     CHERTDNSATPRFPGHKACTDCHRGQFTTPAIPMCVICHTDTKSSNPPLKSFPASFNE
                     PFNVKFDHAQHMTGAARPQAGCAGCHNSPVNRRAGLSIPANLAAHNNCYTCHTPTSRS
                     NAGREIGSCGVCHDQKPYRPTSTNARAFRYAFSHADHGNRQRLACADCHKVTAGAPQT
                     RQVRSTNAAQHFNTTRGQTCATCHNGRRTFGGDLGFGDCKRCHSGPTFR"
     gene            complement(800..1576)
                     /locus_tag="VGD38_06775"
     CDS             complement(800..1576)
                     /locus_tag="VGD38_06775"
                     /inference="COORDINATES: protein motif:HMM:NF014176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HEY0727751.1"
                     /translation="MSCHRAQFFRGARPPICSVCHVKTGPRDEARLAFRNPASKLQFT
                     IEFPHDRHQDVIALRHSSPWRSKLLAHAPPQQNFNNCTICHAPASAASTPPAGGWLDA
                     YAPPAATFKASPSDHSACFSCHWKSQEPVATDCNGCHKLATPYVAAAIPTRISLKFMH
                     DGGGEKKQHVAECTTCHINITKSATLRGLKPDVPITACTECHNKDGLRQDLNTELAAL
                     DKNRAFTCVYCHTSNVGKLDAPASHYLIAQRPPLKRRDIK"
     gene            complement(1759..>2102)
                     /locus_tag="VGD38_06780"
     CDS             complement(1759..>2102)
                     /locus_tag="VGD38_06780"
                     /inference="COORDINATES: protein motif:HMM:NF037639.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SpaA isopeptide-forming pilin-related protein"
                     /protein_id="HEY0727752.1"
                     /translation="RKWLTTNVPANLRDGFYRDRKGVIDTLLKQAGAAVQSVMTDRNG
                     TAFFTDLTPGTYVITNLVPTELGQSLATWNCELQIKPDDLAAEKPYLISNRKDRLVKC
                     VATEKPAPPCQ"
BASE COUNT          380 a          508 c          731 g          483 t
ORIGIN      
        1 atacggaaag ttggaccgga gtgacagcgc ttgcagtcgc cgaagccgag atcgccgccg
       61 aaggtccgcc tgccgttgtg acacgtcgca caggtctggc cgcgagtggt gttgaaatgt
      121 tgggccgcat tcgtggacct gacctgtcgc gtttgcggcg cgccggcggt gactttgtgg
      181 cagtcagcgc aggcgagtcg ctgccggttg ccgtggtccg cgtggctgaa agcgtaacga
      241 aacgcgcgcg cgttggtgct cgtcgggcga tacggtttct gatcgtgaca gacgccgcac
      301 gagccgatct cgcgccctgc gtttgaacgg ctggtgggcg tgtggcacgt gtagcagttg
      361 ttgtgcgcgg cgagattcgc gggaatcgag agtccggcgc ggcggttcac cggcgagtta
      421 tgacaaccag cacagccagc ctgcgggcgc gccgcgccag tcatgtgttg cgcgtgatcg
      481 aacttcacat tgaacggctc gttgaagctc gcggggaaac tcttcagcgg cgggttgctg
      541 ctcttcgtgt cggtatgaca gatcacgcac atcgggatcg caggcgtcgt gaactgcccg
      601 cgatgacaat cagtgcacgc tttgtgaccg gggaaacgcg gcgtcgcgga gttgtcggtg
      661 cgctcgtgac acgacgtgca ggcgagcgag cgatgccgtg cgctgccgtg tcgaaattta
      721 gaatagtcag tctccggtcc ttgcgcggta aaggccacgg atgaacacag aaaacacaga
      781 ttgaggaaga ggagtctagt cattttatgt ctctgcgttt tagtggagga cgctgggcga
      841 ttagatagtg gctcgccggt gcgtcgagct tgccgacgtt ggaagtgtgg caatagacgc
      901 aggtgaacgc gcggttttta tcgagcgccg cgagctcggt gttgagatcc tggcgcagtc
      961 cgtccttgtt gtgacattca gtacatgccg tgatcggcac atcgggtttc aggccgcgca
     1021 aggtggctga cttggtgatg ttgatgtgac acgtcgtgca ttctgcgacg tgctgtttct
     1081 tctcgccgcc gccgtcgtgc atgaacttga gcgagatcct ggtcgggatc gcggcggcaa
     1141 cgtatggtgt cgcgagtttg tgacaaccgt tgcagtcggt cgcgaccggt tcttgtgact
     1201 tccagtgaca actgaaacac gcagagtgat cggaggggga tgctttgaac gttgcggctg
     1261 gtggcgcgta ggcgtcgagc cagccgccgg cgggcggcgt ggaagctgcg gatgccggcg
     1321 catggcagat ggtgcagttg ttgaagtttt gctgtggcgg cgcatgggcc aggagttttg
     1381 atcgccacgg actcgagtgt cgcaaggcga tgacgtcctg gtgccggtcg tgcggaaact
     1441 cgatcgtgaa ttgaagcttc gatgcggggt tgcggaaagc gaggcgagct tcgtcgcggg
     1501 gacccgtttt tacgtgacag acagagcaga ttggcggccg cgcgccgcgg aagaattgcg
     1561 cgcgatgaca gctcacgcag gcgttgtgat ccgggtaatc ggttatgtcg gggaaggtag
     1621 aagctttggt ccagtctttg gttggtattt tgtgacaggt gttgcaggct gacttgtgtt
     1681 tgggtgttga atgggaaaac ttggtgtagt caacagcggg ttgaagccag attaaaatca
     1741 agatgtaaaa acccaatttc attggcatgg tggtgctggc ttctcggtcg cgacacactt
     1801 caccaaccgg tctttgcggt tggagatcaa gtagggtttt tcggcggcca gatcgtcagg
     1861 cttgatttgc agttcgcagt tccatgttgc gagcgactgg cccaactcgg ttggaaccag
     1921 gttcgtgatg acgtaagtgc ccggggttag atctgtgaaa aaggcagtgc cgttgcgatc
     1981 ggtcattacg gattgaacgg cggcgcctgc ttgtttgagc aatgtgtcga tcacgccttt
     2041 gcgatcgcga tagaaaccgt cgcgcaaatt tgccggcacg tttgtcgtca gccatttgcg
     2101 tg
//
LOCUS       DASWTX010000442         2498 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_289411, whole genome shotgun sequence.
ACCESSION   DASWTX010000442 DASWTX010000000
VERSION     DASWTX010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2498)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2498)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2498
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289411"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            83..1042
                     /locus_tag="VGD38_06785"
     CDS             83..1042
                     /locus_tag="VGD38_06785"
                     /inference="COORDINATES: protein motif:HMM:NF018024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1028 domain-containing protein"
                     /protein_id="HEY0727753.1"
                     /translation="MRLVFLLLAAFIFLPTASHQTKPTRPVHTFSIVARDPNTGELGV
                     AVQSHWFSVGPIVAWAEAGVGAIATQSFVDPSYGKNGLDLMRNGKSAPDTLKELLAKD
                     EGREVRQVAMIDAQGRVEAWTGKNDIQAAGHIVGENFSVQANLMLNDKVWPAMARAFE
                     NTRGDLADRMLAALDAAQAAGGDIRGRQSAALIVVTGKPTGQAWKDRTFDLRVDDSPE
                     PLKELRRLVRLQRAYNHMNAGDLAVEKKDNEGALREYSAAERLVPDNAEMIYWHAVAL
                     VNMGRVDESLPLFRKVFAMDPNWITLTPRLPKSGLLPDDPKAY"
     gene            1186..1392
                     /locus_tag="VGD38_06790"
     CDS             1186..1392
                     /locus_tag="VGD38_06790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727754.1"
                     /translation="MRSLTPGQWYLRFTCEQCEAKQILFADLSHGEARIRATYVVECS
                     ICLHKGAYDGDDIERYQHPLDQEP"
     gene            complement(1395..>2498)
                     /locus_tag="VGD38_06795"
     CDS             complement(1395..>2498)
                     /locus_tag="VGD38_06795"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HEY0727755.1"
                     /translation="TAGQLIVGRGVKVQGVSADSPLAKAVFHTRTVKQPTTIKDGDTV
                     WAVDGKSVQNPDELATALAAGSGVAKVRIYRVEWMPELEVPRGQLLPGASALEQLGIS
                     DWTRGRDWRATGFYGHWVTYAEVLQLIASLALGLFLTLPQKKSLLGWLLLAAVVGLVF
                     ALGMTVTRASWIGFAVSVAVMLMLSVSRRTLLIAGACAIPLVLGGLILLQQKRNVGLI
                     DSQDQSTSWREMVWREGFDLLVSNPRHLLVGVGMDSIKGHWREWRLFDEGRQPIGHMH
                     SNLLQIALERGVPALIIWLLLMAVYARLLIGIIHASVDLPEARGVALGAFGGLAGFFV
                     SGVVHYNWGDSEVVTVFYLIMGMSLVLERTLRR"
BASE COUNT          577 a          811 c          630 g          480 t
ORIGIN      
        1 tatgcgctct tcttcgtgtt gatgggtttc tggatctttc gcaacacgcc gttctatccg
       61 tttgtttcgt agcgaggtca agatgagatt ggtttttctt ttattagccg cctttatttt
      121 cctcccaacg gcctctcacc aaacgaaacc cacgcgcccg gtccacacct tctccatcgt
      181 cgcgcgtgat ccaaacaccg gcgaactcgg ggttgccgtc caatcccact ggttctccgt
      241 cggcccgatc gtcgcctggg ccgaagccgg tgtcggcgcg atcgccacgc aatcattcgt
      301 cgatcccagc tacggcaaaa acggtctcga tctaatgcgc aacggcaaaa gcgcccccga
      361 cacactcaaa gaactcttag ccaaagacga aggccgcgaa gtacgccagg tcgcgatgat
      421 cgacgcgcag ggacgcgtcg aagcgtggac cggcaagaac gacatccagg ccgccggtca
      481 catcgtcggc gaaaactttt ccgtgcaagc caacctcatg ctcaacgaca aagtttggcc
      541 cgcgatggcg cgcgctttcg aaaacacacg cggcgatctc gccgatcgaa tgctcgccgc
      601 actcgacgca gcgcaagccg ccggcggcga cattcgcggg cgccaatccg ccgcgttaat
      661 cgttgtcact ggaaaaccga ccgggcaggc gtggaaagat cgcacgttcg atctgcgtgt
      721 cgacgacagc ccggaacccc taaaagaact gcgccgtctc gtgcgtttac aacgggccta
      781 caaccacatg aacgcaggcg atctcgccgt tgaaaagaag gacaacgaag gcgcactgcg
      841 cgagtattcg gcagccgaac ggctggttcc ggacaacgct gaaatgattt attggcacgc
      901 ggttgcgctg gtgaacatgg gtcgcgtaga cgagtcgttg ccgctgtttc gcaaggtctt
      961 tgcgatggac ccaaactgga tcacgctcac gccgcggctg ccgaaatcgg gccttttgcc
     1021 ggacgatccc aaagcttatt gaacgcatcg tttccgccgg aaaaactcgg tcaaaaagac
     1081 gttgattgtt atcttgacgc ctgccaagtt gtcgcttata aagaggtcac tgattcgccc
     1141 cattccctca tcgccctaag ttttccgagc tgaggtttaa tcaggatgcg cagtctaacc
     1201 cccggacagt ggtatcttcg tttcacctgc gagcaatgtg aggcgaagca aatactgttc
     1261 gcggaccttt cgcatggcga agccagaatt cgcgcgacgt acgtcgtgga gtgctccatc
     1321 tgtctccaca aaggcgcgta cgacggcgat gacatcgagc gttatcaaca ccccttggac
     1381 caggaacctt gacctcaccg tcgtaaggtt ctttccaaca ccaggctcat acccatgatg
     1441 aggtagaaga ctgtcacgac ttcggagtcg ccccagttgt agtggaccac gccgctgacg
     1501 aaaaagccgg cgagaccacc aaatgcgccg agcgcgacgc cacgcgcttc tggcaaatca
     1561 accgaggcat gaatgatgcc aatcagcagt cgcgcataaa ccgccatcag caacagccaa
     1621 ataattaacg ctggcacgcc gcgctcgagc gcgatttgca gcaggttcga gtgcatgtga
     1681 ccgatcggct gtcggccctc atcaaacaag cgccactcgc gccaatgacc cttgatcgaa
     1741 tccatgccca cgccgaccaa cagatgccgt ggattgctga cgagtaaatc aaacccttcg
     1801 cgccagacca tttcacgcca gcttgttgat tggtcctgtg aatcgatcaa tccgacgttg
     1861 cgtttctgct gtaaaagaat cagaccaccg agcacgagcg gaatcgcgca cgcgccggcg
     1921 atcagcaacg tgcgtcgcga cacgctcaac atcagcatca ctgcaaccga aaccgcgaag
     1981 ccgatccacg acgcgcgcgt caccgtcatg ccgagcgcaa acacaagccc gacgaccgca
     2041 gcgagcagca accatcccaa caaactcttc ttctgcggca acgtgagaaa caatcccaac
     2101 gccagcgacg cgatcagttg caacacttcc gcataagtta cccaatgccc ataaaaaccc
     2161 gtcgcgcgcc agtcacgccc gcgtgtccaa tcgctaatcc ccaactgctc caacgcgctt
     2221 gcgcccggca gcaattgccc acgcggcact tcaagttccg gcatccactc gacccgataa
     2281 atccgaacct tcgccactcc ggaaccagca gccagcgccg tcgcgagttc atctggattt
     2341 tggacggact ttccgtctac ggcccataca gtgtcgccat ccttgatcgt cgtgggctgt
     2401 ttcacagtcc tcgtgtggaa aaccgctttc gccagcggac tgtccgcact cacaccctgc
     2461 acttttacac cacgcccaac gatcaactgc cccgcggt
//
LOCUS       DASWTX010000443         2941 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_72061, whole genome shotgun sequence.
ACCESSION   DASWTX010000443 DASWTX010000000
VERSION     DASWTX010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2941
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72061"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            297..1313
                     /locus_tag="VGD38_06800"
     CDS             297..1313
                     /locus_tag="VGD38_06800"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY0727756.1"
                     /translation="MKFSVVIATYNRADELVRTLDSLRGLQAPDPWEVIIVDNNSKDN
                     TREVVLKAAENYPVPLRYVHESQQGRSAALNAGIKAAQGEIIAVTDDDVRVEPDWLTN
                     AERAFEQLGCDYLGGKALPLWGGERPSWIPETRCMHWAVIALLDYGPKPMPFGDNVPL
                     GVNMIFRREAFERAGLWDNAIGRKAGTLLGQEVREWTQRARAAGLKGFYSPDLVVHHV
                     IPADRLQKKYFRSWFYWHGISRAMLYRSGGLDMENPESTELDFSTVPHIAGVPRYMFR
                     TYLQSVFSMISAFVRGDRTTAFEKELTVWFFAGVLKERWKDRRAPIPPRRDLVALRDS
                     SVKQ"
     gene            1310..2056
                     /locus_tag="VGD38_06805"
     CDS             1310..2056
                     /locus_tag="VGD38_06805"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocholine cytidylyltransferase family
                     protein"
                     /protein_id="HEY0727757.1"
                     /translation="MKAIILAAGKGTRLNGVELKPKCLFEVGGATLLQRQMSAIEEAR
                     IDQVVLVLGFEAERIKRHCGPNVEYVTNERFGETSSLYSLWLAKEHLTDGFVVLNCDV
                     LFHPDLLTRLLTAPHADALLVDFVDKQNNQLGDEEMKVKVSDGRVVDISKRMNPAEAD
                     GENVGVVKFSREGATRLIAEMDRLISSGDCDRDWAPRAFREFALRYPLHAISTDNYPW
                     IEIDFPEDYRRAQEEVFPQINAMVPAPAAK"
     gene            2089..>2941
                     /locus_tag="VGD38_06810"
     CDS             2089..>2941
                     /locus_tag="VGD38_06810"
                     /inference="COORDINATES: protein motif:HMM:NF016357.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0047355 - CDP-glycerol
                     glycerophosphotransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HEY0727758.1"
                     /translation="MDKRFQRIRDAEKRRVLVDSRTAMNYATVAPIVLGLQKDPRIEV
                     FLTASETPDLLDKIYAEARQPYHLVRPKAAAFMQFDAYLAADFLWARLPRGTHRVQTF
                     HGVAGKYRTVYDSPDKSMRDWHRLFFINKRRMQNFIDTGAIDADSPAIRLVGMPRLDC
                     LVDGSLQRDEILMSLGIDPARKTVLYAPTWSRYSSVATMGEEIVKRLGEAGFTVIVKL
                     HDRSRQTDDYHSGGVDWGQKLLPLLEANGGVLATGSNSSEYLMAADVLITDHSSVGFE
                     YLLLDRPL"
BASE COUNT          602 a          702 c          935 g          702 t
ORIGIN      
        1 ctttatgttc tacttggatc gcgcaaacga aagcccaatc agtccaccac ggctgtcggg
       61 gtgaccgggg ccctcgctgt ctttaagttc ggaaaacctg tagcaaacgg cacaccgcaa
      121 tcccggaggg ggcggcctcg gtttttccta actaagttga aggaccaggg attctatcat
      181 gtcttgtatt gggacaggcg tctggttttt ggaaggtata agtacatcaa tcgtttattt
      241 gttacggacg aagatgtacc ttagcttcat gtgttagagt tcgcaccaaa aaccttatga
      301 agttttctgt tgtcattgcc acctataacc gagccgacga gctggttcgg acgcttgatt
      361 cgctgcgcgg gcttcaggcg ccggacccgt gggaagtgat cattgtcgac aacaattcga
      421 aggacaacac ccgcgaagta gtgctcaaag ccgcggaaaa ctacccggtc ccgcttcgtt
      481 acgttcacga atcacaacag ggccgttcag ctgccttgaa cgcgggaata aaagccgcac
      541 agggcgaaat catcgcggtc acggacgacg acgttcgcgt cgaacctgac tggttgacca
      601 acgccgagcg tgctttcgag cagttgggtt gtgactatct tggcgggaag gcgctgccgc
      661 tttggggcgg cgagcgtccg tcgtggattc cggaaacgag gtgcatgcac tgggccgtga
      721 tcgcgttgtt ggattatggt ccgaaaccga tgccgttcgg cgataacgtg ccgctgggcg
      781 ttaatatgat cttccggcgc gaggcttttg agcgcgcggg attgtgggac aacgcaatcg
      841 gacgcaaggc aggcacgttg ttggggcagg aagtcaggga gtggacccaa cgtgcccgcg
      901 ccgcgggtct gaagggtttc tattcacctg acctggtggt tcatcatgtg attccagcgg
      961 atcgattgca gaagaagtac tttcgcagtt ggttttactg gcatggaatc agccgcgcga
     1021 tgctttaccg gagcggaggg ctggatatgg aaaatccgga aagcacggag ttggacttca
     1081 gtacagtccc gcacatcgcc ggtgtcccgc gttacatgtt ccgcacatat ctgcaatcag
     1141 tcttttctat gatttccgct tttgttcgcg gcgatcgcac caccgctttt gaaaaggagc
     1201 tgactgtttg gttctttgcc ggcgtattga aggaaagatg gaaggaccgg cgcgcgccaa
     1261 ttccaccgcg tagagattta gttgcgctgc gagatagttc agtaaaacaa tgaaagcaat
     1321 catactcgcc gccggcaaag gaacacgtct aaacggcgtc gagctcaagc cgaaatgtct
     1381 gtttgaagtt ggcggcgcaa cgctgttgca gcgccagatg tccgcgattg aggaagcgcg
     1441 gattgatcag gtcgtgctgg tgcttggttt tgaagccgag cggatcaagc gtcactgcgg
     1501 accgaatgta gagtatgtga cgaacgagcg ttttggcgag acgagcagtc tgtattcact
     1561 gtggctggcg aaagaacatc taactgatgg cttcgtcgtg ttgaattgcg acgtgttgtt
     1621 tcatccggac ttgctgacgc ggttgctgac ggcgccgcac gcggatgcgc tgctcgtgga
     1681 ttttgtcgac aagcagaaca atcaactcgg cgacgaagag atgaaagtga aagtcagcga
     1741 cggtcgcgtc gtcgacatca gcaagcgcat gaaccctgcc gaggctgacg gcgagaacgt
     1801 cggcgtggtg aagtttagcc gcgagggcgc gacgcgactg attgctgaga tggaccggct
     1861 gatttcgagc ggcgactgcg atcgcgattg ggcgccgcgc gcgtttcgtg agtttgcttt
     1921 gcgttatccc ttgcacgcca tcagcaccga taattatccg tggatcgaga tcgattttcc
     1981 tgaagattat cgccgggcgc aggaagaggt ctttccccag atcaacgcga tggtcccggc
     2041 tcctgctgct aaatgatctc ccgaagctct atcgagtggt tgcgcggttt ggacaaacgt
     2101 tttcagcgga ttagagacgc tgagaagcgc cgcgttctgg tcgatagccg aacggcgatg
     2161 aactatgcga cggtcgcgcc gatcgttttg ggtttgcaaa aggacccgcg tatcgaggtg
     2221 tttttgacgg cgagtgagac gccggatttg ctcgacaaga tctacgcgga agctcgacag
     2281 ccgtatcatc tcgttcggcc gaaggcggct gcgtttatgc agtttgacgc ttatctggcg
     2341 gctgattttt tgtgggccag gctgccgcgc gggacgcatc gcgtgcagac gtttcatggt
     2401 gtggcgggga agtatcgaac ggtttacgac tcgccggaca agtcgatgcg cgattggcac
     2461 cggttgtttt ttattaacaa gcggcggatg cagaatttta tcgatacggg cgcgatcgac
     2521 gcggatagtc cggcgattcg gttggttggc atgccgcgat tggattgtct cgtcgatggt
     2581 tcgttgcagc gtgatgaaat tttgatgtcg ctggggatcg atccggcgcg gaagacagtt
     2641 ttgtatgcgc cgacgtggtc caggtattcg tccgtggcga cgatgggtga agagatcgtg
     2701 aagcgtttgg gtgaggcggg gttcacggtg atcgttaagc ttcacgatcg ttcgcggcag
     2761 acggatgatt atcattcggg cggcgtcgat tggggacaga agcttttgcc gctgctcgag
     2821 gcgaatggcg gcgtgctggc gacgggcagc aactcttctg agtatttgat ggccgcggat
     2881 gtgctgatca cggatcatag ctcggtcggg tttgagtatt tgttgttgga tcggccgttg
     2941 a
//
LOCUS       DASWTX010000444         2523 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_289442, whole genome shotgun sequence.
ACCESSION   DASWTX010000444 DASWTX010000000
VERSION     DASWTX010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2523
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289442"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..421
                     /locus_tag="VGD38_06815"
     CDS             <1..421
                     /locus_tag="VGD38_06815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727759.1"
                     /translation="NRGSYWFRKYYVVKEQYSKEDRSALTEAEGQYYDFIAKFAKETN
                     TIGLLADAEFYLALVYLQQGKREYAVGWLNRMLSEAVKEDSSVYVYKVVWSSKPGDIV
                     DRNVNAAQLANYARQVIQKGGDTDAVILDIKRWCQKQ"
     gene            complement(557..1003)
                     /locus_tag="VGD38_06820"
     CDS             complement(557..1003)
                     /locus_tag="VGD38_06820"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEY0727760.1"
                     /translation="MNLGGEFQSLELSSFSKADWRDFLAEHFDTSEFGGIEQFEGNNG
                     WHLGFVKNGKFGIVATNNSRFVESGGKSVSGNNGNNGSNGKRIGFSVAQTNGQKFGLF
                     NNPRRSMPSVTENPEPTAMLLLGTGLAGVAAFARRKIRRRKGVDVQ"
     gene            complement(1259..>2523)
                     /locus_tag="VGD38_06825"
     CDS             complement(1259..>2523)
                     /locus_tag="VGD38_06825"
                     /inference="COORDINATES: protein motif:HMM:NF013239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TIM-barrel domain-containing protein"
                     /protein_id="HEY0727761.1"
                     /translation="QGLERNFFQRRSNGDLFVPRVWPGDSVFVDYTLPDARRWWGDLH
                     RVYTDNGIAGIWTDMNEPADFVDQTGKNQLDVVSYDEGEKTTHAKNRNTIALLMSRAT
                     YEGLERLRPDQRPYVITRAAYAGIQRYSTMWTGDTNSTWEALALNIPMFTSLGLSGEP
                     FVGSDVGGFIGRGNGELLVRSYQVGFLAPFFRNHKVIDGYDQEPWRFGKYYEDIIRKY
                     LKLRYQLLPFLYTTLEESHRTGVPLFRPLLLNYQNDASTWNLDDQFMVGEDVLVAPIM
                     KPDVTRRLVYLPAGTWYDYWTNKKHTGGTMITVDAPLNTVPMFVRAGAMIPTVPPRNY
                     VGEQPSDPVTFNIYPDDKGLASGKLYEDDGTSPAYKRGMFRRTSVSARRNGRAFVATI
                     DATEGQYNPGARKLNFVVAGSTERVQQR"
BASE COUNT          555 a          706 c          708 g          554 t
ORIGIN      
        1 caaccgcggc agttactggt tccgcaagta ctacgtagtg aaggagcaat actcgaaaga
       61 ggatcgctcc gcgctgaccg aagccgaagg gcagtactac gacttcatcg ccaagttcgc
      121 caaagagacc aacacgatcg gactcctcgc ggatgcagag ttctacctcg cgctggttta
      181 tttacagcaa ggcaaacgcg aatacgcagt tggttggctc aaccggatgc tgtcggaagc
      241 ggtgaaggaa gacagttcgg tttacgtgta caaggtggtg tggtcttcga agcccggaga
      301 catcgtcgac cgcaacgtga acgcggcgca gttggcaaac tacgcgcgcc aggtcataca
      361 gaaaggcggc gatacagacg ccgtcattct cgatatcaag cgctggtgcc aaaaacagta
      421 acgctagcca caagaggcac aaaagtcaca aaggttcgtt ttgagttcag cctttaggct
      481 gcaagtacgc tagcttcacg aacgacaagc taaagcttga actcaaaact ttcttgtgct
      541 tctttgcggc gcgtctttat tgaacgtcga ctcctttacg gcgccggatt ttcctgcgcg
      601 caaatgccgc gacgcctgcc aagccggtgc ctaacagaag catcgcagtt ggttccggat
      661 tctcggtcac agacggcatc gaccggcgcg gattattgaa cagcccaaac ttctgaccgt
      721 tagtctgcgc cacactgaac ccgatacgct taccgttact gccgttatta ccgttgttac
      781 cgctaacgct cttcccgcct gattcgacaa acctgctgtt gttagtggca acgatgccga
      841 acttgccgtt tttcacgaac ccaagatgcc aaccattgtt gccctcgaac tgttcaatcc
      901 cgccaaactc cgaggtgtca aagtgctcgg ccaaaaaatc ccgccagtct gctttggaga
      961 aactcgaaag ctccagtgat tgaaactctc ctccgagatt caacttctgc agcgcctttg
     1021 gggtgtgaac cgaatcggcc cgaactgatg taacgagtgt gattaggaaa atcgcactca
     1081 cagcgagtgt aagaaccctt ggtctgttca tacttgtccc tggaacgttg agatcgtctc
     1141 cgcacgctag ggggcactaa aggggatgtc catcaacaac cgggcgggtc gtgacaaaat
     1201 agttttaagg tgttgggaaa ctgtcaccga cttgcaacat ctatgttatg tagccgactc
     1261 atcgctgttg aactcgttct gttgaacccg caacgacgaa gttgagcttc cgcgcgcccg
     1321 ggttgtactg gccttcggtc gcatcgatag tcgccacaaa cgcgcgcccg ttgcgccgtg
     1381 cgctgacgct cgtgcgccga aacatgccgc gtttgtaagc cggactagtc ccgtcgtctt
     1441 cgtaaagctt gcccgaagcg aggcctttat cgtccggata gatgttgaac gtgacgggat
     1501 ctgacggctg ttcgccgacg tagttgcgcg gtggaacggt ggggatcatc gcgcccgcgc
     1561 gtacaaacat cggcacggtg ttgagcggcg catcaacagt gatcatcgtg ccgccggtgt
     1621 gtttcttgtt tgtccagtag tcgtaccacg tcccggcagg tagataaact aggcgccgcg
     1681 tgacgtcggg tttcatgatc ggcgccacga gcacgtcctc gccaaccatg aactggtcgt
     1741 cgagattcca ggtgctcgcg tcgttctggt agttcagtaa taaaggacgg aacaacggca
     1801 cgcccgtgcg atgcgattct tcgagcgtcg tgtagagaaa cggcagcagt tgataacgca
     1861 gcttgagata cttgcgaatg atgtcttcgt aatacttgcc gaagcgccac ggttcctgat
     1921 cgtagccgtc gatcactttg tgattgcgga agaacggcgc gagaaaaccc acctggtacg
     1981 aacgcaccag caactcgcca ttgccgcggc cgataaagcc gccgacgtcg ctgccgacaa
     2041 acggctcgcc cgaaaggccg agcgacgtga acatcggaat gttcaatgca agcgcttccc
     2101 acgtgctgtt agtgtcgccg gtccacatcg tcgagtaacg ctgaatccca gcgtatgctg
     2161 cgcgcgtgat cacgtaagga cgctgatcgg gacgaaggcg ctcgagtcct tcgtaagtcg
     2221 cacgcgacat cagcaaggca atcgtgttgc ggttcttcgc gtgtgttgtc ttctcgcctt
     2281 cgtcgtagct gaccacgtcc aactggttct tgccggtctg atcgacgaag tctgcgggct
     2341 cgttcatgtc ggtccaaatg ccggcgatgc cgttgtcggt gtagacgcga tgcaggtcgc
     2401 cccaccagcg gcgcgcgtcg ggaagcgtgt agtcgacgaa gacgctgtcg cccggccaca
     2461 cgcgcggcac gaataagtcg ccgttgctgc ggcgttggaa gaagtttcgt tcgaggcctt
     2521 gtt
//
LOCUS       DASWTX010000445         2217 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_200138, whole genome shotgun sequence.
ACCESSION   DASWTX010000445 DASWTX010000000
VERSION     DASWTX010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2217)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2217)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2217
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200138"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1183)
                     /locus_tag="VGD38_06830"
     CDS             complement(<1..1183)
                     /locus_tag="VGD38_06830"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY0727762.1"
                     /translation="MPSSPEVCPFVVCPHTNSVFRRLILSSFLLLVLISVNSSVVSAQ
                     SPTATLTGTVTDQNDAVVPGVNIAVISIAQGFQRSTITDDEGAFVVPLLPAGNYTVKA
                     EREGFSPAEARDVILNVNDRVALRIQLKVGSVNSQTVDVIDTPALLDQSPAVGTTVDR
                     QFVANLPLNGRSFQSLIALTPGVVMVPGSSVNNVGQFSVNGQRANANYFMVDGVSANT
                     GNGAGAVPGQATSGTLPGLTTFGGTNSMVSVEAMQEFQVQTSTYSAEYGRAPGGQISI
                     VTRSGSNEFHGSLFDYIRNDKFDANDWFANRAQQARPPERQNDFGGTFSGPLLLPRFG
                     EGGSQPWYDGRNKTFFFISYEGLRLRTPKFALTNVPSINLRQTANPAMRPILQAFPLP
                     NG"
     gene            complement(1297..>2217)
                     /locus_tag="VGD38_06835"
     CDS             complement(1297..>2217)
                     /locus_tag="VGD38_06835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727763.1"
                     /translation="EVLPARDVPANVFEIERELVKEVNGGAVAPRNSGPSAPTPVTAS
                     TELEIDVAYLLSQAKADRNEQVALTRSASGSLRVEGIVDTAERRDEFLRALRPFSSNP
                     AVTIDIRTVGDAASRQKAGAVKETVREAEDTGDAIAVEEELREHYARRGLDAAAVDQS
                     VRAYSSRVVNQSYRALLRAVELKHMVARVARVDMRTVAPEARAKWLEMMRAQAAAFER
                     DNAALRRELQPVFFSEESTDVVEDIAINSDADLARAVERLHRLALANNDAIRQAFTIS
                     KASSAAAFKSPQFRRNLEGATRLSDRISRY"
BASE COUNT          416 a          655 c          674 g          472 t
ORIGIN      
        1 gcccgttagg aagagggaat gcctgaagga tcggccgcat cgccgggttt gccgtttgcc
       61 ggagattgat tgacggcaca ttggtcaaag caaacttggg cgttcttaat ctcagtccct
      121 cgtacgagat gaagaaaaag gttttgtttc tgccgtcgta ccacggttgg gaaccgcctt
      181 cgccgaagcg tggtagcaag agtggaccac taaaggttcc gccgaagtcg ttttgacgtt
      241 cgggtggccg ggcctgctgc gcgcgatttg caaaccagtc gttagcgtcg aatttgtcgt
      301 tgcggatgta atcgaagagc gaaccatgga attcgtttga gccggagcgg gtgacgatcg
      361 agatctggcc gccgggggcg cggccgtact ccgcggagta ggttgaggtt tgcacctgga
      421 attcctgcat tgcctccaca gagaccatgc tgttcgtgcc gccgaaggtc gtgaggcccg
      481 gcagcgtgcc gctggtcgcc tgaccgggca cagcgcccgc gccgttgccg gtgttcgcgc
      541 ttacgccgtc gaccatgaag tagttggcat tcgcgcgctg cccgttcacg ctgaactgtc
      601 cgacgttatt caccgacgat cccggaacca tcaccacgcc cggcgtcagc gcgatcaacg
      661 attgaaagct cctgccgttg agcggcaggt tcgcgacgaa ctgtcgatcg acggtggtcc
      721 cgactgccgg tgattgatcg agcaaagccg gcgtgtcgat cacgtcgact gtttgactgt
      781 tcacgcttcc gactttcaac tgaatcctga gcgccacacg atcgttgacg ttcaggatca
      841 cgtcgcgagc ttcagccgga ctgaaaccct cgcgttcggc tttcactgtg tagtttcccg
      901 cgggaagtag tggaacgacg aaagcgcctt cgtcatccgt gatcgtggaa cgttgaaaac
      961 cctgggcgat gctgatgact gcgatgttca cgccgggaac gacagcgtcg ttctgatcgg
     1021 taaccgtgcc cgtgagcgtg gcggttggac tctgcgccga aacgaccgag ctgtttactg
     1081 aaataaggac gagcagaaga aatgaactca gaattaaacg tctaaaaacc gaattcgtgt
     1141 gaggacagac gacaaaggga cagacttccg gactgcttgg cattgctcct ccttttcggt
     1201 gacgtgcttt cgggcgatga aaagcgcgtg agtttcgttt cagctcccct catctctgcg
     1261 tcggttgcac gcggaggagc tgtcggtctg tcgccgctaa taccgcgaga tgcggtccga
     1321 caaccgggtt gctccttcca aattgcgtct gaactgtggc gacttgaacg ccgccgcgga
     1381 acttgctttt gagatcgtga acgcctgccg gatcgcgtcg ttgttggcga gcgccaggcg
     1441 atgcaggcgc tcaaccgcgc gagcgagatc tgcatcgctg ttgatcgcga tgtcttcaac
     1501 gacgtcggta gattcttcgg aaaagaagac gggctgtagc tcgcggcgca gtgcggcatt
     1561 gtcgcgctcg aatgcggccg cctgcgcgcg catcatctcg agccacttgg cacgagcctc
     1621 cggcgcaact gtgcgcatgt ccacgcgcgc aacacgcgcg accatgtgct tcaactcgac
     1681 cgcgcgcagt agcgcgcgat agctctggtt cactacgcgc gacgaatacg cgcgcacaga
     1741 ctggtccacc gcggcggcgt cgagtccgcg ccgggcgtag tgctcgcgca gctcctcctc
     1801 gaccgcgatc gcatctccgg tgtcttcagc ttccctaaca gtctccttca ccgcgccggc
     1861 tttttgccgg gacgcggcgt caccgacggt gcgaatgtcg atagtcaccg ccggattact
     1921 gctgaacgga cgcaacgcgc gcaggaactc gtcgcgccgt tcagcagtgt cgactattcc
     1981 ctcaacgcgc agtgacccac tcgcgctgcg cgtgagggcg acttgctcat tcctgtcggc
     2041 cttagcctga ctgagcaagt atgcaacgtc gatctccagc tctgttgaag ctgtgaccgg
     2101 cgtgggggca gatggaccag agtttcgcgg cgcaacggcg ccgccgttta cctcttttac
     2161 caactcccgc tcgatttcga agacgtttgc agggacatct cttgcaggaa gcacctc
//
LOCUS       DASWTX010000446         1713 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_72101, whole genome shotgun sequence.
ACCESSION   DASWTX010000446 DASWTX010000000
VERSION     DASWTX010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1713)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1713
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72101"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..325
                     /locus_tag="VGD38_06840"
     CDS             <1..325
                     /locus_tag="VGD38_06840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727764.1"
                     /translation="AITNMLAHRDLALRDLPSRLHVYDHSLEFVNARRSVGFSPVAQK
                     AIRYGMPQRLNPQLASVLTNPAYGLLLSLRGLPSLLREARRFANRKAEIVSFNDEFRL
                     RIYGF"
     gene            complement(313..1515)
                     /locus_tag="VGD38_06845"
     CDS             complement(313..1515)
                     /locus_tag="VGD38_06845"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0727765.1"
                     /translation="MALSALLLLGMTIPGFSQSRRQPPTSNEKKNKRPAEGQKPGEQE
                     PVPQDIVPVKPQDIEKVAISTNLVNVDAVVYHKKSGQIVTGLKKGNFALFADGQQQEI
                     TNFATPEAPITVAMVVEYSKWSEMFGLYGSRGYEPGTYEVIRPTAMFLSQFIKPPDDY
                     VSVTAFDIRPTPLTDFTNDPGRLNAVVTLLLRNTPAFRETNLFDALKFVMVGGRADSV
                     VLEDSKSEKSDYSGMVSVQGRRRAVLLVASGIDTFSKINYGDARKVLKNSGVPVYIIG
                     TANLFKKIYGDSLPATDSMLGMPGRMTWLQADNTLQTFAKETGGAYFPVTFEGELPKV
                     LGTINALLRSQYSLGFNPGDVRDGKEHKLKVSVDVDGDGTYDDKEYVIQARSVYIAPK
                     PDGAVQKP"
BASE COUNT          341 a          493 c          491 g          388 t
ORIGIN      
        1 agcaatcaca aacatgctgg cccacagaga tctcgcgctc agagatctgc cgagccgttt
       61 acacgtctac gatcattcgc tggagtttgt gaatgcccgc cgcagcgtgg gattttcgcc
      121 ggtggcccaa aaagcgattc gctacggcat gccgcagcgg ttgaatccgc agttggcgtc
      181 ggtgctgacg aatcctgctt atggtttgct gttgagcttg cgcggtttgc cgtcgttgct
      241 gcgtgaggcg agacggtttg caaatcgcaa ggcggaaatc gtgtctttca acgacgagtt
      301 ccgcctgcgg atttacggtt tctgaacggc gccatcgggc ttcggcgcga tgtaaacact
      361 gcgcgcctgt atcacatatt ccttgtcgtc gtaagtgccg tcgccgtcca cgtcaacact
      421 cactttcaac ttgtgctcct taccgtcgcg cacgtcaccg ggattgaaac cgaggctgta
      481 ctggctgcgg agtagcgcgt tgatcgtgcc gagcaccttc ggcaactcac cttcaaacgt
      541 caccggaaaa taagcaccgc cagtttcctt cgcgaacgtt tgcagtgtgt tgtcggcttg
      601 cagccaggtc atgcggccgg gcattccgag catgctgtcg gtggccggca aactgtcgcc
      661 gtagattttc ttgaagaggt tcgcggtgcc gatgatgtaa acaggcacgc cggaattctt
      721 caacactttg cgagcgtcgc cgtagttgat cttgctgaac gtgtcgatgc ccgacgcgac
      781 gagcagcacg gcgcggcggc gtccctgcac ggaaaccatt ccggagtaat cagacttttc
      841 tgacttcgaa tcctcgagca ccaccgaatc agcacgtccg ccgaccatca cgaacttcaa
      901 cgcgtcaaac aggttcgtct cgcgaaacgc gggcgtgttt ctcaacagca gcgttacgac
      961 ggcgttcagg cggcccggat cgttggtgaa gtcggttaac ggagtcggac gaatatcaaa
     1021 agccgtgacc gaaacgtaat cgtcgggcgg cttgatgaac tgcgacagga acatcgcggt
     1081 tgggcgaatg acttcgtacg tgcccggctc gtagccgcgg ctgccgtaaa gtccgaacat
     1141 ttccgaccac ttgctgtatt cgaccaccat cgcgaccgtg atcggagctt cgggcgtggc
     1201 gaagtttgtg atctcctgct gctgcccgtc tgcgaaaagc gcgaagttgc ccttctttaa
     1261 acccgtgacg atctgaccgc tcttcttgtg ataaacgacc gcgtcgacgt tgacgaggtt
     1321 ggtcgaaatg gcgactttct cgatgtcctg cggcttaacg ggaacgatgt cctgtggaac
     1381 cggttcctgc tcgccgggtt tctgcccctc tgccggacgc ttgtttttct tctcgtttga
     1441 ggtgggcggc tggcggcgcg actgcgaaaa accgggaatc gtcatgccca acagcagcag
     1501 cgcggagaga gccacagcaa aaaacgcgta tattcggttg gaattcatag ttcttactcc
     1561 agagggtcag cccaacgatc agtgggtctg atgcggcgcg aatggccgga gtttaccact
     1621 accggccgac cgcttccgcc tcgataacga tgtcgtagct gccggtatta tcggccaaat
     1681 cgccctcatt cacacccagg aacagcactc cgt
//
LOCUS       DASWTX010000447         2319 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_135234, whole genome shotgun sequence.
ACCESSION   DASWTX010000447 DASWTX010000000
VERSION     DASWTX010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2319)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2319)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2319
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135234"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..756
                     /locus_tag="VGD38_06850"
     CDS             <1..756
                     /locus_tag="VGD38_06850"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY0727766.1"
                     /translation="PSQWTIIEGGPGDGTFARRVQQALKDSHPHVFEATRYELSDAQA
                     DAQIPSLYFSNELLDAFPVHRLTSEGELYVTLDEKGHFVWEVGPLSTPRLAQFDVAAG
                     QIIEVNLAIDDWLASVVTKLNPEFVITVDYGAEAAELYDPVLRPNGTLRAFSRHQFVD
                     NVLSAPGEYDITSSVNWTQVKATGERLGLKVVEFESQDRFLLRAGLLDALQYKTEHAT
                     TDSEKLKLAVDAREMILPGNMASSFQVLVQRRK"
     gene            753..1421
                     /locus_tag="VGD38_06855"
     CDS             753..1421
                     /locus_tag="VGD38_06855"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HEY0727767.1"
                     /translation="MMTRGFELIDVCHSIEDGMITYKGLPAPVITDHLTREDSRNVYA
                     PGTEFHIGKIEMVANTGTYLDTPFHRYARGRDLAGLDLYSVANLEGLVVRITETGIGA
                     DVFSGVDVKDKAVLIHTGWDRHWRTEEYFSGNHPFLTADAANYLAKNGATLVGIDSYN
                     IDSTSDASRPAHSVLLGHDIPIVEHLCRLSNLPDNGFKFFAVPVKVKNFGTFPVRAFG
                     LVVR"
     gene            complement(1422..>2319)
                     /locus_tag="VGD38_06860"
     CDS             complement(1422..>2319)
                     /locus_tag="VGD38_06860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727768.1"
                     /translation="RMGLWQEAIRSNLDAEASAKAFARRHQMAGAWDEQLHAMDYLAY
                     AYLQSAQDKLAWGVLDELNKIPTVEPKTFKVAYAFAAIPARYALERRRWDEAARLALP
                     ANTVEMFPWKKFPWAEAHIHFARAIGFARSGDAKAAQQEVDRLAALQNALVLVKGEYD
                     WAKQVEIERQIAAAWVAFAAKDYDGSLKLMRAVAELDDKTDKHPVTPGSILPAREQLG
                     ELLLELKQPSAALAEFETSLRTAPERFNGLYGAARAATLAADQKKARSYFEKLIALTR
                     QADTPRPEIAEAKAFLAVVSKK"
BASE COUNT          484 a          721 c          614 g          500 t
ORIGIN      
        1 ccttcacaat ggaccataat tgaaggcgga cccggcgacg gaaccttcgc ccgccgcgtc
       61 caacaggcat taaaggactc ccatcctcac gtattcgaag cgacccgcta cgagctcagc
      121 gacgcccaag ccgacgcgca aattccctcc ctgtatttct ccaacgagct gctcgacgca
      181 tttccagtac accgtttgac tagtgaaggt gagctatatg taacgttgga cgagaagggc
      241 cactttgttt gggaagtcgg gccgctttcg acgccacgcc ttgctcagtt tgatgttgcg
      301 gcgggtcaaa ttattgaggt caacctcgcg attgacgact ggctagcttc agttgtgacg
      361 aaactgaacc cggagtttgt gatcaccgtc gactacggcg ccgaggctgc tgaactttac
      421 gatccggttt tgaggccgaa cggcaccttg cgcgcatttt ccaggcacca gtttgtagac
      481 aacgtgttga gtgctccggg cgagtacgac atcacgagca gtgtgaactg gacgcaagtt
      541 aaagcgactg gtgagcgttt gggattaaaa gtcgtggagt ttgagtcaca ggatcgcttt
      601 cttctcaggg ccgggttgct ggacgccctt caatacaaaa ctgaacacgc aactacagac
      661 tcagagaagt taaagttagc cgttgatgcc cgagagatga ttcttcccgg taatatggct
      721 tcgagctttc aggttttggt gcagaggagg aaatgatgac gcgaggcttt gaactgatcg
      781 acgtttgtca cagcatcgag gacggcatga tcacttacaa aggtctgccc gctccggtga
      841 tcacggacca cctcacccgt gaagactcac gcaacgtcta cgcgcccggt acggagtttc
      901 acatcggcaa gattgaaatg gtcgcgaaca ccggcacgta cctcgacacg ccctttcatc
      961 gttacgcacg agggcgcgat ctcgcggggc tggatcttta ctccgtcgct aatctggagg
     1021 gcttggtagt gcgaatcaca gagacgggga ttggggcgga tgtgttcagc ggtgtcgatg
     1081 ttaaggataa ggcagtcttg attcacacgg gctgggaccg gcactggcgc accgaagaat
     1141 acttcagcgg caatcatcca ttcctgaccg cagacgccgc gaactacctc gcgaagaacg
     1201 gcgccacact cgtcggcatc gactcctata acatcgactc aacctccgac gcctcgcgcc
     1261 cggcacactc agtccttctc ggccacgaca tccccatcgt cgaacacctc tgccgcctct
     1321 ctaatctccc cgacaacggc ttcaaattct tcgccgtccc cgtaaaggtc aaaaacttcg
     1381 gcacgtttcc ggtgcgcgcg ttcgggttag tagtgcgctg atcacttctt cgaaacaacg
     1441 gcaagaaacg ctttcgcctc ggcgatctcc ggccgcggag tatcggcctg gcgcgtcagt
     1501 gcaattaact tctcaaagta actgcgcgcc ttcttctgat ctgctgccag cgttgccgcg
     1561 cgagctgcgc cgtaaagccc attgaagcgc tcaggtgcgg tgcgaagcga cgtttcaaac
     1621 tccgccaacg ccgccgacgg ctgtttcaac tccagcagca actcgccaag ctgttcgcgc
     1681 gccggaagaa tcgacccggg cgtcactgga tgcttgtcgg ttttatcatc cagctccgcc
     1741 accgcgcgca tcagcttcag cgagccatcg taatccttgg cagcaaaagc tacccacgcc
     1801 gccgcaatct gcctttcgat ctccacttgt ttggcccagt cgtattcgcc cttcacgagc
     1861 accagcgcgt tttgcaacgc cgcaagtcta tcgacttcct gttgcgccgc ctttgcatct
     1921 ccactacgcg cgaaaccgat cgcgcgcgca aagtgaatgt gtgcctccgc ccaggggaat
     1981 ttcttccacg gaaacatctc gaccgtgttc gccggcaacg ccagtctcgc tgcttcgtcc
     2041 caacgccgtc gttccagcgc gtaacgcgcc ggtatcgccg cgaacgcata cgccactttg
     2101 aaagtcttcg gctcgaccgt cggaatcttg ttgagttcgt cgagcacgcc ccacgcgagc
     2161 ttgtcctgcg cgctttgcag gtacgcgtac gcaagataat ccatcgcgtg caactgctcg
     2221 tcccacgcgc ccgccatctg gtgccggcgc gcgaaagcct tcgccgacgc ttctgcgtcg
     2281 agattcgaac ggatcgcttc ctgccacaaa cccatgcga
//
LOCUS       DASWTX010000448         2639 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_289554, whole genome shotgun sequence.
ACCESSION   DASWTX010000448 DASWTX010000000
VERSION     DASWTX010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2639
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289554"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..258
                     /locus_tag="VGD38_06865"
     CDS             <1..258
                     /locus_tag="VGD38_06865"
                     /inference="COORDINATES: protein motif:HMM:NF014860.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727769.1"
                     /translation="TYGFCKLIVDRQTRLILGCHVVGERAVDITQLAAVAMAARMRVD
                     ELARVPLSFPTYAGALGRVAAKLTRDLNMTLEWQGSRGDVV"
     gene            307..912
                     /locus_tag="VGD38_06870"
     CDS             307..912
                     /locus_tag="VGD38_06870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727770.1"
                     /translation="MKILIRLLSTILVLGSFTFVRSQKPAIQKNGRAYGQQQQLKKLL
                     SRVGVDVPAIEARNTQPKKYRELKIRLSDPAKSSSESKSALSKQAQTPSAAIVEDKKH
                     SGALPRQRSLELSPTQIFIAGVDATNKLRWWSIVPDPRVVRSETQSPTGELRSEDYYV
                     SNVTLVVAFPDDPEITNLRFYRPVWNGTDYELKSLTNVPTR"
     gene            922..2508
                     /locus_tag="VGD38_06875"
     CDS             922..2508
                     /locus_tag="VGD38_06875"
                     /inference="COORDINATES: protein motif:HMM:NF021021.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M64 family metallopeptidase"
                     /protein_id="HEY0727771.1"
                     /translation="MKTPRKTRASHWAVSAVLLILCLPLIAFAEPSETIVDNGDAINR
                     VDITILGDGYTAAEMQKYRNDVQALMTQFFNNDPFREYRNFFNVHRIDVVSSQSGADH
                     PEKNSFVNTALDATYNCNQTQRLICINFTKANTIVGNSVAPSQRDIVFVIVNDAEYGG
                     SGGSIAVTSLHPDVLELILHELGHSFGLLADEYGGPPPPNCINNVEPSAANATKSTDR
                     ALIKWNHWIDPGTPLPTQMISQGVPGIYQGAAYCDAGLYRPTLESKMRVLGQPYEQVN
                     TEQLIRRIYNLVSPIDASEPAATEISLTTEQSQTFAVTPLLTFSNTINIDWYVDGVFQ
                     GTGAAFTVANLTAGNHVVDAVVKDNTPMVRKDTENLLLDNRTWNLTVNNAPAPTPTPT
                     PSPTPVPSPAPLLLLEQNSNSAIAVDSVSLLRYPFPVSTVPNYSTDGHTRLMLFAVNV
                     ELQADENVSFITAEAEDAQQTVYPLIVEYVGRVPNLDALTQINVRLPDNLANAGNVLL
                     SIKVRGVQSNKVLVNIRPPL"
BASE COUNT          616 a          792 c          686 g          545 t
ORIGIN      
        1 acgtacggat tctgcaaact catcgtcgat cgccaaacac gtttgattct cggttgtcac
       61 gttgtcggcg aacgcgcagt agacatcacg cagcttgcgg ccgtagccat ggcggccaga
      121 atgcgcgtcg acgaactcgc gcgagtgccg ctttcctttc ccacttacgc cggcgcgctc
      181 ggccgcgtag cagccaaact cacgcgcgat ctcaacatga cactcgagtg gcagggcagc
      241 cgtggagatg tcgtgtaaaa gttcagccat actcctgtca caaaattcta gttacatgca
      301 cacatcatga agatcctcat ccgcttacta tcgaccattt tggtactcgg ctccttcacg
      361 tttgtgcgga gtcagaaacc ggccattcaa aaaaatggaa gagcgtatgg acagcagcaa
      421 caactaaaga aactgctgtc gcgggtggga gttgatgtcc cggcgatcga agcacgcaac
      481 acgcaaccga agaagtatcg cgagctgaag attcgcttga gcgatcccgc gaaatcttcg
      541 agcgaatcca agtctgctct gagcaagcag gcacaaacgc cgagcgccgc gatcgttgaa
      601 gacaagaaac actccggcgc attgccgcgc caacgttcac tcgaactctc tccaacacag
      661 atatttatcg ccggtgtcga tgcgacgaac aaactgcgct ggtggtcgat cgttcccgat
      721 ccgcgcgtcg tccgttctga aacgcagtcg cccaccggcg agctgcgcag cgaagactat
      781 tacgtttcca acgtcacgct cgtcgtggca tttcccgacg atcccgaaat cacgaacctg
      841 cggttctacc gtcccgtgtg gaacggaacc gactacgaac tgaaatcgct gacaaacgtg
      901 cccactcgtt aggtgtctgc aatgaagacc ccacgtaaaa cccgcgcctc tcactgggca
      961 gtaagtgctg tcttgttaat tctctgtctt ccgctcatcg ctttcgccga gccgtctgaa
     1021 accatcgtcg acaacggcga tgcaatcaac cgcgtggaca tcacgattct cggagacggt
     1081 tacaccgccg cggagatgca gaagtatcgc aacgacgtcc aggcgttgat gacgcagttt
     1141 ttcaataacg atccgtttcg cgagtatcgc aacttcttca acgtacatcg cattgatgtc
     1201 gtcagtagcc agtccggcgc tgaccacccg gaaaaaaact cattcgtaaa cacagcactc
     1261 gacgctactt acaactgcaa ccagacgcag cggctgatct gcatcaactt cacgaaggca
     1321 aacacgatcg tcggcaacag cgtcgcgcct tcgcaacgcg acatcgtgtt tgtgatcgtt
     1381 aacgacgctg aatacggcgg atcgggcgga tcgatcgccg tcacgtcgtt acatccggac
     1441 gttctcgagc tcattcttca cgaactcggt cacagcttcg gcctgcttgc cgacgagtac
     1501 ggaggtccgc cgccgccgaa ttgcatcaac aacgttgagc cttctgctgc aaacgcgacg
     1561 aagtcgaccg accgcgcgct catcaaatgg aaccactgga tcgatccggg cacgcctctg
     1621 ccgacacaaa tgatttcgca aggtgttccg ggtatttatc agggcgcggc ttactgcgat
     1681 gcgggactgt atcgcccgac gctcgagtcg aagatgcgcg ttctgggaca gccttacgaa
     1741 caggtcaaca ccgagcaact gatcaggcgt atttacaatc tcgtttcgcc gatcgacgcg
     1801 agtgagccgg ctgcaacgga gatttcgctc acgaccgaac agtcacaaac ctttgctgtt
     1861 actccgctgc taacgttcag caacacgatc aatatcgact ggtatgtgga tggagtgttt
     1921 caaggcacgg gcgcggcatt taccgtcgcg aacctgacgg cgggtaatca cgttgtcgac
     1981 gccgtcgtca aagacaacac tccgatggtg cgcaaagaca cggagaactt gttgctcgac
     2041 aaccgcacgt ggaacctgac ggtcaacaac gcgcctgctc cgacaccaac gccaacgccg
     2101 tcacctacgc cggtcccgtc accggctcca ttgttgctgc tcgaacaaaa ctcgaacagc
     2161 gcgatcgccg tcgactcggt tagcttattg cgctacccat tcccggtttc gacagtcccg
     2221 aactacagca ctgacgggca cacacgcttg atgctgttcg cggtgaatgt tgaattgcag
     2281 gcagatgaga acgtttcgtt catcacggcc gaagccgaag acgcacaaca aaccgtctat
     2341 ccgctgatcg ttgaatacgt agggcgggtt ccgaacctcg acgcgttgac acagataaac
     2401 gtgcgcctgc ctgacaacct ggcgaatgcc ggaaacgtgt tgctgagtat caaagtgcga
     2461 ggcgtgcaga gtaacaaggt gctggtcaac attcggccac cgttgtagac gcgttggcgg
     2521 gactccgaaa gaagccccgc ctccgcatcc tgccgtgcaa gccacaacgg cggctaatcc
     2581 tcgatcgcta tttacgttcg gggttgttgt tgaccttgtt gctgtcctgg ttgttgccc
//
LOCUS       DASWTX010000449         2906 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_355125, whole genome shotgun sequence.
ACCESSION   DASWTX010000449 DASWTX010000000
VERSION     DASWTX010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2906)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2906
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355125"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            282..1910
                     /locus_tag="VGD38_06880"
     CDS             282..1910
                     /locus_tag="VGD38_06880"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047420 - N-acyl-D-amino-acid deacylase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacylase"
                     /protein_id="HEY0727772.1"
                     /translation="MAQNDYDLLIRNGNIVDGSGKPAFNADLAIKGDRIVRIGDLSRE
                     KAARTIDARGLVVAPGFIDMLGQSETYLLIDPRAMSKVMMGVTTEITGEGESIAPINE
                     RQIKEQEGFLRRYNLTIDWRTLDEYFKRLEKQGTGVNLGTFVGATQVREYVIGYEDRD
                     PTEIELERMKELVEQAMRDGALGLSTSLQYVPARFAQTPELVELAKVAKKYGGIYITH
                     QRSEANTIDASLSEVFEIALKAQIPVEIWHLKTAYKKNWGRMAHVLERIQQARDHGMD
                     VTADIYPYIAGSTSLAACLPPWALEGGTEKMLERLRDPATRKRLKKEISEESMDWENI
                     YLGSGGPEGVLISAVMNRELESLQGKRISEIAQQQKKDPLETVFDLLLADQGQTSAIY
                     FMMSETDLRAAMQAPFVSFCTDSGARATDGPLAGTKSHPRGWGTYPRILGRYVRDERL
                     LSLETAIHKMTGAPAARVGLRDRGLLREGMFADVTIFDPRTVSDRATFENPNQYPVGI
                     EYVLVNGKLSVDKGQHTKTLAGRVLRGPGFAAKP"
     gene            complement(1900..>2906)
                     /locus_tag="VGD38_06885"
     CDS             complement(1900..>2906)
                     /locus_tag="VGD38_06885"
                     /inference="COORDINATES: protein motif:HMM:NF027716.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF5009 domain-containing protein"
                     /protein_id="HEY0727773.1"
                     /translation="QHADWHGWTPTDLVFPFFLFIVGVSITLAFARRVEEGAVPRALY
                     LKVFKRAAIIFGLGLLLNLIPNFDLATVRSPGVLQRIAVCYLIASLIFLKTKVRTQFV
                     IALALLVVYWLLMTRVAAPGFAAGDLSKEGSLASYIDRLVFGPHVWRQAKVYDPEGLL
                     STIPAIATTLFGVLTGHWLRSERTRWDKVAAMFVAGAACVALGWAWNSFFPINKALWT
                     SSYVLFTTGLALQLLALCYWVIDINGFRRWAWPFEVFGVNALALFVGSGLMVKLMGLI
                     RIPQSDGTRISSQGWIFRNLFLSWASPINASLFYAIAFILFWLFLMWLLYRKRIYIKV
                     "
BASE COUNT          707 a          879 c          800 g          520 t
ORIGIN      
        1 gctcgcggaa gtcgaacaga tgaaggcgct gctggataac ccgttgctcg cccctgctgt
       61 catttttatc gccgaaccgc tgccggtagg tttggtgatg acgctcattt ccgcagccat
      121 tctcagaaaa cgccgcaaac aggtggaagt gccggtataa tccgtcgcga tcagcaaacc
      181 tgctcgcaaa ggaaacagca cgtcccatga ttcgcggttc gatctttgca cttctctgcc
      241 tgctcacctg ctcctttatt aatagcgggg agacacagcc tatggcgcaa aacgattacg
      301 atctcctgat ccgaaacggc aatatcgtag acggttccgg caaaccggcc ttcaacgcgg
      361 atctcgcgat caaaggcgat cgcatcgtgc gcatcggcga tctctcacgt gaaaaggcgg
      421 ctcgcaccat cgacgctcgt gggctcgtcg tcgcgcccgg ttttatcgac atgctcggtc
      481 agtctgaaac gtacctgctg atcgatccgc gcgcgatgag caaggtgatg atgggtgtga
      541 cgacggagat cacgggcgaa ggcgagtcga tcgcgccgat caacgaacgg cagatcaaag
      601 aacaggaagg tttcctgcgc cgttacaacc tgaccatcga ctggcgcacg ctcgacgagt
      661 atttcaaacg tctcgaaaag caaggcacgg gcgtgaacct cgggaccttt gtgggcgcga
      721 cgcaggtgcg cgagtacgtg atcggttacg aagaccgcga tccgaccgag atcgaactcg
      781 aacgaatgaa agaactcgtc gagcaagcca tgcgcgatgg cgctctcggt ctttcgactt
      841 cgctgcaata cgtgcccgcg cgtttcgctc aaacacccga acttgtcgaa ctcgcgaaag
      901 tcgcgaagaa atacggcggc atctacatca cgcatcaacg cagcgaagca aacacgatcg
      961 atgcttcgtt aagcgaagtt ttcgagatcg cgctcaaagc ccaaataccc gtcgagattt
     1021 ggcacctgaa aaccgcgtac aagaaaaact gggggcgcat ggcccatgtg ttagagcgta
     1081 tccagcaggc gcgcgaccac ggtatggatg tcactgccga catttatcct tacatcgccg
     1141 gcagcacctc gctcgccgcg tgtctgccgc cgtgggcact cgaaggtgga accgagaaga
     1201 tgctcgaacg cttgcgcgat ccggcgacgc gcaaacgttt gaagaaagag atctccgaag
     1261 agtcgatgga ctgggaaaac atttacctcg gcagtggtgg accggaaggc gtgctgatca
     1321 gcgctgtgat gaatcgtgag ttggagtcgt tgcagggcaa acgcatttcc gagatcgcgc
     1381 agcaacagaa aaaagatccg ctcgaaactg tcttcgatct gctgctcgcc gatcagggcc
     1441 agacgagcgc catctacttc atgatgagcg agaccgatct gcgcgcggcc atgcaggcgc
     1501 cgttcgtcag tttctgtacc gacagcggcg cgcgagccac agatggtcca ctcgccggca
     1561 cgaagtcaca cccgcgtggc tggggcacgt atccgcgaat actcggccgc tacgttcgcg
     1621 acgagcgcct gctaagtctt gaaaccgcca ttcacaaaat gaccggtgca cccgcggccc
     1681 gcgtcggcct gcgcgatcgc ggcttgctgc gcgaaggaat gtttgccgac gttacgatct
     1741 tcgacccgcg cacagtgagc gatcgcgcca ctttcgagaa cccaaatcaa tatccggtgg
     1801 gaattgaata cgtgctcgtc aacggaaaac tgagcgtcga caaaggccaa cacaccaaga
     1861 ccctcgccgg ccgcgtcctg cgtggtccag gcttcgccgc taaaccttga tatagatccg
     1921 tttgcgatag agcagccaca tcaggaacag ccagaacagg atgaacgcga tcgcatagaa
     1981 gagcgacgcg ttgatgggcg atgcccacga gaggaaaagg ttgcggaaga tccagccttg
     2041 tgaagagatg cgtgtgccgt cactttgcgg gatgcggatc aagcccatca acttcaccat
     2101 caatccactt cccacaaaca gcgcgagagc gttgacgccg aacacttcaa acggccacgc
     2161 ccagcggcgg aatccgttga tgtctatcac ccagtaacag agcgcgagca gttgcaacgc
     2221 caagccggtc gtgaacagca cgtatgaact ggtccacaac gctttgttga tcgggaagaa
     2281 cgagttccac gcccaaccga gcgcgacaca cgccgcgccc gccacaaaca tcgccgccac
     2341 tttgtcccaa cgcgtgcgct cgctgcgcag ccagtgaccg gtcaacacgc caaagagcgt
     2401 cgtcgcaatc gcgggaatgg tgctgagcag accttccgga tcgtagacct tcgcttgccg
     2461 ccagacgtgc ggtccaaaca cgagtcgatc gatgtacgac gcaagacttc cctctttact
     2521 caggtcaccc gcggcgaatc ccggcgcggc aacgcgcgtc atcaacaacc agtaaacaac
     2581 gagcagcgcc agcgcgatca caaactgcgt ccgtactttc gtcttcagaa aaattagcga
     2641 cgcaatcagg taacacacgg cgatgcgttg cagcacaccc ggactacgca ccgtcgccaa
     2701 atcaaaattc ggtatcaggt tgagcaacaa tcccaacccg aagatgatcg ccgcgcgctt
     2761 gaacactttc aggtacagcg cacgcggcac tgccccttcc tcaaccctgc gggcaaacgc
     2821 caacgtaatt gacactccca caatgaacag aaagaacgga aacacgagat cggttggcgt
     2881 ccagccgtgc caatccgcgt gctgca
//
LOCUS       DASWTX010000450         3487 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_333269, whole genome shotgun sequence.
ACCESSION   DASWTX010000450 DASWTX010000000
VERSION     DASWTX010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3487)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3487)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3487
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333269"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2734)
                     /locus_tag="VGD38_06890"
     CDS             complement(<1..2734)
                     /locus_tag="VGD38_06890"
                     /inference="COORDINATES: protein motif:HMM:NF012485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secretin N-terminal domain-containing protein"
                     /protein_id="HEY0727774.1"
                     /translation="MRNNNRIRTLISLVLALSIMAVPMTAFAKKGEKNFKRGMDYERA
                     QQWDKAAQEFTLAVAADPSNMEYQLHFRRASFNASQTYMQQGRSLAERGDYVGAYNAF
                     RQAYGYDAVNELAVSEMERMLRLQAVKEGRTPTSGNGNGNGGNGGGLKGNEVPDGGSM
                     TPVNGEIPSPSSVQLRVINYTGDLKALIRSLAEQLNLNVIFDRQSFTQSKNIDLNLKD
                     VTTAQALDYVFLQEGLFFQKLSRRTILVADQARRPQYQQLVLRTFYLSNMKPADARTL
                     VQQAIPPSVGRPQTIVVPDDATNSLTVRDTAENVRLIGELLQSVDKDRAEVVMDVNIY
                     EVSKNDMLQFGNQIGTTVDTGLGGSPGFSLLTDNGVVNGAAGTGVNLGALVGGVPTAL
                     AAALVIPPSVLRAFRSRDNTKLIASTQVHAFNGEESQARIGQRVPVQTAQAYPFGVQT
                     GTPVPGGGGVFPSGGFPVINYEPTGLTLKFTPQVFPNLDVQVKMNIEQKDVLGASTLT
                     PTFTERTMTGTARIQNNRTMMLASISTDIEARGRKGIAFIGGLPIIGRLFTSPTRDLR
                     QVDIVISVTPRVLRAPAVTPRDEEMRPSGTLQSPTTGSLAEMIREADREDQIAAARAL
                     PRNANIQLADAPVEVAKSVTAPATTAQNSNPQPATTTVANTPATTPVNNATVATNTPA
                     NTQPAPAQVKPPVDAATVAQNTSAPAQVKAPAGSETGAVEELPSFVPAPKSLIRDTAA
                     AEVATVNPGGATQNAVLTSMPKATATSLDTKLGTGRVAQLSLLQGDDVMKVGEKRRYA
                     IQLNSDVPLSLALLTLKFDPKVVKVHAVSAGNLLSTSGEGAPLFTPSIDAKGVCMISI
                     SSLNGKASFRGSGPLLFIDIEAIGAGDTALALLKETLHLVASDARDVTSEIIQGT"
     gene            complement(2937..>3487)
                     /locus_tag="VGD38_06895"
     CDS             complement(2937..>3487)
                     /locus_tag="VGD38_06895"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATPase, T2SS/T4P/T4SS family"
                     /protein_id="HEY0727775.1"
                     /translation="IMVGEIRDTETAQIAIQSALTGHLVFSTVHANNVIDVSGRFLNM
                     GVEPSNFVSSLNCVLAQRLIRMLCPYCKRQYVPTDTELAESGLQPEIYRERPFYMNVG
                     CDACNHTGYRGRTAIHELLDLSDNIREMIVERRPGSEVRRAAEAEGLKSLRESALQKV
                     FTGISTLHEINRVTFVEELDAA"
BASE COUNT          652 a         1064 c         1019 g          752 t
ORIGIN      
        1 ctgttccctg aatgatctcc gaggtcacgt cgcgagcgtc ggaggctacc aggtgcagcg
       61 tctccttcaa gagcgcgagc gctgtatctc cggcgccgat cgcctcgatg tcgataaaca
      121 gcaacggtcc ggaccctctg aacgacgctt tgccgttcaa cgaggagatc gagatcatgc
      181 agacgccttt cgcgtcgatg gaaggagtaa acaacggcgc tccttcgccc gacgtgctca
      241 gcaggttacc ggcagacaca gcgtgcactt tcacgacctt cggatcgaat ttcagggtca
      301 gcaaggccag actcaacggt acgtcggagt tcaactggat tgcgtaccgc cgcttctcgc
      361 cgaccttcat cacgtcgtcg ccctgcagca ggctgagctg cgccacgcga ccggtgccga
      421 gcttggtgtc gagcgacgtg gcagtcgctt tcggcattga agtcaacacg gcgttctgcg
      481 ttgctccgcc gggattcaca gtcgcgactt ccgccgctgc cgtatcgcga atcaacgact
      541 tcggcgccgg cacgaacgac ggcaactctt ctaccgctcc agtctcactg ccagccggtg
      601 ctttaacctg ggccggcgca gacgtgttct gcgcaacagt ggccgcatca accggtggtt
      661 tcacctgggc cggtgcgggt tgcgtgtttg ctggtgtgtt agtcgcaacg gttgcgttgt
      721 tgaccggagt tgtagccggc gtgttcgcaa cagttgtagt ggcaggctgc gggttgctgt
      781 tctgcgcggt tgtcgcaggc gcggtcaccg acttggcaac ttcaaccggc gcatccgcca
      841 gttggatgtt cgcattacgc ggcagagcac gcgcggcggc aatctggtct tcacgatccg
      901 cttcgcgaat catttcagcg agcgaacccg tcgtcggcga ctgcaacgtg ccgctcggac
      961 gcatctcttc gtcacgcggc gtcaccgccg gtgcgcgaag cacgcgcggc gtaacgctga
     1021 tcacgatgtc cacctggcgc aggtcgcgcg tcggcgacgt aaacaaccgg ccgatgatcg
     1081 gcagtccgcc gataaacgcg atgcccttgc ggccacgcgc ttcaatatcc gtcgagatgc
     1141 tcgcgagcat catcgtgcga ttgttctgaa tacgagccgt gcccgtcatc gtgcgttcag
     1201 taaacgtcgg cgtcaacgtg ctcgcgccga gaacgtcctt ctgctcgatg ttcatcttca
     1261 cctgcacgtc gaggttcgga aacacctgcg gcgtgaactt caacgtcaaa ccggtcggtt
     1321 cgtagttgat gaccgggaaa ccaccgctcg ggaaaacacc gccaccgccc ggcaccggag
     1381 ttccggtctg cacgccgaac ggatacgcct gcgctgtttg caccggcacg cgttgtccga
     1441 tacgcgcctg cgattcctca ccgttgaacg catggacctg cgtcgaagcg atcagcttgg
     1501 tgttgtcgcg gctgcggaaa gcgcggagca ctgaaggcgg aataacgagt gcagcggcaa
     1561 gcgctgtcgg aacaccaccg acgagagcac cgaggttgac gcctgtacca gcggcgccgt
     1621 tcacgacgcc gttatccgtc agcaacgaga agcccggtga gccgccgagt ccggtgtcga
     1681 ctgtcgtacc gatctggtta ccgaactgga gcatgtcgtt cttcgacact tcatagatgt
     1741 tgacgtccat caccacttca gcgcggtcct tatcgacgct ctgcaacagc tcgccgatca
     1801 gacgcacgtt ctcagcggtg tcgcgcacgg tcaaactgtt tgtcgcatca tccggcacga
     1861 cgatcgtttg cggacggccg actgacggcg gaatcgcctg ctgcacgagc gtgcgtgcat
     1921 cagccggttt catgttcgac aagtaaaacg tgcgcagcac gagttgttga tactgcgggc
     1981 ggcgcgcctg gtccgcgacg agaatcgtgc ggcggctgag cttctggaag aagagacctt
     2041 cctgcaggaa cacgtagtcg agcgcctgcg cggtcgtgac gtccttcaga ttaagatcga
     2101 tgttttttga ttgcgtgaat gactggcgat cgaagatgac gttgagattg agttgctcgg
     2161 cgagactgcg aatcaacgct ttcagatcgc cggtgtaatt gatgacgcgc aactgcacgc
     2221 tgctgggcga ggggatctcg ccgttgacgg gcgtcatgct cccaccgtcg ggaacttcat
     2281 ttcccttaag accgccgccg ttgccgccgt tcccattgcc attgccgctg gtcggtgttc
     2341 gtccttcctt caccgcctgc aggcgcaaca tcctttccat ctccgacaca gcgagctcgt
     2401 tcaccgcgtc atagccataa gcttgtcgaa aggcgttgta cgctccgaca taatcgcctc
     2461 gctccgccag cgacctcccc tgctgcatgt acgtctgcga agcgttgaaa ctggcgcggc
     2521 ggaagtggag ttggtactcc atgttcgacg gatccgcggc caccgcgagc gtgaattcct
     2581 gggcggcctt gtcccactgc tgcgcccgtt cgtaatccat gccgcgcttg aagttcttct
     2641 cgcccttttt ggcaaatgcc gtcatcggca ccgccatgat gctgagggcc agaacgaggg
     2701 atataagtgt gcgtattctg ttgttgtttc tcatggctat ctactcggga ggtggaaagt
     2761 tacagcgacc ctgttgaagc gtccctaata atgccgccgc cgcgcttaag atgcaagatc
     2821 gtgacggctg atttccttac acgcgaacag tttatttcag ttccctataa actgtccgcc
     2881 acatctcact tgtactttta ctgcggggga gttgcgggtc ggggttctgg ttgctttcac
     2941 gccgcgtcca actcttcgac aaacgtgacg cggttgattt cgtgcaaggt cgaaatcccg
     3001 gtaaaaacct tctgcaaggc cgactcgcgt aaacttttca acccttcggc ctccgccgcg
     3061 cggcgcactt ccgaacccgg ccgccgctcg acaatcattt cgcggatatt atccgacaaa
     3121 tccagcaatt cgtgaatggc cgtgcggccg cgatagcccg tgtgattgca cgcgtcgcag
     3181 ccgacgttca tgtagaacgg gcgctcgcga tagatctcgg gctgcagtcc cgattccgcc
     3241 agctcagtat cagtcggcac atactggcgt ttgcaatacg ggcacaacat tcgaatcagc
     3301 cgctgggcca gcacgcagtt caacgaagag acgaagttgg agggctcgac gcccatgttc
     3361 agaaagcgcc cgctcacgtc gatgacgttg ttggcgtgaa ccgttgaaaa tacgaggtgg
     3421 cccgtcaacg cggattggat cgcgatctgt gcggtctcgg tgtcgcgaat ctccccgacc
     3481 atgatct
//
LOCUS       DASWTX010000451         3282 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_243788, whole genome shotgun sequence.
ACCESSION   DASWTX010000451 DASWTX010000000
VERSION     DASWTX010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3282
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243788"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1133)
                     /locus_tag="VGD38_06900"
     CDS             complement(<1..1133)
                     /locus_tag="VGD38_06900"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEY0727776.1"
                     /translation="MSARAEAIVTAGLRPELFAGRGLLTNSRTLIFVALAVLILAGFG
                     FRVTGLSAEGLSEDELNKLTAVAGYRAHGLTGENGEHPMLMKALQTASIIAAEKWNSF
                     VGPGEQIAPETALRLPGVIAGALTALLIYLIAAELFGAEVALIAAALWAFNPTAIGFN
                     RVAKEDTFLLFFFLLANVFWLRGQRVAESTDQNPNKYYWATAACYGAMVASKYVPHLF
                     AISICYYWMFQQLPETRWRLGKIRLLKFFAIMFLVFLVLSPTVLLPETWRQMGLFAGG
                     NRVSHDGYEFMNRLYPQRFTDWLNGIPVYFYLVFTAVKLPVLTVVSFVVGLPLLFRRK
                     LGDGRYFILFWLFLWVVAFCFPGGKFTRYYTTVLPAVLITSALG"
     gene            1228..2568
                     /locus_tag="VGD38_06905"
     CDS             1228..2568
                     /locus_tag="VGD38_06905"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEY0727777.1"
                     /translation="MAPPQSVTTNPTLARRLGLFDATMIVMGGIIGSGIFMNPSVVAL
                     QVHTPFLILGAWTIGGLFALAAGFIWAELASRRPEVGGQYAYLREAFHPAVAFLYGWV
                     LLLVVQTGGMAAVAVTFSRYFVELTNAPFGYSQLAAIILALLTIINCLGVRAGSTVQS
                     ILMVLKILALAALVICGLLLTQPASNPSELLDRPPSLDLLTAFGAALVPVIFAYGGWQ
                     TATFVASEIKEPRRNLPRGLILGVTGVVVLYLAANVVYIMVLGTSGLANSAAPASDVM
                     RQALGDFGARAIAAGIAISTVGFLSQSMLTAPRVYFAMAQDGLFFKSVGTVHPQTRAP
                     IVAIALQGLLAIAIAYLGTYERILNYVVSVDVIFFGLTACCIFVFRKRAQNDEAGVVK
                     VPGHPVTTLLFVAICWTVAVNTVYRFPENTLIGIAIMLAGLPAYWFWRSRRKWE"
     gene            2565..>3282
                     /locus_tag="VGD38_06910"
     CDS             2565..>3282
                     /locus_tag="VGD38_06910"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEY0727778.1"
                     /translation="MTAARQVTTSSYMHWAKMRSTAKFNLATSGMPNLSIRDLRVSLD
                     DLEITDGGYGYEPLITRIGERYRVAKESIVTAAGTTFANHLAMAALVKPGDEVWFESP
                     AYEPMLATVRYLGADVKRFKRRFEDGFAVSPAEIEKHVTSKTRLIVLTNLHNPSGALT
                     GDATLKQIGEIARGVGARVLVDEVYIETLFEQSPRTSFHLGSEFVVTSSLTKAFGLSG
                     LRCGWIVAEPELAQRMWLLND"
BASE COUNT          731 a          938 c          925 g          688 t
ORIGIN      
        1 cccaacgcgc tcgtaatcag cacagccggc aacaccgtcg tgtagtaacg cgtaaacttc
       61 ccacccggaa agcaaaacgc caccacccac aagaacaacc agaacaaaat aaagtaacgc
      121 ccatccccga gcttgcgtcg aaacagcagc ggtagaccaa caacaaaact caccaccgtc
      181 aacaccggca gcttcaccgc cgtaaacaca agataaaaat acacaggtat gccgttgagc
      241 cagtcagtga accgttgcgg atacaagcgg ttcataaact cataaccgtc gtgactcacg
      301 cgattgccac ccgcgaacaa tcccatctgc cgccacgttt ccggcagcag caccgtcggg
      361 ctcaacacca gaaacaccaa aaacatgatc gcaaagaact tcaacaaacg aatcttaccc
      421 agccgccaac gcgtttccgg aagctgttga aacatccagt agtagcagat gctgatcgcg
      481 aacaagtgcg gcacatactt cgacgccacc atcgcgccgt aacacgcagc agtggcccag
      541 taatacttgt tcggattctg atcggtgctc tccgcaacgc gctgtccacg caaccaaaac
      601 acgttcgcga gcaaaaagaa gaacagcaga aacgtgtctt ctttagcgac gcgattgaac
      661 ccgatggcag tcgggttgaa ggcccacaac gcagccgcaa tcaaagccac ttcagcaccg
      721 aagagctcgg cggcaatcaa atagatcaaa agcgcagtaa gagcacccgc gatcactcca
      781 ggcaagcgca acgcagtctc cggagcgatc tgttcacccg gaccaacaaa cgagttccac
      841 ttctctgcgg caatgatcga cgcggtttgc agcgccttca ttaacatcgg atgctcgccg
      901 ttctcgcccg tcaagccatg cgcgcgatag ccggcaaccg cggtgagttt gttgagttcg
      961 tcttcgctga gaccttcggc gctgagcccg gtgacacgaa agccgaagcc cgccaggatc
     1021 aggacggcaa gtgcgacaaa tatgagtgtt cggctatttg tgagaaggcc acgtccggca
     1081 aataattctg gccttagacc agccgtgacg atcgcttcag ctcttgcgga caaatcattt
     1141 cccctcaata aaacgcgaga gattagcgaa aacttcgact gagtgtcaaa accaaaccgc
     1201 ccaatctgtg atagaaagag aaggtaaatg gccccgccac agtcagtaac gacgaatccg
     1261 acgctcgcgc ggcgtctcgg tctcttcgat gccacgatga tcgtgatggg tggcatcatc
     1321 ggctcgggca ttttcatgaa tccgtcggtg gtggcgcttc aggtccacac accgttcctg
     1381 attttgggcg catggaccat cggcggttta ttcgcgctcg ccgcgggatt tatctgggcg
     1441 gaactcgcgt cgcggcggcc ggaggttggc ggccagtatg catacttgcg cgaggcgttt
     1501 catccggcgg tcgcgtttct ttacggctgg gttttgttgt tggtggtgca aacgggcggc
     1561 atggccgcgg tcgcggttac gttctcgcgc tacttcgtcg aattgactaa cgcgccgttc
     1621 ggttattcac aactcgccgc aatcatcctc gcactgttaa cgatcatcaa ctgtctcggc
     1681 gtgcgcgcgg gcagcactgt gcaaagcatt ctcatggtgc tgaagatcct cgcgctcgcc
     1741 gcgcttgtga tctgcggact gctgttgacg caacctgcca gcaatccttc agagttactc
     1801 gatagaccac cttcactcga cttgctcacc gcgttcggcg ccgcactcgt gccggtgatc
     1861 ttcgcttacg gcggttggca aacagcgacg ttcgtcgcca gcgagatcaa agagccgcgc
     1921 aggaaccttc cgcgaggatt gatactcggc gtgacgggcg tcgtcgtgct ctatctcgcc
     1981 gcgaacgttg tttacatcat ggtgctggga actagcggtc tcgcaaactc agccgcgccc
     2041 gcgtcggacg tgatgcgcca ggcgctcggc gacttcggcg cgcgcgcgat cgccgccggc
     2101 atcgcgatct cgaccgtcgg ctttttgagt caaagcatgc tgactgctcc gcgtgtctat
     2161 ttcgcgatgg cccaggacgg actgttcttc aaaagtgtcg gcacagtgca tccacaaaca
     2221 cgcgcgccga tcgtcgcgat cgcgttgcag ggtctgctgg cgatcgcgat cgcgtatctc
     2281 ggcacatacg aacgcattct caactacgtc gtttccgtcg acgtgatttt cttcggactg
     2341 accgcgtgtt gtatcttcgt atttcgcaaa cgtgcacaaa acgatgaagc gggcgtggtg
     2401 aaagtgccgg gccatccggt cacgacgctg ctgttcgtcg cgatctgttg gacggtggcc
     2461 gtcaataccg tttaccgctt tccggaaaac acgctaatcg gaattgccat catgctggct
     2521 ggcttgccgg cgtactggtt ttggagatcg aggagaaaat gggaatgact gcggcgcgac
     2581 aggtgacgac ttcgtcttac atgcattggg ccaagatgag gtcgactgca aagttcaatc
     2641 tcgcgacgag tgggatgccg aacttgagta tccgcgatct gcgtgtatcg ctggacgatc
     2701 tggagatcac ggatggcggt tacggttatg agccactgat tacgcggatt ggcgagcgtt
     2761 atcgcgttgc gaaggagtcg atcgtcacgg cggcagggac gacgtttgcg aatcatctcg
     2821 cgatggcggc gctcgtgaag ccgggtgatg aggtgtggtt tgaatcgccg gcgtacgagc
     2881 cgatgctcgc gactgttcga tatctcggcg cggacgtcaa acgcttcaag cggcggtttg
     2941 aagacgggtt tgcagtttca ccggctgaga tcgaaaagca cgtcacgtcc aaaacgcggc
     3001 tgattgttct cacgaacctg cacaatccga gtggcgctct gaccggcgac gcaaccctga
     3061 aacagattgg cgagattgcg cgcggtgttg gtgcgcgcgt tttggttgat gaggtttaca
     3121 ttgagacgct gtttgaacaa tcgccgcgaa cgtcgtttca tctcggtagt gaatttgttg
     3181 tgacgagcag tttgacgaaa gcgtttgggc tcagcgggct gcgctgcggt tggatcgttg
     3241 ccgaaccgga gcttgcgcaa aggatgtggc tgctaaacga tc
//
LOCUS       DASWTX010000452         3707 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_355163, whole genome shotgun sequence.
ACCESSION   DASWTX010000452 DASWTX010000000
VERSION     DASWTX010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3707
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355163"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..817
                     /locus_tag="VGD38_06915"
     CDS             <1..817
                     /locus_tag="VGD38_06915"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015333 - peptide:proton symporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="oligopeptide:H+ symporter"
                     /protein_id="HEY0727779.1"
                     /translation="QDPNSSWHYGFGAAGVGMVLGLVIYVLNQRHLKNVGNKIPKASK
                     ETTTKTAVREPLTGDDWKRIAVIFILFLFTILFWGAYEQKGASLNLFADRLVRAEIFG
                     MSFPVPFLQSLTGIFVIMLAPVFSYMWIRMKDRQPSSPAKFALGLVFIGLAFMLLVPA
                     SLGTADGKVTFWWLVALYFLAVCGEMCLSPVGLSTVTKLAPLKLVGIMMGVWFLAAAL
                     GNKLAGYLSGFFDSNNPERLAMLYGGIAVGLLVSAAILALFTPSIKKMMGKVT"
     gene            842..2146
                     /locus_tag="VGD38_06920"
     CDS             842..2146
                     /locus_tag="VGD38_06920"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY0727780.1"
                     /translation="MKFNSRCAILALLFLFGAGTQQFTQAQGLGKFDRDNAIAMLDAA
                     KDDLKKNYYDPALRGIDIETKFKDAKERVKQATSRDQLIITVAQTLLDFDDSHTFFVP
                     PSRAAKVEYGWEMQMVGDAAFVTGVRPKTDAEAKGLKPGDQIVSVDGYAPSRENMWKM
                     YYRYYALMPARGMRLVVKSPDQAEPRELEVLAKIERGANVVDWGNLFVRFLRERRDVG
                     KDRTAEFGNELLIWQMTTFSTSEDHIDAMMGKASKFKSLLIDLRGNGGGYTDALSRLT
                     SYFFDREVKIADQKGRKETKPLLAKPRGSVYKGQVIVLIDSDSASASEVFARTLQLEK
                     RGTVLGDRSMGAVMTSRYYDHQTGVGQVLYFGNSITVGDVIMPDGKSLEKTGVTPDET
                     MLPTGADLAAKRDPVLSRAAEMLGVKLDPEKAGTLFPKEWRN"
     gene            2134..2931
                     /locus_tag="VGD38_06925"
     CDS             2134..2931
                     /locus_tag="VGD38_06925"
                     /inference="COORDINATES: protein motif:HMM:NF014344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase family protein"
                     /protein_id="HEY0727781.1"
                     /translation="MAKLTRSPGMFTKAIVRPPCANFASGLTSVDLGAPVFELALRQH
                     EAYCRALKDCGLSLKRLAPDEQHPDSTFVEDTAVLTVRGAVIARLGAASRLAETEEIE
                     RVLSPDFERLRVIREPGTVDGGDVCEAADHFFIGLSRRTNEAGASQLAGFLEELGYTS
                     TLIDIRNLSNILHLKSGLAYLGGNRVLVIDELKNLNSLAGYELINIRPEEAYAANCVW
                     VNDRVLIASGFPALQRQLEQLNYETVALDMSEFQKMDGGLSCLSLRF"
     gene            2953..>3707
                     /locus_tag="VGD38_06930"
     CDS             2953..>3707
                     /locus_tag="VGD38_06930"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF-type sigma factor"
                     /protein_id="HEY0727782.1"
                     /translation="MAENFDNAAAVKLLNQIMEAELAGVVRYTHYSLMVFGHNRIPIV
                     SWLRNEANTCLSHANEAGELVTHFGEHPSLKIGALLETHQHGINDILMESLKAEKDGL
                     ALYKQLLELVRDRSVLLEEYARRMIAEEELHIGEVNKMLRKPGEIGQYQASRSYGLKR
                     PPKQHEITQLLAEWSDGNQSALDELYPLVYDELHRLARRYMSRERQDHTLQTTALINE
                     AYVRLVDQKNVHWANRSHFFAISAQIMRRILID"
BASE COUNT          829 a         1027 c         1072 g          779 t
ORIGIN      
        1 ccaggatccc aattcgagtt ggcactacgg ctttggcgcc gcgggcgtcg gcatggtgct
       61 gggcctcgtc atctatgttc tcaatcaaag acatctcaaa aacgtcggaa acaagatccc
      121 gaaggcgtcg aaggagacga ctaccaagac cgcggtacgt gagcctttga ccggcgacga
      181 ctggaaacgc atcgccgtga tcttcatcct gttcctcttc acgatccttt tctggggagc
      241 gtacgaacag aaaggcgcga gtctcaacct gtttgccgat cgactggtgc gcgccgagat
      301 attcggaatg agtttccccg ttccgttcct ccagtcgttg acaggcatat tcgtgatcat
      361 gctggcgccc gtcttctcgt atatgtggat ccggatgaaa gaccgtcagc cttcgagtcc
      421 cgcgaagttt gcgctcgggc tcgtgttcat cggattggcg ttcatgctgc tggtgcccgc
      481 gtcgctgggc acggccgatg gcaaagtcac tttctggtgg ctggtggctc tttactttct
      541 cgccgtttgc ggtgagatgt gtttgagtcc ggttggtctg agcacggtga caaaactcgc
      601 gccgctaaaa ctggtcggta ttatgatggg cgtgtggttc ctggcggccg cgcttggcaa
      661 caagctcgcc gggtacctgt ccggcttctt tgattcgaac aaccccgagc ggctggcgat
      721 gctgtacggt ggcatcgctg ttggtctact cgtctccgcc gccattctcg ctttgtttac
      781 accgtcgatt aagaaaatga tgggcaaagt tacttaacaa ctcgaaagga aatttccccc
      841 attgaaattc aactcccgtt gcgcaatcct cgcgctgctc ttcctgtttg gagcaggcac
      901 acaacagttc acccaggcac agggactcgg caaattcgat cgcgacaacg ccatcgcgat
      961 gctcgacgcc gcgaaagacg acctcaaaaa gaactactac gatccggcct tacgcggcat
     1021 tgatatagaa acgaagttca aagacgcgaa agagcgcgtg aagcaagcca catcgcgcga
     1081 tcaattaatc atcactgtcg cgcaaacgct gctcgacttc gacgactcgc acacgttttt
     1141 cgttccacct tcacgcgctg ccaaagttga gtatggctgg gagatgcaga tggtgggcga
     1201 cgccgcgttc gtcaccggcg taaggccaaa gactgacgcg gaagcgaaag gactaaaacc
     1261 cggcgatcag atcgtttcgg ttgatggtta cgcgccgtcg cgcgagaaca tgtggaagat
     1321 gtactaccgc tactacgcgc tgatgccggc gagaggcatg cgtttggtgg tgaagagtcc
     1381 ggaccaggcc gaaccgcgcg agctcgaagt gctcgcgaag atcgaacgcg gcgcaaacgt
     1441 cgtcgattgg ggcaatctct ttgttcgttt cctgcgagaa cgtagagacg tcggcaagga
     1501 tcgcaccgcc gagtttggca acgaactgct tatctggcag atgacgacct tttcgacgag
     1561 cgaagatcac atcgacgcga tgatgggtaa agcgagcaag ttcaagtcgc tgctgatcga
     1621 tctgcgcggc aacggcggcg gctacaccga tgcgttgtca cgactgacca gctacttctt
     1681 cgatcgtgaa gtgaagatcg cggatcagaa gggccgcaag gagacgaaac cgctgctcgc
     1741 aaagccgcgc ggcagcgtct acaaaggaca agtgatcgtg ttgatcgaca gcgactcagc
     1801 ttccgcgtcc gaggtgtttg cacgaacgct tcagctcgag aagcgcggca ccgtgcttgg
     1861 agatcggagc atgggcgccg ttatgacctc gcgttactac gatcatcaaa cgggcgtcgg
     1921 tcaagtgctc tacttcggca acagcatcac ggtcggcgac gtgatcatgc ctgacggcaa
     1981 aagcctcgag aaaaccggcg tcactcccga cgagacaatg ctgccgaccg gtgcggatct
     2041 ggccgcgaaa cgcgatccgg tgttgtcgcg tgcggcggaa atgctcggcg tgaaactcga
     2101 tccggaaaaa gcgggcacgt tgttcccgaa ggaatggcga aactgacgcg atcgccgggc
     2161 atgttcacca aagccattgt ccggccgcca tgcgcgaact ttgcttcggg tctgaccagt
     2221 gtcgatctgg gggcgccggt tttcgaactc gcgcttcgac aacacgaagc ttattgccgt
     2281 gcgttgaaag attgcggttt gagtctgaag cgcctggcgc cggacgaaca acatccggat
     2341 tcaacgttcg tcgaagacac cgcggtcttg accgtacgcg gcgccgtcat tgcgcgtctg
     2401 ggagcggcga gccgtctcgc cgaaaccgaa gagatcgagc gcgttttaag tccagatttc
     2461 gagcggctgc gcgtgattcg cgaacccgga acggtcgacg gcggcgacgt ttgtgaagcc
     2521 gccgatcact tcttcatcgg cctttcgcgc cgcacgaatg aagcgggcgc aagccagctc
     2581 gccgggttcc tggaggagtt gggctacact tcgactttga ttgacatacg caacctgagt
     2641 aatatcctcc acttaaaaag cggactggca tatctcggcg gcaatcgagt gctggtcatc
     2701 gacgaactga agaatttgaa ttcgctcgca ggctacgagc tcattaacat caggcccgag
     2761 gaggcgtacg ccgccaattg cgtttgggta aacgaccggg tcctgatcgc gtccgggttt
     2821 ccggcgttgc agcggcagtt ggaacagttg aattacgaaa ccgtcgcgct cgacatgtcg
     2881 gagtttcaaa aaatggatgg cgggctcagt tgtctgtcac tgaggttttg aaagggtttt
     2941 taaggaggac taatggcgga aaattttgat aacgcggcag cagtcaagct tctcaatcag
     3001 atcatggaag ccgaactcgc cggcgtcgtt cgttacacgc attactcatt gatggttttt
     3061 ggtcacaacc ggattccgat cgttagctgg ttacgcaacg aggccaacac ctgtctctcg
     3121 cacgcaaacg aggcgggcga gctcgtcacg catttcggcg aacatccttc gctgaagatc
     3181 ggcgcgctgc tcgaaacaca ccagcacggc atcaacgaca ttctgatgga gtcgctgaaa
     3241 gccgaaaaag acgggctggc cctttacaaa caacttttag agctggtgcg cgaccgctca
     3301 gtcttgctcg aagagtacgc tcgccgcatg attgccgagg aggagctcca catcggtgaa
     3361 gtgaacaaga tgttgcgtaa gccgggcgag atcggccagt accaggcatc acgtagctac
     3421 ggattgaaac gaccaccgaa gcaacatgaa ataacccaac ttctcgctga gtggagcgac
     3481 ggaaaccagt ccgctctgga cgagttgtat ccactggtct acgacgaatt gcaccggctc
     3541 gcccggcgtt acatgagccg tgaacgacag gaccatactt tacaaaccac tgcgctcatc
     3601 aacgaagcct acgtccgcct ggtggaccaa aagaacgtcc actgggccaa ccgctcgcac
     3661 tttttcgcta tctcggccca gatcatgcgg cggattctga tcgatca
//
LOCUS       DASWTX010000453         1757 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_355164, whole genome shotgun sequence.
ACCESSION   DASWTX010000453 DASWTX010000000
VERSION     DASWTX010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1757)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1757)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1757
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355164"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..438
                     /locus_tag="VGD38_06935"
     CDS             <1..438
                     /locus_tag="VGD38_06935"
                     /inference="COORDINATES: protein motif:HMM:NF012759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantetheine-binding protein"
                     /protein_id="HEY0727783.1"
                     /translation="LPAQFVVIDALPLGANGKVDRNALPAPGASRPAIRASYAAPQTP
                     LEQTIAEVWREFLQLDTVGVNDSFFELGGHSLLLVLVHETLQQRLRREVAIADLFKFP
                     TVRALARHLSGSSPKQVESSLNRRRAGERQAALKARNFMKKGN"
     gene            441..1124
                     /locus_tag="VGD38_06940"
     CDS             441..1124
                     /locus_tag="VGD38_06940"
                     /inference="COORDINATES: protein motif:HMM:NF025871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing redox enzyme family protein"
                     /protein_id="HEY0727784.1"
                     /translation="MATPALSTVDTLPANKVRDELVTCLKELKDDCGTLPRELAVVIL
                     GQWFHPLHYFPVFLSRLISVTPSVEAQTYISRILWEELGEGDPQRAHEKIYVQTMVDG
                     GFDRTQFTEAPALAATRKLVDGYERASSEYLSGLGFLYGTEVVDLQMVATIGALMKRS
                     TGLRTLPWVDIHVQQEPGHVESSTQTLDHALDHPLNIADQHRVVTHAEEMWTLWKDFF
                     QSIRREILK"
     gene            1124..>1757
                     /locus_tag="VGD38_06945"
     CDS             1124..>1757
                     /locus_tag="VGD38_06945"
                     /inference="COORDINATES: protein motif:HMM:NF012337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyketide synthase"
                     /protein_id="HEY0727785.1"
                     /translation="MSETEQFAYEVAVVGLSGRFPGARNVDEFWKRLCAGVESITFFH
                     DGDPNYVKAEGVLDDVELFDASFFGFTPREAATLDPQHRIFLEESWAALETAGYNAGS
                     YLGRIGVFAGESLNTYFLNNLYPNRKLLESLGASQVVIANDRDYLATQVSFRLNLKGP
                     SFTIQTACSTSLVSVHLACQSLLNRECDMALAGGVSVSVPQGIGGHYQEGG"
BASE COUNT          357 a          511 c          523 g          366 t
ORIGIN      
        1 ctgccggcgc agtttgtcgt gatcgacgca ttgcccctgg gtgcaaacgg caaagtagat
       61 cgtaatgccc tacccgcgcc cggcgcctcg cgacccgcga tacgggcatc ttacgcggcg
      121 ccacaaacac cactcgagca gacgatcgcc gaagtgtggc gagagtttct tcagttagac
      181 acagtcggcg tcaacgatag cttcttcgag ctcggcggac attcattgct actcgtgctg
      241 gtccacgaaa cgttgcagca acgcctccga cgcgaagtcg cgatcgcaga tctgttcaag
      301 ttcccgacgg tgcgcgcact ggcgcgccac ctcagcggca gttccccgaa acaagtagag
      361 tcgtcgctca atcgccggcg cgcaggcgaa cgacaagcgg cgctcaaagc acggaatttt
      421 atgaagaaag gtaattgaac atggcaaccc ctgcgttatc tacggtcgac actttaccgg
      481 cgaacaaagt gcgcgatgaa cttgtaacct gcctcaaaga gctgaaggac gactgcggca
      541 cgctgccccg cgagctcgcg gtcgtgatcc tgggccagtg gtttcatccg ctgcactact
      601 tcccggtgtt cctctcgcgc ctgatctcgg taaccccgag cgtcgaggcg cagacctata
      661 tttctcgcat tctttgggaa gaactcggcg agggcgatcc ccaacgcgct cacgaaaaga
      721 tctacgtgca gacgatggtt gacggcggtt tcgaccggac gcagttcacc gaagcgcctg
      781 cgctcgccgc gacgcgcaag ctggttgacg gatacgaaag agcatcgagc gagtatcttt
      841 caggtctcgg ttttctttac ggcacggaag tcgtcgatct tcaaatggtc gcgacgattg
      901 gcgcgctgat gaaacggtcg acgggtttgc gcacgctgcc gtgggtagac attcacgtcc
      961 agcaggaacc gggacacgtc gagagctcga ctcaaacgtt ggaccacgcc ttggaccatc
     1021 cgttgaatat cgccgatcag caccgcgtgg tgacacacgc ggaagagatg tggacgctgt
     1081 ggaaagactt cttccaatcg atccgccggg agattctgaa gtaatgagtg aaacggagca
     1141 gttcgcgtac gaagtcgccg tggttggtct atccgggcgg tttccgggtg cgcggaacgt
     1201 cgatgagttt tggaagcgtc tgtgcgcagg cgttgagtcg atcacgttct tccacgacgg
     1261 cgatccgaat tacgttaagg ccgaaggcgt gctcgacgac gtcgaactgt ttgacgcttc
     1321 gttcttcggc ttcactccgc gtgaagcagc gacgctcgat ccgcagcatc gcatctttct
     1381 cgaagagtcg tgggcggcac tcgaaactgc cggttacaac gccgggtctt acctcggccg
     1441 catcggcgtg tttgcgggcg agagcctgaa cacttacttc ctgaacaatc tctacccgaa
     1501 tcgcaagctg cttgaatcac tcggcgcgtc gcaggttgtg attgccaacg accgcgacta
     1561 tctcgcgacg caggtctcgt ttcgtctcaa cctgaagggg ccgagcttca cgattcagac
     1621 tgcgtgctcc acgtcgctcg tctcagttca tctcgcgtgt cagagtctgc tgaatcgcga
     1681 gtgtgacatg gcgctcgcgg gcggtgtttc ggtgagtgtg ccgcaaggca tcggcggtca
     1741 ttatcaggaa ggcggga
//
LOCUS       DASWTX010000454         5124 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_135305, whole genome shotgun sequence.
ACCESSION   DASWTX010000454 DASWTX010000000
VERSION     DASWTX010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5124
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135305"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..757)
                     /locus_tag="VGD38_06950"
     CDS             complement(<1..757)
                     /locus_tag="VGD38_06950"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0727786.1"
                     /translation="MAFDKAKVLKAAEKFLSQGKINSAIKEYRQIVDNDTDDLTTLNM
                     LGDLYVRAGKKEEATQCFERIAEHYGAQEFHLKAIAMYKKIERLRPRDPHIAYKLAEL
                     YATQGLVHDARAQYLVVADAYTRSGDNKRTLDVLHKIADLDPNNTEIRLKLADGYVKE
                     NMRREAADAYVQAANRLHQTNAFDKALDAYSKALQLVRDDREALRGMLETHIARGTAD
                     EAAEVLEHAVEGREDDAELVSMLARAYLEAEDPQ"
     gene            940..2370
                     /locus_tag="VGD38_06955"
     CDS             940..2370
                     /locus_tag="VGD38_06955"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HEY0727787.1"
                     /translation="MGQRIAIAGLLIYVAFAPHSVAASAIGVAIAGIGWVIRSVRTRS
                     LGLSRSKFDLIIVLLLVWTGLSAVLSEEPSISIPKLTSQWSVFIFYLTRAVITRRSAL
                     YLVGVLILSGCVGTLYSAFDLIRGRGVVVESIAPGSPFGKLEIFPGDTIWRVGGRRVY
                     SVGDVDGILRSTPVNTPLTVSIISQGEHVDRRGLIFSSVGSSSPSGLTGSLRNHRFRA
                     SGWTRHYETFAEILQILAQLALGFALAHLRNHGPNKYFRIALVAAALLALGLALTAMR
                     TVIVAFALGACLVAWRSLRGAHKVVFVFALFFVIAFGAVVVSQTRARNALALGDPSSM
                     LRFQIARVGLSRIPLHPVFGHGMDAMKRHWNEWGFPGKDILHLHSTPLQLAFDRGLPA
                     LVFWLWMMALFWTEIAAGEKRAADLSDTHVYGILLGGLGALTGFLASSLVNYNYGDGE
                     AVMLFWWLMGVCVFFTSRDPLVRSGP"
     gene            2367..2876
                     /locus_tag="VGD38_06960"
     CDS             2367..2876
                     /locus_tag="VGD38_06960"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY0727788.1"
                     /translation="MTHPQANEAASYYFGYIDLARSENIVTFLDEQLPATMSFLEGIS
                     EEQSLRRYEPDKWTMRQVLNHVNDGERIFLGRALWFARGFTDPLPSFDQEIAVAGANA
                     NDTPWSQLVDEFRTVRLGTLSFFRNLPSEAWYRTGVASDNPFTVNALAYIIGGHVAHH
                     VGVLKERYL"
     gene            3073..3642
                     /locus_tag="VGD38_06965"
     CDS             3073..3642
                     /locus_tag="VGD38_06965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727789.1"
                     /translation="MKRCPQCEFIYEDDQSLCDMDGALLVFDSRSLPNLHALAPVDVP
                     AARVAHKAHWRHRTFPAMAALILATVLSLVYFVTSQRGGSPVNVPAVNLPASNLVTPA
                     AAANPTPEPPPATEASGAAPASTASASAAKEQPETTKAAATAPARKATSKTSTTTQPK
                     PAPEAKKDDSKVGSILKKTGRILKKPFKL"
     gene            3683..4525
                     /locus_tag="VGD38_06970"
     CDS             3683..4525
                     /locus_tag="VGD38_06970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727790.1"
                     /translation="MKRCPQCLFIFPETDTRCDFDNTPLVVVDDAVIESAGSGVAATA
                     SGAPAAASGAPAASGAPAASGAAAATASRASAAASAAPAAAASGVPTAAAEPAASATV
                     AAAASAAKKKRTAASKKRVAGSKKGARKKGAAITALVGFFVFGLAALFVYSSLSSRED
                     EVAEIPPVVVMSMAPVAAPLVAPPPVATASSSEAAASPAPSPRDGAERTATSHTRTTV
                     TPVSTSGPGMGKKLGGKPAILLTSGAKIDADEVWRTRDGIWYRRAGIVTLLKHNRVKA
                     IVNQ"
BASE COUNT          906 a         1447 c         1601 g         1170 t
ORIGIN      
        1 cttgcggatc ttccgcttcg agataagcgc gggccagcat cgaaacgagt tcagcatcgt
       61 cttccctgcc ctcgaccgcg tgttcgagca cttcggcggc ttcgtcggca gtgccgcgcg
      121 cgatgtgcgt ttcgagcatg ccgcgcagcg cttcgcggtc gtcgcgcacg agttgcagtg
      181 ctttggaata ggcgtcgaga gctttgtcga acgcgttcgt ttggtgcaaa cgattcgcgg
      241 cctgcacgta agcgtcggca gcttcgcgac gcatgttttc cttgacgtag ccgtcggcga
      301 gcttgagacg aatctcggtg ttatttggat cgaggtcggc tatcttgtgc aggacgtcga
      361 gagttcgctt attgtcgccg gagcgcgtgt aagcatcggc gacgacgaga tactgcgcgc
      421 gggcgtcgtg gaccagtccc tgggtggcgt agagttccgc gagtttgtaa gcgatgtgtg
      481 gatcgcgcgg gcgaaggcgc tcgatctttt tgtacatcgc gatggctttg agatgaaatt
      541 cctgcgcgcc gtagtgttcg gcgatgcgtt cgaagcactg agtggcttct tcttttttgc
      601 ccgcgcgaac gtagagatcg cccagcatat tcaaggtggt aagatcgtca gtgtcgttat
      661 cgacgatctg ccgatactcc ttgattgcgg agttgatctt cccctgagaa aggaatttct
      721 cagcggcttt tagaaccttc gctttgtcga aagccattag gaatcttagg tatcattaac
      781 acggacgacg tcggcggctt taacgtagca gcgggcagcg ggacaaagcc attcagttac
      841 gcgcttgtca gaaactccac ttagcaactc cggcaaacag ccgcgagata cgctaacatg
      901 cgtaaataaa gggtgtcaac gcagctattt agtgaaaatt tgggtcagcg gatcgcgatc
      961 gccgggctgc taatttacgt ggcctttgcg cctcattccg tggccgcgag tgcgatcgga
     1021 gttgcgatag cgggtatcgg gtgggtgatc aggtcggtcc ggacgcggag tctgggttta
     1081 agccgatcta aattcgatct gatcatcgtg ctgttgctcg tgtggaccgg gctgtcggcg
     1141 gtgttgtccg aggagccgtc gatcagcatt ccgaagctga cgtcgcagtg gagtgtgttc
     1201 atcttttatt tgacgcgcgc ggtgatcacg cgtcgttcgg cgctgtattt ggttggggtg
     1261 ttgattctgt cgggctgtgt ggggacgctt tacagtgcgt ttgatttgat acgcgggcgt
     1321 ggggtggtgg tggagtcgat tgcgccgggc agtccgtttg gaaagcttga gatttttccg
     1381 ggcgatacga tctggcgcgt tggggggcgg cgcgtttatt cggtgggtga tgttgatggg
     1441 attttgcgaa gcacgcccgt gaacacgccg ttgacggtaa gtattatttc gcagggcgaa
     1501 cacgtcgatc gcaggggatt aatcttttct tccgtcgggt cttcatctcc gtcgggattg
     1561 acgggcagtt tgcgaaatca tcgcttccgc gcttccggct ggacgcgtca ctatgaaacg
     1621 tttgcggaga tccttcaaat ccttgcccaa ctcgcgctcg ggttcgcgct ggcccaccta
     1681 agaaatcacg gtccgaacaa gtacttcaga atcgctttag tggctgcagc gttgttggcg
     1741 ttgggattgg cactcactgc catgcggacg gtgattgttg cgtttgcgct cggcgcgtgt
     1801 ttggtggcgt ggcgctcgct tcgcggcgcg cacaaagtgg tttttgtttt cgcgctgttc
     1861 tttgtgattg cgtttggcgc ggtggtcgtg tcgcagacgc gtgcgcgcaa tgcgctcgct
     1921 ttaggcgatc cgagttcgat gctgcggttt cagatcgcgc gggtggggct gtcgcgcata
     1981 ccgctgcatc cggtttttgg tcacggcatg gacgcgatga agcgacactg gaacgagtgg
     2041 ggctttcccg gcaaagacat cctgcacctg cattcgacgc ccttacagct cgctttcgat
     2101 cgcggtttgc cggcgctcgt gttttggttg tggatgatgg cgctgttctg gaccgagatc
     2161 gccgcgggtg aaaagcgcgc ggcggatttg agcgacacgc acgtttacgg aatcctgctc
     2221 ggcggcttgg gtgcgctgac ggggtttctc gcgagctcgc tggttaatta caactacggc
     2281 gatggcgaag cggtgatgtt gttctggtgg ttgatgggcg tttgcgtatt ctttacctcg
     2341 cgcgatcctc tggtaagatc cggtccatga cacatcccca agcaaacgaa gcagcctctt
     2401 attactttgg ttatatcgac ctcgcgcgca gcgaaaatat cgtcacgttt ctcgacgagc
     2461 agcttcctgc gacgatgtcg tttctcgaag gcatttctga agagcagtca ttgcgccggt
     2521 acgagccgga caagtggacc atgcggcagg ttttgaatca cgttaacgac ggcgagcgca
     2581 tctttctggg ccgtgcgctg tggttcgcac gcgggtttac ggatccgctg ccgagtttcg
     2641 accaggagat cgccgtggcg ggcgccaatg cgaacgacac gccgtggagc cagttggttg
     2701 atgagtttcg gaccgtgcgg ctcgggacgc tctcgttctt ccgcaacctt ccttctgagg
     2761 cgtggtaccg caccggcgtc gcgagtgata acccgttcac cgtcaacgcc ctcgcttaca
     2821 tcatcggcgg ccacgtcgcg caccacgtcg gggttctgaa agagcgctat ctctagtgaa
     2881 accatccacg gatcgtgccg ggtgtgtgcg atccgtggat ggcttttctg cccaaaaaag
     2941 catcagtttt tagattaaca ttgtttttcc acccgcttcg ggtgtactct tggaggcctg
     3001 cggaatactc acgcggcttt tcgtctccgc aggccccatc agcacgactg ccctactttc
     3061 caggagagcg ctatgaaacg gtgcccgcag tgtgagttta tttacgaaga cgaccaaagt
     3121 ctctgtgata tggacggcgc actgctcgtt ttcgactcgc gatcgctgcc gaatctgcac
     3181 gcgctcgcgc ctgtcgacgt gcccgcggcg cgggtggcgc acaaagctca ctggcggcac
     3241 cggacgtttc cggcgatggc ggcgctcatt ctcgcgacgg tgttgtcgct cgtgtatttc
     3301 gttactagtc aacgtggggg ttcgccggtc aacgtgccgg ctgtgaactt gccggcgtcg
     3361 aacctcgtga ctccggcggc cgcggcgaat ccgacgcccg agccaccacc ggcgactgaa
     3421 gcgagcggtg cggctccggc ttcgacggct tcggcttcgg cggctaagga acaacccgaa
     3481 acgaccaaag cggccgcgac tgcgcccgct cggaaagcca cctcgaaaac ttccaccact
     3541 actcaaccga agcctgcccc agaggcgaag aaagacgact cgaaggtggg ctcgatcctc
     3601 aagaagaccg gtcgcatcct caagaaaccc ttcaaactct gaggtgccga acggcttcgt
     3661 caagcccgac tgattgacga ccatgaaacg ttgcccccaa tgcctcttca tctttcctga
     3721 gactgatacg cgttgcgact tcgacaacac gccgctcgtc gttgtggacg atgcggtgat
     3781 tgagtcggcg gggagtggtg tggcggcgac ggcgagtggt gcgccggcag cggcgagtgg
     3841 tgcgccggca gcgagtggtg cgccggcagc gagtggtgcg gcggcggcaa cggcgagtcg
     3901 tgcgtccgcg gcggcgagtg ctgcgccggc agcggcggcg agtggtgtgc cgacagcggc
     3961 ggctgagcct gcggcttctg ctacggttgc ggctgcggct tcggctgcga agaagaaacg
     4021 cacggcggcg tcgaagaaac gtgtggctgg atcgaagaag ggtgcgcgga agaagggcgc
     4081 tgcgatcacg gcgctcgtcg gttttttcgt gttcggtctc gcggcgttgt ttgtttactc
     4141 aagtttgagt tcgcgtgagg acgaggtggc ggagattccg ccggttgtgg ttatgagcat
     4201 ggcgcccgtt gcggcgccgc ttgttgcgcc accgcctgta gcgaccgcct catcatctga
     4261 agccgctgct tctcctgctc cctcaccaag agacggcgcc gagcgcaccg caacgtccca
     4321 cacgcgcacg accgtcacgc ccgtttccac cagtggtccc ggcatgggca aaaaactcgg
     4381 cggcaagccc gcgatcctct tgaccagcgg cgcgaaaatc gacgcggacg aagtctggcg
     4441 cacccgcgac ggcatctggt accgccgcgc cggcattgtc accctcctaa agcacaatcg
     4501 cgtcaaagcg atcgtaaacc agtagccatc cgcctgccgt ggtttgcaca aatcccaccg
     4561 acgaagtcgg tggtcccttt ataccccacc tacatctaaa ctcttgaacg gacaatccca
     4621 ccgacgaagt cggtggttcg ttcatacccc acctaactca aaaggttgga tatgaaggac
     4681 caccgactgc gtcggtggga ttgcccgcct cgattggccg gaggtaggtt gggtatgaac
     4741 ctaccaccga ctccgtcggt gggattgccc gcctcccttg gccgagggta ggttggatct
     4801 gaaagtacca ccgactgcgt cggtgggatt ccgcgcccgc gtcgaattca ataacctcaa
     4861 tccaatcctc ccggacctca aaatccttgc cgctcgcgcg tgtgcgtgat agtctccgtt
     4921 gccccaatct ccacaaaaag ggaacattga catgaaaacc accgcgagaa cgctcatcgc
     4981 gttgagcgta gtcctcttag tctctctcac cctgctccct gcgtcgccgt caaccagcgc
     5041 acgcccgttc gcgccgctcg atctcgcggg cgaacttcac ggcgcgccgt ttcgcatacg
     5101 cgtccccgag aactggaacg gcac
//
LOCUS       DASWTX010000455         4600 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_417377, whole genome shotgun sequence.
ACCESSION   DASWTX010000455 DASWTX010000000
VERSION     DASWTX010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4600
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417377"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2090)
                     /locus_tag="VGD38_06975"
     CDS             complement(<1..2090)
                     /locus_tag="VGD38_06975"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY0727791.1"
                     /translation="MISRLFIDRPIVAIVIAIITVLVGLVAMQALPVAQFPDIIPPQI
                     IVSTTYTGADAVTIEQSVATPLEQQMNGVDDMLYMQSTNANDGSMALTVTFDVDTDPN
                     IDQVNVQNRVAQAQPNLPTDVSQFGLTMRKSTGLPMLVISLYSPNKTYDSLFLANYAN
                     ININDALYRVPGVGEVRLFGASDYAMRIWVKPDVLAKLGLTVPDLVSAVQQQSTVNPA
                     GQFGAEPAPAGKEKTYTIRAQGRLQTPEEFGQVVVRSNPDGSVVRLQDVARIELGALN
                     YQQFTRFNGQPGSIIAVFQTPGSNALAVAEGVKKTIEDLKQRFPADLDYKISLDTTLP
                     VTEGIHEIVETLVIAVVLVLLVVFLFLQNWRATLIPMIAVPVSLIGTFAVFPLLGFSI
                     NTLSLFGLVLAIGLVVDDAIVVVEAVEKHIEDGMSPRDATLQAMREVSGPVISIALIL
                     ASVFIPIAFVSGIQGRLNKQFAVTIAISVLISAFNALTLSPALSAMLLKPRRESKGVL
                     GRFFAGFNRLFERATRGYVNWSGVLIRKAVIGAVILVAFAVVDLLVVRQLPTSFLPEE
                     DYGYMFLNVQLPPAASLERTNEVSKKVESILSTTDGVEYYNAIGGFSLLTRVSASYNG
                     FFFVALKPWHERGSSELQARAILDKLNARMAQEIPEAAAFAFMPPSIPGLGNSGGFSF
                     WLQDRSGGSIDFLD"
     gene            complement(2091..3407)
                     /locus_tag="VGD38_06980"
     CDS             complement(2091..3407)
                     /locus_tag="VGD38_06980"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEY0727792.1"
                     /translation="MAIIVVVLGVIAIIVIARSGEPAQAAPTAVEVVVTPVKQENVPL
                     YREWVATTDGMVNAEIKAQVTGYLLKQDYKEGSLVKKGQLLFEIDPRPFQAALDQAKG
                     ELAQFQGQLEQALSNVTQAEAQLAQAASQVQQAQAQLSLAQANQVKTQLDVNKYAPLA
                     EQKAVTQQDYDNAIQTNKASGAQVEAAKAGVEAARSQLRVANAQIGTAKAAVATAKGQ
                     VENAKAAVKTAELNLGFTRIVAPIDGIAGIAQAQVGNLISTTSGPLTTVSTVDPIKVY
                     FTLNEQEYLEFTKRNLIDAQPGASVAQLELELVLADGTTFPQKGSFLFADRQVDPKTG
                     AIRLAGVFQNPGNLLRPGQFGRVRAVTGTRDNALLVPQRAVSELQGSYQVAVVGDDDK
                     IAIRPVKVGEKVDQNWIITDGLQAGERVVVEGTQKVRPGVVVKPIK"
     gene            complement(3760..>4600)
                     /locus_tag="VGD38_06985"
     CDS             complement(3760..>4600)
                     /locus_tag="VGD38_06985"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HEY0727793.1"
                     /translation="GKELIAHAIHNLSQRRERTLVKVNCAAIPTGLLESEFFGHERGA
                     FTGAIDRRVGRFELADKGTIFLDEVEDIPLELQSKLLRVLQEQEFERLGSSRTQRVDV
                     RIIAATNTDLAELVAEKKFRSDLYYRLNVFPITVPPLRERPEDIPLLVHFFANRFAQQ
                     MKKRIESVPKETMAALTSYNWPGNIRELQNLVERGVILSRGSTLEIPLTELKRQSRAS
                     TQTNNSTTLESVERDHILRVLSETRWVIGGPSGAAARLGMNRTTLNHRMRKLGISRPQ
                     PQS"
BASE COUNT          926 a         1373 c         1309 g          992 t
ORIGIN      
        1 tgatcgagaa agtcgatcga gccgccgctg cgatcctgta accagaaaga gaaaccgccg
       61 gaattgccga gaccgggaat cgacggcggc atgaacgcga acgccgcggc ttcgggaatc
      121 tcctgcgcca tgcgcgcatt cagcttgtcc aaaatcgcgc gtgcctgaag ttcggacgag
      181 ccgcgctcgt gccacggctt caacgccacg aaaaagaagc cgttgtaact cgcagacacg
      241 cgagtcaaca gactgaaacc gccgattgcg ttgtagtact cgacgccgtc agtcgttgaa
      301 agaatcgact cgaccttctt actaacttcg tttgttcgtt ccagcgacgc ggccggcgga
      361 agctgcacgt tgagaaacat gtagccgtag tcttcttcgg gaagaaaact cgtcggcagt
      421 tggcgcacga caagaagatc gacaacggcg aacgccacca ggatcacggc cccgatcacg
      481 gccttgcgga tcagcacgcc gctccagttc acataaccgc gcgtcgcgcg ttcgaacagg
      541 cgattgaacc cggcgaagaa ccggccgagc acgcccttcg attcgcgacg cggcttcagc
      601 aacatcgccg acagcgccgg cgaaagcgtc aacgcgttga acgccgagat gagcaccgag
      661 atcgcgatcg tcacggcaaa ctgcttgttc aaacgtcctt gaatgccgct cacaaacgcg
      721 atcggaatga acaccgacgc gagaatcaac gcgatgctga tcacgggtcc ggaaacttcg
      781 cgcatcgcct gtagcgtcgc gtcgcgcggc gacatgccgt cttcgatgtg tttctcgacg
      841 gcctccacca cgacgatcgc gtcgtcaacc acgagcccga tcgcgagcac gagtccgaat
      901 aatgaaagcg tgttgattga aaaaccgagc aacggaaaca cagcaaacgt gccgatcagc
      961 gacacgggca cggcgatcat cgggatcagc gtcgcgcgcc agttctgcaa gaagagaaac
     1021 acgaccagca gcacgagcac gaccgcgatc acgagcgtct cgacgatctc gtgaatgcct
     1081 tcagtgaccg gcagcgtcgt gtccaaagaa atcttgtaat cgaggtcggc gggaaagcgc
     1141 tgtttcagat cctcgatcgt tttcttcacg ccttcggcaa cggcgagcgc gttcgaaccc
     1201 ggcgtttgaa agacggcgat gatgcttccg ggctggccgt tgaaacgcgt gaactgctga
     1261 tagttcaacg cgccgagctc gatgcgcgcc acgtcctgca agcgcaccac cgaaccatcc
     1321 ggattcgatc gcaccacgac ctgcccaaac tcttcaggcg tttgcaaacg gccctgcgcg
     1381 cggatcgtgt aggtcttttc tttgcccgcc ggcgcaggct ccgcgccaaa ctgtcccgcc
     1441 ggattcaccg tgctttgctg ttgcaccgca ctgacgagat ccggaacagt cagaccaagc
     1501 ttcgcgagca catcgggttt gacccagatg cgcatcgcgt agtcgctcgc gccgaacaaa
     1561 cgcacctcgc caacgcccgg cacgcgatac agcgcgtcgt tgatgttgat gtttgcgtag
     1621 ttggcgagaa acagcgagtc gtaagttttg tttggcgagt aaagcgagat caccagcatc
     1681 ggcaatcccg tcgacttgcg catcgtcaaa ccaaactgac tgacgtcggt cggcaggttc
     1741 ggctgcgcct gcgcgacgcg gttctgcacg ttgacctgat cgatgttggg atcagtgtcg
     1801 acgtcgaacg tgacggtcag cgccatcgaa ccgtcgttcg cgttcgtgga ctgcatgtaa
     1861 agcatgtcgt ccacgccgtt catctgctgt tcgagcggtg tcgcgactga ttgttcgatg
     1921 gtgacggcgt cagcgccggt gtaggtggtt gaaactatga tctgcggtgg aatgatgtct
     1981 gggaactgcg ccaccggcaa cgcttgcatt gcgaccagac caactagaac tgtaatgatg
     2041 gcgataacta tcgccacgat gggtcgatcg ataaataatc gagaaatcat ttacttaatt
     2101 ggcttcacaa ccactcctgg ccgcaccttc tgcgtgcctt cgacaaccac gcgctcgccc
     2161 gcctgcagtc cgtcggtgat gatccagttt tgatcgactt tctcgccgac cttgaccgga
     2221 cggatcgcga tcttgtcgtc gtcgccgacc acggcgacct ggtaactgcc ctgcaattca
     2281 gacacggcgc gttgcggcac gagcagcgcg ttgtcgcgcg tgcccgttac ggcgcgaacg
     2341 cggccaaact gtccgggacg cagcaaattt ccgggattct gaaaaactcc cgcgagacgg
     2401 atcgcgcccg ttttcggatc gacttgccga tccgcaaaca ggaaactgcc tttttgcggg
     2461 aacgtcgtgc cgtcggcgag aaccagctcc aactcgagtt gggccacgct cgcaccgggt
     2521 tgcgcgtcga tcagatttcg cttcgtgaat tcgagatact cctgctcgtt cagagtgaaa
     2581 tagaccttga tcggatcgac agtcgaaacg gtcgtcaacg gaccactcgt cgtgctgatc
     2641 aagtttccga cttgcgcctg tgcgattccg gcgatgccgt cgatcggcgc cacgatccgc
     2701 gtgaagccga gattgagctc ggcggttttc accgcagcct tcgcgttctc aacctggcct
     2761 tttgcggttg cgacagcggc tttggccgtt ccgatctgcg catttgccac gcgcaactgc
     2821 gaacgtgcag cttcaacgcc tgctttcgcc gcttcgactt gcgcgcccga cgctttgttt
     2881 gtctggatcg cgttgtcgta gtcctgttgc gttactgctt tctgttcggc gagtggcgcg
     2941 tacttgttta cgtcgagttg ggtcttgacc tggttcgctt gtgcgagtga aagctgcgcc
     3001 tgtgcttgtt gcacctggct ggcagcttgc gcgagttgcg cttcggcttg cgttacgttc
     3061 gaaagcgcct gttcgagttg accctgaaac tgggccagct cgccctttgc ctggtccagc
     3121 gcggcctgaa atggacgcgg atcgatctcg aagagcaact ggcccttctt caccagcgag
     3181 ccttccttgt aatcctgttt caggagataa ccggtcacct gcgctttgat ttcggcgttg
     3241 accatgccgt cggtggtcgc gacccactcg cgatagagcg gcacgttttc ctgcttgacc
     3301 ggagtcacta cgacttcaac cgctgtgggg gccgcctgcg ccggttcacc tgaacgcgca
     3361 atgacgatga tggcaatcac gcctaacacg acgacgatga tagccattga agcgagtaac
     3421 ttttgtctgc tgagaaggtt tttggtggac cttaggattg tcacgatctt gccccgttct
     3481 gattttgaaa acacgaagtg ggtgaacttg cgcccgaacc cctgccagtt ccaagttcac
     3541 ccacttttgg aacacaggca ccgcccccca gctcggcctg tgttactcca ctacgtattg
     3601 cttgcccgcc ctttgctcgt caccgccctt gctcgattgc cgccctctgt ccgttcgggg
     3661 tggtcttata gcaacaggct tgccaaacaa gaatccgtgg gatctgtgta ggaagtgctt
     3721 atcgcggtga caacatgtcg ccaccatgac gagtgattgt cacgattgtg gttgaggacg
     3781 gctgatgccg agtttgcgca tgcggtgatt gagtgtcgtg cgattcatgc cgagacgcgc
     3841 cgcggcccca cttggaccgc cgatgaccca acgcgtttca ctaagcacac gaagaatgtg
     3901 atcgcgttcg acagattcga gcgttgttga attgttggtt tgcgttgaag cgcgtgactg
     3961 gcgtttcaac tcagtcaacg ggatctcgag cgttgatcca cgcgagagaa tcacgccgcg
     4021 ttctacgaga ttttgcagct cgcgtatgtt gccgggccag ttgtaactcg tcagcgcggc
     4081 catcgtttcc ttcggcacgc tctcgattcg cttcttcatc tgctgcgcaa aacgattcgc
     4141 gaagaagtga acgagcagcg gaatgtcttc cggacgctct cgcaacggcg gcaccgtgat
     4201 cggaaacacg ttgagccgat aataaaggtc gctgcgaaac ttcttttccg ccaccagctc
     4261 cgcgagatcc gtgttggtgg cggcgatgat gcgcacgtca acacgctgcg tgcgcgaact
     4321 gccgagacgt tcgaattcct gttcctgcag cacgcgcaac agcttcgact gcaactcgag
     4381 cggaatgtct tccacttcgt cgaggaagat cgtgcccttg tcggcgagtt cgaaacggcc
     4441 cacacggcga tcgatcgcgc ccgtaaacgc gccgcgttcg tgtccgaaaa actcgctttc
     4501 gagcagaccc gtcggaatcg cagcgcagtt gactttaacg agcgtgcgtt cgcgacgctg
     4561 gctcagattg tgaatcgcgt gcgcgatcag ttctttgccc
//
LOCUS       DASWTX010000456         2081 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_200222, whole genome shotgun sequence.
ACCESSION   DASWTX010000456 DASWTX010000000
VERSION     DASWTX010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2081
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200222"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..404
                     /locus_tag="VGD38_06990"
     CDS             <1..404
                     /locus_tag="VGD38_06990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727794.1"
                     /translation="QILTTVAVTTAVWLVATFATAPEPMEKLTSFYRNVHPAGTWWRP
                     VARAAGIPERTGEIWPNLFNWLLGIVLVYSTLFGIGEIIFGTWPRVLLFLVTAAVAGA
                     IMIWNLNRTGWAGLSESAEPRVGDIVAEGAD"
     gene            404..1366
                     /locus_tag="VGD38_06995"
     CDS             404..1366
                     /locus_tag="VGD38_06995"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEY0727795.1"
                     /translation="MPDRDNGPDQVFAVDLGGTYLRIALVDGSGKIHDQLKQRTPKGS
                     SPDLIVDALAAAADKWSSNGRHIAAVSIMVPGTVDNNNAVVVQAPNLPSLTNFPLQAV
                     LEERFGWPVLLENDANAAAVGEMWLGAARGCRDVVSVTLGTGVGGGVILDGELWRGAH
                     GSAGEIGHTTVDPFSGLKCKCGNIGCLELFASATAVVRMTRENLSRFPKSVLNSEELD
                     AEKVYYAGRDGDELALSVFKKFGVYLGIGLANLINIIDPEIIVIAGGVVNGWDLFAPH
                     MQHEVNERAVRVTAQQVQIAAAQCGDNAGLLGAARLAFVRLGSE"
     gene            1363..>2081
                     /locus_tag="VGD38_07000"
     CDS             1363..>2081
                     /locus_tag="VGD38_07000"
                     /inference="COORDINATES: protein motif:HMM:NF015052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727796.1"
                     /translation="MTALIIHGHFYQPPRENPWTGEVEAEPSAAPYHDWNERIHAECY
                     APNASVNNYARISFNFGPTLLSWLELHHPDTYQHIIAADRESAAQRGGHGNAIAQAYG
                     HAILPLCNERDRLTQVIWGLADFRFRFGREPEALWLPETAANDSTLALLIEQGLRYVI
                     LAPDQAKRVRVDSEWIDVCGGKVDTTRAYRFEHPTDPGRSIAVFFYDGPLARAIAFEK
                     ALTSSRGRVERFVHAAQRGDLV"
BASE COUNT          403 a          567 c          651 g          460 t
ORIGIN      
        1 tgcaaatcct gacgactgta gccgtcacaa cagccgtatg gctggtggcg acttttgcca
       61 cggctccgga accgatggaa aaactgacga gcttctatcg caatgtccac ccggccggga
      121 cctggtggcg gcccgtggcg cgagctgccg gcattcccga gcgtaccggc gaaatttggc
      181 ccaacctgtt caactggcta ttgggaatcg tgctcgttta ctcaaccttg ttcggcattg
      241 gcgagattat tttcggcact tggcccaggg tgttgctgtt tctcgtgacc gccgcagtgg
      301 caggcgccat tatgatttgg aaccttaacc gcaccggttg ggcgggcttg tcggaatctg
      361 ccgaaccgag agttggcgat atcgttgctg aaggcgccga ctgatgccgg atagagacaa
      421 cggcccggac caggtttttg cagtcgactt aggtggaacg tatctccgca tagcactcgt
      481 cgacggttcc ggcaaaatcc acgatcagct taaacagcga acgccgaagg gtagttcgcc
      541 tgacctcatc gtcgacgcgc tcgcggctgc ggccgacaag tggagcagca acggccggca
      601 tatcgcagcg gtgtcgatca tggtgccggg cacggttgat aacaacaacg ccgtggtggt
      661 ccaggcgccc aatcttcctt cgctcaccaa cttcccatta caagcagtgc ttgaagaacg
      721 gttcggctgg cccgtgttgt tggagaacga tgcgaacgcc gcggctgtcg gcgagatgtg
      781 gctcggcgct gcgcgtgggt gtcgtgatgt tgtcagcgtc acgttgggaa cgggtgtcgg
      841 cggcggtgtg attctcgacg gcgagttgtg gcgtggggcg catggctctg cgggtgagat
      901 tggacacacg acagtcgatc cgttttcggg attgaagtgt aagtgcggga atatcggttg
      961 tctcgagttg tttgcgtcgg cgacggcggt cgtgcgtatg acgcgtgaga acctgtcacg
     1021 ttttccaaaa tcggtgttga atagtgaaga gctggacgcc gaaaaggttt actacgccgg
     1081 acgcgacggt gatgaactcg cgctgagcgt ttttaagaag tttggtgtgt atctcggcat
     1141 cggcctagcc aatctaatca acatcatcga tccggagatc atcgtcattg ccggtggcgt
     1201 tgtgaacggc tgggacttgt ttgcgcctca catgcagcac gaagtcaacg aacgtgcggt
     1261 gcgggtcacc gcgcagcaag tgcagattgc ggccgcgcag tgcggcgaca acgccggtct
     1321 gcttggagcc gcccgcctcg cgtttgttag actaggtagc gaatgacggc tttaataatt
     1381 cacgggcact tttaccagcc acctcgcgag aacccctgga caggcgaagt cgaagcagaa
     1441 ccgagcgcgg cgccgtatca cgattggaac gagcgcattc acgccgagtg ttacgcgccg
     1501 aatgcttcgg tgaacaacta cgcgcggatc agtttcaact ttggtccaac gctgctctcg
     1561 tggctcgaac ttcatcatcc cgacacttac caacacatca tcgcggccga tcgcgaaagc
     1621 gccgcgcaac gcggcgggca cggcaacgcg atcgcgcagg cgtacggtca cgcgattctg
     1681 ccgctgtgta acgaacgcga tcgattgacg caggtcattt ggggtttggc ggattttcgt
     1741 tttcgtttcg gccgcgagcc ggaagctttg tggttgcccg agactgcggc gaatgactcg
     1801 acgttggcgc tcttgatcga acagggtctt cgttacgtga tccttgcgcc cgatcaggcg
     1861 aaacgtgttc gtgttgattc ggaatggatc gacgtgtgtg gcggtaaagt cgataccacg
     1921 cgcgcgtatc gcttcgagca cccaacagac cccggtcgtt cgatcgcggt ttttttctac
     1981 gacggtccgc tagcgcgagc aatcgccttc gaaaaagccc ttacgtcaag tcgcggtcgt
     2041 gtggaaagat tcgttcacgc cgcacagcgt ggcgatctcg t
//
LOCUS       DASWTX010000457         2206 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_311539, whole genome shotgun sequence.
ACCESSION   DASWTX010000457 DASWTX010000000
VERSION     DASWTX010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2206
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311539"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..864)
                     /locus_tag="VGD38_07005"
     CDS             complement(<1..864)
                     /locus_tag="VGD38_07005"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0727797.1"
                     /translation="MRTRLRYKIFGGLRRVLILLLVVWTVVSLVTLLIELVPGDPAVA
                     VLGEQATPEQFAQFREKHGLDRPPFFFSFPEDDNGERHFAWHGADNRYVDYWSALLQG
                     DMGLSFRNDRPVSELILERYPATIELAIFAMIIAVLIAIPLGVIAGTNRGTIIDNTAS
                     VVALLGISLPSFVIGPMLVYIFAVKFRLLAHSGRFDWSDIILPAFTLGAALSAILTRM
                     VRSSVIEELNEDYVRTARAKGLSERTVVYKHVLKNGLIPVVTILGLQLGVLLAGAIIT
                     EKVFGWPGLGLL"
     gene            complement(1022..1747)
                     /gene="ubiE"
                     /locus_tag="VGD38_07010"
     CDS             complement(1022..1747)
                     /gene="ubiE"
                     /locus_tag="VGD38_07010"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: protein motif:HMM:NF001244.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052624 - 2-phytyl-1,4-naphthoquinone
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0042372 - phylloquinone biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HEY0727798.1"
                     /translation="MPDKTNAANEHAGRVREMFAGIAKRYDLLNHLLSGNVDKRWRRI
                     VAKRVREKLNLANIGSSRILDVACGTGDLSLTLFENTGARVVGTDFCRPMLEIAAGKI
                     PHRIPLIEGDALDLPFRDGAFEVVTIAFGLRNLASVEGGLAELRRVLKPGGWVAVLEF
                     SRPANAIMRPLFGLYFTRILPWMGGLVSGSRMAYSYLPASVQKFPDQEQLSLLIKQAG
                     FEQVQYENLTGGIAALHMGRRPE"
     gene            complement(1804..>2206)
                     /locus_tag="VGD38_07015"
     CDS             complement(1804..>2206)
                     /locus_tag="VGD38_07015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727799.1"
                     /translation="LANAKKVLDSLVTTPPTVAELDRAKAEVVNEAVVIGTKGEAVPD
                     AWLDADTYKLSTVQDQPALLRAVTPADVQRVAGRLFKSPAAVASVIVGEAEPLKAALQ
                     GRVQFEVLGEVSAPAPASKTPAKPAGNVIPR"
BASE COUNT          532 a          669 c          560 g          445 t
ORIGIN      
        1 caatagtccc aggccaggcc atccgaaaac cttctcggtg atgatcgcgc ccgcaagcaa
       61 aacgccgagt tgcaacccga gtatcgtaac gaccggaatc agcccgttct tcaagacgtg
      121 tttgtaaacc acggttcgct cgctcaaacc cttcgcgcgt gccgtgcgaa cgtaatcttc
      181 gttcaactct tcaatcaccg acgagcgcac catgcgcgtc aggattgcgg acagcgcggc
      241 gccgagcgtg aacgccggca ggatgatgtc actccagtcg aaacggcccg agtgcgcgag
      301 caagcggaat ttgacggcaa agatgtagac cagcatcggg ccgatcacaa aactcggcaa
      361 actgatgccg agcagtgcga cgaccgacgc tgtgttgtcg atgatggtgc cgcgattggt
      421 gcccgcgatg acgccgagtg gtatcgcgat cagcaccgcg atgatcatcg cgaagatcgc
      481 gagttcgatt gtggccggat agcgttcgag aattaattcg ctgaccgggc gatcgttgcg
      541 aaacgacagg cccatgtcgc cttgcaacag cgcactccag taatccacgt aacgattatc
      601 agcgccgtgc cacgcgaagt gacgctcgcc gttatcgtct tccgggaatg agaagaaaaa
      661 gggcggacgg tcgagaccgt gcttttcgcg aaactgcgca aactgttcgg gagtagcctg
      721 ctcgccaagg acggcgacag ccggatcacc gggcacgagt tcgattagca gtgtgacaag
      781 agagacgacg gtccaaacaa cgaggagcag aatcaacaca cggcgtaagc cgccaaagat
      841 cttatagcga agcctggtgc gcactgcggc gcatcataac acaccataaa aatcaaaaac
      901 gtagcccgag gtacgattcg aatactcgca cagccccgac aaccgcgcgc ttaccaaacc
      961 gcaccccgtg actacgtatc tggttgcaaa gtttagaacg ctgcaaccaa tcttcaaaaa
     1021 ttcactccgg ccttctgccc atgtgcaagg ccgcgatgcc acccgtcagg ttctcatact
     1081 gaacctgctc aaatcctgcc tgcttaatca ggagcgagag ttgttcctgg tccggaaact
     1141 tctgtaccga agccggcagg taactgtatg ccattcgcga accactgacc agtccgccca
     1201 tccacggtaa aattcgcgtg aagtacagac caaacaacgg ccgcataatc gcatttgccg
     1261 gtctcgaaaa ctcgagcact gccacccagc cgcccggttt caaaaccctt cgtagttctg
     1321 ccaaaccacc ctcgacactc gcgagattgc gcaagccgaa cgcgatcgtc accacctcaa
     1381 acgcaccgtc gcgaaacggc aaatcaagcg catcgccttc tatcaaaggt atccgatgtg
     1441 gaattttgcc cgcggcaatc tccagcatcg gtcgacagaa gtcggtaccg acaactctag
     1501 ctcctgtgtt ttcaaacaac gtcagcgata aatcgccggt gccacatgcc acatcgagaa
     1561 ttcgcgaact gccgatgttc gccagattaa gtttctcgcg gactctcttt gcaacgatcc
     1621 ggcgccatcg cttatcgacg ttaccggaga gcaagtggtt caaaagatca taccgcttcg
     1681 caatgcctgc aaacatctcg cgaacgcggc ccgcatgctc gtttgcggcg ttcgttttgt
     1741 caggcacagt aaaaacaaat ctcgtttgca tttggttgca agacgcttgc gaacactttg
     1801 cgattaccgt ggaataacat tgcctgccgg ttttgctgga gttttcgacg caggcgccgg
     1861 agcagaaact tcgccgagca cttcaaattg aacgcgtccc tgcaacgcag ccttcagtgg
     1921 ctctgcttct ccgacgatca ccgaggccac cgccgccggt gatttgaata accttcccgc
     1981 gacacgctga acgtccgcag gtgttaccgc tcttaacaac gctggttgat cctgcactgt
     2041 gctgagcttg taggtgtcag catcgagcca cgcatcagga acggcttctc ctttcgtccc
     2101 gatcacaacc gcttcgttca cgacttccgc tttggcccga tccaactcgg cgacagtcgg
     2161 cggagttgtt actaacgaat cgagcacttt cttggcgttc gctaac
//
LOCUS       DASWTX010000458         1730 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_265775, whole genome shotgun sequence.
ACCESSION   DASWTX010000458 DASWTX010000000
VERSION     DASWTX010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1730
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265775"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1730)
                     /locus_tag="VGD38_07020"
     CDS             complement(<1..>1730)
                     /locus_tag="VGD38_07020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727800.1"
                     /translation="KEGSPFLRYLRETKTPFAILINYASAQLSETDGPAVWALLNGEF
                     KDQFLGWISGESVGYVWELAFAELQISSTMTRPELLTRHREFYNSALARKWKSLFHVE
                     TGPMWDKLIPAQSTSSTSFAHALTDWGVKLLGMETAAVMPMTGMRIAFTRGAARQSGG
                     AFLYYHAPNFGDTATTFTKTQNFAGPDFFYHSRYGPSMGPSLSWYRKSYYLYYMSGAS
                     AIYLEQGGDQFFKPGPAEHPFQLNPLGRITDEFIRFAEKHPDRGTPYTPIAFLLDPAH
                     GFEMTDYPHWPFEVSAIDRSDRALRELFGVAYYPGLVVEGEPAIADRQPFVAGVFGDI
                     FDVLTTSAKDFSGYRAVVLGGRAAWNSSLISYVRNGGIVVLNSAQTGDVPQSLLGVQR
                     TNATAETTSAHCLAPGESAQDLNGQMFSYEKIELKGATTLIAAANGDPLVTVNKVGKG
                     SVVFAALPDLLGADERITPFAAHMLAHVFADATPVRVNGDVEYLINRTTSGWVVTLLN
                     NNGVYKTQQGMAQVDRNAYVDVKINLNSEKILSATDWISDAALKVQSDQINVRIAPGG
                     VAIVELKTGS"
BASE COUNT          395 a          539 c          442 g          354 t
ORIGIN      
        1 ctagagccag tctttagttc cacaatagca acgccgcccg gggcgatccg aacattgatt
       61 tgatcggatt gcaccttcag ggcggcgtcg ctgatccaat ccgtagcgct caagatcttc
      121 tcgctattca aattaatctt aacgtcaacg tacgcgttac gatcgacctg ggccattccc
      181 tgctgtgtct tgtatacgcc gttgttgttg agcagcgtga caacccaccc gctggtcgta
      241 cgattaatta aatattccac atcgccgtta actcgcacgg gcgtggcatc agcaaaaaca
      301 tgcgcgagca tgtgcgcggc aaacggcgtg atgcgttcgt ctgcacccag caaatccggc
      361 aacgcagcaa acacaacact tcccttgccc actttgttaa ccgtcacgag cggatcgcca
      421 ttcgccgcgg caatcaacgt cgtcgcgccc ttcaactcga tcttttcgta actaaacatt
      481 tgcccattga ggtcctgcgc gctctctccg ggcgctaaac aatgcgcgga cgtcgtttcc
      541 gccgtggcat tagtacgctg aactcccagc agcgactgcg gcacatctcc ggtctgcgcc
      601 gaatttagaa ctacgatccc accgttgcgc acgtaactaa tgaggctcga attccacgcc
      661 gcgcggccac ccaacacaac cgctcgataa ccactaaagt ccttcgcact cgtagtcaac
      721 acgtcaaaaa tatctccaaa cacacccgcc acaaacggct ggcggtccgc gatcgccggc
      781 tcgccctcga ccaccagccc agggtaatac gcgaccccaa acaactctct cagcgcccga
      841 tcgctgcggt ctatagccga cacctcaaac ggccagtgcg gataatccgt catttcaaac
      901 ccatgcgccg gatcgagcag aaacgcaatc ggcgtatacg gcgtgccccg gtccggatgc
      961 ttctccgcga aacgaatgaa ttcatcggta atgcgtccaa gcgggttgag ttgaaacgga
     1021 tgctcggccg gtccaggttt gaaaaactgg tcgccgccct gttcgagata gatcgccgac
     1081 gcacccgaca tgtaataaag gtagtaactc ttccggtacc acgacaacga tgggcccatc
     1141 gatggaccat aacgcgagtg gtaaaagaaa tccggtccag cgaagttctg cgtttttgtg
     1201 aacgtggtcg ccgtgtcgcc gaagtttggc gcgtggtaat agagaaacgc gccgcctgat
     1261 tgccgcgccg cgccgcgcgt gaacgcgatc cgcattcccg tcatcggcat cacggcggca
     1321 gtctccatac cgaggagctt cacgccccaa tcggtcagcg cgtgcgcgaa cgacgtgctc
     1381 gaggttgatt gcgccggaat cagcttgtcc cacattggac cagtctcgac gtgaaacaac
     1441 gacttccact tgcgtgccaa agcgctgttg taaaactcgc gatgccgcgt aagaagttca
     1501 gggcgcgtca tcgtcgaaga gatctggagt tccgcgaacg cgagttccca cacgtaaccc
     1561 acgctttcgc cggaaatcca gccaagaaac tggtccttga actcgccgtt gaggagcgcc
     1621 cacacggctg ggccatcagt ttcactcaac tgcgcggaag cgtaattgat cagaatcgcg
     1681 aacggggttt tggtttcgcg cagatagcgc aggaatgggc tgccttcttt
//
LOCUS       DASWTX010000459         6729 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_222076, whole genome shotgun sequence.
ACCESSION   DASWTX010000459 DASWTX010000000
VERSION     DASWTX010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6729
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222076"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..489
                     /locus_tag="VGD38_07025"
     CDS             <1..489
                     /locus_tag="VGD38_07025"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HEY0727801.1"
                     /translation="KVTYRLVFFDGEEAFCENWDDCGTEEKPDNTYGSRHYVSLLREK
                     NELQNTRALILLDMVGYKNLELGRDTLSTKWLQDIIWQTGRELGHEKIFVDRPEGVGG
                     DDHEPFLKAGVDAVDLIQLSGYPYWHQADDTIDKLSAQSMKIVGDTVLASLPKIVDRI
                     VK"
     gene            486..1538
                     /locus_tag="VGD38_07030"
     CDS             486..1538
                     /locus_tag="VGD38_07030"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: protein motif:HMM:NF012407.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEY0727802.1"
                     /translation="MKRIAVIPGDGIGPEVVREAVRVLKHLGETRDLQLKFVDFDWGA
                     DKFLKDGVTLPDGALKMLTEDFDAILAGAFGDPRVPSNKHAEDILLGMRRGLDLYINL
                     RPVRLLDTRLTPLANRQTSEIDFVVFRENTEGAYCGAGGFLKQGTTDEIALQEEVNTR
                     RGVERIIVAAFEYARAKGRKRVTMADKSNVQRFGGDLWQRVFKEVATTYPDIEANHQY
                     VDAMAMFMVLNPAQYEVIVSNNLFGDILTDLGAAIQGGLGLAASGNIHPGKVSLFEPV
                     HGSAPPLAGKGIANPIGAILTSAMMLEYLGFQTLSDEIEEAVRGAVSAKETTQDLGGE
                     LSTEQAGNAIIARLRK"
     gene            1584..2312
                     /locus_tag="VGD38_07035"
     CDS             1584..2312
                     /locus_tag="VGD38_07035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727803.1"
                     /translation="MNSGTGKLTTKTIAVIVIVAILNAVGLSPVVMVFVTGIVFVIWL
                     VTRRAQMREVERIFEFYVAADAILREEERRWYGFEIAEVIEHGESLVEMMPDPPPLHY
                     FALGALYQRLGNHEATVQYLSRLNEDEQYDETHRIVPSPQLRRYVTMLRRLEQHPAAE
                     PQTLAAVRNLERARQRNSAKLLTESRNVIETTAATVKPVEAPAPPPKEETYPASAPLS
                     SISAPPPITVVLRDVYQEETNANN"
     gene            2325..3569
                     /locus_tag="VGD38_07040"
     CDS             2325..3569
                     /locus_tag="VGD38_07040"
                     /inference="COORDINATES: protein motif:HMM:TIGR00200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HEY0727804.1"
                     /translation="MFETLTAEIVAIGSELLAPDRTDTNSLWLTEQLNRLGIEVKLKT
                     IVGDDDARLEETIKDAVRRSKVVIATGGLGPTEDDITRKITARALGRRLLLDEQVLAE
                     IRQRFQSFGVTMPERNSRQAMVIEDAVVLPNPNGTAPGMFIDHQGTAIVLLPGPPREM
                     RPMFENHVAERLAGRAGSLRVVRRLLRVAGMGESAVDEKIAPIYTQYDNPVTTILFNQ
                     SEIEVHLTARGRTEKEANDLLDKVSAQLEERLGNAVFSFAGETMEQVVGLKLSVGGYT
                     LSVAESCTGGLLAQRITDVPGSSKYFIEGVVTYANEAKTRALGVEPMLLLEHGAVSAP
                     VAEAMAEGIRKRAGTDFGLSITGIAGPGGGTEEKPVGTVFIALASDIKTEHRKLHLPG
                     DRHLIRWRSSQAALDLLRRRLL"
     gene            3573..4142
                     /gene="plsY"
                     /locus_tag="VGD38_07045"
     CDS             3573..4142
                     /gene="plsY"
                     /locus_tag="VGD38_07045"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR00023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008374 - O-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HEY0727805.1"
                     /translation="MLSLLALPIAYLIGSIPFGYLIVKLTSGADVRQTGSGGTGATNV
                     SRRAGKAAGVLTLVLDAAKGAIAVLIATWWSEAWVVALAAVAVIVGHIFPVWLGFRGG
                     KGVATAVGVFLVLAPFALLGAGIVFVAVVSFTRYVSLASVSAAASIPFLLWLQKAPLT
                     AAVVIALLIIFAHRGNIARLIKGTEPKFS"
     gene            4139..5092
                     /locus_tag="VGD38_07050"
     CDS             4139..5092
                     /locus_tag="VGD38_07050"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: protein motif:HMM:NF000940.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009331 - glycerol-3-phosphate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0047952 - glycerol-3-phosphate
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0046167 - glycerol-3-phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEY0727806.1"
                     /translation="MKRIAIIGAGSWGTALATVSARAGNPVHLWSRNPLKSVQIPASV
                     TLTSELNAALDQAELVLYAAPSHCARELFTAISPHLNDGAILVSAAKGIEIETGKRIS
                     EIVKEVAGTAHPFVCLSGPSFAKEVIAGHPTAIVAASKDAAAARTVQSELSFENLRIY
                     THADVIGTEIGGSVKNVMAIAAGMATGLGFGSNSVAALITRGLAEITRLARREGAQVE
                     TLMGLAGLGDLVLTCTGALSRNRFVGEELGKGKRLEEIVAELSEVAEGIKTARAVKQL
                     ADRASLEMPIVNEVNAVLYEGKSARDAVSELMSRPLREEAP"
     gene            complement(5099..6025)
                     /locus_tag="VGD38_07055"
     CDS             complement(5099..6025)
                     /locus_tag="VGD38_07055"
                     /inference="COORDINATES: protein motif:HMM:NF015438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC N-terminal beta barrel domain-containing
                     protein"
                     /protein_id="HEY0727807.1"
                     /translation="MRIGIVKEIYRFPVKSMAGEKLDDCSVGALGVTGDRGWALRDET
                     AGEMTQGTHFPQLILSSAHYREAPAPGFIPHVDMIFPDGSSIGSDASDVNERLTELLG
                     KRVSLWPIQPAENLEHYRRRSKTARVFGKLARVEVFREALPALTSFGPANKQMRTAFS
                     REPGEPIPDLSKLPAHVLEFTSPPGTYFKAFPIHLLTTASLETMARLNPSATWDVRRF
                     RPNFLIETEPQIEDFVEAGWHGRKLRIGGVELKCEIPTTRCGTTIQAQPGLAKDPAIL
                     RTIVRDADQSLGVYASVVQPGEVKVGDHVELG"
     gene            6096..>6729
                     /locus_tag="VGD38_07060"
     CDS             6096..>6729
                     /locus_tag="VGD38_07060"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727808.1"
                     /translation="MFKAFHTSRHSTAVRLFLQTALALALTTVAIHAQQRTAPATTPA
                     AKEWELLKPLQYRSIGPYRGGRSAAVAGVASQPFVYYYGATGGGVWKSTDGGINWESV
                     SDGSVFGTGSVGAIAVSDSDPNVVYVGMGESPIRGNVSHGDGMYKSTDAGKTWKRIGL
                     EDTRQIPRIRVHPRNPDLIYVAALGHVWGPNDQRGVVRSKDGGKTWERILS"
BASE COUNT         1449 a         1906 c         2026 g         1348 t
ORIGIN      
        1 aaggtcactt accggctcgt gtttttcgac ggcgaagaag cgttctgcga aaattgggac
       61 gactgcggca ctgaagaaaa acccgacaac acttacggca gccgtcatta cgtttcacta
      121 ctgcgcgaaa agaacgaact gcaaaacaca cgggcgctga tcctgctcga catggtcggt
      181 tacaaaaatc tcgagctcgg ccgcgacacg ctgagtacga agtggttgca ggacatcatc
      241 tggcaaaccg gccgcgagct cggtcacgaa aagatttttg tcgatcgtcc ggaaggtgtc
      301 ggcggcgacg atcacgaacc gtttctaaag gcgggagtcg acgcggtcga tctgattcaa
      361 ctctcgggtt atccttactg gcatcaagct gacgacacaa tcgacaagct ctcggcgcag
      421 agtatgaaga tcgtgggcga cacagtgctc gcgagtctgc cgaagatcgt ggacagaata
      481 gtcaaatgaa acgaatcgca gtcattcctg gtgatggcat tggtccggaa gtcgtgcgcg
      541 aagccgttcg cgtgctgaag catctcggcg aaacgagaga cttgcaactc aagtttgtcg
      601 acttcgattg gggcgccgac aagtttctca aagacggcgt cacgctgccc gacggcgcgc
      661 tcaagatgtt gacggaagac ttcgacgcga tcctcgcggg cgctttcggc gatccgcgag
      721 tgccttcaaa caagcacgcg gaagacatcc tgctcggcat gcgccgcggt ctcgatctct
      781 acatcaacct gcgtccggtg cgtttgctcg acacacgact cacgccgctc gcaaatcgcc
      841 agacgtcaga gatcgacttc gtcgtctttc gcgaaaacac ggaaggcgct tattgcggcg
      901 ccggcggttt cttgaaacag ggaacgacag atgagatcgc gttgcaggaa gaagtgaaca
      961 cgcgacgcgg agttgaacgc atcatcgtcg ccgctttcga atacgcgcgt gcgaaaggac
     1021 gcaagcgcgt cacgatggct gacaagtcaa acgtgcaacg ctttggcggc gatctgtggc
     1081 agcgcgtctt taaagaagtc gccacgactt atcccgacat cgaagctaat catcagtacg
     1141 tcgacgcgat ggcgatgttc atggtgctca acccggcgca gtatgaagtg atcgtgagta
     1201 acaatttgtt cggcgacatt cttacggatc tcggcgcggc gattcagggc gggctcgggc
     1261 tcgctgcttc gggcaacatt catccgggaa aggtgtcgct tttcgagccg gtgcacggca
     1321 gcgcgccgcc gctcgcgggc aagggaatcg cgaatccgat cggagctatt ctgacctcgg
     1381 cgatgatgtt agaatacctg ggtttccaaa cgttgagtga cgagatcgaa gaggctgtgc
     1441 gaggcgcagt ctcggccaaa gagaccacgc aggatctcgg tggtgagctt tctacagaac
     1501 aagccggcaa tgccatcatt gcgcggctac ggaaataact gagaaataac tgaattagaa
     1561 caaggaatag aaggggagga gttatgaatt ccggtaccgg caaactcacg acgaaaacga
     1621 tcgccgttat tgtcattgta gcgatcctca acgcagtggg actttcaccg gtggtgatgg
     1681 tgtttgttac cggaatcgtg tttgtgatct ggctcgtgac gcgccgcgcg cagatgcgcg
     1741 aggtcgagcg catctttgaa ttttatgtcg cggccgatgc gatactccgc gaggaagagc
     1801 gacgctggta cggcttcgag atcgccgaag tgatcgaaca cggcgaaagc ctcgtcgaga
     1861 tgatgcccga tccgccgccg ttgcattact ttgcgttggg agcgttgtat caacgtctcg
     1921 gtaatcacga agcgacggtg cagtacctct cgcggttgaa tgaagacgag caatacgacg
     1981 agacgcatcg catcgtaccg tcgccgcagt tgcgacgcta cgtgacgatg ttgcggcggc
     2041 tcgaacagca tcccgcggcc gaaccgcaaa cgctcgcggc cgtgcgcaat ctggaacgtg
     2101 cacgtcagcg caacagcgcg aagcttttaa cggagagccg taacgtgatc gagacaacgg
     2161 cagcaaccgt gaagcctgtt gaggctcccg cgccgccgcc gaaagaagaa acgtatcctg
     2221 cgtctgcgcc gctcagttcg atctccgcgc cgccgccgat cacggttgtg cttcgagacg
     2281 tttaccagga agaaactaac gctaacaatt aattgacgcc ttaattgttt gagacgctaa
     2341 cagcagaaat cgtcgctatc ggttccgagc tgctcgcccc ggatcgcacc gatacgaata
     2401 gtctctggct cacggaacaa ctcaaccgcc tcggcatcga agtcaaactc aagaccatcg
     2461 tcggcgacga cgatgcccgc ctcgaagaaa caatcaaaga cgctgtacgg cgatcgaaag
     2521 tcgtgatcgc caccggcggt cttggtccaa ccgaagacga catcactcgc aagatcacgg
     2581 cgcgtgcgct gggccggcgt ttgctgctcg acgagcaagt gctcgcggag attcgccagc
     2641 gttttcagtc gtttggcgtg acgatgccgg agagaaattc gcggcaggcg atggtgatcg
     2701 aagacgcggt cgtgttgcca aatccgaacg gcaccgcgcc cggcatgttt atcgatcatc
     2761 agggcacggc gatcgtgctg ttgcctggcc caccgcgtga gatgcgcccg atgtttgaga
     2821 accacgtggc ggaaaggctt gccggacgcg cggggagttt gcgcgttgtg cggcgcctgt
     2881 tgcgggtcgc gggtatgggc gagtcggcag tggatgaaaa gatcgcgccg atttacacgc
     2941 agtacgataa tccggtaacg acgatacttt tcaaccagag cgagatcgag gttcatctca
     3001 ccgcgcgcgg gcgcacggaa aaggaagcga acgatctact cgataaagtc tctgcgcagc
     3061 tcgaagaacg tttgggcaat gcggtgttct cgtttgcggg cgagacgatg gaacaggttg
     3121 ttggtttgaa gctctcggtt ggtggttaca cgttgtcggt cgcggagagt tgcactggtg
     3181 gattgctcgc gcaacgcatc actgacgttc ccggatcgtc gaagtacttc atcgaaggcg
     3241 tcgtgactta cgcgaacgaa gccaagacgc gcgcgcttgg cgtggaacca atgttgttgc
     3301 tcgaacacgg cgccgtcagc gcgccggttg cggaagcgat ggccgaagga attcgcaaac
     3361 gcgcgggcac ggacttcggt ctatcgatca cgggcattgc gggccccggc ggcggcaccg
     3421 aagaaaaacc cgtgggcacg gtcttcatcg ccctcgcgag cgacatcaag accgagcacc
     3481 gcaaactcca ccttcccggc gatcgccacc taatccgctg gcgctcctcc caagccgccc
     3541 tcgatctgct gcggcgcaga cttctttaga ccatgctttc actactcgct cttccaatcg
     3601 cgtacctgat cggctcgatt ccgtttggct acctgattgt gaaactgacg agtggcgcgg
     3661 atgttcgtca aacaggatcg ggtgggacgg gcgcgacgaa tgtttcgagg cgcgcaggga
     3721 aggcggcggg agttttgacg ctcgtgctcg atgccgcgaa gggcgcgatt gcggtgttga
     3781 ttgctacgtg gtggagtgaa gcgtgggtgg tggcgttggc tgcggtcgcg gtgatagtgg
     3841 ggcatatttt tccggtgtgg ttggggtttc gaggtggtaa gggggtggcg acggcagtgg
     3901 gagtttttct cgtgctcgcg ccttttgctt tgttgggtgc agggattgtt tttgtagcgg
     3961 tggtgtcgtt cacgagatat gtttcgctgg cttcggtcag cgctgccgcg tcgatcccgt
     4021 tcttgctttg gttacagaag gcgccgctca ctgcggcagt ggtgatagcg ttgctaatta
     4081 tcttcgccca ccgcggaaat atagccaggt taataaaggg aactgaaccg aagttttcat
     4141 gaaacggatt gctatcatcg gtgctggtag ttgggggact gcgttggcga ccgtctcggc
     4201 gcgcgcggga aatcccgttc acctctggtc gcgcaatccg ctgaaatccg ttcaaatccc
     4261 tgcctctgtg acgctcacga gcgaactcaa cgcggcactg gaccaagccg aactggttct
     4321 ttacgctgcg ccctcacact gtgcgcgcga actgtttacg gcgatctctc cgcacctcaa
     4381 cgacggcgcg attctcgtca gcgctgccaa aggcatcgag atcgaaaccg gcaaacgcat
     4441 ctccgagatc gtcaaagaag tcgccggcac tgcgcaccca ttcgtctgtc tctccggacc
     4501 atcgttcgcg aaggaagtca tcgccggcca tccgactgcc atcgtcgccg ccagcaaaga
     4561 cgcggccgcc gcacgtacgg tccaaagcga actgagtttt gagaacctgc gcatctacac
     4621 ccacgccgac gtgatcggca cagaaatcgg cggctcagtc aaaaacgtga tggcgatcgc
     4681 ggcgggaatg gcaactgggc tcggattcgg atcgaacagc gtcgccgcac tgatcacacg
     4741 cggcctcgcg gagatcacgc gtctcgccag acgcgaaggc gcgcaggtcg aaacgttgat
     4801 gggcctcgcc ggtttgggcg atctcgtgct gacgtgcacc ggcgcactct cgcgcaatcg
     4861 cttcgtcggc gaagagctcg gcaaaggaaa acggctcgaa gagatcgttg ctgagctgag
     4921 cgaggtggcg gaaggaatca aaacagcgcg cgcggtcaag cagcttgcgg atcgcgcgag
     4981 tctcgaaatg ccgatcgtga acgaagtgaa cgcagtgctc tacgaaggta aatccgcgcg
     5041 cgatgcagtc tcggaattga tgagccgccc gctgcgcgaa gaggcgccct gatcgtcttt
     5101 atcccagctc cacatgatcg ccgaccttaa cctctcccgg ctgaactacg cttgcgtaaa
     5161 ccccgaggct ttgatcggcg tcgcgcacga tggtgcgcag tatggccgga tccttcgcga
     5221 gccccggttg cgcctgaatc gtcgtcccac aacgcgtcgt cggtatttca catttcaact
     5281 caacaccgcc gatgcgcagt ttccttccgt gccacccagc ctcaacgaag tcttcaatct
     5341 gcggctcagt ttcgatcaga aagttgggac gaaaacgccg cacgtcccac gtcgcggacg
     5401 gattcaaacg cgccatcgtc tcgagtgacg ccgtggtgag caggtgaatc ggaaacgctt
     5461 tgaagtaagt gccgggcggt gaagtgaact caagaacgtg agccggcaac ttcgagagat
     5521 cgggaatcgg ttcgccaggc tcgcggctaa atgctgtccg catctgtttg ttcgccggac
     5581 caaaactcgt cagcgcgggt aatgcctcgc gaaacacctc gacgcgagcg agcttcccaa
     5641 acacacgcgc ggtcttcgat ctgcggcggt agtgttccaa attctccgcc ggctggatcg
     5701 gccacagcga aacccgtttg ccgagtagtt cagtcaaacg ttcgttgacg tcacttgcat
     5761 cgcttccgat cgacgagccg tccggaaaga tcatgtcgac gtgtggaatg aaaccgggag
     5821 caggcgcttc gcgataatgc gcagagctta gtatcaactg cggaaagtgc gtgccctggg
     5881 tcatctcgcc ggctgtttca tctcgaagtg cccaaccgcg atcgccggta acgcccagtg
     5941 ctccaacaga gcagtcgtcg agcttttcac ccgccattga cttcaccgga aaccggtaaa
     6001 tctctttaac tattccgatt cgcatagagg attgatatta ttcaaagccg caagccatca
     6061 ttctttcaag tgacaaagta aaggagccca tccgaatgtt caaggcgttc catacgtctc
     6121 gccacagcac cgctgtacgt cttttcctac agacagcttt agcgcttgcg ctcaccaccg
     6181 tcgcgataca cgcgcagcaa cgaacagcgc cggccacaac accggccgcg aaagagtggg
     6241 aactgctcaa gccgttgcag tatcgcagca ttggtccata ccgcggcgga cgctcagccg
     6301 cagtcgcggg cgtagcgtcg cagccgtttg tttattacta cggcgcgacc ggaggcggcg
     6361 tctggaaatc gactgacggc ggcatcaact gggaatcggt gagcgatggc tccgtcttcg
     6421 gcaccggctc cgtcggcgcg atcgcggtct cggactccga tccaaacgtg gtctacgtcg
     6481 gcatgggcga gtcgccgatt cgcggcaacg tttcgcacgg cgacggcatg tacaaatcga
     6541 ctgacgccgg caagacgtgg aagcgcatcg gtctcgaaga cacgcgccag atcccgcgca
     6601 tccgcgttca tccgcgcaac cccgatctca tttacgtcgc cgcgctgggc catgtgtggg
     6661 gcccaaacga tcaacgcggc gtagttcgtt cgaaagacgg cggcaaaaca tgggagagaa
     6721 tcctgtcgc
//
LOCUS       DASWTX010000460         1884 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_200226, whole genome shotgun sequence.
ACCESSION   DASWTX010000460 DASWTX010000000
VERSION     DASWTX010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1884)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1884)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1884
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200226"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(150..377)
                     /locus_tag="VGD38_07065"
     CDS             complement(150..377)
                     /locus_tag="VGD38_07065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727809.1"
                     /translation="MLDATTGTPKGTRAATPKAFRIYAKHEGNNAEGVSEFQPRVGTT
                     LGLIPTPASNAESVGECLPKILPTLSALDVL"
     gene            441..>1884
                     /gene="acs"
                     /locus_tag="VGD38_07070"
     CDS             441..>1884
                     /gene="acs"
                     /locus_tag="VGD38_07070"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF001208.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HEY0727810.1"
                     /translation="MSTVTTNIESVLQEERVFPPPPEFSTKAHIKSEAEIESLRAEAH
                     ADPEAFWARMAEELHWFKKWDTVLKWDPPHAEWFGGGKLNIAYNCLDRHLATWRRNKA
                     ALIWEGEPGETRTYTYQQLHTEVCKFANVLKHAGIQRGDRVALYMPLIPELAISMLAC
                     ARIGATHSVVFGGFSSSALIDRINDAECKLVVTADGGWRRGNEVKLKTAVDEALKETP
                     SVTACIVVKRTGTPQQMLEGRDFWWHDLMETVETDCPAEELDSEHPLYILYTSGTTGK
                     PKGILHTTAGYLLQAHLTTKWVFDLKDEDLYWCTADIGWVTGHSYVVYGPLSNGATVL
                     MYEGAPNFPEPDRFWTMIEKHRVNIFYTAPTAIRAFIKWGDQWPSKHDLSSLRLLGTV
                     GEPINPEAWMWYHRTIGKERCPIVDTWWQTETGAIMITPIPGATPTKPGSGTKPFPGI
                     DADIMSRDGQPVGANQGGYLVIKRPWPSMLR"
BASE COUNT          427 a          579 c          529 g          349 t
ORIGIN      
        1 cgtgcatgaa agtcaacgcc gatatatatt ttctgcacag cgcctccttt cagtctccat
       61 gtcaacagag ctgctcgtga gtctagcact cacgaacgga ggcgctgctt cataacatca
      121 gggttggcac aaccctggga aacaaacaat caaaggacgt ccaacgctga aagcgttggc
      181 aaaatcttcg gcaagcactc gccaacgctt tcagcgttgc ttgcaggcgt cgggattaat
      241 cccagggttg tgccaaccct gggctgaaac tcgctaacgc cttcggcgtt gttgccctcg
      301 tgcttcgcgt aaatccggaa cgccttcggc gttgctgctc tcgtgccctt cggtgttccg
      361 gttgtggcgt cgagcattct gtggtacaca ggcaggcaac gcaaggtaaa aacccaaagc
      421 aacaaagtaa gtgaggtgcc gtgtcgactg ttacgacaaa catcgaatcc gtgcttcagg
      481 aagaacgggt cttcccgccg ccgcctgagt tttccacgaa agcgcacatc aagtcagaag
      541 ccgagatcga gagcctgcgc gccgaagcgc acgccgaccc ggaagctttc tgggcacgca
      601 tggccgagga gcttcactgg ttcaagaagt gggacacggt gctcaaatgg gatccgccgc
      661 acgcggagtg gttcggcggc ggcaagctca acatcgctta caactgtctc gatcgtcacc
      721 tcgcgacctg gcggcgcaac aaagcagcgc tgatctggga aggcgaaccc ggcgaaacac
      781 gcacctacac gtatcaacaa ctccacaccg aagtctgcaa gttcgcgaat gtgctcaaac
      841 acgccggcat tcaacgcggc gatcgcgtgg cgttgtacat gccgctgatt cccgagctcg
      901 cgatctcgat gctcgcgtgc gcgcgcatcg gcgcgactca ctcggtcgtc ttcggcggct
      961 tctcgagttc ggcgttaatc gatcgaatca acgatgcgga gtgcaagctg gtcgtaaccg
     1021 cagacggcgg ctggcgccgt ggcaacgaag tgaaactcaa aaccgcggtc gacgaagcgt
     1081 tgaaagaaac gccttcagtc accgcgtgca tcgtcgtcaa acgcaccggc acgccgcagc
     1141 agatgctgga aggacgcgac ttctggtggc acgacctgat ggaaacggtc gaaaccgatt
     1201 gcccggcgga agagttggac agtgaacatc cgctctacat cctctacacc tccggcacta
     1261 ccggtaaacc aaaaggcatt ctgcacacga ccgcgggcta cctgctgcaa gcacatctca
     1321 cgaccaagtg ggtcttcgat ctcaaagacg aggaccttta ctggtgcact gccgacatcg
     1381 gttgggtcac cggtcacagt tacgtcgtct acggtccgct ttcaaacggc gctaccgtgc
     1441 tgatgtacga aggcgcgccg aacttccccg aacccgatcg cttctggacg atgatcgaaa
     1501 agcaccgggt gaacatcttc tacaccgctc ccactgcgat tcgtgcattc atcaagtggg
     1561 gcgaccagtg gccctcaaaa cacgaccttt cgagcctgcg cctgctcggc acggtcggcg
     1621 aaccgatcaa tcccgaggcg tggatgtggt accaccggac gatcggcaag gagcgctgcc
     1681 cgattgttga cacgtggtgg cagaccgaaa ccggggcgat tatgatcacg ccgattcccg
     1741 gcgcgactcc cacaaaaccc ggctcaggca cgaaaccttt tcccggcatt gacgccgaca
     1801 tcatgagccg cgacggtcaa ccagtcggcg cgaaccaggg cggctacctc gtaatcaagc
     1861 ggccgtggcc gtcgatgctg cgaa
//
LOCUS       DASWTX010000461         4714 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_289686, whole genome shotgun sequence.
ACCESSION   DASWTX010000461 DASWTX010000000
VERSION     DASWTX010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4714)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4714)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4714
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289686"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            107..1996
                     /locus_tag="VGD38_07075"
     CDS             107..1996
                     /locus_tag="VGD38_07075"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HEY0727811.1"
                     /translation="MQEKEFVALVNKLELYERDHPAAYRLRVGLLAALGYLVLFGALA
                     LALLFIAGIIYLGKLNLTIIGALVLVVSLMFVILRALWIVFPEPEGHELKYEDAPRLF
                     ELVEETRKATNGPPVYKLLLTNEYNASIVQHPRLGMLGWHQNYLHIGLPLLRALSPND
                     IRAIVAHEFGHLSGSHGKFTSWIYRVRQTWMQMVETAHQHRADGLGIFVRFSNWYAPY
                     FEAYSFVLARAQEYEADRCAMTVSGKEKTACALINMKLKGKLLIEDFWPAVYGRADTE
                     AEPPHETFTEMLQSLRNPIAPEKAQVWFSETLTVRHRYDDTHPALADRLASIGYAEVR
                     KSADLNSFVMADEQPRADEYLLARLPEEFIQQQNNLWKEENAAHWSERHKFVAEAQQV
                     LASFEEKAQAAELTAEERWERAHYAAGKDGVVAAMPLMREVLALNPDHAAANYMLGEA
                     LLAQGDEAGIKHIEAAIETDPHGIPAGCETIVAFLTKHHRVEEAEKYGECIIGYYDEL
                     AWARREREMITKSDAFAPHGLEGEALEPLREQLANVPLLQSALLVKKLCKHFPQDTCY
                     VLGVTSKRFLGLQIDNRDNKLVNELATGLNYPHYIYIIALEHTYKPLRKIFKRIEGAE
                     IYRAS"
     gene            complement(2008..2664)
                     /locus_tag="VGD38_07080"
     CDS             complement(2008..2664)
                     /locus_tag="VGD38_07080"
                     /inference="COORDINATES: protein motif:HMM:NF018712.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1326 domain-containing protein"
                     /protein_id="HEY0727812.1"
                     /translation="MRRVLFAASVMIVAICALVFSSQAENVSLRGDYVEVRTASVFAG
                     ACHYNGEVVTTGRDAMMAWNVTSGNWQGVDLTGVRAMAIVTADANLSDAQAARQSEVI
                     IDVQASDAQSKAMIAALKSKYAAALGDIVKVRSAAIAFNRNGRTYAVKADDATIDVEA
                     MPNDLCCKMPNLVWYSPFVGLENRKVGYTVRARYSGKAIGTPWSRSGENSAFYGSFSL
                     "
     gene            complement(2697..2969)
                     /locus_tag="VGD38_07085"
     CDS             complement(2697..2969)
                     /locus_tag="VGD38_07085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727813.1"
                     /translation="MSDKSTEPIATLAETVAAAAPVQSPYCGSLRSKKFFLLDRLAAS
                     ADDYLDAANHVWCCETQEVIGPDNGRVDPDRCGPGRACYSSAVKGL"
     gene            complement(2962..3966)
                     /locus_tag="VGD38_07090"
     CDS             complement(2962..3966)
                     /locus_tag="VGD38_07090"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HEY0727814.1"
                     /translation="MKSFEWTNPTTINEAVKLLSVSGGDIDEAPRPIAGGQDLLTTMK
                     DYTSRPARLVNLKQIRGLDRITLNARGLTIGALVTLSDLEEHAGVRKSFPGLSEAAHS
                     IATPQIRNLGTVGGNLCQRPRCWYFRLEDVNCLKKGGSECYAAAGENKYNAIIGGGPS
                     YIVHPSDLAPMLLALGARVTVAGAAGRRVIPLDKFFTLPSEGNIRRENVLENDDIITE
                     VFVPASALAARSTYLKFKERESLDFALASVAAAVQLGSNRTVRDVRMVLGGVAPIPWR
                     VPAAEKFLAGKELKPDVLAEAAKIALADAKPLEKNEYKVPLTQTLVRRALAKAGGNNV
                     "
     gene            complement(3963..>4714)
                     /locus_tag="VGD38_07095"
     CDS             complement(3963..>4714)
                     /locus_tag="VGD38_07095"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY0727815.1"
                     /translation="EEFGLGMNDVKEQIGSSKLGSANPSGGSTTAASLAPSVKDAAIK
                     ARMMFVERVAPLLGNAKPEEIVFAGGKVSAKGQSLTWKQACAALPAAGVTSHGEWRAD
                     LQSRGIHGVCFAEVEVDVETGHIKPIKMVHIQDGGLPLNRLTLESQINGGMIQSLGQA
                     LYEGRVMDAQLGMQLNPGFGDYTLPGCLEMPELVPIIDDDDKREAVIGIAEGCIIPAL
                     GAIANAVFNATGLRIRELPITPDKILMGTKA"
BASE COUNT          978 a         1378 c         1388 g          970 t
ORIGIN      
        1 gacggggata aaaacaaaaa agaaaacaag cagattgtga tgtaatgcat ggcggtggct
       61 tatagcactt cggatttgcg actggcaaga aggttctttc tgaaacatgc aggaaaaaga
      121 gttcgtcgcg ctggttaaca aactggaact ttacgaacgc gatcaccccg cggcgtaccg
      181 tctccgcgtc ggtttactcg ccgcgctcgg gtatctcgtt ctgtttggcg cgcttgcttt
      241 ggcgctgctt tttatcgccg gcatcatcta cctgggcaag ctcaatttaa cgatcatcgg
      301 ggcgctggta cttgtggtca gcctcatgtt cgtgatcctg cgcgcgttgt ggattgtgtt
      361 tcccgaaccc gagggtcacg agttgaagta cgaggacgcg ccacggctgt ttgagctggt
      421 ggaagaaaca cggaaagcca ctaatggccc accggtttac aaactgctgc tcacgaacga
      481 atacaacgcc agcatcgtgc aacacccgcg gctcggaatg ttgggctggc accagaacta
      541 cctgcacatc ggtttgccgt tgttgcgcgc gctttcgccc aacgacatcc gcgccatcgt
      601 cgcgcacgag tttggccatc tgtcggggag ccacgggaag tttacgagct ggatctatcg
      661 cgtgcggcaa acgtggatgc agatggtgga aacagcgcac cagcaccgcg ccgacggttt
      721 gggcatcttc gtgcgcttct cgaattggta cgcgccgtat ttcgaggctt actcattcgt
      781 actggcgcgg gcacaggaat acgaagcgga tcgttgcgcg atgactgtgt cgggtaagga
      841 gaagacggcg tgcgcgctga tcaacatgaa gttgaaaggc aagctcttga tcgaagattt
      901 ctggcccgcg gtttacgggc gggcggacac ggaagccgaa ccgccgcacg agactttcac
      961 ggagatgctt cagtcgttgc gcaatccgat cgcgccggag aaagcgcagg tttggttttc
     1021 agaaacgttg acagtgcgcc atcgctacga cgatacgcac ccggcgctcg ccgatcgact
     1081 ggcgtcgatc ggttatgcgg aggttcgtaa gagtgccgac ttgaattcgt ttgtgatggc
     1141 tgacgagcag ccgcgcgcgg atgagtatct gctcgcgcgt ttgcctgaag agtttatcca
     1201 gcagcaaaac aacttatgga aagaagagaa cgcggcgcac tggagtgagc ggcacaagtt
     1261 tgtggctgaa gcgcagcagg tgttggcaag ttttgaagag aaggcgcagg ctgcggagtt
     1321 gactgcggaa gaacgttggg aacgcgcgca ctacgcggcc ggcaaggatg gcgtcgttgc
     1381 ggcgatgccg ttgatgcggg aagtgctggc gttgaatccg gaccatgcgg ccgcgaacta
     1441 catgctcggt gaagcgttgc tcgcgcaggg cgacgaggcc ggcatcaaac acatcgaagc
     1501 ggcgatcgag acagatccgc atggcattcc cgcagggtgc gaaacgatcg ttgctttctt
     1561 gacgaagcac caccgggtgg aagaagccga gaagtatggt gaatgcatta tcggttatta
     1621 cgacgagctt gcgtgggcgc ggcgcgagcg cgagatgatc acgaagagtg atgcgtttgc
     1681 gcctcacgga ctggagggtg aagcgctgga accgttgcgg gagcagcttg cgaatgtccc
     1741 gctgttgcag tctgcgcttc tggtgaagaa gctgtgcaaa cattttccgc aggacacgtg
     1801 ttacgtgctg ggtgtgacgt cgaaacgttt cctgggtcta cagatcgata atcgcgataa
     1861 caagctcgtg aacgaactgg caacgggcct gaactacccg cactacatct acatcatcgc
     1921 gctggaacac acgtataagc cgctacggaa aatcttcaaa cgaattgaag gtgcggagat
     1981 ctatcgcgcg tcgtaatcgc gagcggatca gagcgagaag ctgccgtaga aggcgctgtt
     2041 ctcaccggag cgcgaccacg gcgtgccgat ggctttgccg gagtagcggg cgcggacggt
     2101 gtagccgacc ttgcggtttt cgagtccgac gaatggtgag taccagacga ggtttggcat
     2161 cttgcagcag agatcgttag gcattgcttc gacgtcgatc gtggcgtcgt cggctttgac
     2221 ggcgtaagtg cggccgttgc ggttgaaggc gatcgccgct gaacgcacct taacaatgtc
     2281 gcccaacgct gcagcatact tggatttcag cgccgcgatc attgctttcg attgagcgtc
     2341 tgacgcttgg acgtcaatta tcacctctga ctggcgcgcg gcctgggcgt ccgaaaggtt
     2401 tgcgtccgct gtgacgatcg ccatcgcgcg tacgcctgta agatccacgc cctgccagtt
     2461 tccggaggta acgttccagg ccatcattgc atcgcgaccg gtcgtgacga cttcgccgtt
     2521 gtagtgacac gcgccggcga acacgcttgc cgtgcgcact tcaacatagt cgccgcgcag
     2581 gctgacgttc tcggcttgcg aactgaaaac tagtgcgcaa atcgctacga tcatcacgga
     2641 tgctgcaaac aagactcttc gcattactta cctccaaaaa ccacagatga cacggattat
     2701 aaccccttga ccgcggaact gtagcacgca cgtccgggtc cgcagcgatc cggatcgaca
     2761 cgcccgttgt cggggccgat cacttcctgc gtttcgcagc accagacgtg gtttgcggcg
     2821 tcgagataat cgtcggcgct cgcggcgagt cggtcgagca ggaagaattt tttcgaacgc
     2881 agcgagccgc agtaaggcga ctgaaccggc gcggccgcag caactgtctc ggcgagcgta
     2941 gcaattggtt cggttgattt gtcagacatt atttcctcct gccttcgcca acgcgcggcg
     3001 cacgagcgtt tgtgttagcg gcaccttgta ttcgttcttt tcaagtggct tagcgtcggc
     3061 gagcgcgatc tttgcggctt ccgcgagcac gtcgggtttc aattctttgc cagcgagaaa
     3121 cttctccgcc gccggcacac gccacggaat cggagccacg ccgccgagca ccatgcgcac
     3181 gtcgcgcacg gtgcggttcg atccgagttg cactgccgcc gcgacagacg cgagcgcaaa
     3241 atccagcgat tcgcgttctt tgaacttcaa gtacgtcgac cgcgccgcga gcgccgacgc
     3301 cggcacaaaa acctcggtga tgatgtcgtc attctccagc acgttctcgc gtcgaatatt
     3361 tccctccgac ggcaacgtga aaaacttgtc gagcggaatc acgcgccgcc ccgccgcacc
     3421 cgcaaccgtc acacgcgcac caagcgcgag caacatcggc gcgagatccg acggatgcac
     3481 gatgtacgat ggaccaccgc cgatgatcgc gttgtacttg ttctcgcccg ccgcggcgta
     3541 acactccgac ccgcccttct tcaaacagtt aacgtcctcg agccggaagt accagcaacg
     3601 cggccgctgg caaagattcc cgccaaccgt gccgagattg cgtatctgcg gcgtcgcgat
     3661 cgaatgcgcg gcttcactca agcccgggaa gcttttgcgc acacccgcat gctcttccaa
     3721 atcgcttaac gtgacgagcg cgccaatcgt gagcccacgc gcattgagcg tgatgcgatc
     3781 gagaccgcgt atctgcttga gattcacgag ccgcgccggc cgcgacgtgt agtccttcat
     3841 cgtggtcaac agatcctgac cgccggcaat cggccgcggc gcctcatcga tatcgccacc
     3901 ggaaacactc aacagcttca cggcttcatt aatcgtcgtt gggttggtcc attcaaacga
     3961 tttcatgctt ttgtccccat caaaattttg tccggagtga tcggcagttc gcggatgcgc
     4021 aaaccggtgg cattgaacac ggcgttcgca atcgcgccca acgcgggaat gatgcagccc
     4081 tcggcgatgc cgatcaccgc ctcgcgttta tcgtcgtcgt cgatgatcgg cacgagctcc
     4141 ggcatctcga gacagcccgg cagtgtgtaa tcgccaaatc ccggattgag ctgcatgccc
     4201 aactgcgcat ccatcacgcg cccttcatac aaagcctggc ccagcgactg aatcatgccg
     4261 ccgttgatct ggctttcgag cgtcagacga ttcaacggca acccgccgtc ctgaatgtgg
     4321 accatcttga tcggtttgat gtgaccggtc tccacgtcca cttcgacttc cgcaaaacac
     4381 acgccgtgaa taccgcgcga ctgcaaatca gcgcgccact cgccgtgcga cgtgacgccc
     4441 gcggccggaa gcgccgcaca cgcctgcttc cacgtgagcg actgaccttt cgcactgacc
     4501 ttgccgccgg caaaaacaat ttcttccggt ttggcattgc cgagcagcgg cgcgacacgc
     4561 tcgacgaaca tcatccgcgc tttgatcgcc gcgtctttca ccgacggcgc gagcgatgca
     4621 gccgtcgtcg atccgccgga cggatttgcc gaacccagtt tcgagcttcc gatctgctcc
     4681 ttcacgtcgt tcatgccgag accaaactct tcgg
//
LOCUS       DASWTX010000462         3871 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_376506, whole genome shotgun sequence.
ACCESSION   DASWTX010000462 DASWTX010000000
VERSION     DASWTX010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3871)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3871)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3871
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_376506"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            242..2302
                     /locus_tag="VGD38_07100"
     CDS             242..2302
                     /locus_tag="VGD38_07100"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEY0727816.1"
                     /translation="MKRAAFVLICSFALMWVSAGPSLGQVPLPVLLRITQAEDERRWD
                     DELRALLSHRDAAIRKRAALAAGRIGNEDSVAALSNLLKDADPGVRAMAAFALGEVES
                     ISAADVLIAIVKNNDERSELRARAIEALGKIAAALPQEQQARQRELGAVIREALEVDS
                     TRSADQLTVLLGITAALRSRPVDAGPTLAKFLSSPDGRVRSDAANALARLRLKDGNDQ
                     LRKLLTTDPDPNVRANAARVLGATEDKASFSEVLARVTGDSDSRVRVSAIRALVGLKD
                     PGAAESLLKRTPPDNNELLETATTLGRLLAQTEDQTAIAWLRKVNETFKHSAPEVEIA
                     FVRIAPAKYLSEIENEKNWSNWRATAAIANALAEYATLPDTLNTKAELAAAAEARLRK
                     MLDYRNAGYAISDVLRALAAFKPKDLQPVLIAHLSKSDVIVRATAADLLGDVQPSDEI
                     TRALIAAWPQAARDVLNDAALSILDSLSKQKNGILQSSDVVTGPFKDAVGSRDHLVRR
                     RAVALMKASGKGDFSIHIGYVQTRNTQADYRRALARIGRKVQAVVTTTKGSFTIDLLP
                     SDAPLTVDNFVQLAQRNYYRGITIHRVVPNFVIQDGDPRGDGNGGPGYQIRCEMNEVP
                     YDRATLGMALSGKDTGGSQWFVTHAPQPHLDGGYTVFGRVVAGMEVVDKIERGDVVKS
                     ITIR"
     gene            2310..>3871
                     /locus_tag="VGD38_07105"
     CDS             2310..>3871
                     /locus_tag="VGD38_07105"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HEY0727817.1"
                     /translation="MNKTQTTIFAFCFLCIFCGLAAAQTREVAPAERHRYQIDIKIDF
                     EHLSYTGTETVRWINQGEKPSSVIYFHLYSNLRVPEQPVGAEFDEPRIEILEVRAASD
                     AAALPSALEDQGTTLRVNLREPVAPGSEAEVVLKFKGRVPEIDRDETSLTTHVVKQVS
                     AALRSDREIRRARDINFLCRGVMLLGTAYPALVVHDGDEWRRKIEPSVGDFVFNEAAD
                     YEVSVTAASGIEVFTSGMETGPRSEKRMFTATAIRDFAILAGPGLRSEHTEVNGTDVR
                     SIYFADHERVGKRALVVAANALRTFTNLFGPLPFKQVSIAEAPLVAGLGSCEFSGLNV
                     IASAFFVDFDSPAVRNLPEIIREQRPSVEESLEWTVAHLVAHQWWGAAVGNDPAREPI
                     LDEALSCWSSLLYYQQMYGPERATAVLDDQVKGVYRMYRTFGGDDMDANRPSREYRNT
                     FQYAAIVTAKGALMFVDLQRTLGDEKVIAALRKYYQANLHEIAQIEDLRIALVAEAPV
                     EQRRMIGRTFTR"
BASE COUNT          852 a         1138 c         1123 g          758 t
ORIGIN      
        1 cgaaggaagc tgcaaaatgc ttcagatgca caccgccgcc gagaaggcga accgagagaa
       61 gaaggcgagc gagcctctcg acaccacgaa gatgcctccg gtccgtgccg aagctccagc
      121 caagccggcc agcattccga acgtttcaaa cgtcgtcagc taagcacttt ccacattgac
      181 tatccacaga ttacacagat ttaatctgtg tgatctgtgg attcttgttt ttaggggcga
      241 aatgaaaaga gcagctttcg ttctgatttg cagctttgcg ctgatgtggg tttccgccgg
      301 gccgagtctg ggccaggttc cccttccggt tctcctccgc attacacaag ccgaagacga
      361 gcggcgctgg gatgatgagt tgcgcgcgct gctctcgcac cgcgatgcgg cgattcgcaa
      421 gcgagcggca ctcgcggcgg gaagaatcgg caatgaagat tcggtcgctg cgctttcgaa
      481 tctgctgaag gacgccgatc cgggtgtgcg ggcgatggcg gcttttgcgc tcggcgaagt
      541 cgaatcgatc tcggcagcgg acgttttgat cgccatcgtc aagaacaacg acgaacgcag
      601 cgagctgcgc gcacgtgcga tcgaagcact cggaaagatc gcggcagctt tgccgcagga
      661 acagcaagca cgtcaacgcg agctcggcgc ggtcattcgt gaagcgctcg aagtcgactc
      721 aacacgttcg gcagatcaac tgactgtact actcggcata accgcagcct tgcgctcacg
      781 accggtagac gcgggcccaa cgctcgctaa atttcttagt tcgcctgacg ggcgtgtccg
      841 atccgatgct gcaaacgctc ttgcgcggct ccgcctgaaa gacggcaacg accaactgcg
      901 aaaactattg actacagatc ccgatccaaa cgtccgagct aatgccgcac gcgtactcgg
      961 cgccaccgaa gacaaagcct cgttttccga ggttctggct cgcgtcaccg gcgactccga
     1021 ctcacgcgtc agagtcagcg ccatcagggc tttagtggga ctcaaagatc cgggcgctgc
     1081 cgagtccctg ctcaaacgca ctccgcccga caataacgag ctactcgaga ccgccacgac
     1141 actcggccgg ctgctcgcgc agacagaaga tcagacggca atcgcctggc tgcgaaaggt
     1201 aaacgaaacg ttcaagcatt ccgcgcctga ggttgaaatc gccttcgttc gcatcgcacc
     1261 cgcgaagtac ctttccgaaa tcgaaaacga gaagaattgg agtaactggc gtgcgaccgc
     1321 tgcgatcgcg aatgcgctcg ctgaatacgc aacgttgccc gacacgctaa acacaaaggc
     1381 tgaactggct gcggcggcgg aagcccgact gcgcaaaatg ctcgactacc ggaacgccgg
     1441 ttacgctatc tcggacgttc tgcgcgcact tgcggcgttc aaaccaaagg atctccagcc
     1501 ggttcttatc gcgcacctaa gcaaatccga cgtgatagtt cgtgccaccg ccgcagacct
     1561 gttaggggat gtgcagccct cagacgaaat cacaagggca cttatcgcag cctggccgca
     1621 agccgctcgc gacgtcctga atgatgcagc gctgtcaatc ctcgattcac taagcaagca
     1681 aaagaacggc atcctacaaa gcagtgatgt cgtaacgggc cctttcaaag acgcagtagg
     1741 ctcgcgcgat cacctcgtgc gtcgtcgcgc cgtcgctctc atgaaagcaa gcggcaaagg
     1801 cgacttctcg atacatattg gatacgtgca aacgagaaac acgcaggccg attaccgccg
     1861 cgcgctcgcg cgtatcggaa gaaaagtcca ggccgtcgtg actaccacca aaggttcgtt
     1921 tactattgac ctgctcccca gcgacgcccc actgactgta gataacttcg ttcagcttgc
     1981 ccaacgaaac tattatcgtg gcatcaccat ccatcgcgtc gtgccgaact tcgtgattca
     2041 ggacggtgac ccgcgcggcg acggcaacgg cggacccggg tatcagatcc gctgcgagat
     2101 gaacgaggtg ccttacgatc gcgccaccct gggcatggcg ctttccggca aggacacggg
     2161 cggctcgcaa tggttcgtga ctcacgcgcc gcagccgcat ctcgacggtg gttacacggt
     2221 tttcggacgc gtagttgcag gcatggaagt ggtcgacaaa atcgagcgcg gcgacgtggt
     2281 gaagtcgatc acgattcgtt aggagacggg tgaataagac acaaacaaca atttttgcgt
     2341 tctgcttttt gtgcatcttt tgcggcctcg cggcggcgca aaccagagaa gtagcgccgg
     2401 ccgagcggca ccgttaccag atcgatatca agatcgactt cgaacatctc tcctacacag
     2461 gcacggaaac cgttcgctgg atcaaccagg gcgagaagcc gtcctctgtc atctacttcc
     2521 acctttattc aaacctgcgc gttcctgaac agccggttgg cgctgaattc gatgagcctc
     2581 gcattgagat tctcgaagta cgtgctgcca gcgatgccgc tgcgctccct tctgcgctcg
     2641 aagatcaggg aacgacttta agagtaaatc tgcgtgagcc ggtcgcaccc ggcagcgagg
     2701 ctgaagtcgt gctcaagttc aaaggccgtg ttcccgagat cgatcgcgat gaaacgagtt
     2761 tgacgaccca cgtggtgaag caggtcagtg ctgcgttgcg cagcgatcga gaaatccggc
     2821 gcgcgcgtga tatcaatttc ctctgccgcg gcgtgatgct gctcggcact gcatatccag
     2881 cactcgtggt tcacgatggt gatgagtgga gacgcaaaat cgagccgtcg gtcggcgatt
     2941 tcgtcttcaa cgaagcggcg gattacgaag tgtcggtcac cgccgcatcc ggtattgaag
     3001 tcttcacttc aggcatggaa accggcccgc gttcggaaaa gagaatgttc accgcgactg
     3061 cgatacgcga ctttgccatt ctcgccggtc cgggactccg cagtgaacac accgaagtga
     3121 acggaacgga tgtgcgatcg atctactttg cggatcacga gcgtgtcggc aaacgcgcgc
     3181 tcgtcgttgc ggccaatgcg ctgcgaacgt tcacgaacct gtttgggccg ttgccgttca
     3241 agcaggtcag catcgctgag gcgccgctgg ttgcgggtct cggtagttgt gagttttcgg
     3301 gtttgaacgt catcgcgagc gcgttcttcg tcgacttcga ctcgccggcg gtgcgcaatc
     3361 tgccggagat cattcgcgaa caacgaccgt ccgttgaaga gagtctcgag tggactgtgg
     3421 cacatctcgt cgcgcatcaa tggtggggcg ccgctgtcgg aaacgatccg gcgcgcgagc
     3481 cgattctcga cgaagcgctg tcgtgctggt cgtcgctgct ttattaccag cagatgtacg
     3541 ggcccgaaag agccactgcg gtgctggacg atcaggtaaa gggcgtctat cgcatgtacc
     3601 gaactttcgg cggcgacgac atggacgcca accggccctc gcgcgagtat cgcaacacgt
     3661 ttcagtatgc cgcgatagtg accgcgaagg gcgcgctgat gtttgtagat ctccagcgca
     3721 cgcttggtga cgaaaaggtg atcgcggcgt tgcgcaagta ttaccaggcc aatcttcacg
     3781 agatcgccca gatcgaagac ctgcgcatcg cgctcgtcgc cgaggcgccg gtcgaacaaa
     3841 ggcggatgat cggacgtaca tttacccgct g
//
LOCUS       DASWTX010000463         2452 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_333371, whole genome shotgun sequence.
ACCESSION   DASWTX010000463 DASWTX010000000
VERSION     DASWTX010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2452)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2452
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333371"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..387)
                     /locus_tag="VGD38_07110"
     CDS             complement(<1..387)
                     /locus_tag="VGD38_07110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727818.1"
                     /translation="MFRSLLLLAACLCTSVAAVAQQSTSQPLLIGRVAINQTHIAFTY
                     AGKIWLVERSGGVAKRLTNTPNEETSPVFSPDGKRIAFSRSNGNDWDVFIAAADGSGE
                     PTRVTMMPEDDFVTTWSPDGREVIFET"
     gene            537..1361
                     /locus_tag="VGD38_07115"
     CDS             537..1361
                     /locus_tag="VGD38_07115"
                     /inference="COORDINATES: protein motif:HMM:NF014414.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY0727819.1"
                     /translation="MEASQMTSEMDALKTKLRATWIAGDFGEIAKSYATGAEDFINGL
                     NLQPGQRVLDVACGTGNLALPAARLGAVVTGVDIAPNLIEQARENAKREGLTVQFDEG
                     DAEKLPYADASFDAVVTMFGAMFAPRPELTAAEMKRVCRPGGSVAMANWTPAGFIGQM
                     FKITASHVAPPANMPSPLLWGSEEAVRERFSEGTSDLQTSREAVHFNFPFGPAQVVEH
                     FRVYYGPTNKAFGALDENGQKALRTALEEHWTAHNIATDGTTVVRSEYLKVLAVRS"
     gene            complement(1367..2095)
                     /locus_tag="VGD38_07120"
     CDS             complement(1367..2095)
                     /locus_tag="VGD38_07120"
                     /inference="COORDINATES: protein motif:HMM:NF015438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HEY0727820.1"
                     /translation="MIIHVGYVHELVRYPVKSMAGVPTQSAFLGWHGFQGDRRFGFRR
                     LNDNSGFPWLTASRLPELILYQPLGFDEAAEEPTHVRTPEGMDLELRSMELQNNITEK
                     FGSPVELMKLKHGIFDDASVSVINLATIAGIGREVGEDLDPRRFRPNIIIASETTESF
                     VEDGWIGGRLVFGGEGGPEINMAMRDLRCVMINLDPETAQQDPRVMKAAVRLNGNNAG
                     AYGMVARTGQISVGQAVNLITELR"
     gene            2213..>2452
                     /locus_tag="VGD38_07125"
     CDS             2213..>2452
                     /locus_tag="VGD38_07125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727821.1"
                     /translation="MILVAPVLALALVFTRHARAGLWLLFWSMLGSLIFGFLHHYIII
                     SPDHVSHLPPGAAQGIFRLTAVLLIVTEALGVLVAV"
BASE COUNT          514 a          672 c          710 g          556 t
ORIGIN      
        1 cgtttcaaag atgacttccc ttccatccgg cgaccacgta gtcacgaaat cgtcttccgg
       61 catcatcgtt acgcgcgttg gctcgccgga accgtctgcc gcggcgataa agacatccca
      121 gtcgttgcca ttcgagcgcg agaacgcgat gcgcttgccg tcgggcgaga agacgggact
      181 ggtttcttcg ttgggcgtgt tggttaaacg tttcgcgacg ccgccgcttc gttccaccag
      241 ccaaatcttt ccggcataag tgaacgcgat gtgcgtttgg ttgatggcga cgcggccgat
      301 caggagtggt tgactggtgc tctgttgggc gacagcggca acagatgtgc ataaacaagc
      361 ggccagcagg agtaggctgc ggaacatagg cttgtacctc gggtggaaaa gtggcgctgg
      421 ttctaaccgt tagccagtac gagcctattg aacaatgggt tcatttattc gtccagacct
      481 aaacgcatct caattgcgcg ttatcttctg gagttgaaga tcaaaaggag caaacaatgg
      541 aagcaagcca aatgacgtcc gagatggacg ccttgaagac aaaactgcgc gcgacgtgga
      601 tcgccggcga ctttggtgag attgcgaagt cgtacgcgac cggtgccgag gattttatta
      661 acggcctgaa tctgcagccg ggccagcgcg tgttggacgt tgcgtgtggc accggaaatc
      721 tcgcgctgcc ggccgcgcgt ctgggtgcag ttgtcaccgg cgtcgacatc gcgccgaacc
      781 tgatcgagca ggcacgcgag aacgcgaagc gcgaagggtt gacggtgcag tttgacgaag
      841 gcgacgcgga gaagttgccg tacgcggatg cgagttttga tgccgtggtg acgatgttcg
      901 gagcgatgtt tgctccgcgt cctgaactga ctgctgcgga gatgaaacgc gtgtgccgtc
      961 cgggcggatc ggtcgcgatg gccaactgga cgccggctgg ctttatcgga cagatgttca
     1021 agatcacggc gtcgcatgtt gcgccgccgg ctaacatgcc ttcaccgctt ttgtggggat
     1081 ctgaagaagc tgtgcgcgag cgtttcagcg aaggaactag tgatttgcag accagccggg
     1141 aggcagtgca tttcaacttc ccgtttggac cagcgcaagt ggtcgagcat ttccgcgtgt
     1201 actatggtcc aaccaacaaa gccttcggcg cactcgacga aaacggacag aaggcgttgc
     1261 gtacggcgct cgaggagcat tggaccgcgc acaatatcgc gactgacggt acgactgtgg
     1321 tgcgttccga gtatttgaag gtacttgcgg tgcgtagttg atcaggctaa cgtagttccg
     1381 ttattagatt gacggcttga cccacgctga tctggcccgt gcgtgcgacc attccataag
     1441 caccggcatt attgccgttc aaacgcacgg cggctttcat cacgcgtggg tcttgctgtg
     1501 ccgtttccgg atcgaggttg atcatcacgc agcgcagatc gcgcatcgcc atattgattt
     1561 ctggcccgcc ttcgccgccg aaaaccaacc ggccgccgat ccagccatcc tccacaaacg
     1621 attcggtcgt ttccgaagcg atgatgatgt ttggccggaa tcgccgcggg tccaaatcct
     1681 cgcccacttc cctgccgata ccggcgatcg tcgctaagtt gatcactgaa acactcgcgt
     1741 cgtcaaaaat tccatgcttg agtttcatca gttcgaccgg actgccgaac ttttccgtga
     1801 tgttgttttg taactccatg ctacggagct caaggtccat accttccggc gtacggacat
     1861 gcgtcggttc ttcggcagcc tcatcaaacc cgagcggctg gtacaaaata agttcgggaa
     1921 gacggcttgc ggtaagccac ggaaagccac tattgtcgtt gagccggcga aaaccgaagc
     1981 gccggtctcc ttgaaagcca tgccagccga gaaaggcaga ctgagtcggg acaccggcca
     2041 tcgacttgac cggataccgc acgagttcat gaacatagcc aacgtgaata atcataggat
     2101 cttgataacg atagtcgtac tagctcactt agttgttaat ttacttcacg gcaacgcgca
     2161 tacgagctta ggcgttggtc taagcacttg gcaacaggtc tacgttatcg cagtgattct
     2221 agtagcgccc gtgctcgcgc tcgcactggt ttttacacga cacgctcgag ctggtctatg
     2281 gttgttattc tggtccatgc tcggttcttt aatcttcggc ttcctgcacc actacatcat
     2341 catctctccc gaccacgtct cccacctccc acccggcgcc gcgcagggca tatttcgtct
     2401 cacagcggtg ctgctgatag taactgaagc gttgggcgtg ctcgtggcag tg
//
LOCUS       DASWTX010000464         2512 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_417441, whole genome shotgun sequence.
ACCESSION   DASWTX010000464 DASWTX010000000
VERSION     DASWTX010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2512
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417441"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..969
                     /locus_tag="VGD38_07130"
     CDS             <1..969
                     /locus_tag="VGD38_07130"
                     /inference="COORDINATES: protein motif:HMM:NF014600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HEY0727822.1"
                     /translation="KAGETLPPGKSVGDVKLIPQHTQVQVKDIKIGPERHVYVFAVAN
                     NSGEQFGWTSAKNLLGGFYNETVGLSPTTWALEPLGNNMTCVDELAWIRDAAPTFASK
                     GTTIPIKSFVAVTEKSPDGVHVKVSKMTIAQNAVQLGEEIGWTKAANLKDGCADFYFS
                     SAWKDEKGPNGCWRQGAHIGQKLLVNIVGYGAQLEQITVDTLEPYLKLKDAAAEDNIQ
                     LAIASAFRTYAHQVILWNMFQAGTGHKAAEPGTSHHQHGQAFDLNTLENVFDGSDKIY
                     EWLKRNAPKHGFIRTVSKESWHWEYRPEKAAELAAQGKFKLSGVNP"
     gene            1039..1112
                     /locus_tag="VGD38_07135"
     tRNA            1039..1112
                     /locus_tag="VGD38_07135"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1071..1073,aa:Gln,seq:ctg)
     gene            complement(1081..1578)
                     /locus_tag="VGD38_07140"
     CDS             complement(1081..1578)
                     /locus_tag="VGD38_07140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727823.1"
                     /translation="MSIYKCTSAVVGLLLVCAAAYPQSRSDLRSKYGPPYEAYEVRPH
                     VLMTVTFDEDSQACEMVIEARHTKKGGGVNGNNLISQSVAEEILNEVAPPERTGKGGR
                     AITFSGGCTSVTSYEYENASIYRYEQCLSGGGKAILAISIQWKHRHCRNTEVALAGRQ
                     GLEPR"
     gene            complement(1699..>2512)
                     /locus_tag="VGD38_07145"
     CDS             complement(1699..>2512)
                     /locus_tag="VGD38_07145"
                     /inference="COORDINATES: protein motif:HMM:NF018269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="di-heme oxidoredictase family protein"
                     /protein_id="HEY0727824.1"
                     /translation="ECIADGTLLSIRDNQPLAMRGTAIEVDVAEAPDQTRVGRFGWKN
                     SVASLLSFSAGAYLLEMGITSPLFPREQTSLGRSVAFADTVADPEDTGGEEGRGEDVE
                     AFTRFMRSTKAPPRNSAMVLNDATDPGSLLFDSLNCSVCHVRTITTAAVGSVINGGTF
                     VVPAALGNKIIHPFSDFLLHDIGTGDGIVETNGELTRNKIRTAPLWGLRTRDKFMHDG
                     GASSPPTNSGDQSFTLNEAILRHAGQATASRTAYQALTPLQRSQLIRFLKSL"
BASE COUNT          542 a          694 c          731 g          545 t
ORIGIN      
        1 aaagccggtg aaactcttcc tccgggcaag agtgtcggag acgtcaaact cattccgcag
       61 cacacccagg tgcaggtgaa agacatcaag atcgggcccg aacggcatgt gtacgtgttc
      121 gcggtagcca acaattccgg agagcagttt ggttggacct ccgccaagaa tctgttgggc
      181 gggttttata acgagaccgt aggactctcg cctaccacct gggcgttgga acctctcggt
      241 aacaacatga cctgcgtgga cgagcttgcc tggatccgtg acgccgcgcc gacgttcgcg
      301 tccaaaggta caactattcc gatcaagtcg tttgtggcgg tcacggaaaa atcacctgac
      361 ggtgttcatg tcaaagtcag caagatgacg atcgcgcaaa acgcggtgca gcttggcgag
      421 gagatcggat ggaccaaggc cgcaaatctc aaggatggtt gtgccgactt ctacttctcc
      481 tcggcgtgga aagatgagaa agggccgaac ggttgctgga gacagggcgc ccacatcggg
      541 caaaaactgc tggtcaacat cgtcggctac ggcgcccagt tggaacagat cacagtcgac
      601 acgctcgagc cttacctcaa gctcaaagac gcggccgcgg aagacaacat ccagctcgca
      661 atcgccagcg cgtttcgcac ctatgcccac caggtcatct tgtggaatat gtttcaggca
      721 ggcacgggac acaaggcagc cgaacccgga acgtcgcacc accagcacgg gcaggccttt
      781 gatctgaaca cgttggagaa cgtgttcgac gggagcgata aaatttacga atggctgaag
      841 cgcaacgcgc ccaagcacgg tttcatccgc acggtgtcga aggagtcgtg gcactgggag
      901 tatcgtcctg aaaaggccgc ggagttggcg gcgcagggca agttcaagct ttccggcgtg
      961 aatccctaag cggcaattgt tggctagggc gtctggttga caacgctagt cttgatacgt
     1021 aaattcagag cctcgtgctg ggaggtcgtc caatggtagg actccagact ctggatctgg
     1081 ctatcggggt tcgagtccct gcctcccagc caaagcaacc tcggtgttgc gacaatgcct
     1141 gtgcttccat tgaatgctga ttgctaaaat cgctttcccg ccgcctgata aacattgttc
     1201 atagcgatag atcgatgcgt tctcatactc ataggatgta acggatgtgc atcctcctga
     1261 gaatgtaata gcccttccgc cctttcctgt tcgttccggt ggcgccacct cgttcagaat
     1321 ttcctcggct acagactgag agatgaggtt gttgccgttc acgccgccgc ccttttttgt
     1381 gtggcgcgcc tcgataacca tctcgcacgc ttgactgtct tcgtcgaatg taacggtcat
     1441 cagtacgtgc ggacgcactt cataagcctc atatggtgga ccatacttgc tccgtaaatc
     1501 actgcgtgac tgcggataag ctgccgcgca aaccaacagc aggccgacga cggcactcgt
     1561 gcatttgtag atagacatga tttcctgttc cggttacgag ctgaggtaag tgagcgggga
     1621 gacctgaagt ttatattgag cgagtcgatt tggaaatggc tcagggcggc ccaaaggatg
     1681 agccgccctt ttagaggctc acagcgattt cagaaacctg atcaactgcg atctttgtaa
     1741 cggcgttaac gcctggtaag cggtgcggct tgcggtggct tggccggcgt gacgcaggat
     1801 ggcttcgttg agtgtgaagg attgatcgcc gctgttggtg ggtggactgg aagcgccgcc
     1861 gtcgtgcata aacttatcgc gcgtcctcaa tccccacaaa ggtgcggtgc ggatcttgtt
     1921 tctggttagc tctccgttgg tctcgacgat cccatcgccc gtgccgatgt cgtgcaacag
     1981 gaagtcgctg aacggatgaa tgatcttgtt gccgagcgcg gcgggcacga cgaacgttcc
     2041 accgttgatc accgatccga cagccgccgt cgttatcgtg cggacgtgac agaccgagca
     2101 gttgagcgag tcgaagagaa gcgaacccgg atcggtcgcg tcgttcagga ccatcgcgct
     2161 gttgcgaggc ggtgctttgg tcgaacgcat gaaacgcgtg aacgcctcca cgtcttcacc
     2221 gcgcccttcc tcgcctccgg tgtcttcagg atcggccacc gtgtcggcga acgcgacgct
     2281 tcttcccaac gacgtttgct ctctcgggaa gagtggactc gtgatgccca tctccaataa
     2341 gtaagcgccg gcagagaaac tgagcagact ggcgaccgag ttcttccaac caaagcgccc
     2401 aacgcgcgtt tgatccggcg cttcggccac atctacttct atagcggtac ctcgcattgc
     2461 gagtggctga ttgtcgcgta tggagagcag cgttccgtcg gcgatgcact cg
//
LOCUS       DASWTX010000465         2091 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_355401, whole genome shotgun sequence.
ACCESSION   DASWTX010000465 DASWTX010000000
VERSION     DASWTX010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2091
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355401"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1154)
                     /locus_tag="VGD38_07150"
     CDS             complement(<1..1154)
                     /locus_tag="VGD38_07150"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY0727825.1"
                     /translation="MKDDLLRLAGIEDAAGFYRDRFYTGGVLEASYFDAIDRFDMKFA
                     RTMWIYDNVRRGGALLDLGCGEGLLALLKRKDVYLAGIDLSPELVDMATRNGYDDARV
                     GQLTELPFEDASFDYVVSLDVFGHVDFADKDALLAEIKRVLRPDGVTMHGIELLDPKL
                     HPDYGTASVEKLAEFIAVDGHIGLESDEDIARRFSKFFSSVQTEPRYTLCLTAGEFIK
                     QYDSYGAPFARDFIDYLRGLSFDQQHAFDMAMGYVFQKISDLHLKLPSSGLYLLVKAS
                     NAAPEPFYDAHRDRSDLFSTTTEVPADLDRNSRAVFGNGWYGANHLPPIARWMTDRSW
                     LRFNADRFSKLRLQLTTHIPDLRTSPTELEFKLNGTPICGLCLFDYGWLEL"
     gene            complement(1151..>2091)
                     /locus_tag="VGD38_07155"
     CDS             complement(1151..>2091)
                     /locus_tag="VGD38_07155"
                     /inference="COORDINATES: protein motif:HMM:NF025877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Wzt carbohydrate-binding domain-containing
                     protein"
                     /protein_id="HEY0727826.1"
                     /translation="LSKAETERLLPEIASFAEIGAFIHQPLKTYSSGMYIRLAFATAI
                     AVSPQILIIDEALSVGDAVFQHRCTRRIKAMQEAGTTILFVSHDPGAIRALCSRAILL
                     TGGRMEADGTPADVLDRYQKVIMAAEAAYAEAQLGTEKTTDSSVPDETEVTPQFTYRH
                     GNGSAEILRVDLLDASRRPIAMVETGQQVHVRVRVGFHEDIEDPVYGFVIRNRHGINL
                     YGTNTKVQGIRPGLVKRGERVETTFSFNCWLAPDLYSISIAVHSPNSVSFDWMDGVLF
                     FRVFSEIAIEGVANLNAHATTKTIGAEVTATVSQTT"
BASE COUNT          469 a          648 c          553 g          421 t
ORIGIN      
        1 agttccagcc agccataatc aaataaacac aagccacata tcggtgtgcc gttgagtttg
       61 aattcaagct ccgtcggcga cgtgcgtaga tcggggatgt gcgttgtgag ttgaaggcgg
      121 agttttgaaa atcgatcggc gttgaaacgc aaccacgaac gatcagtcat ccaacgcgcg
      181 atgggcggca ggtggttcgc cccgtaccag ccattgccga agacggcgcg cgagtttcga
      241 tcgagatctg cgggaacttc cgttgtagtc gagaagagat cgctgcgatc gcgatgcgcg
      301 tcgtagaacg gctcgggcgc ggcgtttgag gctttgacca gcaggtacag accgctcgac
      361 ggaagtttca gatgcaggtc ggagatcttt tgaaagacgt agcccatcgc catgtcgaat
      421 gcgtgctgct ggtcgaacga aagaccgcgc aggtaatcga tgaagtcgcg agcgaaaggc
      481 gcgccgtagc tgtcgtattg cttgatgaac tcaccggccg tcagacagag cgtgtaacgc
      541 ggttcggtct gtactgaaga gaaaaactta ctgaatcgcc gcgcgatgtc ttcgtctgat
      601 tcgaggccga tgtggccgtc cacggcgatg aactccgcta gcttttccac gctcgccgtg
      661 ccgtaatccg ggtgcagctt cggatccagc aactcgatgc cgtgcatcgt cacgccatcg
      721 ggacgcaaca cgcgtttgat ctccgccaac agcgcatctt tgtcagcgaa gtcgacgtga
      781 ccaaacacgt cgagactgac gacgtaatca aacgaggcat cttcaaacgg caattcggtc
      841 agttggccca cacgcgcgtc gtcataacca ttgcgcgttg ccatgtcgac cagctccggc
      901 gagagatcga tcccggcgag ataaacgtct ttacgtttta gcaacgcgag caatccctcg
      961 ccgcaaccga gatcgagcag cgcgcctcca cgccggacgt tgtcgtagat ccacatcgtc
     1021 cgcgcgaact tcatgtcgaa acgatcgatc gcgtcgaagt agctcgcttc caacacgccg
     1081 ccggtgtaaa aacggtcgcg ataaaacccc gcggcgtcct cgatccccgc gagccttaac
     1141 agatcgtcct tcatgtcgtt tgggaaaccg ttgcggtgac ttcggcgccg atagttttcg
     1201 tcgtggcgtg tgcattcagg ttcgccacgc cttctatcgc gatctcgctg aacacgcgga
     1261 agaacagcac gccgtccatc caatcaaaac tcaccgaatt cggactgtgc accgcgatcg
     1321 aaatcgaata caggtcgggc gcgagccagc agttgaacga aaacgtcgtc tccacacgtt
     1381 cgccgcgctt caccagcccg ggtctgatcc cctggacctt cgtgttcgtg ccgtagagat
     1441 tgatcccgtg acgattacga atcacaaaac cgtaaaccgg gtcttctata tcttcatgaa
     1501 acccgacacg cacgcgcacg tgaacttgct ggcccgtttc caccatcgcg atcggccgtc
     1561 gcgaagcgtc caatagatcc acgcgcaaga tctcagcgct gccgttgccg tgtcgataag
     1621 taaactgcgg cgtgacttcc gtctcatctg gcactgaaga atccgtcgtc ttctccgtcc
     1681 caagctgcgc ttccgcatac gccgcttccg ccgccatgat cactttctga taacgatcca
     1741 gcacgtccgc cggcgttcca tccgcttcca tgcgcccgcc agtcaacaaa atcgcgcgcg
     1801 aacacaacgc ccgaatcgca cccggatcgt gcgacacaaa caagattgtc gtcccggctt
     1861 cctgcatcgc cttgatccgg cgcgtgcaac gatgctgaaa caccgcatcg ccaaccgaca
     1921 acgcctcgtc aatgatcagt atctgcggcg acaccgcaat cgccgtcgca aacgcgagcc
     1981 ggatgtacat gccgctcgaa tacgtcttca acggctgatg aataaacgcg ccaatctccg
     2041 caaaactcgc gatctccggc aacaaacgtt cggtctccgc tttcgacaac c
//
LOCUS       DASWTX010000466         1577 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_5336, whole genome shotgun sequence.
ACCESSION   DASWTX010000466 DASWTX010000000
VERSION     DASWTX010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1577
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5336"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(166..891)
                     /locus_tag="VGD38_07160"
     CDS             complement(166..891)
                     /locus_tag="VGD38_07160"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: protein motif:HMM:NF008692.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEY0727827.1"
                     /translation="MTRRRFYAPPSAFNFTKRTVTLTADEARHLREVLRLKPGDEVSV
                     FDGAGKEFRARVAQARREFAELDLDEEIAPARPESPLQIELAVALLKGEKFDLVVQKA
                     TELGVTKIIPLTTKHADIKLRDESDANKRVARWQRIALEAAKQCGRGIVPEVTAPNSF
                     KSVLKNPCLLFSEKGGHGLTQIDTDSVTAIIGSEGGWSDEEIEQARDAGAQIVTLGGR
                     ILRAETAAITAATLLQHRFGDLK"
     gene            complement(922..>1577)
                     /locus_tag="VGD38_07165"
     CDS             complement(922..>1577)
                     /locus_tag="VGD38_07165"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF018076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEY0727828.1"
                     /translation="RIYELPSSSVRDMNVREVEQRDWLEEWKKNWQPVAVGRFVIAPP
                     WSEIDDKPDHCVIRIEPGMAFGTGTHETTRLCLAAMQSYYEGGSFLDVGTGTGILAIA
                     AAACAPGAHVEAFDTDAEAIEIARENAVANGVADRISFHVGSIDEQTSSADFICANLT
                     ADVISRLLPTLVALSCGRLVLSGILETQIDEIVERLGQLAITDVEITRDGEWVAMIV"
BASE COUNT          308 a          507 c          411 g          351 t
ORIGIN      
        1 tcgcgcctgc atcgatgttg aggcgctgcg ccaggtcctt ccgagctttt tcgactgcgt
       61 cttctttgct gagtgacata cgattcaaac gaccgggtcg tgtcctttgt tccgggtgcg
      121 tagcccattt tgagcctgtc aaaggctgcg gtcaatgtgc gcgcgtcatt tcagatcgcc
      181 gaagcggtgt tggagcaggg tggcggcggt aattgcggcg gtttccgcgc gcaggatacg
      241 gccgccgagc gtgacgattt gcgcgccggc gtcgcgtgct tgttcgattt cctcatccga
      301 ccaaccacct tcagaaccga tgattgcggt gactgagtcc gtgtcaatct gtgttagtcc
      361 gtggccgccc ttttcagaga acaggaggca gggatttttt aagaccgatt taaatgaatt
      421 tggcgccgtg acttcgggga caatccctct cccacactgt ttcgcggctt cgagggcgat
      481 gcgctgccag cgtgcgacac gcttgttcgc gtcgctttcg tcgcgcaact tgatgtccgc
      541 gtgcttagtc gtcagcggaa tgattttcgt tacgccaagc tccgttgctt tctgcacgac
      601 gagatcgaac ttctcacctt tcaacaatgc caccgcaagt tctatctgca acggcgactc
      661 cggcctggcc ggcgcgatct cttcatcgag atcgagctct gcaaactcgc gtcgcgcctg
      721 ggccacgcgc gcgcgaaact ctttccctgc gccatcgaaa acagaaacct cgtcgcccgg
      781 tttcaaccgc agcacttcgc gcaaatgacg cgcttcatca gccgtcagcg tcacagtgcg
      841 tttcgtgaaa ttgaacgcgc tcggaggcgc gtaaaaccgg cgacgcgtca tctctcaaac
      901 aatcaaccga ctcacaaact ttcaaacaat catcgctacc cactcgccat cgcgtgtgat
      961 ctcgacgtca gtgatcgcca attggcccag ccgctcaact atctcgtcga tctgtgtctc
     1021 caaaatcccg ctcaaaacca accttccgca actcaacgcc accagcgtag gcaacaaccg
     1081 cgagataaca tccgcggtca ggttcgcgca aataaaatcc gccgagctcg tttgctcgtc
     1141 gatcgagccg acgtgaaaac tgatccggtc cgcgacgcca ttcgccactg cattctcacg
     1201 cgcaatctcg atcgcctcgg cgtcggtgtc gaacgcttca acgtgtgctc cgggcgcgca
     1261 cgccgcggcc gcaatggcga gtatgcccgt gccggttccg acgtcgagaa aactgccgcc
     1321 ttcgtaatag ctttgcatcg ctgcgagaca cagccgcgtt gtttcgtgag tccccgtccc
     1381 aaacgccatt cccggctcaa tgcgaatcac gcagtgatcg ggcttgtcat caatctcgga
     1441 ccacggcggc gcgatgacga aacgtcccac tgcaaccggc tgccagttct tcttccattc
     1501 ctcgagccag tcgcgttgct caacctcgcg aacgttcatg tcacgcacgg acgacgacgg
     1561 cagctcataa atccgca
//
LOCUS       DASWTX010000467         2212 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_72397, whole genome shotgun sequence.
ACCESSION   DASWTX010000467 DASWTX010000000
VERSION     DASWTX010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2212
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72397"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..674)
                     /locus_tag="VGD38_07170"
     CDS             complement(<1..674)
                     /locus_tag="VGD38_07170"
                     /EC_number="3.1.-.-"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: protein motif:HMM:NF013755.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_function: GO:0033890 - ribonuclease D activity
                     [Evidence IEA];
                     GO_process: GO:0042780 - tRNA 3'-end processing [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HEY0727829.1"
                     /translation="MTKYELIRTADELRKAIDTLTSQPVVGLDTETTELDPYTSRLRL
                     IQLAAPDRVYIIDFDKFADADTRKSEALEPLRRLLAAPRPIKIAHNAKFDAKFLKHNL
                     GIDLGGLFDTLLASQLVGAGDIEERHGLETVAERYLNELVDKSERLSNWNLELTEAQL
                     EYAARDAAILLPLREKLIERLKSESLVRVAQLEFECVMPVVDIELAGFFMHKDRWLEQ
                     LGIVEKR"
     gene            complement(675..1199)
                     /locus_tag="VGD38_07175"
     CDS             complement(675..1199)
                     /locus_tag="VGD38_07175"
                     /inference="COORDINATES: protein motif:HMM:NF017015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY0727830.1"
                     /translation="MRQRVLTPHPGLSTGIGYYLSGMEEVRSQLVDAVKDIPDDLIGK
                     PAFLGAHSIGGLVLHIGEAEWFWMQMVVSGRQLTDEVRKAPYWDILDDVEAVGRNGYS
                     AAFCLAEIEKIRNQTRDVLFSYSDKDLERIIHFERPDKPTEHNLRWILHHLIDHEAQH
                     KGQILMLKRLMALS"
     gene            complement(1196..>2212)
                     /locus_tag="VGD38_07180"
     CDS             complement(1196..>2212)
                     /locus_tag="VGD38_07180"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY0727831.1"
                     /translation="AGYFSDRLGKRKWLVVGGYALASVVRPFLGFAQNWQQVLAIRLT
                     DRVGKGIRAAPRDAMIADAVTPEQRGLAFGFHRAMDHGGAMIGPLIGYVLLVLFVANR
                     DTPTAPEFTTIFLVASVPALLAVLVAIFFMRETPVHVERPKERPKLSLRGFDGNFKRF
                     LLILALFTLSNSSDSFLLLRASESGVSFVLIPLLWAAHHGTKVLSSLYGGDLSDRLGR
                     KRLIVSGWILYAAVYAGFAFATQAVSIWVLFLIYGIYFGLVEGAEKALVADLVRPEQR
                     GTAYGLYNLAFGITVFPASLLMGMIWDWKGPTTAFLISAVMGATAAALLFLFVRPHPE
                     RITT"
BASE COUNT          527 a          684 c          569 g          432 t
ORIGIN      
        1 cgcttctcga cgatgcctaa ttgttcgagc cagcgatctt tgtgcatgaa aaagcctgcc
       61 agctcgatat ccaccaccgg catcacgcac tcaaactcaa gctgcgccac acgcaccaac
      121 gactccgact tcaatcgctc gattaatttt tctcggagcg gcaagagaat cgccgcatca
      181 cgcgccgcgt attccagttg cgcttccgtc aattcaagat tccagttact gagccgctcg
      241 cttttatcga caagctcgtt cagataacgt tccgcaaccg tctccagccc gtgacgctct
      301 tcgatatcgc ctgcgccgac cagttgactc gccagcagcg tgtcgaacaa cccgccgaga
      361 tcgataccca gattgtgctt gagaaacttc gcgtcaaact tcgcgttgtg cgcgatcttg
      421 atcggacgcg gcgccgccag cagacggcgc aatggttcca gcgcttcgct ctttcgcgta
      481 tcggcgtcag cgaatttgtc gaagtcgatg atgtaaacgc gatccggtgc tgctaactgg
      541 atcaggcgta gccgtgaggt atacggatcg agttcggtcg tctcggtgtc cagtccgaca
      601 actggctggc tcgtgagagt gtcgattgct ttccggagtt catcggcggt tcttatcagt
      661 tcgtacttgg tcatttaact caaagccatc aaacgcttca gcatgaggat ctgccccttg
      721 tgctgcgctt cgtgatcgat cagatgatgc agaatccagc gcaggttgtg ctccgtcggc
      781 ttgtcaggcc gctcgaaatg gatgatgcgc tcgagatcct tgtcgctgta agaaaagagc
      841 acgtcgcgcg tttgattgcg aatcttttcg atttccgcca aacaaaacgc cgcgctgtag
      901 ccgttgcggc ccactgcctc aacgtcgtca agaatgtccc agtagggagc tttcctgact
      961 tcgtccgtga gttgacgacc ggaaacaacc atttgcatcc aaaaccactc ggcctcgccg
     1021 atgtgcaaca cgagcccgcc gatcgaatgc gcgccgagaa acgccggctt gccgatcaaa
     1081 tcgtcgggaa tgtccttgac cgcatcaaca agctggctgc gcacttcttc catgccgctg
     1141 aggtaatagc cgatgccagt cgatagccca ggatgaggag tcagcactct ctgtctcatg
     1201 tagtaatcct ttcaggatgt ggccgcacga acaagaacaa cagcgccgcg gccgtggcgc
     1261 ccatcaccgc actgatcagg aatgcggtcg tgggaccctt ccagtcccaa atcataccca
     1321 tcaacagcga cgcgggaaac accgtgatgc cgaaagcgag attatatagt ccgtacgccg
     1381 ttccgcgttg ttcgggccgc acgagatcgg cgaccagtgc tttctcagca ccttcaacca
     1441 aaccgaaata tatcccgtag atcaaaaaca gcacccagat cgacacggcc tgcgtcgcaa
     1501 aggcaaaacc ggcgtaaacc gccgcataaa gaatccaacc cgagacaatc aaccgcttgc
     1561 ggccgagacg atcggaaaga tctccgccgt acaacgaact caaaaccttc gttccatgat
     1621 gcgccgccca aagcaacggt atgagaacga aagaaactcc cgactcgctc gcccgcagga
     1681 gcaaaaaact gtcagacgag ttcgaaagtg tgaacagcgc aaggatgagc agaaagcgtt
     1741 tgaagttgcc gtcaaagcca cgtagtgaaa gcttcggccg ctcttttggc cgttcgacgt
     1801 gtaccggcgt ctcgcgcatg aaaaagatgg cgaccagaac ggcgagaagc gcgggcaccg
     1861 aagcaaccag gaagatcgtc gtaaactcgg gcgccgtcgg cgtgtcgcgg ttcgccacaa
     1921 acaacaccaa cagcacgtaa ccaatcaacg gcccgatcat cgcgccgccg tgatccatcg
     1981 cgcgatgaaa accgaacgcc aggccgcgct gttccggcgt caccgcgtcg gcaatcatcg
     2041 cgtcgcgcgg cgctgcacga atccccttac ccacgcgatc cgtcaatcga atcgccagca
     2101 cctgctgcca gttttgcgca aaaccgagaa acggccgaac cacagacgcg agtgcgtaac
     2161 cgccaaccac gagccacttt cgtttgccca agcgatcgct gaagtaaccg gc
//
LOCUS       DASWTX010000468         1547 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_29507, whole genome shotgun sequence.
ACCESSION   DASWTX010000468 DASWTX010000000
VERSION     DASWTX010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29507"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1002
                     /locus_tag="VGD38_07185"
     CDS             <1..1002
                     /locus_tag="VGD38_07185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727832.1"
                     /translation="LSHGFKSHGEVSLNGVNIGANLVGIGGEFCNAGRQSLSCQFSHI
                     RGAVLFRARFKTDGEVNFFGATTAGGLSFSGAEFQGTAANGLKLQNANIAGTLQWKNV
                     ILTPVTVLNLSHLKVGQLEDDERSWPAAGKLVLDGFQYDAIASVPLDTRRRKIWLKSH
                     LEYLKRQAPDEFTLQPHRQLADILRKSGYEDNARDVLIEMHKARREQGGFSNSGWIWS
                     WILQVTIGFGYRSHRTFLWALLFVILGAFLFNAGYRAGHLVAPKPDTKPVSQFSAIGY
                     SVDSFLPIINLHQEELWVPTGVGAGRWIQYYYWSHIFLGWALITLGVAGFTGLVRKE"
     gene            1005..1289
                     /locus_tag="VGD38_07190"
     CDS             1005..1289
                     /locus_tag="VGD38_07190"
                     /inference="COORDINATES: protein motif:HMM:NF021552.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2277 domain-containing protein"
                     /protein_id="HEY0727833.1"
                     /translation="MCRNIKTLHNFEPPATEEEIRASAIQFVRKLSGFTKPSKTNEAA
                     FNRAVEKVTDAAQELLESLVTNSPPRDRETEAAKARARAAERFPAVSAGN"
     gene            1290..>1547
                     /locus_tag="VGD38_07195"
     CDS             1290..>1547
                     /locus_tag="VGD38_07195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727834.1"
                     /translation="MAPAVWPHLFIAKQFLEPDTCRRVVAEMSAAQGDAATVYGKNTS
                     GSVEQSVRRTLRIRPSVATVETIVSRLLDVKELVEKHFSVAL"
BASE COUNT          326 a          377 c          486 g          358 t
ORIGIN      
        1 ctcagtcacg gtttcaagtc tcatggtgaa gtgagtttga acggcgtaaa catcggcgcg
       61 aatctcgtcg gcattggtgg cgaattctgc aacgccggga ggcagtcgct gtcgtgtcag
      121 ttcagtcata tcaggggcgc agttttgttt cgcgcgaggt ttaagactga tggcgaagtg
      181 aactttttcg gagcgacgac cgccggcggg ctcagtttta gtggcgctga gtttcagggc
      241 acagccgcga acggtttgaa attgcagaac gcaaatatcg ccggcacgct gcaatggaag
      301 aacgtgatct tgacgccagt tacggtcttg aacttgtcgc atctgaaagt gggccagctt
      361 gaagacgacg aacggagttg gcccgcggcg gggaagctgg tgctcgatgg ttttcagtac
      421 gacgcgatcg ccagtgtgcc gctggatact cgcagacgca aaatctggct caagtcgcat
      481 cttgaatacc tgaaacgcca ggcgccggat gaattcactt tacagccgca ccgccagctt
      541 gccgacattt tgcgaaagag tggttacgag gataatgcgc gagacgtgct gatcgagatg
      601 cacaaagcgc gtcgcgaaca gggcgggttt agtaattcag gatggatttg gagctggata
      661 ctccaggtca cgatcggttt tggttaccgg tcgcaccgca cgtttctgtg ggcgttgttg
      721 tttgtgattc tcggagcatt tcttttcaac gcgggttaca gggccggaca ccttgttgcg
      781 ccgaagccgg acacgaagcc tgtgagccag ttcagcgcga tcggctattc ggtcgactcg
      841 tttctgccga ttatcaatct gcatcaggaa gagctgtggg tgccgacggg cgttggggcc
      901 gggcgctgga tacaatacta ctactggagt cacatttttc tgggttgggc attgatcacg
      961 ttgggtgtgg ctggttttac aggtcttgta aggaaagagt aatcatgtgt cgaaatatca
     1021 aaacgctgca taacttcgaa ccaccggcaa ctgaagagga gattcgcgcg tccgcgattc
     1081 agttcgtacg caagctgagc ggttttacga agccgtcgaa aacaaacgag gccgcgttta
     1141 atcgcgcggt tgaaaaagtg actgacgcgg cgcaggagct gctcgaatcg ctcgttacca
     1201 attcgccgcc gcgcgatcgc gagaccgaag ctgcgaaggc gcgtgcgcgt gctgccgagc
     1261 gctttccggc tgtgagcgcg ggaaactgaa tggcgcccgc tgtttggcct cacctcttca
     1321 tcgctaaaca attcctcgag ccggacactt gccgccgtgt cgtggcggag atgagcgccg
     1381 cgcaaggtga tgcggcgacg gtttacggga agaacacctc gggttctgta gagcagagtg
     1441 ttcggcgaac gctgcgtatt cgtccttctg tcgcgactgt cgaaacgatc gtgagtcgct
     1501 tgttggacgt gaaggaactc gtcgagaaac atttcagtgt tgcgttg
//
LOCUS       DASWTX010000469         2706 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_243933, whole genome shotgun sequence.
ACCESSION   DASWTX010000469 DASWTX010000000
VERSION     DASWTX010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2706)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2706)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2706
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243933"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..653)
                     /locus_tag="VGD38_07200"
     CDS             complement(<1..653)
                     /locus_tag="VGD38_07200"
                     /inference="COORDINATES: protein motif:HMM:NF014305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727835.1"
                     /translation="MTDPNIDRTLTARINLYYDLHLPSNAPAPLLIALHGYGANKRQM
                     MREAQLMAPEGFAIASLQGFHQHIREPWQQGGPLRFGFGWLTNFRPEESVAIHHQVLL
                     DLISRLTEEGVADSTQIFLLGFSQSCALNYRFAFTHPEKLRGVIGICGGIPGDWETNH
                     AYHGSNLNVFHLAGTRDEFYTPERVRDYERQLATRARQVTFKSYDAAHEIVPQMREDV
                     "
     gene            784..1101
                     /locus_tag="VGD38_07205"
     CDS             784..1101
                     /locus_tag="VGD38_07205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEY0727836.1"
                     /translation="MKFPGGFNMQAMMKQAQQMQEKMQKEMEELRVDASAGGGVVTVQ
                     MKGNHEIIALKIDPEAVKDGDVEMLQDMIVAAANEANRKVDEALKGKIGGMLPPGLGG
                     LFG"
     gene            1111..1725
                     /gene="recR"
                     /locus_tag="VGD38_07210"
     CDS             1111..1725
                     /gene="recR"
                     /locus_tag="VGD38_07210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HEY0727837.1"
                     /translation="MLEYAEPVTKLIDELKRLPSIGHKSAQRLAFHIMRIPEADLERL
                     IVALREVKQKIVFCSVCNNLTEVEPCRFCSSPSRDHSVICVVEEPHSLVAVEKTRSFK
                     GVYHVLHGSLSPIRHIGPSELHLANLLPRLKPENNDGVKVTEVILATNPTTEGEATAN
                     YISRLLKPLGLRVTRIAMGMPVGSDLEYVDEVTMDKALANRHEI"
     gene            complement(1799..2407)
                     /locus_tag="VGD38_07215"
     CDS             complement(1799..2407)
                     /locus_tag="VGD38_07215"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HEY0727838.1"
                     /translation="MVELIPSQEAVMQILKRTGAFREGHFVYPNGKHSPHYFQMPLAF
                     RYYDTARVLAVALSRKFRLEKDISSQLPKVSVISPSSGGIPVAFGVRDALNAEQIYWA
                     EQEHGGRMFRQYVNQGEVNPCIIVDDIIRSGNAIEETVELVKSLGARIIGCGAIVRFD
                     SAPSEVEGVPIKSLVDFDVSLYESGEECVDCKKGATPEQVRY"
     gene            complement(2452..>2706)
                     /locus_tag="VGD38_07220"
     CDS             complement(2452..>2706)
                     /locus_tag="VGD38_07220"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEY0727839.1"
                     /translation="EEIGLEVSHVEIFTARSFKRPRQVEILFRCRPSTQGSQAAQIKP
                     LTMEVERAEWFSVQNLPDGLPNDQRLLIDRATTYGANGRD"
BASE COUNT          622 a          713 c          762 g          609 t
ORIGIN      
        1 acgtcctcgc gcatctgtgg gacgatctca tgcgctgcgt cgtagctttt gaaagtgacc
       61 tgccgcgcgc gggtggcgag ttgtcgttcg taatcacgca cgcgttcagg tgtgtagaac
      121 tcgtctcgtg ttccagcgag gtgaaaaacg ttaaggttcg atccgtgata tgcgtgattc
      181 gtttcccagt cgccgggaat gccaccgcag attccaatca cgccgcgcaa cttttccggg
      241 tgcgtgaacg cgaaccgata attgagcgcg cacgactgcg aaaagccgag tagaaagatt
      301 tgagttgagt cggcgacgcc ctcttcagtc aaccgagaga tgagatctag taaaacctga
      361 tgatgaatgg ccaccgattc ttcgggtcga aaattcgtta accaaccaaa cccaaaacgc
      421 agtggtccac cttgttgcca cggctctctg atgtgttgat gaaagccctg caaggacgcg
      481 atcgcgaaac cttcaggcgc catcaactgt gcttcgcgca tcatctgccg cttgttggcg
      541 ccgtagccgt gcagcgcgat cagcagcggc gcgggcgcgt ttgagggtag gtgcagatcg
      601 tagtaaagat tgatccgggc ggtcagggta cggtcaatat ttggatcggt catagtcttg
      661 gacgttcatt ctgtttattc tgtgcaccgt gtcaatagct agcttgaact caaaactgat
      721 ggcggctagg atgggcatct cagttcgagt gagtttggct aattctttct aagaggtgtg
      781 gcaatgaaat ttccgggcgg attcaacatg caggcaatga tgaagcaggc gcagcagatg
      841 caggaaaaga tgcagaaaga gatggaagag ctgcgcgtcg acgcttcagc gggtggcggt
      901 gtcgtcaccg tgcagatgaa gggcaatcac gaaatcatcg cgctgaaaat cgatcccgag
      961 gcggtgaagg acggcgacgt cgagatgctt caggacatga tcgtggctgc tgcaaacgaa
     1021 gcaaaccgca aggtcgatga agcgcttaaa ggcaagattg gcggaatgtt gccgcccgga
     1081 cttggcggtc tcttcggtta atacgtagca atgttggagt acgcggaacc agtcaccaaa
     1141 ctcatcgacg aactgaaacg cttgccgagt atcggacaca agtctgcgca gcgtctcgcg
     1201 tttcacatca tgcgcattcc cgaagcggat ctggaaaggt tgatcgtcgc tttgcgcgaa
     1261 gtgaaacaga agatcgtttt ctgttcggtc tgcaacaacc tcacggaagt cgagccgtgc
     1321 cggttttgtt cgtcgccgag ccgcgatcat tccgtgatct gcgtggtgga agagccgcac
     1381 agtcttgttg cggtggaaaa gacgcgaagc ttcaagggcg tctatcacgt gttgcacggc
     1441 agtctctcgc cgattcgtca cattggacca agcgaacttc acctcgcgaa tctcctgccg
     1501 cggctgaaac cggaaaacaa cgatggggtg aaggtgacgg aagtaattct cgcgacgaac
     1561 ccgacgaccg aaggcgaggc cacggcaaat tacatcagcc gtttactgaa gccgttagga
     1621 ctgcgcgtga cacgaattgc gatgggaatg ccggtcggca gcgacctcga atacgttgat
     1681 gaggtaacaa tggataaggc gctagccaac cggcacgaga tctaagccgc agttttgagt
     1741 tcaagcttta gcttgttact cgccaaagca gcctaaaggc tgaactcaaa acactctcct
     1801 aataacgaac ctgttcgggc gtcgctcctt ttttgcaatc aacacactct tcgccgctct
     1861 cgtacaagct cacatcaaaa tccaccagcg acttgatcgg cacgccttca acttcactcg
     1921 gcgctgaatc gaaacgcacg atcgcgccgc aaccgatgat gcgcgcgcca agcgacttca
     1981 ccaactccac tgtttcctcg atcgcgttgc cgctgcggat gatgtcgtcg acgataatgc
     2041 agggatttac ctcgccctga ttaacgtact gccggaacat acgcccgccg tgttcctgtt
     2101 ccgcccaata gatctgttcc gcgttgagcg catcacgcac accgaaagcg actggaattc
     2161 ctcccgagct cggactaatg accgaaactt ttggcaactg actggagatg tctttttcaa
     2221 gccggaactt gcggctcaac gccactgcca gcacgcgcgc tgtgtcgtag tagcgaaagg
     2281 cgagtggcat ctgaaaataa tgtggcgagt gcttgccgtt gggataaacg aagtgacctt
     2341 cgcgaaacgc gcccgtgcgt ttcagaatct gcatcaccgc ttcttgggaa ggaatcagct
     2401 cgaccatgtc gttctccagt ttgtgtttgg tagttgcgcg ctgagcatac atcaatcgcg
     2461 gccatttgct ccatacgtgg tcgcgcgatc gatgagcagt cgttgatcgt tgggcagacc
     2521 gtccggcaag ttctgcactg aaaaccactc ggcgcgttcc acttccatcg tgagcggttt
     2581 tatttgagcg gcttgcgagc cctgtgtgct tggccggcag cgaaacagta tctcgacctg
     2641 gcgtggtcgt ttgaatgaac gtgcggtgaa gatttccacg tgactgactt cgagaccgat
     2701 ctcttc
//
LOCUS       DASWTX010000470         4600 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_265977, whole genome shotgun sequence.
ACCESSION   DASWTX010000470 DASWTX010000000
VERSION     DASWTX010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4600
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265977"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..330)
                     /locus_tag="VGD38_07225"
     CDS             complement(<1..330)
                     /locus_tag="VGD38_07225"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease signature motif containing
                     protein"
                     /protein_id="HEY0727840.1"
                     /translation="MSLVRISAALRRQVRERASESCEYCLLAEVKAFFPHEPDHIIAQ
                     KHGGQSALNNLALACFDCNRFKGSDIASVDPDSGAITPLFNPRVDRWREHFRFDRGRI
                     IPLTAVGR"
     gene            complement(327..623)
                     /locus_tag="VGD38_07230"
     CDS             complement(327..623)
                     /locus_tag="VGD38_07230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727841.1"
                     /translation="MKREVFTTKPNKPFPGPFVERKSYDEIVDFFARGFSPAEVLAFR
                     PSEETLERVRYLLDRNAADELTEEEAEELEYLGEVEHFMQLVKARAQAYVETKT"
     gene            797..1240
                     /locus_tag="VGD38_07235"
     CDS             797..1240
                     /locus_tag="VGD38_07235"
                     /inference="COORDINATES: protein motif:HMM:NF024915.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0727842.1"
                     /translation="MFQQAEQAFGRRKLGSENLAQAEKQLSNLACLCKEQPAGLHAKE
                     QLRVVQEELANHSLSIALFYLGKFYDGRGGQAGAVSRLKHIIERYPEYSKLDQALFLL
                     GEINMKARNFDEAAGYYRQLISAYPASQYTGEASLQLNAIGILKN"
     gene            complement(1249..3825)
                     /locus_tag="VGD38_07240"
     CDS             complement(1249..3825)
                     /locus_tag="VGD38_07240"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR02504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin-dependent
                     ribonucleoside-diphosphate reductase"
                     /protein_id="HEY0727843.1"
                     /translation="MSATIGKKVGNIPAGSPTVSPRRKSHELGLNARKVVSKRYSLKD
                     SKGRAYEEWADIVKRVVGHVSKAETGEKREKFFAAMSEVMLAREFIPNTPCLVNAGKV
                     NGQLAACFVLEVPDSLSGIMDHAKAAATIHQTGGGTGMTYEFLRPHGAMVSSATGVAS
                     GPVSFMNIVNQVTDVVKQGGVRRGANMGMMRVTHPDVLRFIHAKNDQHSLTNFNISVN
                     VTDKFLKAVDNNEWFQLEFNDEPWTEAIFDPVRDGDYVVYRRPDGSTVTFCDRQAFLD
                     ADLSNCTIEEPPRFGMIFALDIWNRIVASAHKYAEPGIAFIDEVNRHNHMMKSMGPIY
                     SCNPCGEQFLHFSNSCNLGSIDLAKFYDPEKRINWDHLREVTHLCTRFLDNVIDTCAW
                     PLPEINDVVHRTRPVGLGIMGFADLCLNLNITYGSTASIDLMDEVMGFVRRESWMESN
                     RLGAEKGAFPEFEPNREAYSDFLYNQIGIPRDIPLTPRNYEVTTIAPTGTISLVAETS
                     SGIEPNFSWAYVRKDTLGTRTYVHTLAARALGIDVDQCDQDSIDAAAAYVVEHENELP
                     PHFISAMNISAEQHVHVLAAAQRNVDNSVSKTCNGAVNDTVESVDALYRLGRQLGCKA
                     VSYYRDGSRENQVLTSMKAEEPKGEVACNPEAVVEPLEEAVSAAEATAADETSARQEA
                     IEREHSETVKVPAVTAIRIERPRELRGATWQIPFDGQNLYVTVNHDGKMIQEVFATGP
                     ISGGVGLLASKMLRGGFDAAEVAYSLNKVTGTHAVWFNERLLTSPEQAVAECIMITVR
                     RVQDLPDSARAVNKAQHHTQKPVTGAIMSNMIGICPECHGQLEHASGCDFCRDCGYSK
                     CK"
BASE COUNT         1054 a         1271 c         1192 g         1083 t
ORIGIN      
        1 tcgaccaacc gctgtcaggg gaatgatacg gccacgatcg aaccggaaat gttcacgcca
       61 acgatcgact cgtgggttga ataatggagt gattgctccc gaatccggat cgacagaagc
      121 tatgtcggag cccttgaagc gattgcaatc gaaacaggcc agagcaagat tgttgagcgc
      181 gctttgccct ccatgcttct gcgcaataat gtgatcaggc tcgtgaggaa agaaggcttt
      241 tacttcagct aataagcaat actcgcaact ttcgcttgct ctttcccgca cctgccgccg
      301 taaggctgcg gagatacgga ccaggctcat gtctttgtct caacgtatgc ctgtgctctg
      361 gcctttacca actgcatgaa gtgttccact tctccgagat actccagctc ttcagcttct
      421 tcttcagtca attcatccgc tgcgtttcgg tccaataaat aacgcactcg ttcaagcgtt
      481 tcttcggaag gtcgaaaagc aagcacttcg gcgggtgaga accctcgtgc aaagaaatcg
      541 acaatctcat cgtagctctt ccgctcgacg aaaggaccag gaaacggttt gttcggttta
      601 gttgtaaaga cttcgcgctt cataatgccg ctggatttac tgtgggcatt ctaacatcta
      661 actgtatact gccgaagcgc aagtgttctt gttcgattag gaccgaaaca ccatgagact
      721 ggcttttcag ctggctttgt tattactaat gttcgctttc cctggcgcaa ctcaggcgtc
      781 gcagtgtacg gaggagttgt ttcagcaagc ggaacaagca tttgggagga gaaaactcgg
      841 ttcggaaaac ctggcccagg cagaaaagca attgagcaat cttgcctgtc tttgtaagga
      901 acagcccgcc ggcttacacg cgaaagaaca gttaagagtc gtacaggaag aactcgcaaa
      961 ccatagtctc tcgatcgcgc ttttttatct gggcaagttc tacgatggca gaggcgggca
     1021 agcgggtgcg gtttctcgac taaagcacat tattgaaagg tacccggagt attccaaact
     1081 cgatcaggca ctctttctgc ttggcgagat aaacatgaag gctcgcaatt tcgatgaagc
     1141 ggcgggctac tatcgacagc tcatcagcgc atatccggcc agtcaataca ccggcgaggc
     1201 ttcgctacag cttaacgcaa tcggtatttt gaagaactaa aaaacagctt acttacactt
     1261 gctgtatccg cagtcgcggc agaagtcgca gccgctggcg tgttcgagtt ggccgtggca
     1321 ctcggggcag ataccgatca tgtttgacat gatcgcgccg gtgacgggtt tctgggtgtg
     1381 atgctgtgct ttgttaacag cgcgtgcgga gtcagggaga tcctgaaccc gccgcacggt
     1441 gatcatgatg cactccgcaa ctgcctgctc gggtgaagtc agcaaacgtt cgttgaacca
     1501 gacagcgtgc gtgccggtta ccttgttaag actgtaagcc acttccgctg catcaaagcc
     1561 gccgcgcaac atcttcgaag caagcagacc cacgccgccg ctgattggac cagtggcaaa
     1621 cacttcctgg atcatcttgc cgtcgtgatt gacggtgacg taaaggttct gaccgtcgaa
     1681 aggaatctgc caggtcgcac cccgcaactc acgcgggcgc tcgatgcgaa tcgcagtcac
     1741 ggccggaact ttcacagtct ccgaatgttc gcgctcgatc gcttcctgac gcgccgaagt
     1801 ctcatcggcc gccgtcgctt ccgctgcact cacagcttct tccaacggct ccacaactgc
     1861 ttccgggtta caagcgactt cgcccttcgg ctcttccgct ttcatcgacg tcaacacctg
     1921 gttctcacgc gaaccatcgc gatagtaact gacggctttg caaccaagct gccgcccgag
     1981 gcgatacaat gcatccaccg attcaaccgt gtcgttaacc gcgccattgc aggtcttcga
     2041 cacactgtta tcgacgttgc gctgagcagc cgcgagcaca tgaacgtgct gctcagcgct
     2101 tatgttcatc gccgagataa agtgcggcgg caactcattc tcgtgttcca cgacataagc
     2161 cgcagccgca tctatcgaat cctgatcgca ttggtccaca tcaattccga gcgcgcgggc
     2221 cgcaagcgtg tgcacgtaag tgcgcgtgcc caacgtgtct ttgcgaacat aggcccacga
     2281 gaaattcggc tcgatacccg aagacgtttc ggcaacgagc gagatcgttc cggtcggcgc
     2341 aatcgtcgtc acttcgtagt tgcgcggcgt gagcggaata tcgcgcggga tgccgatctg
     2401 gttgtaaaga aaatcgctgt acgcctcgcg attcggttca aactccggaa acgcgccctt
     2461 ctcagcgccc aaccggttgc tctccatcca cgactcgcga cgcacgaagc ccatcacttc
     2521 gtccatcaga tcgatcgaag ccgtcgaacc ataagtgatg ttcaagttca aacagagatc
     2581 cgcaaaaccc atgatgccca aaccaacggg acgcgtccga tggaccacgt cgttgatctc
     2641 cggcaacggc caggcgcacg tatcgatcac gttatcgaga aaacgcgtgc agaggtgcgt
     2701 gacttcgcgc aggtggtccc agttgatccg tttctcggga tcgtaaaact tcgcgagatc
     2761 gatcgaaccg aggttgcacg agtttgagaa gtgcagaaac tgttcgccgc acggattgca
     2821 cgaatagatc gggcccatcg acttcatcat gtgattgtga cgattcactt cgtcgatgaa
     2881 agcaataccc ggttcggcat acttgtgcgc gctggcaacg atacggttcc aaatatccag
     2941 agcgaagatc atgccgaagc gcggcggctc ttcgatcgtg cagttggaaa gatccgcatc
     3001 gagaaacgcc tggcgatcgc agaacgtcac cgtcgatccg tcaggccggc gatagaccac
     3061 gtaatcacca tcgcgtacgg gatcgaagat cgcttcggtc caaggctcgt cgttgaactc
     3121 caactgaaac cattcgttgt tatcgaccgc tttcaaaaac ttatcagtaa cgttaaccga
     3181 gatattgaaa ttggtgagcg agtgctgatc gttcttcgcg tgaatgaagc gcaggacgtc
     3241 cgggtgcgta acgcgcatca tgcccatgtt ggcgccgcgt cgcacaccgc cctgtttcac
     3301 cacatcggtc acctggttaa cgatgttcat aaacgacacc ggccccgaag caacaccggt
     3361 tgcggagctc accatggcgc catgtgggcg caggaactca taggtcatgc cagtgccgcc
     3421 gccagtttgg tgaatggtgg ccgcggcctt ggcatgatcc atgatgccac ttagcgaatc
     3481 cggcacttcc agaacaaagc aggccgccag ttgtccattg actttgccgg cgttcacaag
     3541 gcagggcgtg ttcggaatga attcgcgagc gagcataacc tcgctcatag cggcgaaaaa
     3601 cttctccctt ttctccccag tttcggcttt tgagacgtgg ccgaccacgc gtttaacaat
     3661 atccgcccat tcctcatagg cgcggccttt ggaatccttg agcgaatagc gtttgctgac
     3721 aactttcctg gcattgagcc cgagttcatg cgactttcga cgtggggaaa ccgtgggaga
     3781 tccggccggg atatttccga cttttttgcc gatagtagcg ctcatcgatc tgctgccttt
     3841 ctctctgggg agcccgaaaa tgctgtgttt tagaaacagt tatgccaggc gtatttacta
     3901 cgcaggccat tagcttagag tgtgttctga ttactacggt tggtccgcaa atcacctctg
     3961 tagcggacgg gaatatactc cgttgaatcg ggcgtgtcaa ccaatatctt gtggtgcatt
     4021 gttttttgac ggctatagag tgtggccgtc aagatatagg ctaacaaact attgacatca
     4081 ggtattcagg ggagtaaaag ctactctgat ttatcctccc aatctcaagg tgtcgttcgc
     4141 tccacgacta cgtagttact tttgttcctt aaccgacaaa ggagtcaact catgtctcgc
     4201 ttcaatggtc ctatcagact tcgcctcctg gtgttagtct cgctaattgt tgtcaccatc
     4261 tatacagctt tgccccagca agccgcgagc gcctgcatta cgtgcgttcc gctcactgga
     4321 ggactatgtg ttggttgcga tccaaacgta accacaggtt ttaactcgtg ctggccagtt
     4381 caggagactt gtagctgctc cgtgcagggc acatgcgata tgcgtattga ctagccgcat
     4441 gctcatcact cgtcaagaga tgcttgtact cgagagtacg gccaggctgt tactctcgag
     4501 cgcattggtt atgctcgcct tttcggcggc ggtaagcgcg cagcaacctc agtcgccaac
     4561 gatcattcag aaacaaacag ctctaacggt ggggaataaa
//
LOCUS       DASWTX010000471         2334 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_417513, whole genome shotgun sequence.
ACCESSION   DASWTX010000471 DASWTX010000000
VERSION     DASWTX010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2334)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2334
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417513"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..356
                     /locus_tag="VGD38_07245"
     CDS             <1..356
                     /locus_tag="VGD38_07245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727844.1"
                     /translation="MYVDSALSQRYIVRYDRNSSNQTTVLANRIDSLIFRYYDEKVTY
                     STTINADGDCDITNVVNADGNTESEVSPGSAKFIVIAVGVTLPAVGTPQTDGYQPPTQ
                     VQLTSDVVLRNSIVY"
     gene            373..2115
                     /locus_tag="VGD38_07250"
     CDS             373..2115
                     /locus_tag="VGD38_07250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727845.1"
                     /translation="MKLDVMKTNSRNSRNSHGERGAALVTMLLVTVLLLGAGGALIMT
                     TVMSANNAVGSTAEMQAFYVAESGMQSALNVLRGNSEPLVTSTDRISFRTAVIPSISN
                     GPGNSGALRLAGWLPYNDRFDEASLVPITVGTVTGGYRVTVENMDPNSHIVAFETSGV
                     IDGSDAATSYQRTFGTAGGTNEVTIRYVSQGSTTLSPDPNAFPLTLDSALGSFVIERP
                     LTSTDNDVVIPKTGFELTITQTLPWAATAYIEGSFEGEVDTNATTVKVSFDKAYVRGD
                     GTTYALNFPSGTQVLDLSYSTSPTSTSIPTRVTSPDPKRLLVKSYGFGPQGSEKRLEL
                     MITREYLEFDAPAGVTLRGADDCSPLNLDTGSSGAKYYSGIDYAGKEPQRPSFAVSPC
                     DADDADAGIKKHDTVADPEIGQLMDNASGANAVEQPSFLDTANKARTYLNALQAKAQT
                     LGRYFKPGSGSATTVNDSINSPMFTFVDGDCTLTEGSGFLVVTGTLTMRGDTDFRGAI
                     LVLGTGELIRNGGGNGDILGGITIAKFGRNSGNFEAPTFHTNGGGNSNVQYDSTALTR
                     GIASGTNVSGIREF"
BASE COUNT          491 a          685 c          683 g          475 t
ORIGIN      
        1 tgatgtatgt cgatagcgcg ttgtcccaac gttacatcgt gcgttacgac agaaatagct
       61 cgaaccagac cacggtgctg gccaatcgca tcgactcact catctttcgt tactacgacg
      121 agaaagttac gtacagcacg acgatcaatg ctgacggcga ctgcgatatc accaacgtcg
      181 tgaatgcaga tggcaacact gaaagcgaag tctcgcccgg cagcgcgaag ttcatcgtga
      241 tcgccgtcgg cgtgacgctg ccggcagttg gcacaccgca aaccgatggt tatcagcccc
      301 cgacgcaagt acaactcacg tctgacgtag ttctgcgcaa ttcgatcgtt tactaaggag
      361 cccagcccag caatgaaact cgacgtgatg aaaacaaact cccgaaacag ccgcaacagt
      421 catggtgaac gtggcgcggc gctggtaacg atgttgcttg ttaccgtgct cctgctcgga
      481 gccggcggcg cgctgatcat gacgaccgtg atgtcggcca acaacgccgt tggttcgacc
      541 gctgagatgc aggctttcta cgttgctgag tcaggcatgc agtccgcgct caacgttttg
      601 cgcggcaact cggagccgct cgtcacgtca accgatcgca tcagctttcg cacggcggtg
      661 attccgagta tctctaatgg accaggcaac agcggcgcgc tgcgtctcgc gggttggctg
      721 ccttacaacg atcgtttcga cgaagccagc ctcgtgccga ttactgtcgg aacagttacc
      781 ggtggctatc gcgtgacggt tgaaaacatg gatcccaaca gtcatatcgt tgcgtttgaa
      841 acgtcgggtg ttatcgacgg cagcgacgca gcgacgtctt atcaaagaac gttcggcacg
      901 gccggcggca cgaacgaagt tacgattcgc tacgtctctc aaggctccac cactctctcg
      961 cccgatccca acgcgtttcc gttaacactc gattcggctc tcggcagttt tgtgatcgaa
     1021 aggccgttga cgagtacgga caacgacgtt gtaattccca agaccggttt tgaattgacg
     1081 atcacgcaga cgcttccgtg ggcggcaacg gcctacatcg aaggaagttt tgaaggcgaa
     1141 gtcgatacga acgcgaccac ggtcaaagtc agttttgaca aagcttacgt gcgtggcgac
     1201 ggcacgactt acgcgctcaa cttccccagc ggcacgcagg tgctcgacct gagctattca
     1261 acttcgccaa ccagcacgtc gattccgacg cgcgttactt cgcccgatcc gaagcgcttg
     1321 ctcgttaagt cgtacggctt tggaccacag ggttcggaga agcgtctcga gttgatgatc
     1381 acgcgtgagt atctggagtt cgatgcgccc gcgggcgtga cgctgcgtgg tgcggatgat
     1441 tgttcgccgt tgaatctgga cactggaagc agcggtgcga agtattactc aggcattgat
     1501 tacgcgggca aagagccgca gcggccgtcg ttcgcggtga gtccgtgcga cgctgatgat
     1561 gcagacgcgg ggatcaagaa gcacgacacc gtggccgatc cggagattgg gcagttgatg
     1621 gacaatgcga gcggcgcgaa tgcagtcgaa cagccgtcgt tcctcgacac cgcgaacaag
     1681 gcgcgcacct atctgaatgc gctgcaagcg aaagcgcaga ctctcgggcg ttatttcaaa
     1741 cccggttcgg gttcggcgac gacggtgaac gactcgatca atagccctat gttcacgttt
     1801 gttgatggtg attgcacact gacggaggga tcgggtttcc tcgtcgtcac gggcacgctg
     1861 acgatgcgtg gcgatacaga cttccgaggc gcgatactcg tgcttggtac gggcgagttg
     1921 attcgcaacg gtggtggcaa cggcgacatt ctcggcggga tcacgatcgc gaagttcggc
     1981 cgcaactcag gaaatttcga ggcgccgacg ttccacacaa acggcggcgg caactccaac
     2041 gtccaatacg actccaccgc cctgacgcgt ggcatcgcct ccggcaccaa cgtctccggc
     2101 atccgcgagt tctaactgac ttgaatgagc gtctcctcgg cttcgccgca gatgagacgc
     2161 gcggcgctac atggtgctac cgccccgtgc gggtcccacc ccccggcttc gccgcgatgt
     2221 gagacggtgc tagtccgacg ggctgcaaag gttcctctcg ccccggcttc gccgccggat
     2281 gtgaggcgag gctagtgctc tactggctgc aaaggtccct ctcgccccgg cttc
//
LOCUS       DASWTX010000472         2548 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_200510, whole genome shotgun sequence.
ACCESSION   DASWTX010000472 DASWTX010000000
VERSION     DASWTX010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2548
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200510"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..305
                     /locus_tag="VGD38_07255"
     CDS             <1..305
                     /locus_tag="VGD38_07255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727846.1"
                     /translation="HLRDTTRCATTVGYGPRFLHSTGQLHKGGPNSGVFFQIGAKDKT
                     DFRIPREKFSFSVLKEAQALGDFRALKDEGRRVVRIDLGDDLLSGLDALAEAVQSS"
     gene            503..1570
                     /locus_tag="VGD38_07260"
     CDS             503..1570
                     /locus_tag="VGD38_07260"
                     /inference="COORDINATES: protein motif:HMM:NF010539.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEY0727847.1"
                     /translation="MKFIDKFFKDQLAIDLGTVNTLIYRPDRGVVLNQPSVVAVDRYN
                     DEVVSVGHKALRLLGREPRGIEVHRPIRSGTIFNFEVTQKMLRSFIGHVTDGYRRGHY
                     VVGIPGSATAVEQRSVRDAAHDAGGSRIDLVDEGLAAGIGAGLSFDDERAHLVVDIGG
                     GTTNVAIVASGGVVNSMSLQAAGNAMDEAIRDYVRSNYCLQIGENTAEMLKKEMGILG
                     EAISSEERKVKIVGKKLSDGAACAVHITAEEVREALEPVLGEIVTGVRRVVEDAQPEA
                     VADIYYSGMILTGGGSLLKGIKDRLQTELELRATMPEDPITTVVIGAGALLAAPEQLH
                     RCAIRPNLPVWQEAEELVVSW"
     gene            complement(1582..1704)
                     /locus_tag="VGD38_07265"
     CDS             complement(1582..1704)
                     /locus_tag="VGD38_07265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727848.1"
                     /translation="MEGPLRGLLAGVAAWKFGGGCISTILIFIIVFWLLGYVRC"
     gene            complement(2015..>2548)
                     /locus_tag="VGD38_07270"
     CDS             complement(2015..>2548)
                     /locus_tag="VGD38_07270"
                     /inference="COORDINATES: protein motif:HMM:NF013215.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727849.1"
                     /translation="DFPGKSGVRQRRQLRDRQVARVIRDAMKLPGYQVFKYENGEGKV
                     VNVTRQQINTYIKEIMGENFSAKDFRTWAGTLVCACALARAGVEMPEESTLRTQARVR
                     KRRIVEAIKETAEVLGNTPAVCRSSYVCPEVIHDFEKGKVLDSCFSNLADLVAFRGHG
                     LHNAERALLKFLSRNGR"
BASE COUNT          558 a          705 c          728 g          557 t
ORIGIN      
        1 cgcacctgcg cgacacgacc cgttgtgcca caacagtcgg ctacggcccg cgtttcctgc
       61 actcaaccgg acagctccac aaaggaggtc ccaacagcgg cgtctttttt caaatcggcg
      121 cgaaagacaa aaccgacttt cgtatcccgc gagaaaagtt ctcgttcagt gtgttgaaag
      181 aagcgcaggc gctcggcgac tttcgggctc tgaaagatga gggccggcga gtggtcagaa
      241 ttgacctcgg tgacgatctg ttgtcaggtt tggacgctct tgcagaagct gtgcagtcat
      301 cctgaacgct tcgaactcgt acgatccaga gccgtagcgc acaatagtca tacggctctg
      361 gaaacaaccc ttcaatcact ctttatcatc ttcaaagaag ttcccccgcc aagaacaatc
      421 tttcgttcag gcatacgagt tgccgccgga agctagcact cgcttcctgg atccctgcca
      481 agtctggagg aggaacgtcg ccgtgaagtt catcgataag tttttcaaag accaactcgc
      541 tatcgatttg ggcaccgtca acaccctcat ctatcggccc gaccgcggtg tcgtgttgaa
      601 ccaaccttcg gtggttgctg tcgatcgtta caatgacgaa gttgtttcag tcggtcacaa
      661 ggccctgcgg ctgctcggac gcgagccgcg cggcattgaa gtgcaccggc cgattcgttc
      721 agggacgatc ttcaattttg aagtgacgca gaagatgctg cgctcgttca tcggtcacgt
      781 taccgatggt taccggcgcg ggcattacgt tgtcggtatt ccgggttccg cgactgcggt
      841 cgaacagcgt tcggtgcgcg atgcagcgca tgacgcgggt ggcagccgga tcgatctcgt
      901 tgacgaagga ctggcggccg ggattggcgc gggtctttct tttgacgacg agcgcgcgca
      961 tctcgtggtt gatatcggag gcggcacgac aaacgtcgcg atcgtcgcgt cgggcggcgt
     1021 ggttaactcg atgagtttgc aagccgcggg taacgcgatg gacgaggcca ttcgcgacta
     1081 cgtgcggtcc aactactgtt tgcaaatcgg cgagaacacc gcggagatgc tcaagaagga
     1141 gatgggtatc ctgggtgagg cgatctcgtc tgaagagcgc aaagtgaaaa ttgtcgggaa
     1201 gaagttgagt gatggagccg cgtgcgcggt acacatcacg gcggaagaag ttcgtgaagc
     1261 gttagagcct gtgcttggtg aaatcgttac gggtgtgcgg cgtgtggttg aagacgcgca
     1321 accggaagcg gtcgcggaca tttattactc cggcatgatt ctcaccggcg gcggctcgtt
     1381 gttgaaggga atcaaagacc gattgcagac cgaactggag ctacgcgcga caatgccgga
     1441 agatccgatc acgacggtcg tgatcggcgc cggcgcgtta ttggcggcgc cggagcaact
     1501 ccatcgctgc gccatccgcc cgaatcttcc tgtgtggcag gaagcagaag aattggtcgt
     1561 cagttggtaa acgcgaactt attaacaacg gacgtaaccg agtagccaga agacgataat
     1621 aaagatcaag atcgttgaga tacatccgcc gccgaacttc cacgcggcga cgcccgccag
     1681 taatcctctg agtggtcctt ccattcaagt tctcctgttg cttcgttttc aaacacaaaa
     1741 cagctaacgc cactagttcg gcaacacgag tgccatgacg gaatcccacc cacttcagtg
     1801 ggtggatact tcaaacccta cctaccccgg gttgcgtaag aggcatcaat cccaccaacg
     1861 aagttggtgg gattgttcat aggtttggac gctaaaggtc gcaaatgaac gaaccaccaa
     1921 cttcgttggt gggattggag gttctcagtg aggttgtata ggtcaggtat gaactaaacc
     1981 accaacttcg ttggtgggat tgacgcgagt aaaatcaccg cccgtttcgc gagaggaact
     2041 tcaacagcgc gcgctcggcg ttgtgcaggc cgtggccgcg gaaggcgacc aggtcggcga
     2101 ggttgctgaa acaactatcg agtacttttc ctttctcgaa gtcatgaatc acttccgggc
     2161 agacgtatga actgcgacaa accgccggcg tgttgcccaa cacttcggca gtctctttga
     2221 tcgcctcgac gattcttcgc ttacgcactc gcgcctgcgt tcgcaaagtc gactcctccg
     2281 gcatctcgac tcccgcgcgc gcgagggcgc acgcgcacac aagcgttccg gcccacgtgc
     2341 gaaagtcttt cgcactgaag ttctcgccca tgatctcctt gatgtaggtg ttaatttgtt
     2401 gccgcgtcac gttcacgacc ttgccttcgc cgttttcata cttgaacact tgataacccg
     2461 gcagtttcat cgcgtcgcga atcactcgcg ccacttgccg atcgcgaagc tgacggcgct
     2521 gtcgcacgcc cgacttcccg ggaaaatc
//
LOCUS       DASWTX010000473         4179 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_92599, whole genome shotgun sequence.
ACCESSION   DASWTX010000473 DASWTX010000000
VERSION     DASWTX010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4179
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92599"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3100)
                     /locus_tag="VGD38_07275"
     CDS             complement(<1..3100)
                     /locus_tag="VGD38_07275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727850.1"
                     /translation="MTFLGEFVESFASLLRKPTRENDEKPFDAEFYSVERLEQYAQTL
                     AAEHKTVKRKGRAELLPRLRDNGRVLEAAYKALVEALREGRAISPAAEWLVDNYHIVE
                     EQLREIRHDLPKSYYHELPKLAGGELQGYPRIYAVALELITHTDSRLDTNTLRRFIAS
                     YQTVSPLSIGELWAVAITLRVALVENLRRLALSIARARLEREEADKLADKLLELASLQ
                     PTTINTIVTERLGKREELPHTFLVQLIQRLREQHPSVMPVMDWIEKQLGREGTSVEQI
                     IHNEHQRQAAAQVTVGNIITSMRLLSTLDWNDFFEKVSLIEPLLGNDPGNVYLRMEFS
                     SRDRYRHVIERISKRTNTSELKIAEAVVKLATEAADQNVAARKHVGYYLVDEGLAQLE
                     ALFQYRPRPGEKFRRFLLSHPTGAYLGILAALTVLLLGFLLAALSYAGASWTIVVVAG
                     LIALIPAIDLALTVINWDLTHFFPPRLLPRIDTTTGVPEEASTVVVVPTIFFSESQVN
                     ELVERLEVHFLANQDPRIYFALLGDFRDAATEETPTDSTLLSVAQSGIDTLNQRHGES
                     RFHLFHRKRMWNPSENKWMGWERKRGKLEEFNRLLRGARDTSFVVQTADDALRKSIRY
                     VITLDSDTQLPRDVARKLIGAAEHPLNRPRFDEATNRVVHGYGILQPRVSIALSSASR
                     SKFVQIFSGYTGIDPYTTAVSDVYQDFFGEGSFTGKGLYDVDAFQRALDDRVPENALL
                     SHDLFESLFARAALTTDIELLDEFPASYEAYAKRQHRWTRGDWQIVRWLFPRVPNASG
                     QKVRNPLPLIARWKILDNLRRSLLAPSLFVWFVASCTLFPGPALLWATFILIVIAFPV
                     YLHVTTGLLTHPKGIPWGSHFSSVWGELRTNTAQIAMSFVLLPYQAYLMCDAIVRTLY
                     RQLISRKKLLEWVSAAEAERSVRYDVASFISWMRPAEILALAAVGLTITFKPSALLFM
                     GVLAAIWILSPFIALWASKPRPLVRQVLNADERQFARLIARRTWRFFETLIGPEDNWL
                     PPD"
     gene            3187..3684
                     /gene="ruvC"
                     /locus_tag="VGD38_07280"
     CDS             3187..3684
                     /gene="ruvC"
                     /locus_tag="VGD38_07280"
                     /inference="COORDINATES: protein motif:HMM:NF000711.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HEY0727851.1"
                     /translation="MRVLGIDPGSQTMGWGVVEGDGRRYSLVAYGSVRAPSSMRFSAR
                     LLKMCNGIEAVIAEHRPDACALEDAFLATNVKVSMKLGQVRGVVLLAAERAGLEIHEY
                     SPRLIKQTVVGYGNAEKHQVQEMVRLLLALKTVPSPHDAADALAVAICHFHHASFKQR
                     VVAWV"
     gene            3733..>4179
                     /locus_tag="VGD38_07285"
     CDS             3733..>4179
                     /locus_tag="VGD38_07285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727852.1"
                     /translation="MNPHKLTMQLCLLLICLFLWEEHSLSKGLTPGRRGIVVDERLAA
                     LRRTPQLNGALVRRLSRGRKLTIKSSKTTPDGITFLLVSVTTRTHGWIQREAVASPAN
                     TGDDRRLLDLINASHGFDQIVRARIFLDHFPRSPLRPKVLLLLGNAA"
BASE COUNT          821 a         1167 c         1319 g          872 t
ORIGIN      
        1 tgtcgggtgg taaccagttg tcctcaggcc cgatgagcgt ctcgaaaaag cgccacgtgc
       61 ggcgcgcgat caggcgcgca aactgtcgtt cgtccgcgtt gagcacctgc cgcacgagcg
      121 ggcggggctt gctggcccaa agcgcgatga acggcgacag gatccagatc gctgccagga
      181 cgcccatgaa caatagcgcc gaaggcttga acgtgatagt cagaccaact gcggcgagcg
      241 cgaggatctc cgcgggccgc atccacgaga taaacgacgc gacgtcgtag cgcaccgagc
      301 gttcagcttc cgcggccgaa acccattcga gcagcttctt gcgcgagatc agttggcgat
      361 agagggtgcg cacgatcgcg tcgcacatca ggtaagcctg gtagggaagc agtacaaacg
      421 acatcgcgat ctgcgcggtg ttcgtgcgta gctcgcccca cacgctggag aagtggctgc
      481 cccacggaat gcctttggga tgcgtgagca gtcccgtcgt gacgtgcagg taaaccggaa
      541 acgcgatcac gatgagaatg aaggtggccc acagcaacgc cggaccgggg aagagcgtgc
      601 acgacgccac gaaccagaca aacagcgacg gcgctagtaa actgcggcgc aggttgtcga
      661 gaattttcca acgcgcgatg agcggcagcg gattgcgaac cttctggccg ctcgcgttcg
      721 gcactcgcgg aaacaaccag cggacgatct gccagtcgcc gcgcgtccaa cgatgctgac
      781 gcttggcata cgcttcgtac gacgccggga actcatccag cagctcaatg tctgttgtta
      841 aagcagcgcg cgcgaataac gactcgaaca agtcgtgact cagcaacgca ttctcgggca
      901 cgcgatcgtc gagcgcgcgt tggaaagcgt cgacgtcgta gagacctttt cccgtaaagc
      961 ttccctcgcc gaagaagtcc tggtagacgt ctgaaaccgc ggtcgtgtac gggtcgatgc
     1021 ccgtgtaacc ggaaaaaatc tgaacgaact tcgatcgtga agcactgctg agtgcgatgc
     1081 tcacgcgcgg ttgcagaatg ccgtagccgt gcacgacgcg attcgtcgct tcgtcaaagc
     1141 gcggacggtt gagcggatgt tcggccgcgc cgattagctt gcgtgcgacg tcgcgtggca
     1201 actgcgtgtc tgaatcgagc gtgatgacgt agcggatcga ctttcgcaac gcgtcgtcgg
     1261 cagtttgcac gacgaaactg gtgtcgcggg cgccgcgcag taaacggttg aactcttcca
     1321 gcttgccgcg ctttcgttcc caacccatcc acttgttttc gctcgggttc cacatgcgct
     1381 tccggtgaaa caggtggaag cggctttcgc cgtgccgctg gttcagcgtg tcgatgccgc
     1441 tttgggccac ggacagaagc gtgctgtcgg ttggtgtttc ttcagtggca gcgtcgcgaa
     1501 agtcgccgag cagtgcgaag taaatgcgcg ggtcctggtt cgcgagaaag tggacctcga
     1561 ggcgttcgac gagttcgttg acctgcgact cgctgaagaa aattgtcggc acgacgacga
     1621 ccgtcgacgc ttcttcgggc acacctgtcg tggtgtcgat gcgcggtaac aggcgcggcg
     1681 ggaagaaatg cgtcaggtcc cagttgatca ctgtgagcgc gagatcaatc gccggaatca
     1741 acgctatcaa gccggcgaca acgacgatgg tccaactcgc gccggcgtaa ctcagcgcgg
     1801 ccagcaggaa accgagcagc agaactgtca gcgcggcgag gattccgaga tacgcgccgg
     1861 tcgggtggct gagcagaaac cgccgaaact tctcgccggg tctcggacga tactgaaata
     1921 gcgcttcgag ctgcgccagg ccttcgtcga caaggtagta accgacgtgc ttcctggccg
     1981 ccacgttttg atccgctgct tcagtggcca gtttgacgac ggcttccgcg atcttgagct
     2041 cgctcgtgtt cgttcgtttg ctgatgcgct cgatcacgtg gcggtagcga tcgcgcgagg
     2101 agaattccat ccgcaaatag acgttccccg gatcgttacc gagcagcggc tcgatcaggc
     2161 tgactttttc gaagaagtcg ttccagtcga gcgtcgagag cagacgcatg ctggtgatga
     2221 tgttgccgac tgtcacctgc gccgcggcct gtcgctggtg ttcgttgtga atgatctgtt
     2281 cgacgctggt gccttcgcgg cctaactgtt tttcgatcca gtccatcacg ggcatgacgg
     2341 acggatgttg ttcgcgcagg cgctggatga gttggaccag gaacgtgtgc ggcagctctt
     2401 cgcgtttacc gagccgttcg gtgacgatcg tgttgatggt tgtgggttgg agtgacgcga
     2461 gttcgagcag cttgtccgcg agcttgtcgg cttcttcgcg ctcgagacgc gcgcgcgcga
     2521 tgctcaacgc caggcggcgc aggttttcga ccaacgccac gcgcaacgtg atcgcgacgg
     2581 cccaaagttc gccgatcgag agcggcgaga cggtttgata cgacgcgatg aagcggcgca
     2641 gcgtgttcgt gtcgagccgc gagtcggtgt gcgtgatcag ctcgagcgcg actgcgtaga
     2701 ttcgcggata gccttggagt tcgccgccgg cgagctttgg aagctcgtgg tagtaactct
     2761 ttgggaggtc gtgacgaatc tcgcgcagtt gttcttcgac gatgtggtag ttgtcgacga
     2821 gccactcggc tgctggcgag atcgcgcggc cttcgcgcag cgcttcgacg agggctttgt
     2881 aagcggcttc gaggacgcgg ccgttgtcgc gcaggcgcgg gagtagttcg gcgcggcctt
     2941 ttcgttttac ggttttgtgt tcggcggcga gggtctgcgc gtactgttcg aggcgttcga
     3001 cgctgtagaa ctccgcgtca aatggttttt catcattttc gcgggttggt ttccgcagta
     3061 acgacgcaaa cgattcgaca aactcgccca ggaaggtcac gaccaagtaa acaatagcgg
     3121 ggtttagggg gagtttcagg ataacacgaa cttgagcttt gcgctttgtt gctataattt
     3181 cgcgccatgc gcgtgttggg aatcgatccg ggcagtcaga cgatgggttg gggcgttgtc
     3241 gaaggtgacg ggcgccgcta ctcgcttgtt gcgtatggat cggtgcgtgc gccgtcgtcg
     3301 atgcggtttt ccgcgcggtt gttaaagatg tgcaatggaa tcgaggcagt gattgcggaa
     3361 catcggcctg atgcgtgtgc gcttgaagat gcgtttctcg cgacgaacgt gaaggtcagt
     3421 atgaagctcg ggcaggtgcg cggtgttgtg ttgcttgcgg cagaacgcgc agggctcgag
     3481 attcacgagt attcgccgcg tttgatcaag cagacggtgg ttggttatgg aaacgcggag
     3541 aagcaccagg tgcaggagat ggtgcgattg ctgttggcat tgaaaaccgt gccgtcgcct
     3601 cacgacgctg cggacgcgct ggcggtagcg atctgtcatt tccatcacgc gtcgtttaag
     3661 caaagagtag ttgcgtgggt ataggcccaa caggacctat atgacctatt aacctcactc
     3721 aaggagaaca acatgaatcc tcacaaactc acgatgcagc tttgtctgct tttgatctgt
     3781 ctctttcttt gggaagaaca ttccctctct aaaggcctaa cgcctggacg tcgtggaatc
     3841 gtggtcgacg aacgcctcgc cgcactgcgc cgcacacctc aactaaacgg cgcactcgtt
     3901 cgccgcctga gccgcggccg caaactgacc atcaaaagct caaaaacaac tccggacggc
     3961 atcacgttcc ttctcgtcag cgtaacaacc cggacccacg gctggattca gcgcgaagcg
     4021 gtcgcttcac ccgcaaacac tggcgacgac cgccgcctgc tcgatctaat aaatgcctcg
     4081 cacggtttcg accagatcgt ccgcgcgcga atcttcctgg atcactttcc gcgttcaccc
     4141 ctgcgtccca aggtccttct attactcggc aatgcagcc
//
LOCUS       DASWTX010000474         4241 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_5459, whole genome shotgun sequence.
ACCESSION   DASWTX010000474 DASWTX010000000
VERSION     DASWTX010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4241)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4241)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4241
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5459"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..211
                     /gene="rplW"
                     /locus_tag="VGD38_07290"
     CDS             <1..211
                     /gene="rplW"
                     /locus_tag="VGD38_07290"
                     /inference="COORDINATES: protein motif:HMM:NF004363.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEY0727853.1"
                     /translation="FRVDRRATKPEIKSAVETIFQVKVDHIRTINFMGKTARRGRYEG
                     RKPSWKKAYVTLKQGEKPVDYGEAI"
     gene            218..1048
                     /gene="rplB"
                     /locus_tag="VGD38_07295"
     CDS             218..1048
                     /gene="rplB"
                     /locus_tag="VGD38_07295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEY0727854.1"
                     /translation="MGIKKLTPTSAARRYQTYLTRDELTVGAVPEKSLLEPKKRISGR
                     NNDGRITVRRRGGGHKRFYRIVDFKRDKEGVPGRVTQIEYDPNRSAHIALITYLDGEK
                     RYIIAPTGLEVGKTIMAGAGADILPGNSLPLINIPLGTQIHNIELRPGKGGQMARSAG
                     TFAQLVAKEGEYAQLRMPSGEVRRVPLVCKATVGQVGNIEHENVSLGKAGRSRWKGLR
                     PKVRGVAMNPVDHPHGGGEGKTSGGRNPVTPWGQPTRGYKTRSNKRTQKMILKDRRTK
                     "
     gene            1048..1350
                     /gene="rpsS"
                     /locus_tag="VGD38_07300"
     CDS             1048..1350
                     /gene="rpsS"
                     /locus_tag="VGD38_07300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009001861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEY0727855.1"
                     /translation="MARSVKKGPFIDKGITKAVEKARAGGQRPPVIKTWSRRSTITPD
                     MVGLTFGVHNGKRHLPIYVTENMVGHKLGEFAPTRTFKGHSGTKVEKASKVAAPAK"
     gene            1380..1877
                     /gene="rplV"
                     /locus_tag="VGD38_07305"
     CDS             1380..1877
                     /gene="rplV"
                     /locus_tag="VGD38_07305"
                     /inference="COORDINATES: protein motif:HMM:NF012462.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEY0727856.1"
                     /translation="MEATASARYLRGSAQKARLVVDMIRGKDVNQALAILRFTKKRAA
                     GHIEKCMRSAIANANEAAEKANISIDPDDLWVRTAFVDRGPTKNRRRVRPAPQGRAYR
                     EQRHFCHVTISLSNDERPAPKASKEVKAAPAAEEKAKKPAASKSRKRGGAAAAPRAKR
                     KKTDE"
     gene            1920..2693
                     /gene="rpsC"
                     /locus_tag="VGD38_07310"
     CDS             1920..2693
                     /gene="rpsC"
                     /locus_tag="VGD38_07310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016654883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEY0727857.1"
                     /translation="MGQKVHPYGFRLGYNKDWHSHWFAKKQFGEFLLEDLKLKRDLKQ
                     RFAGAGVSHVDIERAANRLKIIIYTSRPGIIIGRKGAEIDKLKSDLSAKTGREVLVSI
                     QEIHKPELNAQLQAEKIAAQLEKRIAFRRAMRKAVEESLRFGAEGIKVKVSGRLNGAE
                     IARSEWHLQGQLPLHTLRADIDYGLAEAQTTFGQIGVKVWIYRGEIMDPKAAMARGTG
                     SDPINETRVGERERRPRTRREREERGQGSDGRRPRPENQ"
     gene            2713..3141
                     /gene="rplP"
                     /locus_tag="VGD38_07315"
     CDS             2713..3141
                     /gene="rplP"
                     /locus_tag="VGD38_07315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001829782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEY0727858.1"
                     /translation="MLMPKKVKHRKQMRGRMTGVATRGSEISFGEYGLKSLEPAWITD
                     RQIEAARIAMTRHIKRGGKIWIRMFPDKPVTKKPAETRMGKGKGAPEYWVAVVKPGRI
                     LYEIEGVDETTARDAMRLAAQKLPIKTKFVTRADQEGGAI"
     gene            3144..3350
                     /gene="rpmC"
                     /locus_tag="VGD38_07320"
     CDS             3144..3350
                     /gene="rpmC"
                     /locus_tag="VGD38_07320"
                     /inference="COORDINATES: protein motif:HMM:NF013027.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEY0727859.1"
                     /translation="MKKREELDKYREMPEDELRAEAARLRESLFRLNFKLALGEVDAV
                     KRIRQEKKSLARIQTLSRQRSESR"
     gene            3467..3691
                     /gene="rpsQ"
                     /locus_tag="VGD38_07325"
                     /pseudo
     CDS             3467..3691
                     /gene="rpsQ"
                     /locus_tag="VGD38_07325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011983253.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
     gene            3703..4071
                     /gene="rplN"
                     /locus_tag="VGD38_07330"
     CDS             3703..4071
                     /gene="rplN"
                     /locus_tag="VGD38_07330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002460061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEY0727860.1"
                     /translation="MIQMQTSLEVADNSGARRVEMIMPIGGSTGKIASLGDRIKVTVK
                     EASPDGTIKKGTVQDAVIVRTRKEVRRADGTYVRFDQNAAVLIKEDGTPIGTRVFGPV
                     ARELRDKNFMKIVSLAPEVI"
BASE COUNT         1033 a         1128 c         1380 g          700 t
ORIGIN      
        1 cttccgcgtc gatcgccgcg ccacgaagcc ggagatcaag tcggcagtgg agacgatctt
       61 ccaggtgaag gtcgaccaca tccgcacgat caatttcatg ggcaagaccg cgcgtcgcgg
      121 ccggtatgaa ggacgcaagc cttcatggaa gaaagcttac gtgactctga agcagggcga
      181 gaagccggtt gattacggcg aagcgatata aagaatcatg ggcatcaaga aactaacacc
      241 cacatcagca gcgcggcgtt accagactta cctgacgcgc gatgagttga cggttggcgc
      301 cgttcctgag aagtctctgc tcgagccgaa gaagcgaatc tcgggacgca acaacgatgg
      361 ccggatcact gttcgtcgtc gcggcggcgg tcacaagcgg ttttatcgca tcgtcgattt
      421 caagcgcgac aaggaaggcg tgcccggccg cgtgacgcag atcgaatacg atccgaatcg
      481 ttcggcgcac atcgctctga tcacgtatct cgacggcgag aagcgctaca tcatcgcgcc
      541 gacgggcttg gaagtcggca agacgatcat ggccggcgct ggcgccgaca ttcttcccgg
      601 caattcgctg ccgctgatca acattccgct cggcacgcag attcacaaca tcgaactgcg
      661 tcccggcaag ggcggccaga tggcgcgctc ggcgggaacg tttgcacagc tcgtggcgaa
      721 ggagggcgag tacgcgcaat tgcgtatgcc gtccggtgaa gtgcggcgcg tgccgttggt
      781 ctgcaaagcg acggtgggcc aggtcggcaa catcgagcac gaaaacgttt cgcttggtaa
      841 ggccggccgt tcgcgttgga aaggtttgcg gccgaaagtt cgcggcgtgg cgatgaaccc
      901 ggtggaccat ccgcacggcg gtggtgaagg taagacttcc ggcggccgta acccggtgac
      961 gccgtggggc cagccgacac gtggttacaa gacgcgcagc aacaagcgca cacagaagat
     1021 gatcctcaag gatcggagaa ccaagtaatg gctcgttcag ttaaaaaggg accgtttatt
     1081 gacaaaggaa tcacgaaggc ggtggagaag gcgcgcgccg gcgggcagcg tccgccggtg
     1141 atcaagacct ggtcgcgtcg ctccacgatc acgcctgaca tggtcgggct cacgttcggc
     1201 gtgcacaatg gcaaacgtca tttgccgatc tacgtgacgg aaaacatggt gggccacaag
     1261 ctcggcgagt ttgcgccgac gcgcacgttc aaaggccact cgggcacgaa agtagaaaag
     1321 gcgagcaagg tcgccgcgcc cgcgaaatag gccatagata acacgattag aggaacgcaa
     1381 tggaagcaac agcgagtgca agatatttac ggggttcggc gcagaaggcg cggctcgtcg
     1441 tggatatgat tcgcggcaag gacgttaacc aggcgctggc gattttgcga tttacgaaga
     1501 agcgcgctgc cggtcatatc gagaagtgca tgcgctcggc gatcgcgaac gccaacgagg
     1561 ctgccgagaa ggcaaacatc tcgatcgatc cggatgattt gtgggtgcgc acggcgtttg
     1621 tcgatcgtgg accaacgaag aatcgccgcc gtgtgcgtcc ggcgccgcag ggcagggcgt
     1681 atcgcgagca gcggcacttt tgtcacgtca cgatctcgtt gagtaacgac gagcgtcccg
     1741 cgccgaaggc gtcgaaggaa gttaaggctg cgccggctgc ggaagagaag gcgaagaagc
     1801 ctgcggcgag caagagccgg aaacgtggag gcgctgcggc cgctccgcgc gcgaaacgca
     1861 aaaagactga cgagtaggga aaagggattt tcaggaagga aatccgaaaa ggagtaaacg
     1921 tgggtcaaaa agttcatcca tacggttttc ggctcggcta caacaaagac tggcattcgc
     1981 attggtttgc gaagaaacag tttggcgagt tcctgctcga agacctgaaa ttgaaacggg
     2041 atctgaagca gcgcttcgcc ggcgccggcg tttcgcacgt cgacatcgaa cgcgccgcca
     2101 atcgcctgaa gatcatcatc tacacctcgc gaccgggaat catcatcggc cgcaagggcg
     2161 ctgagatcga caagctcaag agcgatctct cggcgaagac cgggcgcgaa gtgctcgttt
     2221 caatccagga gatccacaag ccggagttga acgctcaact ccaggccgag aaaatcgccg
     2281 cgcaactcga gaagcgcatc gcttttcgcc gcgcgatgag gaaagcggtt gaagagtcgc
     2341 tgcgtttcgg agccgaggga atcaaggtca aagtgagtgg ccgtttgaac ggagcggaaa
     2401 tcgcccgcag tgagtggcac ctgcagggac agttgccgct gcacacgctg cgcgccgaca
     2461 tcgactacgg tcttgccgaa gcgcagacca cgtttggaca gatcggcgtc aaggtttgga
     2521 tctaccgcgg cgagatcatg gacccgaaag cggcgatggc ccgcggtacc ggttccgatc
     2581 cgatcaatga aacgcgcgtc ggcgaacgtg aacgccgccc gcgtacccgc cgcgagcgcg
     2641 aagagcgtgg acagggatct gacggccgta gaccacggcc cgagaatcag tagaacaagg
     2701 atctaacgaa tcatgttgat gccgaagaaa gttaagcacc ggaagcagat gcgcggacgc
     2761 atgaccggcg tcgcgactcg tggcagcgag atcagcttcg gtgagtatgg gttgaagagt
     2821 ttagaacccg catggatcac cgatcgacag atcgaagcag cccgtatcgc gatgacgcgg
     2881 catatcaagc gcggcggcaa gatctggatt cgcatgtttc ccgataagcc ggtgacgaag
     2941 aagccggcgg aaactcgtat gggcaaaggc aagggcgcgc cggaatattg ggttgcagtt
     3001 gtcaaacccg gtcgcattct ctacgagatc gaaggcgtcg acgagacgac cgcacgcgac
     3061 gccatgcgtc tcgcagcaca gaagctgccg atcaagacga aatttgtgac ccgcgccgat
     3121 caggaaggag gcgcgatcta gcaatgaaga aacgagaaga actcgataag tatcgcgaga
     3181 tgcctgaaga cgaactgcgc gccgaagcag ctcgtttacg tgagtcgctc tttcggctca
     3241 atttcaaact ggcgttgggt gaagtcgacg ctgtgaaacg aattcggcag gaaaagaaat
     3301 ctttggcgcg catccagact ctttcgcgtc aacgttccga gagtagatag gtaaagagat
     3361 ggctgagaac gaagaaaaca tcgcgccaga gacgacgaac gcggaagcgc cacagagcga
     3421 agcggcgccg gccaagaagg gccgcgcgca tcgttcgcag aaagtcggca ctgtcgcttc
     3481 cgacaagatg acgaagacgg tgattgtccg cgtcgatcgt ttggtgcggc acaccaagta
     3541 ccggcgctac gtgcgtcgca cgtcgaagtt catggcgcac gacgagctcg gcgcgaccgt
     3601 gggcgataga gtgcgtatcg tcgagacgcg tccgctttca gcgcgcaagc gttggcgtgt
     3661 ggttgagata gtgcaaaaag ccgcgaagtg aggggttaaa caatgattca gatgcagacc
     3721 tcgttggagg ttgctgacaa ttcgggagcg cggcgcgtcg agatgatcat gcccatcggc
     3781 ggatccaccg gaaagatcgc cagcctcggt gaccggatca aagtgaccgt caaagaggct
     3841 tctcccgacg gcaccatcaa gaagggaacg gtccaggatg ccgtgatcgt gcgcacgcgc
     3901 aaggaagtgc gccgggctga cgggacttac gtgaggttcg atcagaacgc cgcggtgctg
     3961 atcaaggaag acggaacgcc gattgggacg cgcgtgtttg gaccagtggc gcgtgagctg
     4021 cgcgataaga acttcatgaa gatcgtttca ctcgcgccgg aggtcattta agagatggca
     4081 ggaacaaagc gctcgaaaat caagaagaac gatcaggtgg ccgtcattgc cggccgcgac
     4141 aagggccggc gtggccgcgt gctggaagtg aacccggtga agggcaaggt ccgggttgaa
     4201 ggcatcggga tgatcaagcg gcaccagaaa gccaatccgc a
//
LOCUS       DASWTX010000475         6236 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_290114, whole genome shotgun sequence.
ACCESSION   DASWTX010000475 DASWTX010000000
VERSION     DASWTX010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6236
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290114"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            274..561
                     /locus_tag="VGD38_07335"
     CDS             274..561
                     /locus_tag="VGD38_07335"
                     /inference="COORDINATES: protein motif:HMM:NF024845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HEY0727861.1"
                     /translation="MNCPVCSNVNLVMSERQGIEIDYCPQCRGVWLDRGELDKIIDKS
                     LAGSSGQRFDNDTRERSRDYRPSEYDREHHREGHYKKKKREGFLSDLFDFD"
     gene            717..1256
                     /locus_tag="VGD38_07340"
     CDS             717..1256
                     /locus_tag="VGD38_07340"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEY0727862.1"
                     /translation="MSQVTEGEERLLIEAAQNDPSRFAELYEQNFHRVYAYVARRVRD
                     RAEIQDLTAHVFQQALANLGKFKWKGSPFAAWLYRIAANAIADQAKRKMRESSDQANP
                     SAETSTTAVDLEEVERRARLFGAVDKLPEDQRRVIVMRFADEKSIREIAAELGRSEGA
                     VKQLQFRGLENLRNRLNEK"
     gene            1262..2284
                     /locus_tag="VGD38_07345"
     CDS             1262..2284
                     /locus_tag="VGD38_07345"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY0727863.1"
                     /translation="MAERSIIDQLDDAVAALAEGRQADLTNLAPELSALVEVAQGLVG
                     LPSEAFKAELQQQLIRRDVMSSPAEQQEFTEEQAAKDSYEDSVKEDKMRRENRRAVTP
                     YLTVHKPGELIDFVTEAFGAIEHFRATGSADGMHAEVSIGDSVIMIGGAEHIEPMPTA
                     IHLYVPNVDEAYERALKAGAKSLMPVADQPYGERSGGVEDIHGNRWYIATPFVPLQEI
                     AKDLHTVTVYFHPIGAQRFIEFVTNAFSGKELMRHAEGDMILHAKVQIGNSVIELGEA
                     RYETQPLPTAIYLYVDDVDTIYEQALNAGGVSMLAPTDQPYGDRNAWVKDPFANVWYI
                     AAPIKT"
     gene            complement(2286..2849)
                     /locus_tag="VGD38_07350"
     CDS             complement(2286..2849)
                     /locus_tag="VGD38_07350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727864.1"
                     /translation="MDLATLKAKLQEAGVVCEHGLTEGEIQLVQRSFGFQFPPDLKSF
                     LMYVLPSGKGWPNWRDVNDPEIERMLNWPYEGICFDFQNNSFWPTDWGTKPASLSDAF
                     EIAKGKVDAAPKLIPILGHRYLPARPLLEGNPVFSVYQTDIIYYGSNLWEYFQNEFHY
                     YFGVAEYQITAPPRRIEFWSDFVDDAY"
     gene            2909..3379
                     /locus_tag="VGD38_07355"
     CDS             2909..3379
                     /locus_tag="VGD38_07355"
                     /inference="COORDINATES: protein motif:HMM:NF013331.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II truncated hemoglobin"
                     /protein_id="HEY0727865.1"
                     /translation="MQTIYEAAGGLEGLLRLAHAWHGRVMEDEVVSHAFSHGFHPQHT
                     ERLAAYWAEALGGPTMYSDRYGDETSVVRIHSGNGPHEEMDQRAITCFDLALQDAGLD
                     RDERLRRVLHDYFAWATTTTMARYHDSADNVPHGLHIPKWSWDGLVSGADEVTG"
     gene            3490..3900
                     /locus_tag="VGD38_07360"
     CDS             3490..3900
                     /locus_tag="VGD38_07360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727866.1"
                     /translation="MSKPLKRKTPPEEHLKANTVLSVMTIIASFTLSFLLFFILGFKS
                     FTHPLIYATAGILLAIGGWHIQTLIRTQMLTKQWKRRAPLNGIQATPLEAPIASATTA
                     KLLAQPDFSDAIPASVTEHTTRHLAETPQANSRL"
     gene            complement(3913..4467)
                     /locus_tag="VGD38_07365"
     CDS             complement(3913..4467)
                     /locus_tag="VGD38_07365"
                     /inference="COORDINATES: protein motif:HMM:NF024812.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY0727867.1"
                     /translation="MDATTLPIITTPRLVLRWISEDDVDSLYAIFSDPRVMRYWSTVP
                     LPNREAAAELQREIAEHNKSERMFKWGLALRDSNTVIGTTTLFNLSLDNGRAEIGYAM
                     ASAHWGKGYMNEALKALVQHAFEVMDMRRLEADVDPRNAASIRTLERLGFQREGFLRE
                     RWHVNGEIQDAFFYGLLRREWRQD"
     gene            complement(4477..5094)
                     /locus_tag="VGD38_07370"
     CDS             complement(4477..5094)
                     /locus_tag="VGD38_07370"
                     /inference="COORDINATES: protein motif:HMM:NF013357.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 25 protein"
                     /protein_id="HEY0727868.1"
                     /translation="MSTNQLSGIDVSKWQGTVNWKSVQAAGVAFAFARATYGISVVDS
                     YFDTNWPAMKDAGIIRGAYHFFLATEDPTQQADFFIRTVGSLDPGDLPPVIDVESGSG
                     TSSNLAADVQTWLNAVEQGLGRKPVIYTAPSYWNANLTSGFGDYPLWVAEYGVSTPKA
                     VNGWSNWTFWQHSSTGSVSGVNGAVDLDYFNGTAQALAAFAGGSS"
     gene            complement(5105..>6236)
                     /locus_tag="VGD38_07375"
     CDS             complement(5105..>6236)
                     /locus_tag="VGD38_07375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727869.1"
                     /translation="SEVDIKEAVKSSINSVPYIAKINPLTMQVTQVDLTEGSTINYTG
                     GLLMHENGFVYGVSRSYLYKVDPETMRIVASAPLPLVGDSKDENFWTTYNGMQVIASG
                     ELVIKGFYFLNSVSVNGWLLLVNPDTLEIDVQQSEALSSARLTIQQAADGSATLYQVN
                     ATQSLRFKITDTEFLLEDDWTRTYRTADDGTTQASSPLLFGKVGQIVFADNTAPGATT
                     PINLYDQPVNVADLPATLDGINAFDSDLPGFNFFMVAGDPFETQTLVYYDPINNLLGA
                     HTVLSDGTLQRLWEINDVYKVSASPAIVPDRDLLYIDNYQNGTDSFVVLRLSTGEELA
                     SVPLSANLPTIGTIFLGMNEDVYILSSEAGTNNGLVSRIFLK"
BASE COUNT         1491 a         1711 c         1705 g         1329 t
ORIGIN      
        1 attcagaagt ggagagtgtt agtaaggcca gtgatggcgt gtccacaaag acgtggttga
       61 tcattagtgg cgtcgccgcg ggcgtcatta ctacctggct ggttgtaaaa cccgccgttt
      121 gtgatggcgg cgcacaaaca cgtggggttt gctaacgagg tttcgcaccg aagattggcc
      181 cccgcggcga tctacggctt tactgcttca cgtctccagt attctgtgac aaactgatgc
      241 tacacgtaga caaaccatac tcgggagaac tgcatgaatt gtccagtttg ttcgaatgtc
      301 aatctggtga tgtcggagcg acaaggtatt gagattgatt actgtccgca atgtcgaggt
      361 gtctggttgg acaggggtga gttggataag atcatcgaca aatctctcgc cggctcatca
      421 ggccaaagat ttgataacga cacccgcgag cgctcgcgcg actacagacc ctctgagtac
      481 gatcgcgaac accaccgcga aggtcactac aaaaagaaaa aacgagaagg ctttttgtca
      541 gacctcttcg atttcgacta aaactgcaac actgtccaat cactagagca cgccgtggtt
      601 tacccgtacg ggtaaactca attagactcc gcccggaaca gacgcaaaaa caccgtaact
      661 ttccccccgc tccgcagttt taataacaga aaccggcgtt gcgaggactg gttgacttga
      721 gtcaggtaac tgaaggcgaa gaacggctcc tgatcgaagc tgctcagaat gacccgagcc
      781 gctttgccga gctgtacgaa cagaatttcc accgcgtgta tgcctacgtc gcgcggcgtg
      841 ttcgcgatcg tgccgaaatt caggatctta ccgcccacgt cttccaacaa gcactcgcaa
      901 acctcggaaa gttcaagtgg aaaggctcgc ccttcgccgc gtggctctat cgaatagccg
      961 caaacgcgat tgccgatcag gcgaaacgca aaatgcgcga gtcgagcgat caggcgaatc
     1021 cgtctgctga aacttcaacc accgccgttg atctcgaaga agtcgaacgc cgcgctcgtt
     1081 tgtttggcgc ggtcgacaaa ctccccgagg atcaacgtcg cgtgatcgtg atgcgtttcg
     1141 ctgacgaaaa gagtattcgc gaaattgccg cggagttggg acgcagtgaa ggagccgtca
     1201 aacaacttca gtttcgcgga ctggagaatt tgcgtaatcg actaaacgag aagtaacacc
     1261 aatggccgaa cgctcaatca tcgatcaact ggacgacgcc gtcgccgcgc tggctgaagg
     1321 gcgtcaagcg gatctgacga atctcgcgcc ggagttgtcc gcgctcgtcg aggtcgcgca
     1381 gggtcttgtt ggtctgccaa gcgaggcgtt caaggctgaa ctacaacagc agttgataag
     1441 gagagacgtt atgagcagtc ccgcagaaca gcaagagttt accgaagaac aggcggcaaa
     1501 agattcatac gaagattcag tgaaagaaga caagatgagg cgcgaaaacc ggcgcgccgt
     1561 cacgccttac ctgaccgttc ataagcctgg cgaactaatc gatttcgtga ccgaagcatt
     1621 cggcgcgatc gaacatttcc gcgcaacggg ttctgcggat ggaatgcatg cggaagtatc
     1681 gatcggcgat tcggttatca tgatcggcgg cgccgagcat atcgaaccga tgccgaccgc
     1741 tatacatctc tacgtgccga acgtcgatga agcgtatgaa cgtgcgctca aagccggcgc
     1801 gaagtctctc atgccggtgg ctgatcaacc atacggcgaa cgttcgggtg gtgttgaaga
     1861 catccacggc aatcgctggt acatcgcgac gcccttcgtg ccactgcagg aaatcgcgaa
     1921 ggacttgcac accgtcacgg tctacttcca tccgatcggc gcgcaacgtt ttatcgagtt
     1981 cgtgacaaac gcattcagcg gcaaagaatt gatgcgccac gcagagggcg acatgattct
     2041 gcacgcaaag gtgcaaatcg gaaactcggt gatcgagctg ggcgaggctc gctacgaaac
     2101 acaaccgttg ccaacggcga tctatctgta cgttgacgac gtggacacga tttacgaaca
     2161 ggcgttgaac gcaggaggcg tctcgatgct cgcgccaacc gatcaaccct acggcgatcg
     2221 aaacgcatgg gtaaaggatc cgtttgcgaa cgtgtggtac atagcagctc cgatcaagac
     2281 ctaagtcagt aggcgtcgtc gacaaaatcg gaccaaaact ctattcgtcg aggtggagca
     2341 gtaatctggt attcggcgac gccaaagtaa tagtgaaact cattctgaaa gtattcccaa
     2401 agattcgagc cgtagtaaat gatgtctgtc tgataaaccg aaaaaaccgg attgccttct
     2461 aacaacgggc gggcgggcaa ataacgatga ccgagaatcg gaattagttt aggagctgca
     2521 tcaaccttcc ctttcgcgat ttcaaaagcg tccgacagtg acgccggctt ggttccccaa
     2581 tcggtgggcc agaatgagtt gttttgaaag tcgaagcaaa tgccttcgta cggccaattc
     2641 aacattcgtt cgatctccgg atcgttaaca tcgcgccagt tgggccagcc ctttccactc
     2701 ggcaatacgt acatcagaaa cgacttcaag tcgggcggga attggaaacc aaatgaacgc
     2761 tgtactaact gaatttcgcc ctccgtcaaa ccgtgttcac acacaacacc ggcttcttgt
     2821 aacttcgctt tgagtgtggc gagatccatc aacttcgtct ccttcgtttg ttaaaatgcc
     2881 acagaattcg ggaatggaca cgaaaactat gcaaaccatc tatgaagccg cgggtggtct
     2941 ggaggggttg ttaaggttgg cccatgcgtg gcacgggcgg gtgatggagg atgaggtggt
     3001 tagccatgcg ttcagccatg gattccaccc gcagcacacc gagcgcttgg cggcgtactg
     3061 ggcggaggca ctcggtggac caacaatgta ctccgaccgg tacggtgatg agacgtctgt
     3121 cgtgcggatt catagcggca acgggccgca cgaggagatg gaccagcgag cgatcacctg
     3181 tttcgatctg gcactgcaag atgccggact cgaccgcgac gagcgtctca gacgcgtgct
     3241 tcacgattac ttcgcgtggg caaccacgac cacgatggcg cgttaccacg actcggcgga
     3301 caatgtgccg catggcttgc acattccgaa gtggtcatgg gacggactcg tcagtggcgc
     3361 ggacgaagtc acggggtaaa cttttccagc gggattaccg tttcatacgt tatgtattgt
     3421 ccacgatgcg gaaaagctga ccagacgccg gaaacttact gccgccaatg cgggcttttt
     3481 ctgccggatt tgtccaagcc gctcaaacgt aaaactccgc ccgaagaaca tctcaaagcc
     3541 aacaccgtcc tgagcgtcat gacgataatc gcgagcttta cgctatcgtt tctgctcttt
     3601 ttcatactgg gattcaagtc gtttacgcat cctctaatct acgcgaccgc cggcatcttg
     3661 ttagccatcg gcggttggca cattcagacg ctgatcagaa cccaaatgct cacgaaacag
     3721 tggaaacgaa gagctccact aaacggaatc caggcaacgc cactcgaggc gccgatcgct
     3781 tccgcaacaa cggcaaagct gttggcccag ccggacttct ctgacgcgat cccggcgagc
     3841 gtgacggaac acaccaccag acacctggcc gaaacacctc aagctaattc acgattgtaa
     3901 actcgagccg gattaatcct gccgccactc gcggcgcagt aatccataga agaacgcgtc
     3961 ctgaatttcg ccgttcacgt gccaacgctc acgaagaaag ccttctcgct gaaaacccaa
     4021 tctctccagc gtgcggatcg aagcagcatt gcgcggatcg acgtcggctt cgagacggcg
     4081 catgtccatc acttcaaagg cgtgttggac caacgccttt agggcttcgt tcatgtagcc
     4141 tttgccccag tgagcactgg ccattgcgta accgatctcg gcgcggccgt tgtcgaggct
     4201 gagattgaag agcgtcgtgg tgccgatgac ggtgttcgag tcgcgcagag cgagtcccca
     4261 cttgaacatt cgttcgctct tgttgtgttc ggcaatctcg cgctgcagtt ctgccgcggc
     4321 ttctcgattc ggaagtggaa cggtgctcca gtaacgcatc acccgcggat cggaaaagat
     4381 cgcgtagaga ctgtcgacgt cgtcttcgga aatccaacga agaaccaggc gtggagtggt
     4441 gatgatcggg agtgtcgtcg catccatgtc gtaagtttac gacgaaccgc cggcaaacgc
     4501 cgcgagagct tgcgcggtgc cgttgaagta atccagatcg acggcgccat tcacgccact
     4561 gacgcttccg gttgaggaat gctgccagaa ggtccagttg gaccaaccgt tcaccgcttt
     4621 cggagtcgac acgccgtact ccgcaaccca aagcgggtaa tctccaaacc cactcgtcag
     4681 gttcgcgttc cagtacgaag gcgcggtgta gattacaggt ttgcgtccca agccttgctc
     4741 gacagcgttg agccacgtct gcacatcggc agcgagatta ctgctcgtgc cactgccact
     4801 ctccacgtct atcaccggcg gcagatcgcc gggatctaga ctaccgaccg tgcgtataaa
     4861 aaaatcggcc tgttgggtgg gatcttctgt cgcgagaaag aagtgatacg ccccacgaat
     4921 aatgcccgca tccttcatcg ccggccagtt agtgtcgaag tacgaatcca caaccgaaat
     4981 gccgtaggtc gccctggcga aagcgaacgc aacacccgcc gcttgcacgc tcttccaatt
     5041 cacagttccc tgccatttag aaacgtctat gcctgagagt tgatttgtcg acattgactg
     5101 cctcctattt taagaatatc cggctgacca atccgttgtt ggtgcccgct tcgctgctca
     5161 ggatgtacac gtcttcattc atgccgagga agatcgtgcc gatcgtgggc aggttcgcgg
     5221 acagcggaac actcgccagt tcctcaccag tagaaagcct taacacaacg aacgaatcgg
     5281 tgccgttctg gtaattgtcg atgtagagca gatcgcgatc cggcacgatg gctggtgaag
     5341 cgctgacttt atagacatcg ttgatttccc acaagcgttg cagcgtgccg tcggacaaaa
     5401 cggtgtgcgc gccgagtaga ttattaatcg gatcgtagta aacgagtgtc tgagtctcaa
     5461 acggatcgcc ggcgaccatg aaaaagttaa agcccggaag gtcgctgtcg aaagcattga
     5521 tgccgtcgag cgtcgctggc agatcggcga cgttcacggg ttggtcgtaa agattgatcg
     5581 gcgtggtggc gccgggcgcg gtgttgtcgg caaaaacgat ctggccgact ttgccgaaca
     5641 acagcggtga actcgcttgc gttgtgccgt catctgccgt gcgataagtg cgcgtccaat
     5701 cgtcctcgag caaaaactcg gtgtcggtaa tcttgaaacg tagtgattgc gtggcgttga
     5761 cctggtacaa cgtggccgat ccgtccgcag cctgctggat cgtcagtcgc gccgatgaaa
     5821 gcgcctccga ttgctggaca tcgatttcca acgtgtcggg gttcaccagc agcagccatc
     5881 cgttaacaga aacgctgttg agaaagtaga aacccttgat caccagctca ccggacgcga
     5941 tcacctgcat gccgttatag gtggtccaaa aattctcgtc cttgctgtcg ccgaccagcg
     6001 gcagcggcgc gctcgcgacg atccgcatcg tttccggatc gactttgtaa aggtaagagc
     6061 gcgacacgcc gtacacgaat ccgttctcgt gcatcaacaa cccgccggtg taattgatcg
     6121 tactgccctc ggtaagatcc acttgcgtca cctgcatcgt cagcggattg atcttcgcga
     6181 tgtacggcac cgaattgatg ctcgatttaa ctgcttcttt gatgtctact tcgctc
//
LOCUS       DASWTX010000476         3299 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_266125, whole genome shotgun sequence.
ACCESSION   DASWTX010000476 DASWTX010000000
VERSION     DASWTX010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3299
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266125"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2258)
                     /locus_tag="VGD38_07380"
     CDS             complement(<1..2258)
                     /locus_tag="VGD38_07380"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEY0727870.1"
                     /translation="MRKTILSLLLSLFIVSVARAALPSGFVETQVTGLSNATAFAVHP
                     DGRIFVCQQSGELRVIKNGAVLPTPFTTLTVNSVGERGLLGVAFDPNYATNRFVYVYY
                     TATTPTVHNRVSRFTANASNEDVAVAGSELVILDLESLSATNHNGGAIHFGPDGKLYI
                     AVGENAVPSNSQSLSNRLGKILRINSDGTIPSDNPTSFPNIAGSPAGNNRAIWAVGLR
                     NPFTFSFQPGTGRMHINDVGQGTWEEVNVGTAGANFGWPTCEGTCGTSGMTNPLYQYS
                     SAVAAPCAITGGAFYNPTTPTFPAQFIGKYFFADFCAGWIKTLDPLNPPATGAAVDFA
                     TGLNLPVDIQVANDGSLYYLARGSNSVFRVQFAGGGSTLAINDLNITEGASGTSVANF
                     TVSLSASSSQTVTVNYATANNSAVAGSDYVATSGTVTFTPGQVSRTISVTINGDTTFE
                     PNETFFVNLSNASNATIDDNQGVGTIVNDDAQPSISINNVSVTEGNTGTTTASFTVSL
                     SNPSSQNVSVNYATAGNTATSGNDFVAASGTATIAAGQLSTTINVTVNSDTIFEANET
                     FFVNLTTPTNATIGDNQSVGTINDDDSQPTISINDLSINEGNSGTTNATFTVSLSNAS
                     SQTITVNFATANNTATAGDDYTSATGTVTFTAGQTSRSISVGINGDVFNEDNVSFNVN
                     LTSPTNATITDSQAVGTIVDDDAPVLATELNSQRAIALDTVVFIRDPFPITNEQYPGT
                     DKRTRVALFATNL"
     gene            2444..3145
                     /locus_tag="VGD38_07385"
     CDS             2444..3145
                     /locus_tag="VGD38_07385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727871.1"
                     /translation="MSSFRKPLPFVMLVLLILLAIAFARSGNTQALKNQRKDESQELV
                     TAVRRGGLKEAARLKKNYVGTERTSGWAKLDLENLVRNSSTIIVGTPLISAPRLSDSG
                     EQVLTDHNVRVEQTLRGDMKPNQVITLTVVGGKVTFEDGTTAEIRTPDLSPIETGKTY
                     VLFLRNRQNAAPDSFNLKGGGQGLFEITSDSTIEPRGDKVDPVRKYKHAPVTAFVEEI
                     KANVKKHPDNSRCCK"
BASE COUNT          728 a          850 c          943 g          778 t
ORIGIN      
        1 aggttggtgg cgaagagcgc aacgcgggtg cgtttgtctg ttccggggta ttgctcgttt
       61 gtgatcggga atgggtcacg gataaacacg acagtgtcga gtgcgatcgc gcgctgtgaa
      121 ttgagttcgg tagcgagcac cggagcgtcg tcgtcgacga tcgttccgac agcctggctg
      181 tcggtgatcg tggcgttggt tggcgacgtt aggtttacgt tgaacgacac gttgtcttcg
      241 ttgaaaacgt cgccgttgat gccgacgctg atcgatcgtg aagtctgtcc ggctgtgaac
      301 gtcaccgtgc cggttgcgct tgtgtaatcg tcgccggcgg tcgcagtgtt gttggcggta
      361 gcgaagttta cggtgatcgt ctggctgctc gcgtttgaca atgaaaccgt gaacgtggcg
      421 tttgtcgtgc cagagttgcc ttcgtttatc gacaggtcgt tgatcgagat cgttggttgc
      481 gagtcgtcgt cgttgatcgt gccgacgctc tggttgtcgc cgatggttgc gttggtcggg
      541 gtcgtgagat ttacgaagaa ggtctcgttg gcttcgaaga tcgtgtctga gttgacggtt
      601 acgttaatcg tcgtggagag ctgtcctgct gcgatcgttg cggtgccact ggccgctacg
      661 aaatcgttgc ctgaagtcgc ggtgttcccg gcggtcgcgt agttgactga aacattctga
      721 ctactcgggt tcgacaaaga aaccgtgaac gatgccgttg tcgttccagt gttgccttca
      781 gtcaccgaaa cgttattgat ggagatcgac ggttgcgcat cgtcgttgac gatcgtgcca
      841 acgccctggt tgtcgtcgat cgtggcgtta ctcgcgtttg atagattgac gaagaaagtc
      901 tcattcggtt cgaacgtcgt atcgccattt atggtgacgc tgattgttcg agacacttgt
      961 cccggcgtga aagtcacagt gccgctcgtc gcgacatagt cactgccggc gacggcagag
     1021 ttgttcgcgg ttgcatagtt caccgtcacc gtttgcgaac tcgacgccga cagcgacacc
     1081 gtaaagtttg cgactgacgt tccgctggcg ccctcggtga tgttcaaatc atttatcgcc
     1141 agtgtcgaac caccacctgc aaactgcaca cgaaacacgg aattgctccc gcgcgcgagg
     1201 taataaagac tgccgtcatt cgcgacctga atatcaaccg gcagattgag cccggtcgca
     1261 aaatccaccg cggcgccggt tgccggtgga ttcagcggat cgagagtctt tatccacccg
     1321 gcacagaagt cagcaaagaa atacttcccg ataaactgcg cgggaaacgt cggcgtcgtt
     1381 gggttgtaga aagcgccgcc cgtgatcgca cacggcgcgg cgaccgcgga agaatactga
     1441 tagagcggat tcgtcatgcc tgaggtgccg cacgttccct cacaagtcgg ccagccgaaa
     1501 tttgctcccg ctgttccgac attcacttct tcccatgtgc cttgtccgac gtcgttgatg
     1561 tgcatgcgac cggtgcccgg ttgaaaactg aacgtgaacg gattgcgaag cccgaccgcc
     1621 cagatcgcgc gattgttacc ggccggcgag ccggcgatgt ttggaaaact cgtggggtta
     1681 tccgatggaa tcgtgccgtc tgaattgatt cgcagtatct tgccgagacg gtttgatagc
     1741 gactgtgagt tcgacggcac ggcattctcg ccgactgcga tgtagagctt gccgtcgggc
     1801 ccgaagtgta tcgcgcctcc attgtggttg gtggcgctga gagactccaa gtcgagaatg
     1861 accagttcgc tgcctgcgac agctacgtct tcgttggaag cgtttgcggt gaaacggctg
     1921 acgcgattgt gaaccgtcgg cgttgttgcc gtgtagtaaa catagacgaa gcgattcgtc
     1981 gcatagttcg ggtcaaacgc cacgccgagc agaccgcgtt caccaacgga gttgacggtg
     2041 agtgttgtaa aaggcgtagg tagtacggcg ccattcttaa tgacacgcag ctcgccgctc
     2101 tgttggcaca caaagatgcg tccatccgga tgcacggcga acgcggtcgc gtttgaaagc
     2161 cccgtgacct gcgtttcgac aaaaccactc ggcagcgccg ccctggcgac actaacgata
     2221 aagagagaca gcaacaggct caggattgtt tttcgcatga caaatctaat tggggggaac
     2281 tgcaggagga gctgacagtt tagtcagccg cggggactaa aggcaacata ctttttggtg
     2341 aggtacgtga catgaacccc ctccctgttg ccacagtgcg catccttgcc tcaaagtatg
     2401 agtcgtgaga cgctctcacg taatgtcctc aaaggagtag cagatgtcat cttttcgcaa
     2461 gcctctaccg tttgtgatgt tagttctgtt gatccttctc gcaattgcgt tcgctagaag
     2521 cggaaataca caagccctca aaaaccaacg gaaagacgaa tcacaggaac ttgtcacggc
     2581 ggtacgccgt ggtggcttaa aggaagcggc tcgactcaag aaaaactacg tcggtaccga
     2641 gcgaaccagt ggttgggcca agctggatct cgagaacctc gtgaggaata gctcaaccat
     2701 tattgttggc actccgctaa taagtgcccc cagattatcg gactccggcg agcaggttct
     2761 caccgatcat aatgtccgag ttgaacaaac tctcagagga gatatgaaac ctaaccaggt
     2821 tattacgctc acggtggttg gcggcaaagt tacgttcgaa gatggtacta ccgcagaaat
     2881 tcgaacaccg gacctgagtc cgatagaaac cggcaagacc tacgtcctgt ttttgaggaa
     2941 tcgacaaaat gctgctcctg atagcttcaa ccttaaaggc ggtggacaag gtcttttcga
     3001 aatcacttcc gactcaacaa tcgaacctcg cggtgacaaa gtcgacccag tgcgaaaata
     3061 taaacacgcg ccggtaacgg ccttcgttga agaaatcaaa gcaaatgtaa agaagcaccc
     3121 ggacaattca cggtgctgta aatagtgtcc tgtaaaccac gctttcaagc gtccctcaag
     3181 gagctatcgg tgtgttcgct cattccgctg ttactaacgt catctgcgcc tcattcatcc
     3241 tcattgccgc cctggcaata tcgatttatg ccattaactg catgccagct aatgacatc
//
LOCUS       DASWTX010000477         6171 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_244066, whole genome shotgun sequence.
ACCESSION   DASWTX010000477 DASWTX010000000
VERSION     DASWTX010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6171
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244066"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..977)
                     /locus_tag="VGD38_07390"
     CDS             complement(<1..977)
                     /locus_tag="VGD38_07390"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEY0727872.1"
                     /translation="MAQTDDLLARRRSELASRRAALSALKQQELERLLNKTAAGQTPA
                     PVIPKRPATGPAPLSFAQERLWFLDQLEPDSVAYNVCIPLRLTGRLNVAALNQSINEA
                     ARRHESLRTTFIEHEGRPAQVIASPQHHELEVVDLSLLPEMERANVARQLVHEGHRRR
                     FNLPQGPLFQSTLLRLGAEEHVLLVLLHHIVFDDWSMQILVHDVGENYQSFEQGVASS
                     LPELSIQYADFAHWHRDQLRDEVLEQELSYWRTQLEDSPPIMNLPTDRPRPAVMTYDG
                     DAVRFTVPEELTEKLRSLTRSTGSSFFMTLLASFQMLLSRYTGQDDVVVA"
     gene            complement(991..1779)
                     /locus_tag="VGD38_07395"
     CDS             complement(991..1779)
                     /locus_tag="VGD38_07395"
                     /inference="COORDINATES: protein motif:HMM:NF026098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase dimerization
                     domain-containing protein"
                     /protein_id="HEY0727873.1"
                     /translation="MDVKPRLGVLGAGRLAEGIAKTWFARTGQAPLVWSRSGPRDGRI
                     PEARWVTEWTEALEAQSVAIAIPGRALLGLAQRNEQARQFTGNVFSAAASLSRASLAQ
                     VFPQATIVCIAPFLIDGVNSIPMLVLRSSELADSAWAKAKAELDTFGDCDVIEDETAY
                     GQLSLLGASWPSVVLAAVQAAAGAGVQRLPDDDAIKLGKRIFFRALHSLLATRAQQPE
                     QESPNEIATPGGITERGFKSLGDTSSLFESVFKQMQARAEELRA"
     gene            complement(1770..2627)
                     /locus_tag="VGD38_07400"
     CDS             complement(1770..2627)
                     /locus_tag="VGD38_07400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727874.1"
                     /translation="MLTTTTRRITGASLPAEAFRVHKTTGPIDVSLVVDVLRGRLAAY
                     HVEGFVPLDTCRRIMLNFWESSGRTPRYGAGEDGVEAYLVGASHYGKPTMTYLEEALA
                     CREHVEGLYADVINPVAQFRETIGAESGLTVRAASLNGLPAGDSKGVYWNNVGTFLLE
                     PHDDLAQVKDPIQSDFEIQQVNRVMAVNVYAAVPQGSGQLRVWNIEPDNETLEDLGLS
                     GVGFPYPPELLEEFPSTTIAVGTGDLCVINGNLIHAVVRGNTATPKNRLLLTCFMGLN
                     FQNELIWWT"
     gene            complement(2631..3635)
                     /locus_tag="VGD38_07405"
     CDS             complement(2631..3635)
                     /locus_tag="VGD38_07405"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HEY0727875.1"
                     /translation="MRIWKYSYLDAIMLALSVGQFVTTLLLSIFWERASALTRAAGFV
                     LLVVMMVYNIIVVSHLFTHTAWFRSPWLNRLVSLLNSINIGQSVQAYELTHVRNHHRY
                     NNDQQRPDGKTHDLSSTFRDGARGEHVSAFRYAFLGAIETFGGVARAHLSITRLWRVG
                     PHEHDLLRLVAKSAAKRNWELRQLQLDRMAHFFAHCLFLAISWQWFLFCYLPAFFIAL
                     ALVNVQNYFEHYGAAPENRYANSVSYYGRLYNLLTFNDGYHQEHHLRPLTHWTQMPRV
                     RREYREKLEQVERIVSPVPAILGALHRNRRLLHRNGTAAVPSVSQSASNTLSKAAAGR
                     "
     gene            complement(3632..4744)
                     /locus_tag="VGD38_07410"
     CDS             complement(3632..4744)
                     /locus_tag="VGD38_07410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727876.1"
                     /translation="MRATTAPSLDTTASPVSSYNEWDLLEEVIVGVVDGANFPPSHIS
                     VEAPLPHSQRQTFRDNAGRPFPAEQIALARQELEEFVHILEEEGVKVRRPTPIDQTRE
                     YGAPGWTSTGLYDAMPRDVLLVVGDEIIECPLSWRSRHYGTAAFKPLLKEYFKNGAKW
                     SAAPNPELRDELYDYEWTEPQDGEAVRYVITEFEPTFDAADFMRFGRDIVAQKSNVTN
                     EFGIEWLRRHLGETYRIHVFEFADSHPMHIDATLVPLAPGKLLINPERVPKVPSIFRG
                     WEIFHAPQPIIPDDHTLYMTSKWINMNILSLDEKRIMVERQDEPMIAALKEWGFKPIP
                     CNFRNFNTFGGSFHCATLDVRRRGKLQSYLLDGAGL"
     gene            complement(4766..>6171)
                     /locus_tag="VGD38_07415"
     CDS             complement(4766..>6171)
                     /locus_tag="VGD38_07415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727877.1"
                     /translation="PGDLNKEWLKLYAEAKSALSNGDPETAEKLAHKMIEIDQGVCNA
                     PYHLVAQCRRLANDRAGEKKYRELARDSQSWDSSMTYIPKSYCLTQQIMREVMAEYGQ
                     QVVDLPALFDEYLNGEVPGRQVFVDYCHLTTEGMQVAMGAAASCVLRSLKGVDIPWYA
                     LVDDEIAPSPQIEAEASFLAAIHDAHRWQSYDVTRHYCERALKNSPHVAEMMLSYLDL
                     QTQRSAPLRMSEAEEKIFHLGSPLIHRYLFRNNNKRLDKTLLGAMVDVLEDAGYKCRE
                     RLEQLRREEHSVRHSETDLLHFYYYSTAEQPQELEALNWPNYRLATDVRYFRAFWPES
                     RFMFVAEAGYPVKISLTCRLPKPAPREEKITIALNGEPQAELTITTDWSTWDVTLPGE
                     VMRDGINEVAVRWPIPEFRSAEALSRVTARLCQQKFPEFFAVFGEIHTITASNGEPET
                     APLPIEVQAESSLVEIA"
BASE COUNT         1289 a         1755 c         1781 g         1346 t
ORIGIN      
        1 gcgacgacca cgtcatcctg gccggtgtac cgggacagca gcatctgaaa cgatgccagc
       61 agtgtcatga agaacgagct tccggtagag cgagtcaggc ttctcagttt ttccgtcaac
      121 tcctccggca ccgtgaatcg caccgcgtcg ccgtcgtagg tcatgacagc cggacgcgga
      181 cgatccgtag gcaggttcat tatcggcgga ctgtcttcca actgcgtgcg ccagtaagag
      241 agttcctgtt cgagcacttc gtcgcggagc tggtcgcgat gccagtgagc aaagtccgcg
      301 tattgaattg acagctccgg tagtgatgag gcgacgccct gttcgaagga ctggtaattc
      361 tcgcccacgt cgtggacgag gatctgcatg gaccaatcgt caaacacgat gtgatgcagg
      421 agcaccagca aaacatgctc ttccgcgccc agacgaagca gggtcgattg gaaaagcggg
      481 ccctggggca ggttgaaacg ccgccgatgt ccctcgtgga ccaactgccg cgcaacgttt
      541 gctcgttcca tctccggcag caaagaaaga tcgacgactt ccagttcatg atgctgcggt
      601 gacgcaatta cctgagccgg tcttccctcg tgctcgatga aagtagtcct cagagattca
      661 tgacgccggg cggcttcatt gatgctttgg ttcagggccg ccacgttgag ccggccggtc
      721 agacgcaaag ggatacaaac gttgtaagcg acactgtcag gttccaactg atcgaggaac
      781 cacaatcgct cctgcgcgaa agacagaggc gcggggccgg tggccggccg cttgggaatc
      841 actggcgccg gcgtttgtcc ggccgcggtt ttattcagga gtcgttcgag ctcttgttgc
      901 ttcagagccg acagcgctgc gcggcgggac gcgagttcgg atcttcggcg tgcaagtaag
      961 tcgtctgttt gtgccatgtg tcttccctga ttaggctcgt aattcttcag cgcgtgcttg
     1021 catctgtttg aatacagact caaagaggct gcttgtgtct ccgaggcttt tgaatccgcg
     1081 ttcggtgatt ccgccgggag tagcgatctc gtttggggat tcctgttccg gctgttgcgc
     1141 gcgcgtcgct agaagtgagt gaagagctct gaaaaagatt cgttttccta atttaattgc
     1201 gtcgtcgtcc ggcaatcgtt gcacgccggc gcctgccgca gcctgtacgg cagcgaggac
     1261 aactgagggc cacgaagcgc caagcaacga gagttgaccg taagccgttt catcttcaat
     1321 aacgtcgcaa tcaccgaagg tatcaagttc tgctttggct tttgcccatg ccgaatcagc
     1381 aagttctgaa gaacgcaaga caagcatcgg aatggagttc acaccgtcga tcaaaaaggg
     1441 cgcgatacac acgatcgttg cctgcggaaa tacctgcgcg agcgaggcgc gggaaagcga
     1501 agcggccgcg ctgaaaacgt tcccggtgaa ttgccgcgct tgctcgtttc tctgcgccag
     1561 accgagcaat gctcttcccg gaatcgcgat cgcaactgat tgcgcttcga gcgcttcggt
     1621 ccattccgtg acccacctgg cctcgggaat tctgccgtcg cgtggtccgc tccggctcca
     1681 aaccagagga gcctgaccgg tccgcgcgaa ccacgttttt gcgatgcctt cggcgagacg
     1741 gcctgcgccc aacacaccga gacggggttt cacgtccacc agatcaactc gttttgaaag
     1801 ttcaggccca tgaagcacgt gagtagcagc cggttcttcg gcgtcgctgt gtttccacgc
     1861 acgaccgcat ggatcaggtt gccattgatg acacaaaggt caccggtccc gacggcaatc
     1921 gtcgtcgacg gaaactcctc cagcagctca ggtggatacg gaaatccgac gccactcaac
     1981 ccgagatcct cgagcgtttc gttatccggc tcgatgttcc aaacacgaag ctggcccgag
     2041 ccctgtggca ccgccgcgta aacgttgacg gccatcaccc tgtttacctg ctgaatttca
     2101 aaatcagact ggatcggatc cttcacttgc gcgagatcgt cgtgcggctc gagcaggaac
     2161 gtgcccacgt tgttccagta cacgcctttc gaatcaccag ccggcaatcc attgaggctg
     2221 gcggcgcgaa cggtcaaccc gctttcggcg ccgattgttt ccctgaactg tgcgaccggg
     2281 ttgataacgt cagcgtacaa gccttcgacg tgctccctgc aagcaagcgc ttcttcgaga
     2341 tacgtcatcg tcggtttgcc gtaatgcgaa gcgccgacca gatacgcctc gacgccgtct
     2401 tcgcctgcac cgtaacgcgg ggtccttccg gatgactccc agaaattcag catgattcgc
     2461 cggcaggtat cgagtggtac aaatccttca acgtgatagg ccgcgagtct tccgcggaga
     2521 acgtcaacga ccagcgacac atcgatcggt ccggttgttt tatgtacgcg aaacgcttct
     2581 gctggtaacg aagcgccggt gatgcggcgt gtggtagtcg tcaacatgat tcatcgtccg
     2641 gccgcggctt ttgagagcgt gttggaagcg gattgcgaga ctgacggaac tgctgccgtg
     2701 ccgttccggt gaagtaaccg gcgattgcga tgtaaggcgc cgaggatcgc cggcaccgga
     2761 ctgacgattc gttcaacctg ctccagtttt tcgcggtact cacgtctcac gcgcggcatc
     2821 tgcgtccaat gggtcaacgg ccgcagatga tgttcctggt gataaccatc gttgaaagtc
     2881 agcaggttgt agagcctgcc gtaataacta accgagttgg cgtaacgatt ctccggcgcc
     2941 gcgccgtagt gttcgaagta gttctgaacg ttgaccagcg ccaatgcgat aaagaacgcc
     3001 ggcaggtagc agaacagaaa ccattgccac gagatcgcga ggaacaagca atgcgcgaaa
     3061 aagtgggcca tacgatcgag ttgtaactgg cggagctccc aattgcgttt tgccgccgac
     3121 ttcgcaacca aacgcagtaa atcgtgctcg tgtggtccca cccgccagag ccgcgttatc
     3181 gataaatgcg cgcgagcgac acctccaaac gtttcgatcg cacccaaaaa cgcataacgg
     3241 aacgcgctga cgtgctcgcc tcgcgcgccg tcgcgaaacg tcgaagacaa atcgtgcgtt
     3301 tttccgtccg gccgttgctg atcgttgttg taacgatgat gattgcggac gtgcgtgagc
     3361 tcataagcct gaacagactg cccgatgttt atggagttga gcagcgagac cagccggttc
     3421 agccagggcg aacggaacca cgctgtgtga gtgaagagat gcgagacgac gatgatgttg
     3481 tagaccatca tcacgaccag gagcacaaac ccggcggctc gggtgagtgc cgaggctctt
     3541 tcccagaaaa ttgacaggag caatgtcgtg acgaactgcc ccacgcttag agccagcatg
     3601 atggcgtcga gataactgta tttccaaatc ctcataaacc cgccccatcg agtaagtacg
     3661 actgcagctt tccgcgacga cggacgtcga gagtggcgca atgaaaggat ccgccgaagg
     3721 tattgaagtt tctaaagttg cagggtatcg gcttgaagcc ccattccttc aaggccgcga
     3781 tcatcggctc atcctggcgc tcaaccatga tccgcttttc gtcgagcgag aggatgttca
     3841 tgttgatcca cttgctcgtc atgtaaaggg tatggtcgtc ggggatgatt ggctgcggtg
     3901 cgtgaaagat ctcccagccc cgaaagatac tcggcacttt gggaacccgc tcgggattga
     3961 ttagtaactt gccgggcgct aacggcacca acgtcgcatc gatgtgcatc ggatgcgagt
     4021 cggcaaactc aaacacatga atccgataag tttcgccgag gtgacggcga agccactcga
     4081 taccaaattc attcgtgacg ttgctcttct gcgcgacgat gtcgcggcca aaacgcatga
     4141 agtcagcggc atcgaaagta ggctcaaatt ccgtgatgac gtaacgcacg gcctcgccgt
     4201 cctgcggttc cgtccattcg tagtcgtaca actcgtccct gagctcggga tttggagcgg
     4261 cgctccactt cgcgccgttc ttgaagtact ccttgagcag tggtttgaac gcggcagtgc
     4321 cgtaatgacg cgagcgccag gaaagcggac actcgataat ttcgtcacca accaccagga
     4381 gcacgtcccg tggcatcgcg tcgtaaagtc cggtgctggt ccaccccggc gcgccgtact
     4441 cgcgcgtttg atcgatcggt gtaggccggc gcactttcac gccctcttct tcgagaatgt
     4501 gcacgaactc ttcgagttcc tgtctggcaa gggcgatttg ctcggcagga aacggccgtc
     4561 cggcattgtc gcggaaagtc tgccgttggc tgtggggcag cggcgcttcc acggagatgt
     4621 gagaaggcgg aaagttggcg ccgtctacta cgcccacgat cacttcttcg agtagatccc
     4681 attcgttata agagctgacc ggagatgcag ttgtatccaa tgagggtgcc gtagttgctc
     4741 tcatgatctt gctttcctga acgggctaag cgatttcaac cagggaggat tcagcttgga
     4801 cttcgatcgg cagtggggcc gtttcgggtt cgccgttaga cgcggtgatc gtatgaattt
     4861 cgccaaagac cgcgaagaac tcgggaaact tctgctggca cagtctcgcc gttacccggc
     4921 tcagtgcttc cgcgctgcgg aactccggta tgggccaacg caccgcgact tcgttgatcc
     4981 cgtcacgcat gacctcaccc ggaagagtca cgtcccaggt ggaccaatcg gtcgttatgg
     5041 ttagttcggc ctgtggttcg ccgttcaatg cgatcgtgat cttttcctcg cgtggcgccg
     5101 gtttgggaag acggcacgtc agcgagattt tcaccggata cccagcctcc gcgacaaaca
     5161 tgaaccgcga ctcaggccag aaagcacgga agtaacggac atcggtagcg agccgatagt
     5221 tgggccagtt gagtgcttcc aactcctgcg gctgttcggc tgttgagtag tagtagaagt
     5281 gaagcaggtc cgtctcgcta tgtctgacgc tgtgttcttc gcgccgcagt tgttcgagcc
     5341 gctcccggca tttgtaaccc gcatcctcaa gcacgtccac catggctccg agcagtgtct
     5401 tgtcgagccg tttgttgtta ttacgaaata gataacggtg gatcagcggc gaacccagat
     5461 gaaagatctt ttcttctgct tcactcatgc gcagcggcgc cgatctttgt gtctgaagat
     5521 cgaggtaact gagcatcatc tcggcgacgt gcggtgaatt cttcaacgcg cgctcgcagt
     5581 agtgacgagt aacgtcgtac gactgccagc ggtgcgcgtc gtgtatcgcg gcgaggaagg
     5641 acgcttccgc ttcgatctgc ggcgatggcg cgatctcatc gtcgacgagc gcgtaccagg
     5701 gaatgtccac tcccttcaac gagcgaagca cgcatgaggc cgccgcgccc atcgcgacct
     5761 gcattccctc agtcgtcagg tgacagtagt ccacaaagac ctggcggccg gggacttcac
     5821 cgttcagata ctcgtcgaat aatgcgggaa gatctactac ctgctgtcca tactcggcca
     5881 tgacctcgcg catgatctgc tgggtcaaac agtaggactt cggtatgtac gtcatcgacg
     5941 aatcccagct ttgcgagtcg cgggcaagtt cacggtattt cttctcgcct gcgcgatcgt
     6001 ttgcgaggcg gcggcattgg gccacgaggt gatagggcgc gttgcagacg ccctggtcga
     6061 tctcgatcat cttatgggcg agcttctccg ctgtttccgg atcgccattg ctcaacgcac
     6121 ttttggcctc ggcataaagt ttcagccatt ccttattcag atcgcccggc a
//
LOCUS       DASWTX010000478         2468 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_290144, whole genome shotgun sequence.
ACCESSION   DASWTX010000478 DASWTX010000000
VERSION     DASWTX010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2468
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290144"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..607)
                     /locus_tag="VGD38_07420"
     CDS             complement(<1..607)
                     /locus_tag="VGD38_07420"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY0727878.1"
                     /translation="MNNFISIFLNAVLAFSFAVANDWAEWRGPARDGVSAEKGLPEKW
                     SPAGDNLAWKAPYGGRSAPIVMGDRVYLINTAGQGETLQERIICFNADNGKVLWEHRF
                     NIYLSDVPPHRVGWASPVGDPTTGNVYVFGVGGNLIGLNRDGKVLWERSLGEDFGLLT
                     THGGRTVSPIIDGELVIVSGVTFQTGLHGRGAHRFMAFDKKT"
     gene            776..1579
                     /locus_tag="VGD38_07425"
     CDS             776..1579
                     /locus_tag="VGD38_07425"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEY0727879.1"
                     /translation="MLLPKVLLLSFFAALSLQTTAPSKQELNDQLFEAVRKGDAAAVT
                     AALDKGADVNAKYRYGMTALFKAAERGHTEAAKILLDRGVDVTVKDTFYKATAMTWAL
                     DNKHFGVVKLILEKGGGDVDDVLIQGAREENAELVKIALDKGGASPATLSAALALASA
                     ETKGAPIAEMLKAAGAKPPLEVDAAILQTYVGKFRGEPGPEIAISVKDGRLFASLGRD
                     AFPLMALDQTTFRPLAFSGITLVFNREAEKVSSITFKQGQNTSQLKRIE"
     gene            1719..>2468
                     /locus_tag="VGD38_07430"
     CDS             1719..>2468
                     /locus_tag="VGD38_07430"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY0727880.1"
                     /translation="MKRLTLSLLVIAVISTTVPAQNWPQFRGPGATGVVESPGQPVKW
                     DAAASQNVRWKLAIPGLAHSSPVVWGNKIFVTTAINSAKDETRFGLYGDVAPVKNDPS
                     HTWKVYAIDKAKGTILWERTASQNIPKVKRHPKSTHADSTPVTDGKYLVVLFGSEGLY
                     TYDLNGKLLWKQDLGVLDAGWFYDVDYQWEHGSSPIIYKDLVIIQADIQKGSFIAAYD
                     LKTGRLKWKTPREEIPSWGTPTVYEGKTRAEL"
BASE COUNT          553 a          687 c          718 g          510 t
ORIGIN      
        1 cggttttctt atcgaaggcc atgaagcggt gcgcgccgcg accgtgcagg ccggtctgaa
       61 acgtgacgcc actcacgatc acgagttcgc cgtcgatgat aggcgaaacc gtgcggccgc
      121 cgtgcgtcgt gagcaggccg aagtcttcgc cgagggaacg ttcccacaaa actttgccgt
      181 cgcgattcaa tccgatcagg ttgccgccca cgccaaagac gtaaacgttt ccggtcgttg
      241 gatcgccgac gggcgaggcc caaccgacgc gatgcggcgg cacgtcgctc aggtagatat
      301 tgaagcgatg ttcccacagc acctttccgt tatcggcgtt gaagcagatg atgcgttcct
      361 gcaacgtctc gccttgtccg gcggtgttta tcaggtagac gcgatcgccc atgacgattg
      421 gtgcggagcg tccgccgtac ggagctttcc aggcgaggtt atcgccggcc ggggaccatt
      481 tctccggcaa gcccttctcg gctgagacgc cgtcgcgtgc gggaccacgc cattcggccc
      541 aatcgttcgc cacggcgaac gagaatgcga gaactgcgtt caagaaaatg gagatgaagt
      601 tattcatttt aggaaaccgt ctcggtttta ggatgaacta tgtttcgctt gcaaccctaa
      661 ggatgtagaa tacgtaagct cacgttgctg cgttacattt ttttccggtg attctaacag
      721 gttccgcctc atccgttaac ttggcgtttg attgtgttgc tcaacaggag aaaccatgct
      781 gctccctaag gtcctactac tgtcattttt cgctgcgctg tcgctacaga ccacggcgcc
      841 ctcaaaacag gaattgaacg accagctttt tgaagccgtg cgcaagggcg acgcggcggc
      901 ggtgactgcc gcgctcgaca aaggcgccga cgtcaatgct aagtatcgtt atggcatgac
      961 ggcgttgttc aaggctgccg agcgtggaca caccgaggcc gcaaagattc tgttggaccg
     1021 cggcgttgac gtgacagtca aagacacgtt ctacaaggcg acggcgatga cctgggcgct
     1081 cgataacaag cacttcggcg ttgtgaaact gattttggaa aagggcggcg gtgacgtcga
     1141 cgacgtgctg atacagggcg cgcgcgagga gaacgcggag ttggtgaaga tcgcgctcga
     1201 taaaggcggc gcttctcccg cgacattgtc ggcggcgctg gcgctcgcgt cggctgagac
     1261 aaagggcgcg ccgatcgcag agatgttgaa ggccgctggc gcgaaaccgc cgttggaagt
     1321 ggacgctgcg atacttcaga cgtacgtcgg aaaattcaga ggcgagccgg ggccggagat
     1381 cgcgatctcg gtaaaagatg gacgactgtt tgcgagtctc ggccgcgacg catttccgct
     1441 gatggcactc gaccagacga cgttccggcc gttggcgttt tcggggatca cgctcgtttt
     1501 caaccgcgag gcggagaaag tctcgagcat aacgttcaag cagggccaaa acaccagtca
     1561 actaaagcgc atcgagtaac gcgttgagtt cccgttttga gttcctcgtt ttgagttcag
     1621 cctttaggct gccactgaaa gacaagctaa agcttgaact caaaacgagg cgctcgaaca
     1681 ggaactctca aacggtcgaa cttaaaacag gggtttcgat gaaaagactg acactctctc
     1741 ttcttgttat tgccgttatt tcaaccacag tccctgcaca aaactggccg cagtttcgcg
     1801 gtccgggcgc aaccggcgtc gtcgagagtc cgggacagcc cgtgaaatgg gacgccgccg
     1861 cgtcgcagaa cgtccgctgg aaactcgcga tccccggtct cgcgcattcg agtccggtcg
     1921 tgtggggcaa caagatattc gtcaccaccg caatcaacag cgcgaaggac gaaacacgct
     1981 tcggtctcta cggcgacgtc gctcctgtta agaacgatcc atcacacacg tggaaggtct
     2041 acgccatcga caaggcgaag ggcacgatcc tctgggaacg cacggcgtca caaaacattc
     2101 cgaaagttaa gcgtcaccct aagtcgaccc acgccgactc gacaccggtt actgacggca
     2161 agtatctcgt cgtgttgttt ggttctgaag gactctacac ctacgacctc aacggcaagc
     2221 tgctctggaa acaggacctc ggcgtgctcg atgccggttg gttttacgat gtcgattacc
     2281 agtgggaaca cggcagctca ccaatcatct acaaggacct cgtcatcatt caggccgaca
     2341 ttcagaaagg gtcgttcatc gccgcgtacg atttaaaaac tgggcgtctc aaatggaaaa
     2401 cgccgcgtga agagattcct tcgtggggta cgccgaccgt ttacgaaggc aagactcgcg
     2461 ctgagttg
//
LOCUS       DASWTX010000479         3201 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_244084, whole genome shotgun sequence.
ACCESSION   DASWTX010000479 DASWTX010000000
VERSION     DASWTX010000479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3201
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244084"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..824)
                     /locus_tag="VGD38_07435"
     CDS             complement(<1..824)
                     /locus_tag="VGD38_07435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727881.1"
                     /translation="MSSTLKLPKAAPVRFPKTVALDVLGEAGFAEFPAVRFPGKVIWC
                     NFDLARELGFDVPRTNQLTPELHEQLVAKLSLRSVNPDDDVSGLEIVTVYADRYGGEG
                     VTPALGAGRAGFLPDANLYIKGLGFTPLFKHNDKDDFVHSHGGVHLDDCMSEAIFGEV
                     DQNLFELGSSRIVAIIDQGKFVVEPSGRHREIALAIRTGAQLRPGHLLAKRVRGSRSP
                     LELFVEITRATGQLVLQNGTDIPDLTATMLRVIDDHARTAADSFRWRMIHGALSPS"
     gene            complement(799..2304)
                     /locus_tag="VGD38_07440"
     CDS             complement(799..2304)
                     /locus_tag="VGD38_07440"
                     /inference="COORDINATES: protein motif:HMM:NF013607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727882.1"
                     /translation="MLTEKRRYNLQIWALGLGYFLAYTPYSGLTKALSSGLLPGTNGP
                     VLGPVLLPLSAAGTVVGMLGFITVMGWWKHAGRREFFGVQVPFPRKLTFFSGVCMATI
                     MGTTTLAFTFGGLGIVLVLVLLRAGTLIIAPIVDAIVGRRVRWFSWGAMVMSLAAVLV
                     ALSDATSYVLTIAAAIDIAAYLAAYFFKLQFMSRLAKTDDRHATLRYFVEEQMVASPL
                     LLIALSVMAFIGAGNVMLGFRTGLTSFVMSEAAIYALLVGLFYAALCICTTLIFLDRR
                     ENTFCMPMHCGSSMLSGFAATAILAYSFGQPSPTVAQTISAGFIFIALGFLSPLHHVD
                     RLLAKLRGARRERLFLFVCSGNTCRSPMAAAIANAEIAARMRVPIDKLQTVNARALSA
                     GVSARVGEPLTAEAQEALRSLDVPVQEHAARNLTPEMAQQAERIFCMTNAVREAVIQM
                     LPAAANKTYCLDAASDIPDPIGKGMDAYLNCARRIHDLVRLRFDELDLKAA"
     gene            complement(2313..>3201)
                     /locus_tag="VGD38_07445"
     CDS             complement(2313..>3201)
                     /locus_tag="VGD38_07445"
                     /inference="COORDINATES: protein motif:HMM:NF019640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HEY0727883.1"
                     /translation="GMSTEEQKARWFKGVVERGEKWVVWSGEPQSRKPGEAVKFGTTV
                     ERVDGGYIIDGNKAFATSAGGAQWAILLVNTAGPGGVRHADASMLDTQLMMACNLSDP
                     AIEIDTSWWDPIGMRATVSHLVHFRCTFIPESDVIGYPGQYLKEGWQTCFIPHYAATF
                     LGAAEAAFDYALAYIKSQRKIDDPYVQHHIGQMSVNVETAHLWLKHVAHLWETGRYLE
                     AQIAGSRARHVVEHLAENTVKDCIRACGARCLIRPSALERVYRDLSFYVRHDNDDQIL
                     ATIGKSVLGLTHDPSFYKP"
BASE COUNT          684 a          952 c          961 g          604 t
ORIGIN      
        1 ttcgacggac tgagcgcgcc gtgaatcatg cgccaacgaa acgagtcggc tgcggtgcgc
       61 gcgtgatcgt cgatgacgcg cagcatcgtc gcggtgagat ccggaatgtc ggttccgttt
      121 tgcagcacta gctgaccggt cgctcgtgtg atctcgacaa acagttcgag cggtgaacgg
      181 ctgccgcgaa cacgcttcgc aagcagatgt ccgggacgaa gctgcgcgcc cgtgcgaatc
      241 gcgagcgcga tttcgcgatg ccgtcctgaa ggctcaacga cgaactttcc ctgatcgatg
      301 atggcgacga tgcggctgga accgagctcg aaaaggttct ggtcgacttc gccaaagatc
      361 gcttccgaca tgcagtcgtc gagatgaacg ccgccgtgcg agtgaacaaa atcgtctttg
      421 tcgttgtgct tgaacagagg agtgaagccg aggcctttga tgtagagatt cgcgtcggga
      481 agaaagcccg cgcggcccgc gccgagtgcg ggcgtgacgc cttcgccgcc gtagcgatcg
      541 gcgtaaaccg ttacgatctc caatcccgaa acgtcgtcgt ccgggtttac agatcgcaga
      601 gaaagttttg cgacgagttg ttcgtgaagc tcgggtgtga gctggtttgt gcgcggcacg
      661 tcgaagccga gttcgcgcgc gagatcgaag ttgcaccaga tgactttgcc ggggaaacgc
      721 actgcgggaa actcggcaaa accagcttcg ccgagtacgt cgagcgccac cgttttggga
      781 aaacggaccg gcgctgcttt aggcagcttt aaggtcgagc tcatcgaaac gcagccggac
      841 aagatcgtga atacgccgag cgcagttcag gtaggcgtcc attcctttgc cgatgggatc
      901 gggaatgtct gacgcggcgt cgagacagta ggttttgttg gcggccgcag gcaacatttg
      961 aatcacggcc tcgcgcaccg cgttggtcat gcagaagatt cgttcggctt gttgggccat
     1021 ctcgggtgtc aggttacgcg cggcgtgctc ttgcacgggc acgtccaacg aacgcagcgc
     1081 ttcctgtgct tcagccgtca acggctcgcc cactcgcgca gaaactcccg cactcagcgc
     1141 gcgggcgtta accgtttgca gtttatcaat cggaacgcgc atgcgcgcag ctatttcggc
     1201 gttggcaatc gccgcggcca tcggcgagcg gcaggtgtta ccgctgcaaa cgaagaggaa
     1261 caaccgttcg cgtcgcgcgc cgcgcagttt tgcgagcaga cgatcgacgt gatgcaacgg
     1321 cgacaggaac cccagcgcga tgaaaataaa accggcgctg attgtctgcg ctactgtcgg
     1381 cgatggctgt ccgaatgagt atgccaaaat tgccgttgct gcgaaccccg aaagcatgct
     1441 cgacccgcag tgcatcggca tgcagaaagt gttctcacgg cgatcgagga agatcagcgt
     1501 ggtgcagatg cagagcgcgg cgtaaaacag accaaccagc agagcgtaga tcgcggcttc
     1561 actcatcaca aagctcgtca gcccggttct gaagccgagc atcacgttac ccgcgcctat
     1621 gaaggccatt acgctcaatg cgattaggag caacggcgac gcgaccatct gttcttcgac
     1681 aaagtagcgc aatgtcgcat gtcgatcgtc ggttttcgcc agccggctca taaactgcag
     1741 cttgaagaag tacgcagcca ggtacgccgc gatgtcgatc gcggcggcaa tcgtcaacac
     1801 gtaactcgtc gcgtcgctga gggccacgag aacagccgcc aggctcatca ccatcgcgcc
     1861 ccacgaaaac cagcgcaccc gacggccaac gatcgcgtcg acaatcggcg cgatgatcaa
     1921 cgtgcccgca cgcagcaaca ccagcaccag cacgattccc aaaccaccga acgtaaacgc
     1981 cagcgtcgtc gtgcccatga tcgtcgccat gcagacgccc gaaaaaaacg tcagcttgcg
     2041 ggggaaggga acctgaacgc cgaagaactc gcgccgtccc gcatgcttcc accaacccat
     2101 caccgtgatg aaaccgagca tgccaacaac tgtgccggcg gcagagagcg gtagtaacac
     2161 cggtccgagt actggcccgt tcgtgccggg cagcaatccg ctcgacagtg ctttcgtcag
     2221 accgctgtaa ggcgtgtagg cgagaaaata acccaagccc agagcccaga tttgcaaatt
     2281 gtaacggcgc ttctcggtga gcatgttgtc ctttacggtt tgtagaaaga cggatcgtgg
     2341 gtcaggccca acacggattt accaatcgtc gcgaggatct gatcgtcgtt gtcgtgacga
     2401 acatagaaag agagatctcg ataaacgcgt tccagcgcgc tcggccggat caaacaacga
     2461 gcgccacacg cgcgaatgca atccttcact gtgttttcgg cgagatgctc gacgacgtgc
     2521 cgcgcgcggc tgcccgcgat ctgcgcctcg agataacgtc cggtttccca aagatgggcc
     2581 acgtgcttca gccacagatg cgcggtctcc acgttcactg acatctgtcc gatgtggtgt
     2641 tgcacgtacg ggtcgtcaat ctttctctgc gacttgatgt acgcgagcgc gtagtcaaac
     2701 gcggcttccg cggcgccgag aaatgtcgcg gcgtagtgcg ggataaaaca ggtctgccag
     2761 ccttccttga ggtactggcc gggataaccg atcacgtcgg actccggaat gaatgtgcag
     2821 cggaagtgga ccaggtgact gacggtcgca cgcatgccga tcgggtccca ccaagacgtg
     2881 tcgatctcga tcgccggatc ggaaagattg cacgccatca tcagttgcgt gtcgagcatg
     2941 gacgcgtcgg cgtgacgcac gccgccggga ccggctgtgt taacgagaag aatcgcccac
     3001 tgcgcgcccc ccgcgctggt ggcgaatgct ttgttgccgt cgatgatgta gccgccgtcg
     3061 acgcgttcga ccgtggtgcc aaacttcact gcttcgccgg gtttacgcga ctgcggttcg
     3121 ccgctccaca cgacccactt ctcgccacgc tcgacgacgc ctttgaacca gcgcgccttt
     3181 tgttcttcag tgctcatgcc g
//
LOCUS       DASWTX010000480         1772 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_417630, whole genome shotgun sequence.
ACCESSION   DASWTX010000480 DASWTX010000000
VERSION     DASWTX010000480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1772
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417630"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..332
                     /locus_tag="VGD38_07450"
     CDS             <1..332
                     /locus_tag="VGD38_07450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727884.1"
                     /translation="IWNRWGQHTLGIGYTYQRSLYSGSRERSGPRYPIPSTNVIGTTA
                     DELGIPQFAIGQPFNVQFRLRAQSAECTLCPLFNVRGTHVPVSLQVFRGEFGPPTFDT
                     RANYNAA"
     gene            333..>1772
                     /locus_tag="VGD38_07455"
     CDS             333..>1772
                     /locus_tag="VGD38_07455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727885.1"
                     /translation="MQDTWRINRYVTALLGLRTEQERLIGSPNSVTGDRYGYSFTGQY
                     APRLGVTVDPRGTGNIKLFYNYGRFFEFLPLDAAERSLSQELDFVGARFAPAFTVNAA
                     GQRIVTLNEFGAPIPVIDPAHLLSGAQDAGGLSNAITVSASDLSAITAGTKLGFQDEH
                     IVGAEFQLPRNFVLSVRYQYRNLKRVVEDMAVLSPEAALAGVTQTYFIGNPSSRLDAA
                     TNLQQFTYPLGGTAPAGCTSGISSVVTDPVTGADIGNVCFGSVGIDPLTGASINVPDG
                     IPDGFPDPVRKYKAFEFELNKRFSNNWQLLSNFRIASLRGNYEGHLRNDNGQTDPGIS
                     SLFDFTAGEFNLLGDQFRIGPLNTDRRFVSNIYASYGFGDNRTGFNWRFLQGLNLGMG
                     FRMESGIPISEYLPHPVYLNAGEVPVGGRGKLVRTPFYTQLDLHADYPWVINERARVS
                     FIADFFNVTNNRRLRLPDQFRQLDLGENNP"
BASE COUNT          358 a          527 c          491 g          396 t
ORIGIN      
        1 agatatggaa ccgctggggc cagcacacgc ttggtatcgg ttacacctac caacgttcgc
       61 tttactccgg cagccgggag cgcagtggac cacgttatcc gattccgtca acaaacgtga
      121 ttggaacgac ggcggatgag ctcggcattc cgcagtttgc catcggacag ccattcaacg
      181 tgcagtttcg cttaagagca caatccgcgg agtgtacgtt gtgtccgttg ttcaacgtcc
      241 gcggcacaca cgtgcccgtg tcgttgcagg tcttccgtgg cgaatttgga ccaccgactt
      301 tcgacacgcg cgcgaactac aacgccgctt aggtgcaaga cacgtggcgc atcaatcgtt
      361 acgtaaccgc gttgcttggt ctaagaactg aacaggaacg gctcatcggc agtccaaatt
      421 cagtgaccgg cgaccgttac ggttacagct tcacgggcca gtacgcgccg cggcttggcg
      481 tcacagtcga tccgcgaggc accggcaaca tcaaactgtt ctacaactac gggcgcttct
      541 tcgaattcct gccgctcgac gctgctgagc gttcgttgtc gcaagaactc gacttcgtgg
      601 gtgctcgctt tgctccggcg tttacggtca acgcggccgg tcagcgaatc gtcactctca
      661 acgaatttgg cgcgcccata cccgtgatcg atccagctca cctgctcagc ggtgcgcaag
      721 acgccggtgg cttatcaaat gcgatcacgg tttcggcatc ggatctcagc gcgattactg
      781 cgggcaccaa actcggattc caggacgaac acatcgtcgg cgccgagttc cagttgccgc
      841 gcaacttcgt gctgtcagtc cgttatcaat atcgaaacct gaagcgcgtg gtggaagaca
      901 tggcggtgct ctcgcctgaa gcagcactgg ccggcgtcac gcaaacttac ttcatcggca
      961 atccgagctc acggctcgac gctgctacaa acttgcagca gttcacatac ccgctcggcg
     1021 gtaccgcgcc tgcgggctgc acgtcgggca tctcgtctgt ggttaccgat cccgtcaccg
     1081 gcgccgacat cggaaacgtt tgcttcggca gcgttggtat cgatccgctc acgggcgctt
     1141 cgatcaacgt gccggacggc attcccgacg gcttccccga tccggttcgg aagtacaaag
     1201 cgttcgagtt tgagttgaac aaacgtttca gcaacaactg gcaactgctt tcgaacttcc
     1261 gcattgcttc gttgcgtgga aactacgaag gtcacctgcg taacgacaat ggtcaaactg
     1321 atcccgggat cagttcgcta ttcgacttca cggcgggaga gttcaacctg ctcggcgatc
     1381 agtttcgcat cgggccgttg aacacagacc ggcggttcgt ttcgaacatc tatgcgagct
     1441 acggctttgg cgataatcgc accgggttca actggcggtt cttgcagggg ttgaaccttg
     1501 gcatgggttt ccgtatggaa tcgggcattc cgatcagcga atatttgccg catcccgttt
     1561 acctgaacgc gggtgaggtt ccggttggcg gtcgtggtaa actcgtgcgc acgccctttt
     1621 acacgcagct cgatctgcac gcggattatc cgtgggtgat caacgagcgc gcgcgagtaa
     1681 gcttcatcgc tgacttcttt aacgttacaa acaaccggcg cttgcgcttg ccggatcaat
     1741 ttcgccaact cgatcttggc gagaacaatc cc
//
LOCUS       DASWTX010000481         1530 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_399014, whole genome shotgun sequence.
ACCESSION   DASWTX010000481 DASWTX010000000
VERSION     DASWTX010000481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_399014"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..452)
                     /locus_tag="VGD38_07460"
     CDS             complement(<1..452)
                     /locus_tag="VGD38_07460"
                     /inference="COORDINATES: protein motif:HMM:NF024869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HEY0727886.1"
                     /translation="MHPSSLAITKKVAELLERGVAAVVISVARGENAGAKLLIDEAGN
                     TTGSLGELDSLVGPQVSKFLQSRDETRLVCVKDFAVDFPSAGETFLLFERLQASPRLV
                     VCGAGHVGASLAKLGAFLGYQTTLIDDRAEFLQRDRFVGSEIELVVAS"
     gene            complement(452..748)
                     /locus_tag="VGD38_07465"
     CDS             complement(452..748)
                     /locus_tag="VGD38_07465"
                     /inference="COORDINATES: protein motif:HMM:NF017897.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF962 domain-containing protein"
                     /protein_id="HEY0727887.1"
                     /translation="MPENFLASYKAKHQHPLNRLTHSIGIPMIVISLPLVFFSWRWAL
                     ALFVVGWIFQFIGHAIEGNQPAFFKNPVYLLIGPLWLLRRAASSVGLIKTKPAK"
     gene            complement(741..1070)
                     /locus_tag="VGD38_07470"
     CDS             complement(741..1070)
                     /locus_tag="VGD38_07470"
                     /inference="COORDINATES: protein motif:HMM:NF014662.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HEY0727888.1"
                     /translation="MPTIPQRDLYRMINEAGERGERVVVATVAHTRGSTPQQRGAKML
                     FFQNGEVAGTVGGGCIEAEVWAEAQTAMRSGNSALHHFSLTADEASEEGMVCGGTMDI
                     FVEVLGA"
     gene            1164..>1530
                     /locus_tag="VGD38_07475"
     CDS             1164..>1530
                     /locus_tag="VGD38_07475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727889.1"
                     /translation="MRLQKTSLLLAAIAAVLLSPINALACACCSNPGHYFSGEVDLDE
                     HPRSELERIRVARTAYLYETEAGLEEDALGIDRPKTSYTVQGAFVGNVWRLTFRSGTN
                     TGTLELPLPNKMWNHSVDIH"
BASE COUNT          351 a          473 c          403 g          303 t
ORIGIN      
        1 tcactcgcga caacgagttc gatctcggaa cccacgaaac gatcgcgttg taaaaactcc
       61 gcccggtcgt cgatgagcgt tgtttgataa ccgagaaacg cgcccagctt cgccaacgac
      121 gccccaacgt gtcccgcgcc acacacaacc agccgcggcg acgcctgcaa acgttcaaat
      181 aaaagaaacg tctcaccagc cgacggaaag tccacggcga aatccttcac gcaaaccagc
      241 cgcgtttcgt cgcgcgactg tagaaacttc gaaacctgcg gcccaaccag cgaatccagc
      301 tcgcccaaac ttcccgtcgt attcccggcc tcgtcgatca acagcttcgc gccggcattc
      361 tcaccacgcg caactgaaat cacgaccgcc gcaacgccgc gttcgagtag ttcagcaacc
      421 ttcttcgtaa ttgccagcga agacggatgc attattttgc aggttttgtt ttgatcaagc
      481 cgaccgacga cgctgcgcgc cgcaacagcc agagtggtcc aatcaggaga tagacggggt
      541 ttttgaagaa cgccggttga ttaccttcga tcgcgtgacc gatgaactga aagatccagc
      601 cgacgacaaa caatgccaaa gcccaacgcc aactgaaaaa cacaagcggc agcgagatga
      661 cgatcatcgg aatgccgatg ctgtgcgtca aacggttcag cgggtgctga tgcttcgctt
      721 tgtagctggc taaaaagttt tcaggcacct aagacctcga cgaatatgtc catcgtaccg
      781 ccgcaaacca ttccttcttc actcgcttca tcagcggtga gtgagaagtg atgcaacgcc
      841 gaattgccgg agcgcatggc ggtttgcgcc tcggcccaaa cctccgcttc gatgcaacca
      901 ccgccgaccg tgcccgcgac ttcgccgttc tgaaagaaga gcatcttcgc accgcgttgc
      961 tgcggagtcg agccgcgcgt gtgtgcgaca gtcgccacga cgactcgttc gccgcgctca
     1021 ccggcttcgt tgatcatgcg atacaggtcg cgttgcggaa tggtcggcat attgatttgg
     1081 tgtttggcct ttcgctgaga tagtttacgt cagcagcgag actgtttgct acggctgagg
     1141 cccgcaaagc tcgccgggaa aatatgcgct tacaaaaaac ttcgcttctg ctggccgcga
     1201 ttgcggccgt gctcttatcg ccgatcaatg cgctcgcgtg tgcgtgttgc tcaaatccag
     1261 gccactattt cagcggtgaa gtcgacctcg acgagcaccc gcgttctgaa ctcgaacgca
     1321 ttcgcgtcgc gcgcaccgcg tacctctacg aaacggaagc cggtctcgaa gaagacgcgt
     1381 taggtatcga ccggccgaag acgagctata cggtacaggg cgcgttcgtc ggcaacgtgt
     1441 ggcgcctcac gtttcgttcc ggcacaaaca ccggcacttt ggagttgccg ctgccaaaca
     1501 agatgtggaa ccactcggtc gacatccacg
//
LOCUS       DASWTX010000482         2736 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_5596, whole genome shotgun sequence.
ACCESSION   DASWTX010000482 DASWTX010000000
VERSION     DASWTX010000482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2736
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5596"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..308
                     /locus_tag="VGD38_07480"
     CDS             <1..308
                     /locus_tag="VGD38_07480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727890.1"
                     /translation="SGVTADLRAVDSVSVVLNNINDPATCAATGTPTTPPCQVPVIGT
                     TVEQPPAQSMGGALNSSYGVVTMPTPLAPGASVNVQFVLGVEKTGSFKFFFNIEALP"
     gene            complement(802..>2736)
                     /gene="lon"
                     /locus_tag="VGD38_07485"
     CDS             complement(802..>2736)
                     /gene="lon"
                     /locus_tag="VGD38_07485"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: protein motif:HMM:TIGR00763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HEY0727891.1"
                     /translation="DPVRLAYFLGSVLTLGVAEEQKMLEADTADELLRLAHTDLAREL
                     EIMQLRTKIASEAQVEMDKAQRDYVLRQQMRAIQKELGEDETGEAAEANMLRERLEKA
                     DLPDEVRTEAERELRRLERLPPAAPDYQVIRTYLDFVLELPWKKSSEDKLDLPEARRI
                     LDEDHYGLEDVKERILEFLAVIKLRPDTKSPILLFVGPPGVGKTSLGRSIARALGRQF
                     ERMSLGGVRDEAELRGHRRTYIGALPGRIIQSIRRAGVNNPVLMLDEIDKLGADYRGD
                     PAAALLEILDPQQNNSFRDHYLDLPFDLSKIFFIATANQLGPIPAPLRDRMEIIRLAG
                     YSDREKLEIARRYLVPRQTTENGLTAAQFKITTGAIELIAARYTREAGVRQLERSIGS
                     VARKVALKIAQGEKESEEVDEKGVREYLGPPQFYPEQARKELPAGVATGMAWTEMGGE
                     VLFIEATLLPGGRGLTITGQLGEVMQESARAAQSYLWSHATEFGIDPEIFKDYGVHLH
                     VPAGAIPKDGPSAGVTITSALASLYTGRRVRPDTAMTGEITLSGLVFPIGGVKEKVLA
                     AHRAGIRRILLPSRNEADVDDIPQDVRNELQIIFVSTINEVIEAALEVLVANPPPPVV
                     TDASRTGRRPEPEPLTVKGS"
BASE COUNT          544 a          882 c          754 g          556 t
ORIGIN      
        1 gatcgggagt taccgcagat ttgcgagcgg tagattcggt ctcggtcgta ctcaacaaca
       61 tcaacgatcc ggcgacctgc gcggcgacag gcacaccaac cacgccgccg tgtcaggtgc
      121 cggtcattgg aacgaccgtc gagcaaccgc cggcgcaatc catgggcggc gcactcaaca
      181 gcagttacgg agtagtaacg atgcccacac ccctcgcccc gggagcgagc gttaacgttc
      241 agttcgtgct cggcgtagag aagacgggtt cgtttaagtt cttcttcaac atcgaagcgt
      301 tgccgtaacg gacgcttcgc acagacaaag cgaggtcacc aggttcgccc tggtgacctc
      361 gttttctttt gtcgttgtag aatcccaccg acgcagtcgg tggtgttttc atacctcacc
      421 taccaacaac cttggagaga gaacaatccc accgacgcag tcggtggatc gttcagacct
      481 cacctaccaa caaccttgca gatagaacaa tcccaccgac gcagttggtg gatcgttcac
      541 ttgtatgaac aaaccaccga ctgcgtcggt gggattgaag tcttcttgtc gggctctgta
      601 ggtagggtct gaaacatcca ccgacttgcg tcggtgggat tgacctctcc gcaaggttgt
      661 tggtaggtga cgtctgaaaa ccaccaccga ctacgtcggt gggattcgaa agccagcctc
      721 gaccaactac gtcgtggggt tcgaaagcct ccaccaactg cgtcggtggg attcgaaaac
      781 cgcttagaat cctctgaccg cttacgaacc tttgacggtc agcggctcgg gttcggggcg
      841 gcggccggtg cgggaggcgt cggtgacgac cggaggtggt gggtttgcta ccaacacttc
      901 caaggccgct tcgattacct cgttaatcgt cgagacgaag atgatctgaa gctcgttccg
      961 cacatcctga ggaatatcat ccacgtccgc ttcattccgg ctcggcaaca agatccttcg
     1021 aatccccgcg cggtgcgccg cgagcacctt ctccttcacg ccgccgatcg gaaacaccag
     1081 acccgaaagc gtgatctcac ccgtcatcgc cgtgtcggga cgcacgcggc gcccggtgta
     1141 caacgacgcc agcgccgaag tgatcgtcac acccgcactc ggaccatcct tcggtatcgc
     1201 gcccgccgga acgtgcaggt gaacgccgta gtctttaaag atctccggat cgattccaaa
     1261 ctccgtggcg tgtgaccaca aatacgactg cgccgcacgc gccgactcct gcatcacttc
     1321 gccaagctgg cccgttatcg tcaggccgcg tccacccgga agcagcgtcg cttcgatgaa
     1381 caaaacctcg ccgcccatct cggtccacgc catgccggtc gcgactcccg cgggcaactc
     1441 cttgcgcgcc tgttcgggat aaaactgcgg cggtccgaga tactcacgga cgcctttttc
     1501 atccacttcc tcagattcct tttcgccctg cgcgatcttc aacgcgacct tgcgcgccac
     1561 actgccgatg ctgcgttcca actgccgcac gcccgcttcg cgtgtgtaac gcgcagcgat
     1621 caattcgatc gcgccagtcg tgatcttgaa ctgcgcggca gtcaaaccgt tctcggttgt
     1681 ttgccgcggc acgagataac gacgcgcaat ctccagtttc tcgcgatcgc tgtaacccgc
     1741 gagccggatg atctccatgc gatcgcgcaa cggcgcggga atcggcccga gctggttcgc
     1801 cgtcgcgata aaaaagatct tcgaaaggtc aaacggcaga tcgagataat gatcgcgaaa
     1861 cgagttgttc tgttgcggat cgagaatctc gagcagcgcc gccgccggat cgccgcgata
     1921 gtccgcgccg agcttgtcga tttcgtcgag catcagcacc gggttgttca cgcccgcacg
     1981 ccggatcgac tgaatgattc gtcccggcag cgcgccgatg tacgttcgcc ggtgtccgcg
     2041 caactcggct tcatcacgaa cgccgccaag cgacatgcgt tcaaactgcc gcccgagcgc
     2101 ccgcgcgatc gaacgtccga gcgacgtttt gccgactccc ggcggaccga caaacagcaa
     2161 gatcgggctc ttcgtatccg gccgcagttt gatcacggcc agaaactcga gaattcgttc
     2221 cttaacgtct tcgagcccgt agtgatcttc gtcgagaatg cgccgcgcct caggcagatc
     2281 gagtttgtct tcagacgact tcttccacgg caactccagc acgaaatcga gatacgtccg
     2341 gatgacctgg taatcaggcg ccgcgggcgg caggcgttcc aaacgcctca actcgcgctc
     2401 ggcttccgtg cgcacttcat ccggcagatc agccttttcg agccgttcgc gcaacatgtt
     2461 ggcttcggct gcttcgccag tttcgtcttc gccgagttcc ttctgaatgg cgcgcatctg
     2521 ctgccgcaac acgtaatcgc gctgggcctt gtccatttca acctgcgctt ccgaagcgat
     2581 cttcgtgcgc agttgcatga tctccagctc gcgagcgagg tccgtgtgcg cgagacgcag
     2641 gagctcgtcg gccgtgtcgg cttcgagcat cttctgctct tctgcaacgc cgagcgtcag
     2701 cacggaaccg aggaaatacg ccagccgaac cggatc
//
LOCUS       DASWTX010000483         5065 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_266231, whole genome shotgun sequence.
ACCESSION   DASWTX010000483 DASWTX010000000
VERSION     DASWTX010000483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5065
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266231"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..642)
                     /locus_tag="VGD38_07490"
     CDS             complement(<1..642)
                     /locus_tag="VGD38_07490"
                     /inference="COORDINATES: protein motif:HMM:NF015780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727892.1"
                     /translation="MAERKKIENSNLRHVPSVDQLLRTDVARRLRESIGLKRVTAIAR
                     SVTNEIRSSIRQNPFENGHSPEALLAEAVSRMEQTARREGETGIKKVINATGVLLHTN
                     LGRAPLSNAARAAVAEAAGHCNLEYDVATGTRGKRGARVESLLKHLTGAEDALVVNNC
                     AAAALLILTVLAGDGETIVSRGELVEIGGDFRVPDVMASSGTQMVEVGTTNRTH"
     gene            727..1383
                     /locus_tag="VGD38_07495"
     CDS             727..1383
                     /locus_tag="VGD38_07495"
                     /inference="COORDINATES: protein motif:HMM:NF041621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MXAN_5187 C-terminal domain-containing protein"
                     /protein_id="HEY0727893.1"
                     /translation="MGLRQNKLLRAKLHVKAKNKFSTGENQPTPDEQLTRLEDDIRRL
                     RIEFDIFFNGAAKRPPYDTKGRVETLLKRLGDDRTLTYAQRYRYNSLTARYNAFRDLW
                     RRTMQGREEGRDPASAARANAKKQTTIEIEPVSISCRDPHKEIEVVKSLYSSLVEAKQ
                     KCGEPTEGFSFPKFHRLVAQKADALKEKTGCERVVFSVALDEGHVSFKAKPEGELKAR
                     "
     gene            complement(1518..1724)
                     /locus_tag="VGD38_07500"
     CDS             complement(1518..1724)
                     /locus_tag="VGD38_07500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein"
                     /protein_id="HEY0727894.1"
                     /translation="MSRITGKVKWFNNSKGYGFIEQPGSSDIFVHYSAIQGDGFKTLE
                     EGQEVEFEVTQGPKGPQAEKVTKM"
     gene            complement(2106..2972)
                     /locus_tag="VGD38_07505"
     CDS             complement(2106..2972)
                     /locus_tag="VGD38_07505"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEY0727895.1"
                     /translation="MARDERFYAFIIAHTSRSRARVQRIRIEKKVVTIVIAASALLTV
                     GLCYGLYGLTQHAAHLRTEYENQRLKAENERQRVELEKLNNRVEKVEDTSRKLAEKSG
                     VVDHGLTSGSGGPALPLDEMGLATLTAKMSRLEEDMRAYEAVLRERGYTPTIWPVNGK
                     LEGGFGGRRNPFGGSGYEFHSGQDIEAPWGAPVVAGASGRVTFVGWQNGYGQLVVVDH
                     GGGLTTRYGHLSHIDVEADQTVSRGQLLGKVGSTGRSTGPHLHYEVRINDQAVNPMQY
                     LLETGPIHAAQP"
     gene            complement(3227..3406)
                     /locus_tag="VGD38_07510"
     CDS             complement(3227..3406)
                     /locus_tag="VGD38_07510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727896.1"
                     /translation="MIAVILLVVALLKQLIGLVAFLLTLLKIAIVVVFLAVLVMIVLA
                     IFRDRARKKREYEDI"
     gene            complement(3481..4128)
                     /locus_tag="VGD38_07515"
     CDS             complement(3481..4128)
                     /locus_tag="VGD38_07515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727897.1"
                     /translation="MAGVELLRHSHASPSNILRRKSSPFVATLLSFVPGLGAAYNGQT
                     SKAIVHFAIFASFFQMAVVTQGMHFFILGVIGTWLFAAVDACRTAQLMRAGLSPDAED
                     DVIARRLYGNPLAWGTTLIIIGTLFLLHTLLRVTLPIKELLPVALVALGAYMLFDYIR
                     RSKSSDRIVRFDSRRPPPSVVAGTRPTDATHFRTGETTQLGRQDIKPLPFERKSK"
     gene            complement(4263..>5065)
                     /locus_tag="VGD38_07520"
     CDS             complement(4263..>5065)
                     /locus_tag="VGD38_07520"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HEY0727898.1"
                     /translation="AGKRNVMLCVDFETLLTDYIEGVTGPETNRQMAAHAMKCPLCHE
                     TLSAVKDTVAACRVAAVPPPSRDLDARILQKTVPSTAMTCEEFEEFLTDYLDGFLPAH
                     LYHRWERHAALCERCTELPGEVVRSIGACYTYISEEKPLPAGLHDKIMEATLGTLTPQ
                     EIKAPWTARAASRFRLWLDPLISPQLASVATMILVAVLVLTHTVSADGSISGVYDAGL
                     ALAERTGTQSQVIQQQTPPPAPPQEQNNDQEKDTPGGAKPDNNGHKNR"
BASE COUNT         1173 a         1451 c         1401 g         1040 t
ORIGIN      
        1 atgcgtgcgg ttggtcgtgc cgacttcaac catctgcgtg cccgaactgg ccatcacgtc
       61 aggcacgcga aagtcaccgc cgatctcgac cagttcgccg cgcgacacga tcgtctcacc
      121 gtctccggcc aggaccgtga gaatcaacaa cgccgccgcg gcgcagttgt ttacgaccag
      181 cgcgtcttcg gccccggtca gatgctttaa aagcgactcg acacgcgcgc cgcgtttgcc
      241 gcgcgttccg gtggcgacgt cgtactccaa attgcaatgg cccgcagctt ccgcaacggc
      301 cgcgcgcgcg gcgttcgaaa gcggggcacg gccgaggttt gtgtgtaaca acacgccggt
      361 cgcgttgatt acctttttga ttccggtttc gccttcgcga cgtgcagttt gctccatgcg
      421 agacacggct tcggcgagga gcgcctctgg ggaatggccg ttttcgaagg gattttggcg
      481 gattgaagag cggatctcgt tggttacgga ccgcgcgatc gcagtcacgc gtttcaagcc
      541 gatcgactcg cgaaggcggc gcgccacgtc agtgcgcagc agttggtcca ctgacggcac
      601 gtgacgcagg ttggaatttt ctattttctt gcgctctgcc ataccggcat tatagactgc
      661 cttgactcgc gttgcggtac gagcgcgaac ccgccctaat tcacctcgct ccggagaaca
      721 atccaagtgg gactacgtca gaacaagcta cttcgcgcca aattacacgt aaaagccaag
      781 aacaagtttt caaccggaga gaaccagccg acaccagacg aacaactgac ccgattagaa
      841 gacgacatcc gccggctgcg catcgagttt gacatcttct tcaacggcgc ggcgaagcgc
      901 ccgccttacg acaccaaagg acgggtcgaa acgttgctga agcgtctcgg cgacgaccgc
      961 acgctgacct acgcgcagcg ttatcgctac aactcgctca cggcgcgcta taacgctttt
     1021 cgcgatttgt ggcgccgaac gatgcaggga cgtgaagagg gccgagatcc agcgtcggct
     1081 gcgcgcgcca acgccaaaaa acaaaccacg atcgaaattg aaccggtgtc gatcagttgc
     1141 cgcgacccgc acaaggagat cgaagtggtg aagagtctgt acagctcgtt ggtggaggcg
     1201 aaacagaagt gcggcgagcc gacggaaggg ttttcatttc cgaagtttca ccggctggtg
     1261 gcccaaaagg ctgatgcgct caaagagaag acaggatgtg agcgagtagt tttctcggtc
     1321 gctctggacg aagggcacgt gagtttcaag gccaaacccg agggggaatt gaaagccaga
     1381 taaaagcaag acgccaatta gaagaggcga ccagaaagag aaaaggcgac cactgctggt
     1441 cgccttttct cttgtgagct taccggaccc gtgaccggaa gcagtcagtg gctttgctaa
     1501 agcaagccgg ggagacatta catcttcgtc actttttcag cctgtggtcc ctttggccct
     1561 tgggtaacct caaactcgac ttcctgaccc tcttcaagag tcttgaagcc gtcgccctgg
     1621 atagcgctat agtgaacaaa gatatccgaa gagccgggct gctcgataaa accatagccc
     1681 ttcgaattgt taaaccactt gaccttaccg gttattctag acataacaac gaatcctcct
     1741 aacgattcgg taaaacggac cgaaagccgc aaagccttcg gatcgactgg tgaatgcttg
     1801 tgagccgggt cgcgccctga cgtagcgcta gacggaaaca cacaaccaac aaaaaatgca
     1861 tgatgaaaag cgcggggagc gctatttcag catgcacaca cttacggggg cagaactaac
     1921 aaaactcatt gacgtaaagc ttttttcggg aatgcggggc tcggcattac tgccccggca
     1981 tcgaaacgac ggcgcagttt aggcgaactt ttgcaggctg tcaagcaaga agttcagcta
     2041 gcggcaaagc taagttaagc gacggctcag gttaagggcc acaccctgtt ttatttcaat
     2101 gtgttttatg gctgagccgc gtggatcgga ccagtctcca gcaaatactg catcggattc
     2161 accgcctggt cgttgatccg gacctcgtaa tgcaggtgtg gaccagtcga acggcccgtc
     2221 gaaccgactt tccccagcaa ttgcccgcgt gaaacggtct gatccgcttc gacgtcgatg
     2281 tgcgaaaggt gaccataacg cgtggtcaaa ccaccgccgt gatcgacaac taccaactgc
     2341 ccgtagccat tctgccagcc gacaaacgtg acccggccac ttgcgcccgc aaccaccggc
     2401 gcgccccagg gcgcttcgat gtcctggccc gaatgaaatt cataacccga accaccaaac
     2461 ggatttcgac gtccgccaaa accgccctcg agttttccgt ttacgggcca gatggtcggc
     2521 gtgtagccgc gttcacgcag cacggcctca tacgcgcgca tgtcttcttc gagccggctc
     2581 attttcgcag tcagcgtcgc gagtcccatc tcgtcgagcg gcaaggccgg accaccggaa
     2641 ccagacgtca ggccatgatc gaccacgcct gacttctcgg cgagcttgcg cgacgtgtct
     2701 tcaacttttt cgacgcgatt gttgagtttc tcgagctcga ctcgctgccg ttcgttttcg
     2761 gctttaaggc gttggttttc gtactcggtg cgcaggtgcg cggcgtgttg ggtcaatccg
     2821 tagaggccgt agcacagtcc aaccgtcagc agtgccgaag cggcaatgac gatcgtgacg
     2881 actttctttt caatccgaat tctttgtact cgtgctcggg aacgggaagt gtgggcaata
     2941 ataaaagcgt aaaaccgttc gtctctggcc attttgggct gctcctgttg cgggcacggt
     3001 taattccggg ggctgcgcca gcaaccaaaa ggcacaaact cgccaaatgc gatttgcgcg
     3061 attacgggaa agtttttatt tctgaaccta cttgaagatt tgcagcggtt ggattgaaaa
     3121 cctcaaggtc cctccgaggt gaaatccgta ccggccggtc ctgcaaaaga gccctgaccc
     3181 tatcacaggg ctgcgaggag ttgcaacttt gcaaggaaaa agcaagttaa atgtcttcgt
     3241 attctcgttt cttgcgcgcg cgatctcgga agattgccaa tacgatcatc acaagcacgg
     3301 cgagaaacac gacgacgatc gcgatcttca acagggtaag caggaatgcg acgagaccga
     3361 tgagttgttt cagcagcgcc acaacgagaa ggatcactgc aatcaagccg ccgagtccac
     3421 ttccgatttt taaaagccca caacacataa agttttaccc cgtcgagtat taccaaacga
     3481 ttatttcgat tttcgttcga acggcaacgg cttaatgtcc tgtcgtccga gctgagtagt
     3541 ttcacccgtg cgaaaatggg ttgcgtcagt cggcctcgta ccggcgacta ctgacggcgg
     3601 cggacgccgc gaatcgaaac gcacgattcg atccgacgac ttgctacggc gaatatagtc
     3661 aaacaacatg taagcgccaa gcgctacgag cgccaccggc agcaattcct tgatcggcag
     3721 cgtcactctc aacaacgtgt gcaacaggaa aagcgtgccg atgatgatca gcgtagttcc
     3781 ccatgcaagc gggttgccgt agagacgccg cgcaatcaca tcgtcttccg catcgggact
     3841 caaacccgca cgcatcaact gcgccgtgcg gcaagcatca accgccgcaa acaaccatgt
     3901 accgatcacg ccgagaatga agaagtgcat tccctgcgtc acgactgcca tttgaaagaa
     3961 gctggcgaag attgcgaagt ggacgatggc tttcgacgtt tgtccgttgt aagcagcgcc
     4021 gagaccgggc acgaatgaaa gcagtgtcgc gacaaacggc gaactcttgc gccgcaggat
     4081 gtttgacggg ctggcatgcg aatgccgcag caactcaaca ccggccacga tgcagtcctg
     4141 gcaaaacgga aatccacgca cccgatgatc gcaagccggg catagccacc gtgcacattg
     4201 attgcactga accaccgcgg gattcttggc atggtagcta cagtacatca tcttgatttc
     4261 cctcaccggt tcttatggcc gttgttgtct ggctttgcgc cgccaggcgt gtctttctct
     4321 tgatcgttat tttgttcctg cggaggcgca ggtggcggag tctgttgttg aattacctgc
     4381 gactgcgtgc ccgttctttc agcaagcgcg aggcccgcat cgtagacacc gctgatcgaa
     4441 ccatccgccg aaaccgtgtg ggtcaacacg agcacggcaa cgagaatcat cgttgcgacg
     4501 ctggcgagct gtggcgagat gagcggatcc agccacaacc ggaaacgcga agcagcgcgc
     4561 gcggtccacg gggctttgat ctcctgcgga gtcaacgtgc ccaaagtcgc ttccatgatc
     4621 ttgtcatgaa gaccggcagg cagtggtttc tcttctgaaa tgtaggtgta gcacgcgcca
     4681 atcgagcgca cgacttcacc gggaagctcg gtgcagcgct cacaaagcgc ggcgtgacgt
     4741 tcccaacgat gataaagatg agccggcagg aaaccgtcga gatagtccgt cagaaactcc
     4801 tcaaactctt cgcacgtcat cgcggttgat ggaactgttt tctgaagaat gcgtgcgtcg
     4861 agatcacgcg agggcggcgg gaccgctgcc acacggcacg ctgcgacagt gtctttcact
     4921 gccgacaggg tctcatggca aagcgggcac ttcatcgcgt gcgccgccat ctgccgattg
     4981 gtttcgggac cggtcacgcc ctcaatgtaa tcggtcagta gggtttcaaa atccacacaa
     5041 agcatcacgt ttcgctttcc tgccg
//
LOCUS       DASWTX010000484         1726 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_417702, whole genome shotgun sequence.
ACCESSION   DASWTX010000484 DASWTX010000000
VERSION     DASWTX010000484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1726
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417702"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..593
                     /locus_tag="VGD38_07525"
     CDS             <1..593
                     /locus_tag="VGD38_07525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727899.1"
                     /translation="EGTLGRLFSDEALYNNLNATIRETQDVMTALRTGNGSAGRFIND
                     PALYNNANEIAVQLKGIADDLRAGRGTAGKLLTDDEFYTRINRTADRLDKSVDQINSM
                     IAEINSGRGTLGKLIRDEQMYNDARAAIARFNTTAERIDGMVAAAQRGEGTVGKLLQD
                     ETLYTNVNQLSSEGVKMLYDFRQNPRKYLTIKFELF"
     gene            654..>1726
                     /locus_tag="VGD38_07530"
     CDS             654..>1726
                     /locus_tag="VGD38_07530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727900.1"
                     /translation="MKRILLMALSLAVFAITATAQHGDHRHEPSEKLGTVNFPISCTP
                     KAQQQFNRAVAWLHSFEYEEAEKAFKEVAETDPKCGMAYWGIAMSNYHPLWAAPLPAE
                     MRRGMVAVVKAKTAGAQTQRERDYIAAMETFYKDSINPDNTVKGDHRTRVFAYHEAMK
                     RLHQNNPSDQEAAVFYALTLIATGMMSNDKTYVREKEAAKILNRVLARQPQHPGVAHY
                     LIHSCDFPALAHLALPAARTYAKLAPASAHAQHMPSHIFIRLGLWQEAIRSNRDAETS
                     AKAFAKRHNMPGAWDEQLHAMDYLAYGYLQRGQDKEAWAVLDEMLRIQSVQPQTFKVA
                     YSFAAIPARYALERKRWDEASKLT"
BASE COUNT          418 a          489 c          480 g          339 t
ORIGIN      
        1 gtgaaggcac actcggccgt ctcttcagtg atgaggctct ctacaacaac ctgaacgcca
       61 cgattcgcga aacgcaggac gtgatgacgg cgctgcgtac cggcaacggt tcggcgggaa
      121 gatttatcaa cgatccggcg ctctacaaca acgccaacga gattgcggtc cagttgaagg
      181 gcatcgccga cgatctgcgt gccggaagag gcaccgccgg caagttactc acggacgatg
      241 aattttacac gcgcatcaac cgcaccgcgg atcggctcga caagtcggtg gaccagatca
      301 actcgatgat cgccgagatc aattccggcc gcggaacgtt aggcaaactg atccgcgacg
      361 aacagatgta taacgacgcg cgcgcggcta tcgcccggtt caataccacc gcggaacgaa
      421 tcgacggcat ggtcgcggct gctcaacgcg gcgaaggcac cgtcggcaag ctgctccagg
      481 acgaaacgct ttatacgaac gtaaatcaat tgtcgtcgga aggcgtaaaa atgctttacg
      541 acttccggca gaatccgcga aaatacctga cgatcaagtt cgagctgttc taacaggttc
      601 gcgcttgtct tagtcacggc agtaagtttt ctcctccgga aaggaatgct tccttgaaac
      661 gcatcctctt aatggcgttg tctctcgccg tttttgcaat cactgcgacc gcacaacatg
      721 gagatcatcg tcacgaacct tcagaaaaac tcggaaccgt aaacttcccg atttcctgca
      781 cgccaaaagc acagcagcag tttaaccgcg ctgtcgcctg gcttcactcg tttgagtatg
      841 aagaagccga gaaggcgttt aaggaagttg ccgagaccga tccgaaatgt ggcatggcct
      901 attggggcat tgcgatgagc aactatcacc cactttgggc tgcgcccctc ccggctgaaa
      961 tgcggcgcgg tatggtcgcg gtagtaaagg cgaagactgc cggagcccaa acgcaacgcg
     1021 agcgcgatta catcgccgcg atggaaacct tctacaaaga ctctatcaac ccggacaaca
     1081 ccgttaaggg agaccatcgg acgcgtgtgt ttgcgtatca cgaggcgatg aaacggctac
     1141 accaaaacaa cccgtctgat caggaagcgg ccgtgtttta tgcgttgact ttgatcgcga
     1201 cgggcatgat gtcaaacgac aagacgtacg ttcgcgaaaa agaggccgcg aagattctga
     1261 atcgcgtgct cgcgcgacaa ccgcaacatc ccggcgttgc tcattacctg attcacagtt
     1321 gcgacttccc tgctctcgct catctcgcgc tgcctgccgc gcgtacttac gcgaagctcg
     1381 cgcctgcgtc tgcccacgcg cagcacatgc cttcgcacat ctttatccgt ctcggcttat
     1441 ggcaggaggc gatacgttcg aatcgcgatg cggaaacttc ggcgaaggcg tttgcaaagc
     1501 gacacaatat gccgggtgcg tgggacgaac agcttcacgc gatggactat ctcgcgtacg
     1561 gatatttgca acgaggacag gacaaagaag catgggccgt gctcgacgag atgctgagga
     1621 ttcagagtgt ccagccgcag acgttcaagg tcgcgtattc gttcgcggcg attccggcgc
     1681 ggtatgcgct cgaacggaag cgttgggatg aagcgagcaa gctcac
//
LOCUS       DASWTX010000485         3185 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_417710, whole genome shotgun sequence.
ACCESSION   DASWTX010000485 DASWTX010000000
VERSION     DASWTX010000485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3185
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417710"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..675
                     /locus_tag="VGD38_07535"
     CDS             <1..675
                     /locus_tag="VGD38_07535"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0727901.1"
                     /translation="RTKLLKVDHISKEYPTPAGPLKIVSDVSFELPPGSAVSIMGPSG
                     SGKSTLLYMIGALETPTSGTITLDDQNPFLLDAKKLAAFRNQRIGFVFQDHCLLPQCS
                     VIENVLTPTLVSSPNGSVTERARDLLTQVGLQERLGHHPAQLSGGEKQRVALARALIM
                     KPRLLLCDEPTGNLDQKSADVVAGMLLDIHRQANTILIVVTHSADLAARFPQRFELRN
                     QHLEPA"
     gene            675..>3185
                     /locus_tag="VGD38_07540"
     CDS             675..>3185
                     /locus_tag="VGD38_07540"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY0727902.1"
                     /translation="MRTSRLIQRSLAYYWQTNLVVVLGVAIAVAVLTGALLIGESVRG
                     SLRNLVSQRLGATDDFVASSNFFREGLATDLSQAGATCPLIALDGLVTHEPSRRRAGD
                     VRVYGVDERFWKFNGATAEAPQDRQVLLSESLAQELGTTTGDSILLRIEKPSDIPVES
                     LHGRKEDPGRTIRLNLKSVLPATALGEFSLRPQQGPVRAIFVSLPFLQKELDQPGKVN
                     TILVAAPQSADQNQRQQMPGTLLSLLKDKATLEDLGLKLRVLDEQKALSLESSSNIID
                     DTIANAAQESAAALSLKTYSVLSYLANSISAGDRSVPYSLVSAIDDNFLNTLTFTGLY
                     AFDSYTGLPSIFLNEWTMRELNAKVEDKITLEYYVWHEGGRLETAKADFTVLGTVEMS
                     GSGADRDLVPEYPGITESENMADWDPPFPIDLERVRQQDEDYWEKYRTIPKAFIPLKN
                     GQKLWQTRFGNLTSIRLQSTTGELTKDFVNPFQKALRQRLSPIQAGFQIVPVREQGLQ
                     ASRGATDFGEYFLYFSFFLVVSALLLTALFFKLGIEQRLREIGTLQALGFSASRIRRL
                     FLGEGVLLAIAGSLLGVLGAIGYAKLLMYGLTTWWVGAVGTTALTLHVSWQSMLIGVV
                     GGVLAAVVCVFITLRKVGSSSTRGLLLGDSPRGTRIFRIGIGAAVVGLVLLIVGALHV
                     IPQVAGFFGGGVLLLVASICFLHSWLRRRNRKPIHGTGWWTIWLLGFRNAAYRPSRTV
                     LCVTLIASAAFIIVAVDAFRRSGSASEDRKSGSGGFPIFAESLLPIVHDVNTPEGREA
                     LNLTTSNDAAAMQDLKFVNFRVRPGDDTSCLNLYQPRNP"
BASE COUNT          661 a          936 c          897 g          691 t
ORIGIN      
        1 agaacaaagt tgcttaaagt cgatcacatc tccaaggagt atccgactcc cgccggtcca
       61 ttaaagatcg tgagcgacgt gtcgttcgag ttgccgccgg gttcggcagt ctcgatcatg
      121 ggaccatccg gcagcggcaa gagcacgttg ctctacatga tcggcgcgct cgaaactccg
      181 accagcggaa cgatcacact cgacgatcaa aacccgtttc tgctcgacgc caaaaagctc
      241 gccgcgtttc gcaatcaacg catcgggttt gtctttcagg accattgcct gctgcctcag
      301 tgctccgtga tcgagaacgt gctgacacca acgctcgtca gttctccaaa cggttcggta
      361 acagaacgcg cgcgcgatct tttaactcaa gtcggtttgc aagagcggct cggccatcat
      421 ccggcgcagc tttccggcgg tgaaaagcaa agagtcgcac tcgcgcgggc gctgatcatg
      481 aagccacggc tattgttgtg cgacgagcct accggcaacc tcgatcaaaa atcagccgac
      541 gtcgtcgcgg gcatgttgct cgacattcat cggcaagcca acacgatcct gatcgtcgtc
      601 actcacagcg ccgatctcgc tgctcgtttt ccccagcgct tcgaactccg aaaccaacat
      661 ctcgaaccag cgtgatgcgc accagccgcc tgatacaacg cagtctcgct tactactggc
      721 aaaccaacct ggtggtcgta ctcggcgtcg cgatcgccgt cgcggtcttg acgggcgcgc
      781 tgctgatcgg cgagtcagtg cgcggcagtt tgcgcaatct cgtttcacag cgtctcgggg
      841 ccacggatga tttcgttgcg tcaagcaatt tcttccgtga aggattagct acggatttat
      901 cgcaggccgg cgcaacgtgt ccgctgatcg cgctcgacgg tttggtcaca cacgaaccga
      961 gccgccgccg cgccggcgac gttcgtgttt acggtgtcga cgaacggttc tggaaattca
     1021 acggcgcgac ggccgaagcg ccgcaagatc gccaggtgct gctgagtgaa agtctcgcgc
     1081 aagaactggg aacaaccacc ggcgattcaa tcctgctgcg gatcgaaaag ccttccgaca
     1141 ttccggtcga gtcgcttcac gggcgcaaag aagatcccgg acgcaccatt cgcctgaatt
     1201 tgaaatccgt ccttccggca acagctctcg gtgaattttc gttgcggccg cagcaaggcc
     1261 cggtgcgcgc gatcttcgtc tcgcttccgt tcttgcaaaa ggagttggac cagccgggca
     1321 aggtcaacac gatcctcgtc gctgcgcctc agtccgcgga ccagaaccag cgacaacaaa
     1381 tgccgggaac tttattgtcg ctgctcaaag acaaagcgac gctcgaagat ctcggcctca
     1441 agctgcgcgt tcttgacgaa caaaaagccc tgtccctcga aagcagcagc aacatcatcg
     1501 acgacaccat cgcgaatgca gcgcaggaat ccgccgccgc attgtcgctc aaaacatatt
     1561 cggtgctttc ctatctcgcc aatagcatca gcgccggcga tcgctccgta ccctactcac
     1621 tcgtttccgc catcgacgac aattttctga ataccctgac gttcacgggt ctgtatgcct
     1681 ttgacagtta taccgggtta ccgtcgatct ttctgaatga atggaccatg cgggaactga
     1741 acgcaaaagt cgaggacaag atcactctcg aatactacgt ttggcacgaa ggcggacggc
     1801 tcgaaaccgc gaaggcggat tttactgtgc tgggcaccgt tgagatgtcg ggctccggcg
     1861 ccgatcgaga tctcgttccc gaatatccgg gcattacgga gtcggaaaac atggcggact
     1921 gggatccgcc attcccgatc gatctcgaac gcgtgcgcca acaggatgag gactactggg
     1981 aaaagtatcg gaccattccg aaagccttca tcccgctgaa gaatggacag aaactctggc
     2041 aaacgcgctt cggcaacttg acgtctattc gtcttcaatc caccaccggc gaactcacaa
     2101 aagatttcgt aaatcccttc caaaaggcgt tacgccaaag gctttcaccg atccaggcgg
     2161 gcttccagat cgttcccgtt cgcgaacaag gactgcaagc atcgcgcggc gcaaccgact
     2221 tcggcgagta ctttctttac ttcagtttct ttctcgtcgt ctccgcgctg ctgctaaccg
     2281 ctctgttctt caaactcggc atcgagcaac gcctgcgcga gatcggaaca ttgcaagcgc
     2341 tcgggttttc cgcgtcacgc atccggaggc tgtttctcgg cgaaggcgtg ttactcgcga
     2401 tcgcgggcag cctgctcggc gtactcggcg cgatcggtta cgcgaagctg ttgatgtacg
     2461 ggttgacgac gtggtgggtc ggcgcagtcg gcacgacggc gttgacgctg cacgtttcgt
     2521 ggcagtcgat gttgattggc gtcgttggtg gagtgctcgc agcagtcgtt tgtgtattta
     2581 tcacgttaag aaaagtggga tcttcatcaa cgcgagggtt gttgttaggc gacagcccaa
     2641 gggggacaag gattttccgg atcgggatcg gagccgcagt cgtggggctg gtcttgctga
     2701 ttgttggcgc gttgcatgtg ataccgcagg ttgccgggtt ctttggcggc ggtgtgctgt
     2761 tactggtggc gagcatttgt ttcctgcaca gttggctgcg acgaagaaat cggaagccca
     2821 tccacggcac gggctggtgg accatctggc tgctcggctt tcgcaacgcc gcttatcgcc
     2881 cgagccggac agtgttgtgc gtcacgctga tcgcgtccgc ggcgtttatc attgtggcgg
     2941 tcgatgcatt tcgtcgcagc ggctcggcga gcgaggatcg caagtcgggc agcggcggtt
     3001 ttccgatatt tgctgagtcg ttgctgccga tcgttcacga cgtaaacacg cccgagggac
     3061 gcgaggcgct gaatctcacg accagcaatg acgccgcggc catgcaggat ctgaagtttg
     3121 taaactttcg cgttcgtccc ggcgacgaca cgagttgtct caacctttat caaccacgca
     3181 atcca
//
LOCUS       DASWTX010000486         2794 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_5645, whole genome shotgun sequence.
ACCESSION   DASWTX010000486 DASWTX010000000
VERSION     DASWTX010000486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2794)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2794
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5645"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(40..>2794)
                     /locus_tag="VGD38_07545"
     CDS             complement(40..>2794)
                     /locus_tag="VGD38_07545"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0727903.1"
                     /translation="PNQESVKEVQVSSTTYSAEDGRSSGAQIKVVSQNGTNDFHGSAF
                     FKYNSPKLNAFNKYPNDFGRGFHERVERFFRQFGGSLGGPIFLPNFGEGGPAVYSGRN
                     RAFFFVSYETLRENSTTPSTQYVETPQFRQAVIAARPNGVTAAILNSNGVQPRIAANL
                     APSCTDVLGSFPCQVVGGGLDIGSISGALGQYQTFGNLGGGGLDGIPDIQKVVIGAPT
                     INRPKQYNARFDFTPNDNDQFTFSTYLTRAFFVGSDTGAAGRQQADITSSPNNNAFTG
                     LYNHIFSPRLLNEVRFNFTQFKFNEVESSRETNFGIPRVEVEGMLTEGRRIRFGANQA
                     ETTPGIFSEKTFEFRDKVSYVRGNHGMSFGVDWRKELNDDNLNGASRPLYSFVGLFNL
                     ANDAPIFYQINADPRTGGVADAQRHFRSGGYGLFFQDDWKFRPNLTLNFGLRYEYFNV
                     LSERDDRVANFVFGPGGGLAGSRVEPTDELYNPDRNNFAPRFGFAWSPSRFRDKLVFR
                     GGAGIFYNRIEQVVFANTRGNPPFFARYAICCGTAPTDFGSPFAGGQIQYSLGASSSP
                     FSFPANPALAVGINPATGAPAGRTVEVYGALADTPVPYVYLYSFDIQYELPFQLAATV
                     GYQGSSSHGLIRLVNQRFVQPVIPPDFFAFAVYIPTPDVNANFNAMNARLTRRFAQGF
                     QFDVLYRWSKSIDTLSNEGPGAVTNQTFPQDLRQERGPSDYDVRHNLAISGLWDIPFL
                     RNRRDFIGKAFGGWQLDGILSAHTGFPWTPHTGQCVRAPGSQDFVCPSRPPRYFGGAL
                     EDTDNEAFIRPGGNFPGGGLLYFDPNNPQGTLLPGIGRNSFRGPRYFSVDMSLGKRTG
                     LPSVLGEASFLEVKANFFNIFNNLNLAPFGFFSPNIDSPDFGRARGALAGRVVEFQAR
                     FNF"
BASE COUNT          626 a          792 c          819 g          557 t
ORIGIN      
        1 gaaagttagg agtattaagt tgattcgtct catctgtggt taaaagttaa accttgcctg
       61 aaactcaaca acgcggcccg cgagcgcacc gcgcgcacgt ccaaaatccg gactgtcgat
      121 gttcggcgag aagaaaccga acggcgccag attcaggttg ttgaagatgt tgaagaagtt
      181 tgccttgact tccaaaaagc tcgcttcacc gagaacactc ggcaggccag tgcgcttccc
      241 aagactcatg tcgaccgaga agtatcttgg accacgaaac gaattgcggc cgatgcccgg
      301 cagcaacgtc ccctgcgggt tgttcggatc gaagtaaagt aggccgccgc cggggaagtt
      361 tccgcccgga cgaatgaatg cttcgttatc cgtgtcttca agcgcgccgc cgaaatagcg
      421 cggcggacgt gacggacaaa caaagtcctg cgaacccggc gcgcgcacgc attgaccagt
      481 gtgcggcgtc cacggaaaac cggtgtgagc ggaaagtatg ccgtctaact gccaaccgcc
      541 gaacgctttg ccgatgaaat cgcggcgatt gcgcaaaaac ggtatatccc acaaacccga
      601 gatcgcaaga ttgtgccgca cgtcgtagtc tgatggacca cgttcctgac gcaggtcctg
      661 cgggaacgtt tgattagtca ccgcgcccgg accttcgttt gacaacgtat cgatgctctt
      721 ggaccagcga tacagcacgt cgaactgaaa gccctgcgcg aagcgacgcg tcagccgcgc
      781 gttcatcgcg ttgaagtttg cgttcacgtc cggtgtcgga atgtagaccg cgaaagcgaa
      841 gaagtcgggc gggatcaccg gctgcacgaa tcgctggttg actaagcgaa tcagcccgtg
      901 actcgagctg ccctggtaac cgacagtcgc tgcgagttga aacggcaact cgtactgaat
      961 gtcgaacgag tagagataaa catacggcac cggcgtatca gcaagcgcgc cgtaaacctc
     1021 aaccgtacga cctgccggcg cgcccgtcgc cggattgatg ccgaccgcga gcgccggatt
     1081 tgccgggaag ctgaagggcg aagagctcgc gccgagcgag tattgaattt ggccgcccgc
     1141 gaacggtgaa ccgaagtccg tcggcgcggt gccgcagcag atcgcgtaac gcgcgaagaa
     1201 cggcggattg ccgcgcgtgt ttgcgaaaac tacctgttcg atgcggttgt agaaaatgcc
     1261 cgcgccgccg cgaaacacca gcttgtcgcg aaaacggctg ggactccacg cgaatccgaa
     1321 ccgcggcgca aagttgtttc gatccgggtt gtaaagttca tccgtcggtt ctacgcgcga
     1381 accggcaagg ccaccgcctg gtccaaagac gaagttcgcg acgcgatcgt cacgctctga
     1441 gagcacgttg aaatactcgt aacgcagtcc gaagttcagc gtcaggttcg gccgaaattt
     1501 ccagtcgtcc tgaaagaaca ggccatagcc gcccgatcgg aaatgtcttt gcgcatcggc
     1561 cacgccgccg gtccgcgggt cggcgttgat ctgatagaaa atcggcgcgt cgttcgcgag
     1621 gttgaagagt ccgacgaacg agtacaacgg ccgcgatgcg ccgttgagat tgtcgtcgtt
     1681 gagttccttg cgccaatcga cgccgaagct cataccgtga ttgccacgca cgtaactcac
     1741 cttgtcgcga aactcaaacg ttttctccga gaagattccc ggcgttgttt cagcctggtt
     1801 cgcgccgaag cgaatgcggc ggccttccgt caacataccc tcgacttcca cgcgcgggat
     1861 gccgaagttc gtttcgcgcg acgattccac ttcgttgaac ttgaactgcg tgaaattgaa
     1921 acgcacttca ttcaacagac gcggcgagaa gatatggttg tagagcccgg tgaacgcgtt
     1981 gttgttcggc gagctcgtga tgtcagcctg ttgccgtccc gcagcgccgg tgtcgctgcc
     2041 gacgaagaag gcgcgcgtaa ggtaggtgct gaaggtgaac tgatcgttgt cgttcggcgt
     2101 gaaatcgaac cgcgcgttgt actgcttcgg acggttgatt gttggcgcgc caatcacgac
     2161 cttctgaata tcgggaatgc cgtcgagccc gccaccaccg agattgccga acgtttgata
     2221 ctggcccaac gcgcccgaaa tcgaaccgat gtcgagtcca ccgccgacga cctggcacgg
     2281 aaaactgccg agaacgtccg tacatgaagg cgcgaggttt gcggcgatac gcggctgaac
     2341 gccgttgctg ttgagtatcg ctgccgtcac gccgtttggt cgcgcggcaa tcactgcctg
     2401 acgaaactgt ggcgtctcga catattgcgt tgacggcgtg gttgagtttt cgcgaagagt
     2461 ctcgtacgac acgaagaaga acgcacggtt tctgccgctg taaactgctg gtccaccttc
     2521 gccgaagttc ggcagaaaga ttggaccacc gagactgccg ccaaactgcc tgaagaaacg
     2581 ttcgactcgc tcatgaaagc cgcggccaaa atcattcgga tacttgttaa aggcgttgag
     2641 cttgggactg ttgtacttga agaaagcgct gccgtgaaaa tcattcgtgc cgttctgtga
     2701 aactactttg atctgcgcgc cggaactgcg gccatcctcc gcggaatacg tcgtcgaaga
     2761 aacctgaact tcttttaccg actcctggtt gggc
//
LOCUS       DASWTX010000487         4446 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_312127, whole genome shotgun sequence.
ACCESSION   DASWTX010000487 DASWTX010000000
VERSION     DASWTX010000487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4446
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_312127"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            125..868
                     /locus_tag="VGD38_07550"
     CDS             125..868
                     /locus_tag="VGD38_07550"
                     /inference="COORDINATES: protein motif:HMM:NF001030.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEY0727904.1"
                     /translation="MSGHSKWHSIKHKKGALDAKRGKLFTKFIKEITVAARSGGGDPD
                     ANARLRKAILDAKGGNMPNDTIERAIRRGTGEEEGVNYEEITYEGYGPGGVALLIQSM
                     TDNRNRTVAEIRHIFSKNGGNLGESGSVGWMFEKKGYIVVQKSAKSEEELFELAIEAG
                     ADDLRDDEDNFEIITSPDAFDAVLTAIKGAGIEPQVAEIEMVPQNYIRLEGGDARQML
                     KLMEALEDHDDVQKVSANFDISEADMAAA"
     gene            complement(914..>4446)
                     /locus_tag="VGD38_07555"
     CDS             complement(914..>4446)
                     /locus_tag="VGD38_07555"
                     /inference="COORDINATES: protein motif:HMM:NF028476.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="protein ndvB"
                     /protein_id="HEY0727905.1"
                     /translation="TRTREIELTSYAEVVLNAPGADAAHQAFSNLFIETEFIAGENAI
                     LAHRRRRSSEERPIWGIHVVVVEGDSVGAIQYETDRGRFLGRGRTASNPIAVMEDRPL
                     SNTTGAVLDPVFSLRRRVRIQPNQTVSCSFSTAVAHSREEALALADKYHDPNIFEREL
                     RLAWTKAQVEMSHLKIDAEEAHLFQRLAARIIYSDPSLRPTPHVLALNTKSQSSLWAH
                     GISGDLPIIVVRLDKAADLPTVKKLVRGHEYLHYKGLRCDLIVLNDTPTSYMEPLHKE
                     IETIVRTGGLQGLQDKPGGVYLRRADQIPEADRILLHAVARVVIVADRGSFEAQIERR
                     RVEEPLPPMLMPRQAPQTYPEPTMAPPELSFFNGLGGFHQGGREYVTLLGAEQWTPAP
                     WSNVIGNSVDFGFQVTETGGGYTWSVNSRENRLTPWSNDAISDPPGEVIYLRDEDSGT
                     VWSATPLPIREREPYIVRHGQGYSVFEHTSHGVSQELLLFAPLDASVKISLLRLRNRT
                     GRKRRFTIMSYNELVMGVSRSSSAPYIITEIDKPASTVFARNPYNNEFADLVAFVATS
                     EKISSATCDRKEFIGRNGSLDAPAALRRVGLGGRDGAGLDPCAAIQISIELAPHEARE
                     VVFLIGEAESKEAAQTLVSTFRQTANVNAAFEKVLNHWDELLGTVEVRTPDHALDTML
                     NRWLLYQTLSCRVWARTAFYQSGGAFGFRDQLQDVLALVYSRPEITRKQILLASAHQF
                     KEGDVQHWWHPPSGRGVRTTISDDLLWLPFVTAFYINVTGDVSVLDEVVPFVEQPLLG
                     EGELESYRQPEVSTESASIFEHCARALDRSLKVGEHGLPLMGGGDWNDGMNRVGHLGK
                     GESVWLGWFLYHALALFTPHVEARKEDERARAYREHLDHLKKALEEKGWDGDWYRRAY
                     FDDGTPLGSARNEECRIDSIAQSWSVISGASDPFRMGRAMAAVEEFLIRRGDGLVILF
                     TPPFDRGSLDPGYIKGYVPGVRENGGQYTHAAIWTLIAYALLGDGERAGELFALLNPI
                     NHSSTRAGLHKYKVEPYAAAGDVYAVPPHTGRGGWTWYTGSAGWMYRAGLESIIGFKL
                     QSNRLEIDPCVPRWWRDFEITYRRERAVYRIKVENPLGVSRGVVSIEVDGKIQPSIEL
                     IDDEKTHTVRVVMGEPVRTEETELATDTHG"
BASE COUNT          893 a         1330 c         1338 g          885 t
ORIGIN      
        1 ccgcggataa acgtggatga aatccggatt ttatccgtgt catccgtggg tcatgctgct
       61 tgcggctgcc gcattgtgat atattttcgt ccctgacgac ccattccaga aggattcaac
      121 tcaaatgtcc ggacattcga aatggcatag tatcaagcac aagaaaggcg cgctcgatgc
      181 caagcgcggc aaactgttca cgaagtttat taaggaaatc accgtcgcag cgcgttccgg
      241 cggtggagat ccagatgcca atgcgcgttt gcgcaaggcg atccttgatg ccaagggcgg
      301 aaatatgccc aacgatacga ttgaacgcgc gatccgtcgt ggcaccggtg aagaagaggg
      361 cgtcaactac gaagagatca cttacgaagg ttatggtccg ggtggggtgg cgctgctgat
      421 ccagtcgatg accgataatc gtaaccgcac ggtcgccgag atacggcata tcttttccaa
      481 gaacggcggg aacctcggcg agagtggctc ggtcggttgg atgtttgaaa agaagggcta
      541 catcgtcgtt cagaagtcgg cgaagtcaga agaagagctc ttcgagctcg cgatcgaagc
      601 cggcgcagac gacttgcgcg acgacgaaga caatttcgag atcatcactt cgcccgacgc
      661 tttcgacgcg gtgctcacgg cgatcaaagg cgcggggatc gaaccgcagg tagcggagat
      721 tgaaatggtg ccgcagaact acattcgcct cgaaggcggc gacgcgcggc agatgttgaa
      781 gttaatggaa gcgctcgaag atcacgacga cgtgcagaag gtttcggcga acttcgacat
      841 cagcgaagcc gacatggccg cggcctaggg ccgcggggat caaaagcgga ctgccggaga
      901 ggatttacgc agattatccg tgagtgtcag tagctagttc ggtttcttcg gtgcgaaccg
      961 gttcgcccat aacaacacgt acagtgtgag tcttctcgtc gtcgattagt tcgatgctgg
     1021 gttggatctt cccgtctact tcgatactca cgactccccg actcacgccc aacgggtttt
     1081 ccactttgat ccggtagacc gcgcgctcgc ggcggtaagt gatctcgaag tcgcgccacc
     1141 aacgcggcac acacggatcg atctccagac gattgctctg aagtttgaag ccgattatcg
     1201 actcgagccc cgcacggtac atccagcccg ccgaacccgt gtaccacgtc caaccgccgc
     1261 gtccggtgtg tggcggcacc gcgtaaacgt cgccggccgc agcgtagggt tcgactttgt
     1321 acttgtgcag tccggcgcgt gtcgacgagt gattgatcgg attgagcaac gcgaacagtt
     1381 cgcccgcacg ttcgccatcg ccgagcaaag catacgcaat caaggtccag atcgcggcgt
     1441 gcgtgtactg cccgccgttc tctcgcacgc ccggaacgta gcctttgatg taacccggat
     1501 cgagactgcc tcgatcaaac ggcggcgtga acagaatcac gagaccatca ccgcgccgaa
     1561 tcagaaactc ttcaaccgcc gccatcgcgc gtcccatgcg aaacggatct gacgcacccg
     1621 agatcacgga ccacgactgc gcgatcgaat cgatccggca ttcttcgttg cgcgccgaac
     1681 ccagcggcgt tccatcgtcg aaataagcgc gccgatacca gtcgccgtcc cagcctttct
     1741 cttcaagcgc tttcttcaag tggtccaggt gctcgcgata cgcccgcgcg cgttcgtctt
     1801 cctttcgcgc ttcgacgtgc ggcgtgaaaa gcgcgagtgc gtgatacaga aaccatccca
     1861 gccaaacgct ttcgcctttg cccagatggc ccacgcgatt catgccgtcg ttccagtcgc
     1921 cgccgcccat caacggcaac ccgtgttcgc cgactttcag actgcgatcg agcgcgcgcg
     1981 cgcagtgttc gaagatcgaa gccgactcgg tcgagacttc tggttgccgg taactttcca
     2041 gttcgccttc tccgagcagc ggttgttcga cgaagggaac gacctcgtcc aacacagaca
     2101 cgtcgccggt cacgttgatg tagaacgccg tgacgaacgg cagccagagc agatcgtcgg
     2161 aaatcgtagt gcgcacgccg cgtccgctcg gcggatgcca ccagtgttgc acgtcgcctt
     2221 ctttgaactg gtgcgcactc gcgagcagga tctgtttgcg cgtgatctcg ggacggctgt
     2281 agaccagcgc gagcacgtcc tgtaactggt cgcgaaaccc gaaggcgccg cctgattgat
     2341 agaaagccgt gcgcgcccag acgcggcacg acagtgtttg ataaagcagc cagcgattca
     2401 gcatcgtgtc cagcgcatga tccggtgtgc gcacctcgac ggtgccgagc agttcgtccc
     2461 aatgattgag aactttttca aatgcggcgt tgacgttcgc tgtctggcga aaagtcgaga
     2521 cgagcgtttg cgctgcttct ttcgactcag cttcaccgat caggaacacg acttcgcgcg
     2581 cttcatgtgg cgcgagctcg atactgatct ggatcgccgc gcacggatcg agtccggcgc
     2641 catcgcgccc gccgagtccc acgcgcctca gcgccgcggg cgcatcgagc gaaccgttgc
     2701 ggccgataaa ctccttgcga tcgcacgtcg cgctggagat cttttcactc gtcgcgacaa
     2761 acgcaaccag atcggcgaac tcgttgttgt acggattgcg cgcgaagacc gtcgatgcgg
     2821 gtttatcgat ctcggtgatg atgtacggcg cggacgacga acgcgagacg cccatcacca
     2881 gttcgttgta gctcataatc gtaaagcgcc gcttgcggcc ggtgcgattg cgcaaacgca
     2941 gcaaagagat cttcactgac gcatcgagcg gcgcgaagag caacaactcc tgcgagacgc
     3001 cgtggctcgt gtgttcgaag acgctgtagc cctggccgtg cctgacgatg taaggctcgc
     3061 gttcgcggat cggtagtggc gttgccgacc agacggtgcc ggagtcttcg tcgcgcaggt
     3121 aaatgacctc gccgggcgga tcgctgatcg cgtcgttgga ccacggcgtc aaacgattct
     3181 cacggctgtt caccgaccac gtgtaaccgc cgccggtttc cgtaacctga aaaccgaaat
     3241 cgactgagtt gccgatcacg ttggaccacg gcgctggcgt ccattgttcg gcgccgagca
     3301 gcgtcacgta ttcgcgcccg ccctggtgaa aaccgccgag gccgttgaag aagctcaact
     3361 cgggcggcgc catcgtcggc tcgggatacg tttgcggcgc ctgtcgcggc atcagcatcg
     3421 gcggcagcgg ttcttcaacg cgccgccgtt cgatctgcgc ttcgaagctg ccgcgatcgg
     3481 ccacgatcac gacgcgcgcc acggcgtgca acaggatgcg atccgcttct ggaatctgat
     3541 cggcgcgtcg caagtaaacg ccgccgggtt tgtcctggag tccctgcaag ccgccggtgc
     3601 gcacgatcgt ctcgatctct ttgtgcagcg gttccatgta actcgtcggc gtgtcgttga
     3661 gaacgatgag gtcgcagcgc agtcctttgt aatgcagata ttcgtgaccg cggacgagct
     3721 ttttgacggt cggaagatcg gcggctttgt cgaggcgcac gacgatgatg ggtaagtcgc
     3781 cgctgatgcc gtgcgcccac agactcgact gcgacttcgt gttgagcgcg agaacgtgcg
     3841 gcgtgggccg cagcgacgga tcggaataga tgatgcgcgc cgcgagacgt tggaagagat
     3901 gtgcttcttc cgcgtcgatc ttgaggtggc tcatctcgac ctgtgccttg gtccaggcga
     3961 gacgcagttc gcgttcgaag atgtttgggt cgtgatactt gtcggcgagc gcgagcgctt
     4021 cctcgcgcga atgtgcgacc gcggtgctga acgaacagct cacggtttgg ttcggttgaa
     4081 tcctcacgcg gcgccgcaaa ctgaacaccg gatcgagcac cgcgccggtc gtgtttgaaa
     4141 gcggacgatc ctccatcacc gcaatcggat tactcgccgt gcgcccgcgc ccgagaaaac
     4201 gtccgcgatc ggtttcatac tgaatcgcac cgacagaatc accctcgacg acgacgacgt
     4261 gaatgcccca aatcggacgt tcctcgctcg aacgccgccg gcggtgcgcg aggatggcgt
     4321 tctcgccggc gatgaactcg gtctcaatga agagattgct gaacgcctgg tgcgccgcgt
     4381 ctgctccggg tgcgttgagc acgacttccg cataactcgt caactcgatc tcgcgcgtgc
     4441 gtgttg
//
LOCUS       DASWTX010000488         2359 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_5658, whole genome shotgun sequence.
ACCESSION   DASWTX010000488 DASWTX010000000
VERSION     DASWTX010000488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2359
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5658"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2359)
                     /gene="bamA"
                     /locus_tag="VGD38_07560"
     CDS             complement(<1..>2359)
                     /gene="bamA"
                     /locus_tag="VGD38_07560"
                     /inference="COORDINATES: protein motif:HMM:TIGR03303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HEY0727906.1"
                     /translation="TIKELLSAAGHPNATIEERTEEVSATSLAIEFVIDEGDRVRVVE
                     IQFEGNQVFSDGSLRGAMRFVKEAGLITRFKGSDILDREKLEYDLRLVDNYMRSKGYL
                     QARHGEPRVESIGPRRTGFPILPLPFLSSVDEGLRITVPIVEGKVYRLGEFKVEGNSI
                     FSEQQIRAVIGLNQGDIADGEKVSKGLFENLKKFYGQQGFIEYTAEPVPTFKDNPQNP
                     NEGIVDFTVTIEEGKQFTLRRLEFVGNTFTRDNVLRREVLINEGDIYNDAYWEYSVVK
                     LNQLGYFNPIDKDKDVDRRTNDEDATVDLSLKVSERGRQQISFNGGISGIGGSFFGLE
                     YSTNNLLGRGEVLSFNLAAGNRQRSFQFSFTEPYIKDRPISAGFSLFAFSQKFFGEGT
                     FLSQNLSAQEDLLTGGFNFNDIDEQNLFTRDSYGGSIYVSAPLSEFYRKRRFTQFSRV
                     GASYQLSLSSVKDPEANTDPSNPSRFIPVIYSQPNILTSRGTLTFSYDTRNASIDPTS
                     GRELSAAIALAGLGGDVRTYQPTLSYTQFFPMRRKKSPRPEVFGFRIIAGTVGSFATT
                     SKVREANSLAFIDGVPIFERFFLGDEFTIRGYNVRSISPIAPVDTFITSQNVVVAENA
                     TGNPVVIPGLPQAAAAFGTFTGASGANVAALPRSFTSVGGDTQILANLEYRIPIISDT
                     VSIAAFADIGSAFNLRSNTDQTFSSNFLPDQPFLSTVGGVTCDRFRVAGFPFQVPISL
                     SSLALCNNPNLAASGFFSLVARDNRIISQGELEDARRLTDNDPITG"
BASE COUNT          494 a          682 c          690 g          493 t
ORIGIN      
        1 cccgtgatcg gatcgttgtc agtcaacctc cgcgcgtctt cgagttcgcc ctggctgatg
       61 atgcggttgt cacgcgccac cagactgaag aacccggacg ccgccagatt tgggttgttg
      121 cacagcgcca gcgaactcaa gctaatcggc acctggaacg ggaatcccgc gacccgaaag
      181 cgatcgcagg taaccccacc gacggtcgag agaaacggct ggtctggcag gaaattactc
      241 gagaacgtct gatcggtatt gctccgcagg ttgaatgcac tgccgatatc cgcaaatgcc
      301 gcgatgctga cagtgtcgct gatgatcggg attcgatatt caaggttcgc aaggatctgt
      361 gtgtcgccgc cgaccgaggt gaacgaacgc ggcaacgccg cgacattggc gcctgatgcg
      421 ccggtaaacg tgccgaacgc cgcggcggcc tgcggcagcc ccggaatcac gaccggattg
      481 cccgttgcgt tctccgccac cacgacgttc tgcgacgtga tgaacgtgtc gaccggagcg
      541 atcggactga tcgaacggac gttgtaaccg cgaatcgtaa actcgtcgcc caggaagaac
      601 cgctcgaaga tcggcacacc gtcgatgaac gccagcgagt ttgcttctct gactttactc
      661 gtcgtcgcaa aacttcccac ggtgccagcg atgatgcgga agccaaagac ttccggccgg
      721 ggcgatttct tccggcgcat cgggaagaac tgcgtgtagg acagcgtcgg ctgatacgtt
      781 ctgacgtcgc cgcccaaacc ggcgagcgct atcgcggccg acagttcgcg tccgcttgtt
      841 gggtcaatac tcgcgttgcg cgtgtcgtac gagaacgtca atgtgccgcg gctcgttagg
      901 atgttcggct gactgtagat cacgggaatg aaccgcgacg ggttcgacgg gtccgtattc
      961 gcttccggat ctttcacgct cgaaagcgag agttgatacg aagcgccgac gcgcgaaaac
     1021 tgcgtgaagc gccgcttccg gtagaactca gaaagcggag cactgacgta gatcgatccg
     1081 ccgtacgaat ctctcgtaaa caggttttgt tcgtcgatgt cgttgaagtt gaacccaccg
     1141 gtgagcagat cttcctgtgc gctgaggttc tgcgaaagga acgtcccctc gccgaagaac
     1201 ttctgcgaaa acgcgaagag cgagaagccg gcgctgatcg gccggtcttt gatgtacggc
     1261 tcggtgaatg aaaactggaa cgagcgctgg cgattgcccg ctgcgaggtt gaacgaaagc
     1321 acctcgccgc ggcccagaag gttgttggtc gagtattcaa gaccgaagaa cgaaccgccg
     1381 atgcccgaga taccgccgtt gaatgagatc tgctgacggc cgcgttcgct gaccttcaac
     1441 gagagatcga cagtcgcgtc ttcatcgttc gtgcggcgat cgacgtcttt gtctttgtcg
     1501 atcggattga agtagccaag ctggttcagt ttgacgaccg agtattccca gtaggcgtcg
     1561 ttgtagatgt cgccttcgtt gatcagcact tcgcggcgga gcacgttgtc gcgcgtgaac
     1621 gtgttgccga caaactccag ccgccgcaac gtaaactgtt ttccttcttc aatcgtgacg
     1681 gtgaagtcga caatgccctc gttcgggttc tgcggattgt ctttgaatgt cggaacgggt
     1741 tcggcggtgt actcgatgaa accctgctgg ccgtaaaact tcttcaggtt ctcgaaaaga
     1801 cccttactga ctttctcgcc gtcggcgatg tcgccctggt tcaaaccgat gaccgcgcgg
     1861 atctgctgtt cggagaagat cgagttacct tcgactttga actcgcccag ccggtagacc
     1921 ttgccttcga caatcggaac cgtgatgcgc aatccctcgt cgacagacga cagaaacggc
     1981 aacggcagga tcgggaaacc cgtgcggcgc gggccgatgc tctcgacgcg cggctcaccg
     2041 tgacgcgcct gcaagtagcc tttcgaacgc atgtagttgt cgacgagccg caggtcgtat
     2101 tcgagcttct cgcggtcgag aatgtctgag cctttgaaac gagtgatcag acccgcttcc
     2161 ttcacgaacc tcatcgcacc gcgcaaagag ccgtcgctga aaacctggtt accttcaaac
     2221 tgaatctcga ccacacgaac gcggtcgcct tcgtcgatca caaactcgat cgccagcgag
     2281 gtcgccgaaa cttcttcagt ccgctcttcg atagtcgcat tcggatggcc ggcggccgaa
     2341 aggagttcct tgatcgttc
//
LOCUS       DASWTX010000489         2859 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_377318, whole genome shotgun sequence.
ACCESSION   DASWTX010000489 DASWTX010000000
VERSION     DASWTX010000489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2859)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2859)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2859
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_377318"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2399)
                     /locus_tag="VGD38_07565"
     CDS             complement(<1..2399)
                     /locus_tag="VGD38_07565"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEY0727907.1"
                     /translation="MRDDADKSRLLLELNNALISQLDLEALLRSIFDLVKQVFDQTIA
                     ATLSLHDPQTNELRIHLLHSDDPDLFREGMVLSLDNTPSGVAFSKRQTVLIEKLVYED
                     FPSPLIERALADGIKSGCSVPLISNNRVVGALTVGAGTEGAFSEEDAALLTQVGKQIA
                     MPIENALNIRLAKRESDRNQLLHEVGQAIVSTLSLNELFKTISQSLRRFINHDMASVV
                     LLDQETNQLRVHTLDRPPVNILGEGTVIPMDGTPAGLCISTRKTIRRDKVNFEEFHVP
                     EMRIAYAAGLRSGCSVPLISHDKVFGAINVGAMREAGFSAEDAELLEQIAGPVAIAVE
                     NALNIQHAERERDRFQLMLEINNAVVSHLDLQHLVKSISASLQDIVPHDSAGIALYEP
                     EFNHLREYSNVSYKDVNAFRVGDTIPLDGTPAGQVFVTGESLLVKHPDVEQYPADRYS
                     MLQEEASPKSACLVLLSTHGRKLGIAGVSSTQPNHFTQKDLELFEHVSDQIAIAVENS
                     LNYERANRERVRAQMLLEINNAITTNLDLNDLIQATSACLRNYFQHDFAGVALWDDEK
                     NQMSVHSIDLSEPNKYLVEGKVFPMEGTLTGLSFTSRQPIVRNRFDPDESSWSLSRKF
                     YEEHGLKAMCFIPMIWGERAVGVLNLGCRREDAFSESDVELLTHIAGQVAIAFQNSMN
                     FQRATKATERTQTLLDASNAIAKNLDLRELLRTTSACLRRYFNHDVTALALYDEDTNK
                     LMVHGIDRNDHGRFAAEGTAFPLEGSPLADAFTSGEPILEWRIDNEKDRGPQMKSAYD
                     AG"
     gene            complement(2467..>2859)
                     /locus_tag="VGD38_07570"
     CDS             complement(2467..>2859)
                     /locus_tag="VGD38_07570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727908.1"
                     /translation="TADKFGYEIVPIVGVELGRTYRVRDPKQFAGTSRNVRRFYFGAS
                     MTFDLTRFVELSLADLFYVRGENPKDRTENYFAGSIEVPLGQIGDLNAAHALFLSFER
                     GEQAPFTNPSVNILKFGYRIRARGFLIR"
BASE COUNT          591 a          789 c          833 g          646 t
ORIGIN      
        1 cccgcatcgt acgcagactt catctgcggg ccgcgatcct tctcattatc aatgcgccac
       61 tcgagaatcg gctcgccgct cgtaaacgca tccgccaacg ggcttccttc cagcggaaac
      121 gccgtgcctt cggcggcaaa acgaccgtgg tcgttgcgat cgataccatg gaccatcagc
      181 ttgttcgtgt cttcgtcgta aagcgcgagc gcggtgacgt cgtgattgaa gtagcgccgc
      241 aaacacgctg aagtcgtgcg taacagttcg cgcaagtcga ggttctttgc gatggcatta
      301 ctcgcatcga gcagtgtctg cgtgcgctcg gttgctttcg tcgcacgctg gaagttcatg
      361 ctgttctgaa aagcgatcgc cacctgtccc gcgatgtgtg taagcagttc aacgtccgac
      421 tcgctgaacg catcttcacg gcggcaaccg agattcagca cgccgaccgc gcgctcaccc
      481 cagatcatcg gaatgaagca catcgccttc aggccgtgct cttcataaaa cttgcgcgag
      541 agcgaccacg acgactcatc gggatcgaac cggttgcgaa cgatcggctg gcgtgaggtg
      601 aacgacaacc ccgtcaacgt gccttccatt ggaaacactt ttccttcgac gagatatttg
      661 ttcggttccg acaagtcgat ggaatggacc gacatctggt tcttctcgtc gtcccacaac
      721 gcgacgcccg cgaagtcgtg ttgaaagtaa ttgcgcaaac aggctgacgt cgcctgaatc
      781 aggtcgttca aatcgagatt ggtcgtgatc gcgttgttga tttcgagcag catctgcgcg
      841 cgcacacgct cacggttcgc gcgctcgtag ttcaaactgt tctccaccgc gatcgcaatc
      901 tggtccgaga cgtgctcgaa gagttcgaga tctttttggg tgaagtggtt cggctgcgtg
      961 ctgctcacgc cggcgatgcc gagctttcgt ccatgcgtgc tgagcaggac caggcaggcg
     1021 gacttcggac tggcttcctc ttgaagcatc gagtagcgat ccgccggata ttgttccacg
     1081 tccggatgtt tgacgagaag cgattcgcct gtgacgaaga cttgtcccgc cggtgttcca
     1141 tcgagcggaa tcgtgtcgcc cacgcgaaac gcattgacgt ctttgtagga gacgttgctg
     1201 tactcgcgca gatgattgaa ctcgggttcg taaagcgcga taccggctga gtcgtgcggc
     1261 acgatgtctt gcaaactggc ggagattgac ttcaccaggt gctgaagatc gaggtgcgag
     1321 acgacagcgt tattgatctc gagcatcagt tggaaacgat cgcgctcgcg ctcggcgtgc
     1381 tgaatgttga gcgcgttttc gacggcaatc gcgactggcc cggcgatctg ttcgagtagt
     1441 tccgcatcct ccgcactgaa acctgcttca cgcattgcgc ccacattaat cgcgccaaac
     1501 accttatcgt gcgagatgag cggcaccgaa cagccggaac gcagacccgc ggcgtaagcg
     1561 atgcgcatct cgggaacgtg gaattcttca aagttgacct tgtcgcggcg gatggtcttg
     1621 cgcgtgctga tgcacagtcc ggctggcgtg ccgtccatcg gtatcactgt tccttcgccg
     1681 aggatgttga ccggcggacg atccagtgtg tgcacgcgca gttgattggt ttcctgatcg
     1741 agcagcacaa cgctcgccat gtcgtgattg atgaagcgcc ggagcgactg ggagatggtt
     1801 ttgaagagtt cgttcaggct gagcgtggag actatggcct ggccgacttc atgcaacagt
     1861 tgattgcgat cgctttcgcg ctttgcgaga cggatattga gcgcgttttc gatcggcatc
     1921 gcgatctgtt tgccgacctg cgtcagcagc gctgcgtctt cttctgaaaa cgcgccttcg
     1981 gtgccggcgc cgacggttaa agcgcccacg acacgattgt tggagatgag cggaacgctg
     2041 caaccggact tgatcccgtc ggcgagggcg cgctcgatca gcggcgaagg gaagtcttca
     2101 taaacgagtt tctcgatgag aaccgtttgc cgcttggaaa acgccacgcc gctgggcgtg
     2161 ttgtcgagcg agagcaccat tccttcgcga aagagatccg gatcgtcgga gtgcagcagg
     2221 tgaattcgta gttcgtttgt ttgtggatcg tgaagcgaga gcgtcgcggc gatggtttga
     2281 tcgaagacct gcttcaccag gtcaaagatc gagcggagta acgcttcgag atcgagttgc
     2341 gagatcagtg cgttgttgag ttcgagcagc agtctcgact tgtctgcatc gtctctcata
     2401 gggggcttac gcgtatcgga gtaggaccaa atatagcacg tcagccccgg agagcgatca
     2461 gcaacgttag cgaatgagaa atccgcgagc acgtattctg tagccaaact tcagaatgtt
     2521 gacgctcgga ttggtaaaag gcgcctgctc gccccgctcg aaggacagga acaaggcgtg
     2581 cgctgcattc aaatcaccga tttggcccaa gggaacctcg atcgagccgg caaaatagtt
     2641 ttcggttcga tccttcgggt tttctcctct gacgtagaac aaatcggcta acgacaactc
     2701 gacgaatctg gtcagatcga aggtcatcga ggcgccgaaa tagaatcgtc tgacgttccg
     2761 gctcgtcccc gcaaactgtt ttggatctct aacccgatac gtccgtccca gctcgacacc
     2821 gacgatcggt actatctcgt aaccgaactt gtcagccgt
//
LOCUS       DASWTX010000490         2158 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_5666, whole genome shotgun sequence.
ACCESSION   DASWTX010000490 DASWTX010000000
VERSION     DASWTX010000490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2158
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5666"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            149..1996
                     /locus_tag="VGD38_07575"
     CDS             149..1996
                     /locus_tag="VGD38_07575"
                     /inference="COORDINATES: protein motif:HMM:NF019351.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEY0727909.1"
                     /translation="MANISKIDRRAEKEKQQAAKNRREIIAAGLSRREMLRMGLLTSA
                     GLLIPMSGLSVRARTSAGRFLYDSGPGSGPSSPPTTPFVQPFVRMTVKQPSAVLNPTP
                     TVLPNTAAGEGRTIPHQAFNQFAPVKFYEVEQRLANIVTHPALPAQPLWGFDGLVPGP
                     LYVERYGAPVLVRNRNNLPANNGGFGKNLVTTHLHNGHTPAESDGNPCDFFRPGQFYD
                     QHYPNVLAGVNSTHQDTGGDIQEAMSTLWYHDHMHDFTSQNVYKGLAGMYLLFNDYDT
                     GDETTGFHLPSFGDGVSDDSNFDVPMVFSDHLYDSETGILTFDTFNFDGVLGDRFLVN
                     GKVQPVMHVHPRRYRFRWLDAGPSRFYQFFFTDTTNLNQRIKFHQISTDGNLLDRPVE
                     VESVRISVAERADVIIDFSKYAGKTLYIENRLEQVDGRGPTGKVLAAGQGNLILKIVV
                     DLPPIADDSVDPATITRFYGLPSKTATPRITRTFNFDRSNGNWTINGRSMDPECQEVR
                     ARVSKNSVEHWIVTNSSGGWQHPAHIHFEEFQFLSINGAPPASSGLVQNGRKDVIRLE
                     HNMHTKVFFRFRDFTGKYPFHCHNVVHEDHAMMLLWEIVEGDGDNRTNP"
BASE COUNT          458 a          681 c          607 g          412 t
ORIGIN      
        1 ttcatccggc ccgatgcctt catccgcgac gtaaaacgtg ccgacggcac cgccgtcttc
       61 ccggcactcg gccgcaactt ccgctgcctt caacaatcgg gcgactggtg taactaaaca
      121 ccagccaagg atcaaaagga gaacccctat ggcgaacatc tcgaagatcg atcgaagggc
      181 ggagaaggag aaacagcaag ccgccaaaaa caggcgcgag atcatcgcgg ccggcctgag
      241 ccgtcgcgag atgctcagaa tgggcctgct gacgagcgcc ggtttactga ttccgatgtc
      301 gggcctgagc gtccgcgcgc gcaccagcgc cggccgtttc ctgtacgaca gcggtccggg
      361 cagtggtcca agcagcccgc cgacgacacc cttcgtgcaa ccattcgtac gcatgaccgt
      421 gaagcaaccg agtgcggtct tgaatcccac gccgacagtg ttaccaaaca cggcggccgg
      481 cgaaggacgc accatcccgc atcaggcttt caatcagttt gcgcccgtca agttttatga
      541 agtcgaacag cggctggcga acatcgtcac gcatcccgcg ctgccggccc aaccgctctg
      601 gggctttgac ggtctggttc ctggaccact ttacgtcgag cgatacggcg cgccggtgct
      661 cgtccgcaac cgcaacaacc tgccggcgaa caacggcggc tttggcaaga acctcgtcac
      721 gacgcacctg cacaacggcc acacgcccgc tgagtcagac ggcaatccgt gtgacttctt
      781 ccggcccgga cagttttacg accagcacta tcccaacgtg ctcgcgggcg tgaattcaac
      841 gcaccaggac accggcggtg acattcagga agcaatgagc acgctctggt atcacgacca
      901 catgcacgac ttcacgtcgc agaacgttta caaaggtctc gccggcatgt acctgctctt
      961 caacgattac gacaccggcg acgagaccac cggttttcat ctgccgtcat tcggcgacgg
     1021 cgtcagcgac gacagcaatt tcgacgtacc catggtcttc agcgatcatc tttacgattc
     1081 tgagaccggc attctcacgt tcgacacttt caacttcgac ggtgtgctcg gcgatcgttt
     1141 cctcgtgaac ggtaaggtgc agccggtgat gcacgtgcat ccgcggcgtt atcgtttccg
     1201 ctggctcgac gctggtccat cgcgtttcta ccagttcttc ttcaccgaca cgaccaacct
     1261 gaaccagcgg atcaagttcc accagatctc caccgacggc aacctgctcg atcgtccggt
     1321 cgaggtcgag agcgtgcgta tctcggtggc tgagcgtgct gacgtgatca tcgacttctc
     1381 gaagtacgcg ggcaaaacgc tttacatcga gaaccgtctg gaacaggttg acggccgtgg
     1441 tccaacgggc aaggtcctgg ccgcgggaca gggcaatctg attctcaaga tcgttgtcga
     1501 cctgccgccg atcgccgacg acagcgttga cccggcgacg atcaccaggt tttacggttt
     1561 gccgagcaag accgcgacgc cgcgtatcac gcgcacgttc aacttcgatc gctcgaacgg
     1621 taactggacc atcaacggcc gctcgatgga tcccgagtgt caggaagtgc gggcacgtgt
     1681 ctcgaagaac tcggtcgagc actggatcgt cacgaacagt tccggcggtt ggcagcaccc
     1741 ggcgcacatt cacttcgaag agtttcagtt cctttcgatc aacggcgcgc cgccggcttc
     1801 cagcggtctt gttcagaacg ggcgcaagga cgtgatccgc ttggagcaca acatgcacac
     1861 gaaggtgttt ttccggttcc gcgacttcac cggcaagtat ccgttccact gccacaacgt
     1921 cgtgcacgag gaccacgcga tgatgctcct ctgggagatc gtcgaaggcg acggcgacaa
     1981 ccgcaccaac ccgtaagaaa ggagagcgaa catgtttagg aatacattta ctggactgct
     2041 tgcgcttgtc ctgcttgccg gtgtgacggt gcagcccgat ggtgcgcgcg cttttcaaag
     2101 tcagttcaag gtgacgaaga cgccgcgcga acggctggcc gagcggagtt ttcctaac
//
LOCUS       DASWTX010000491         2568 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_417805, whole genome shotgun sequence.
ACCESSION   DASWTX010000491 DASWTX010000000
VERSION     DASWTX010000491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2568
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417805"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1255
                     /locus_tag="VGD38_07580"
     CDS             <1..1255
                     /locus_tag="VGD38_07580"
                     /inference="COORDINATES: protein motif:HMM:NF013593.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY0727910.1"
                     /translation="LRNPERFSRLGGRVPRGILLYGPPGTGTTLLARAAAKEAGVAFL
                     AASGSSFQEKFAGLGAARVRHLFSKGRKLSPCIIFIDEIDALGRQRGRGGDSASADQD
                     QTLNQLLVEMDGFDQSSAVVVIASTNRPDILDKALTRPGRFDREIAVDLADVNGREAI
                     LNVHARNLKLEEGLDLQWIARGTPGFSGAELANLMNEAAIAATRDDAAAVGRAHVEVA
                     RDRILMGAERQGFMMDEDERYATAVHEAGHVAVGLAVENGDPIHKVSILPRGRALGVT
                     QSLPERDRFMKKREYLEDQIALLLGGRAAEQILLQTMTAGASNDIERAVEIARKMVSE
                     FGMSRLGPIHLGNSDQPISQNLLDRIEEATNELINTQLERACAIVTAEKDSIARLVEL
                     LMERDTLDSAEIASCFSNSPIVRAA"
     gene            complement(1264..2190)
                     /locus_tag="VGD38_07585"
     CDS             complement(1264..2190)
                     /locus_tag="VGD38_07585"
                     /inference="COORDINATES: protein motif:HMM:NF017807.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEY0727911.1"
                     /translation="MSQRFRPHLALIAVQLLFGVWPIIGKIVLRSMSVTSLVACRLVG
                     AAIAFALLQRQLKPLLKMPRQDFVLLVLCALTGVVGNQLLYVKALSLTTVINAALLTA
                     TIPVITLVVSILFRYDHWSLKRVAGIVLAGTGVVYLVNPTQAELTSETTMGNLLLLCN
                     ALCYAVYLVISKRLLERYGALNVITWIFVVSAVIVVPLGFYSFGNENVAAIGWTVWLL
                     VGLIILLPTVSAYYLNSWALTHVSPSTAAIYIYLQPLIAFGFAPLVLGERWSSRTAIA
                     TLLIFAGLALVTMPGRSRAVRDISEHPDALAH"
     gene            complement(2187..2495)
                     /locus_tag="VGD38_07590"
     CDS             complement(2187..2495)
                     /locus_tag="VGD38_07590"
                     /inference="COORDINATES: protein motif:HMM:NF012424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HEY0727912.1"
                     /translation="MAERARSKRLKPEEYTGATFSISNLGMFGIDEFTAVINPPEGAI
                     LAVGAMTPKPVVRDNEIVIRQIMRVTMSCDHRVIDGATGAKFLQTFKKILENPLYLVV
                     "
BASE COUNT          541 a          720 c          815 g          492 t
ORIGIN      
        1 tctacgtaat ccggaaaggt tcagccgtct gggcgggcgc gttccgcgcg gcattctgct
       61 ttacggcccg ccgggcaccg gcacaacgtt gctcgcgcga gcggctgcga aagaagcggg
      121 cgtcgcgttt cttgcggcat cgggatcgag ttttcaggag aagtttgccg gactgggcgc
      181 cgcacgcgtg agacatctct tttccaaagg acgaaagctt tcgccgtgca tcatctttat
      241 cgacgagatc gatgcgctcg ggcggcagcg tggccgtggt ggcgattccg cgtcagccga
      301 tcaggatcag acgttgaacc agttgctggt ggagatggac gggtttgacc agtccagcgc
      361 cgtcgttgtg attgcgtcga cgaaccggcc tgacatcctg gataaagcgc tgacgcggcc
      421 tggacgtttt gatagagaaa tcgctgtcga cttggccgac gtgaatggac gcgaagcaat
      481 tctcaacgtt catgcgcgca atctcaaact cgaagaaggt ctcgacctgc agtggatcgc
      541 gcgtggcact ccgggctttt cgggcgcgga gttggcgaac ctgatgaacg aagccgcgat
      601 tgcggcgacg cgtgatgatg ccgcggctgt tggccgtgcg cacgtcgagg ttgcgcgcga
      661 ccgcattctg atgggcgccg aacgccaggg cttcatgatg gacgaggacg agcgttatgc
      721 gaccgccgtt cacgaagccg gacacgttgc ggttggtttg gcggtcgaga atggcgaccc
      781 gattcacaag gtttcgatcc tgccgcgtgg acgtgcgctg ggtgtgacgc agtcgttgcc
      841 ggagcgcgat cggttcatga agaagcgcga gtatctggag gatcagatcg cgttgttgct
      901 cggtgggcgt gcggcggagc agatcctgtt gcaaacgatg actgccggtg cttcaaacga
      961 catcgagcgt gcggttgaga tcgcgcggaa gatggtgagc gagtttggca tgagccggtt
     1021 gggtccgatt cacctcggga actcggatca gccgatcagt cagaacctgc tcgatcggat
     1081 tgaagaagcg acgaacgagt tgatcaatac gcaacttgaa cgtgcctgtg cgatcgtcac
     1141 tgccgagaag gattcgattg cgcgtctcgt cgagttgctg atggagcgcg acacactcga
     1201 ctccgccgag attgcaagct gtttcagcaa cagcccgatc gtgcgcgcgg cttgatccgc
     1261 gttttagtgc gctaacgcgt cagggtgttc ggagatatcg cggaccgcac ggctgcggcc
     1321 gggcattgtt accagtgcca ggccggcaaa gatgagcagt gtggcaatgg cggtccgcga
     1381 gctccatcgc tcgccgagca ccaacggcgc gaagccaaac gcgattagcg gctgaagata
     1441 gatgtagatc gccgccgtgc tcggcgacac atgcgtcagc gcccaagagt taaggtagta
     1501 agcactcacc gtcggcaaca agataatcag acccaccagc agccacaccg tccaaccaat
     1561 cgccgccacg ttctcgtttc cgaacgagta aaaacccaac ggcacgacaa tcacggcact
     1621 caccacgaag atccacgtaa tcacgttcag cgcgccatag cgctcgagca gccgcttcga
     1681 aatcacgaga tacacggcgt agcatagcgc attgcagagc agcagcaggt tccccatagt
     1741 cgtttcggac gttaactccg cctgcgtcgg attgacgagg tagacgacgc cggtacccgc
     1801 cagcacgatg cccgcaacgc gcttcagcga ccagtggtcg taacgaaaga gaatacttac
     1861 gacgagcgtg atcacgggaa tcgttgccgt cagcagcgcc gcgttgatga ccgtcgttag
     1921 cgagagggct ttgacgtaga gaagttgatt gccgacaacg cccgtgaggg cgcacaggac
     1981 gagcagcaca aaatcctgcc gcggcatctt gagcagtggc ttgagttgac gttgtaacag
     2041 tgcgaaagcg atcgccgcac ccacgaggcg gcacgcgacg aggctcgtga ccgacatcga
     2101 gcgcaaaacg atcttgccga tgatgggcca gacgccgaag agtagttgaa ctgcgatgag
     2161 cgcgaggtga ggccggaaac gctggctcat accacgaggt agagcgggtt ttccaaaatc
     2221 ttcttgaatg tttgcaggaa cttcgcgccg gtagcgccgt cgataacgcg atgatcgcac
     2281 gacatcgtga cgcgcatgat ctgccggatg acgatctcgt tgtcacgcac gaccggcttc
     2341 ggcgtcatcg cgcccacagc caggatcgcg ccttcaggcg gattgatcac ggcggtgaac
     2401 tcgtcgatgc cgaacatgcc gaggttgctg atcgagaacg tcgcgcccgt gtactcttcg
     2461 ggcttcaacc ttttcgaacg cgctcgctcg gccagttcgc gtacctaagc agcgatctgg
     2521 ctgagtgact tttgatctgc cgcgcgaacc acgggtgtga tcaatcca
//
LOCUS       DASWTX010000492         4554 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_93003, whole genome shotgun sequence.
ACCESSION   DASWTX010000492 DASWTX010000000
VERSION     DASWTX010000492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4554
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93003"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1136)
                     /locus_tag="VGD38_07595"
     CDS             complement(<1..1136)
                     /locus_tag="VGD38_07595"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0727913.1"
                     /translation="MKASLFHNSAALVLLVLALGSFLVGQPLSEAHVNAPVSDLLITN
                     ARILDGSGNPWFRGDVAIRDRRIVRVGRVAPDTATKVIDARGQILAPGFIDVHTHVES
                     IYSLPAAENFVRMGVTSLITGNCGSSSTEVGEFLGRIKDKPLAVNLATLIGHGSVRRK
                     VIGLDDRAPTPDELKRMEAVMEQGMKDGAVGLSTGLIYVPGTYAKTDEIVALARVAAR
                     YGGLYATHMRNEGDKVADAIRESIQIGEEAGLPVEISHFKISNRKLWGQTPMTLGLVR
                     EARARGLAVTVDQYAYTASSTSLDARLPSWLRAGGFEEAKKRLADKATRETVINDTKD
                     ALKRSGFKDYSFAVVASYGPDKSFNGKSIAEITKIVRNKSDVTS"
     gene            1375..>4554
                     /locus_tag="VGD38_07600"
     CDS             1375..>4554
                     /locus_tag="VGD38_07600"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0727914.1"
                     /translation="MSRVSLLMAIVVALFATATTVIAQTSTSRITGRVADSKQASIAG
                     ANVTITNEATGVTQTQTTTEAGFYAFEALPVGIYTITVEQNGFKKFQKTGSHLEVNNP
                     LTVDVVLEVGQVSETVTVQGGPEQLQTANATIGNVVEQKAIETLPLNGRNPLTLLLLE
                     PGVVQRSAGAAGSGVHVNGARDRAYNVTIDGIEANESSVPNPVSNLYRINPDNVQEFK
                     VTTNNATAEEGRNSGASISIATRSGTSDFHGTWFYFLRNEALNANEWYANAQSAPKPL
                     IRMGQFGFELGGPIKRNKTFFFASYQYNRIDFTQPIDQTFGFPIVYTNEARNGIFRYF
                     VPDPANPLVIGGSTITRNSTLLVNPSTGALLVPLCATATSLRCIRVYDVKAALNNTAA
                     RPLDATIASLLTAYPSPNNFAAAGDGLNTATFLWNPPTAVRGPAISGRVDHNFNDNNS
                     IFVRYLWSDYNTLKGDPLNGRPQVYPDNPPQGEVFRRTSNLAIGWRRVISPRVVNEFT
                     AGFGRFGFLFTQGEANPIWPDVPPFNLNSVDDPYINTPRTARWVTTPQVLDNLSIVHG
                     EHVFRMGLNFRFYRHVDQRGQPGGINVTPSVTFSATTRPAFLGTTGNSGFRVAPNINS
                     TDQTLLGSLINNLYGLPASMNQVFISNLQDDAFLPFRVDDQITLYAEKHNLDQYNFFV
                     QDEWKVRPNLTLNYGARWEINPPANTSPQANVFVAATPIAGTPLPATPVVNQPGAVSF
                     VPAKRWYEGDFKWAIGPRFGLAYSPDFKSGFMRTLFGDGNKSVIRLGYGMAFDTISSF
                     QVTAAAGRIPGLVQSCTTSYNANAGAFTSITAGCVNSPDINKTVAGGFPTQLPAPSVK
                     PSSLLRPPQQLRTNAPPITVFAPRMQLPTVHEFNFSLQRELPWGLVAQAAYIGRRGTH
                     LFMAYDINQTNPDAILPSFLIMQQNRAKGCTPNGTGCPAGVTGVTPPLFNQLQTQGGL
                     TATQAASFINSTTTVSELDINGAGSFARRIEDNTLGLKLRPNQQFGVITYIDNSGDSN
                     YHAGQFTLRRRFSTGLGLSMSYTFGKSIDN"
BASE COUNT         1005 a         1381 c         1244 g          924 t
ORIGIN      
        1 tggctggtga cgtcagactt gttgcgcacg atcttcgtga tctcggcgat ggattttccg
       61 ttgaacgatt tgtcaggacc gtaagaggcg acgacggcga acgaatagtc tttgaaaccg
      121 ctgcgcttca acgcgtcttt cgtgtcgttg atgactgtct cgcgtgttgc tttatccgcg
      181 agacgtttct ttgcttcttc gaagccgccg gcgcgaagcc acgagggcaa gcgcgcgtcg
      241 agcgaagtcg agctcgcggt gtaggcgtat tgatcgacgg tgacggcgag tccgcgcgcg
      301 cgtgcttcgc gcacaagacc gagcgtcatc ggcgtctgac cccagagttt cctgttgctg
      361 atcttgaagt gtgaaatctc gaccggcagt cctgcttctt cgccgatctg aatactctct
      421 ctgatagcgt cggcaacctt gtcgccttcg ttgcgcatgt gagtggcgta caagccgcca
      481 taacgtgccg ccacgcgagc gagtgcgacg atctcgtcgg tcttcgcata cgtgcccggt
      541 acgtagatca atccggtcga caaaccaacg gcgccgtctt tcatcccctg ctccatgacg
      601 gcttccattc gtttcagctc atcgggagtc ggcgcacgat cgtcaagacc gatcaccttg
      661 cgccgcacag aaccgtggcc gatcagcgtt gcaaggttta ctgcgagcgg tttgtctttg
      721 atacgtccga gaaactcgcc gacttccgta ctcgacgaac cacagttgcc ggtaatgagc
      781 gaagtgacac ccatgcgaac gaagttctcg gcggcaggca ggctgtagat cgattcaacg
      841 tgcgtgtgaa cgtcgatgaa accgggcgcg agaatctgcc cgcgcgcgtc gatgactttc
      901 gttgcggtgt ccggcgcgac gcgtccgacg cgcacgatgc ggcggtcgcg aatcgcaacg
      961 tcgccgcgga accacgggtt gccgctgccg tcgagaatgc gcgcgttggt gatcagtaag
     1021 tcggagacgg gtgcattgac gtgggcctcg ctcaatggtt ggcccaccag aaagctgccg
     1081 agcgcgagca ccagcaggac aagcgcagca gagttgtgga agagactcgc cttcactact
     1141 ctcagtttcg gtccgtactt ctgaattcgc aatgattacc aggtgaagaa ccagattata
     1201 ggccgcaagc tggaataatc atagctaaag atttttattc gattgataaa aactcctgat
     1261 ggccggccgc gcccccggca ggcgcaaaaa ccttggaggt gaaacagcac ggcgatatac
     1321 tgcggccctc gcacatctct cgttacttaa ctcaaaacag acaggaggtc ctccatgtcg
     1381 cgcgtctccc tactaatggc catagtagtg gccctgtttg cgactgccac taccgtcatc
     1441 gcacaaacga gcacatctcg catcaccggc cgagtagccg attcaaagca ggcatcgatc
     1501 gccggcgcca acgtaacaat caccaacgaa gcaacaggag ttacacaaac acagaccacc
     1561 acggaggcgg gcttctacgc tttcgaggcg ctcccggtgg gtatctacac cataaccgtc
     1621 gagcagaacg gcttcaaaaa gtttcagaag accggaagcc atctcgaagt aaacaacccg
     1681 ctaaccgtag atgtagtgct ggaggtcgga caggtctcgg aaaccgtgac cgttcagggc
     1741 ggaccagaac agttgcaaac agccaacgct accatcggca acgtagtcga gcagaaagcc
     1801 atcgagactc tgccactcaa cggccgcaat ccgctcacgc tgctgttgct ggaaccgggc
     1861 gtggtccagc gttcggcggg cgcagccgga tccggcgtgc acgtcaacgg cgcgcgcgat
     1921 cgcgcttata acgtgacgat tgacggtatc gaagcaaacg agtcgagcgt tccgaatccg
     1981 gtttcgaatc tttatcgcat caatcctgat aacgtgcagg agttcaaagt aactacgaac
     2041 aacgcgacag ccgaagaggg gcgcaacagc ggtgcttcga tctccatcgc gacccgcagc
     2101 ggcaccagcg attttcatgg cacctggttt tacttcctgc gcaatgaagc gctgaatgcc
     2161 aatgagtggt atgcaaacgc gcagagcgcg cccaagcccc tcatcagaat gggccaattc
     2221 ggatttgagc tcggcggccc gatcaagagg aacaagacct tcttcttcgc cagctaccaa
     2281 tacaatcgca tcgacttcac gcaaccaatc gatcaaacgt ttggcttccc gatcgtctac
     2341 acgaacgaag cacgcaacgg aatatttcgc tacttcgttc cggacccggc caatccactg
     2401 gtgattggcg gcagcacgat cacgcgcaac tcgactctgc tcgtgaatcc aagcacggga
     2461 gcattgctgg tgccgttgtg cgcaacggcg acttcacttc gctgcattcg tgtttatgac
     2521 gtgaaagccg cactcaacaa cactgccgca cgtccactcg atgcaacgat cgcgagcctt
     2581 cttacggcct atccgtcgcc gaacaacttc gctgcggccg gcgacggcct gaacaccgca
     2641 accttcctct ggaatccacc gaccgcagtg agaggccccg cgatcagcgg gcgcgtcgat
     2701 cacaatttca acgacaacaa cagcatcttc gtgcgttacc tctggtccga ctacaacact
     2761 ctcaaaggcg atccgctgaa cggcaggccg caggtctatc ctgacaatcc gccgcaaggc
     2821 gaggtgttcc ggcgcacgtc caatctcgcg atcggttggc gccgcgtgat ctcgccgcgc
     2881 gtggtgaacg agttcaccgc cggcttcggt cgtttcggtt ttctcttcac gcagggtgag
     2941 gctaacccga tttggccgga tgtgccgccg ttcaatctca acagcgtcga cgacccgtac
     3001 atcaacacgc cacgcacagc gcggtgggta accacgccgc aggtgctcga taatctgagt
     3061 atcgttcacg gtgagcacgt gtttcgcatg ggcttgaact tccgttttta ccggcacgtg
     3121 gaccagcgtg gtcaaccggg cggaattaac gtgacgcctt cagtgacttt ctccgctacg
     3181 acgcgtcccg cgtttctcgg cacgaccggc aactcgggct tccgggtagc tccgaacatc
     3241 aactccacgg accagacact cctgggtagc ctgatcaata acctgtatgg cctaccggct
     3301 tcgatgaatc aggtcttcat ttcaaacctg caagacgatg ccttcctgcc gttcagggtt
     3361 gacgatcaga tcacgttgta tgccgagaag cacaatctcg atcaatacaa cttcttcgtg
     3421 caagatgaat ggaaggtgcg tccgaacctg acgttgaact atggtgcgcg ttgggagatc
     3481 aacccgccgg ccaacacgtc gccgcaggcg aatgtgttcg tagccgcgac gccgatcgct
     3541 ggtacgccac tgcccgctac gcccgtcgtc aatcaaccgg gcgcagtgag tttcgtgccg
     3601 gcgaagcgtt ggtatgaagg agacttcaaa tgggccatcg gaccacgctt cggcctggcc
     3661 tacagtcctg atttcaaatc aggattcatg cggacgcttt ttggcgacgg caacaagagc
     3721 gtgattcgtc tgggctacgg aatggcgttc gacacgatct catcgttcca ggtaactgcc
     3781 gcagccggca gaattcccgg actggtccaa agttgcacga cctcttataa cgcgaacgcg
     3841 ggagccttca cttcgatcac cgcgggttgt gtaaactcgc ccgacatcaa caaaactgtc
     3901 gccggcggtt ttccgacgca actgcccgca ccttcagtga aaccgtcgtc actcttgagg
     3961 ccaccgcaac aattgcggac caacgcgcct ccaatcacgg tcttcgcgcc aaggatgcaa
     4021 ctgccgacgg tccatgaatt caactttagt ttgcaacgtg agttgccgtg gggcctggtt
     4081 gcgcaagctg catacatcgg aaggcgcggc acacacctgt tcatggccta tgacatcaac
     4141 cagaccaacc ctgacgcaat cctgccgtcg tttttaatca tgcagcagaa tcgcgcgaag
     4201 ggttgcactc cgaacggcac cggatgtccc gcaggcgtga caggagttac accgcccctg
     4261 ttcaatcaac tccaaacgca gggtggactc actgccacgc aggcggcgag ctttatcaac
     4321 tccacaacga ccgtcagcga gctggacatc aacggcgccg gcagctttgc gcggcgcatc
     4381 gaagacaaca cactcggtct caagctgcgg cccaatcagc agttcggcgt gatcacgtac
     4441 atcgacaaca gcggcgattc aaactatcac gccggtcagt ttacgttgcg gcggcgcttt
     4501 agcacgggtc tgggcctgag catgtcctac acctttggca agtcgatcga caat
//
LOCUS       DASWTX010000493         2684 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_135872, whole genome shotgun sequence.
ACCESSION   DASWTX010000493 DASWTX010000000
VERSION     DASWTX010000493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2684
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135872"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1872)
                     /locus_tag="VGD38_07605"
     CDS             complement(<1..1872)
                     /locus_tag="VGD38_07605"
                     /inference="COORDINATES: protein motif:HMM:NF003619.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoketolase family protein"
                     /protein_id="HEY0727915.1"
                     /translation="MTPEANRLSHEEVRLLNAYWRAANYLSVGQIYLYANPLLHQPLK
                     LEHVKPRLLGHWGTTPGLNFIYVHLNRVIKQRELNVIYVTGPGHGGPGLVANTYLEGT
                     YSEVYPNISQDEAGMQRLFKQFSFPGGIPSHVAPETPGSINEGGELGYSLSHAYGAVF
                     DNPDLLAACVIGDGEAETGPLAASWHSNKFLNPTRDGAVLPILHLNGYKIANPTVLAR
                     ISKDELTSLLIGYGHKPYFVEGDEPEQMHQLMAATLDTALDEIRTIQTKERDGGPAER
                     PQWPMIVLRTPKGWTGPKFVDDKPVEGTFRSHQVPLSQPAKNPEHLRLLEEWMRSYKP
                     EELFDENGTLRAELAELAPKEERRMGANPHANGGLLLKDLRLPDYSDYALEVPAPATV
                     EAEATRIAGRFLRDVMKLNLNERNFRLVGPDETSSNRLDALFEVTDRVWMAETSPADE
                     HESTDGRVMEILSEHLCQGWLEGYLLTGRHGLFSCYEAFIHIVDSMVNQHAKWLKVTR
                     DIPWRRPIASLNYLLTSHVWRQDHNGFSHQDPGFIDHVVNKKADVVRVYLPPDANCLL
                     SVMDHCLRSRNYINVVIAGKQPALQYLDIDAAMTHCAAGIGIWQWASNDDAEPDVVMA
                     "
     gene            complement(1869..>2684)
                     /locus_tag="VGD38_07610"
     CDS             complement(1869..>2684)
                     /locus_tag="VGD38_07610"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEY0727916.1"
                     /translation="FWMGIVGPITSFVIGIVCLGLAWALGWDVANEPGGPAAAMFMWL
                     GYINIALAVFNMIPGFPLDGGRVFRAIVWWITGDATRSTRIASVVGQFVAFGFIMLGI
                     WRFFSGAGFGGLWLAFIGWFLLEAARASGAQVEITERLRGVRVGDVMMRRFPVVDTNT
                     NLEAFVQEHLLPTAQRCFVVEEQGRPAGIITPHEVKAVERRRWPYTTVGDVMRSLEGL
                     QTVGPDRPLAEALEVMGREDVNQIPVVQQGILTGIISRSHVMRVLQTRAELDV"
BASE COUNT          566 a          798 c          755 g          565 t
ORIGIN      
        1 agccatgacg acgtcaggct ccgcgtcgtc gttactggcc cattgccaga tgccgatacc
       61 ggcggcgcaa tgcgtcatcg ccgcgtcgat atccaggtac tgaagcgccg gctgtttgcc
      121 tgcaatcacg acgttgatgt aattccggct gcgcaagcaa tggtccatga ccgacaacaa
      181 acagttcgcg tcaggcggaa gataaacgcg cacgacgtcg gccttcttgt tcacgacgtg
      241 atcgataaaa cccgggtcct gatgactgaa tccgttgtga tcctgccgcc agacgtgcga
      301 cgtgagcagg taattcagcg aagcaatcgg ccggcgccat ggaatatcgc gcgtaacctt
      361 cagccatttt gcgtgctggt tcaccataga atcgacgatg tgaatgaaag cctcgtaaca
      421 cgagaacaga ccgtgacggc cagtcagcaa ataaccctcg agccagccct ggcaaagatg
      481 ctcgctgaga atttccatga cgcggccgtc ggttgactca tgctcgtccg cgggagatgt
      541 ttccgccatc cagactcgat cggtaacttc aaacaaagcg tcgagccggt tcgacgaagt
      601 ctcgtctggt ccaaccagac ggaagttacg ctcattcagg ttgagtttca tcacgtcacg
      661 caggaagcgg cccgcgatgc gcgtggcttc ggcttcgacg gtggccggcg cgggaacttc
      721 gagcgcgtaa tcgctgtagt ccggcagcct cagatccttg agaagcagac caccgttcgc
      781 atgcgggttg gcgcccatgc ggcgttcttc tttcggcgcg agctctgcca gttcagcgcg
      841 caaagttccg ttttcgtcaa acagttcttc cggcttgtag ctccgcatcc attcttccag
      901 cagccgcagg tgctcgggat tctttgccgg ttgcgacaag ggcacctgat gagaacggaa
      961 cgttccctcg accggtttgt cgtcgacaaa ctttggacca gtccaaccct ttggcgtgcg
     1021 caggacgatc atgggccact gcggacgctc ggcaggacca ccgtctcgtt ccttcgtctg
     1081 gatcgtgcgg atctcgtcga gcgcggtatc gagagttgcg gccatcagtt gatgcatctg
     1141 ctcgggctcg tcaccttcga cgaagtaagg cttgtggccg tagccgatca ataaactcgt
     1201 gagctcatcc ttgctgatgc gagcgagcac tgttggattc gcgatcttgt aaccgttcaa
     1261 atgcagaatc ggcagcaccg cgccgtcgcg tgtgggattg agaaacttgt ttgaatgcca
     1321 gctcgcggcg agcggtccgg tttcggcctc gccgtctccg atcacacaag cagccagcaa
     1381 gtcgggattg tcgaataccg cgccatacgc atgagacagc gaatagccaa gctcgccgcc
     1441 ttcgtttatc gaacccggag tttccggagc aacgtgactg ggaataccgc cgggaaatga
     1501 gaactgcttg aacagccgct gcattcccgc ttcgtcctgg gaaatgtttg gatagacctc
     1561 gctgtatgtg ccttcgagat aggtgttcgc gactaagcca ggcccaccgt gaccgggacc
     1621 tgttacgtag atcacgttca gctcgcgttg cttgatgacg cgattgagat gaacgtagat
     1681 gaagttcaag cccggcgttg ttccccaatg gcccagcagt ctcggtttga cgtgctccag
     1741 ctttagcggc tggtgtaaca acgggttggc gtacaagtag atttggccga cggacaaata
     1801 gttggcggcg cgccaatatg cattcagcag ccggacttct tcatgggata atcgatttgc
     1861 ttctggcgtc atacgtcgag ttcggcacgg gtttgcagca cgcgcatcac gtgactgcgc
     1921 gaaatgattc ccgtcagtat tccttgttgg accaccggta tctgatttac atcttcacgc
     1981 cccataactt caagcgcctc cgcgaggggc cggtctgggc caaccgtctg taggccctcg
     2041 agtgaacgca tcacatcgcc gactgttgtg tagggccaac gccttcgttc gactgccttc
     2101 acctcgtgcg gtgtgattat accggcgggt cttccctgct cttcgacgac gaaacaacgt
     2161 tgagccgtgg gcaacaaatg ttcctgtacg aacgcttcga ggttcgtgtt tgtgtctacg
     2221 actggaaagc ggcgcatcat cacgtcgccg accctcacgc cgcgcaatcg ttccgtgatt
     2281 tccacttgcg caccactcgc gcgtgcggcc tccagcagga accagccgat aaacgcgagc
     2341 cacaatccac cgaatcccgc gccgctaaag aagcgccaga tgcccagcat gatgaagccg
     2401 aatgcgacga actggcccac gaccgaagcg atcctcgtcg agcgcgtggc gtctccagtg
     2461 atccaccaca cgatcgctcg aaacacacgg ccgccgtcga gtggaaagcc ggggatcatg
     2521 ttgaaaacgg cgagcgcaat attgatgtag ccgagccaca tgaacatcgc agccgcggga
     2581 ccgcctggct cgtttgcgac gtcccagccg agcgcccacg caagaccgag acacacgata
     2641 ccgatcacaa aactcgtgat tggaccaacg atgcccatcc agaa
//
LOCUS       DASWTX010000494         4333 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_417829, whole genome shotgun sequence.
ACCESSION   DASWTX010000494 DASWTX010000000
VERSION     DASWTX010000494.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4333
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417829"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1497)
                     /locus_tag="VGD38_07615"
     CDS             complement(<1..1497)
                     /locus_tag="VGD38_07615"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0727917.1"
                     /translation="MNSVKGDFANLSEELTDDAVSIEDIDEVLQTLERATSSETEIEE
                     PLIEESSSAVESEEGMSEEVELDLSAGEMDKTSDPIRVYMREMGVVPLLTREQEVSIA
                     KRIERGQKRAEKAIARSPIAVVELFRIGDELAEGKLNIRDVVAFSDQMETEEHEDRSE
                     EYLQWTIEGLNNIRGLYKRGLKEFEKFAEEVKISRGKRSKKLLRYRRKLARTRLEIAQ
                     EIRGLHMKEAARQRLIASIGVVHKEVRALEREIESSNEKLKRKGTKPDKQKEYRKQIA
                     NAKKRLKEIETEHHLTALEIKRSHQMIAVSEAQTAQAKHELTEANLRLVVSIAKKYQN
                     RGLQFLDLIQEGNLGLMKGVDKFDWRRGYKFSTYATWWIRQAITRAIADQARTIRIPV
                     HMIEVINKLKNTSRELVRELGREPTTEEIAKKMDTSVDKVRKARKLMQDPISLETPIG
                     ENGDSQLGDLIEDKSSESPAARVITSNLRESAGDVLQTLSPREERVIRL"
     gene            complement(1558..2088)
                     /locus_tag="VGD38_07620"
     CDS             complement(1558..2088)
                     /locus_tag="VGD38_07620"
                     /inference="COORDINATES: protein motif:HMM:NF014173.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEY0727918.1"
                     /translation="MSTNSRFAVAVHVLSLMAWSGEEPLKSEQVAESVNTNAVVIRRM
                     LLDLAQAGLVVSQTGSMGGSRLATDPAKTTLLDVYQALECGGVFSLHRQPPSRDCPVG
                     VNIETVLGEVLQEVDSAVEQVLKSITIDDVVQRLKPCGTLNNVKNPRVGKTPAKLNGK
                     LNGRVNGKVAKVLRTA"
     gene            complement(2382..4043)
                     /locus_tag="VGD38_07625"
     CDS             complement(2382..4043)
                     /locus_tag="VGD38_07625"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0727919.1"
                     /translation="MSSSFDHSGNHRLVKDAAGLPLLNHARLMVVDDEESLRITTAAI
                     LEKEGYTVDVASSGNEAVALLANAEYDLVLTDLHMEGGEGLMVLHEIRRNAPFTISVV
                     LTGFASVESAIAALQEGAYDYLVKPCDIETMKHTIRRGVEHRRLMLAEQKARADLEQL
                     NLDLERRIAERTAELTRLNVELADANRAKDVFLATLSHELRTPLTPVVGWIKLLRSGN
                     LDSKSIAQALDAIERNAWLQARLIDDLLDTSRIATGKLQFEPRPTDLNTTVKAALETV
                     RAMAASRNIELSVMLSPATLVVMGEPVRLQQIAWNLISNAIKFTDPGGKVTIRTETHG
                     REARLVVSDSGIGISPDFLPHVFDRFRQADGSTSRRHGGLGLGLAIADALAKMHGGRL
                     EAHSDGVGKGSTFAFHVGLVAEESVTPEKAESKQRSLKDLNVLVVEDSEDTLTLLSTM
                     FSREGANVTKAASASAALDAASSNPPDIVISDIGMPDVDGYQFLQQLKQIPGMDGVPA
                     IAISGYASDEDRRKALNVGYLTLMPKPINVDTLFDFIHDLKLPAA"
     gene            complement(4050..>4333)
                     /locus_tag="VGD38_07630"
     CDS             complement(4050..>4333)
                     /locus_tag="VGD38_07630"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0727920.1"
                     /translation="STARYEQALQPSIIVQLSDSGVGIAEADLTRIFDPFFSTGKKGT
                     GLGLWVTQDIVRQHGGRIEVTSDIGRGTVFSIVLQVDSPVLDEKKNERR"
BASE COUNT          811 a         1294 c         1182 g         1046 t
ORIGIN      
        1 caaacgaatg acgcgctctt cacgcgggct caaggtttgc agaacgtcgc cggcactctc
       61 gcgcaggttt gaagtaatga cgcgggccgc cgggctttcg ctcgacttgt cttcgatcaa
      121 gtcgccgagc tgtgaatcgc cgttctcgcc aattggcgtt tcgagcgaga tcggatcctg
      181 catcagcttg cgtgccttgc gcaccttgtc gacggacgtg tccatcttct tggcgatctc
      241 ttcggtcgtt ggttcgcgcc cgagttcgcg caccagttca cgcgaagtgt tcttcagttt
      301 attgatcact tcgatcatgt ggaccgggat acgaatcgtt cgtgcctgat cggcgatagc
      361 gcgggtgatt gcctggcgaa tccaccacgt tgcgtacgtg gagaacttgt aaccacgccg
      421 ccagtcaaac ttgtcgacgc ccttcatcaa accgagattg ccttcctgaa tcagatccag
      481 gaactgcaaa ccgcggtttt gatacttctt ggcgatcgag acgaccagcc gcaggtttgc
      541 ttcggtcaac tcgtgcttcg cctgcgccgt ctgcgcttcg ctgacagcga tcatctggtg
      601 cgaacgtttg atctccaacg cagtcaggtg atgctcggtc tcgatttctt tgagacgctt
      661 cttcgcgttc gcgatctgtt tgcgatattc cttctgcttg tcgggctttg ttcccttgcg
      721 cttcagtttc tcgtttgaag attcgatctc gcgctcgagc gcgcgcactt ccttgtgcac
      781 gacgccgatg gaagcaatga gccgctgccg ggccgcttcc ttcatgtgca gaccgcggat
      841 ctcctgggca atttccaaac gtgtacgagc gagtttgcgg cggtagcgca gcagtttctt
      901 cgagcgtttg ccgcgcgaga ttttgacttc ttccgcaaac ttttcgaatt ccttcaagcc
      961 gcgcttgtac agcccgcgga tgttattcaa accctcgatc gtccactgca aatactcttc
     1021 gctgcggtct tcgtgctcct cggtttccat ctggtccgag aacgcgacga cgtcgcgaat
     1081 gttgagtttt ccttcggcga gttcatcgcc gattctgaag agctcgacca cggcgattgg
     1141 cgaacgcgcg attgctttct ctgctcgttt ctgacctcgt tcgattcgct tggcgatgga
     1201 cacttcctgt tcccgagtca acaagggcac tacgcccatt tcgcgcatgt agacgcgaat
     1261 cggatcggaa gtcttgtcca tttcgccggc cgagagatcc aactcgacct cttcactcat
     1321 tccttcttct gattcgacgg cagacgaaga ctcctcgatc aagggttcct cgatctccgt
     1381 ttcactgctg gtggctcttt ccagcgtttg tagaacctcg tcgatatctt ctatcgacac
     1441 ggcatcgtcg gtgagctctt cgctcaggtt ggcgaagtcg cctttaaccg agttcatgag
     1501 ctcgataccg ttttgatctt tttcaagcct ggacaaaatt agctattcct ttctcgctta
     1561 agcagttctg agaactttag cgacttttcc gttcactcgc ccgttcaact ttccgttcaa
     1621 ctttgcgggc gtctttccca ccctgggatt tttcacatta ttgagagttc cgcatggctt
     1681 taatcgttgc acgacgtcgt cgatggtgat gcttttcaac acctgctcga ctgctgagtc
     1741 aacctcctgc aacacctctc ccagcactgt ttcgatattc acgccgacag ggcagtcgcg
     1801 gctgggcggc tgccggtgca atgagaaaac accgccacac tcgagggcct ggtaaacgtc
     1861 caaaagcgtg gtcttcgccg ggtcagtcgc gaggcgggag ccgcccatcg acccagtttg
     1921 ggacaccacc agcccagctt gcgcaaggtc cagcagcatc cggcgaatta ccaccgcatt
     1981 tgtgtttacg ctttccgcaa cctgttcgga tttaaggggt tcttcgcccg accaggccat
     2041 caaactcaag acatgcaccg ctacggcaaa gcggctgtta gtcgacatat caaaacacgc
     2101 ttcccagctc ggggggtcaa ttttgtaacc attatagtta caatttcgat tttgtcaact
     2161 atttgattgg gttagagttt ggggtaatcc caccaacgga gttggtggtt agttcagacc
     2221 tgtgcgacgg aggtgaacta tccaccgact gcgtcggtgg gattgctcgt ttcagatgtt
     2281 gggaggtagg tcgggtatga actatccacc accgactagg tcggtgggat tcaaccgcag
     2341 taagaccttc aagccttcag gcgttagcag cacctttagg cctacgcggc ggggagtttc
     2401 aggtcgtgga tgaagtcgaa gagggtgtcc acgttgatgg gcttcggcat cagggtgagg
     2461 tagccgacgt tcagcgcttt gcgccggtct tcgtcgctcg cgtagccgga aatcgctatg
     2521 gccggaacgc cgtccatgcc cgggatctgt ttcagttgct ggagaaactg gtagccatcc
     2581 acgtccggca tgccgatgtc ggaaatcacg atgtccggag ggttcgaact agccgcatct
     2641 aaagccgcac tcgccgaagc cgccttagtc acattcgcgc cctcgcgcga gaacatcgtg
     2701 ctcagcaacg tcagcgtgtc ttcagagtcc tcgacaacca gaacgttcaa atccttcaat
     2761 gaacgctgtt tcgactccgc cttctccgga gtcacgctct cctccgctac caaaccgacg
     2821 tgaaatgcga acgtcgagcc tttccccaca ccatccgaat gcgcctctaa ccggccgccg
     2881 tgcatcttcg ctagcgcatc cgcgatcgcg aggccgagcc cgagcccgcc gtgacgccgc
     2941 gaggtcgatc cgtcagcctg ccggaaacga tcgaaaacgt gcggcaggaa atccggcgag
     3001 atgccgatgc ccgagtcgga aacgacgagc cgggcttcgc ggccatgcgt ctccgttctg
     3061 atagtcactt ttccgcccgg atccgtgaac ttgatggcgt tcgaaatcag gttccacgcg
     3121 atctgttgca gacgcaccgg ttcgcccatc acgaccagcg tagcgggcga caacatcacc
     3181 gagagctcga tgttgcgtga ggcagccatg gcgcgaaccg tctcgagcgc ggccttcacg
     3241 gtcgtgttca ggtccgttgg ccgcggttca aactgcaatt tgccggtggc aatgcgcgac
     3301 gtgtcgagca gatcgtcgat caggcgcgcc tggagccacg cgttgcgctc gatggcgtcg
     3361 agcgcctggg caatgctctt gctgtcgagg ttcccgctgc gcagcagttt gatccaaccg
     3421 acgacgggcg tcagcggcgt gcgcagttcg tgcgaaagcg tcgcaaggaa aacatctttg
     3481 gcgcggttcg catcggcgag ctcgacgttc agccgggtca gctcggccgt gcgttcggca
     3541 attcttcttt cgagatcgag attgagctgc tccaggtccg ctcgcgcttt ctgttccgcc
     3601 agcatcagcc gccggtgctc gacgccgcga cgaatcgtgt gtttcatcgt ctcgatgtcg
     3661 cagggtttga cgagatagtc gtacgcgcct tcctgcaatg cggcgatggc cgattcgacg
     3721 gaggcaaaac cggttaagac gacggaaatc gtaaacggag cgttgcggcg gatctcgtgc
     3781 agcaccatga ggccctcgcc gccctccatg tgcaggtcgg tgagcaccag atcgtattca
     3841 gcattcgcaa gcagggcgac cgcttcgtta ccactcgacg ccacgtcgac ggtgtaaccc
     3901 tctttttcaa ggatcgccgc cgtggtgatc cgtagactct cttcgtcgtc gactaccatc
     3961 aaacgcgcgt ggttcagcag cggtagtccc gccgcgtcct tcaccaaacg atgatttcct
     4021 gaatggtcga atgaactact catttacctt tatcgccgct cgttcttctt ttcgtccaga
     4081 accggggagt caacctgcaa tacgatgctg aaaaccgtgc cccggccaat gtcgctggta
     4141 acttcgatgc gcccgccgtg ttggcgaacg atgtcctgcg tcacccacaa gccgagtccc
     4201 gtcccttttt tgccggtcga gaagaacgga tcgaatatgc gcgtcagatc agcttctgca
     4261 attccgacgc cactgtcgct gagctgaacg atgatcgacg gctgcaacgc ctgttcgtaa
     4321 cgcgccgtcg aga
//
LOCUS       DASWTX010000495         1704 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_93049, whole genome shotgun sequence.
ACCESSION   DASWTX010000495 DASWTX010000000
VERSION     DASWTX010000495.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93049"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..950)
                     /locus_tag="VGD38_07635"
     CDS             complement(<1..950)
                     /locus_tag="VGD38_07635"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HEY0727921.1"
                     /translation="MGRLFGYLRRYSNQYLLGGLFLLATATLVMWIPWWIREAVRVIE
                     HGGPASGAVYYAVLIIVAAIVQGVVRTYSRALIFNAGRNIEYDLRNDLFAHLQKLPPS
                     YYHRQRTGDLMSRVINDISAVRVMLGPGVLNFVNAPLYYVYAVALMLSMDVRMTLAAL
                     APFPLLMYAARKFRGKILKSSLEVQQQMSVLSSHVQENLSGMHVVKAYAQEDFQTQQF
                     IALNKDYQVKSMEMAKMRGIVNPIMQGINGLTVLIVIWYGGVRVLRGDLLVADIVAFI
                     AYLNVLAWPTAAFGWMLSLVERGRAAMRRLDEILESQPEIG"
     gene            1053..>1704
                     /locus_tag="VGD38_07640"
     CDS             1053..>1704
                     /locus_tag="VGD38_07640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEY0727922.1"
                     /translation="MQTAENRRPDIRNIAIIAHVDHGKTTLVDALLRQSGIFRANEHV
                     AERIMDSMDLERERGITIMAKNTTVRYGDVKINIVDTPGHADFGGEVERVLKMVDGVM
                     LLVDAAEGCLPQTRFVLRKALEARLPAIAVVNKIDRGDARPAEVVDEIYELFLDLDAT
                     DEQIEFPILYAVSREGPAKRKLEDHSENLQPLFEQIVASIPPPGELRTDSLQLLVAN"
BASE COUNT          372 a          521 c          504 g          307 t
ORIGIN      
        1 ccgatctccg gctggctctc gagaatttcg tcgagccggc gcatagcggc ccgcccgcgc
       61 tcgaccaacg agagcatcca gccgaacgcc gccgtgggcc aggcaagaac gttcagatag
      121 gcgatgaagg caacgatatc ggcaaccagc aggtcgccgc gcagcacgcg cacgccgcca
      181 taccagatca cgatcagcac cgtcaggccg ttgatgcctt gcatgatcgg attgacgatc
      241 ccgcgcatct tcgccatttc catgcttttg acttgatagt ctttgttgag cgcgatgaac
      301 tgctgggttt gaaaatcttc ctgggcgtag gccttgacca cgtgcatgcc gctcagattc
      361 tcctgcacgt ggctgctcag caccgacatc tgctgctgca cttcgagcga gcttttgagg
      421 attttgccgc gaaactttcg cgcggcatac atgagcagcg gaaacggcgc gagcgccgcg
      481 agcgtcatgc gcacatccat cgacagcatc aaagccacgg cgtagacgta atagagcggc
      541 gcgttgacga agttgagcac gccgggaccg agcatcacgc gcacggcaga aatatcgttg
      601 atcacccgcg acatgagatc gcccgttctc tgccggtgat agtacgacgg tggaagcttt
      661 tgcagatggg cgaacaggtc attgcggaga tcgtactcga tattgcggcc ggcgttgaaa
      721 atcagcgcac gcgagtacgt gcgcacgact ccttgcacga tcgcagcgac gatgatcagc
      781 accgcgtagt agaccgctcc ggaggccggt ccaccgtgct cgatcacacg caccgcctcg
      841 cgaatccacc aggggatcca catgacgaga gttgcggtgg cgagcaggaa cagaccgccg
      901 agcaggtact ggttcgagta gcggcggagg taaccgaaca atcttcccat ggagctttgt
      961 taagatactc cacggtgctt gcgcccgcaa atcgaagctc ggcggcgcag cccagcttga
     1021 caacgccggc acgctcccta ataaacgaag agatgcaaac tgctgaaaac cggcgtcccg
     1081 acatccgcaa catcgccatc atcgcgcacg tcgatcatgg caaaaccact ctcgtcgatg
     1141 cgctactgcg gcagagcggc atcttccggg ccaacgagca cgtcgccgag cggatcatgg
     1201 attccatgga cctcgagcgc gagcgcggca tcacgatcat ggccaagaac accacggttc
     1261 gctacggcga tgtgaagatc aacatcgtcg acactcccgg tcacgccgac ttcggcggcg
     1321 aagtcgagcg cgtgttgaag atggtcgacg gcgtgatgct gctcgtcgat gcggccgagg
     1381 gttgtttgcc gcaaacaagg ttcgtgttgc gtaaggcgct cgaagcacgc ctgccggcga
     1441 tcgcggtcgt caacaagatc gatcgcggcg acgcgcggcc ggccgaagtc gtcgacgaga
     1501 tctacgagtt gtttctcgat ctcgacgcca ctgacgagca gatcgagttt ccgattctct
     1561 acgccgtctc tcgtgaagga ccggcgaagc gaaagttgga agaccactcc gagaatctgc
     1621 agccgctgtt tgagcagata gtcgcatcga tcccgccgcc aggagagctg cgaactgact
     1681 cgctgcaact gctcgtcgca aacc
//
LOCUS       DASWTX010000496         1794 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_179317, whole genome shotgun sequence.
ACCESSION   DASWTX010000496 DASWTX010000000
VERSION     DASWTX010000496.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1794)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1794
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179317"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1794)
                     /locus_tag="VGD38_07645"
     CDS             complement(<1..>1794)
                     /locus_tag="VGD38_07645"
                     /inference="COORDINATES: protein motif:HMM:NF019368.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004559 - alpha-mannosidase activity
                     [Evidence IEA];
                     GO_process: GO:0006013 - mannose metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 38 C-terminal
                     domain-containing protein"
                     /protein_id="HEY0727923.1"
                     /translation="SHGPTGPSREEDWPRRVHLNGKLSGVFTDYHYYGTGDTGGAPRE
                     DSVRMMEAIVSRNDGPLKVVSATAEEMFLNIRSDQIKRLPRYEGDLLLTDHSAGSLTS
                     QSYQKFWNRQNELLADAAEKASVGAAWLGARTYPQQRLNDAWTLVMGGQFHDILPGTS
                     TPKAVEFSWNDDVIALNQFTSVLTSATEGIAAELDTQSNGVPIVVYNPLNIEREDVVE
                     AAVPVSGGPVRVVGPDGREVPSQVVGEKVLFLARVGSVGYAVYDVGLGREASKATNLK
                     VADLSLENDRYRVELNRDGDVASVFDKKLNRELLDAPLRLAIKHDTPAQWPAWNMDWT
                     DQQKPPRAYVGGPARIRVVENGPVRVAIEVVRETEGSKFQQTVRLSAGDAGNRVEFSN
                     VIEWKTGNANLKATFPLTASNPKATYNEGIGTLERGNNDERKFEVPSHQWFDLTDRSG
                     SFGVTILSDCKYGSDKPDDNTLRLTLLRTPGIGPRAGYADQATQDWGRHEFVYGLAAH
                     GGDWRSAQTDWHAQRLNQPLIAFQSSKHAGKLGKRFSIMNLNTNRVRVLALKKAEESD
                     EVIVRIVELDGRAAPDVRISFPAPVIAAREV"
BASE COUNT          372 a          607 c          428 g          387 t
ORIGIN      
        1 ttaacttcac gcgccgcaat caccggcgcc ggaaacgaga tgcgcacgtc cggcgcagcg
       61 cgcccgtcga gttcaacgat gcgcacgatc acctcatcac tctcctccgc tttcttcagc
      121 gcaagcaccc gcacgcgatt ggtatttaag ttcatgatcg aaaatctctt ccctagctta
      181 ccggcgtgtt ttgaactctg aaacgcgatg agcggttgat tcaaacgctg cgcgtgccag
      241 tccgtttgag cgctacgcca atcaccacca tgcgccgcta gaccgtaaac aaactcatgc
      301 cggccccagt cctgcgtcgc ctgatccgcg taacctgccc gtggcccaat gcccggagtg
      361 cgcagcagcg ttaaccgaag cgtgttgtcg tcaggcttgt ctgagccgta cttgcaatcc
      421 gaaagaatcg tcacgccgaa agatccgctt ctatccgtga ggtcgaacca ctgatgcgaa
      481 ggcacttcaa actttcgctc gtcgttgttg ccgcgttcga gcgtgccgat tccctcgttg
      541 tacgtcgctt ttggattcga cgccgtcagc ggaaacgtgg ctttgagatt tgcgttaccc
      601 gtcttccatt caatgacgtt gctgaactcg acgcgattac ccgcgtcgcc cgcggacaag
      661 cgcaccgtct gctgaaactt cgatccctcc gtttcgcgca ccacttcgat cgccacacgc
      721 accggaccat tctcgacaac acgaatccgc gctggtccac caacgtatgc acgcggcggt
      781 ttttgctggt ccgtccaatc catgttccac gccggccact gcgccggcgt gtcgtgcttg
      841 atcgcgagcc gcagcggcgc atcgagcaat tcacggttca gtttcttatc gaaaacactc
      901 gcaacatctc catcgcgatt cagctccact cgataacggt cgttctccaa cgacaaatcc
      961 gcaactttta agttcgtcgc tttggacgct tcacgcccta atcccacgtc gtaaaccgcg
     1021 taacccacgg aaccaaccct cgccagaaac aacaccttct caccaaccac ttgcgacggc
     1081 acttcacgcc catccggccc aaccactctc accggcccgc cagagaccgg caccgccgct
     1141 tcaaccacat cttcacgctc aatattgagc gggttgtaaa caacgatcgg cacaccgttg
     1201 ctctgcgtgt ccagttccgc tgcgattcct tcggtcgcgc tcgtcaacac gctcgtaaac
     1261 tgattcaacg cgatcacgtc gtcattccac gaaaactcaa ccgccttcgg cgtcgacgtt
     1321 cccggcaaaa tgtcgtgaaa ctgtccaccc atcacgagcg tccacgcatc attcaaccgc
     1381 tgctgcggat acgttcgcgc acccaaccac gcagcgccaa ccgacgcctt ctccgccgcg
     1441 tcggcaagca gttcgttctg acgattccaa aacttctgat aactctgcga cgtgagcgaa
     1501 ccagcggaat gatccgtcaa caacagatcg ccttcgtaac gcggcaggcg ctttatttgg
     1561 tcagaacgga tgttgagaaa catctcttcg gcagtcgccg acacgacttt caatggtcca
     1621 tcgttgcggg aaacgatcgc ttccatcatg cgcactgaat cttcgcgcgg ggcgccgccc
     1681 gtgtcgccgg tgccgtaata gtgatagtca gtgaagacac cgctgagctt tccgttgaga
     1741 tgaacgcgcc gtggccagtc ttcttcacgg ctgggcccgg ttgggccatg actc
//
LOCUS       DASWTX010000497         1818 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_266392, whole genome shotgun sequence.
ACCESSION   DASWTX010000497 DASWTX010000000
VERSION     DASWTX010000497.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1818)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1818)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266392"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..638
                     /locus_tag="VGD38_07650"
     CDS             <1..638
                     /locus_tag="VGD38_07650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727924.1"
                     /translation="NGGGFNSSMSTNMIQLGAPLNDGSSINLQLLFGVQQEGTANFCA
                     VIETLPFTTSSVMCFNDDTTPPILTSSLALTALSPPNSDLVNVGLAASANEPATFSVS
                     VFGDEDDETPTAPGVINSPDAKDIAVGTLRLRSERTDAGDGRVYLVVVTATDTAGNAS
                     KACHTVVVARKKKGDVDAQAAAAKTFCEANNGAAPPGYFVIGDGPIIGPKQ"
     gene            complement(657..1691)
                     /gene="lpxD"
                     /locus_tag="VGD38_07655"
     CDS             complement(657..1691)
                     /gene="lpxD"
                     /locus_tag="VGD38_07655"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: protein motif:HMM:NF002060.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HEY0727925.1"
                     /translation="MKKTVTELAELVGGRVVGDGEKEISQINELGSAGESEIAYVEQK
                     FLSAASESKAGALIVPLGRGVEFSERTVIEVQNPKLAFALIGAVLHPAVRREPEIHST
                     AVVAESADVALTAYIGPHVQIGAGARVGAYTRIEAGVVVGANVTIGDNCVLHPNVVLY
                     DGVTIGNHVILHAAVCIGADGFGYVRHDHGYHKFPQIGTVVIEDEVEIGAHTCIDRAA
                     LGRTRIGRGTKLDNMVHVGHNCDIGERVVIAAQTGISGSVVIEDDAVIGGQVGFGDHT
                     RVQKGAVIGSKAGILPGKIVRPGVWWGIPVQPLDQYKRMNAYLNRLPELYEQIKQLRQ
                     QLAELKQSTD"
BASE COUNT          375 a          589 c          487 g          367 t
ORIGIN      
        1 cgaacggcgg cggattcaac agcagcatgt cgacaaacat gatccaactg ggtgcgccgc
       61 tgaacgacgg cagcagcatc aacctgcaac tcctgtttgg cgttcagcag gaaggcaccg
      121 cgaacttctg cgcggtgatc gaaacgctgc cgttcacaac gtcgtccgtc atgtgcttca
      181 acgacgacac gacgcccccg atcctgacgt cgtctttggc gctcaccgcg ctgtcgccgc
      241 cgaacagcga tctcgtgaac gttggtcttg cagccagcgc taacgagccc gcgacgttca
      301 gcgtgtcagt gtttggcgat gaggacgacg aaacgccaac ggcgccgggc gtgattaact
      361 cgcctgacgc gaaagacatc gcggtcggca cactcagatt gcgatctgaa cgaaccgatg
      421 ccggcgacgg gcgtgtttac ctcgtcgtgg tcacggcaac tgacacggcg ggcaatgcaa
      481 gtaaggcctg tcacacggtt gtagtggcgc gcaagaagaa aggggacgtt gacgcgcagg
      541 ctgctgcggc gaagacgttc tgtgaagcca acaacggagc cgcgccgccg ggatatttcg
      601 tgatcggcga tggtccaatc atcgggccta agcagtaacc acggatttac gccgatttaa
      661 tctgtggact gttttagttc cgctaactgc tgccggagtt gtttgatctg ttcatacagc
      721 tccggcagtc tgtttaggta ggcattcatc cgcttgtact ggtccaacgg ctgcaccgga
      781 attccccacc acacaccagg ccgcacgatc ttgcccggca gtatcccggc tttcgatccg
      841 atcaccgcgc ccttctgcac gcgcgtgtga tctccaaaac caacctgccc gccaatcacc
      901 gcgtcgtcct cgatcacgac gctgccgctg ataccggttt gcgcggcgat cacgacgcgt
      961 tcgccgatgt cgcagttgtg accgacgtgg accatgttat cgagcttggt gccgcgtccg
     1021 atgcgcgtgc gtccgagagc ggcgcgatcg atgcaggtgt gcgcgccgat ctccacttca
     1081 tcttcgatca cgaccgtgcc gatctgcgga aacttgtggt agccgtgatc gtgacgcacg
     1141 taaccaaaac catccgcgcc gatacaaacc gcggcgtgca ggatcacgtg attgccgatc
     1201 gtgacgccgt cgtacaacac cacgttcggg tgcagcacgc agttgtcgcc gatcgtcaca
     1261 ttcgcgccca cgacgacgcc cgcttcgatg cgcgtgtaag cgccgacacg cgcgcccgct
     1321 ccgatctgta cgtgtggtcc aatataagca gtgagcgcaa catccgcgct ctccgcaaca
     1381 accgcagttg aatgaatctc cggctcacgc cgcacagccg gatgcagcac cgcgccaatc
     1441 aacgcaaacg cgagcttcgg attctgaacc tcaatcactg tcctttctga aaattccaca
     1501 ccgcgcccga gcgggacaat caaagccccg gctttactct cgctagcagc actcaggaac
     1561 ttttgctcga cgtacgctat ctcactttct cccgcgctac ccagttcatt gatctgagag
     1621 atctctttct caccgtcgcc aacaacgcgg ccgcctacaa gttcagcgag ttccgttaca
     1681 gttttcttca cgctcttatg aaacctcgct tcgaaccacg gataaacctc accaggtgcg
     1741 caacgttctc gtcctcgatc tgctcgagtt cctgaagcac gtccgccagc ggcgccgccg
     1801 acttaaacaa cgttcgat
//
LOCUS       DASWTX010000498         2537 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_179378, whole genome shotgun sequence.
ACCESSION   DASWTX010000498 DASWTX010000000
VERSION     DASWTX010000498.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2537
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179378"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..186)
                     /locus_tag="VGD38_07660"
     CDS             complement(<1..186)
                     /locus_tag="VGD38_07660"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEY0727926.1"
                     /translation="MSQEIIKTEVLIVGAGPTGLALAGQLIRYGVDFVIVDQKEGTTP
                     FSKAIGVQARTLEIYQQI"
     gene            complement(183..551)
                     /locus_tag="VGD38_07665"
     CDS             complement(183..551)
                     /locus_tag="VGD38_07665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727927.1"
                     /translation="MNTKVKTILVLSLLVILQSVVAAQDRANRPETEKKDTVEDLQLQ
                     LIELQSKEDTLRIRAQQLDEDLKPENIERSLAGIGSTRPEDLREMRRRQLTIERESVR
                     AQLKILEKMRARLEAAIGEI"
     gene            824..1126
                     /locus_tag="VGD38_07670"
     CDS             824..1126
                     /locus_tag="VGD38_07670"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEY0727928.1"
                     /translation="MTTRITRIEGERMNQMILKLEGALTIADARLLEEICTDLQDELR
                     CAITIDLSGVNFLGSQSAEILCRLKSMPDLEIEGAHLFVQQIIDSVENRRNGGPHE"
     gene            1119..2465
                     /locus_tag="VGD38_07675"
     CDS             1119..2465
                     /locus_tag="VGD38_07675"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEY0727929.1"
                     /translation="MNKLILLPLVLFIAAHAALAQDNGDVLTLNQAIEIALKSNREAK
                     NAKLEIDKAEDKLGAFRTRRLPSFKVSSLVSQPLSTFDTTFEKGVFGTYPGIGSVPNE
                     DTVITSSTNTTGLIVGQVTQPLTQLRRIGLQIKQQELAVQISETQLRATEQALVNDVK
                     RAYYAILQTEGAARAAEESVKLYRELDRVTGEYVVQQVALKTDLMDVQTRVAKAEYEV
                     LTLNNSLSAQKEQLNNLLGRDVRTEFSVTDAVETVQIAMRETDLVEARKRALDQRPEI
                     REARLRLQQANLDKRAKKSEFIPDVSLTYNYVAAFNYSNFVPRSVSGVGIQVEWEVFD
                     WGRKKNEVKEKNRTIAQADNTLLETESRVLMEVNAKYRTLQESCQLIRIAKLAQTTAR
                     ANVQMAAHKYRLEAVLLKDVLQAQTSLANADYDYQKALLSFWTAKADFEKAIGEDK"
BASE COUNT          614 a          708 c          690 g          525 t
ORIGIN      
        1 gatctgttgg taaatctcca gagtccgcgc ctgcacgccg atggctttcg agaaaggcgt
       61 tgtgccctcc ttctgatcga cgatcacgaa gtcgacgcca tagcgaatga gttggcccgc
      121 aagcgccagt cctgtcggac ccgccccaac aatcaatact tctgttttga taatttcctg
      181 actcatattt ctcctatcgc ggcttcgagc cgcgcgcgca tcttctccag gatcttcaac
      241 tgcgctctga cactctcgcg ctcgatcgtg agctgccggc ggcgcatttc gcgcaagtct
      301 tcaggtcgtg tcgaaccgat tcctgcaaga gagcgctcga tgttttccgg tttcaaatcc
      361 tcgtccaatt gttgcgcgcg aatacgcagc gtgtcttcct tgctttgcaa ctcgatgagt
      421 tgcagttgta agtcttctac tgtgtccttc ttttcagttt caggtcgatt ggcacggtcc
      481 tgagcagcca cgactgactg cagtattact aataaggaca gcaccaaaat tgttttcact
      541 ttcgtgttca tcgtaactcc tcgccgatga gtcttagcaa aagacgggcc gaatccgttt
      601 cggccaaatc tcgcgagtcg gcgtggagtt caacgcgata tttggcgttc gacgcgatat
      661 ttggcgtcga aaactgagtt ttcgcgccgc cgcttcaaac cactcaaaac aacccgccat
      721 aaccgtttcg tctcgctgtg acaacaactt agctcgctgc acacccgcgc acacaggcgt
      781 tggccctgtc gttgcactag ccactaatga aaggacgttg acgatgacca caaggattac
      841 ccggattgaa ggtgaacgaa tgaatcagat gattctcaaa ctcgaaggcg cgctcacgat
      901 cgccgacgcg cgactgctcg aagagatttg caccgacctg caggacgagc ttcgctgcgc
      961 gatcaccatc gacctgtcgg gcgtgaattt tctcggcagc cagagcgcgg agattctctg
     1021 ccggctgaag tcgatgcctg acctcgagat tgaaggagcg catttgttcg tgcagcagat
     1081 tattgactcg gttgagaaca gaagaaacgg tgggccccat gaataaacta atacttctac
     1141 cgctcgtact ttttattgcc gcacacgcag cgttggccca ggacaacggc gacgtcctga
     1201 cgctgaacca ggccatcgag atcgcgctga aaagcaatcg cgaagcaaag aacgcaaaac
     1261 tcgaaataga taaagccgaa gacaaactcg gcgcgtttcg cacgcgtcgc ttgccgtcgt
     1321 tcaaagtgag ctcgctggtt tctcagccgc tcagcacgtt cgacacaacg ttcgaaaaag
     1381 gcgtgtttgg aacttatccg ggaatcggtt cggtgccgaa cgaagacact gtcatcacgt
     1441 cgtcaacaaa cacgaccgga ctcatcgtcg gccaggtcac gcaaccgtta acacaactgc
     1501 gtcgtatcgg ccttcaaatc aaacaacagg agctcgcggt tcagatctcg gagacgcagt
     1561 tacgcgctac cgagcaagcg ctcgtcaacg acgtgaagcg cgcgtattac gcgatcctgc
     1621 aaaccgaagg cgcggcgcga gccgcggaag agtcagtgaa gctctatcga gagctcgatc
     1681 gcgtcacggg tgagtacgtg gtccaacaag tggcgctcaa gaccgacctg atggacgtgc
     1741 aaacgcgagt cgcgaaagca gagtacgaag tgctgacgct gaacaactcg ctgagcgcgc
     1801 agaaggaaca actgaacaac ctgctcggac gcgacgtgcg caccgagttc agtgttaccg
     1861 acgcggtcga aaccgttcag atcgcgatgc gcgagacgga tctggttgag gcgcgcaaac
     1921 gcgcattgga ccaacggccg gagattcgcg aagcacggtt gcggctgcaa caggcgaatc
     1981 tcgacaagcg cgcgaagaag tcggaattca tccccgacgt gagcctgacc tacaactatg
     2041 tcgccgcttt caactattcg aactttgtcc cgcgcagcgt gagcggcgtc ggtattcagg
     2101 tcgaatggga agtgttcgac tggggccgca agaagaacga agtcaaagag aagaaccgca
     2161 cgattgcgca ggccgacaac acattgctcg agactgaaag ccgcgtgttg atggaagtga
     2221 acgcgaagta ccgcacgctg caggaaagct gccagctcat tcgcatcgcg aaactcgcgc
     2281 agaccaccgc gcgcgcaaac gtgcagatgg cggcccataa ataccggctc gaggcggtgc
     2341 tgctgaaaga cgtgttgcag gcgcagacgt cgctcgcgaa tgccgattac gactaccaaa
     2401 aagctttgct ctccttctgg acggcgaaag cagattttga aaaggcgatt ggagaagaca
     2461 aatgaaaacg aaacgaatgt tccccgttgc tggccttgtt ctgttcagtt tgattcttgg
     2521 tggctgcgcg aaagaaa
//
LOCUS       DASWTX010000499         1978 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_29955, whole genome shotgun sequence.
ACCESSION   DASWTX010000499 DASWTX010000000
VERSION     DASWTX010000499.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1978)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1978)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1978
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29955"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..420)
                     /locus_tag="VGD38_07680"
     CDS             complement(<1..420)
                     /locus_tag="VGD38_07680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727930.1"
                     /translation="MTLLLTSRITVPIPRFSSQISVSDTFVFLILLLYGAPAAIIVGA
                     IEAFLSSLRFTRKTKIIAFNWASAAVSIFITSSVIEALFGHVVALRAHPFTTRFATAI
                     CTMALTHYVANSGIVAICASLKADQPIWQTWKKHYLWT"
     gene            complement(632..1549)
                     /locus_tag="VGD38_07685"
     CDS             complement(632..1549)
                     /locus_tag="VGD38_07685"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY0727931.1"
                     /translation="MLQLRTAPRANELSHQLAPKVGTISVDCLVNDDEREVLEFLAQR
                     PIHTVTMMSMIHDNGIVSPLNRGTFYGCRDRNGKLEGVALVGHATLMETVSDRALAAL
                     AQVAQQCANTHMIMGEKERVADFWGHYAAAGRQQRLACREWLYELSWPIEAREPVAGL
                     RRATSAELELVMPVQAELAFVESGVNPLQVDPEGFRKRCLRRIEQGRTWVVVENGKLI
                     FKADVISRTREVNYLEGIWICEERRADGAGLRFMSDLMRRLLEETKSICLLVNETNKL
                     AQSFYRKCGFHFRATYETIFLPRMEQAQN"
     gene            complement(1602..>1978)
                     /locus_tag="VGD38_07690"
     CDS             complement(1602..>1978)
                     /locus_tag="VGD38_07690"
                     /inference="COORDINATES: protein motif:HMM:NF012360.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727932.1"
                     /translation="LVGDGLGVLVGDGVLVGDALGVLVGDITMISDGVLLGDTLHVSN
                     GTKFGQGVVFIPTGVLVGDGVLIADGVLIGDGVLIGDGVLIGDGVLIGDAILQAFNSM
                     LNGDQTTEMAIVPDDDTDYLGY"
BASE COUNT          432 a          560 c          578 g          408 t
ORIGIN      
        1 agtccagaga tagtgtttct tccaggtctg ccagatcggc tgatcggctt tcagtgatgc
       61 gcaaatcgcg acgattcctg aattagcaac gtagtgtgtt aaggccatcg tgcagatggc
      121 ggtcgcgaaa cgtgtggtaa acggatgcgc gcgcagtgca accacgtggc caaacagcgc
      181 ttcgatcaca ctgctggtga tgaagatcga cactgcagcg ctggcccagt tgaacgctat
      241 gattttcgtt ttgcgcgtga agcgaagcga cgacaggaac gcttcgatcg cgcccacgat
      301 aatcgccgcc ggcgcgccgt aaagcagcag gatcagaaat acaaacgtgt cagagaccga
      361 gatctgcgaa ctgaaacggg gaatcggtac cgtgatgcgc gaggtgagca gcaacgtcat
      421 cgccacgagc agggcgaagc gggagtcaat cgccgcgagg tcaattcgcg cgatagagta
      481 cagaaaagcg aggcagccgg ttccagttac gacccagagg aatggcccga agaatctgtt
      541 tcttgtggtg ccaaggtctg acattgcgat ttgtgatcaa ggtgaggctt ctgggctacc
      601 ttaatcaggg cagatcgggg gaatagagaa tttagttttg cgcctgctcc attcttggga
      661 gaaagatggt ttcgtaagtg gcgcgaaagt gaaaaccgca cttgcgataa aaactttgcg
      721 caagcttgtt tgtttcgttc acgaggaggc agattgattt ggtctcttcg agcaggcgcc
      781 gcatcaggtc agacatgaag cgcaaaccgg caccatcggc gcggcgctct tcgcagatcc
      841 agatgccttc gagatagttg acttcgcggg tgcgcgaaat cacgtctgcc ttgaagatca
      901 acttgccgtt ttcaacgacc acccaggttc ggccttgttc gatacgacgc aagcagcgct
      961 tgcgaaaacc ttccggatca acctgcaacg ggttgactcc gctttccacg aacgcgagct
     1021 ccgcctgaac cggcatcacc agttccaact cggcggacgt cgcgcgtctt aaacccgcaa
     1081 cgggttcgcg tgcttcgatg ggccagctca actcatacaa ccactcgcgg caggcaagcc
     1141 gttgctgccg tccggccgca gcgtagtggc cccagaaatc ggcgacgcgt tctttttcac
     1201 ccatgatcat gtgggtgttc gcgcattgct gggccacctg ggccaacgcc gccaacgcgc
     1261 gatctgaaac tgtttccatc aacgttgcgt gaccgacgag tgcgacgcct tcgagctttc
     1321 cgttcctgtc gcggcagccg tagaacgttc cgcggttgag cgggctgacg atgccgttgt
     1381 cgtgaatcat gctcatcatc gtcacggtgt gaatcggccg ctgggccagg aactcgagca
     1441 cctctcgctc gtcgtcattc acgaggcaat cgacggagat cgtgccgacc ttcggcgcca
     1501 gttggtggct gagctcgttg gctctgggtg ctgtgcgtaa ctgtaacatt cgtctgcgtc
     1561 tccgacaggt agttccgggt ttccagttaa gggcgaataa cttagtagcc caggtagtct
     1621 gtgtcgtcgt cgggaacgat tgccatttcg gtagtctgat cgccgttgag catcgagttg
     1681 aacgcttgca ggattgcgtc gccgatgagc acgccatcgc cgatcaaaac accgtcgccg
     1741 atcagcacgc cgtcgccaat cagaacaccg tcagcgatca ggacgccgtc gccgaccagt
     1801 acgccggtcg gaatgaagac cacaccctgt ccaaatttgg tgccgttgct gacgtgcaat
     1861 gtgtcgccga gcaggacgcc gtcggaaatc atagtgatat cgccgacgag cacgccgagc
     1921 gcatcgccaa ccagcacgcc atcgccgacg agcacgccga gaccgtcgcc caccaaaa
//
LOCUS       DASWTX010000500         2494 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_399359, whole genome shotgun sequence.
ACCESSION   DASWTX010000500 DASWTX010000000
VERSION     DASWTX010000500.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2494)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2494)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2494
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_399359"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..273
                     /locus_tag="VGD38_07695"
     CDS             <1..273
                     /locus_tag="VGD38_07695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727933.1"
                     /translation="KGSIGKTDPAAGGTLEMCYTQGAAAPVVGPGVAQGAGAGAASAG
                     AAAASGGGLFGLGVPATIAIVAAGTAAGITPLFFPDDNTNPSPAAP"
     gene            307..1518
                     /locus_tag="VGD38_07700"
     CDS             307..1518
                     /locus_tag="VGD38_07700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727934.1"
                     /translation="MARIALALFATGACLLLMREAARIGFSRLLTRYALTVNSLPAAD
                     QAVQLTPSDPEAHRARALILNRLRRPADAVAALEIATSLRDGPEDLWIEFANTKEELG
                     DREGALSALDHAVRAAPYYAHTHWQRGNLLLRMDRYDEGFAELREAAARNRKYFPSLL
                     DLAWGLTADAEKTQAFVQFRNDEDRLAFARLLARKGKGAEVVDQVRLLTAPLSDENRD
                     ELTRLLSASNSSTGFAGFWAENKKVEEIANSSFEEAVFLNGSMAGWTLPRARTNPVVA
                     LDVSEKLSGQRSLQISFEGEWAPGAQLLSQTIVVRRGVAYRLGFAIKTKELVTGGPLR
                     IVLTDATDNQILAKSNAFPSATGAWQEWSVEFKAQSEPVVISLVRDNCTSSPCPIFGV
                     VWLDDFSLQKL"
     gene            1522..2214
                     /gene="tsaB"
                     /locus_tag="VGD38_07705"
     CDS             1522..2214
                     /gene="tsaB"
                     /locus_tag="VGD38_07705"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: protein motif:HMM:TIGR03725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HEY0727935.1"
                     /translation="MPVEPLILAVETATLSGSIALTRGDELIANVSGDPSVSHSNTLL
                     ADLDKLLSKTTHKLADIDLFAVAAGPGSFTGLRIGIATVKALAATLGRPCAAVPTLQA
                     VALAGGASETSVALLPAGRGEVFAQLFSVSADAVTALDEPSHISPQKMIDKYGSLETV
                     LWCGEGAQAQRELIESSAAGKHWRIAPRTEDLAQFVAILALRNFRQDLLVAPDALQAI
                     YVRPSDAELKVS"
     gene            2211..>2494
                     /locus_tag="VGD38_07710"
     CDS             2211..>2494
                     /locus_tag="VGD38_07710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727936.1"
                     /translation="MSAEHKAPAEETEIAIVRMTEHDLLEVVEIEEQSGLSRWGWAAY
                     YAELQGGNRELMLVAKPLAAPSLEQHQIAGYIVARETAGELHVNNIAVRD"
BASE COUNT          495 a          671 c          799 g          529 t
ORIGIN      
        1 aaagggtcaa tcggtaaaac cgatccggcg gcgggcggca cgctcgagat gtgttacacg
       61 cagggcgcgg cggctccggt tgttggtcca ggtgtcgcac agggcgcggg tgcgggcgcc
      121 gcctcggcgg gcgcggcggc agcgagcggt ggcggattgt ttggtctcgg cgtgcccgcg
      181 acgatcgcga tcgtcgcggc cggaaccgca gcaggcatca cgccactctt tttcccggac
      241 gacaacacca atccgagtcc tgctgctccg taattacgtt tgttgctgaa tccgcgccac
      301 agtcgtgtgg cccgaatcgc tctcgcgctg ttcgcgacgg gcgcgtgttt gctactgatg
      361 cgagaagccg cgcggatcgg cttctcgagg ctcctcacac gctacgctct caccgttaac
      421 tcacttcctg ctgccgacca ggcagttcaa ctcactccat ctgatcccga ggctcatcgc
      481 gcgcgcgcgc tgattctgaa tcgcctgcgc cgtccggccg acgctgtcgc ggcgctggag
      541 atcgcgacga gtctgcgcga tggcccagag gatttgtgga tcgagtttgc caacacaaag
      601 gaagagttag gcgatcgtga aggcgctttg tccgcactcg atcacgcagt tcgtgcggcg
      661 ccgtattacg cgcacacgca ttggcagcgc ggcaatctgc tgttgcgaat ggatcgttat
      721 gacgaaggct ttgccgagct tcgtgaagct gcggcgagaa acaggaagta ctttccaagc
      781 ctgctcgatt tagcgtgggg tctcaccgca gacgccgaaa agacccaggc gtttgtgcag
      841 tttcgtaacg acgaagatcg tctcgcgttt gcgcgtttgc tggcgcgaaa gggaaaggga
      901 gcggaagtcg tcgaccaggt ccgtttgctc actgctccgc tttccgacga gaatagagac
      961 gaactgacgc ggctgctgtc ggcttcgaat agttccaccg ggtttgccgg tttctgggcc
     1021 gagaacaaga aggtggaaga gatcgcgaac agcagttttg aagaagcagt gtttctgaac
     1081 ggctcgatgg ccggatggac gctgccgcgt gcgcgcacga acccggttgt tgcgctcgac
     1141 gtttcagaga aactcagcgg gcagagaagc ctgcagatta gttttgaggg tgaatgggct
     1201 ccgggcgcgc agttgctatc gcagacgatc gttgtgcggc gaggcgtggc gtatcgtttg
     1261 ggttttgcga tcaagacgaa ggaactcgtg accggcggtc cgcttcgtat cgtactgaca
     1321 gatgcgacgg ataatcagat acttgccaaa tcaaatgcgt ttccgtccgc gacaggcgcc
     1381 tggcaggagt ggagtgtcga gttcaaggcg cagtcggaac cggtcgttat tagtttggtg
     1441 agagacaatt gcacgtcgtc gccgtgcccg atttttggtg ttgtgtggct cgacgatttt
     1501 tcgttacaga agttgtgaga gatgcctgtt gaaccgttga ttcttgcagt cgaaacagca
     1561 acgctgtcgg gaagcatcgc gctcacgcgc ggcgatgaat tgatcgcgaa cgtctccggc
     1621 gatccatcgg tgtcgcactc aaacacgctc ctggcagatc tcgataaact gttgagtaaa
     1681 acaacacaca agctcgctga tatcgacttg tttgccgtcg cggccggacc gggaagtttt
     1741 actggtctac gaatcggtat cgcgacggtc aaagcattgg ccgcgactct gggccgtccg
     1801 tgcgccgccg tgccaacact ccaggcggtg gctttggctg gcggtgcttc ggaaacttca
     1861 gtcgcattgc tgcctgccgg acgtggcgag gtatttgcac aattgttttc ggtctcggcg
     1921 gatgctgtga cggcgctcga tgagccatca cacatctcgc cgcagaagat gattgacaaa
     1981 tatggttcgc tggaaacggt tttgtggtgc ggcgaaggcg cgcaggcgca acgcgagcta
     2041 atcgagagct cggcggctgg aaaacattgg cgtatcgcgc cgcgaactga agatttggcc
     2101 cagttcgtcg cgattcttgc gctgcgaaac ttcaggcagg atttattagt cgcgcctgat
     2161 gcgttacagg caatctacgt gcggccctcg gacgcggaat tgaaagtctc atgagcgccg
     2221 aacacaaagc cccagcagaa gagacagaga ttgccatcgt gcgcatgacc gagcacgatc
     2281 tgctcgaagt ggtggagatc gaggagcaat cgggcttgag tcgttggggt tgggcggcgt
     2341 attacgctga gttacagggc ggtaatcgcg agttgatgct cgttgcaaaa ccactcgccg
     2401 cgccaagcct ggaacagcat cagatcgccg gttacatcgt cgcgcgggaa acagcgggtg
     2461 aactgcacgt gaacaacatc gccgtgcgcg atca
//
LOCUS       DASWTX010000501         2820 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_244394, whole genome shotgun sequence.
ACCESSION   DASWTX010000501 DASWTX010000000
VERSION     DASWTX010000501.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2820)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2820)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2820
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244394"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1944)
                     /locus_tag="VGD38_07715"
     CDS             complement(<1..1944)
                     /locus_tag="VGD38_07715"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0727937.1"
                     /translation="MKTRISLRSAARFLSAALLIGVFALTAFAQGGTSAIRGSVKDPQ
                     GNVVAGANVKLINVTTNAERTTTTSDDGLFSFEAVQVGDYRVEVEAPNFKKGVVTEIH
                     ALIAKAVTVDVQLEIGAVSESVTVSTSSAELLVNREDGTLGSNFVNKQITQLPLEARS
                     VPNLLTLQTAATRDGYVAGARADQTNVTLDGVDINEAQTNAVTSGTADPADGTAIDNL
                     SPASGTVLRLNADAIEEFRVQTTNPNANQGRSAGAQVSLVTKGGSNEWHGSAFEFYRT
                     SAFAANDFFNNAAGVSRAPLIRHTFGGSLGGPIMKDRAFFFYSFEGDRIQRSVSVVRN
                     VPLASLGQGLVRFRNPGGGVTTLTAANIATIFPAVGTNPAAISLLAQAAAKYPANDFS
                     IGDQFNTAGFRFNAPTPVERNSHTAKFDFNLTSKQQAFIRASVIYDVIARERQFPDTP
                     APNIWSHPMGIAAGHTWTMTNNLVNTFRYGFTREAFSQQGDSADNSISFRFVFSPFGF
                     TRTLTRVTPVHNFTDDVSWVKGNHTLGFGTNIRTISNRRASLANSFDSAITNPSFYSG
                     GGASISNPINAVFPIAGSAVGVQNAVTAIIGRYSQYSGNFIFDRDGTLTQPGTPSARD
                     FATQDFDVYGQDSWKVTPNLTLTY"
     gene            complement(2206..>2820)
                     /locus_tag="VGD38_07720"
     CDS             complement(2206..>2820)
                     /locus_tag="VGD38_07720"
                     /inference="COORDINATES: protein motif:HMM:NF024748.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEY0727938.1"
                     /translation="VVLTKEKKVGGSGILNELSDNLRLTLRDAVNLMMLLSDNTATNL
                     TLDVLTTDAVNARMESLGFKNIKIMRKVFAGGESAAGKDPENKKYGLGMATPREMVLV
                     MEKLERGEIISPAASKEMLELMKREQGRNAIGRSLPDVPAASKYGALDRLRSSVAILY
                     TKKGKIAMAITCDDMPETMWSVDNPAYLLMSRLSAVLVDGLAKR"
BASE COUNT          592 a          744 c          842 g          642 t
ORIGIN      
        1 gtaggtaagc gttaagttcg gcgtaacctt ccacgagtcc tgaccgtaga cgtcaaagtc
       61 ctgcgtggca aagtcgcgag cgctcggagt gcctggctgt gtgagagtgc cgtcgcggtc
      121 gaagatgaag tttccggagt actgggaata cctgccgata atcgcggtca ccgcgttctg
      181 cacgccaaca gccgagcccg caatcgggaa gaccgcgttg attgggttgg agatactcgc
      241 gccgccgccg gagtagaacg acggattcgt gatcgcgctg tcgaacgagt tcgctaacga
      301 agcccgtcga ttcgagatag tacgtatgtt cgtgccaaag cccagggtat ggtttccctt
      361 cacccacgac acgtcgtcag taaagttatg taccggcgta acgcgggtaa gagttctagt
      421 gaacccaaac ggtgaaaaga cgaatcggaa actgatcgag ttatcagcag agtcgccctg
      481 ctggctaaac gcttctcgcg taaacccgta gcggaaggta ttgaccaggt tgttcgtcat
      541 ggtccacgtg tgacccgctg cgatacccat cgggtgggac cagatgttcg gagctggagt
      601 atcggggaat tgccgttcgc gagcaatcac gtcataaatg acgctggctc ggatgaacgc
      661 ttgctgctta ctggtaaggt tgaaatcaaa cttggcagtg tgcgagtttc gttcgaccgg
      721 agttggcgcg ttgaagcgga aacccgcggt gttgaactgg tcgccgatgg agaaatcgtt
      781 tgccggatat ttcgccgcgg cttgggccaa caacgaaatc gcggccggat tggtgcctac
      841 tgccggaaag atcgtggcga tgtttgccgc ggtcaaagtg gtgactccac ctccgggatt
      901 gcggaaacga accaggccct gcccgagact ggccagggga acgttgcgca cgaccgaaac
      961 agatcgctga atccgatcgc cttcaaagct gtagaagaag aaggcgcgat ctttcatgat
     1021 tggaccacca agcgagccgc cgaacgtgtg tcgaatcagc ggagctcggg aaacgccggc
     1081 agcgttattg aagaaatcat tagctgcaaa agccgacgtc cgatagaact cgaaagcact
     1141 gccgtgccac tcgttgcttc cgcccttggt tacgagcgag acctgcgcgc ctgccgaccg
     1201 gccctgatta gcgttcgggt tggtcgtttg cacgcgaaac tcttcaatgg cgtctgcgtt
     1261 caggcgtaac acagttccac tcgcgggcga caagttatca atggctgttc cgtctgccgg
     1321 gtcagcggtg ccgctcgtaa cagcgttggt ctgtgcttcg ttgatgtcca ctccgtcaag
     1381 cgtgacgttc gtttggtccg cgcgggcgcc ggcgacgtaa ccatcacggg ttgcggcggt
     1441 ctggagcgtc agcaggttcg ggacgctgcg cgcttccaac ggcaactgag taatctgctt
     1501 gttgacgaag ttggatccga gggtgccgtc ctcgcgattg acgagcagtt cggccgaact
     1561 cgtcgaaacg gtgaccgact ccgaaacggc gccgatctcc agttggacgt cgacggtaac
     1621 ggccttcgca atcagtgcat ggatttcagt gacgacacct tttttgaaat taggggcctc
     1681 gacttcgacg cgatagtcac caacctgcac tgcttcaaac gaaaagagac cgtcgtccga
     1741 ggtcgtagtc gtgcgctcgg cgttggtggt cacgttaatt aatttcacgt ttgcacctgc
     1801 gacgacgtta ccttggggat cttttactga accgcgtatt gcggaagttc caccctgcgc
     1861 aaatgccgtc agggcaaaga ccccgatcaa caaagcagcg cttaaaaatc gggcggcact
     1921 tctcaaggaa attcttgttt tcattgagtc ctccgatgca tttttgtctg cggatccgga
     1981 cctggaaagg gctgtgtcac tagatccgaa agatgagagg cggattaacc gtgaaaaaac
     2041 ttgccgattc gatccacttt cttgcagata ctattccgcg acagcgcagt taatactccg
     2101 ccacaaaaca ctcgtgtttt tcacgttcgg gtcaagaccg ttaaggtttt gtgccggaaa
     2161 gtatatccaa atttctggta gcgtctatag aaattcggac cggagctatc ttttggccag
     2221 tccgtcaact aagacggcgg aaaggcggga catcagcagg taggcgggat tgtcgaccga
     2281 ccacatcgtt tcgggcatgt cgtcgcaggt tatggccatc gcgatcttcc cttttttcgt
     2341 gtagagaatc gcgaccgaac tgcgcaggcg atcgagtgcg ccgtacttgc tggcggcggg
     2401 cacgtcggga agggatcggc cgatggcgtt gcggccctgt tcgcgtttca tcagttcgag
     2461 catctctttc gaagcggcgg gactgatgat ttcgccgcgt tcgagtttct ccatcacgag
     2521 caccatctcg cgcggcgtgg ccatgccgag gccgtacttc ttgttctcgg gatcttttcc
     2581 ggccgcgctc tcgccgccgg cgaagacctt gcgcatgatc ttgatgtttt tgaaaccgag
     2641 cgactccatg cgcgcgttga ccgcgtcggt cgtgagaacg tcgagagtta gattcgtggc
     2701 ggtgttgtcg ctgaggagca tcatgaggtt gacggcgtcg cgaagtgtga gacgaagatt
     2761 gtctgagagc tcattgagaa taccggagcc gccgactttc ttttctttcg tgaggaccac
//
LOCUS       DASWTX010000502         1572 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_244411, whole genome shotgun sequence.
ACCESSION   DASWTX010000502 DASWTX010000000
VERSION     DASWTX010000502.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244411"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1000
                     /locus_tag="VGD38_07725"
     CDS             <1..1000
                     /locus_tag="VGD38_07725"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY0727939.1"
                     /translation="DFNAQTVLLDNDQSLPYDVLVLAVGGVTNYAGVPGAEEFSLPFR
                     KIEHADTLRRLMVDALDHIPPEMPPQDVRRELTFALVGAGASGCELSTKMADLLKDAF
                     KRRALHGQPRVMLIEMGDRVVPGMGDDIRELVENGLRESDVEVHTLTRVINVTNDGLT
                     FEHDGQREHVKTACVVWLGGVRMNPLVDRLEVEKNKRGLIAIRPTFQLTQHDNVFALG
                     DIAYYPDAAPTLHGTAQLAFQEAGVAGDNVKALLDGKPLRSKHFEELGEAISLGTERA
                     AVLTGGKAFGGALARQARFALYTSRLPTWHHRLRVGASWFFEGTAPRPLLPLGLEH"
     gene            1302..>1572
                     /locus_tag="VGD38_07730"
     CDS             1302..>1572
                     /locus_tag="VGD38_07730"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEY0727940.1"
                     /translation="MAPAETPVLAAADGQIQKLFQSERGGTTIYQLSADRQLIFYYAH
                     LSRYADGLTEGKQVRQGEVIAYVGDTGNAGPGNYHLHFSIAVVSDP"
BASE COUNT          327 a          510 c          437 g          298 t
ORIGIN      
        1 cgacttcaac gcgcagacgg tcctgctgga caacgaccag tcgctcccgt acgacgttct
       61 ggtcctcgcc gtcggcggcg tcacgaacta cgccggcgtt cccggcgccg aagagttttc
      121 gcttcccttc cgcaagatcg aacacgccga cacgctccgc cgcctgatgg tcgatgcact
      181 cgatcacatt ccacccgaga tgccgcccca ggacgtgcgc cgcgagctca cgtttgcact
      241 cgtcggcgcg ggcgcgagcg gttgcgagct ctccacaaaa atggccgacc tgctcaagga
      301 cgcctttaaa cgccgcgcgc tgcacggcca gccgcgcgtg atgctgatcg agatgggcga
      361 ccgagtcgtg cccggcatgg gcgacgacat ccgtgagctc gtcgaaaacg gactgcgcga
      421 gtcggacgtc gaagtacaca cgttaactcg cgtcataaac gtcacgaacg atggtctaac
      481 gttcgaacac gacggccagc gggagcacgt gaaaacagca tgcgtggtct ggctcggcgg
      541 tgtccgtatg aacccgctgg tcgatcgcct cgaagtcgaa aagaacaaac gcggcttgat
      601 cgccatcagg ccaacgttcc aactcacgca acacgacaac gtcttcgcac tcggcgacat
      661 tgcctactac ccggacgcag caccgacgct acacggcacc gctcagctcg cgtttcagga
      721 agccggcgtc gccggcgaca acgtcaaagc tcttctcgac ggcaagccac tgcggtctaa
      781 acacttcgaa gagcttggcg aagcaatcag tctcgggacc gaacgcgccg cggtgctcac
      841 cggtggaaaa gcgttcggcg gcgcactcgc acgccaggca cgtttcgctc tgtacacgtc
      901 tcgcctgcca acctggcatc accggttgcg cgtcggcgca agctggtttt tcgaaggaac
      961 cgcgccacgc ccgctcctgc cgctcggttt ggaacattag ttgtcttatg taaccggtga
     1021 tgaaccggtt gcaagcattg tttttggttt tgttgcttgg atttattgcg gtcctctgcc
     1081 tcggaacagg tcgagttcct acgccatcgg ctgagtcttt gccatcggtt gagcctgtgt
     1141 catccgtgga gtctgtgtca tccgtggtcc aacctgtgac acagataaca cggatagaaa
     1201 aaccgataat cattccagtc gcaggcgttc gtccggacca actaacggat acattttctg
     1261 acagccgctc ggaaggccga acgcacgatg cgatcgacat catggcgcca gctgaaacac
     1321 cggtactcgc ggccgctgac gggcagatcc agaagctgtt tcaaagcgaa cgcggtggga
     1381 ccaccatcta ccagctcagc gccgatcgac aattgatttt ctactacgcg catctctcgc
     1441 gctacgccga tggtctaacc gaaggcaaac aagtgcgcca gggcgaagtg atcgcttacg
     1501 tcggcgacac cggaaacgcc ggccccggca attaccacct ccacttctcg atcgccgtcg
     1561 tctccgatcc ca
//
LOCUS       DASWTX010000503         1508 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_244429, whole genome shotgun sequence.
ACCESSION   DASWTX010000503 DASWTX010000000
VERSION     DASWTX010000503.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1508
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244429"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..924
                     /locus_tag="VGD38_07735"
     CDS             <1..924
                     /locus_tag="VGD38_07735"
                     /inference="COORDINATES: protein motif:HMM:NF013682.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004571 - mannosyl-oligosaccharide
                     1,2-alpha-mannosidase activity [Evidence IEA];
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 47 protein"
                     /protein_id="HEY0727941.1"
                     /translation="GMPYRYVNLKTGKTRDPISNPAETGTLLIEFGSLSKFTGKRIFY
                     DKAKRALVETYNRRSKIGLVGEWINVETGEWTNTDSHISGAIDSYYEYLLKCWLLFGD
                     RDCKRMWDESIVAINKYLAEEVTHTDLRAGPATLLWYGHADMHTGARRASIFGALDAF
                     FPAVLALSGDVRRAGRLQLSAYTMWDEAVIEPEGFDYRARKIISPGYPLRPEIVESTY
                     YLYKLTEDPSTYLYIGEKLWKDFVQHCRTDDAYAALKSVITKEKADSMQSFLFAETFK
                     YFYLLFAPDDTLDFRNVIFNTEAHPIRKFKQ"
     gene            complement(949..>1508)
                     /locus_tag="VGD38_07740"
     CDS             complement(949..>1508)
                     /locus_tag="VGD38_07740"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY0727942.1"
                     /translation="AGTKLKKQNVFDDFIAAAEWLIANKYTSSSKLAIQGGSNGGLLV
                     GAVANQRPELFRAVVEQAGVMDMLRFQKFTIGWNWIADYGSSEASEAEFKALYAYSPI
                     HNVKPGTKYPATLITTADHDDRVVPAHNYKYAAALQAAQGGDNPILIRIDTKSAHGAS
                     NTTKAIEQTRDIYAFLFENLGVEYK"
BASE COUNT          316 a          445 c          404 g          343 t
ORIGIN      
        1 ggcatgccgt atcgctacgt caatttgaaa accggcaaga cgcgcgatcc gatcagcaat
       61 cccgccgaaa ctggtacgtt gctgatcgag tttggctcgc tcagcaagtt caccggcaaa
      121 cgtatcttct acgacaaggc gaaacgcgcc ctggtggaga catacaatcg ccgctcgaag
      181 atcggtctcg ttggcgaatg gatcaatgtc gagacgggcg agtggaccaa cactgacagt
      241 cacatcagcg gcgcgatcga tagttactac gaataccttt tgaagtgctg gctgctgttc
      301 ggagatcgcg actgcaaacg gatgtgggac gagagcatcg tcgcgatcaa taagtacctc
      361 gccgaggagg ttacgcatac ggatctgcgc gctggtccag ccacgctgct ctggtacggt
      421 catgctgaca tgcacaccgg cgcccgacgt gcttcaatct ttggagccct cgacgcgttc
      481 ttccccgcgg ttttggcgtt gtcgggtgac gtgcgacgcg cgggacggtt gcaattgtcg
      541 gcctacacaa tgtgggacga agcggtgatt gaaccggaag ggtttgatta tcgcgcgcgc
      601 aagatcatct cccccggtta tccgttgcgg ccggagatcg tggaatcgac ttactatctc
      661 tataaactca ccgaggatcc gtctacttat ctctatatcg gggagaaact atggaaagac
      721 ttcgtgcagc actgccgcac tgacgatgct tacgccgcgt tgaagagcgt gatcacgaaa
      781 gaaaaagctg actcgatgca gagctttttg tttgcggaaa cgttcaaata tttctacctg
      841 ctattcgcgc ccgacgacac gctcgacttc cgtaacgtca tcttcaacac cgaagcccac
      901 ccgatccgga agttcaagca gtgatttgta aattggtcgt cctgacactt acttgtactc
      961 cacgcccagg ttctcaaaca ggaacgcata gatgtcgcgc gtctgctcga tcgccttcgt
     1021 cgtgttgctc gcgccgtgcg cagacttcgt atcgatcctg atcaggatcg gattgtcgcc
     1081 accctgcgcc gcctgcaacg ccgccgcgta cttgtagttg tgcgccggca cgacgcgatc
     1141 gtcgtgatcc gcggtcgtga tcaacgttgc cggatacttc gttcccggct tcacgttgtg
     1201 aatcggcgaa tacgcataca acgctttgaa ctccgcttcg ctcgcttcac tcgaaccgta
     1261 gtccgcgatc cagttccaac cgatcgtgaa cttctggaac cgcagcatgt ccatcacgcc
     1321 tgcctgctcc acgactgcgc ggaacagttc gggacgttga ttcgcaaccg cgcccaccag
     1381 cagtccgccg ttcgagccac cctgaatcgc gagcttgctc gacgaggtgt acttgtttgc
     1441 gatcaaccac tcggccgcgg caatgaagtc gtcaaacacg ttctgcttct tcagcttcgt
     1501 gccggctt
//
LOCUS       DASWTX010000504         1882 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_399443, whole genome shotgun sequence.
ACCESSION   DASWTX010000504 DASWTX010000000
VERSION     DASWTX010000504.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1882
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_399443"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1001
                     /locus_tag="VGD38_07745"
     CDS             <1..1001
                     /locus_tag="VGD38_07745"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEY0727943.1"
                     /translation="TPAPVNLAFEKQIPTWMNETNVPAVGIGIIENGKLKYAKVFGER
                     KKGVPSKELSPSSTIFQVASLTKPIVEILTLQLVTAGEWKLDEPLAKYWIDPDVQNDP
                     RHKKLTTRHVLTHQSGFPNWRSMNASKKLEFLSDPGAKVNYSGEGLEYLRRALEKKFN
                     QPLEQLAQKRLFQPYGMKNTRFFWDASIDESKFAVAHNAEGKPYEIHKNTTANAADLL
                     LTTIDDYSKFAISVLERKGLSQAVFDDMVRPQVPYPSGKNLFFGLGWMLMPELSNGEY
                     ALIHTGSDPGVSTVVVLFPKSRRGLIVFTNGDNGVKVWTRILAEAFDVGKEMLQRA"
     gene            1028..1819
                     /locus_tag="VGD38_07750"
     CDS             1028..1819
                     /locus_tag="VGD38_07750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727944.1"
                     /translation="MRLKNLLVSLVFILAISATTTTAQQRQDWSGFKDLTFEVTTPKK
                     RYVQLQPVPLVLTLSNQTDRVLKGHSALAFYANHVNVWTRAEGAEWRKIDQLSMLRAL
                     IYVNPRDMSPGDKFTDTQLLNLQIEKIFPQPGMYDLKAVIMSADGLQTVESRPIRFRI
                     EAPEGADLEAYNFLHAHTNPEYFYTGSGLVRNKTAEQTLETFVAKFEETAYGNDARFL
                     LGQLRFATRDYEAARLLFERLAKTPDFALAASAKEYLARIQKRQP"
BASE COUNT          482 a          539 c          481 g          380 t
ORIGIN      
        1 ccactccggc acccgtaaat ctcgcattcg aaaagcaaat cccaacgtgg atgaacgaga
       61 caaacgttcc cgcagtgggt atcggcatca tcgagaacgg aaagctcaaa tacgcgaagg
      121 tctttggtga acggaagaaa ggtgtccctt ccaaagagct atcgccgtca agcacgatct
      181 ttcaggtcgc ttcattaacg aagcccatcg tcgagattct cacgttgcaa ctggtgacag
      241 cgggagagtg gaagcttgac gagccgctcg cgaagtattg gatcgacccg gacgtgcaga
      301 acgatccgcg tcacaagaag ctcacgacgc gccacgtcct gacgcatcaa tcaggctttc
      361 caaactggcg ttcgatgaac gcgtcgaaaa aactcgaatt cctttccgac cccggtgcga
      421 aagtgaacta ttcgggcgaa ggtctcgagt acctgcgccg cgcgctcgag aagaaattca
      481 accagccact cgagcaactc gcgcagaaac gactcttcca accctacggc atgaagaaca
      541 cgcgtttctt ctgggacgcg tcgatcgacg agtcgaagtt tgcagtcgct cacaacgccg
      601 aaggcaaacc ctacgagatt cacaaaaaca ctactgcaaa cgcggccgat ctcctgctca
      661 cgaccatcga cgattacagc aagtttgcga tcagcgtgct cgaacgaaag ggtctctcgc
      721 aagcggtatt tgacgacatg gtccggccgc aagttcctta cccgagcggg aagaatctgt
      781 tcttcggttt gggctggatg ctcatgcctg agttgagcaa cggcgagtat gcgttgattc
      841 acaccggcag cgatccgggc gtcagcacgg tggtggtcct gtttccgaaa tcccggcgcg
      901 gcctgatcgt gtttacaaat ggcgacaacg gtgtaaaagt atggaccaga atcctcgcgg
      961 aagcgtttga cgtcggcaaa gagatgctgc aacgagccta gaaacgcgac ttctcgggag
     1021 agcgcaaatg agacttaaga acttgcttgt cagtctcgtg tttatcctgg cgatctccgc
     1081 gaccacgaca acggcacaac agcggcagga ctggtccggt ttcaaagacc tgactttcga
     1141 agtcacaacg cccaagaagc gctacgtaca actgcaaccg gttccgctcg tcctgacact
     1201 ttccaatcaa acggatcgcg ttctaaaggg ccactcggca ctggcgtttt atgcaaatca
     1261 tgtaaacgtc tggacccggg ccgaaggagc agagtggcgc aagatagatc aactatcaat
     1321 gttgcgggca ctcatctatg taaacccgcg cgacatgagc cccggcgaca agttcaccga
     1381 cactcagctt ctcaatctgc aaatagaaaa gatctttcct caaccgggaa tgtacgacct
     1441 caaagccgtg attatgagcg ccgatggtct gcaaacagtc gagtcacggc ccatcagatt
     1501 ccgcattgaa gcgcccgaag gagcagatct cgaagcctac aatttcctgc acgcgcacac
     1561 gaaccccgaa tacttctaca ccggctccgg cctggtccgg aacaagaccg cggagcaaac
     1621 gctcgaaacc tttgttgcca aatttgaaga gaccgcttat ggtaacgacg cgcgcttctt
     1681 gttgggccag ctccggttcg ccactcgcga ctatgaagcc gctcgtctcc tgtttgaaag
     1741 actcgcgaag accccagact ttgcgttagc tgcgagcgcc aaagagtacc tcgcaaggat
     1801 tcagaaaaga caaccatagg ttttatgttc cctcaagtga acccgcatta tctcccttcg
     1861 cgccgaatcg tgtttgtttt cg
//
LOCUS       DASWTX010000505         2621 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_222681, whole genome shotgun sequence.
ACCESSION   DASWTX010000505 DASWTX010000000
VERSION     DASWTX010000505.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2621
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222681"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1831
                     /locus_tag="VGD38_07755"
     CDS             <1..1831
                     /locus_tag="VGD38_07755"
                     /inference="COORDINATES: protein motif:HMM:TIGR00976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HEY0727945.1"
                     /translation="QGALLFILLVVQLIAVQAQESDPVFDATEAMIPMRDGVRLYTQV
                     YSPRYRNEQLPFLLLRTPYGAGQLDSSRIANSMTELTAEGFIIVVQDIRGRFKSEGQF
                     VMLRQPRESKDAKAIDESTDAYDTIEWLLKNVPKNNGRAGMAGTSYGAWLTVMGTLEP
                     HPALKAAVQQASPADMWIGDDFHHNGAFRLSYGFEYAYMMESSKEITDPSNVIDTFDT
                     YDWYLRLGSLANVNAKLVHNKLPTWNDFVNHPNYDAFWKRQGFAPWLNRVTVPILNVA
                     GWWDQEDFYGPIKIYELLERHDSKNQNFLVVGPWNHGGWSRSDGQKLGKIDFGSKTSE
                     YYRQNVFVRFLAYHLKSKGTPDFPEALTFRTGANQWERHDTWPPKSTTTRPLYFHADG
                     KLSFTPPRAGVNAFDSYISDPAKPVPYRPRPIELRTGWSTWLVEDQRFVDHRPDVLTW
                     STEPLDADVVVSGKIIAKLFASTTGTDADWIVKVIDVYPEKYAADPKMGGFQLMIAGD
                     VLRGRFRNSFEKPEPITPNAVVPYEIGFPANDHVFLKGHRIMVQVQSTWFPVIDRNPQ
                     RFVPNIFNAKDSDFQKATQRIYRSGRHASHIALPLMTTTTSQR"
     gene            complement(1897..2562)
                     /locus_tag="VGD38_07760"
     CDS             complement(1897..2562)
                     /locus_tag="VGD38_07760"
                     /inference="COORDINATES: protein motif:HMM:NF042732.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6683 family protein"
                     /protein_id="HEY0727946.1"
                     /translation="MIAVIALLLFSFAPVQTNDRIGQTWKGPDVSVNRKLFEDDSRAP
                     QGNPAAVKFTPAGDSGVIKTLSEALGSTPAERAALTEAFTQFKQGYEAEAAKAGKANN
                     LAVTMTFFIVANVVAYQQSEMPTDADTVEMSQSMERRMSRIPAFASMSNAEKQRMNDW
                     LLCMAGFALTNYMSAKQNNDTQGLATIKQFAEYSLRLALGVEAAKLTLSGPRIKLQAD
                     APK"
BASE COUNT          553 a          769 c          737 g          562 t
ORIGIN      
        1 acagggcgcg cttctattca tactgctggt ggtccaactg atcgcggttc aggcgcagga
       61 gtctgatccg gtctttgacg ccacggaagc gatgattccg atgcgcgatg gcgtgcggct
      121 ctacacgcaa gtgtacagtc ctcgatatcg caacgagcag cttccctttt tgctgctcag
      181 aacaccgtac ggcgcgggcc agctcgattc gtcgcgcatc gcaaactcga tgaccgagtt
      241 gactgccgag ggtttcatca tcgtcgtgca ggacattcgc gggcgtttca agtctgaagg
      301 ccagttcgtc atgctgcgtc agccgcgcga gtcgaaagat gcgaaagcaa tcgacgaaag
      361 caccgacgct tacgacacga tcgagtggtt gttgaagaac gtgccgaaga acaacggccg
      421 agccggtatg gccggcacga gttacggcgc gtggctcacg gtgatgggca cgctcgaacc
      481 gcatccggcg ttgaaagcgg cagtgcagca agcgtcgccg gcggacatgt ggatcggcga
      541 cgactttcat cacaacggcg cgttccgttt gagttacggc tttgagtacg cctatatgat
      601 ggagtcgtcg aaagagatca ctgacccgtc caacgtgatc gacactttcg acacttacga
      661 ttggtatctg cggctcggtt cgctcgcgaa cgtaaatgcc aagctggtgc acaacaagct
      721 gccgacctgg aacgatttcg taaaccatcc gaactacgac gcgttctgga aacgacaggg
      781 cttcgcgccg tggctcaatc gcgtgacggt gccaatcctg aacgtcgccg gctggtggga
      841 tcaggaagac ttctacggtc cgatcaagat ctacgaacta ctcgaacgcc acgactcgaa
      901 gaatcaaaac tttctcgtcg ttggtccatg gaaccacggc gggtggtcgc gtagtgatgg
      961 ccagaagctc ggcaagatcg acttcggcag caagacgtca gagtattacc gccagaacgt
     1021 gttcgtgcgt tttctcgcgt atcacctgaa gagcaaaggc acgcccgatt ttcctgaagc
     1081 actgacgttc cgtaccggcg cgaatcagtg ggaacggcac gacacgtggc cgcctaagtc
     1141 aaccacgacg cggccgctct attttcacgc tgacggaaaa ctctcgttca cgccgccacg
     1201 tgccggcgtg aacgcgttcg acagctacat ctcagatccg gcgaagccgg tcccgtatcg
     1261 cccgcggccg atcgaattgc gaaccggatg gagcacttgg ctggtcgagg atcaacgctt
     1321 cgtcgatcat cgtcccgacg tactcacgtg gtccaccgaa ccactcgacg ccgacgttgt
     1381 cgtttccggc aagatcatcg cgaagctctt cgcgtcaaca accggcaccg atgctgattg
     1441 gatcgttaaa gtgattgacg tgtacccgga gaagtacgcg gctgatccga agatgggcgg
     1501 gtttcagttg atgattgctg gtgacgtctt gcgcggccgg tttcgaaaca gttttgaaaa
     1561 gcctgaaccg atcacgccga atgcggtcgt tccgtatgag atcgggtttc cggccaacga
     1621 tcacgtgttc ctgaaaggtc atcgcatcat ggtgcaggtg cagagcacgt ggtttcccgt
     1681 gatcgatcgc aacccgcaac gcttcgtgcc gaatattttc aacgcgaagg attccgattt
     1741 tcaaaaagca acgcaacgaa tctaccgctc cggccgccac gcgtcgcaca tcgcactgcc
     1801 gctaatgacc acgaccactt cacagcgcta acgccgtttt gagttcaagc tttagcttgc
     1861 cgacgcagcc taaaggctga actcaaaacg cctttgtcac tttggggcat cagcctgcag
     1921 tttaattcgt ggacccgaca acgtcagctt cgcggcttcg acacccaacg cgagccgcag
     1981 cgagtattcg gcgaattgct tgatcgtcgc gagcccctgc gtgtcgttgt tctgtttcgc
     2041 gctcatgtag ttcgtcaacg cgaaaccagc catgcacagc agccagtcgt tcatgcgctg
     2101 cttttccgcg ttggacatcg acgcgaacgc cggaatgcgc gacatccttc gctccatcga
     2161 ttgcgacatc tcgacggtgt cagcgtccgt aggcatctcg ctctgctgat acgcgacgac
     2221 gttcgcgacg ataaagaacg tcatcgtcac cgcgaggttg tttgccttcc ctgccttcgc
     2281 ggcttccgct tcgtagccct gcttgaactg tgtaaacgcc tcggtcagcg cggcgcgttc
     2341 cgcgggcgtg cttcccagcg cttcggaaag cgtcttgatg acgcccgagt caccggcggg
     2401 tgtgaactta acggctgcgg gattaccttg cggcgcgcga gagtcgtctt cgaacagttt
     2461 gcggtttacg gaaacgtccg gacctttcca cgtctgccct atgcgatcgt tcgtttgaac
     2521 cggagcgaaa gaaaacaaca gcagtgctat tacggcgatc atgcctgcat agtcttacac
     2581 tagtcgtcct tccaatcaaa cacgcagccg ggcgaggtct c
//
LOCUS       DASWTX010000506         1718 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_116116, whole genome shotgun sequence.
ACCESSION   DASWTX010000506 DASWTX010000000
VERSION     DASWTX010000506.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116116"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..550
                     /locus_tag="VGD38_07765"
     CDS             <1..550
                     /locus_tag="VGD38_07765"
                     /inference="COORDINATES: protein motif:HMM:NF024909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0727947.1"
                     /translation="SAVHATLALFSAAARAGDNAGLIVFGRRIKSYLPPNRGRDHIDA
                     ALEALYAVEPEMIEPSYSHAFEFIAANSKRRSLVILLTDLVDEEGSKELLTSLNLLRP
                     RHLPLVVTIADRDLKAVVQGVPETVHDLFTQSVSEEIIHHREAALRMVESVGGLALDV
                     TAAALAPALLETYLKVKERGLL"
     gene            complement(542..1513)
                     /locus_tag="VGD38_07770"
     CDS             complement(542..1513)
                     /locus_tag="VGD38_07770"
                     /inference="COORDINATES: protein motif:HMM:NF014052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stage II sporulation protein M"
                     /protein_id="HEY0727948.1"
                     /translation="MPSDRFISQRKNAWQRLEDLLKLLDHSSLRRLGREEVRELGRIY
                     RRTASDLAIARAESRDPRLVNYLNSLVIRAHGRIYRADAQGGKRIRRYFTHELPQTFR
                     RTWRYTFVAFATFTLFAVLSFVGTKIDPDFSELVGVDPAFRELNIETKTHWWESLNRG
                     NQIGASAIMTNNIQVTIYTFAFGALAGVGTLFFLAYNGANIASVLALTYQAGFGNDLV
                     TFMVAHGVVELSCIFIAGGSGLLIGSAMIMPGDLTRADALRTRGMEAVRLMIGVALLL
                     VVAGTIEGFVSPAEIDPRIKYSVAALTGLAMYSYLLFVGHEPKTESE"
BASE COUNT          361 a          492 c          519 g          346 t
ORIGIN      
        1 ctcggcagtg cacgcgacgc tcgcgctgtt ttccgcggct gcgcgcgcgg gggacaacgc
       61 cggactgatc gtgtttggcc gccgcatcaa gagttacctg ccgccgaacc gtggccgcga
      121 tcacatcgac gccgcactcg aagcgctcta cgctgtcgag ccggagatga tcgagccttc
      181 gtacagccac gcgtttgaat tcatcgccgc caacagcaaa cgcagatcgc tggttatcct
      241 gcttaccgat ctcgtagatg aagaaggttc aaaagagcta ctcacgtcgc tcaatctgct
      301 tcgcccgcgt cacttgccgt tagtcgtcac gattgccgat cgtgatctga aagcagtggt
      361 gcagggcgtt cccgagacgg tccacgatct gttcacgcag tcagtgtctg aagagatcat
      421 tcatcatcgt gaggcagcgc tgcgaatggt cgagtcggtt ggcggtctcg cgctcgacgt
      481 gaccgcggcc gcattggcgc cggcattgtt ggaaacgtat ttgaaggtga aggaacgcgg
      541 cttactctga ttccgttttt ggctcgtgac cgacgaagag caggtagctg tacatcgcga
      601 gcccggtcag cgctgcgacg ctgtacttga tccgcggatc gatttccgcc ggcgaaacaa
      661 atccctcgat agttcccgcg accaccagca agagcgctac gccaatcatc aaacgcaccg
      721 cttccatgcc gcgcgtccgc aaggcatcag cgcgcgtcag atcgcccggc atgatcatcg
      781 cgcttccgat caataaaccc gaaccaccgg cgatgaagat acacgacagt tcgacgacgc
      841 cgtgcgcgac catgaacgtt acgaggtcgt tgccgaaacc ggcctggtaa gtcagcgcga
      901 gcactgaagc gatgttggcg ccattgtacg cgagaaagaa aagcgttccg acgccggcta
      961 acgcgccgaa tgcaaacgtg tagatcgtga cctgaatgtt gttggtcatg atcgcgctgg
     1021 cgccgatctg gttaccacgg ttcagcgatt cccaccagtg agtcttggtt tcgatattca
     1081 actctcgaaa agccggatcg acgccgacga gctccgagaa atcaggatcg atcttggtgc
     1141 ctacaaagct cagcaccgcg aagagagtga acgtcgcaaa cgcgacaaac gtgtagcgcc
     1201 acgtgcggcg aaacgtttgc ggcaattcgt gcgtgaagta acggcgaatt cgtttgccgc
     1261 cctgcgcgtc cgcgcgatag atgcggccgt gcgcgcggat gacgagactg ttcagatagt
     1321 tcacgagccg cgggtcgcgc gactccgcgc gagcgatggc caggtcggaa gcggtgcggc
     1381 ggtagatgcg tccgagctcg cgtacctcct cgcggcccaa acgtctaagc gacgagtggt
     1441 cgagcagctt cagcaagtct tcgagccgtt gccaggcgtt tttgcgttga ctgatgaagc
     1501 ggtcggaagg catcttgtcg tagtgtaact ttgctccgtt caaagtcaac gaaaagatgc
     1561 ggctggtcga atgtgtgccc aatttcagtg aagggcgaag gcctgaaacg gtgcggcaga
     1621 ttgctgaggc aatcgcagcg gtggagacgg cgtgtgtgct ggacatgcat atcgatccgg
     1681 atcacaaccg gtctgtgatc acgttcgttg cttcgcct
//
LOCUS       DASWTX010000507         2518 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_312476, whole genome shotgun sequence.
ACCESSION   DASWTX010000507 DASWTX010000000
VERSION     DASWTX010000507.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2518
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_312476"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1452)
                     /locus_tag="VGD38_07775"
     CDS             complement(<1..1452)
                     /locus_tag="VGD38_07775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727949.1"
                     /translation="MDRLRLFVWQFVVIAIALAGGVPASAQTAATSDGWVVLPVSDYI
                     ALKRAAFPSDPEPAPPPVEATLSRIDYELKIDGDLATGEARLTVDVIKNGWVRVPLPA
                     GLMVRDAQLDGKPVNLVSGSAQEGGGRMDVLLSKAGRSVLTLKIVAEVSTVAGTDILK
                     LPVSNSAVSHAKIELVRQGVVVRITGGLLLEHSESATGSRWVANGKGNEALTFAWRRK
                     VDDSRLNQPLRMRGVLTQLVGLGEDATQVNAEVQLDVLQGVAQDVHVQLPEQFTINQV
                     SGAMVADWDVKDRDLKVSFIEPVQNSVRFTLSGELRIPRAGKLDVPLIRLPSVERESG
                     GIAVEVLGAGEIKERKPSGLEEAEASELGRLIASRQSPSLLAFRLLPGDGKTIRTLSL
                     DVARYTPQAVLTANIEEAEYKALVAVDGKVLVQSRFAVRNNQRNFLKLTLPPTAQLWS
                     ASVAGRPIRPGRAPDGSLLLPLEKSRAGGDAPPF"
     gene            1563..2231
                     /locus_tag="VGD38_07780"
     CDS             1563..2231
                     /locus_tag="VGD38_07780"
                     /inference="COORDINATES: protein motif:HMM:NF012900.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEY0727950.1"
                     /translation="MKPTENPRVKICCIQSIDEAWMAIEHGASAVGLVSAMPSGPGPI
                     AEELIGEIAVKIPPGVSSFLLTCLEDAEAIIDQQRRLRVNTIQICDRLPAGSYRRLRE
                     ALPGVSLVQVVHVTGPEAVDEAIAIAPEVDAILLDSGNQSLAIKELGGTGRTHDWRLS
                     RAIREAIDVPLFLAGGLKPENVAEAIGEVRPFGVDACSGLRIEGLLDPQKLAAFFEAV
                     RTSA"
     gene            complement(2215..>2518)
                     /locus_tag="VGD38_07785"
     CDS             complement(2215..>2518)
                     /locus_tag="VGD38_07785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727951.1"
                     /translation="NFRVQGRTAQPITPGGVRTATNRNTARKDNEYFSFDWRLQRPIR
                     LSERFNLIPIIEMFNTFNNANNINPLVAPGLFNFDGFLRQGVGDPRQVQLAVKLTF"
BASE COUNT          488 a          714 c          782 g          534 t
ORIGIN      
        1 gaacggaggc gcatcgccgc cggctcgtga cttttcgagt ggtaacaaca gcgaaccgtc
       61 cggcgcgcgt cccggcctga tcgggcgtcc ggccaccgaa gcgctccaca actgcgccgt
      121 cggcggcagc gttagtttca aaaagtttcg ctggttgttg cgcacggcaa accgcgattg
      181 gaccagcacc ttgccgtcaa ctgcgaccaa tgctttgtat tccgcttctt cgatgtttgc
      241 agtgagcact gcctgcggcg tgtaacgcgc aacgtcgagc gagagcgtgc ggatcgtctt
      301 tccatcgccg ggcagtaatc tgaatgcgag caacgaaggc gattggcggc tcgcgatcaa
      361 gcggcccagt tccgacgctt cggcttcttc caagccactc ggcttgcgct ccttgatctc
      421 gcccgcgccg agcacttcaa cagcaatgcc accgctctca cgttcaaccg acggcagacg
      481 aatcaacggc acgtcgagct tgccggcgcg cgggatgcgc aactcgccac tcaacgtaaa
      541 cctcacgctg ttctgaacgg gttcgataaa cgagactttt agatcgcgat ccttcacatc
      601 ccaatccgca accatcgcgc ccgacacttg attgatcgtg aactgttcgg gcagttgcac
      661 gtgaacgtcc tgcgccacgc cctgcaacac gtcaagctgc acttcggcgt tgacctgcgt
      721 tgcgtcttca ccaagaccga cgagttgcgt gagcacaccg cgcattctga gtggttgatt
      781 caaacgcgaa tcgtcgacct tgcggcgcca tgcaaacgtg agcgcctcgt tgccttttcc
      841 attcgcgacc caacggctgc cggttgctga ttccgaatgt tcgagcagca gcccgccggt
      901 gatgcgaacg acgacgcctt gtctgacaag ttcgatcttg gcgtgtgaaa cggcggagtt
      961 gctgaccgga agtttcagga tgtctgtgcc cgcgacggtg ctcacctccg caacgatctt
     1021 caacgtcaac acggatcgtc cggccttcga caacaacaca tccatgcgtc cgccaccctc
     1081 ttgtgcgctt ccgctgacaa gattcaccgg cttgccgtcg agctgcgcgt cgcgcaccat
     1141 caggcccgcg ggcagcggca cgcgcaccca gccgttcttg atcacgtcga cagtcaatcg
     1201 agcttcaccg gtcgcgagat cgccgtcgat cttgagctcg taatcgatgc gcgagagtgt
     1261 tgcttcaact ggcggcggcg cgggttccgg gtcggaggga aatgcagcgc gtttgagtgc
     1321 gatgtaatca gagactggaa gaacaaccca tccgtcagag gtcgcggcag tttgcgcact
     1381 agccggtact ccgccggcaa gtgcgatggc aattacgaca aactgccaca cgaacagacg
     1441 cagacggtcc attggacttt ctcctttgca gaattgtgct ttagttttac gggagactgt
     1501 ggcgagaaat ccgagtgccg cgcggtatga tgcgacggga ttcaagaaag gtgtccgagg
     1561 aaatgaagcc taccgaaaac ccgcgggtga agatctgttg tattcagagt atcgacgagg
     1621 cctggatggc catcgagcac ggcgcttcgg cggtcgggct cgtgtcggcg atgccgagcg
     1681 gtccgggtcc gattgcggaa gaactgatcg gggagattgc ggtgaagatc ccgccgggtg
     1741 tgagctcgtt tttgttgacg tgtctcgaag acgcggaggc cattatcgat cagcagcgac
     1801 gtttgcgtgt gaacacgatt cagatctgcg atcgtttgcc ggccggaagt tatcgacgtt
     1861 tgcgtgaagc gttgccgggt gtgtcgctgg tgcaggtggt ccatgtcaca gggccggaag
     1921 ctgtcgacga agcgatcgcg atcgcgccgg aggttgatgc gatcttgttg gactcgggaa
     1981 atcagtcgct cgcgatcaag gagctgggcg gaacgggccg cacgcacgat tggcgtttga
     2041 gccgcgcgat cagggaagcg atcgacgtgc cgttgttttt agcgggtgga ttgaaaccgg
     2101 agaacgtggc ggaagcgatc ggggaagtgc ggccgtttgg tgttgatgct tgcagcggtc
     2161 tgcggatcga ggggctactc gatccgcaga agctcgctgc gttttttgaa gctgttagaa
     2221 cgtcagctta actgccaact gcacctggcg cggatcgccc acgccctgcc gcaggaagcc
     2281 gtcgaagttg aagagtcccg gcgcgaccag cgggttgatg ttgttggcgt tgttgaaggt
     2341 attgaacatc tcgatgatgg gaatcagatt gaagcgttcg ctcaatctga tcggccgttg
     2401 aaggcgccag tcaaacgaga agtattcatt gtctttgcgc gccgtgttgc gattcgttgc
     2461 ggtgcgcaca ccgcccggtg tgatcggttg ggccgtgcgt ccctgcacgc ggaaattt
//
LOCUS       DASWTX010000508         4829 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_312516, whole genome shotgun sequence.
ACCESSION   DASWTX010000508 DASWTX010000000
VERSION     DASWTX010000508.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4829)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4829)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4829
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_312516"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..351)
                     /locus_tag="VGD38_07790"
     CDS             complement(<1..351)
                     /locus_tag="VGD38_07790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727952.1"
                     /translation="MPARYDCTQIKQFAQSVITDGFCVLPEHFSPKKLDHWRQSFLPL
                     LERHIAREGHLQNRGPSRYYVTLPFTDPFADSSIYEDDDVLAVVEQLVGTDAVMCQLA
                     TDTPLLGSTTQDIHR"
     gene            482..970
                     /locus_tag="VGD38_07795"
     CDS             482..970
                     /locus_tag="VGD38_07795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727953.1"
                     /translation="MQKSLLGFLLVFGIIVSQGVTASAQQSVIGYWKTGGVGTINEVN
                     TVTGQTKNRRGQMFSYTFAADGTYSFVGYMESTMFGCTTSLFNEINGRYLVDGTTIFL
                     NPARDFWKNTYSCFPNSNKSQTKVPTKKSLEFSFKKDEYGKDFICLNDGGAETCYRRE
                     QQ"
     gene            1194..1820
                     /locus_tag="VGD38_07800"
     CDS             1194..1820
                     /locus_tag="VGD38_07800"
                     /inference="COORDINATES: protein motif:HMM:NF015534.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Type 1 glutamine amidotransferase-like
                     domain-containing protein"
                     /protein_id="HEY0727954.1"
                     /translation="MSPLKSILLLADSELLFYRDKGQLLLDRVVKEKDLDQLKAAYIG
                     ASNGDHPDFYAIFVAAMEGVGVSNCRMIPSSLTEEDLAFLNDAEIILLAGGDVEAGWR
                     VFLANGLNQHIVRRYSEGVSLIGISAGAVQLGLCGLAADGSLVETFALIPFVIGAHEE
                     SDNWRTTRELLRLSGSKSAIGLPKGGGAIYHPDHTLEPLRYPFVKLGV"
     gene            complement(1864..2349)
                     /locus_tag="VGD38_07805"
     CDS             complement(1864..2349)
                     /locus_tag="VGD38_07805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727955.1"
                     /translation="MKRILNVTVLTLTAFVLLGTISVMAIERPFAFNANGVATFIADE
                     AGNPVSANVSSSGTATHLGLTTTVGTITFSPDPANPGRLLTHGTGTMTSANGDQVQLE
                     LNGALVPSPGSPTATDKFTVRFVGGTGRFAGAHGTGTGIVVVNLLTGAFEITIVGDID
                     F"
     gene            complement(2618..3325)
                     /locus_tag="VGD38_07810"
     CDS             complement(2618..3325)
                     /locus_tag="VGD38_07810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727956.1"
                     /translation="MTYRSLDSKKILATIETLSRRIVERFPGSGLDKVCQELLTVAEE
                     SQRRSAWIAKPQKTLRIITGVLVAVLIVVLVLVLANASLPRNGFDLVVLVQASEAGLN
                     VFLLLSAAILFLVTAETRIKRRRALKAIHELRALAHVIDMHQLTKDPEQLLAQRIETP
                     SSPKRNLSPAELGRYLDYCTEMLSLIGKIAALYVQKFDDPVALAAVNEVEDLTTGLSR
                     KIWQKIMIINSDTKPAG"
     gene            3428..4027
                     /locus_tag="VGD38_07815"
     CDS             3428..4027
                     /locus_tag="VGD38_07815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727957.1"
                     /translation="MSFDLYLRGDNLALANVLEHLDNYPEFERQELPDSAYALVNPST
                     GVYCYFRLDDDDTASSRGKSLCFSLNYNRQTFFALETLPLVESLCKRFQLVVEDPQEE
                     VVGPASLNELIKSWRVHNERAVKSIEAQGMALNYMHESKANEWWEYARVREKLSTDLG
                     DSVFVPEVFIIKRASEEPFRMIVWPEGNRQPILQVAGSR"
     gene            4256..>4829
                     /locus_tag="VGD38_07820"
     CDS             4256..>4829
                     /locus_tag="VGD38_07820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015570095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY0727958.1"
                     /translation="MQAAAPADLTSRASHDNLLVVFGGLLLVMLLAALDSTIVATALP
                     TIVGEFGGLAHISWVVTAYLLAQTIVTSIYGKLGDLYGRKRVLQFAIVIFLIGSVLCG
                     LSQSMTHLIIFRAVQGFGGGGLIVTTQAVVADIVPARARGRYQGVFGAAFGFASVAGP
                     LVGGYFTTHWSWRWIFYINLPVGIIALVVLA"
BASE COUNT         1071 a         1271 c         1332 g         1155 t
ORIGIN      
        1 gcggtgtatg tcctgagtcg ttgatccaag cagcggcgtg tcggtcgcaa gctgacacat
       61 tactgcatct gtaccgacca gttgctcgac cacggccaga acatcgtcgt cctcgtagat
      121 gctggaatcg gcgaacggat cagtgaaagg aagtgtcacg tagtatcgtg atgggccgcg
      181 gttttgcagg tgcccctcac gcgcaatgtg tctctcaagt aaaggaagaa agctttgacg
      241 ccagtgatcg agcttcttcg gtgaaaaatg ttcaggtaga acacaaaacc cgtctgtgat
      301 aaccgactgt gcgaattgtt tgatctgagt gcaatcgtat cgagcaggca taactcatta
      361 agaataaaac ctctcaattc aagttgccac cagtctcctg atccttttgc gtatgtttgt
      421 gcgcgttatt tgatgagcga gcttcggttc gccgagcgag tcatttgaca gggagaaact
      481 tatgcagaag agcctacttg gttttctatt ggtgttcgga atcatcgtgt cgcaaggggt
      541 cacggcaagt gcgcagcagt cggttattgg gtactggaaa acgggcggtg tgggaacgat
      601 caatgaggtc aacaccgtca ccggacagac aaagaaccgc cgcgggcaaa tgttctccta
      661 cacgtttgcc gctgacggca cctattcgtt cgtcggctac atggaatcga cgatgttcgg
      721 ctgcacgacg agcctcttca acgagatcaa cggccgctac ctggtcgacg gtacgaccat
      781 ctttctgaac cccgcgcgcg atttctggaa aaacacgtac tcgtgcttcc cgaattcaaa
      841 caagtcgcag acaaaggtcc cgacgaaaaa atcgctggag ttcagtttca agaaggatga
      901 gtacggcaag gatttcatct gcctgaacga cggaggcgcc gagacctgct accggcgcga
      961 acagcaataa cagagaagac cgaaagcagt ttctaattca gatacagatc gcgccacttg
     1021 ccggtggcgc gatttttttg tgcccggagt ttatactacg ttatcgactg atcttgtcag
     1081 ctccgcctcc gccgccacgc agctttgatc agacggtggc cagacgtgat caggcgctcc
     1141 tccagggcaa ggcgcgttgt gctccataag atgactttgc atcattcacc gagatgagtc
     1201 cattgaaatc gatccttctg cttgccgata gtgagcttct tttctatcgc gacaagggac
     1261 aactactttt ggaccgagta gtcaaagaga aggatctgga tcaactgaaa gccgcgtaca
     1321 taggcgcgtc gaacggtgac cacccggatt tctacgcgat attcgtagct gcgatggaag
     1381 gcgttggtgt gtccaactgc cgaatgattc cttccagtct cactgaagag gacctggcgt
     1441 ttctcaacga cgctgaaatt atcttacttg cgggcggcga tgttgaggca gggtggcgag
     1501 tctttctggc caacggatta aaccagcaca ttgtcagaag atactctgaa ggagtgtctt
     1561 tgatcggaat ttctgccggc gctgttcaac ttggcttgtg tggtctcgcc gccgatggat
     1621 cgctcgtcga aacctttgcc ctaatacctt ttgtaattgg cgctcacgag gaatcggata
     1681 actggaggac cactagagaa ctgctgcgat tgtcaggaag taaatctgct atcggcttgc
     1741 cgaaaggcgg cggcgctatc tatcaccccg atcacaccct cgaacctttg cgttacccat
     1801 ttgtaaaatt gggtgtctga aagtttcatt cgatcagaca cccttcaagc cgcggtcgta
     1861 atcttagaag tcgatatcgc cgacgatcgt gatttcgaac gctcccgtga gcaggttaac
     1921 aacgactatg cccgtgcccg tgccgtgcgc gccggcaaat cggcccgtgc cgccgacgaa
     1981 gcgaacggtg aatttgtcag tagccgtagg actgcccggg ctcggtacta atgctccgtt
     2041 aagctcaagc tgaacctgat cgccgttggc gctagtcatt gtccctgttc cgtgggtcag
     2101 tagacgtccg gggttagcgg ggtcggggct gaaagtgatc gtccccacgg tggtggtcaa
     2161 accgaggtga gtcgccgtac cggaactgct gacgttggcg ctgactggat tgcccgcttc
     2221 atctgcgata aaggttgcga ctccgtttgc gttgaaggca aaggggcgct cgatagccat
     2281 tacggaaata gtgccgagca gaacgaaagc ggttagcgtg agaacggtta cattgagaat
     2341 gcgtttcatg agaatctccc ttgaggttga tgacaaaaat taacttcctt cgggtcttac
     2401 acagagtcag tcaggttcct ctatgctccc ttgtgagcag gcggtaacaa ccggctctgc
     2461 tcgcgtccat gtccgggtga ctcattactg tgattgtcat ccggcaatag aatacgcgaa
     2521 acttttccac gtttagggtc atcactcatt gcgtggcgaa agcggaaacg agaaaggctt
     2581 tggacgcttc gattgaggtc tcgctaaacg tcgagatcta gccggctggt tttgtatcgg
     2641 agttgatgat catgatcttc tgccaaatct tacgcgagag gcccgtcgtc aagtcttcaa
     2701 cctcattgac tgccgcaagc gctaccgggt cgtcgaactt ctgcacgtac aacgcggcga
     2761 ttttcccaat cagagacagc atttcagtac agtaatccag ataccgcccc aactcggccg
     2821 ggctgaggtt ccgcttgggc gaagaaggcg tctctatcct ttgggccaac agttgctcgg
     2881 gatctttcgt caactgatgc atgtctatca cgtgtgctaa cgctcgcagt tcgtgaatcg
     2941 ctttgagtgc gcggcggcgc ttgatgcgcg tctcagcagt gacgagaaac aaaatcgcgg
     3001 cgctcaggag cagaaaaaca ttgaggcccg cttccgaagc ctgcacgagc acgaccaggt
     3061 cgaaaccgtt gcgcggcaag gatgcattgg ccaacacaag aacgaggacg acgataagca
     3121 ccgcgaccag cacgccggta ataattcgca gtgtcttttg cggcttcgcg atccacgctg
     3181 agcgccgctg cgattcttcc gcaacggtca acaactcctg acaaactttg tcgagaccgg
     3241 aaccgggaaa ccgctcgacg atccttctgc tgagcgtctc gatcgtggca agaattttct
     3301 ttgagtctaa gctacggtaa gtcatttggc tccagtggcg ttcgacgtcc tgaagagcga
     3361 agggtttgaa ggcacgcgcg attgtgtgtc acatttacgc cgacgatcaa gtattaacct
     3421 taaaccaatg agctttgacc tgtatctccg tggggataat ttggcgctcg ccaacgtact
     3481 cgagcactta gataactatc ccgagttcga acgacaagag ctgcccgact ccgcttatgc
     3541 gttagtgaat ccttccaccg gcgtctattg ctatttcaga ctcgacgacg atgacacagc
     3601 aagctctcga gggaagtcac tgtgcttcag cttgaactac aatcgtcaga cattttttgc
     3661 gcttgaaact ctgccgctcg tggaaagttt gtgtaagcgc ttccaactgg tggtcgagga
     3721 tcctcaggaa gaagtcgtcg gaccagcctc gctcaacgaa ctaatcaaat cgtggcgagt
     3781 tcataacgaa cgtgcagtga agtctatcga ggcacaggga atggcgctca actacatgca
     3841 cgagagcaaa gcaaatgagt ggtgggaata tgctcgcgtc agagaaaaac tttccaccga
     3901 cctcggcgac agtgtctttg tcccggaggt gtttatcatt aaacgcgctt ctgaggaacc
     3961 tttccggatg atcgtctggc ccgaaggcaa tcggcagcca atcctacagg ttgctggatc
     4021 ccgttaggca cccggaagtg atctcgctga ctcgcgagct ggagttgctt cctgcttctg
     4081 aacatgaaca agtcgggcct gacggttttc atgatgtggt cttgaagtaa atacctgtac
     4141 cgatttggct tcgtgcaagt tgctgaggtt gttgtgattc gggacagacc gtcgagggcg
     4201 cggaggtttt cacagcggcc gccaagaggc acaaacagtg caaaggtcga gagctatgca
     4261 agccgctgct cctgctgacc taacatcgcg agcctcacac gacaacctgc tcgtcgtctt
     4321 cggcgggctt ttgctcgtga tgcttttggc tgcgctcgac tccacgatcg tagccaccgc
     4381 gttgccgacg atcgtcggag agtttggcgg gctggctcac atctcgtggg tggtcaccgc
     4441 gtacctgctc gcgcaaacca tcgtcacgtc gatttacggc aagctcggcg atctctacgg
     4501 acgcaaacgc gtgcttcagt tcgccatcgt gatcttcctg attggttccg tgctttgcgg
     4561 tttgagccag tcgatgactc acttgatcat ctttcgcgcc gttcagggtt tcggcggcgg
     4621 cggactcatc gtcacgacac aggccgtcgt cgccgacatc gtgcccgcgc gcgcacgcgg
     4681 acgttaccag ggcgttttcg gcgcggcttt tggattcgct tcggttgctg gtccgttagt
     4741 cggcggctac ttcactacgc attggtcgtg gcgctggatt ttctacatca acttgcccgt
     4801 cggcatcatc gcgcttgtgg tgctcgccg
//
LOCUS       DASWTX010000509         2747 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_377714, whole genome shotgun sequence.
ACCESSION   DASWTX010000509 DASWTX010000000
VERSION     DASWTX010000509.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2747
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_377714"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1590
                     /locus_tag="VGD38_07825"
     CDS             <1..1590
                     /locus_tag="VGD38_07825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727959.1"
                     /translation="SREQNEKLRRELAGELDAIVMMALRKEPQRRYASAEQLSEDIRR
                     HFEGRPVRARPDTMGYRTGKFIKRHRLGVAAAALVLSTLIGGIMATAWQARIARAERA
                     RAERRFNDVRKLANSFIFDIHDNIVDLPGSTRAREALVKSALEYLNSLAQEASDDPAL
                     QRELAVAYQRVGDVQGNPTNANLGDTAGALASYRKALSIADVLLAGDPNDVEAQRSRA
                     LTYQKLSDLQAWTGDLQNAIESARKSLASFKALAEAESTNLKSRQSLAISHIKLGDIL
                     GNPFFANAGDEAGALEQYRLSLALWQALHVSDSTDATTRRYLGLIHERIGTMLQQQEQ
                     LDDALVSYQQSLVIRESFATDRPTNTDARRDLAVGYEKLAEILMARGDLTRALDYSRK
                     SFDIFAALSKADPNNVNASRSLSISYERLGDVLLRSGDAAGALENYQKSLSIREALST
                     TGPTNVQLLTDLAKSYSKLGDAHTALGENGSGEHLKQSQSWYRRSANLWADLRNRGVL
                     SGNDLKEADRIAKISSGATPR"
     gene            complement(1604..2614)
                     /locus_tag="VGD38_07830"
     CDS             complement(1604..2614)
                     /locus_tag="VGD38_07830"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEY0727960.1"
                     /translation="MQRRIRVIELSLIAIALVGLLLSVGYTTREGATTPRVAPLKFNP
                     TVARVERGRYLVEGPAHCFQCHSELDWERPGAQPKQGKKGSGTIFIEDGMEWLVAPNI
                     TPDRETGAGNWTDEQFARAIREGIGHDGRRLFPMMPYMNFRQMSDEDLASVVVYLRSI
                     DPVRNAVPKTMLPEIMKASLPPHQPLTEAVKGPDMSNPVERGKYLVTLGNCMSCHTPM
                     NKQGQPLMQFAFAGGLRFKGPWGEVTSANITPDASGISYYDEALFVNTLRTGQVGARK
                     LNSIMPWGYFRNMTDEDLKAIFAYLRTLPPVQHRIDNTEEPTVCEVCGGRHGFGDRNH
                     SE"
BASE COUNT          566 a          818 c          807 g          556 t
ORIGIN      
        1 agccgggagc aaaacgagaa actgcgccgc gagttggcgg gcgagctgga tgcgatcgtg
       61 atgatggcgt tgcgcaagga gccgcaacgc cgttacgcat ccgcggaaca gttgtctgaa
      121 gacattcgac gtcacttcga gggaaggccg gtgcgcgcac gtcccgacac gatgggctat
      181 cgcactggca agttcatcaa gcgccaccgg ctgggtgttg cagccgcggc actggtgctc
      241 tccacgttga tcggcggcat catggcgact gcctggcagg ctcgcatcgc gcgcgctgaa
      301 agagctcgcg ccgaacggcg tttcaacgac gttcgcaagc tggccaactc tttcattttc
      361 gacattcacg acaacatcgt ggatctaccg ggttcaacac gcgcacgcga agcactcgtg
      421 aagagcgcgc tggaatatct gaacagcctc gcgcaggagg cgagtgacga ccctgcactg
      481 caacgtgaac tggccgtcgc atatcagcgc gtcggcgatg tgcaaggcaa tccgacgaac
      541 gcgaacctcg gcgatacggc cggcgctttg gccagttatc gaaaagcatt gtcgattgcc
      601 gatgtgttgc tggcgggcga tcccaacgat gtcgaagcgc aacgctcacg cgccctcacc
      661 tatcagaagc tcagcgatct acaagcgtgg accggcgatc tgcaaaatgc gatcgagagt
      721 gcgcgcaagt cgctggcttc gttcaaggca ctcgccgaag ctgaaagcac gaatctgaaa
      781 tcgcggcagt cgctggccat cagtcatatc aagctcggcg acatactcgg caatccgttc
      841 ttcgccaacg ccggcgacga ggcgggcgcg ctcgagcagt atcgattgtc gttggcgctg
      901 tggcaggcgt tacacgtctc cgactccacc gacgccacga cccgccgcta tctcggtctc
      961 attcacgaac gcatcggcac catgttgcaa caacaggaac agctcgacga cgccctcgtc
     1021 agttatcaac agtcgctggt gattcgggag tcgttcgcca ccgatcgtcc caccaacacg
     1081 gacgcgcgcc gcgatctcgc cgtcgggtat gaaaagctgg ccgagatcct catggcacgc
     1141 ggagacctta cgcgtgcttt ggactactca cgcaagtcgt tcgacatttt tgcagcgtta
     1201 tcaaaagccg atccgaacaa cgtgaacgcg agccggtcgc tttcgatcag ttacgagcgc
     1261 ctgggcgatg tgcttttgcg ttcgggcgat gcggccggtg ctttggagaa ttaccagaag
     1321 tcactcagca ttcgcgaagc gttgtcgaca actggtccaa caaacgtgca gcttctgacg
     1381 gatctagcga agtcgtattc gaagttaggc gacgctcaca cggcgctggg ggagaatggt
     1441 tccggtgaac acctgaagca gtcgcagtcg tggtatcgac ggagtgcgaa tctctgggcg
     1501 gatctgcgaa accgcggcgt gctcagcggc aacgatctca aggaagccga tcgaattgcc
     1561 aaaatctcga gcggagccac gccgcggtaa acgggccggc gaactattcc gagtggttcc
     1621 tgtcgccgaa cccgtgtctc cccccgcaga cttcacaaac ggtcggttct tccgtgttgt
     1681 caattcgatg ctggaccggc ggcagtgttc gcaagtaggc aaagatcgct ttcagatctt
     1741 cgtcagtcat gttgcggaaa tagccccacg gcatgatcga gttgagtttg cgcgcgccga
     1801 cctggcccgt gcgcaacgta ttcacaaaca acgcttcgtc gtaataggaa atacccgaag
     1861 catccggcgt gatgttggcg ctcgtgactt caccccacgg tcctttgaaa cgcaggccgc
     1921 cggcaaacgc gaattgcatc aacggctggc cttgtttatt catcggcgtg tgacacgaca
     1981 tgcagtttcc caacgtcacg agatactttc cgcgctccac cgggttcgac atgtcgggac
     2041 ctttaaccgc ttccgtgagc ggctggtgtg gcggcaggct ggccttcatg atttcgggca
     2101 acatcgtctt tggcactgcg ttgcgcaccg gatcgatcga gcgcagatag accacgactg
     2161 aggcgaggtc ctcgtcagac atctggcgga agttcatgta aggcatcatt ggaaacagcc
     2221 gccggccgtc gtgaccgatg ccttcgcgta tcgcgcgcgc aaactgttcg tcggtccagt
     2281 tacccgcgcc ggtctcacga tccggtgtga tgttcggggc gaccagccac tccattccgt
     2341 cttcgataaa gatcgttccg gaacctttct tcccttgttt cggttgcgcg ccgggtctct
     2401 cccaatcgag ttctgaatgg cattggaaac agtgagcggg tccttcgacg aggtaacgcc
     2461 cgcgttccac gcgcgccacg gtcggattga atttcaacgg agccacgcgc ggtgtcgtag
     2521 cgccttctcg cgtggtgtag cccactgaaa gcagcagtcc taccagcgca atggcgatca
     2581 gcgacaattc gatgacccgt atcctgcgtt gcatatctcc ggtcctccta cgcatccgag
     2641 ttcgggagga gcagcctcgc gactgcccct caactcagat agcgacaaac cggagcggtt
     2701 tgtgtcacgt cttttttagc gaaaactatc ggtggcgcgg atgaggg
//
LOCUS       DASWTX010000510         2504 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_179546, whole genome shotgun sequence.
ACCESSION   DASWTX010000510 DASWTX010000000
VERSION     DASWTX010000510.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2504
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179546"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..758)
                     /locus_tag="VGD38_07835"
     CDS             complement(<1..758)
                     /locus_tag="VGD38_07835"
                     /inference="COORDINATES: protein motif:HMM:NF017206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY0727961.1"
                     /translation="MSNEKSKMKVVVIGGTGLIGSKVMANLREHGYEAVSASPDSGVN
                     TLTGEGLAEVLEGASVVVDVSNSPSFDDAAVMEFFETSTRNLLAYEAAAGVGHHVALS
                     VVGCDRLPDSGYLSAKVAQEKLIKESSIPYSIVRATQFFEFAKRIADSATEGNTVRLP
                     AVGFQPMAADDVAKVVARTAVGAPLNGTVEIGGPEQFRFNEFISRGLNARNDPREVVA
                     DPHARYFGTELSERSLVPEDGALLGEMRFEDWLVG"
     gene            complement(786..1175)
                     /locus_tag="VGD38_07840"
     CDS             complement(786..1175)
                     /locus_tag="VGD38_07840"
                     /inference="COORDINATES: protein motif:HMM:NF012417.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY0727962.1"
                     /translation="MKNTTLMLALLFLMTGTAVAQQATVKSLMSKDLTELPGKEVLMI
                     TVEYAPGGTDPVHRHNARAFIYVLEGSIVMQVKGGKEVTLNPGETFYEDPNDIHVVGR
                     NASTTKPAKFVVFFIKDKDAPVLVPVQ"
     gene            complement(1187..2032)
                     /locus_tag="VGD38_07845"
     CDS             complement(1187..2032)
                     /locus_tag="VGD38_07845"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY0727963.1"
                     /translation="MSTITTKDGTQIYYKDWGAGQPVVFNHGWPLTADAFEDQMFFLA
                     SNGYRCIGLDRRGHGRSDQTWHGNDMDTYADDLAALVEKLDLKNAILVGHSTGGGVVA
                     HYIGRHGTARVAKAVLISAVPPQLVQSPDNPDGLPMELLDGLRKSIQADRYQFWKDFC
                     NLFYSLNRPGAKISEGVADSFFAQCSMAGFPASYLGIRAFSETDFNEDLKKFDVPTLI
                     MHGDDDQVVPVAASALRSAKIVKNAVLKVYPGFPHGMCQTQKDVINTDLLQFIQQEQS
                     SSASA"
     gene            complement(2177..>2504)
                     /locus_tag="VGD38_07850"
     CDS             complement(2177..>2504)
                     /locus_tag="VGD38_07850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727964.1"
                     /translation="LRIAATGMFALNLMHRFNFSSNALHWFVIALIVVISLGLLLGFL
                     TPILTVIACVAGVANLLLTDQPTNVVYILGILLPAALFFLGPGAFSVDARLYGLRVTV
                     VPPRKG"
BASE COUNT          576 a          729 c          664 g          535 t
ORIGIN      
        1 ccaacaagcc agtcttcgaa acgcatctcg ccgagcaacg cgccatcctc gggtacgagt
       61 gaacgctcgc tgagctcagt gccgaagtag cgcgcgtgcg gatcggcaac aacctcacga
      121 ggatcgttgc gggcgttgag accacggctg atgaattcgt tgaaacgaaa ctgttccggc
      181 cccccaatct cgacagttcc attcaacggc gccccaacag ccgttcgcgc caccaccttc
      241 gcgacgtcgt cagccgccat cggctgaaaa ccaacagccg gcaagcgaac cgtgttgcct
      301 tcagtcgcgg agtcggcgat gcgtttcgca aattcgaaaa actgcgtggc gcgcacgatc
      361 gaatacggga tcgacgattc cttgatcagc ttctcctgcg cgaccttcgc actgagataa
      421 ccgctgtcgg gcagacggtc acaaccgaca acggacaagg ccacatgatg gcccacaccg
      481 gcggccgctt cgtacgcgag caggttgcga gtcgacgtct cgaagaactc catcaccgcc
      541 gcatcgtcga acgacggcga gttcgacaca tcaaccacca ccgacgcacc ttcgagaact
      601 tcagcgagcc cttcgcccgt caacgtattc acgccggaat cgggcgacgc agacacggct
      661 tcgtaaccgt gctcacggag attcgccatg accttcgatc cgataaggcc agtgccgcca
      721 ataaccacaa ccttcatttt tgatttctcg ttcgacatag ttaccctcct caagtctgaa
      781 tttgtttact gcactggcac cagcaccgga gcatccttgt ccttgatgaa gaacaccacg
      841 aacttcgccg gcttcgtcgt gcttgcgttc cgcccaacga catgaatgtc gttagggtct
      901 tcataaaacg tctcgccagg attcagcgtc acttcctttc cgcctttcac ctgcatcacg
      961 atcgagcctt ccagcacgta aatgaacgca cgtgcattgt gccggtgaac tggatccgtg
     1021 ccgcccggcg cgtattccac ggtgatcatc aggacttctt taccgggaag ttccgtcaga
     1081 tcttttgaca tgagcgattt gaccgtcgcc tgttgggcca cggccgtgcc cgtcatgaga
     1141 aacagcagag ccaacatcaa tgtagtgttc ttcatgatcg tctcccttac gccgacgccg
     1201 acgagctttg ctcctgctgg atgaactgaa gcaagtccgt gttgatgacg tctttctgtg
     1261 tttgacacat gccgtgaggg aaaccaggat agactttcag gaccgcgttc ttgacgatct
     1321 tcgccgagcg caacgccgaa gcggcgaccg gcacgacctg atcgtcgtcg ccgtgcatga
     1381 tgagcgtcgg cacgtcaaac tttttaagat cttcgttgaa atccgtttcg gagaaggccc
     1441 tgatgccgag atagctcgcg ggaaaaccgg ccatgctgca ttgagcaaag aatgagtcgg
     1501 ccacaccttc ggagatcttc gcacccgggc gattcaagct gtagaacaga ttgcaaaagt
     1561 ctttccagaa ctggtaacgg tccgcttgta tgctcttacg cagaccgtca agaagttcca
     1621 tcggtaagcc gtcgggatta tccggtgatt gcaccagttg cggcggaaca gcgctgatca
     1681 atacggcttt cgcaacgcgg gccgtgccat gccggccgat gtagtgagcg acgacgccgc
     1741 caccggtaga gtgcccgacc agaattgcat tcttcaggtc cagcttctcg acgagcgcgg
     1801 cgagatcgtc tgcatacgtg tccatatcgt tgccgtgcca cgtttgatcc gaacgcccgt
     1861 ggcctctgcg gtcgagacca atacatcgat aaccgttcga ggccagaaaa aacatctggt
     1921 cttcaaacgc gtcggccgtt aaaggccatc cgtgattgaa gacaacaggc tggccggcgc
     1981 cccagtcttt gtagtaaatc tgcgtgccgt cttttgtcgt gatcgtactc atttcatcct
     2041 ctcttcctgt gttaaggacc ttcgtcaatt tatgtttgca gaatccatcc gagtgtgagg
     2101 attttgcgct cgacggttta ttcgcgaaac cctagatggt gcgagttgaa gatcactcga
     2161 tagagtaaga gctggattac cctttgcgcg gaggcacgac agtgacgcgc agtccgtaca
     2221 accttgcgtc gactgaaaat gcgcctggtc caaggaagaa gagcgcggcc ggtaacaaaa
     2281 taccgagaat gtaaacaacg ttagtgggtt ggtcagtcaa caacagattt gctacgccgg
     2341 cgacgcacgc gatcacggtg agaatgggtg tcaggaaacc gagaagcaga ccgagcgaga
     2401 tcacgacgat caatgcaatc acgaaccagt gcagggcatt ggaagagaag ttgaaccggt
     2461 gcatgaggtt caaggcaaac atcccggttg ccgctattct taag
//
LOCUS       DASWTX010000511         4128 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_72907, whole genome shotgun sequence.
ACCESSION   DASWTX010000511 DASWTX010000000
VERSION     DASWTX010000511.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4128
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72907"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1645)
                     /locus_tag="VGD38_07855"
     CDS             complement(<1..1645)
                     /locus_tag="VGD38_07855"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0727965.1"
                     /translation="MSYFKNASLPLMLLFAFVVCALPAMAQTADDTSIARSVTTSFFE
                     AYQRKDADALIALWSTKAPDLAAFTKDVRQRVSIASGFEMKGFEIQRVTVSDTTAIAR
                     VNVAVQAAEIKGQPANEVGKLNRTLRLVKEDGRWKVSQFEPSERELATNLISAKAETD
                     RKALLEADPELITFELVQALQKQADALTQRREPSQAAIAWQLMRSIAERIGDKISVAH
                     AINQLGANYYARGEFQQALELFELQLGLEAAKRDKAITSRSLNNIGMIKRAFGDMAGA
                     LEYLERSRKLSEEVGERRVHANSLNNLGIVARDQGDYARALDYFEKSLAINEAIGEKG
                     PISLSLNNIGTIHGTQGNQVQALEYFQRSLKLGEAANDKNMIAFAVNNIGLTYHRYRD
                     YPRALEYYRQSLALREQLNDKRGAALTLNNIGLLHREQGDHKKALEYYQQSLAIREKL
                     DDQSGTAFVLNHIGYLHYLQGNYEQALQITKRTIDISTRLSNPELLWRSYELAGRAHT
                     SLKQFDEAERVLTTSINTVEQMRYRVGGGELARQRFFEDK"
     gene            2527..>4128
                     /locus_tag="VGD38_07860"
     CDS             2527..>4128
                     /locus_tag="VGD38_07860"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0727966.1"
                     /translation="MRKVLLPFMFVFLAASTANSQSNYATLSGTVFDPQQNVLAGGSV
                     MVTSETTGASRSAVTNDSGSFQITGLLPGAYKVTVQANGFATLTQKVTLEVGQSMTLD
                     LVLRVATVNTVVEVPADANSVLRTTDASVGEVVEPTAVQNLPLNGRMLIDLVLTVPGA
                     HEAHGAQAGDMSPLYWRPGQRSAVSIGGNRPNANYFLLDGATNTDPTFNTLNVSPAPD
                     AVQEFKVQTGSYTAEHGGAGGGQINIVTRTGANEFHGTVYEFLRNDVFDARTFNEMEE
                     SNHLVRNNFGGSFGGPIVRNKSFFFVNYEGLRHTRSHTMIATVPTLDEINGNFEMSGV
                     NIYNPFSSRPNPNFDPTRPVSPSNAQIIRDQFPNNVIPENLIDPKAKLFMSKYLPRPN
                     LEMGMMGCGMTMMGAPTVVGAGMDCNNYLDVRNAHHTTDQATVRFDHTLKRGDSFFAR
                     YSFSSERGFTPQNLPGFGAIHDNLGQNGTVGWTRVISPNIVNLASVTISRLAMHRTSE
                     NSFTNDIVSELGITGIGFGGEGAFGA"
BASE COUNT          877 a         1155 c         1125 g          971 t
ORIGIN      
        1 ctttatcttc aaaaaatcgc tggcgcgcca gctcgccgcc gccaacgcga tagcgcatct
       61 gttcgacggt gttgatggaa gtggtcagga ctctctcggc ctcgtcaaat tgcttcaatg
      121 aagtatgtgc tcgcccggca agttcgtagc ttcgccagag aagttcgggg tttgagagac
      181 gcgtcgaaat atcgatggtt cttttcgtga tctgcagcgc ctgctcatag ttgccctgca
      241 ggtaatgaag gtacccgatg tggttcagga cgaacgccgt gcctgactgg tcgtccaact
      301 tctcacggat ggcaagactt tgctggtagt attcgagggc ctttttgtgg tcgccctgtt
      361 cgcggtgaag aaggccgatg ttgttcaggg tgagtgcggc cccgcgctta tcgtttaact
      421 gctcgcgcaa tgccaggctt tgtcgataat actcgagcgc ccgcggatag tctcgatacc
      481 tgtggtaagt aagaccgata ttgttcacgg cgaatgcaat catgttctta tcgttggcag
      541 cttcaccgag ctttagagag cgttggaaat actccagcgc ctgcacctga tttccctgcg
      601 tgccgtgaat cgtcccgatg ttgttgagcg aaaggctgat tggacctttc tcgccgatgg
      661 cctcattgat cgccagactt ttttcgaagt aatccagggc gcgcgcgtag tctccctggt
      721 ctcttgcgac aatgccaaga ttgttaagtg agttggcgtg gacccttcgt tcacctactt
      781 cctctgacag ctttcggctt cgctcgaggt attccagtgc gcccgccatg tctccgaagg
      841 cacgcttgat catgccgatg ttattaaggg agcgggaggt tatggcctta tcgcgcttgg
      901 cggcttccaa ccccaactgc agctcgaaca actccagggc ctgctgaaat tctccgcgtg
      961 cgtaataatt agctccgagc tggttgatcg catgtgcaac gctgattttg tcgccaatcc
     1021 gttctgcgat tgagcgcatg agttgccacg cgatcgcggc ctgcgacggt tcgcgacgtt
     1081 gtgtgagggc gtcggcttgt ttctgcaatg cctggaccaa ctcaaaagtg attaactccg
     1141 ggtcggcttc cagtaatgct tttcgatcgg tctccgcttt tgcggaaata agattggttg
     1201 cgagttctcg ctcgcttggt tcgaactgcg acactttcca gcggccgtct tctttcacga
     1261 gccgcagcgt tcggttgagt tttccgacct cgttagccgg ttgtcctttt atctccgccg
     1321 cctgcaccgc gacattcact ctggcgatag ccgtcgtgtc tgagacggtt acccgctgaa
     1381 tctcaaaacc tttcatttca aagccgcttg cgatcgagac tctctgccgc acgtcttttg
     1441 tgaacgcggc caggtccggc gctttcgtgc tccaaagagc aattagcgca tccgcatctt
     1501 tacgctgata agcctcgaag aagctggttg tcacactacg tgcgatgctt gtgtcgtccg
     1561 ctgtctgagc catggccggg agtgcgcaga ccacgaacgc aaacagcaac attaagggga
     1621 gcgacgcatt tttgaaatac gacataacca ccactctttc atttttggat cgatgtggga
     1681 ccgcgaaggg gagatggcag caagcaagcg cgcctatttt agtaaatcga gtttggatag
     1741 caagagattt tatgagttga ggttcgtgca caaaattctt atacgcagaa aaaatttttt
     1801 ctcaccgtgg taatacctcc ggcgcttttc atcttcactg gataagacag cgaaaacgca
     1861 tcccgactcg ccggacacca gctttatctg acacttgtcg gcgattgaat gcgcccatca
     1921 gcagtaatgc cgccgctcac gagtctactc accccacagc gagagggatt ccaacgaggt
     1981 atgcaaaggg gggcgcgtca gaacccgccg gcgacgcgag caacctcgtt taatgaatcc
     2041 ctccgcacct cacggagtca agagctggag aggttatggc tcgtagagtt ttcctgtctg
     2101 gtttctgtgg tgcagcccct cgagcggttg cttatcgagg ggaccggttg gaaacaggat
     2161 cgtcacggcc tcttccggag gcgtgatggt ctcattgact agtcgtgagc caactagttg
     2221 agagccgtca aaccggcaaa acttaagatc tcctccggcg aacaactgcc ggcattttgg
     2281 acactgtttc atgaccgtaa cctacgtaca ttgcgtctat tcagtaacgc gaagaaaagt
     2341 gcgccatggg tcgccgcagg tgctgaaaat tttgctgatt gttcggacac tccaacttta
     2401 gttgggtgac actcacggcg atctctcact aaaactcacc gcttcggttg gcagtctcgg
     2461 ccacccgact ccctttagaa ctgcgttctg ttgccaaggc taacctagtc acgtggaggt
     2521 ctgagtatgc gcaaggtact tctgccgttc atgtttgttt tcctcgctgc aagcacagct
     2581 aattctcaaa gcaactatgc aactctgagc ggcaccgtct tcgatccgca acagaatgtt
     2641 ctcgcgggcg gttcggtaat ggtgacctcg gaaactacag gcgcctcgcg ctcggccgtc
     2701 accaacgact ccggcagctt ccagatcacg ggtctattgc ccggcgctta caaagtcaca
     2761 gtgcaggcaa acggatttgc cacgctgact cagaaggtca ccctcgaagt gggccagtcg
     2821 atgacgcttg atctggttct gagagtcgcg acggtgaata cggttgtcga ggttcccgcc
     2881 gatgcgaaca gcgtgctgcg cacgaccgat gcttccgttg gcgaagtggt cgaaccgacc
     2941 gcggtccaga acttaccgct caacggccgc atgttgatcg atctggttct tacagttccc
     3001 ggagcgcacg aagctcacgg cgctcaggca ggcgatatga gtccgctcta ctggcgtcct
     3061 ggccagcgct ccgcggtgag catcggcggc aatcgtccga acgcaaacta cttcctgctt
     3121 gacggcgcca cgaacacgga cccgacgttc aacacgctca acgtcagccc tgcgccggac
     3181 gccgtgcagg agttcaaagt gcaaaccgga agttacacgg ccgaacatgg cggcgccggt
     3241 ggcgggcaga tcaacatcgt cacgcgcact ggtgcgaacg agtttcatgg cacggtttac
     3301 gagttcttaa gaaacgacgt gttcgatgcg cgtaccttca atgagatgga agagtcgaat
     3361 cacctcgtgc ggaataactt cggcgggtcg ttcggtggtc caatcgttcg caacaagagc
     3421 ttcttcttcg tcaactacga agggctgcga cataccaggt cgcacacgat gatcgccacg
     3481 gtgccgaccc tggacgagat caacggaaac ttcgagatga gcggcgtgaa catctacaat
     3541 ccttttagtt cgcgtccgaa tccgaacttc gatccaacga ggccggttag tccgagcaat
     3601 gcgcagatca ttcgcgatca gtttcccaat aacgtgattc cggagaacct gatcgatccg
     3661 aaagcaaaac tcttcatgtc gaaatacctg ccgcggccca acctcgaaat gggaatgatg
     3721 ggttgtggca tgacgatgat gggcgcaccc acggtcgtcg gcgcggggat ggattgcaac
     3781 aactatctcg acgtgcgcaa cgcacaccac accacggacc aggcgacggt tcgtttcgat
     3841 cacacactca aacgcggcga cagtttcttc gcccgctatt cgttcagcag tgaacgcggg
     3901 ttcacgccgc aaaacctgcc aggctttggc gccattcacg acaacctcgg acaaaacggg
     3961 accgtcggct ggacgcgcgt gatcagtcca aacatcgtga acctcgcgtc ggtcacgatt
     4021 tcgcgcctcg cgatgcaccg gacttcagaa aacagtttta ccaacgacat cgtgtccgaa
     4081 ctcggaatca ccggtattgg ttttggcggc gagggcgcat ttggcgcg
//
LOCUS       DASWTX010000512         2289 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_222776, whole genome shotgun sequence.
ACCESSION   DASWTX010000512 DASWTX010000000
VERSION     DASWTX010000512.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2289)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2289)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2289
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222776"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            52..>2289
                     /locus_tag="VGD38_07865"
     CDS             52..>2289
                     /locus_tag="VGD38_07865"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR family protein"
                     /protein_id="HEY0727967.1"
                     /translation="MKRNSEEILDKVTAEIRNEKVDSAAMSAAADRVWARVSAAAGEA
                     EFVMPAVDRIEGCADFQSLIPAYLAGKLSEARSLLLVDHTHECIPCRRAMNEARRSRT
                     TFVKAPVKTRRYSLQPVVMRWGIAAAIVIGFGLLAIPFMQRYWPYGEFEATVQAAEGQ
                     VFQVADAQTAAVATGAKLQKGERVRTAKDAHAVVRLGDGTLIEMKERSELYLTKNGQG
                     TTIHLDRGNIVVEAAKQKDGKLFVESGDSLVSVTGTVFSVNNGTKGSRVSVIEGEVNL
                     NHAGSDRVLRPGDQVTTSPAISTIPIKDEVAWSKKANHYAAVLSGLATLKSELKGVQQ
                     PGVRNSTHLLDLMPENTVVYAALPNLTDTITESHRIIQERMSQNAALREWWEKEQSGR
                     AQNMDKVVETVRQFGPYLGDEIAVSVSMDEQGRPGEPLVLAELKNSEGFRQVLEQQLA
                     KLSGGNDKPEIVFVENPLTAVDTVGAKKEKLNVWIQNNLMAASPKLAQLQQLAGVIAG
                     GGSSSFTATPFRSRIAQVYQSGAGIVVAANLEKVVAQTKAERSKGPDADKQENALNKL
                     GILSVKYFVLDQKDANGKTHTQASLSFNDMQRGIPSWLAAPGPMGSLEYISPDANLVA
                     GFVVKNPVSLVDDLLGVLDTVSPELRKTLEKQQADRGLDLRNDIAAPLGGEFAFAIDG
                     PILPTPSWKLVFEVNDPAHLQQTLERAVGEVNKEAARFGKTGLSWDKADVSGRTYYTL
                     KSPEFG"
BASE COUNT          536 a          615 c          714 g          424 t
ORIGIN      
        1 gcgctcgcac aaaactgaga aaagagattg ggcactatct ggagaaacac catgaaaagg
       61 aatagtgaag agattctcga caaagttact gctgagattc gcaacgaaaa agtcgattcg
      121 gcagcaatgt cagcggcggc agaccgtgtt tgggcgcgtg tctctgctgc ggcaggtgag
      181 gctgagtttg tgatgccggc cgtcgatcgg attgaaggct gtgctgattt tcagtcgctg
      241 attccggctt acctggcagg aaaactttcg gaagcgcggt cgctgttact cgtggaccac
      301 acgcacgaat gcattccctg ccgcagagca atgaacgaag cgcggcgcag ccggacaacg
      361 ttcgtgaaag ctccggtcaa aaccaggcgc tactcgcttc agcccgtcgt catgcgctgg
      421 ggcatcgccg cggcaatcgt gatcggtttc ggcctgctgg ccattccgtt catgcagcgt
      481 tactggccgt acggtgaatt cgaagcgacg gtccaagccg ctgaaggaca ggtgttccag
      541 gtagccgacg cgcagacggc ggctgtcgcc accggcgcga agttgcagaa gggcgaaaga
      601 gtgcgcacgg cgaaagacgc gcacgcagtg gttcgcctcg gcgacggcac gttgatcgaa
      661 atgaaagaac gttccgaact gtacctgacg aagaacggac agggaacgac gatccatctc
      721 gatcgcggca acatcgtcgt cgaagcagcg aagcaaaaag acggcaagtt gtttgttgaa
      781 agcggtgact cgctggtctc ggtgacggga acagtgttct cggtcaacaa cggcacgaaa
      841 ggctcgcgcg tttcggttat cgaaggcgaa gtgaacctga accacgccgg cagcgatcgt
      901 gtgctgcgtc cgggcgacca ggtgacgacc agtcccgcaa tctcgacgat tccgatcaaa
      961 gacgaagttg cgtggagcaa gaaagcgaat cattacgcag cggtgttgag tggtctcgcg
     1021 acgctgaaga gcgaactgaa aggcgttcaa cagccgggcg ttcgcaattc gacgcacctg
     1081 ctcgacctga tgccggagaa cacagtggtt tatgcggcgt tgccgaacct gaccgacacc
     1141 atcaccgaat cgcaccgcat catccaggaa cggatgagcc agaacgcggc gttgcgcgaa
     1201 tggtgggaga aagagcagtc cggcagagcg cagaacatgg acaaggtcgt ggagaccgtt
     1261 cgtcagtttg gtccatacct cggcgatgag attgcggtgt ctgtttcgat ggacgaacag
     1321 ggccgcccag gtgagccgtt ggtgctggcc gaactgaaga attccgaagg cttccgccag
     1381 gtgctcgaac agcagctcgc gaagttgtca ggcggtaacg acaaaccgga aatcgttttc
     1441 gttgagaatc cgcttacggc cgtcgacaca gtcggcgcca agaaagagaa actcaacgtt
     1501 tggattcaga ataacctgat ggctgccagt ccgaagttgg cacagcttca gcaactcgca
     1561 ggcgtgatcg cgggtggcgg cagcagcagt ttcacggcta ctccgttccg gagccgcatc
     1621 gcgcaggttt atcaatcagg cgcaggcatc gtggtcgcgg ccaacctcga aaaggtcgtg
     1681 gcgcaaacca aagccgaacg ctcgaaaggt ccggatgcgg ataaacaaga gaacgcgttg
     1741 aacaagttgg gaatcctgag tgtcaaatac ttcgtgctcg atcaaaagga cgcgaacgga
     1801 aagacgcaca cgcaggcttc gctctctttc aacgacatgc aacgtggcat tccttcgtgg
     1861 ctggctgcgc ctggcccgat gggctcgctt gaatacatct cgccggatgc gaacctcgtc
     1921 gcgggtttcg tagtcaagaa cccggtttca ctggttgacg atctgctcgg cgtgctcgac
     1981 acggtttcgc ccgagttgcg caagacgctc gagaaacaac aggcggatcg cggtctcgac
     2041 ctgcgcaacg acatcgccgc accgttgggt ggtgagtttg ccttcgcgat cgatggtcca
     2101 atcctgccga caccgtcgtg gaagctggtg tttgaggtca acgacccggc ccacttgcag
     2161 cagacgctcg aacgcgcggt tggtgaagtc aacaaggaag ccgcgagatt cggcaagacc
     2221 ggactgagct gggataaggc ggacgttagc ggccgcactt actacacgct gaagtcgcct
     2281 gaatttggc
//
LOCUS       DASWTX010000513         1562 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_201069, whole genome shotgun sequence.
ACCESSION   DASWTX010000513 DASWTX010000000
VERSION     DASWTX010000513.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1562
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201069"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            255..1202
                     /locus_tag="VGD38_07870"
     CDS             255..1202
                     /locus_tag="VGD38_07870"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY0727968.1"
                     /translation="MKKRYWIAGTATAAATVAVVAKLLARPRDADWHKYRHVVFHSEH
                     SRFVEIDGVRVHYQEAGDKNNPALVLIHGFASSTLVWSKVFLDLAQAGFRVIAVDLLG
                     YGYSGKPRDGEYTIAGQASLLMRLLERLGIKRATLVGSSYGGAVAATCALDHQQRVDK
                     LVLVGAVSNNQPLRYHLMRLFNSPLLGDVVSPLLIGSRRLLRRRMKRVYDRHEWVLDE
                     RRVDARHFPLRAVGTQRAIIRTVRCWDAERISRDAHLIRQPTLLLWGENDIEIPLADG
                     ERLHEQIPGSRLVVFLNCGHLPHEEYPEAFTKVVAGFCM"
     gene            1222..>1562
                     /locus_tag="VGD38_07875"
     CDS             1222..>1562
                     /locus_tag="VGD38_07875"
                     /inference="COORDINATES: protein motif:HMM:NF016195.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF444 family protein"
                     /protein_id="HEY0727969.1"
                     /translation="MTIQRNDWSLQRKGIIDQERHKDRVKEAIRKNLGSIVSNEAIIL
                     SDGKRTVKVPIRALDEYQFRFNYQTAKHVGQGDGKTRVGDVIGRESRSGGGQGSGQAG
                     QEGGLDYYEAEV"
BASE COUNT          336 a          398 c          489 g          339 t
ORIGIN      
        1 tcgctgactt gaaagacgtg gtaaagatta caacgtcggc gaagacgccg gatccggatc
       61 agttgcgaag gattaatgag gttgtagata gactggtcaa agagcacttc tattgtccgg
      121 tttgtgcgaa cgaactgctg acctacgttg gtacgctgtt gtcacgctag ggggcaggga
      181 ttaaacggat aacacggagc agataactca taacgcccgc gctcttcgga cgcgggcgtt
      241 atgataagcg gagaatgaag aaacgttact ggatcgccgg aacggcaacg gctgctgcca
      301 ctgtcgcagt cgttgccaaa cttctggcgc ggccgcgcga cgccgattgg cacaagtatc
      361 gccacgttgt ttttcattcg gaacattcgc gcttcgtcga gattgatggt gttcgtgttc
      421 actaccagga agccggcgac aagaacaacc cggcgctggt gctgattcac ggctttgctt
      481 cgtcaacact ggtttggagc aaagtgtttc ttgatttggc gcaggccggt tttcgcgtca
      541 tcgcggtcga tcttttgggt tacggctatt ccggcaaacc gcgagacggc gagtacacga
      601 ttgccggaca agcaagcctg ctgatgaggt tgctggaacg tttgggaatc aaacgcgcga
      661 cgctcgtcgg tagttcgtac ggtggcgcag tcgcagcgac gtgcgcgttg gaccatcagc
      721 agcgcgttga taagttggtg ttggtcggag cggtgagcaa caaccagccg ctgcgttatc
      781 acttgatgcg tttgtttaat tcgccactgc tcggcgatgt cgtttcgccg ctgttgatcg
      841 gttcgcgccg tttgctgcgt aggcggatga aacgtgttta cgaccggcac gaatgggtgc
      901 ttgatgaacg acgcgtcgac gcgcgccatt ttcctttgcg cgccgtcggc acgcagcgcg
      961 cgatcatacg cacggtgcgc tgttgggatg ccgaacggat ttccagggac gcgcatctta
     1021 ttcgacagcc gacgttgctg ctctggggtg aaaacgatat cgagattccg ctggcggacg
     1081 gcgagcgctt gcacgaacag ataccagggt cgcggttggt cgtgtttctg aattgcgggc
     1141 acttgccgca cgaggagtat ccggaggcct ttacgaaagt tgtcgcaggc ttctgcatgt
     1201 aagaagtgcc ggtgaagagt tatgacaatc caacgcaacg actggtcact gcaacgcaag
     1261 ggcatcatcg atcaggagcg ccacaaggat cgcgtcaaag aagctatccg taagaacctc
     1321 ggctcgattg tttcaaacga agccatcatc ctctccgacg ggaagcgcac cgtcaaagtt
     1381 cccatcagag cgctcgacga ataccagttt cgattcaatt accagacagc caaacacgtg
     1441 ggccagggcg acggcaagac gcgcgtcggc gacgtcatcg gccgcgagag ccggtcgggt
     1501 ggcggccagg gttcgggaca ggcgggtcag gaaggcggcc ttgattatta cgaagcagag
     1561 gt
//
LOCUS       DASWTX010000514         4463 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_93510, whole genome shotgun sequence.
ACCESSION   DASWTX010000514 DASWTX010000000
VERSION     DASWTX010000514.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4463
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93510"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..521)
                     /locus_tag="VGD38_07880"
     CDS             complement(<1..521)
                     /locus_tag="VGD38_07880"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HEY0727970.1"
                     /translation="MAANIKDYYEVLGVKRDASDDDIKKAYRKLARKFHPDLNPGDKA
                     AEEQFKQVQAAYDVLANPEDRKLYDQYGENWRAVKSGAGAPPPGWEQAQRAGGPRQGG
                     AEPGFDFSDFDFGGFRSSGGEGFDIFEEIFSRAGRGRGPRTGRGRDVEAELELSLEEA
                     HRGGRRSLQMQTA"
     gene            959..2386
                     /locus_tag="VGD38_07885"
     CDS             959..2386
                     /locus_tag="VGD38_07885"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY0727971.1"
                     /translation="MQDTPTLYAKLIHSLDGIVWVADAETFQFTFVSPQAERILGYPI
                     EHWFEPDFWRKHTHPDDRDWCSAFCMDSTERGQDHEFEYRMIAANGAIVWLHDIVSVR
                     VERGGGISLSGIMLDITNRKQAQDELRKQTEILQKIVDHLPIMITFRDAAGRLKLVNQ
                     EWERTFGWSLAEARNRKGDILPEVYPDAYHLRRARDWIAEANGEWLDFKSKTRDGDLI
                     DTTWAIVRLSDGTTVCIGQNITERKRAEEERKQLLQRLITAHEDERRHLSRELHDNIG
                     QYLSALLLGLESCARLPQLPAAALDKLSYLKETTKQLELDVHGVALELRPTTLDDLGL
                     EAALSSLTREWARRHEQRIKAVFNSTGFNNHAERLSSEVEVAIYRVVQEALTNVSRHS
                     KADIVSVILACDDRYVQVIIEDNGVGFDAENLMSDPAENRRLGLMGMRERVQLVGGDF
                     QIESGAGTTIVVSIPLSRNGSNGDG"
     gene            2379..3023
                     /locus_tag="VGD38_07890"
     CDS             2379..3023
                     /locus_tag="VGD38_07890"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0727972.1"
                     /translation="MVKLKILLAEDHRIMREGLKRLIDEQPNMEVVGESDDGIDAWQK
                     ACELEPDIVLMDVSMPRMNGADATAKIRELCPHVKVIALTAHRASAYLNQMLKAGASG
                     YVLKHGAFDELLDAIQTVSKGGRYIDRASQEVMVNAPPDNVTWKGDPQGKPLSEREIQ
                     VISLVANGYTNKEIANQLAISVKTVESHKANSMQKLDLKSRAEIVDYARFRGWI"
     gene            complement(2996..3802)
                     /locus_tag="VGD38_07895"
     CDS             complement(2996..3802)
                     /locus_tag="VGD38_07895"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY0727973.1"
                     /translation="MPAKQRLSRRSISVLRNLRTLAYVTLTPLDYVSRLVNGKADFPP
                     LHLRRHVGPLRTFEASGAEFMTYLRLLVNLQPSESILDIGCGCGLMALQLRDFLDSDG
                     RYTGVDIHGPSIKWCANHITQPNFHFAQISDLKLPYEAQSFDVILVKSVFTHLRPEEV
                     DGCLSEVERLLKPNGRCLASFFLLNDEQRALAAQAKNAFAFNFGNNHWRYVYEHSPES
                     ASAYDQNYILELLSQHNLELSAPIHYGTWSGRKDGLSFQDLLQIQPRNRA"
     gene            complement(3811..4281)
                     /locus_tag="VGD38_07900"
     CDS             complement(3811..4281)
                     /locus_tag="VGD38_07900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727974.1"
                     /translation="MTRLIILCMLLVAGALAVEAKGRPEILGVALGESREATQAKLKA
                     IGRLEKQERKRQEVWAVNDPRVSHILVGYDPEYRVRYITAIARAGGPRIRYQDVVDVK
                     HAQRVNYQGNYKFTHEAGARRGQLAYVTIAHGRDPQYLDSYSVKRVDPKEKEID"
BASE COUNT          966 a         1231 c         1295 g          971 t
ORIGIN      
        1 tgagcggtct gcatctgaag cgagcgccgc ccgcctcgat gcgcttcttc gagcgacaac
       61 tccagttcgg cttcgacgtc gcgcccgcgt ccggtgcgtg gtcctctgcc acgtcctgcg
      121 cggctgaaga tctcttcaaa gatgtcgaaa ccctcaccac ccgagctgcg aaaaccgccg
      181 aagtcaaaat cgctgaagtc gaacccgggc tcggcgccgc cttgccgtgg tccacccgcg
      241 cgttgcgctt gttcccaacc cggcggcggc gctcccgcgc ccgacttaac cgcgcgccag
      301 ttttcaccgt actggtcgta aagctttcta tcttccggat tagccagcac gtcataagcc
      361 gcctggacct gtttgaattg ttcttcagca gctttatcgc ccgggttcaa gtcgggatga
      421 aacttgcgcg cgagttttcg ataggctttc ttgatgtcat cgtcggaagc gtcgcgcttt
      481 acgccgagca cctcgtaata atctttgata tttgcagcca tttcttcgcc gtgcaatata
      541 tgattgccga ccttgcatgg ttgtctcgtg ctgtgtagaa gtctttcgtt tttggtgttt
      601 gattcgtgga gttacgtttc aacgagcgtt gaaacagacg ggcaggtgaa aactcgcaga
      661 atgttatagg tgcgagaggc gggaaactcc cacaattccc accgtcattg gttcacgtgc
      721 cttaccccac gctaaacgcg agcgcgctca ccccagtcgg gagtgaagaa ccaaagtcac
      781 caggcctcca gagccctgtt tgcatcagga gccgatgtcc tcgcactgtg cgcgtgattg
      841 tagtgagaag acctgaccag gaaaatcggg gatttccctg agcaaagctc agggttcgcc
      901 cgctctaggc ggtgttagtt ataatccgtc aaccgacacg tcgctaaagt gtgtgtctat
      961 gcaagatacc cccacactct acgccaaact cattcactca ctcgatggca ttgtgtgggt
     1021 ggccgacgcc gaaacgtttc aattcacgtt tgtcagtcca caagcggaac ggattcttgg
     1081 ttatccaatc gagcactggt tcgagcccga cttctggcgc aaacacacgc accccgacga
     1141 ccgggactgg tgctcggcgt tttgcatgga ctcgacagaa cgcgggcagg accacgagtt
     1201 tgaatatcga atgatcgccg ctaacggcgc catcgtgtgg ttacacgaca tcgtttcggt
     1261 gcgggtcgaa cgcggaggag gtatttccct cagcggcatc atgctcgaca tcactaaccg
     1321 caaacaggcg caggacgagc tccgcaagca aaccgagatc ctgcaaaaga tcgtggacca
     1381 ccttcccatc atgatcactt ttcgggacgc ggccgggcgt ctgaaactcg tgaaccagga
     1441 atgggaacgc acgtttggct ggtcgctggc agaggcgcga aaccgcaaag gcgacatcct
     1501 gcccgaagtt tatccggatg cgtatcatct ccgccgcgcg cgcgactgga ttgccgaagc
     1561 taacggcgaa tggctcgact tcaaatcgaa aacccgcgac ggggatttga tcgatacaac
     1621 ctgggccatc gtgcgcctct cagacggaac caccgtctgc atcggccaga acatcaccga
     1681 gcgcaagcgc gccgaagaag aacgcaagca actgctgcaa cgcttgatca cggcacatga
     1741 agacgagcgg cgtcacttgt cgcgcgagtt gcacgacaac atcggccagt atctttcagc
     1801 actgcttctc ggtctcgaat cgtgtgcgcg tttgccgcag cttcccgccg cggcgttgga
     1861 caagttgtcg tacctgaaag aaacgacgaa acaactcgag ctcgacgtgc atggtgttgc
     1921 gctggagctg cggccaacaa cgctcgacga tctcggactg gaagcggcgt tgtcgagctt
     1981 gacgcgcgag tgggcgcggc gacacgagca aagaatcaaa gctgtcttca acagcaccgg
     2041 gttcaacaat cacgctgaac ggctctcgtc tgaagttgag gtcgcgatct atcgcgtggt
     2101 gcaggaagcg ttaacgaacg tttcgaggca ttcgaaagcc gacatcgtca gcgtgattct
     2161 tgcgtgcgac gatcgttacg tgcaggtgat catcgaagac aatggcgtcg gtttcgacgc
     2221 cgagaacctg atgagcgatc cggcggaaaa tcgccggctg gggttgatgg gcatgcgcga
     2281 gcgggtgcaa ctcgtcggcg gtgatttcca aatcgaatca ggcgcgggca ccacgatcgt
     2341 cgtcagcatt ccgctctcgc gaaacggatc gaatggagat ggttaagctg aaaatactgc
     2401 tggccgaaga tcatcgcatc atgcgcgaag gcttgaagcg attgatcgac gagcagccaa
     2461 acatggaagt ggtcggcgag tctgacgacg gcatcgacgc gtggcaaaag gcgtgtgagt
     2521 tggagccgga catcgtgctg atggacgttt cgatgccacg catgaacggc gctgatgcga
     2581 ctgcaaagat tcgtgagctg tgtccgcacg tcaaagtcat cgcgctgacg gcgcatcgag
     2641 cgagtgcgta tttgaaccag atgctcaagg ctggtgcttc ggggtacgtg ctcaagcacg
     2701 gcgcgttcga cgaactgctc gacgcgatac agacggtgtc gaaaggtggg agatacatcg
     2761 atcgtgcttc gcaggaagtg atggtcaacg cgccgccgga taacgtgacg tggaaaggcg
     2821 atccgcaggg aaagccgttg tctgagcgtg agattcaggt gatctcgctc gtggcaaacg
     2881 gctacacgaa taaagagatc gcgaaccagc tcgcgatcag tgtgaagacg gttgagagcc
     2941 acaaagccaa ctcgatgcag aagctcgatc tgaagagccg tgctgagatt gtggattacg
     3001 cgcggtttcg cggttggatc tgaagtaaat cctgaaacga caagccgtct tttcgaccgg
     3061 accatgtgcc gtagtggatt ggtgcgctta gttcaaggtt gtgttgggac aggagttcga
     3121 gaatgtagtt ttggtcgtag gctgacgcgc tttccgggct gtgttcgtag acgtaacgcc
     3181 aatggttgtt gccaaagttg aatgcgaaag cgttctttgc ttgcgcggcg agtgctcgtt
     3241 gttcgtcgtt caggagaaaa aaactcgcga ggcagcggcc gtttggtttt agtaatcgct
     3301 cgacctcact gagacagcca tcgacttctt ccggccgcaa atgtgtgaac accgatttca
     3361 ccaggataac gtcgaacgac tgcgcttcgt acggtagttt gagatcgctg atttgcgcga
     3421 agtgaaagtt tggttgcgtg atgtggttcg cacaccactt gatcgatgga ccgtgaatat
     3481 cgactccggt gtacctgccg tcgctgtcga gaaagtctct tagttgcagc gccatcaaac
     3541 cgcagccgca gccaatgtcc agaatgcttt cgctgggttg aaggttgacg agcagtcgca
     3601 gatacgtcat gaactccgcg ccggaagctt caaacgtgcg cagtggacca acgtgacgcc
     3661 gcaaatgcaa cggcggaaag tcggctttgc cgtttactaa gcgcgacaca tagtcgagcg
     3721 gcgttaatgt gacgtaagcg agagttcgta gatttctgag aacgctgatc gaccggcggg
     3781 agagtcgttg ctttgctggc attcacacgg ctagtcgatc tctttctcct tcggatcgac
     3841 tcttttcact gaataagaat cgagatattg cggatcgcgc ccgtgcgcga tcgtgacgta
     3901 agccaactgc ccgcggcgtg cgcccgcttc gtgcgtgaac ttgtaattgc cctgatagtt
     3961 cactcgctga gcgtgtttga cgtcaacaac gtcctggtaa cggatgcgtg gtccacccgc
     4021 gcgcgctata gccgtaatat agcgcacgcg gtactcagga tcgtagccga cgaggatatg
     4081 cgagacgcgc ggatcgttga cggcccaaac ttcctgccgc ttgcgttcct gcttctcgag
     4141 gcgcccaatc gccttcaact tcgcctgcgt cgcctcgcgg ctctcaccca aagcgacacc
     4201 caaaatctcc gggcgccctt tcgcctccac agccaaggcg cccgccacca gcagcatgca
     4261 aagaataatt agtcgggtca ttgttctttg tggttacttc gtcctcacgc tcgcgacgtt
     4321 tgaatagctc gaacgtcccc cactgttcgc cgcgcgcacg cggtagaagt aggttgtctt
     4381 gcgaaagacg gtgttgtcag tgtaactccg cgtgttcgcg ccgagagttg cgatctgaat
     4441 gtagcctccc gcaacggtcg tcg
//
LOCUS       DASWTX010000515         3025 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_30143, whole genome shotgun sequence.
ACCESSION   DASWTX010000515 DASWTX010000000
VERSION     DASWTX010000515.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3025
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30143"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..598)
                     /locus_tag="VGD38_07905"
     CDS             complement(<1..598)
                     /locus_tag="VGD38_07905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727975.1"
                     /translation="MIADRPIRIIRPPSFSPFNLLRELRGLWQYRDLFYTLSVHRIKV
                     RYKQSILGLAWAILQPLSLMLIYTVIFSKIAKVPSEGAPYAVFAYAALLPWTFFSSAL
                     TNATSGLVNHTQLVTKVYFAREILPLTYVSAALFDFCVASTFLIALFFYYGVSLTVYA
                     LWAIPIMLLLTMLVTAFSLVFSVIQVRFRDVGVAMPLLL"
     gene            complement(595..2094)
                     /locus_tag="VGD38_07910"
     CDS             complement(595..2094)
                     /locus_tag="VGD38_07910"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HEY0727976.1"
                     /translation="MRNKPEALDYEGVFPPKFSRPRESAPSDSPLEPEVVFTPSGAAA
                     LSASAAPGIATPSVPGKEKKPKPTFMEVEAGKWAPRRGHGLTFICLFIFSIVLFLRPY
                     ELIPALSGFKSMAFYVGIVTLAVYAVSQIANEGNLTARPREVNMVLLMGLAALLSIPM
                     AIDPSEAWTEFSELVIKTVLIFIVIANVVRTEWRMRMLWFLIIGVSIYLSINVISDYQ
                     AGVFKIGDAEQNTQRVMGAIKGLFDNSNDLALHLVTIIPITFALGIEKPGMIRKLVYF
                     PITLLMVAAVIITFSRGGFIGLIAMVLVLARKLSRRNKTAALATVVLGVIFFLAVAPA
                     SYSGRLATIFDSASDITGSSSQRTQVLKRSILVALRYPLFGVGIGNFHHKSFQELGTH
                     NAYTQVAAETGIAAMVCYIIFLVHPLRKLRMMEREMFERNETSHYYYLAIGLQASLVG
                     YMVASFFAAVAYQWYVYYLVGYAIALRRIYYLEQAEKLKPKEPPKYLQV"
     gene            complement(2121..2771)
                     /locus_tag="VGD38_07915"
     CDS             complement(2121..2771)
                     /locus_tag="VGD38_07915"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY0727977.1"
                     /translation="MNEELLAQRRYWNNEADAFESIYTHRKSKFSNMLDSVFRKDMYE
                     RYVFTIKNCEPIPNRTFWDVGCGNGLYSLELARKGAAKVLGLDISEVMISRCKSASKK
                     ENLDGRCQFIQTDLLEYKGTEKFDVSFGIGLFDYISDPLPVLRRMCEMTSDKVILAFP
                     RYWTWRAPIRKVRLNARGCDVYFYTKSKLDTLLREAGFQRHEVHKVGKLHCVIAYP"
     gene            complement(2771..>3025)
                     /locus_tag="VGD38_07920"
     CDS             complement(2771..>3025)
                     /locus_tag="VGD38_07920"
                     /inference="COORDINATES: protein motif:HMM:NF023385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3473 domain-containing protein"
                     /protein_id="HEY0727978.1"
                     /translation="GGGGYFRLFPYAYTKFCLKKVNDGGRPTVFYLHPWEVDPGQPRV
                     KDLSLSQKIRHYRNLDQTEKRFAKLLKDFEFTTMREVLGL"
BASE COUNT          749 a          858 c          797 g          621 t
ORIGIN      
        1 gaagcaacag cggcatcgcc acgccaacgt cacgaaagcg cacctggatg accgaaaaga
       61 cgagtgaaaa cgccgtcacc agcatcgtca gcaacagcat gatcggtatc gcccacagcg
      121 cgtaaaccgt taacgaaact ccgtaataaa agaacagcgc gatcaaaaac gtcgacgcta
      181 cacagaagtc aaacaacgcc gcactgacgt aagtcaacgg caaaatctca cgcgcaaagt
      241 aaaccttcgt taccaactgc gtgtggttca ccagtcccga agtcgcattc gtcaacgcac
      301 tcgagaagaa cgtccacggc agcagcgccg cgtaagcaaa cacggcatac ggcgcgccct
      361 cactcggcac cttcgcgatc ttcgaaaaga tcaccgtgta gatcaacatc agcgacaacg
      421 gctgcaggat cgcccacgcc aacccgagta tcgactgctt gtagcgaacc tttatgcgat
      481 ggacgctgag cgtgtagaac agatcgcggt actgccagag cccgcgcaac tcccgcagca
      541 aattgaacgg ggaaaaggac ggtggacgaa tgattctgat ggggcggtct gcaatcacac
      601 ttgtaagtat tttgggggtt ctttgggctt aagtttttcg gcttgttcca ggtagtaaat
      661 tcgccgcaag gcgatggcat agccgacaag ataatagacg taccactgat acgcgacagc
      721 ggcgaagaaa ctcgccacca tgtaacctac caaactggct tgtagtccga tcgcaagata
      781 gtagtaatgc gaagtctcat tgcgctcgaa catctcacgt tccatcatgc gcagcttccg
      841 caacgggtgc acgagaaaaa tgatgtagca aaccatcgcc gcgattccgg tctcagcggc
      901 aacctgcgtg tacgcgttgt gcgtgcccag ttcctgaaac gacttgtgat gaaagtttcc
      961 gataccaacg ccgaacaacg gatatcgcaa ggccaccaga atcgatcgct tcagcacctg
     1021 cgtgcgttgg ctcgaagagc cggtgatgtc ggacgctgag tcgaagatcg tggcgagccg
     1081 gccggagtaa ctcgcgggcg ctaccgccag gaaaaagata actccgagaa cgactgtcgc
     1141 gagcgcggcg gtcttattgc gccggctgag tttgcgcgcc agcaccagca ccatcgcgat
     1201 caagccgata aatccgccgc gcgagaacgt gatgatcaca gccgccacca tcagcaacgt
     1261 gatgggaaaa tagacgagct tgcgaatcat cccgggcttt tcaatgccga gcgcgaaagt
     1321 gatcggaata atcgtcacga ggtgcagtgc gagatcgttt gagttgtcga acaggccttt
     1381 gatcgcgccc atcacgcgct gcgtgttttg ctctgcgtcg ccgatcttga aaacgcccgc
     1441 ctggtaatcg gaaataacgt tgatgctgag atagatactg accccgatga tcaggaacca
     1501 gagcattcgc atccgccact cggtacggac cacgtttgcg atcacgataa agatcaggac
     1561 ggtcttgatt acgagttcgg aaaactcggt ccacgcctcg gacggatcga tcgccatcgg
     1621 aatcgacagc aacgcggcca ggcccatgag caggaccatg ttcacttctc tcggccgcgc
     1681 agtcaggttt ccctcgttgg ctatctgact gacggcgtaa accgcgagcg tcacgatgcc
     1741 gacgtagaac gccatcgact tgaaccccga gagcgcggga atcaattcat acggccgcag
     1801 gaacaaaacg atgctgaaaa taaagagaca gatgaacgtc aggccgtggc ccctgcgcgg
     1861 cgcccacttc cctgcttcca cctccatgaa ggtcggtttt ggtttctttt ccttgcccgg
     1921 aaccgacggc gtggcaatgc ccggcgccgc gctcgcagaa agcgcagccg cgccggaggg
     1981 agtaaaaact acctccggct ctagcggtga atctgatggg gcactttcgc gaggacgcga
     2041 gaacttcggg ggaaagacgc cttcgtaatc gagagcttcg ggcttatttc tcatgcctta
     2101 atctgaccag tccggcgttt ttacggatac gcaatcacgc aatgaagctt gccgactttg
     2161 tgtacctcgt ggcgctgaaa accagcctca cgaagcaacg tgtcgagttt tgatttcgtg
     2221 tagaagtaga cgtcgcaacc gcgcgcgttc agtctaactt tgcggatcgg cgcgcgccag
     2281 gtccaataac gcggaaacgc gagaatcact ttgtcggaag tcatctcgca catcctacgc
     2341 agcaccggca gcgggtcgct gatgtagtca aacaagccga tgccgaaact gacgtcaaac
     2401 ttctcggtac ctttgtattc aagcaggtcc gtctgaataa actggcagcg gccgtcgagg
     2461 ttctctttct tgctcgccga cttgcatcgg ctaatcatca cttccgaaat atcgaggccc
     2521 aaaactttcg ccgcgccttt acgcgcgagc tcgagactgt agagaccgtt tccacagccg
     2581 acgtcccaaa acgttctgtt gggaataggc tcgcagtttt tgatcgtgaa cacgtagcgc
     2641 tcgtacatgt ctttgcgaaa cacgctgtcg agcatgttcg aaaatttcga cttgcgatgc
     2701 gtgtaaatac tttcaaacgc atcagcctcg ttgttccaat accttcgctg ggcaagtagc
     2761 tcttcgttca tcacaggcca agcacctctc tcatggtcgt aaactcaaaa tcttttagta
     2821 acttcgcgaa tctcttctcg gtttgatcta agttgcggta gtgtcgaatc ttttgcgaaa
     2881 gagacaaatc cttcacgcgc ggctggcccg gatcgacttc ccacgggtgc aggtagaaca
     2941 ctgtgggcct tccgccgtcg ttcactttct tcaaacaaaa cttggtgtag gcgtagggaa
     3001 acaggcggaa ataaccgccg cctcc
//
LOCUS       DASWTX010000516         3104 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_399672, whole genome shotgun sequence.
ACCESSION   DASWTX010000516 DASWTX010000000
VERSION     DASWTX010000516.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3104
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_399672"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1108)
                     /locus_tag="VGD38_07925"
     CDS             complement(<1..1108)
                     /locus_tag="VGD38_07925"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0727979.1"
                     /translation="MSPRSRLALVPLFAVVCLLTCASAAMAQHEPATGGGTIGGGSTS
                     RPSSKPATKPANKPSTSATTPGTRTPSTRRTTPASTRKPTTTTTPTTSSATTTKPTTR
                     PTTTPTTANATAANTYYQQGEARYNAKQYNEALESYLKAVQLNPSMANALYRIGWIYN
                     DLEDFESAIDPLKRVISMQPTNAAAHFELGYANKKLDRLAEAISAFQQAVRNKPDYAG
                     AHYQIGWIHNEQKNYDDAIASLKSALSYRANYPEAHNELGYALRNLGRYSEAIDEYEE
                     AIKQNPDLALAHLGLGDVYYYNTKEYAKAAAAYKRGLDLSPNNATAFYNLGWCYNDLE
                     RYSEAVAELQNAIRLKPTYAEAYNECGYALHQLRR"
     gene            1355..1430
                     /locus_tag="VGD38_07930"
     tRNA            1355..1430
                     /locus_tag="VGD38_07930"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1389..1391,aa:Glu,seq:ttc)
     gene            2327..3010
                     /locus_tag="VGD38_07935"
     CDS             2327..3010
                     /locus_tag="VGD38_07935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727980.1"
                     /translation="MSRIVIALCAFLLLAIAPPVEADPIVITGGTLTVTGAIPGGPRF
                     TLTGDNFSVSGGGEQGSSPSCFPCRSGDFISVGGFFAGSSLRSGTVIVDGMTFSGLMS
                     GQLVFTGPPLLIPEAMTNISISGPFTMRGFIDVCAFKPIPSLPDCGGNDVLFTTDLVG
                     QGIVTINLTFLRILNDRPLFQMSSVTYTFQEAEIPEPTTITLLTFGIIGLGAKRAYKQ
                     RRGRKAPLS"
BASE COUNT          595 a          827 c          912 g          770 t
ORIGIN      
        1 agcggcgtag ttgatgaaga gcgtagccgc actcgttgta agcctcggcg taagttggct
       61 tcaggcggat tgcgttttgt aactctgcga cagcttcgct gtagcgttcg agatcgttgt
      121 agcaccagcc gaggttgtag aaggcggttg cgttgtttgg gctgaggtcg agtccgcgct
      181 tgtacgcggc ggcggctttc gcatactcct tcgtgttgta gtaatagacg tcgccgagtc
      241 cgagatgcgc gagcgcgaga tcgggatttt gtttgatggc ttcctcatac tcgtcgatgg
      301 cttcggagta gcggccgagg tttctgagtg cgtaaccgag ctcgttatgg gcttcggggt
      361 aatttgcgcg atacgaaagg gcggacttca gactcgctat cgcgtcgtcg tagttcttct
      421 gctcgttatg gatccaaccg atttgataat gtgcgccggc gtagtcgggc ttgttgcgta
      481 cggcttgctg gaaagcgctg attgcttcgg ccaggcgatc gagtttcttg tttgcgtagc
      541 ccaactcgaa gtgagcggcc gcgttcgtgg gctgcatcga gatgacgcgc ttgagcggat
      601 cgatggctga ttcgaaatct tcgagatcgt tgtagatcca gccgatgcga tagagcgcgt
      661 tggccattga ggggttgagt tggaccgcct tgagatacga ctcgagcgct tcgttgtact
      721 gcttcgcgtt gtagcgcgct tcgccttgtt ggtagtaagt gtttgcggct gtggcgttcg
      781 cggtggttgg ggttgttgtt ggccgtgtcg tcggctttgt agttgtggct gacgaagtag
      841 ttggcgttgt agtcgtcgtt ggcttacgtg ttgacgccgg tgtcgttcgt cttgttgacg
      901 gcgttctggt tcccggtgtg gtcgcgctcg tagacggttt gttcgccggc tttgtcgccg
      961 gtttactgct cgggcggctg gtgctgccgc cgccgatcgt tccgccgccg gtggcgggtt
     1021 cgtgttgcgc catcgcggcg ctggcgcagg ttagcagaca aacgacggca aaaagaggga
     1081 ctaaagcaag ccgggaccgg ggtgacatca gattttctcc tgcggttatg acagcgttgt
     1141 tttcgcgtct tgattgccgt tgaagtggaa cggcgacgaa ctgctgcggg cattataggt
     1201 tggaaagtgg tgtggtggga atgggtgttg atgggtagtt tgatttttaa gaactgtccc
     1261 agcacttcaa cgacgcagcg cgcgcgtttg acagccccaa actcattacg ttaacgtaac
     1321 gcgcttgccg tagagcacga acaactcacc ttgcgtcccg ttcgtctagc ggcctaggac
     1381 accgcccttt cacggcggcg acacgggttc gattcccgta cgggacgcca atactaatca
     1441 cttacaagaa gtcatatcgc ccgtttatcc agtaatcata gatcgcgcca acgcgcagct
     1501 tgcgaatgtc gctatcaata acgacaacgg cctgttaata ctctcgactg ccgcccgttt
     1561 aatcttgtgt actgactttc cgccaaccca tccttcttct ttgcgcactg atattcactg
     1621 agggcccacg cagacgccgg acaaaggcaa acttgaccag ttttttaacc gactcgccga
     1681 aaagaataag gcgatgggca gtctcaccgt aaccaaagag ggtgccgtga cgatcacacg
     1741 cgacaaggcc acgcttgtcg caccgccaac tggacagccc gctttcccac ttaaagccat
     1801 cgcggagaat aaatttaagt tggaattcag gggcgcagtc ttggaattcg acgccgctaa
     1861 aactcagctg acctttagag gcggtcggga cgttcttttc acgaaggaac tctgagagtc
     1921 aaagaaaggc tcaggctgca agacgtatct cccacgagaa ttttattgaa ctcatcaatg
     1981 gccgcctccg acgatcgcga ggtgttgcgc gccgtcggcc gcgatctgcg gcggaagtat
     2041 ggtagcgact atcgcgtgtt gcgtgcggga tcgggagttg tttctgattt tcagctcccg
     2101 aacgatatcg agcgcctccg gacccgtcga ccgcgagcaa aacccgtcgc cataaatact
     2161 ccgaagcgtc cattctgtca cgtactaaga actggcgatc cgctcaggaa cgtctatgcg
     2221 aatcattgct cgggtgatat actgccgccc tcccaatcac cccttgttag cccaacaacc
     2281 ccaagggttg cctgcacact ccttctctcc ctttaggagg cttatcatgt ccagaatcgt
     2341 tatcgcgtta tgcgcttttc tactgctggc tatcgcaccg ccggtagaag cagatccaat
     2401 cgtaatcacc ggcggtactc tgacagtcac aggggcgatc cccggtggcc ctcgttttac
     2461 cctaaccgga gacaactttt ccgtcagcgg tggaggtgag caaggctctt cgcccagttg
     2521 ttttccctgc cggagcggtg acttcataag cgtcggcggt ttctttgccg gtagcagcct
     2581 ccggtcaggc acggtgatcg ttgacgggat gacgttcagc ggtttgatga gcggccagct
     2641 agtgttcacc gggcctcccc tactcatacc ggaggcgatg acaaacatct ccatatccgg
     2701 gccgttcacg atgcgcggct ttatcgatgt gtgtgcattc aagccgatac cgtcgctacc
     2761 cgattgtggc gggaatgacg tgctcttcac caccgacctc gtgggacaag gtatcgtgac
     2821 gatcaacctc accttcttgc ggatcctcaa cgaccggccg ttattccaaa tgtcgagcgt
     2881 aacttacacg ttccaagagg cagagatccc cgagccgacg accatcacgc tgctgacgtt
     2941 tggaatcatc ggcctcggtg cgaagcgcgc ttataaacaa aggcgtggcc ggaaggctcc
     3001 gcttagttga ctctgaacgg cgctgtggcg gttgctgaat ttccggcttg atcgaaggcg
     3061 cgtacgacga tcgtatagag ttgaccgtct ttgtccgaac cgtt
//
LOCUS       DASWTX010000517         2204 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_334452, whole genome shotgun sequence.
ACCESSION   DASWTX010000517 DASWTX010000000
VERSION     DASWTX010000517.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334452"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..475
                     /gene="nusG"
                     /locus_tag="VGD38_07940"
     CDS             <1..475
                     /gene="nusG"
                     /locus_tag="VGD38_07940"
                     /inference="COORDINATES: protein motif:HMM:TIGR00922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEY0727981.1"
                     /translation="LQNEITEVLVPTETVVEMRGNKRIESSRMFYPGYVLVQIDCDER
                     GHIPDNVFHMIKSTPKVTGFVGGHNPTPLTPQEVDQIVNQQAEAAEKPKPKFSYAAGE
                     TVRIKSGPFQSFTGKVEEVNDDKSTLKVTVTIFGRSTPVELNFLDVEKVTFAEEE"
     gene            478..903
                     /gene="rplK"
                     /locus_tag="VGD38_07945"
     CDS             478..903
                     /gene="rplK"
                     /locus_tag="VGD38_07945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006676477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEY0727982.1"
                     /translation="MAKKITGYIKLQVPAGKANPAPPIGPALGQHGVNIMEFCKAFNA
                     KTAQMDPDLKVPVVITVYADRSFTFETKTPPAADLLKKAAGIPKGSGKPNREKVGAIS
                     KAKIEEIAKTKMPDLNTTSLESAIRTIEGTARQMGLTVE"
     gene            957..1652
                     /gene="rplA"
                     /locus_tag="VGD38_07950"
     CDS             957..1652
                     /gene="rplA"
                     /locus_tag="VGD38_07950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009880170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEY0727983.1"
                     /translation="MKKHGKKYRAALEKIDAGRKYDLDSGIAKVKEISFAKFDETVEL
                     TMWLGVDPRKADQLVRGTIVLPHGLGKSKTVLVIAQGDKLREAEEAGADIVGGEDIVN
                     RIKGGWTDFDAVISTPDMMRLVGQLGKVLGPRGLMPNPKTGTVTFDVATAVKETKAGK
                     VEYRVDKTGVIHVGVGKVSFESNKLRENAKALLDAVVKAKPATAKGKYVKKVNLASTM
                     SPGVLLDEAAFAK"
     gene            1671..2195
                     /gene="rplJ"
                     /locus_tag="VGD38_07955"
     CDS             1671..2195
                     /gene="rplJ"
                     /locus_tag="VGD38_07955"
                     /inference="COORDINATES: protein motif:HMM:NF000955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEY0727984.1"
                     /translation="MKSREQKQKDLEALVEQFKNARAAMLVGFQKMSVAKDQELRNQL
                     REAGVSYEVVKNTLARIASQGTELEQAAEHFKGVTAVALSQGDPVGLSKAISKFSKAN
                     PDIFTFKVGIVEGKVVELREVEAIASLPSKEELISKVMFLINCQAQRLVTVISAVPRN
                     LAVVVKQIGEQKTA"
BASE COUNT          555 a          537 c          689 g          423 t
ORIGIN      
        1 tctgcaaaac gagatcaccg aggtgttggt gccgactgaa accgtcgtcg agatgcgcgg
       61 aaacaagcga atcgaatcct cgcgcatgtt ctacccgggt tacgtactgg tgcagattga
      121 ctgcgacgag cgcggccata ttcccgataa cgtttttcac atgatcaagt cgacgcccaa
      181 ggtcacggga ttcgtcggcg gtcacaatcc gacgcctctg acgccgcagg aagtggatca
      241 gatcgtgaac cagcaggccg aggcagcgga gaagccgaaa ccgaagtttt cgtatgcggc
      301 gggcgagact gtacgtatca agtcggggcc gttccagagt tttaccggca aggttgaaga
      361 ggtgaatgac gacaagtcga cgctgaaggt tacggtgacg atcttcggcc gctcgacgcc
      421 ggttgagttg aacttcctcg atgttgagaa agttacgttt gcggaagaag agtaaagatg
      481 gcaaagaaga ttaccggtta catcaaatta caggttcccg cgggcaaggc gaatccggcg
      541 ccgccaatcg gaccggcgct cggtcagcac ggcgtgaaca tcatggagtt ctgcaaggcg
      601 ttcaacgcca agaccgcgca gatggatccc gatctgaaag tgccggtcgt gatcacggtt
      661 tacgcggatc gctcgttcac gtttgaaacg aagactccgc cagcggctga cttgctgaag
      721 aaggccgccg gcattccgaa ggggtcgggc aagccgaacc gtgaaaaggt cggcgcgatt
      781 tctaaggcga agatcgaaga gatcgccaaa acaaaaatgc ctgacctgaa cactacgagt
      841 cttgagtcag ctattcgcac gatcgaaggc acggcaagac agatgggcct gacggtcgaa
      901 taagcgtagc gttgagaggg aggggataaa accccgatcg cacctcggag ttgataatga
      961 agaaacacgg aaagaagtac cgcgccgcgc tggagaagat cgacgcggga cggaaatacg
     1021 atctcgactc aggcatagcc aaagtcaaag agatctcctt cgcgaagttt gacgaaacag
     1081 ttgagttgac gatgtggctg ggagtcgatc cacgcaaagc ggatcagctc gtccgcggca
     1141 cgatcgtgct gccgcacggt ctcggcaagt cgaaaaccgt gctcgtgatc gcccagggcg
     1201 acaagcttcg tgaagccgaa gaagccggcg cggacatcgt cggtggtgag gacattgtga
     1261 accgcatcaa gggcggctgg acggatttcg acgccgtcat ttccacgccc gacatgatgc
     1321 ggcttgtcgg tcagctcgga aaagtgctcg gcccgcgcgg cctgatgccc aatccgaaga
     1381 ccggcaccgt cacgtttgac gtggcgaccg cggttaaaga aaccaaagcc ggtaaagtcg
     1441 agtatcgcgt cgacaagacg ggcgtgattc acgtcggtgt cggtaaagtc tcgtttgaga
     1501 gcaacaagct gcgcgagaac gcgaaggcgc tactcgacgc ggtggtgaaa gcaaaaccgg
     1561 caacggccaa gggcaagtac gtgaagaaag tgaatcttgc ctcgactatg agtcccggcg
     1621 ttttgttgga cgaagcggcg tttgccaagt aaatcgatag gagctgaagc atgaaatcaa
     1681 gagaacaaaa acagaaagac ctcgaggctc ttgtcgaaca gtttaaaaac gccagggccg
     1741 cgatgctggt tggttttcag aagatgtcgg tggcgaaaga ccaggagctc cgcaatcaac
     1801 tgcgtgaggc cggtgtttcg tacgaagttg taaagaacac gctggcgcgg atcgcgtcgc
     1861 agggcaccga gctcgagcag gcagccgagc atttcaaagg tgttactgcg gtggcgttga
     1921 gccagggcga tccggttggt ttgtcgaagg cgatttcgaa gttttcgaaa gcgaacccgg
     1981 acatttttac gttcaaggtc ggtattgtcg aaggcaaggt ggtggagctt cgcgaggttg
     2041 aagccatcgc gagtttgccc tcgaaggaag agttgatttc gaaggtaatg tttttaatca
     2101 attgtcaggc gcagcgtctg gtgacggtca tttccgccgt gccgcgtaac ctggctgtag
     2161 ttgttaagca gatcggcgag caaaagaccg cttaggattt ttca
//
LOCUS       DASWTX010000518         1503 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_418102, whole genome shotgun sequence.
ACCESSION   DASWTX010000518 DASWTX010000000
VERSION     DASWTX010000518.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_418102"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1184)
                     /locus_tag="VGD38_07960"
     CDS             complement(<1..1184)
                     /locus_tag="VGD38_07960"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEY0727985.1"
                     /translation="MAEILKLTLIVILGFGLRVTQLGAIGFAEDEMNKLDAIHAYERG
                     DFSVNSEHPMVMKLLMWASVNKAPVSSLETALRLPNVLIGALTVIPLFLLTLAFFDRW
                     TALLAAAFWAFGINAITLNRIGKEDSLLVFFMLVGFFFFVRAKQLSPADKTGRARRYA
                     ASAVSFGLMIASKYFPHYLGLNMLFHHNFHVREARPDEPNGHTPGWFFIVIVGVFLLV
                     SPAVLMPEVWQYMNAYTGEKLLTHSGYLFAGQLYKNNMSSSPFWGTPIYFYLLFLAVK
                     VPIVTLLAFVAGIFIAVRRPRHVGHAFLLFMFLFWIIPYSLIGGKWLRYTLSVMPFVY
                     MLAAVGVVALVRWATARFSHSRRAGLALSVIAVVVFVCLPAWTAFANRPHYALYTNAF
                     AA"
BASE COUNT          380 a          399 c          444 g          280 t
ORIGIN      
        1 tcggcggcga acgcgtttgt gtagagcgcg taatgtggcc ggttcgcaaa ggcggtccag
       61 gcgggtaaac agacgaacac cacgaccgcg attacagaca acgcgagacc cgcgcgccgc
      121 gagtgtgaga aacgcgcagt cgcccaacgc accaaagcca ccacaccgac ggccgcgagc
      181 atgtaaacaa aaggcatgac cgacaacgtg tatcgcagcc acttaccgcc gatcagcgag
      241 taaggaatga tccagaacaa aaacatgaac agcagaaacg cgtgaccgac gtggcgcggg
      301 cgccgcaccg cgatgaaaat cccagcgacg aatgcaagca gcgtcacgat cggcactttg
      361 accgccagaa acagcaggta gaaatagatc ggcgtgcccc agaacggcga gctcgacatg
      421 ttgttcttgt aaagctgtcc cgcaaacaaa tagcccgaat gcgtcaacag cttttcgccc
      481 gtgtaggcgt tcatgtactg ccaaacttcc ggcatgagca ccgccgggct caccagcagg
      541 aacacgccca cgatcacgat gaagaaccag cctggcgtgt ggccgttcgg ctcgtccgga
      601 cgcgcttcgc gcacgtgaaa gttgtgatgg aacagcatgt tgaggccgag atagtgcggg
      661 aagtatttcg acgcaatcat caatccgaat gagacggcgc tggcggcgta gcggcgcgcg
      721 cggcctgttt tgtccgcggg tgagagctgt ttggcgcgca cgaagaagaa aaacccgaca
      781 agcatgaaga agacgagtag cgagtcttct ttgccgatgc gattgagcgt gatcgcgttg
      841 atgccgaacg cccaaaacgc tgctgcgagc agtgcggtcc aacggtcgaa gaaagcgagc
      901 gttaagagga aaagcgggat gacggttaaa gcgccgatca ggacgtttgg caaacgcagc
      961 gctgtttcga ggctgctcac gggggctttg ttcacggaag cccacatcag cagcttcata
     1021 accatcgggt gttcggagtt tacggagaag tcgccgcgct cgtaggcgtg aatggcatca
     1081 agtttgttca tctcgtcttc ggcgaagccg attgcgccga gctgggtgac gcgcaaaccg
     1141 aaaccgagga tgacgatgag agtgagcttt aaaatctcag ccacgggtaa atctcaaatc
     1201 aagaaccgta cctgacgttt gttagcttag accaaaatgg cttatggtat ttatccacgg
     1261 attacacaga cagtgtatta aatctgtgta atccgtggaa aagctcgtgc cggaagttga
     1321 ttacacttgg acaatctagt tacttcaaat attcgtcaac gaccgattcg cacgctggtg
     1381 agcgttgcgg ggatcgcgct gggtgtcagc ctggtgatgc tgtttacggg tctcgcccgc
     1441 ggcatgtcaa acgacctcca acgccgtgca agcaacgttc gcgctgagct gatcttcatg
     1501 cgt
//
LOCUS       DASWTX010000519         1564 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_244588, whole genome shotgun sequence.
ACCESSION   DASWTX010000519 DASWTX010000000
VERSION     DASWTX010000519.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1564
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244588"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1261)
                     /locus_tag="VGD38_07965"
     CDS             complement(<1..1261)
                     /locus_tag="VGD38_07965"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY0727986.1"
                     /translation="MSHQLHFGSSMPDNPQTIVNVPRVGDVVLRDGSTVHIRVMRPED
                     EAGLCALLNSLSDESRWLRFYCQQNSAAIAAEAHREASLDHAFCLVASSGDGERVVGH
                     AFYVGIDDERAEVAFTIANDFQGRGLGTILLGQLAEVAAANGIKVFEAEVLAANHAML
                     HVFRASGFPIEVSAYAGQLSVVFPTSFTDEARKQFERRDSIASVNALKLFFEPRAVAV
                     IGASRQRGTIGGEILHNLLSYGFKGAVYPVNPAADEIEGVRAFPSVEAIPGPVDLAVI
                     VVPAAKVVEVAAACARKGVKALVVISAGFSDTGKEGKARQAELMSVCRNAGMRLIGPN
                     CMGIANTNPEVLLDATFAPGIPPRGRVGFSSQSGALGLAIMEFAGSLGLGISTFVSVG
                     NKADISGNDLLRYWEADDDTDVILLYLE"
     gene            complement(1258..>1564)
                     /locus_tag="VGD38_07970"
     CDS             complement(1258..>1564)
                     /locus_tag="VGD38_07970"
                     /inference="COORDINATES: protein motif:HMM:NF024304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEY0727987.1"
                     /translation="EGDYLYSHSLPGMKIKALREYPRACVQVDEIESDLRWRSAIAFG
                     KFEEIVKSNERAEVLTKLLRKFPLLTPVESAIAVDGAPPEVIVFRISIERLTGVSEG"
BASE COUNT          375 a          505 c          399 g          285 t
ORIGIN      
        1 attcgagata cagcaagatc acgtccgtat cgtcatcagc ttcccagtag cgcaaaagat
       61 cgtttccgga aatgtcagcc ttgttaccga cagaaacaaa cgtcgaaatg ccaaggccaa
      121 gcgaaccggc aaactccatg atcgccaaac cgagcgcgcc gctctgcgat gaaaaaccaa
      181 cgcggccgcg cggcggaatg ccgggagcaa acgtcgcatc gagcaacact tccggattcg
      241 tgttggcgat gcccatgcag tttggtccaa tcaatctcat gccggcgttg cggcaaacac
      301 tcatcaactc cgcctggcgc gccttccctt ccttaccggt gtccgaaaaa ccggcggaga
      361 tcacgacgag cgctttcaca cctttgcgcg cgcacgcggc cgcaacttca acgactttcg
      421 ccgccggaac gacgatcacc gccagatcaa ccgggcccgg aatcgcttca accgacggaa
      481 acgcgcgcac accctcaatc tcatccgcag cgggattaac cggataaacc gcgcctttga
      541 atccgtagct caacaggtta tgaagaatct cgccgccgat cgtgccgcgc tgtcgcgaag
      601 cgccgatcac cgcaaccgcg cgcggttcga aaaacagttt cagagcattc acggacgcga
      661 tcgaatcgcg gcgttcgaac tgtttgcgag cctcgtcagt aaacgaggtc ggaaaaacca
      721 cggaaagctg tccggcatac gcgctcactt cgatcggaaa ccccgacgcg cgaaacacgt
      781 gcaacatcgc gtggtttgca gcaaggacct ccgcctcaaa caccttgatc ccgtttgccg
      841 cggcgacttc cgcaagctgg cccaacagga tcgtaccgag tccgcgtccc tgaaaatcat
      901 tcgcgatcgt aaacgcaact tcagcgcgtt cgtcgtcaat cccaacgtaa aaggcgtgtc
      961 ccacaacgcg ttcgccatca ccactcgaag cgaccagaca aaacgcgtgg tccaggctag
     1021 cttcacgatg cgcttcagca gcgatcgcag cgctgttctg ttgacaataa aatctcagcc
     1081 agcgcgattc gtctgaaagc gagttcaaca acgcgcagag tccggcctca tcctctggac
     1141 gcatgacgcg aatgtgaacc gtcgagccgt cgcgcagaac gacgtcgccc acgcgaggca
     1201 cgttcacgat cgtttgtggg ttatcaggca ttgacgagcc gaagtgtagc tgatggctca
     1261 cccttccgaa actcctgtca ggcgttcgat gctgatccga aacacaatca cctcgggcgg
     1321 cgcgccgtcg acagcaatcg cggattcaac cggtgtcagc aggggaaact tgcgcagaag
     1381 tttcgtgagc acctcggcac gctcgttgga tttgacgatc tcctcaaact tgccgaaagc
     1441 aatcgcactg cgccagcgca gatcactctc gatctcatca acctgaacac acgcgcgtgg
     1501 atactcacgc aaggccttga tcttcattcc cggcagcgag tgactgtaca ggtagtcccc
     1561 ttcc
//
LOCUS       DASWTX010000520         1748 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_244599, whole genome shotgun sequence.
ACCESSION   DASWTX010000520 DASWTX010000000
VERSION     DASWTX010000520.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244599"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..654
                     /locus_tag="VGD38_07975"
     CDS             <1..654
                     /locus_tag="VGD38_07975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727988.1"
                     /translation="GDKPQAGLVKATVNGITGSASARVFPPLPWSENFDAMAPNTVPA
                     TWNNMTLKFAVRDQNGNKVLAKLTEGSSLLTRSRAYIGPSDWSNYTVESDIFATTKRR
                     QQGDAGVIAQRYVLTLYGNSQTLHIEPWQPETKRTVSMPFAWKPDTWYRLKLQVENLP
                     DGKTRARGKVWPAGEAEPAAWMIERVDPIPNRQGAPGIFGNGLAELYFDNIKVYANK"
     gene            651..>1748
                     /locus_tag="VGD38_07980"
     CDS             651..>1748
                     /locus_tag="VGD38_07980"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY0727989.1"
                     /translation="MRVKNLVLLIALILGVGIYFLAPATSASDPGSTDWPMWGGTPDR
                     NMVSSMKGLPTSWDVKTKKNVKWVAQLGSQTYGNVVVSGGTVFVGTNNEGLRDPKITG
                     DKGILMAFRESDGEFLWQMVHDKLAAGRVNDWPYQGVASSPLVEGDRVYYVSNRAELM
                     CLDTQGFRDKENDGPVTDEKLNREVDGDVVWRFDMIEEVGALPHNLANSSPVSHGDLI
                     FVSTSNGQDESHVNVPSPKAPAIIAINKKTGKLAWEDNSVGEKILHGQWSSPTVGTIG
                     GVVQVVHGQGDGWVRGYEALTGKKLWEFDTNPKDSVWPKTRNELISTAVIYQDRVYIS
                     NGQDPEHGEGVGHMYCIDATKRGDITKDGMVW"
BASE COUNT          397 a          487 c          528 g          336 t
ORIGIN      
        1 ggcgataaac cgcaggccgg ccttgttaag gcaacggtga atggtattac gggttctgcg
       61 agcgcacgcg tgtttccgcc gttgccgtgg agtgaaaact tcgacgcgat ggcgccaaac
      121 acggtgccgg cgacgtggaa caacatgacg ctgaagtttg ccgtgcgcga tcagaacggc
      181 aacaaagtgc tcgcgaagct gaccgagggt tcgtcgctgc tgactcgttc gcgcgcttac
      241 atcggaccgt ctgactggtc caactacacg gtcgagtcgg atatcttcgc caccaccaag
      301 cgacgtcagc aaggcgacgc aggcgtgatt gcgcaacgtt acgtgttgac gctttacggc
      361 aacagtcaga cgctgcacat cgagccgtgg cagccggaaa cgaagcgcac cgtcagcatg
      421 ccgttcgcgt ggaaacccga cacgtggtat cgcctgaaac tacaggtgga gaacttgccg
      481 gacggcaaga cacgcgcgcg cggaaaagtt tggcccgcgg gtgaggcgga acccgcagcc
      541 tggatgatcg agcgcgtcga tccgattcct aaccgccagg gagctcccgg aatcttcggc
      601 aacggcctcg ccgaactcta ctttgacaac ataaaggtgt acgcgaacaa atgagagtta
      661 aaaatctggt tctacttatc gcactgattc tcggcgttgg catttacttt ctcgcacccg
      721 cgacttctgc ttcggatccc ggttcgactg actggcccat gtggggcggc actcccgacc
      781 gcaacatggt ttccagcatg aaaggcctcc cgaccagttg ggacgtcaaa accaaaaaga
      841 acgtgaagtg ggtggcccaa ctcggttcac aaacttacgg caacgtcgtc gtctccggcg
      901 gcacagtctt cgtcggcacg aacaacgaag gactgcgcga tcccaagatc acgggcgaca
      961 aaggaatcct gatggcgttt cgtgaatcgg atggcgagtt tctgtggcag atggtccacg
     1021 acaagcttgc ggccggccgc gtgaacgact ggccctacca gggcgtggcg tcgtctccgc
     1081 tggtcgaggg cgatcgcgtt tactacgttt cgaatcgcgc ggagttgatg tgtctcgaca
     1141 cgcagggttt tcgcgataaa gagaacgacg gtccggtgac tgatgaaaaa ctgaaccgcg
     1201 aggtcgacgg cgacgtcgtt tggcggttcg acatgattga ggaagtcggc gcgttgccgc
     1261 acaacctcgc aaactcatcg ccggtttcgc acggcgacct gatctttgtc agcacttcaa
     1321 acggtcagga cgagagtcac gtcaacgttc cctcgcccaa agcaccggca atcatcgcca
     1381 tcaacaagaa gacgggcaaa ctcgcgtggg aagacaattc tgttggggag aagattcttc
     1441 acgggcaatg gtcttcgccg accgtgggca caatcggcgg cgtggtccag gttgttcacg
     1501 gacagggcga cggctgggtt cgcggttatg aagcactgac gggcaagaaa ctttgggagt
     1561 ttgacaccaa cccgaaagac tccgtttggc ccaagacgcg caacgagctc atcagcacgg
     1621 ctgtgattta tcaggatcgc gtttacatct cgaacggtca ggatccggaa cacggcgaag
     1681 gtgtgggcca catgtattgc atcgatgcta ccaaacgcgg cgatatcacc aaggacggta
     1741 tggtctgg
//
LOCUS       DASWTX010000521         1818 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_30166, whole genome shotgun sequence.
ACCESSION   DASWTX010000521 DASWTX010000000
VERSION     DASWTX010000521.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1818)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1818)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30166"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..785)
                     /gene="bamD"
                     /locus_tag="VGD38_07985"
     CDS             complement(<1..785)
                     /gene="bamD"
                     /locus_tag="VGD38_07985"
                     /inference="COORDINATES: protein motif:HMM:NF024915.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HEY0727990.1"
                     /translation="MSSKLDSMRRSLSSALAAMPENKDKKANADDPVVRLKGLEKEVS
                     SLASEVNDIRTKNDKAEKFDPADVDRLETSVAELNTRVDQGLQQTASARTGSGAVASS
                     DKKKKKKGKLFGLFGGGEDKYADLTGAAVAGRDRVLFEEAAKEVRKGRHDTGRLLFAT
                     IINTYPDSPFLPLAKLAIADSFFLEGTTSALIQAAQAYQDWLTFFPTDPLADDASLKV
                     AEAEMRQMGLSDRDISHARKAEQRLKVLLQQYPQSPLRGTVEAR"
     gene            complement(1024..1701)
                     /gene="rpe"
                     /locus_tag="VGD38_07990"
     CDS             complement(1024..1701)
                     /gene="rpe"
                     /locus_tag="VGD38_07990"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: protein motif:HMM:NF004076.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEY0727991.1"
                     /translation="MLNQRNIDIAPSILSADFSCLGDQIQAVERGGAGVLHVDVMDGH
                     FVPNITIGLPVVKSLAKFTGLPLDTHLMITDPGTYAVQFVEAGAQMVSVHVEADVHLH
                     RTLTAIRAAGAQPGVVLNPATPVGAVEEALQFVDYVLVMSVNPGFGGQPFIPQALDKV
                     KRLRQMIVERQLNVRIEIDGGIDRSNIERVVAAGAEIIVAGSAIFGKPDAEAAVRELR
                     EATVQWV"
BASE COUNT          355 a          551 c          521 g          391 t
ORIGIN      
        1 cgcgcttcca ccgtcccgcg cagcgggctc tgcggatact gctgcaacag gactttcaat
       61 cgctgctcgg ccttgcgcgc gtgcgaaatg tcgcggtctg acaaacccat ctgccgcatt
      121 tcggcttccg cgactttcaa actcgcgtcg tcagcaagcg gatccgtcgg gaagaacgtg
      181 agccagtcct ggtaagcctg cgccgcctga atcaacgcgc tggtagttcc ttcaaggaag
      241 aacgaatcgg caatcgcgag ttttgcgagc ggcaggaacg gtgaatccgg ataggtattg
      301 atgatcgtcg cgaacaacaa acggccggtg tcgtgacggc ctttgcgaac ttccttcgca
      361 gcctcttcaa acagcacgcg atcgcggccg gcaacggcgg cgcccgtcag gtcggcgtac
      421 ttgtcttcac caccgccgaa cagtccgaac aacttgccct tctttttctt cttcttgtcg
      481 gacgaagcga cggcgccact tccggtgcgg gcgctcgcgg tctgttgcaa accctggtca
      541 acacgcgtgt tcaactcggc aaccgaagtc tcgagccggt cgacgtcagc ggggtcaaat
      601 ttctcggctt tatcgttctt ggtgcggatg tcgttgactt cggaggccag cgaggaaact
      661 tctttctcga gacctttcag ccgcacgacc gggtcatcgg cgttggcttt cttgtccttg
      721 ttttccggca tcgcggccag ggcgctgctc aacgagcggc gcatcgagtc gagtttcgag
      781 ctcatcacgt ccaggcgctg agtggttgaa agctccgtct ggccgctggt tttttggcct
      841 aaaacagatt gggggccaaa aactgcggcg cagaaaagcg ccaggataag caagcgagac
      901 ttcataaaat cgacctccag caacaaaaac tgtttttctt gcgagaaaag agacgttccg
      961 ctatcggatt caatttactc gcgttcggtt tgccacagcg cggttattta taccccagga
     1021 acgttatacc cactgcacgg tggcttcgcg caattcccta acggctgctt ctgcgtcggg
     1081 ttttccaaaa atggccgaac cggccacgat gatctccgct cccgcggcga ctactctttc
     1141 gatgttcgac cgatcgatac cgccgtcgat ctcgatgcgg acattcaact ggcgttcgac
     1201 aatcatctgg cgcaagcgtt tcaccttgtc gagggcttgc gggatgaacg gctggccgcc
     1261 aaagccggga ttgaccgaca tcaccagcac ataatcgacg aactgcaacg cttcttcaac
     1321 cgcgccgacg ggcgtggcgg gattcaacac gacacccggt tgcgcgcccg cggccctgat
     1381 cgccgtcagc gtacgatgca ggtgtacgtc cgcttcgacg tgcaccgaga ccatctgcgc
     1441 gcccgcttcg acaaactgca cggcgtaagt ccccgggtcc gtgatcatca ggtgcgtatc
     1501 gagcggcaag cccgtgaact tagctagcga cttcaccacc ggcagaccga tggtgatgtt
     1561 cggcacgaag tgtccgtcca tgacgtcgac gtgcaggacg ccggcgccgc cgcgttcaac
     1621 ggcctggatc tggtcgccca gacacgagaa gtcagcggac agaatggatg gagctatatc
     1681 gatatttctt tggttgagca ttcactcgcc tcggcaccgc tgaaaaactg tacggcgccg
     1741 gtctggtcct ggtcgggttg ggaaccggtg tcggccgagg agtcaccggt cgtctgttgt
     1801 cattacttcc gggccgca
//
LOCUS       DASWTX010000522         2945 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_6059, whole genome shotgun sequence.
ACCESSION   DASWTX010000522 DASWTX010000000
VERSION     DASWTX010000522.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2945
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6059"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(281..355)
                     /locus_tag="VGD38_07995"
     tRNA            complement(281..355)
                     /locus_tag="VGD38_07995"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(321..323),aa:Asn,seq:gtt)
     gene            641..1330
                     /locus_tag="VGD38_08000"
     CDS             641..1330
                     /locus_tag="VGD38_08000"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HEY0727992.1"
                     /translation="MPLVSYGHAGPPLLMFPTAAADYLEYERFYLVDAIKQFLDAGQL
                     RAYSINSVNRYSLLNEQMPPHLKAELLTRYDRYIVDEVLPLIRNECGDGESRPITTGA
                     SLGAFLSANSYFKHPDLFRGVIAMSGSYDVRAYLKNYYDDNVYFNNPVDYLSNLNDNH
                     YLPLLRKADAIMIMTGQGNYEAPERSRALSDILNSKSIPHVLDVWGADVDHDWPWWRK
                     MLPYALGKLLS"
     gene            complement(1327..>2945)
                     /locus_tag="VGD38_08005"
     CDS             complement(1327..>2945)
                     /locus_tag="VGD38_08005"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HEY0727993.1"
                     /translation="AQGGLSVYTTINVEAQKRAYEVVRAGLRNYDRSHTGWRSAYTMI
                     PTSVNNGEGPATTQELNNYKHPDWYGNDYEAGRHLMGLIMKVDRARNEATVRFGNYTA
                     TLTAAEMGWGKRQPKDEFKNGHLAEFEIKEVDEKNRRLKVELSQIPAVQGAMMTLNAK
                     TGEIVTMVGGYDFYTNKFNNATQAYRQTGSAFKPFIYTAAVEWGMTPETPVSGAPIKI
                     GDWQPHNYDGSLGSGDLPMKTALAKSMNIQAVHLLQTVGIQTGAQMVRRFGIKVPMSP
                     YLPSALGATEVPLDQMVSAYSAFPNKGIRVEPHLIRKVLDRDGATLEEWERTTYKVMN
                     SYVALTMVSMMRGVVTGGTATAANSLPHPVAGKTGTVNDHTDVWFIGYTPTYVTGVWM
                     GYPGKKKPLGNDMTGGKGALPMFVEFMKTYLKDKEKEEFPKAPEMPEDMRELFRQRQR
                     ELAAERAELAAEAEEDEDEGVLPAGTTEPKLEQMTLPPPPKADDTAPANPQPKQEVST
                     PKVDTPPPPVTRPREAEPAKKKGKKGDGEP"
BASE COUNT          623 a          860 c          770 g          692 t
ORIGIN      
        1 ctggcccacc gcaatttgcg ccaacgccag ctccgtattt tcgtaaaccg gtcgaactga
       61 aacacaacat gacgccagcg cgacgataac catcaaaaaa atcaagagtc gagttcgcgt
      121 catgatcagt cactacttgg ctacgaaaaa ggccgccctc aacatggaag gatcaagctc
      181 tcaccgcgac cgttcgccac cgtttgttgt acttgcaata cgaagagctt ggcaaagaaa
      241 aaaggccgcc ggagccgatt ccagcgacct tcgtcctatc tggctccgca ggtaggactc
      301 gaacctacaa cccttcggtt aacagccgaa tgctctgcca ttgagctact gcggaataag
      361 cgccctcaca tagcttttcc aaactatgtg cagggcgcga aggcgttttt ataacaaatg
      421 agtttgggag cgtcaaccgc gcttgcgctc ggccaaaatc tgcgagaata tctcacgccc
      481 taatctactc gcagtaaaag tccgatttac tcggagtaaa aggtccgatt tactcgcggt
      541 aaagtccgat ttcacgggaa aaattcccag attcgcacgc agaaaggtcc ccatgcaacg
      601 acgcacaact tcgtggtaca gccccaacct aaacatggaa atgcccctcg tttcatacgg
      661 acatgcggga ccgccgctgt tgatgtttcc tactgctgcc gccgactatc tcgagtacga
      721 acggttctac ctcgtcgatg ccatcaagca gtttctcgac gccggtcagc taagagctta
      781 ttcaatcaac agcgtcaatc gttacagctt gctcaacgaa cagatgccgc cgcatctcaa
      841 ggccgaactg ctcacgcgct acgatcgcta tatcgtcgac gaagtgttgc cgctgatccg
      901 caatgagtgc ggagatggcg agagtcgtcc aataacgacg ggcgcgagtc tcggagcgtt
      961 tctctccgcg aacagttact tcaaacatcc cgatctgttt cgcggcgtga ttgcgatgag
     1021 tggcagttac gacgtgcgcg cgtatttaaa gaactattac gacgacaacg tctatttcaa
     1081 taaccccgtc gattatcttt ccaacctgaa cgacaatcat tacctgccgc tgctgcgaaa
     1141 ggccgacgcg atcatgatca tgacgggcca gggaaactac gaggctcccg aacgcagtcg
     1201 tgcgctttca gacattctta actcgaaaag cattccgcac gtgctggacg tgtggggagc
     1261 agacgtcgat cacgactggc cgtggtggcg gaagatgctg ccttacgcgt taggaaagtt
     1321 gctcagttaa ggttcgccgt cgcctttctt gcctttcttc tttgctggct cggcttcgcg
     1381 tggacgcgtt acgggtggcg gaggtgtgtc aactttcggc gttgagactt cctgtttggg
     1441 ttgtggattc gcgggcgccg tgtcgtccgc tttcggcgga ggcggcaagg tcatctgctc
     1501 gagcttcggt tctgttgtac cggccggcag tacaccttcg tcttcatctt cttcagcttc
     1561 ggcggccagt tccgcgcgct cagccgcgag ctctcgttga cgttgacgga agagctctcg
     1621 catgtcttca ggcatctcgg gcgccttcgg aaactcttcc ttctccttgt ctttcaaata
     1681 cgtcttcatg aactcgacga acatcggcaa cgcgcccttg ccgcccgtca tgtcgttgcc
     1741 gagtggtttc ttctttccgg gataacccat ccacacgccg gtcacgtaag tcggcgtgta
     1801 accgataaac caaacgtcgg tatgatcgtt aacggtgccc gtcttacccg caaccggatg
     1861 cggcagcgaa ttcgcggctg tcgcagtgcc gccggtaact acgccacgca tcatcgaaac
     1921 catcgtcaac gcgacgtatg agttcatcac tttgtacgtc gttctttccc actcctcgag
     1981 cgtcgcgcca tcgcgatcga gcactttgcg aatcaggtgt ggttcaacac gaatgccttt
     2041 gtttggaaaa gcggaatacg ccgacaccat ttgatcgagc ggaacttcgg tcgcgccaag
     2101 cgccgacgga aggtaaggag acatcggcac cttgatgccg aaacgccgca ccatctgcgc
     2161 gccagtttga atgccaacgg tttgcagcag gtgaaccgcc tgaatgttca ttgacttcgc
     2221 gagcgccgtc ttcatcggca aatcacccga gcccagcgag ccgtcgtagt tgtgcggctg
     2281 ccagtcgccg atcttgatcg gtgctccact cacgggcgtt tccggagtca tgccccactc
     2341 aaccgccgcc gtataaataa aaggcttgaa cgccgaaccg gtttgacgat aagcctgcgt
     2401 cgcgttgttg aatttgttgg tgtagaaatc gtagccgccg accatcgtga cgatctcgcc
     2461 ggtcttggcg ttgagcgtca tcatcgcgcc ctgcaccgcg ggaatctgcg agagctcaac
     2521 tttcaaacga cgattcttct cgtcaacttc cttgatctca aactcggcga gatgtccgtt
     2581 cttgaactcg tctttcggtt gccgtttacc ccaacccatc tcggccgcgg tcaacgtcgc
     2641 ggtgtagttg ccgaaacgca cggttgcttc gttgcgcgcg cgatcgactt tcatgatcag
     2701 gcccatcaag tggcgaccag cttcgtagtc gttaccgtac caatcggggt gtttgtagtt
     2761 attgagctcc tgcgtcgttg ccggtccttc accgttgttg acggaggttg gaatcatcgt
     2821 gtacgcggag cgccagccgg tgtggctgcg atcgtaatta cgcaatccgg cccggaccac
     2881 ttcgtaagca cgcttctggg cttcgacatt gatggtcgtg taaacggaga gtccgccctg
     2941 tgcga
//
LOCUS       DASWTX010000523         1730 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_244602, whole genome shotgun sequence.
ACCESSION   DASWTX010000523 DASWTX010000000
VERSION     DASWTX010000523.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1730
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244602"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            334..1617
                     /locus_tag="VGD38_08010"
     CDS             334..1617
                     /locus_tag="VGD38_08010"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY0727994.1"
                     /translation="MLTVLHISTNDNSGGSGRSAYRVHTGLRDLGVRSRMIVGRKVTD
                     DDDVLPIAPAGFNAAADRFFSRAMGKLSWQYLFFPSSFRLLRHPWFREANIVQLYNTH
                     GNYFSHTVLPLLSRRRPVVWRLSDMWPMTGHCAYSFDCERWRTGCGSCPILSDPPELY
                     RDTTATLWKIKQWSYSHSDLTIVAPSKWIAGLAAESPLLNRFPIHIIPNGLDTTVFAP
                     VPKQAARESLQISPSERVILFSAESLTDRRKGGAHLQAAITRLAETEQNITVLMVGQN
                     GSTIDMPASVRTRTTGRIDDDRALAKIYSAADVFVLPTLAENLPNVALESMACGTPPV
                     IFDVGGCSDAVRHMETGYLARYADAADLARGISLLLNDDKARDRLSRRSREVAVAEYG
                     IELQAKRFLNLYNQVTQKVPVNPVTELQDLQESLD"
BASE COUNT          376 a          496 c          475 g          383 t
ORIGIN      
        1 cattcaaatc ggcggcaacg gactcgtctg caacgcccgc aaacctttgt aaacgccgaa
       61 ggcgttggcg agttcgagcc cagggttgga acaaccctgg gatagatttt gttcctctgt
      121 tgaaacgccg aaggcgttgg cgaagcgcgc cattactctt gccaacactt tcagtgttga
      181 cttcttactg ctgtttactc ccaaggttgt cgcaagctcc aaccttgggc tggaactagc
      241 gaacgccttc ggcgttaggt ccgcctaaaa ctgagccatc tggcctagtt ggttacttga
      301 cttgcccatg tcatctgcga tgaacttcga gacatgctga cggtattgca catcagcacg
      361 aatgataatt cgggcggctc ggggcgctcg gcttatcgtg tgcacacggg gctcagggat
      421 ttgggagtgc gctcgcggat gatcgtgggc cggaaggtca cggacgacga cgacgttctt
      481 ccgatcgcac cggcgggctt caatgcggcg gcggatcgtt tcttcagccg cgcgatggga
      541 aagttaagct ggcagtactt gttctttccg tcgtcgtttc gtttgctgcg ccatccgtgg
      601 ttcagagaag cgaacatcgt tcagctctac aacacacacg gcaattactt ttcacacacc
      661 gtgctgccac tgttgagccg gcggcgtccg gtggtctggc ggctttccga catgtggccg
      721 atgacgggcc attgcgctta ttcgtttgac tgcgaacgtt ggcgaacagg ctgcggctcg
      781 tgtccgattc tttccgatcc gccggagctc tatcgcgaca cgaccgcgac gctgtggaag
      841 atcaaacaat ggtcttattc gcattccgat ctgacgatcg tcgcgccttc gaaatggatc
      901 gcggggctgg cggcggaaag cccgctgctt aatcgatttc cgatccacat aattcccaac
      961 gggctcgata cgacggtctt cgcgccggtt cccaagcaag ccgcacgtga gtctctgcaa
     1021 atcagtccgt ccgaacgtgt gattttgttc agcgcagaat cgcttaccga tcggcgcaaa
     1081 ggcggcgccc acttgcaagc cgccatcact cgtctcgccg aaaccgaaca gaacatcacc
     1141 gtgctgatgg tcggacaaaa cggaagcacg atcgacatgc ccgcttcggt ccgcaccagg
     1201 accaccggca ggatcgacga cgatcgcgcg ctggcaaaaa tctactcggc cgcggacgtg
     1261 tttgtgttac cgacgttggc cgagaacctt cctaacgtcg cactggaaag catggcttgc
     1321 ggcacgcctc cggtgatttt tgatgttggc ggatgcagcg acgccgtgcg tcacatggaa
     1381 accggttacc ttgcgcgcta tgcggacgcg gcagatctcg ctcgcggcat tagtctgtta
     1441 ttgaacgacg acaaagcgcg agatcgcttg agcagacgat cgcgtgaggt tgctgtcgcg
     1501 gaatacggaa tcgaattaca ggcgaaaaga tttctgaacc tctacaacca ggtcacacaa
     1561 aaagttcctg taaaccccgt aactgagtta caggatttac aggaatcatt agactaacaa
     1621 acgaactacg gacagctcgc caaactttgc acgaccaggt tgccgctgtc gtcaatcacc
     1681 aacttcctac agacctgacc attcggagaa cgcaaaacaa ttccctgccc
//
LOCUS       DASWTX010000524         2484 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_116295, whole genome shotgun sequence.
ACCESSION   DASWTX010000524 DASWTX010000000
VERSION     DASWTX010000524.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2484)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2484)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2484
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116295"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..909
                     /locus_tag="VGD38_08015"
     CDS             <1..909
                     /locus_tag="VGD38_08015"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0727995.1"
                     /translation="VGESGCGKSMTALSVMRLIAPPGKIVNGEILFDGKDLLKLSDAE
                     MRQMRGDDIAMIFQDPMTSLNPVFTVGEQIAEALRLHRKMSRKEARQATIDAMREVAI
                     PDPARRVDDYPHQLSGGMRQRVMIAMALACNPKLLIADEPTTALDVTIQAQILELLDD
                     LRKQRDLAVLLITHDLGVVAEVADRVAVMYTGRIVEESPVEELFARPKHPYTEGLLRS
                     VPKLTSEDVIKKERLDTIEGVVPSPTDLPHGCHFAPRCPHRMPRCTAEDIPLYQLDGG
                     VQVRCVLYDLAAAVTADKQDRDFRNQ"
     gene            909..1934
                     /locus_tag="VGD38_08020"
     CDS             909..1934
                     /locus_tag="VGD38_08020"
                     /EC_number="7.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HEY0727996.1"
                     /translation="MQQVQAQEQEGIFSHVRETLVSVRGLVKHFPVEGSDDVVRAVDG
                     VSFDIFAGETLGLVGESGCGKSTVGRCLLRLIEPTSGQIIFEGQDVLSLDKKQLRQLR
                     REMQIIFQDPYASLNPRMKIGDIIAEPLVIHNQGTKSDRRDRVATLLRRVGLDPDYMN
                     RYAHEFSGGQRQRIGVARTLALNPKLIVADEPVSALDVSVQAQVVNLLQELQEEFKLT
                     YLFISHGLAVVEHISTRVAVMYLGRIVEIADAAELYAQPLHPYTQALLSAIPIPDPRQ
                     KRKRIILQGDVPTPINPPSGCRFRTRCPLAIEECAHVDPELREVSPGHHVACIRVPGW
                     AEAPSRF"
     gene            2003..>2484
                     /locus_tag="VGD38_08025"
     CDS             2003..>2484
                     /locus_tag="VGD38_08025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0727997.1"
                     /translation="MSAPQDPGFQMPPPPATPEAEPQAPRPTKQLWPIAIGVFVLGLI
                     FVIGGAVKLLAGGAGTGAALCFFGIVLFALSFIRLPLLPNAEPPMSWFEKMTGIFYEP
                     SRVFRNLKFNPAWIGAFLAIWVLTTIYSTAFIQRITPERIVDHTVEKVSQMGPPFAPP
                     P"
BASE COUNT          500 a          706 c          744 g          534 t
ORIGIN      
        1 gttggcgagt ctgggtgtgg gaagtcgatg acggcgctct ccgtgatgcg actgatcgca
       61 ccacccggaa agatcgtcaa cggcgaaata ctcttcgacg gcaaagacct cctgaaactc
      121 tccgacgccg agatgcgcca gatgcgcggc gatgacatcg ccatgatctt tcaggatccg
      181 atgacgtcgc tcaatccggt ctttactgtc ggcgaacaga ttgccgaggc gctgcggctg
      241 catcgcaaga tgtcgcgcaa agaagcgcgg caagcaacga tcgacgcgat gcgtgaggtc
      301 gcgattcccg atccggcgcg ccgcgtcgac gattatccac accaactctc gggcggcatg
      361 cgccagcgcg tgatgatcgc gatggcgttg gcgtgcaatc cgaagttgtt gattgccgac
      421 gaaccgacga cggcgctcga cgtgacgatt caagcgcaga ttctcgagtt gctggacgac
      481 ctgcgaaagc aacgcgacct cgccgtgctt ttgatcacgc acgatctcgg cgtcgttgcg
      541 gaggtcgcag atcgcgtcgc ggtgatgtac acgggccgca tcgtcgaaga gtcgccggtt
      601 gaagaactgt ttgcgcgtcc gaagcatccg tatactgaag gcttgttgcg ctcggtgccg
      661 aagctcacga gcgaggacgt gatcaagaaa gagcgattgg acacgatcga gggcgtggtt
      721 ccgagtccga cggatttgcc gcacggttgt cacttcgcgc cgcgttgtcc gcatcgaatg
      781 cctcgttgca cggcggaaga tattccgctt tatcagctcg acggtggcgt gcaggtgcgt
      841 tgcgtgcttt atgatttagc ggccgcggta acggcagaca agcaagacag ggattttagg
      901 aatcagtaat gcagcaggtt caagctcagg aacaagaagg gattttttca catgtgcgcg
      961 aaacgcttgt gagtgttcgc gggctggtga agcatttccc ggttgagggt tctgatgacg
     1021 tggtgcgcgc ggtcgatggc gtatcgttcg acatcttcgc gggcgagacg ttgggactcg
     1081 tcggcgaatc cggttgcggt aaatcgacgg tcggacgttg cctgctgcgt ttgatcgagc
     1141 ccacttccgg tcagatcatt tttgaaggtc aggacgtact ctcgctcgac aagaaacagt
     1201 tgcgacaact ccggcgtgag atgcagatca tctttcagga tccttacgct tcgctgaacc
     1261 cgcgcatgaa gatcggcgac atcattgccg agccgctcgt gattcacaac cagggcacga
     1321 aaagcgatcg ccgcgatcgc gtcgcgacgc tgttgcggcg agttgggctc gatcccgatt
     1381 acatgaatcg ttacgcgcac gagttctccg gcggccagcg ccagcgcatc ggcgtcgcac
     1441 gcacactcgc gctcaatccg aagttgatcg ttgccgacga acccgtttcc gcgctcgacg
     1501 tctcggtgca ggcgcaggtc gtcaacctgc tgcaggaact tcaggaagag ttcaaactaa
     1561 cttacctgtt catctcgcac ggtctcgccg tcgtcgaaca catctcgacg cgcgtggctg
     1621 tgatgtattt gggtcgcatt gtcgagatcg cagatgctgc ggagttgtat gcacagccac
     1681 tacatcccta cacgcaggct ctgctctctg cgataccgat tcccgatccg cgtcagaaac
     1741 gcaaacgaat catcctgcag ggcgacgtgc cgacgccgat caatccgccg tcaggttgcc
     1801 gttttcgcac tcgctgtccg ctcgcgatcg aagagtgtgc gcacgtcgat ccggagttgc
     1861 gcgaggtgtc gcccggtcat cacgttgctt gcatacgcgt gcccggctgg gccgaagcgc
     1921 cttcgcgatt ttgaaacatt gattcgaaga atcgcgtatc agtcgagtcc aaaaaatccc
     1981 tctcaatagg agatcgaagc caatgagcgc tccccaggat cctggttttc aaatgccacc
     2041 accgccggca acgcccgaag ctgaaccaca agcgccgcga ccgacaaaac aattatggcc
     2101 catcgcgatt ggtgtgttcg tgttgggact gatatttgtg atcggcggcg ccgtgaaact
     2161 gctggcgggc ggagccggca cgggcgcagc tttgtgtttc ttcggcatcg tactgtttgc
     2221 actgagtttt atccggttgc cgttactgcc gaacgcagag ccgccgatgt cgtggtttga
     2281 gaagatgacg ggaatcttct acgaaccatc gcgtgtgttt cggaacctga agttcaaccc
     2341 ggcatggatc ggcgcttttc tggcgatctg ggtgttgacc acgatctact cgaccgcgtt
     2401 cattcaacgc atcactcccg agcgcatcgt cgatcacacc gtggaaaaag tctcgcagat
     2461 gggaccaccg tttgcgccgc cgcc
//
LOCUS       DASWTX010000525         1921 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_52015, whole genome shotgun sequence.
ACCESSION   DASWTX010000525 DASWTX010000000
VERSION     DASWTX010000525.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1921
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52015"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1856)
                     /locus_tag="VGD38_08030"
     CDS             complement(<1..1856)
                     /locus_tag="VGD38_08030"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEY0727998.1"
                     /translation="MKRAVFFVPVLLLVLASVAAAQTRTYTIDDLLKVRRVGDPQVSP
                     EGRRVAFTIGDVNFDANRVVTQIYVTSIDGGAELKRLTDGQSSSSAPRWSPDGKKIAF
                     TTGGQVWVMDADGGDKEQITKISTGAAGPVWSPDGKWIAFTSDVYPDCKDDACNKKRD
                     EDAEKSKVKAHIVTRLLYKHWDEWRDVKRTHVFVVSSKGGTAREITTGDYDSPPYAAS
                     TGVDYAFSPDSTEIAFLRNPDKVEAISTNSDIYVMNLASGAVKNITQRNRGYDAAPIY
                     TRDGKQIIYRSQATPGFEADRWRVMSYNRVTGLSVELTKGFDLQADSVVLSPDGSTIY
                     FAANDRGKEPVFKMPITGGVPQKVVANVYATNLSITSDGRKLVFASSSIASPAEIYTA
                     NVDGSGLTALTTVNAQAMSRANLKAAEEVEWTGALGRKIHGFIVKPTNFDPSKKYPLA
                     VLIHGGPQSAWNDNWGYRWNPQVFANAGYVVFAPNPRGSTGYGQQFVNEISGDWGGKA
                     YVDIMNGVADVVRRNSFVDRNRIGAAGASYGGYMVNWILGHNNDPRFRFKVLVSHDGV
                     YNLESMYGTTEELWFPEWEFKGTAWSNPAQYTRWSPHKFANNFNTPILIIHG"
BASE COUNT          365 a          560 c          570 g          426 t
ORIGIN      
        1 tcaccgtgaa tgatcaggat cggcgtgttg aagttgtttg caaacttgtg cggcgaccag
       61 cgcgtgtact gcgccgggtt ggaccaagcc gttcctttaa actcccactc cggaaaccac
      121 agctcttcag tcgtgccgta catgctttcg aggttgtaga cgccgtcgtg tgacacgagc
      181 actttgaaac ggaaacgcgg atcgttgttg tgaccgagaa tccagttgac catgtagccg
      241 ccgtaactcg cgccggctgc gccgatgcgg ttgcgatcga caaacgagtt gcgccgcacg
      301 acgtcggcca cgccgttcat gatgtcgacg tatgctttgc cgccccagtc gccgctgatc
      361 tcgttgacaa actgttggcc gtagcctgtc gagccgcgag ggtttggcgc aaacacgacg
      421 taaccggcat tcgcaaacac ttgcgggttc cagcgatagc cccagttgtc gttccacgcg
      481 ctctgtggac caccgtgaat cagcaccgcg agcgggtatt tcttgctggg atcgaagttt
      541 gtcggcttga cgatgaagcc gtgaatcttg cgtccgagcg cgccggtcca ttcgacttct
      601 tccgccgctt tcaggttcgc gcggctcatc gcctgcgcgt tgacggtcgt caaggcagtc
      661 agaccactgc cgtcgacgtt agctgtgtag atctcagccg gagacgcgat cgagctcgac
      721 gcgaagacaa gcttgcgtcc gtcggaagtg attgagaggt tggtcgcgta aacgtttgcg
      781 accactttct gcggcacgcc gcccgtaatc ggcattttga agacgggttc tttgccgcgg
      841 tcgttcgccg cgaaatagat cgtgcttcca tcaggcgaca ggaccacgct gtccgcctgc
      901 aggtcaaaac ctttcgttaa ctcaacgctc agaccggtca cgcggttgta agacatcaca
      961 cgccagcgat cggcttcgaa gcccggcgtg gcctgcgagc ggtagatgat ctgtttgccg
     1021 tcgcgtgtgt agatcggagc cgcatcgtaa ccacggtttc gttgcgtgat gtttttgact
     1081 gcgcccgacg cgagattcat cacgtagatg tcgctgttgg tcgagatcgc ttcaaccttg
     1141 tcgggattgc gcaggaaagc gatctcggtc gaatcaggcg agaaagcgta gtcgactccg
     1201 gtcgaggcgg cgtacggcgg cgaatcataa tcgcctgtcg tgatctcgcg cgcggttccg
     1261 cctttgctcg aaacaacgaa aacgtgcgtg cgcttcacat cgcgccactc gtcccagtgt
     1321 ttgtagagca ggcgagtgac gatgtgcgct tttactttgc tcttctcggc gtcttcgtcg
     1381 cgtttcttgt tgcacgcgtc atccttgcag tcgggataaa catcggacgt gaacgcgatc
     1441 cactttccat caggcgacca aaccggcccc gcggcgccgg tggagatctt cgtgatctgt
     1501 tctttgtcac cgccgtcggc gtccatcacc caaacctggc cgccggtcgt gaaagcgatc
     1561 ttcttgccgt cgggcgacca gcgcggcgcg ctcgacgagc tctggccgtc agttaaccgc
     1621 ttcaactcgg cgccgccatc gatcgacgtc acgtagattt gcgtcacgac gcggttggcg
     1681 tcgaagttga cgtcgccgat cgtgaaagcc acgcggcggc cctcaggcga gacctgcgga
     1741 tcgccgacgc gtcgcacctt caatagatcg tcgatcgtgt aggtgcgggt ttgggccgcg
     1801 gccacggatg ccaggacgag cagtaggaca ggaacaaaga aaacagcacg cttcatgatc
     1861 ttcctcagaa aaaatggatt ttgaaccagg gaaagcgtgg gtattattgc acaatgaccc
     1921 g
//
LOCUS       DASWTX010000526         2081 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_158805, whole genome shotgun sequence.
ACCESSION   DASWTX010000526 DASWTX010000000
VERSION     DASWTX010000526.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2081
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158805"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            341..970
                     /locus_tag="VGD38_08035"
     CDS             341..970
                     /locus_tag="VGD38_08035"
                     /inference="COORDINATES: protein motif:HMM:NF014724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HEY0727999.1"
                     /translation="MLTVKSRRTLIKIALVCILIWPFVAWGAARVLIVEAPLAKADAI
                     VVLGGSANYKERAREAARLLREGRAPVILLTNDNQRGPWSSAEQRNLYFYERALEEIH
                     NAGAPDQSVDVLMNEVGSTYEEAELVKQYAADHGFRSVLVVTSAYHSRRALWTFSRVF
                     RDTGIQVGLTPAPRGSESPPPATWWLTRRGWRLVPTEYVKMIYYVLKYR"
     gene            978..1832
                     /locus_tag="VGD38_08040"
     CDS             978..1832
                     /locus_tag="VGD38_08040"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY0728000.1"
                     /translation="MMDANAAEIARGERFEFGQNWSQFLPDINEERIQQAEKSLREML
                     EVDSLSGKTFLDIGSGSGLFSLAARRLGARVHSFDFDPKSVYCTTELRKNHFRDDEAW
                     KVQEASVLDPEFMKSLGQYDIVYSWGVLHHTGDLWTAMEHAQQRVAPGGKLFIALYND
                     TGSQSARWVWIKKTYCGLPGILRTPFAALVWLPNELKLLAKSVLTLNPKLYTDSWTQY
                     RDNRGMTKWRDIIDWVGGYPYEVSTPDEVFDFCRERGFLLTKLMCGRVGLGCNQFVFV
                     KSNRLSDA"
     gene            1844..>2081
                     /locus_tag="VGD38_08045"
     CDS             1844..>2081
                     /locus_tag="VGD38_08045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728001.1"
                     /translation="MSKSVLKLLLVVAVLAVVGIGVVFALRQVRGTYTETWEAGKRTI
                     TVGPKDSFQAALNAAQYGDVIVLQAGVAYVGSFEL"
BASE COUNT          420 a          527 c          687 g          447 t
ORIGIN      
        1 tacaatggac ggggtttcga ggatcaatcc caccgacgga gtcggtggta gttcataccc
       61 agcctacacg aggcggtcgg gaggtaccaa tcccaccgaa cgaagtcggt ggatagttca
      121 tacttgctcg gtgcgattat aaaggttgta tatgaagcac caccgactgc gtcggtggga
      181 ttgttcgtag cggtgggtgt tggtaggtag ggtattaacc ggaccaccga ctgcgtcggt
      241 gggattgttc gatgaggtcg gtgttggtag gtagggtatt aaggaaacca ccgactgtgt
      301 cggtgggata cgcactgtga ggtcgcgccg ccgcggtggg atgcttactg tgaaatcgcg
      361 ccgcacgctt atcaagatcg cgcttgtttg catcttgatt tggccgtttg tggcgtgggg
      421 cgcggcgagg gttttgatag tggaggcgcc gctcgcaaaa gcggacgcca ttgtcgtact
      481 gggtggctcg gcgaattaca aggaacgcgc gcgtgaggcg gcgcggctcc tgcgcgaagg
      541 acgcgccccc gtcatcctgc tgaccaacga caaccagcgt ggtccatggt ccagcgccga
      601 gcagcgaaac ttgtactttt acgagcgcgc gctcgaggag attcacaacg caggcgcgcc
      661 ggaccaaagc gttgacgtgc taatgaacga ggtcggcagc acgtacgaag aagcggagtt
      721 ggtaaagcaa tacgcggccg atcacggttt tcgttctgtt ctggtcgtca cctccgcgta
      781 tcactcccgc cgagcgcttt ggacgttctc gcgcgtgttt cgcgacacgg gcattcaagt
      841 cggcctgacg ccggcgcctc gcggaagcga atcgccgccg cccgcaacgt ggtggctgac
      901 cagacgcggc tggagattgg tgccgaccga gtatgtgaag atgatctact acgtgcttaa
      961 atacaggtga gaatttaatg atggacgcca acgccgcaga aatagcccgg ggagagcgat
     1021 tcgagtttgg ccagaactgg tcgcagtttc tgcccgacat caacgaggag cgcattcagc
     1081 aggcggagaa gtcgctccgc gagatgctgg aagtcgactc gctgagcggg aagacgtttc
     1141 tcgacatcgg ctccggcagc gggttgttca gcctggcggc gcgccggctt ggcgctcgtg
     1201 ttcattcatt cgacttcgat ccgaaatcgg tctattgcac gacggagctc aggaagaacc
     1261 actttcgcga cgacgaggcg tggaaggttc aggaggcttc ggtgctcgac cctgagttta
     1321 tgaagtcgct cggccaatac gacatcgttt actcgtgggg tgtgttgcat cacacgggcg
     1381 atctttggac cgcgatggag catgcgcaac agcgtgtcgc gcccggagga aagcttttca
     1441 tcgcgcttta caacgacacc ggcagccaga gcgcacgctg ggtttggatc aagaaaacgt
     1501 actgcggcct gccagggatt ttgaggacgc cgttcgcggc gctggtgtgg cttccgaacg
     1561 aactaaagct gttagcaaaa tccgtgttga cgctcaatcc gaagctctac actgattcgt
     1621 ggacgcagta ccgggacaac cgcggcatga cgaagtggcg cgacatcatc gattgggtcg
     1681 gcggataccc gtacgaggtt tcgacgccgg atgaagtttt cgacttctgc cgcgaacgcg
     1741 gttttctgtt aacgaaattg atgtgcggcc gcgttggttt gggatgtaat cagtttgtgt
     1801 tcgtgaagag caaccggctc agcgacgcgt gaaagtgttg gcaatgagta agtctgtttt
     1861 gaaactgttg ttggtggtcg cggtgttggc cgtcgtcggg atcggcgtgg tcttcgcgct
     1921 gaggcaggtt cgcgggacgt acacggaaac ctgggaagcg ggcaagcgca cgatcacggt
     1981 tggaccaaaa gacagttttc aggcagcgct caacgcagcg cagtacggcg atgtgatcgt
     2041 gcttcaggca ggcgttgctt acgtcggcag cttcgagttg c
//
LOCUS       DASWTX010000527         2704 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_201186, whole genome shotgun sequence.
ACCESSION   DASWTX010000527 DASWTX010000000
VERSION     DASWTX010000527.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2704
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201186"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(13..1077)
                     /gene="dusB"
                     /locus_tag="VGD38_08050"
     CDS             complement(13..1077)
                     /gene="dusB"
                     /locus_tag="VGD38_08050"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HEY0728002.1"
                     /translation="MPEIKPFKIRDVEINPPLILSPMAGVTDVSFRRLIKRRGGVGLS
                     VSEFISVEGLTRSNPKSKRQMRFYEDERPFAVQIFGGQPERMAMAAEMAQEVGADILD
                     INCGCPAPKVVKHGGGSGLLKDHPRLETILKAVRKVVTIPLTVKIRAGFYDHTINAVE
                     TAKLAEDCGVEHIALHGRTKEQGYRGLANWDLVRQIKEVVRVPVSGSGDVTTIEGAFA
                     KFRETGCDGVLIGRGAMANPWIFRQIEDAMHGREIFEPTLADKRAILHEYFDMLREDM
                     PETPAINRMKQLAGQFTRGLQGGALFRTSIYHSHSVEEVLDRIEEYFSAILEGRPYYG
                     EAGAPIEEAPALDSCEAAMV"
     gene            complement(1077..1616)
                     /locus_tag="VGD38_08055"
     CDS             complement(1077..1616)
                     /locus_tag="VGD38_08055"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HEY0728003.1"
                     /translation="MTPATLITAFLLVCVAGVSLSPQSPITDPHIVVYKGARKLELYS
                     GKNLLRTYRVGLGFSPVADKKREGDGATPEGEFYVFVKNSKSAYYLSLGISYPNAEDA
                     ARGLRDGLITKAQHDAIVDAIKKKKAPPQYTKLGGLIYIHGHGASSDWTWGCVALENS
                     DMKELYDGVSVGTPVTIKP"
     gene            complement(1622..>2704)
                     /locus_tag="VGD38_08060"
     CDS             complement(1622..>2704)
                     /locus_tag="VGD38_08060"
                     /inference="COORDINATES: protein motif:HMM:NF025010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEY0728004.1"
                     /translation="FALITLLLVFTGNVFAQEGEMQVVDEVIAQVNDEVITLSMLKRE
                     TEARVEAFIQSGMSEQKAREEVNKRQAELIATLINEKLLLQKGKELDLAGEIEAEVNR
                     RMLQIAQEQGINSIEKLYQAMRDSKLDPDEVRRTMRTEMMKQAVLQAEVDRRVYLGFS
                     SDEIKKYYDSHLDKFRKPESVKLSELYLVTTGKDEAAVKARALELIAQIRAGADFAAL
                     AAANSEREKNGQRTAPQDKGYVGEFDVPQLREDLVAAIKNVPAGGVTEPIRTPEGWQI
                     LRIDARTPPGSTPTFNENRVREAMLMERQPKEREAYLENLRNEAFIKITDTYRASVEP
                     LLKLKQPATAKSADKTDDKKKDKKSN"
BASE COUNT          498 a          882 c          710 g          614 t
ORIGIN      
        1 aggaactaaa ggctaaacca tcgcggcttc gcacgaatcg agcgccggcg cttcttcgat
       61 aggcgcgccg gcctcgccgt aatacggacg cccttcgaga atcgcactga agtactcctc
      121 gatccgatcg agcacttctt caactgagtg cgaatgataa atcgacgtgc ggaacaacgc
      181 gccgccctgc aagccgcgcg taaactgtcc cgctaactgc ttcatgcgat tgatcgcggg
      241 cgtctccggc atgtcttcgc gcagcatgtc gaagtactcg tgcaggatcg cgcgcttgtc
      301 cgcgagcgtc ggctcgaaga tctcgcgccc gtgcatcgcg tcttcgatct gccggaagat
      361 ccacggattc gccatcgcgc cacgcccgat cagcacaccg tcacaaccag tctcacgaaa
      421 cttcgcaaac gcgccttcga tcgtcgtcac gtcaccacta cccgaaaccg gcacgcgcac
      481 gacctctttt atctgccgca ccaaatccca attcgcaagc ccacgatagc cctgctcctt
      541 cgtgcgcccg tgcaaagcga tgtgctcgac accacaatct tccgcgagct tcgccgtttc
      601 gactgcattg atcgtgtggt cgtaaaaccc cgcgcggatc ttcaccgtca acggaatcgt
      661 caccactttc ctcacggctt tcagaatcgt ctccagccgc ggatgatcct tcagcaaacc
      721 cgatccgccg ccatgcttca cgaccttcgg cgcgggacat ccgcaattga tgtcgagaat
      781 atcggcgccc acttcctgcg ccatctccgc cgccatcgcc atgcgctctg gctggccgcc
      841 aaaaatctgc accgcaaacg gccgctcatc ttcgtaaaac cgcatctgcc gtttcgactt
      901 cggattgctg cgcgtcaatc cttcaacgga aatgaactcc gaaaccgaca aacccacgcc
      961 gccgcgccgc ttgatcaaac gccggaaaga cacgtccgtc acacccgcca tcggtgaaag
     1021 aatcagcggc gggttgatct cgacgtcacg aatcttgaac ggcttgattt ccggcatcac
     1081 ggttttatcg ttactggcgt tccgacgctc accccgtcgt acagctcctt catgtcactg
     1141 ttctcgagcg ccacgcagcc ccacgtccaa tcgctgctcg cgccgtgacc atgaatatag
     1201 atcaggccgc cgagtttcgt gtattgcggc ggcgcctttt tctttttgat cgcgtccacg
     1261 atcgcatcgt gctgcgcctt cgtgatcagc ccatcgcgca acccacgcgc ggcgtcttcg
     1321 gcgttcggat aactgattcc cagcgagagg taataggcgc tcttgctgtt cttgacgaac
     1381 acgtaaaact cgccttcggg cgtcgcgccg tcgccctcgc gtttcttgtc ggccaccgga
     1441 ctgaaaccga gtccgacacg atacgtgcgc agcaggttct taccggagta aagctccagt
     1501 ttgcgcgcgc ctttgtaaac gacgatgtgc ggatcggtga ttggactttg cggcgacaaa
     1561 ctaacaccgg cgacacaaac cagcaggaaa gcggtgatga gtgtcgccgg tgtcaattag
     1621 tttagttcga cttcttgtct ttcttcttgt cgtcggtctt gtcagcgctc ttggcggtcg
     1681 ccggctgctt gagtttcagc aacggctcga cgcttgcgcg gtacgtgtcc gtgatcttga
     1741 tgaacgcctc gttgcgcagg ttctccaaat aagcctcacg ctccttcggc tgccgttcca
     1801 tcaacatcgc ctcgcgcacg cggttttcgt tgaacgtcgg cgtgcttccg ggaggcgtgc
     1861 gcgcgtcgat gcgcagaatc tgccaaccct cgggcgtgcg aatcggttcg gtgacgccgc
     1921 cggcgggcac gttcttgatg gccgcaacca gatcctcgcg cagttgcgga acgtcaaact
     1981 caccaacgta gcccttgtcc tgcggcgcgg tgcgctgtcc attcttttcg cgttcggagt
     2041 ttgcggccgc aagcgcggcg aagtcggcgc ccgcgcggat ctgcgcgatc agttccaagg
     2101 ctcgcgcctt caccgctgct tcatccttgc cggtcgtgac gagatagagc tccgacagtt
     2161 tcacgctttc cggtttgcga aacttgtcga ggtgcgagtc atagtatttc ttaatctcat
     2221 cagacgagaa gccgagataa acgcggcgat ccacttccgc ctgcaacacc gcctgcttca
     2281 tcatctcggt gcgcatcgtg cggcggactt catccgggtc cagcttgctg tcgcgcatcg
     2341 cctggtagag tttttcgatc gagttgattc cctgctcctg cgcgatctgc aacatgcggc
     2401 ggttcacttc cgcttcgatc tcgccggcca gatcgagctc tttgcctttc tggagcaaaa
     2461 gcttctcgtt gatcagcgtg gcgatcagtt cggcctgacg cttgttgact tcctcgcgcg
     2521 ccttttgctc ggacatgccg ctttgtatga acgcttcaac gcgcgcttcg gtctcgcgct
     2581 tcaacatcga cagcgtgatg acttcgtcgt tgacctgggc gatgacttcg tcgacgacct
     2641 gcatctcgcc ttcctgcgcg aagacgttgc cggtaaagac cagcaaaaga gttatgagtg
     2701 cgaa
//
LOCUS       DASWTX010000528         2216 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_73076, whole genome shotgun sequence.
ACCESSION   DASWTX010000528 DASWTX010000000
VERSION     DASWTX010000528.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2216
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73076"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..794)
                     /locus_tag="VGD38_08065"
     CDS             complement(<1..794)
                     /locus_tag="VGD38_08065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728005.1"
                     /translation="MIDFVSLLPITVAIFIAVIVFLVVLNRIFVNVGAREIAIKERRY
                     IGAKMPPGRVVATEGEVGIQADVLKPGLHLIKFPFERVVRKVPLIEIGPDELGVIEAV
                     DGEPMPPGRIFAPDRAQNAHNNFQDPIAFIKQGGVKGIQLRTLPPGLWPTHPYLFRVS
                     VAKATVVPQGKVGVITAADGDPLDPGRLLGKAITKHHNFQDGEQFIAAGGQKGPQVDI
                     LTPGVYRILTQSGPIDGANETKPGLFTVRLFDATVINENNIGLVEAL"
     gene            complement(787..1320)
                     /locus_tag="VGD38_08070"
     CDS             complement(787..1320)
                     /locus_tag="VGD38_08070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728006.1"
                     /translation="MVILIFSSILAFGLIAIAIYFWQKPAKTSETIELPPPPSQLGSL
                     FASADAAQLAEPNEAREPEPFADAENAGSKRLPHELIESWRESPDRVSTTRLLHAAAL
                     SDSADTYRNAIELVLDVWHKQGISEMSAAELQTLFNSEFWILSPAARTSGAGFVLKRT
                     LSQAKRDLEKETHHAND"
     gene            complement(1429..>2216)
                     /locus_tag="VGD38_08075"
     CDS             complement(1429..>2216)
                     /locus_tag="VGD38_08075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728007.1"
                     /translation="STARKTDTAAPGTHLRALYRSSVPAYDEGWTRWIFDTVGIPFAT
                     LTDKDLRTGAITYKPSPGVTIKYPAIVIPDQPARTLLEGYRAGTMPPEVSGGLGEQGV
                     KTLREFVEGGGTLIFVNRASNLAIQQFKLPVLNVVAGLPRTEFYVPGSILRIELDTSH
                     PIANGMPKETIAWAEDSPVFQVSDVAGASVPAANARIIASYPADKNPLLSGWLLGAEK
                     LKGKAALVEVKMGEGRIILFGFRPQYRAQSWATFPLFFNALNR"
BASE COUNT          445 a          599 c          681 g          491 t
ORIGIN      
        1 agagcttcca cgagaccgat gttgttttcg ttgattacgg tcgcgtcaaa tagtcgcacg
       61 gtgaacagtc cgggcttggt ttcgttcgcg ccgtcgatcg ggcctgattg agtcaggatg
      121 cgataaacgc cgggcgtgag aatgtctacc tgcggacctt tctggccacc cgcggcgatg
      181 aactgttccc catcctggaa gttgtgatgt ttggtgatcg ccttgcccag caagcggccc
      241 ggatcgagtg gatcgccgtc ggcggctgtg atgacgccga ccttaccttg cggcacgacc
      301 gtcgctttcg ccacggaaac gcggaacagg tacggatggg tgggccagag gcccggcggc
      361 agtgtgcgca actggatacc cttcacgccg ccctgtttga taaacgcgat cgggtcctgg
      421 aagttgttgt gtgcgttctg cgcgcgatcg ggcgcgaaga tgcgtcccgg cggcatcggc
      481 tcaccgtcaa cggcttcgat cacgccgagt tcgtctgggc caatctcgat cagcggcact
      541 ttgcgcacga ctcgttcgaa aggaaacttg atcaggtgga gtccgggctt gagtacgtcc
      601 gcctgaatgc cgacttcacc ttctgtagcg acgacgcgtc ccggcggcat cttcgcgccg
      661 atgtagcgcc tttccttgat cgcgatttcg cgcgcgccga cgttgacgaa gatgcggttg
      721 agaaccacaa ggaaaacaat cacggcaatg aagatggcaa ccgtgatcgg taacaacgaa
      781 acaaagtcaa tcatttgcat ggtgtgtttc tttctcgagg tcacgcttcg cttgagagag
      841 cgtgcgtttc agaacaaagc cggcgccgga agtgcgggcg gccggcgaca agatccagaa
      901 ttcactgttg aatagcgtct gcagctccgc ggcagacatc tccgagatcc cttgtttgtg
      961 ccagacgtcg agtaccagct cgattgcatt gcggtacgtg tctgcactgt cagagagtgc
     1021 cgcggcgtgt agcagccgtg ttgtggaaac tctgtccggg gattcacgcc acgattcgat
     1081 cagctcgtgt ggtaaccgtt tgctgccggc gttctcggca tccgcaaacg gctcaggttc
     1141 tcgagcttcg ttgggttctg cgagttgtgc ggcgtccgcg ctggcaaaca agctgcccag
     1201 ttgtgacggc ggcggcggga gctcgatagt ttccgatgtt ttcgcgggtt tctgccagaa
     1261 gtaaatggcg atagcgatta agccgaaggc taaaatcgaa ctgaagataa gaatgaccat
     1321 tgcagccggt aacgaccgct taagtttcga ttggccgtta ccgcgtaatt ggtctatacg
     1381 cgcgtcggga gcaaaagttc aaaacatagg atcggtcaga cgtgcatgct agcgattcag
     1441 ggcgttgaag aacagtggga acgtggccca cgattgcgcg cggtattggg ggcggaagcc
     1501 gaagaggatg atgcggcctt cgcccatttt gacttcgacc agggcggctt tgcctttcag
     1561 cttttctgct ccgagaagcc agccggagag tagcggattt ttgtccgccg ggtatgacgc
     1621 gatgatgcgc gcgtttgctg ctggaacact cgcgcccgca acgtctgaga cttgaaacac
     1681 cggcgagtct tcggcccacg cgatcgtttc tttaggcatt ccattcgcga tcggatgcga
     1741 cgtgtcgagc tcgatgcgca ggatcgatcc gggaacatag aactcagtgc gcggcaggcc
     1801 ggcgacaacg ttgagcaccg gtaatttgaa ctgctggatc gcgaggttgg aagcacggtt
     1861 cacaaagatc agtgtgccgc cgccttctac aaactcacgc aacgtcttca cgccttgttc
     1921 gcccaggcca cccgaaactt caggcggcat tgttcccgca cgataacctt cgagtaacgt
     1981 gcgcgccggc tgatcgggaa tcacgatcgc gggatacttg attgttacgc cgggcgaagg
     2041 tttgtaagtg atggcgcctg tgcgcagatc tttatcggtg agagtggcaa aaggaatccc
     2101 cacggtgtcg aaaatccatc tggtccaacc ctcatcgtaa gccggtactg acgaacgata
     2161 aagcgcacgc aagtgtgtgc cgggtgccgc agtgtccgtt tttctcgccg tgctga
//
LOCUS       DASWTX010000529         2542 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_356832, whole genome shotgun sequence.
ACCESSION   DASWTX010000529 DASWTX010000000
VERSION     DASWTX010000529.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2542
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_356832"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..410
                     /locus_tag="VGD38_08080"
     CDS             <1..410
                     /locus_tag="VGD38_08080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728008.1"
                     /translation="IFVQWVQIYQLSTESLRSVLATYQKVFPHVLVFRVGGSSRGKDL
                     LLMGSNQPLNLDRLSERLADPRVQKELARVNLSNEADVRSWFVCDETKLGPAVAGARI
                     NTDDNMHIETTVPREAFRPLMQTNAEWVQALAK"
     gene            complement(392..1795)
                     /gene="hemG"
                     /locus_tag="VGD38_08085"
     CDS             complement(392..1795)
                     /gene="hemG"
                     /locus_tag="VGD38_08085"
                     /EC_number="1.3.3.4"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004729 - oxygen-dependent
                     protoporphyrinogen oxidase activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase"
                     /protein_id="HEY0728009.1"
                     /translation="MTVRRVVVIGGGISGLAAAHRLAELNPSLHLTLIEASARLGGTL
                     LTDQRDGFLLERGPDSFITEKPEAIALAKRLGIESRLIETNTNHRRSFIVRNGRLRPV
                     PEGFQLLAPSRIWPFITSDIFSLAGKARMAADLFLPRKNKNGVADESLATFVRRRLGR
                     EALERMAQPMVGGIYTADPETLSLRATLPRFLDMERDHGSLILAMLRKARGQSGTSGA
                     RYGLFLSFDEGMGVLVETLKQKLTKCEIKLNTKVTAIERGRGWKLRTDKEEPINAEGI
                     CLAVPAYVAGQLLTSVEQNLAAQLNAIKYASTATINLAFPRSAIKHPLDGFGFVVPFV
                     EKRSLIACTFSSVKFPGRAPGDHVLLRVFVGGALQPEMFALEESEMLARVERDLRELL
                     KIESPPLFTEVSKWQNSMPQYEVGHLDRIAAIENSVRELPGLTLAGNAYRGAGIPDCI
                     RSGETAAESIHNYLASA"
     gene            complement(1792..>2542)
                     /gene="hemH"
                     /locus_tag="VGD38_08090"
     CDS             complement(1792..>2542)
                     /gene="hemH"
                     /locus_tag="VGD38_08090"
                     /inference="COORDINATES: protein motif:HMM:NF012964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HEY0728010.1"
                     /translation="NRNWQPLLPDALRQMADDGVQNALAFVTSAYSSYSSCRQYRENI
                     ANAQAAVGAEAPRVDKLRAFYNHPLFVEANVEHIRDAWSRLDGDEQTQLVFTAHSIPE
                     TMAANCDYAAQLQEAGSLIAGALGIESWRVVYQSRSGSPMQPWLGPDIGDYLRELKAQ
                     GIESAVVAPIGFVSDHMEIIYDLDFEAQNLARELGIQMVRAATAGTHPAFVKMIRELI
                     LERVHNEPRRFLGSRGPVHDVCPADCCLLVR"
BASE COUNT          530 a          722 c          754 g          536 t
ORIGIN      
        1 ggatttttgt gcagtgggtg cagatctacc agttgtcgac ggagagtttg cgttcagtgc
       61 tggcgactta tcagaaagtg tttccgcacg tgctcgtgtt tcgggtcggc ggatcgagcc
      121 gtgggaagga tctgctgctg atgggcagca accagccatt gaatctcgat cgtttgtcgg
      181 agcgactggc ggatccgcgc gtgcagaaag agcttgcgcg agtgaatctc agcaatgaag
      241 cagacgtgcg atcgtggttt gtgtgtgacg agacgaagct cgggccggcg gtagcgggag
      301 cgcgcatcaa cacggacgac aacatgcaca tcgagacgac cgtgccgcgc gaggcgtttc
      361 ggccgttgat gcagacgaat gcggagtggg ttcaggcgct ggctaagtag ttgtgaatgg
      421 attcggcggc ggtttcgccg ctgcgaatgc aatccgggat acccgcgccg cgataggcgt
      481 tgccggcgag tgtgaggccg ggtagttcgc gcacgctgtt ttcgatcgcg gctatgcgat
      541 cgaggtgacc gacttcgtac tggggcatcg agttttgcca cttggacact tctgtaaaaa
      601 gcggtggcga ttcgatcttt aacaattcgc gtaaatccct ctccacacgc gccagcatct
      661 ctgactcctc aagcgcaaac atctccggct gcaacgcgcc gccgacgaac acgcgcaaca
      721 gcacgtgatc accgggcgcg cgtcccggaa acttcacgct gctgaacgtg cacgcgatca
      781 gcgagcgttt ctcgacgaaa ggcacgacaa aaccaaagcc gtcgagcggg tgtttgatcg
      841 cgctgcgtgg aaaagcgaga ttgatcgtgg cggtggaagc gtacttaatc gcgttcagtt
      901 gagcggcgag gttttgctcc acactcgtga gcagttgtcc tgcgacgtac gctggcacag
      961 ccagacagat cccctccgcg tttatcggtt cttctttatc ggttcttaat ttccaccccc
     1021 ggccgcgttc gattgcggtc accttcgtgt tcagcttgat ctcgcactta gtaagttttt
     1081 gctttagcgt ttcgaccaaa acacccatgc cttcgtcgaa cgagagaaac aagccataac
     1141 gcgcaccact agttccactc tgcccacgtg ccttgcgcaa catcgcaaga atcaaactgc
     1201 catggtcccg ttccatatcg agaaaccgcg gcagcgtcgc gcgcaagctc agcgtctccg
     1261 gatcggcggt gtagatgccg ccgaccatcg gttgggccat gcgctcgagg gcttcacggc
     1321 ctaatcggcg ccgtacgaac gttgcgagcg attcatccgc cacaccgttt ttattttttc
     1381 gcggcagaaa cagatcggcg gccatgcgtg cttttccagc aagactaaaa atgtcgctgg
     1441 taatgaacgg ccagatgcgc gacggcgcga gcagttgaaa accttcagga acgggccgca
     1501 accggccgtt gcgaacgatg aagctgcgcc ggtgattggt attcgtttcg atgaggcggg
     1561 attcgatccc gagacgtttt gcgagtgcga ttgcttcggg tttctcggtg atgaaagaat
     1621 ccggaccgcg ttcgagaagg aaaccgtcgc gctgatccgt gagtagcgtg ccgcccagcc
     1681 gagcggaggc ttcgattaaa gtcagatgta aagagggatt tagttcagcg agacggtgtg
     1741 cggctgcaag accggagata ccaccgccga tgacgactac acggcgcacg gtcacctcac
     1801 gagcagacag cagtccgcgg gacaaacatc atgaacgggc ccacgcgagc cgagaaaacg
     1861 acgcggttcg ttatgaacgc gttcgagtat gagttcacga atcattttca cgaaggcggg
     1921 atgggttccg gcggttgcgg ctcggaccat ttgaattccc agttcgcgcg cgaggttctg
     1981 cgcttcgaag tcgaggtcgt aaatgatctc catgtggtcc gacacgaaac cgatcggagc
     2041 cacgactgcg ctctcgattc cttgcgcttt gagctcgcgt agataatcgc caatgtcagg
     2101 ccccaaccac ggctgcatcg gcgagccgct gcggctttga taaaccactc gccagctctc
     2161 gatccccaat gcgcccgcga ttaagctgcc cgcttcctga agctgcgccg cgtagtcaca
     2221 gttcgcagcc atcgtttccg gaatactgtg cgccgtgaaa acaagctgcg tctgctcgtc
     2281 accatcgagc ctggaccacg catcgcgaat gtgttcgacg ttcgcttcga caaacaacgg
     2341 atgattgtaa aacgcgcgca acttatcaac gcgcggcgct tccgcgccaa ctgccgcctg
     2401 cgcgttcgcg atgttctcgc ggtactgccg gcaactcgaa tacgaactgt aagccgacgt
     2461 tacaaaagcc agcgcgtttt gcacgccgtc gtctgccatc tgccgcaacg catcaggcag
     2521 gagtggctgc cagttgcgat tg
//
LOCUS       DASWTX010000530         3042 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_30244, whole genome shotgun sequence.
ACCESSION   DASWTX010000530 DASWTX010000000
VERSION     DASWTX010000530.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3042
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30244"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..329
                     /locus_tag="VGD38_08095"
     CDS             <1..329
                     /locus_tag="VGD38_08095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728011.1"
                     /translation="TFMAYTYEQLKHMTLAELREIAKGGEQEVVQGYTQMNKEHLVGA
                     LAKALGIQHTPHDVVGIDKSSIKARIRELKTQRAAAIEAHDHAQLKTVRRTIHRLKRQ
                     IHKATV"
     gene            393..866
                     /locus_tag="VGD38_08100"
     CDS             393..866
                     /locus_tag="VGD38_08100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017953226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEY0728012.1"
                     /translation="MIKAINLSVNGVSRDDEVEPRMLLVHYLRDVVGLTGTHVGCETS
                     LCGACTVSVDGQAVKSCTMFAVQADGASITTVEGLATNGQLHPVQEGFWERHGLQCGY
                     CTPGMIMTAAQLLERNANPSREEICHGLEGNLCRCTGYQHIIEAVEYAAKKAAGS"
     gene            901..>3042
                     /locus_tag="VGD38_08105"
     CDS             901..>3042
                     /locus_tag="VGD38_08105"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein
                     molybdopterin-binding subunit"
                     /protein_id="HEY0728013.1"
                     /translation="MPNSYVGQRVKRTEDPRLIKGLAHYVDDISLPGTLHVAFVRSVY
                     AHAKITNIDTSAALAKPGVVAVYTGQDVAQKVGPVPCAGALPGLKVPDHRVLAGEKVY
                     FVGHPIAAVVAIDRYAARDAADLIIVDYEDLPVVTDVEQAAAGGTVIHESFGDNIAYK
                     MTAGEGDIDAAFASAERTVKQRILHRRLAPIAMEPRGVLARYFPGEEELTLWSSTQIP
                     HLMRTQVALMIGLPENKLRVITPEVGGGFGSKLNVYSEEALLGWISMQLHKPVKWIET
                     RRENIQATIHGRGQVGDIEVAFKNDGTLLGLRYNVFADLGAYHQLLTPAIPTLTGLML
                     SGAYRIPAIQINITGCFTNKMATDAYRGAGRPEATYVVERALDLVAADLGVDPAEVRR
                     KNFPGKDEFPFHTATGLDYDSGDYEAALDKAQQIAGYTQLREEQKKGREEGRLIGIGI
                     STYVEICALGPSQAMPAGGWESATVRIEPTGKVTVLTGASPHGQGQETSFAQIVADEL
                     GVSINDVTVIHGDTGVVQYGIGTFGSRATAVGGTAVYIAVQKLKEKAEKIASHILQAD
                     SSKVSFEGGKYSLEKAKAAGAAGSSDPVYPVGEGPAGALPEPQTEGRSSLTIAEIALA
                     AHLAKELPPDTEPGLSATYFFEPKNFTFPFGTHIAVVEVDRETGDIKFLRYVAVDDCG
                     KVINPMLVDGQVHGGIVQSIGQAMYEEVVYDD"
BASE COUNT          698 a          911 c          894 g          539 t
ORIGIN      
        1 agacgttcat ggcatacacc tacgaacaac taaaacacat gacgctcgcg gaactgcgcg
       61 agatcgccaa aggcggcgag caggaagtcg ttcagggcta cacgcagatg aacaaagagc
      121 acctggtcgg cgcgctcgcg aaagcgctcg gcattcagca cacaccccac gacgtagtgg
      181 gaatcgacaa gagctcaatc aaagctcgaa ttcgcgagtt gaagacgcag cgcgccgcgg
      241 cgatcgaagc gcacgatcac gcgcagttga aaacagtcag acgcacaatt caccggctca
      301 aacggcagat ccacaaagcg actgtgtaac tcgcgtttaa gctgtataat ctttgaacta
      361 aatctcaacc gaatcacaaa gtgaggtagc tcatgatcaa ggctatcaac ctgagcgtga
      421 atggtgtctc tcgcgacgac gaggtcgaac cacgcatgct cctcgttcat tacctgcgcg
      481 acgtcgtcgg cctaaccggc acacacgtcg gctgcgaaac gtcgctctgc ggcgcgtgca
      541 cagtctccgt cgatggacag gcagtgaaat cgtgcacgat gtttgccgtg caagctgacg
      601 gcgcgtcgat cacgactgtc gaaggtctcg cgaccaacgg ccaactgcat ccggtgcagg
      661 aaggtttctg ggaacgtcac gggttgcagt gcggctactg cacgccgggc atgatcatga
      721 ccgcggcgca gttgctcgaa cgcaacgcga atccgtcgcg cgaggagatc tgtcacggtc
      781 tcgaaggcaa tctgtgccgt tgcaccggtt accagcacat catcgaagcc gtcgaatacg
      841 ccgcgaagaa agcggcgggt tcctaaacgt tttgagttca accttcaggg agaacgaaag
      901 atgccaaata gttacgtcgg ccaacgagta aagcgcaccg aggacccgcg cctgatcaaa
      961 ggtctggcgc attacgtcga cgacattagc ctgcccggca cgcttcatgt cgcgtttgtg
     1021 cgctccgttt atgcacacgc caaaatcacc aacatcgaca cttcagcagc actcgccaag
     1081 ccgggtgtcg tcgccgttta caccggccag gacgtcgcgc agaaggttgg accagttccc
     1141 tgcgcgggcg cgttgccggg tttgaaagtg ccggaccatc gcgtgctcgc cggcgagaag
     1201 gtctacttcg tgggccatcc gatcgcggcg gtcgtcgcca tcgatcgtta cgccgcacgc
     1261 gacgccgcag atctgatcat cgtcgactac gaagatctgc cggttgtaac agatgtcgaa
     1321 caagccgctg ccggcggcac tgtcattcac gaatcgttcg gcgacaacat cgcttacaaa
     1381 atgacagccg gcgaaggcga catcgacgcc gctttcgctt ccgccgagcg cacggtcaaa
     1441 caacgcatac ttcaccggcg gctcgcaccg atcgcgatgg aaccgcgcgg cgtgctcgcg
     1501 cgctatttcc ccggcgaaga agaactgacg ctctggtcgt caacacagat tccgcacctg
     1561 atgcgcacgc aagtcgcctt gatgatcgga ctgcccgaaa acaagctgcg cgtgatcaca
     1621 ccggaagtcg gcggcggttt cggctcgaag ctcaacgtct actccgaaga agcgttgctc
     1681 ggctggatct cgatgcaact tcacaagccc gtgaaatgga tcgagacgag gcgcgaaaac
     1741 attcaagcga cgattcacgg acgcgggcag gtcggcgaca tcgaagtcgc tttcaagaac
     1801 gacggcacgc ttctcggtct gcgttacaat gtgttcgccg atctcggcgc gtatcaccaa
     1861 ctgctgacgc ccgcgatccc gacgctcacc ggcctgatgc tttcgggcgc ttacaggatc
     1921 ccggcgattc agatcaatat caccggctgt ttcacgaaca agatggccac ggacgcgtat
     1981 cgcggcgcgg gccgtccgga agcgacttac gttgtcgagc gcgcgcttga tttggtcgca
     2041 gcggatttgg gcgtcgatcc tgctgaagtg agacgaaaga acttccccgg caaggacgag
     2101 tttccattcc acactgccac cggtctcgat tacgacagcg gtgattacga agccgcactc
     2161 gacaaagcac agcagatcgc gggttacacg cagctacgcg aagagcagaa gaagggccgc
     2221 gaggaaggcc ggttgatcgg catcggaatc tcaacgtacg tggaaatttg cgcgcttggt
     2281 ccatcacagg cgatgcccgc cggaggttgg gaaagcgcca cggtgcgcat cgaaccaacc
     2341 ggaaaggtca cggtgttgac gggcgcgtcg ccacacggcc agggccagga aacctcgttc
     2401 gcgcagatcg tcgctgacga gctcggcgtg agcatcaacg atgtgactgt gattcacggc
     2461 gacaccggtg tggtccaata cggcatcggc acgttcggca gccgcgccac ggccgtcggc
     2521 ggcaccgcag tctacatcgc cgtgcagaag ctgaaagaga aagccgagaa gatcgcgtcg
     2581 cacatactcc aggcggattc gtcgaaggtc tcgtttgaag gtggaaaata ttcactcgag
     2641 aaagcgaagg ccgcaggcgc ggctggatct tccgatcccg tttacccggt cggcgaagga
     2701 ccagcaggcg cgctgcccga gccacaaacc gaaggccgtt cgagtctgac aatcgccgag
     2761 atcgcgctcg ctgcgcacct cgcgaaagag ttaccacccg acaccgagcc cggtctgtca
     2821 gccacttact ttttcgaacc gaagaacttc acgttcccgt tcggcacgca catcgccgtg
     2881 gtcgaagtcg atcgtgaaac cggcgacatc aagtttctgc gttacgtcgc cgtcgacgat
     2941 tgcggcaaag tgatcaatcc gatgctggtg gacgggcaag ttcacggcgg catcgtgcag
     3001 tcgatcggac aggcgatgta tgaagaggtg gtctacgacg ac
//
LOCUS       DASWTX010000531         2062 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_378007, whole genome shotgun sequence.
ACCESSION   DASWTX010000531 DASWTX010000000
VERSION     DASWTX010000531.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2062
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_378007"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1278)
                     /locus_tag="VGD38_08110"
     CDS             complement(<1..1278)
                     /locus_tag="VGD38_08110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728014.1"
                     /translation="MGQHNVEQEIDETKAQVFMKALLEDLRALAFMLEDGRVESGVTR
                     IGAEQEMFLVDRYFRPAPVSLEVLKHANDARLTTEIARFNLEANLTPLELANSCFTQM
                     EQELTTLIELARNSAATQGADVLLSGILPTLQRSDLTLDNLTPVARYHQLNRGVIGLR
                     GGPLSIHIKGLDELQLTHDNIMMESCNTSFQVHFQSSPREFANHYNVAQAITAPVLAA
                     AVNSPLLFGQRLWQETRVALFQHSTDERSRTQLARNQPTRVSFGDRWLRDSVVELFHD
                     QITRFRTIMITQPDENPFAVLARGETPLLSALRMHNGTVWRWNRACYGVTGGVPHLRI
                     ENRALPSGPTIVDEIANAAFFAGLMSVLPEAYGVIANRMSFDDAKLNFFRAARHGLDA
                     HFQWIDGHNHSAASLILDELLPLAQEGLASSGVL"
     gene            complement(1291..>2062)
                     /locus_tag="VGD38_08115"
     CDS             complement(1291..>2062)
                     /locus_tag="VGD38_08115"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016208 - AMP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY0728015.1"
                     /translation="AGEEELRHSMREYIDPEYPRCRFVVVPANHVDEQIMATAQAERS
                     DLIVMRSRRRPHRAALLGSTAESVSRMAPCPVLVLHNDGREFVSDALNVKRVLVAYDF
                     SDYSELALKYAVSIAQENQAELHLLHVLPPRSVNEPEIAWYPVMGGESAYHTAARRLQ
                     KAVPPEVHLWCNVTTAVSEGHAYREILDYAEQNEIDLISVGAHGAGFGMRALFGSNVD
                     RVLRQAQCPVLVARPLKPRMLVTVEKNTAAEWRRVLAS"
BASE COUNT          408 a          623 c          616 g          415 t
ORIGIN      
        1 caatacacct gaactggcca agccctcctg cgcgagtgga agtaactcgt cgagaatcag
       61 cgaagctgcg ctatggttat gcccgtcaat ccactggaaa tgcgcatcga gcccgtgtcg
      121 tgcggcgcgg aaaaagttca gcttcgcgtc gtcgaatgac atgcggttcg cgatcacgcc
      181 gtaggcttct ggcaggacgg acatcaggcc ggcaaagaac gcggcgttgg caatctcgtc
      241 tacgatcgtt ggacccgatg gcagggcgcg attctcgatg cgcagatgcg ggacaccgcc
      301 ggtcactccg taacacgcgc gattccaacg ccacacagtg ccgttgtgca ttcgcagcgc
      361 cgagagcaaa ggcgtctcac cacgcgccag caccgcaaac ggattctcgt ccggttgcgt
      421 gatcatgatc gtgcgaaaac gagtgatctg atcgtggaag agttcgacga cggagtctcg
      481 cagccagcga tcgccgaagc tcacgcgcgt cggttggttg cgtgcgagct gcgtacgcga
      541 gcgttcgtcg gtcgagtgtt ggaagagcgc gacgcgtgtt tcctgccaca atcgttgacc
      601 aaacaacaac ggcgaattaa cagcggcggc cagcaccggc gccgtgatcg cctgcgcgac
      661 gttgtagtga ttcgcgaact ccctcgggct gctttgaaag tgaacctgaa aactcgtgtt
      721 gcacgactcc atcatgatgt tgtcgtgagt caactggagc tcgtcgaggc ctttgatgtg
      781 aatcgaaagc gggccgccac gcaggccgat cacgccgcga ttcagttgat ggtaacgcgc
      841 gactggggtg agattatcaa gggttaaatc ggaccgttgt agcgttggca aaattccgga
      901 gagcagcaca tccgcaccct gcgttgcggc gctgttgcgc gccaactcga taagcgtggt
      961 gagttcttgc tccatctgag tgaagcagct gtttgcgagt tcgagcggcg tgaggttcgc
     1021 ttcgagattg aatcgggcga tctccgttgt cagccgggcg tcgttggcgt gtttgaggac
     1081 ttccaacgaa acaggcgccg gtctgaaata acgatcgacg agaaacatct cctgctccgc
     1141 gccgattcgc gtgacgccgc tctcgacgcg gccgtcttcg agcatgaacg cgagtgcgcg
     1201 caggtcttcg agcaacgcct tcatgaagac ctgcgctttt gtctcgtcaa tctcttgttc
     1261 gacgttatgt tgtcccacac gaacctcgcg ttacgaagcc agcacgcggc gccattccgc
     1321 cgcggtattc ttctctacag tcaccagcat ccgcggtttt agcggacgcg ctacgagtac
     1381 gggacactgc gcctgccgca gcacccgatc gacattcgat ccaaacagcg cgcgcatgcc
     1441 gaagccggcg ccgtgcgccc ccacgctgat caggtcgatc tcattctgtt ctgcgtaatc
     1501 caggatctcg cggtaagcgt gtccttcact caccgcggtg gtgacgttgc accaaagatg
     1561 aacctcgggc ggcaccgctt tctgcaagcg gcgcgcggcg gtgtgatagg cagactcgcc
     1621 gcccatcacc gggtaccacg cgatctccgg ctcgttcacc gaacgcggcg gcagaacgtg
     1681 cagcagatga agctctgcct ggttttcctg cgcgatcgaa acggcgtatt tcaaggccag
     1741 ctctgagtaa tcggagaagt cgtaagccac cagcacgcgt ttcacgttta gtgcgtcgct
     1801 gacaaactct cgcccatcgt tgtgcagcac cagcaccgga cacggtgcca tacgggaaac
     1861 tgactccgcc gtggagccca acagcgcggc acgatgcggg cggcgcctcg atctcatcac
     1921 gatcaaatcg ctgcgttctg cttgcgccgt cgccatgatc tgttcgtcca cgtggttggc
     1981 gggaacgacg acgaagcggc accgtggata ctcgggatcg atgtactccc gcatcgagtg
     2041 tcgcagttcc tcctcgccgg cc
//
LOCUS       DASWTX010000532         5868 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_93740, whole genome shotgun sequence.
ACCESSION   DASWTX010000532 DASWTX010000000
VERSION     DASWTX010000532.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5868
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93740"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..4822
                     /locus_tag="VGD38_08120"
     CDS             <1..4822
                     /locus_tag="VGD38_08120"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEY0728016.1"
                     /translation="NTVCQGAWALLLSCYSGDRDVVFGVAVSGRPPALENVETTIGMF
                     INTLPARVAVEPERMLIPWLKEIQRAQVEMRRYEYSPLVEVQRLSDVPRATPLFESIV
                     SFENHPIDQSLLRRSDKVELRDVVHYHTATGYPLNIIIEPGSELVVKMFYDFGRFTDA
                     SIALVLGHVRRLLTAIAADAERRVSELPLLTEAEERQLLVEWNDTAVAYRTPDAEVPL
                     HGLIEEQVLRTPTAMAVSSGGEHVSYEELNGRANQLAHRLRSLGVGAESLVGVVMERS
                     VELVVALLGILKSGAAYVPLDPSYPSARLAFMLADARLPVLLTQKHLLDELPSAHGAQ
                     VICLDIEREELDRESRDNLSAEVSGANLAYVIYTSGSTGKPKGAMNTHRGIVNRLLWM
                     QDAYHLTAEDQVLQKTPFSFDVSVWEFFWPLLTGARLVMARPGGHQESDYLVKLIAGA
                     ESARAPGGWTLHFVPSMLAVFLEEPGVSECAGSLRRVICSGEALSPDLMERFFERLPG
                     VELHNLYGPTEAAVDVTYWACDRNSERRTVPIGRPIANTQIYILDREQRPVPVGVAGE
                     LYIGGVNLGRGYLGRAALTAEKFVPHPFAKKPGGRLYRTGDLARFRADGEVEFLGRLD
                     HQVKVRGLRIELGEIEVAVAEHEAVRECVVVAREDTPNDVRLVAYLVPELGRAVPLQP
                     KVSGVERDQLLSNGQHSKLPNGMIVVGHGSLQASGVYREIFEDKIYLKHGIRIEDGDC
                     IFDVGANVGFFSLFVKQQARTARVYAFEPLPPNFAALRANVELYGLDVTLFECGLSKQ
                     RETATFTYYPNASAMSGRVSGLDKDKIATKANFQSWLQSFDHTAMPEGMAQQYGLDEF
                     LDHYLRSETYDCQLLTLSEVIREYGVERIDLLKLDVEQSEFDVLSGIEEDDWKKIRQL
                     VVEVHTEELLVLISDLLRQRGFTFNVDKSTHVEENGQDVVRIYMLYARAAETGSAESN
                     GHGPARAIQRELSLDELRASLRKTLPAHMIPNTFVVLDELPLTPNGKIDRRALPAPEQ
                     TSGTEEQERIEPRTPVEEIVAGICADVLKLERVNINSSFFDLGGHSLLAGQVISRVRE
                     IFRTELSLRDLFEMPTVAALAANIEKAQKAGLGLQTPPVRPVSSDQDLPLSFAQQQLW
                     VIDQMESGSVFYNIPVAVHLRGALDAQALEDAFTSLVGRHESLRTSFISNDGMPRQVI
                     APPAPFALPVDDVSELELDQRTARASEIAAREAQRPFDLAAGGLLRARLVRLSAEDHM
                     LVMVMHHIVSDGWSMEVLVRELIELYTANRERREPVLAPLPVQYKDFAVWQREWMQGD
                     VLEQQLAYWRKQLEGAPQFVELPTDRPRTLVQRFEGGRQIAVLSSELTESVRSLNQHE
                     GVTLFMTMLAAYAVLLHYLSGAHDILIGTDSANRNRAETENLIGFFVNQLVLRARLDG
                     DPSFRELVERVREVALEANAHQDVPFDKVVEAVSVERAVSVSPLFQVKLTMQNITPPA
                     AQVGELVLQQVEVEYGRAKFDLLLNAYDSERGLVMYFEYRTALFNAETIQRLLKHLET
                     ILFHAVSNPEIRLHELREVLAEHDAQLRTTLEQELEETTFRKFKSTTRRLIRAS"
     gene            5345..>5868
                     /locus_tag="VGD38_08125"
     CDS             5345..>5868
                     /locus_tag="VGD38_08125"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEY0728017.1"
                     /translation="MKGYRLSPQQQRLWRLLGENGPRGRTPFWSQAVLRLSGEPERRR
                     LEEAVRLLVKRHELLRTGFAALPGMGLPLQVIDEHGVPPVITWHELEGRSVGHARLLL
                     DQVLAAAREQAVEWEQGITLQVAVLGPVGREREWWLALSLPALYGDAQGLSNLGRELG
                     RCYATGAETLAADEV"
BASE COUNT         1160 a         1578 c         1944 g         1186 t
ORIGIN      
        1 caatacggtt tgtcagggtg catgggcgtt gctgttgagt tgctacagcg gcgatcgcga
       61 cgttgtgttc ggtgtggcag tttcgggccg cccgccggca ctcgaaaacg ttgagacgac
      121 gatcgggatg tttatcaaca cgctgcccgc gcgcgttgcg gtggagcccg aacggatgtt
      181 gattccgtgg ctgaaggaaa ttcagcgagc gcaggttgag atgcgccggt acgagtacag
      241 cccgctcgta gaagtacaaa ggttgagtga tgtgccgcgc gcgacgccgt tgttcgagtc
      301 gatcgtgtct ttcgagaacc acccgatcga tcagtcacta ctgcgcagaa gcgataaggt
      361 ggagttgcgc gacgtcgttc actaccacac tgctacgggt tatccgctca acatcatcat
      421 cgagccgggc agtgagttgg tcgtcaaaat gttttatgac ttcggtcgct ttactgacgc
      481 ttcgatcgcg ctcgtgctgg gccacgtgcg gcgtttgctc acggcgatcg ccgcggacgc
      541 ggagcggcga gtgagtgaac tgccgttgct gacggaagcg gaagagcggc agttgctcgt
      601 cgaatggaac gacactgcgg tggcctatcg cacgcccgat gctgaagtgc cgctgcacgg
      661 gttgatcgaa gagcaggtgc tccgtacgcc gacagcgatg gcggtcagca gtggcggcga
      721 gcacgtcagt tatgaggaac tgaacggccg cgctaaccag ttggcccatc ggctgcgctc
      781 gctcggcgtc ggtgcggaat cgctggttgg agtagtgatg gaacgcagcg tggagttagt
      841 ggtggcgctg ctgggcattc tcaaatccgg cgccgcatac gttccgctcg acccgagtta
      901 tccgtcggcg cggctggcgt tcatgctggc cgatgcgcgc ttgccggtgt tgttgaccca
      961 aaagcatctg cttgacgagt tgccctccgc gcacggtgcg caagtcatct gtctcgacat
     1021 cgagcgtgaa gagttggacc gtgagagtcg cgataatttg tctgctgaag tttcaggagc
     1081 aaacctcgct tatgtgattt acacgtcggg ttcgacaggg aaaccgaaag gggcgatgaa
     1141 cacgcaccgc ggcatcgtca accggttgct gtggatgcag gatgcttacc acctgacggc
     1201 agaagaccag gttttacaga agacgccttt cagcttcgac gtctcggtgt gggagttctt
     1261 ctggccgctg ctaacgggag cgcgtttggt aatggcgcgt cccggtgggc accaggagag
     1321 cgactacctg gtgaagttga tcgccggcgc tgaatctgcg cgcgctccgg gtggttggac
     1381 gctgcacttt gttccttcga tgctggcagt cttcctcgaa gagccagggg tgagcgaatg
     1441 cgcgggctct ttgcggcgcg tgatctgtag cggtgaggcg ttgagtccgg acctgatgga
     1501 gcgtttcttc gagcggctgc cgggcgtgga actgcacaac ctgtatggac caacggaagc
     1561 ggccgtcgac gtgacctact gggcgtgcga ccgcaacagt gagcggcgca cagttcctat
     1621 cggacgcccg atcgcgaaca cgcagatcta cattctcgat cgcgaacagc ggcccgtgcc
     1681 ggtgggagtc gcgggcgaac tctacatcgg cggcgtgaac ctcggacgcg gctatctggg
     1741 acgcgcggcg ttaacggcgg agaagttcgt gccgcacccg tttgcgaaaa agcccggcgg
     1801 caggctgtac cggacgggcg atctcgcgcg tttcagggct gacggcgaag tggagtttct
     1861 ggggcggttg gaccatcagg tgaaggtcag aggtctgcgg atcgagctgg gcgaaatcga
     1921 agtagcggtg gctgagcacg aggcggtgcg tgagtgtgtt gtcgtggcac gagaagacac
     1981 gccgaacgac gttcgtctcg tcgcttatct cgtccccgag ttgggccgcg cggttccgct
     2041 acagccgaaa gtgagcggcg tcgagagaga ccaattgctc tccaacggcc agcattcgaa
     2101 acttccgaac ggcatgatcg tcgtgggcca cggcagcctc caggcgagcg gcgtctaccg
     2161 cgagatcttc gaagacaaga tttatctcaa gcacggaatc cgcatcgaag acggcgactg
     2221 catcttcgat gtaggcgcga acgtcgggtt cttctcgctg ttcgtcaaac aacaggcgcg
     2281 caccgcgcgt gtctacgctt tcgaaccgct gccgccgaac ttcgcagcgc tgcgcgccaa
     2341 cgtcgagctt tacggcttgg acgtgacgct cttcgagtgc ggtctttcga agcagcgaga
     2401 gacggcaacg ttcacttact accccaacgc gtccgcgatg tccggcaggg tttcaggcct
     2461 cgataaagac aagatcgcga ccaaggccaa cttccagagc tggcttcaga gcttcgacca
     2521 cacggccatg cccgagggta tggcgcagca atacggactc gacgaatttc ttgatcacta
     2581 cttgcgcagc gagacttacg actgccaact ccttacgctc tccgaggtga tccgcgagta
     2641 cggagttgag cgcatcgatc tgttgaagct cgacgtagag cagagcgagt ttgacgtgct
     2701 cagcgggatc gaggaagacg actggaagaa gattcggcaa ctcgtcgtcg aggtccatac
     2761 ggaagaactg ttggttctaa tttccgatct cttgcgccag cgcggcttca cttttaacgt
     2821 cgataagagc acgcacgtgg aagagaacgg acaggacgtc gtgcgcatct acatgcttta
     2881 cgcgcgtgcc gcggagacag gaagcgcgga gtccaacggg catggaccag cgcgggcaat
     2941 ccagcgggag ctttcgctcg atgaattgcg cgcgtcgttg cgcaagacct tacccgccca
     3001 catgatccca aacacgtttg tcgtcctcga cgagttgccg ctcacgccga acggcaagat
     3061 cgatcgccgc gcgctgcccg cgcccgaaca gacctccggc acggaagagc aagagcggat
     3121 cgagccgcgc actccggtcg aagagatcgt cgccggcatt tgcgccgacg tgctgaaact
     3181 cgaacgcgtc aacatcaaca gcagcttctt cgatctcggc ggccattcgc tgctcgcggg
     3241 gcaggtcatc tcgcgtgttc gtgaaatctt tcgtactgag ttgtcgcttc gcgatctgtt
     3301 tgaaatgccg accgtcgcgg cgcttgccgc caacatcgag aaggcacaaa aggcggggct
     3361 cggactgcaa acgccaccgg ttcggcctgt gtcgagtgat caggacttgc cgctgtcgtt
     3421 cgcgcagcaa cagttgtggg ttatcgatca gatggagtcg ggcagtgtgt tctacaacat
     3481 tccggtggca gtgcatctgc gcggtgcgct cgacgcgcag gcgctggagg atgcattcac
     3541 gtcgctggta gggcgccacg agtctttgcg cacgtcgttc atctcgaatg acggaatgcc
     3601 gcgtcaggtc atcgcgccgc ctgcgccttt cgctcttccg gttgatgacg tctcagagct
     3661 ggagttggac cagcggacgg cgcgggcttc ggagatcgcc gcgcgtgaag cgcagcgtcc
     3721 gtttgacctt gcggcgggtg gactgctgcg agcgaggctg gtgcgattga gtgccgagga
     3781 ccacatgctg gtgatggtga tgcatcacat cgtctccgac gggtggtcca tggaggtgct
     3841 ggtcagggaa ttgatcgaac tctacacggc aaaccgcgag cgccgggagc cggtgctggc
     3901 gccgttgccg gttcagtaca aggacttcgc ggtgtggcag cgggagtgga tgcaaggtga
     3961 cgtgttggag cagcagttgg cgtactggcg gaagcagttg gagggcgcgc cgcagttcgt
     4021 tgagttgccg acggatcggc cgcgcacgct ggtgcaaaga tttgaaggtg gccggcagat
     4081 cgctgtgctc tcgagtgaac tcacggaatc cgtgagaagt ttgaaccagc acgagggcgt
     4141 gacgctgttc atgacgatgc tggctgcgta tgcggttctg ctgcactacc tgagcggcgc
     4201 gcacgacatt ctcatcggca cagactcggc gaatcgtaat cgcgcggaga ctgaaaacct
     4261 catcggcttc ttcgtgaacc agctcgtgtt gcgtgcgagg cttgacggcg atccgtcttt
     4321 cagggagctg gtcgagcgcg tgcgggaagt ggcgctcgaa gcgaatgcgc atcaggatgt
     4381 gccgttcgac aaagtggtag aagcggtaag tgttgaacgt gcggtgagtg tgagtccgtt
     4441 gtttcaagtg aaactcacga tgcagaacat cacgccgccg gctgcgcagg tcggtgagct
     4501 ggtgcttcaa caggttgagg ttgagtacgg gagggcgaag tttgacttgc tgctgaatgc
     4561 gtacgactca gagcgggggc ttgtgatgta ttttgaatac cgcactgctc tcttcaacgc
     4621 cgaaacgatc caacggctgt tgaagcacct cgagacgatt ctctttcatg ctgtcagcaa
     4681 ccctgagatt cgtctccacg aactgcgcga agttctcgcg gaacacgacg cgcagttgcg
     4741 aacgacgctt gaacaagagt tggaagagac gacgttcaga aagttcaaat caactacgcg
     4801 ccggctcatt cgcgcgtctt aagcgccccc gcacacgcac cgcttttgag acaacgcctg
     4861 gtaaatcatt tgaggcaacg cctggtaatc attgaggcaa ggccgagtaa tcatttgagg
     4921 taaggcctag taatcttgtg gggcaaggcc gagtaatcca ctgggcagtt acgaagtgcc
     4981 gagggtctga acgccgaagg cgtttaccaa tttcagccca gggttgttcc aaccctggga
     5041 cacacaacat aacaagaact caacgctgaa ggcgttcgcg aaggaaggcg ctgcttgcca
     5101 atgctttcag cattggtacc agatatttgt ttagtcccca gggttggcgg ttccgccaac
     5161 cctgggctga agttagtaaa cgccttcggc gttaggacac ttcgaatcac gtgaggacac
     5221 cgtcaggcac gtgaggacat caccgatcag ctgaagaccg gaccaatcac ctgggacccc
     5281 gaccaatcac ttgggacccg gaccaatcac ctgggacccg accaatcaca tgacagaggc
     5341 cttgatgaaa gggtaccgac tctcgccgca gcagcaacga ctgtggcggt tgctcggaga
     5401 aaatggacca cgtgggcgca caccgttctg gtcgcaggcg gtgctgcggc tgagtggcga
     5461 gccggagcgc cgccggttgg aagaggctgt gaggttgttg gtgaagcggc atgagctgtt
     5521 gcgtacggga ttcgcggcgt tgccgggaat gggcctgccg ctgcaggtga tcgatgagca
     5581 tggcgtgccg cccgtgatca cgtggcatga gttggagggg cgcagtgtag ggcatgcgcg
     5641 tttgttgttg gaccaggtgc tggccgcagc gcgcgaacag gcggtggagt gggagcaagg
     5701 aattacgttg caagtggcgg tgcttggacc agtcggaaga gagcgcgagt ggtggttagc
     5761 gttgagcctg ccggcgctgt acggcgacgc gcaagggctg agcaacttgg ggcgggagtt
     5821 gggccgttgt tatgcgactg gtgctgagac tctggcggcg gacgaagt
//
LOCUS       DASWTX010000533         1647 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_399920, whole genome shotgun sequence.
ACCESSION   DASWTX010000533 DASWTX010000000
VERSION     DASWTX010000533.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1647
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_399920"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..566)
                     /locus_tag="VGD38_08130"
     CDS             complement(<1..566)
                     /locus_tag="VGD38_08130"
                     /inference="COORDINATES: protein motif:HMM:NF015279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728018.1"
                     /translation="MPAATNSLSERVGNGDPAAVARAISKIEDGSAGAAALMKDIYQL
                     SRGALVIGITGAPGAGKSSLVDKLALLYRQRGERVGIVAVDPSSPFSGGAILGDRIRM
                     QTLGLDEGVFIRSMATRGNLGGLARATVDAVAILDAAGYAKVIVETVGVGQDEVEIVK
                     AADVSIVVLVPGMGDDIQAIKAGIMEIG"
     gene            complement(574..>1647)
                     /locus_tag="VGD38_08135"
     CDS             complement(574..>1647)
                     /locus_tag="VGD38_08135"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEY0728019.1"
                     /translation="APHVMEWDESQHFPIELKPKLAELGLMGVIFPEEYGGAGMGYVE
                     YATIIEELSRVDGSVGISVAAHNSLCSNHIYQFGTEEQRQKYLVPLASGQHLGAWGLT
                     EPSAGSDASGTKSTAVPSDGGWMVNGSKNFITHAIHADTCVAMAVTDKAKRSKGISAF
                     IFEKGMQGFSPSKKENKLGLRASETASVVFEDCFVPDGQLLGKEGMGFVNAMEILDGG
                     RISIAALAVGIAQGAYESALRYAQERQQFGKPISEFQAIQFKLADMATQIDAARLLMY
                     RAAWMKDNGKKTTRESSMAKLFASEMSVAVCEEAIQIHGGYGYTKDYPPEKYWRDSKL
                     CTIGEGTSEIQRIIIARELLKHV"
BASE COUNT          307 a          548 c          438 g          354 t
ORIGIN      
        1 tcgccgatct ccatgatccc ggccttgatc gcctggatgt cgtcgcccat gccgggcacc
       61 aaaaccacga tcgacacgtc tgccgcctta acaatctcga cctcgtcctg gccgacgccg
      121 acagtctcga cgatgacttt cgcataaccc gcggcgtcga gaatcgccac cgcgtccacc
      181 gtcgcgcgcg cgagaccgcc gagattgccc cgcgtggcca tcgaacgaat gaagacgcct
      241 tcgtcgagcc ccagcgtctg cattcggatg cgatctccga gaattgcgcc gcctgagaac
      301 gggctcgaag gatcgactgc aacgatgccg actctttcgc cgcgttggcg gtaaagcaac
      361 gcgagtttgt ctaccagcga cgactttccc gcacccggtg cgcccgtgat gccgatgacc
      421 agcgcgccgc gcgagagttg gtaaatgtcc ttcatcaacg cagccgcgcc cgcggagccg
      481 tcctcgatct tcgagatcgc ccgcgcgacc gccgccggat cgccattgcc gactcgctcg
      541 ctcaggctgt tagttgctgc cggcattact caatcaaacg tgcttcaaca gctcgcgagc
      601 gatgatgatt ctttgtattt cagaggttcc ctcgccaatc gtgcagagct tcgagtcgcg
      661 ccagtatttc tcgggcggat agtctttcgt gtagccgtaa ccgccgtgaa tctgaatcgc
      721 ttcctcgcaa accgcaacgc tcatctcgga agcaaataac ttcgccatcg acgactctct
      781 cgtcgttttc ttgccgttgt ctttcatcca cgccgcgcga tacatcaaga ggcgcgcggc
      841 gtcgatctgc gtcgccatgt cggcaagctt gaactgaatc gcctggaact ccgagatcgg
      901 tttaccaaac tgctgccgct cctgcgcgta acgaagcgct gattcgtaag cgccctgcgc
      961 gatgccgacc gcgagcgccg cgatcgagat gcgcccgccg tcgagtatct ccatcgcgtt
     1021 cacgaaaccc atgccttctt tgccgagcag ttgtccgtcg ggaacaaagc aatcttcaaa
     1081 gactacgctc gccgtctcag aagcgcgcaa tccgagtttg ttttccttct tcgacggcga
     1141 aaaaccctgc atgccttttt cgaagatgaa cgcggagatt cctttgctgc gtttcgcttt
     1201 atcggtcacg gccatggcga cgcacgtatc cgcatgaatc gcgtgcgtga tgaagttttt
     1261 cgaaccgttc accatccagc cgccgtcgct cggtacggct gtcgatttgg tccccgacgc
     1321 atccgagcct gcgctcggtt cggtcagtcc ccacgcgccg agatgctggc cactagcgag
     1381 cggcacgaga tacttttgcc tttgttcttc cgtgccgaac tggtagatgt gattcgagca
     1441 gagtgaattg tgcgccgcaa ccgagatgcc caccgagcca tcgacgcgcg aaagctcctc
     1501 gatgatcgtc gcgtactcga catagcccat gcccgcgccg ccgtactctt ccggaaagat
     1561 cacgcccatc agtccgagct cggccagctt cggcttcaac tcgatcggga agtgctggct
     1621 ttcgtcccat tccatcacgt gaggcgc
//
LOCUS       DASWTX010000534         2994 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_93796, whole genome shotgun sequence.
ACCESSION   DASWTX010000534 DASWTX010000000
VERSION     DASWTX010000534.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2994
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93796"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..669
                     /locus_tag="VGD38_08140"
     CDS             <1..669
                     /locus_tag="VGD38_08140"
                     /inference="COORDINATES: protein motif:HMM:NF012564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728020.1"
                     /translation="VGGQQTTMPLKINMGGVIPGIFASSVLSMPQSLFAAFPPDPNNM
                     NTTWAKIWTFFQTFHASDPYYELIFLSLIIFFTFFYVSIVFNVEEVADNLRKHGGFMP
                     GIRPGRATAEYLNTILTRLTVVGAIYLALVAFVPQFMLSGFKVARLPLIGAWLDSFVS
                     TTPGLSWIPNGMGYQFYFGGTSLLILVGVAMDTVAQIEAQLVMRNYDGFLGPGGGRLR
                     GRRS"
     gene            676..1317
                     /locus_tag="VGD38_08145"
     CDS             676..1317
                     /locus_tag="VGD38_08145"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0019205 - nucleobase-containing compound
                     kinase activity [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEY0728021.1"
                     /translation="MAKIIVLMGAPGAGKGTQARLLQERLYLPQISTGDIFRALKHAE
                     TPLAQEVRDIMARGHLVPDELTTRLVRERTAQPDCRNGYILDGFPRTPAQARSLEEIA
                     AEQDMEIVPVLIDVPYDLLEKRMTGRRNCPVCNEIYNIYFKPPRNDNVCDLHTDAQLV
                     QRADDNSETVRARLATFDEQTRPLIDYYRSTLRTVDGTREPEEIYQDIEQIVK"
     gene            1314..2084
                     /gene="map"
                     /locus_tag="VGD38_08150"
     CDS             1314..2084
                     /gene="map"
                     /locus_tag="VGD38_08150"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR00500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HEY0728022.1"
                     /translation="MIIGKSKRELEKMRAAGQLVGQVLAHLRTLVKPGVTTMEVDRSA
                     EKMIRDAGALPTFKGYNGFPYSICASVNEQIVHGFPSNYRLQDGDIFSIDVGVTLEGF
                     VGDTAATVPVGNVSEDRLKLIQVTEECLERAIKQCRPGKHLGDIGWAVQEHAEANGYT
                     IVRDYVGHGIGRRMHEDPQIPNYGRPGLGQKIKAGYVFAVEPMVNLGSHHTKVLADGW
                     TVVTVDGQPSAHVEHTIAITEEGPEVLTLVREASAAPA"
     gene            2177..2398
                     /gene="infA"
                     /locus_tag="VGD38_08155"
     CDS             2177..2398
                     /gene="infA"
                     /locus_tag="VGD38_08155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEY0728023.1"
                     /translation="MAKEEAIEVMAKVLETLPNAMFRVELEESQHQVLAHISGKMRKH
                     FIRILPGDRVLVELSPYDLNRGRITYRYK"
     gene            2414..2527
                     /gene="rpmJ"
                     /locus_tag="VGD38_08160"
     CDS             2414..2527
                     /gene="rpmJ"
                     /locus_tag="VGD38_08160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HEY0728024.1"
                     /translation="MKVRASVKKMCDKCKVIHRKGVVRVICANPKHKQRQG"
     gene            2540..2923
                     /gene="rpsM"
                     /locus_tag="VGD38_08165"
     CDS             2540..2923
                     /gene="rpsM"
                     /locus_tag="VGD38_08165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009125149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEY0728025.1"
                     /translation="MARVAGVDLPPNKRTEIGLTYIYGIGRSRSNAVLKEAGVNLDTR
                     VRDLSEDELSRIRGILEVQGEIEGDLRKRVQMDIKRLMDIGCYRGLRHRRALPVRGQR
                     THTNARTRKGPRRATIAKKKAPGKK"
BASE COUNT          651 a          760 c          946 g          637 t
ORIGIN      
        1 gtcggcgggc agcaaacgac aatgccgttg aagatcaaca tgggcggcgt tatcccgggg
       61 atctttgcgt cgtcggtgtt gtcgatgccg cagagtttgt ttgcggcgtt tcctcccgac
      121 ccgaataaca tgaacacgac gtgggccaag atctggacgt tcttccagac gttccacgcc
      181 agcgatccgt attacgagtt gatctttctg tcgttgatca tcttcttcac gttcttttac
      241 gtgtcgattg ttttcaacgt cgaggaagtc gccgacaacc tgcgcaagca cggcggtttc
      301 atgccgggca ttcgtccggg ccgcgcgacg gctgagtatc tgaacacgat tctcacgagg
      361 ctgactgtcg tcggtgcgat ttaccttgcg ctggtggcgt ttgtgccgca gttcatgttg
      421 agcggattca aagtagcaag actgccgttg attggcgcgt ggctcgactc gtttgtcagt
      481 acgacgcccg gtttgtcgtg gattccaaac ggcatgggtt atcagtttta cttcggtggt
      541 acctcgttac tcattctcgt cggtgtcgca atggacaccg tggcccaaat cgaggcgcaa
      601 ctcgtcatgc gtaactatga cggtttcctc gggccgggtg gcggccgttt gcgcggacgg
      661 cgatcctgat cctttatggc gaaaatcatc gtgttgatgg gtgcgcctgg tgccggaaaa
      721 ggcacgcagg cgcgcttgct tcaagagcgg ctgtatctgc cgcagatatc gaccggagat
      781 attttccggg cgctcaagca cgctgagact ccactggcgc aggaagttag agatattatg
      841 gcgcggggac atctggttcc cgacgagttg acaacgcggc tggtcagaga gcgcaccgcg
      901 caacccgact gcaggaacgg ttacatactc gacggctttc cgcgcacgcc ggcgcaggcg
      961 cggagtttgg aagaaatcgc cgccgagcag gacatggaga tcgttccggt gctgatcgac
     1021 gtcccgtacg acttgctcga gaagcggatg acggggcggc ggaattgccc ggtttgcaac
     1081 gagatttaca acatctattt caagccgccg cgcaacgaca atgtttgcga cctgcacacg
     1141 gacgcacagt tggtgcagcg cgcggatgac aattcggaga cggtgcgagc gaggctcgcg
     1201 acttttgacg agcagacgcg gccgttgatt gactattatc gttcgacttt gcgaacggtt
     1261 gacggcactc gcgaaccgga agagatttat caggacatag aacagatcgt taaatgatta
     1321 tcgggaagtc aaaacgggaa ctggaaaaga tgcgcgccgc gggacagctc gtggggcagg
     1381 ttttggcgca tctgcgaacg ctcgtgaagc cgggtgtgac cacgatggaa gtcgatcgct
     1441 ccgccgagaa gatgatccgc gatgcgggcg cgctgcctac gttcaagggt tacaacggct
     1501 ttccgtattc gatctgcgct tcggttaacg agcagatcgt gcacggtttt ccgtcgaatt
     1561 accgtttaca ggacggcgac atcttctcga ttgacgtcgg cgtgacgttg gaagggtttg
     1621 tcggcgatac ggcggcgacg gtgccggtcg ggaacgtgag cgaggaccgg ctgaagttga
     1681 ttcaggtgac tgaggagtgt ctcgagcgcg cgatcaagca gtgccggccg ggcaagcatc
     1741 tcggcgacat cggttgggcg gtgcaggaac atgctgaggc gaatggctac acgatagttc
     1801 gtgactatgt cggacacggc attggccgcc ggatgcacga ggatccgcag attccgaact
     1861 atgggcggcc gggattgggg cagaagatca aggcgggcta cgtttttgcg gtcgagccga
     1921 tggtgaacct gggctcgcac cacacgaagg tcctggccga cggctggacg gtcgtgacgg
     1981 tcgacggcca accgagcgcc cacgtcgagc acaccatcgc catcacggaa gaaggccccg
     2041 aagtcctgac cctggtgcgc gaggcctccg cggccccggc ctaaacttgg accgggttcc
     2101 gggtttggca aataaaaagg ctgcgtgcta ttattcgcag tttgtcggca gcgtcaaaac
     2161 ttcaatctga gaggatatgg cgaaggaaga ggctatagaa gtcatggcaa aggtgctgga
     2221 gactttgcct aacgctatgt tcagggttga gttggaagag agccagcatc aggtgctcgc
     2281 gcacatttca gggaaaatgc gcaagcactt tattcgcatt cttcctggtg acagggtttt
     2341 agtagagctt tcgccctacg atttaaatcg cggccgcatc acttatagat acaaataggg
     2401 acgaggttaa gtcatgaaag tccgtgcgtc ggtaaagaag atgtgcgaca agtgcaaagt
     2461 catccaccgc aaaggcgtgg tgcgggtgat ttgcgccaat cccaagcata aacagagaca
     2521 aggatagcga gaaataaaga tggcacgtgt agctggagta gatctgccac ctaacaaaag
     2581 aactgagatt ggtctcacct acatctacgg catcggccgt tcgcgttcga acgcggtgtt
     2641 gaaggaagcg ggtgtcaacc tcgacacgcg cgtccgcgat ttgagtgaag acgagctgag
     2701 ccgcattcgt ggcatcctgg aagttcaggg tgagattgaa ggcgacctgc gcaagcgtgt
     2761 gcagatggat atcaagcggc tgatggacat cggctgctat cgtggactgc ggcatcgccg
     2821 tgcgctgccc gtgcgtggac agcgtacgca caccaacgct cgcactcgta aaggtccgcg
     2881 tcgcgccacc atcgccaaga agaaggcgcc aggcaagaaa tagggcattg ttgattttcg
     2941 attgtcgatt gtcgatttgc ggcaagccgg cagcgtgaaa atcggcaatc ggca
//
LOCUS       DASWTX010000535         4251 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_179729, whole genome shotgun sequence.
ACCESSION   DASWTX010000535 DASWTX010000000
VERSION     DASWTX010000535.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4251)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4251
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179729"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2864
                     /locus_tag="VGD38_08170"
     CDS             <1..2864
                     /locus_tag="VGD38_08170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728026.1"
                     /translation="IGARQITEMPVQGLNPVNLVFTLPGVSDPGPLGSGFVQGTEFSV
                     NGLRPRANNQLIDGLDNNDNSITGQFYQPVLRDGYNEVTVLSSDYSAEYGRAGGAVVN
                     VITRSGTNEFHGSVYDVIIPSKLSALSPFEKAGLGLTKKPVTIENDYGFSFGGPIVKN
                     KLFFFSTIQWAPFRAGGVTSSPVVPTAEGFAQLRALFPAGASPNLDRYLATIGSLRGT
                     TGVFDVPLGGGRGSIPFGTATRTSSQPVDDTQYLFRVDWTPSSKDAFSVRYLADDQIF
                     SNQVPQFSTLLFEGTEVDVPSLVQNAYINWTRTFTPNTTNEFRFGYGRFNVLFNYRNA
                     DLLNAPPQFLFGGTASGVTGVGPDPTFPQGRIFNNWQFQDTISHTMGDHTIRAGFDVM
                     VQRAKQFVPINTRGTFAFTDAVDEDGNLIFPAFGNFVDNFSGNSGVFAQKVFGENVDF
                     PDVINQAYFINDNWRIRPNLTLNLGLRYELYGVAQNTAAFPAFCGFDVAFPTRCEVKR
                     DKNNFAPRFSFAYTPRFFKKLFGEDVTVIRGGFAVNYDTFFNNILSNTVATSPNAIGV
                     TTFGSDAADPRGFANASNTLPTETPAANPFATQSTVLPNLHNPKTYVWNLGIQRQLPW
                     KMVADVAYVGSRGIHLFINEELNPRNILVAGAPRVNPNRGPVQPRTNGGDSNYHSLQT
                     RLERGFANRLLFRAAYTFSKAIDNVNSEVFVTSGGTSRASDLLGNLGGRIVDRSVATY
                     DVPHVASFSFLYDIPALSENRIVRGITNGFTLSGIWRIQSGAVETAYLNGFDINGDGV
                     ATNDRPAISNPNAPANSVAIANSLCDVASPTGYCRNDFVTPILLNDARFVVDPDIRTG
                     LVGRNTLRAPSWNRLDLSLTKAIGLPFTPLENDKFEIRVDFFNVFNRPIFTWDAATVG
                     GLSDGDVFNTFFNQPELNGGPNNVLRTFRSGRIQLRYSF"
     gene            complement(2912..3505)
                     /locus_tag="VGD38_08175"
     CDS             complement(2912..3505)
                     /locus_tag="VGD38_08175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728027.1"
                     /translation="MNCCAIVLFSLLFVGFAKVVKSQSLFPGQTIRERNRAMDEHDRT
                     INRMKNDAKAAKERRRNLFPQINEDFQRIQVIHNEIVRMIQPDKNLDYNRLADLTDDM
                     KKRGARLRENLALAEPDKTETKPAHTEAVDESHIKTIIVALHDQVVSFVANPLFKNLG
                     VVDAKIIDSATENLNKIIDISDEIKREAKTLGKSAKK"
     gene            complement(3715..4068)
                     /locus_tag="VGD38_08180"
     CDS             complement(3715..4068)
                     /locus_tag="VGD38_08180"
                     /inference="COORDINATES: protein motif:HMM:NF039822.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5666 domain-containing protein"
                     /protein_id="HEY0728028.1"
                     /translation="MSKLSRALGAAMLCLGLLVSASVAIASQEQAAPAKDKAKKEQKT
                     TMINGTVSAVTDSALTIVDAEKAEHTLAVTSETKVTKAGKDAALTDVKANDVVTVEAQ
                     KGEGNTWTALRISVS"
BASE COUNT          865 a         1196 c         1130 g         1060 t
ORIGIN      
        1 cgattggcgc tcggcagatc actgaaatgc ctgttcaggg cttgaacccc gtcaacctcg
       61 tgttcacgct ccccggcgtc agcgatcccg ggcctttagg cagcggcttc gtacagggaa
      121 cagagttctc ggtgaatggt ctgcgtccgc gtgccaacaa ccagttgatc gacggactcg
      181 acaacaacga caactcgatc acgggccagt tctatcaacc agttctgcgc gacggttaca
      241 acgaagtgac cgtgttgtcg agtgactact cggctgaata cggccgcgcc ggtggcgcag
      301 tggtgaacgt gatcacacgc agtggaacga acgagtttca cggctcggtt tacgacgtga
      361 ttattccgag caagctctcc gcactttcac cgttcgaaaa agccggtctc ggtctgacta
      421 agaaacccgt cactatcgag aacgactacg gcttttcatt cggtggtcca atcgtgaaga
      481 acaagctgtt cttcttcagc acgattcagt gggctccgtt tcgagccggc ggcgtgacgt
      541 cgtcacccgt cgtgccgacc gcggaaggct tcgcgcaact gcgcgcgctc ttcccagccg
      601 gcgccagtcc gaacctggat cgttatctcg caacaatcgg ttcacttcgc ggtaccacgg
      661 gcgtgttcga cgtgcctttg ggcggcggac gcgggtctat tccgttcggt acggcgacgc
      721 gaaccagctc gcaaccggtc gacgatacgc agtatctctt ccgcgttgac tggactccca
      781 gttcgaaaga cgctttctca gttcgctacc tcgcggacga tcagatcttc tcgaaccagg
      841 tgccgcagtt ttcgacactg ctgttcgagg ggactgaagt cgatgtgccc agtctggtcc
      901 agaatgctta cataaactgg acacgcactt tcacgccgaa cacaaccaac gaatttcgtt
      961 tcggttatgg ccggttcaat gtgctcttca actaccgtaa tgccgacctg ctgaatgcgc
     1021 cgccgcagtt tctctttggc ggcactgctt cgggtgttac cggcgttggt cctgatccca
     1081 cgttcccgca gggtcgcatc ttcaacaact ggcagtttca ggacaccatc tcgcacacga
     1141 tgggcgatca cacgatccgc gcaggatttg acgtgatggt ccaacgtgcg aagcagtttg
     1201 tgcccatcaa cacccgcgga acgttcgcgt tcacggacgc ggttgacgaa gacggcaacc
     1261 ttatctttcc ggctttcgga aacttcgtgg acaacttctc aggcaactca ggcgttttcg
     1321 cgcaaaaggt atttggcgag aacgttgact tccctgacgt gatcaatcaa gcctacttca
     1381 tcaacgacaa ctggcggatt cgtccaaacc tgacgttgaa cctgggcttg cgttacgagc
     1441 tttacggtgt ggcgcaaaac acggcggcct tcccggcttt ctgtggtttc gacgtagcat
     1501 tcccgacccg ttgtgaggtt aagcgcgaca agaataactt tgcgccgcgc ttcagctttg
     1561 cttacacgcc acggttcttc aagaagttgt ttggtgaaga cgtaaccgtg atccgcggcg
     1621 gcttcgctgt gaactacgac acgttcttca acaacatcct cagcaacacc gtcgctacat
     1681 cacctaacgc gatcggcgtt acaacgtttg gctcggatgc ggcagacccg cgcggttttg
     1741 caaacgcatc caacactctc ccgactgaga ctcccgcggc gaatccgttt gcgactcagt
     1801 cgacagttct accaaacctg cacaacccga aaacctacgt ttggaattta ggcattcaac
     1861 ggcaactgcc gtggaagatg gtcgccgatg ttgcttacgt gggatcgcgt ggcattcacc
     1921 tcttcatcaa tgaagaactg aatccgcgta acatcctcgt cgccggcgcg ccgcgtgtta
     1981 atccgaaccg cggtccggtc caaccgcgca ccaacggcgg cgattcgaat taccactcgc
     2041 tgcagacgcg actcgagcgc gggttcgcta accggttgct attccgggct gcgtacacgt
     2101 tctcgaaagc gatcgacaac gtcaacagtg aagtgttcgt gacctcgggt ggaaccagcc
     2161 gtgcgtcaga cctgctcggc aatttgggtg gacgcatagt ggaccgcagt gtggcgacgt
     2221 atgacgttcc gcacgttgcg tccttctcgt tcctctacga tattcccgcc ctttcggaga
     2281 accgtatcgt caggggaatc acgaatggtt tcacgctttc gggcatctgg cgcattcaat
     2341 caggagctgt ggaaacggct tacttgaatg gctttgacat caacggcgac ggcgtagcca
     2401 ccaatgaccg cccggcaatc agcaatccga atgctccggc taactcggtg gcgatcgcca
     2461 acagtctttg cgatgttgca tcgccgactg gttattgccg caacgacttc gtcacaccga
     2521 tcctgctcaa cgatgcacgg ttcgtagtcg atcccgacat ccgtaccgga ctcgtcggac
     2581 gcaatacgct tcgtgctccg agttggaacc ggctcgatct cagtctgacc aaggcgatcg
     2641 gcttgccgtt cacgccattg gaaaacgaca agttcgagat tcgcgtggac ttcttcaacg
     2701 tattcaatcg tccgatcttt acgtgggacg cggctacggt gggtggtcta agcgatggcg
     2761 acgtcttcaa cacattcttc aaccaaccgg aactcaacgg tggaccaaac aacgttctcc
     2821 gtacgttccg ttcgggaaga attcaactgc gctattcgtt ctaagttacg attacgtgcg
     2881 ggaaagtcgg gggcgggact gggacccgcc ctcacttttt tgcagacttg cccagggtct
     2941 tcgcttcacg ctttatctcg tcgctgatat cgatgatctt gttgaggttc tcagtagccg
     3001 aatcgatgat ctttgcgtca actactccga ggttcttgaa gagcgggttc gctacgaagc
     3061 tgactacctg gtcgtgcaac gcaacgatga ttgtttttat gtgactctcg tcgaccgctt
     3121 cggtgtgcgc gggtttcgtt tcagtcttat caggttcggc gagtgcgaga ttctcacgca
     3181 ggcgagcgcc gcgtttcttc atgtcgtccg tcaggtcagc caaacggttg taatcgagat
     3241 ttttgtcagg ctgaatcatg cggacgattt cgttgtggat gacctggatg cgctggaagt
     3301 cttcgttgat ttgaggaaag agatttcgtc ttcgttcctt cgccgccttc gcatcgttct
     3361 tcattcgatt gatcgtgcgg tcgtgctcgt ccattgcccg gttgcgttcg cgaatcgtct
     3421 ggccggggaa gagtgattgg gatttgacga cctttgcaaa accgacgaat aagagtgaga
     3481 acagaacaat ggcgcagcaa ttcatgggtt tgaagccacg agggatccga gatctccact
     3541 ggttcatggt gtcgcctccg agttatctgt tgttgcaggc tggctggacg cgggtaagta
     3601 tatgcaaaaa aaacgacgag gtgtgagttt tttcctcacc tcgtcgcttc ttgttcgtaa
     3661 gccatcgcga agatcacacg cgaccggctg gtatgcgctg tttattctaa cagcttaaga
     3721 caccgaaatt ctcagtgccg tccacgtatt accttcgcct ttctgggcct caacggtaac
     3781 cacgtcgttg gctttcacgt ccgtaagagc tgcatccttt ccggccttgg tcactttcgt
     3841 ttcgctggtg accgcaaggg tgtgctcggc cttctcggca tcaacgatgg tcaacgccga
     3901 atctgtaacg gcagaaacgg ttccgttgat catggttgtc ttttgttctt ttttcgcctt
     3961 gtccttggct ggtgcagcct gttcctggct cgcgatcgca acgctggctg acacaagtag
     4021 tcccagacag agcatcgccg caccgagtgc tcttgataat ttgctcatct tcttcccttc
     4081 cttgattggt atttcaagcg ttcattaaac cgtcagctct atgaggattg gttatcccgg
     4141 atatgtgatg acgttgcgat acggtgatct actacattgc taattttgtc gcgcgcgcgg
     4201 gaacggattc tttgattcaa atatcgacaa tgaatcaaag ctacagttga t
//
LOCUS       DASWTX010000536         2239 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_356914, whole genome shotgun sequence.
ACCESSION   DASWTX010000536 DASWTX010000000
VERSION     DASWTX010000536.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_356914"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(493..1032)
                     /locus_tag="VGD38_08185"
     CDS             complement(493..1032)
                     /locus_tag="VGD38_08185"
                     /inference="COORDINATES: protein motif:HMM:NF019932.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY0728029.1"
                     /translation="MKKFALVVSFILLISFSAFGQAKPAPSDSEAVLATFNKLLDGIR
                     KADVKMVTDAYWNSPRLNLFNYNGTVTKGWEQMRKNRESSYPEIKDVDLQVKDVNVTM
                     LGTTSALVTCVWTQSQNYKGTPETASGRMTLVFRKIGTAWKAIHLHSSTDKPNPAVIP
                     PSEQVPAATPSPTPSPTPQ"
     gene            complement(1045..>2239)
                     /gene="gltX"
                     /locus_tag="VGD38_08190"
     CDS             complement(1045..>2239)
                     /gene="gltX"
                     /locus_tag="VGD38_08190"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR00464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009332 - glutamate-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEY0728030.1"
                     /translation="KGQQEDRTVKEVVTERARAQSLEGIDQRSNPYRDLSQEESDRRA
                     AAGEPFAVRLKVPESGQTRFDDIVYGPQERSYSEIEDLVLLRSDSHPLYNLSVVIDDI
                     EMGITHVIRGQDHLTNTHKQVLLYEALGAPVPRFAHLPLILAPNKGKLSKRKHGEVVS
                     LTTYRDRGFVPAAFRNFLALLGWSPPEGKEILSKEELIEHFSLEGIGRANAIFNFTEN
                     DPRRWTDDKALWVNAEYIRTMPLEELLPMVKGELRANKLWREEYDDDDRAWFAKTVDL
                     IRQRYFTLKDFSGQGRAYFSDDFDFDEAAVNKNLRKEPRLRELLKGLADKLETVEPFN
                     TETAEAALRAYAEETGVKAGLLINGSRTMLTGQAVGPSMFEIFDVLGKEKSVERLRSG
                     IPWSD"
BASE COUNT          455 a          649 c          598 g          537 t
ORIGIN      
        1 gtgtccgacg tctactcgcc gtactcgccg gagcacgcgg ggctgatctc ccccgaccgc
       61 cacgcggcca tggtcacgtt cgccccccgc ggcgactaac tcggctcact cgaacccggc
      121 aagatcgccg acttcgtcat ccacgacaca aacgactacc gcgacctcgc atactttttc
      181 ggcgtccagc acgtgtcaca agtttactgc gccggcaagc cgcagatctt gtgaacaaaa
      241 agcggttgac gctcgcctgc ttgtatctta tgattcgtcg caacactgga aaggaggtga
      301 ttctaaaatt tatgagttct tatcacagtg aggtggctgc ggcctgacct ctgaaccagc
      361 taaaccgtta ggattctggt tcggtagtct cactgcatag tgctcctcct ttctggacgg
      421 cacacagtca gcctcaggcc aatcccaaca gttcaccgaa agccgtccac gacgcgatcg
      481 tggacggctt ttttattgtg gcgtcggaga cggagtaggc gatggtgttg cagccggaac
      541 ttgttccgac ggcggaataa ctgccggatt tggcttgtcg gtcgatgagt gtaggtgaat
      601 cgccttccac gcggttccga tttttctgaa gacgagcgtc atgcggccgg aagctgtttc
      661 gggcgtgcct ttgtaatttt gtgattgtgt ccagacgcac gtcacgagcg cggaggttgt
      721 tccgagcatg gtgacgttga cgtccttcac ttggagatct acgtccttga tctccggata
      781 ggaactctcg cggtttttgc gcatctgttc ccagcctttg gtgacggtgc cgttgtagtt
      841 gaagaggttc agccgcggtg aattccaata ggcgtcggtg accattttca cgtccgcctt
      901 tctgattccg tcgaggagtt tgttgaaggt tgcgagcacg gcctctgaat ccgacggcgc
      961 cggtttggct tggccgaaag ccgagaagga aattagaaga ataaaactca cgaccagggc
     1021 aaactttttc atagattcga actcctaatc agaccaggga attccgcttc gtaagcgttc
     1081 gactgacttc tctttcccaa gcacatcgaa gatctcaaac atcgacggac caaccgcctg
     1141 gcccgtcagc atcgtgcgcg agccgttgat taacagcccg gctttcacac cggtctcttc
     1201 ggcataagcg cgcaacgcgg cttcggcggt ttcagtgttg aacggttcga cggtttcgag
     1261 tttgtcagca agacctttca gcagttcgcg cagacgtggc tccttgcgca ggtttttgtt
     1321 cacggcggct tcgtcgaaat cgaaatcgtc tgaaaaatac gcgcgccctt gcccggaaaa
     1381 atccttcaac gtgaagtacc gctggcgaat cagatcgacc gtcttcgcaa accacgcgcg
     1441 atcgtcgtcg tcatactctt cgcgccacaa cttattcgcc cgcaactccc cctttaccat
     1501 cggcaacaac tcttcgagcg gcatcgtgcg gatgtactcg gcgttcaccc acagcgcttt
     1561 gtcgtcagtc caacggcgcg gatcgttctc ggtgaagttg aagatcgcgt tcgcgcggcc
     1621 gatgccttcg agcgagaagt gctcgatcaa ctcctctttg ctgagtatct ctttgccttc
     1681 cggcggcgac catcccaaca gcgcaagaaa attacgaaac gctgccggca cgaaaccacg
     1741 atcgcgatag gtcgtcagcg aaacgacttc gccgtgctta cgtttcgaga gcttgccttt
     1801 gttcggcgcg agaatcagcg gcaggtgtgc aaaccgcggc accggcgctc ccaacgcctc
     1861 gtagagcagc acctgtttgt gtgtgttcgt gagatggtcc tggccgcgaa tcacgtgcgt
     1921 gatgcccatc tcgatgtcgt cgatcacgac cgacaggttg taaagtggat gactatcgga
     1981 gcgtaacaac acaaggtctt cgatttcaga ataactgcgc tcctgcggtc cataaacgat
     2041 gtcgtcgaat ctcgtttggc ccgactccgg cactttcaaa cgaacagcga acggctcgcc
     2101 ggcagcggcg cgtcgatcgg attcctcctg agacaaatcg cgatatggat tgctacgttg
     2161 gtcaatgcct tccaacgact gcgcccgagc gcgttcagtt actacttctt tgaccgttct
     2221 gtcttcctgt tgtccctta
//
LOCUS       DASWTX010000537         4182 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_244768, whole genome shotgun sequence.
ACCESSION   DASWTX010000537 DASWTX010000000
VERSION     DASWTX010000537.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4182
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244768"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1299
                     /locus_tag="VGD38_08195"
     CDS             <1..1299
                     /locus_tag="VGD38_08195"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEY0728031.1"
                     /translation="SITDASGLLRRKEISPVELTTSCLRRIEQLNPTVNAFITVLAES
                     ALDRARAAEAEILGGEWRGPLHGIPIGLKDLIDTAGVKTTCGSALFAERVPSEDAEVV
                     RLLKNAGAVLIGKQNMQEFAWGGTSSSSYFGPVRNPWDTERIAGGSSGGSAAAVAAGM
                     CFGAVGTDTGGSVRQPAAFCGIVGLKPTYGSVSMRGVFPLSPSLDHVGPLCRNVKDAA
                     LLFQVIAGLDEFELLDAKTKPRIGIVRRPFFDDIDPEIDNAFNEALKTLRELSVDIVE
                     VELPPTPAAVQAPEVYAVHAKHFAETPELYGRWMRGRLQQATEIGVVAYIEARQELDR
                     LRQFAGDVFPKVDLLITPTSPVPPITISEALEMSPSPAGERWLWNTRPFNAFGWPTIS
                     IPCGFTRAGLPIGLQIAGPNFTEATLLSFAYSFEQLMPSR"
     gene            1344..2294
                     /locus_tag="VGD38_08200"
     CDS             1344..2294
                     /locus_tag="VGD38_08200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728032.1"
                     /translation="MQIPFRLTKDLFILASFLLFTTNAVLAQNYRSAIEHESLLSMRF
                     YEATGSFLVEGLEVVFPPAGNEPATFQITKPGGEVVASVPLRLEPIEGFPAFAVFRPA
                     VGNPGNVKVAQTGDFVMSVKIGNVAITKVPFSLKEQVSGDPFKPGKTYVREGPWRDLA
                     FAATITDDPNAFLQFNWWMSTRELPAGITRPKVTVHVLHNGKEIAASRGPVVPDTLDW
                     YFYERHELYMPTLPKNKWLTLADLTKLNGEIAFVVKANGQPVKTYKTQVSGGQLRGLE
                     QSRLGYEPHASFISPRYVDLADRSRSSFTMRDMFWLKRTP"
     gene            complement(2307..3005)
                     /locus_tag="VGD38_08205"
     CDS             complement(2307..3005)
                     /locus_tag="VGD38_08205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728033.1"
                     /translation="MRIKGISLRLLAAAIAFALGVGIATYYRFRHNAPFAARKPKAEP
                     ARTGCFPGKSFQLHTTGKMTYFPTDAVSESRTEWYSKHLAAMKEASLYASDNDAVESY
                     RFLWLRSFHRPIAVRLWKTETDQFITFKETNGAGGYEPGDLVVDQTRKLERGEWDAFV
                     QRLDDMCYWNLPTNDPEFGGLDGAEWILEGVRGDRYHMVDRWTPQTGSYFEACVYALT
                     LAGFKSDPKAESIY"
     gene            complement(3010..3441)
                     /locus_tag="VGD38_08210"
     CDS             complement(3010..3441)
                     /locus_tag="VGD38_08210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728034.1"
                     /translation="MSDRKYRQRGYMDNDREPQRPKPQSQNREPQRPRDREGPRSPKM
                     MAFGETVKCSSCGAKAPSQINADSTCPNCRGALHTCRQCNFFDPSARFECSKTITARI
                     VNKNANNTCELFAPRTVVERQTGSGAPTDARQAFANLFKKS"
     gene            complement(3474..3725)
                     /locus_tag="VGD38_08215"
     CDS             complement(3474..3725)
                     /locus_tag="VGD38_08215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728035.1"
                     /translation="MTRIVKLLVIVSVLCVGPAAAQQIDKNARYLFYISGYIVAEGNT
                     RPASPKFGVYADQGVDRTRNRVGPHQPLDLSHFPKLTYA"
     gene            complement(3744..>4182)
                     /locus_tag="VGD38_08220"
     CDS             complement(3744..>4182)
                     /locus_tag="VGD38_08220"
                     /inference="COORDINATES: protein motif:HMM:NF019614.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1697 domain-containing protein"
                     /protein_id="HEY0728036.1"
                     /translation="INSGNIIFKTKETDARKLEKKIKKMLVREYELASKVVVRSFEEM
                     EQLVKSLPRSWDSDSGWRYYVIFLRHTIDSKDILTDVPAREGIEEVSYRPGTLLWSAQ
                     LDALTRTNINKLASRKLYQEMTVRNTNTTKKLYELMKKAVADS"
BASE COUNT          822 a         1141 c         1237 g          982 t
ORIGIN      
        1 agtatcactg atgcttccgg cttgctgcgc cggaaggaga tctcgcctgt cgagctcacg
       61 acgtcgtgtt tgcgtcgcat cgagcaactc aatccgacag tcaatgcttt tattactgtt
      121 cttgcggaga gcgcgttgga ccgggcgcgc gcggcggaag cggagattct cggcggtgag
      181 tggcgcgggc cgttgcacgg tattccgatc gggttgaagg atctgatcga cacggctggt
      241 gttaagacca cttgcgggag tgcgctgttt gcggaacgcg tgccgagtga agatgcggaa
      301 gttgttcgac tcttgaagaa cgcgggcgcg gttctgatcg gcaagcagaa catgcaggag
      361 tttgcgtggg gcggcacttc ttcgtcgagt tactttggtc cggttcgcaa tccgtgggac
      421 acggagcgga tcgcgggcgg atcgtcgggt ggttcggctg cggctgtggc tgcggggatg
      481 tgttttggtg ctgttggaac tgataccggc ggctcggtac ggcagccggc tgcgttttgc
      541 gggattgtgg ggttaaagcc gacgtatgga agcgtgagca tgcgcggcgt gtttccgttg
      601 tcgccgtcgc tcgatcatgt tggaccgctt tgccgaaacg ttaaggacgc ggcgctgttg
      661 tttcaagtga tcgccggtct cgacgagttt gaactgctcg acgcgaaaac aaagccgcgg
      721 atcgggatcg tgcggcggcc gttctttgac gacatcgatc ctgagatcga caacgcgttc
      781 aatgaagcgc tgaaaacgtt gcgcgagttg tctgttgata ttgtcgaggt tgagctaccg
      841 ccaacgccgg cggctgttca ggcgccggaa gtttatgccg ttcatgccaa acacttcgcc
      901 gagacacctg aactgtatgg acgctggatg cgcgggcgat tacaacaggc aaccgagatc
      961 ggcgtcgtcg cctacatcga agcccggcaa gagctcgatc gactccgaca attcgcgggc
     1021 gatgtgtttc cgaaagtcga tctattaata acgccaacga gtcctgtgcc gccgatcacg
     1081 atcagcgaag cgttagagat gtcgccgtca ccagcgggtg aacggtggtt gtggaacacc
     1141 cggccattca acgcattcgg ctggcccacc atctcgatcc cgtgcggctt cactcgcgcc
     1201 ggtctgccga tcggtttgca aatcgccggt ccaaacttca ccgaagcaac ccttttgtcg
     1261 tttgcttatt cgttcgaaca gttaatgcct tcgaggtaat cttgttcatc cgcaatcctg
     1321 tcaaaaaaat ggaggtgtgc tgagtgcaaa tccctttcag actcacaaaa gaccttttca
     1381 ttcttgcttc gtttctactg ttcacaacaa acgccgtgct cgctcaaaac tatcggtcgg
     1441 caatcgagca cgagtcgctg ctgtccatgc gcttctacga agccaccggc agctttctcg
     1501 tcgaaggact cgaagtagtt tttccacccg cgggtaatga accggcgacg ttccagatca
     1561 cgaaaccggg cggtgaagtc gtcgcgagtg ttccgctgcg tctcgagcca atcgagggct
     1621 ttcccgcgtt cgcagtgttt cgtcccgcgg tcggtaatcc gggaaacgtg aaggtggcgc
     1681 agaccggcga ttttgtaatg tcggtgaaga tcggcaacgt tgcgatcact aaagttccct
     1741 tcagtctcaa agagcaagtc agtggcgatc cgttcaagcc cggcaagacg tatgttcgcg
     1801 aaggtccgtg gcgcgacctc gccttcgccg ccacgataac agacgacccg aatgcgtttt
     1861 tgcagttcaa ctggtggatg agcacgcgcg agttgccagc gggaatcacg aggcccaagg
     1921 tcacggtcca cgtgctgcac aacggcaaag agatcgccgc gagccgtgga ccagtagttc
     1981 ccgatacgct cgactggtat ttctacgaac gtcacgagct ctacatgccg acgctgccga
     2041 agaacaaatg gctgacgctc gccgacctta cgaagctcaa cggcgagatc gcgttcgtgg
     2101 tcaaagccaa cggccagcca gtgaaaactt acaagacgca ggtgagcgga ggacaactgc
     2161 gcgggctcga gcaaagccgt ttaggctacg agccgcacgc gtcctttatc tcgccgcgtt
     2221 acgtcgacct ggccgacaga tcgcgttcga gtttcaccat gcgcgatatg ttttggttga
     2281 agcggactcc gtaggaaccg gcttagctaa tagatagatt cggccttcgg gtcgctcttg
     2341 aacccggcaa gtgtgagtgc gtaaacacac gcctcgaaat aactaccggt ctgcggagtc
     2401 cagcggtcga ccatatggta gcgatcgcct ctgacacctt cgaggatcca ttcggcgcca
     2461 tcaagaccgc cgaactcagg atcgttggtg ggcaggttcc agtaacacat gtcgtcaaga
     2521 cgttggacga atgcatccca ctcgccgcgc tcgagtttgc gcgtctgatc gacgacgaga
     2581 tctccgggct cataaccacc ggcgccgttc gtctctttga acgtgatgaa ttggtctgtc
     2641 tcagtcttcc agaggcggac tgcgattgga cgatgaaatg agcgcaacca caaaaaccgg
     2701 taactctcga ctgcgtcgtt gtcagacgcg tacagcgatg cttctttcat cgcggcgaga
     2761 tgctttgaat accactcggt tcgggattcc gagactgcgt cagtcgggaa gtatgtcatt
     2821 tttcctgtcg tgtgaagctg aaacgatttg ccggggaagc aaccggttcg cgcgggctcg
     2881 gctttaggct tccgcgccgc gaatggagcg ttgtgacgga aacgatagta ggtcgcgata
     2941 ccgacgccga gtgcaaaggc aatcgcggcg gccaggagtc tcagtgaaat tccttttatg
     3001 cgcatggctt tatgatttct tgaaaaggtt ggcgaacgcc tgacgagcgt cggttggcgc
     3061 gcctgaaccg gtttggcgct cgacgacggt gcgcggcgcg aacagttcgc aggtgttgtt
     3121 tgcgttcttg ttaacgatcc gggcggtgat cgttttgctg cactcgaagc gcgcgctcgg
     3181 atcgaagaaa ttgcattgcc ggcaggtgtg aagagcgcct ctgcagtttg gacacgtgct
     3241 gtcggcgttg atttgcgacg gcgcttttgc gccgcacgaa ctgcacttca ccgtctcgcc
     3301 aaaggccatc attttcggcg agcgcgggcc ttcgcgatcg cgcggacgtt gtggctcgcg
     3361 gttttgagac tgaggcttgg ggcgttgcgg ctcgcggtcg ttgtccatgt agccgcgctg
     3421 acgatacttg cgatcactca tgctttgctc ccggtgagta aacggatgat gcgctaagca
     3481 tacgtgagtt ttggaaaatg cgacaggtct agcggttggt gcgggcccac gcgattgcgg
     3541 gttcgatcca ctccttgatc ggcgtacaca ccaaacttcg gactagccgg ccgcgtgttt
     3601 ccctctgcca cgatgtagcc actaatgtaa aagagatagc gcgcgttctt atcgatctgc
     3661 tgtgcagcgg ctggtccaac gcaaaggaca ctcacgatca ccaggagttt tacgattcgc
     3721 gtcatctgtg ttttcacccc ggcttaacta tctgcgacgg ctttcttcat caactcgtag
     3781 agcttcttcg tcgtgttggt gtttctgacc gtcatctcct ggtacagctt gcggctcgcg
     3841 agtttgttga tgttcgttcg cgtcagcgcg tctagctgcg cggaccacag gagcgttccc
     3901 gggcgatagg aaacttcctc gatgccttcc ctggccggca cgtccgtgag gatatctttc
     3961 gagtcgatcg tgtggcgcag aaagatcacg tagtaacgcc aaccgctgtc gctgtcccaa
     4021 ctgcgcggca ggcttttcac gagctgttcc atctcctcaa agcttcgcac cacgactttc
     4081 gacgcaagct cgtattccct cacgagcatc ttcttgatct tcttctccaa cttccttgcg
     4141 tcagtctctt tcgttttgaa aataatattg ccgctattaa tg
//
LOCUS       DASWTX010000538         2776 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_73184, whole genome shotgun sequence.
ACCESSION   DASWTX010000538 DASWTX010000000
VERSION     DASWTX010000538.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2776
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73184"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1154
                     /locus_tag="VGD38_08225"
     CDS             <1..1154
                     /locus_tag="VGD38_08225"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEY0728037.1"
                     /translation="YGRAMGFIYGWTQFLIARTASAAALAVGVAIFLNDLVAGVLKHS
                     YFEYTLPGGHQLSFGRLEIVALSAIVVTTAINCAAVRVSGGVASVLTGMKIVLLVGIG
                     FGAFFYSDGNWGNLAMTNQGACEGVAITSGGVAGLAAAMIGALWAYDGWNNITFLAGE
                     VKNPGRNLPLALIGGGFLVMALYLFVNVNYYHVLTPTQIADVPGSSSVAAEVVRRLLG
                     AGAVTLMAAAMMTSSFGALHASLLATARVPYALAKDGLAPSALSYVSPRTHVPIRALI
                     VQGSLGCLVVLAFSAAYDTITDYAVFALTLFYVLVTGSVFIFRRRLPDAERTYRTWGY
                     PVVPLIFMAVSGWLIVQTIHDSPRKSAIGLFLILLGLPVYYLLDRRRST"
     gene            complement(1124..1900)
                     /locus_tag="VGD38_08230"
     CDS             complement(1124..1900)
                     /locus_tag="VGD38_08230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728038.1"
                     /translation="MASRTLPGAYWTHNDSGGGPFIYAFNTRGNSLGVFRVTGANARD
                     WEDISVGPGPQANKSYLYIGDIGDNSGVRADIVIYRVLEPDLKSANKGSTKARPLTTA
                     SAEAIRLKYPDGKHDAETLLVHPTTGNLYILTKALFANPIVYEATAPLTAGKTITMKR
                     ISEVRIPSLLGGAITGGSVSPDGRRVALCDYFSGYELVLPASSRNFNDIWKQTTTGFD
                     LGKRKQGEAIAYRLDGNALLATSEGREFDLIQVERRRSNR"
     gene            complement(2008..>2776)
                     /gene="murE"
                     /locus_tag="VGD38_08235"
     CDS             complement(2008..>2776)
                     /gene="murE"
                     /locus_tag="VGD38_08235"
                     /inference="COORDINATES: protein motif:HMM:TIGR01085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="UDP-N-acetylmuramyl-tripeptide synthetase"
                     /protein_id="HEY0728039.1"
                     /translation="INVDDPYGVELADKLENEGLSVIRYAVKAHADVTAHDAEFSLEG
                     MKFQLLTSGTEREFRSPLVGAPHIYNTLAAVASGLALGYSLDVITAALENCAGAPGRF
                     ERVPHDGDFSVVVDYAHSDDALVNVLRTAREVVKGKIITVFGCGGDRDRTKRAPMGEA
                     AGSLSDVVILTSDNPRTEDPEQILCDAEEGIKKTGKPYRKIADRTEAIHEAIAEARTG
                     DLVLIAGKGHEDYQIIGREVFHFDDKEVARAALAAKG"
BASE COUNT          471 a          795 c          867 g          643 t
ORIGIN      
        1 cttacgggcg tgcgatgggt ttcatttatg gctggacgca gtttctcatc gcgcgtaccg
       61 cttcggccgc ggcgctcgcg gtcggcgttg cgatctttct gaacgatctg gtcgccggtg
      121 tgctcaagca cagctacttt gaatacacgc ttccgggcgg acatcagctt tcattcggcc
      181 gcttagagat cgtggcgttg agcgccatcg tcgttaccac ggcgatcaac tgcgcggccg
      241 tgcgcgtgag tggtggcgtg gcgagcgtgc tcacgggaat gaagatcgtg ctgctcgtcg
      301 gcattggttt tggcgcgttc ttttacagcg acggcaactg gggcaacctc gcgatgacga
      361 accagggtgc ttgcgaaggc gtcgcgatca caagtggcgg cgtggcggga ttggcggccg
      421 cgatgatcgg cgcgttgtgg gcctacgacg gttggaacaa catcacgttc ctcgcgggtg
      481 aagttaagaa tcccggacgc aatctgccgc tcgcgttgat cggcggcggc tttctcgtga
      541 tggcgctcta ccttttcgtg aatgtgaatt actaccacgt gctcacgccg acgcagattg
      601 cggacgttcc cggatcgtcg tcagtcgcgg cggaggttgt aagaagacta ctcggcgccg
      661 gcgcagtgac gttgatggct gcggcgatga tgacgtcttc gttcggcgcg cttcacgctt
      721 cgttgctggc gaccgcgcgc gttccgtacg cgttggcgaa agacgggctt gcgccgagcg
      781 ctttgtcgta cgtttctccg cgcacgcacg tgccgatcag ggcgttgatc gtgcaaggca
      841 gtttgggatg tctcgtagtg ctcgcgttct cggctgctta cgacacgatc acggattatg
      901 ccgtcttcgc gttaacactg ttctatgtgc tggtgaccgg atcggtcttc atctttcgcc
      961 gccgcctgcc cgacgccgag cgcacgtatc gcacgtgggg ttatccggtc gtgccgctaa
     1021 tcttcatggc ggtatcgggt tggctcatcg tgcagacgat ccatgactca ccgcgcaagt
     1081 cagcgatcgg attgttcctg attttgttgg gattgccggt ttactacctg ttggatcgac
     1141 gccgttcgac ctgaatcaga tcaaattctc ttccttcgct cgtcgcgagc agcgcgttgc
     1201 cgtcgagacg gtaggcaatc gcctcgcctt gcttgcgttt gccgagatcg aaccccgtcg
     1261 tcgtctgttt ccaaatatcg ttgaagtttc tgctgctggc aggaaggacc agttcgtagc
     1321 ctgagaagta atcgcagagc gcgaccctgc ggccgtcggg cgagacgctg ccgccggtga
     1381 tcgcgccgcc gaggagactc ggaatacgaa cctcgctgat gcgcttcatc gtgatcgttt
     1441 tgcctgctgt gagtggcgca gtggcttcgt agacgatcgg gtttgcgaac aacgctttcg
     1501 tcaggatgta gagattgccc gttgtcggat gcacgagcaa ggtttccgcg tcgtgcttgc
     1561 cgtccgggta cttcagacga atcgcttcgg cggatgcggt cgtgagtggc cgcgctttgg
     1621 ttgagccttt gtttgcagac ttgaggtcgg gttcgaggac gcgatagatg acgatgtcgg
     1681 cgcgtacgcc gctgttgtcg ccgatgtcgc cgatgtagag gtacgacttg tttgcttgtg
     1741 ggcctgggcc aaccgagatg tcttcccagt cgcgcgcgtt tgcgccggtg acgcgaaaga
     1801 cgccgaggga gttaccgcgt gtgttgaagg cgtagatgaa tgggccgccg ccggagtcgt
     1861 tgtgggtcca gtaggctccc ggcagagttc gagaagccac gaggccgctg ctttcggtta
     1921 cggaagggat cgctatggtc gtaagtttcg cgggcgaacc atacgtttgg acgagaatca
     1981 acgcgaaaaa aagaactgat aaatacatca accttttgca gccagcgcgg cgcgggcgac
     2041 ttccttgtcg tcgaagtgaa acacttcgcg cccgatgatc tgatagtcct cgtggccctt
     2101 gccggcgatt aaaacaaggt cgccggtgcg ggcttcggcg atcgcctcgt gaattgcctc
     2161 cgtgcgatcg gcgatcttgc ggtatggttt gccggttttc ttaattccct cttccgcgtc
     2221 gcacaggatc tgttccggat cttccgtgcg tggattgtcg gaagtcagga tcaccacgtc
     2281 gctcaaactg cccgccgctt cacccatcgg cgcacgcttt gttcgatcgc gatcgccgcc
     2341 gcaaccaaac accgtgatga tctttccctt cacgacctcg cgcgccgtgc gcaacacatt
     2401 cacgagcgcg tcgtcgctgt gcgcgtaatc aaccacgacc gaaaaatcgc catcgtgcgg
     2461 cacgcgctcg aaacggccgg gcgcgccggc gcaattctcc aacgccgccg tgatcacatc
     2521 caggctgtag ccgagcgcga gcccgctcgc gaccgcagcg agcgtgttgt aaatgtgcgg
     2581 cgcgccgacg agtggcgaac gaaactcgcg ttcggttccg gaagtcagaa gttgaaactt
     2641 catcccctcc aaagagaact cggcgtcgtg cgcagtcaca tccgcgtgcg cctttacggc
     2701 atagcgaatc acactcagcc cttcgttctc gagtttgtcg gctaactcga cgccgtacgg
     2761 atcgtcgaca ttgatc
//
LOCUS       DASWTX010000539         1585 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_116469, whole genome shotgun sequence.
ACCESSION   DASWTX010000539 DASWTX010000000
VERSION     DASWTX010000539.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116469"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1204)
                     /locus_tag="VGD38_08240"
     CDS             complement(<1..1204)
                     /locus_tag="VGD38_08240"
                     /inference="COORDINATES: protein motif:HMM:TIGR01494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HEY0728040.1"
                     /translation="METSPDGLSSDEVAKRLEEYGPNELQARAHVSPWTILLEQFKNV
                     LLIILLLATALSAFLGHGVEAIAITVFVLFAVILGFIQEFRAERAIEALREMAAPSAT
                     AIRDGQDQRVPARDLVPGDVIILSTGDKVPADARLIEAVNLQTVEAPLTGESAPVEKH
                     TRPLPEETLPAGDQKNMAFAGTAVTYGRGRALIVATGMSTEFGKIARMLEEVDTAKTP
                     LQKNLDRIGKSLARAAFAVVAVIVALGLFRGQPFVEMLIFGVALAVAVVPEALPAVVT
                     ISLALGVKRMVRRNALIRRLPAVETLGSTSVICSDKTGTLTKDEMTVRQLYVAGHTIE
                     VSGTGYEPTGTFSTNGSGVVGSEALSTLLRAGVLASDARVEQKNGSGTWEVKGDPTEG
                     ALVVAAAKA"
BASE COUNT          330 a          480 c          455 g          320 t
ORIGIN      
        1 cggctttcgc ggccgcgacg acgagcgcgc cttcagtcgg gtcgcctttt acttcccacg
       61 taccggaacc atttttctgc tcgacgcgcg catctgaagc gagtacgccg gcgcgcaaca
      121 acgtcgataa agcttccgat ccgacaacac cggagccgtt cgttgagaac gttccggtcg
      181 gttcgtaccc ggtgccggaa acctcgatcg tgtggcccgc gacataaagc tgccgcaccg
      241 tcatctcgtc tttcgtcaac gtgccggtct tgtctgaaca aatcaccgac gtgctgccga
      301 gcgtttcgac cgcgggcaga cgccgaatca atgcattgcg acggaccatt ctcttcacgc
      361 caagcgcgag cgagatcgtg acgaccgccg gcaacgcttc aggcacaacc gccaccgcga
      421 gcgcaacgcc aaagatcaac atctcgacaa acggctgacc gcgaaacagc ccgagcgcga
      481 cgatgacggc gacaaccgca aacgcagcac gtgcgagcga cttgccgatg cggtcgaggt
      541 tcttctgtaa cggcgttttc gcagtgtcga cctcttcaag catccgcgcg atcttgccga
      601 actccgtcga catcccggtg gcgacgatga gtgcgcggcc gcggccgtac gtcaccgcgg
      661 tcccggcaaa cgccatgttc ttctgatcgc cggccggcag tgtctcttcc ggaagcggtc
      721 gcgtgtgctt ttcaaccggc gcggattcac cggtcagtgg tgcttcaact gtttgcaggt
      781 taacggcttc gattaaccgc gcgtcggcgg gaactttgtc gccggtcgat aaaataatga
      841 cgtcaccggg aacgagatcg cgtgcgggca cgcgttgatc ttgtccgtcg cggatcgccg
      901 tcgccgaagg cgcggccatt tcgcgaagcg cttcgatcgc tcgctcggcg cgaaactcct
      961 gtatgaatcc gagaatcacg gcgaaaagca cgaacaccgt gatcgcgatc gcttcaacgc
     1021 cgtgacccag aaacgcggag agcgctgtcg ccagcaataa aatgataagg agaacgtttt
     1081 tgaattgttc gagaaggatg gtccatggtg agacgtgagc gcgggcttga agttcgtttg
     1141 gaccatactc ttccagccgc tttgcgactt catcagagct gagtccatcg ggactcgtct
     1201 ccaaacgctt aaagcaatct tctactgtta atgtgtgcca ggccggaccg ccagtgttcg
     1261 gagaacggga cattccctaa tcctttcgcg cgtcaacgcg gatgacgtat gaaacgccgc
     1321 gcaaaaagga aaaccctttg cgcgccgcaa gccgcaaaag gtcttggtcg tggagctgac
     1381 tggttgccct acccgatgcg ccggggccca tgttgagcac cgtgttgacg gcggcaccgg
     1441 accaaagtgg caggtgacct actccccttt tcgtactctg attctacgca tgtagtatga
     1501 ctggtgtcca atcatcaatt cggagacgtg aatgcggata cttttggttg aggatgaacc
     1561 cagtgcggcc acgatgctcg ccaag
//
LOCUS       DASWTX010000540         6084 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_378131, whole genome shotgun sequence.
ACCESSION   DASWTX010000540 DASWTX010000000
VERSION     DASWTX010000540.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6084
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_378131"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..619)
                     /locus_tag="VGD38_08245"
     CDS             complement(<1..619)
                     /locus_tag="VGD38_08245"
                     /inference="COORDINATES: protein motif:HMM:NF014713.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcdA"
                     /protein_id="HEY0728041.1"
                     /translation="MGDQGINILISFAAGVLSFLSPCVLPLVPGYISLISGVSVDQLK
                     EGTSSRRAVILNSLAFNAGLSVIFLVLGTTAGLVGAALMSNPWVRIIGGLVIIAFGLQ
                     LIGLLKISALYRDTRSFSEGKPRGVWGSAALGVAFAAGWTPCIGPILGGIIGLAATSG
                     GWRSGLLLSAFYSAGLAVPFLLTGLGINQFLGFYKNFRRHLHKVEV"
     gene            complement(624..1901)
                     /locus_tag="VGD38_08250"
     CDS             complement(624..1901)
                     /locus_tag="VGD38_08250"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HEY0728042.1"
                     /translation="MLLLPASLTAQQDLNAAKPADPAKPETRPAQALYEDANGYLGRR
                     YQEFNKKKLPYDPKLEAQTKKEQQELAVKNAGILKARSPLSNDDLYYLGMLHHLAGDA
                     DAALTTMRSLLKSDPDGTQAQAARNVVVLYAVKKNLLDEAKAAVEAYARHKPQNADER
                     YRMELLLTDAYFRAKDYPAMAAHAQQMLAASKEFSKTNRKETFRRDDMLLKSGFLLAD
                     AQTKTNQKAKAIETLEDLRRLSIELPSGNLYKLVTFRLFTLDPEFDIEKAFDEPSTAL
                     PPEITGTQWLDQAPVKLSDLRGKIVLLDFWAHWCGPCQVTLPQLTRWHQKYKDKGLVI
                     LGITKYYGHGGQEPMTPGEELAFLRDFKKRYKLPYGIVVGEKDVNELNYGVNSIPMSF
                     LLDRKGVLRYISPGASDEEIESLGKMIQKLVDE"
     gene            complement(1935..3068)
                     /gene="thiO"
                     /locus_tag="VGD38_08255"
     CDS             complement(1935..3068)
                     /gene="thiO"
                     /locus_tag="VGD38_08255"
                     /EC_number="1.4.3.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR02352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016647 - oxidoreductase activity, acting
                     on the CH-NH group of donors, oxygen as acceptor [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine oxidase ThiO"
                     /protein_id="HEY0728043.1"
                     /translation="MTDKYRTAEVVIVGGGVIGLTIARALAQRGVRDVCLVERAALGA
                     EASFAAGGILAPQAEANARDEFFELASRSRELYKDFAAALREETGVDVELDSTGTLYV
                     ALSERDVDEIEKRYEWQSKAGLVVEKLTAAEARELEPCVAETVEGALRFPRDVQVENR
                     RLLNALVNSVDKLKVHVATETNVESIAIERGRVLGVQTSRGFVSCQTVVVAAGSWSST
                     IDNAHTPKIEPVRGQMICFDAKPQLTRHIIYSPRGYLVPRHDGRLLAGSTSENAGFTK
                     QVTAGGVSHILANAHEISPQISNLPITDTWSGLRPRAADGLPVLGPCDEIDGLFYATG
                     HYRNGILLAPVTGELIAEAVVAGRISPLLAAFSPNRFDLAHVS"
     gene            3096..4094
                     /locus_tag="VGD38_08260"
     CDS             3096..4094
                     /locus_tag="VGD38_08260"
                     /EC_number="1.1.1.41"
                     /inference="COORDINATES: protein motif:HMM:TIGR00175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005962 - mitochondrial isocitrate
                     dehydrogenase complex (NAD+) [Evidence IEA];
                     GO_component: GO:0045243 - cytosolic isocitrate
                     dehydrogenase complex (NAD+) [Evidence IEA];
                     GO_function: GO:0004449 - isocitrate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0006102 - isocitrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate dehydrogenase (NAD(+))"
                     /protein_id="HEY0728044.1"
                     /translation="MHAITLSPGDGIGPEVASNVVRIIEASGVEIQWETHYAGAQALE
                     KFGNTLPQELLDSIIRNKVALKGPITTPVGKGFTSVNVGLRKTLDLYANLRPVRALPN
                     VPCRYPELDLVVVRENTESLYAGLEHEVVPGVVESLKIITEKASTRIARFAFEYARRE
                     GRKKVTAVHKANIMKMSDGLFLNCFRRVAAEYPEIEADDKIVDNACMQLVMRPEQFDI
                     MLLENLYGDIVSDLCAGLVGGLGLVPGANIGEKGAIFEAVHGSAPDIAGQGIANPTAL
                     LQSGILMLRYIGERDAATRIENAMLAVFQEGKVRTRDIGGTARTAEFADAIIQKMV"
     gene            4134..5090
                     /locus_tag="VGD38_08265"
     CDS             4134..5090
                     /locus_tag="VGD38_08265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728045.1"
                     /translation="MKHFLTMLLVLPLCVSIARAQEFTVAQSRVFAPQNKKVLLLKDG
                     ASDRKIILFQTNLRVNTDGSPLSYHPQDPRGRTKALNNICNGIAVRRVGSNSNLCFTA
                     FGEAIRVFEKFRDSNFQTVPPGFRITWNKVLATVQENGKEVPCVFKSGEFKGYFGSLT
                     ALRNGLTTDRGECEVNDQVNPMTVPALVLAGGQHPVKDFGAKVGDLLIAYNPRTQLFT
                     TAIIGDSGPPDNLGEGSVALNMKLLGTTTPPTNKQETFQLSIENTKVLIAIIPGSRLF
                     NVAKPYTADNINQRIDAWRAEAGFTTPEKLIELMKAFQPRLN"
     gene            5167..5379
                     /locus_tag="VGD38_08270"
     CDS             5167..5379
                     /locus_tag="VGD38_08270"
                     /inference="COORDINATES: protein motif:HMM:NF017353.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEY0728046.1"
                     /translation="MGLPNNDEMEGKWDQAKGRVKEGLGRALDDDDLEAEGAADRAGG
                     NIQEGYGKAKRNIGEAIEDVGDAIKR"
     gene            complement(5454..5969)
                     /locus_tag="VGD38_08275"
     CDS             complement(5454..5969)
                     /locus_tag="VGD38_08275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728047.1"
                     /translation="MADKDNAKLVTGLFKSKVAAEAAVDALLKRGFSRDDISVLMSDE
                     TRSKHFALQSRTHAADGLGIGAAAGGTVGAVLAAIAAVGSTLFLPGLNLVIAGPIAAA
                     LAGLGAGGAAGGLIGALIGAGIPEYRAKVYEAGIRGGGILIGVLGRDDEDVNRIEELL
                     EELGAEHVRTE"
BASE COUNT         1368 a         1777 c         1687 g         1252 t
ORIGIN      
        1 ccacttcgac tttgtgcaag tgtctgcgga agtttttgta aaaacccaga aactgattaa
       61 tgccgagacc ggtcaacaga aacggcaccg caagaccggc tgaataaaat gccgataaga
      121 ggagtccgct acgccaaccg ccgctcgttg ctgccaggcc gatgattcca ccgagaatcg
      181 ggccgatgca cggcgtccaa ccggcagcga acgcgacgcc gagtgcggct gaaccccaaa
      241 caccgcgcgg cttgccttca gagaacgaac gcgtgtctcg atacagcgcg gagatcttga
      301 gtagtccgat cagttgcagg ccgaaagcga tgatcacaag gccgccgata atccgtaccc
      361 acggattgct catgagcgcg gcgccgacga gacccgcggt cgtgccgagc acgagaaaga
      421 tgacggaaag cccggcgttg aaggcgagcg agttgagaat gaccgcgcga cggctgctcg
      481 ttccttcctt gagttgatcg acactgacac cggagatcag cgagatgtaa cccggcacga
      541 gcggcaacac gcacggcgag agaaacgaga gtacgcccgc tgcaaaagaa ataagaatgt
      601 taatgccctg atcgcccata gctttactcg tcaaccaatt tctgaatcat tttgcccagc
      661 gactcgattt cttcgtcgct ggctccggga gagatgtaac gtaacactcc tttgcggtcc
      721 aggagaaacg acatcgggat ggaattcacg ccatagttta attcattgac gtctttctcg
      781 ccgaccacga tcccgtaagg cagcttgtac cgcttcttga agtcgcgcaa aaaggcgagc
      841 tcttcacccg gcgtcatcgg ctcctgtccg ccgtggccgt agtacttcgt gatcccgaga
      901 atcacgagcc ctttgtcttt gtacttctgg tgccagcgtg tgagctgcgg cagcgtgacc
      961 tggcacggtc cacaccaatg cgcccagaag tcgagtagga cgatcttgcc gcgcagatct
     1021 gaaagtttca ccggtgcttg atcgagccat tgtgtgccgg tgatctcggg cggcaacgct
     1081 gtcgaaggct catcgaaagc cttctcgatg tcgaactcgg gatcgagcgt gaacaaacgg
     1141 aacgtcacca gcttgtagag atttcctgaa ggcagttcga tcgacaaccg gcgcaggtct
     1201 tcgagtgtct cgatggcttt ggctttttga ttcgttttcg tctgcgcgtc ggccaatagg
     1261 aagccggact tgagcagcat gtcgtcgcgg cgaaaggtct cttttctgtt tgttttgctg
     1321 aactctttcg acgctgcgag catttgctgc gcgtgcgcgg ccatcgctgg gtagtctttg
     1381 gcgcggaaat acgcgtcggt cagcaggagt tccatgcgat agcgctcgtc ggcgttttgc
     1441 ggtttgtgac gcgcgtacgc ttcgacggcg gctttggctt cgtcgagcag gttttttttg
     1501 actgcataca acacgacgac gtttcgcgcg gcttgtgcct gtgtgccgtc gggatcgctt
     1561 ttcagcagcg aacgcatcgt ggtgagtgct gcgtcggcgt cgccggcgag atgatgcagc
     1621 atgccgaggt agtaaagatc gtcatttgag agcggcgaac gcgctttcag tatgccggcg
     1681 ttcttgaccg cgagttcctg ctgttccttc tttgtttgcg cttcgagctt gggatcgtag
     1741 ggcagcttct tcttgttgaa ttcctggtag cgtctgccga gatagccgtt tgcgtcttcg
     1801 tacaacgcct gcgccgggcg agtctcgggc ttggccgggt cggcgggctt ggcggcgttg
     1861 agatcctgtt gcgccgttag agacgcgggt agcagtagca acagaagaaa aagcttggca
     1921 aattgcattg tggcttaact tacgtgcgcc agatcgaaac gattggggct gaaagcagcg
     1981 agcagcggcg aaatgcggcc ggctacgaca gcttcggcaa tcaactctcc ggtgacgggc
     2041 gcgagtagga ttccgttccg gtaatgtccc gttgcataaa agagcccgtc aatttcatca
     2101 caaggcccca gcacaggcaa accgtcagcg gcgcgcggac gcagaccgga ccatgtatct
     2161 gttattggga ggtttgaaat ttggggcgag atttcgtgcg cgttggctag gatgtggctc
     2221 acgccgccgg cggtgacttg tttggtgaaa ccggcgtttt cgctggtgga accggcgagc
     2281 aggcggccgt cgtggcgggg gacgagatag ccgcgcgggc tgtaaattat gtgtcttgtg
     2341 agctggggtt tcgcgtcgaa acagatcatc tggccgcgta cgggttcgat ttttggcgtg
     2401 tgggcgttat caatcgtgct cgaccaactt ccggcagcaa caacgaccgt ctgacaactc
     2461 acaaagccgc gcgacgtctg gacgcctagt acccgacccc gctctatagc gatcgactcg
     2521 acgtttgtct cagtggcgac gtgcactttc aatttatcga cactgttcac gagcgcattc
     2581 agcagtcggc ggttctcaac ctgaacatcg cgcggaaaac gcagcgctcc ctcaacagtt
     2641 tcagccacgc acggctccaa ctctctcgct tccgccgccg tcaacttctc aacaaccaat
     2701 cccgcctttg attgccactc gtaccgcttc tcgatctcat ccacatccct ttcactgagc
     2761 gccacgtaaa gcgtccccgt cgaatccagt tcaacgtcaa cacccgtctc ttcacgtagc
     2821 gccgccgcaa agtctttata aagctctcga ctccgcgatg cgagttcaaa aaactcgtcg
     2881 cgcgcattcg cttccgcttg cggcgcgaga atcccacccg ccgcaaacga cgcctcagcc
     2941 cccaaagccg cgcgctcaac caggcacaca tcgcgcacgc cacgctgcgc aagcgcgcgc
     3001 gcaatcgtga gcccgatgac gccaccacca acgatcacaa cctctgcagt tcgatatttg
     3061 tcagtcacgg tccaaagcct tattcttgtt cgaacatgca tgctatcaca ctgagtcctg
     3121 gcgacggcat cggccccgaa gtcgcttcca acgtagtccg catcatcgaa gcttccggcg
     3181 ttgaaatcca atgggaaacg cattacgcgg gcgcgcaggc gctcgaaaaa ttcggcaaca
     3241 cactgccgca ggagctgctc gattcgatca ttcgcaacaa ggtcgctttg aagggcccga
     3301 tcaccacgcc cgtcggtaaa ggcttcacgt cagtcaacgt cggcttgcgt aaaacgctcg
     3361 atttgtacgc gaacttgcgg cccgtgcgcg cgttgccaaa cgtgccgtgc cgttatccgg
     3421 aactcgacct cgtcgtggtg cgtgagaata ccgagagctt gtacgcgggg ctcgagcacg
     3481 aggtcgtgcc gggtgtcgtc gagagtttga agatcatcac ggagaaagcg tcgacgcgca
     3541 tcgcgcgctt cgcattcgag tacgcccggc gcgaaggacg caagaaggtg acggcggttc
     3601 acaaggccaa catcatgaag atgtccgacg gtctcttcct caactgcttc cgccgcgtgg
     3661 ccgcggagta tccggaaatc gaagccgacg acaagatcgt cgacaacgcg tgtatgcaac
     3721 tcgtgatgcg ccccgaacag tttgacatca tgctgctcga gaatctgtac ggcgacatcg
     3781 tttcggatct ctgcgccggt ctcgttggcg gtctcggcct cgttcccgga gcaaacatcg
     3841 gggagaaagg cgcgatcttc gaagccgtac acggctcggc gcccgacatc gcagggcagg
     3901 gcatcgccaa cccaacagca ctcttacaat cgggaatcct gatgctccgc tacatcggcg
     3961 agcgcgacgc cgccacgcgc atcgaaaacg ccatgctagc agtctttcag gagggcaaag
     4021 tccgcacccg cgacatcggc ggcaccgccc gcaccgccga gttcgccgac gcgatcattc
     4081 agaagatggt atagggacct attcggtcct ataagaccta ttacacgctt cgcatgaaac
     4141 actttcttac catgctgctt gtgttgccgc tgtgcgtgtc gatcgcgcgg gcgcaggagt
     4201 ttacggtggc gcagtcgagg gtttttgcgc cgcagaataa gaaggtgctg ttgttgaaag
     4261 atggggcgag cgacaggaag attattttgt tccagacaaa cctgcgtgtg aacaccgatg
     4321 ggtcgccgct ctcgtatcat ccgcaggatc cgcgcgggag gacgaaggcg ctcaataata
     4381 tttgtaatgg gattgccgtg aggcgcgttg gttcaaacag caatctgtgt ttcaccgctt
     4441 tcggcgaggc gattcgcgtg tttgagaagt ttcgcgattc caacttccaa accgttccgc
     4501 ccggctttcg catcacgtgg aacaaagtcc tcgccaccgt gcaggaaaac ggcaaagagg
     4561 ttccgtgcgt cttcaagtcg ggagagttca agggctactt cggttcgctc accgcactaa
     4621 gaaatggtct caccaccgat agaggcgaat gtgaagtcaa cgaccaggtg aacccgatga
     4681 ctgtccccgc ccttgtcctc gctggcggac aacatccggt gaaagacttc ggcgcgaaag
     4741 tcggcgatct gttgatcgcc tacaacccac gcacacaact cttcacaaca gccatcatcg
     4801 gcgacagtgg accaccagac aatctcggcg aggggtcagt cgcactcaac atgaaactcc
     4861 tcggcacaac tacaccacca acgaacaaac aggaaacctt ccaactctcg atcgagaaca
     4921 ccaaagtact gattgcgatc attcctggtt cgcgtctctt caacgtggcg aaaccataca
     4981 ccgctgacaa catcaatcaa cgcatcgacg cgtggcgcgc tgaagcaggc ttcactacgc
     5041 ccgaaaaact catcgaattg atgaaggcgt ttcaaccacg tttgaattga acaaaagcac
     5101 atagtggaac gctggttgct cctcaaacac tcgtgatcag aatcatcaag gtatgaggag
     5161 gttaagatgg gattaccaaa caacgatgag atggaaggaa aatgggacca ggccaaaggc
     5221 agagtgaaag aaggactcgg cagagcgctc gacgatgacg atctcgaagc cgagggcgca
     5281 gcagatcgcg ccggcggcaa catccaggag ggctacggta aagcgaaacg caatatcggc
     5341 gaagcaatcg aagatgtcgg tgacgccatc aagcgttaag tagaaataat tggctagcaa
     5401 ccaaaagcac ggactacatg gattccatgt agtccgtgtt tttttgtgtg acgttattca
     5461 gtgcggacgt gctcagcacc aagctcttca agcagctctt cgatccgatt cacatcttcg
     5521 tcgtcgcgac cgagaacacc gatcaaaatt ccgccgccgc gaattccagc ttcgtacact
     5581 ttcgcgcgat attcaggaat accagcgcca atcagcgcgc caatcaaacc acccgccgca
     5641 ccgccggcgc cgagtcccgc caacgccgcc gcgattggac cagcgataac gagattcaaa
     5701 cccggcagaa acagagtcga accgactgcc gcgatcgccg cgagcaccgc gccaaccgtg
     5761 ccgcccgcgg cagcgccaat tccgagtcca tcggctgcat gtgtgcgcga ctgcaacgca
     5821 aaatgcttcg agcgcgtctc gtctgacatg agcacgctga tgtcgtcacg actaaatccg
     5881 cgtttcaaaa gggcgtccac cgcagcctcg gcagccacct tgctcttaaa aagtccggtt
     5941 actaatttcg cattatcctt atcagccata aacttcctcc cccaaacgca aagttccgct
     6001 ttaggcacac aacggcaacc gttgtgccga ctgcacaccc gcgcgaaccc gtcaaattgc
     6061 cgtgtaattt gaaagcactg aggg
//
LOCUS       DASWTX010000541         3397 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_223026, whole genome shotgun sequence.
ACCESSION   DASWTX010000541 DASWTX010000000
VERSION     DASWTX010000541.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3397
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223026"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2023
                     /locus_tag="VGD38_08280"
     CDS             <1..2023
                     /locus_tag="VGD38_08280"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LamG domain-containing protein"
                     /protein_id="HEY0728048.1"
                     /translation="FGKGRAGANIVGETANNSTNLGSSSFTVEVWFKGGPSVTRPYTL
                     VGKEDQNAGQFQVPEYTLRLLPSGGLRAFLFNANATLSWRADMAGRVFDPVAGRYLPT
                     MNDGQWHYVAMVADRSTGKLSLYADGVERASGTIPANFGAMHSTNNPLRVGHWAWVEE
                     PGGTGPEAFPGVIDEVRIQNVARTAAQIADTWYGTNSEGGAPSNMTAALSSSAKSFKN
                     QKLIVNSIAPALVPRDRTSRQPLETKLALQGANLSGITARVVRDGQPLDSVGTRVENT
                     TDSQAQLAVAIAPNTPLGPAQLVLSKQDHGDVAVDIRVIEPSEFALEADTVGLWHLDE
                     RDNGVAHLLDAGQNAIHLTSARASRVTDGRFGAGRELLRATADANNTALSPGTSSFTI
                     EGWVKAPTLGRDYVLVGKETSNGQNTEFTLKALASGALRAEIYDTAGVVWQAESVAAT
                     LTDDQWHAFALVVDRETNSLSLYVDAQIQMFVPAPAGFGAVRNLGQPLQLGSFDADAS
                     GNGPEEFPGVLDEIRISSTAHKPEKIAVDFFGNDEPKVTFVRPPVVRKGAGPIEVTLS
                     GYGLIGATVLPDQPGVTATVISSTLTSIRLSLAVYDFVPAGPASLLFRDVLGRGFSVE
                     FTVEERPLENRVGVSVSPPDLPPNRFKPPRGSSFRSRLNQHVKRVGGQR"
     gene            2020..>3397
                     /locus_tag="VGD38_08285"
     CDS             2020..>3397
                     /locus_tag="VGD38_08285"
                     /inference="COORDINATES: protein motif:HMM:NF020700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728049.1"
                     /translation="MNQAKAFSLKHVLVLFLCYCLVLQPNAAFAGPVGLSRATQPTSK
                     NNAGTPGDFAGSAWGLLDHVLSFFESSEAPPAVVVPVDAAISRKVPNLSNGKVEGNLR
                     VYTGQSFSFEGGFVVTNETYVVGTPNVTVASGATFNAGTVDESGSADPAGYTIAINGT
                     SRLLGKIHRRSDPLAFPADIPASIPQPTGTRVVNVNTAADLASIGDWSTVKDLHVSKS
                     GESITVPAGNYGSFSVTGNSRLNFTGGVYNFSEGLTFAGNATIKVTGVTTINVGSSAA
                     INNTGVLIGENTLPGDIKLNVLGPALTITGNATIKALVRVPNGTATVTGSSLVRGQVI
                     ADKLEILGNGQVIGDTSSNAAGDTTPPTVTITSPANEAPIDAPSVTVTGTAIDPGVGA
                     SGVASVLVNNIEATYNATTSNWTANVALTFGPNTITVRATDVAGNTSPNQEIVVTRPQ
                     DTTAPTVAI"
BASE COUNT          710 a         1045 c          999 g          643 t
ORIGIN      
        1 gttcggcaaa ggacgcgcgg gcgcaaacat agtcggcgag accgcaaaca actccaccaa
       61 tctcggcagc agcagtttca ctgttgaggt ttggttcaag ggtggtcctt cagtcacgcg
      121 gccttacacg cttgtaggca aagaggatca gaatgccggt cagttccagg tgccggaata
      181 tacgttacgc ctactgcctt cgggaggctt gagagctttc ctattcaacg caaatgccac
      241 cctttcctgg cgggcagata tggcgggccg cgtctttgat ccggtcgccg gccgctacct
      301 acccacgatg aatgacggtc aatggcacta cgtagccatg gtcgccgatc gcagcaccgg
      361 caagctgagc ctttatgcgg atggtgtcga gcgagcttcg ggcacgatcc cggccaactt
      421 cggcgcaatg cacagcacaa ataatccgct gcgcgtgggc cactgggcct gggtcgaaga
      481 acccggcgga acgggacccg aagcgttccc gggcgtgatc gacgaagttc gcattcagaa
      541 cgtcgcgcgc acggcggcgc agatcgcgga cacgtggtac ggcacgaaca gcgagggcgg
      601 ggcgccgagc aacatgaccg cggcgctaag cagttcggcc aagtctttca aaaaccagaa
      661 actgatcgtg aactcgatcg cgccggctct cgtgccgcgt gaccggactt cacgtcaacc
      721 actcgagacc aaactcgcgc ttcagggtgc gaacctgagc ggcattactg ctcgtgtcgt
      781 gcgtgacgga caaccgcttg actcggttgg aacgcgcgtc gaaaacacga ccgactcaca
      841 agcacagctc gcagtggcta tcgctccaaa cacgccgctt ggtccagcgc aactcgtcct
      901 ttctaaacag gaccatggcg acgttgcagt tgacattcgc gtgatcgagc cgagcgagtt
      961 tgcgcttgaa gcggacaccg tcggactgtg gcatctcgac gaacgcgaca acggcgtggc
     1021 ccatctgctc gacgcaggtc aaaacgcgat ccacctgacc agcgcgcgcg cgtcgcgtgt
     1081 taccgacggc aggtttggcg ccggccgtga gttgctacgc gcaaccgcgg acgcgaacaa
     1141 cactgcgtta tcaccaggaa cgtcgagctt cacgattgag ggttgggtga aagcgccaac
     1201 gctcggccgc gactacgtgc tcgtcggcaa ggagaccagc aacggacaga acaccgagtt
     1261 cacgctcaag gcgctcgcgt ccggagccct gcgtgccgag atttacgata ctgccggagt
     1321 cgtgtggcag gccgaatcag tcgccgcgac gctgaccgac gatcaatggc atgcatttgc
     1381 tttagtcgtc gatcgcgaaa ctaactcgct gtcgctatat gtcgacgcgc agatacagat
     1441 gttcgtgccg gcgccagcgg gtttcggagc ggtgcgcaac ctgggccagc cgcttcaact
     1501 cggcagcttt gacgccgatg cgagcggcaa tggaccagaa gagttcccgg gtgtgctcga
     1561 cgaaatccgc atctcttcga ccgcgcacaa accggagaag atcgctgtcg acttcttcgg
     1621 caacgacgag ccaaaggtca cgttcgttcg tccgcccgtt gtcaggaaag gcgcggggcc
     1681 gatcgaggtc acgctttcag gctatgggct gatcggcgcg actgtgctcc ccgatcaacc
     1741 cggcgtgact gccaccgtca tttcatcaac cttaacaagc attcgactct cgctcgccgt
     1801 ctacgacttt gttcctgccg gacctgcatc gctcctgttc agggacgtgc tcggccgagg
     1861 ctttagtgtc gagttcaccg tcgaggaacg cccgctcgaa aaccgtgtcg gcgtttccgt
     1921 cagtccgcct gatctcccgc cgaaccggtt caaaccaccg cggggaagtt cgtttcgatc
     1981 tcgactgaat cagcatgtga aacgagtggg aggtcagcga tgaaccaggc gaaagcattt
     2041 tccttgaaac acgttttggt cctgttcctt tgttactgcc tggtgctgca gccaaacgcg
     2101 gcgtttgccg gtccggttgg tctcagccgc gccacgcaac ccacgtcgaa gaacaacgcg
     2161 ggaacgccag gtgacttcgc gggcagcgcg tggggtcttc tcgatcacgt gctcagtttc
     2221 ttcgagagca gtgaagcccc gcccgcggtc gttgtgccgg tcgatgcggc catctcgaga
     2281 aaagtcccga atctctcgaa cggcaaagtc gaaggcaacc tgcgggttta cacgggtcaa
     2341 tcgttttctt tcgaaggcgg ctttgtagtc acgaacgaaa cgtacgtcgt cggtactccg
     2401 aacgtgactg ttgcttcagg cgcgacgttc aacgccggca cggtcgacga atcgggcagt
     2461 gcggatcccg ctggctacac gatcgccatc aacggcacct cgcgcctgtt aggaaagatt
     2521 catcgccgct cagatccgtt ggcttttccg gctgacatcc cagcgtctat tccgcaacca
     2581 acgggcacgc gtgtagtcaa cgtcaacacc gcggccgatc tcgccagcat cggcgattgg
     2641 tccacagtga aagatctgca tgtcagtaaa tccggtgagt cgatcaccgt accggcaggc
     2701 aactatggct cgttcagcgt aaccggaaat tcccggttga actttaccgg cggcgtttat
     2761 aacttcagtg aaggattaac ttttgccggt aacgccacga tcaaagttac cggcgtcacg
     2821 acgatcaacg tcggttcatc ggccgcgatc aacaacactg gtgtgctgat cggcgagaac
     2881 acactgcccg gcgacatcaa gctcaacgtg ttgggcccag ccctgacgat aacgggcaac
     2941 gcaactatca aagcgctcgt gcgcgtgccc aacggcaccg ccaccgtgac cggatcgtcg
     3001 ctggtccgtg gacaggtcat cgccgacaag ttggagattc tcggcaacgg tcaggttatt
     3061 ggcgacacgt cgtcgaatgc ggccggtgat acaacgccgc cgacggtcac gatcacgtcg
     3121 ccggccaatg aagcgcccat cgacgcgcca tcagtaacgg ttacgggaac ggctatcgat
     3181 cccggcgtgg gcgcgagcgg cgttgcgtcc gtcctggtca acaacattga ggccacttac
     3241 aacgcgacga cctccaactg gaccgcgaat gtcgctctca ccttcggacc caacacgata
     3301 acggttcggg cgactgacgt tgcgggcaac acttcgccca accaggagat cgtggtcact
     3361 cgcccgcagg acacaacggc gccgacggtg gcgatta
//
LOCUS       DASWTX010000542         1898 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_357009, whole genome shotgun sequence.
ACCESSION   DASWTX010000542 DASWTX010000000
VERSION     DASWTX010000542.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1898)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1898)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1898
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_357009"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..416
                     /locus_tag="VGD38_08290"
     CDS             <1..416
                     /locus_tag="VGD38_08290"
                     /inference="COORDINATES: protein motif:HMM:NF014439.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728050.1"
                     /translation="IDVKGRLKVPTEFRRLMEEKHGKEFYITSLNGDCVRIYPLPEWE
                     SIEQRLSLLPSMDPARRKFLDRTNYYGQQATLDNQGRLLIHPLLRKSAEVIGDVAVLG
                     YLTHLEVWELDKFRARMLADPYTEEDEAAIARLGI"
     gene            441..1457
                     /gene="rsmH"
                     /locus_tag="VGD38_08295"
     CDS             441..1457
                     /gene="rsmH"
                     /locus_tag="VGD38_08295"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: protein motif:HMM:TIGR00006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEY0728051.1"
                     /translation="MKNKAKHKEQKVFERDHGAVEMAALLGGIGAPHRPVLLKETLNF
                     LVPERGGLFVDCTVGLGGHSEAILNSSERARVLGMDLDPEALAYSRQRLASFGERFRA
                     YQANFRELADVLNRAGERDPNGILVDLGVSSLQFDSPERGFSFRFDAPLDMRMDPTSG
                     ATAADLLQQLPESEIARIIFEFGEERFSRRIARRIVERREQGSPVATTKELADLVASA
                     VGGGKRQQIHPATRTFQALRIAVNNELEGLGSFIELAVDVLAADGRFVGISFHSLEDR
                     ILKQELRRLSGHCQCPPRLPVCSCGAREVVEVLTRRPVAPTAREIEENPRARSAKLRA
                     ARKL"
     gene            1473..1802
                     /locus_tag="VGD38_08300"
     CDS             1473..1802
                     /locus_tag="VGD38_08300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728052.1"
                     /translation="MKRFPEHQLNAKVRRTRDATALSRLALLLFCGLVLAGGFVFAAK
                     QHFAAVQYGYESEHLRIERKKLLEENQRLALDKERVTAPDKLEPAARRLGLKPARPGQ
                     ITTLGNK"
BASE COUNT          413 a          504 c          553 g          428 t
ORIGIN      
        1 gaatcgatgt caaaggtcgt ctcaaagtgc cgaccgagtt ccggcgcctc atggaagaga
       61 agcatggcaa agagttttat atcacgagtt tgaacggtga ctgcgtgcgg atttatccgc
      121 tgccggagtg ggagtcgata gaacaaaggc tttcactgct gccgtcgatg gacccagccc
      181 gacggaagtt ccttgataga acgaactatt acggtcagca ggcgaccctc gataaccagg
      241 gacgtttgct gattcacccg ttgcttcgga agagcgcgga agtaattggc gacgtggccg
      301 tgctcggtta cctgacgcat ttggaagttt gggaactcga caagttccga gcgcgcatgc
      361 tggcagatcc gtacaccgag gaagacgaag cggcgattgc tcgacttggt atttagcgtg
      421 aacttggtac tttgtacttt gtgaagaaca aagcaaagca caaagaacaa aaggtctttg
      481 aacgagatca cggggcggtg gagatggctg cgctgttggg gggcattggc gcgccccatc
      541 gccccgtgct gctgaaagag acactgaatt tcctcgttcc tgaacgagga ggtctctttg
      601 ttgactgcac ggttggcctt ggcggacaca gcgaagcgat tctgaattcc tctgagcgtg
      661 ctcgtgtcct cgggatggac ctcgatccag aggcacttgc ctattcgcga caacgactcg
      721 cttccttcgg cgaaaggttt cgcgcttacc aagccaactt tcgcgaactg gcagacgtgt
      781 tgaatcgcgc aggcgaacgc gatcccaacg ggattctcgt agacctcggc gtttcttccc
      841 tccagtttga ttcccctgag cgcggtttta gttttcggtt cgacgctccg ttggacatgc
      901 gcatggaccc gacgagcgga gcgacagccg ccgatcttct tcagcaactt cccgaatcgg
      961 aaattgccag aatcattttt gaattcggcg aagagcgatt ctcccggcgc attgctcgtc
     1021 gcatcgtcga aagacgtgaa caagggtcgc cggtagctac cactaaggag ctggccgatc
     1081 tagtcgcgtc ggctgttggt ggtggtaaac ggcaacagat tcatccggcg acgcgaacgt
     1141 tccaggcgtt gcgcatcgcc gttaataacg agctcgaagg gttaggtagt tttattgaat
     1201 tagcagtcga tgttttagcc gccgatggcc gctttgtggg aatcagtttc cactcgctcg
     1261 aggatcggat cctcaaacag gaattgcgac ggctgtcggg tcactgtcaa tgtccgccac
     1321 gtttgccggt ttgttcgtgc ggggcgagag aagtggttga agttttaact cgccgtcccg
     1381 tggcgccaac cgctcgcgag atcgaagaga acccgcgagc acgcagcgca aagttacgag
     1441 cagctcgcaa actatgacaa ggggtagcaa ctatgaaacg ttttcccgag caccagctta
     1501 acgcgaaggt tcgccgcaca cgcgacgcga cagcgctctc ccgtttggcg ctgctgttgt
     1561 tctgcggtct ggtactggcg ggtggttttg tttttgccgc caagcaacac ttcgctgccg
     1621 tccaatacgg ttatgaaagc gaacacctcc gcatcgaacg caaaaaattg ctggaagaaa
     1681 accagcgact tgcgctcgat aaagaacgtg tgacggcgcc tgacaagctg gagcccgctg
     1741 ctcggcgctt gggactaaag ccggctcggc ccggccaaat tacgaccctt ggcaataaat
     1801 gatgctggca cgccttgttg cccaaacaaa gtccagaccg gatgtatcgc ccagccgcgc
     1861 gcttctcgtc gcggctttta ttggcttctg gatgcttg
//
LOCUS       DASWTX010000543         2016 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_291361, whole genome shotgun sequence.
ACCESSION   DASWTX010000543 DASWTX010000000
VERSION     DASWTX010000543.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2016
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291361"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..237
                     /locus_tag="VGD38_08305"
     CDS             <1..237
                     /locus_tag="VGD38_08305"
                     /inference="COORDINATES: protein motif:HMM:NF012360.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728053.1"
                     /translation="DYVNIYSHSHDIYDIHKVSTPETRIGNGVRLTYHSTVLAGIQVG
                     DNAMIGTNAVVTRDVEPNHIVVGIPAKTAKVKDR"
     gene            678..1736
                     /gene="pilM"
                     /locus_tag="VGD38_08310"
     CDS             678..1736
                     /gene="pilM"
                     /locus_tag="VGD38_08310"
                     /inference="COORDINATES: protein motif:HMM:TIGR01175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus assembly protein PilM"
                     /protein_id="HEY0728054.1"
                     /translation="MFKKGSGKKNLVGLDIGSSSVKAVELGKKGSSLQLLNLGFENLQ
                     TDTIVDGQIMELNNVSNVISQIFSEHQIRTTRVCAGVSGHSVIVKNIVLPQMSSEELQ
                     ESFSWHAEEHIPFDIADVNLDYELTSRSEDALHVLMAACKSDKIANVKQAIQLAGKQP
                     VIIDVDAFALQNCYEINYRPRPGEIVALLNIGAATMNINILNGTRSVFARDASVGGSQ
                     YTSLLQRELGLSFEQAESVKRGMPLPEGTEPRPIQPIIETVSEALALEVKKTVDFYRA
                     TAQDEAGIQKILLAGGGSKLPGLADFLGQKFEIPVEVFDPFRQIEVDSRKFDPDYMRE
                     IVPEMAVAVGLALRGVEA"
     gene            1733..>2016
                     /locus_tag="VGD38_08315"
     CDS             1733..>2016
                     /locus_tag="VGD38_08315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728055.1"
                     /translation="MIKVNLLESVTDRPQGVAAVEDKVASPRVQTALLALTVFGLMTL
                     GMGYDYVSANMAYTAAQKELENQNRINQQMLAVQKEQKELEKKTEEIKAR"
BASE COUNT          509 a          582 c          534 g          391 t
ORIGIN      
        1 gactacgtca atatctattc ccacagtcac gatatctacg acatccacaa agtctcaaca
       61 cccgagacgc gcatcggcaa cggcgtccgt ctcacctacc actccaccgt tttggccgga
      121 atacaggtcg gcgacaacgc aatgatcggc accaacgccg tcgtcacacg agatgtggaa
      181 ccaaaccaca tcgtagtcgg aattcccgcc aaaacggcca aagtcaaaga ccggtaaacc
      241 gcgagctgaa agttggaaca actacgccgt tgttccagaa accagccttt gcgcgcccgc
      301 cgttcagacc ttagtctctc gcctgcaaca agttaaacag tgaaaaataa caattgacac
      361 tgtttggccc attaaggtac tctcactcag gtcgacggcc agcgcttgcc gttgattggg
      421 tgcctacctg gtttcaacag cggtcagtcc cgcgatgagc ttaaattcct gccctaccta
      481 atctccgcag ccgttttgtg ttgaggcccg cccgatatga acaaccttac cgacaaaggg
      541 accattaact tgatccgaat gaactctaca gccacgacga aagtcgtcaa acgacaactg
      601 ccccgcgcgc gaaaggcccg cgttcgtctt cgtcagcaaa acaaacttcg cgctgccgcg
      661 gtgaggaata actaatcatg ttcaaaaaag gctccggcaa aaagaacctc gtcggtctcg
      721 acatcggctc cagttccgtc aaggcagtag agctcggcaa gaaaggatca agcttgcagc
      781 tcctgaacct cggcttcgaa aaccttcaga ccgacacgat tgttgacggc cagatcatgg
      841 agctcaacaa cgtctccaac gtgatctcac agatcttcag cgaacaccag attcgcacca
      901 ctcgcgtttg tgccggcgtc agtggtcact ccgtgattgt gaagaacatc gtgttgccgc
      961 aaatgagctc ggaagagttg caggagtcgt ttagctggca cgccgaagag cacatccctt
     1021 ttgacatcgc cgacgtgaat ctcgattacg agttgacgag ccgctctgag gacgcgttgc
     1081 acgtgctcat ggcggcgtgc aagagcgaca agattgcaaa cgtgaagcag gcgattcaac
     1141 ttgccggcaa gcagccggtg atcatcgacg tcgacgcctt cgcgttgcag aactgctacg
     1201 agatcaacta tcgcccgcgt cccggcgaga tcgtcgcgtt gctgaatatc ggcgcggcca
     1261 cgatgaacat caacatcctg aacggaacgc gatcggtgtt cgcgcgcgac gcttcagtcg
     1321 gcggcagcca gtacaccagt ctgctgcaac gagaactcgg tctcagcttc gaacaggcgg
     1381 agagcgtgaa gcgtggtatg ccgttgcccg aaggcaccga gccccgcccg atccaaccga
     1441 tcattgaaac cgtttccgaa gcgctcgcgc tcgaagtcaa gaagaccgtc gacttctatc
     1501 gcgccactgc ccaggacgaa gctggcatac agaagatcct gcttgccggc ggcggttcca
     1561 agcttccggg cttggctgat tttctgggac agaagtttga gatcccggtc gaggttttcg
     1621 atcccttccg gcagatcgaa gttgattcga gaaagtttga tccggactac atgcgagaaa
     1681 tcgtgcccga gatggcagtc gccgtcggtc tcgcgctgag aggagtggaa gcatgatcaa
     1741 ggtaaacctg ctcgagtcag ttacggatcg gccacagggt gtcgcggcgg ttgaagacaa
     1801 agtcgccagc ccgcgtgttc agacagcact gctcgcgctg actgtgtttg gtttgatgac
     1861 cctcgggatg ggctacgact acgtcagtgc aaacatggcc tacaccgcgg cgcaaaaaga
     1921 actcgagaac cagaaccgga taaatcagca gatgctcgcc gtgcaaaaag agcagaagga
     1981 actcgagaag aagactgaag agatcaaagc gcgtat
//
LOCUS       DASWTX010000544         2046 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_201321, whole genome shotgun sequence.
ACCESSION   DASWTX010000544 DASWTX010000000
VERSION     DASWTX010000544.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201321"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..684
                     /locus_tag="VGD38_08320"
     CDS             <1..684
                     /locus_tag="VGD38_08320"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:NF014200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004185 - serine-type carboxypeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HEY0728056.1"
                     /translation="MGGVGVGPVAPAAKLLLTQKSSRLVDILKVLLCYSNNFMADRIG
                     DALGGPESVRQQLITQLNLGPEDLRIATLSGLGVNRISPRVMMKVYRALLAELQQHRL
                     TPSAIMPVAGIDPGTLEDRFTGPAWRGSVIAKTGTLLRTDGGASSLVGQMRAANGETL
                     FFVIMNQRGSVSRFRENQDYLVMLVQNTRGGPKAFDYKPSLLTMQLSQTESVLSTSDE
                     FEPPSKSQQ"
     gene            1010..>2046
                     /locus_tag="VGD38_08325"
     CDS             1010..>2046
                     /locus_tag="VGD38_08325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728057.1"
                     /translation="MTAKPGIYRCKKQRNQAGFSMMQTLIVLGVVSVISGLAFLGITE
                     ARQRIRLTNSSRLLASYVEKARVDSVRRHPMNAADMAGVEVLNGTTYRVKMDFDGNGT
                     VETRDITLDDGVVFATDPIALAFDWRGRLVDLPLTEIKVSIAMQWGNDPNDQRIVDVT
                     RSGDVTIDSDVYLDDVPNVNVNVGGLTGIDSGSTVNGNNNPNPTPTPTAEPTPDVQPT
                     PIDAEPTPTPPIGVEPTPTPTPTPTATPTPSPEASVSPTPNGNPSPTPTPCTVQVTTS
                     PSPLSFSKHSSGTVSFTVNPSGTVTFTSGPNNLGVTQASGNTFNISSLNNTRGNFTLV
                     FNTPCGSHNVSV"
BASE COUNT          464 a          641 c          561 g          380 t
ORIGIN      
        1 atgggcggcg ttggcgtcgg acccgttgcg ccggcggcga aacttttgtt gacgcagaag
       61 tcgagcaggc tggtcgacat tctcaaggtg ctgctctgct attcgaacaa cttcatggcc
      121 gatcgcatcg gcgacgccct cggcggtccg gagtcagtgc ggcaacagtt gattactcaa
      181 cttaacctcg ggcctgagga tctgcgaatc gcgacgttga gcggcctggg agtgaatcgt
      241 atttcgccgc gcgtgatgat gaaggtctat cgcgcgttac tcgccgagtt gcagcagcat
      301 cggttgacgc catcggccat catgcccgtc gcgggtatcg atccgggcac actcgaagat
      361 cgtttcaccg gtcctgcatg gcgaggcagc gtgatcgcga aaaccggaac gttgttgcgc
      421 accgacggcg gagcgagttc gctcgtcggc cagatgcgcg ccgcaaacgg cgagacgctg
      481 ttctttgtga tcatgaacca gcgcggcagc gtcagccgct tcagagagaa ccaggattac
      541 ctggtcatgc tggtgcagaa tacgcgtggt ggtccaaaag ccttcgacta caaaccttcg
      601 ctgctgacga tgcagctctc gcaaaccgaa agtgttctct cgacgagcga cgaattcgag
      661 ccgccgtcga agtctcaaca ataaaaagct gcgcctcggc aatccgaaga tcaccgagac
      721 gctttgtcgt ccaactgcaa ttgcggcgtg cggcaccgca acctcagcgg acgattccta
      781 gtcctcgttc ccttacctca cgaaataaac gatcaaagcc tttcgagttc cgcagaaacg
      841 ttgtgaaatt cacttccact gcctgtcact atcggtaaca cgaacggcct agcctctttg
      901 cacggcccaa taaaaacacc cgtttttaag gcacattccc ggcggcatgg acgttgcaca
      961 aagcaccgtg ggaagttctg ccgaaccttc agttccccac ggaggagtaa tgactgccaa
     1021 acccggaatc taccgatgca agaaacagag aaaccaagcc ggcttctcga tgatgcagac
     1081 cctgatcgtg ctcggcgtcg tgagcgtcat atcgggattg gcattcctgg gtatcacgga
     1141 ggcgcggcag cgcattcgcc tgaccaactc ttcccgcctg ctcgcgagct acgtggaaaa
     1201 ggcccgcgtc gattcggtgc gccgtcaccc gatgaacgcg gcagacatgg cgggcgttga
     1261 agtgctcaac gggaccacgt accgcgtcaa gatggacttc gacggcaatg gcactgtcga
     1321 aacaagagac atcacgctcg acgacggcgt tgtcttcgca accgacccga ttgcgttggc
     1381 gtttgactgg cgcggacgtt tggtcgatct gccgctgacc gaaatcaagg tcagtatcgc
     1441 catgcaatgg ggcaacgatc caaacgacca gcgtatcgtc gacgtcacgc gctccggcga
     1501 cgtcacgatc gatagcgacg tctacctcga cgacgtacca aacgttaacg tcaacgtcgg
     1561 cggactaacc ggcatcgatt ccggttcgac agttaacggc aacaacaacc cgaacccgac
     1621 accgacgccg acagcggaac caacgccgga tgttcagccg acgccgattg acgccgaacc
     1681 gactccaaca ccgcccatcg gagtcgagcc aacgccgaca cccactccga ctccgactgc
     1741 gactccaaca ccgtcgccgg aagcaagtgt ttcgccgacg cccaacggaa acccgtcgcc
     1801 gacgccaaca ccgtgtacgg ttcaggtgac gacgagtccc agcccgctgt cgttctcgaa
     1861 gcacagcagc ggcacggtta gcttcactgt taacccgagc ggaacagtca cgttcaccag
     1921 tggtccaaac aacctcggcg tcacccaggc aagcggcaac acgttcaata tctcgtcgct
     1981 gaacaacacg cgtggcaact tcacgcttgt cttcaacacg ccttgcggtt cgcacaacgt
     2041 cagcgt
//
LOCUS       DASWTX010000545         3294 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_93953, whole genome shotgun sequence.
ACCESSION   DASWTX010000545 DASWTX010000000
VERSION     DASWTX010000545.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3294
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93953"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>3294)
                     /locus_tag="VGD38_08330"
     CDS             complement(<1..>3294)
                     /locus_tag="VGD38_08330"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEY0728058.1"
                     /translation="GARAVVFSPHLPSLAELAQFINRTQITTMWLTSGLFHQLVDAEV
                     GPMPALRQLLAGGDALSPVHVKKALEQWDNCRLINGYGPTEATTFASAYDIVPDFPGP
                     SVPIGRPISNTTNYVLNNLQLAGVGERGELFIGGIGVGRGYHRKPDLTAERFLPDPFG
                     SQAGGRLYRSGDGASYLDDGLISFLGRIDNQIKISGYRIELSEIETALTEHPSIANAI
                     VLARQVADGHKRLVAYFVSNGGPTASSEELKRYLQDRLPHFMVPSVWIRLDQIPLTPN
                     GKVDRRALPDPDYARPDSASGFDAPRTQTEEILAGIWKRVLGVEGIGRNDNFFALGGY
                     SLLATRIISRIRESFQVELPVRYLFEWPALADLAERIEETMRSGDTLTLPPLKPFTGT
                     GPLPLSYAQQRLWFLDRLTPHNNAYNIPVGFRVRGPLNLIGLEQSFDETIQRHESLRT
                     NFVEVDGQPVQVIAPRRKHSLILIDLSALAEAEQESLLQRLGAEEAQRPFDLAADPLV
                     RTTVFRLGEQEHVLSVVTHHIVSDGWSLDVLTRDVPRTYQAFAQGVPSDLPELPIQYA
                     DYAYWQREWLQGEILERELSYWRNQLDGSLPELNLPTDRPRPSALSLKGNAVAFELSE
                     TLTRQLKDLSQAEGSTLFITLLAAFQILLARYSGQDDIAVGAPVAGRRWVETEDLIGF
                     FVNTLVLRTRFTGDPTVRDVLHRVREVTIEAQTHQDVPFEKLVEELQPQRTLSHGPLF
                     QTMFVYLNEGERLEALDGLSFSSLELNHGTEKNDLTLRIVEEGAKLTGSLSYSTDLFD
                     ESTIRRMTAHWQRLLEAIVTDPEQLLRDVDLLSAAERRQMLEEWIATEREFPEGVTLQ
                     DLFAEQVARTPDAVAVTSVDQRLSYAELDQRSNQLAHYLRKAGVGPESPVALFLERSA
                     DVIVALLGVLKAGGAYLPLETTHPKGRVQYALDDARAGVILAQKRTAEMLPEHRAQVI
                     CLDSDWPSIAAESIEAPAVNITPENLAYVIYTSGSTGGARGVMVQHRSVVNLAAALRE
                     KVYPADAGPLRVSVNAPLMFDSSVKQLVQLLQGHELCVIPEEVRIDGDELAGYIRLQG
                     IDVLDCTPSQ"
BASE COUNT          698 a          980 c          943 g          673 t
ORIGIN      
        1 ctgcgaaggt gtgcaatcga gcacatcgat tccctgaagt ctgatgtaac cggccagctc
       61 gtcaccatcg attcgcactt cttcgggaat gacgcacagt tcgtgtccct gaaggagctg
      121 caccaactgt ttgacggacg agtcgaacat caacggcgcg ttgacgctga cgcgaagcgg
      181 acctgcatcc gccggataga ctttttcgcg cagtgcagcg gccaggttta cgacggagcg
      241 gtgctggacc atgacgccgc gagcgccacc cgtcgacccg gacgtgtaaa tcacgtaagc
      301 caggttctca ggcgttatgt ttaccgctgg cgcctcaatc gattccgcgg cgatgctggg
      361 ccagtcggaa tccaaacaga tcacttgcgc acgatgctcc ggcaacattt cggccgtccg
      421 cttttgtgcg aggatcacgc ctgctcgcgc atcgtccaac gcatactgca cacgtccttt
      481 cggatgtgtt gtttccagcg gcaggtacgc gccacctgct ttcagcacac ccaacaaggc
      541 aacgatcacg tcggccgaac gctcgaggaa aagcgcaacc ggtgattctg gaccaacccc
      601 tgccttgcgc aggtagtggg ccaactgatt cgaccgctgg tccagctctg cgtaggacaa
      661 ccgttgatcg acggaagtta cggccacggc atctggcgtt cgtgcaacct gctcggcaaa
      721 gagatcctga agagtgacac cttcgggaaa ctcacgctcc gtggcgatcc actcctcgag
      781 catctgacgc cgttcggcgg cgctcagcag atcgacgtca cgcagcaact gctccggatc
      841 ggtcacgatt gcttccagca gccgctgcca gtgggccgtc atgcgccgga tcgtgctttc
      901 atcgaaaagg tcagtgctgt aactgagcga gccggtgagt ttggctcctt cttccacgat
      961 ccgcagcgtc agatcgttct tctcagttcc gtgattgagc tccagactcg aaaagctcag
     1021 gccatcgaga gcttccagtc tttcaccctc gttcaggtac acaaacatgg tctggaacag
     1081 cgggccgtga ctgagcgtgc gttgcggctg tagttcttcc acgagctttt caaacggcac
     1141 gtcctgatgt gtttgtgctt cgatcgtcac ttcacgcacg cgatgcagca cgtcgcgaac
     1201 cgttggatcg cctgtgaatc tcgtgcgcag cacgagtgtg ttgacgaaga atccgatcaa
     1261 atcctcggtc tcgacccaac gacggccggc cactggcgcg ccaaccgcga tgtcatcctg
     1321 gccgctgtag cgcgcgagca ggatctgaaa cgcagcgagc agcgtgatga agagagtgct
     1381 gccctccgcc tggctcaaat ctttgagttg tcgagttaac gtttcagaca gttcgaacgc
     1441 aaccgcgttt cctttcagcg acaatgctga cggacgcgga cgatcggtgg gcaggttcaa
     1501 ttccggcagg ctgccgtcca actgattgcg ccaatacgag agttcccgtt cgagtatttc
     1561 accctgcaac cactctcgct gccaatacgc gtaatcagcg tactggatcg gcagctccgg
     1621 caggtctgaa ggcacaccct gagcaaacgc ctgatacgtt cgcggcacgt cgcgcgtcag
     1681 aacgtcgagg gaccaaccgt cagaaacgat gtgatgagtg actaccgaca acacatgctc
     1741 ctgctcgccg aggcgaaaca cagttgtgcg caccaacgga tccgcggcaa ggtcaaacgg
     1801 gcgttgagct tcttcggcgc ccaatcgctg aagcaacgat tcctgctcag cttccgcaag
     1861 agctgaaagg tcgatcagga tgagagaatg tttgcgccgc ggcgcaatca cttgcaccgg
     1921 ttgtccatcg acctcgacga aattggtgcg caacgattcg tgacgttgaa tggtttcgtc
     1981 aaagctctgc tcgagaccga tcaagttcaa tggaccacga acacggaagc caaccggaat
     2041 gttgtaggca ttgttatgtg gcgttaaccg gtccaggaac cagagacgct gttgtgcgta
     2101 agacagaggt aacggtccgg ttccggtgaa tggcttcagt ggcggcagcg tcagcgtgtc
     2161 gcctgaacgc attgtctctt cgatgcgttc ggccaggtct gccagcgccg gccactcgaa
     2221 caggtaacga accggcaact ccacctggaa gctctcgcga atacgcgaga tgattctggt
     2281 cgccaacagc gagtaaccgc cgagcgcgaa gaagttgtcg tttctgccaa ttccctccac
     2341 gccgagcacg cgcttccaaa tccccgcgag gatctcttcg gtttgtgtcc gtggcgcgtc
     2401 gaagccggac gccgagtccg gccgcgcgta atcgggatcc ggcagcgcac gccgatccac
     2461 cttgccgttg ggcgttaacg gtatctggtc cagacgaatc cagacgctcg gcaccatgaa
     2521 gtgcggcaag cggtcctgga gataccgctt caactcttca ctgctcgcag ttgggccgcc
     2581 attgctcacg aagtaagcca ccaaacgctt gtggccgtcg gctacttgtc ttgcgagcac
     2641 gatcgcgttc gcgatcgacg ggtgttcagt gagcgcggtt tcgatctcgg aaagttcaat
     2701 ccggtaaccg ctgatcttga tctggttatc gatgcggcca agaaaactga tgagcccgtc
     2761 gtccaaatag cttgcgccat caccgctgcg gtacaagcgg ccgccggctt gtgaaccaaa
     2821 aggatcgggc aggaagcgtt ctgccgtcag atcgggtttg cggtgatagc cgcgtccgac
     2881 cccgatgccc ccgatgaata attctccccg ttcaccaact ccggcaagtt gcagattatt
     2941 cagcacgtaa ttagtggtgt tggaaatcgg ccggccaata ggcactgaag gaccgggaaa
     3001 gtcgggaact atgtcgtaag cggaggcaaa cgtcgtggcc tcggttgggc catagccgtt
     3061 gatcagccgg cagttgtccc attgctcgag ggcctttttg acatggacgg gcgacagcgc
     3121 atcaccaccg gcgagcaatt gcctgagtgc cggcatcggt ccgacctcgg cgtcgaccaa
     3181 ctgatgaaac aacccgctgg tcaaccacat cgttgtgatc tgcgttcggt ttataaactg
     3241 ggccaactca gccaaagaag gcaggtgagg tgaaaaaaca accgcgcgcg cgcc
//
LOCUS       DASWTX010000546         1792 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_291368, whole genome shotgun sequence.
ACCESSION   DASWTX010000546 DASWTX010000000
VERSION     DASWTX010000546.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1792
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291368"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(336..>1792)
                     /locus_tag="VGD38_08335"
     CDS             complement(336..>1792)
                     /locus_tag="VGD38_08335"
                     /inference="COORDINATES: protein motif:HMM:NF013491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PEP/pyruvate-binding domain-containing protein"
                     /protein_id="HEY0728059.1"
                     /translation="TFFTPVAFKPNSLRQDEATKSLAGMQRILQSDIAKEQEYQALNI
                     AKGLGRIHIIEKLDDHFEIGSNEILVLDEVPVQLPPVAGIITSQPSTPLSHINLLAKG
                     WGIPNAYIKNAKELFKQYDGWWVSFETLREKYTIKRADMNQLREYQRRQAQRLDVMKP
                     RFNLDETRLLDLVQQRSRASLAFGGKSANLGEVLNARLPSIVVPPGFTIPFHYYDEFI
                     KRNGLDDTIFGLLNDQKFVHDPAYRRAQLVSLRQKIESAEFDPELRQKVLQKVAREYA
                     GKGLFVRSSSNSEDLPNFSGAGLYTTVPNVRGDQELIDAIRKVWASLWNFEAYEARER
                     ASVDHSKIFMAVLLQEGINSESSGVMITTDPFDRENSGAIYISAKRGLGIKVVEGQRI
                     AEQIIFRPRTNAIQVLTRSAEDSLLTFDEKGGVKEVPITGDRVVLTDEVIRRLVRAAG
                     SIKRIFGARDQDIEWAYMKGQIYIVQSRPFIPGS"
BASE COUNT          331 a          532 c          509 g          420 t
ORIGIN      
        1 ccatcggctc gcacctttgc tccacgcttc cttcagaccc cgcctcacga cgacgccctt
       61 gcgcttcgct aactcttcac ctccatcagg ttgagtagga gactttcact ccctagctgt
      121 caaacatgct cggcacacaa caaaaacccg ctgccgggtt ggtttcggca gcgggttttg
      181 gaatcgtctt gcgcttctta attttcgtca gcgcttgcaa cacgatcgca gcccgccacc
      241 ctcgtggtgg tgatgccaat acgcatgatg gccgcgatcg atattaaaca ttgcccgggc
      301 cttatacccg agccgccccg tggttgtcaa atttctcaac tacccggaat gaacgggcgc
      361 gactggacga tgtagatttg gcctttcatg taggcccact cgatgtcctg gtcgcgggcg
      421 ccgaagatgc gcttgatgga gcccgccgcg cgcacgaggc ggcgaatcac ttcgtccgtc
      481 agaacaaccc ggtcgcccgt gatcggcact tctttcacgc cgcctttttc gtcaaacgtg
      541 agcaggctgt cttcagccga gcgggtcagg acctggatcg cgttggtgcg cgggcgaaag
      601 atgatctgct ccgcgatgcg ttggccttcg acgactttga ttcccaggcc gcgcttcgcg
      661 ctgatgtaaa tcgcgccgct gttttcgcgg tcgaacggat ccgtggtgat catcacgcct
      721 gagctttccg agttgatccc ttcctgcaac agcaccgcca tgaagatctt cgagtggtcc
      781 acactcgcac gctcgcgcgc ttcgtacgcc tcgaagttcc acaacgacgc ccacaccttc
      841 ctgatcgcgt cgatcaattc ctgatcgccg cgaacgttcg gcacagtcgt gtatagcccg
      901 gcgccgctga agttcggcaa gtcttccgag tttgaagagc tgcgcacaaa caaacccttg
      961 ccggcatact cccgcgcgac tttttgcaag accttctgcc gcaactccgg atcgaactcc
     1021 gcgctctcga tcttttggcg gagcgatacg agctgcgcgc gcctgtaagc ggggtcgtgt
     1081 acgaattttt gatcgttgag cagaccaaag atcgtgtcgt cgaggccgtt tcgtttgatg
     1141 aactcgtcgt agtagtgaaa cgggatcgtg aaaccgggcg gcacgacgat cgaaggcaaa
     1201 cgcgcgttca gcacttcgcc caagttcgcc gatttaccgc cgaaagcaag actcgcgcgc
     1261 gagcgttgtt ggaccaggtc gagcaggcgc gtttcgtcga gattgaaacg cggcttcatc
     1321 acgtcgaggc gttgcgcctg ccgccgctgg tactcgcgca gttggttcat gtcggcgcgt
     1381 ttgatcgtgt acttctcgcg cagcgtctca aacgaaaccc accagccgtc gtactgcttg
     1441 aacagctctt tcgcgttttt gatgtacgcg ttgggaatgc cccagccttt cgcgagcagg
     1501 ttgatgtgcg agagcggcgt cgatggttgc gaggtgatga taccggcgac gggcggaagc
     1561 tgaaccggga cttcatccag gaccaaaatt tcgttagagc cgatctcgaa gtgatcgtcg
     1621 agcttctcga tgatgtggat gcggccgagg cccttcgcaa tatttagtgc ctggtactcc
     1681 tgttccttcg cgatgtcgct ttgcaggatg cgctgcatgc cggcgagaga ttttgtcgct
     1741 tcgtcctgtc gcagtgaatt tggtttgaag gcgacgggtg tgaagaaggt tt
//
LOCUS       DASWTX010000547         2672 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_266830, whole genome shotgun sequence.
ACCESSION   DASWTX010000547 DASWTX010000000
VERSION     DASWTX010000547.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2672
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266830"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1205)
                     /locus_tag="VGD38_08340"
     CDS             complement(<1..1205)
                     /locus_tag="VGD38_08340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728060.1"
                     /translation="MADAKPPSTTDLLQLIAGLQLPKNPDRTADFGEDYYLNPPTTTD
                     ERTLRELQPNPFWLRDPKAAWDAVKFRDWLFATLLAGVADRKTEYKAISEPLLFSIDV
                     LSKEFKPGMAGLTNEIGELLKAKSGRERNLFFTLSVGISRHEIDSKEVFTFGLGMRRR
                     ATVWLNSEEALQASVEFFLPFYVLPSSSHPPEPKFANARSICAGIIVTNSKGAAIGRD
                     ENNKELAAMRFNFRIPFTTSWRSPSNTDPENYITSFGTPEIQIQKKVKDGATTGNWEK
                     FGGWKDFLGTYVERAEVKDLLNAPIGPLLAATVSNPAGVTDIILKQKKRDEIKTDLAN
                     VKQDLDDQLAILKNIWEWKPPKKDAVGPHSSQRKLGSLLESLGFISGKQGGGGEFDYS
                     FKMAQGVTV"
     gene            complement(1380..2525)
                     /locus_tag="VGD38_08345"
     CDS             complement(1380..2525)
                     /locus_tag="VGD38_08345"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY0728061.1"
                     /translation="MFTHEAVIVGAGPAGCATAIELANLDATLAGRLLLIDKAVFPRP
                     KLCAGGLSVDTDAELQALGVAIDVAATPIHNTQFLLPTGRLTFSLSNQFRIVRRTDFD
                     HALLKAAQARGVVTHEGEPVEDVIVSEDGVLVRTPKAEYRAKLLIAADGANSKIRVAL
                     GLSRIGRLMVAMEVHSAYSDLARADIHENTAILDLRVLNHGVPGYCWIFPSVNERLRE
                     ISLGIMAAPFDSHQLSPVRAVFGNWLQRLGLDVDNFRIASHPALRYEAKAACSQQRVL
                     FVGDAAGVEPLFGEGIVSALAYGRIAARAAFDALRTGDFSFADYERRVRSSEIGSLMR
                     RRKIIARRLYEKPRLAHFLLKQGALIRGLGLLHVYKYGGKLTWEAGR"
BASE COUNT          577 a          715 c          768 g          612 t
ORIGIN      
        1 cacaccgtca ctccctgggc catcttgaac gagtaatcaa actcgccgcc gccgccttgc
       61 ttgccggaga taaaacccag cgactcgagc aagctgccga gtttgcgttg agatgagtgt
      121 ggaccgacgg cgtctttctt cggcggcttc cattcccaga tgttttttag gatggcgagc
      181 tgatcgtcga ggtcctgctt cacgttcgcg aggtcggtct tgatctcgtc gcgtttcttt
      241 tgtttgagaa tgatgtccgt gacgccggct ggattggata ctgttgcagc cagcagcggg
      301 ccgatcggtg cgttgagcag atctttgact tccgcgcgtt cgacgtaggt tccgaggaag
      361 tctttccagc cgccaaactt ctcccagtta cccgtcgtcg cgccgtcctt aaccttcttc
      421 tgaatctgaa tctcgggtgt tccgaagctg gtgatgtagt tttccgggtc ggtgtttgaa
      481 ggggatctcc agctagtcgt aaaggggatg cggaagttga aacgcatcgc ggcgagctct
      541 ttattgtttt cgtcgcggcc gatcgccgca cctttcgagt tggtgacgat gatgcccgcg
      601 cagatcgatc gcgcgtttgc gaatttcggc tccggcggat gactcgagct cggcagcacg
      661 taaaacggaa gaaaaaattc gacgctcgct tgcagtgctt cctctgagtt gagccacaca
      721 gttgcacggc gtcgcatgcc gaggccaaac gtgaacactt ccttgctatc gatttcatgt
      781 ctggagatgc cgactgagag ggtgaagaaa agattacgct cgcgtcctga cttggctttg
      841 agtagctcac cgatctcgtt ggtgagaccc gccatgccgg gcttgaactc tttcgacagc
      901 acatcgatcg agaagagcag cggttcggag atcgctttgt actccgtctt gcgatcggcg
      961 acgccggcga ggagtgttgc gaataaccag tcgcggaatt taacggcgtc ccacgccgct
     1021 ttcggatctc tcaaccaaaa cgggtttggc tgcagctcgc gcagcgtgcg ttcgtccgtc
     1081 gtagtgggcg ggtttagata atagtcttca ccaaaatcgg cggttcgatc cggatttttg
     1141 ggaagttgaa gaccggcgat gagctgtagc agatcggttg tagatggtgg cttggcgtcg
     1201 gccatcaata cacctcaaca atgaaacgga tacaggaata ggaccaacag cgagggagac
     1261 tgctcgtaat gcttagaaat gtaattggga aaacgcgacg ctggggcgtc aggcggtgga
     1321 gtatatgaag agatcgcaaa tcgggcaagc aaaagatttc ggagaggttt gggattgaat
     1381 tatcttccgg cctcccacgt cagttttccg ccgtacttgt agacgtgcaa caacccgagc
     1441 cctcgaatca acgcgccctg tttcagtaaa aaatgagcaa gcctgggttt ctcataaaga
     1501 cgccgagcga tgattttccg gcggcgcatg agcgaaccga tctcacttga gcgcacccgc
     1561 cgttcatagt ccgcgaaaga gaagtctccg gtccgaagtg catcgaacgc agccctggca
     1621 gcgattcgtc cataggccag ggcggaaacg atcccttcgc cgaagagtgg ctcgacgccg
     1681 gcggcgtcgc cgacgaacag aacacgctgc tgactacacg cggctttcgc ttcataacgt
     1741 aaggctggat gcgacgcgat tctgaagttg tcgacgtcga gtccgaggcg ttgcagccag
     1801 tttccgaaaa cagccctcac aggggaaagt tgatgagagt cgaacggcgc ggccatgata
     1861 ccgaggctga tctcccgaag tctttcgttt acgctcggga agatccaaca gtatcccgga
     1921 actccgtgat tcagaactcg gagatcgaga attgccgtgt tctcgtggat gtccgcgcgt
     1981 gcgaggtcgg aatacgcgga atggacctcc atggcaacca tcaaacggcc aattcggctc
     2041 agtcccaaag cgacccggat tttgctgttg gcgccgtccg ccgcaatcag aagttttgct
     2101 ctgtattcag ctttgggtgt tcgtactaga actccatcct cgctcacgat gacgtcttca
     2161 accggctctc cttcgtgtgt aactactccg cgcgcttgag ctgctttcaa aagagcgtga
     2221 tcgaaatcag tcctgcgcac gatacgaaac tggtttgaga ggctgaaggt caagcgaccg
     2281 gtcggaagca ggaattgtgt attgtgaatc ggcgtcgcgg ccacgtcgat cgcaacaccc
     2341 agggcctgta actcagcatc agtgtcaacg ctcagaccgc ccgcgcaaag ctttggccgt
     2401 ggaaatacag ctttgtcgat gagcaataga cgtccggcga gagttgcgtc gaggtttgcc
     2461 agttcgatcg ctgtggcaca acccgccggc ccggctccca cgattactgc ttcatgagta
     2521 aacatgtgaa gaaccctggc ctaccgtggg accgactgac ttgcagaatt gatcgaaggc
     2581 gacgcgaaac cagtaggtat aactctccgg atgtttttcc aggtcgattc tcagagtttc
     2641 gagatcggtc cagcgccatt ccgaaacctc ag
//
LOCUS       DASWTX010000548         2641 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_94007, whole genome shotgun sequence.
ACCESSION   DASWTX010000548 DASWTX010000000
VERSION     DASWTX010000548.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2641
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94007"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1717)
                     /locus_tag="VGD38_08350"
     CDS             complement(<1..1717)
                     /locus_tag="VGD38_08350"
                     /inference="COORDINATES: protein motif:HMM:NF014850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY0728062.1"
                     /translation="MNLKRNVISALCLLFLAASVCVANSRPGRTFSFNENWRFHLGDA
                     PNARNAAFDDSRWRQLHLPHDWSIEGKFSEKAPAGTGGGALPGGVGWYRKTFSMDAAL
                     KGKLVFIRFDGVYRNSEVWINGHYLGKRPYGYSTFEYELTPHLVYGAKPNVIAVKVDN
                     SQQPNSRWYSGSGIYRNVWLTTLDPVHIAHWGTYVTTPEVSEQSATVAVKTRVNNRSN
                     SSAPVDLTTIIQNAAGREVARLTQKGATGEVSQSLKVASPMLWSDERPYLYKVVSELR
                     HGGRVVDRYETPLGIRTFRFDVEKGFFLNGKPLKIRGVCNHHDLGSLGAAVNTRAIER
                     QLEILKAMGVNGLRTSHNPPAPELLELTDKLGFIVMDEAFDVWKIQKTKYDYHLDFDE
                     WHQRDLEDMVLRDRNHPSIFIWSTGNEVMEQWNKNPEGGNISRKLAAIVRNLDRTRPI
                     TAACNGVTTDNKVLTEGDLDLVGTNYHHADFFEFPKRFPGRVIIGAETNSSVHMRGSY
                     TMPSDEIRRWPRKNEDILKLGPTYECSAYDNSTAPWGAGHEEMWTLVKKHDWFSGMYI
                     WTGWDY"
     gene            complement(1743..>2641)
                     /locus_tag="VGD38_08355"
     CDS             complement(1743..>2641)
                     /locus_tag="VGD38_08355"
                     /inference="COORDINATES: protein motif:HMM:NF013239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 31 protein"
                     /protein_id="HEY0728063.1"
                     /translation="RYNDVVWNLTKEITGDGIIWGRSAWAGSQRYPLHWGGDAENTDS
                     AMAAELRGGLSFGLSGFTYWSHDVGGFVQRAPRDLYRRWLAWGILSSHTRAHGAPPRE
                     PWEYDAALTEDFRRALSLRYALMPYIYAQAKDSSARGFPMARPLFFEFPNDPGAWSID
                     DEYMFGSDLLVAPMFSNAEHRKVYLPPGSWIDYQSGRVYEGAKWHEIAPGVIPVVLLV
                     KNHSVLPHITVAQSTKDMDWNNVELRVFSTDAAPVTGLFTRPDSELQTLSLAPRGRDF
                     VLRQDPQAGRVKWTIKVQPLTR"
BASE COUNT          539 a          774 c          753 g          575 t
ORIGIN      
        1 gatagtccca gccggtccag atgtacatcc ccgagaacca gtcgtgtttc ttcacgagcg
       61 tccacatctc ttcgtggcct gcgccccacg gcgcggtcga gttgtcgtac gcagaacact
      121 cgtaggttgg tccaagtttc agaatgtctt cgttcttcct gggccaacgc cggatctcgt
      181 cggaaggcat cgtgtagctt ccgcgcatgt gcacggaaga gttggtttcg gcgccgatga
      241 tcacacgtcc cggaaaccgc tttggaaact cgaaaaaatc agcgtggtgg tagtttgtgc
      301 cgactagatc gagatcgcct tccgtcagca ctttgttgtc cgtagtcacg ccgttgcacg
      361 cggctgtgat cgggcgggtg cggtcgagat tgcgaacgat ggcggccagc ttgcggctga
      421 tgttgccgcc ttcagggttc ttgttccact gctccatgac ctcgttgccg gtgctccaga
      481 tgaagatgct cggatgattg cggtcgcgaa gcaccatgtc ttcgaggtct cgctggtgcc
      541 actcgtcgaa gtcgaggtgg tagtcgtatt ttgttttctg gatcttccag acgtcgaagg
      601 cttcgtccat gacgatgaag cccagcttgt cggtgagctc gagcagttcg ggagcgggtg
      661 ggttgtgtga agtgcgcagg ccgttcacgc ccatggcttt caagatttcg agttgccgct
      721 cgatggcgcg cgtgttgact gcggcgccga gcgaaccgag atcgtgatga ttgcatacgc
      781 cgcggatctt gagcggcttg ccgttcagga agaaaccttt ttcgacgtcg aagcgaaacg
      841 tgcgaatgcc gagaggagtc tcgtaacgat cgacaaccct gccgccgtgg cgtaattcgg
      901 agacgacttt ataaaggtac ggacgttcgt cggaccagag catcggcgac gcgactttca
      961 agctctgact tacttcaccg gtcgctccct tctgcgtgag tcttgcgact tctcgtccgg
     1021 cagcgttctg aatgatcgtc gtcaagtcga caggcgcgga actattcgac ctgttattca
     1081 ctctcgtctt gaccgcgacg gtcgcagact gttcgctgac ttctggcgtc gtcacgtaag
     1141 tgccccagtg cgcgatgtga accggatcga gtgtcgttaa ccaaacgttg cgataaatgc
     1201 ccgagcctga ataccaacgc gaattgggtt gctgtgagtt gtcgaccttg accgcgatca
     1261 cgttcggctt cgcgccgtac acgagatgtg gcgtgagttc gtattcgaag gtgctgtagc
     1321 cgtaaggacg tttgccgaga tagtgaccgt tgatccaaac ctcactgttg cgatacacgc
     1381 cgtcaaaccg gatgaagacc agttttcctt ttaacgcagc atccatcgaa aacgtcttgc
     1441 gataccagcc gacgccgccg ggcaaagcgc cgccaccggt cccagcggga gctttctcac
     1501 tgaatttacc ttcgatactc cagtcgtgag gtaagtggag ttgtcgccac ctcgaatcgt
     1561 caaacgcggc gttcctcgcg ttgggcgcgt cgccgagatg aaaacgccag ttctcgttga
     1621 atgagaaagt tcttcccggc cgggaattgg cgacgcaaac tgatgccgcc aaaaacagca
     1681 aacaaagcgc gctgataaca tttcgcttca ggttcatagt tttgcggtag aactcaaaac
     1741 gactatcgcg taaggggctg gaccttgatg gtccacttca ctcttccggc ctgcggatcc
     1801 tggcgtagaa caaaatcgcg gccgcgcggc gccagtgaaa gagtttgcag ctcgctgtcg
     1861 ggtcgcgtga agagtccggt aacgggtgcg gcgtccgtgc tgaaaacacg caactccacg
     1921 ttgttccaat ccatgtcctt cgtgctctgc gccactgtga tatgcggcag caccgagtgg
     1981 ttcttaacca gcagcacaac cggaatcaca cccggcgcaa tctcgtgcca cttcgcgcct
     2041 tcgtaaacac gcccgctctg gtaatcaatc cagctacccg gcggcagata aaccttgcgg
     2101 tgctcggcgt tgctgaacat cggcgccacc agcaagtccg acccgaacat gtactcgtcg
     2161 tcgatggacc acgcgcccgg atcgttcgga aactcaaaga acagtggacg cgccatcgga
     2221 aaaccacgcg cggacgagtc ttttgcctgc gcgtagatgt aaggcatcaa cgcataacgc
     2281 aaactcaaag cacggcggaa atcttcggtc agcgccgcat cgtattccca tggttctcgc
     2341 ggcggcgcgc catgcgcacg cgtgtgagaa ctcagaatgc cccacgccag ccaacgccgg
     2401 taaagatcgc gcggcgcgcg ttgcacaaaa ccgccaacgt catgactcca gtaagtgaaa
     2461 cccgagagtc caaacgaaag cccgccgcgc aactccgccg ccatcgccga atcagtattc
     2521 tcggcgtcgc cgccccagtg cagcggatag cgctggctgc cggcccacgc gctgcgtccc
     2581 cagatgatgc cgtcgcccgt gatctccttc gtgagattcc agacgacgtc gttgtatcgc
     2641 a
//
LOCUS       DASWTX010000549         2087 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_312957, whole genome shotgun sequence.
ACCESSION   DASWTX010000549 DASWTX010000000
VERSION     DASWTX010000549.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_312957"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            516..1658
                     /locus_tag="VGD38_08360"
     CDS             516..1658
                     /locus_tag="VGD38_08360"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0728064.1"
                     /translation="MLAGRKLLLADDSATIQKVIDLTFADEGVQVVSVSNGQEAIDRL
                     LELKPDVVLVDVFMPSPNGYEVCEYVKTNEQLKHIPVMLLVGSFEPFDEAEARRVGAD
                     DILTKPFQSIRRLIDRVGALVSSPPPAEKESPTLELPHTEPPVAEEVRLDTHELEVTT
                     ADTLRLDEEQLTELQAHVEQPGEEIMETGRMEVAEPRQESHVDSSDVLLDLGEIEAVG
                     EADDDFVLELDDDVSEPQVAAAAYSGAPAYEPARSYESAPAYEATTPAYEPAPAYEPA
                     RAFVEPQVTEAPQPYQSEIHDSFADTQEVAYAVIEPELATESVSSAVKSASASMAVGE
                     LSPEMIDAIARRAVELMSDKVIREIAWEVVPDLAELLIKKQLEETK"
     gene            complement(1751..>2087)
                     /locus_tag="VGD38_08365"
     CDS             complement(1751..>2087)
                     /locus_tag="VGD38_08365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728065.1"
                     /translation="KSGVQTRLVMVNAASDNEAILNDKEMVMDLLRRLPDDVTLYQIA
                     QKLEFIAAVRQGLAEFDENKDSISIEQVERELTSWSVTVGRKRRGRRKAQRAAKTGEI
                     AKNEKQVTR"
BASE COUNT          479 a          580 c          570 g          458 t
ORIGIN      
        1 tcatcaccct tgaaccagcc gctacacaca cggtgcttat ccagctaaac attcctttca
       61 ttgaagaatc taaacagcgc tctcaggatt cattggcacc aggcgactac ctcttgcagg
      121 tccttgtgtg gacatggcta gactcgcaat cgtttgctac gcaatcacgt gaaaagtgga
      181 aggatcaagg atacctatgg actaagagca taacctccga gccaattcct ttcaccgtgt
      241 cgaaggagag aacgatttcg gcgtgttcat gaattgagtg gcacgcgagg ccttggcgga
      301 gctggaccca tgggtacctg agagccttcg agaccttgct ccggtctaac ccccaaaacc
      361 cgcgccaaac taaactcttg actgccactt accccgggtg ttaggtttca taccgggcct
      421 cgtccaaaag gcccacttcg aacgaacatg cccgcgccat ccgtgcacat gcacaaggcc
      481 ccgccgatgg tgcaattcag ctaaaggatt aggctttgct agctggtcgc aaactcctac
      541 ttgccgacga ttcggccacc attcagaaag tcatcgacct tacgttcgcc gatgaaggtg
      601 tgcaagtcgt gagtgtcagc aacggccagg aagctatcga tcgcctgctg gaattaaagc
      661 ccgacgtggt gctggtagac gttttcatgc cctcacctaa cggttacgag gtttgcgaat
      721 acgtcaaaac aaatgagcag ctcaaacaca ttcccgtcat gctgctcgtt ggctctttcg
      781 agccgttcga cgaagcggag gcgcgcagag ttggcgcgga cgacatcttg accaaaccat
      841 ttcaatccat tcgacgactg atcgaccggg tgggcgcgct tgtgagcagt ccgccgccgg
      901 ctgagaaaga gagtcctacg ttggaacttc cgcacaccga accaccggtg gcggaagaag
      961 tacgcctgga cactcatgaa ctggaagtca cgaccgcaga cacgctgcgt ctcgacgaag
     1021 agcaattaac ggaattgcaa gcgcacgtag aacagccggg cgaggagatc atggaaactg
     1081 gcaggatgga agtcgcggaa ccaagacagg aatctcacgt cgattcatca gacgtgttgt
     1141 tggaccttgg cgagattgaa gccgttggcg aggcggatga tgattttgta ctcgagttgg
     1201 atgacgacgt cagtgaaccg caagtagcag ccgcggctta ctcaggagca ccggcttacg
     1261 aaccggcgcg ttcatacgaa agcgctccag cttacgaagc aacaacgccg gcctatgaac
     1321 ctgcacctgc ttacgagccc gcgcgtgctt ttgttgaacc gcaggtgacg gaagcgccgc
     1381 agccgtatca atctgagatt cacgattcat ttgccgacac gcaagaagtc gcgtatgcgg
     1441 tcatcgaacc cgaactggca acggaatccg tttcgtcagc tgttaagtcg gcgtcggcgt
     1501 cgatggcagt tggcgaactc tcgccggaga tgatcgacgc gattgcgcgt cgcgcggttg
     1561 agttgatgtc tgacaaagtg atccgcgaga ttgcgtggga agtcgtgccg gatctggcgg
     1621 agttgctgat caagaagcag ttggaagaaa cgaagtaaag attttgtttg gaagtgggtg
     1681 gcccaaggtt gggttcggcc gcgggttagg ttcgaagtta gttaggcgtt aggagacgga
     1741 gcaggtggct ttaacgagtc acctgctttt cgtttttcgc aatctctccc gttttcgcgg
     1801 ccctctgcgc ctttcgccgt cctcgccgct tcctgccgac ggtcacactc cacgacgtga
     1861 gttcacgttc cacctgctcg atcgaaatgc tgtccttatt ctcatcaaac tccgccagcc
     1921 cctgccgcac cgccgcgatg aactcaagct tctgcgcaat ctgatacagc gtcacgtcat
     1981 ccggcaaacg ccgcagcagg tccatgacca tctctttgtc gttcagaatt gcttcgttgt
     2041 cgctggctgc attgaccatc acaagtcgag tctgtacgcc agatttt
//
LOCUS       DASWTX010000550         3478 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_244883, whole genome shotgun sequence.
ACCESSION   DASWTX010000550 DASWTX010000000
VERSION     DASWTX010000550.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3478
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244883"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..556
                     /locus_tag="VGD38_08370"
     CDS             <1..556
                     /locus_tag="VGD38_08370"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0728066.1"
                     /translation="QIKTNGDPPSKQTAALRGEIESISQEVRRICEDLSPSVLQNVGF
                     AAALEFALSHAVQDAPAEKRFEYEFHCDEAIEERSELPPSVQMQIYRIVQEAVNNIWR
                     HAGATEVKMFVNSGPEGDFSLRIEDNGCSFESQPTNSEGRGLANMRARAGLIDAHIAW
                     QQREGGGTVFTLHRKAARAGAPSR"
     gene            565..1416
                     /locus_tag="VGD38_08375"
     CDS             565..1416
                     /locus_tag="VGD38_08375"
                     /inference="COORDINATES: protein motif:HMM:NF016142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine-5'-phosphate glycosidase"
                     /protein_id="HEY0728067.1"
                     /translation="MIDKPVVALESTVIAHGLPRPINLEAARILESIVRASGAQPATI
                     AIVNGELCVGATDEQIQSLANGSNVKKISKRDIPIAVARKWTGGTTVSATLWIAERAG
                     IKVFATGGIGGVHRGSLPDVSADLPELARTPMIVVCSGGKIVLDLPATREWLETYGVT
                     VVGFQTDEMPAFYSRTSGLPVDVRADSAHEVAEIFHAQQKLGISSALLVCVPVAKEFE
                     VPAEQLKTVLDDALAHAERNNIGGRELTPFLLSEMAQRSKGMTLRANIALLENNARVA
                     AEIAKAL"
     gene            1787..3055
                     /locus_tag="VGD38_08380"
     CDS             1787..3055
                     /locus_tag="VGD38_08380"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEY0728068.1"
                     /translation="MIGNDRVRFCEHCQLTVHNIEHASQKQIKRLVERSNGRLCVNYR
                     QPAPQKTPAPILYKIGRRTSVIAASAFSATLSITSAVGASANLKQTGLRSKTAFAASV
                     VNPVSTPGGDAKLFGFVYDPNGAVITGATVILTNSETGESFYSSTSGDGQYRIEGVTP
                     GTYRLTINAQGFGSSDVPNLVVRAGDNNRIDQSLSIAPVEAELTADGRKLVSFVAGGV
                     AVALPSDPLVKAAMEDDLEAVQTILLSRSDVNKRDPTTSYSALERAVLNGNRDMVQVL
                     LWAKADVNARNGNGKTPLMMIGEDTDTEIVWDLINNGAKINLRDNDGDTALISAAQEN
                     NVEALKVLLDAGAKVNETNNDGESALIAAASAGYVHNVRVLILAGANVNARDKEGKSA
                     LMHAIEDDNKTVVRLLKAHGAIEFEAPEKQ"
     gene            complement(3257..>3478)
                     /locus_tag="VGD38_08385"
     CDS             complement(3257..>3478)
                     /locus_tag="VGD38_08385"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HEY0728069.1"
                     /translation="DTDENPVNQIDKTADWGYVRLRRVRYSKAELTAWSKRIEAQNWN
                     KTFVFFKHEDEGTGPKLAAQFIKLNNKPR"
BASE COUNT          830 a          971 c          987 g          690 t
ORIGIN      
        1 tcagatcaaa accaacggcg atccgcccag caaacagacc gctgctctac gtggcgagat
       61 tgaatcgatc tcgcaggaag tgcgtcgcat ttgcgaagac ttgagcccgt ctgtgctgca
      121 aaacgtaggc ttcgcggcag cattggagtt tgcgttgtcc catgccgtgc aggacgcgcc
      181 cgcagaaaag cgattcgagt acgagtttca ctgcgacgaa gcgatcgaag aacgaagcga
      241 gttgccgccg agcgtgcaga tgcagatcta tcgcatcgtg caggaagcgg tgaacaacat
      301 ctggcgccac gccggcgcga ccgaagtaaa gatgttcgtc aacagcggac ccgaaggtga
      361 tttctcactg cgaatcgaag acaatggctg ctcttttgaa tcacagccga caaattcgga
      421 aggacgcgga ctcgcaaaca tgcgcgcgcg cgcaggactg atcgacgcac acatcgcgtg
      481 gcaacagcgc gagggcggcg gcaccgtgtt cacgcttcac aggaaagccg cgcgtgcagg
      541 cgcgccgtca cgttgatgtc acacatgatc gataaaccag tggtcgcgct cgaatcgacc
      601 gtgatcgcgc acggcttgcc acgaccgata aacctcgagg ccgcgcggat tttggaaagt
      661 attgttcgcg ccagcggcgc acagccggca acgatcgcga tcgtcaacgg cgagctgtgt
      721 gttggcgcaa cggacgaaca aattcaatcg ctggcaaacg gcagcaacgt caagaaaatc
      781 agcaaacgcg atattccgat cgccgtcgcg cgaaaatgga ccggcggcac aaccgtctcg
      841 gccacgctct ggatcgccga acgcgcggga atcaaagtgt ttgcgaccgg tggcatcggc
      901 ggcgttcatc gcggctcgtt gccggacgtt tctgccgatc tgccggagct ggcgcgcacg
      961 ccgatgatcg tcgtgtgttc gggcggaaag atcgttctcg acttaccggc tactcgcgaa
     1021 tggctcgaaa cgtacggcgt gacggtcgtt ggttttcaaa ccgacgagat gcccgcgttc
     1081 tattcacgca ccagcggttt gccggttgac gtgcgtgcag attcggctca cgaagtagca
     1141 gaaatctttc atgcacagca aaagctcggg atctcatcgg cgttgctggt gtgcgttccg
     1201 gtcgcgaaag aatttgaagt tcctgcggag caattgaaaa ctgttcttga cgatgctttg
     1261 gcccacgccg aacgcaacaa catcggcggc cgagagctga cgccattctt gttgagtgaa
     1321 atggcccagc gcagcaaagg catgacactg cgcgcaaata tcgcactact cgaaaacaac
     1381 gcgcgcgtcg ctgccgagat cgcaaaggca ctataggtcc gataactcct ataagactta
     1441 ttcaaggctc tacatttttt tgcagccctt caacaaccct tcacactaac caccgcatct
     1501 cacggccgat catgtgagca cctccctggg ctcacgagca aaaagaaaat ttggcgtagc
     1561 acgaggtgag aaccgcaagt tcttgccgcc ctctcagtct gtaatttttg cggaaccaac
     1621 tcggataaag agcgtcaaaa ctgaagtgtt ttagagcgcc tctccccagg gctctccaat
     1681 catcgaacct gaaaggagtc agcctatgtc tgctaaggat tcgtctgcca gggatgctgc
     1741 cccgcagctt catattgttt cgccgtgtag tgtggattgg gactcaatga tcggaaacga
     1801 tcgcgtgcgt ttctgcgagc attgccagct aacggtccat aacatcgagc acgccagtca
     1861 gaaacagatc aaacggctcg tcgagcgatc caacggccgc ctttgcgtta attaccggca
     1921 accagctccg caaaaaactc ccgcgcccat cctctacaaa atcggccgcc gcacgtcagt
     1981 catcgcagcg agcgcgttct cggcaactct cagcatcacc agcgcagtcg gcgcgagtgc
     2041 gaacctgaaa cagaccgggc ttcgtagtaa aacagctttc gcggcaagcg tagttaatcc
     2101 cgtttccacg cccggcggcg acgcgaaact gttcggcttt gtttacgatc cgaatggcgc
     2161 cgtaatcact ggcgccacag tgatactgac aaattctgag accggcgagt cgttctattc
     2221 ttcgaccagc ggcgacggcc agtatcgaat cgaaggagtc acgccaggca cctaccggct
     2281 cacgattaat gctcaaggtt ttggttccag cgacgttccg aatctcgtgg ttcgcgcagg
     2341 cgacaacaat cgcatcgatc aaagcctgag cattgcgccc gtcgaggcgg aacttacggc
     2401 tgacggaagg aagttagtgt cattcgtggc tggcggggta gccgtcgcac ttcccagcga
     2461 tccgctcgtg aaagcggcga tggaagacga tctggaagcg gtgcagacga tcctgttaag
     2521 ccgatccgac gtaaacaaac gcgacccgac aactagctac tcggcgctcg aacgtgccgt
     2581 tttgaacggt aatcgcgaca tggtgcaagt gctcctgtgg gccaaggctg atgtgaacgc
     2641 gagaaacggc aacgggaaaa caccactgat gatgatcggc gaagacaccg ataccgagat
     2701 cgtctgggac ctaatcaata acggcgcgaa gatcaatctc cgcgacaacg acggcgacac
     2761 ggcactgatc agtgccgcgc aggaaaacaa cgtcgaggcg ctgaaggtcc tgctcgacgc
     2821 gggcgcgaaa gtgaacgaga ccaataacga cggcgagtct gccttgatcg ccgccgcgag
     2881 cgccggttac gtacacaacg tgcgcgtgtt gattctcgcg ggcgctaacg tcaatgcacg
     2941 cgacaaggaa ggtaagtcgg ctttgatgca cgcgatcgaa gacgacaata agactgtggt
     3001 gagattgctg aaggcgcacg gcgcgatcga atttgaagca ccggaaaaac agtagtaatc
     3061 taggtcctcc ttaaaaattc atctggagga ccatgatggc cgacgataac aacaagtgta
     3121 aaaaccctgc ctgcagttgc ccggcgcaac ccggaggcaa gtattgcagt gcatcctgtg
     3181 aaggctcggg gcagacgatc gagatcgatt gcgactgcgg tcacgagagt tgttcgggaa
     3241 acttctaagc agcgattcag cgcggcttgt tattcagttt gatgaactgc gcggccagtt
     3301 ttggtcctgt tccttcgtct tcgtgtttga aaaatacgaa agtcttgttc cagttttggg
     3361 cctcgatccg tttggaccac gcggtgagtt ccgcttttga gtaacgcacg cggcgcaagc
     3421 gcacgtaacc ccagtccgca gtcttgtcga tttggttaac ggggttttcg tcagtgtc
//
LOCUS       DASWTX010000551         1593 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_313010, whole genome shotgun sequence.
ACCESSION   DASWTX010000551 DASWTX010000000
VERSION     DASWTX010000551.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1593
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313010"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..674
                     /locus_tag="VGD38_08390"
     CDS             <1..674
                     /locus_tag="VGD38_08390"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY0728070.1"
                     /translation="NNPTGKVFTRDEMEFIASLCREFDALCFTDEIYEHILYPREGAD
                     IRHISMAHLDGMRDRTVVVNSMSKTYSVTGWRVGYCIAPPEITSAIRKVHDFLTVGAA
                     APLQAAGAYALSLPQEYYDRLQSEYRARRDLLLPVLEGAGFQTFVPDGAYYIMTGIDS
                     FGFSNDVEFTKHLIREVGVACVPGSSFYSVPERGQQQVRFCFCKKDETLHAAADRLSK
                     LKSRL"
     gene            747..1592
                     /locus_tag="VGD38_08395"
     CDS             747..1592
                     /locus_tag="VGD38_08395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728071.1"
                     /translation="MADDEFNTTVANPAYKQNGPRVMFDEAHHNFHTTDGRYKPFVDL
                     LSNDGYRIVRNRQPFTKTLLSSFKVLVIANALGAEEMDDTGAEASAFTEEEIVTVHDW
                     VKNGGALLLIADHAPFGGAAAALGQKFGIDMSKGFTYDPANSVENSPSVLIFSRENKL
                     LQSHPIVEGRDETERVNRVQSFTGQSLKGPDDSVALLKLADTAKDTPNRDADSSVSAA
                     GRAQAIALKFGKGRVVVQGEAAMLSAQVTGANKQKMGMNVPGTDNRQYALNLMHWLSG
                     LLKEK"
BASE COUNT          362 a          463 c          443 g          325 t
ORIGIN      
        1 caaacaatcc gaccggtaag gttttcacac gcgacgagat ggagttcatc gcgtcgttgt
       61 gccgcgagtt tgacgcgctg tgtttcaccg acgagatcta cgaacacatt ctctacccgc
      121 gcgaaggcgc cgacatccgg cacatctcga tggcccacct cgacggcatg cgcgatcgca
      181 cagtcgtggt caactcgatg tcgaaaactt attcagtgac gggttggcgt gtcggctact
      241 gcatcgcgcc gcctgagatc acgagcgcga tccggaaggt ccacgatttt ttgactgtgg
      301 gcgccgccgc gccgctgcag gctgccggcg cgtatgcgct gtcgttgccg caggagtact
      361 acgacaggtt gcaaagtgag tatcgagcgc gtcgcgatct gttgttgccg gtgcttgaag
      421 gcgccgggtt tcagacgttt gttccagacg gcgcttacta catcatgacc ggcatcgaca
      481 gcttcggctt ttccaatgac gtcgagttca caaagcatct gattcgtgaa gtcggcgtcg
      541 cctgcgttcc cggctcgagc ttctacagcg tccccgagcg cggccagcag caagtgcggt
      601 tctgtttctg taaaaaggac gaaactctgc acgccgccgc ggatcgctta tccaaactaa
      661 aatcccgtct ttagaattcg atgaaacacg ttgctataac ctgcgctctt ctcctcgtac
      721 tgtccgtttc tgctcagtct caacagatgg cggacgacga attcaacacg actgtcgcaa
      781 accccgctta caagcaaaac ggcccgcgcg tgatgttcga cgaagcgcat cacaactttc
      841 acacaacaga cgggcgttac aaaccattcg tcgatctcct gagtaacgac ggctatcgca
      901 ttgttcggaa tcgccagcca ttcactaaaa ccttgttgtc cagctttaag gtcctcgtga
      961 ttgccaacgc gctcggcgcg gaggaaatgg acgacaccgg cgcggaggct tcagcattca
     1021 ccgaagaaga aatagtgacc gtgcacgatt gggttaaaaa cggcggtgcg ctgctgctaa
     1081 ttgccgacca cgcaccgttc ggcggcgccg cggccgcgct cggacagaag ttcggcatcg
     1141 acatgagcaa gggcttcact tacgatcccg caaactcggt cgaaaacagc ccttcagtcc
     1201 tcatcttctc gcgtgaaaac aaactgctgc agtcacatcc gatcgtcgaa ggccgcgacg
     1261 aaacagagcg agtcaatcgc gtacagagtt tcaccggtca atcgttgaaa ggacctgacg
     1321 acagcgtcgc gcttctgaaa cttgcagaca cagccaaaga cacgccgaat cgcgacgccg
     1381 attcttcagt gtctgctgcc gggcgtgctc aggcaatcgc gctgaagttt ggcaaaggcc
     1441 gcgtggtggt ccagggcgag gcggcaatgc tctcggcaca ggttactggc gccaacaaac
     1501 agaagatggg aatgaacgtg ccgggcacgg acaacaggca atacgcgctg aacctgatgc
     1561 actggctgtc agggctgttg aaagagaagt aat
//
LOCUS       DASWTX010000552         2242 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_179839, whole genome shotgun sequence.
ACCESSION   DASWTX010000552 DASWTX010000000
VERSION     DASWTX010000552.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2242
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179839"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..200
                     /locus_tag="VGD38_08400"
     CDS             <1..200
                     /locus_tag="VGD38_08400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728072.1"
                     /translation="NKKTTPKILQIVFAICDPSYCQIVENRGAIEPAQVRLRIQNLRG
                     GSLVRRMYTRGRSIWQSFLQP"
     gene            248..1237
                     /locus_tag="VGD38_08405"
     CDS             248..1237
                     /locus_tag="VGD38_08405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728073.1"
                     /translation="MIRRSGKPAGRVLAVLLFLTCGVISANAYTLVMRDGRRVEIPDA
                     FTVTNTTLTYEVSSGIQVTVQLSTVNIPATERANGEAYGTFMSKSAPAPAPTTAPEPA
                     AASAQARPRQARQTANRSITNADLEEYRRTRVASERAYEKRRQQLGLPSREASQRELA
                     AVTQRTHEQLRNQRDQQQEGEAYWRGRASALRTEIATNDAQIAVVTQRLEELPVSYSL
                     GNYGNYDTGPFGNGNPTVINPYPNYPVLGNPFPFPNNNRRGNRRWNRRFPRFPQTNVV
                     IGPVDTYDYNEERLSLRTQLNELQMQRAALAVRWRELEEEARRAGAYPGWLRP"
     gene            1244..>2242
                     /gene="gatB"
                     /locus_tag="VGD38_08410"
     CDS             1244..>2242
                     /gene="gatB"
                     /locus_tag="VGD38_08410"
                     /inference="COORDINATES: protein motif:HMM:TIGR00133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEY0728074.1"
                     /translation="MSWETIIGLEIHAQLSTESKIFCGCATRFGDEPNSNTCPTCLGL
                     PGALPVLNRRAVELGARAALALGLRINHQSIFARKNYFYPDLPKGYQISQFDQPFSAD
                     GELEIMTAERDAAGHPLEWRPKKIRITRLHLEEDAGKNVHEGLPDVDRYSYIDLNRAG
                     VPLAEIVTEPDFRSSWEAYDYVNHVRRALQWVEASDADMEKGNLRCEANVSVRRVGEE
                     KFGTKVELKNLNSVRFMQRAIEFEVARHIKLLESGGRVSQETRLWDDRALETRVMRSK
                     EEAHDYRYFPEPDLPPLIVTQEFVDGVRGAMPELPEQRLKRCADEYGLSFADASQLV"
BASE COUNT          491 a          650 c          661 g          440 t
ORIGIN      
        1 ccaacaagaa aacgaccccc aaaatcttgc aaatcgtctt tgccatttgt gacccgtcct
       61 attgtcaaat agttgagaac cgaggggcta ttgagccggc tcaggtcagg ctccgcattc
      121 aaaacctgcg tggtggttcg cttgtgcgcc gcatgtatac cagagggcgg tccatttggc
      181 aaagtttttt gcagccgtaa gtgatatact gtcgccccaa aattgaatac tcaataagag
      241 gtgcaagatg attcgacgca gcggtaagcc ggcaggtcga gtcctggcgg tccttttgtt
      301 cttgacgtgc ggcgtcattt cagcaaacgc gtacacactc gtgatgcgcg acggtcggcg
      361 cgtcgagatt cccgatgcgt ttacggtcac aaacacgacc ctgacttacg aagtaagttc
      421 gggaatccag gtgacggtcc agttgagcac cgtcaacatc cccgcgactg aacgggccaa
      481 cggcgaagcc tacggaacgt tcatgtcgaa gtcggcgcct gcgcccgcgc ccacaaccgc
      541 gcctgagccg gccgccgcgt ccgctcaagc ccgtccgcgg caggcgcgtc aaacagcaaa
      601 tcgctcgatc accaacgccg atctcgaaga gtaccggcgt acgcgtgtcg caagcgaaag
      661 ggcgtacgag aagcgccggc aacagttggg actgccctcg cgagaagcga gccagcgcga
      721 gttggccgca gtcacacaac gcacgcacga gcagttgcgc aaccagcgcg atcagcaaca
      781 ggagggcgag gcttactggc gcggccgtgc cagcgcgctg cgcacagaga tcgccacaaa
      841 cgatgcgcag atcgccgtcg taactcagcg cctggaggag ttgccggtga gttactcgtt
      901 gggcaattac ggcaactacg acaccgggcc ctttggcaac ggtaatccga ctgtgatcaa
      961 tccgtacccg aattatccag tcttaggaaa tccgtttccg tttccgaaca acaaccgccg
     1021 gggcaatcgc cgctggaacc gccgcttccc gcgtttcccg caaacgaacg tggtcattgg
     1081 ccccgtcgat acttacgact acaatgagga acggttaagc ttaagaaccc aattgaacga
     1141 gcttcaaatg cagcgcgccg cattggcagt ccgttggcga gaactggaag aagaggcacg
     1201 ccgcgcgggc gcgtatcccg gctggcttcg tccgtaagta aagatgtcct gggaaacaat
     1261 tatcggtctt gagattcatg cccaactgag cactgaatcg aagatcttct gcggttgcgc
     1321 cacgcgtttt ggcgacgagc caaattcgaa tacttgtcca acctgcctgg gcctgcccgg
     1381 cgcgcttccg gtgctgaacc ggcgcgccgt cgagctcggc gctcgcgccg cactcgcact
     1441 cggcctgcgt atcaatcacc aatcgatctt cgcacgcaag aactacttct atcccgatct
     1501 cccgaagggc taccagatct cgcaattcga tcaacctttc tcggctgatg gggaactcga
     1561 gatcatgact gcggaacgcg acgccgcggg ccatccgctc gaatggcgtc cgaagaagat
     1621 ccggatcact cgtctgcatc tcgaagaaga cgcgggcaag aacgtgcacg aaggtttgcc
     1681 cgacgtcgat cgttactcct acatcgatct gaatcgcgcg ggtgtgccgc tggccgagat
     1741 cgtcaccgag cccgacttcc gttcgtcgtg ggaagcttac gactacgtca atcacgtccg
     1801 ccgcgcgttg cagtgggtgg aggcttctga cgccgacatg gagaagggaa atcttcgttg
     1861 tgaagcgaat gtttccgtgc ggcgtgtcgg tgaagagaag ttcgggacga aggttgaact
     1921 caaaaacctg aactcggtgc ggttcatgca acgcgcgatc gagtttgaag tcgcgcggca
     1981 tatcaagctg cttgaatcgg gcgggcgtgt ttcgcaggag acgcggttgt gggacgaccg
     2041 ggcgctggaa acgcgcgtga tgcgttcgaa agaagaagcg cacgactatc gctattttcc
     2101 cgaaccggat ctgccgccgt tgatcgtgac gcaggagttc gttgacggcg tgcgtggggc
     2161 aatgccggag ttgccggagc aacgtctcaa gcggtgtgct gacgaatacg gtttgagttt
     2221 cgctgatgct tcgcaactcg tt
//
LOCUS       DASWTX010000553         8265 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_6305, whole genome shotgun sequence.
ACCESSION   DASWTX010000553 DASWTX010000000
VERSION     DASWTX010000553.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8265
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6305"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            119..1087
                     /locus_tag="VGD38_08415"
     CDS             119..1087
                     /locus_tag="VGD38_08415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728075.1"
                     /translation="MNRLKRAHIAILVLIVLLFPSIETGLAQSKKKKMPSGTPVLWQR
                     PTDIGSRDLFLGPGGARMRPDLRRITFIKEEKGGYSKKYRVRDGSGREWVVKIGKEAQ
                     SETSAIRLLWGVGYLTEVNYLVPRVTIPGKGTFSNVRFEARPEEWDRLGEWKWKQNRF
                     LRTPEYQGLKIMMALINNWDLKDSNNVIVQVPTNRGNELRYMISDLGATFGHASTTPI
                     FWRLTRSRNNPKNYAKSEFLERVKGNRVVLHYGGKNRGLMKDITVDDAVWMGGWLSQL
                     SDQQIRDAFRAANYTPAQIDLLTRTVRARTSELVSLRPNIQIGSDE"
     gene            1084..2019
                     /locus_tag="VGD38_08420"
     CDS             1084..2019
                     /locus_tag="VGD38_08420"
                     /inference="COORDINATES: protein motif:HMM:NF027640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4956 domain-containing protein"
                     /protein_id="HEY0728076.1"
                     /translation="MKPQRRKEVLTLVVVFVGVLLISALAVYFISNRGTSTREFTQVQ
                     PPATEDREPLSRAATPVPTPTPAANETFLDHLMGTTSQGDANVRAETWSESLGRITLR
                     LLLAALLGAALAYRPRRKILALKRNPYVSQTQILLAIVAAALMIIVGDNAARAFGIFA
                     AVSLVRFRTNIRDPKEVTVLLICMALGLAAGVGRWDLGLALAIFSLIVLWILEMREPE
                     QVFRSMELKVITKNVVSTQHALRELFRKYGFDKELRAVDREASDESPGSIVYSVDVSP
                     TISTDELSADILALDGQNVDGIEWNQKKSYSYLYQ"
     gene            complement(2022..2615)
                     /locus_tag="VGD38_08425"
     CDS             complement(2022..2615)
                     /locus_tag="VGD38_08425"
                     /inference="COORDINATES: protein motif:HMM:NF015142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004721 - phosphoprotein phosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HEY0728077.1"
                     /translation="MSPTRRSYRSIFAVLTFVFATSITAVAQQTDIRIKNFGQMDDRF
                     YRGGQPKEEDYKHLAAIGIKTVIDLRNDPKEYEKREVEAAGMRYVNIPMSDKSYPDTA
                     SIDQFLKLIDDPSTGKFFVHCAGGRHRTGVIGAVYRFNLYNWNYDQVYAEMKKFDFYT
                     RWGHGNMKKFVQDYAATRNATASTAAGAATITTTINQ"
     gene            complement(2693..5143)
                     /gene="lon"
                     /locus_tag="VGD38_08430"
     CDS             complement(2693..5143)
                     /gene="lon"
                     /locus_tag="VGD38_08430"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: protein motif:HMM:TIGR00763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HEY0728078.1"
                     /translation="MAIVKDAEFTEAIETTDNDQQLQIPSELPVLPLRDIVIYPFMIV
                     PLFVSREKSIRAVDEALGENRMILLASQKDLDKEEPTAEDLYSVGTAAVIMRMLKLPD
                     GRIRILVQGLARAHVETVDATGEYLRSRVSVMQEVLPPERSLEVEALVRNVRASMEKA
                     INLGKNISPEVMAIIANLDDAGRLADLSASNLELKVEDAQSVLDIADTTARLRRVNDL
                     LNKEIEVLTVQQEINTQARADIDRSQREFYLRQQLKAIQSELGEGNELAEEIAQFKEK
                     IEAAKMPKPAEEEALRQLKKLERMHPDAAETATLRNWMEIMTDLPWSRSSVDNLDLQK
                     AERVLNEDHYGLEKVKDRIIEALAVRKLKEKPKGPILCLVGPPGVGKTSLGRSIARAL
                     DRKFVRLSLGGVHDEAEIRGHRRTYVGAMPGRIIQAVQQAGTNNPLIMLDEIDKVGAD
                     FRGDPSSALLEVLDPEQNNSFRDNYLGVTFDLSNAIFMTTANVLDTIQPALRDRMEVI
                     RIAGYTEEEKREIAIRHLLPKQMEENGITSRDLHVSKTALTAIIQQYTQEAGLRQLER
                     EISRICRKVARKIAEGHKGGIRVSLKNVHEFLGAPKIIPEEILKKDQIGVATGLAWTA
                     VGGDILFIEALKMKGKGNLVLTGQLGDVMRESAQAAYSYAKSRAKELDIAEEDFNNYD
                     LHIHIPEGAIPKDGPSAGITLATAMVSALSTRPVRKDVAMTGEITLRGNVLPIGGVKE
                     KVLAARRARVTTIILPQQNRRDLDEVPKEPFKDIRFVFVDNMRQVFREALGEKVIPPL
                     TTGTRPQRMPQAASPRPA"
     gene            complement(5155..5628)
                     /locus_tag="VGD38_08435"
     CDS             complement(5155..5628)
                     /locus_tag="VGD38_08435"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEY0728079.1"
                     /translation="MIKPIRATGLERLELQRLRDRVGRLYVALEEATEAENPLASGAW
                     APPVDLCETEDKIFLRVELPGVTADQIKIGLTNTKLRIWGEKKRRQARRRIISHLCSE
                     RSYGKFNRVVRLRWTICVNNATAELKGGMLYIYLPKIEDRRGSEVMVQVKDASTE"
     gene            complement(5638..6096)
                     /gene="nrdR"
                     /locus_tag="VGD38_08440"
     CDS             complement(5638..6096)
                     /gene="nrdR"
                     /locus_tag="VGD38_08440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HEY0728080.1"
                     /translation="MKCPFCAYLEDKVVDSRESREGDAIRRRRECLRCERRFTSYERI
                     DEIPYMVVKKDGRRETFDRNKVMAGLLRACEKRPVASAKLESIVNAIEKYVQESPERE
                     RPTSKIGEMIMRRLKELDKVAYVRFASVYLEFEDVSEFMTELKQLVQKRR"
     gene            complement(6099..7139)
                     /locus_tag="VGD38_08445"
     CDS             complement(6099..7139)
                     /locus_tag="VGD38_08445"
                     /inference="COORDINATES: protein motif:HMM:TIGR00374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase transmembrane
                     domain-containing protein"
                     /protein_id="HEY0728081.1"
                     /translation="MKTKGYRKYVEFAVLCLLAAALLWWFGRNLDWREVRHSVGTADP
                     LLLAIAVIMICVAYLVRAFRWGALLKPLSAARLADLFTATAIGFSVVFLLGRTGEVVR
                     PVVLPMRDPRVRPSAAIVTILVERIYDSIAVALMFALTLIWFTPPVAFDISFSQVRTI
                     GFLILGGLIFNVLFLIWFRKNSARLLDALNRRFSRWRFIPQRLTKLVIGLLEQLSGAL
                     RVLVNAKELAVTVGWTVLLWLGIGGANLLVLRAFHLDVGIAETAFVLGWSMLGSVVPT
                     PGGAAGAFHAATAAALLFLGVKKETAAALSIVLHLVDFGPAVIFGLFYFIRGDLSISR
                     LRTLISPANAEG"
     gene            7350..7952
                     /locus_tag="VGD38_08450"
     CDS             7350..7952
                     /locus_tag="VGD38_08450"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0728082.1"
                     /translation="MGAVKALAVSEGAELVRRCRAGDGAAWEEIVQTYSRRIYNLAYR
                     FTSRADTAEDLTQEVFVRVYRSLDQYDPKQGDLQNWLMRLARNLIIDDYRKRQRTPHD
                     NQADDLADHSYHLHTRTNSVQTEMERRELGAQVQAGIDKLSPDLRTCVILRDIEELSY
                     QEIVDLLKIPEGTVKSRINRGRIELAKILRRMKVVAMSEV"
BASE COUNT         1803 a         2306 c         2309 g         1847 t
ORIGIN      
        1 tccaacccga cgggcggtat acccctgtaa taagcgactc cgaacccttc aatagtcagg
       61 aatactttat cggacgcccc ggcagcgact aacaactaac gcatccggag ttagaaaaat
      121 gaatcgtttg aagagagcgc acatcgcgat ccttgtgctg atcgtgctgt tgtttccatc
      181 tatcgaaact ggtctggccc aatcaaaaaa gaaaaagatg ccgtcaggta cgcccgtgct
      241 ttggcaaagg ccgactgaca tcggctcgcg cgatctcttt cttggtccag gcggcgcgcg
      301 aatgcgtccc gacctgcggc gcatcacgtt catcaaggaa gaaaagggcg gctactcgaa
      361 gaagtatcgc gtacgcgacg gttcgggccg cgagtgggtc gtaaagatcg gcaaagaagc
      421 gcagtcggaa acgtcggcaa tcagattgtt gtggggcgtc gggtatttaa ccgaagtcaa
      481 ctatctcgtc ccgcgcgtca ccattcccgg gaagggcacg ttttcaaacg tgcgtttcga
      541 agcgcggccc gaggaatggg atcgactcgg tgagtggaag tggaaacaga atcgtttcct
      601 gagaacgccg gagtaccagg gcctcaagat catgatggcc ctcatcaaca actgggacct
      661 gaaagattca aacaacgtga tcgttcaggt gcctacgaat cgcggcaacg aactccgcta
      721 catgatcagc gacctcggcg cgacctttgg tcacgccagt accacgccga tcttctggcg
      781 cttgacgcgc agccgcaaca acccaaagaa ctatgcgaaa tcggagtttc tcgaaagggt
      841 caaaggcaat cgcgtcgtgt tgcactacgg cggaaagaat cgcggcttga tgaaggacat
      901 cactgtcgac gacgcggttt ggatgggcgg ctggttatct caacttagcg atcagcagat
      961 cagggacgcg tttcgagcgg cgaactacac accggcgcaa atcgatctgc tgacgcgcac
     1021 tgtgcgcgcg cgaacgagtg aattggtaag tctgcggcca aacattcaga tcggtagcga
     1081 cgaatgaagc cgcagcgaag aaaagaagtc ttaacactgg tcgtcgtttt tgtcggcgta
     1141 cttttaatca gcgcgctggc tgtttacttc atcagcaacc ggggaacgtc gacgcgtgag
     1201 ttcacgcagg tccaaccacc ggccacggag gaccgagaac cgttgtcgcg agcagcgacg
     1261 ccagttccaa ctccaacgcc ggccgcgaac gagacctttc tcgatcatct gatgggcaca
     1321 acaagccagg gcgatgctaa cgtgcgcgcc gaaacgtgga gtgagagtct tggacgaatc
     1381 acactgcggc tactgctggc ggcgttgctc ggcgcggcct tggcttatcg tccacgccga
     1441 aagattctcg cgctcaaacg caatccttac gtttcgcaaa cacagatcct gctggcgatc
     1501 gtggccgcgg cgttgatgat catcgtgggc gacaacgcgg cgcgcgcgtt tggtattttc
     1561 gcggccgttt cgctggtccg ctttcgcacg aacattcgcg atcccaaaga ggtcacggtc
     1621 ttattgatct gcatggcgct cgggctcgcc gcgggcgtcg gccgttggga cctgggactg
     1681 gcgctggcga tcttttcgtt gatcgtgctt tggatactcg agatgcgtga accggaacag
     1741 gtgtttcgct cgatggagct gaaagtgatc acgaagaacg tcgtgtcaac acagcatgcg
     1801 ttgcgcgagc tgttcagaaa gtacggattc gataaagagt tgcgcgcggt ggatcgcgaa
     1861 gcgagcgacg aatcgccggg gagtattgtt tactcagttg acgtgagtcc gactatcagc
     1921 actgacgagc tcagtgccga cattctggcg ctggatggcc agaatgtcga cggcattgag
     1981 tggaatcaga agaagagcta ttcgtacctt taccagtagg tttactggtt gatggtggtg
     2041 gttatcgtgg cggcgccggc cgcagttgat gcggtcgcgt tgcgggtggc ggcgtagtcc
     2101 tgcacgaatt tcttcatgtt gccgtgtccc caacgagtgt agaagtcaaa cttcttcatt
     2161 tccgcgtaaa cctgatcgta gttccagttg taaagattga agcggtagac agcgccgatg
     2221 acgccggtgc gatggcgtcc gcccgcgcag tgaacgaaga acttgccggt tgatggatcg
     2281 tcgatgagtt tcagaaactg atcgatcgac gcggtatcgg gataggattt gtcgctcatc
     2341 ggaatgttca cgtatcgcat tccggcggct tcaacctcgc gcttctcgta ctctttggga
     2401 tcgttgcgga gatcgataac ggtcttgatg ccaatcgcag ctaagtgttt gtagtcttcc
     2461 tctttcggct gaccgcctcg atagaagcga tcgtccattt ggccgaagtt cttgatcctg
     2521 atgtctgttt gctgggcaac agcagtgatt gaagtagcga aaacgaaggt aagaacggca
     2581 aagatagagc gatagctgcg ccttgtagga ctcattcaaa ctccttgact tgcttttttt
     2641 gacgacgggt tttgctgtga ttcccggatc gtcgcgctag ttgtatcaca tttcacgctg
     2701 gccggggact ggcagcctgc ggcattcgct gcggccgcgt tcccgtagtc agcggcggaa
     2761 tcactttttc gcccaatgct tcacgaaaaa cctgccgcat attatcaaca aaaacaaagc
     2821 gaatatcctt gaacggctct ttcggcactt cgtccagatc gcggcgattc tgctgcggga
     2881 gaattatcgt cgtgacccta gcacgccgcg ccgcgagcac tttttctttc acgccgccga
     2941 tcggcaacac gttgccgcgc agagtgatct cacccgtcat cgcgacgtct ttgcgtaccg
     3001 gacgcgttga taaagcggag accatcgcgg ttgcgagcgt gatgcccgcc gacggtccgt
     3061 ctttgggaat cgcgccttcc ggaatgtgaa tgtgcagatc gtagttgttg aaatcttctt
     3121 cggcgatgtc gagctctttc gcgcgcgact tcgcgtatga ataagccgcc tgcgccgact
     3181 cgcgcatcac gtcgccgagt tgtccggtca aaacgaggtt gcccttgcct ttcatcttca
     3241 acgcttcgat gaagaggatg tcgcccccga cagcggtcca cgccaaaccc gtcgcgacgc
     3301 cgatctgatc tttcttgaga atctcttcgg gaatgatctt cggcgcgccg agaaactcgt
     3361 gaacgttttt cagcgaaacg cgaatgccgc ctttgtggcc ttcggcgatc ttgcgtgcga
     3421 ccttgcgaca gatgcggctg atctcgcgtt cgagttgtcg cagtccggct tcctgcgtgt
     3481 actgctgaat gatcgccgtc agcgcggttt tcgaaacgtg cagatcgcgc gacgtgatgc
     3541 cgttctcttc catctgtttc ggcagcagat gccttatcgc gatctcgcgc ttctcttctt
     3601 cggtgtaacc ggcgatgcgg atcacttcca tgcgatcgcg caacgcgggc tggatcgtgt
     3661 cgagcacgtt cgccgtcgtc atgaagatcg cgtttgatag atcaaacgtg acgccgagat
     3721 agttatcgcg gaaactattg ttctgttccg ggtcgagcac ttcgagcagt gccgacgacg
     3781 gatcgccgcg gaagtccgcg ccgactttgt cgatctcgtc gagcatgatc agcggattgt
     3841 ttgtgccggc ttgttgcacg gcttgaatga tgcgacccgg catcgcgccg acgtaagtcc
     3901 ggcgatgacc gcgaatctcc gcttcgtcgt gaacaccgcc caacgagagc cgcacgaatt
     3961 tccgatccag cgcgcgcgcg atcgatcttc ccagcgaagt tttacctacg cccggaggac
     4021 caacgagaca cagaatcgga cctttgggtt tctcttttaa cttgcgcacg gcgagcgctt
     4081 cgataatgcg gtccttaact ttctcgagac cgtagtgatc ttcgttgagc acgcgctccg
     4141 ctttttgcag atcgagattg tcaaccgaag aacgcgacca cggcagatcg gtcatgatct
     4201 ccatccagtt tcgcagcgtg gcggtttcgg ctgcgtccgg atgcatgcgt tcgagttttt
     4261 tgagttgccg cagtgcttct tcctcggcgg gtttcggcat cttcgcggct tcgatcttct
     4321 ctttgaactg cgcgatctct tcggcgagct cgtttccctc gccgagttcg ctttgaatcg
     4381 ccttcagttg ttgacgcaga taaaactcgc gttgcgaacg atcgatgtcc gcgcgggcct
     4441 gcgtgttgat ttcctgctga acggtcagga cttcgatctc tttgtttagc agatcgttga
     4501 cgcggcggag acgcgcagta gtgtcggcga tgtccaggac ggactgcgcg tcttcaactt
     4561 ttagttcgag atttgaagcg gaaagatcgg cgagccgtcc cgcgtcgtcg agattggcga
     4621 tgatggccat cacttccggc gagatgttct tgccgagatt gatcgccttc tccatcgacg
     4681 cgcgcacgtt tcgcacgagc gcttcgactt ccagcgaacg ctccggcggc aacacctcct
     4741 gcatcacact cacacgcgaa cgcagatatt caccagttgc atcaaccgtt tcaacgtgcg
     4801 cgcgcgccaa tccctggacc aggatgcgga tgcggccgtc gggcagtttc aacatgcgca
     4861 tgatcaccgc cgcggtgccg accgaataaa ggtcttctgc cgtcggctct tccttatcga
     4921 gatctttctg cgaggcgagc agaatcatgc ggttctcgcc cagcgcctcg tccactgccc
     4981 tgatagattt ttcacgcgac acaaacagcg gcacgatcat gaacgggtag atcacgatgt
     5041 cgcgcaaagg cagtaccggc agttcactcg ggatttgtaa ctgctgatcg ttatccgtcg
     5101 tttcgattgc ttccgtaaac tctgcgtctt ttactattgc catattaaat atccctactc
     5161 cgtactcgca tccttaactt gaaccattac ctccgaaccg cggcgatctt caatcttggg
     5221 gagatagata taaagcatgc cgccttttaa ctccgctgtg gcgttgttaa cgcagatggt
     5281 ccaacgcaac cgcaccacgc ggttgaactt tccataactg cgttccgagc aaagatgcga
     5341 aatgattcgc cgtcttgcct gtctgcgttt tttctcgccc cagattctca acttcgtatt
     5401 cgtcagacca atctttatct gatccgcggt cacgccgggc agttccacgc gaaggaaaat
     5461 cttgtcctcc gtttcgcaaa gatctaccgg cggcgcccac gctcccgagg ccagcgggtt
     5521 ctctgcttca gtcgcctctt ccagcgcgac gtagagacgt cccacgcgat cgcgcaaacg
     5581 ctgtaactca agtcgttcta atcccgttgc tcgtataggt ttgatcatgt ccagtcctta
     5641 ccgccgtttt tgcacgagtt gcttgagctc cgtcataaac tccgacacgt cctcaaactc
     5701 gagataaacc gatgcaaagc gaacataggc gactttgtcg agttctttca agcggcgcat
     5761 gatcatctct ccgattttac tcgtgggccg ctcgcgttcg ggagactcct gcacatattt
     5821 ttcgattgca ttcacaatgc tttcaagctt cgccgaggct accggacgtt tttcacaagc
     5881 ccgcaacaag ccagccatga ctttgttgcg atcgaaagtc tcgcggcggc cgtctttctt
     5941 gaccaccatg taaggtatct cgtcgatacg ctcgtaagac gtaaagcgcc gctcacaacg
     6001 aagacactcg cggcgccggc gaatggcgtc gccttcgcgc gactcgcgtg agtcgaccac
     6061 tttgtcttcg aggtatgcac agaaaggaca tttcatattt aaccctccgc gttcgccggc
     6121 gagatcaacg ttcgtaatcg tgaaatgctc aagtcgccgc gaatgaaata aaagagtccg
     6181 aatataactg ctgggccaaa gtcgacgagg tgtaacacga tcgagagcgc cgcggcggtc
     6241 tcttttttga cgccgagaaa caaaagtgcg gccgcagtcg cagcatgaaa cgcgcccgca
     6301 gcgccgccgg gtgtcggcac caccgatccg agcatggacc agccaagcac gaaagccgtt
     6361 tccgctatgc cgacgtcaag atgaaaggcg cgcaacacca acagattcgc gccgccgatt
     6421 ccgagccaaa gcaggacggt ccagccgact gttaccgcaa gctccttcgc gttcaccaga
     6481 actcgcaacg cacccgataa ctgctcgagc agcccgatta cgagttttgt caggcgctgc
     6541 ggaatgaatc gccaacggga aaaacgtctg ttcagggcgt cgagcagtct ggccgagttc
     6601 tttctaaacc agatcaaaaa cagcacgttg aagatcaggc cgcctagtat tagaaacccg
     6661 atggttctca cctggctgaa cgagatatcg aacgccacgg gcggcgtgaa ccagatcagc
     6721 gtgagcgcaa acatcagcgc gacggcgatg gaatcgtaaa tgcgctcgac gaggatcgtg
     6781 acgatggccg cgctcggtct gacgcgcgga tcgcgcatcg gcaggacgac tggtctgacc
     6841 acttcgcccg ttcggccgag aagaaagacg acgctgaacc cgatagccgt ggcggtaaaa
     6901 aggtctgcta gtcgcgcggc gctgagtggt tttagcagtg cgccccaacg gaaagcccgc
     6961 acgaggtagg cgacacagat catgattacc gcgatggcaa ggagcagcgg atcggcggtg
     7021 ccgaccgagt gacgcacctc acgccagtcg aggttccggc caaaccacca aagcaacgcc
     7081 gctgccagca ggcagagcac tgcaaactca acgtatttgc gataaccttt ggtcttcaac
     7141 tctgtgttga gtgaaccaca acatgttggg ccggtcgcag agcctactac actgaacgaa
     7201 gtctcggcaa ggagcactgt tctaacacgg atttttggga tacagtttga gcgggaactt
     7261 tagtctaaat cctgtcgtaa acgcctcttg tcaacaggtt cgcggccttt gacggagttc
     7321 ccgaagcaca ggtacctgga gaagatacgg tgggggctgt taaagctttg gcagtcagtg
     7381 aaggagccga gctggttcgc aggtgtcgcg cgggcgacgg tgcggcgtgg gaagagatcg
     7441 ttcagaccta ttcccggcgc atttataacc tcgcttaccg ttttacctct cgcgctgaca
     7501 ccgcggaaga tctgacgcag gaagttttcg tcagagtcta tcgctcttta gatcaatacg
     7561 acccgaagca gggcgacctg caaaactggc tgatgcggct cgctcgtaat ctgattatcg
     7621 acgactaccg caaacgccag cgcacgccgc acgataacca ggccgacgac ctcgccgacc
     7681 acagttatca cctgcacacg cgaaccaatt cggtgcagac ggaaatggaa cgtcgcgaac
     7741 tcggtgcgca agtccaggcg ggcatcgaca agctctcgcc ggatctgcgc acgtgcgtga
     7801 ttttgagaga cattgaagag ctcagctatc aggagatagt ggatcttttg aaaataccgg
     7861 aagggaccgt taagtcccgc attaaccggg gccggattga gttggccaag atcctccggc
     7921 gcatgaaagt ggttgcgatg agcgaagtgt aaacgagggg acggaagtta acagaagcgg
     7981 caggaaagcg aaacacgatg ctttgtgtgg attttgagac tttattgacc gattacattg
     8041 agggcgtaac cggtccagaa accaaccggc aaatggcgga acacgcgatg aagtgtcccg
     8101 tctgccatga aaccttgtcg gcagtcaaaa gcactgtaac ggcttgccga atcgcaagtg
     8161 tgcctgagcc ctcccgagat ttagacgcac gcattctcca gaaaacagtt cccaacacag
     8221 cgatgacctg cgaagagttt gaggagtttc tcacggacta cctcg
//
LOCUS       DASWTX010000554         2467 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_313089, whole genome shotgun sequence.
ACCESSION   DASWTX010000554 DASWTX010000000
VERSION     DASWTX010000554.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2467)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2467)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2467
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313089"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            159..1145
                     /locus_tag="VGD38_08455"
     CDS             159..1145
                     /locus_tag="VGD38_08455"
                     /inference="COORDINATES: protein motif:HMM:NF024785.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HEY0728083.1"
                     /translation="MISRIPAGMRYYIGAEARLRRTIEDTAMSVFAAWSYEEVITPSV
                     DYYDLFEQGMGQAEAQRGFRFTDNDGRLLALRPDVTSSVARMAATLLSERARPLRFCY
                     AAPVFRQQPQSHAEWRRENTQLGCELIGVGGHEADLEVLRLAAEILARLNLQSSYVIT
                     INNVDIFNGVAAHLGLPAVAREQLRRLIDTRETAELQRFLNGLSNSEGRAFLQPTQLT
                     GKREVITAAREAITNSRSVAALNSLEELWSALESLELAEHFEIDLSDVSSLDYYTGLS
                     VKVFVRGAGTSVGRGGRYDGLTGNFGRVEPAVGFVLNLDALTEVLARRMSNV"
     gene            1145..1765
                     /gene="hisG"
                     /locus_tag="VGD38_08460"
     CDS             1145..1765
                     /gene="hisG"
                     /locus_tag="VGD38_08460"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR00070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEY0728084.1"
                     /translation="MITIAIAKGRMQDDALALLARAGVRISEEARNSRRLAIMDESGR
                     YRFIFVKPADVPVYVEHGIADCGVVGRDVLLESQADLLLPLDLGIARCRIVVAAADAE
                     IMTRSLGMLRVATKYSQIAGAHFGARGIPVEIIQLSGSVELAPALGLADLIVDLVETG
                     RTLRENGLTVVDEIAESTGKLVVNRASYQLKPGLITELVRALESVV"
     gene            1762..>2467
                     /gene="hisD"
                     /locus_tag="VGD38_08465"
     CDS             1762..>2467
                     /gene="hisD"
                     /locus_tag="VGD38_08465"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF013013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEY0728085.1"
                     /translation="MIRILRHGEVDELKSRLAARSVALDSELLARVSAIIEDVRTRGD
                     EALIEYTRRFDGVELQASELRVSEEVLRSSAAKVDRDTLAALRVAIKNVRAFHERQVE
                     QSWEISPAEGVRLGQRIIPLERVGLYVPGGTAAYPSSIVMNVIPAQVAQVERIVVATP
                     PRTLAENPAVGAALLELNVKEIYAAGGAQAIAALAFGTKSVPRVDKITGPGNKYVAAA
                     KKLLFGVVGIDAIAGPS"
BASE COUNT          453 a          637 c          845 g          532 t
ORIGIN      
        1 taaaccttct cgccgaaccg ccgtgtacgg acccgtatgc acggtggtgt gacagggaaa
       61 gctggcgaca gcctacctat gtcgatttga gttcaagctt tagcttgtgc ggtcggcagc
      121 cttaaggctg aactcagaac gctgaaactt cttttccgat gatttcgaga atcccagctg
      181 gaatgcgtta ctacatcggc gccgaggcac ggctgcggcg cacgattgaa gacaccgcga
      241 tgtccgtgtt cgcggcgtgg tcctatgaag aggtgatcac gccgtcggtc gattattacg
      301 acctgttcga acaaggcatg ggccaggcgg aggcgcagcg cggtttccgg ttcaccgaca
      361 acgacgggcg cttgctggcg ctgcgtccgg acgtgacgag ctcggtcgcg cgtatggcgg
      421 cgacgttgtt atccgaacgc gcgcggccgt tgcgcttttg ttacgcggcg ccggtgtttc
      481 ggcagcagcc gcagtcgcat gctgagtggc gccgcgagaa cacgcagctc ggttgtgagt
      541 tgatcggcgt cggcgggcac gaggcggact tggaagtgtt gcggctggcg gcagagattc
      601 tggcgcgtct gaatctgcaa tcgagttatg tgatcaccat caacaacgtc gacatcttca
      661 atggtgtggc ggcgcacctg ggactgccgg cagtcgcgcg agaacagttg cgccgcttga
      721 tcgacacgcg cgaaacggcg gagttgcagc ggtttctcaa cggtctttcc aactccgaag
      781 ggcgcgcttt tctgcagccg acgcaactca ccggcaagcg tgaagtcata actgcggccc
      841 gtgaggcgat tacgaattct cgctctgtgg ccgccctcaa ttcacttgaa gagctctggt
      901 ctgcgctcga atcgctcgag ctagcggaac atttcgagat cgacctcagc gacgtttcga
      961 gtctcgatta ctacactggt ttgagtgtga aagtgtttgt gcgtggcgcg ggcactagcg
     1021 tgggtcgtgg cggacgttac gacggtctaa ccggaaactt cggccgcgtt gagcctgccg
     1081 ttggctttgt gctcaatctc gacgcgctga cggaagtgct cgcgcgaagg atgtcaaacg
     1141 tctgatgatt acgattgcga tcgcgaaagg gaggatgcag gacgacgcgc tggcgctgct
     1201 ggcgcgcgcc ggcgttcgca tttcggaaga ggcgcgcaat tcacggcgtc tcgcgatcat
     1261 ggatgagtcg ggaaggtatc ggtttatctt cgtgaagccg gcggacgttc cggtttacgt
     1321 cgagcatggg attgcggatt gcggcgtggt tggaagggat gtgctgctcg agtcgcaggc
     1381 ggatcttttg ttgccgctcg atctcgggat cgcgcgctgc cggatcgtcg tggcggcggc
     1441 tgatgcggag atcatgacgc gtagtctcgg catgttgcgg gtcgcgacga agtattcgca
     1501 gatcgcgggc gcgcacttcg gcgcacgcgg cattccggtc gagatcattc agctttcggg
     1561 atcggtagag cttgcgcctg cgttggggct tgcggatctg atcgttgatt tggtggagac
     1621 cggcagaacg ctgcgtgaga acgggttgac cgtggtcgac gagattgctg agtcgacggg
     1681 caagttagtc gtgaatcgcg cgagttacca actcaagccg ggattaataa cagaattggt
     1741 tagagctttg gagagtgtgg tttgattcga attctgcgcc acggtgaggt tgatgaactg
     1801 aagtcgcggt tagcggcgcg ttcggtggcg ctcgattcgg agttgctcgc gcgggtgtcg
     1861 gcgatcattg aagatgtgcg aacgcgtggt gacgaggcgt tgattgagta caccagaagg
     1921 ttcgacggtg tcgagctaca ggcgtctgag ttacgagtca gcgaagaggt gctgcgtagt
     1981 tctgcggcga aggtcgatag agacactctg gctgcgctcc gagtggcgat taaaaacgtc
     2041 cgggcgtttc acgagcggca ggtggagcag tcgtgggaga tttcgcctgc ggaaggcgtg
     2101 cggttgggcc aacgtataat tccgctcgag cgtgtcgggt tgtacgtgcc cggaggaacg
     2161 gcggcttatc cgtcctcgat cgtgatgaat gtcattccgg cgcaggtggc gcaggtcgaa
     2221 cgtatcgtcg tcgcaacgcc gccccgaaca ctcgccgaga atcccgccgt aggcgctgcc
     2281 ttgctggaat tgaacgtcaa agagatctat gcggctggag gcgcgcaggc gatcgcggcg
     2341 ctcgcattcg gaacgaaatc cgttccgcgt gtcgataaga tcaccggacc gggaaacaag
     2401 tacgtcgccg ccgccaagaa gctgctcttc ggcgtcgtcg ggatcgacgc gatcgccggc
     2461 ccaagcg
//
LOCUS       DASWTX010000555         3619 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_159284, whole genome shotgun sequence.
ACCESSION   DASWTX010000555 DASWTX010000000
VERSION     DASWTX010000555.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3619
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159284"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1940
                     /locus_tag="VGD38_08470"
     CDS             <1..1940
                     /locus_tag="VGD38_08470"
                     /inference="COORDINATES: protein motif:HMM:NF019239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728086.1"
                     /translation="PRERDSFSVAFHEYVHSRLDDYVPNAPVWLNEGLAEFYGSLQFS
                     GGEAVLGVTIPYYMRLLRSQELLPLETLFSIDQRSPHYNEQDKTGIFYGQSWALVHYL
                     MLGGGQARQDQFRRFLQRAGRGDDVTKALEDSFGMSLDTIDKELRAYVRHGELPSLRL
                     TSVNDPQAYASYTAMQRVALSEAEANYYLGDLLLHTGRGEDAERYFKLAIALDPGLTN
                     AYAALGQLAVYQSRFADAKKYLQRATTSPQHYLVHYHYAWLLSRESVSPNGRISGYPL
                     EAAAIMREQLSQTIKLAPNFAPAYFLHAFVDLVTHHNLDQALQMAEKARRLEPARSGN
                     TMLVAQIHVARSDEAAARALLEPLTRDSDPRIKSEAQNLIESLNNGSAGNRSRASVSV
                     PLAAEPVAAGPSRMLGDGSSSSAARDGHTIQNSGSLPTVDEVLARYVEALGGAKAINA
                     VTSRVTKGTIDIPGLSRGGSFEVYQQAPNKSLTVMDAYPLGRVSVGYNGRSGWSQTQQ
                     GLQPIKAAAELASLQRDSDIYSPVRAKSNYAKVTLAGTSHIGYREVYVLDLKPAVGAV
                     ERLYLDVKTYLPARMNTARKLGAALAPVEVYFDDWQTVDGIKFPFSISQRYDKLTLSF
                     TVKEIRHNVPLDAKMFEPPIK"
     gene            complement(1989..>3619)
                     /locus_tag="VGD38_08475"
     CDS             complement(1989..>3619)
                     /locus_tag="VGD38_08475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728087.1"
                     /translation="ASEQLLGKADDSGPGISLQWLLEKMPRLEKLTKEESEAYARDFA
                     AQVSDMPIQIEIIHTTLVKAAFGQTSLLKHWTKELAEQVNAKKIGHEAAYLVLEGYFL
                     QAISMQLKGVSAHCVALGTDDKHGKERISDYLQNTYAKTMKSQTSAFVEAVEFLIFST
                     VKPTMPIGSLPDGMGEREFPKAIDEIFLRADLVSAALNLISFKVDESKPRIPIEAAIQ
                     GIYGRAMFRPSDLTNSTPPNLAIAGYPAAAPTGVVQPGFGCLELIESGGKTELRDVKA
                     SPVTMAHYFWNFKSPEPAAGQPIDSSQRGGVTPVKLPVFGADKPVLAASVFDVSRLYR
                     GLPSGTKSNYRHDRFPGGNPDLGIKVEEFKFHHNPLTVDKGDAFETFFTVHHIWRLDT
                     KQNSWVVHPLFKYSGAPAKVRLTAFVASIIERAPRKDGQGGTAFGQTWDVFNRLHLWH
                     SKGSKRTFYISVDSFGPMKPVSNEGTYATTAWRENYKCRRDGHFTIDFDLEAGEYELA
                     MQSEAAFWRGPKRYEGWQSTSLAFFLHGISIERL"
BASE COUNT          794 a         1075 c         1008 g          742 t
ORIGIN      
        1 atccccgtga aagagattcg ttcagcgtcg cctttcacga gtacgtgcat tcgcgtttgg
       61 acgactacgt cccgaacgcg ccagtgtggc tcaacgaagg actcgccgag ttttacggct
      121 cgctgcaatt ctcaggcggc gaagccgtgc tcggcgtgac aatcccgtac tacatgcgtc
      181 tcttgcgcag ccaggaattg ctgccgctcg aaaccctgtt ctcgatcgat cagcgatcgc
      241 cacactacaa cgaacaggac aagacgggaa ttttctacgg ccagtcgtgg gcgctggtcc
      301 attacctgat gctcggcggc ggtcaggcac ggcaggatca gttcagacgt tttctgcagc
      361 gggccggccg cggtgacgac gtgacgaaag cgttggaaga ctctttcggt atgagtctcg
      421 acacgatcga caaagagctg cgcgcttacg ttcgtcatgg agagcttccg tcgctgcgcc
      481 tgacgagtgt taacgatccg caggcctatg cttcgtacac cgcaatgcaa cgcgtggcgc
      541 tgtccgaagc cgaagcgaac tactacctcg gagacttgct gctgcacacc ggccgcggcg
      601 aagacgccga acgttatttc aaactagcaa tcgcgctcga ccccggactg acaaacgcct
      661 acgccgcgtt gggccaactc gccgtttatc aaagtcgctt cgcagacgcg aagaagtatc
      721 tgcaacgcgc aacgacgtcg ccgcagcatt atctcgttca ctatcactat gcgtggttgt
      781 tgagtcgtga atcggtatcg ccgaacggtc gcatctcggg atacccgctg gaagcggcgg
      841 ccatcatgcg cgagcaactg tcgcaaacga tcaagctcgc gccgaacttc gcgcccgcgt
      901 atttcctcca cgcgtttgtc gatctcgtca cccaccacaa tctcgaccag gcgctgcaga
      961 tggcggagaa agcgcggcgg ctggaacccg cacggtcggg caacacaatg ctggttgcgc
     1021 agattcacgt ggctcgatca gacgaggcgg ccgcgcgtgc gttactcgag ccgcttacac
     1081 gagattcaga tccacgcatt aagagcgaag cgcagaatct gatcgagtcg ttgaacaacg
     1141 gatcggcggg gaatcgtagc cgtgcgagtg taagtgttcc gttggctgcc gaaccggttg
     1201 ccgccggccc gagccgcatg ttgggcgatg gttcgagtag cagcgccgcg agagacgggc
     1261 acacgattca gaactccggt tcgctgccga ctgtcgacga agtgctcgcg cgctacgttg
     1321 aagcgttggg cggcgccaag gccatcaacg cagtcacgag ccgtgtgacc aaaggaacta
     1381 tcgacatccc cggtctaagc cgtggcggca gcttcgaagt ctatcaacag gcgccgaaca
     1441 aaagtctgac cgtgatggac gcgtatccac tcggcagagt cagcgttggt tacaacgggc
     1501 gcagtggctg gtcgcaaacg cagcagggct tgcagccgat caaggccgcg gctgagttgg
     1561 cctcgctaca acgcgacagc gacatctatt cgccggttag ggcgaagagt aactatgcaa
     1621 aggtgacgtt ggcgggaacg agccacatcg gttatcggga agtttacgtg ctcgatttga
     1681 agccggcggt gggagcggtg gagcggcttt atctcgacgt caaaacctac ctacccgcgc
     1741 gcatgaacac agcgcgcaaa ctcggcgccg cccttgcgcc cgtggaagtt tacttcgacg
     1801 actggcagac ggtagacggc atcaaattcc ccttcagcat aagccagcgc tacgacaaac
     1861 taacgctgag cttcaccgtc aaagaaatcc gccacaacgt cccgctggac gcaaaaatgt
     1921 tcgagccgcc gattaagtag gatgacacgg ctttcctgat ccgtgtcatc cctgaaatcc
     1981 gtggcaactc acagccgctc gatcgagatg ccgtgcagga agaacgccag cgacgtcgac
     2041 tgccatccct catagcgctt cgggccgcgc cagaaagccg cctcgctctg catcgcgagc
     2101 tcgtattctc ccgcttccag atcgaagtcg atcgtgaagt gaccgtcacg ccggcacttg
     2161 taattctcgc gccatgcagt agttgcgtaa gtcccttcat tgctgacagg tttcattggt
     2221 ccaaacgaat cgaccgagat gtagaacgtc cgtttcgaac ctttcgagtg ccacaagtgc
     2281 aagcggttga aaacgtccca cgtctgccca aacgcagtcc cgccctgccc atcctttcgc
     2341 ggcgcacgct cgatgatgga cgcaacaaaa gcagtgagcc gcactttcgc cggcgcgccc
     2401 gagtatttga aaagcgggtg gaccacccag ctattctgct tcgtatccag gcgccaaata
     2461 tggtgaacgg tgaagaacgt ttcgaaagcg tctcctttat cgaccgtcag cggattgtga
     2521 tggaacttaa actcctctac tttgatacca aggtcaggat tgccacccgg aaacctgtcg
     2581 tgtctgtagt tcgacttcgt tcccgacgga agcccgcgat acagacggct cacgtcaaaa
     2641 acactcgccg caagcaccgg cttgtcggcg ccaaaaaccg gaagcttcac cggcgtaact
     2701 cctccgcgct ggctcgaatc gatcggttgc cccgccgcag gttcgggcga cttaaagttc
     2761 cagaagtaat gggccatcgt cacaggcgag gccttcacgt cccgcagttc agttttcccg
     2821 ccggactcga tcagttcgag acaaccaaaa ccgggttgga ccacaccagt gggagcagcg
     2881 gcagggtatc cggcaatcgc gagattcggt ggcgtcgagt tggtcaagtc ggaaggacga
     2941 aacatcgcgc ggccgtagat tccctgaatc gccgcctcaa tcggaatgcg aggtttgctc
     3001 tcatccactt taaacgagat caggttgagc gcggcggaga ccagatccgc gcgcagaaag
     3061 atttcgtcga tggctttggg aaactcgcgt tcgcccattc cgtccggcaa cgatccgatc
     3121 ggcatcgtgg gcttcactgt tgagaagatc aagaactcaa ccgcttcgac aaacgccgag
     3181 gtttgactct tcatcgtctt cgcataggta ttttgcaaat aatcgctgat gcgctctttg
     3241 ccatgcttat catccgttcc caaagcaaca cagtgagcgc tgacgccttt gagttgcatt
     3301 gaaattgcct ggagaaaata gccttcaaga accaaatacg cggcttcgtg tccgatcttt
     3361 ttcgcgttta cctgctccgc gagttccttg gtccaatgtt taagcagcga agtttgcccg
     3421 aacgctgcct tcaccagggt ggtatgaatg atttcgatct gaatcggcat gtctgagacc
     3481 tgagcggcga agtccctcgc gtatgcttcc gattcttcct tcgttaactt ctcgagccga
     3541 ggcatttttt ccaggagcca ttgcaacgaa atcccaggac ccgagtcgtc tgccttcccc
     3601 agaagctgct cggaagcgc
//
LOCUS       DASWTX010000556         2022 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_244974, whole genome shotgun sequence.
ACCESSION   DASWTX010000556 DASWTX010000000
VERSION     DASWTX010000556.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2022
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244974"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            155..1093
                     /gene="ligD"
                     /locus_tag="VGD38_08480"
     CDS             155..1093
                     /gene="ligD"
                     /locus_tag="VGD38_08480"
                     /inference="COORDINATES: protein motif:HMM:TIGR02779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HEY0728088.1"
                     /translation="MPEFVSPQLATLVKEAPRGDEWLHELKFDGYRLLCHVERGHVRL
                     WTRNQKDWTEKFPGIAKALKKLRVKSAILDGEVVAMDSSGRSSFQMLQQAIHKTAGKG
                     LVLQVFDVIYLEGFSLKRTPLLERKRVLEELIATADSDQVLRYSDHVEGNGPKFLKQA
                     CDFGIEGIVSKLANSVYESTRSHSWQKIKCLKRQEFVIAGYTLSDKGLPFSSLVLGVY
                     EKGKLIYAGRVGTGFSAKGRVDLKKKLDRLRRPTKPFETIPRDADLRRATWVEPKLLG
                     EVAFAEWTDEGVIRHPSFQGMREDKKATEVIREDPA"
     gene            complement(1071..1691)
                     /gene="rsmG"
                     /locus_tag="VGD38_08485"
     CDS             complement(1071..1691)
                     /gene="rsmG"
                     /locus_tag="VGD38_08485"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: protein motif:HMM:TIGR00138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEY0728089.1"
                     /translation="MQSELERFEKALLANMQSFGVELSADAVARLRAYYSLLTRWNDR
                     LHLVAPCSPEEFATRHVLESLVLLEHLPHDAKIADIGSGGGLPIIPCLVARPDLEATL
                     IESSQKKAVFLREALKETGRKATVVARRFEDIEAPDVQFVTSRALDQFIPKIPALLDW
                     APDGATLLLFGGEKLLDAERFLIPGSEKRYLFRKGLKEKAKRDLRG"
     gene            1714..>2022
                     /locus_tag="VGD38_08490"
     CDS             1714..>2022
                     /locus_tag="VGD38_08490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728090.1"
                     /translation="MIDDFVEQHKLLGKAVPEIINAYAAALDTRRVTPAATPADLEKL
                     FDEPLPEQGIPIEDILRRFREDIEPNAMGVPSPKYFGQFNPTPLPIGVWADALSSLLN
                     Q"
BASE COUNT          457 a          509 c          609 g          447 t
ORIGIN      
        1 tattattgct gccgggctgc atcaggtgat agatgttgtt gagaagtttg gttgcgtaca
       61 tcacgtttat gagcagagca acctgagtgc cgcctgcagg ttcaacatga actcgaaacg
      121 gattcagaat ctcccaggtg cacacaagac tgcgatgccg gagtttgtct cgccgcaact
      181 cgcaactctt gtcaaagaag ccccaagagg ggatgaatgg cttcatgaat tgaagttcga
      241 cggttatcgt ttgttgtgtc atgtggaacg tggtcatgta cggttatgga ccagaaatca
      301 gaaggactgg actgaaaagt ttcccggcat tgcaaaagct ttgaagaagc tgcgcgtgaa
      361 gagcgcgatt ctcgatggtg aagtggtggc gatggactcg tcggggcgca gcagctttca
      421 gatgctgcag caggcgattc acaagactgc ggggaaaggt ctcgtgctcc aggtctttga
      481 cgtgatctat ctcgagggtt ttagtttgaa acggacgccg ctgctggaac ggaagcgcgt
      541 gctcgaggag ttgatcgcga cggcggacag cgatcaggtt ttgcgttaca gcgatcacgt
      601 tgagggaaac ggtccgaagt ttttgaagca ggcgtgcgac tttggtatcg agggaatcgt
      661 ttcgaaactg gcgaactcgg tttacgagtc gacgcgcagt cacagttggc agaagatcaa
      721 gtgtctgaag cggcaggagt ttgtgattgc gggttacacg ttgtcggata agggattgcc
      781 gtttagttcg ctcgtgctgg gtgtgtatga aaaaggcaaa ctgatctacg ccgggcgcgt
      841 cgggacggga ttcagcgcga agggccgcgt tgatctgaaa aagaagttgg accggctccg
      901 gcggccgacg aaaccgttcg agacgatacc gagagatgcg gacctgcgcc gggcgacttg
      961 ggtggaaccg aagctcttgg gtgaagttgc gttcgctgaa tggaccgacg aaggcgtgat
     1021 tcggcatccg tcgtttcagg gcatgcgtga ggacaaaaag gccacggaag tcatccgcga
     1081 agatcccgct tagctttttc ctttaatccc ttcctgaata agtaacgctt ctctgacccc
     1141 ggaattagga agcgttctgc gtccagcaac ttttctccac caaataacag taacgtagct
     1201 ccgtccggtg cccagtcaag cagggcaggg attttgggga taaactggtc cagcgcgcgt
     1261 gaggttacaa attgcacatc cggcgcttcg atgtcttcga aacgccgcgc gacgaccgtg
     1321 gcctttcgcc cggtttcctt cagcgcctcc cgcaaaaaca cggccttttt ctgcgaagat
     1381 tcaatcaaag tcgcctctaa atctgggcgc gcgacgaggc agggaatgat cggcaagccc
     1441 ccgccggagc cgatgtctgc tatctttgcg tcgtgcggca ggtgttcgag taacaccaac
     1501 gattccaaca cgtgccgcgt cgcaaactct tccggcgaac aaggcgccac caggtgaaga
     1561 cgatcgttcc agcgagtgag taaactgtag tacgcgcgga gccgcgccac tgcgtccgcc
     1621 gacagttcga cgccaaacga ctgcatgttt gcgagtaagg ctttctcgaa tcgttccagt
     1681 tcactttgca tgacttagcg aaaagcatag accatgatcg acgattttgt tgagcagcat
     1741 aagctgctgg gaaaagcagt tcccgaaatc atcaacgcct acgccgcggc tttggacacg
     1801 cggcgcgtca ctccggccgc cacgcccgcg gacctcgaaa agttgtttga cgagccgttg
     1861 ccggaacagg gaattccgat cgaagacatc ctgcggcggt ttcgtgaaga catcgaaccg
     1921 aacgcgatgg gcgttccgag tccgaaatac ttcggccagt ttaatcccac gccgttgccg
     1981 atcggcgtgt gggctgacgc gttgtcgtcg ctgttgaacc ag
//
LOCUS       DASWTX010000557         2380 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_334936, whole genome shotgun sequence.
ACCESSION   DASWTX010000557 DASWTX010000000
VERSION     DASWTX010000557.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2380)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2380)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2380
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334936"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..928)
                     /locus_tag="VGD38_08495"
     CDS             complement(<1..928)
                     /locus_tag="VGD38_08495"
                     /inference="COORDINATES: protein motif:HMM:NF024790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEY0728091.1"
                     /translation="MGFTDFYKRQITVAHIFGIPVRFDYRWFVVFLLSVWLIAVNLTR
                     GGMFVGSYRLQAVSTTAAWILGVITTLGLFLSVLAHELSHAFMARAEGIEIEEIVLHP
                     FGGLARLRKEPESPGAEFRIAIAGPAASFFIGLITFVLLLPTMRSGYTIVAGVLLLLC
                     AGNILLAIFNLFPGYPLDGGRVLRAILWRRTGDIRQATRLAGICGMLIAAILIIFGIY
                     MAIAPNFRSYFMGFWSVLVGVFLFDAAYSVVKHVRVRLQNIVREAMSAPFSIEPDLLI
                     SNLIDSILPMHRQAAFPVAHDRRLHGMLSLEDL"
     gene            complement(928..2031)
                     /locus_tag="VGD38_08500"
     CDS             complement(928..2031)
                     /locus_tag="VGD38_08500"
                     /inference="COORDINATES: protein motif:HMM:NF010539.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEY0728092.1"
                     /translation="MSFIGKTKTVLGLNALRDLVSDSMAIDMGSASTIISVRGRGVVV
                     DEPSVVAINKITGEVIAYGNEAHKMQGREARDVTVIAPLVDGVVADFERTRWMLDHFV
                     RKARSGLSHFSRRAIMSVISEVTQVEQRALLAAAEEARISRVYMIEEGQAAAIGAGVA
                     LGDEHAAAVVDIGGGTTNVAAIISGSIIASRAERIGSGDIDLAIMDRLRRHRGLTIGV
                     QTAERLKLELSSAIEPEDPNKKINVRGRDVQTGSPGAVDITAAEVHAITMPIIRRIAE
                     EVRLMLTELAPEVAGDVYERGLILTGGGALLEGLPQYMQRELDLVVKVADDPRFAIVR
                     GLAQLYEEPLLLRRVARTEPHPLLDTEATAFET"
     gene            complement(2045..>2380)
                     /locus_tag="VGD38_08505"
     CDS             complement(2045..>2380)
                     /locus_tag="VGD38_08505"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEY0728093.1"
                     /translation="MQRRMLGINRELREEGFPEIGVGMGLHTGEVIVGYIGSERRSEY
                     TAIGDTVNTSQRLESNARGGEILISDATAKAAHSRYKLKPREAIMVKNRQQPVMLWEV
                     DWQKASGSF"
BASE COUNT          523 a          734 c          668 g          455 t
ORIGIN      
        1 tcaggtcttc aagggacaac attccgtgca accgccggtc atgagcaacg ggaaaagccg
       61 cctggcgatg catcggcagg atggaatcaa tcaagttgct gattaaaagg tcaggttcga
      121 tcgagaacgg cgccgacatg gcttcgcgaa cgatgttttg caaacgcacg cgcacgtgct
      181 ttaccacgct gtacgccgca tcgaacagaa aaacaccgac gagcaccgac cagaagccca
      241 taaagtagga acggaagttc ggcgcgatcg ccatgtagat gccgaagatg atcaggatcg
      301 cggcgatcaa catgccgcaa atgcccgcca accgcgtcgc ctggcgaatg tcgccggtgc
      361 ggcgccagag aatcgcgcgc aacacgcgtc cgccgtccag cggataaccc ggaaacagat
      421 tgaagattgc gagcaggata ttgcccgcgc acaagagcag tagaactcct gcgacgatcg
      481 tgtaaccgga acgcatcgtg ggcaagagca acacaaacgt gatgaggccg ataaagaaac
      541 tcgccgctgg tcccgcaatc gcgattctga attccgcgcc cgggctctcc ggctctttgc
      601 gcaggcgcgc gagtccgcca aacgggtgca gcacgatctc ttcgatctca attccttccg
      661 cgcgggccat gaacgcgtgt gaaagctcgt gggccagcac ggaaagaaaa agaccgagcg
      721 tcgtgattac gccgagaatc cacgcggccg tcgtgcttac cgcctgaagc cggtacgagc
      781 cgacaaacat gccgccgcgc gtgagattaa ccgcgatcag ccaaacgctt aataggaaaa
      841 caacgaacca gcggtaatca aagcgcaccg gaattccgaa gatgtgcgcg actgtgattt
      901 gacgtttgta gaagtcggta aaacccatta agtctcgaaa gctgtggctt cagtgtccaa
      961 cagcggatgt ggttcggtac gcgcgacccg ccgcagcaac agcggctctt cgtaaagttg
     1021 ggccaggcca cgcacgatcg caaagcgggg atcgtcagcg actttaacga cgagatcgag
     1081 ttcacgttgc atgtattgcg gcagaccttc cagcaacgcg ccgccgccgg tcaatatcaa
     1141 accgcgctcg taaacatcgc cggcaacctc cggcgcgagc tcggtcagca tcaggcgcac
     1201 ctcttcggcg atacggcgaa tgatcggcat cgtgatcgcg tgaacctcag ccgccgtgat
     1261 gtcgaccgcg cccggactgc cggtttgcac gtcacgcccg cggacgttga tcttcttgtt
     1321 cggatcttca ggctcgatcg cggaactgag ctccagtttc aatcgctccg cggtttgcac
     1381 tccgatcgtc agcccgcggt gacgccgcaa acgatccatg atcgccagat cgatgtcgcc
     1441 actgccgatg cgttccgcgc gtgaagcgat gatcgatccg ctgatgatcg cggcgacgtt
     1501 cgtcgtgccg ccgccgatgt cgaccacagc cgctgcgtgt tcatcgccga gcgctacgcc
     1561 ggctccgatc gcggctgcct gtccttcttc gatcatgtag acgcggctga tacgcgcctc
     1621 ttccgccgcc gccagcagtg cgcgttgttc gacctgcgtc acttccgaga tcacgctcat
     1681 gatcgcgcgc ctgctgaaat gcgacagacc actgcgcgct ttgcgaacga agtgatcgag
     1741 catccatcgc gttcgttcga aatccgcgac aacgccgtcg acaagcggag cgatcacagt
     1801 cacgtcgcgt gcttcgcggc cctgcatctt gtgagcttcg ttgccgtagg cgatgacttc
     1861 gccggtgatt ttgttgatgg ctacgacgga aggctcgtcg acgacaacac cacgcccacg
     1921 cacggaaatg atcgtgctgg cggagcccat gtcgatagcc attgagtcgg aaacaagatc
     1981 tcggagagca ttcaacccga ggacagtctt ggtcttgcct atgaacgaca taaaaaatga
     2041 ggattcagaa cgacccgctt gccttttgcc agtcaacctc ccacagcatc acaggttgtt
     2101 gcctgttctt gaccatgatc gcttcacgtg gctttaactt gtaacggcta tgcgcggctt
     2161 tcgccgtcgc atcactaatc agaatttctc cgccgcgcgc gtttgattcg agccgctgcg
     2221 acgtgttgac ggtatcacca atcgccgtgt attccgagcg gcgctccgag ccgatgtaac
     2281 ctacgattac ctcaccggtg tggaggccca tgccgacccc gatctccgga aagccctctt
     2341 cgcgcaactc ccgattgatg cccagcatgc ggcgctgcat
//
LOCUS       DASWTX010000558         1939 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_52319, whole genome shotgun sequence.
ACCESSION   DASWTX010000558 DASWTX010000000
VERSION     DASWTX010000558.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1939)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1939)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1939
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52319"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..497)
                     /locus_tag="VGD38_08510"
     CDS             complement(<1..497)
                     /locus_tag="VGD38_08510"
                     /inference="COORDINATES: protein motif:HMM:NF012796.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl--tRNA ligase-related protein"
                     /protein_id="HEY0728094.1"
                     /translation="MRWSRFFIPTLREDPADAEVVSHKLLLRAGLIRQLAAGIYSFLP
                     LGQRVALKVMQILREEMNAIGGQEFFLPALHPAELWKESGRWDAIGEEMFRLKDRKGA
                     DMCLGMTHEEIFTSIARHELRSYKQLPQVWYQMQLKFRDEARPKSGLMRIRTFIMKDA
                     YTFDV"
     gene            611..1054
                     /gene="rpiB"
                     /locus_tag="VGD38_08515"
     CDS             611..1054
                     /gene="rpiB"
                     /locus_tag="VGD38_08515"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF004051.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEY0728095.1"
                     /translation="MRIALASDHAGYAEKERLKTVLTDLGVEFDDLGTGSEESVDYPD
                     FARKVAEQVAHGQVAQGVLVCGSGTGMAITANKVAGVRAAVCWSEEIARLARQHNDAN
                     VLAIGARTTPVDDIPKIVRAWFSTEFEGGRHAVRVAKISEVERSN"
     gene            1054..>1939
                     /gene="glyA"
                     /locus_tag="VGD38_08520"
     CDS             1054..>1939
                     /gene="glyA"
                     /locus_tag="VGD38_08520"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEY0728096.1"
                     /translation="MTDSRNSSLADVDPVIAGAIDNEVARQANGLELIASENFVSEAV
                     LEAAGSVFTNKYAEGYPGKRYYGGCEWTDVVEQTAIDRAKELFGADHANVQPHSGAQA
                     NMSVYLAAIQYGDQILGMSLAHGGHLTHGHPMNFSGISYKVADYGVSRETEQIDYDEL
                     QRIAEEHRPKLLVCGASAYPRTINFERIGEIARGVGARMFADIAHIAGPIAAGLHPSP
                     VPHADYVTTTTHKTLRGPRGGLILCKEEHAKEIDRKLFPGVQGGPLVHIIAAKAVALG
                     EALRDDFKEYHSQVLKNAK"
BASE COUNT          404 a          541 c          612 g          382 t
ORIGIN      
        1 tcgacgtcaa acgtgtacgc gtccttcatg atgaacgtgc gtatgcgcat caggccggat
       61 ttcggccgcg cttcgtcgcg aaacttgagc tgcatctggt accagacctg cggcagttgc
      121 ttgtaggaac gaagctcgtg acgcgcgatg ctggtgaaga tctcttcgtg cgtcatgccg
      181 aggcacatgt ccgcgccctt gcgatctttg aggcgaaaca tctcttcgcc gatagcgtcc
      241 caacgtcccg attccttcca gagctcagcc ggatgcaatg ccggcagaaa aaactcctgg
      301 ccgccgatgg cgttcatctc ttcgcgcagg atttgcatca ccttgagcgc gacgcgttgg
      361 cccaacggca ggaacgagta gatgcccgcg gcgagttggc gaatgagacc cgcgcgcagc
      421 aggagtttat gggaaacgac ctcggcatct gccgggtctt cacggagtgt gggtatgaag
      481 aatcttgacc agcgcataga ccgtgcattc tcgcttagcg gctgcgagtt aggcaaattt
      541 gccggggcgg tgcgactgag ttaccatcca acttctttct ttacactcct tcaagaaggt
      601 ttaagcaacg atgagaattg ctctcgccag cgaccacgcc ggctatgctg agaaagagcg
      661 gttgaagacg gtgctgacgg atctcggcgt cgagtttgac gacctgggca ccggttctga
      721 ggagtctgtc gactaccctg acttcgcgcg caaagtcgca gaacaggttg cgcacgggca
      781 agtcgcacag ggcgtcctcg tctgcggttc cggcaccggc atggcgatca cggcgaacaa
      841 ggttgccggt gtgcgcgctg ctgtgtgctg gtctgaagaa atcgcgcggc tcgcgcgcca
      901 gcacaacgat gcgaacgtgc tcgccatcgg cgcacgcacc acgcccgtcg acgatattcc
      961 aaagatcgtg cgtgcgtggt tttcgactga atttgaaggt ggacgtcacg ccgtgcgcgt
     1021 ggcgaagatc tctgaagtgg agcgaagcaa ctaatgactg attctcgaaa ttcctcgctg
     1081 gcggacgtcg atccggtgat tgccggcgcg atcgataacg aagtggcgcg ccaggcgaac
     1141 ggtttggaac tgatcgcgtc ggaaaacttc gtcagcgaag cggtgctcga agccgcgggc
     1201 tcggtgttta caaacaagta tgcggaaggg tatccgggca agcgatacta cggcggttgc
     1261 gagtggaccg acgtcgtcga gcaaacggcg atcgatcgcg cgaaggagtt gtttggcgca
     1321 gaccacgcga acgtgcagcc gcacagcggc gcgcaggcga acatgtctgt ttacctcgcg
     1381 gcgattcagt atggcgatca gatcctcggc atgagcctcg cgcacggcgg tcacctcaca
     1441 cacggccatc cgatgaactt ctccggcatc agttacaaag ttgctgacta cggtgtttcg
     1501 cgcgagacgg agcagatcga ttacgacgag ttgcagcgga tcgcggaaga gcaccgtccg
     1561 aagttgctgg tgtgtggcgc atcggcgtat ccgcgcacga ttaactttga acgcatcggc
     1621 gagatcgcac gcggcgttgg cgcgcggatg tttgcggaca tcgcacacat cgcgggaccg
     1681 attgccgccg ggcttcatcc gtcgcccgtg ccgcacgcgg attacgtcac gacgacgacg
     1741 cacaagacgc tgcgtggtcc acgcggtggt ttgattctgt gcaaggaaga acacgcgaaa
     1801 gagatcgatc ggaaactgtt tcccggcgtg cagggcggac cactggtcca catcatcgcg
     1861 gcgaaggcgg ttgcgttagg cgaagccttg cgcgacgact tcaaagagta tcatagccag
     1921 gttctgaaaa acgcgaaag
//
LOCUS       DASWTX010000559         1893 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_245004, whole genome shotgun sequence.
ACCESSION   DASWTX010000559 DASWTX010000000
VERSION     DASWTX010000559.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1893)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1893)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1893
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245004"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..665
                     /locus_tag="VGD38_08525"
     CDS             <1..665
                     /locus_tag="VGD38_08525"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEY0728097.1"
                     /translation="RDHTGMSCFIVERTMKGFSSGTIHGKLGIRAGNTGYFSLQDVRV
                     PQENMVGEEGEGFKIAMFALEQGRYTVASGATGVIRASRDASIAYANTRETFGTKIGN
                     HQLVKQKIAEMEADYQMSHLLWLRAGYLKNEGKPNAKATSLAKWQATTRSEKAASMAI
                     EVHGANGYSNDYPVERYLRNCKAAIIYEGTRDIHTLMQADWALGLKQEKPARRTLPVW
                     KK"
     gene            complement(775..>1893)
                     /locus_tag="VGD38_08530"
     CDS             complement(775..>1893)
                     /locus_tag="VGD38_08530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728098.1"
                     /translation="DTEHAAGHHAGTAEYTGVCSLVTKTLQRCRVAVGNFVAFDTGSL
                     SNLTFFFSHVGSKDLKTENRTGAVGTTVPCAAATGVAFSSCLLGTSCDSTASVSVSLL
                     IASATSSVTGGNLWRDSNAEFFACNLGTTTSGTNCTVPILGVCPIGTTPNGSGLCCFS
                     GVASCNTTFASRCMRFGGDYDFTTCTCLGCDSCGGSPILVDVNGDGIVMTAAADGVDF
                     DLNGNGTRDRLGWTTWGSDDAWLALDRDGNGTIDKGSELFGDFTPQPPASNKNGFLAL
                     AEFDKRESGGNADGVIDERDAVFTRLRLWQDTNHNGISEPEELHSLESLQVKAFELDF
                     KESKRVDQFGNEFKYRAKVRDTAKAKVARWAWDVFLAH"
BASE COUNT          449 a          549 c          536 g          359 t
ORIGIN      
        1 agcgggatca caccggcatg tcgtgtttca tcgtcgagcg cacgatgaaa ggattctctt
       61 ccggaacgat tcacggcaag ctcggcatcc gcgccggcaa caccggctac ttctcgttgc
      121 aggacgtgcg cgtgccgcag gagaacatgg tgggggaaga gggtgagggt ttcaagattg
      181 cgatgtttgc gctcgagcag ggacggtata cggtggcgtc aggagcaacg ggcgtgattc
      241 gcgcgtcgcg tgatgcatcg atcgcgtatg caaacacgcg cgagaccttc gggacgaaga
      301 tcgggaatca tcagttggtg aaacagaaga ttgcggagat ggaagcggat taccagatgt
      361 cgcacctgtt gtggctccgc gccgggtatt tgaaaaacga gggtaagccg aacgcgaagg
      421 ccacgagcct ggcaaagtgg caagccacca cgcgtagcga aaaggccgcc tcgatggcca
      481 tcgaggttca cggcgcgaat ggttactcga atgactaccc cgtcgagcgt tacctgcgca
      541 attgcaaggc cgctatcatt tacgaaggca ctcgtgacat tcacacgctg atgcaggcgg
      601 actgggcctt gggactgaaa caggaaaagc cggcccgacg caccctgccg gtctggaaaa
      661 agtaagcaaa acagcacagc caccaaaggg cacacaaagg cacaagagaa agggacgacc
      721 ccaaaaaatt tctccctgac tcttgtgcct ttttgtgccc ccggtggtta gacgctagtg
      781 agcgagaaat acgtcccaag cccaacgtgc tactttcgct ttggcggtgt cgcggacctt
      841 ggcgcgatac ttgaactcgt tgccgaattg atccacgcgc tttgattcct tgaagtccag
      901 ctcaaacgcc ttcacttgta gcgattcaag actatgcagt tcctcaggct ccgatatgcc
      961 gttgtggttt gtgtcctgcc agagacgcag tcgcgtgaag accgcatcgc gctcatcaat
     1021 tacgccatcg gcattgccac cactctcacg cttatcaaat tcagcaagcg ccagaaatcc
     1081 gttcttgtta ctcgccggtg gttgcggcgt gaagtcgccg aacagttcag agcctttgtc
     1141 gatcgtgcca ttcccatcgc gatcgagcgc gagccacgca tcgtcggaac cccaagtggt
     1201 ccaacccaga cggtccctgg tgccgttccc gttcagatcg aagtcaacac cgtcagcagc
     1261 cgcggtcatc acaatgccgt cgccattgac gtcgaccagg atcggcgaac cgccgcagct
     1321 atcgcagccc aaacacgtgc aggttgtgaa gtcgtaatct ccgccaaacc gcatgcaacg
     1381 gctcgcgaag gtggtgttgc aactcgccac gcccgagaaa cagcacagcc ctgaaccatt
     1441 cggagtcgta ccgatgggac aaactccgag aatcgggacc gtgcagttgg tgcccgaagt
     1501 cgtcgtgcca aggttgcagg caaagaactc ggcattagag tctcgccaaa gattcccgcc
     1561 ggttacagat gatgtcgccg aagcaatcaa cagactcacc gacacactcg cggtgctatc
     1621 gcagcttgtt cccaggagac acgaagagaa ggcaacgcct gtcgccgcag cgcatggaac
     1681 cgtcgtgcca actgccccgg tgcgattctc ggttttcaga tccttcgagc cgacgtgcga
     1741 gaagaaaaac gtcaagttac tgagcgagcc tgtatcaaag gcaacgaaat tacccaccgc
     1801 cacccggcaa cgttggagcg ttttcgtaac gagagaacaa acacccgtgt actccgcggt
     1861 gccggcatga tgacccgccg catgttcagt gtc
//
LOCUS       DASWTX010000560         2798 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_159377, whole genome shotgun sequence.
ACCESSION   DASWTX010000560 DASWTX010000000
VERSION     DASWTX010000560.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2798
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159377"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1028
                     /locus_tag="VGD38_08535"
     CDS             <1..1028
                     /locus_tag="VGD38_08535"
                     /inference="COORDINATES: protein motif:HMM:NF014585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hydantoinase B/oxoprolinase family protein"
                     /protein_id="HEY0728099.1"
                     /translation="DKLVRDAVRAIPDGRYEASSFLDNDGRVMNKTIPIKVKVEVQGD
                     ALTIDFSEVADQVPGFINCGSSGGMAAARVAFKALTSPDREVNEGSFRALKVILPPGK
                     LLSAKRPAPIGGWSLSLPTVLDTIFRALAPALPGRVPAAHKGDMGGYAIFGVNPKTGR
                     RYVCQNIIGGGWGGRPFEDGASASVSMCQGDVKNTPVELQELYYPLLYECHELRPDSG
                     GAGKFRGGVGSEVRVTPLHDCYVSRNTDRIQCPPWGLHGGAPAAVNETTIQRNGTIET
                     LPGKFSQLPVHPGETITFLTAGGGGYGDPRERSADAIAHDLKLGYVSTLQAPLKPAPS
                     SSKETQQ"
     gene            1377..>2798
                     /locus_tag="VGD38_08540"
     CDS             1377..>2798
                     /locus_tag="VGD38_08540"
                     /inference="COORDINATES: protein motif:HMM:NF017076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE2 domain-containing protein"
                     /protein_id="HEY0728100.1"
                     /translation="MLGLLIALIGVAASSFDAVHELEEDAGLGLLFKLRGTKKPPSEV
                     VIVSIDRESSERLGLPDNPDRWPRSLHARLVERLAQSGAQVIVFDLYFIDPRASTEDD
                     RLALALRNAGNVILAEPLKARDIRTPSLGAVEHRIVQTIKPIPSIAQAAYASAPFVLP
                     KIPIKVTQYWSFQTAAGDSPTFPVVAFQLYVMPAYDEFLRLLRKVEPSAANAVTQTSE
                     QLRSRGILRGIREIRGVFENNPLLADRMTVELQRSQGQRDPRTAAKVQSLISMYGGAD
                     HRYLNFYGPPRTVRTFPLHEFVETSEPPRDLRGKAVFVGLSEIALNERKDSFYTTFSR
                     ADGVFLSGVEIAATAFANLLHNTPVTPITPQQLLAVVTIWGLLIAGIGRLTPTPIVPL
                     AIALVSLVYLFAAVLKFQWDGTWYPVVTPLFIQSPLAMIGAVLWNYLETNRERQNIRK
                     ALSHYVPDEVVDHLAANIVDMRRD"
BASE COUNT          584 a          799 c          813 g          602 t
ORIGIN      
        1 cagacaagct ggtgcgggat gcagtccgcg ccatcccgga cgggcgttac gaggcttcgt
       61 cttttttgga taacgatggc cgggtcatga acaagaccat accgatcaaa gtcaaagtcg
      121 aggttcaggg ggatgccctg acgatcgact tttccgaagt cgccgatcag gttccgggtt
      181 tcatcaattg cggttcttcg ggcggcatgg ctgcggcgcg ggtcgcattc aaagcactga
      241 cttcgcctga tcgggaagtc aacgagggct cctttcgtgc tttgaaagtg atccttccgc
      301 cggggaaatt gctgagcgcc aaacgacccg cgccgatcgg cggctggagt ctctctctgc
      361 ccactgttct cgacacgatc ttccgtgcgc tcgcgcccgc gttgcccggt cgcgtgccgg
      421 ccgcgcacaa gggcgacatg ggcggttacg cgattttcgg tgtcaacccg aaaaccggca
      481 ggcgctatgt ctgccagaac attatcggcg gcggttgggg cgggcgtccc ttcgaagatg
      541 gcgcatccgc ttcggtgtcg atgtgccagg gcgacgtaaa gaacacgccg gtcgagttgc
      601 aggagcttta ctatcctctg ctttacgagt gccacgagct gcggccggac agcggtggtg
      661 ccggaaagtt tcgtggcggg gtggggagtg aagtgcgcgt cacgccgctc cacgattgct
      721 acgtcagccg caacacggat cggatccaat gcccgccctg gggcctgcac ggcggcgcac
      781 cggcggcagt caacgaaacc acgatccaac gcaacggcac aatcgaaacg ttgccgggca
      841 agttcagcca actgccggtt catcccggcg agacgatcac ctttctcact gccggcggcg
      901 gcggctacgg cgatccccgt gaacgctcgg ccgatgcgat agctcatgac ctcaagctcg
      961 gctatgtttc gaccctccaa gcaccgctca agcctgcgcc atcttcgagc aaagaaacac
     1021 agcagtagat ttgccgttgc caccttggcg cggacatatc cgccacctgc ttctgagcgg
     1081 gccaatgact gctgttgcca ccgataaaat cccggttgct gcaggtatcg gataagtgtt
     1141 acgaatcgga cgatgcaata gcgagagcct gatttggttc gcccgtgaag gggatcggag
     1201 cacgggtgct gatgcccgcg ggaacgttga gaacttacgt ttggacagaa tatcgttcag
     1261 aagaatcgtt gggagatatc tcaggcttgc catagacgga atcgtactct cgtaagcaca
     1321 agctgagcct cactcacttc ggagacggaa gaatgtctcg gttgaggaaa tccctgttgc
     1381 tcggattgtt gatcgcgctc attggagtgg ctgcgagctc attcgatgcg gtgcacgagc
     1441 tagaagaaga tgccggatta gggctcttat tcaaactacg aggtacaaaa aaaccgccgt
     1501 ccgaagttgt catcgtcagc atcgatcgtg agtcgtcgga gcgcttggga ttgccggaca
     1561 atcctgaccg gtggccgcgt tcgctgcacg cgcgtctagt cgagcgcttg gcgcaaagcg
     1621 gcgcgcaggt catcgtcttc gatctttact tcattgaccc gcgcgccagc acagaagacg
     1681 accggctggc gctggccctc cgaaacgcgg gaaacgtcat cctcgctgag ccgctcaaag
     1741 ccagagatat tcgaactccg agtcttgggg ctgtcgagca tcgcatcgtc caaaccatca
     1801 agcccatccc gagcatcgca caggcggcgt atgcatcagc gccttttgtg ctgccgaaaa
     1861 tcccgatcaa agtaactcaa tattggtcgt ttcaaacggc ggcaggcgat tccccgacgt
     1921 ttcctgttgt tgcctttcaa ctgtatgtca tgccggcata cgacgaattc ctgcgtttac
     1981 tcaggaaagt cgagccctcg gctgccaacg ctgtgacgca aacgtcagaa cagcttcgat
     2041 cgcgcggcat cctgcgaggc atccgcgaga ttcgaggagt tttcgaaaac aatccacttc
     2101 tcgcagatcg gatgaccgta gaactccagc gctcacaagg tcaaagggat cctcgaacag
     2161 cagcgaaggt gcaatctttg atcagcatgt acggcggcgc ggatcatcgg tatctcaact
     2221 tctacggtcc accgcgcact gtacgaacgt tcccgttaca cgaattcgtc gaaaccagtg
     2281 aacctccaag ggatcttcgc gggaaagcgg tttttgtcgg gctttcggag atcgcgctca
     2341 atgaaaggaa ggatagcttt tacacgacat tttcacgcgc cgacggagtt tttctgagcg
     2401 gcgtcgagat tgccgccact gcgttcgcga atcttctgca taatacacct gtgactccca
     2461 ttacaccgca gcagcttttg gcagtggtta cgatctgggg cctgctgatt gccggaatcg
     2521 gtcggttgac accgactcct atcgtcccgc tcgcaatcgc gctggtcagc ctcgtttatc
     2581 tgtttgccgc ggtgttgaag tttcaatggg atggcacttg gtatccggtg gtgactccgc
     2641 ttttcattca aagtccgctg gcaatgatcg gggcggttct ctggaattat cttgagacga
     2701 atcgggaacg ccagaacata cgcaaagcgc tcagccacta tgttcccgat gaagtggtgg
     2761 atcacctcgc ggcgaacatc gtggacatgc ggcgcgac
//
LOCUS       DASWTX010000561         2863 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_52392, whole genome shotgun sequence.
ACCESSION   DASWTX010000561 DASWTX010000000
VERSION     DASWTX010000561.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2863)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2863)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2863
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52392"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..533
                     /locus_tag="VGD38_08545"
     CDS             <1..533
                     /locus_tag="VGD38_08545"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEY0728101.1"
                     /translation="IGAVTYGTASASKHKFLAERGLDHAIDYRKQDWQPELMQLTNGR
                     GVDLIIDPIGGKHWKKSYDSLRHTGRLGMFGVSAGSANGFGGKLKMLKAVVQSPWFYP
                     LPMLSRNRGVFGLNLGHMWHEPEKVAIWMRDILRGVEEEWVRPYVDQAFSFDEAAKAH
                     RYLEERKNIGKVVLVP"
     gene            complement(522..977)
                     /locus_tag="VGD38_08550"
     CDS             complement(522..977)
                     /locus_tag="VGD38_08550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728102.1"
                     /translation="MKIPIRYGLLTALGLIIWVLVAHLLVANPQSLVHTLFGPIFFNI
                     LHFAMIFLGIKALERERGEKLWFKEALKTGISIAFVYALTASLFFAGVVYFVGDRWLA
                     VEPGAATTPTRVLLLQAFAGLFFGTLIFGLIYSTVIAFFVAKRRSDSGD"
     gene            complement(980..>2863)
                     /locus_tag="VGD38_08555"
     CDS             complement(980..>2863)
                     /locus_tag="VGD38_08555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728103.1"
                     /translation="SLLALVGIGADPVRSREHILISNILNQEWSNGKDLDIAALIQKV
                     QSPSITKIGVMDLDSFFPADDRFQLAMALNNLLASPSFASWMEGEALDIPKFLHTESG
                     KPRLSIFSIAHLGDAERMFFVSLLLNQVLGWVRAQSGTTSLRAILYMDEIFGYFPPVA
                     NPPSKLPLLTLLKQGRAFGLGVVLATQNPVDLDYKGLANTGTWFIGRLQTERDKARVL
                     DGLEGIAAGVGKQFDKQEMEEILAGLTNRIFLLNNVHDDAPEVFETRWAMSYLRGPLT
                     RTQIKTLMDPLKSSAAPQAQPVTIPKIPSPAVATSAPVAQQRPQLSPDITQYYIPIRS
                     SHDAKLSYRPMLLGAAEIHYSKSKMIETAEQLTLLTLIGDGPVDLDWAEAITIDLPIE
                     DLESEPEANAQFTEVPAKASKVRSYATWRKDFASWLYLNQRLELLESPTLDVVSNPGE
                     SERDFRVRLQQIAHEQRDQAVEKLRQKYAGKFAQLEERKRRAEQAVAREAEQAKEQKY
                     QTAISFGATLLSSFMGRKRSGVLGRATTTARGVSRTMRESDDVGRAEDNVAAISQRLA
                     DLEAEFKAEVETLERSFDPTTEQLETLSLKPTKANINVKLLTLVWAPYSHDAQGAARP
                     AWE"
BASE COUNT          598 a          779 c          849 g          637 t
ORIGIN      
        1 agatcggcgc ggtcacttac ggaaccgcga gtgcttcgaa gcacaagttt ctggccgaac
       61 gaggtttgga ccacgcgatc gactatcgca aacaggattg gcaaccggag ttgatgcaac
      121 tcaccaacgg ccgcggcgtc gacctgatca tcgatccgat cggcggcaag cattggaaga
      181 agagttacga ctcgctgcgg cacaccgggc ggctcggaat gtttggtgtg tctgctggat
      241 cggcgaatgg gttcggcggc aagttgaaaa tgttgaaagc ggtcgtgcaa tcgccgtggt
      301 tttatccgct gccgatgctc agccgcaatc gcggcgtgtt tggcttgaac ctgggccaca
      361 tgtggcacga accggagaag gttgcgatct ggatgaggga cattttgcgc ggtgttgaag
      421 aagagtgggt gcggccttat gtggaccagg ccttctcgtt tgacgaagcg gcgaaggcac
      481 accgctattt agaagagcga aagaacatcg ggaaggtcgt gttagtcccc tgagtcgctt
      541 cgtcgcttcg cgacgaagaa ggcaatcacg gtcgagtaga tcaaaccgaa gatcagcgta
      601 ccgaaaaaca atcccgcgaa agcctgaagc agcagcactc gcgtcggcgt tgtcgccgcg
      661 cccggttcaa ccgccagcca cctgtcgccc acgaaataaa ccacgcccgc gaagaacaac
      721 gacgcggtca gcgcgtagac aaacgcgatc gagatgcccg tcttcaacgc ttccttaaac
      781 cacagcttct cgcctcgttc gcgttccaac gccttgattc cgagaaagat catcgcgaag
      841 tggaggatgt tgaaaaagat cggcccgaag agcgtgtgga ccagcgattg agggttcgcg
      901 acgagcaaat gagcgacgag cacccagatg atgagcccga gcgctgtcag caagccgtac
      961 ctgatgggga ttttcatttt tactcccacg ccggccgggc cgcgccctgc gcgtcgtgcg
     1021 agtagggcgc ccagacaagc gttagtagtt tgacgttgat gttggctttc gtcggtttca
     1081 aactcagggt ttcgagttgt tcggttgttg gatcgaatga acgctcgagt gtttcgactt
     1141 cggctttgaa ctcggcttcg agatcggcga ggcgttgcga aatggcggcg acgttgtctt
     1201 cggcgcgccc gacgtcatcg gattctcgca tcgttcggct gacgccgcgc gccgtggttg
     1261 ttgcgcgtcc gagcacgccg ctgcgtttgc ggcccatgaa tgacgacagc agtgtggcgc
     1321 cgaacgagat cgcggtttga tatttttgtt ctttggcttg ttcggcttcg cgcgcgacgg
     1381 cttgttccgc gcggcgcttt cgttcttcga gttgtgcaaa cttgccggcg tatttttggc
     1441 gtaacttttc gactgcctga tcgcgttgct cgtgtgcgat ctgttgcaga cgaacgcgaa
     1501 agtcgcgttc tgactcgccg ggatttgaaa cgacgtctaa agtcggactt tccaacagct
     1561 cgaggcgctg gttgaggtag agccagctcg cgaagtcttt gcgccacgtt gcgtagcttc
     1621 tgacctttga tgctttcgca ggcacttccg tgaactgtgc attagcctcc ggttcggatt
     1681 cgagatcttc gattggtaag tcgatcgtga tcgcttcggc ccagtccaaa tcaacggggc
     1741 cgtcgccgat cagcgtgagc agtgtgagct gttcggccgt ttcgatcatt ttcgacttgc
     1801 tgtagtgaat ctcagccgcg ccgagcagca tcggacggta cgagagcttt gcgtcgtgcg
     1861 atgaacgaat gggaatgtag tactgcgtta tgtcgggaga aagctgcggg cgctgttgag
     1921 cgacgggcgc gctggttgcg acagcgggag aagggatttt aggaatcgtg accggttgcg
     1981 cttgcggagc agcgctggat tttaaaggat ccatcaacgt cttgatctgc gtgcgcgtca
     2041 acggcccgcg caggtacgac atcgcccacc gcgtctcaaa cacctccggc gcatcgtcat
     2101 gcacgttgtt cagcagaaaa atccggttcg tcaatccggc taaaatctct tccatttcct
     2161 gcttgtcaaa ctgcttacct acgcccgcag cgataccttc caatccatcc aacacgcgcg
     2221 ccttatcacg ttcggtttgc aaacgtccga tgaaccacgt gcccgtgttt gccagtcctt
     2281 tgtaatcgag gtcaaccgga ttctgcgttg cgagcacaac gccgagccca aacgcgcggc
     2341 cctgtttcaa caacgtcaac agcggcaact tcgacggcgg attcgcgacc ggggggaaat
     2401 aaccaaagat ctcgtccatg tagagaatcg cgcgcaggct cgtcgttccc gactgcgccc
     2461 gcacccaacc caacacctgg ttcagcaaca gcgacacgaa aaacattcgc tccgcatcgc
     2521 cgagatgcgc gatcgagaaa atcgaaagac gcggtttgcc actttccgtg tgaagaaact
     2581 tcggaatatc aagtgcttcg ccttccatcc agctcgcaaa actcggcgac gcgagcagat
     2641 tgttgagcgc catcgcgagt tggaagcgat cgtcggcagg aaagaacgaa tcgagatcca
     2701 tcacgccgat ctttgttatc gaaggcgatt gaactttttg aattagtgcg gcgatgtcga
     2761 gatcttttcc gttggaccac tcctggttga ggatgtttga gatcaggatg tgttcgcgac
     2821 tgcggactgg atcggctccg atgccgacga gcgcgagcag act
//
LOCUS       DASWTX010000562         2623 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_357433, whole genome shotgun sequence.
ACCESSION   DASWTX010000562 DASWTX010000000
VERSION     DASWTX010000562.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2623
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_357433"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..286)
                     /locus_tag="VGD38_08560"
     CDS             complement(<1..286)
                     /locus_tag="VGD38_08560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728104.1"
                     /translation="MSAHYFDRTTIYIFELTQNAFEANNVVGANTSRSALILAGGTPV
                     NYAELGSAFAEVMPDEIAAFMSGQVSSEQGDHRKSILRNFREVEDALDQAR"
     gene            536..2281
                     /locus_tag="VGD38_08565"
     CDS             536..2281
                     /locus_tag="VGD38_08565"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0728105.1"
                     /translation="MDDLKKFARYFRRYKLQLTIGIVCILASVVAGLFIPLIVGQAVD
                     ENWTQVTWAGLTMSAGKVLGASLISGLFLFLQRRILIGMSRNVEYDLRKDFYNHLVNQ
                     PLSFFHEHRVGDLMARATNDLSAVRQLAGPMIMYTLQTIFVVVLVLPLMFIINWWLTL
                     LLFVTMPLVSLTVKFFGQQVHTRFEKIQDFFAQITARAQENFTGVRVVRAYAQEKAEM
                     EAFNALNREYAERNLGLVRIDALMRPLMTFLIGIGFVLIIWAGVPLAVRGEITVGEFT
                     MFNMYLTRLIWPLIALGYVVNLYQRGTASLKRINAIMKVQPLIADEAEVTEQPPIKGA
                     IEFRNLTFRYTANDEPVLRDVNLKIPAGHTVAFVGRTGSGKSTIANLSPRLIEAPEGT
                     LFIDGVPIQKYPLQQLRESIGYVPQETFLFSDSVKGNIAFGVEKAEQADVEWAAEIAG
                     LSEDIAAFPEGFETLVGERGITLSGGQKQRTAIARAVLREPRILILDDALSSVDTYTE
                     EKILAQLRGVMRDRTSLIVSHRISTVRDADLICVLDEGRIVEQGTHEELLALEGEYAD
                     LYERQLLEEELAVLD"
     gene            2282..>2623
                     /locus_tag="VGD38_08570"
     CDS             2282..>2623
                     /locus_tag="VGD38_08570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728106.1"
                     /translation="MSTAVKQFHEEEAIGKTYDFQVARRLLRYLKPYIRLLIPALLLT
                     LALNLLGILQPKFTQYAIDWHILPRQLDGLNLLVALFFGSQLLRLIFSYYQAIFLNSV
                     GQYVMFDMRKEL"
BASE COUNT          553 a          670 c          784 g          616 t
ORIGIN      
        1 aacgtgcttg atcgagcgca tcctctactt ccctgaagtt ccgcaagatg gatttgcggt
       61 gatccccttg ctctgacgac acctgaccag acatgaatgc agcgatctca tctggcatta
      121 cttctgcgaa cgcgctacca agctctgcat aatttacggg tgtgccaccc gcaagaatca
      181 gagcacttcg tgaagtattg gcgcccacga cattattagc ttcaaatgcg ttttgagtta
      241 actcgaagat atatatagtt gtgcggtcga aataatgagc gctcaatggt ggcaatagcg
      301 cgcggcggct tcacgagcaa acagaagggg cggcgaacta atacaatcaa agcgcgacca
      361 gaatttcgcc gcgcatccta acatctgaac tctacgagaa acaaatcagc ttaaagttta
      421 cgcttgctta gttttaaacg ttgagcaacc acaaaagagt gcgctactct gtctgccttc
      481 aactattggc ttgatgggtg tctgatttgt ctgatctgtt aagctgtagc aacggatgga
      541 cgacttaaag aaattcgcgc gttactttcg tcgctataaa ctccaactaa ctatcggtat
      601 cgtctgcatt ttggccagcg tggtcgccgg cctgttcatt cctctcatcg ttggacaagc
      661 agtggacgaa aactggacgc aggttacctg ggcggggctg acgatgtccg ccgggaaggt
      721 tctgggcgcg agtctgatca gcggcctgtt tctgtttttg cagcgccgca tcctgatcgg
      781 gatgtcgcgt aacgtcgagt acgacctgcg caaggatttc tacaatcatc tcgttaacca
      841 accgttgtcg ttctttcacg agcatcgcgt cggcgacttg atggcgcgtg cgacgaacga
      901 tctgtcggct gtgcggcaac tcgccgggcc gatgatcatg tacacgctcc agacgatctt
      961 cgtggtcgtg ctggtgctgc cgctgatgtt catcatcaac tggtggctca cgctactgtt
     1021 gttcgtgacg atgccgctcg tgtcgctgac ggtgaagttt ttcgggcagc aggtgcacac
     1081 gcgtttcgag aagattcagg acttcttcgc gcagatcaca gcgcgcgcgc aggaaaactt
     1141 tacgggcgtg cgcgtggtgc gtgcttacgc gcaggaaaaa gcggagatgg aggcgttcaa
     1201 cgcgctgaat cgcgagtatg cggaacgcaa cctggggctg gtgcggatcg atgcgttgat
     1261 gcggccgttg atgacgtttc tgatcgggat cggatttgtg ctgatcatct gggctggtgt
     1321 gccgcttgcc gtgcgcggcg agatcacggt tggtgagttc acgatgttca atatgtacct
     1381 gacgcggttg atctggccgc tgattgcgtt gggatacgtc gtgaatctgt atcagcgcgg
     1441 caccgcgagt ttgaaacgca tcaacgcgat catgaaggtc cagccgttga tcgcggatga
     1501 ggcggaagtg accgagcagc cgccgatcaa gggcgcgatt gagtttcgca atctgacgtt
     1561 tcgctacacg gcaaacgacg agccggtgct gcgcgatgta aacctgaaga ttcccgcggg
     1621 acatacggtc gcgtttgtgg gacgcacagg aagcgggaag tcgacgatcg ccaacctgag
     1681 tccgcgtttg atcgaggcgc cggaaggcac gctgtttata gatggcgtgc cgattcagaa
     1741 gtatccgctg caacaactgc gcgagagcat tggttatgtg ccgcaggaga cgtttttgtt
     1801 cagcgacagc gtgaagggaa atatcgcgtt tggtgttgag aaagcggagc aggcggatgt
     1861 ggagtgggcc gcggagatcg cggggttgtc ggaagacatc gccgcgtttc ccgagggttt
     1921 tgaaacgctc gtcggcgagc gcggcatcac gctttccggc gggcaaaaac agcgtaccgc
     1981 gatcgcgcgg gcggtcttgc gtgagccgcg gattttgatt ctcgacgatg cgttgtcgtc
     2041 ggttgatact tacacggaag agaagatcct ggcgcagctt cgcggtgtga tgcgcgatcg
     2101 cacgagcctg atcgtgtcgc atcgcatttc gaccgtgcgc gacgcggatc tgatctgtgt
     2161 gttggacgag ggccggatcg tcgagcaggg aactcacgaa gaactgctcg cgttggaagg
     2221 tgaatacgcc gatctgtatg aacggcaact actcgaggaa gaactggcag ttttggatta
     2281 aatgtcaacg gcagtaaaac agtttcacga agaagaggcg atcgggaaga cttacgattt
     2341 tcaggtcgcg cggcggctgc tccggtatct caagccgtac atccgcctgc tcatccccgc
     2401 gctcttgctc acgctcgcgc tcaacctgct cggcatactg cagccgaagt tcacgcaata
     2461 tgcgatcgac tggcacatcc tgccgcgcca gctcgacggt ctcaatctgc tcgtcgcttt
     2521 gttcttcggt tcgcaactgc tgcggctcat cttctcttac taccaggcga tctttctcaa
     2581 cagcgtcgga cagtacgtga tgttcgacat gcggaaagag ctt
//
LOCUS       DASWTX010000563         5526 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_94281, whole genome shotgun sequence.
ACCESSION   DASWTX010000563 DASWTX010000000
VERSION     DASWTX010000563.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5526
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94281"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..440
                     /locus_tag="VGD38_08575"
     CDS             <1..440
                     /locus_tag="VGD38_08575"
                     /inference="COORDINATES: protein motif:HMM:NF014907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728107.1"
                     /translation="SGTENQYVLHQEMGKWMTDNVTVVRYNEKLKATDNKLLELMDRY
                     KRISINDSNLWATMALPHARHLANMLELARVITLGALNRNESRGAHYKPEFPDRDDEN
                     FLKTTIAEYSGEGPVFSYDPVDISLIAPRKRDYSKGKKETAKV"
     gene            446..1198
                     /gene="sdhB"
                     /locus_tag="VGD38_08580"
     CDS             446..1198
                     /gene="sdhB"
                     /locus_tag="VGD38_08580"
                     /inference="COORDINATES: protein motif:HMM:NF006391.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HEY0728108.1"
                     /translation="MSTPQKTVEIHIRRRKNPDSPQYWEQFEIPWRPNLNIISCLMEI
                     QKNPVNKAGEATTPPVWHMNCLEQVCGICTMIINGRARQSCSALVDKLDQPIKLEPMS
                     KFPNVRDLIVDRSRMFDHLRRVHAWIELDGTYDLGPGPRMDQDEVMERYAYSRCMTCG
                     CCLEACPQYEDDQYIGPQAIAQVRLFNMHPSGKMNRDERLEGIMGEDGITNCGNAQNC
                     VKACPMNIPLTRAIYEENRETVLHGLFGWLKG"
     gene            complement(1195..2127)
                     /gene="mdh"
                     /locus_tag="VGD38_08585"
     CDS             complement(1195..2127)
                     /gene="mdh"
                     /locus_tag="VGD38_08585"
                     /EC_number="1.1.1.37"
                     /inference="COORDINATES: protein motif:HMM:TIGR01763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEY0728109.1"
                     /translation="MGARKKITVVGAGNVGATAAHWLAAKELGDVVLVDIIEGVPQGK
                     ALDLAQAAPIESFDVRMIGANTYDQTDNSDVVIITAGLARKPGMSRDDLLKTNADIVG
                     KVVDECVRRSPNSILIIVSNPLDAMCQVALKRSGFPKHRVIGMAGVLDSARMRCFLAE
                     ALDVSVENVTAFVLGGHGDTMVPLPRFSTCAGIPITELLPKDQIDAIVKRTAGGGAEI
                     VSLLKTGSAYYAPSAAAVEMTESILKDKKKILPCAAYLEGEYGINGLYVGVPCKLGAR
                     GLEQVIEINLTAEERIALHKSASAVQELIDVLGI"
     gene            2224..2514
                     /locus_tag="VGD38_08590"
     CDS             2224..2514
                     /locus_tag="VGD38_08590"
                     /inference="COORDINATES: protein motif:HMM:NF013844.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Smr/MutS family protein"
                     /protein_id="HEY0728110.1"
                     /translation="MDEENPFPEPVEIEITDVFDLHTIPPRDVKRVVEEYLEIAREKG
                     FPVVRIIHGKGIGVQREMVRSILARTDFVLDWTDAPPEAGGLGATIVRLKGV"
     gene            2526..2876
                     /locus_tag="VGD38_08595"
     CDS             2526..2876
                     /locus_tag="VGD38_08595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728111.1"
                     /translation="MLILLAILIFIYNFTAVFYFLCRIEPLPTVEFLYVATFPCGVVW
                     WLRAEQRKTPVKDLYCEGLLAGYGWAFIIPYQLLTTRGVKGLLPIVALLASYFGSMVL
                     AAVFYFLFVADFST"
     gene            complement(2873..3382)
                     /locus_tag="VGD38_08600"
     CDS             complement(2873..3382)
                     /locus_tag="VGD38_08600"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEY0728112.1"
                     /translation="MRNTTLSLFAFLLILTVISLARAQDAKPAEQKSETPAATDSEKR
                     KNEVEKLIADASKRGDKVIARCIDPAGCGMESSDQVLNLEAGRAVSLPKPAYPALARA
                     AHVQGSVEVQVIIDEEGKVIAAAAISGHPLLQATCVKAARESLFTTTKLEGVPVKVTG
                     MLRYNFITH"
     gene            3550..4035
                     /locus_tag="VGD38_08605"
     CDS             3550..4035
                     /locus_tag="VGD38_08605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728113.1"
                     /translation="MLKIIFPFLIIALTFSTSFAQKETATGVETDKDIELLRRDLRAE
                     KKKLIALNVPLTAGEATKFWPVYDQYIADITKVYDEFYKVVKEYAAVQKTITDEQASS
                     LMRRWAELMVQVHQTRQRYIPIVERTIPARKAAHFFQIERRLYALLELQVVSQTPLIL
                     Q"
     gene            5314..>5526
                     /locus_tag="VGD38_08610"
     CDS             5314..>5526
                     /locus_tag="VGD38_08610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728114.1"
                     /translation="MDLDKFSLEHAAWWIARARQENRLLPQIIVVAPQRELSLNELKF
                     ISEEIAPVAVFIEDRPAAAFNDVLRSV"
BASE COUNT         1242 a         1486 c         1548 g         1250 t
ORIGIN      
        1 agagcggtac cgagaaccag tacgtcctcc accaggagat gggcaagtgg atgactgaca
       61 acgtcaccgt cgtgcgttac aacgagaagc tcaaggcgac tgacaacaag ctgctcgagc
      121 tgatggatcg ttacaaacgc atctcgatca acgactcgaa tctttgggcc acgatggcgt
      181 tgccgcacgc gcgtcatctc gcgaacatgc tcgaactcgc gcgcgtgatc acgctcggcg
      241 cgttgaaccg gaatgaatca cgtggcgcgc actacaaacc cgagtttccc gatcgcgacg
      301 acgagaactt tttgaagacc acgatcgcgg agtattcagg cgaaggcccg gtcttctcgt
      361 acgacccggt tgacatctcg ttgatcgcac cgcgcaaacg cgactacagc aaaggcaaga
      421 aagaaacagc aaaggtctaa tttcagtgtc aactccacag aaaacagtcg agatccacat
      481 ccgccggcgc aagaacccgg attcgccgca gtactgggaa cagtttgaga ttccctggcg
      541 cccgaatctc aacatcatct cctgcctgat ggagattcag aagaacccgg tgaacaaagc
      601 gggcgaagcg acgacgccgc ccgtttggca catgaactgt ctggaacagg tgtgcggcat
      661 ctgcacgatg atcatcaacg gccgcgcgcg gcagtcgtgc tcggcgctgg tcgacaaact
      721 cgatcaaccg atcaagctcg aaccgatgtc gaagtttccg aacgtgcgcg acctgatcgt
      781 ggatcgttcg cggatgttcg atcacttgcg gcgcgtgcat gcgtggatcg agctggacgg
      841 cacgtacgat ctcgggccgg gtccgcgtat ggaccaggac gaggtgatgg agcgttatgc
      901 ttactcacgc tgcatgactt gtggttgttg tctggaagcg tgcccgcagt atgaagacga
      961 tcagtacatc ggcccgcagg cgatcgcgca ggtacgtctc ttcaacatgc atccgtcggg
     1021 aaagatgaac cgcgacgaac ggctggaagg cattatggga gaggacggca tcacaaactg
     1081 cggcaacgcg cagaactgcg tgaaagcttg tccgatgaat attccgctga cgcgagcgat
     1141 ctacgaagag aaccgagaga ccgtgttgca cggcctcttc ggttggttga aaggctagat
     1201 tcctaaaacg tcgatcaatt cctgcactgc cgacgcgctc ttgtgaagtg caatcctctc
     1261 ttcggcagtc aggttgatct cgatcacctg ctccaatccg cgcgcaccga gtttgcacgg
     1321 cacgccgacg taaagtccgt tgatgccata ctcgccttcg agatacgccg cgcacggaag
     1381 aatcttcttc ttgtccttca ggatcgattc cgtcatctcg accgcggccg ccgacggcgc
     1441 gtagtaagca gaacccgtct tcaacaagct cacgatctcg gcgccgccgc ctgcagtgcg
     1501 cttgacgatc gcgtcgatct gatccttcgg cagcagttcg gtgattggaa taccggcgca
     1561 ggttgaaaag cgcggcaatg ggaccatcgt gtcgccgtgt ccgccgagta cgaatgcagt
     1621 cacgttttcc acagaaacgt ccagcgcttc ggcgaggaag caacgcatgc gcgcggagtc
     1681 gagcactccg gccatgccga tcacgcggtg cttcggaaag cccgagcgct tgagtgcaac
     1741 ctggcacatc gcatcgagcg ggttggagac gatgatcaga atcgagttcg gcgagcgccg
     1801 gacgcattcg tccacgacct tgccgacgat atccgcgttg gtcttgagca gatcgtcgcg
     1861 gctcatgccg ggtttgcgtg ccaaaccggc ggtgatgatc acgacgtcgg agttgtcggt
     1921 ttgatcgtag gtgttggcgc caatcatgcg cacgtcaaaa ctttcgatcg gcgcggcctg
     1981 ggccaggtct aaagccttgc cttgcggcac gccttcgatg atgtcgacga gcaccacgtc
     2041 gccgagttcc ttagcggcga gccagtgtgc cgcggttgcg ccgacgtttc ccgcgccgac
     2101 aacggtgatc ttttttcgcg cacccataca gataatttcc ttcgattaag atgttaggat
     2161 ttgaaagaga gcgagtctac aagtgggccc gagaggtgtc aaacagcgag gtgacaaacg
     2221 cgtatggacg aggaaaatcc ctttcccgag ccggttgaaa tagagatcac ggacgttttc
     2281 gatctgcaca cgattccgcc gcgcgacgtg aagcgcgtcg tcgaggagta tttagagatc
     2341 gcgcgtgaga agggttttcc ggtggtgcgg atcattcacg gcaaagggat cggggtccaa
     2401 cgcgagatgg tccggtcgat cctggcccga acggatttcg tcctcgattg gaccgacgcg
     2461 ccaccggaag ctggtggatt aggtgcaact attgtgcgct taaagggtgt ataatcccgt
     2521 cgcccatgct tatcctgtta gccatcctca tctttatcta caacttcacg gcggtgtttt
     2581 acttcctctg ccgcatcgag cctttaccga cagtggagtt tctttacgtt gcgacgtttc
     2641 cctgcggggt cgtttggtgg ttgagagctg agcaacgaaa gacgccggtt aaggatctct
     2701 attgcgaggg tctgctggcg ggttacggtt gggccttcat catcccgtat caactgctga
     2761 cgacacgtgg agtgaaaggc ttgctgccga tagtcgcgtt gctcgcgagc tatttcggct
     2821 cgatggtcct ggcggctgtt ttttacttcc tgtttgtcgc cgacttcagc acttagtgag
     2881 tgatgaagtt gtatcgcagc atgccggtga cctttaccgg aactccctcc agttttgttg
     2941 tcgtgaacaa tgattctcgc gctgccttta cgcaagtggc ctggagcagt ggatgcccgc
     3001 tgatggcagc ggctgcaatt acttttcctt cttcgtcgat gattacctgg acctcgaccg
     3061 agccttgaac gtgagctgct cgcgcgagtg ccgggtaagc gggtttgggc aggctgaccg
     3121 cgcgtccagc ctccaggttg agtacctgat cgctcgactc cataccacaa ccggcaggat
     3181 caatacatct tgctataacc ttgtcgccgc gtttgctagc gtccgcgatc aacttctcaa
     3241 cttcattctt ccgcttctcg ctgtctgtcg cggcgggtgt ctcagacttt tgctcggcag
     3301 gcttcgcgtc ctgcgcacgt gctaatgaga ttacggtgag aatcaagagg aacgcgaaca
     3361 gagagagtgt agtgttgcgc atttgtttac tcctgtcagc ttgctgcgag gtacttactt
     3421 acgccaagta ttaccgcaga taaactttca tggcaacctc ctgtcaattt ttacagttac
     3481 ccgcggccca ggctctcaat atatttcgca cgttcccggt tttggcacca tcccgttaaa
     3541 ggagatctga tgttgaagat aatctttccg tttttgatca ttgctttgac cttcagcacc
     3601 tcgtttgcgc aaaaagagac agcaacggga gtcgagactg ataaagacat cgaactgctt
     3661 cgccgcgatc tgcgagcaga aaagaagaag ttaatagcat tgaacgtgcc gttaaccgcg
     3721 ggagaggcta cgaagttttg gcctgtgtac gaccaataca tcgctgacat cactaaagtt
     3781 tacgacgagt tttacaaggt agtgaaagag tatgcggcgg ttcagaaaac aattactgac
     3841 gagcaagcga gcagcttgat gaggcgttgg gccgagttga tggtccaggt gcatcagaca
     3901 cgtcagcgat acattccaat tgtggagaga actattccgg cgaggaaagc ggctcacttc
     3961 ttccagatcg agcggcggct ttatgcgttg ctcgagctgc aggtcgtgtc gcaaacgccg
     4021 ctgatactac agtagccgtc ggctagcgag ctgaacgtga tctcgggtgc ggctctcgtt
     4081 cgcgagtttg tggtccagta acactcccgg gtcaaacatc aatgtggggt ttgctgcgac
     4141 gtcgatcgtc gctggttttg ttttcttgac taccgctggt ggggagcaag tcagccacca
     4201 actccagcga caacccacag cgcgaacaga agcgcatctc gatgaccaca ttgaggacag
     4261 aacatttaag ctccgaatga aactagatta cgacagcaga gtacggaatc ttgctgatgt
     4321 ccgtttccaa agtgctacta cgcggatcat gtcagccaag aagctgctcg gttccagcgt
     4381 cgacgtgtac agcaaacagt gagcaggtgg accacctcgc cggagcaggt tgacaaaaca
     4441 ccacaagtat taacatgaat tttttatttg ccagactggt caagtaggta tagagtagcc
     4501 cccgaatttg gctgtttctt cgaggaattc gggcacaaac ccggtcacca cgaggtcaaa
     4561 aggaagtagt ccccggtcag aaagaccgtt gccatcccgc ggacgacggt gttaggttcc
     4621 actacaggga ccgtactact tctgcttgcc cgcccgacaa ctcctccttg accgtttgac
     4681 aataacgttg catatgaacg aaatttgcca ctcttctcaa cacgaggtaa cagacaagag
     4741 acagatactc aacttttatt cggcaccctg acaacgatcc cacagtgtta acgacgtccc
     4801 ccaatttccc gtacaaacgc gaagccgatc tttatgcatc tgagatctac ccagacggct
     4861 tatgtgagtc gttcgacgcc ggtgcccgcc aagctttccc cagcaaactt ggtatcgtgg
     4921 ttgcttcgta tagaggagaa gcagtagtcg tggcgtcagt tgattggagg tatgatgggg
     4981 gctaagtccg cagagcgaag agtcgaggat tcgttcaatc caaacgatga gaggcacatg
     5041 gatccgagtg tccgtgaact ccaacatatt agtcgaaaga ttggacggtt cgccgccttt
     5101 gtgcaagcgt atatcgtgga cgcagtcgaa cgtgtagaac gtgtatttgg tctgtcttca
     5161 gtggagcagc gagttggacc aagagcttca tctgtatcag caacgcgacc aacagcaacc
     5221 ccggcgtaca cggtcgggga gatctccgtc gcagaaatta cccctgacag ctccacgatt
     5281 ttttccgata ggtatcgctc aatagtgtac tgtttggatc tggacaaatt cagtcttgag
     5341 catgccgcgt ggtggatcgc gcgggctcgg caagaaaacc ggctgctgcc gcagatcata
     5401 gttgtagcgc cgcagcgtga gctgtccctc aacgaactca agttcatctc cgaggagatc
     5461 gcgccggtag cggtgttcat agaagatcga ccggccgctg ctttcaatga tgtcctccgg
     5521 tcggtg
//
LOCUS       DASWTX010000564         2150 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_6446, whole genome shotgun sequence.
ACCESSION   DASWTX010000564 DASWTX010000000
VERSION     DASWTX010000564.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2150
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6446"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2150)
                     /locus_tag="VGD38_08615"
     CDS             complement(<1..>2150)
                     /locus_tag="VGD38_08615"
                     /inference="COORDINATES: protein motif:HMM:NF024893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AsmA-like C-terminal region-containing protein"
                     /protein_id="HEY0728115.1"
                     /translation="SLQIAGQVMGTGTDFRWVGELRAAAERSYGTTLTGLILRDARAE
                     KSGGVLTASAGQFTANGLSASGAKVAGITASDLRVRNEGDTTTANVASVKAGTISASG
                     ATVKGVTANDISVQDRGGVTNVEVKNVQVGATSAAGAEIGSLNIAGVRLSVRNRQIQG
                     QTADIDAGTVKVADGQVENVKLTKPVFVVAPSGSYRATADLSIGGGVLGRMNMGQARA
                     TVVATNREIALNNFTADVFDGRASGNARIAIARGGTSQITANIDNVDIAGPLTALAGS
                     AVPLTGRATGRVDLTFPGTDVKLASGSVTTQLTADTSQVSADRIPITGTVALRADRGL
                     FDIQQLNLQTPQTRLTASGRFSYENDSNLQVDLNSSDAAELQAVLISSGLLPEVEEQM
                     RSYGIGLAGQLTFNGNIRGRLSSPDVNGKLALGSLIVNGIEFGALSASIAMNEQEVRV
                     ADGQLAERDGGGVRFSLVAPRGGENNTSLEATLDRFSARTLLALSPLSNNKQLTSDTE
                     GDLSGTINISGIPNAMNGSANLTLGPGRLGGEPVEGMTARATFNGPNVNIESVDLRLA
                     AGHIVASGNLNTTSRAFDFQGRAENIQLARLTALANRPGLAVTGTANLTARVSGSLSD
                     EDFSAYQITFDGEGRDVTINGRPAGTVALTGRTQNQQLSINFTTGMLGQPQVVAAQIN
                     LASPSLPATIETTLTNADLTNLFQILLPNTGVRV"
BASE COUNT          373 a          698 c          649 g          430 t
ORIGIN      
        1 caacacgcac gcccgtgttt ggcagcagga tctgaaacag gtttgtcaga tccgcgttcg
       61 tgagcgttgt ttcgatcgtc gcaggcagcg atggactcgc cagattgatc tgcgccgcga
      121 cgacctgcgg ctggcccaac atgccggtcg tgaagttaat gcttagctgc tggttctgcg
      181 tgcggccggt gagtgccacc gtgcccgcgg gacggccgtt aatcgtgacg tcacgtccct
      241 cgccgtcgaa cgtgatctga tacgcggaga aatcttcgtc agacagactg cccgaaacac
      301 gcgccgtaag gttcgcagtg ccggtgaccg caagccccgg cctgttcgcg agcgccgtca
      361 gacgcgcgag ttgaatgttt tcggcgcggc cctggaagtc aaaggccctg ctcgtcgtgt
      421 tgagattgcc gctcgcgacg atgtgaccgg cggcgaggcg caaatcgacg ctctcgatgt
      481 ttacgtttgg accattgaac gtcgcccgcg ccgtcatgcc ttcaaccggc tcgccaccga
      541 ggcggcctgg tccaagcgtg agattggcgc tgccgttcat cgcgttcgga atgccggaga
      601 tgtttatcgt gccggaaaga tcgccttcgg tgtcgctcgt gagctgtttg ttgttgctca
      661 acggcgacag cgcgagcaac gtgcgcgcgc tgaagcgatc gagtgtggct tccagcgaag
      721 tgttgttctc gccgccgcgc ggcgcgacga gggagaaccg cacaccgccg ccgtctcttt
      781 ccgccaactg cccgtcggcg acacgcactt cctgctcgtt catcgcgatt gacgccgaaa
      841 gcgcgccaaa ttcgatgcca ttaacaatca acgagccgag cgcgagcttg ccgttcacgt
      901 caggcgaact gagccgcccg cgaatgtttc cgttaaaagt gagttggccc gcgagaccga
      961 tgccgtagct gcgcatctgc tcctcgactt ccggcaacaa gcccgaagag atgagcaccg
     1021 cctgcaactc cgccgcatcg ctggaattta gatcgacttg caggttcgag tcgttttcgt
     1081 aggagaaccg gccgcttgcg gtcaaacgcg tctgcggtgt ttgcaggttc aattgctgaa
     1141 tatcgaacag gccgcgatcg gcacgcagcg cgactgtgcc cgtgatcgga atcctgtcgg
     1201 cgcttacctg gctcgtgtcg gctgttagtt gtgtggtgac agaaccggaa gcgagtttga
     1261 cgtccgtgcc gggaaacgtg agatccaccc ggcctgtcgc gcggccggtc aacggaacag
     1321 cgctgccggc gagtgcggtc agtggaccag cgatgtcgac gttgtcgatg tttgccgtga
     1381 tctgcgacgt accgccgcgt gcgatcgcga tgcgggcgtt gccacttgcg cgtccatcga
     1441 acacgtcggc ggtgaagttg ttgagggcaa tctcgcgatt ggtggcgacg acggtcgcgc
     1501 gcgcctggcc catgttcatc cggccaagaa cgccgccgcc gatgctcagg tccgccgtcg
     1561 cgcgatagct gccgctcggc gccacgacga acaccggctt cgtgagcttc acgttttcaa
     1621 cctggccatc ggcgaccttc acggtaccag cgtcgatgtc cgcggtctga ccctgaatct
     1681 ggcgattgcg aaccgacaat cgcacgcccg cgatgtttag actgccgatc tccgcgcccg
     1741 ccgcgctcgt cgcgccgacc tgaacgttct tgacttcaac gttcgtcacg ccgccgcgat
     1801 cctggaccga gatgtcgttc gccgtgacgc cttttaccgt ggcgccggaa gccgagatcg
     1861 ttcccgcctt cacactcgcc acgtttgcag tcgtagtatc gccctcgttt cgcacgcgca
     1921 aatccgacgc ggtaattccc gcgaccttcg cgcccgaagc actcaagcca ttcgccgtga
     1981 actgtccagc cgacgcggtc aacacgccgc cactcttctc cgcgcgcgca tcgcgcagaa
     2041 tcagtcccgt caacgtcgtg ccgtaacttc gttccgcagc cgcacgcagt tcgccgaccc
     2101 agcgaaagtc agtgcccgtg cccatcacct gaccggcaat ctgcaacgaa
//
LOCUS       DASWTX010000565         2760 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_335133, whole genome shotgun sequence.
ACCESSION   DASWTX010000565 DASWTX010000000
VERSION     DASWTX010000565.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2760)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2760)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2760
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335133"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..636)
                     /locus_tag="VGD38_08620"
     CDS             complement(<1..636)
                     /locus_tag="VGD38_08620"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0728116.1"
                     /translation="MISLHQVSKKYETPAGVFAALRDVDVEIRAGEFVGVVGKSGSGK
                     STLLNMIAGIDRPSSGTVTVAGTTIHTLPENKLAAWRGRNVGFVFQFFQLLPTLTAVE
                     NVMLPMDFCKTFPARERRKRAEELLARVGVGPQADKLPATLSGGEQQRVAIARSLANE
                     PPLVIADEPTGNLDSMTAHGILDLFRNLANFGTTVVIATHEPGIVRVSDRKI"
     gene            722..1312
                     /locus_tag="VGD38_08625"
     CDS             722..1312
                     /locus_tag="VGD38_08625"
                     /inference="COORDINATES: protein motif:HMM:NF025636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEY0728117.1"
                     /translation="MSENDRLHLAELKKRTDARVRRTRDALGDALVALMQEKPFDTIT
                     VQDVLDRATVGRSTFYSHYSDKDDLLMSDAEEFFESVAMMLSVRGDTSDRVFPVREFF
                     GHIIEAKKFVDALASAGKFNDNMELARGLFARGIERRLAELPKGQGIPEHERPAIAFA
                     HAGALLALLTWWVDRGMKQPPAEMDDLFHRLVWKGV"
     gene            complement(1280..1771)
                     /locus_tag="VGD38_08630"
     CDS             complement(1280..1771)
                     /locus_tag="VGD38_08630"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY0728118.1"
                     /translation="MHALETERLLLRPFTTGDAPFILTLLNEPSFLRFIGDKKVRTLE
                     DAQQYLLNGPIASYNRYGFGLLLVELKESQIPIGMCGLLKREELSDPDIGFAFLPDYW
                     NKGFGFEAATAVLKDGQLDRTLAIVSPDNDASIKLLEKLGFGFERVKGDVKLYALPNQ
                     PVE"
     gene            1784..>2760
                     /locus_tag="VGD38_08635"
     CDS             1784..>2760
                     /locus_tag="VGD38_08635"
                     /inference="COORDINATES: protein motif:HMM:NF037667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HEY0728119.1"
                     /translation="MSEKIFLCLAVILCASVELRADVLHYTATLEPDIANKSIKGSVL
                     IRVRTASNVVELNCGDLVIDSVRLEGTELPFSVVDRRLKVSLPSGKPERDLEVRFHGA
                     PRYGIRFFPDRQQVYTVFSTSQWMVCVDDPADRATLTMKLILPATLTAVANGELVSQR
                     DLPDNKRVSEWRQKNPIPTYIFGFAVGPFRIVKQRHRNVELQYFVTNYSDAEARRIFR
                     DTPGMLDFFEDRAGVKYADKTYTQVLAAGGVEQEMSSFTALKESYGKQLLDNEQDLWL
                     AAHEFAHQWWGNMVTCRDWNHFWLNEGVANFVTAAYLEHRFGRAAYMRE"
BASE COUNT          586 a          734 c          839 g          601 t
ORIGIN      
        1 gatcttgcga tcgctcacgc gcacgatgcc gggttcgtgc gtggcgataa caaccgtggt
       61 gccgaagttg gcgagattgc gaaagagatc gagtatgccg tgcgccgtca tcgaatcgag
      121 gttacccgtc ggttcgtctg caataaccag cggcggctca ttggcgagcg aacgtgcaat
      181 cgccacgcgc tgttgttcgc cgccggagag tgtcgccggc aatttgtccg cctgtggacc
      241 cacgccgacg cgcgcgagca actcttccgc gcgtttgcgg cgctcgcgcg cggggaacgt
      301 tttgcaaaaa tccatcggca gcattacgtt ctcaacggcc gtgagcgtcg gcagcaattg
      361 aaagaactga aacacgaatc cgacgttgcg cccgcgccac gcagcgagtt tgttttccgg
      421 caacgtgtga atcgtcgtgc cagcgacagt gactgtgcct gacgaaggac gatcgatgcc
      481 ggcgatcatg ttcagcagcg tggattttcc gctgcccgat ttgccgacga cgccgacgaa
      541 ctcgcccgcg cgaatctcga cgtcgacgtc gcgcagcgcg gcaaacacgc ccgcgggcgt
      601 ttcgtatttt ttgctcactt ggtgtagaga gatcataggg tgcgctactc tatgagcgcc
      661 cggtcatcgt gtccagcgca aggcgcgcga aatcaggcat aaccgaacaa agaggtagct
      721 aatgtccgag aacgaccgtt tgcatcttgc cgagttgaag aaaagaaccg atgctcgcgt
      781 gcggcgaacg cgcgacgcgc tcggcgatgc cctcgtcgcg ttgatgcagg aaaaaccgtt
      841 cgacacgatc acggtgcagg acgttttgga ccgcgcgacg gtcgggcgtt cgactttcta
      901 ttcgcactac agcgacaagg acgatttgtt gatgagcgac gcggaagagt tttttgaatc
      961 cgtggcgatg atgctgtcgg tgcgtggcga cacgtcggac cgcgtgtttc cggtgcgtga
     1021 gtttttcggt cacatcatcg aggcgaagaa gtttgtagat gccttggcgt cggcggggaa
     1081 attcaacgac aacatggagc tggcgcgcgg gctgtttgcg cgtggcatcg agcggcgttt
     1141 ggcggagctg ccgaagggcc agggaattcc ggagcacgaa agaccggcga ttgcgttcgc
     1201 gcacgcggga gcgttgctgg ccttgttgac gtggtgggtc gatcgcggca tgaagcagcc
     1261 gccggcggag atggacgacc tattccaccg gctggtttgg aagggcgtat aacttaacgt
     1321 cgcctttcac gcgttcgaat ccgaagccga gcttttcgag caacttgatc gaggcatcgt
     1381 tgtcggggct gacgatcgcg agtgtgcgat cgagttgccc atccttcaac accgcggttg
     1441 cggcttcgaa gccgaatccc ttgttccagt agtcaggcag gaaagcgaag ccgatgtcgg
     1501 ggtcggaaag ttcttcgcgc ttgagcaaac cgcacatgcc gatgggaatt tgtgattctt
     1561 tgagctcgac gagcagcaga ccaaaaccat accggttgta gctggcgatt ggtccattca
     1621 gaagatattg ttgtgcgtct tcgagcgtgc ggactttctt gtcgccgatg aaacggagga
     1681 acgaaggttc gttgagcagc gtgagaatga acggcgcgtc gccggtcgtg aatgggcgca
     1741 acagtaatcg ttcggtttcg agggcatgca tagaatgctg agtatgtcag aaaagatatt
     1801 tctgtgtctc gcggttatct tgtgcgcgag tgttgagttg cgtgcggatg tgctgcatta
     1861 cacggccaca ctcgaacccg acatcgcaaa caaatccatc aagggttctg tattaatccg
     1921 tgttcgaacg gcttcgaacg tggtcgagct taactgcggt gacttggtga ttgactcggt
     1981 ccgacttgaa ggcaccgaac ttcctttctc agtagtcgac cgccggttga aagtgtcttt
     2041 accgtcagga aaaccggaga gggatttaga agtcagattt catggtgcgc cacgatatgg
     2101 aattcggttt tttccggatc ggcaacaggt ttataccgtg ttctcgacta gtcaatggat
     2161 ggtctgtgtt gatgaccccg cggacagagc aacgctcacg atgaaactga tcctgcccgc
     2221 gacattaacc gcggtcgcga atggtgaatt ggtttctcaa cgcgatctgc cagacaacaa
     2281 acgcgtctcg gaatggcgcc agaaaaatcc catcccgacg tacatcttcg gtttcgccgt
     2341 tggtccattt cggatcgtca aacaacggca tcgaaacgtc gaacttcaat acttcgtcac
     2401 caactactcc gacgccgaag cgcgccgcat ttttcgcgac acgcccggca tgctcgactt
     2461 cttcgaagat cgcgccggtg ttaagtacgc cgataaaacc tacacgcagg tactcgccgc
     2521 gggcggcgtc gaacaggaga tgagcagctt cacagcgctc aaagagtcgt acggaaaaca
     2581 gttgctggat aacgagcagg acctttggct cgccgcacac gagtttgcgc accagtggtg
     2641 gggaaacatg gtaacgtgcc gcgactggaa ccacttttgg ctcaacgaag gcgtcgctaa
     2701 tttcgtgacc gccgcctatc tcgaacatcg cttcggccgc gcggcttaca tgcgcgagat
//
LOCUS       DASWTX010000566         1822 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_378542, whole genome shotgun sequence.
ACCESSION   DASWTX010000566 DASWTX010000000
VERSION     DASWTX010000566.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1822
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_378542"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..453)
                     /locus_tag="VGD38_08640"
     CDS             complement(<1..453)
                     /locus_tag="VGD38_08640"
                     /inference="COORDINATES: protein motif:HMM:NF024968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0728120.1"
                     /translation="MRVLHVIPSVSERSGGPAAAIVPMCRALQSQGIEVFLITTSHGL
                     TQIRTDGDEKYKGVPARFFPVQAGASFKYSRPLTSWLKTNVSEFDVVHIHAVFNHASV
                     AAARECRRAGVPYVVRPLGTLDPWSMKQKAGRKRIFWSLVGKRMLLGSA"
     gene            complement(454..>1822)
                     /locus_tag="VGD38_08645"
     CDS             complement(454..>1822)
                     /locus_tag="VGD38_08645"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HEY0728121.1"
                     /translation="SKNLLLFASELRALIATGLVPRKLSRAGLDSYLANGSVAAPLTI
                     VEGVRQLQPGHYLKVRSNLETTITKFAEEHSPTSTRPQTRAEAVAQLRAELEESVRMH
                     LVSDVPLGVFLSGGMDSSTLVALMSKVSDQRPKTFSVVFEETDLSEENYSRLVAQRFQ
                     TDHCEIRLREAQLLEMLPDAIGALDQPTMDGINTFVVSKAVKNAGVTVALSGLGGDEL
                     FAGYPSFRRALKLASLPNASKQVLRAAAGVGRHVLNGSVQQQKLWALAGSDGSPEEVY
                     RITRQLFANGSSTTPNGNGDVVNKISQLELEGYMANTLLRDTDVMSMAHSLEVRVPFV
                     DARVVDYALSLPGEWKLDQHQNGVPKPLLADALADLLPRDFLARKKMGFTLPFEKWMQ
                     GRMRAEISSVFGNERQLSEAGLIGNDVRDLWARFLRAPRAVGWTRPWSLFVLARWCRI
                     NRVTV"
BASE COUNT          398 a          615 c          454 g          355 t
ORIGIN      
        1 cgctgaaccc aacagcatcc gctttccaac cagcgaccag aaaatcctct tccgcccagc
       61 cttctgtttc atgctccacg gatccagcgt ccccagcggc cgcacaacgt acggcacacc
      121 cgcccttcta cattctctgg ccgctgcaac agacgcatga ttgaacacgg cgtgaatatg
      181 aaccacgtcg aattcactga cattcgtctt caaccaactc gtcaatggcc gcgaatactt
      241 gaacgacgca ccggcctgca ccggaaagaa tcgtgcgggc acacctttat atttctcatc
      301 cccgtccgtg cgaatctgtg ttagtccgtg gcttgttgtg atcagaaaga cttctattcc
      361 ctgactttgt agcgcccggc acatcggaac gatcgccgcc gccggtccac ccgagcgctc
      421 cgacaccgac gggatcacat gcagcactct catctacacc gtcacccgat taatccgaca
      481 ccaccgcgcc aacacaaaca gcgaccacgg gcgcgtccaa ccgaccgcac gcggcgctcg
      541 caagaaccga gcccacaagt cgcgcacgtc attaccgatc agccccgctt cggaaagctg
      601 acgctcattc ccaaacacgc tcgaaatctc cgcacgcatc cttccctgca tccacttctc
      661 aaacggcaac gtgaatccca tcttcttccg tgcgagaaaa tcacgcggca acagatccgc
      721 aagcgcgtct gccagcaacg gcttcggcac tccgttctgg tgctggtcca acttccactc
      781 gccgggcaac gacaacgcgt aatcgacaac cctcgcatcc acaaacggca cgcgcacttc
      841 aagcgaatgc gccatgctca tcacgtccgt gtcgcgcaac aacgtgttcg ccatgtagcc
      901 ttccaactcg agctgcgaaa tcttgttcac cacgtcgccg ttgccgttcg gcgtcgtcga
      961 tgaaccgttg gcgaagagct gacgggtgat gcgataaacc tcttcgggcg atccatcgct
     1021 ccccgcgagc gcccacaatt tctgttgctg caccgaacca ttcaacacgt gacgcccaac
     1081 acccgcagcc gcgcgcaaca cctgcttcga cgcattcgga agcgacgcga gtttcaacgc
     1141 gcggcgaaaa ctcggatacc cggcgaaaag ctcgtcgcca cccagaccgg acagcgcgac
     1201 cgtcacacct gcattcttca ccgctttcga aacgacaaac gtgttgatgc cgtccattgt
     1261 cggttggtcc aacgcgccga tcgcgtccgg caacatctcg agcaactgcg cttcacgcaa
     1321 gcggatctca caatggtcgg tctggaatcg ttgcgccacg aggcgggagt agttttcctc
     1381 gctgagatcc gtttcttcga aaacgacgct gaacgtcttg ggccgttgat cgctaacctt
     1441 gctcatcaac gcgacgagcg tgctcgaatc catgccgccg gaaagaaaca cgccgagcgg
     1501 cacgtcgctg acgagatgca ttcgcaccga ctcttcaagc tctgcgcgca attgcgcgac
     1561 ggcttcagct cgagtttgcg ggcgcgtaga tgttgggctg tgttcctccg cgaatttcgt
     1621 gatcgtcgtt tccaggttac tgcgcacttt caagtaatgg ccgggctgca actgtcgcac
     1681 gccttcgacg atcgtgagcg gtgcggcaac ggagccattt gcgagatacg aatcgagacc
     1741 ggcgcggctg agtttccgtg ggaccagtcc ggttgcaatc agagcgcgca gttccgaggc
     1801 aaacaggagg agatttttgg aa
//
LOCUS       DASWTX010000567         5372 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_136521, whole genome shotgun sequence.
ACCESSION   DASWTX010000567 DASWTX010000000
VERSION     DASWTX010000567.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5372
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136521"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..864)
                     /locus_tag="VGD38_08650"
     CDS             complement(<1..864)
                     /locus_tag="VGD38_08650"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY0728122.1"
                     /translation="MKRLSISVLCLFLLGFSAITALAQDWPSFRGPNASGVAEGTKPP
                     TTWDVEKSQNVLWKASIPGLSHASPIVWGNQIFVLTAVSSDAKAGFVAKDRGIGLAND
                     DAKHTWMIYALDKRTGKVLWSDKPYEGVPRAKRHVKATQANSTPVTDGRYVVALFGSE
                     GLAAYDTKGKLLWKQDLGVLNPGLWDDKESSWGHSSSPVIYRDLVIVQADGHKQSFIA
                     AFNLKDGKQAWRVERNEITSWTTPTIYQGKNRVELIANGGRYIRGYDPLTGKELWRFS
                     DNDTQVKMQAPQ"
     gene            1133..1531
                     /locus_tag="VGD38_08655"
     CDS             1133..1531
                     /locus_tag="VGD38_08655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016275205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEY0728123.1"
                     /translation="MAKKLYVGNLAFQTTNQDLQDLFSQAGTVESAQVIEDRDTGRSK
                     GFGFVEMSTDDEAAAAIEQFHGKELAGRMLTVNEARPRENRGGGGGGRGFGGGGNRGG
                     YGGGGNRGGGGYGGGGNRGGGGGRRSEPRW"
     gene            1707..2603
                     /locus_tag="VGD38_08660"
     CDS             1707..2603
                     /locus_tag="VGD38_08660"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HEY0728124.1"
                     /translation="MTSEQRVGVQGAREKLGVNWPNVIFLVVAHVAAVAALFFWSWPA
                     VITAVVLYWVGGSLGIGMGYHRLLTHRGYKVPKAVEYFLAICGTLALEGGPIQWVVTH
                     RIHHAHADRAGDPHTPRDGGWWAHMGWILWGTAQNHDRATLARYAPDLMKDPFYRVLN
                     RVYYIPLLIVGVFLFVFGGWGVMLWGVFLRLVLMLHATWLVNSATHLWGNKRFETDDD
                     SRNTWWVALLTFGEGWHNNHHAHPTSARHGLRWYEIDVNWIGIRVLQLLGLAHSIKRL
                     RFDRAASTWQLVHTRVRSQVGQ"
     gene            2813..>5372
                     /locus_tag="VGD38_08665"
     CDS             2813..>5372
                     /locus_tag="VGD38_08665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728125.1"
                     /translation="MSLFSSSTPAAPKTLVDVVQESKLSLWLWYHSAGIAALIQGQGN
                     GKIKEQEKQRDRDEKIERIEIYPSDGVTVNPGEHVRFAAVAYDAEDNAVGGVKIKWSG
                     ENSAQGPRVRISKDGDFEAMAPGTFTVVAQAAGRSAKATVVVRPGERPDLQAPVKERR
                     EISTRDVPAESAANRPAKTQKRAANNEANKSSVAVNTKRAHVSRAAAAPPMFVSNGWD
                     STNYWSADDPGNAVGSPPGSSPENGAGAGSGNFQFKAPVLALPGRGMNVALELTYNSR
                     VWNKAGNQINYDNDKGWPAPGFSFGFGKLLGMTIPTGCMLVDADGTRHSYTGNITFYS
                     WGTVGVMHTTDGSLIDYTYQTGTNGVITYGQAKYPNGTTVTYGAYSQPGGGVFPTFIE
                     DANGNYITITYVNNQGPRIQTVTDTLGRVINFHYNVNNLLTAVTAPGLGGGTRTLVRL
                     HYHQHTINPGFSGLTANVPNYYPWVIDAIYYPGTNTGYWLNDSDSYSSYGMLAKVVEQ
                     RSMGFSASSLTDMGSISAGSVTRKEEYNYPLTPNYSLTDAPTYSQMIETWSRDGTNFD
                     SATTAYETQPEANPRVTITTLPNGTKSKQLAYNAPGQYNDGLVYRDELYVTVGQPLQV
                     SVSYWQQGAYSSPRPYRIEKTDERGQVTATEFSYGSVYNQITDVRDYNYGGTALVRST
                     RTTYQNSVNYTGTCYSYGCYGRHIFNLPLTVDVYASDNVTRVSRTEYQYDGQTLSATP
                     NVVMHDQSHNPHAEAEGFCWWENDWNDPDCWGGCYEFACDGYCNQIYNCPYDYSTEYR
                     GNITQITSYANAASLTGAVSETRRYDVTGNLVKSSTSCCEQTTSNYTIDTQYAYP"
BASE COUNT         1176 a         1479 c         1551 g         1166 t
ORIGIN      
        1 ttgcggcgcc tgcatcttca cttgcgtgtc gttgtcagag aagcgccaga gttctttgcc
       61 ggtgagtgga tcgtaaccgc gaatgtatcg tccgccgttg gcgatcagtt ccacgcgatt
      121 cttgccctgg taaatggtag gcgtggtcca tgaagtgatc tcgttgcgtt cgacgcgcca
      181 tgcttgttta ccgtctttga ggttgaatgc ggcgatgaac gactgcttgt gaccgtcagc
      241 ctgcacgatc acgagatcgc gataaataac cggactactc gagtgtcccc aggaggattc
      301 cttgtcgtcc cacagtccgg gattcagcac gccgaggtcc tgtttccaca acaacttgcc
      361 cttcgtgtcg taagcggcga gaccttcgga accgaaaagc gcgacgacgt aacggccgtc
      421 agtgacgggc gtcgagttgg cctgcgtcgc tttgacgtga cgcttcgctc tcggtacgcc
      481 ttcgtacggt ttgtccgacc agagcacttt tccagttcgt ttgtcgaggg cgtagatcat
      541 ccacgtgtgt ttcgcgtcgt cgtttgccag gccgatcccg cgatccttcg cgacgaaacc
      601 cgcctttgcg tcgctgctga cggcggtgag cacgaagatc tggttacccc aaacgatcgg
      661 gctcgcgtgt gaaagacccg gaatcgacgc cttccacagc acgttttgcg acttttccac
      721 gtcccaggtg gtgggcggtt ttgttccttc ggcgactccc gacgcgttcg gcccgcgaaa
      781 agacggccaa tcctgtgcga gtgctgttat tgctgaaaaa ccaagcagaa aaagacagag
      841 aaccgagatg ctcagacgct tcatgtacat tgacctccgg gaagcttgca agttggtcta
      901 ttcatgggca ttataaccgc cgttaatcct tctctcgcgc atcgacggtg atgcgcccgc
      961 gcacaacgat agcgccggac gtttggatgg ttcgagagca ggtccgttta aaattaaact
     1021 tgaagccgct cttgattgag catccgaacc tgatacttcg aacgccaccg ttcgccgaag
     1081 ccaaatccga ttcgtagctt cttttcttcc taacacagga aaagggattt ttatggcaaa
     1141 aaaactttat gtgggaaacc tcgctttcca aaccactaat caagacctcc aggatctgtt
     1201 ttctcaggcc ggcacggttg aatcagcgca ggtcatcgaa gaccgcgaca cgggacgttc
     1261 gaaaggcttt ggtttcgttg agatgtctac ggacgacgaa gcggctgcgg cgatcgaaca
     1321 gtttcacggt aaggaactcg ccggccggat gttgacggtc aacgaagcgc ggcctcgtga
     1381 gaatcgtggc ggcggcggtg gtggacgtgg tttcggcggc ggcggtaacc gtggcggata
     1441 cggcggcggt ggcaatcgcg gcggcggtgg ctatggcggt ggcggcaatc gtggtggcgg
     1501 cggtggacgt cgttctgagc cgcgctggta acaaagcgtt gacgatttga tgtcgctctt
     1561 tcggtagtgt cgtagttttg taatttctgc ctgcattcac actgttctca gtcgcgctgt
     1621 gtttagatag aggcgcggaa gagattgcag acaagaaaat ttcgaaactg cgatcactac
     1681 cgaaaattgt tttaaaggga aattgaatga catcagaaca acgggttggg gttcaagggg
     1741 cgcgggaaaa actgggtgtt aattggccca acgtgatctt tctagtagtg gcgcatgttg
     1801 cggcggtagc ggcgctattt ttctggagct ggccggccgt gattacggca gtcgtgctct
     1861 attgggttgg tggaagtctc ggcatcggca tgggctatca tcgtttgctc acgcatcgag
     1921 gctacaaggt cccgaaagcg gttgaatact ttctggcgat ctgcggcacg ctcgcactcg
     1981 agggcgggcc gatccagtgg gttgtgacgc atcgcattca tcacgcgcac gcggatcgtg
     2041 ccggtgatcc gcacacgccg cgcgacggcg gttggtgggc gcacatgggc tggattttgt
     2101 ggggcacggc gcagaatcac gatcgcgcga ctctcgcgcg ttacgcgccg gatttaatga
     2161 aagatccttt ctatcgtgtg ctgaatcggg tctactacat tcctctttta atagtcggag
     2221 tgtttctgtt tgtttttggc ggttggggtg tgatgctgtg gggagttttc ctgcggctgg
     2281 tactcatgct gcacgcgacg tggctcgtca actcggcgac gcatctctgg ggcaacaaac
     2341 gattcgaaac cgacgacgat tcgcgcaaca cctggtgggt agcgttgttg acgttcggtg
     2401 aaggctggca caacaaccat cacgcacatc caacctcagc gcgtcatggt ctgcgttggt
     2461 acgagatcga tgtgaactgg atcggtattc gtgttttgca gttgcttgga ttagcacaca
     2521 gcatcaagcg ccttcgtttc gatcgcgctg cctcaacgtg gcagttggtc cacacgcgcg
     2581 tgcgatccca agtgggccaa taaaaatggg ccaataaaaa atgggccaat aaaaaaaatc
     2641 agttgacaat tctccaaaag ggtctattgt tcgctctgct cccttagctc gtgatcgctg
     2701 acttcccgca gcgatcagtc cgagcatttc tctttaaaac ttttggtcct caaggagaac
     2761 gcacatggtg tccctctgtc tgcccagacg tgcaggagca attttgctcg ctttgtcgct
     2821 tttttccagc tcaactcccg ccgctcccaa gaccctcgtc gacgtggtcc aggaatcaaa
     2881 actcagcttg tggttgtggt atcactcggc cggtatcgcc gcgctgatcc agggccaggg
     2941 caacggcaag atcaaggaac aggaaaagca acgcgatcgc gacgagaaga tcgaacgcat
     3001 tgagatttat ccaagtgacg gcgtgactgt aaatcccggc gagcacgtca ggttcgctgc
     3061 cgtcgcgtac gatgccgaag acaatgcagt cggcggcgtg aagatcaaat ggagcggcga
     3121 gaatagcgcg cagggaccgc gcgtgcggat ctccaaggac ggagatttcg aagcaatggc
     3181 gccggggacg ttcaccgtcg tggcgcaagc tgcgggaaga tcggcaaagg cgaccgtagt
     3241 cgtgcgtccg ggtgaaaggc ccgacttgca ggcgccggtg aaagagcgcc gcgagatttc
     3301 gaccagggac gtacccgcgg aaagcgcagc gaatcgaccg gcaaaaacgc agaagcgcgc
     3361 cgcaaataat gaagcgaaca agagttcagt tgcggtgaac acgaagcggg cgcatgtgtc
     3421 acgcgccgct gcggcgccgc cgatgttcgt ttcgaatggt tgggacagca ccaattactg
     3481 gtcagcagac gatccgggaa atgctgtcgg tagccctccg ggtagctcgc ctgagaacgg
     3541 cgccggcgcg ggcagtggaa actttcaatt caaagcgccg gtgctcgcgc ttccgggacg
     3601 cggcatgaat gtcgcgctcg aactgacgta caactcgcgt gtttggaaca aggccggcaa
     3661 tcagatcaac tacgacaacg acaaaggctg gcccgcgccc ggtttttctt tcggctttgg
     3721 caagttgctg ggaatgacga tcccgaccgg ttgcatgctc gtcgatgctg acggcacgcg
     3781 gcacagttac accggcaaca tcacgttcta cagttggggc acggtcggcg tcatgcacac
     3841 cactgacggt tcgctgatcg actacacgta tcagacgggc accaacggcg tcatcactta
     3901 cggccaggcg aaatatccca acggcacgac cgttacctac ggcgcctatt cacaacccgg
     3961 cggcggtgtg ttcccgacgt tcatcgaaga cgccaacggc aattacataa ccatcactta
     4021 cgttaacaac cagggcccgc gtattcagac agtcaccgac acgctcggcc gcgtgatcaa
     4081 tttccactac aacgtgaaca acctacttac ggctgtcact gcgcccggtc tcggcggcgg
     4141 cacacgcacg ttagtccggc ttcattacca tcagcacacg atcaaccccg gattcagcgg
     4201 gctcaccgcg aatgtgccta actattatcc gtgggtgatt gacgcgatct actatcccgg
     4261 aaccaacacc ggttactggc tcaacgattc agattcctac tcgagctacg gcatgctcgc
     4321 gaaagtggtc gagcagcgtt cgatgggttt ctctgcgtcg tcgctgacgg acatgggctc
     4381 gatctccgcc ggctcggtta cgcgcaaaga agagtacaac tatccgttaa cgcctaatta
     4441 cagccttact gacgccccga cttattcgca aatgatcgag acgtggtcgc gtgacggtac
     4501 gaatttcgat tcggcgacga cggcctacga aactcagccg gaagcaaatc cgcgcgtgac
     4561 gataacgacg ttgccaaacg gaacgaagag caagcagctt gcttacaacg cgcccggtca
     4621 gtacaacgac ggcctggtct atcgcgatga gctttatgta accgtggggc aaccgctgca
     4681 agtcagcgtt tcgtactggc aacagggcgc gtatagttca ccgcgcccgt atcgaatcga
     4741 gaaaactgac gagcgcgggc aggtgactgc cacggaattc tcgtacggca gtgtttacaa
     4801 ccagatcacg gacgtacgcg attacaacta cggcggcact gcgctcgtgc gctcgactcg
     4861 caccacttac cagaacagcg tcaactacac cggaacctgt tacagctacg gctgctatgg
     4921 acgtcacatt ttcaacctgc ctttgacggt cgacgtgtat gcgagtgaca acgtcacacg
     4981 tgtgtcccgc accgagtacc agtacgacgg ccagacactc agcgcgacgc cgaacgtcgt
     5041 catgcacgac cagtcacaca atccgcacgc ggaagccgaa ggtttttgct ggtgggaaaa
     5101 cgactggaac gatcccgatt gctggggcgg ttgctatgaa tttgcctgcg atggttactg
     5161 caaccagatc tataactgtc cttacgatta ttcgactgag taccgcggca acatcacgca
     5221 gatcacgagc tatgcgaacg ccgcaagtct gaccggggcc gtttccgaaa cgcggcgtta
     5281 cgacgttacc ggaaacctcg tgaagagctc gacgtcgtgt tgcgagcaaa cgacttccaa
     5341 ctacacgatc gacacgcaat acgcttatcc at
//
LOCUS       DASWTX010000568         1670 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_378564, whole genome shotgun sequence.
ACCESSION   DASWTX010000568 DASWTX010000000
VERSION     DASWTX010000568.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1670
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_378564"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(216..551)
                     /locus_tag="VGD38_08670"
     CDS             complement(216..551)
                     /locus_tag="VGD38_08670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728126.1"
                     /translation="MNEHKYTSTHANQLGFGLPQLLITIAIVSVVAAMAVMGVTRARA
                     SMRLSNATRQFAAYIERARADAVRRHGQSSVQMLTNVASSVTMVFAGDGSVTTQTFPL
                     ETTSPSSPS"
     gene            complement(758..1237)
                     /locus_tag="VGD38_08675"
     CDS             complement(758..1237)
                     /locus_tag="VGD38_08675"
                     /inference="COORDINATES: protein motif:HMM:NF014525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEY0728127.1"
                     /translation="MKSSTPQPDINVTPLIDVLLVLLIIFMVASPLRPSRFTAKLPAE
                     PQHDLPRLEPDKRTLVVTIEPDNTLRLDALTEMGTVDDPSKLNTRLVALFEERTRNKV
                     YRDDMRTRIDLPDRLRVEKTVFIKAPRNMPYGRIMRVMDGLKGAGAEPIGLQLDDLK"
     gene            complement(1279..>1670)
                     /locus_tag="VGD38_08680"
     CDS             complement(1279..>1670)
                     /locus_tag="VGD38_08680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEY0728128.1"
                     /translation="LSTPVYNYTWPLFPYIWNEIKFQIAYDSDLEFVAATMREVAEKE
                     VGEAMMKQVTVFRELLAQTPVNQLEVQERPVVMFRVSENTWLEAIVRYLVHPKEAGRV
                     KTRLIEDLLKELNAAPDRVLFPKGNVR"
BASE COUNT          354 a          455 c          490 g          371 t
ORIGIN      
        1 tccgatctca ggcgtggccg acccatccgg aaccacgtcg ccggaaacgt tcgcgttgta
       61 gttcacgtcg gggaccgacg cgtcgtgaaa gatctcggaa tcgatcgtca cgtcgcccga
      121 gccggtgatg ttcacgttcg ccgtgcccgc ttcgttgcta aacccgacgg aaatctcaac
      181 gggaatgcgg ccgcgccagt caaacgtgat cgtcttcagc tcggtgatga aggtgacgtt
      241 gtttcgaggg ggaatgtttg agtggtgacg ctaccgtcgc ccgcaaaaac catcgtcacg
      301 ctggaggcga cgttcgtgag catctgcacg gacgactggc cgtgacgtcg cacggcgtcg
      361 gcacgagcgc gttcgatgta ggccgcgaac tgccgcgtcg cattcgacag gcgcatagac
      421 gcacgagcgc gcgtgacgcc catcactgcc attgcagcca ccactgaaac aatagcaatg
      481 gtgatcagca actgcggtag accgaagcca agctgattcg cgtgagtaga ggtgtattta
      541 tgttcgttca tggcggtcac atggtgggga taagcgacag cgcgtggaga aacgcccggt
      601 caagacagac cgccaggagg tgtttcgccg tgctgagagt cacggtacga aatacagatg
      661 tgaaactctt gcaaatccct tctctggtcc atcctgctgg taagagtgga ccagagaggc
      721 gagcctactg cacgaactgt tccacaacga tcgggaatta cttcaaatca tccagttgca
      781 ggccgattgg ctcggcgccc gcgcccttta gaccatccat tacgcgcatt attcttccgt
      841 acggcatgtt gcgtggggct ttgatgaaca ctgtcttttc gacacgtaat cggtcaggca
      901 ggtcaattcg agtgcgcatg tcgtcgcgat agaccttgtt tcgcgttcgt tcttcgaaga
      961 gtgccaccaa cctggtgttc aatttggaag gatcgtcgac agtgcccatt tctgtcagtg
     1021 cgtcgagacg taaagtgtta tccggctcga tcgtgacgac cagcgtccgc ttgtctggtt
     1081 cgagccgcgg caggtcgtgt tgcggctcag ccggcagttt tgcagtgaac cggctgggcc
     1141 gcaggggtga ggcgaccatg aatatgatta ggagaacgag aagcacgtcg atgagcggcg
     1201 taacgttgat gtcgggttga ggcgtgctgc ttttcatggc gtcttagaca attcgacgcc
     1261 gaaaaggttc ccggattctt acctgacgtt gcccttggga aagaggacgc gatcgggagc
     1321 ggcattgagt tccttcaaca agtcctcgat cagacgcgtc ttcacacggc ctgcttcttt
     1381 cggatggacc aggtaacgaa cgatcgcttc gagccacgtg ttttcactga cacgaaacat
     1441 cacgaccgga cgctcctgca cttcgagctg gttcaccggt gtttgggcca acagctcgcg
     1501 aaagacagtc acttgtttca tcatcgcttc gccgacttcc ttctccgcca cctcgcgcat
     1561 cgtcgcggcc acaaactcga gatcggaatc gtaagcaatc tgaaacttga tctcgttcca
     1621 gatgtaggga aacagcggcc atgtgtagtt gtaaaccgga gtgctgagga
//
LOCUS       DASWTX010000569         2615 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_52501, whole genome shotgun sequence.
ACCESSION   DASWTX010000569 DASWTX010000000
VERSION     DASWTX010000569.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2615
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52501"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(183..446)
                     /locus_tag="VGD38_08685"
     CDS             complement(183..446)
                     /locus_tag="VGD38_08685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728129.1"
                     /translation="MALARGDLSPFSRDELLVIELADATVETPSNISDDLYARLREKF
                     SEEQLLQLSAQIAFENYRARLNRVFDVGSDEIYKPAAVQVKPT"
     gene            complement(501..743)
                     /locus_tag="VGD38_08690"
     CDS             complement(501..743)
                     /locus_tag="VGD38_08690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728130.1"
                     /translation="MNRIKGLEKSEAPWHLRWFYTTMRKMFGKDLTPVKMQMKVPGLV
                     WGSVGMEAGLGSKRRVSLRFIQLGKVRTAARVGCPF"
     gene            complement(750..1328)
                     /locus_tag="VGD38_08695"
     CDS             complement(750..1328)
                     /locus_tag="VGD38_08695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728131.1"
                     /translation="MKFCKFCGANLQAVREALDNREAGSKFDWGDTWVAEMFRSGQAA
                     ELRKLEMERRMGITPEVKRYNEIKAGVITSSVGVGVSIFLFVFMQGLVKVVDPEAQQI
                     LPHLWIAGVIPFFVGLALIINGLVVSKKMAEVQEREMRKLNSPGVDAFTAETAAQRSL
                     RPAETNEFIPTGFSVTEQTTRHLAGSEQNPKH"
     gene            1464..>2615
                     /locus_tag="VGD38_08700"
     CDS             1464..>2615
                     /locus_tag="VGD38_08700"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY0728132.1"
                     /translation="MQAVPVATIAHYRIIEPIGAGGMGAVYKAYDNKLHRTVALKVLP
                     PEYVSQQDRRRRFFQETRAASALTHPHILTVYEVGEDDGKPYIAMEFIEGETLRQKIR
                     ASNLQLKDSIEIAIQIAAGLARAHELGIIHRDLKPENLMLSRDGYAKILDFGLAKLVA
                     ERDRALVADSDQKTLLRGVETQSGTLMGTVNYMAPEQLLGQRVDRRCDVFSFGVVLCE
                     MLTGIAPFVHDNHIDTMHAILHRPPQFPGDGRAPLPSELQRILTKALAKTPKERYQTI
                     DELAAELKQIKRDLDLGKTLPVAQATRLILKRVTPGTRAIDYEQELNEAQFKAVTTTE
                     GPLLIVAGAGTGKTRVLTTRFAHILMSARAFPNQVLAVTFTNKAAREMRE"
BASE COUNT          597 a          852 c          669 g          497 t
ORIGIN      
        1 cggagtacga cttttcgaag ctgaatggtc acgtacgcgg caagtacgtc gaaagatatc
       61 gcgaagggac caatctggtc ctgcttgacc cagacgtcgc cgccgccttt cccgacgcca
      121 aggccgtcaa tgatgcgttg cggctattac ttcagcacaa acacccacca acgagataag
      181 cttcaagtcg gtttgacttg gacggcggct ggtttgtaaa tctcgtcact cccaacatcg
      241 aacacacgat tcaagcgcgc gcggtagttt tcgaaggcga tttgggcgct gagttggagg
      301 agttgctctt cggagaattt ctcgcgaagg cgggcgtaga gatcgtcgga gatgtttgag
      361 ggtgtctcga ccgtcgcgtc cgcaagctct atcaccaaaa gctcgtcgcg cgagaacggc
      421 gagaggtcgc cgcgggcgag cgccaacaat ttctcatccg ttaatcccgc ttttctgcca
      481 acggcagaat tgatgtccac tcaaaacgga cacccgacac gcgccgctgt acgcactttc
      541 cccaactgaa taaaccgcaa cgacacgcgc cgcttcgaac ccagtccggc ttccatccca
      601 acgctgcccc acaccaagcc cggcaccttc atctgcatct tcaccggcgt caggtctttg
      661 ccaaacatct tgcgcatcgt ggtgtagaac caacgcaaat gccacggcgc ttcactcttt
      721 tccaatccct tgattcgatt catggatttt caatgcttcg ggttctgctc tgaacccgcg
      781 aggtgtctcg tcgtctgttc cgtcacacta aacccggtcg gaataaactc gttcgtttcc
      841 gccggacgca agctgcgctg agcagcggtc tcggcagtaa aagcgtcaac gccgggcgag
      901 ttgagctttc gcatctcacg ctcctgaacc tcagccatct tcttgctcac cactaaacca
      961 ttaatgatga gtgcgaggcc aacaaagaac ggaatcacac ccgcaatcca aagatgcgga
     1021 agtatctgct gcgcctctgg atcaacaact ttcaccaacc cctgcatgaa cacgaacaaa
     1081 aagatcgaca ccccaacacc gacactgctc gtgatcacgc ccgccttgat ttcgttgtag
     1141 cgcttgacct cgggcgtgat gcccatgcgc cgctccatct cgagcttgcg caactccgca
     1201 gcctgtcccg aacggaacat ctccgcgacc caagtgtcgc cccagtcaaa cttgcttccc
     1261 gcctcgcggt tgtcgagcgc ttcgcgcacg gcctgcagat tggccccaca aaacttgcaa
     1321 aacttcacat cgtcgctttg gtttgaagaa caacgcggac aaatcatagg cagctcctat
     1381 cgaaagttgc tggaagatac gaccattcta cgaccttggt tcttgttccc aaaaagctga
     1441 gttggtatcg ttaggcccca gccatgcaag ccgttcccgt agcaaccatc gcccactacc
     1501 gcatcatcga gcccatcggc gccggtggca tgggcgcggt ctacaaggct tacgacaaca
     1561 aactgcaccg caccgtcgca ttgaaagtgc tgccgccgga gtacgtctcg caacaggacc
     1621 gccgccgccg tttcttccag gaaacacgcg ccgcgtcggc cctgacgcat ccacacatcc
     1681 tgaccgttta cgaagtcggg gaagacgacg gcaagcctta catcgcgatg gagtttatcg
     1741 aaggcgaaac cctgcggcag aagatcaggg caagcaacct gcaactgaaa gactcgatcg
     1801 agatcgcgat ccagatcgcc gccggactcg cgcgcgcaca cgagctcggc atcatccatc
     1861 gcgatctcaa acccgagaac ctgatgctga gccgcgacgg ctacgccaag attctcgact
     1921 tcggtctcgc caaactcgtc gccgaacgcg atcgcgcgct cgtcgccgac agcgatcaga
     1981 aaacgctgct tcgcggcgtc gaaacccagt ccggcacgtt gatgggaacc gtcaactaca
     2041 tggcgccgga acagttgctg ggccaacgcg tcgatcgccg ctgcgacgtg ttttcgttcg
     2101 gcgtggtgct ttgcgagatg ctgaccggta tcgccccatt tgttcacgac aaccacatcg
     2161 acacgatgca cgcgatcctt catcgcccgc cgcagtttcc cggtgacggc cgcgcgccgc
     2221 tcccttccga gttacaacga atcctgacga aagcgctcgc aaaaacaccg aaggaacgct
     2281 accaaacgat cgacgagctc gccgccgaac tcaaacagat caaacgcgat ctcgatctcg
     2341 gcaaaacgct tccggtggct caagcgacgc gcctcatcct gaaacgcgtc acgcccggca
     2401 cacgcgcgat cgattacgaa caggaactaa acgaagcgca gttcaaagcg gtaacgacga
     2461 ctgaaggacc gttgctgatc gtcgccggcg cgggcacggg caagacgcgc gtgctgacga
     2521 cacgcttcgc ccacatcctg atgagcgccc gggcctttcc gaaccaggtg ctcgccgtga
     2581 ccttcaccaa caaggcggcg cgcgagatgc gggaa
//
LOCUS       DASWTX010000570         7665 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_30727, whole genome shotgun sequence.
ACCESSION   DASWTX010000570 DASWTX010000000
VERSION     DASWTX010000570.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7665)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7665)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7665
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30727"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3102)
                     /locus_tag="VGD38_08705"
     CDS             complement(<1..3102)
                     /locus_tag="VGD38_08705"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY0728133.1"
                     /translation="MKKTTILFAAAMLLIASVSAFAREARLVRYPHYHNGRVVFTYLA
                     DIWTADENGQNVQRLTVNRARDVYGRFSPDGKWIAFSSDRNGNLDVFLIPAGGGQAKQ
                     LTAHSADDTVLGWAADSRSILFSSNRGEDFMPQLYLVSTEGGMPMKAGTDMGVMASYS
                     PDGQKLAYNQKSQVYWRKYYRGSFQSDIMVMDVAAKKFTQLTDFDGLDSWPMWGRDGY
                     IYFVSDREGAGLTNIYRVSENGGKADKVTTFKAGDVRWPAISADGRTIVFEHDFGIWK
                     LDVASKRATPITLNIDAETQENLSEVQSFSSQTDDYDLAPNSRRIAFSIHGEIFTAPV
                     EEGDLKQLTDGPARDRGVGYSPDGKWLAYVSDQSGREEIYVVPTDGSAPAQKLTDIDA
                     LKQGYNWSPDSKEIAFASSDDKLRKLTVATKQIVELDTSRYGAFSTPVWSPDGKWIAY
                     SKNDISRTADIYLVAASGAEKEPHRVTFDSNSDGNPVFGPDGRKLFFQRVEATGNTSQ
                     PNSVQIYSMWLERQEKDPDDPEEREAEPPATPPAAAEGGEGAAPAARPRPPANRPLRE
                     IKMDWDGMKRRTRQITRMPFPILGYTIAPDSRTIVFVTTEPAGPASIPVIYSVQDDGR
                     RLSRITAGQPPNEGDGGGPGGGGGFGGGISGLNISRDGRTLFFRERDGVWSVPIAAGG
                     PGAGAAAAAAAGTGGGGGAAGAGGRRRINFNVRVAINRPAEWAEMFDDGWRTMKYRFY
                     DPKMHGMDWDAMRAKYRPLVEFVGDRQELLNIINEMIGELNASHTGAAPPPRGQGGGG
                     VSTGHLGMELEQDKAAGRYRVAYIYEDGPADKDWVKVKVGDYLLAIDGKPVKAGDEYW
                     QLLNSRLNRKVTATFNSKPAEDGAWHTRIEAITGGAYSQLRYERWVKERRQKVDELSG
                     GRIGYLHIQAMNPPSLRKFEKEIREFRNKEAMVIDQRWNGGGNIEQELLAILVQRQYQ
                     VWQPRGTEATGRPFAGFFGPKVVLQNWRSASNAEMFPAGFRALGLGKVVGTPTMGAVI
                     GTGS"
     gene            3171..3683
                     /locus_tag="VGD38_08710"
     CDS             3171..3683
                     /locus_tag="VGD38_08710"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY0728134.1"
                     /translation="MRIEKANWHDCAVTTIRCRKMGAADVRDAFHMLSDFLSADEHYL
                     ASSQAYGDLGMKGLNDALDLFLEHPELGFVWMAYDDQGCAGVCVVCYAISTSMGSVVA
                     KLDDVSVKSNRRGAGIGTELLNQLKDQLRKESVARIDVAVHLDNPQAKHFYEKAGFVA
                     LNEERLSCVI"
     gene            complement(3680..5056)
                     /locus_tag="VGD38_08715"
     CDS             complement(3680..5056)
                     /locus_tag="VGD38_08715"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY0728135.1"
                     /translation="MPTTLKRENLVSFANEHREEYESLLRRFVETPTVSVDPTHLDDI
                     RKGVELTVATLEQFGGKAEVHRADKGNPVVHGVFGNNSGRPTVTVYNHIDVQPASKET
                     EPWDTEPFVFTKKGDSYYGRGTTDDKGPALTALFGARAAIEADIPVNIRFLWEFEEEI
                     GSPNFETIISKAAKDLRTDSVVVSDTVWVSRNRPASSAGLRGLLGFRLMLETASVDTH
                     SGETGGASRNPIAELIQLVSELYDARTGKVKIKGFYDDVIPPSKKELQDWANCGFSVS
                     AYKKAHHLKKMRTEDPLEVMKRIWGMPTLEIHGVVGGYQGPGLKSIVPPRAEVKASCR
                     LVPGQDVKKLRKLIAAAVKERNPDVKIQFEHGAPAFRTVLEGPLPEALKRAVKFAFNR
                     DAVFVRDGGTIGAMTSIEKVLRCPVLFLGLSLPEHGYHAPNENFDWQQASGGMVAFAK
                     YFEEISRL"
     gene            5463..7001
                     /locus_tag="VGD38_08720"
     CDS             5463..7001
                     /locus_tag="VGD38_08720"
                     /inference="COORDINATES: protein motif:HMM:TIGR00225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY0728136.1"
                     /translation="MIRSDLSEALSVIQSNHIDGKKLDYNAIFKSSIGSMLSVLDPHS
                     TYFDPVEYASFRTEQRSEYFGIGATIEDLRQGTDVNTYIRATFPESPAHRAGLRFGDR
                     VLAIDGQSMAGKTYPEVRKFLLGPRGTTVKVTVERLESRAHETVSIVRDAVSLPSIAQ
                     AYMLRPGVGYVAMTGGFNLTTDDEFGDALRFLHSKGMNMLVLDLRGNRGGLLIQAVRV
                     ANRFLQRGQLIVRQQGRFRDSSQSYGAVNENPDNVAVVVLVNGESASAAEIVAGALQD
                     HDRALIVGETTFGKGLVQFPFQLDYDSALLLTIAKYYTPSGRLIQRDYSNGGNYDYYF
                     RGGLSADKSAQPQTPTGPESHTDMGRAVYGGGGIAPDEIVKPGMISAAERHLRDVLFA
                     FSLELTAGRIEGFQDYKIQRPIEFDHDLVAEDYPITDPLFRELKAFAAKKPLFKVTPD
                     QLDRSRAYAERQLRYNILSPAYGFRTATQVFNDADPQIARAVDAMPRARELALAASRA
                     RARG"
     gene            7020..>7665
                     /locus_tag="VGD38_08725"
     CDS             7020..>7665
                     /locus_tag="VGD38_08725"
                     /inference="COORDINATES: protein motif:HMM:NF012981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEY0728137.1"
                     /translation="MLIIVNNVAAKARQSWPKIKQQLDAAGVDYKVHHTKHQGDATVQ
                     TSVALKSGTQVIVVVGGDGTLSEAAGGFFEINEDLDVLPAPINPEATLAVLPAGTGDD
                     FARGLRRKRAPLEDWIGTLLAFVRGEATSRQIDVLYGRCDGFQTPFICLNASTMGIGG
                     ETASRVAAQGGFMRKFPGEFRFVYAAVGALAAWRERRVRVTVDNRVVADGPMNLV"
BASE COUNT         1481 a         2280 c         2239 g         1665 t
ORIGIN      
        1 actgcccgtt ccgataaccg cacccatcgt cggcgttcca acaacttttc caagaccaag
       61 tgcacggaag ccagcgggga acatctcggc gtttgaagct gagcgccagt tttgcaacac
      121 gaccttcggt ccaaagaatc ctgcaaacgg acggccggtg gcttcagtgc cacgcggctg
      181 ccacacctga tactgccgtt ggaccaggat cgcgagcagc tcctgttcga tgttgccgcc
      241 gccgttccaa cgctgatcga tgaccatcgc ttccttgttg cgaaactcgc gaatctcctt
      301 ttcaaacttg cgcagagacg gcgggttcat cgcctgaatg tggagatagc cgatgcgtcc
      361 gccggaaagc tcgtcgactt tctggcgtcg ttccttcacc cagcgctcgt aacgcaactg
      421 gctgtacgcg ccgccggtga tggcttcaat gcgtgtgtgc cacgcgccgt cttcagcggg
      481 tttgctattg aacgtggcgg tcaccttgcg gttcaaccgg ctgttcaata actgccagta
      541 ctcgtctccg gcttttaccg gcttgccgtc aatcgcgagc aggtagtcgc cgactttcac
      601 cttcacccag tctttgtcgg ctggaccatc ttcatagatg taggcgacgc gataacggcc
      661 cgcggctttg tcctgttcga gctccatgcc gaggtgaccc gttgaaactc cgccaccgcc
      721 ttgaccacgc ggcggcggcg ccgcacccgt gtgcgaagcg ttcaactcgc cgatcatctc
      781 gttgatgatg ttcagcagtt cctgacgatc gccgacgaac tcgactagcg ggcgatactt
      841 cgcgcgcatc gcgtcccaat ccatgccatg catcttcgga tcgtagaagc gatacttcat
      901 cgtgcgccat ccgtcgtcaa acatctcggc ccattccgcc ggacgattga tggctacgcg
      961 aacgttgaaa ttgatccggc gtctgccacc ggcgccggcc gcgccaccgc caccgcctgt
     1021 tcctgctgcg gctgcggctg ctgcgcctgc tcccggtccg cctgccgcga tcggcactga
     1081 ccaaacacca tcgcgttcgc ggaagaagag cgtgcggcca tcgcgcgaga tattcagacc
     1141 ggaaattccg ccaccaaaac caccgccacc acctggacca ccaccgtcgc cttcattcgg
     1201 cggttgaccg gcggtgatac gcgagaggcg ccggccgtca tcctgaaccg agtagatcac
     1261 gggaatgctc gcggggcccg cgggctccgt ggtgacgaaa acgatcgtgc ggctgtcggg
     1321 cgcgatcgtg tagccgagaa tcggaaacgg catgcgcgtg atctggcgcg tgcggcgctt
     1381 cattccgtcc caatccatct tgatctctcg cagcggacga ttcgcgggcg gacgcggacg
     1441 tgctgccggt gctgctcctt caccgccttc cgccgccgca ggaggcgttg cgggcggttc
     1501 ggcttcgcgc tcttccggat cgtcaggatc tttttcctga cgttcgagcc acatcgagta
     1561 gatctgaact gagttcggtt ggctggtgtt gccggttgct tctacgcgtt ggaagaaaag
     1621 cttgcgtccg tctggtccaa agaccgggtt gccgtcgctg tttgaatcaa acgtgacccg
     1681 gtgcggttcc ttctccgcgc ctgacgcagc gaccagatag atgtcagccg tgcgcgagat
     1741 gtcgttcttg gagtaggcaa tccattttcc gtccggcgac caaacgggcg tgctgaaagc
     1801 gccgtagcgc gacgtgtcga gctcgacgat ctgcttcgtg gcgacggtca gcttgcgcag
     1861 tttgtcgtct gatgaagcaa acgcgatctc tttcgagtct ggcgaccagt tgtaaccctg
     1921 cttgagcgca tcgatgtccg tgagcttttg tgcgggagct gaaccgtcgg tcggcacgac
     1981 gtagatttct tcgcgtccgc tctggtccga aacgtaggcg agccacttgc cgtccggcga
     2041 ataaccaacg ccgcgatcgc gcgctggacc atcggttagt tgtttcagat cgccttcttc
     2101 aaccggcgcg gtaaagatct cgccgtgaat cgagaaagcg atacgtcgtg aattcggcgc
     2161 gagatcgtaa tcgtccgttt gcgagctgaa cgactgcact tcgctgaggt tctcttgcgt
     2221 ctccgcgtcg atgttcaacg tgatcggcgt ggcgcgtttc gaagcaacgt cgagtttcca
     2281 gatgccgaag tcgtgctcga aaacgatcgt gcggccatcg gcgctgatcg cgggccaacg
     2341 cacgtcgccc gctttgaacg tcgtgacttt atctgccttg ccgccgtttt ccgagacgcg
     2401 gtagatgttc gtgagcccag cgccctcgcg atcgctgacg aagtagatgt aaccatcgcg
     2461 accccacatg ggccatgaat cgagaccgtc gaagtccgtc aactgagtga acttcttcgc
     2521 ggcgacgtcc atcaccatga tgtcgctctg gaaagagccg cgatagtact tgcgccagta
     2581 gacctgcgac ttctggttgt acgcgagctt ttgcccgtcg ggcgaatacg aagccatcac
     2641 gcccatgtcg gtgcccgcct tcatcggcat tccgccttcg gtgctgacga gataaagctg
     2701 cggcatgaag tcttcgccgc gattactcga aaacagaatc gagcgcgagt cggcggccca
     2761 accgagcact gtatcgtcgg ccgagtgcgc ggttagctgt ttcgcctggc caccgccggc
     2821 cgggatcagg aacacgtcga gatttccgtt acggtcactc gagaacgcga tccacttgcc
     2881 gtccggcgag aaacgtccgt aaacgtctcg ggcgcgattg accgtcagcc gttgcacgtt
     2941 ctgaccgttt tcgtcagcgg tccaaatatc ggcgagatac gtgaagacga cgcgtccgtt
     3001 atggtaatgc gggtagcgaa cgagccgcgc ttcgcgggcg aacgccgaga ctgatgcaat
     3061 gagtaacatt gctgctgcga agagaatggt tgtctttttc atggctcctg acctgcgctc
     3121 aattcggatt ggaaattacg tggaagtggg ccgaattata tccgggaaac ttgcgaattg
     3181 agaaggcgaa ttggcatgat tgcgccgtga cgacgattcg ctgccgaaag atgggcgccg
     3241 ccgatgtgcg tgacgcgttt cacatgctga gcgattttct cagcgcggac gaacactacc
     3301 tcgcaagcag tcaggcttac ggcgatctcg gaatgaaggg tctgaacgac gcgctcgatc
     3361 tgtttttaga acatcccgaa ctcggttttg tgtggatggc ttacgacgac cagggctgcg
     3421 ccggcgtgtg cgtcgtgtgt tacgcgatct cgacgtcgat gggttctgtg gtcgcgaaac
     3481 ttgatgatgt atccgtgaaa tccaatcgcc gtggcgccgg aatcggcaca gaacttttga
     3541 accagcttaa agatcaactg cgaaaagaat ccgtggcccg gatcgacgtc gcagtgcacc
     3601 tcgacaaccc gcaagcgaaa cacttctacg aaaaggccgg ttttgtcgcc ctcaatgaag
     3661 agcgcctgtc ttgcgtgatc taaagccgag aaatttcttc gaagtacttc gcaaacgcca
     3721 ccattccacc tgacgcctgc tgccagtcga agttctcgtt cggcgcgtga tagccgtgct
     3781 cgggtaacga caggccgagg aataacaccg ggcaccgcag gactttctcg atactcgtca
     3841 tcgcgccaat cgttccacca tcacgcacaa acaccgcatc acgattgaaa gcgaacttca
     3901 ccgcacgttt caacgcttcc ggcagtggtc cttcaagcac ggtgcgaaac gccggcgcgc
     3961 cgtgttcaaa ctgaatcttc acgtccggat ttctttcttt caccgccgcc gcgatcagct
     4021 tccgcagttt cttcacatcc tgccccggca ccaggcggca cgacgctttc acttccgcac
     4081 gcggcggcac gatcgacttc aaacccggtc cctggtaacc accaaccaca ccgtgaatct
     4141 ccaaggtcgg catgccccag atgcgcttca tcacttcgag cggatcttcc gtgcgcatct
     4201 ttttcaagtg gtgcgccttc ttgtacgcgc tgactgagaa accgcagttt gcccagtcct
     4261 gaagttcttt tttcgacggc ggaatcacgt cgtcgtagaa gcctttgatt tttactttgc
     4321 cggtgcgcgc gtcgtagagc tcgctgacga gttgaatcaa ctccgcgatc ggattgcgcg
     4381 aagcgccgcc ggtttcgccg gagtgcgtgt cgacagatgc tgtttcgagc atgagtctga
     4441 aacccagcag accgcgcaat cccgcggagc ttgcgggccg gttgcgcgag acccaaaccg
     4501 tgtcggaaac cacgaccgag tcggtgcgaa gatctttcgc ggctttggaa atgatcgttt
     4561 cgaagttcgg cgaaccgatc tcctcttcaa actcccagag gaaacggatg ttgaccggaa
     4621 tgtccgcttc gatcgccgcg cgcgcgccaa acaacgcggt caacgccgga cctttgtcgt
     4681 cggtcgttcc gcgtccgtaa tagctgtcgc cttttttagt gaagacaaac ggttccgtgt
     4741 cccacggttc ggtttctttc gaagcgggct gcacgtcgat gtggttgtaa acagtcacgg
     4801 tcggacggcc gctgttgttg ccaaacaccc catgaacaac gggatttccc ttgtccgcgc
     4861 gatgaacttc ggctttgccg ccgaactgtt cgagagtcgc aactgtcagc tcaacgcctt
     4921 ttctgatgtc gtccaaatgt gtcggatcga cggaaacagt cggcgtttcg acaaaccggc
     4981 gtagaagtga ttcatattcc tcccgatgtt cgttcgcaaa agacacaaga ttctcccgct
     5041 tcaatgtagt tggcatcaac ttcctccggc gaattgtcgt ttagagctta gggccaataa
     5101 tacatgagga ttgtagattc gcgggcgacg aaaatcgggg tcgtcgcatc tacaaaagct
     5161 caggctcttc gtgttattct ggcggtcccc gagtttccgt ccgaaacccg gccccgaacc
     5221 tggccccgaa tccgaccaga ccgagaaggg tccggcgccg cataaccggt tgatagcgca
     5281 gacagtttta ggagggttgc gtgagaaaaa gcttttttgc cccggggatt cttttcctta
     5341 ttttcgcctt aacagttccc gcattcattc tcgctcagaa caggtcagcc agacgggcca
     5401 cacctcccga taagagtgcg accaccggta ctgcgccgag caagggtgtc gtgacgagcc
     5461 cgatgattag aagcgacctg tcggaagctt tgagcgtgat tcagtcgaac cacatcgacg
     5521 gcaagaagct cgactacaac gcgatcttca aatcctcgat cggcagcatg ttgagcgtgc
     5581 tcgatccgca ctcgacttac ttcgatccgg tcgaatacgc gtcgttccgc accgaacaac
     5641 gttcggaata tttcggcatc ggcgccacga tcgaggatct tcgtcagggc actgacgtca
     5701 atacgtacat tcgcgccacc ttcccggaat cgcccgcgca tcgtgcggga ctgcggttcg
     5761 gcgatcgcgt tctcgcgatc gacggccagt cgatggccgg caagacttat ccggaagtgc
     5821 gaaagttttt gttgggaccg cgcgggacga cagtgaaagt cactgtcgag cgcctagaga
     5881 gccgcgcaca tgaaaccgta agcatcgttc gtgatgcggt ttcgctgccg tcgatcgcgc
     5941 aggcttacat gcttcgtccg ggcgtcggct atgtggcgat gacgggcggt ttcaatctga
     6001 ctaccgacga cgaatttggc gacgcgctga ggttcctgca cagcaaaggc atgaacatgc
     6061 tcgtgctcga tctgcgcggc aatcgcggcg gcctgttgat tcaggcagtg cgcgtcgcga
     6121 acaggttcct gcaacgcgga cagctgatcg tacggcagca gggccgcttc cgcgatagtt
     6181 cgcagtcgta tggggccgtg aacgagaacc cggacaacgt tgcggtggtc gtgctggtta
     6241 acggcgaatc tgcttccgcg gcggagatcg tggcgggtgc gcttcaggat cacgatcgcg
     6301 cgctgatcgt cggtgagacg accttcggca agggcctggt gcagtttccg tttcagttgg
     6361 actacgactc ggcactgctc ttgacgatcg ccaagtacta cacgccgtcc ggccgcctga
     6421 ttcaacgcga ctattccaac ggcggcaatt acgactacta cttccgcggc ggtctctcgg
     6481 ccgacaagag cgcccagccg cagacgccga ccggccccga aagtcacact gacatggggc
     6541 gcgcggttta tggcggtggc ggtatcgcgc cggatgaaat agtgaagccg ggcatgatta
     6601 gcgcagccga gcgtcatctg cgcgacgtgc tgtttgcctt ttcactcgag ctcacggccg
     6661 gcagaatcga aggattccaa gactacaaga ttcagcgccc gattgagttt gaccacgatc
     6721 tcgtcgccga ggattatccg attaccgatc cgctcttccg cgaactgaaa gcgtttgctg
     6781 cgaagaaacc gctcttcaaa gtgacgccgg atcagctcga ccggtcgcgt gcgtatgcgg
     6841 agagacagtt gcgctacaac atactgtcgc cggcttatgg ttttcgcacg gccacgcagg
     6901 ttttcaacga cgccgacccg cagatcgcgc gggcggtcga tgcgatgcct cgcgctcgcg
     6961 aactcgcctt ggcggcgagc cgtgcgcgtg cccgcggttg agccccgctt agcggttaag
     7021 tgttgatcat cgtcaacaac gtagccgcca aagcgcgcca atcctggccg aagatcaaac
     7081 agcaactcga cgctgctggc gtcgattaca aagttcatca caccaaacat cagggcgacg
     7141 ctacggttca aacgagcgtc gccctgaaat ctggtactca agtcattgtt gtcgtcgggg
     7201 gtgacggtac gttgagcgaa gccgctgggg gcttcttcga gatcaacgaa gacctcgacg
     7261 tgcttccggc gccgatcaac ccggaggcga cgctggccgt gttgcccgcc ggtaccggcg
     7321 acgactttgc gcggggattg cgccgcaagc gagcgccgct ggaagactgg attgggacgc
     7381 tattggcttt cgttcgcggt gaggcaacgt cgcggcagat cgatgtgctc tacggccgtt
     7441 gtgatggttt ccagactccg ttcatctgct tgaatgcttc gacgatgggc atcggcggcg
     7501 agactgccag ccgtgttgcg gcgcagggtg gtttcatgcg gaagttcccg ggcgagtttc
     7561 gctttgtgta tgcggccgtc ggtgcgttgg ccgcgtggcg tgaacggcgg gtgcgcgtga
     7621 cggttgacaa tcgcgtggtg gcggatggac cgatgaatct cgtgg
//
LOCUS       DASWTX010000571         1667 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_159558, whole genome shotgun sequence.
ACCESSION   DASWTX010000571 DASWTX010000000
VERSION     DASWTX010000571.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1667
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159558"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1636)
                     /locus_tag="VGD38_08730"
     CDS             complement(<1..1636)
                     /locus_tag="VGD38_08730"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEY0728138.1"
                     /translation="MQHLAEASEAEGISPRDLREVITAGEQLKITPAIERLFAKLDGC
                     RLDNHYGPTETHLATMWRLQGRAGEWPRLPPIGGPIANVQVYVLDERYRPVPPGVVGE
                     LYIGGEGLARGYFNSPDQTAERFIPNPFSSEPGKRLYKTGDLVRRFAQERLEYVGRSD
                     RQVKVRGFRVEVAEIEATLKLHRDVRQAVVTDWDREDGRKMLAAYVVAIATSPAFISD
                     LKRLLREHLPEYMVPAVFVRMDQLPLLPNGKVDRRALPRPDKIGPEGDYEVPRTPVEE
                     VLCGVWEQVLGRERVGAEDDFFELGGHSLLATQLMSRVREAFRVDVPLRLLFEHPSPR
                     RLAHVIEVEMHGGSEPLPPVRRLARGVTAPLSFAQQRLWILDRLEPGSSAYNLPSALR
                     IDGPLDVAALERSFEEIVRRHEALRTTFAIVDGEPRQIVGPPAHAALSFIDLSQFSDA
                     ETRARRLAQEEAAKPFDLTRGPLLRATLVRLADERHLFLVTLHHIVADGWSMTLLVQE
                     LRDLYAAYSNGEEPPLTELEVTYADYALWQREWLQGE"
BASE COUNT          354 a          554 c          436 g          323 t
ORIGIN      
        1 gttcgccctg caaccactcg cgctgccaca gggcgtaatc ggcgtaagtg acttcaagtt
       61 ctgttaacgg cggttcttct ccgttgctat aagcggcata aagatctctt aactcctgga
      121 ccaacagcgt catcgaccaa ccatcggcga cgatgtggtg caaggtcacg aggaacaagt
      181 ggcgctcatc agccaaacgc acgagcgtcg cgcgcagcaa cggaccacgc gtcaggtcaa
      241 acggcttggc cgcttcttct tgcgccagcc ggcgcgccct tgtttcggcg tctgagaact
      301 gtgagagatc tataaaggac agcgccgcgt gcgccggtgg gccaacgatc tgccgcggct
      361 ctccgtcaac gatcgcgaac gtcgtgcgca gagcttcatg ccggcgaact atctcttcga
      421 aactccgctc taacgccgcc acgtcgagcg gcccatctat tcgcaacgcc gacggcaggt
      481 tgtacgcgga actccccggc tccaacctat cgagaatcca tagccgttgc tgcgcgaatg
      541 aaagcggcgc ggtaacgccc cgcgcgagcc ggcgcaccgg cggcagcggc tcgcttccgc
      601 cgtgcatttc aacttcgata acgtgggcta accgccgcgg gcttggatgc tcgaacaaca
      661 gccgcaaagg aacatcgacg cgaaacgcct ctcgcacgcg agacatcaat tgtgttgcca
      721 gcagcgaatg accaccgagt tcaaaaaaat catcctcggc cccgactctt tcccgtccaa
      781 gcacctgctc ccagactcca cacagcactt cctctactgg agtgcgcgga acctcgtagt
      841 cgccttcagg cccgatcttg tccggccgag gtagagcgcg ccgatccact ttcccgttcg
      901 gcagcagcgg caactggtcc atgcgcacaa acaccgccgg caccatgtat tcgggaagat
      961 gctcgcgcag cagtcgtttc agatcactaa tgaaagctgg tgaagtagcg atcgcaacca
     1021 cgtacgccgc caacatcttt cgcccgtctt cgcgatccca atccgtcacc actgcctggc
     1081 gcacatctcg atgaagcttc aaagtcgcct cgatctccgc cacctcaacg cggaacccgc
     1141 gcactttcac ctgccgatcg ctgcgtccga cgtactccag acgttcttgc gcaaagcgcc
     1201 gcacgaggtc gcccgttttg taaagacgct ttccgggttc gctgctgaaa ggattcggga
     1261 taaagcgttc cgctgtttga tccggactat tgaagtaacc gcgcgccaaa ccctcgccgc
     1321 cgatgtaaag ctcaccgaca acacccggtg gcacgggacg gtagcgttcg tctagcacgt
     1381 aaacctgaac gtttgcgatt ggaccaccga ttggcggcaa cctgggccac tcgccggctc
     1441 ttccttgcag tcgccacatg gtggccagat gcgtttccgt cggcccgtaa tgattgtcca
     1501 aacgacagcc atcgagtttc gcaaacagac gctcgatcgc cggcgtgatc ttcaactgtt
     1561 cgcccgccgt gatcacctcg cgcagatcgc gtggagaaat tccttctgct tcactagcct
     1621 ctgccagatg ttgcaaagca acgaatggca gaaacaatct ctcgaca
//
LOCUS       DASWTX010000572         3550 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_291769, whole genome shotgun sequence.
ACCESSION   DASWTX010000572 DASWTX010000000
VERSION     DASWTX010000572.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3550
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291769"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..458
                     /gene="metG"
                     /locus_tag="VGD38_08735"
     CDS             <1..458
                     /gene="metG"
                     /locus_tag="VGD38_08735"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR00399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methionine--tRNA ligase subunit beta"
                     /protein_id="HEY0728139.1"
                     /translation="GEVVAVFPRLDKAKILSDIDENQSVKPPAPEPPATQAEGITSFI
                     EIDDFAKVDLRVGQVLSAERLPKSDKLLLLKIDLGEEQPRQVLAGIAQYYEPEKLVGR
                     KVVVVANLKPRKLRGYESQGMVVAASYGEEGRPVIATFTEDVPNGARLK"
     gene            476..1255
                     /locus_tag="VGD38_08740"
     CDS             476..1255
                     /locus_tag="VGD38_08740"
                     /inference="COORDINATES: protein motif:HMM:TIGR00010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEY0728140.1"
                     /translation="MFTDSHAHIDGPEFDADRGEVIERAHAAGVKTILNVGTGDPHSG
                     VLERAIELGRSNPSIYTAIGVHPHDARFYNDDAESLLKKLLASERVVAWGEIGLDFHY
                     DNSPRETQLDVFRRQLRAARTCDVPVIVHTREAEGETIRILQTDYAGSNRRGVFHCFT
                     GSKELAQQAIDLNFMISFSGIVTFRKAEDLREIAKQIPLENLLIETDCPFLAPVPHRG
                     KRNEPAYVVEIARCIAELRGLPIEEVAQATTENFKRFLRIP"
     gene            1263..1811
                     /locus_tag="VGD38_08745"
     CDS             1263..1811
                     /locus_tag="VGD38_08745"
                     /EC_number="5.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate mutase family protein"
                     /protein_id="HEY0728141.1"
                     /translation="MIRKSLALIAILLLAQLAFAQQTTQPVTTVFLIRHAERADEPRQ
                     DPPLTEKGVARAEALARLLSNAGVKAIYTSQFARTKLTAEPLAKQLGVTPTALSLKIS
                     PSNPRAIADESTKETVDKILSHAGGSVLVVGHSNSIPDVIKMLGGDVVPTIDEKKFDD
                     FFVVTVYANGKAQVTHLKYGAE"
     gene            1898..>3550
                     /locus_tag="VGD38_08750"
     CDS             1898..>3550
                     /locus_tag="VGD38_08750"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728142.1"
                     /translation="MLLLLIPVSAFGQHSHAPAKEPAPVALASGLGDINLPVTTTNAE
                     AQKFFNQGLAYMYAFNHEEAVRSFKQATQLDPQLAMAYWGMALALGSNYNVQADGPSL
                     LSAYTNLQKAIELAPKASEHERAYINALSKRYSSDLNVDKQKLAVDYKNAMGELAKRY
                     PDDLDAATLYAESMMNLRPWKLWSLDGKPAEETLEIVAVLENVLRRNPNHTGANHYYI
                     HAVEASNNAERALPSAARLGKIAPKAGHLVHMPSHIYIRTGDYAEAAQSNVDAIAADR
                     EYITKTGAQGLYTMMYYNHNIHFLASANALKGRYADSIKAARELEANVAPHLKAMPML
                     EMFRPYPIISQVRFNRWDDVLKEPKPDEALKITTGFWHYARGSAYASMNQPANAEAEL
                     KALQAVAKTIPADAPMGNNVAVNVMKVADLALAGRIAFARGDKQAAFNLLNQAAAAED
                     ATSYNEPADWDLPVREVLGGMLLSTGDFAGAEKAFRGELKRHPRNGRALFGLAESLKQ
                     QGNKSSAQMVWREFETAWKDADTKLTVAALSGIQTKAENAAPA"
BASE COUNT          839 a         1041 c         1007 g          663 t
ORIGIN      
        1 tcggtgaggt agtcgctgtg ttcccacggc tcgacaaggc gaagatactt tctgatatag
       61 atgaaaacca atctgttaag ccaccggcgc ctgagcctcc cgctactcag gccgagggaa
      121 taacgagctt catcgaaatc gacgacttcg caaaggtcga tctacgcgtg ggccaggtgc
      181 tgtccgccga gcgcctgccg aagtctgaca agctgctgtt gctgaagatc gatcttggcg
      241 aagagcagcc gcgtcaggtg ctcgcgggaa tcgcgcagta ctacgagccg gagaagttgg
      301 ttggccgcaa ggtcgtcgtg gtagcgaacc tgaagccgcg gaagttgcgc gggtatgagt
      361 cgcagggaat ggtcgtcgcg gcgtcgtacg gcgaggaagg ccgtcctgtg atcgcgacgt
      421 tcacggaaga cgttcccaac ggcgcgcggc tgaagtaagc cacggacgaa cacggatgtt
      481 cacggactcg catgcgcaca ttgatggtcc agagtttgac gcggatcgcg gtgaagtcat
      541 cgaacgcgcg cacgctgccg gcgttaaaac gatcctgaac gtcggaaccg gggatccgca
      601 cagcggcgtg cttgaacgtg cgatcgaact cggacggagc aacccgtcca tttacaccgc
      661 gatcggtgtt catcctcacg acgcgcgttt ttacaacgat gacgctgaat ccctgctgaa
      721 aaagctgtta gcaagcgaac gcgtcgtcgc gtggggcgag atcggcctcg acttccacta
      781 cgacaactca ccacgcgaga cacagctaga cgtcttccgg cgtcaactcc gcgccgcgcg
      841 cacgtgcgac gtgcccgtga tcgtccacac acgcgaagca gagggggaaa caatccgaat
      901 tctacaaacc gattacgcgg gatcgaaccg tcgcggcgtg ttccattgct tcaccggcag
      961 caaagaactc gcccaacaag cgatcgatct caacttcatg atctcctttt cggggatcgt
     1021 cacctttcgc aaagccgaag acctgcgcga gatcgcgaaa caaattccac tcgagaatct
     1081 tttgatcgaa accgattgcc cgtttctcgc ccctgtgccg catcgcggaa aacgcaacga
     1141 acccgcttac gtcgtcgaaa tcgctcgctg catcgccgaa ctacgcggcc ttccgatcga
     1201 agaggtcgca caagcaacca cagaaaactt caaacgcttc ctgagaatcc cctgaaaaaa
     1261 ccatgatccg aaaatcactc gcactgatcg cgatattact tctcgcgcaa ctcgcattcg
     1321 cacaacaaac cacgcaaccc gtaacaacag tcttcctgat ccgccacgcc gaacgcgccg
     1381 acgaaccgcg ccaggatccg ccgctgaccg aaaaaggcgt cgcccgagct gaagcactgg
     1441 cgcgattgct cagcaacgcg ggcgtcaaag ccatctacac gtcgcagttt gcacgcacga
     1501 agctgactgc cgagccgctg gcaaaacagc tcggcgtcac gccaacggca ctctcgctga
     1561 aaatcagccc ctccaatccg cgcgcgatcg ctgacgaatc gacaaaagaa acagtcgaca
     1621 agatcctgag tcacgcaggc ggcagcgtgc tcgtcgtcgg tcacagcaac tcgatcccgg
     1681 acgtgatcaa aatgcttggc ggcgacgtcg ttcccacgat cgacgagaag aagtttgacg
     1741 atttctttgt tgtcacggtt tatgcaaacg gcaaagctca agtaacgcac ctgaagtatg
     1801 gcgccgaata aaacacgggt ttgtggtcca atttcgaagg attttgcgcg ttcaaagatg
     1861 tgtggaggtc ccgtctacga tgaaacgctt tatccttatg cttttgctct taatccctgt
     1921 ttcggctttt ggtcagcaca gccatgctcc ggcgaaagaa cccgcgccgg ttgcactcgc
     1981 tagcggtctg ggcgacatca atctcccggt caccaccacc aatgccgaag cgcagaagtt
     2041 ttttaaccag ggtctcgcct acatgtacgc cttcaatcac gaagaggcgg tgcgttcgtt
     2101 caaacaggcg acccaactcg acccgcaact cgcaatggct tactggggca tggcgctcgc
     2161 actcggttcg aattacaacg tgcaggcgga tggtccatcg ctactgagcg cttacaccaa
     2221 tctccagaaa gcaatcgagc tcgcgccgaa ggcttccgag cacgagcgcg cgtacatcaa
     2281 cgcgctctcg aagcgctatt cgtccgacct gaacgtcgac aagcagaagc tcgccgtcga
     2341 ttacaagaac gcgatgggtg agctcgcgaa acgttatccc gacgatctcg acgcggcgac
     2401 gctgtacgcc gaaagcatga tgaacctgcg gccgtggaaa ctctggagtc tcgacggcaa
     2461 gccggctgag gaaacgctcg agatcgttgc ggtgctcgaa aacgtgttgc gccgcaatcc
     2521 gaatcacacg ggcgcgaacc attactacat ccacgcggtt gaagcttcga acaacgccga
     2581 acgcgcgttg ccgagcgccg cgcgtcttgg aaagattgcg ccgaaggcgg gccacctggt
     2641 ccacatgccg tcgcacatct acatccgcac gggcgattat gctgaagcag cacagtcgaa
     2701 cgtcgacgcg atcgctgcgg atcgcgagta catcacgaag acaggcgcac agggcctgta
     2761 cacgatgatg tactacaacc acaacattca ttttctcgct tcggcaaacg cgttgaaggg
     2821 acgttatgcg gattcgatca aggccgcgcg cgagcttgaa gcgaacgtag cgccgcatct
     2881 caaagcgatg ccgatgctcg agatgttcag gccgtatccg atcatctcgc aggtgcggtt
     2941 caatcgttgg gacgacgtcc tgaaagaacc aaagcctgac gaagcgttaa agatcacgac
     3001 cggtttctgg cattacgcgc gtggcagtgc gtacgcgtcg atgaatcaac ccgcgaatgc
     3061 agaagctgag ttgaaagcgt tgcaggcagt cgcgaaaacg attccggctg acgcgccgat
     3121 gggcaacaac gtggcggtca acgtgatgaa ggtggctgat ttggcactcg cgggcaggat
     3181 cgctttcgcg cgtggtgaca agcaggcggc tttcaatctc ttgaaccagg ccgctgccgc
     3241 tgaagatgcg acgagttata acgaacctgc cgattgggac ttgccggttc gcgaagtgct
     3301 cggcggcatg ttgctcagca ctggtgattt tgcgggcgcg gagaaagcat ttcgtggcga
     3361 gctgaagcgg catccacgca atggacgcgc tttgttcggt cttgctgaga gtttaaaaca
     3421 gcagggcaac aagtcgtcgg cgcagatggt gtggcgcgag tttgaaaccg cgtggaaaga
     3481 cgcggacacg aagttaaccg tcgccgcgct cagcggaatt cagacgaaag ccgagaacgc
     3541 tgcacctgct
//
LOCUS       DASWTX010000573         2116 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_267186, whole genome shotgun sequence.
ACCESSION   DASWTX010000573 DASWTX010000000
VERSION     DASWTX010000573.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267186"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            549..>2116
                     /locus_tag="VGD38_08755"
     CDS             549..>2116
                     /locus_tag="VGD38_08755"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEY0728143.1"
                     /translation="MNRRNFLFVVTLIAFISTATWAQVPDKAKVVAGAERAIEKFTKA
                     YVAPAPGCAAAVSLNGEAVFEKAFGLADLEHNVPNTTQTIFESGSVAKQFTAAALVLL
                     QQDGKLSIDDPVRKYIPELPDYGSPLTIRHLLNHTAGLRDWGTVLSLTGVGRGDRVIS
                     QDLALDVITHQRALDFKPGAEYSYSNSGYNLAAIIVERVSKQKFPAFVEERLFKPLGM
                     KNSSWRDDYQRVVPGRAQAYSRPNNGPWRLNMPFMNVYGNGGMLTTVGDWMKWNAMLD
                     SHSLGAPLVNALETQGVLNDGRKIAYALGLEIGKYKGLKDVSHGGATAGYQTFLARYP
                     DNKVSVGVMCNGTSPSAGEIAATITDEIFGPFPETAKTEPPKVAEDELKKFVGVWRSE
                     KTHFPARFVIENGLSRWSGARLVPIGGGQFTAGPNKLKFTFDQDGKPVSAETVDSDGE
                     VSRFILEKEWTPAPADLAAIQGDWFSEEAGATCTIAVEGDKVFMKQRPARRLAMQPLY
                     KDHFLLPGYVVWFTR"
BASE COUNT          482 a          542 c          606 g          486 t
ORIGIN      
        1 agtactcacg tcgcgtacga taatcgtttt gcggccttta atcgccgttc cggtcttcga
       61 ttgacttagg ggtaatcttc gaaggtcaca gtatcgattg ggaaaccatt gagcaacgat
      121 aaacagatgt ttttgagaaa cgtcctctct cctccacagg atgcatcctg aagcgtttaa
      181 tgattcagcg atacttctga gcattacgga aacgccagat agctcatcct gattcaaagc
      241 ggtagagaca agactggcaa tgggagtagt ctcaaatcta agctcatcat acatattgta
      301 agtatcttca aaatccagct gttgaagtcg aggtttctgg ttttgaccct tcctaattct
      361 aaaggatgcg tgagtttctc ccaaatttgc tgccggccta aagcacggaa agtggaccac
      421 tggagtctta tgatctgctc aatatacctc aacaagcgct ttgggggtga cgtgtgcctg
      481 ccgactcagt attctacgcg agtgaaccgt gaggttggta tttgcgatca gtagaaggac
      541 aagcctccat gaacagaaga aacttcctat tcgttgttac ccttattgcg tttatttcaa
      601 ctgcaacttg ggcgcaggtt cccgacaagg cgaaggttgt cgcgggtgct gagcgggcga
      661 ttgagaagtt tacgaaggcg tacgtcgcgc cggccccggg ttgtgcggct gctgtgtcgc
      721 tgaatggtga ggccgtgttt gagaaggcgt tcggactcgc cgatctggag cacaacgttc
      781 cgaacacgac gcaaacgatt tttgaatcgg gctcggttgc gaaacagttc accgccgcgg
      841 cgctcgtgct gttgcaacag gatggcaagc tcagcatcga cgatccggtc aggaaataca
      901 ttcccgaact acccgattac ggttcgccgc tgacgatccg gcatctgttg aatcacactg
      961 ctggtctacg cgactggggc acggtgttga gtctcaccgg cgtgggccgc ggcgatcgcg
     1021 tcatctctca ggatctcgcg ctcgacgtta tcactcatca gcgtgcactc gacttcaagc
     1081 ccggcgccga gtactcctat tcaaacagtg gctacaacct tgcggccata atcgtcgagc
     1141 gtgtttcgaa acagaagttt cccgcgttcg tagaggagcg tttattcaaa ccactcggca
     1201 tgaagaacag ttcgtggaga gacgactacc agcgcgttgt cccgggccgc gcgcaggcgt
     1261 attcgcgtcc caacaacgga ccgtggcggc tcaacatgcc gttcatgaat gtctatggaa
     1321 acggcggcat gcttacgacc gtcggcgact ggatgaagtg gaacgcgatg ctcgattcgc
     1381 attcgctggg tgcgccgctt gtcaatgcac tcgaaactca aggcgtgctg aatgacggcc
     1441 gcaagatcgc gtacgcactc gggctggaga tcggaaagta caagggactg aaagacgttt
     1501 cgcacggcgg cgcgacggcg ggttatcaga cttttctggc gcgttatcct gacaacaagg
     1561 tatcagtcgg cgtgatgtgt aacggcactt cacccagcgc cggagaaatc gccgcaacca
     1621 taacggatga aatcttcggg ccgtttcccg aaactgccaa aaccgaacca cctaaggtcg
     1681 ccgaagacga gctgaagaaa ttcgtcggtg tctggcgaag tgagaagaca cattttcctg
     1741 cacggtttgt gatcgaaaac ggcctgtcgc gatggagcgg cgcgcggctt gtgccaatag
     1801 gcggcggtca gttcaccgcc ggcccgaaca agttgaagtt tacgtttgat caggacggca
     1861 agcctgtctc tgctgagact gtcgattccg atggtgaagt cagccgcttc attctcgaga
     1921 aggagtggac accggcgcca gcggaccttg cggcaattca gggagattgg tttagcgaag
     1981 aggccggagc gacatgcacc atcgccgttg agggtgacaa ggtgtttatg aaacagcgtc
     2041 cggcgaggcg tttggcgatg cagccgcttt ataaggatca tttcctgctg ccgggatacg
     2101 ttgtctggtt cacgcg
//
LOCUS       DASWTX010000574         5082 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_116907, whole genome shotgun sequence.
ACCESSION   DASWTX010000574 DASWTX010000000
VERSION     DASWTX010000574.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5082
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116907"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..180)
                     /locus_tag="VGD38_08760"
     CDS             complement(<1..180)
                     /locus_tag="VGD38_08760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728144.1"
                     /translation="MRTSLLKVLVFIALILCVCDVRGQETVETIRIDSDLVDLKVSVL
                     GLAPNAPTPLLEQRDF"
     gene            complement(170..1507)
                     /locus_tag="VGD38_08765"
     CDS             complement(170..1507)
                     /locus_tag="VGD38_08765"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0728145.1"
                     /translation="MVSKRKHVLWGLVFFVGFLFPATYLAVQDSDEIRIDVPADAQIT
                     VRNDFGNVSVEVWNNSYVAVSAAIEGSAKFSRSPIVIDNRGKMLSISVVRRPIDPAVG
                     IHLKLKVPVSANVTGNNIQPIKPPELIGPGSEKPTAGTPANEPENAEISEGDVIRVDS
                     QLVTLNISVIDRGTNRGLMGLTQSDFRLFEDGQEQRIVQFESSSAPFDMVLLIDLSGS
                     TREVVKLIRAAAMRFVEAARPADRIAVITFAGETKIISELTADRELLRQRIETIDTAR
                     GDTKLYDATNFAMSEVLKQSKNSRRTAIVVMSDGLDGTIPGISGQQGSVKFSYPETLR
                     NIQEFDGVLYTLWLNTEYEAMSPLDTQPEAFDMGHNRMKEMADAGGGIFFPVERLTDL
                     AGAYEQVVADLGTVYSLAYKPANSARDGHWRAIRIGVNRPNAVPRGKRGYYAN"
     gene            complement(1548..4040)
                     /locus_tag="VGD38_08770"
     CDS             complement(1548..4040)
                     /locus_tag="VGD38_08770"
                     /inference="COORDINATES: protein motif:HMM:NF044287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728146.1"
                     /translation="MAEEFQPYIGPRPFEREDADKGRFFGRHREARELLSRVIAHSAV
                     LLYSQSGAGKTSLINAKLVPMLEEKRFEVLKPGRVRGLRPPDIQREAIRNIYVFNAIR
                     SWDDNNTDPRLLADLSLTEFLEKRKRRTNGNGETAPYIAIFDQFEELFTFYPERWENR
                     QDFFEQIGDALEEDRSMRVVFAMREDYIAALDPYLGDLPEKLRTRYRLERLPEDQALR
                     AVTGPLENTQYSFAPGVAEALVHDLLKVPIETPSGVVKASSEYVEPVQLQVVCQTLWE
                     NCQNSWRTLQPSDPRVITSKDLESFGDVDAALSSFYENALKRVVQSTGINEGRLRAWF
                     ENVLITPTGTRGTVFRGVEDTGGVPTKTVDELVNQHLVISEIRGGAKWVELTHDRLID
                     PIKASNEKWRLQYSGGEETRKLLEERARKWMQSGRDDKLLLDEGELVQAKRWIDSPSA
                     TDLGYSLSVLALIQASRAAIDEAARVREQALFQEQQRRAEAEQEKVEAQRRYIHAQAK
                     ATRRLRRFAAALTLMFLFAIGFAALAGYQRKQALASATQARQNFDDAKRARVYAEEQT
                     ASAVRAQQDATHKHQELLAAQETIKQESAKALQEARKARASAKRERIARLKAKESFEQ
                     IAVLSYLLQTLSYSELRAGAYQREGSVEEAASIYKNLVDAYDDPAFMTDQRRVLKELV
                     GIYRQNGNTAEEQQYRSRLENLPTPIGEAMEQLIKERGISAAVEQYKELFKARSDKYI
                     FEENELNELGYTFLRKQRYNEAIEIFKLNVSSYPDAYNPYDSLAEAYMKSGDSQLAIR
                     YYEKSLQLNPKNANAVEKLKQLKSDTAASERP"
     gene            complement(4051..4974)
                     /locus_tag="VGD38_08775"
     CDS             complement(4051..4974)
                     /locus_tag="VGD38_08775"
                     /inference="COORDINATES: protein motif:HMM:NF024685.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIR2 family protein"
                     /protein_id="HEY0728147.1"
                     /translation="MHESLEEPYWDLLLERIKDGECTPFLGAGACAGVLPLGAEIAQQ
                     WAEKERYPLDDCTDLARVAQFLAVQYDAIRPKRDLIRQFSGVGPPDFSNPYEPHRVLA
                     ELPLPVYITTNYDNFLYQALSRAEYAPGHKKTPIREVCRWNKYVQRKQKSQTTLLKPA
                     SYARITEKTPVIFHLHGHTDLAESMVLTEDDYLDFLVNVSKDEDLLPPRIQEAMAGTS
                     LLFLGYRLSDWNFRVLFRSALGYLENSIARAHISVQLVPLREGHSLEQKARAQAYLQR
                     YFGNSKIQVYWGTAEAFAKELSDRWRRYSGQ"
BASE COUNT         1029 a         1443 c         1382 g         1228 t
ORIGIN      
        1 aaagtccctc tgttcgagca acggcgtggg tgcgttcggc gcaagaccaa gcacactgac
       61 tttcagatcg accaggtctg aatcgatgcg aattgtctcg acagtttcct ggccacgaac
      121 atcgcacaca caaagaatca gggcgatgaa aaccagaact ttgagaagac tagttcgcat
      181 agtagccacg cttgccgcga ggcacagcgt ttggtcgatt aactccgatg cgtatcgcgc
      241 gccagtgtcc gtcacgcgcg ctgtttgcgg gtttgtaagc gagactatat accgttccga
      301 ggtccgcgac cacctgttcg taagctccgg cgagatctgt caggcgctcg acgggaaaaa
      361 agatcccgcc gccggcgtcc gccatctctt tcattcgatt gtgtcccatg tcgaatgctt
      421 cgggctgcgt atcgagcggg ctcatcgctt cgtactcggt gttgagccac aacgtataga
      481 gaacaccgtc gaactcctgg atgttgcgca gtgtctccgg gtaagaaaat ttcaccgaac
      541 cctgttggcc gctgatgccg gggatcgttc cgtcgaggcc gtcgctcatc accacgatcg
      601 ccgtgcggcg cgagttcttc gactgcttca acacttcgct catcgcgaag tttgtcgcgt
      661 cgtagagttt tgtatcgccg cgcgcggtgt cgatggtttc gattcgttgc cgcagcagtt
      721 cgcggtcggc ggtgagttcg gaaatgatct ttgtttcacc ggcgaacgtg atcacggcga
      781 ttcgatctgc gggacgcgct gcttcgacga agcgcatggc ggctgcgcga atcagtttaa
      841 cgacctcgcg ggtagagcct gacaagtcaa tcagcagcac catgtcgaac ggcgcggagg
      901 aggattcaaa ctgcacgatg cgctgttcct gaccgtcttc gaacaggcgg aagtctgact
      961 gggttaaacc catcagcccg cgattcgtgc cgcggtcgat cacgctgatg ttgagtgtga
     1021 cgagttgcga gtcgacgcga atgacatcgc cttcgctgat ctcggcgttt tcgggttcgt
     1081 tcgcgggtgt tccggctgtg ggtttctcgc tgccgggtcc gatcagttcg ggtggcttga
     1141 taggttggat gttgttaccc gtaacattcg cacttaccgg aactttgagc tttagatgaa
     1201 tgccaacagc gggatcgatt gggcgccgca ccaccgagat cgataacatc ttgccgcgat
     1261 tgtcgataac gattggtgag cggctgaact tggcggagcc ttcgattgcg gctgaaactg
     1321 cgacgtagct gttgttccag acctcgaccg agacgttgcc gaagtcgttt cgcaccgtga
     1381 tctgcgcgtc ggcagggacg tcgatgcgaa tctcatcgga gtcttgaaca gctaagtaag
     1441 tggccgggaa gagaaaacca acaaagaaga caagccccca caaaacgtgt ttacgttttg
     1501 agaccatgcc aagaatctac tcgacccgag cggtgatggc aaagcgctta gggacgctca
     1561 gacgcagccg tatcgctttt cagttgtttc agtttttcaa ccgcattggc atttttcggg
     1621 ttcagttgga gtgacttctc gtagtaacgg atggcgagtt gcgagtcgcc cgacttcata
     1681 tacgcttcgg caaggctgtc gtatgggttg taagcatcgg ggtaactgga cacgttcaat
     1741 ttgaatatct caattgcctc gttgtacctc tgcttccgca aaaacgtata cccaagctcg
     1801 ttcaactcgt tttcctcaaa gatgtacttg tctgaacgag ccttgaacaa ctctttgtac
     1861 tgctcgactg ccgcgctaat gccacgctct ttaatcaact gctccattgc ttcaccgata
     1921 ggcgtgggaa gattctcgag ccggctcctg tactgttgtt cctcggccgt gttgccgttt
     1981 tggcgataga tcccgacaag ttcttttaga acgcgtcttt ggtcagtcat gaacgcggga
     2041 tcgtcataag cgtcgacaag gttcttatag atcgatgcgg cctcttcaac acttccttct
     2101 ctttgataag caccagctcg caattcagag taactgaggg tttgcagtaa gtatgagagc
     2161 accgcgattt gctcaaagct ttcctttgcc ttgagccggg ctatacgttc ccgttttgca
     2221 gacgctctgg ctttgcgtgc ctcttgcagg gcttttgcac tttcctgttt gatcgtttcc
     2281 tgcgcggcaa gcagttcctg atgtttgtga gtcgcgtctt gctgcgcacg cacggcactg
     2341 gcagtttgtt cttccgcgta caccctcgcc cgcttcgcgt cgtcgaagtt ttgccgagcc
     2401 tgagtggcgc tggcgagagc ttgtttcctt tgatagccgg ccaaagctgc gaaaccaatt
     2461 gcgaacaaaa acatcagcgt cagagctgcc gcaaagcgac gcaaccgccg cgtcgccttc
     2521 gcttgcgcgt gaatgtaacg ccgttgcgct tctactttct cctgctcagc ttccgcacgc
     2581 cgctgctgct cctgaaacaa agcctgttct cgaactcgcg cggcttcgtc aatcgccgca
     2641 cggctcgcct ggatcaacgc caaaaccgaa aggctgtagc cgaggtcggt agcgctcgga
     2701 ctgtcgatcc atctctttgc ctggaccaac tcaccttcat ccagcaacaa cttatcgtcc
     2761 cggccgctct gcatccattt tcgggcgcgt tcctccaaca gcttgcgtgt ctcttcgccg
     2821 ccggaatact gcagccgcca cttctcattc gaagccttaa tcggatcgat cagccggtcg
     2881 tgtgttaact caacccactt agcgccacct cgtatctcgc tgataacgag gtgctggtta
     2941 acaagctcat caaccgtttt tgtcggcaca ccgcccgtat cctctacacc acgaaacaca
     3001 gtcccacgcg tgccggtcgg cgtaatcaac acattctcaa accacgcacg cagccgtcct
     3061 tcattgattc ccgtcgactg aaccactcgc ttcagagcgt tctcgtaaaa cgacgacaac
     3121 gcggcatcga cgtcgccgaa agactccagg tctttggaag taatcactcg cggatcggaa
     3181 ggctgcaacg ttcgccacga gttctggcag ttctcccaca acgtttggca aacaacctgt
     3241 agctgcacgg gttcgacgta ctcgctgctg gccttcacaa cgcccgacgg tgtttcgatc
     3301 ggaaccttca acagatcgtg gaccagcgct tcagcgacac ccggcgcgaa agagtattgc
     3361 gtgttctcga gtggaccagt aaccgcgcgc agtgcctggt cttccggcaa acgttccagc
     3421 cggtagcgcg tgcgcagctt ttcaggcaaa tcgcccagat acggatcgag cgccgcgatg
     3481 tagtcttcgc gcatggcaaa gaccactctc atggagcgat cttcttcaag ggcgtcaccg
     3541 atttgttcga agaagtcctg ccggttttcc caccgctccg gatagaaagt gaagagctct
     3601 tcaaactgat cgaagatcgc gatgtaagga gcagtctcgc cgtttccgtt tgttcgtcgt
     3661 tttcttttct cgagaaattc tgtgagcgag agatcggcta acaatctcgg atcggtgttg
     3721 ttgtcgtccc agctgcgaat ggcattgaaa acatagatat tgcggatcgc ctcgcgttga
     3781 atatccggcg gacgcagacc acgcacgcgt ccgggcttca gcacctcaaa ccgcttctct
     3841 tccaacatag ggaccagctt cgcgttgata agcgacgtct tgcccgcgcc agattgtgaa
     3901 taaagcagca ccgccgaatg cgcgattacg cgtgagagaa gttcgcgagc ctcgcgatgt
     3961 cttccaaaga aacgtccttt gtcggcatct tcgcgctcaa acggccgtgg gccaatgtat
     4021 ggttggaact cttcagccat cgtcctgctc ctactgtccc gaatatcttc gccagcgatc
     4081 gctcagctct ttcgcaaacg cttccgccgt tccccagtag acctggattt tcgagttgcc
     4141 gaagtagcgt tgcaggtagg cttgagcccg ggctttttgc tccagcgagt ggccctcgcg
     4201 cagcggaacg agttggaccg agatgtgcgc gcgggcaatg ctgttttcca gatatccgag
     4261 cgcgctgcga aacagaaccc ggaagttcca atcgctaagc cggtatccga gaaacagcag
     4321 agaggtgccc gccatcgctt cctgaattct gggaggaagc agatcctcgt ctttcgaaac
     4381 gttcaccagg aaatcgagat agtcgtcttc ggtgagcacc atcgactcag ccaggtctgt
     4441 gtgtccgtgc aggtgaaaga tgaccggcgt cttttccgtg atccgtgcgt acgacgccgg
     4501 cttcagaagc gtcgtctggc tcttttgttt ccgctgaacg tacttgttcc atctgcaaac
     4561 ttcgcgaatc ggcgtcttct tgtgaccagg tgcgtattcg gcccggctca gcgcctgata
     4621 gaggaagttg tcgtaattgg ttgtgatgta gacaggaagc ggaagttctg cgaggacgcg
     4681 atgcggctcg tagggattgc tgaagtctgg tggtccgacg ccgctgaact gtctgattag
     4741 gtcgcgtttg ggacggatgg catcgtattg aacggcgaga aactgggcga ctctcgccag
     4801 atcagtacaa tcgtcgagcg ggtaacgttc cttctccgcc cactgttgag cgatttcggc
     4861 tcccagggga agcacgcccg cgcaagctcc tgcgccaaga aagggcgtgc attccccatc
     4921 cttgattcgc tcgagcagca aatcccaata gggttcttcg agactctcgt gcatttttcg
     4981 cctccacaac agtgatggcg aaatccgcac aattcgtttc gcggggtttt tagccgcagg
     5041 ctcagggttc gatcaaatcg agcatcgagg tcgcgtcgcg cg
//
LOCUS       DASWTX010000575         2207 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_201678, whole genome shotgun sequence.
ACCESSION   DASWTX010000575 DASWTX010000000
VERSION     DASWTX010000575.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201678"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1391
                     /locus_tag="VGD38_08780"
     CDS             <1..1391
                     /locus_tag="VGD38_08780"
                     /inference="COORDINATES: protein motif:HMM:NF014312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome D1 domain-containing protein"
                     /protein_id="HEY0728148.1"
                     /translation="NQVAVVDTSTWKVVANIDTGVKPTRVRLQPDQRYLWVGNDEGAS
                     SGVTVIDTATLKVVGHVTTGKGHHEFEFSSDNRFAFVTNEQDGTLSVIDIQKLAKVKD
                     LKTGTPATSIAFSTLGNALYLVNEIDGSITVIDTRSQQIATRIQTKPGIRNVRFAPGS
                     RWGFVPNPKENVVYVFDASTNRLAHTIRVEHGPDQVTFTDAFAYLRPSGSTEVSMVRL
                     STLTSQPDVATFPAGQIAPAQARGVASIADIMVPAPEGNSVLLANPADGVIYYYSEGM
                     AAPMGSFQNYRRQPRAVMVVDRSLREVTAGVYTTTTKLPKSGVYDVAFLLDSPRITHC
                     FNAEAKPNPDVPREKRVALRIEYLNKEKQLRVAENFKLRFKLLDNATSRAKTDLKDVR
                     VLTMLSSGVWQKRDFAQPVGDGVYELDLKVPQTGLYFVFVESRSQGVSFRQLPSLTLQ
                     TAAATAAVKEEK"
     gene            1395..2141
                     /locus_tag="VGD38_08785"
     CDS             1395..2141
                     /locus_tag="VGD38_08785"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEY0728149.1"
                     /translation="MSLVTSTRLITIGLLFICLFIPAPAYAQKQPQQVYSCPMHPEVK
                     SKKKGRCPKCGMDLRLVKRDEAAEAEAPVAEPEIGAVQKMNIPDVELLDQDGRKIHFY
                     TDLIKGQTVAINFIFTTCTTICPPLGATFARVQRELGDKTGRDVRFISISVDPATDTP
                     ERLKAWGEKFHAGAGWTFVTGNKPQVDELLRALGASSARREDHSPTILIGNDAQGTWT
                     RTYGLAKSSQLVEMINDAIAGKTATAEVSN"
BASE COUNT          508 a          655 c          622 g          422 t
ORIGIN      
        1 ctaaccaggt tgcggttgtc gatacgagca cgtggaaagt cgtcgcgaat atcgataccg
       61 gcgtgaagcc cacgcgcgta cggttgcagc ctgaccaacg ttatttgtgg gtcggtaatg
      121 atgaaggcgc gtccagcggc gtgactgtga tcgacacagc gacgttgaaa gtggtgggcc
      181 atgtgacgac gggcaagggc catcacgagt ttgagttcag tagcgacaac cgcttcgcgt
      241 tcgtcaccaa cgaacaggac gggacgcttt ctgtaatcga cattcaaaag ctcgcgaagg
      301 tcaaagatct caagacgggc actcccgcga cgtccatcgc tttctcgaca ctcggcaatg
      361 cgctctacct tgtaaacgaa atcgacggaa gcatcacggt tatcgatacg cgcagccagc
      421 agatcgccac gcgcattcaa accaagccgg gaattagaaa cgtgcgcttc gcgccgggta
      481 gccgctgggg tttcgtgcca aatccgaaag agaacgtcgt ttacgttttc gacgcttcga
      541 cgaatcgttt ggcgcacacg atcagggtcg agcatggccc cgatcaggtc acgttcacag
      601 acgcgtttgc ttatctgcgt ccgagtggtt cgactgaagt gagcatggtt cgtctcagca
      661 cgttgacgag ccaacccgat gtcgcgacat tccccgccgg ccagattgcg cccgcgcagg
      721 cgcgaggcgt ggcgagcatc gccgacatca tggtgccggc gccggaaggg aattcggtgc
      781 tgctcgcgaa cccggcggat ggcgtcatct attactactc ggaaggcatg gccgcaccga
      841 tgggtagttt tcaaaactac cgccgtcagc cgcgcgctgt gatggtcgtc gatcgatcgc
      901 tgcgtgaagt caccgcgggt gtttacacaa ccacgacgaa gttgccgaag agtggcgtct
      961 acgacgtcgc gttcctgctc gactcgcctc gcatcacgca ctgtttcaac gccgaggcga
     1021 aaccgaatcc ggatgtcccg cgcgagaaac gcgtcgcact ccgaatcgag tacctgaaca
     1081 aagaaaagca actccgcgtc gccgagaatt tcaaactgcg cttcaagctt ctcgacaacg
     1141 caacgtcacg agcgaagacc gatctgaagg acgtgcgcgt gttgacgatg ttgtcctccg
     1201 gcgtctggca gaaacgcgac ttcgcacagc cagtcggcga cggcgtgtac gagctcgacc
     1261 taaaagtgcc gcaaacgggc ctgtatttcg tgttcgtcga aagccgctcg cagggcgtga
     1321 gcttcaggca gctgccatcg ttgacattgc agacggcagc agccaccgcg gcagtaaagg
     1381 aggaaaagta atccatgagt ctcgtaacta gcacgcgcct catcacgatc ggcttgttat
     1441 ttatctgcct ttttatcccc gcccctgctt acgcgcaaaa gcagccacaa caagtctact
     1501 cgtgccccat gcacccggaa gtgaaatcga agaagaaagg ccgctgccca aagtgcggca
     1561 tggatctacg tctcgttaag cgtgacgaag ctgccgaagc cgaagcgcct gttgctgagc
     1621 ccgaaatcgg cgctgtccag aaaatgaata tccccgacgt cgaactactc gatcaggacg
     1681 ggcgcaagat tcacttctac acggatctga tcaaaggcca aacggtcgcg atcaatttca
     1741 tctttaccac ctgcacgacg atctgcccgc cgctcggcgc aacgttcgcg cgcgtgcaaa
     1801 gagaactcgg cgacaaaacc ggccgcgacg tgcgctttat ttcgattagt gttgacccgg
     1861 cgacggatac tcccgaacgt ctcaaagctt ggggcgagaa gtttcacgcg ggcgcgggtt
     1921 ggacctttgt caccggaaac aaaccgcaag tcgacgaact gctgcgcgcg ctcggcgcgt
     1981 cttccgcgcg ccgcgaagat cattcgccca ctatactcat cggcaacgac gcgcaaggca
     2041 cgtggacgcg cacttacgga ttggccaaaa gcagccagct cgtcgagatg atcaacgacg
     2101 ccatcgcagg caagaccgct accgcggagg tatcaaacta atgaaacgtc aaatcttctt
     2161 tttgctcgta ctgacgctcg ccgttttcac gcagacgccg gcccaga
//
LOCUS       DASWTX010000576         2380 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_313477, whole genome shotgun sequence.
ACCESSION   DASWTX010000576 DASWTX010000000
VERSION     DASWTX010000576.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2380)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2380)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2380
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313477"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..531
                     /locus_tag="VGD38_08790"
     CDS             <1..531
                     /locus_tag="VGD38_08790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728150.1"
                     /translation="MRDGDLDIYSMDANGKNVKRLTNELGYDGGPFWSYDGKQIVYRA
                     HHPKTEEQKADYTGLLKQNLIRPNTLEIWVMNADGSNKRQVTSNGKANFGPYFFPDGK
                     RIIFSSNMDDPRGRNFDLYMINVDGTGLERITFYESFDGFPMFSPDGKKIVFASNRNA
                     KVTGETNVFIADWVGN"
     gene            538..2280
                     /locus_tag="VGD38_08795"
     CDS             538..2280
                     /locus_tag="VGD38_08795"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY0728151.1"
                     /translation="MIKSNFFKVPLLLIFAVGVAAQQPERIQTDVKYLASDALEGRRT
                     GTKGATEAARYMAKEFSRLKLKPLSTGYLQKFPYVAGVTLGKTNTLSFGTDKLEAGVD
                     WVPLGFSSSARVSGGLVFVGYGITASELNHNDYATANATGKIAIALQSTPDGVTPHSR
                     FLRYEGVRWKAVAAKNAGAKALIVIARESNFKDDRLAKLAYDNMAGDAGLPVIVVSRE
                     GADRLFKASGVSLAQFETSPATRALTGEINLTTDIVRNEVPAYNVIGMLEGSDPQLKN
                     EVIIIGAHYDHLGRGGEGSGSLAPSSGDIHYGADDNASGTAGVLELARLFTAQNPKPK
                     RTIIFMGFGGEEEGLLGSNYYVNHPLLPLANTVAMINMDMIGRMKDRRLVVGGVGTAK
                     EWRDIVAADTEKAFQLTLNEDGFGPSDHSSFYAKQIPVLFFWTGTHNDYHKPSDTFEK
                     INYDDQVLILKMVARIVNQLDVADKRLTYATAKSDAAPRTGGFRVYLGTIPNYADSND
                     GLLIDGVRDDSPAAKAGIKAGDKIVKIGTHEIKNVYDYTAALGEMKAGEEYVVEVMRG
                     TERLTLKLKPEARR"
BASE COUNT          577 a          682 c          665 g          456 t
ORIGIN      
        1 atgcgcgacg gcgacctcga catctactcg atggacgcca acggcaagaa cgtgaagcgg
       61 ctgacgaacg aactcggtta cgacggtggg ccgttctggt cgtacgacgg caagcagatc
      121 gtctatcgcg cgcatcatcc gaaaacggaa gaacagaaag ccgactacac gggcctgttg
      181 aaacagaacc tgattcgtcc aaacacgctc gagatttggg tgatgaacgc ggatggttcg
      241 aacaagcggc aggtcacgag caacggcaaa gcgaactttg gcccgtactt tttcccggac
      301 ggcaagcgga tcatcttctc gtcgaacatg gacgatccgc gcgggcgcaa tttcgatttg
      361 tacatgatca atgttgacgg gactggatta gagcggatca cgttctatga gagttttgac
      421 ggctttccga tgttttcgcc ggacgggaag aagatcgtgt tcgcgtctaa ccgcaacgcg
      481 aaagtaaccg gggaaaccaa tgtttttatc gccgactggg tggggaatta agaaccgatg
      541 attaaatcca attttttcaa agttcctctg ctgctgatct tcgcggtggg cgtcgcagcc
      601 caacagccgg agcgcattca aaccgacgtc aagtacctcg cgtccgacgc gctcgaagga
      661 cgccgcaccg gcacgaaagg cgccaccgaa gctgcgcgtt acatggcgaa ggagttctct
      721 cgtctaaagc tgaagccgct ttcaaccggt tacctgcaaa agtttcctta cgtcgcgggc
      781 gtaacgctgg gaaaaacaaa cacgctgagc ttcggcacgg acaaactgga agcgggcgtt
      841 gactgggttc ccctcggttt ttcgtcttca gcgagagtca gcggcggtct cgtctttgtt
      901 ggttacggaa tcacagcgtc ggagctgaac cacaacgact acgccaccgc gaacgccacc
      961 ggcaagatcg cgatcgcctt acaaagcacg cccgacggcg tgacgccgca cagccgattc
     1021 cttcgttacg aaggcgtgcg ctggaaagcg gtcgcggcga agaacgccgg tgctaaggct
     1081 ttgatcgtga tcgctcgcga aagtaacttc aaagacgatc ggttagcaaa actggcttac
     1141 gacaacatgg cgggcgacgc cggactgccc gtgatcgtgg tttcacgtga gggcgcggac
     1201 cgtttgttca aagcgtctgg tgtttcgctt gcacagttcg aaacgtcgcc agccacccgc
     1261 gccttaaccg gcgaaatcaa tctgacgaca gacatcgttc gcaacgaggt tcccgcgtac
     1321 aacgtcatcg gcatgctcga aggctccgat ccgcagctca aaaacgaagt cataatcatc
     1381 ggcgcgcact acgatcatct cggacgcggc ggggagggca gcggcagtct cgcgcccagt
     1441 tccggcgaca ttcattacgg cgctgacgac aacgcttccg gcaccgccgg cgtactcgag
     1501 cttgcgcgtc tcttcaccgc acaaaatcca aaacccaagc gcacgatcat cttcatgggc
     1561 ttcggcggtg aagaggaagg actgctcggc tcaaactact acgtcaatca cccgttgctt
     1621 ccgctcgcga acacggtcgc gatgatcaac atggacatga ttggccgcat gaaagatcgc
     1681 cgcctggtag tcggcggtgt cggcaccgcg aaagaatggc gcgacattgt ggccgccgat
     1741 accgagaagg cgtttcaact cacgttgaac gaagacggct ttggtccaag cgatcactcg
     1801 tcgttctacg ccaaacaaat tccggtgctc ttcttctgga ccggcacgca caacgactat
     1861 cacaaaccgt cagacacgtt tgaaaagatc aactacgacg atcaagtcct catcctgaaa
     1921 atggtcgcgc gcatcgtcaa tcaactcgac gtggccgaca aacgtctaac ttacgccact
     1981 gccaaatccg acgctgcgcc acgcactggc ggcttccgcg tctatctcgg cacgattccc
     2041 aactacgccg acagcaacga cggcctgtta atcgacggcg tccgcgatga ttcacccgct
     2101 gcaaaggccg gtatcaaagc cggagacaag atcgtgaaga tcggcacgca cgagatcaaa
     2161 aacgtttacg actacacggc tgcgcttggc gagatgaaag ccggagaaga gtatgtggtt
     2221 gaggttatgc gcgggactga aaggttaact ctaaaactca aaccggaagc aagaagataa
     2281 aacttaaaag gggcggccac tgagtgccgc ccctgagggg ttcttaccaa cgcggttcgc
     2341 gttcgtaacg atcgttgtcg cggtcacggc cgccgccgta
//
LOCUS       DASWTX010000577         3968 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_223468, whole genome shotgun sequence.
ACCESSION   DASWTX010000577 DASWTX010000000
VERSION     DASWTX010000577.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3968
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223468"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(70..846)
                     /locus_tag="VGD38_08800"
     CDS             complement(70..846)
                     /locus_tag="VGD38_08800"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY0728152.1"
                     /translation="MRYPTLVLTLLFLVSLSPAASFQNPQQTPAKPLYAPTGNEATLT
                     GTITANGEIPKAQIVDLTADPLCELPNGEKYETDFLLTNNQRLLNVFVYVKGGETLNA
                     YRFETPKSEVVLERKNCRFSPHVLGIRVGQSLSIVNNDRTQHNTHPVPKINQEWNASQ
                     AAGTSFSQSFKRPELFIPVKCNQHPWEKAYLSVMAHPFFAVSDAFGNYEIRGLPPGRY
                     KLVAWHEAMGEQETEITVAAGENRRLDFTFESLKVGSRLE"
     gene            complement(851..2221)
                     /gene="argH"
                     /locus_tag="VGD38_08805"
     CDS             complement(851..2221)
                     /gene="argH"
                     /locus_tag="VGD38_08805"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEY0728153.1"
                     /translation="MSEKNLWGGRFSGKADPGFAEFNNSFRFDRRLFEVDVRASIAYC
                     AALERAGVVSPADASVITRGLEAIAAQGVDAGSNAEDVHSFVEARLVELVGDVGRKLH
                     TGRSRNDQVATDFRLWIRAALYDLDGLVRGVQTALVEFAEGNSEVVIAGYTHLQRAQP
                     VLLAHWCLAYFEMLARDRERLAETRGRVNVLPLGSAALAGTSFPIDREELAKELGFEA
                     VSRNSLDAISDRDFCVEFLSDCSLVMVHLSRLAEDIILYASSEFGFFSLGDAIATGSS
                     LMPQKKNPDSMELVRGKAGRVFGDLIGTLTMLKGLPLAYNKDMQDDKEAVFDAFDTVS
                     SCLQVTTTVLHNITVNKDRALAAASSGYMNATELADYLVRKGMPFRNAHELVGKIVVR
                     AIDLGKELDQLSVAEFREFSSLFAEDVHIALSLEQTLRSKSQVGGTSPELLTAALAQA
                     RKTLKE"
     gene            2285..2710
                     /locus_tag="VGD38_08810"
     CDS             2285..2710
                     /locus_tag="VGD38_08810"
                     /inference="COORDINATES: protein motif:HMM:NF013483.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728154.1"
                     /translation="MNKRDRQQMILGLIQARPIGTQEDLCALLERAGVTATQSSVSRD
                     LEELGIVKQHGYYTLPRANGASARGLLSLDQAGDSLVVARTMPGLASAVAVEIDAAAL
                     PEVVGTIAGEDTIFIAVRDAKSQRPTIKQVWELFGHGGA"
     gene            2766..3962
                     /locus_tag="VGD38_08815"
     CDS             2766..3962
                     /locus_tag="VGD38_08815"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: protein motif:HMM:NF001770.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEY0728155.1"
                     /translation="MKAKVSKIVLAYSGGLDTSVMLRWLKDYYDCEVVCYCADVGQGA
                     ELSGLEEKAHATGASKLYVEDLREEFVRDYVWTAVKANAVYEGVYLMGTSLARPVIAK
                     RQIEIARQEGADAVAHGATGKGNDQVRFELTYYALQPDIKVIAPWREWEFKGRADLMA
                     YAKQHEIPVTATAEKPYSTDANLMHISYEGGILEDPWAEPPENIFQLTRAPENARAEA
                     QYVEISFEKGEPVAIDGRKLDPVTLLETLNPIGGEHGIGRVDLVENRFVGMKSRGVYE
                     TPGVTILHAAHRALESITLDREVMHLRDSVGVKFAESIYYGFWFAPEFKLLRKTIEDT
                     QTRVTGDVRLKLFRGNAIVVGRRSPHSLYDERIATFEADTVYNQRDAEGFIKLNALRL
                     RLGGDR"
BASE COUNT          890 a         1134 c         1135 g          809 t
ORIGIN      
        1 cggtcgtgct gaaactccag gacgcgagtt tcatttatca ggagaatatc cagcccgcaa
       61 cttccgctgc tactccaacc gcgagccaac cttcagagac tcaaaagtaa aatcaagcct
      121 tcggttctcg ccggcagcta ccgtaatctc ggtctcctgt tctcccattg cttcgtgcca
      181 ggcaacgagt ttgtacctgc ccggcggcaa accgcgaatt tcataattgc caaacgcatc
      241 actcaccgcg aagaatggat gggccatcac gctcagatac gctttctccc acggatgctg
      301 attgcatttg acgggtatga acaattcagg tcgcttaaag ctttgcgaaa aggatgtacc
      361 cgccgcctgt gaagcgttcc actcctggtt tattttcgga accgggtgcg tgttgtgctg
      421 ggtccgatcg ttgttgacta tcgatagcga ttgcccgact cggataccga gcacgtgagg
      481 cgagaaacgg cagttcttgc gctccaacac tacctctgat ttgggagttt cgaaccggta
      541 ggcattgagc gtctcaccgc ccttcacgta gacgaaaacg ttcagcagcc gctgattgtt
      601 agttaaaaga aagtcggttt catacttctc gccattgggt agttcacaaa ggggatctgc
      661 cgtcaggtcc acaatttgcg ctttgggaat ctcgccattc gccgtgatcg tgccggtcaa
      721 agtcgcttca ttgcccgtgg gcgcgtagag cggcttggct ggagtttgct gtgggttttg
      781 gaaagaagcg gccggagaga gagaaacgag gaacagaagg gtcaggacca acgtcgggta
      841 tctcatagtt ttactccttt aaggttttgc gtgcctgggc cagcgcagcc gtgagcaatt
      901 ccggtgaagt gccgccaact tgcgactttg accttaacgt ttgctcgaga gagagagcaa
      961 tgtggacatc ctcagcgaag agcgaggaga actcacgaaa ctcggctaca gataattgat
     1021 ccaattcctt cccgagatca atagcgcgca cgacgatctt gccgaccagc tcatgcgcat
     1081 ttctgaaagg catgcctttg cggacaaggt aatccgcgag ctcggtggca ttcatgtagc
     1141 cgctcgacgc ggccgcgagg gcgcgatctt tgttgacggt gatgttgtgc aggacggtgg
     1201 tcgtcacctg caaacacgag ctgacagtat cgaacgcgtc aaacaccgct tctttgtcgt
     1261 cctgcatgtc tttgttgtaa gcgagcggca gacccttgag catcgtcagc gtgccgatga
     1321 gatcgccgaa gacgcgtccg gctttgccgc gtaccaactc catcgagtcg gggttctttt
     1381 tctgcggcat caaactcgat ccggtggcga ttgcgtcgcc cagtgaaaaa aatccaaact
     1441 cactcgacgc gtaaagaatg atgtcttcgg caagacgcga gagatggacc atcacgagcg
     1501 aacagtcgct caggaactcg acacagaaat cccgatcgct gatggcgtct aaactattac
     1561 gcgatacagc ttcgaaaccc aactcttttg ccaactcttc tcgatctatc gggaaagacg
     1621 ttcctgccag cgccgccgat cccaatggca acacattcac gcgcccacgc gtctccgcga
     1681 gccgctcgcg atcgcgcgcg agcatttcga agtaagccaa acaccagtgg gccaacagca
     1741 ccggctgcgc gcgctgcaaa tgcgtgtacc ctgcaataac aacctcacta ttcccttccg
     1801 caaactccac cagcgccgtt tggaccccgc gaaccaatcc atccaaatcg tagagcgccg
     1861 cacgaatcca cagcctaaaa tccgtggcca cctgatcgtt acggctgcga cccgtgtgca
     1921 gcttgcgccc aacatcccca accaactcaa ccaaccgcgc ctcaacaaac gaatgcacat
     1981 cctctgcgtt tgatcctgcg tcaaccccct gtgcagctat cgcttccaat ccccgcgtaa
     2041 tgacgctcgc atcagcggga ctcacgactc cagcacgttc caacgccgcg cagtacgcga
     2101 tactcgcccg cacatcgacc tcaaacaacc gtcgatcgaa gcgaaacgaa ttgttgaact
     2161 ccgcgaagcc cggatcggcc ttgccgctga agcggccacc ccaaagattt ttctcactca
     2221 ttgtttgacc ctgtaccaac tgacgtgcta gtttatgcat ctatgcattg tttatgcaag
     2281 ttctatgaat aaacgggacc ggcaacaaat gatcctgggc ctgatacaag ccaggccgat
     2341 cggcacgcag gaagaccttt gcgcactgct cgaacgcgcc ggggtcacag ccacgcagtc
     2401 aagcgtgtcg cgcgatctgg aagagctcgg gatcgtcaaa cagcacggct attacacgtt
     2461 gccgcgcgca aacggcgcgt ccgcgcgcgg actgctgagt ttagaccagg cgggcgacag
     2521 tttagtagtc gcacgcacga tgccgggact cgcttccgcc gtcgcggtgg agatcgacgc
     2581 ggccgcgctt ccggaagtag tcggcacgat cgcgggagaa gacacgatat tcatcgccgt
     2641 gcgcgacgcg aagtcgcagc ggccgacaat caagcaggtt tgggaacttt ttggccacgg
     2701 cggggcatag ccacgcctca catccggcgg cgaagccggt ttgaaaggcg cgtgaggaat
     2761 cagtgatgaa agcgaaggtt agcaaaattg ttctggccta ctcgggcgga ctcgacacgt
     2821 cagtgatgct gcgctggctg aaggattact acgactgcga agtcgtttgc tactgcgccg
     2881 acgtgggcca gggcgctgag ctgtccggtc tcgaagagaa ggcgcacgcg accggcgcgt
     2941 cgaaactcta cgtcgaagat ctgcgcgagg agtttgtgcg cgattacgtg tggaccgcgg
     3001 tcaaggcgaa cgcggtttac gaaggcgtgt atctgatggg cacgtcgctc gcgcgccccg
     3061 tgatcgccaa gcgtcagatc gagatcgcgc gccaggaagg cgcggacgcg gtcgctcatg
     3121 gtgcaaccgg caaaggtaac gatcaggttc gtttcgaact gacgtattac gcgctgcaac
     3181 ccgatatcaa agtcatcgct ccgtggcgcg agtgggaatt taaaggccgc gcggatctga
     3241 tggcgtacgc gaagcagcac gagatcccgg tcacggcgac ggcggagaag ccgtattcga
     3301 cggacgcgaa cctgatgcac atctcgtacg aaggcgggat tctcgaagac ccgtgggccg
     3361 aaccgccgga gaacattttt caactgacgc gcgcgccgga aaatgcgcgc gctgaggcgc
     3421 agtacgtcga gatctctttt gagaagggtg agccggttgc gatcgacgga cgcaagctcg
     3481 atccggtgac gctgctcgag acgctgaacc cgatcggcgg cgaacacggc atcgggcgcg
     3541 tcgatctcgt cgagaatcgt ttcgtgggga tgaagtcgcg cggcgtttac gagacaccgg
     3601 gagtgacaat tcttcatgca gcgcatcgtg cactcgagtc gatcacgctt gaccgcgaag
     3661 tgatgcactt gcgcgactcg gtgggagtga agtttgccga aagtatttac tacggtttct
     3721 ggtttgcgcc ggagttcaaa ctgttgcgca agacgatcga agacacgcaa acgcgggtca
     3781 cgggtgacgt gcgtctgaaa ctgtttcgcg gaaacgcgat cgttgtagga cggcgttcgc
     3841 cgcactcgct ttacgacgag cgcattgcga cgtttgaggc cgacacggtt tacaaccaac
     3901 gcgatgcgga aggttttatc aagctgaacg cgctgcggct gcggttggga ggtgacagat
     3961 gagtgaca
//
LOCUS       DASWTX010000578         1659 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_94631, whole genome shotgun sequence.
ACCESSION   DASWTX010000578 DASWTX010000000
VERSION     DASWTX010000578.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1659
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94631"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..338)
                     /locus_tag="VGD38_08820"
     CDS             complement(<1..338)
                     /locus_tag="VGD38_08820"
                     /inference="COORDINATES: protein motif:HMM:NF024912.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728156.1"
                     /translation="MCGITGWATLDSHVPPPEGAKDLVHAMCERMVHRGPDSEGLFVT
                     TGAALGMRRLAIIDLVTGEQPVFNEDRSVAVVLNGEIYNYRELRASLEKRGHSFRSAS
                     DTEVLPHLYE"
     gene            complement(341..1348)
                     /locus_tag="VGD38_08825"
     CDS             complement(341..1348)
                     /locus_tag="VGD38_08825"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY0728157.1"
                     /translation="MKVLDETETLTQPATRADEPPEISVFLPVYNEEPNLRPLHAKLD
                     AALKTLGRSAEIVYVDDGSNDGSLQILRELAEVDSRVRVIALRRNYGPTAAMAAGIDA
                     ARGKVLIPMDADLQNDPADIERLLKKLDEGYDVVSGWRKNRKDKMVTRKIPSMLANRL
                     ISWIGGVPLHDYGCSLKAYRRESLQDVRLYGEMHRFIPIYASWAGARVTEIPVEHHAR
                     TMGKSKYGLSRTLKVVFDLMTIKFMASYQTKPIYVFGSFGMLAFAISLFSGLYAVFLK
                     VIHKADFVQTPLPVLSIVLFAVGVQFLLMGLLAEMLVRTYHESQAKSIYAVRERLGFK
                     D"
     gene            complement(1345..>1659)
                     /locus_tag="VGD38_08830"
     CDS             complement(1345..>1659)
                     /locus_tag="VGD38_08830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728158.1"
                     /translation="TYIDDIIDGLVAAIRYNKSNYEVFNLGESRTVELRELITLLEKE
                     LNIRAKRLRGPEQPGDVPQTFADVTKARELLGYNPQTQIEAGLHRFVEWFRGNWSKMP
                     AR"
BASE COUNT          361 a          488 c          467 g          343 t
ORIGIN      
        1 tcttcgtaca gatgcggcaa cacttccgta tccgaagcac tgcgaaacga atggccacgt
       61 ttctcgagtg aagcgcgaag ctcgcgatag ttgtagatct cgccgttaag aacgacggcg
      121 accgatcggt cttcattgaa aacaggctgc tcgcccgtga cgagatcgat gatcgcgagg
      181 cgtcgcatac cgagcgcggc gccggtcgtc acaaacaaac cttcggaatc aggaccgcga
      241 tggaccatgc gctcgcacat cgcgtgcacc agatccttcg cgccttcggg aggcggcacg
      301 tgtgagtcga gggtggccca accggtaatt ccgcacatac ttagtcttta aatcccaacc
      361 gctcgcgtac ggcgtagatc gacttcgcct gtgattcgtg atacgtgcgc acgagcatct
      421 cagccaacaa gcccatcaat aaaaactgta cgcccaccgc aaacaacacg atcgacagaa
      481 ccggcaaagg cgtctgcacg aaatccgcct tgtgaatcac tttgaggaaa actgcgtaaa
      541 gaccgctgaa caacgagatc gcaaacgcca gcatgccaaa cgaaccaaac acgtagattg
      601 gtttcgtttg atacgacgcc atgaacttga tcgtcatcag gtcgaaaacg accttcagcg
      661 tgcgcgacaa accgtatttc gacttgccca tcgtgcgcgc gtgatgctcg accgggattt
      721 ccgtgacgcg cgcgcccgcc cacgatgcgt aaatcgggat gaagcgatgc atctcgccgt
      781 agagacgcac gtcctgcaac gactcgcggc gatacgcttt caacgagcag ccgtaatcgt
      841 gcagcggcac gccgccgatc cacgagatca aacggttcgc gagcatcgac ggaatcttgc
      901 gcgtgaccat cttgtctttg cggttcttgc gccaaccgga aacgacgtcg taaccctcgt
      961 cgagtttctt gagcaaccgc tcgatgtctg ccggatcgtt ttgcaggtcg gcgtccatcg
     1021 gaatcagcac cttgccgcgc gcggcgtcga tgcccgcggc catcgcggcc gttggaccgt
     1081 agttcctgcg caacgcgatc acgcgcacgc gcgaatccac ctcggcgagt tcgcgcagga
     1141 tttgcaagct gccgtcatta gagccgtcgt cgacgtaaac gatttccgcg gaacgcccga
     1201 gcgtcttcaa cgccgcgtcg agcttcgcgt gcaggggacg aagattcggt tcctcgttgt
     1261 aaaccggaag gaagaccgag atttcgggcg gttcgtcagc gcgcgttgcg ggctgtgtca
     1321 gggtttcggt ttcgtcgagg actttcatcg cgcaggcatt ttagaccagt tcccccgaaa
     1381 ccactcaaca aaccggtgca ggccggcttc gatctgtgtt tgcgggttgt aaccgagcag
     1441 ttcgcgggct ttggtgacgt cggcgaatgt ttgcggcacg tcgccgggtt gctcggggcc
     1501 acgaagtctt ttcgcgcgga tgttgagctc cttttccagc agtgtaatca attcgcgcaa
     1561 ttcaacggtc cgcgactcac caagattgaa aacttcatag ttactcttgt tgtagcgaat
     1621 ggcggcgaca agaccatcga tgatgtcgtc gatgtaggt
//
LOCUS       DASWTX010000579         2951 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_136607, whole genome shotgun sequence.
ACCESSION   DASWTX010000579 DASWTX010000000
VERSION     DASWTX010000579.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2951
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136607"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..556
                     /locus_tag="VGD38_08835"
     CDS             <1..556
                     /locus_tag="VGD38_08835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728159.1"
                     /translation="ASSGQPFNITTGRDTNGDTFFSERPGFATDVNKPGVVVTPLGAF
                     DPNPSPGQEIIPRNFGRGPGFVSVNFNIAKVFKFGPAIEPKAPPPGGPATTSAGAPSG
                     PAASGSAAPKPPPKPPVQRPYSLTFSASINNLFNRNNEGTPIGNMSSPYFLKSASGSN
                     TFFFGGGGGSGGNRTITLRVRLSF"
     gene            585..875
                     /locus_tag="VGD38_08840"
     CDS             585..875
                     /locus_tag="VGD38_08840"
                     /inference="COORDINATES: protein motif:HMM:NF019491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dabb family protein"
                     /protein_id="HEY0728160.1"
                     /translation="MLTHIVVWKYRADTEQFAREEHVKLLGNLASIIPEVQSLSVGFD
                     MLGLPRSYDTGLVATFADRAALEAYTIHPEHVKVAEFGRSISEHVASVDFIS"
     gene            872..2014
                     /locus_tag="VGD38_08845"
     CDS             872..2014
                     /locus_tag="VGD38_08845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728161.1"
                     /translation="MRSVFKKILIGIVVVFLLAQIPFACRRYKLRKLNAAVQQINSEL
                     ARIPKPMYRYEYKGAVHVHSFLGGHSSGTFSEIIDAAKANQLDFVIMTEHTEKDFDTA
                     AMTLQGVHRDVLFINGNETSAENGDRFLKLPQNVSIAAYPEEFKNWETPGLNGVEVYN
                     VFSNTRRANPIVAFFDVLWSHRAYPDLLFGLYFERPNESLKLWDQALTRTRLTALGGN
                     DAHSNIGLSLRDSSGKTLAGIQLDPYETSFRLVRLHVITNDAKVLLPEHLLDAIKAGH
                     CFIGFDLFGDTSGFTFEAKTPTETKIQGDEIPLQNDTRLVIHTPVASRILLFKDGSAI
                     LNESGVTTKEIPVTERGVYRVEVYLPEVERIIGEKPWIISNPIYVR"
     gene            2301..>2951
                     /locus_tag="VGD38_08850"
     CDS             2301..>2951
                     /locus_tag="VGD38_08850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728162.1"
                     /translation="MEIRIPTPQNFNFKRTIISHGWYGLLPFGLNSEKWELSRVIDVG
                     PKPPVNVTMSGRKRHVRVTVQRELNQTETAKVIRDARHILRLDDDLQPFYLATGADPE
                     FAWIGVQGAGRMLRSPTVFEDLVKMLCTTNCSWALTQKMVTGLVENLGRETADDGEKR
                     RSCPTAAVMAEMPLKFFVDEVRSGYRAPYLKELAGRVAAGELNVEEWLTSPVSTPEL"
BASE COUNT          658 a          896 c          791 g          606 t
ORIGIN      
        1 cgccagctca ggtcagccgt tcaacatcac gacgggccgc gacacaaacg gcgacacgtt
       61 cttcagcgag cgtccggggt ttgccactga cgtgaacaaa cctggcgtcg tcgtcacacc
      121 gctcggcgct ttcgatccga atccttcacc cggccaggaa atcattccgc gaaacttcgg
      181 acgtggacca ggcttcgtct cggtgaactt caacatcgcg aaggtgttca agtttggacc
      241 agccatcgaa ccaaaagcac cgccgccggg tggaccagcc acaaccagcg ccggcgcccc
      301 gtctggcccg gcagcatcgg gaagcgcggc gccgaaaccg ccaccgaagc ctccggtgca
      361 gcggccgtat tcgttaacct tctcggccag catcaacaat ctcttcaacc gcaacaacga
      421 gggcacgccc atcggcaaca tgtcctcgcc ctacttcttg aaatccgcct cgggttcaaa
      481 tactttcttc ttcggcggtg gcggtggctc tggtggtaat cgaacgatta cactacgagt
      541 caggttgagt ttctaaatct acgaatccga gttctgatca aaacatgctg acgcacattg
      601 tggtctggaa gtaccgcgca gacacggagc agtttgcgcg cgaggaacac gtgaagctcc
      661 tgggcaatct ggcgtcgata attccggaag tgcaaagtct ctcggtgggc tttgacatgc
      721 tcggtctgcc gcgctcgtac gacaccggtc tcgtcgcgac gtttgcagat cgcgcggcgc
      781 tcgaggctta caccattcat cccgaacacg tcaaagtcgc ggagtttggc cgcagcatca
      841 gcgagcacgt cgcatccgtg gacttcatca gttgagatcc gtgttcaaaa agattctcat
      901 tggtatcgtc gttgttttcc tgctggccca aattcccttt gcgtgtcgcc gttacaaact
      961 ccgcaagctg aacgccgcgg tccaacagat caattccgag ctcgcgcgta ttccgaagcc
     1021 aatgtatcgc tacgagtaca aaggggcggt ccacgttcac tcgtttctcg gcggacacag
     1081 ctcgggaacg ttttcggaga tcatagacgc tgcgaaagcg aaccagttgg acttcgtgat
     1141 catgaccgag cacacggaga aagatttcga caccgcggcc atgaccttgc agggggtgca
     1201 tcgcgatgtg ctctttatca acggcaatga gacttccgcc gaaaacggcg atcgttttct
     1261 gaagctgcct cagaacgttt cgatcgcggc ttacccggaa gagtttaaga attgggaaac
     1321 gccgggtctg aatggcgtcg aggtttacaa cgtcttttca aacacgcgcc gcgcgaatcc
     1381 gatcgtggcg ttcttcgatg tgctttggtc gcaccgcgcg tatcccgacc tgctctttgg
     1441 gctctacttc gaacggccca acgagagttt gaagctgtgg gaccaggcgc taacgcgcac
     1501 gcggctgacc gcgctcggcg gcaacgacgc gcactcgaac atcggtttga gcctgcgcga
     1561 cagctccggc aaaacgctcg ccggaatcca gctcgatcca tacgaaacga gttttcgcct
     1621 ggtccgcctc cacgtaatca caaacgacgc caaggtgctc ctacccgaac atctgctcga
     1681 cgcgatcaag gcgggccact gcttcatcgg ctttgatcta ttcggcgaca catccggttt
     1741 caccttcgaa gcaaaaactc caacggaaac caaaatccag ggcgacgaaa tcccgctcca
     1801 aaacgacact cgcctggtca ttcatacgcc agtcgcgagt cgcattttgc tcttcaaaga
     1861 cggctcggca attctcaacg agagcggggt tacaacgaag gaaatacccg taactgagcg
     1921 cggggtttac cgggtggaag tttatttacc agaagttgaa cggataattg gcgaaaagcc
     1981 gtggatcatt tcgaacccga tttacgtacg ataaatggat ttaaaaacgg ctacgcccca
     2041 ccgggtgccc tgctagctgc cctgtggggc gtcaaaccat cgccggaaag ctccggctta
     2101 cttgttctcg gaagcggtgc gtacgttcac cggattactg ttggggacct agtgtttggt
     2161 cccgacactc cctcgttccc gagtatagtg ggtttcggga gaacagcctt ccacacactg
     2221 ttttttcaag tccgtccagt ctaggcttgg tacgctagcg tgtcaagatt caggttgacc
     2281 gaatctgaac aatacaagtt atggaaatca gaatacccac tccgcaaaac ttcaatttca
     2341 aaaggaccat catcagccac ggctggtacg gcttgctgcc ttttggcctg aattccgaga
     2401 aatgggaact ctcgcgcgtc atcgatgttg gcccaaagcc acccgtgaat gtcacaatga
     2461 gcgggcgaaa acgtcacgtc cgtgtcacag tccaacgcga gctcaaccag accgaaaccg
     2521 ccaaggtcat ccgcgacgcc cggcacatcc tccgcctcga cgacgacctg caaccgttct
     2581 atctcgccac gggcgccgac ccggagtttg catggatcgg cgtccagggc gctggacgta
     2641 tgctccgctc gccgaccgtc tttgaagacc tcgtgaagat gctctgcacc accaactgct
     2701 cctgggccct gacgcagaag atggtcacgg gcctggtcga aaacctcgga cgcgaaaccg
     2761 ccgacgatgg ggagaaacgc cgctcatgtc ccaccgccgc cgtcatggcc gagatgccgc
     2821 tgaagttttt cgtggacgaa gtccgctccg gctatcgcgc gccttacctg aaggagctgg
     2881 ccggacgtgt cgcagcaggc gaactgaacg tcgaggagtg gttaacaagc ccggtctcca
     2941 cgcccgaact c
//
LOCUS       DASWTX010000580         2086 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_335288, whole genome shotgun sequence.
ACCESSION   DASWTX010000580 DASWTX010000000
VERSION     DASWTX010000580.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2086
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335288"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..184
                     /locus_tag="VGD38_08855"
     CDS             <1..184
                     /locus_tag="VGD38_08855"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEY0728163.1"
                     /translation="NGSQFFIMHVDYPLPPAYTIFGRVIEGQDVVNAIATSATDRTDR
                     PVEEVRMEKVTIETTD"
     gene            complement(181..951)
                     /gene="thiD"
                     /locus_tag="VGD38_08860"
     CDS             complement(181..951)
                     /gene="thiD"
                     /locus_tag="VGD38_08860"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008902 - hydroxymethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0008972 - phosphomethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEY0728164.1"
                     /translation="MRSIQEDRPVVLTIAGIDPSGGAGIVADIKTIAAFECFPAAAIT
                     SITFQNAKRVFGAEHQTAATLRAQVEPIFQDAKVAAAKTGMLPTAEIVAEVARLFREE
                     DLPAPVVDPVMVSTSGHDLIGDPAFQVLKNELLPVSRVVTPNIPEAERLAGFSINSEA
                     DMRRAAEAIKSLGARAVLVKGGHRLTSQADAVDILLDETGSFTEFREEYIEVGEIHGS
                     GCTLSAAIAAALGKGMSLEAAVGAAKKYLTDQIRLLSA"
     gene            complement(929..1552)
                     /locus_tag="VGD38_08865"
     CDS             complement(929..1552)
                     /locus_tag="VGD38_08865"
                     /inference="COORDINATES: protein motif:HMM:NF014622.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEY0728165.1"
                     /translation="MLLNSHRPILYAITNGATKSTTTPDDHDFNRILHLAEGAVAAQI
                     SLFQLREKNLSARVLYELVTRATKITRGSSTKLLVNDRLDVALAAGADGVHLTSASLP
                     ARVVRRIAGPEFLIGASTHSLETARDARDGGADFAVFGPVFETESKRGFGPPQGLAKL
                     QQVTSELQGFPVIAIGGITLDNAESCFAAGASGIAGIRLFDAFNPGR"
     gene            complement(1479..1865)
                     /locus_tag="VGD38_08870"
     CDS             complement(1479..1865)
                     /locus_tag="VGD38_08870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728166.1"
                     /translation="MAAKLSVIFYIILCFEIGLALTVAPWWPPGMWGFGDWGNNFFLL
                     YAAQKTGIQGLQTVVASGWVRGAVSGIGLLNLGIAVWEIFHFRRTVAALRNQIEPRDH
                     RYHATELTPPNPVRDNERRDEEHNNS"
BASE COUNT          461 a          608 c          567 g          450 t
ORIGIN      
        1 gaatggatcg cagtttttca tcatgcacgt ggattatcca ctgccgccgg cttatacgat
       61 cttcgggcgc gtgattgaag gacaggacgt ggtgaacgcg atcgcgacgt cggccacgga
      121 tcggaccgat cgtccggttg aagaagtgag gatggaaaag gtcactatcg aaaccacaga
      181 ttaagcggac agtaaacgga tctgatcggt aaggtacttt ttcgcggctc cgactgcagc
      241 ttccaacgac atccctttgc ccaaagctgc tgcgattgcg gctgacagcg tgcagccgga
      301 gccgtgaatt tctcccacct cgatgtactc ctcacgaaac tcagtaaaac ttccggtttc
      361 atcgagaaga atatcgacag cgtccgcttg cgacgtcaat ctgtgcccgc cttttactaa
      421 aaccgcacgt gcgccgagag atttgatcgc ctccgcagcg cgacgcatgt ctgcttcaga
      481 gttgatggaa aatcccgcga gacgttccgc ctcgggaatg ttgggcgtca ccactcgaga
      541 caccggtaac agttcatttt taagaacctg aaaagccgga tctccgatca gatcgtgtcc
      601 tgacgtcgag accatcaccg gatcaacaac cggcgcaggc aagtcttctt cacgaaacaa
      661 acgcgctact tccgcaacga tctccgctgt cggcaacatg cctgttttcg ctgccgcaac
      721 cttcgcgtcc tgaaaaatcg gttcgacctg cgcgcgcagc gtcgctgctg tttgatgttc
      781 cgcgccaaac actcgctttg cgttttgaaa cgtgatcgac gttatcgcgg cggcgggaaa
      841 acactcgaac gcagcgatcg tcttgatgtc ggcaacgatg ccggcgccgc cggacggatc
      901 gatgcccgcg atcgtgagta cgactggtct atcttcctgg attgaacgca tcgaacaacc
      961 tgattcccgc gataccgctc gcgcccgccg cgaaacaact ctccgcatta tcgagcgtga
     1021 tgccgccgat ggctatcacc ggaaagcctt gcagttcgct cgtcacttgc tggagcttag
     1081 ccaaaccctg cggtggtcca aagccacgct tcgattcggt ttcaaacacg ggaccgaaca
     1141 cagcgaagtc tgcgccgccg tcgcgtgcgt cacgcgcggt ttcgagtgaa tgcgttgaag
     1201 cgccgatcaa aaactccgga ccagcgattc ggcgcactac acgcgccggt aacgaagcgg
     1261 aggtcagatg aacgccatcc gcgcccgcgg cgagtgcgac gtcgagacga tcgttgacca
     1321 gcagcttcgt cgaactgccg cgtgtgatct ttgttgcacg cgtgacgagc tcgtagagca
     1381 ctcgcgcgct caggttcttt tcacgaagtt ggaagagaga gatttgcgca gctaccgcac
     1441 cttcggcgag atgaagaatg cgattgaagt cgtggtcgtc aggagttgtt gtgctcttcg
     1501 tcgcgccgtt cgttatcgcg tacaggattg ggcggtgtga gttcagtagc atggtaccta
     1561 tggtcccggg gctcgatttg gtttcgcaac gcggcgactg tccgtctgaa gtgaaagatc
     1621 tcccacacgg caatgccgag attcagtaga ccgatgccgc tgacggcgcc acgcacccag
     1681 cccgaagcga ccaccgtttg taagccttga atgccggttt tctgggcggc gtataggaga
     1741 aagaagttgt tgccccagtc gccaaagccc cacattcccg gcggccacca cggcgcaacc
     1801 gtgagggcta atccgatttc aaaacaaaga atgatataga aaatgacact taacttcgct
     1861 gccataccac taaaaccagc cacagattca acaggttctg tttgatctgt ggttacttcc
     1921 ctttcaactg actgagcttg tcggcgactt cacgatacga aacgtcaacg ccgtaaactt
     1981 ccgtgtaaaa ctcacgcgcc tgtttgtagt cgccgagttg ttcgtacgcc gcacccagtt
     2041 cgtaacgcag cgccggatac tcgtcctcgc tgtgacccgg tgcgga
//
LOCUS       DASWTX010000581         2232 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_291933, whole genome shotgun sequence.
ACCESSION   DASWTX010000581 DASWTX010000000
VERSION     DASWTX010000581.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291933"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1567
                     /gene="dacB"
                     /locus_tag="VGD38_08875"
     CDS             <1..1567
                     /gene="dacB"
                     /locus_tag="VGD38_08875"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:NF014200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_function: GO:0009002 - serine-type D-Ala-D-Ala
                     carboxypeptidase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="D-alanyl-D-alanine
                     carboxypeptidase/D-alanyl-D-alanine-endopeptidase"
                     /protein_id="HEY0728167.1"
                     /translation="MNRSRRIISTLLVLLIFAAPLSAQTAPKTLAELQTRIAEILAKP
                     ELAPAMVGVKAVSLDNGRILFEENAIKLLRPASNMKIYTVAAALDRLTPDYRFSTSVF
                     APGKPDSAGVIHGDLRIYGRGDPSIAARFNNGDYFKAIDDLAARIVAAGVKRVEGDLI
                     GDETYFTGPKYGSGWEWEDLTWYYGAEVTPLSINDNALDLFVKPGPAVGQPALITTGP
                     PDPLLTIVNRVTTSAKGVRREISIHRGLNENTITITGSIPLEDRGYTAGVGISHPALL
                     FVYLLRNSLAQKGVVITGKSRTTGEVAIPSISSVPSVAQEEIASLQSPPFSLIAAQTL
                     KPSQNLYTELILRTLGKLSPPPPTFTISNPTSEQLGLEAVRTFLKTTGIRPESLVLDD
                     GSGLSRGDMITADATVQLLTYMSRHRFANVFRDALPIAGVDGTLRNRMRGTPAENNVR
                     AKTGSLSSAASLAGYVTTAAGEKLAFAVMVNNYPREVDARAACIDPIAVLLASFNGKP
                     ESSSVKPESKDAP"
     gene            1557..>2232
                     /gene="dapF"
                     /locus_tag="VGD38_08880"
     CDS             1557..>2232
                     /gene="dapF"
                     /locus_tag="VGD38_08880"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HEY0728168.1"
                     /translation="MPPKFTKFHGLGNDYLVIEAAELSHVSDLGEFARRICNRHYGAG
                     GDGIAIISKSETEDADFNCRIFNPDGSEAGLSGNGTRCAVAYLYHAGHWSKDELRLST
                     KTGLKRYYPRGEIAPGKYLFESDLGRPKFDSSSIPMSISPPLDQVIGYVLPVEGEPVV
                     VTAMQMGNPNCCIFVDDFDALNWRRIGKIIETHPQFPDRTNVVFIRVRERNLIELRIW
                     ERGVGET"
BASE COUNT          477 a          693 c          613 g          449 t
ORIGIN      
        1 tatgaacaga tcgcgacgaa taatctcaac actcttagtc cttcttattt tcgcggcgcc
       61 cttaagcgcg caaacggctc ccaagactct cgccgagtta cagacacgga ttgcagagat
      121 cctggccaaa ccggaactcg cgccggcgat ggtcggcgtc aaagccgtct cgctcgacaa
      181 cggccgcatc ctgtttgaag agaacgccat aaaacttctc cgtccggcgt cgaacatgaa
      241 gatttacacg gtcgccgccg cgctcgatcg tctgacgcct gactaccgtt tcagcacgtc
      301 tgtgttcgca cctggcaagc ctgattcagc cggtgtgatt cacggcgact tgcgcatcta
      361 cggccgcggc gatccgtcga tcgcggcgcg cttcaacaac ggcgactact tcaaagccat
      421 cgacgatctc gccgcgcgca tcgtcgccgc gggtgtcaaa cgcgtcgaag gcgatttgat
      481 cggcgacgag acttacttca ctggtccaaa gtacggctcg ggttgggagt gggaagatct
      541 gacgtggtac tacggcgcgg aagtcacgcc gctcagcatc aacgacaacg cgctcgatct
      601 gttcgtcaaa cccggcccgg cggtgggcca acctgctttg atcacgacgg ggccgcccga
      661 tccgttgctg acgatcgtga atcgcgtcac gacctcggcg aaaggcgtgc ggcgcgagat
      721 ctcgatccat cgcggtctca acgaaaatac gatcacgatc accggcagta ttccactcga
      781 agatcgcggt tacacggccg gcgtcggcat ctcgcatccg gcgctgttgt tcgtgtatct
      841 cctgcgcaac tcgctcgcgc agaagggcgt cgttatcacg ggcaagtcgc gcacgaccgg
      901 cgaagtcgcg attccatcca tatcatctgt tccatctgtg gcccaggaag agatcgccag
      961 tctccagtct ccgcccttca gcctgatcgc cgcgcagact ttgaaaccga gccaaaacct
     1021 ctacaccgag ctgatccttc gcacacttgg gaaactatca ccgccgcctc ccacgtttac
     1081 gatctccaat cccacctccg agcaactcgg actagaagcc gtcagaacgt ttctgaagac
     1141 tactggcatc cgtcctgagt ctctcgtcct ggatgacggc tcgggactct cgcgcgggga
     1201 catgatcacg gctgacgcaa ctgtgcagtt gttgacctac atgagccggc atcgcttcgc
     1261 aaacgtgttt cgcgatgcgt tgccgattgc gggagtcgac ggcacgttgc gcaatcgcat
     1321 gcgcggcacg cccgcggaaa acaacgtgcg cgcgaaaacc ggttcgctga gctcggccgc
     1381 cagtctcgcc ggttacgtga ccaccgccgc gggcgagaaa ctcgcgttcg cggtcatggt
     1441 gaacaattac ccgcgcgagg tcgatgcgcg cgccgcgtgc atcgatccga tcgcagtctt
     1501 gctcgcctct ttcaacggga aaccagaatc cagcagcgtc aaacctgaat caaaagatgc
     1561 cccctaaatt cacgaagttt cacggactcg gaaacgacta tctcgtgatc gaagccgccg
     1621 agctgagtca cgtcagcgac ctcggtgaat tcgcgcgccg catctgcaat cgtcattacg
     1681 gcgcgggcgg cgacggcatc gccatcatct ccaaatcgga aaccgaggac gcggatttta
     1741 attgccgcat cttcaatccg gacggcagtg aggccggact ttccgggaat ggaacacgtt
     1801 gcgcagttgc gtatctctat cacgccggcc attggtcgaa agacgaactg cgactcagca
     1861 cgaagacggg tttgaagcgt tactatcctc gcggagaaat tgctccaggc aagtacttgt
     1921 tcgagtcgga tttgggaaga cccaagtttg actcgtcatc aattccgatg tcgatctcgc
     1981 cgccgttgga ccaggtgatc ggttacgtgc tgcccgtcga aggcgaaccc gtggtggtca
     2041 ctgccatgca gatgggaaac ccgaactgct gcatctttgt cgacgacttc gacgcattga
     2101 actggcgccg cattggcaaa attatcgaaa cacacccgca gtttcccgat cgcacaaacg
     2161 tcgtcttcat tcgcgtacgc gaaagaaatc tgatcgagct gcgcatttgg gaacgtggcg
     2221 ttggcgaaac ca
//
LOCUS       DASWTX010000582         3526 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_159724, whole genome shotgun sequence.
ACCESSION   DASWTX010000582 DASWTX010000000
VERSION     DASWTX010000582.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3526
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159724"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            115..624
                     /locus_tag="VGD38_08885"
     CDS             115..624
                     /locus_tag="VGD38_08885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728169.1"
                     /translation="MGCEACHGPGEKHLVAMKAKNLDEPQIFNPGGLGGHELTRSFCG
                     TCHTSFEQAMLQPGQSGLNNIRFQPYRMFNSRGHNTNDPRISCVSCHNPHEKLQKDTA
                     YYDQKCLACHLTTAKDVKTERRNAAPCPVSKNKCSTCHMPKVDFPGMHAEFTDHWIRI
                     VKPGEPVPR"
     gene            complement(721..1734)
                     /locus_tag="VGD38_08890"
     CDS             complement(721..1734)
                     /locus_tag="VGD38_08890"
                     /inference="COORDINATES: protein motif:HMM:NF024827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiheme c-type cytochrome"
                     /protein_id="HEY0728170.1"
                     /translation="MSCHKDYTDYLRTAHHFTSRAASKDSILGKFDNVLKTSEPELFY
                     RLEARANGFFQTGVLGTPPDAVSISQRFDLVIGSGRKGQTYLYWGENDQLFQLPVSFW
                     TAVGWVNSPGYGDRTLDFSRPVLPRCLECHGSFFQPVTGVANRYRRDGYVLGVSCERC
                     HGPGAEHIALNSAPNAKPTQQAIVNPAKLSRERQMDLCGLCHGGVGVAKTPPFSFTVG
                     NALADHIQLEKPKPDEPLDVHGNQLALLERSKCFQASTMTCSTCHDVHRSQREASDFS
                     AKCMQCHKVQSCGLFRTRGRAIEGKCVDCHLPNQNSNVIFSSHDRMRITPKVRNHWIK
                     VYR"
     gene            complement(1793..>3526)
                     /locus_tag="VGD38_08895"
     CDS             complement(1793..>3526)
                     /locus_tag="VGD38_08895"
                     /inference="COORDINATES: protein motif:HMM:NF012931.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 20 glycosylhydrolase"
                     /protein_id="HEY0728171.1"
                     /translation="DIPAVDENESYRIDITHRQALLSAPTVVGAIRGLETVLQLVDAD
                     RRGYFLPGVKIQDQPRFPWRGLLVDVARHFEPIEVLKRNLDAMAALKMNVLHWHLTED
                     QGFRVESKKYPKLHQLGSDGNYYTQEQIKDVIAYARDRGIRVVPEFDIPGHSTSWLVG
                     YPELGSAPGPYTIERRPGIFEPALDPTREEVYKFLEVFLGEMAALFPDAYLHIGGDEN
                     EGKQWDRNPAIQAYMKQKGIKDNHALQAYFNTRLLKILQKHGKKMIGWDEILQPELPN
                     DVVIHSWRGTAALAEAARKGYDGILSNGYYIDLIQPASHHYASDPLPADSTLTPAQAK
                     HVLGGEATMWAEWVTHETIDSRIWPRTAAIAERLWSPRSVNDVNDMYRRMAVISLQLE
                     ELGLAHKKNQDMMLRRMLRSDDIGPLKTLVSIVEPVKEYRRYQQRPQTMLSPLTGVVD
                     AAWPDSETARKFGLMVDAFLADAPRFQIYRSELGQMLANWQTSGATLEPLIDRSPSLK
                     EVKPLAANLSVLGETGLEALSYLKLGVPATAEWRTASLLKMDEAAKPYGALEFMVVPS
                     IRKLILATGSK"
BASE COUNT          731 a         1020 c         1046 g          729 t
ORIGIN      
        1 ggaagacgcg cttgggcggg cgattgtcgg tgaggagccg cagcagtgtt ttgggtgtca
       61 ctccaccggc gcggttcagg gattggagct gaactggacc agctaagtcc gggcgtgggt
      121 tgtgaggcgt gtcatggacc aggcgagaag catctcgtcg cgatgaaagc gaagaacctc
      181 gacgagccgc agatcttcaa tcccggtggg ctgggtgggc atgaactgac gcggtcgttt
      241 tgcggcacgt gtcacacgag tttcgaacag gcaatgctgc aaccgggaca gtcggggctc
      301 aacaacattc gtttccagcc gtatcgcatg ttcaatagcc gcggtcacaa cacgaacgat
      361 ccgcgcatca gttgtgtgag ttgtcacaac ccgcacgaga agctgcagaa agatactgct
      421 tactacgatc agaagtgtct cgcctgtcac ctcaccaccg cgaaagacgt gaagaccgag
      481 cggcgcaacg cggcgccttg tccggtgagt aaaaacaaat gctcgacgtg tcacatgccc
      541 aaagtcgact tcccggggat gcacgcagag ttcacagatc attggatccg catcgtcaaa
      601 cccggcgaac ccgtcccacg ctaaggcgaa ccgtcccaca ctaagaagag ttcagagttc
      661 aagctttagc ttgctgcttc acctgtgacc cgaacaagct aaagcttgaa ctcaaaacgg
      721 ctagcggtaa accttgatcc agtggttgcg cactttgggg gtgatgcgca tgcggtcgtg
      781 gctggagaag attacgtttg agttttggtt tggcaggtgg caatccacgc acttgccttc
      841 gatcgcgcgg ccgcgcgtgc gaaagagacc gcagctctgc accttgtgac actgcataca
      901 cttcgcggag aagtcgctcg cctcgcgttg cgagcgatgc acgtcgtgac acgtcgagca
      961 ggtcatggtt gacgcctgaa aacatttgct tcgttccaac agcgcgagtt gattaccgtg
     1021 aacgtcgagc ggttcgtcgg gctttggctt ctcgagttga atatgatctg cgagcgcgtt
     1081 tccgacagtg aaggaaaacg gcggcgtttt cgcgacgccg acgccgccgt gacacagacc
     1141 gcacaaatcc atctgccgct cgcgtgaaag tttcgccggg ttcacgatcg cttgctgcgt
     1201 tggtttggcg ttcggcgccg agttgagtgc gatgtgttcc gcgcctggtc catggcaacg
     1261 ttcgcacgac acgccgagca cgtaaccgtc tcggcgatag cggttcgcga cgccggtcac
     1321 aggttgaaag aacgaaccgt gacattcgag acaacgcggc agcaccggac ggctgaagtc
     1381 gagtgtgcga tcgccgtagc ccggactgtt tacccaaccg acggcggtcc agaacgaaac
     1441 cggcaactgg aagagctgat cgttctcgcc ccagtagaga tacgtttggc ctttgcggcc
     1501 ggagccgatg acgagatcga aacgttgcga gatcgaaact gcgtcgggcg gcgtgccgag
     1561 gacgccggtt tggaagaagc cgttcgcgcg tgcttcgagg cgatagaaca gttcgggctc
     1621 tgaggtctta aggacgttat cgaacttgcc gaggatggaa tccttcgagg ccgcccgtga
     1681 agtgaagtga tgggcggtcc gaaggtaatc cgtgtaatcc ttgtgacagg acacgcactg
     1741 agcgttgctt gcgattacaa ccagaacacc ccaaacacag atcagacaaa ttttacttac
     1801 tgccagtcgc aaggattaac ttccgaatac tcggcaccac catgaactcc aacgcgccgt
     1861 aaggctttgc cgcttcgtcc atcttcaaca ggctcgccgt gcgccattcg gcggtcgccg
     1921 ggacgccgag tttcaagtac gacaacgctt cgagacccgt ttcgcccagc accgagagat
     1981 tcgcagccag cggcttgacc tctttcaacg aaggcgaacg atcgatgagt ggttccagcg
     2041 tcgcgccgga agtttgccag ttggccaaca tctggcccaa ctccgagcga tagatctgaa
     2101 accgcggcgc atccgcgaga aacgcgtcaa ccatcaaacc aaacttgcgc gccgtttcgc
     2161 tgtcgggcca cgccgcatca acgacacccg tcaacgggct caacatcgtc tgcggccgtt
     2221 gttgatagcg ccggtactcc ttcaccggtt cgacgatcga cacgagcgtc ttcaatggac
     2281 caatgtcgtc gctgcgcaac atccgccgca acatcatgtc ctgattcttc ttgtgcgcca
     2341 gtcccaactc ttccaactgc aaactgatca ccgccatccg ccgatacatg tcgttgacgt
     2401 cgttgacgct gcgcggcgac cagagtcttt cagcgatcgc ggcagtgcgc ggccagatac
     2461 gcgaatcgat cgtctcgtgc gtcacccatt cggcccacat cgtcgcttcg ccgccgagca
     2521 cgtgcttcgc ttgcgcgggc gtgagcgtgc tgtcggcagg cagcggatcc gaagcgtagt
     2581 ggtgcgacgc cggttggatc agatcgatgt agtaaccgtt ggagagtatg ccgtcgtaac
     2641 ccttgcgcgc ggcttcggcg agcgccgcgg tcccgcgcca cgaatgaatc acgacgtcgt
     2701 tcggcaactc gggctgcagg atttcatccc agccgatcat cttcttgccg tgcttctgaa
     2761 gaatcttgag caggcgcgtg ttgaagtagg cctgaagcgc gtggttgtct ttgattcctt
     2821 tctgcttcat gtaagcctga atcgcggggt tgcgatccca ctgcttgcct tcgttctcgt
     2881 cgccgccgat gtgcaggtac gcatcgggaa agagggcggc catctcgccg agaaagactt
     2941 cgagaaactt gtaaacctct tcgcgcgtcg gatcgagcgc gggctcgaag atgccgggac
     3001 gccgttcgat cgtgtatgga ccaggcgcac tgccgagctc cggataaccg acgagccagc
     3061 tcgtgctgtg gccgggtatg tcaaactccg gcacgacgcg aatgccgcga tcgcgcgcgt
     3121 aagcgatgac gtctttgatc tgctcctgcg tgtagtagtt gccgtcggaa ccgagctgat
     3181 gcagcttcgg atacttcttg ctttcgacgc ggaagccctg gtcttcggtc aggtgccagt
     3241 gaaggacgtt catcttcaac gccgccatcg cgtcgagatt gcgtttgagc acttctatcg
     3301 gctcgaagtg gcgcgcgacg tcgaccaata aaccgcgcca cggaaagcgt ggctgatcct
     3361 gaatctttac gcccgggagg aagtaaccgc ggcgatccgc atcgaccaat tgcaacaccg
     3421 tttcgagtcc gcggattgcg ccgacgactg ttggtgcgct caacaaagcc tgacggtgag
     3481 tgatgtcgat gcgataactc tcgttttcat caacggcggg aatgtc
//
LOCUS       DASWTX010000583         3428 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_116967, whole genome shotgun sequence.
ACCESSION   DASWTX010000583 DASWTX010000000
VERSION     DASWTX010000583.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3428)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3428
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116967"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1460
                     /locus_tag="VGD38_08900"
     CDS             <1..1460
                     /locus_tag="VGD38_08900"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HEY0728172.1"
                     /translation="RQQDIADILTGINVSTEELKSKPAELDAELEKLQTEYEEIENQI
                     RTASPRYASLTSNKPMTLAEVQQNVLDDQTVLVEYALQAEDSYLFAVSKSAVSLYKLP
                     GRATVDKYATELRAQLIPSKLQRRIVGIDVAEANRGLGIASSAPAETAAFVTASNALY
                     TTVLEPAAAMIGDKRLLVVADGALNYVPFEVLLKTADAGDFSSLGYLVKTNEIVYAPS
                     ASVVGAIKQQRAKSTSRALLVIADPVFNSNDARAKKGTATATTDADVRGLGIQSALAD
                     VDGNTPASNAAMEGLPLARLNGTRVEAEQISKLAKASGGQADVWLDLEANEENLGTRD
                     ISKYRIIHVATHGLLNAERPQFTGVVLSLVGNKTRDGFVRTDEVFNLRLGSPLVMLSA
                     CETGLGKERRGEGVMGLTRAFMYAGAPTVGVSLWSVADKSTADLMTDFYQRLLSASAG
                     TTSGSLRGAQLAMISGKKYSAPFYWAPFVLVGDWN"
     gene            complement(1495..2181)
                     /locus_tag="VGD38_08905"
     CDS             complement(1495..2181)
                     /locus_tag="VGD38_08905"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="PEP-CTERM proteins occur, often in large numbers,
                     in the proteomes of bacteria that also encode an
                     exosortase, a predicted intramembrane cysteine proteinase.
                     The presence of a PEP-CTERM domain at a protein's
                     C-terminus predicts cleavage within the sorting domain,
                     followed by covalent anchoring to some some component of
                     the (usually Gram-negative) cell surface. Many PEP-CTERM
                     proteins exhibit an unusual sequence composition that
                     includes large numbers of potential glycosylation sites.
                     Expression of one such protein has been shown restore the
                     ability of a bacterium to form floc, a type of biofilm;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEY0728173.1"
                     /translation="MFINRRLTRRASLTLICLLLLLTAAAPAAFADELAVWNFNDSNL
                     NVDHGSGTLSSNFNPANMLFAAGTTNNARLGHPAGQALSLQGGTGTANNGRHLTFNVS
                     TLGFSNIVVSFATQGTSTGFNSNQFQYSLDGINFVDFGLPYTPATAFGSVPLVFSLVS
                     IVALNNNPNAAFRIVFNGASSATGTNRIDNVVVEGTAATNVPEPMSAILLLSGLSGLY
                     AARRRKRAAT"
     gene            2420..2752
                     /gene="ytxJ"
                     /locus_tag="VGD38_08910"
     CDS             2420..2752
                     /gene="ytxJ"
                     /locus_tag="VGD38_08910"
                     /inference="COORDINATES: protein motif:HMM:TIGR04019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol system redox-active protein YtxJ"
                     /protein_id="HEY0728174.1"
                     /translation="MGNSFFKIDNRETLDKLITDSKDRPVVIFKHSNSCGISSAAYRE
                     MEKLEDQVNLLEVQSAREVSRELEDLTGIRHETPQVIVFKDGKAVWNASHFDVKAGAV
                     LRALESHT"
     gene            2939..>3428
                     /locus_tag="VGD38_08915"
     CDS             2939..>3428
                     /locus_tag="VGD38_08915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728175.1"
                     /translation="MHIVKLFPRFVLFLLLTATVVFAQDDPSATPTPAPQDDAVQSAQ
                     PSDTPSPTPAASPAASPVVTKIIPRVTEMFGHLELDDILEVRIENLEKWAAANENNDP
                     AKLVPYINGRAIRGNYPDELHVDRGRLIYHLQITPDNKEAWIDLLGAPSGVKRPVTLS
                     VGL"
BASE COUNT          799 a          978 c          957 g          694 t
ORIGIN      
        1 atcggcagca ggacatcgcc gatatcctga ccgggatcaa cgtctccact gaagagttga
       61 agagcaagcc ggcagagctc gacgcggaac tcgaaaagct gcaaaccgag tacgaagaga
      121 tcgagaacca gattcgcact gcgagcccgc gttatgcatc gctcacgagc aacaagccga
      181 tgacgctcgc agaggtgcag cagaacgtgc tcgacgacca gacggtgctg gtcgaatacg
      241 cactgcaagc ggaagactca tacctgttcg ccgtcagcaa gagcgccgtg agtttgtaca
      301 aactgccggg ccgcgcgacg gtcgataaat acgccacgga actccgcgcg caactcattc
      361 cttcgaaact ccagcgccgc atcgtcggca tcgacgtcgc cgaagccaat cgcggtttag
      421 gcatcgcgtc gtcggctcca gcggaaacgg cagcttttgt caccgcctcg aacgcgcttt
      481 acacaacagt actcgagccg gccgccgcaa tgatcggaga caagcgtctg ctggtcgtag
      541 ctgacggcgc gctcaattac gttccgtttg aagtgctgct caagaccgca gacgcgggcg
      601 acttctcgtc actcggttat ctcgtgaaga cgaacgagat cgtctacgcg ccttcggcct
      661 cggttgtcgg cgcaatcaag cagcagcgag caaagtcgac cagccgcgct ctcctggtga
      721 ttgccgatcc ggtcttcaat tcaaacgacg cccgcgcgaa gaagggaacc gccaccgcga
      781 cgactgacgc agacgtacgc ggcctcggca tccagagcgc gctcgccgac gtggacggaa
      841 acacgcccgc gtcgaacgca gcaatggaag gactcccgct cgcacgtctc aacggcacgc
      901 gcgtcgaagc agaacagatc tcgaagctgg ccaaagcctc cggcggacaa gccgacgttt
      961 ggctcgatct cgaggcgaac gaagagaacc tcggcacacg cgacatcagc aagtaccgca
     1021 tcattcacgt agccacacac ggcttgctga acgccgagcg accgcagttc acgggcgtgg
     1081 tcctgtcact cgtcggcaac aagacacgcg acggttttgt tcgcactgac gaagtcttta
     1141 atttgcgcct gggttctcct ctcgtaatgc tttcggcctg cgagaccgga ctcggcaaag
     1201 aacgacgcgg cgaaggcgtg atgggcctga cacgcgcgtt catgtacgcc ggtgcgccga
     1261 ccgtcggcgt aagcctctgg tcagtggccg acaaatcgac cgccgatctg atgacagact
     1321 tctaccagcg actgctgagc gcttccgcag gcacgacctc gggctcgttg cgtggcgcac
     1381 agctagccat gatctccggc aagaaataca gcgcgccgtt ttactgggcg ccgtttgtgc
     1441 tcgtcggcga ttggaactga agccggtttt cagtcttcga tataaagggc tgcgttatgt
     1501 cgcagccctt tttcttcgtc gcgcggcata cagaccgctc aacccactca acaacaggat
     1561 cgcgctcatg ggttcaggaa cattcgttgc cgctgttcct tcaaccacaa cgttgtcgat
     1621 ccggttcgtg cccgtcgcag aacttgcccc gttgaagacg atgcgaaacg cggcgttcgg
     1681 gttattgttc aaggccacga tactcactag cgagaacacc agcggtaccg agccgaacgc
     1741 ggtcgcgggc gtgtaaggca gaccaaagtc gacgaaatta attccgtcga gactgtattg
     1801 aaactggtta ctgttgaagc cggtgctggt tccctgcgtc gcaaaactca cgacgatgtt
     1861 cgagaaaccg agtgtgctga cgttgaaagt gagatgccgt ccgttgttcg cggttccggt
     1921 gccgccctga agcgaaagtg cttgtccggc tgggtggccc aagcgggcgt tattcgttgt
     1981 tccggctgca aacagcatgt tagccgggtt gaagttgctg gacagcgtgc cgctgccgtg
     2041 atcgacgttg aggtttgaat cgttgaaatt ccaaacggcc aattcatccg cgaatgccgc
     2101 cggcgcagca gcagtgagca gcagcaagag gcagatgaga gttaacgatg cgcgtcgagt
     2161 gagacgacga ttaatgaaca tacacgttct cctttgatga ggttttcaga catagattta
     2221 cctacgttga gaaagcggag aatcttgtaa gagactcgtg aggctcgtca gtaagtcgcc
     2281 cggctctgag gacagccaaa gctttctcgg tagctcaggc acaataaggc caaagatttt
     2341 gatcgtcaat agaaaagtga tttgtgtttg acaggatcgc tattcctgtg aggttatttt
     2401 catggtggag ggtataggta tgggaaatag cttcttcaaa atcgacaatc gggaaacact
     2461 cgataaactg atcacggatt caaaagacag acccgtagtt attttcaaac acagcaattc
     2521 ctgcggcatc agttccgccg cctaccgcga aatggagaaa ctcgaggacc aggtgaacct
     2581 gctcgaggtg caaagcgcca gagaagtttc tcgcgagttg gaagacttga cgggcattcg
     2641 tcatgaaaca ccgcaggtga ttgtcttcaa agacgggaag gcagtctgga acgcgtctca
     2701 ctttgacgtg aaagcgggcg cggtgttgcg agcgttggaa tctcacacgt aatgcgccaa
     2761 ctccgcttcc gtacaataga attgacttcc gctcgataac tgcgctaaaa agcttttagc
     2821 ttcatcgtgc ctttctggca ctaatcccgg gcctcgcatt ttagtagttc aatcgtttac
     2881 acaagcgcca gttttgcccc accttttagg ggcaattcgt gagcgcaagg acgcctcaat
     2941 gcacatagtg aaactattcc cccgcttcgt tcttttcctt ttgttaaccg ccacggtcgt
     3001 ctttgcacag gacgatccga gtgcgacacc cacaccggcg ccgcaggatg acgcggttca
     3061 gtcggcgcag ccaagtgaca cgccatcgcc aacgcccgca gcgtcgccgg ccgcatcacc
     3121 tgtggtcacc aagatcattc cgagagttac tgagatgttc ggccatctgg aactcgacga
     3181 cattcttgaa gtccgcatcg agaacctcga aaaatgggct gcggctaatg agaacaatga
     3241 ccccgcgaag cttgtgcctt atatcaatgg ccgagccata agaggcaact accccgacga
     3301 actccacgtg gaccggggcc ggttgatcta tcacctccag atcacccccg acaacaaaga
     3361 ggcctggatc gatctgcttg gcgcgccgag cggagtaaaa cgtccggtca cattaagcgt
     3421 tgggttag
//
LOCUS       DASWTX010000584         3054 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_30890, whole genome shotgun sequence.
ACCESSION   DASWTX010000584 DASWTX010000000
VERSION     DASWTX010000584.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3054
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30890"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(164..1321)
                     /locus_tag="VGD38_08920"
     CDS             complement(164..1321)
                     /locus_tag="VGD38_08920"
                     /inference="COORDINATES: protein motif:HMM:NF024792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein TadG-related protein"
                     /protein_id="HEY0728176.1"
                     /translation="MIMTAILMAGIILAVALCIDVARLYMLRTELQNAADAAALSAAR
                     ELSSGAGGITDAVSRATAIVNNYGFNDATVSIPSVNVEFAVNLNGPYVSAATAQANAL
                     NYRFVRVTTMDVASPMLFSARVWGAPSLTESKSAVAGMSVGINTICDFFPFAVALDDS
                     NTGDVGFTPPAPNTTMTLNFVQGTGNSMTLRNRDYIIIEVPEISGNGAPETIRLAAGT
                     TAMCQTLNMNVPFHATPSSNQNNGPRHIADGTNTRFNVYANGPGQLNPAAHPPDSNVA
                     QDISFQQYNDRTVVTPPNPNAPGVDQRRILVVPIVAPGNYTGSPVSAPTLAFGAFFLR
                     NQPTVDNPCSNALQGCARFDVEWIDERLVIGRGSFNPSGPNTSLTLPVLYR"
     gene            complement(1490..2998)
                     /locus_tag="VGD38_08925"
     CDS             complement(1490..2998)
                     /locus_tag="VGD38_08925"
                     /inference="COORDINATES: protein motif:HMM:NF012485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II and III secretion system protein family
                     protein"
                     /protein_id="HEY0728177.1"
                     /translation="MKPCSAVRNVILTLTVFLFAFPLNAAAQEMSTNASFGSDSKEPI
                     PVNVLVGQSRLLTFDRPIERFSVSNPEIAEAVLVTSNQVVVNGKTFGQINFIAWEKGS
                     SRFVVFDVYVRTNLSLIDSQIRALFPKDDIRLSQANGSVVLSGNVSDPRIATHAEAVV
                     QAAGFKTVNLLESPVKSATQVQLQVRVAEVSRKRMRELGTSWGYQGSPGTGGYINSGS
                     GPSSLGDVAGGLLTGNIANTLNLFVMGGNTLSFIRALQEQGALRALAEPNLIAMNGQE
                     ASFLAGGEYPVPVVQSGGDRNTVTIIFKEYGVRLNFKPTIIDEDHIRLELEPEVSTLD
                     FANGVRFEGFSIPALRTRRAKTGIELRDGQSFALAGLLDNNETQTLSKVPGIGDIPVL
                     GQLFRSRSFQRNESELMFIVTAQLVKPVNRDDLPSLPNVDSLKNGSLLGVEPKSGATL
                     IGPSGFSTTPGTPAAPPAGPKTTSPATTGAKVETLGTSAPAAAAPTKATPNQ"
BASE COUNT          648 a          828 c          892 g          686 t
ORIGIN      
        1 aacgtcgtgt atgtgtagaa cagtcggccc agttctaccg tgcccgcgaa aaggagaatc
       61 agcacaggaa aaataattgc gaactcgatc atctgcgtgc cgttctcgca gcgaagaaaa
      121 ttctgaatgg cgtttttcac gcgtgtcacc ttcatcgcgt acctcatctg tagagcaccg
      181 gtaaggtcag actcgtgttc ggtccactgg gattgaagga gccacggcca atcaccaacc
      241 gctcatcgat ccattcgaca tcgaacctgg cgcagccttg gagcgcattc gaacacggat
      301 tgtcgaccgt gggctgattc cttaagaaaa aggcgccgaa tgccagtgtg ggagcactca
      361 cgggtgaacc tgtgtagttt cccggcgcaa cgatgggcac caccagaata cgacgctggt
      421 ccacacccgg tgcgttgggg ttcggtggcg ttacgacagt gcggtcgttg tattgctgga
      481 agctgatgtc ttgcgcaacg ttgctgtcgg gaggatgagc agccggattc aattgaccgg
      541 ggccgtttgc atagacattg aaacgcgtgt tggtaccatc agctatgtgt cttggtccgt
      601 tgttctggtt ggagctgggc gttgcgtgga aaggaacatt catgttcagc gtctggcaca
      661 tcgctgtagt gccggccgcc aatctgatcg tttccggggc tccattaccg ctgatttcag
      721 ggacttcgat aatgatgtag tctctgttcc ggagagtcat tgagttgccg gtaccctgaa
      781 caaaattcaa ggtcatggtt gtgttgggcg ctggaggagt gaatccgacg tcgccggtgt
      841 tggaatcgtc aagcgcgacg gcgaaaggaa agaagtcgca gatagtgttg atgccgaccg
      901 acatgccggc gacagcgctc ttcgactcgg tcaaactggg agcgccccaa actctcgccg
      961 aaaacaacat cgggctggcc acgtccatcg tcgttacacg gacgaagcga tagttcaagg
     1021 catttgcttg cgcggtagcg gcactaacgt aaggcccgtt tagattgacg gcgaattcca
     1081 cgttcaccga ggggatactt acagtcgcat cgttaaaacc gtagttgtta acgatagcgg
     1141 tagcgcgcga gacggcatca gtaattccac cggccccgga gctcaattcg cgggccgctg
     1201 aaagagcagc ggcatcggct gcgttctgca attccgttcg cagcatgtag agccgtgcta
     1261 cgtcgatgca gagagctacg gcgagaatga tcccggccat cagaatggcc gtcatgatca
     1321 tcacgctgcc gcgttgattc cgattcttcg gtaattgcgt tctggttact gtttcgttac
     1381 tcatgccggg ttactccttg ttagtgctcc ccagagtcag gagcggtccg caacgtctgc
     1441 tacgttgcgg accgtaatgc cgtgcgcccg ccgtcagacg gatggatcgc tactgattgg
     1501 gcgtagcctt agtcggggct gctgcggccg gcgccgaagt tcccaacgtt tcaaccttgg
     1561 ctccggtcgt tgccggcgag gttgttttcg gacccgctgg cggtgccgct ggtgtacccg
     1621 gagtggtgct gaaaccactt ggtccaatca gggtcgcgcc actcttcggc tcgactccca
     1681 acagtgaacc attcttcaag ctgtccacat tgggaagcga cggcaggtcg tcacgattga
     1741 ccggtttcac cagttgcgcg gtgacgataa acatcaactc ggattcgttc ctttgaaaac
     1801 ttcgcgaacg gaacagctgt ccgagaaccg gaatatcgcc aatgccgggc accttcgaaa
     1861 gcgtctgcgt ttcgttgttg tcgagcagtc ccgccaatgc gaagctctgg ccgtcacgca
     1921 gttcgattcc cgtcttagcg cgtcgtgttc tcagagccgg aatggagaaa ccctcgaacc
     1981 ggacgccgtt agcgaaatcg agcgtggaaa cctcgggctc gagctccagg cggatgtgat
     2041 cttcgtcgat gatggtcggc ttgaagttga gacgtacacc gtattccttg aagatgatcg
     2101 tcacggtgtt gcggtcgccg cccgactgga ccacgggaac cggatattcg ccacccgcga
     2161 ggaaactggc ttcctgccca ttcatcgcga tcaggtttgg ctccgccagc gcgcgtaacg
     2221 caccctgttc ctggagggct ctaataaagg acagcgtgtt gccgcccatc acgaacaggt
     2281 tcaacgtgtt cgcgatgtta ccggttagaa ggccgcccgc aacgtcgccc aacgagcttg
     2341 ggccactgcc gctattgatg taaccgccgg ttccgggtga gccctggtaa ccccacgaag
     2401 taccgagctc gcgcattctt ttacggctga cttccgcgac tcgcacctgg agttgaacct
     2461 gcgtcgcact cttaacaggc gactcgagca ggttgacagt cttgaatccc gcggcctgga
     2521 ccactgcttc agcgtgcgtc gcaattctcg gatcgctgac atttcccgaa aggaccaccg
     2581 agccattcgc ctggcttaga cggatgtcgt cttttggaaa gagtgccctg atctgcgaat
     2641 cgatgagcga aaggttcgtg cgcacgtaaa cgtcgaaaac gacgaagcgg ctggaacctt
     2701 tttcccacgc gatgaagttg atttgaccaa aagtcttacc gttaacaacc acctggttcg
     2761 aggtcaccag gaccgcttcg gcgatctcag gattggaaac tgagaatcgt tcgatgggac
     2821 ggtcgaaggt cagcaacctt gattggccaa ccaggacgtt gacgggaatc ggttccttcg
     2881 agtcagagcc aaacgacgcg ttggtgctca tctcctgagc cgcggcgttc agcggaaagg
     2941 caaagagaaa aactgttaga gtgaggatga cgttgcgcac agcagaacag ggcttcatgg
     3001 cttcttgact ccttgttggt tgaaactgtt tcgtagaaaa ctgacgaggg gatg
//
LOCUS       DASWTX010000585         2861 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_159830, whole genome shotgun sequence.
ACCESSION   DASWTX010000585 DASWTX010000000
VERSION     DASWTX010000585.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2861)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2861)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2861
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159830"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1005)
                     /locus_tag="VGD38_08930"
     CDS             complement(<1..1005)
                     /locus_tag="VGD38_08930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728178.1"
                     /translation="MKTLQRHHSPARTSLLLTLSTIILFGCSQQTLAQQRDGDAPETT
                     SSSAPSGRVNFDIIQLLNGEYLEMFGSGSSSGRLQGHPSIPGVELSTTTAHPLMFSTS
                     GVERMRIAANGFVGIGINNPATPLEMYSPAAFSYSPTSSQPARIRLINNTTTANNAFE
                     IALGAVDNNNVPSSIVRLVGIMTNHTPGLTAGDFAIGLRNGGALFESARFASNGNVGI
                     GTMTPAYKLDVAGQVRSSSGGFVFPDGTVQTTASFGGGGGSQWTTSGANIYYNSGNVG
                     IGTTTPAVALDLSQNKAIRVGNAYLSSGGNYVHLANNAWYSAAIGWQFDGVPGALYQI
                     N"
     gene            1246..1650
                     /locus_tag="VGD38_08935"
     CDS             1246..1650
                     /locus_tag="VGD38_08935"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY0728179.1"
                     /translation="MSIEVRGVCVLLQVFDMPASVRFYRDVLGFEVVQTSVREGDQFD
                     WGMLRLGEATLMLNTAYEQEYRPPQPDKTLIAAHGDTCLYFGCPDVDAAYRHLLDHGV
                     EVEEPKVAPYGMKQLYLHDPDGYALCFQWPAE"
     gene            1698..2525
                     /locus_tag="VGD38_08940"
     CDS             1698..2525
                     /locus_tag="VGD38_08940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728180.1"
                     /translation="MAIVLLCTLLPFLPGGYDSLSVAFSEMAHMFGVVGLLLVPVGLI
                     WLAANRSPRLAGKRHLFPLLALIASTLVWLAVWLAALVQSGYVLSVMVVLLWVWGLRR
                     AWSTFRQGAPTPDGSSAASSRASALPFYLIAVPVAVALLQWAVVNRAVEMSRNRAIAN
                     SAPLIAAIEEYRNRNGRYPTSLLAEWPDFKTGVTGIRQYYYEPHADAYNLVFEQFNYR
                     FGTREFVVYNPRDEHVMTAHAIDILEMTPDQLILERTRGHHSHHDLPQPHWKLFWFD"
     gene            2563..>2861
                     /locus_tag="VGD38_08945"
     CDS             2563..>2861
                     /locus_tag="VGD38_08945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728181.1"
                     /translation="MKAKLSLTILFLLSGTATAFGQTVSAIEMSTDYTSDGQVCQMKL
                     FPKRVGPNTDYLSHQLPFQEVKLILNRLIPPMARGNKGELFGYTDTGGGMAWTTYP"
BASE COUNT          562 a          755 c          860 g          684 t
ORIGIN      
        1 attgatctga tacagagcgc cgggaacacc gtcgaactgc catcctatag cggcgctgta
       61 ccacgcgttg ttggcgagat gaacgtaatt gccgcctgaa ctcaggtagg cattgccgac
      121 acgaatcgct ttgttttgac tgaggtccag ggcgaccgcc ggtgtcgttg tgccgatacc
      181 gacgttgccg gagttgtagt aaatattcgc acccgacgtg gtccattgcg aaccgccacc
      241 gccaccgaag ctcgccgtgg tctgcacggt tccatcggga aacacaaatc cgccgctgct
      301 cgaacgaacc tggcccgcga cgtcgagttt gtaagccggc gtcatggtgc cgatgccgac
      361 gttgccgttc gaagcaaagc gcgcggattc aaacaacgcg cctccgttgc gtaagccaat
      421 ggcgaagtcg cccgcggtga gaccgggagt gtgattcgtc atgatgccga cgagccttac
      481 gatacttgac ggaacgttat tgttatcgac cgcgccaagc gcgatctcga acgcgttgtt
      541 ggccgtcgtc gtgttgttta tcaggcgaat ccgcgcgggt tgggaagagg tcggtgaata
      601 tgaaaacgcc gcgggggaat acatttccag cggagtcgcc ggattgttga taccgattcc
      661 cacaaagccg ttcgcggcaa tgcgcatgcg ctcgacgccg ctggttgaaa acatcaacgg
      721 gtgtgcggtg gttgtgctca gttcgacgcc ggggattgac ggatgtccct gcagtctgcc
      781 gctgctggaa ccggagccga acatctcgag atattcgccg ttcagcagtt gaatgatgtc
      841 gaaattgact cttccgctgg gcgcgctact ggacgtggtt tcgggggcgt cgccgtctcg
      901 ttgctgggcc agcgtctgct gtgagcagcc gaacaaaatg atcgtcgaga gggttaacag
      961 taagctcgtg cgggcaggac tgtggtggcg ctgtagcgtt ttcatctcgt acctcttttc
     1021 aagagtgttt tgggccagtt caggtgctcg aattcaacct tgggaggagc tttctttact
     1081 caaaggtggg gtcaacttat aatccgcact tctttggaag tgccgccgtt cccactgttt
     1141 ggacatcctc atcaactata cgcgtcaaaa tattcggaaa gctttcatga aagttttggg
     1201 aacttgcacc tgtgagggaa gttcaaggga gttaagaaat aaaacatgag tatcgaagtg
     1261 cgtggggttt gcgttctgct gcaagtcttc gacatgccgg cgtctgtccg cttctatcgt
     1321 gacgtgctgg ggtttgaagt ggtccagacg tcagtgcgtg agggcgatca gtttgactgg
     1381 ggaatgttgc ggctgggtga ggcgacgctg atgctgaata cggcttacga gcaggagtat
     1441 cgtccgccgc aaccggacaa gacgctcata gccgcgcatg gcgacacctg tctttacttt
     1501 ggctgtcctg acgtcgatgc tgcgtatcgc catttgctgg accacggtgt tgaggttgaa
     1561 gagccgaaag tcgcgccgta tgggatgaag cagttgtacc tgcacgatcc ggatggttac
     1621 gcgctgtgtt tccagtggcc cgctgagtga aactgaacaa tatgttcctc cgacacttac
     1681 ttggcatcgt ggtgacggtg gctatcgtcc ttctgtgcac cttgctgccg tttcttcccg
     1741 gcgggtatga cagcctgagc gttgcgtttt ccgagatggc gcacatgttt ggcgttgtcg
     1801 ggttgctgct ggttccggtt ggactgatct ggctggcagc taatcgctcg ccgcggttgg
     1861 ctggaaaacg tcatctgttt ccgctgctgg cgctgatcgc gtccacgcta gtgtggcttg
     1921 ctgtctggtt ggcggcgctc gtgcagagtg gttacgtgtt gagtgtgatg gttgtgctgt
     1981 tgtgggtttg ggggttgcga agggcgtggt ccacgttcag gcaaggtgct ccgacgccgg
     2041 atggatcgag cgcggcgtcg agtcgtgcca gtgctcttcc cttctacctg atcgccgtgc
     2101 cggtcgcggt tgcgttgtta cagtgggcgg tggtgaatcg cgcggtagag atgagccgta
     2161 accgtgcgat tgctaacagc gcaccgctga tcgccgcgat cgaagagtac cgcaaccgca
     2221 acggccgtta cccgacctcg ctgctggcgg agtggcccga ctttaaaacc ggcgtcacgg
     2281 gcattcgcca gtattactac gagccgcacg ccgacgccta caacctcgtc ttcgaacagt
     2341 tcaactatcg cttcggcacc cgcgagttcg tcgtctacaa cccgcgtgac gagcacgtca
     2401 tgacggccca cgccatcgac atcctcgaaa tgaccccgga ccaactcatc ctcgagcgca
     2461 cccgcggcca ccactcccac cacgatctac cccagccgca ctggaaattg ttttggtttg
     2521 attagcgatt gaggtagatt gaggaagcgg aggcttattc ttgtgaaagc aaaactcagt
     2581 cttactatcc tgtttcttct ttctggtacc gccaccgcgt ttgggcaaac agtttcggcg
     2641 atcgaaatgt ccactgacta cacatcggat ggtcaggtat gtcaaatgaa gctgtttccg
     2701 aaacgagtgg gaccaaacac agactacctt tcgcatcaac taccatttca agaagtgaag
     2761 ttgattttga accgactcat accaccgatg gcccgaggca acaagggaga gttgtttggt
     2821 tacactgata cgggtggagg catggcctgg accacgtatc c
//
LOCUS       DASWTX010000586         1922 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_223554, whole genome shotgun sequence.
ACCESSION   DASWTX010000586 DASWTX010000000
VERSION     DASWTX010000586.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1922
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223554"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..894
                     /locus_tag="VGD38_08950"
     CDS             <1..894
                     /locus_tag="VGD38_08950"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY0728182.1"
                     /translation="GTTVEIAGAPKLPPEQELKTGVCVTDANYFPTMQIPLLRGRLYT
                     QQETTEMRHVVLVNETFVKKNLGGEDPLGKRLIIYMKQENVPTEIIGVVADNKHLGLD
                     TAVDPMVYWPHAELAFGGMTLMLRTTGDANAVAPAARGVIRGLDPQQPIGAVTTMNDL
                     LSVSVARARFSASLLTVFSIVALVMAAVGIYGVMSYIVLQRTHEIGVRMALGAQRFDV
                     LKLVVKKGIVLGVVGVAVGLAASFALTRLISTLLFEVTATDKTTFAVVSLGLFVITLL
                     ACFVPARRATKVDPMKALRYE"
     gene            897..>1922
                     /locus_tag="VGD38_08955"
     CDS             897..>1922
                     /locus_tag="VGD38_08955"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0728183.1"
                     /translation="MQNLIKDVRYGIRMLTKNPGVTLVAVITLGLGIGANAAIFSGVN
                     AFLLKPLPVPRASELIRPLEIAEDRELNDEMSYPDFLDYRAQSTSVAIAAEDMVPAAI
                     DTENQNDVIWGQVVSANYFDVVQVNPILGRTFAPDEDKTIGGSPVLVLGHSLWQRRFG
                     SDANIVGKKVRLNNRQYEVIGVAPEYFTGTKFALSLDFWTPISMAEELRRSPKLLEDR
                     GSHWMNVIGRLKPGFTLDQASAELSGIATRINEAYPNERASGTQALVMTETDGRFEDL
                     GGVFKSGGAIAMAIVGLILLIACANVANLMLARAAARRQEMSVRLALGASRLRLGCQL
                     FAESLLLA"
BASE COUNT          359 a          487 c          650 g          426 t
ORIGIN      
        1 ggtacaaccg ttgaaatcgc cggcgcgcct aagttgccac ctgagcagga acttaaaacc
       61 ggagtttgcg taactgatgc taactatttt ccgacgatgc agattccgtt gcttcgtggg
      121 cggctttaca cgcaacagga aacgacggag atgcgtcacg tcgtgctggt gaacgagacg
      181 tttgtgaaga agaacctcgg cggtgaagac ccgttgggca aacgcctcat catttacatg
      241 aagcaggaaa acgtgccgac ggagatcatc ggcgtggtcg ctgataacaa acatctcgga
      301 ctcgatacgg cggtcgaccc gatggtctat tggccccacg cggagctcgc tttcggcgga
      361 atgacgttga tgctaaggac cacgggcgat gcgaacgccg ttgcgcctgc tgcgcgcggt
      421 gtgattcgcg ggcttgatcc acagcagccg atcggcgctg ttacgacgat gaacgatctg
      481 ctttctgtgt cggtggcgcg ggcgcggttc agcgcgtcgt tgttgacggt gttttcgatc
      541 gtcgcgctgg tgatggccgc ggtcgggatt tatggcgtga tgtcctacat cgtgttgcaa
      601 cgcacacacg agattggcgt tcgcatggcg ctcggcgcgc aacgcttcga cgtgctgaag
      661 ctggtggtga agaagggaat cgtgttgggc gtcgtcggtg ttgcggttgg tctggctgcg
      721 tcgtttgcac tcacacgatt gatctcgacg ttgttgtttg aagtgacggc gacggacaag
      781 acgacgtttg ccgtcgtttc gctcggattg tttgtaatca cgctgctggc gtgttttgtg
      841 ccggcgcgcc gcgcgacgaa ggtcgatccg atgaaggccc tgaggtacga ataatcatgc
      901 aaaacctaat caaagatgtt cgttacggca ttcggatgtt gacgaagaat ccgggtgtga
      961 cgctcgtcgc agtgatcacg ctgggcttgg gcatcggcgc caacgcggcc atcttcagcg
     1021 gcgtgaatgc gtttttgctg aagccgctgc cggtgccgcg ggcgagcgag ttgatccggc
     1081 cgctggagat tgcggaagac cgcgagctca acgatgagat gtcgtatccg gactttctcg
     1141 actatcgcgc gcaaagcact tcagtggcga tcgcggcgga agacatggtc ccggcggcga
     1201 tcgacactga gaaccagaac gacgtcattt ggggtcaggt cgtttcggca aactacttcg
     1261 acgtggtcca ggtgaacccg atcctcgggc gaacgttcgc gccggatgaa gacaagacga
     1321 ttggcggcag tcccgtgttg gtgttgggcc acagtctctg gcagcggcgc tttggttcgg
     1381 atgcaaacat cgtcggtaag aaggttcggt tgaacaaccg gcagtacgaa gtgattggcg
     1441 tggcgccgga gtatttcacc gggacgaagt ttgcgctgtc gctggatttc tggacgccga
     1501 tctcgatggc ggaagagctg cggcgctcgc cgaagctgct cgaggatcgc ggcagtcatt
     1561 ggatgaatgt gattgggcgt ttgaagcctg ggtttacgtt ggaccaggcc tcggcggaat
     1621 tgtcggggat cgcgactcga atcaacgagg cgtatccgaa cgagcgcgcg agcggcacgc
     1681 aggcgctcgt gatgaccgag accgacgggc gttttgaaga cctgggcggc gtgttcaaga
     1741 gcggcggcgc gatcgcgatg gcgatcgttg gactgatact gctgatcgcg tgtgcgaatg
     1801 ttgccaactt gatgttggcg cgtgccgcgg cgcggcgtca ggaaatgagc gttcgtctcg
     1861 ctctgggcgc gtcccgcctg cgtctcggct gtcagctgtt tgccgaaagt ctcttgttgg
     1921 ca
//
LOCUS       DASWTX010000587         1938 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_245339, whole genome shotgun sequence.
ACCESSION   DASWTX010000587 DASWTX010000000
VERSION     DASWTX010000587.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1938)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1938)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1938
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245339"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(186..752)
                     /locus_tag="VGD38_08960"
     CDS             complement(186..752)
                     /locus_tag="VGD38_08960"
                     /inference="COORDINATES: protein motif:HMM:NF023249.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3341 domain-containing protein"
                     /protein_id="HEY0728184.1"
                     /translation="MTRPPLVHHRRHAPPLYGVIAEFEGPNELVHAAEEVYKAGYRRI
                     NGYSPYPIEELSEAIGFTHTSLPLIVFIGGLVGGITGFLMQYWIGVIDYPLNVGGKPY
                     NSWPAFIPITFEMTVLFAAFSAVLGMLVLNKLPQPYHPVFNAPNFALATRDRFFLAVE
                     ANDPKFDHDAVVDLLKSLNAIEVSDVEV"
     gene            complement(756..>1938)
                     /gene="nrfD"
                     /locus_tag="VGD38_08965"
     CDS             complement(756..>1938)
                     /gene="nrfD"
                     /locus_tag="VGD38_08965"
                     /inference="COORDINATES: protein motif:HMM:NF015851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NrfD/PsrC family molybdoenzyme membrane anchor
                     subunit"
                     /protein_id="HEY0728185.1"
                     /translation="VFVGLGLWGVTVPVAWGVDILNVVWWIGIGHAGTLISAILLLLR
                     QRWRTSINRFAEAMTLFAVAQAGMYPIFHLGRPWLMYWLFPYPNTMGIWPQFRSPLMW
                     DVFAVSTYATVSAMFWFVGLIPDFATLRDRARSKPFQMLYGLLAMGWRGSARHWHRYE
                     MAYLLLAGLATPLVLSVHTIVSFDFAVGIIPGWHATIFPPYFVAGAIYAGFAMVLLLT
                     IPLRRFYGLEGFITMRHMHNMAKVMLATGLIVGYGYIMEAFFGWYSGNKYERFMIWNR
                     MHGPYSLYYWALILCNIIAPQFLWIKKVRSNLIALWIISFVVSIGMWLERFVIVVTSL
                     HRDYLPSSWGMYQPTTWDWGMFIGTIGFFFTLLFLFIRFLPMISIFEMRTILPEAEVE
                     E"
BASE COUNT          463 a          603 c          555 g          317 t
ORIGIN      
        1 cggaatcggt gcgcagaaat ccgcgcggca ccgtgccctc aaccggcggg cggctcgaca
       61 gcccgtcgcc aaagaacgac gtcccgcgat acggcttcat cttgggctgg tcctgcatgt
      121 cgtgccggca ccccgcgccc gcgaggcaca cggccgccaa caggacgcct atcccaaatt
      181 tattcttaga cctcgacatc actgacttca atcgcgttca aactcttcaa caaatccacc
      241 accgcatcgt ggtcgaactt cggatcgttt gcctcaaccg cgagaaagaa ccggtcgcgc
      301 gtcgcaagcg cgaagttcgg cgcgttgaaa accgggtgat acggttgcgg cagcttgttc
      361 agcaccagca ttcccagcac cgcggagaaa gccgcgaaca gcaccgtcat ttcaaatgtg
      421 atcgggatga aagccggcca actgttgtag ggcttaccgc cgacgttcag cggatagtcg
      481 atcacgccga tccagtactg cattaaaaac ccggtgatcc cgccaaccag gccgccgata
      541 aacacgatca gcggcaggct cgtgtgcgtg aatccgatcg cttcggaaag ctcttcgatc
      601 ggatacggcg agtagccgtt gatgcggcgg taaccggcct tgtaaacctc ttcggccgcg
      661 tggaccaact cattcggacc ttcaaactcc gcaatcacgc catacagcgg cggagcatga
      721 cgccggtgat gaacgagtgg cggacgagtc atcgcttatt cctccacctc cgcttccggc
      781 aggatcgtgc gcatctcaaa aatcgaaatc atcggcagga acctgatgaa caggaacagc
      841 agcgtaaaga agaaaccgat cgtgccgatg aacatgcccc agtcccacgt cgtcggctga
      901 tacatgcccc acgacgacgg cagataatcg cggtgcaaac tcgtcaccac gatcacgaac
      961 cgctcgagcc acatgccgat actcacgacg aacgaaatga tccacagcgc gatcaggttc
     1021 gagcgcacct tcttgatcca caaaaactgc ggcgcgatga tgttgcacag gatcagcgcc
     1081 cagtaataaa ggctgtacgg tccgtgcatg cggttccaga tcatgaagcg ttcgtacttg
     1141 ttgccgctgt accagccgaa gaacgcctcc atgatgtagc cgtagccgac gatcaggccg
     1201 gtcgcgagca tcaccttcgc catgttgtgc atgtggcgca tggtgatgaa gccttcaaga
     1261 ccgtaaaaac gcctcagcgg aatcgtcagc agcagcacca tcgcgaagcc cgcgtaaatg
     1321 gcgccggcga cgaagtacgg cgggaagatc gtggcgtgcc agccgggaat gatgccgacg
     1381 gcgaagtcga aactgacgat cgtgtgcact gaaagcacga gcggcgtggc gagaccggcg
     1441 agcagcaggt acgccatctc gtagcgatgc cagtgtcgcg ccgaaccgcg ccaacccatc
     1501 gcgagcaggc cgtagagcat ttgaaacggt ttgctgcggg cgcgatcgcg cagtgtcgcg
     1561 aagtcgggga ttagaccgac aaaccagaac atcgcggaaa cggtcgcgta cgtcgacacc
     1621 gcgaacacgt cccacatcaa cgggctgcga aactgcggcc agattcccat cgtgttcgga
     1681 tacgggaaca gccagtacat caaccacggg cgcccgaggt ggaaaatcgg gtacatgccc
     1741 gcctgggcga cggcgaacag cgtcatcgct tcggcgaagc ggttgatcga cgtacgccat
     1801 cgttgtcgca acagcaggag gatcgccgag atcagcgtgc ccgcgtgacc gattccgatc
     1861 caccagacga cgttgagaat gtccacgccc caggcgaccg gaacggtgac gccccacaag
     1921 ccgagaccga cgaacacg
//
LOCUS       DASWTX010000588         2460 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_335520, whole genome shotgun sequence.
ACCESSION   DASWTX010000588 DASWTX010000000
VERSION     DASWTX010000588.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2460
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335520"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..956)
                     /locus_tag="VGD38_08970"
     CDS             complement(<1..956)
                     /locus_tag="VGD38_08970"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEY0728186.1"
                     /translation="MNNTTAADLFNVRSHNPSFFSVQESAVYKGPLVDFCIPVNLHFP
                     PPQMVQRIGERLPEILRYYPDYAEVHAKYIGEIAGVPAECIVPANGSTEIITRLCHLR
                     RGPILTPIPTFSRWTDLPDELGISLHTIEHDVGRNFRLEVGELVSRVREFAVRMLVIS
                     NPNNPTGAWFEAAEIEELVLSLPEVELIVIDESFLDFSDLESAVTLIPRARNLVVVKR
                     LGKSLGWHGVRLGYAAMNPRAAELLRSQLPFWNVNGLAAYILKNLSEFKDEFRQSLAL
                     VAQDRTYMLNQLERVPGLRVFSSKANFLYVELPPHVPGRKLR"
     gene            complement(1163..>2460)
                     /locus_tag="VGD38_08975"
     CDS             complement(1163..>2460)
                     /locus_tag="VGD38_08975"
                     /inference="COORDINATES: protein motif:HMM:NF027637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HEY0728187.1"
                     /translation="LAARGMDPNGSEADKFIKDFLRAISAHEVGHTLGLRHNFRASTI
                     HSFEQAQDAGVTARDGLTGSVMDYIPTNIAARGGRQGEYHQSTLGPYDYWAIEYAYKP
                     IDAPTMEAEQAELRKIASRAAEPQLAYDTDEDAGFGPGLDMDPVVNRFDLGTDPLKYY
                     THRVGLAREIWTNMEQRLEKPGEGYQVLRRSFNSALGQTANSLFLTSKYIGGMYHYRS
                     HVGDPGNRLPFEPVPADKQKQALALLRDNLFAPTAFQFKPQLLNKLENERFIDFNTFT
                     PGRMDVPVHQVVFNLQRQVLDRIFLPTVLSRIQDSELRVTPPVEPFTLGLLFTEIQDS
                     IWAETKGQGVSLNINSHRRSLQREHLRKMIGMVLRDAAVPEDARTLARQSLVTLRGQL
                     QRTVSRPGLNTSLEVRGHLNESIARIDEALKGGIQRTAF"
BASE COUNT          568 a          705 c          647 g          540 t
ORIGIN      
        1 tccctaagct tgcgcccggg tacgtgcggc ggcaattcaa cgtacagaaa attcgccttc
       61 gaagaaaaca cacgcaaacc cggcacgcgt tcgagttgat tcagcatgta cgttcggtct
      121 tgtgcgacaa gagcgaggct ttgccggaat tcgtccttaa actctgacag gtttttgaga
      181 atgtatgcgg ctaatccatt cacgttccaa aacggcagtt gtgatctgag tagttcggcc
      241 gctcgcggat tcatcgcggc gtaaccgagt cgaactccat gccaccccaa cgacttaccc
      301 aacctcttca ccaccacaag gttccgcgct cgcggtatca acgtcaccgc gctttcgaga
      361 tcagaaaaat caaggaacga ctcatcaatc acgatcagtt ctacttccgg caagctcagc
      421 acgagctctt caatctcagc cgcttcaaac cacgcgccgg ttggattgtt cggattcgaa
      481 atcaccaaca tcctcacagc gaactcgcgg acgcgcgaaa ctaattcccc aacctcgaga
      541 cgaaagtttc tcccaacgtc atgctcgatc gtatgcagcg aaataccgag ttcatcaggc
      601 agatccgtcc agcggctaaa cgtcgggatc ggcgtgagta ttggaccacg cctaaggtgg
      661 cacagacgcg tgataatctc cgtcgaacca ttcgccggca cgatgcactc agccggaaca
      721 cccgcaatct caccaatgta tttcgcgtgc acctcggcgt agtccggata gtaccgaagg
      781 atttccggca aacgctcgcc gatgcgttgg accatttgcg gcggcggaaa gtgcagattt
      841 accggtatgc aaaagtccac cagcggacct ttgtaaaccg cgctctcctg gaccgaaaaa
      901 aaggacgggt tatgcgaacg tacgttaaag agatctgcgg ctgtagtgtt gttcatatcc
      961 actctccttt agtttgacga gtaaccagcg attttcttcc gttgaaagag ttgtttattt
     1021 gacttgagca acggaggaga gtggtggtgc gggtaaagaa cgcatgagag ttcgccggct
     1081 tgcgtggaaa agtgaaagaa ataattcagc ctcaagagtc agaagcgagg cctgactctt
     1141 gaggccgaag tggtgttaca aactaaaacg ctgtccgctg gataccgccc ttcaacgcct
     1201 cgtcgatgcg ggcgattgat tcattcaaat gcccacggac ctcgagagac gtgttcaaac
     1261 caggcctcga aacggttcgc tgcaattgcc cgcgaagcgt tacaagactt tgacgcgcca
     1321 aagtgcgcgc gtcttccggc accgcggcat ctcgcaatac catcccgatc atcttgcgca
     1381 ggtgttcgcg ttgcaacgaa cgccgatgac tattgatgtt gagcgacacc ccctgccctt
     1441 ttgtttccgc ccagatcgag tcctgaattt ccgtaaacag caaacccaga gtaaacggct
     1501 cgaccggcgg cgtaactctc agttccgaat cctgaattcg gctcaaaact gtcggcagga
     1561 aaattcgatc caacacttgc cgctgcagat tgaagaccac ctgatgaacc ggcacgtcca
     1621 tacgtcccgg cgtgaacgtg ttgaagtcga taaagcgctc gttctccaac ttgttgagca
     1681 gttgcggctt gaattgaaat gccgtcggcg caaacaagtt atcgcgcaat agcgccagcg
     1741 cttgtttttg tttgtctgcc ggtaccggtt cgaacggcaa acgattgccc ggatcgccga
     1801 catggctgcg gtagtgatac atgccgccga tgtacttcga cgtcaggaac agcgaatttg
     1861 ccgtctggcc gagagcggaa ttgaagctgc gcctcaacac ctgataaccc tcgcccggtt
     1921 tctccagccg ttgttccatg ttggtccaga tttcacgagc cagcccaacg cggtgcgtgt
     1981 agtacttcaa cggatcggtg cccaggtcga aacggttgac caccggatcc atatcgagtc
     2041 ctggaccaaa ccctgcatct tcgtcggtgt cgtaggccag ttgcggctcg gcagcgcgtg
     2101 aagcgatctt gcgcaactca gcttgctcgg cttccatcgt cggcgcgtcg atcggtttgt
     2161 aagcatattc gatcgcccag tagtcgtatg gaccaagggt ggattggtga tactcaccct
     2221 gtctgccgcc acgcgccgcg atgttggtcg gaatgtaatc catcaccgag ccggtgagcc
     2281 cgtcgcgtgc agtaacgccg gcgtcctgcg cctgctcgaa actatgaatc gtgctggcgc
     2341 ggaagttgtg acgaagtccc aacgtgtggc ccacttcgtg agccgagatc gcacgcagga
     2401 aatccttgat gaacttgtca gcctcggaac cattcgggtc catgccgcga gccgccagga
//
LOCUS       DASWTX010000589         7153 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_418818, whole genome shotgun sequence.
ACCESSION   DASWTX010000589 DASWTX010000000
VERSION     DASWTX010000589.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7153)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7153
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_418818"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(23..784)
                     /locus_tag="VGD38_08980"
     CDS             complement(23..784)
                     /locus_tag="VGD38_08980"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY0728188.1"
                     /translation="MRLTFLGTGTSTGVPSIGCDCETCTSDDPRDKRLRVSVIIEHAG
                     RTILVDTSSDFRQQALRFGLKQLDAVLITHCHADHIFGLDDIRPLNFRFGALGVYANE
                     RAWVDIKRIFKYIFEPTYYGGGLPQVIPYTVFHRAPFCVGPDLQITPLEVIHGRLPVM
                     AYRFNDFAYLTDLSEIPAETIDSLQGLDVLVLDCLRFREHPTHLWVDRALEYIELINP
                     RRTFFTHIAHDIKHGRDSARLPAHVEFAYDGLVVE"
     gene            complement(781..1323)
                     /locus_tag="VGD38_08985"
     CDS             complement(781..1323)
                     /locus_tag="VGD38_08985"
                     /inference="COORDINATES: protein motif:HMM:NF020473.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1844 domain-containing protein"
                     /protein_id="HEY0728189.1"
                     /translation="MSDDQPTYKVTDRRLFNADGSPRDLPPEEKPEPKPEPVAAPVET
                     PAASGAQAEAAAAPQPTVEVTEVPDDDEDFTPEELAEARDPAGFISFIMSIASNAASA
                     LGMMEHPVTHAREVDVELGKHWIDVLGMLQKKTAGNLSNKEKQMLDGFLSDLRMQYVS
                     LVNAAPRSPRFSGSDITGGR"
     gene            1368..2189
                     /gene="mazG"
                     /locus_tag="VGD38_08990"
     CDS             1368..2189
                     /gene="mazG"
                     /locus_tag="VGD38_08990"
                     /EC_number="3.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF007113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
                     /protein_id="HEY0728190.1"
                     /translation="MPTTFNDLVNLMERLRSPNGCPWDREQTYATLAPMLLEEAYEAF
                     EAVEEAREGKPAELRDELGDLLFQIVFYAQVAKERGEFNIDDVIGAIHDKMVRRHPHV
                     FGDVTAEDSATVLLNWETMKAEERRAAGRTEDVKTSLLNGVSSKAPALMEAHQLSTKA
                     ARVGFDWKSVDDIFDKLQEEIEELRHAIRDHSNLQDEANHARVREEIGDLLFAATNIA
                     RHMQVEPEAALKLTNRKFRRRFAYIETSLHDRGQAFDATSIDELEELWQKAKTTD"
     gene            complement(2186..3535)
                     /locus_tag="VGD38_08995"
     CDS             complement(2186..3535)
                     /locus_tag="VGD38_08995"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEY0728191.1"
                     /translation="MPLSVAAQTQLKYRSNRFSIQDDVKLGRQAAQEAEQQFPLLNDA
                     EVQNYVERVGERLVAAIPSQFQHPEFDYYFKVVNARDINAFALPGGPMYVNRGMIEAA
                     RTEGEMAGVMAHEISHVALRHGTAQATKGQKYGTLAAIAGIAGTIFGGPGVGQLAQAP
                     FAVYLLKFSREYETEADILGAQIMARAGYDPRDLANMFRTIQQQGGGSSGGFLSSHPS
                     PNDRYARINREAQMLQVGAPVRESREFARIQERLGRYGTAPTMAEISRSGQRYPSGEN
                     TSYPSNMPSGRVASPSSRYQNVSIFNGGVRVNVPSNWRQINEGNSVWFAPEGGYGSVN
                     GQAIFTHGTNFGVAQTNNRNLQRATDEIINSFAQGNRNLRATGNYQRTTIDGRAALWA
                     TLTNVNEATGRPETIRLITTQLSNGQVLYMVAVTPQGERNFDNAFNQVLSSVRINDR"
     gene            complement(3726..4436)
                     /locus_tag="VGD38_09000"
     CDS             complement(3726..4436)
                     /locus_tag="VGD38_09000"
                     /inference="COORDINATES: protein motif:HMM:NF021221.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4870 domain-containing protein"
                     /protein_id="HEY0728192.1"
                     /translation="METKKSKYDTNPLDPDVERKADESWGGGNPTQQVGRETRQVGQH
                     PTPEQAANPDARQNRHSEAPTRRYENPPIEASYPSVFVPPTYAPPAQYQQNPYQQPGT
                     NPYINPLSHTPTSRPVIGLGIPEKWALLLAYAPWVGIVASLVELFLVSRREVQVRFHA
                     SQALALHIAILVISSLLKVVGTLSGSEFGGALFGAATTVFLIISMVRVWKGEPHRIAP
                     LAEPAQWFNDHIEPRSQG"
     gene            complement(4451..4873)
                     /locus_tag="VGD38_09005"
     CDS             complement(4451..4873)
                     /locus_tag="VGD38_09005"
                     /inference="COORDINATES: protein motif:HMM:NF025819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M67 family metallopeptidase"
                     /protein_id="HEY0728193.1"
                     /translation="MPTIRLLREHLDAMIAHAREVAPAECCGLIGGLADNNARTIYRL
                     RNVTANPELGYEAAPEDLFAAQRQMRERGEELLAIYHSHPRAVEPSPSETDVRLAYYP
                     SATYLIVGLGGTEASVKAFSISEREHHWKPVEYEIAGE"
     gene            complement(4876..6684)
                     /gene="aspS"
                     /locus_tag="VGD38_09010"
     CDS             complement(4876..6684)
                     /gene="aspS"
                     /locus_tag="VGD38_09010"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: protein motif:HMM:NF001750.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEY0728194.1"
                     /translation="MLDHLGNLERTHSCGALRASEIGKQVTLMGWVAKRRDFGELTFI
                     DLRDRDGITQVVSNPEVSAAAHAKAKELRGEYVIAVTGKVVMRDANTRNPKIATGDVE
                     VHASELLILNDARTPPFQLDAAPDALASEDLRLKYRYLDLRRPQLQANLHLRHRVTNE
                     IRRYMTAQGFTEIETPILIKSTPEGARDYIVPSRIFPGKFFALPQSPQLFKQLCMIGG
                     MDKYFQIAHCFRDEDLRADRQPEFTQLDVEMSFATLDQIYTLIEGLFASVFKLIGVDL
                     PTPFPRFSFADVMSRYGSDKPDLRIKGLELTDLAPALEGTEFPPFASALSSGGQVKGI
                     VVPGGANLSRKVLDELQEFAKRYGSTALPWIKLGDELSSSLLKALGPDHVVRIAQVAG
                     ADKGDLVLIVAGKPKIVAASLGALRNEVAKREHLIPASVYAPLWVTDFPMFEFHEEDS
                     RYYSMHHPFTSPVDEDLQLLERAVEGGETELLAQIRTKAYDPVINGVEMASGSIRIHR
                     RDVQRLVFKALGMTTEEARERFGFFLDALEYGTPPHGGIAPGIDRLMMVLAGTDNMRD
                     VIAFPKTASAADLMIDAPGAVDPKQLEELHLRVVQD"
     gene            complement(6702..>7153)
                     /locus_tag="VGD38_09015"
     CDS             complement(6702..>7153)
                     /locus_tag="VGD38_09015"
                     /inference="COORDINATES: protein motif:HMM:NF019241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1572 family protein"
                     /protein_id="HEY0728195.1"
                     /translation="LAEKALDQLKDEEYFVTLDEESNSVAVVMKHMAGNMFSRWTDFL
                     TTDGEKPNRNRDYEFVISPETTKDDMRDYWERGWQCVFDALDPLQIEDLEKRVYIRGE
                     EHTVVQAINRQLMHYAYHIGQIVYLAKHFRATNWDSLSIPRNRSIKL"
BASE COUNT         1474 a         2056 c         2086 g         1537 t
ORIGIN      
        1 gtgaaaaaga cgcatgagat ttttattcga ctaccagtcc gtcgtacgcg aactccacgt
       61 gtgcgggcaa tcgcgcggag tcgcggccgt gtttgatgtc gtgcgcgatg tgcgtgaaga
      121 acgtgcggcg cggatttatc agttcgatgt attccagcgc gcgatccacc cagaggtgcg
      181 tcggatgctc tcggaaacgg agacagtcga gcacgagcac gtcgagaccc tgcaacgagt
      241 cgatcgtctc ggccggtatc tcgctgagat ccgtgagata agcaaaatcg ttgaagcgat
      301 acgccatcac cggcaggcgg ccgtgaatca cttcgagcgg cgtgatctga aggtccggac
      361 cgacacaaaa cggcgcgcgg tgaaaaaccg tgtaaggaat cacctgcggc agtccaccgc
      421 cgtagtatgt cggctcgaag atgtatttaa agatgcgctt gatatcgacc cacgcgcgtt
      481 cgttcgcgta aacgccgagt gcgccgaaac gaaagttaag cgggcgaatg tcgtcgagac
      541 cgaagatgtg atcggcgtga cagtgcgtga tcagcaccgc gtcgagctgc ttgagtccga
      601 agcgcagtgc ctgttggcga aagtccgacg acgtgtcgac caggatggtc cggccggcgt
      661 gttcgatgat tacggaaact cggagacgtt tgtcgcgcgg atcgtccgag gtacaggtct
      721 cacaatcaca accaatcgac ggcactccgg tcgatgttcc tgtaccgagg aaagtgagtc
      781 tcatctccca ccggtgatgt cactgccgga gaagcgtgga gaccgcggcg cggcattcac
      841 gagcgagacg tattgcatcc gcaaatccga gaggaagccg tcgagcatct gcttctcttt
      901 gttcgagaga ttgcccgcgg tcttcttttg cagcatgccg agcacgtcga tccagtgttt
      961 gcccagctcg acgtcgacct cgcgcgcatg cgtcaccggg tgttccatca tgcccaatgc
     1021 cgatgcggca ttcgaagcga tcgacatgat gaagctgatg aaaccagcgg gatcgcgcgc
     1081 ctcggcgagc tcttccggcg tgaaatcctc gtcgtcgtca gggacttcgg tcacttcaac
     1141 cgtaggctgc ggcgccgctg ctgcctcggc ttgtgcgccg ctcgcagccg gcgtttccac
     1201 aggcgctgcg accggttccg gcttcggctc gggcttctct tccggaggaa ggtcgcgcgg
     1261 actgccgtca gcgttgaaca gccgccgatc cgttactttg taagttggtt gatcgtcact
     1321 catagctcta ttgtgaattt agcctgatgg tagcatagac tactgccatg cccacaacgt
     1381 tcaacgatct cgttaactta atggaacgtt tgcgctcgcc aaacggctgt ccctgggacc
     1441 gcgaacaaac ctacgccaca ctcgcgccga tgctgctgga agaggcgtac gaagccttcg
     1501 aagccgtcga agaagcacgc gaaggcaagc ccgcggagct gcgcgacgag ctcggcgatc
     1561 tgctgtttca aatcgtgttc tacgcgcagg tcgcaaagga acgcggcgag ttcaatatcg
     1621 acgacgtgat cggcgccatt cacgacaaga tggtgcggcg gcatccgcac gtgttcggcg
     1681 acgtcactgc cgaagactca gcaacggtct tgttgaactg ggaaacgatg aaagccgaag
     1741 agcggcgcgc ggcgggcagg actgaagacg tgaagacttc gctgctcaac ggcgtctctt
     1801 caaaagcgcc cgcgttgatg gaagcgcatc agctttccac caaagccgca cgtgttggtt
     1861 tcgactggaa gtcggttgac gacatcttcg acaagttaca ggaagagatt gaagaactac
     1921 gccacgcaat ccgggatcat tcaaatcttc aggacgaagc aaaccacgcg cgggtgcgag
     1981 aggagattgg cgatctactt ttcgcggcga cgaacatcgc gcgacacatg caggtagaac
     2041 cagaagcggc gctgaaactc acgaatcgca agttccggcg ccgcttcgct tacattgaaa
     2101 cttcacttca cgatcgaggt caggcttttg acgcgacctc gatcgatgaa cttgaagagc
     2161 tctggcaaaa agccaaaacc acagattaac gatcgttgat tctcacagag ctcagcacct
     2221 ggttgaacgc gttatcaaaa ttgcgttcgc cctgcggcgt gaccgcgacc atgtacagca
     2281 cctgaccgtt gctgagctgc gtggtaatca acctgatcgt ctcgggacgc ccggttgctt
     2341 cattgacatt cgtcaacgtc gcccacaaag ccgcacggcc gtcgatcgtc gtccgttgat
     2401 aattaccggt tgcgcgtaaa ttgcgatttc cctgagcgaa actgttgata atctcgtcag
     2461 tcgcacgctg caagttgcgg ttgttggtct gcgcgacgcc gaaattcgtg ccgtgtgtaa
     2521 agatggcctg accgttaacg ctgccataac caccttcagg cgcgaaccac accgaattgc
     2581 cctcgttgat ctgtcgccag ttggacggca cattcacgcg cacgccaccg ttgaagatcg
     2641 aaacgttctg ataacgagac gacggagacg caacgcgtcc gctcggcatg ttgctcggat
     2701 agctggtgtt ctcgcccgac ggataacgct gcccgctgcg cgagatctcc gccatggttg
     2761 gagcagtccc gtaacgtccc agccgttcct gaatgcgagc aaactcgcgc gactcgcgaa
     2821 caggagcgcc gacttgcagc atctgggctt cacgattgat acgcgcataa cgatcgtttg
     2881 ggctgggatg gctactcagg aagcctcctg aggatccacc gccttgttgc tggatcgtgc
     2941 gaaacatgtt ggccagatcg cgcgggtcgt aaccagctcg ggccatgatc tgcgcgccga
     3001 gtatgtcggc ttcagtttcg tattcgcggc tgaacttcag caggtaaacc gcaaacggcg
     3061 cctgggccaa ctggcctacg cctgggccac cgaagatcgt tccggcaatg ccggcgatgg
     3121 ctgcgagcgt tccatacttt tgtcccttcg tcgcctgagc cgtaccgtga cgcagcgcaa
     3181 cgtgactgat ctcgtgggcc atcacgccgg ccatctcacc ttcggtacgc gccgcctcga
     3241 tcatcccgcg gttcacgtac attggcccac ccggaagcgc gaacgcgttt atgtctcgcg
     3301 catttacgac tttgaagtag taatcgaatt ccggatgctg aaactgcgac gggattgcag
     3361 ccaccaatcg ctcgccaaca cgctccacgt agttctgcac ttctgcgtcg ttgagcagtg
     3421 gaaactgttg ttccgcctcc tgcgctgcct gacgcccgag tttgacgtcg tcctggatac
     3481 taaatctgtt gctgcgatac ttgagctgcg tctgcgccgc tacggataac ggcatcaccg
     3541 caatagcaat taaagttaac cacgcaatta atggtcgtcg ccttctattc ataccttacc
     3601 tccgacaata agcgctgtaa cccttttccg aaactaatgc accaaatcga aacaggatct
     3661 tcccaaaatc aaggaaatcg ggcgatctta caggcactca tgcaatgaaa atgccaacgg
     3721 agaggttaac cctgcgatcg gggctcgata tggtcgttaa accattgagc cggttccgca
     3781 agaggggcaa tacgatgcgg ctcgcctttc cacacgcgaa ccatggaaat aatcaggaaa
     3841 accgtggtgg cggctccgaa taaggcaccg ccgaactcgc tgccgctgag cgtcccaacc
     3901 actttcaaga ggcttgaaat caccagaatc gcgatgtgca gcgccagcgc ctgcgacgcg
     3961 tgaaaacgaa cctgcacttc gcgccgcgaa accagaaata gctcaaccag cgacgccacg
     4021 ataccgaccc acggcgcata cgcgagcagc agcgcccact tttccggaat accgagtccg
     4081 atgaccggac gcgacgttgg tgtatgtgac agcgggttga tgtatgggtt cgtacccggc
     4141 tgttgatacg gattctgttg atactgcgcg ggcggtgcgt aggttggagg aacaaacact
     4201 gacgggtacg acgcctcgat cggcggattt tcgtatcggc gagtcggggc ttcggaatgc
     4261 cggttttgac gagcgtccgg atttgcggct tgctccgggg ttggatgctg cccgacctgg
     4321 cgtgtctcgc ggccgacctg ctgcgtcgga ttcccgcctc cccacgattc atccgccttt
     4381 cgttcaacgt cggggtcgag tgggttagtg tcgtatttgc ttttcttggt ttccatcctc
     4441 agcccaaatc ttactcgccc gcgatctcat actcaaccgg tttccagtgg tgttcacgtt
     4501 cagatatgga aaacgccttt acggacgctt cagttccccc gagccccacg atcaggtaag
     4561 ttgctgaagg gtaataagct aatcgaacgt cagtttccga aggactcggt tcgacggcac
     4621 gcgggtgcga gtgataaatc gcgaggagtt cctcgccacg ctcgcgcatc tggcgctggg
     4681 cggcaaagag gtcttcgggc gccgcttcgt agccgagttc gggattcgcg gtgacgttgc
     4741 ggagacgata gatggtgcgg gcgttattgt cggccagtcc gccgatgagc ccgcaacatt
     4801 ccgccggagc cacttcgcga gcatgagcaa tcattgcgtc gaggtgttcg cgaagtagcc
     4861 ggatcgttgg catgttcagt cttgaactac gcgcaggtgc agttcttcca actgcttcgg
     4921 atcgacggcg ccgggcgcgt cgatcattag gtcagcggct gatgccgttt tcggaaacgc
     4981 gatcacgtcg cgcatgttgt cggtgccggc gaggaccatc atcaggcgat cgataccggg
     5041 cgcgataccg ccgtgcggcg gcgtgccgta ctcgagcgcg tcgagaaaga atccaaatct
     5101 ctcgcgcgct tcttcggtcg tcatgccgag tgctttgaag acgagccgtt ggacgtcgcg
     5161 acggtgaata cgaatcgagc cgctggccat ctcgacgccg ttgatgaccg ggtcgtaagc
     5221 cttcgtgcgg atctgcgcga gcaattcggt ttcaccgcct tccacggcgc gttcgagtaa
     5281 ctgaaggtct tcgtcgacgg gcgacgtgaa cgggtggtgc atcgagtagt agcggctgtc
     5341 ttcttcgtga aactcaaaca tcggaaagtc ggtgacccac agcggcgcgt agacgcttgc
     5401 gggaatcagg tgctcgcgtt tggcgacttc gtttcttaaa gctccaagac tcgcggcaac
     5461 aatcttcggc ttacctgcca caatcaggac caaatcccct ttgtctgctc ctgcgacttg
     5521 cgctattcgc acaacgtggt cggggccgag tgccttcagt agcgacgacg aaagttcatc
     5581 acccaacttg atccacggca atgcagtcga gccgtaacgc ttcgcaaact cctgtaactc
     5641 gtcgagcacc ttgcgcgaaa gatttgcgcc gccgggtacg acgatgcctt tcacctgtcc
     5701 gcctgaactc aaagccgaag cgaacggcgg aaactccgtt ccttccaaag ccggcgcgag
     5761 atcggtcagc tcgagtccct tgatgcgcag gtcgggtttg tcagagccgt aacgcgacat
     5821 gacatcggcg aaactgaagc gcggaaacgg cgtgggcaga tcgacgccga tcagtttgaa
     5881 gacactcgcg aacagacctt cgatcagcgt gtagatctga tcgagcgtgg caaagctcat
     5941 ctccacgtcg agctgtgtga attcgggctg gcgatcggcg cgcaggtctt cgtcacggaa
     6001 gcagtgcgcg atctggaagt acttgtccat gccgccgatc atgcacaact gcttgaacag
     6061 ttgcggcgac tgcggcaggg cgaagaattt tcccggaaag attcgcgacg gcacgatgta
     6121 gtcgcgcgcg ccttctggcg tcgacttgat caggatcggc gtttcgatct cggtgaaacc
     6181 ctgcgccgtc atgtagcggc gaatctcgtt cgtcacacga tgacgcaggt gcaggttggc
     6241 ctgaagctgc gggcggcgca gatcgagata gcgatacttc aaacgcaggt cttcgctcgc
     6301 gagcgcgtcg ggcgcggcgt cgagctggaa cggaggcgtg cgcgcatcgt tgagaatcag
     6361 caattcactc gcgtgaactt cgacgtcgcc cgtggcgatc ttcggattgc gcgtgttcgc
     6421 gtcgcgcatc acgactttgc cggttacggc aatcacgtac tcgccgcgca gttctttcgc
     6481 ctttgcgtgc gcagcggcgg agacttccgg gttcgagacg acctgcgtga taccgtcgcg
     6541 gtcgcgcagg tcgataaacg tgagttcgcc gaagtcgcgg cgtttcgcga cccagcccat
     6601 gagcgtcact tgcttgccga tttcgctcgc gcgcaatgca ccgcatgaat gcgtgcgttc
     6661 caggtttccg agatggtcca gcatttacaa cttacttctc tctatagttt tatcgaacgg
     6721 tttcgcggga tgctcaaaga gtcccagttg gtggcgcgaa agtgcttcgc caggtagacg
     6781 atctggccga tgtgatacgc gtagtgcatc agttggcgat tgatcgcctg cacgactgtg
     6841 tgctcttcgc cgcgaatgta cactctcttc tctaaatctt cgatctgcaa cgggtcgagc
     6901 gcgtcgaaga cgcattgcca gccgcgctcc cagtaatcgc gcatgtcgtc tttggtcgtt
     6961 tcgggactga tgacaaactc atagtcgcga ttgcggttcg gtttctcgcc gtcggtggtc
     7021 aggaaatcgg tccaacggga aaacatgttg cccgccatgt gtttcatcac gaccgcgacg
     7081 ctgtttgatt cttcgtccag tgtgacgaag tactcctcat cctttagctg gtcgagtgct
     7141 ttctcggcga gct
//
LOCUS       DASWTX010000590         3606 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_6670, whole genome shotgun sequence.
ACCESSION   DASWTX010000590 DASWTX010000000
VERSION     DASWTX010000590.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3606
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6670"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3557)
                     /gene="rpoC"
                     /locus_tag="VGD38_09020"
     CDS             complement(<1..3557)
                     /gene="rpoC"
                     /locus_tag="VGD38_09020"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR02386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEY0728196.1"
                     /translation="MFRFQQEKTQLAPDFEAIRISLASPEKIRQWSHGEVTKPETINY
                     RTFKPERDGLFCARIFGPVADWECLCGKYKRMKHRGVICDKCGVEVTQAKVRRERLGH
                     IDLASPCSHVWFFKGLPSRIGHLLDIPLRELEKVLYFESYIVIDPGDVAGLKERELLS
                     DERYRELVRDYPAQFVAKMGAEAIKELLAMVDVEELAVDLRKRMKEETSQQKKLKYSK
                     RLKVATSFLKSGNRPDWMILDVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNN
                     RLKKLMELRAPEVIVRNEKRMLQEAVDALFDNGRRGRVLRGVNNRPLKSLSGTLKGKQ
                     GRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKKMALELFKPFIYNQLEKQGHAAT
                     IKQAREMVERQEPVVWDILEEVIREHPVLLNRAPTLHRLGIQAFEPVLVEGKAIKIHP
                     LVCTAFIADFDGDQMAVHIPLSPEAQIEAAVLMLSSNNILSPASGQPIAVPSQDIVLG
                     IYYLTRDRPGAKGEGRVFASLEEVLLALDAGEVTTQTPIKLRIHGDLIDLVQEHDPQD
                     ILRAVVQDEVHRVINTTVGRVIFNDSIPAGLPFINGTLKKKGLQSLVNYSHIRLGHEM
                     TVKMLDDLKTLGFLYATKAGISIGIDDLVTPVAKKPLVEKADKDVIAVEQQYLDGVIT
                     NGERYNKVIAIWSEVTDKVAKEMFKAMDDRERSSGELNPILVMSDSGARGSAQQIRQL
                     AGMRGLMARPSGEIIETPIQANFREGLNVLQYFISTHGARKGLADTALKTADSGYLTR
                     RLVDVAQDVIISEEDCGTLRGISASAIVEGGEEIESLRDRIVGRTALEDVTDPIEGSV
                     IVAANQEIDEDLAAEIQRSGVQRVRIRSVLTCESRRGCCIKCYGRNLATGRPVEIGEA
                     VGVIAAQSIGEPGTQLTMRTFHIGGTARLEESSKHEARQDGTVKYLDLQTVKSRKGER
                     IAMNRNGSLIIIDDRGREAARYQIVYGAHILVEDGSRVTQDQLLATWDPFTFAILTEV
                     AGHVKFQDLKEGVTFDEEVDEVTGQSRMVVKDSPDEKKQPRLEIRSASNKVLKTYQMP
                     VRANLMVQDGEEVEPGDIIAKIPRETTKTKDITGGLPRVVELFEARRPAETAVMSEID
                     GTVTLGAISKGKRKLIITGDDGEEREYDIPRGTHINVQDG"
BASE COUNT          697 a         1101 c          997 g          811 t
ORIGIN      
        1 ccgtcctgca cgttgatgtg cgtgccgcgc ggaatatcgt actcgcgctc ttcaccgtcg
       61 tcgccggtaa tgatcagttt gcgtttaccc tttgaaatag cgccgagggt aacggttccg
      121 tcgatttccg acatgaccgc cgtttccgcc ggacgccgtg cttcgaacag ctcgacgacg
      181 cgcggcaaac caccggtgat gtccttggtc ttcgttgttt cacgcgggat cttcgcaatg
      241 atgtcacccg gctcgacttc ctcgccgtcc tgcaccatca ggttcgcgcg caccggcatc
      301 tggtaagtct tcagcacctt gttgctggcg ctgcggattt ccaaacgcgg ctgtttcttc
      361 tcgtccggcg agtctttcac gaccatgcgc gactgaccgg taacttcgtc cacttcttcg
      421 tcgaacgtca cgccttcctt caagtcctgg aacttaacgt gtccagcaac ttcggtcagg
      481 atcgcgaacg tgaacgggtc ccacgtggcg agcagttgat cctgcgtcac gcggctgccg
      541 tcctcgacga ggatgtgcgc gccgtaaacg atctggtaac gcgcggcttc acggccacgg
      601 tcgtcgatga tgatcaacga accgttgcgg ttcatcgcga tgcgttcgcc cttgcggctc
      661 ttgaccgttt gcaggtcgag atacttgacc gtgccgtcct ggcgagcttc gtgtttcgac
      721 gactcttcca gacgcgcggt accgccgatg tggaacgtgc gcatcgtcaa ctgcgtgccg
      781 ggttcgccga tcgactgtgc ggcgataaca cccaccgcct cgccgatctc gaccggacgg
      841 ccagtcgcga gattgcgtcc gtaacacttg atacagcagc cgcgacgcga ttcgcaggtc
      901 aacaccgagc ggatacgcac gcgctggacg cctgagcgtt gaatctcggc tgccaggtct
      961 tcgtcgattt cctggttcgc cgcgacgatc acggagcctt caatcggatc ggtgacgtct
     1021 tcgagcgccg tgcggccgac gatgcggtcg cgcaacgatt cgatttcctc accaccttcg
     1081 acgatggcgc tggcggagat gccgcgcagc gtgccgcaat cctcttcgct gatgatcacg
     1141 tcctgtgcga cgtcgaccag acgccgcgtc aggtaacccg agtccgcggt cttcaacgcg
     1201 gtgtcagcca gacccttgcg agcgccgtgt gttgagatga agtactgcaa cacgttcaag
     1261 ccctcgcgga agtttgcctg aatgggcgtc tcgatgattt cacccgaggg cctcgccatc
     1321 agaccgcgca taccggcgag ctgacgaatc tgctgcgcgc taccacgagc gccggagtcg
     1381 ctcatgacga ggatcggatt gagctcgcca ctggagcgct cgcgatcgtc catcgccttg
     1441 aacatctctt tcgcgacctt gtcggtaact tcagaccaga tcgcgatgac cttgttgtag
     1501 cgttcgccgt tcgtgatgac gccgtcgagg tactgttgct cgaccgcgat cacgtccttg
     1561 tcagctttct cgaccagcgg tttcttggcg accggcgtta cgaggtcgtc gatgccgatc
     1621 gagatacccg ccttcgtcgc gtacaagaag ccaagcgtct tgagatcgtc gagcatcttg
     1681 acggtcattt cgtgaccgag acgaatgtgc gagtagttga ccagcgactg cagacctttc
     1741 ttcttcaacg taccgttgat gaacggcaga ccggcaggta ttgagtcgtt gaaaatgacg
     1801 cggcccacgg ttgtgttgat gacgcggtgc acttcgtcct gaacgacggc acgcaggatg
     1861 tcctgcggat cgtgttcctg aacgagatcg atcaagtcgc cgtgaatgcg gagtttgatc
     1921 ggcgtctgtg tcgtgacttc gccggcatcg agagccaata aaacctcttc aagcgaagca
     1981 aacacacggc cctcgccctt tgcgcccgga cgatcgcgtg tcaggtagta aataccgaga
     2041 acgatgtcct gcgacggcac ggcgatcggc tgaccgctgg ccgggctcag gatgttgttg
     2101 ctcgaaagca tcaacaccgc ggcttcgatc tgcgcttccg gactgagcgg aatgtgtacc
     2161 gccatctggt cgccgtcgaa gtccgcgatg aacgccgtac agacgagcgg gtgaatcttg
     2221 atcgctttgc cttcaaccag caccggctca aacgcctgaa taccgagacg atgcagtgtc
     2281 ggagcgcggt tcaagagcac cggatgctcg cgaatcactt cttcgagaat gtcccaaacg
     2341 acaggctcct gccgttcgac catctcacgc gcctgcttga tcgtggcggc gtgtccctgc
     2401 ttctcaagct ggttgtaaat gaacggcttg aacagctcga gcgccatctt cttcggcaga
     2461 ccgcactggt ggagtttcaa ctccggacca accacgatta ccgaacggcc tgaatagtcg
     2521 acgcgcttgc ccaacaggtt ctgacgaaaa cgtccctgct tgcctttgag cgttccgctc
     2581 aaagacttca gcgggcgatt gttcacaccg cgcagcacac gtccgcgacg gccgttatca
     2641 aacaacgcat cgaccgcttc ctgaagcatg cgcttttcgt tgcgcacaat gacttccggc
     2701 gcacgcagct ccatcagctt cttcaaacgg ttgttgcgat tgataacgcg ccggtagaga
     2761 tcgttcaggt ctgaagttgc aaaccttccg ccatccaacg gcaccaacgg ccgcaactca
     2821 ggtggaatta ccggaatcac gtcgaggatc atccagtccg gccggtttcc tgacttcaga
     2881 aaactggtcg cgactttcag ccgcttcgaa tacttcaact tcttctgttg cgaagtctct
     2941 tccttcatcc gcttgcgcag atcgacggcg agctcttcga cgtcgaccat cgcgagcagt
     3001 tccttgatcg cttcggcgcc catcttcgcg acgaactgcg cgggataatc gcgcaccagt
     3061 tcgcgatagc gctcgtcgct caacagttca cgctctttca atccggccac gtcgccggga
     3121 tcgatcacga tgtacgactc gaagtagaga accttttcga gctcgcgcag cggaatgtcg
     3181 agcaagtggc cgatgcggct gggcagacct ttaaagaacc agacgtgcga acacggactg
     3241 gccagatcga tatggcccaa acgctcgcgg cgcacctttg cctgtgttac ttcgacgccg
     3301 cacttgtcgc agatcacacc gcggtgcttc atgcgtttgt attttccgca gaggcactcc
     3361 caatcagcta ccggtccaaa aattcgcgcg cagaaaagtc catcgcgctc cggtttgaac
     3421 gtgcggtagt tgatcgtttc aggcttggtc acctcaccat gcgaccattg ccggatcttt
     3481 tccggtgacg caagtgagat acgaatagct tcaaaatcag gagctagttg cgtcttttct
     3541 tgttgaaatc gaaacatatc tctcctattg cgaaattgcg gcattgcgaa attgcgagat
     3601 ttggga
//
LOCUS       DASWTX010000591         2439 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_401166, whole genome shotgun sequence.
ACCESSION   DASWTX010000591 DASWTX010000000
VERSION     DASWTX010000591.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2439)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2439)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2439
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_401166"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..790)
                     /locus_tag="VGD38_09025"
     CDS             complement(<1..790)
                     /locus_tag="VGD38_09025"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HEY0728197.1"
                     /translation="MRAYVPGYQLTTPASLNDALALIGNEPGVWKPFAGGTDLMVLLE
                     AGKLPHRNYVNIWPLRELRGIEITESHVTLGALTTYTEVLANAVLQREFPMLCQAARE
                     TGGLAIQNRGTLGGNVVNASPAADSPPALLAYDAEIELVSSAGSRWLPYDGFHTGYKQ
                     MTMRGDELLSRIRMPRRFADVKQYYRKVGTRKAQAISKVCFAGVMRMDGTRVADVRVV
                     LGSVAPIVLRCKQTEDAIRGKDNNDDTLKLARETLQREIVPIDDV"
     gene            complement(787..1251)
                     /locus_tag="VGD38_09030"
     CDS             complement(787..1251)
                     /locus_tag="VGD38_09030"
                     /inference="COORDINATES: protein motif:HMM:NF013923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEY0728198.1"
                     /translation="MTKTEIEFKVNGESHKLEVFPMARLLDVLREELHLTGTKEGCGE
                     GECGACTVKLDGQIVNSCLVPVAQVNGAEITTIEGVATGDQLHAVQQAFIDHGGAQCG
                     ICTPGMILAAIDLLERNPAPTEADIRNGLAGNLCRCTGYMKIFESVVHACQK"
     gene            complement(1252..2286)
                     /locus_tag="VGD38_09035"
     CDS             complement(1252..2286)
                     /locus_tag="VGD38_09035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728199.1"
                     /translation="MRWIIAARDDLVWFIGSVVSSYLLLVLYVSGLVPLVPMVALWAI
                     LIDAPHVFGTFSRTYFDRSERQSRGRLLWGSLLFFAIGPAMVLAGAGLVFFFVAALWA
                     YYHLVKQHYGFMVLYKKKNADLARVDNALDRLLLLFAFNYPFVEFIARDPEAMARVPA
                     VLRGGVNGLAKILLAGTILLFVLWLGRQIQRAIAGEPLNVPKYLLLAAAIPMHWIVLL
                     TPMPHKPIAIVAILTIYHNFQYHRLIWFHNQKYADKRDKYGAAELISRRVLYYVAFGV
                     IFGLLYQGPRQLLGYFGLQNAAAGLEQSLMIQLGVSFLWGYAFIHYYLDSKIWRVRRD
                     PNVGKALHIN"
BASE COUNT          563 a          729 c          673 g          474 t
ORIGIN      
        1 gcacgtcgtc gatcggcacg atctcgcgct gcagcgtttc gcgcgcgagt ttcagcgtat
       61 cgtcgttgtt gtctttgccg cggattgcgt cttccgtttg tttgcagcga agaacgattg
      121 gcgcaacact tccgagcacc acgcgcacat ccgcgacgcg cgtgccgtcc attcgcataa
      181 cgccggcaaa gcagactttg gagatcgcct gtgccttgcg cgtgccgacc ttgcgatagt
      241 actgcttcac atctgcgaaa cggcgcggca ttctaatgcg cgacagcagc tcatcaccgc
      301 gcatcgtcat ttgcttgtag cccgtgtgaa agccatcgta gggcaaccac cgcgatccag
      361 cgctcgacac caattcaatt tccgcgtcgt aagccaacaa cgccggcggc gaatcggccg
      421 cgggtgaagc attaacgacg ttcccaccca gcgtgccgcg gttttgaatc gcgagcccac
      481 ccgtttcacg cgccgcctga caaagcatcg gaaactcacg ttgcaacacc gcgttcgcca
      541 gcacttccgt gtaggttgtc aaagcaccaa gcgtcacatg gctctcagtg atctcgatgc
      601 cgcgcagttc acgaagcggc cagatgttga cgtaattgcg gtgcggcagt ttcccggctt
      661 cgagcaggac catcagatcg gtgccgccag caaatggttt ccaaacaccc ggttcgttgc
      721 cgatgagagc gagagcgtcg ttgagtgaag cgggtgtggt cagttgatag ccgggaacgt
      781 aagctctcat ttttgacaag cgtgaacgac cgactcgaat attttcatgt agcccgtgca
      841 gcggcaaaga ttgccggcca aaccattgcg aatatcggct tcagtcggcg cgggattgcg
      901 ttcgagcaga tcgatagccg ccagaatcat cccgggagta caaataccac attgcgcgcc
      961 gccgtggtcg ataaatgctt gttgcaccgc gtgcagttgg tctccggtcg cgacgccttc
     1021 aatcgtcgtg atctcggcgc cgttaacctg cgcgaccggc accagacacg aattgacgat
     1081 ctgcccgtcg agcttcacgg tacacgcgcc gcactcgcct tcaccacaac cctccttcgt
     1141 tccggtcaag tgcaactctt cacgcagcac gtcgagcaag cgcgccatcg gaaacacttc
     1201 gagcttatgt gactcgccgt tcaccttaaa ctcgatttcg gttttggtca tttagtttat
     1261 gtgcagcgct ttcccgacgt tcggatcgcg gcgcacacgc cagatcttgg agtcgagata
     1321 gtagtggata aacgcgtagc cccagagaaa cgagacgccc aactggatca tgagcgattg
     1381 ctcgaggccg gccgcggcat tctgcaagcc gaagtaaccg agcaactggc gcgggccctg
     1441 gtagagcagt ccgaagatga cgccaaacgc gacgtagtaa agcacgcggc ggctgatcag
     1501 ttccgcggcg ccgtacttat ctcgcttgtc cgcatacttc tgattgtgaa accagatcaa
     1561 ccgatgatac tgaaagttgt gatagatggt cagaatcgcg acgatggcga tcggtttgtg
     1621 cggcatcggc gtcaacaaga cgatccaatg cattggaatc gcagccgcga gcagcaggta
     1681 tttcggaacg ttcaaaggct cgcccgcgat cgcgcgttgg atctggcgtc ccagccaaag
     1741 cacgaacagc aggatcgtgc ctgcaagtaa aatttttgca agcccattca caccgccgcg
     1801 caacaccgcc ggcacacgcg ccatcgcttc cggatcgcgc gcgatgaact caacaaacgg
     1861 ataattaaac gcaaacagca gtaacaaccg atcgagcgca ttatcaaccc gcgcaagatc
     1921 cgcgttcttc ttcttgtaca gcaccatgaa gccgtagtgc tgcttcacaa gatggtagta
     1981 agcccacagc gcggcgacga agaagaaaac aagacccgcg cccgcgagca ccatcgccgg
     2041 tccgatcgca aagaacagca gcgaacccca aagcagccgg ccgcggctct gtcgttcact
     2101 gcgatcgaaa taggtgcgag agaacgtgcc gaagacgtgc ggcgcgtcga tcaggatggc
     2161 ccaaagcgcg accatcggca ccagcggcac gagcccgctc acgtaaagca cgagcagcaa
     2221 ataactcgaa accaccgaac cgataaacca aacaagatcg tcgcgtgcgg cgatgatcca
     2281 gcgcaacgag attgcgctgg tgataggttt ggcgacgatt tctgcgctgg cagccatggc
     2341 gaagtttgtt ccggggctgg cggcattcta tcatcggcgc gggaatgttc cgaagcatgc
     2401 gataactatg gaaaaacaac tatttcaagc gcatccgtg
//
LOCUS       DASWTX010000592         2298 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_358033, whole genome shotgun sequence.
ACCESSION   DASWTX010000592 DASWTX010000000
VERSION     DASWTX010000592.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2298
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_358033"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..254)
                     /locus_tag="VGD38_09040"
     CDS             complement(<1..254)
                     /locus_tag="VGD38_09040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728200.1"
                     /translation="MRIRSLVKKYWKAACVVVGCWTFLALLFTPQTYLSNLRAPTPLT
                     WGQAFGATLMLFYVWAALTPLVLWLGGRFAFERPRLLRNLL"
     gene            complement(412..>2298)
                     /locus_tag="VGD38_09045"
     CDS             complement(412..>2298)
                     /locus_tag="VGD38_09045"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0728201.1"
                     /translation="GNPVSSISNKPIAFFAQDSWKIRPNLTLNYGVRYDYEITEQLPT
                     LPLRDPLSGIQLTAEQVLAAQDAMGVQQGFPRDKNNWAPRFAIAWDPGNNNKTVIRAA
                     FGIFYDHPLLAIAFNSDIADAVQQQQGILTPGSPAPTSLLNAAQVFQGTVCPPGGGNP
                     ICPPGVVTPGVAAGAQYQFGRQRFNDQTFPGFGPVLPFTLHVQKDFEYAYANQGNFTV
                     ERELTNDMTISGSYIYVGARHLPHPLDINAPRTELQIQNFVRWAGRNPVSTTEAIAFS
                     IPTSGAACPGGVPLQCFTMTTPTGAPAFPTAGTTFAIIIPGMVAAPLSNLGSRIVNAG
                     IANFFRPNAPNYFLAQALSGGLVTPAVLNSALAGSLRTPGTISPFGSINAQTSDGNSS
                     YNALNVDLKKRFSHHFQFLASYTWSHSIDDSSDLQTLLLPQDNRNFAAERADSLFDQR
                     HRFVFSGVISSPSRWASQGGFHRALSNFTISPIFEWSSGRPFNILSNQDTNNDQSNQT
                     DRPNVLADGTLCVAGSQGCVGIISNGQFTSGSLGRNFGLTHDYISLDLRVSKLVPLGE
                     RVRLELIAEGFNLFNRFNEAAASPFIDDVRAFNQRAENGRYYSRPTAAFDPRQFQFGV
                     KVNF"
BASE COUNT          482 a          648 c          732 g          436 t
ORIGIN      
        1 agcagattgc gcaagagcct cgggcgctca aacgcgaagc gcccgccgag ccagagcacc
       61 agcggcgtca gcgcagccca aacgtaaaac agcatcaagg tcgcgccgaa cgcctgtccc
      121 catgtcagcg gcgtgggagc gcgcaggttg gaaagataag tttgcggagt aaagaggagc
      181 gccaggaaag tccagcagcc cacgaccaca caggctgctt tccagtattt cttcacgagg
      241 cttcggatac gcatttccac cgtcgcctgc aaatatggag gcgcagggtg gccgatggca
      301 accgggttgt gatgagtcgt tggattttgg tggtagatgg tgagggaaga atagatccta
      361 gagaaagaat aggtcctata tgtcctatag gacctattct gttccagcca cttagaagtt
      421 gaccttcacg ccgaattgga actgacgcgg gtcaaacgcc gcggtcggac ggctgtaata
      481 acggccgttc tccgcgcgct ggttgaacgc ccgaacgtcg tcgatgaacg gcgacgcagc
      541 cgcttcgttg aaacgattga acaggttgaa gccctcggca atcagctcca gccgcacgcg
      601 ctcgccgagc ggaaccagtt tcgagacgcg cagatcgagc gagatgtagt cgtgggtcaa
      661 accgaaattg cgtcccagac ttccgctcgt gaactgcccg ttcgaaatga tgccgacgca
      721 gccctgcgat ccggcgacgc acagcgtgcc atccgccaac acgttcggcc ggtctgtctg
      781 gttcgactgg tcgttgttcg tgtcctggtt gctcaggatg ttgaacggac ggcctgacga
      841 ccattcgaag atcggcgaga tcgtgaagtt tgacaacgcg cgatggaagc cgccttgcga
      901 agcccaacgg ctcggcgacg agatcacgcc gctgaacaca aaccggtgac gctggtcgaa
      961 aagcgaatcg gcgcgctcag ccgcgaagtt gcgattgtcc tgcggcagca agagcgtttg
     1021 caggtcggac gaatcgtcga tcgagtggga ccacgtgtac gacgcgagga actggaagtg
     1081 atgcgagaag cgcttcttca gatccacgtt cagcgcgttg tagctcgagt taccgtcgga
     1141 tgtttgtgcg ttgatcgaac cgaacggtga aatcgttccc ggcgtgcgaa gcgaaccagc
     1201 gagtgcgcta ttcaacactg ccggtgtcac gagaccgccc gaaagcgcct gggccaggaa
     1261 gtagttcggt gcgttgggcc ggaagaagtt agcgataccg gcgttgacga tgcggctacc
     1321 caggttactg agaggcgccg caaccattcc cggaatgatg atcgcgaaag tcgtccccgc
     1381 ggtcggaaac gccggcgcgc cggtcggcgt cgtcatcgtg aaacactgca gcggcacgcc
     1441 accgggacaa gccgcgccac tggtcggaat cgagaacgcg attgcttccg tcgtgctcac
     1501 cggattgcgg ccggcccaac ggacgaagtt ctgaatctga agttccgtcc gcggagcatt
     1561 gatgtccagc gggtgcggca agtgacgagc gccgacgtag atgtagctgc cggagatcgt
     1621 catgtcgttc gtcagttcgc gctcgaccgt gaagttgccc tggttcgcgt acgcgtattc
     1681 aaagtccttc tgcacgtgga gcgtgaaggg aagcactggt ccaaagcccg ggaacgtttg
     1741 atcgttgaaa cgttggcggc cgaattgata ctgcgctccg gcagcaacgc ccggcgtcac
     1801 gacgcccggc gggcagatcg gattgcctcc gcccggaggg caaacggttc cctgaaacac
     1861 ctgcgccgcg ttcagcaaac tggttggcgc gggactgccc ggcgtcaaaa ttccttgttg
     1921 ctgttgcacc gcgtcggcga tgtcggagtt gaacgcgatc gcgagcagcg ggtgatcgta
     1981 gaagatgcca aacgctgcgc ggatgacggt cttgttgttg ttacccggat cccaggcgat
     2041 ggcgaaacgc ggcgcccagt tattcttgtc gcgcgggaat ccctgttgca cgcccatcgc
     2101 gtcctgcgcc gcaagcacct gttcagccgt caactggatg cccgaaagcg gatcgcgcaa
     2161 cggcagcgtg ggaagctgtt cggtgatttc gtagtcgtaa cgaacaccgt agttgagcgt
     2221 caggttcgga cgaatcttcc acgagtcctg cgcgaagaag gcgatcggtt tgttactgat
     2281 gctgctgacc ggattgcc
//
LOCUS       DASWTX010000593         1751 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_335721, whole genome shotgun sequence.
ACCESSION   DASWTX010000593 DASWTX010000000
VERSION     DASWTX010000593.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335721"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..232)
                     /locus_tag="VGD38_09050"
     CDS             complement(<1..232)
                     /locus_tag="VGD38_09050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728202.1"
                     /translation="MTSSVSTSGIRGVVLDIEGTTTPIAFVHDVLFSYARTHVKDFLA
                     NHAAEDDVRKDIELLRAEHAEDVRNDKQPPPLT"
     gene            complement(229..789)
                     /locus_tag="VGD38_09055"
     CDS             complement(229..789)
                     /locus_tag="VGD38_09055"
                     /inference="COORDINATES: protein motif:HMM:NF015065.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY0728203.1"
                     /translation="MAVVTIADENKTVRTHAEITSLLASHGIDYERWNPAHPVADNAP
                     ADEILRAYSREIEQLKARGGYVTADVIDVDPNTTGLEAMLAKFNREHWHDEDEVRFII
                     AGHGLFHIHTTAGPVLAIEVEAGDLIRVPRGTLHWFNLCGDRRIRAIRLFQDTAGWTP
                     HYSDSRVDERYLPVCFGLSHINSATV"
     gene            complement(794..1480)
                     /gene="mtnB"
                     /locus_tag="VGD38_09060"
     CDS             complement(794..1480)
                     /gene="mtnB"
                     /locus_tag="VGD38_09060"
                     /EC_number="4.2.1.109"
                     /inference="COORDINATES: protein motif:HMM:TIGR03328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016835 - carbon-oxygen lyase activity
                     [Evidence IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylthioribulose 1-phosphate dehydratase"
                     /protein_id="HEY0728204.1"
                     /translation="MPENLPQVENLPLAADLAPVADLPELASSLAAVAKTLHARGWLR
                     GTSGNLSAVVQREPLRLAMSPSGIDKGELDPTQVLTIDEHARIVSDHDAKPSDETLLH
                     IRIVQMRNAGAVLHTHSVWNTMLSDLYAREGGVNIKGYEMLKGLQGVRTHEHSEWLPI
                     VKNSQDMPALADTIADTLNNHKTAHGFLLERHGLYTWGDNLSQAKRHIEILEFLLETM
                     GRTLLVKNKG"
BASE COUNT          317 a          448 c          576 g          410 t
ORIGIN      
        1 ctgttaaagg gggtggttgt ttgtcgttgc gcacgtcttc ggcgtgttct gcgcgcagga
       61 gttcgatgtc cttacgaacg tcgtcctcgg cggcgtgatt cgcgaggaag tctttcacgt
      121 gcgttcgcgc gtaagagaag agcacgtcgt gaacaaacgc gatcggcgtg gtcgtgccct
      181 cgatgtcgag cacgacgccg cgaataccgg acgtggaaac tgatgacgtc acacggttgc
      241 cgagtttatg tgtgagagtc cgaaacacac cggcagataa cgctcgtcaa cgcggctgtc
      301 gctgtagtga ggcgtccagc ctgccgtgtc ctgaaacagg cggatcgcgc gaatgcgccg
      361 gtcgccgcag aggttgaacc agtgcaaggt gccgcgcggc acgcggatca aatcgcctgc
      421 ctcgacttcg attgcgagca ctggtccagc cgtggtgtga atgtggaaca gcccgtgacc
      481 ggcgatgatg aagcggactt cgtcttcgtc gtgccagtgt tcgcggttga acttcgcgag
      541 cattgcttcg aggccggtgg tgtttggatc gacgtcgatc acgtcggcag tgacgtagcc
      601 gccgcgtgct tttagttgtt cgatttcgcg cgagtaggcg cgcaggatct cgtccgcggg
      661 tgcgttgtct gcgaccgggt gcgcggggtt ccaacgttcg tagtcgatgc cgtggcttgc
      721 gagcagggaa gtgatttctg cgtgggtgcg cacggttttg ttttcgtcag cgattgttac
      781 gacagccata cggttaacct ttatttttga cgagtaaagt tcgtcccatt gtttcgagca
      841 ggaattccag gatctcgatg tgtcgctttg cttgcgacag gttgtcgccc caggtgtaga
      901 gcccgtgacg ttcgagcagg aaaccgtgcg cggttttgtg attgtttagt gtgtcggcga
      961 tcgtgtcggc gagcgccggc atgtcttgtg agttcttgac gatggggagc cactcgctgt
     1021 gttcgtgtgt acgcacgcct tgcaggccct tcagcatctc gtagcccttg atgttaacac
     1081 cgccttcacg cgcgtagaga tcggaaagca tggtgttcca gaccgagtgt gtgtgcagca
     1141 cggcgccggc gttgcgcatc tggacgatgc ggatgtgcaa cagggtctcg tctgatggtt
     1201 ttgcgtcgtg gtcgctgacg atgcgcgcgt gttcatcgat cgtgagcacc tgcgtggggt
     1261 cgagttcgcc tttgtcgata ccgctcgggc tcatggcgag tcggagtggt tcgcgttgca
     1321 caacggcgct caaattaccg ctggtaccgc gcagccaccc gcgcgcgtgc agggtcttgg
     1381 cgaccgccgc caggcttgag gcgagttcag gaagatccgc gaccggggca agatccgcgg
     1441 ctaggggaag attctcaact tggggcagat tctctggcac ggagcaaaga tgctaccaaa
     1501 cgcacctttc gcgcaagtgt ttgttaacgc cgaaggtctg gttggaagtg ggtctttacc
     1561 ggaaccaacg ccgaaggcgt tcgcaaattt cagcccacgg gttggagctt gcgacaaccc
     1621 tgggaataaa gaaaagaaga aagaccaacg ctgaaagcgt tggcaagtat cgggaggtcg
     1681 ggttcgccaa cgctttgagc gttagaactc tagaattatt tttgatccca gggttgttcc
     1741 aacccgtggg c
//
LOCUS       DASWTX010000594         1853 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_31070, whole genome shotgun sequence.
ACCESSION   DASWTX010000594 DASWTX010000000
VERSION     DASWTX010000594.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1853
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31070"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(82..981)
                     /locus_tag="VGD38_09065"
     CDS             complement(82..981)
                     /locus_tag="VGD38_09065"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY0728205.1"
                     /translation="MKIALLALALFVAVPVHEKHRQQPDWSKVEIKTTKIAGNVYMLE
                     GAGGNIGVSVGPDGILIVDDQFAPLADKIRASLKTLGQGKLRFVLNTHFHGDHTGGNA
                     AFGPEATIVAHDNVRKRMSTDQRSEFFGRTTPASPKEALPVITFDQSLTVHFNGEEIR
                     AIHFPNGHTDGDSVIFFTTSNVVHLGDDFFAGRFPFVDIDGGGSVEGLTKNIGELTTK
                     IPADAKLIPGHGPISTLDDLKAYHRMLVETTAIVRQKIEAKKTLAQIKSEGLPAEWNS
                     WGTGFIKTDQWLELVHRSLTAKK"
     gene            complement(988..1554)
                     /gene="hpt"
                     /locus_tag="VGD38_09070"
     CDS             complement(988..1554)
                     /gene="hpt"
                     /locus_tag="VGD38_09070"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006166 - purine ribonucleoside salvage
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HEY0728206.1"
                     /translation="MATSSAHIPSEFSNPNLDVLLSEEQIRARIVDLGAQITRDYAGL
                     NPLLIGVLKGALFFLSDLMRAIDTRLSLEFMAISSYGSSTRTSGEVRIMKDLDVPIEG
                     RHILVVEDIVDTGLTLSYLLANLHARGAASVKLAALLDKYERRQKEVQIDYLGFKIPD
                     EFVVGYGLDFAERYRNLPFIAVLKNPEA"
     gene            1674..>1853
                     /locus_tag="VGD38_09075"
     CDS             1674..>1853
                     /locus_tag="VGD38_09075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728207.1"
                     /translation="MRILLLFIALASFSAAAHAQSPAIQPCEATPSPGKPGASTPAKT
                     GVRSSQTGVDASIPDD"
BASE COUNT          408 a          538 c          503 g          404 t
ORIGIN      
        1 tgagagggga agccatcgaa atagtcgcgt tgggtcacca tcgccgccgt cctgagtatt
       61 ggcgcagccg ctaaccgtgg cttacttctt cgccgtcaga ctgcggtgga cgagctcgag
      121 ccattgatcg gttttgatga agccggtgcc ccaggagttc cactccgcgg ggaggccctc
      181 gcttttgatt tgggccaggg ttttcttcgc ttcgatcttt tgacgaacaa tcgccgtcgt
      241 ctcgacgagc atgcggtggt aagccttgag atcgtcgagg gtcgagatgg gaccatggcc
      301 ggggatcagt ttcgcgtccg cgggaatttt ggtcgtcaat tcgccgatgt tcttcgtcaa
      361 tccttcaaca ctgcctccgc cgtcaatatc gacaaacgga aaacgccccg caaagaaatc
      421 gtcgccgagg tggaccacgt ttgacgtcgt gaagaagatg acgctgtcgc cgtcggtgtg
      481 accgttcggg aagtgaatcg cgcgtatctc ttcaccgttg aagtgaaccg tcagcgactg
      541 gtcaaacgta atcaccggca gcgcttcctt tggcgacgcc ggcgtggtcc ggccaaaaaa
      601 ctccgaacgc tggtcagtag acatgcgttt gcgcacgttg tcatgcgcaa cgatcgtcgc
      661 ttccggtcca aacgcagcgt ttccgccggt gtgatcgccg tgaaagtgag tgttgagaac
      721 aaagcgcagc ttaccctggc ctaatgtttt cagtgacgcg cgaatcttgt cagccagcgg
      781 cgcaaactga tcatcgacga tcagaatgcc gtctggccca acagacacgc cgatgtttcc
      841 cccagcgccc tcgagcatgt aaacgttccc ggcgatcttg gtcgtcttga tttcgacctt
      901 cgaccagtca ggttgctgac gatgcttttc gtgaacgggg acggcgacga acagtgctaa
      961 agcaagcagc gcgattttca taagaattta agcctccgga tttttcagca cagcgatgaa
     1021 cggcaagttg cgataacgtt ccgcaaagtc caaaccatac ccaacgacaa actcgtcagg
     1081 tattttgaaa ccgagataat cgatctgcac ttccttctgc cgccgctcat acttatcgag
     1141 cagcgccgcc agcttcacac tcgccgcgcc gcgcgcgtgc aggttcgcca gcaggtacga
     1201 aagcgtgaga cccgtatcga cgatgtcctc gacgacgagt atgtgacgtc cttcaatcgg
     1261 cacgtcgaga tctttcatga tgcgcacttc gcctgaagtc cgcgtcgaag aaccgtaact
     1321 cgaaatagcc atgaactcga gactcagccg cgtatcgatc gcgcgcatca gatcgctgag
     1381 aaaaaaaagg gcgcctttca agacgccaat caacaacgga ttgagacccg cgtagtcgcg
     1441 cgtgatctgc gcgcccaaat ccacgatgcg cgccctgatc tgttcctccg aaagtaagac
     1501 gtcgagatta ggattgctga actccgacgg gatatgcgct gaagaagtag ccaactcgtt
     1561 tctccttctc aactgctggg attgaaagca agacgtttgc ctgtgcggcg cgtggtgcga
     1621 catactatgc aagctcttcc ttaaggtcaa tgcgtcgtcg ccataacaat ctcatgcgca
     1681 tactgcttct ctttatcgca cttgcttcgt tcagtgcggc cgcacacgca cagtcgcctg
     1741 caattcaacc gtgtgaagcg acgccgtctc caggtaagcc gggcgcgagc acgcccgcga
     1801 agaccggcgt gcgcagttca caaaccggcg tcgatgcaag cattcccgac gac
//
LOCUS       DASWTX010000595         2423 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_136783, whole genome shotgun sequence.
ACCESSION   DASWTX010000595 DASWTX010000000
VERSION     DASWTX010000595.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2423)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2423)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2423
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136783"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..735
                     /gene="aroF"
                     /locus_tag="VGD38_09080"
     CDS             <1..735
                     /gene="aroF"
                     /locus_tag="VGD38_09080"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: protein motif:HMM:NF012991.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HEY0728208.1"
                     /translation="ELVVIAGPCSVESEDQLLETAHAVKAAGADMLRGGAYKPRTSPY
                     DFQGLGVEALRFLKQASRETGLPIVTEVMSETDVEIVAEYADVLQVGARNMQNFSLLR
                     KLAPVSKPILLKRGPSATVKEWLLAAEYLLSGGNANVILCERGIKTFETATRNTLDLA
                     AVALVKELSHLPVLADPSHGTGLRTLITPMSKAAAAAGADGLLIEVHPCPERALSDGP
                     QSLDLPGFATLMQELGKQPLRDAKAA"
     gene            complement(1047..>2423)
                     /locus_tag="VGD38_09085"
     CDS             complement(1047..>2423)
                     /locus_tag="VGD38_09085"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728209.1"
                     /translation="AERLQDYQAFAAAARSDAAQTLALETDIAGTPAIPDSAKIEDLI
                     QAAQAASESENYVVAEQLLRRVLEKEPKHKTIRRDLGYVLAEQRKHKEAIDVLQEQVK
                     INPYEDFAYNMLGHVYWRQQDYANAEQSFRKQIEVTPLDQYAHANLGQMLVEWRKYKE
                     AVPELEQAISLTPEDEMLYVSLGQAYLNVGESEKSVKAFEEALKIERSPLVLNNIAYE
                     LATKGVQLDKAAQYAESAVASIANDLRNVDVGNLTEDDLYSVSSLAAYWDTLGWVYFR
                     KGDIDAAEKYLKAAWMVQQHSEVGYHMGAVAEKRANKPEAIRFYALGAVADHVRPEAR
                     ESLLKLTTADSIEKLLETARKELPSYTKFDMGQLLPNLKEPVEAEFFIVIAPDASRNA
                     QVVDVKFIKGADSLKPLASRLKSLKYSLVFPDASPTKIIRRGTLVCAKPGPCTFTLVS
                     PDLITSVD"
BASE COUNT          478 a          719 c          704 g          522 t
ORIGIN      
        1 gagcttgtcg tgatcgccgg tccgtgctcg gttgagtcgg aagatcaact gctggagacg
       61 gcgcatgcgg tgaaagctgc gggcgctgac atgttgcgcg gcggggctta taaaccgcgc
      121 acatcgccgt acgattttca gggactcggc gtcgaggcgt tgcggttttt gaaacaggcg
      181 agccgggaaa cgggtttgcc gatcgttacc gaagtgatga gcgagacgga tgtcgagatc
      241 gtcgcggagt atgcggacgt gttgcaggtt ggcgcgcgca acatgcagaa cttttcgctg
      301 ttgcgaaagc tggcgcctgt atcgaagccg attctgttga agcgtggacc gtcggcgacg
      361 gtgaaagagt ggttgttggc ggcggagtat ttgttgtcag ggggaaatgc gaacgtgatt
      421 ctgtgcgaac gcgggattaa gacgtttgag accgcgacgc gaaacacgtt ggaccttgcg
      481 gcggtggcgt tggtcaagga gctatcgcat ttaccggtgc tcgcggaccc atcacacggc
      541 acgggcctac gcactttaat cacgccgatg tcgaaagccg cggcggcagc gggcgcggac
      601 ggattgttaa tcgaggtcca tccctgcccc gagcgcgccc tctcggacgg cccccaatcc
      661 ctggacctcc ccggcttcgc caccctcatg caggagttgg gcaaacagcc gttgcgcgac
      721 gccaaagccg catagttctt ttccggtttt aacgccgaag gcgttcgcta atttcagccc
      781 agggttgctt caaccctggg gaaaaacaaa caaaggaaga caacgctgaa agcgttggcg
      841 aaaccttgca accgggttcg ccaacgcttt cagcgttgga tcgttgtggt taactgaacc
      901 cagggtagcc gctgcgcggc aaccctgggc tgaaactagc aaacgccttc ggcgttaacg
      961 tgccagagcg ccgcagcccg cacgccgcag cccgcacgcc gcagcccaca cgccgcagcc
     1021 agccgacacc gtgatgtttg tggcccctag tcaaccgacg taatcagatc cgggctcacg
     1081 agggtgaagg tgcaggggcc gggtttggcg cagaccaggg tgccgcgccg gatgattttc
     1141 gttggggagg cgtcggggaa gacgagcgag tatttcaaag acttcaaccg cgacgccaag
     1201 ggcttcaaac tatccgcgcc cttgatgaac ttcacgtcaa ccacttgcgc gttgcgcgag
     1261 gcgtccggtg cgatcacgat gaaaaactcc gcctccacag gctccttcag attcggcagg
     1321 agttggccca tgtcgaactt ggtgtaggac ggcaactctt tccgcgccgt ctcaagcaat
     1381 ttctcgatcg agtcagcagt cgtcagcttc aacaaactct cacgcgcttc gggcctgacg
     1441 tgatccgcca ccgcgcccag cgcatagaag cgaatcgctt ccggcttgtt ggcgcgtttc
     1501 tccgccaccg cgcccatgtg atagccgact tcactgtgct gctgaaccat ccacgcagcc
     1561 tttaaatatt tttccgccgc gtcgatatcg cccttgcgaa agtagaccca gccgagcgtg
     1621 tcccaatacg cagctaacga tgaaacgctg tacaaatcgt cctctgtaag attgccgacg
     1681 tcgacgttgc gcaaatcgtt cgcgatcgac gcaaccgccg attcggcgta ttgcgccgcc
     1741 ttatccaact gcacgccttt tgtcgcgagc tcataagcaa tgttgttcaa caccagcgga
     1801 ctgcgttcga tcttgagcgc ctcttcaaaa gccttgaccg acttctcgct ttctccaacg
     1861 ttcaggtaag cctggccaag actcacatac aacatctcat cttccggcgt gagcgagata
     1921 gcctgttcga gctcgggcac cgcctctttg tacttgcgcc actcaaccag catctggccc
     1981 aggttcgcgt gcgcgtactg gtccaacggc gtcacttcaa tctgtttgcg aaacgactgt
     2041 tcggcgtttg cgtaatcctg ctgccgccag taaacatggc ccagcatgtt gtaggcgaaa
     2101 tcttcgtacg gattgatctt cacctgctct tgcagaacat cgatcgcctc tttgtgtttg
     2161 cgttgctccg cgagcacata acccaggtcg cggcgaatgg tcttatgttt cggttccttc
     2221 tccagcacgc gtcgcagcag ttgttcggcg acgacatagt tctcactctc ggaagcggcc
     2281 tgcgctgcct gaatcaggtc ttcaatcttg gctgaatcgg gtatcgcggg cgtgccggcg
     2341 atgtcagttt cgagtgcgag tgtctgcgcc gcatccgaac gcgctgccgc ggcgaacgcc
     2401 tggtaatcct gcaaacgttc cgc
//
LOCUS       DASWTX010000596         4905 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_313796, whole genome shotgun sequence.
ACCESSION   DASWTX010000596 DASWTX010000000
VERSION     DASWTX010000596.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4905)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4905)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4905
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313796"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1558
                     /locus_tag="VGD38_09090"
     CDS             <1..1558
                     /locus_tag="VGD38_09090"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY0728210.1"
                     /translation="NQKTYALIDHAKEQFPHDNDSDADKRQKLTLLLAQSPWFSHAFI
                     FDADKGDKALILETQPNTSEEERERLIKSYGGWLKIEGHDTANQINRRTKRLIWWSGE
                     SDTSAGPTYTTTALFTFPYLPKNRPVFGGASFDTKYLKKTFFPEVLDDLISKKLADKE
                     DRSVAGMLHELNPPDPDQGHQDERLAMVVYLADAGSGRGYREFAATPTWGTGKPEVSQ
                     NLDEPFRGLSLGIRFQGTTAEAISRRWVFQSFLILGVLSVLMIGGLVLTYRSVNKQVA
                     FARLKSDFVSNVSHELRTPLALIRLYAETLELGRITTSEKKHEYYSIIRKESERLTAL
                     INNILDFSRIEAGRKEYDFRETDLAELVRNTLDSYRFQIEQQGFALEEQIEPGIPKVR
                     VDREAIARALVNLVNNALKYSDNEKFLGVKLYREQSVLKLEVIDRGIGIERHEQTRIF
                     EKFYRTCDPLVHNTKGSGLGLSLVRHITHAHGGEVEVESAPGRGSKFTLRLPLSGAAQ
                     GVTAGTTGAA"
     gene            1571..2254
                     /locus_tag="VGD38_09095"
     CDS             1571..2254
                     /locus_tag="VGD38_09095"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0728211.1"
                     /translation="MKSKILIVEDEPAMVAGLRDNFEYEGYEVISAEDGVTGLERALA
                     DSPDLVVLDVMMPRMSGLDVCKQLKAKRPAVPIIMLTARGQEIDKVVGLELGADDYVT
                     KPFSIRELMARVKAVLRRASTSAPASEIYRFSDVEVNVRSNEVRRNGELVDLSSKEFA
                     LLAYFIAHPVETLSRDRLLDAVWGYENYPSTRTVDTHIVHLRQKLEPNPEEPRFILTV
                     HGSGYKFVG"
     gene            2344..3156
                     /locus_tag="VGD38_09100"
     CDS             2344..3156
                     /locus_tag="VGD38_09100"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family protein-serine/threonine
                     phosphatase"
                     /protein_id="HEY0728212.1"
                     /translation="MTAAALTPALSPLEVKLEELQQQYAELNTAIFEAAQVHRRLCAP
                     SIVHYGPFDIASEIFAVRHLPGDFFTVEETNEGLVLALGDIGGKGLAAGMWVSHLAGL
                     VRTHTAANSSPEAIVAGVNRDFARMSPSAPLSSLFVARLNASLSTLDYCSAGHPPALL
                     LRGDGKLESLSDGGPVLGVVPGAWFDCGSVQLHAGDVILVCSDGILESFNDSEQEFGS
                     RRLEAEFRRAQGGSAEAMLFSVLGAVQDFAAPHPLTDDMTLVLITKKERSVL"
     gene            3153..4016
                     /locus_tag="VGD38_09105"
     CDS             3153..4016
                     /locus_tag="VGD38_09105"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY0728213.1"
                     /translation="MTKTFKFILLLSVFTAVVLAGAVVTAAQEKYAQLDKNKIHYVSE
                     GKGKDAIVLVHGWGCRLTHWYGQIPELSKRARVIAIDLPGHGESDKPEIKYDMDLFAA
                     AIDAVMKDAGVERAVLVGHSMGTPVVRQFYRKYPQKTLALVIVDGGLRPFGTKEQREQ
                     FMAPLRGPNYKEAGAQMFTAMTATLSDADKERVKTSSWNTPQQVLVSAMEAMAEESLY
                     GPDKINVPVLAILAKSPFWAADTEQFFRSLAPDLEYQMWDGVSHFLFMDKPKEFNAAV
                     IAFVDKKKLLK"
     gene            4048..4521
                     /locus_tag="VGD38_09110"
     CDS             4048..4521
                     /locus_tag="VGD38_09110"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY0728214.1"
                     /translation="MADVKPIPEGYHSVTPYLCVNGAVDAIEYYKKAFGAIELFRMEH
                     EGKIGHAEIKIGDSPIMLADEFPEMGFVSPATLGGSPVGIMIYVDDVDTIYKQALDAG
                     GVEKKPVQDQFYGDRSGTLTDPYGHVWTVATHKEDVAPEEIEKRLASMKASGAAG"
BASE COUNT         1101 a         1297 c         1497 g         1010 t
ORIGIN      
        1 caaccagaag acctacgctc tcatcgacca cgctaaagag cagttcccgc acgataacga
       61 tagcgacgca gacaaacgac aaaagctcac gcttttgctg gcacagtcgc cgtggttttc
      121 gcacgcattc atttttgacg ccgacaaagg tgataaggca ctcatcctcg agacgcaacc
      181 aaacacgagc gaagaggaac gtgagcgttt gataaagagc tacggcggct ggctcaaaat
      241 tgaaggccac gatacggcaa accaaatcaa ccggcgaacc aagcggctta tatggtggag
      301 tggtgagtcg gacacgtccg ctggtccaac ttacactacg actgccttgt ttacgtttcc
      361 gtatttacca aaaaaccggc cggtgttcgg cggcgcgagc ttcgatacga agtacttgaa
      421 aaagactttc tttccggaag tgctcgacga tctgatctcc aagaaacttg ccgataagga
      481 agatcgctcc gttgcaggca tgctccacga actgaaccct cccgatcccg accagggtca
      541 tcaagacgag cgtctcgcga tggtggttta tcttgcggac gccggttcag gccgcggtta
      601 tcgtgagttt gccgccacgc ccacgtgggg aacgggcaag ccggaagttt cgcagaacct
      661 tgacgagccg tttcgcggtc tctcgctggg gatcaggttt cagggaacaa cagcagaagc
      721 gatcagccgc cgttgggtgt tccagagttt tctgatactc ggcgtgttgt cggtgttgat
      781 gattggcgga ctcgtgttga catatcgcag cgtcaacaag caagtcgctt tcgcacggct
      841 caagtcagac ttcgtttcga acgtctcgca cgaactccgc acgccgctcg cgctgatccg
      901 gctctacgcc gaaacactcg agctcggccg catcaccacg agcgagaaga aacacgagta
      961 ctacagcatc attcgcaaag agagcgaacg cctgaccgcg ctcatcaaca acattctcga
     1021 cttctcgcga atcgaagcag gccgcaagga atacgacttt cgagaaactg acctcgccga
     1081 gctcgtgcgc aacacgctag actcgtatcg cttccagatc gaacaacagg gcttcgcgct
     1141 cgaggaacag atcgagccgg gcattccgaa agtgcgcgtc gatcgcgaag ccatcgcgcg
     1201 agcgcttgtc aatctggtca acaatgcact gaaatattcc gacaacgaaa aattcctggg
     1261 cgtgaagctt taccgcgagc agagcgtgtt gaagctggaa gtgatcgacc gcggcatcgg
     1321 tatcgagcgc cacgagcaaa cgcgaatttt tgaaaagttt taccgcacgt gcgatccgct
     1381 ggtgcacaac acgaaaggca gtgggctcgg tttgtctctc gtgcgtcata tcacacacgc
     1441 gcacggaggt gaggtcgaag ttgaaagcgc gccgggccgc ggcagtaagt ttacgctgcg
     1501 gctgccgttg tcgggcgctg ctcaaggtgt cacggcgggc acgacgggcg ctgcgtagga
     1561 ggcgacagtt atgaaaagca agatcctcat tgttgaagac gaacccgcaa tggtcgccgg
     1621 actgcgcgac aactttgagt acgagggtta cgaagtgatc agcgcggaag acggtgtgac
     1681 cggtctcgaa cgcgcgcttg ccgattcgcc ggatctggtt gtgctcgacg tgatgatgcc
     1741 gcgcatgagt ggtcttgatg tttgtaagca gttgaaagcg aaacgtccgg cagtgccgat
     1801 catcatgctg acggcgcgtg gtcaggagat cgacaaggtt gttggtcttg aactcggcgc
     1861 ggatgattac gttacgaaac cgttttcgat tcgcgagttg atggcgcgtg ttaaggctgt
     1921 attgagacgc gcttcaacgt ccgcgcccgc atcggagatt tatcgcttca gtgatgtgga
     1981 agtgaatgtt cgcagtaatg aggtgcggcg caacggcgag cttgtcgatc tttcgtcaaa
     2041 agagtttgcg ttgctggcgt acttcattgc gcatccggtt gaaacactaa gtcgcgatcg
     2101 actgctcgat gcggtgtggg gatatgaaaa ttatccgagc acgcgcacgg tcgatacaca
     2161 catcgttcat ctcagacaaa agctcgaacc aaatccggaa gagcctcgtt tcatacttac
     2221 cgtccatggc agtggttaca agtttgttgg gtagcgaact ttattctgtg tttccgtgtc
     2281 tcggtggtta agcaacacaa agacacagag acacggggat cctccagcag gaagttcaac
     2341 gttatgactg cagccgcact tacaccagcg ttgtctcccc tcgaagtcaa actcgaagag
     2401 cttcagcagc agtacgcgga gttgaacacg gcgatcttcg aagcggcaca agtgcaccgc
     2461 cgtttgtgcg cgccgagtat cgttcactat ggaccattcg acatcgcgag cgagatcttc
     2521 gcggtgcgtc acctgcccgg cgactttttc acggttgaag aaactaatga aggactggtg
     2581 ctcgcactcg gcgacatcgg cggtaaagga ctggccgcgg gaatgtgggt cagtcatctc
     2641 gcgggcttgg ttcgcacgca cactgccgca aacagcagtc ccgaggcgat cgtcgcgggc
     2701 gtgaaccgcg actttgcgcg catgtcgccg tcggcgccgt tgagcagttt gtttgttgcg
     2761 cggctcaacg cgagtttgag cacgctcgac tattgcagcg cgggtcatcc gccggcgttg
     2821 ttgctgcgtg gcgacggcaa actcgaaagt ctttctgacg gcgggccggt gctcggagtc
     2881 gtgcccgggg cgtggtttga ctgcggctcg gtgcaactgc acgcgggcga tgttattttg
     2941 gtttgttccg acggcattct cgaatctttc aacgactctg agcaggagtt cggcagccgg
     3001 cgtctcgaag cggagtttcg gcgcgcgcaa ggcggctcgg ctgaagcgat gctgttttca
     3061 gtgctgggcg ccgtgcagga tttcgccgcg ccgcatccgc tcacggacga catgacactc
     3121 gtgctgatca cgaaaaagga gaggagtgtt ctgtgacgaa gacattcaaa ttcatcttgc
     3181 ttttatctgt gtttacggct gtcgtgctgg ccggcgctgt tgtaacagcg gctcaagaaa
     3241 aatacgccca gctagacaag aacaagattc actatgtcag tgaagggaaa ggcaaagacg
     3301 cgatcgtgct ggtccatggc tggggttgcc ggctcacgca ctggtacggc cagataccgg
     3361 aactgtcgaa gcgtgctcgt gtcatcgcta tcgatcttcc ggggcacggc gagagcgaca
     3421 agcccgagat caagtacgac atggatctgt ttgcggcggc gatcgacgcg gtgatgaaag
     3481 acgccggtgt cgagcgcgcg gtgctggtgg gtcacagcat gggcacgccc gtggtgcggc
     3541 agttctatcg gaagtatccg caaaagaccc tggcgctcgt gattgtcgac ggaggattgc
     3601 gaccgttcgg cacgaaagag caacgcgagc agtttatggc gccgctgcgt ggcccaaatt
     3661 acaaagaagc gggcgcacag atgttcacgg cgatgaccgc gactttgtct gacgccgaca
     3721 aggaacgcgt caagacttcg tcctggaaca cgccgcaaca agtgctcgtg agcgcgatgg
     3781 aggcgatggc tgaagaatcg ctctatgggc cggataagat caacgtacct gtgttagcaa
     3841 ttctcgcgaa gtcaccgttt tgggcggcgg acactgaaca attcttccgc agtctcgcgc
     3901 ccgatctgga gtatcagatg tgggatggcg tgagtcactt cctgttcatg gataagccga
     3961 aggagttcaa cgccgcggtg atcgcttttg tcgacaagaa gaaactgttg aaataggaca
     4021 acaactcaag acaagaaagg ggaaattatg gcagacgtaa agccaattcc ggaaggatat
     4081 cactctgtaa ctccgtacct gtgcgtcaac ggcgcggttg acgcgatcga gtattacaag
     4141 aaagcgtttg gcgcgatcga actgtttcgc atggagcacg agggaaagat cggtcacgcg
     4201 gagatcaaga tcggcgactc gccgatcatg ctggctgacg agttcccgga gatgggtttt
     4261 gtttcacccg caacgctggg cggctcgccg gtcgggatca tgatttacgt ggacgacgtg
     4321 gacacgattt acaaacaagc gctcgacgcg ggtggtgtcg agaagaagcc cgttcaggat
     4381 cagttctacg gcgatcgttc gggtacgctg acggatccct acggtcacgt ctggaccgtc
     4441 gcaacgcaca aagaggacgt cgcaccagaa gagatcgaga agcgcctggc ctccatgaaa
     4501 gcgagcggcg ccgccgggta aagattcgca ggcgtcgcag gcggtttgtg gtcgtcgcag
     4561 cgctatctaa tgcgttgcga gcttccggct ttttcgcctc ggctacgccg ccggatgtga
     4621 ggcgaggctg cgcctcgccg ttagccttga gagaatgcgt ttgggctatg cccctggttc
     4681 gggctctgcc ccatttgggc caaaggccga acgaggggcg tagcccctaa gagtggtgaa
     4741 agggtctctc cggcggggca tagccccgcc tcacatccgg cggcgtagcc gaggctaggg
     4801 aagtacagga aacccaaccg cagccggcgc gtagctgctg ctggggaagg cgtaggtgtg
     4861 ggaaagaagt gcaaaacgaa cgccgcgacg taaccgtggt gcata
//
LOCUS       DASWTX010000597         1580 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_267505, whole genome shotgun sequence.
ACCESSION   DASWTX010000597 DASWTX010000000
VERSION     DASWTX010000597.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1580
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267505"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..259)
                     /locus_tag="VGD38_09115"
     CDS             complement(<1..259)
                     /locus_tag="VGD38_09115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728215.1"
                     /translation="MQAIDLTKPGERKKLIWAAILGFVALIVLWWVFFGFGGSSNTNT
                     PRASASPTPRNTRPGTQQAPQPVSQEVANLAVFAPIDYTPSS"
     gene            complement(265..1014)
                     /locus_tag="VGD38_09120"
     CDS             complement(265..1014)
                     /locus_tag="VGD38_09120"
                     /inference="COORDINATES: protein motif:HMM:NF022201.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GspMb/PilO family protein"
                     /protein_id="HEY0728216.1"
                     /translation="MSAEVTTAPRSQYKQRLSTFVQSRRGKMFGIAEVAALAGSCLVL
                     LLVLLSYLYFLVPARSRVSSLEQDKARLQANLQTLKGVVNKEQTTKEQVDRIAASLGE
                     FESGHLQRQDEGRLDFYDELNQIIVKNNLRNTSGPTYTPLDALGAEKTVAGKSITTKW
                     QSFYPGIAVMVTVEGQYQDIRRFVRDIERSKQFVIINQVELQRANENSAPASADEAAS
                     NPGGSLISLQLNLATYFQRENAVNPNAQPQE"
     gene            complement(1011..>1580)
                     /locus_tag="VGD38_09125"
     CDS             complement(1011..>1580)
                     /locus_tag="VGD38_09125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728217.1"
                     /translation="LPWALTAIILFVSVIGLVVVVRLTTVANSQAQALQLDINNLRQQ
                     EQGLLKNAEAVKNQLTPEQQQAVPAAHQLVDRRKFSWSRLLVDLEASLPPNVRVSRIA
                     VRDVTTQANQTVAELELAVFTKNPSTITDMISAMHEDGIFQPEMRGQTLQKGRGEAGT
                     EYELYVVYRPKSSYPNENVAEVTETEVPR"
BASE COUNT          303 a          473 c          443 g          361 t
ORIGIN      
        1 cagaagacgg cgtgtaatcg atcggcgcaa acaccgccag attagcgacc tcctgcgata
       61 ccggttgcgg ggcctgctgt gttcccggcc gcgtgtttcg cggcgtcggc gaggccgaag
      121 cgcgaggcgt attcgtatta ctgctgccgc cgaacccgaa aaacacccac cacaaaacga
      181 tcagagcgac aaagcccagg atggccgccc aaatcaactt cttcctctcg ccgggtttag
      241 ttaaatcaat tgcttgcatt gcggttattc ctgaggttgg gcgttagggt tgactgcgtt
      301 ctcgcgctgg aagtaggtcg ccagattcaa ctgcagactg atgagcgagc cgcccgggtt
      361 cgaagcagct tcatcagccg acgcgggcgc gctgttctcg ttcgcgcgtt gcaattccac
      421 ctggttgatg atgacaaact gtttgctgcg ctcgatgtcg cggacgaaac gtcgaatgtc
      481 ctggtactgt ccctcgaccg taaccatcac cgcgatgccg ggataaaaac tctgccactt
      541 ggtcgtgatc gatttgccgg ccactgtctt ttctgctccg agcgcgtcga gcggtgtgta
      601 cgtcggcccg gaagtattgc gcaggttgtt cttgacgatt atctgattga gctcgtcgta
      661 gaaatccaac cggccctcat cctgtcgctg caagtggccc gactcgaact cgccgagact
      721 cgcggcgatt cgatcgacct gctctttcgt ggtctgctct ttgttgacta cgcctttgag
      781 cgtttgcaga ttggcttgca gccgcgcctt atcctgttcg agcgaagaca cgcgcgaacg
      841 cgccggcacc agaaagtaaa gatagctaag caggacgagc agcagcacca gacaactgcc
      901 cgcaagtgca gccacttcag cgatgccaaa catcttgccg cgccgcgact ggacgaacgt
      961 gctcagccgt tgcttgtatt gagatcgagg tgcggtggtt acttctgcgc tcatctcggc
     1021 acctctgttt cagtcacttc cgcgacgttc tcattcggat agctcgactt cggacggtac
     1081 accacgtaca actcatactc cgttccggct tcgccacgcc ccttctgaag cgtttgcccg
     1141 cgcatctccg gctggaagat tccgtcctca tgcatcgccg agatcatgtc ggtgatcgtg
     1201 gacgggttct ttgtaaacac cgcgagctca agttccgcga ccgtctgatt ggcttgggtt
     1261 gtcacgtcgc gcacggcgat tcgcgacacg cgcacgttcg gcggcagcga agcttcgagg
     1321 tcgaccaata atctcgacca ggaaaacttt ctgcggtcga ccaactgatg cgccgccgga
     1381 acagcctgct gttgttcggg agtgagctgg ttcttgaccg cttccgcgtt ctttaagagg
     1441 ccttgctcct gttgccgcag attgttgatg tccaactgca gggcttgcgc ctggctgttg
     1501 gcgacggttg tcagccgtac tacgaccacc agcccgataa ccgagacaaa cagaatgata
     1561 gccgtcagcg cccacggtag
//
LOCUS       DASWTX010000598         3455 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_292207, whole genome shotgun sequence.
ACCESSION   DASWTX010000598 DASWTX010000000
VERSION     DASWTX010000598.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3455)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3455)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3455
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292207"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(108..1148)
                     /gene="ruvB"
                     /locus_tag="VGD38_09130"
     CDS             complement(108..1148)
                     /gene="ruvB"
                     /locus_tag="VGD38_09130"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:NF000868.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEY0728218.1"
                     /translation="MAEPISARLRDGSATDEDRQLDLTLRPTRIEDYVGQRQVKENLR
                     VYMKAARARREALDHVLLTGPPGLGKTTLANIVANEMGAELKSTAGPAIEKAGDIAAL
                     LTNLQEGDVLFIDEIHRLLPALEEKLYPAMEDYQLDLLIGQGPSARSIKLELPKFTLI
                     GATTRAGLITAPLRGRFGIVFHLDFYPHEDLEIICKRSAEILGVGIDNEGAREIARRS
                     RGTPRIVNRLLRRVRDYAEVDYDGRITQAVASDALNRMEVDTYGLDEMDRKLLLTIIE
                     KFNGGPVGLGTISASIHEEKDSIEEIIEPYLIQIGFLDRTPRGRLATPLAYEHFGIKA
                     HGYGRPTLFDPR"
     gene            complement(1166..1789)
                     /gene="ruvA"
                     /locus_tag="VGD38_09135"
     CDS             complement(1166..1789)
                     /gene="ruvA"
                     /locus_tag="VGD38_09135"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00084.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEY0728219.1"
                     /translation="MIAHLSGRLLTKEPNTVIVDVSGVGYEVNIPLSTFYELADTGSN
                     VELRIYTHVKEDALQLYGFKTTRERELFVNFISVSGIGPKLGIALLSGMSADELVASI
                     KNNNLARLTLIPGVGRKTAERLIVDLREKMTALAASQVATDAGTGVEAPIPSAGDDVR
                     AQALSGLLNLGYQKSAAEKAIDSALSEESEPTVESVLRRGLRKLARI"
     gene            1830..2546
                     /locus_tag="VGD38_09140"
     CDS             1830..2546
                     /locus_tag="VGD38_09140"
                     /inference="COORDINATES: protein motif:HMM:NF003992.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensing transcriptional repressor Rex"
                     /protein_id="HEY0728220.1"
                     /translation="MKSEKISELTTSRLSVYLRCLNALHAAGIKTISSQALAEQFHLN
                     SAQIRKDLGYFGEFGVRGVGYYVADLRDHITEILGLDHPHRVGIVGAGRLGTALANYN
                     GFEKSNFTVVALFDNDRQKIGKRIGEEHRLVHDVEHLAKIIRDEAIDVMVIAVPAKAA
                     QRVLNQIMSAGIKAVLNFAPVPLNSRKGVKVKTVDLTTSLESLSYFLAQPPASKVTHK
                     RGRRRDTDETVWMNKQPDAT"
     gene            2516..3277
                     /locus_tag="VGD38_09145"
     CDS             2516..3277
                     /locus_tag="VGD38_09145"
                     /inference="COORDINATES: protein motif:HMM:NF012804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HEY0728221.1"
                     /translation="MDEQTARRDLIAVCHLMYERSYVVSSDGNVSVRLDDGRILATPT
                     MTCKGRMTEDLLAITDLDGKALNNRRASSELAMHLLIYRERPDVNAVCHAHPPNGTAF
                     AVAGLAIDQPILSEVILTLGCVPLAAYGTPSTDELTKEMQPFVQHHNALLMANHGAVA
                     YGADLWQAWDRLETLEHTAKIAILSRVLGGSKNLPADAIEKLINVREQAGYLGESARG
                     QACGYLREPIMENGSGKITLTREELVELLSQAVNR"
     gene            3298..>3455
                     /locus_tag="VGD38_09150"
     CDS             3298..>3455
                     /locus_tag="VGD38_09150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001183618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031469 - bacterial microcompartment
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
                     /protein_id="HEY0728222.1"
                     /translation="MQEALGMVETKGLVAMIEAADAMVKAANVTLVGYEKIGAGFVTA
                     IVRGDVAAV"
BASE COUNT          732 a          966 c         1026 g          731 t
ORIGIN      
        1 gtgaaactgg tgcagcgagt ggccgagcat cgatccccac ggcgaccgat ttctaacgcc
       61 gaacgaatga cgtgtgactg aggtaataaa gcgcttcaca aaatctttca gcgggggtca
      121 aacaaggtgg ggcggccgta tccgtgtgcc ttgatgccaa aatgttcgta cgcgaggggg
      181 gtcgcgagcc ggccgcgcgg cgtgcggtcc aaaaatccaa tctggatcag gtaaggttcg
      241 ataatctcct cgatcgaatc cttctcttcg tgaatcgacg ccgagatagt tccgagtcca
      301 accgggccgc cgttgaactt ctcgataatc gtcagcaaca gttttcggtc catctcgtcg
      361 agaccataag tgtccacttc catccggttc aacgcatcac ttgcgaccgc ctgcgtgatg
      421 cggccgtcgt aatcgacttc agcgtaatca cgcacgcgcc gcagcagtct attaacgatt
      481 cgcggcgtgc cgcgcgaacg gcgcgcgatc tcgcgtgcgc cttcgttatc gatcccgacg
      541 ccgaggatct ccgcggagcg tttgcagatg atttcgagat cttcgtgcgg gtagaagtca
      601 agatgaaaga cgatgccgaa acgtccgcgc agcggcgcgg tgatcagacc ggcgcgcgtt
      661 gtggcgccga ttagggtgaa cttcggaagc tccagtttga tcgaacgcgc tgacggtcct
      721 tgtccgatca aaagatctag ctggtagtct tccatcgccg ggtagagctt ctcttcgagg
      781 gcaggcagca ggcgatgaat ctcgtcgata aagagcacgt cgccttcctg caggttggtc
      841 agcaaggcgg cgatgtcgcc ggctttttcg atcgccgggc cggcggttga tttgagctcg
      901 gcgcccatct cgttggcgac gatgttggcg agcgtggtct tccccaatcc cggcgggccg
      961 gtaagcaaaa cgtgatcgag cgcttcgcgg cgagcgcgcg cggctttcat atagacgcgc
     1021 aggttctcct tgacctgccg ctggccgaca taatcttcga ttcgcgtcgg gcgcagagtc
     1081 agatcgagct ggcgatcttc gtcagtcgcg gagccgtctc tcagtcttgc tgatattggt
     1141 tcagccatcg gttttctatt cccggctaaa tacgggctaa tttgcgtagc ccgcgccgaa
     1201 gcactgactc aacagtcggt tcgctttctt cgctgagtgc gctgtctatg gccttctcgg
     1261 cggcggattt ttggtagccc aaattcaaca agcctgacag ggcctgagcg cgcacatcgt
     1321 ccccggctga tggaatagga gcttcaactc cagtgcccgc gtctgtcgcg acttgcgacg
     1381 ccgcgagcgc cgtcatcttc tcacgcagat cgacaattag ccgctcggca gtttttcttc
     1441 caaccccggg aatcagcgtc aaccgcgcga ggttgttgtt cttgatcgac gccaccaatt
     1501 cgtccgcact catacccgaa agcagcgcga tcccgagctt cggtccgatt ccgctcacgg
     1561 aaatgaaatt cacaaacagc tcgcgctcgc gcgtcgtttt gaacccgtaa agctgtaacg
     1621 catcttcctt aacgtgcgtg tagatgcgca gctcgacgtt tgaaccggtg tcggcaagct
     1681 cataaaacgt tgacaacgga atgtttactt catagccgac acccgacacg tcgacgatca
     1741 cggtatttgg ttctttagtg agcagtctgc cgctgagatg tgcaatcatt tgcgccggat
     1801 attatactgg ccgcgacagg ttcccgcgaa tgaagtctga aaaaatatca gaactgacaa
     1861 ccagccggtt gagcgtttac cttcgctgcc ttaatgcgct tcacgcggcc ggcatcaaga
     1921 ctatctcatc gcaggcgctc gcggagcagt ttcacctgaa ctccgcgcag attcgcaagg
     1981 atctcggtta cttcggcgag tttggcgtgc gcggcgtcgg ttattacgtc gcggacctgc
     2041 gcgatcacat cactgagatt ctcggtttag accatccgca tcgcgtcggc attgtcggcg
     2101 ccggacgcct cggaaccgcg ctcgcgaact acaacggctt cgaaaaatcc aatttcactg
     2161 tcgtcgcgct gtttgataac gaccggcaaa agatcggaaa gcgcatcggc gaagaacaca
     2221 ggctggttca cgacgtcgaa cacctcgcga agatcattcg cgacgaagcg atcgacgtga
     2281 tggtgatcgc cgttccggca aaggcggcgc aaagagtgct caatcagatc atgtccgcgg
     2341 gaattaaagc ggtgctcaac ttcgcgccgg tgccgttgaa ctcgcgcaaa ggtgtgaaag
     2401 tcaagacagt cgatttaacg acgtcgctgg aatcgctctc gtattttctg gcccagccgc
     2461 cagcctccaa agttacgcac aaacgtggcc ggcgccgcga caccgacgaa acggtatgga
     2521 tgaacaaaca gccagacgcg acctgatcgc cgtctgccac ctgatgtacg agcgaagtta
     2581 cgtcgtttcg tcagacggca acgtgagtgt gcgcctggat gacgggcgga tactcgcgac
     2641 gccgacgatg acgtgcaagg gccgcatgac ggaagacctg ctggcgatca cggacctcga
     2701 cggcaaggcg ctgaacaacc gccgcgcgtc gagcgagctg gcgatgcatc tgctgattta
     2761 tcgcgaacgt ccggacgtga acgcagtctg tcacgcgcat ccgccgaatg ggaccgcgtt
     2821 cgccgttgct ggactcgcga tcgatcagcc gatactttcg gaagtgatcc tgactcttgg
     2881 ttgtgtgccg cttgcggcgt acggcacgcc gtcaacggat gagctgacga aagagatgca
     2941 gccgtttgtg caacatcaca acgcgctgtt gatggcgaat cacggcgcgg tcgcgtacgg
     3001 cgcggatttg tggcaggcgt gggatcggct ggagaccttg gaacacacgg cgaagatcgc
     3061 gatcctgtcg cgcgtgctcg gcggttcgaa gaacctgccg gcggatgcga tcgagaagtt
     3121 gatcaatgtg cgcgaacagg ccggttatct aggtgaatcg gcgcgcggtc aggcgtgtgg
     3181 ttatttgcgc gagccgatca tggagaacgg aagcggtaag atcacgctta cacgcgaaga
     3241 gttagtggaa ttactcagtc aagcagttaa tagataatag ataagaggag cagcttaatg
     3301 caggaagcac tcggaatggt cgaaaccaag ggactcgtcg cgatgatcga agcggctgac
     3361 gcgatggtca aggcagcaaa cgtcactttg gttggttatg aaaagattgg cgcgggtttt
     3421 gtcaccgcaa tcgtgcgcgg cgacgtagcc gcggt
//
LOCUS       DASWTX010000599         1846 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_335817, whole genome shotgun sequence.
ACCESSION   DASWTX010000599 DASWTX010000000
VERSION     DASWTX010000599.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1846)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1846)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1846
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335817"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            184..639
                     /locus_tag="VGD38_09155"
     CDS             184..639
                     /locus_tag="VGD38_09155"
                     /inference="COORDINATES: protein motif:HMM:NF013921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEY0728223.1"
                     /translation="MAQSLARLWTHLIFSTKDRFPFLTDKSIRRDMHAYLATILRKYD
                     CETLIVGGVEDHTHSLFALSRVHPIATVVKETKRTSSGWVKGLSPKLRRFHWQGGYAA
                     FSVSQSNLQDVIAYIENQEEHHKRVTFQDEYRAFLNAYGVDYDERYVWD"
     gene            773..1105
                     /gene="groES"
                     /locus_tag="VGD38_09160"
     CDS             773..1105
                     /gene="groES"
                     /locus_tag="VGD38_09160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020055847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEY0728224.1"
                     /translation="MATNIRPLHDRVIVRRIEEGEQIRGGIIIPDTAKEKPQEGEVIA
                     VGEGKYKDDGTRQALDVKVGDRVLFGKYSGSEIKIDGEEYLIMREDEILGILERAGAA
                     SGGKKGGK"
     gene            1172..>1846
                     /gene="groEL"
                     /locus_tag="VGD38_09165"
     CDS             1172..>1846
                     /gene="groEL"
                     /locus_tag="VGD38_09165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004585059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEY0728225.1"
                     /translation="MAKQVIHGEDSRAAILRGINQLADAVKITLGPKGRNVVIDKKFG
                     SPTITKDGVTVAKEIELKDALENMGAQMVREVASKTSDVAGDGTTTATVLAQAIFREG
                     VKTVAAGANPMALKRGIDKAVERATEEIRRLAKPVKGDAIAQVGTVSANGDTTIGNII
                     AEAMNTVGKDGVITVEESKTMETALEVVEGMQFDRGYLSPYFVTDPERMEAVLDNPLI
                     LINEKKI"
BASE COUNT          470 a          520 c          494 g          362 t
ORIGIN      
        1 tcagcgttgc cacgatcaag ggttttgacg atcccagggt tgaagcaacc cgtgggctga
       61 aattagccaa cgccttcggc gtttcacttg cgccgcatca cattgcaggc gcgcgtgcta
      121 gaatccctca caaccgaatc aaggtaaacg ctctacaaaa acaaaccagg aggccacctc
      181 actatggctc aatcactcgc gcgtctgtgg acgcacctca tcttttcaac caaggaccgc
      241 ttcccgttct taaccgataa atccattcgc cgcgacatgc acgcgtacct cgcgacgatc
      301 ctcaggaaat acgattgcga aacattgatc gtcggcggcg ttgaggatca cacgcattcg
      361 ttgttcgcgc tttctcgggt tcatccgatc gccacggtcg tcaaggaaac caaacgaaca
      421 tcgtcaggtt gggtcaaagg actctcaccg aaattgcgaa ggtttcattg gcaaggcggg
      481 tacgccgcct tctccgttag ccaatccaat ttacaagacg taattgcgta catcgagaac
      541 caggaggagc accacaaacg cgtcacattc caggatgagt atcgtgcttt tttgaacgcg
      601 tacggagtcg actacgacga acgttacgtt tgggattaat agctaacctg tggttcgccc
      661 gttgacatcc gcacgcctct cgcactattc ttagcactct caaatataga gtgctagtta
      721 tacatcctaa attcaccaat tttctcgacc agttgaaagg agattccagg ttatggctac
      781 gaatatcagg cctcttcatg accgcgtgat tgtgcggcgg attgaggagg gggagcagat
      841 tcgggggggc atcattatcc cggacactgc caaggaaaag ccgcaggaag gcgaagtcat
      901 cgccgtcggc gaaggcaaat acaaagatga cggcacccgc caggccctcg acgtgaaggt
      961 cggcgatcgc gttctcttcg gtaaatacag cggttccgaa atcaagatcg acggcgaaga
     1021 gtacttgatc atgcgtgagg acgagatcct cggcatcctc gagcgcgccg gtgctgcctc
     1081 tggcggcaag aaaggcggca agtagtcgat tcacgaccac tccgccgttt ttgggaactc
     1141 acattaattt taagcaggag aagatagaga aatggctaag caagtaatcc acggtgagga
     1201 ctcgcgggca gcgatcttgc gtggaatcaa tcagctcgcc gacgctgtca agatcaccct
     1261 cggcccgaaa ggccgcaacg ttgtgatcga caagaagttt ggctcaccca ccatcaccaa
     1321 agacggcgtg accgtcgcaa aagagatcga actcaaagat gctttggaaa acatgggcgc
     1381 ccagatggtg cgcgaagtcg cttccaaaac gtctgatgtc gccggtgacg gcaccaccac
     1441 cgcgaccgtg ctcgcccagg cgatcttccg cgaaggcgtg aagactgttg cggccggcgc
     1501 gaacccaatg gccctcaagc gcggcatcga caaggctgtc gagcgcgcca ctgaagagat
     1561 cagacgcctc gcgaagcccg tcaagggcga tgcgatcgcc caggtcggaa ctgtttccgc
     1621 caacggcgac accaccatcg gcaacatcat cgccgaagcg atgaatacag tcggaaaaga
     1681 cggcgtgatc accgttgaag aatcgaagac gatggaaacg gctctcgaag tcgtcgaggg
     1741 aatgcagttt gaccgcggtt atctcagccc ctacttcgtc acggatcccg agcgcatgga
     1801 agccgtgctc gacaatccac tgatcctcat caacgagaag aagatc
//
LOCUS       DASWTX010000600         2199 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_136828, whole genome shotgun sequence.
ACCESSION   DASWTX010000600 DASWTX010000000
VERSION     DASWTX010000600.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2199)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2199)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2199
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136828"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..555
                     /locus_tag="VGD38_09170"
     CDS             <1..555
                     /locus_tag="VGD38_09170"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family protein-serine/threonine
                     phosphatase"
                     /protein_id="HEY0728226.1"
                     /translation="ADVAGKGVPAAILMAFLRASLRAASHIGYATHISMSKVNFLLWE
                     SIERNQFVTAFYGILDAAKNTLAYSNAGHNPPLLLNAAGTSRFIDKGEQPLGMFRGTR
                     YHEYYLDFEPGDVLVLYTDGATEAASPSGEEFGRERLAQAVKDNYDKPAREMIASLQL
                     AILEWTDNAGANDDVTFFIIKALK"
     gene            complement(625..882)
                     /locus_tag="VGD38_09175"
     CDS             complement(625..882)
                     /locus_tag="VGD38_09175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728227.1"
                     /translation="MATYRDPVTCFAPLEVIERLLEIRVEAGYSPAVYLLSPDDLADY
                     LDAYGFDVYALSEAEAEFHFGDYRAPLAPGGDHAHCSLTAH"
     gene            1057..>2199
                     /locus_tag="VGD38_09180"
     CDS             1057..>2199
                     /locus_tag="VGD38_09180"
                     /inference="COORDINATES: protein motif:HMM:TIGR01420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HEY0728228.1"
                     /translation="MSSQQPNVTSPPPAPPLLNFVAILREMLAASDKVSDLIFSPGRP
                     PQIELAGKLVPVRINALEKLTPAHTAGIAKLIIGNQQAALDSLEKSGSADLSFSVPGD
                     ARFRVNIFKQRGTHAIVMRVIPMRPPRFSDFNLPEQLKEIVDIKNGIVLVTGPTGSGK
                     SSTLAAIIDLINETHYYHIVTIEDPIEFLHTHKNSTIHQRELHSDTPSFAVALRAALR
                     QAPKVILVGEMRDRETIEVALEAAETGHLVLSTLHTIDASKTVDRIIGVFPKNEEKVI
                     RTRVAQSFRFIISQRLIPLGDGKGRIAAIEILKATMRTREYIEKGESEGKSLIDAMEQ
                     GDQDGMQTFDTVIEQFIRDGVVSIEGALPYATNQNNLLLKISDLAGA"
BASE COUNT          519 a          640 c          593 g          447 t
ORIGIN      
        1 gccgacgtcg ccggcaaagg cgtgcccgcc gcgattctga tggcgtttct gcgcgcgagt
       61 ttgcgagcgg cgtcgcacat cggttacgcc acgcacatct cgatgtcgaa agttaacttc
      121 ctgctgtggg agtcgatcga acgcaaccag tttgtcacgg cgttctacgg catcctcgac
      181 gcagcgaaga acacgttggc ctattcaaac gcgggtcaca atcctccgtt gctgctgaac
      241 gccgctggca cttcccggtt tattgacaaa ggtgaacagc cgttgggaat gtttcgtggg
      301 acgcggtatc acgagtatta cctcgacttt gaacccggcg acgtgctggt gctttacacg
      361 gatggcgcga ccgaagctgc gagcccgtca ggcgaagagt ttggccgtga acgcctggcg
      421 caggcagtga aagataatta cgacaagccg gcgcgcgaga tgatcgcgag tttacaactg
      481 gcgattttgg agtggaccga taacgccggc gcgaacgacg acgttacgtt ctttataatc
      541 aaagcactca aataacaaac gcgggaggcg tgtcccatgt gagagcagcc tcccgcgttg
      601 cttattctga agcgatttgt gattctagtg tgcggtcagc gagcagtggg cgtgatctcc
      661 gcccggtgct agtggagcac gataatcgcc aaagtgaaac tcagcttcgg cctccgacaa
      721 agcatacaca tcgaagccat acgcatcgag atagtctgcc aaatcatcgg gggaaagaag
      781 atatacggca ggcgaataac ccgcttcaac acgaatttcc agcaggcgct cgattacttc
      841 aagtggtgca aagcatgtaa caggatctct gtacgttgcc atgtgtccag cgcctttctt
      901 ccaaaatcag ggccgcggtc caaaatctcg cttaccgccc cgcgttcccc tcggtgaata
      961 accgtaacga cgactttgat gtacgtacct tgaaactagt ttgttcgcca cgcaatcttt
     1021 tgacgcgcga ccatagcgaa aagttcctga atcaacatga gtagccaaca accaaacgta
     1081 accagcccgc ctccggctcc gccgctacta aatttcgtcg ccattttgcg cgagatgctc
     1141 gccgcgtccg acaaagtcag cgacctgatt ttcagtcccg gacgcccgcc gcaaatcgaa
     1201 ctcgcgggaa agctggtgcc ggttcgtatc aacgctctgg aaaaactaac cccggcccac
     1261 acggcgggaa ttgccaagtt gatcattggc aatcaacaag cggcgctgga tagtttggaa
     1321 aagagcggtt cggccgactt gtcgttcagt gttcccggcg atgcgcgttt tcgcgtcaat
     1381 atcttcaaac aacgcggcac tcacgcgatc gtgatgcgcg tgatcccgat gcgtccgccg
     1441 cgtttcagcg acttcaatct tcccgaacaa ctgaaagaga tagtagacat caagaatggt
     1501 atcgtgctgg tcactggccc gaccggcagc ggcaagagtt cgacgctcgc ggccatcatc
     1561 gacctgatca acgagacgca ctactaccac atcgtcacga tcgaggatcc gatcgagttt
     1621 ctccacacac acaagaattc cacgattcac cagcgcgagc ttcattccga cactccgagt
     1681 ttcgctgttg cactccgcgc tgcgttgcgc caggcgccca aggtgattct cgtgggtgag
     1741 atgcgcgacc gcgaaacgat tgaagtcgct ctcgaagctg ccgaaaccgg acacctggtg
     1801 ctctcgacgt tgcacacgat cgacgcttca aaaaccgtcg accgcatcat cggcgtgttt
     1861 ccgaagaacg aggagaaagt gatccgcacg cgcgtcgcgc agtcgtttcg cttcatcatt
     1921 tcccaacgcc tgattccgct cggcgacggc aaaggccgca tcgccgcgat tgaaattctg
     1981 aaagctacga tgcgcacgcg cgagtacatc gagaaaggtg aatcggaagg gaagtcgctg
     2041 atcgacgcga tggagcaggg cgatcaggac ggaatgcaga ccttcgacac cgtcatcgag
     2101 caattcatcc gcgacggcgt cgtgagcatc gaaggcgcgc tgccctacgc cacgaaccaa
     2161 aacaatctct tactaaaaat ctccgacttg gccggcgca
//
LOCUS       DASWTX010000601         1718 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_245508, whole genome shotgun sequence.
ACCESSION   DASWTX010000601 DASWTX010000000
VERSION     DASWTX010000601.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245508"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(5..469)
                     /locus_tag="VGD38_09185"
     CDS             complement(5..469)
                     /locus_tag="VGD38_09185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728229.1"
                     /translation="MKVFLFLLLAAVIAAGAVNPAATYNDTLSGSQTAAPQSDGIALN
                     LTAAGDLPGMIKLTLARSEANVTGGSLTMTVLPANADASSSERGSLTGTVSSGALTLS
                     ENGTLASASNVQVSITGGTGEYASVTSGTATINVTANAENPSQLGGTLVLNF"
     gene            complement(494..>1718)
                     /locus_tag="VGD38_09190"
     CDS             complement(494..>1718)
                     /locus_tag="VGD38_09190"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0728230.1"
                     /translation="TLGLFVQDVATLIPQRLTANLGLRYSLFRYSQSSQDNPLDAAGR
                     ATVPELEASFDDITFNAGLAYAINSHFTLSGNISRGFRAPNVNDFAATGLSGLGFEVS
                     PDEGVRLGGSAGLLDASRRLIDTHLLEPIRAEQLYSYELGLRFVSSRFSGNVSAFDSE
                     ISDLIERRTLLLPQGSVGQTVGGQPIIRQDSTGAVFTSLSNTAVFVRTNVAKVRMRGV
                     EGNFAVKLRHDLTAHANTFYVRGKDLRTGLPPSLENGIPPMTGFAGIKWERAGKWIEL
                     YSNFAAPQRRFSDNDISQARIGGLRTREEIAGFFNGGAIPRGLVRNGILLPTGETLAQ
                     VQLRVLGPGLQPNALFSKNPGFALLNLRGGFRIGERSTITVMLENLLDKNYRTMGSGI
                     DGPGTNAAVRYSFNF"
BASE COUNT          332 a          479 c          562 g          345 t
ORIGIN      
        1 gttatcagaa gttgagaact aaagtgccgc cgagttgaga ggggttctct gcattggcgg
       61 tgacgttgat cgttgcggtg ccgctcgtga cgcttgcgta ttcgcccgtg ccgccggtga
      121 tcgacacctg cacgtttgaa gcggaagcga gtgtgccgtt ttcgcttaac gtgagcgcgc
      181 cactcgagac tgtgccggtt agtgaaccgc gttcgctcga cgaagcgtcg gcgttggcgg
      241 gcagcacggt catggtcaaa ctgccgccgg tgacgtttgc ttccgatcgg gccagcgtga
      301 gcttgatcat ccccggcaga tcgccggccg ctgtcaggtt gagggcgatg ccgtcagact
      361 ggggcgcggc ggtttgcgag ccgctcagcg tgtcgttgta agtcgccgcc ggattcacag
      421 cgccggccgc gattacggct gccagtagta aaaacaaaaa gactttcact tgaagacctc
      481 ctcgaacgtg cgattagaaa ttgaatgagt aacggaccgc tgcgtttgtg cctggtccat
      541 cgatgcccga acccatcgtg cgatagttct tgtccaacag gttctcgagc atgaccgtga
      601 tggtggagcg ttcgccgatc ctgaaaccgc cgcgcagatt cagaagtgcg aaccccggat
      661 tttttgagaa cagcgcgttt ggttgcagac ctggaccaag cacgcgaagc tgaacctgcg
      721 ccagcgtctc accggtgggc agcaggattc cgttgcgcac gaggccgcgc gggatcgcgc
      781 cgccgttgaa gaaaccggcg atctcttcgc gcgtgcgcaa gccgccgata cgcgcctgcg
      841 agatgtcgtt gtcggagaaa cggcgctgcg gcgcggcgaa gtttgagtag agctcgatcc
      901 acttgccggc gcgttcccac ttgatgccgg cgaaacccgt catcggcgga atgccgtttt
      961 cgagtgacgg cggcaaaccg gtgcgcaggt ctttgccgcg cacgtagaag gtgtttgcgt
     1021 gcgccgtgag atcgtgacgc agtttgacgg cgaagttgcc ttcgacgccg cgcatcctga
     1081 ctttcgccac gttggtgcga acgaacaccg cggtgtttga aagtgatgtg aagacggcgc
     1141 cagtgctgtc ctggcgaatg atcggctgtc caccgacggt ttggcccacc gagccttgcg
     1201 gcagcaacag cgtgcggcgc tcgatcagat cggagatctc cgagtcgaaa gccgagacgt
     1261 tgccgctgaa ccgcgaactg acaaagcgca gtcccaattc gtaactgtag agttgttccg
     1321 cgcgaatagg ttcgagcaaa tgcgtgtcga tgagacgtcg cgacgcgtcg agcagtcccg
     1381 cggagccgcc gaggcgaacg ccttcgtcgg gcgagacttc aaaaccgagt cctgacaaac
     1441 cggtcgcggc gaagtcgttt acgtttggcg cacgaaaacc gcggctgatg tttccgctga
     1501 gcgtgaagtg tgaattgatc gcgtaagcga gaccggcgtt gaaagtaatg tcgtcaaaac
     1561 tcgcttcgag ttcgggcacg gtcgcgcgtc cggcggcgtc gagcggattg tcctgcgacg
     1621 actggctgta acggaaaagg ctgtaacgca gaccgaggtt cgccgtgagt cgctgcggaa
     1681 tgagcgtcgc cacgtcctga acgaacagtc cgagtgtt
//
LOCUS       DASWTX010000602         2061 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_160133, whole genome shotgun sequence.
ACCESSION   DASWTX010000602 DASWTX010000000
VERSION     DASWTX010000602.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2061
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160133"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            92..832
                     /locus_tag="VGD38_09195"
     CDS             92..832
                     /locus_tag="VGD38_09195"
                     /inference="COORDINATES: protein motif:HMM:NF024141.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0728231.1"
                     /translation="MSLIRALHAELLKLKRTLAFRVIFVLPFFVALLQFFVIWRTKKF
                     AAGFDLWQTHPENSFQIWAIFMMPLLITLETALLNGIEHSDKQWKHLFALPVPRRSIY
                     LAKFIVALGLILVSTMVLALLTVIVGVVAVSLKPELAAITGPIPYFTIAKQATLVWLA
                     GWFITAIHTWISMRWAGFAIALGAGIGGTFFALFAASASLGKYYPWLLPMNLFLEGRF
                     TTALVLGIGGGVVAALLGCFEFVRRDVA"
     gene            complement(829..>2061)
                     /locus_tag="VGD38_09200"
     CDS             complement(829..>2061)
                     /locus_tag="VGD38_09200"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728232.1"
                     /translation="DYEAQYYVNLALALIRQVRSPGELSRLEVSKRAQLIDEAKEQCR
                     AALKLDPFNAKAYGCLGVIAFRQDAFLDAEVYFLKSIELNPTEGSYIELASLYCQMGR
                     YDEATAKLQEALKLNPKDARAYIELGNVALWKEDNKEAVRHSREAIFVEPKNPETYRA
                     LAIALIRSEKYEEAETVVRRALVTLAPNRPWRLYLLLAQILIRVGDVTNKDRKKKELD
                     LYEEALRYVNEAKQASPPNADIAFHAGIVYHRLEDYSSSHKSFAECLKLNRTRFDAER
                     CGRIVQEAVRQQKRTFTISQWFGVGLAVVCFAMLIWLWVSYFTGHQRTRVEPSATGPV
                     TKVEYTVDQTLFNVMTPILLGLMAIGALLPNLTKLKLPGFEAEVSEPKPSEPNISTGP
                     RGDIGFGTSLPIVDPEPR"
BASE COUNT          378 a          598 c          575 g          510 t
ORIGIN      
        1 tggacgtctt tcatctcgcg ctctcgcaac gttcgctcga agacattttt ttgacgttaa
       61 ccagcggcca ggctgcgggg agggcgagtt gatgtcgctg attcgcgcgc tgcatgcgga
      121 gttgttgaaa ctgaagcgta cgctcgcgtt tcgcgtgatc ttcgtcttgc cgttctttgt
      181 cgcgctgctg caatttttcg tcatctggcg cacgaagaag ttcgcggccg gcttcgatct
      241 gtggcaaacg catccggaga actcgtttca gatctgggcc atcttcatga tgccgctgct
      301 gatcacgctg gagaccgcgt tgctcaacgg catcgagcat tcggacaagc agtggaaaca
      361 tctcttcgcg ttgccggtgc cgcgccgatc catttatctc gcgaagttta ttgtcgcact
      421 cggtttgatc ctcgtgagca cgatggtgct tgcgttgttg acggtaatcg tcggagtcgt
      481 ggcggtttcg ctaaagcctg agctcgcggc cataaccggg cccattcctt acttcacgat
      541 cgcgaaacaa gcaacgctcg tgtggctcgc cggctggttc atcacggcga tacacacgtg
      601 gatcagcatg cgttgggccg gctttgcgat cgcgctcggc gccggaatcg gtgggacatt
      661 cttcgcgttg ttcgccgcga gtgcgtcgtt aggcaagtat tatccgtggc tgctgccgat
      721 gaacctcttt ctcgaaggcc ggttcacaac tgcgctcgtg ctcggtatcg gcggcggcgt
      781 tgtggccgcg cttctcggct gcttcgagtt tgtccggcgc gacgtcgctt aacgcggctc
      841 cggatcgacg atcgggagcg acgtgccaaa cccgatgtca ccgcgtggtc cagtggagat
      901 gtttggctcc gacggtttcg gttcactcac ctccgcctca aagcccggca acttcaactt
      961 cgtcaggttc ggaagcagcg cgccgattgc catcaggcca agcaggatcg gcgtcatcac
     1021 gttgaacaac gtctggtcga ctgtgtattc aactttcgtc acggggccgg ttgcagaagg
     1081 ttcaactctg gttcgttggt gacccgtaaa atacgacacc cacaaccaaa tcagcatcgc
     1141 gaaacaaacg accgccagtc ccacgccgaa ccactgactg atcgtgaacg ttcgcttttg
     1201 ttgtctgacc gcctcctgca cgatgcggcc gcaacgttcc gcatcgaagc gagtccggtt
     1261 caacttcaga cattcggcga aactcttgtg cgacgatgaa taatcttcga gccggtgata
     1321 cacgatgccc gcatgaaatg cgatgtcggc gtttggcggg ctcgcctgct ttgcttcgtt
     1381 gacgtatcgc agcgcttctt cgtaaagatc gagctccttc ttcttgcgat ctttattcgt
     1441 aacgtcgccg acgcgtatca ggatctgcgc tagcagcagg taaagccgcc acggcctgtt
     1501 cggcgcgagc gtgacgagtg ctcttcgcac cactgtttca gcttcttcgt atttctctga
     1561 acgtatcaac gcgatagcca gcgcgcgata tgtctccgga tttttcggct ccacgaaaat
     1621 cgcctcgcgc gaatgccgca cggcttcttt gttgtcttct ttccaaagcg cgacgttgcc
     1681 gagctcgata taagcgcgtg cgtctttcgg attgagtttc aacgcctctt gcagtttcgc
     1741 agtcgcctca tcgtaacggc ccatctggca atagagtgag gcgagctcga tgtaactgcc
     1801 ctcggtcgga ttgagctcga tggacttcag gaaatagact tcggcatcga gaaacgcgtc
     1861 ctgtctgaag gcgatgacgc cgagacatcc ataagccttc gcattgaacg gatcgagttt
     1921 caacgccgcg cggcattgtt ctttggcttc gtcgatcagt tgcgcgcgct tcgacacctc
     1981 cagtcgcgac agctcaccgg gtgatctcac ctgccgtatc aaagcgagtg cgagattcac
     2041 gtaatactgc gcctcgtaat c
//
LOCUS       DASWTX010000603         3482 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_401397, whole genome shotgun sequence.
ACCESSION   DASWTX010000603 DASWTX010000000
VERSION     DASWTX010000603.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3482)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3482)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3482
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_401397"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..643
                     /locus_tag="VGD38_09205"
     CDS             <1..643
                     /locus_tag="VGD38_09205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728233.1"
                     /translation="NTVKSGETTVVRPVNAGPGRRMLPVALSAVALLVLACGVFGFFM
                     WKKRDRSDVMQVTVPTPTPAASPASAEATPAPSESEDENATPDEDEEETATTTKPAPA
                     PKKQERASREEATPDRRSEDPRVQVEVETHEQEAPDVPTPPNVGPDGVPRLRRPQTRV
                     MPDGRVMRILPDGSQIITMRDGTRIYVAPDGRRTVVPPRDRPNRRTPAPSPSP"
     gene            823..2406
                     /locus_tag="VGD38_09210"
     CDS             823..2406
                     /locus_tag="VGD38_09210"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEY0728234.1"
                     /translation="MAVCALLVLLSPAGVAMRAKSEPPVPSNIRLTPPAPVFSDKERV
                     AELTQRRERVAEKVGPQSFLVLFSTEPRVYANDVDYPYRQENNLYYLTNLKQKGATLV
                     LLPGNTKIREILFLPRRNALAETWTGYMYSAEEAHRISGVREIWQSSEFEPFIKSLRN
                     RQPYRPRPENIFMSDLPKDMPMTNENNSFTTLFDAAAKGEAGMYLLVPGTSGESREYR
                     QEQRFAADWAQTASGFSVRNAWPIFSQLRLVKSPMEIRILQHAIDISIEAHQRAWAIA
                     GEAKWEYEVDAIMAYTFKLRNADNWGYPDIVGCGPNATTLHYIESQGPVKPGDLLLMD
                     VGAEYDHYTADVTRTFPVNGKFSPVQAELYQIVYDAQEAVARASKPGATLSDVSRAGT
                     EVIKDGLLKVGLITDRNSMQHRMWFMHGTSHWLGMNVHDVGGGSKIVPGVVFTNEPGI
                     YIRPDALDQMPYGWKQDEWEKFKAAVRPAFEKYKGIGVRIEDDLLITADGVKWMTEAL
                     PRKLNEVEDFIAKARRQSE"
     gene            complement(2408..3265)
                     /locus_tag="VGD38_09215"
     CDS             complement(2408..3265)
                     /locus_tag="VGD38_09215"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HEY0728235.1"
                     /translation="MIPAPFTYEVPATLEEAVSLLAADPDNARVLAGGHSLIPAMKLR
                     LAQPQMLVDIARIKSLSYIREEGNQILIGATTTHYQLESSELLQGICPLLPACAKSIG
                     DVQVRNKGTIGGSVAHSDPAADWPAAVLALNADLVLVGPGGERTVKATDFFVSLFTTD
                     LKPGEILREIRIEKPSGRFGQAYQKVPHPASGFAVVGIAVHLALNDDDSCKAAQIGVT
                     GVGLNAYRAQAVEAALAGSKLDEPTITSASAKVCDGVNPNTDLYASGEYRRHLAQVHS
                     RRAIQAAAA"
     gene            complement(3262..>3482)
                     /locus_tag="VGD38_09220"
     CDS             complement(3262..>3482)
                     /locus_tag="VGD38_09220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728236.1"
                     /translation="HIPYFELDRTETPSPVNPLGVKGVGEAGTIGATPAIVGAIVDAL
                     APFGVKHLDMPVKPETVWRIINEKGGNA"
BASE COUNT          746 a         1044 c         1061 g          631 t
ORIGIN      
        1 gaacacggtc aagtcgggcg aaacgacggt cgtgaggccc gtcaacgctg gaccaggcag
       61 acgaatgttg ccggtagcgt tgtccgcggt cgcgctgctg gtgttggcgt gcggcgtgtt
      121 tggttttttc atgtggaaga agagggatcg cagcgacgtg atgcaggtga ctgttccgac
      181 gccgacgccg gccgcgagtc cggcgagtgc cgaggcaacg ccggcgccgt ctgaaagtga
      241 agacgaaaac gcgacgcctg acgaggacga agaggaaact gcaaccacga ccaagcccgc
      301 gccggcgccg aagaaacagg aacgagcttc gcgcgaggag gcgacaccgg atcggcgttc
      361 tgaggacccg cgcgttcagg ttgaagttga gacacatgag caagaggcgc cggacgttcc
      421 gacgcctccg aatgttgggc cggacggcgt gcctcggcta cgccggccgc agacgagagt
      481 gatgcccgat ggaagggtga tgcggatttt gccggacggt tcgcaaataa tcacgatgcg
      541 cgacggcacg cgtatctacg tagcgccgga tggccgccgg acggtcgtcc ccccgcgcga
      601 ccgcccgaac cgcaggacgc ccgctccaag cccctcgccg tgatgttgtg ttttcagttc
      661 gcgttttgag ttcagccttt aggctgccgc gccaaacgca agctaaagct tgaactcaaa
      721 acgcgaactc aaaacgagtt tctcagcgtt gctcgcgtcg atagcattct cgaggacaaa
      781 ctaatgcgaa atactaaaac tactcgtgtc gcttttgctc taatggccgt ctgtgcgttg
      841 cttgtgttgc tcagccccgc gggcgtggcg atgcgcgcga agagcgagcc gccggttcct
      901 tcgaacatcc gattaactcc ccccgcgccc gtcttcagcg acaaggaacg cgtcgcggag
      961 ttaacgcagc ggcgcgagcg tgtggccgag aaagtcggtc cgcaatcatt cctggtgctg
     1021 ttcagcaccg aaccgcgcgt ctacgccaac gacgtcgatt atccgtatcg tcaggaaaac
     1081 aatctctact acctcaccaa cctgaaacag aaaggcgcga cgctcgtcct gctcccgggc
     1141 aacacgaaga tccgcgaaat cctgttcctg ccgcgccgca acgcgctcgc cgaaacctgg
     1201 accggctaca tgtacagcgc ggaagaagca caccggatct ccggcgttcg cgagatctgg
     1261 cagtcgagcg agtttgaacc gttcatcaaa tcactgcgca atcgccagcc gtatcgcccg
     1321 cggccggaaa acatcttcat gtcggacctg ccgaaagaca tgccgatgac taacgagaac
     1381 aacagcttca caacgctgtt cgacgcggcg gcaaaaggcg aagcgggaat gtacttgctc
     1441 gtgccgggta cttccggcga gagccgcgag tacaggcagg agcaacgttt cgctgccgac
     1501 tgggcgcaga ccgcttccgg cttcagcgtg agaaacgcgt ggcccatctt cagccaactc
     1561 cgtctggtga agtcgccgat ggaaatacgc atcctgcaac acgcgatcga catcagcatc
     1621 gaggcgcacc agcgcgcgtg ggccatcgcc ggcgaagcga agtgggaata cgaagtcgac
     1681 gccatcatgg cttacacgtt caagctgcga aatgccgaca actggggcta tcccgacatc
     1741 gtcggctgtg gtccaaacgc gacgacgctg cactacatcg agtcgcaagg tccggtgaag
     1801 cccggcgatt tgctgttgat ggacgtcggc gccgaatacg atcactacac cgccgacgtg
     1861 acgcgcacgt ttccggtgaa cggcaagttc agtccggttc aggccgagct ttatcagatt
     1921 gtttacgacg cacaggaagc tgtggcgcgc gcttcgaaac cgggcgcaac gttgtcagac
     1981 gtgagccgcg cgggaacgga agtcatcaaa gacggactct tgaaagtcgg attgattacc
     2041 gatcgcaatt cgatgcagca tcgcatgtgg ttcatgcacg gcacgtcaca ctggctgggg
     2101 atgaacgtac acgacgttgg cggcggatcg aagatcgtgc ccggcgttgt gttcacgaac
     2161 gagccgggaa tctacattcg tccggacgcg ttggaccaga tgccctacgg ctggaaacag
     2221 gacgagtggg agaaattcaa agccgcagtc cgaccggcgt ttgaaaagta caagggtatt
     2281 ggcgtccgga tcgaggatga cctgctgatt acggctgacg gtgtgaagtg gatgaccgag
     2341 gcgttgccgc gcaagctcaa cgaggtcgaa gacttcattg cgaaagcgcg gcgccagtcg
     2401 gagtagctta cgcagcggcc gcttgaatcg cgcgccgcga gtgaacctgt gctagatggc
     2461 ggcgatactc gccggacgca taaagatccg tgttcggatt gacgccgtcg cataccttcg
     2521 ccgacgcaga tgtgatcgtc ggttcgtcga gtttcgatcc cgccagcgcg gcctcgacag
     2581 cctgcgcccg ataagcattt agaccgacac cggtcacgcc gatctgcgcc gccttgcacg
     2641 aatcgtcgtc gttcaacgcg agatgcacgg cgatgccgac aaccgcaaat cccgaagcgg
     2701 gatgcggcac cttctgataa gcctgaccga aacggccgga cggtttctcg atccggatct
     2761 ctcgcaggat ctctccgggc ttcaaatccg ttgtaaaaag gctgacgaag aagtcggtcg
     2821 ctttgacggt gcgctcgccg cctggtccaa ccagcaccag atcggcgttg agcgccaaca
     2881 ccgccgcggg ccagtcagcc gccggatcag aatgcgcaac gctgccgccg atcgttcctt
     2941 tgttgcgcac ctgcacatcg ccaatgctct tcgcacacgc gggcagcagc ggacaaatcc
     3001 cttgcaacag ttcggaagat tcgagctgat agtgcgtcgt cgtcgcgccg atgagaatct
     3061 gattgccttc ttcgcggatg taagacaacg acttgatgcg cgcgatgtcg acgagcatct
     3121 gcggttgcgc gagccgcagc ttcatcgccg gaatcaaact atggccaccg gccaaaaccc
     3181 tcgcgttgtc gggatcggcg gccagcaacg acacggcctc ttccagcgtc gcaggcactt
     3241 cataagtaaa aggtgcggga atcatgcgtt accgcctttc tcattgataa ttcgccaaac
     3301 agtttcgggt ttgaccggca tgtccagatg cttcacgccg aacggcgcca gcgcgtcgac
     3361 gatcgcgccg acaatcgccg gcgtcgcgcc gatcgttccg gcctcgccaa cgcctttaac
     3421 gccgagcggg ttcacgggcg acggcgtttc cgtgcgatcg agttcgaagt acggaatgtg
     3481 cg
//
LOCUS       DASWTX010000604         3281 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_292377, whole genome shotgun sequence.
ACCESSION   DASWTX010000604 DASWTX010000000
VERSION     DASWTX010000604.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3281)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3281)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3281
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292377"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..262)
                     /locus_tag="VGD38_09225"
     CDS             complement(<1..262)
                     /locus_tag="VGD38_09225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728237.1"
                     /translation="MAVQDRRLEEPESRKTLIIVIAVAAAVVIALFFYLLMRAGGSSG
                     GGEPRLADASRAGTPEFEQYKTQVVLDEPEATEAKRALGDTVM"
     gene            complement(275..658)
                     /locus_tag="VGD38_09230"
     CDS             complement(275..658)
                     /locus_tag="VGD38_09230"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0728238.1"
                     /translation="MTTQGEDVTVLLVEDTEDNRFMMKRLLEMSGYRVVEATNGEEAV
                     RIAEEECPGLILMDLSLPMIDGLAATRLIRKLPKCQKTPIIAVSAHDTSDFLADAIEA
                     GCNSYITKPIDFNELEELIVHELGK"
     gene            912..1562
                     /locus_tag="VGD38_09235"
     CDS             912..1562
                     /locus_tag="VGD38_09235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728239.1"
                     /translation="MEDSETLQDLGRASIQIVHDLKNQINGLKLYATFLRRRIEKGER
                     PEDERETIEKLMAGLDRAASDLATIVEYGRKIELKKQPGFEVQKVLRTVCSTFDGPGG
                     EIVVDSSSDSVQGSFDPLKLTDAFKWISAAAIKNRRAPEDGLGAEPISVKIAAVDSKD
                     ARIEWSGLRKIDHDPFHSFMGSEEIRLALAAKIIEAHGGSAKLAEDRFVVQLPLSE"
     gene            1644..3032
                     /locus_tag="VGD38_09240"
     CDS             1644..3032
                     /locus_tag="VGD38_09240"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY0728240.1"
                     /translation="MENKEVRILVVDDEPTMADSLRQNFIEEGYSVDTAATGAAAIEL
                     FDQGGHHLAICDLQLPDMDGLEVLRHMKDARPTTEVIVVTGYGSVQKAVEATKAGAFF
                     FVEKPFDFEELQLLVDKALERRELVAETANMRRQLSTRAEYFNIIGSSKPMQTIYETI
                     ESVAKSDANVLIVGESGTGKELIANAIHYQSLRSKKPFIKVNCAALPKELIESELFGH
                     TKGAFTGAHADKEGLVQHAAGGSLMLDEIAEMPIELQPKLLRVLQERSYRKIGSEKTY
                     AVDFRLVCSTNRPPADAIRDGLLRDDLFYRISTITIHVPPLRERSEDIQLLTEHFLHM
                     YAQKYERPITGVSQAAYQRLFSHPWPGNVRELQNVIERAVLLAKDKQIEPIDLPFDNG
                     TVPEGTSANVQWDVPPNMTLEDIERLVIERTLQRTGGNKQAAANLLGIYRPRLYSKIR
                     KYNIDVPSLVSA"
     gene            3062..>3281
                     /locus_tag="VGD38_09245"
     CDS             3062..>3281
                     /locus_tag="VGD38_09245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728241.1"
                     /translation="MSTRLSPSSNSIRLRGLDALRGMAAMAIVFYHATDQSQAALPNN
                     LLYYPARLVQLASSQAYISVFLFFVISGF"
BASE COUNT          762 a          865 c          930 g          724 t
ORIGIN      
        1 tcatgactgt gtcgccaagc gcgcgcttcg cttcagttgc ttccggctcg tcgagcacga
       61 cttgcgtctt gtactgctcg aactccggcg tgcctgcgcg actcgcatcg gcaagtcttg
      121 gttcgccacc tccggacgag ccacccgcgc gcatgagcag gtaaaagaag agtgcaatga
      181 caaccgccgc ggccacagcg atgacgatga ttagtgtttt acgcgactcg ggttcttcga
      241 gacggcgatc ctgaactgcc atagtgaacg aattttactt gcctagctcg tgcacaatca
      301 attcttcaag ctcgttgaag tcgattggct ttgtaatgta actgttgcag cccgcctcaa
      361 tggcatccgc gagaaagtcg gaagtgtcgt gcgccgaaac ggcgatgatg ggagttttct
      421 gacacttcgg gagcttgcgg atgaggcgcg tggccgccaa accgtcgatc atcggcaggc
      481 tcaggtccat caaaattaga ccaggacatt cctcctcagc gatccggacc gcctcctcgc
      541 cgttcgtggc ctccactacc cggtaaccac tcatctccaa caaacgcttc atcataaagc
      601 ggttgtcttc cgtgtcctcc accagtaata ccgtcacatc ctcaccctgc gttgtcattc
      661 gtttcggtgc tcccacgtca ggtaaaaagc gggtcctgac cacacccgag tccttccaag
      721 ttattgattt tactgtatca ctagaatacg cgcgcctttt ttgttaacat cccgcatcga
      781 aacgcaacac ccaaagatct acggccagcg ttcaattcgt acactcgggc tggttgtgag
      841 gtcccctccc ccggtggccc ccaagaagag tttgtagagc gacgtgtccg atgaaggtat
      901 caatgtcgag aatggaagac agtgagacgc ttcaagacct cggtcgagct tcaattcaaa
      961 tcgttcatga tctaaagaac cagataaatg gtctcaaact ctatgccacg ttcctgcggc
     1021 ggcggatcga gaagggcgaa cggcccgaag acgagcggga aacgatagag aagttgatgg
     1081 cgggtttaga ccgggcggcg agtgatttgg cgacgatcgt cgaatacggg cggaagattg
     1141 agttgaaaaa gcagccgggg tttgaagtgc agaaggtgtt gcgcacggtt tgttcgacgt
     1201 tcgacggtcc aggtggtgag attgtcgtgg attcgagttc ggattcagtt cagggcagtt
     1261 ttgatcccct gaaactgacg gatgcgttca agtggatctc cgcggcggcg attaagaacc
     1321 gccgggcgcc cgaagacggg ctgggagcgg aaccgatttc cgtaaaaata gcggcggtgg
     1381 acagcaaaga cgcgcgtatc gaatggtccg gtttacgcaa aatcgatcac gatccgtttc
     1441 actcgtttat gggcagtgaa gagatcaggt tggcgttggc ggcaaaaatt atcgaggccc
     1501 atggcgggtc ggcgaaactc gcggaagatc gtttcgtagt gcaacttccg ctttcagaat
     1561 aatccccgat taatagtcat tatcgtaagg agcaaaattt gatgggccct caaggcacgg
     1621 cgacttccag agaggagaat aaggtggaaa acaaagaggt gcggattctt gttgtagacg
     1681 acgagccgac gatggcggat tctctgcggc agaattttat tgaagaaggt tattcggtag
     1741 ataccgcggc taccggagca gcggccatcg aactcttcga tcaaggtgga catcatctgg
     1801 cgatctgcga tttgcaatta ccggacatgg acgggcttga agttttgcgt cacatgaaag
     1861 acgcgcgacc gacaacggaa gtgatcgtcg ttacgggtta tggttcggtg cagaaggctg
     1921 tcgaagcgac caaggccggc gcgtttttct tcgtcgaaaa gccgtttgat tttgaagagt
     1981 tgcaactgct cgtcgacaag gcgctcgaac gccgcgagct cgttgctgaa acggcaaaca
     2041 tgcggcgcca gctatcaacg cgtgccgagt atttcaacat catcggctcg tcgaagccga
     2101 tgcaaacgat ctacgaaacg atcgagtcag tagcgaagtc agacgcaaat gtgttgattg
     2161 tgggtgagtc gggaacgggc aaggagttga ttgcgaacgc gattcactat caatcgctgc
     2221 gttcgaagaa accgtttatc aaagtaaact gcgcggcgct gccgaaagag ctgatcgagt
     2281 ctgaactgtt tggtcacacg aaaggcgcgt tcaccggcgc acacgcggac aaggaagggt
     2341 tggtccaaca cgccgccggc ggttcgctga tgctcgacga aatcgccgag atgccgatcg
     2401 agttgcaacc gaagctcctg cgcgtgttgc aggaaagaag ctatcgcaag atcggttcgg
     2461 aaaagactta cgccgtcgac ttccggctcg tgtgttcgac caatcgcccg cccgcagacg
     2521 cgattcgcga tggactactg cgcgacgacc tcttctatcg catctcgaca atcacgattc
     2581 acgtgccgcc gctacgcgag cgcagtgaag atattcaact tttgactgag catttcctcc
     2641 acatgtatgc tcaaaaatac gagcgcccga tcacgggtgt ttcgcaggcc gcgtatcaac
     2701 gtttgttcag tcatccatgg ccgggcaacg tgcgcgagct gcagaacgtg atcgagcggg
     2761 cggtgttgct ggcgaaggac aaacagatcg aaccgatcga tctgcctttc gacaacggca
     2821 cggtaccgga aggcacgtca gccaacgttc agtgggacgt tccacctaac atgacgctgg
     2881 aagacatcga gcggctggtg atcgagcgca cgctccagcg cacgggtgga aacaaacaag
     2941 cggctgcaaa tcttttgggc atctaccggc cgcgcctgta cagcaagatc agaaaataca
     3001 atatcgatgt gccgtcgttg gtgtcagcgt aagcgataat cgcttacggt tcgtcgcctg
     3061 aatgtctacc cgcttatccc cctcttccaa tagcatccgc ctgcgcggtc tcgacgcgct
     3121 gcgcgggatg gctgctatgg ccatcgtttt ctatcacgcg acggatcaga gccaggcggc
     3181 actgccgaat aacctgcttt actatccggc gcggttggtc cagctcgcga gttcacaagc
     3241 gtacatcagt gtatttctgt tctttgtaat ttccggtttc t
//
LOCUS       DASWTX010000605         2163 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_245583, whole genome shotgun sequence.
ACCESSION   DASWTX010000605 DASWTX010000000
VERSION     DASWTX010000605.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245583"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..724)
                     /locus_tag="VGD38_09250"
     CDS             complement(<1..724)
                     /locus_tag="VGD38_09250"
                     /inference="COORDINATES: protein motif:HMM:NF015557.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HEY0728242.1"
                     /translation="MTAQIGILLALLLVALVLFCLERIPLEIVAILLVMALVLTNTLT
                     PAEAFAGFGNDIVITIAGLFILTGGLAKTRVIDLVGRRLHRTAGDSEFRIAALIMLAA
                     AVCAAVMKNTTTTAMFLPVVLGIAARRNISPSRLLMPLAFGAILGGTCTLIGTSTNLA
                     VSGALPRYGIQPFTMFELTSVGIVIVAAGMLYMLLIGLRLLPRRESADSLTEQYHVRQ
                     YVTEVIVLDNSPLIGKSLAEARI"
     gene            804..1355
                     /locus_tag="VGD38_09255"
     CDS             804..1355
                     /locus_tag="VGD38_09255"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_except=(pos:1023..1025,aa:Sec)
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HEY0728243.1"
                     /translation="MYTRTLLSLVLLAVFSVVALGQQQPPVKTHLKVGDAAPDFTLRA
                     TDGKTYKLSDFKGKKNVVLAIYVLAFTGGUTKELKAYQADIAKFESTETQVFGMSVDS
                     VPANREFAKQLEITFPLLSDFKRTVVKSYGVYNEEQGFGNRATFLIDKEGIIRHIDEG
                     NVAVDPTTVVEACNVLQRKKASQ"
     gene            1443..>2163
                     /locus_tag="VGD38_09260"
     CDS             1443..>2163
                     /locus_tag="VGD38_09260"
                     /inference="COORDINATES: protein motif:HMM:NF014827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase dimerization
                     domain-containing protein"
                     /protein_id="HEY0728244.1"
                     /translation="MEITKVATKTDHETVLIGRDATSGYHGIIAIHNTSLGPAVGGTR
                     FWNYASEEEALTDALRLSHGMTYKNALAGLPLGGGKSIIIGDNKTPNREALLRAHGRF
                     VNTLEGRYITAEDVGTSPADMEIVRTETKYAAGLLGGSGDPSPFTARGVFRAIQASSK
                     FLWDTDELSGRTVALQGCGNVGYNLAKLLHVAGAKLIVTDVDESNLSRVVAETGAETV
                     HPNEIFSVEADVFAPCALGGIL"
BASE COUNT          529 a          616 c          584 g          434 t
ORIGIN      
        1 cgattcgcgc ctcggccagc gacttgccaa tcaacggcga gttgtcgagc acgatgactt
       61 ccgtcacgta ttgcctgacg tgatactgct cggtaaggga gtcagccgat tctcgacgcg
      121 gcagcaatcg aagaccgatc agcagcatgt acaacatgcc ggccgcaaca atcacgattc
      181 caacgctcgt cagttcgaac atcgtaaacg gctgtattcc gtaacgcggc aaagcaccgc
      241 tgaccgcgag attcgttgac gttccgatca acgtgcaggt gccgccgaga attgcgccaa
      301 acgcgagtgg cattaacaat cttgacggac ttatgtttct ccgggccgcg attcccaaaa
      361 cgaccggcag aaacatcgcc gtcgtcgtcg tgttcttcat caccgccgca caaaccgcag
      421 cggccaacat gatcagtgcc gcgatgcgaa actcactgtc gcccgcggtc cggtgcaaac
      481 gccgtccgac cagatcgatc acgcgtgtct ttgcgagccc gcccgttaaa atgaataggc
      541 cggcaattgt gatcacgatg tcgttgccga agccggcaaa agcttcggca ggcgttaacg
      601 tgttggtgag gaccagcgcc atcactaaaa gtatggcgac gatctcgaga ggtatgcgct
      661 ccagacaaaa taagacgagc gcgaccagca ataatgcgag cagaattcca atctgagctg
      721 tcattcacct tgactccatg cgtccttgcg cataaattca actcgcaaac catacccctc
      781 tcgaatggca aggagaccac agaatgtaca cacgaacgtt gctttccctc gtgctgctcg
      841 ctgtgtttag cgttgtcgca ctgggccaac agcaacctcc agtcaaaaca cacttaaaag
      901 tcggcgacgc ggcccctgac tttacgctgc gcgccaccga cggaaagacc tacaaactca
      961 gcgacttcaa aggcaagaaa aacgtcgtcc tggcgattta tgtactcgcc ttcaccggtg
     1021 gttgaacgaa ggaattgaag gcgtatcagg ctgatatcgc caaattcgaa tcaaccgaaa
     1081 ctcaggtgtt cggcatgagt gtagacagtg ttcccgccaa ccgcgagttt gccaaacagc
     1141 tcgaaattac gtttccacta ctcagcgatt tcaaacgcac cgtcgttaaa tcctacggcg
     1201 tttacaacga agagcagggg tttggcaacc gggcaacctt cctgatcgat aaagaaggca
     1261 tcatccggca cattgatgaa ggaaatgttg ccgtcgatcc gacgaccgtc gtggaggcgt
     1321 gtaacgtgct ccagcgcaag aaagcgtcgc agtagcaccc gctccagttc gggatcgaga
     1381 ttgggtgcaa caactccgat tcggcaaacg taagagtgtg ttgcacccaa gacaaccgga
     1441 ctatggaaat cacaaaagta gccacgaaaa ctgatcacga gaccgtcctg atcgggcgag
     1501 atgccacatc tggttaccac ggcatcatcg ccatccacaa cacctcgctt ggtccagccg
     1561 ttggcggcac gcgcttttgg aattacgcca gcgaagaaga agcgctcacc gacgccttac
     1621 gcctctcgca cggaatgact tacaagaacg cgctggcggg gctgccgctc ggcggcggca
     1681 agtcgatcat cattggcgac aacaagacgc cgaatcgcga agcgctgctg cgcgcgcacg
     1741 gacgttttgt taatacgttg gaaggacggt acatcactgc tgaagatgtt gggaccagtc
     1801 cggcggacat ggagatcgtg cgcactgaga ccaaatacgc ggcgggtctt ctcggtggct
     1861 caggtgatcc atcgccgttt accgcgcgtg gagtgtttcg tgcgattcag gcgtcgtcca
     1921 aatttttgtg ggacaccgat gaattatcag gacgcacggt tgcgctgcag ggatgtggca
     1981 acgtgggcta caacctggcg aagctgcttc atgtagcggg cgcgaaactc atcgtcactg
     2041 atgttgacga aagcaacctg tcgcgtgttg ttgctgaaac gggcgcagag accgttcatc
     2101 ccaacgagat cttcagcgtt gaagcggacg tctttgctcc gtgtgcgctc ggcggcattc
     2161 tca
//
LOCUS       DASWTX010000606         1518 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_379271, whole genome shotgun sequence.
ACCESSION   DASWTX010000606 DASWTX010000000
VERSION     DASWTX010000606.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_379271"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..716)
                     /locus_tag="VGD38_09265"
     CDS             complement(<1..716)
                     /locus_tag="VGD38_09265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728245.1"
                     /translation="MIGRSFRFISAFIFFFVLLGYVQSASAQSIVLYASQAPVKVGNW
                     SVVADSTAAGGFRLASADRGGSKIVTPLVAPASYFEMTFYATAGQPYRLWIRGKAEGN
                     SPYNDSVHIQFSGSVTSGGASTFRIGTGSSTEYNLEDCSGCGLSGWGWQDNGWGVGVF
                     GPTIYFQSTGTQTIRIQEREDGLSIDQIVLSPSTYLLSAPGTLKNDGVILTANAGAPA
                     PTPTPTPTPTPTPTPTPTPTP"
     gene            complement(1163..>1518)
                     /locus_tag="VGD38_09270"
     CDS             complement(1163..>1518)
                     /locus_tag="VGD38_09270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728246.1"
                     /translation="GSNRAVALHSTQFTRDPFPISSPFNPGSDKRTRVVLFCTNLNLQ
                     PGESISAVTAKAVSSFGGVYNLPVEYVGKVSGLSWLSNVVVRLPDDPALAGNVSVAVA
                     LRGVGSNSVTIAISP"
BASE COUNT          361 a          425 c          415 g          317 t
ORIGIN      
        1 ggcgttggcg ttggcgttgg tgttggagtg ggcgtgggcg tcggcgtggg cgtcggggtt
       61 ggtgccggag cgcctgcgtt tgccgtcaaa atcacgccgt cgttcttcaa cgtgcccggc
      121 gcagataaaa gataagtgct cggcgacagc acgatctgat cgatcgacag tccgtcctcg
      181 cgctcttgaa ttctgatcgt ttgtgttccg gtggattgaa agtaaatggt cgggccaaat
      241 actcccactc cccacccgtt atcctgccag ccccagcctg aaagaccaca gccggagcaa
      301 tcttcgaggt tgtactccgt gcttgagccg gtaccgatgc gaaaggtcga cgcaccgccg
      361 ctggtaacac tgccggaaaa ctgtatgtga accgagtcgt tgtacggcga attgccttca
      421 gctttgccac gtatccacag ccgatacggc tgtccggcgg tggcatagaa cgtcatctcg
      481 aagtagctcg ccggcgcgac caggggcgtc acgatctttg atccgcctcg atctgcacta
      541 gccaggcgga atcctccggc cgcggttgaa tcggccacaa cgctccagtt accgaccttc
      601 accggcgcct gcgatgcata taaaacgatc gactgagcgg aagctgattg aacgtaaccg
      661 agaaggacga agaagaaaat gaatgcggaa atgaaacgga acgatctacc tatcaatgta
      721 tctatctccc tttaggtcgt tggtagtcgg gttaacaaaa acatggacca ccacgtcgca
      781 cacacgcagc cttttgcaat tcactcaacg cgaccgcgtt gagcagaccg ctatgcggac
      841 gggactaaag ctcgacggtg accgagaggg ttgccgctga tcgccgaacg ctaggtttta
      901 gtgttttcga cctcgaagaa ctgagatcgt tgaatcgtca gaacgggtag aacattgtcc
      961 taacaggttt tgtcgagaag caggcgcaca ggcggatgga ttgaaaatct tcctacgtgt
     1021 tttgagcccc tccaactcaa ctggtgcacc ctatcacgat gtcaagaaag tgtcaaaatt
     1081 ctaactcgaa tcttactcgg atcgtgaaga atacaacttg ttcgcaaagg tatcgcaaca
     1141 agaggcgggc caagccacta tactacgggc tgatcgctat tgtcacggaa ttacttccaa
     1201 cgcctcttaa agcgactgcc accgacacgt ttcccgccag cgcgggatcg tccggcagcc
     1261 tcacaacaac gttggaaagc cacgataaac cactgacttt cccgacatat tcgaccggca
     1321 agttgtaaac gccgccaaac gagctcacgg cttttgccgt cacggcagag atcgactcac
     1381 ccggttgcag gttcaggttc gtgcagaaca gcacgacccg cgtgcgcttg tctgagccgg
     1441 gattaaacgg cgaactaatc ggaaacggat cccgggtgaa ctgtgtcgag tgcagcgcca
     1501 ccgcacgatt cgaacccg
//
LOCUS       DASWTX010000607         3191 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_74057, whole genome shotgun sequence.
ACCESSION   DASWTX010000607 DASWTX010000000
VERSION     DASWTX010000607.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3191
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74057"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2036
                     /locus_tag="VGD38_09275"
     CDS             <1..2036
                     /locus_tag="VGD38_09275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728247.1"
                     /translation="LSAVIGVKSKNWLNLFNQVHELTDFNKLQVYLDNLAKSFIEEYT
                     GKAFEELADHTKLDEVINLIGEVIDQYNEVGDNAVTLFDKYFNIATGAVDAKLSEALQ
                     FIKNVTSLDQLKGQIDSTVWDVVNQLTDGDPLDWLLGKVEIDGHTLNSLDEIKARVDK
                     VLDLIQNEAHKEIRRLIALAKSKFPLDRFISELGHIDWMTLQTLTERRLTGFVERLIG
                     QSIKGLSNTQLGKAVTKFHGVLDGIDNFKNTLYKKIKQTLDQSFSFQLHAEYSRASEN
                     DALLDFELNLNTAIGQGLMKKAGGGDFAEVLAAYGTGAVKLNKGVLSHKVTRQTKFSV
                     NITGWHLGWNYQGLDRLITEAEQRIIPDANGQLSIITTFDMQKERERKRNGERVYTNL
                     LLRFIGESHGVLDFDKANQVYLVDAITRMSSKYTLVFQDPSTTEHELAQYLSFADDFG
                     LAASDDAALQILEPLLPTDAQGNFGETSITYDVRFTEEGLRSLFTQPFGLSEEMHLRR
                     TMRLIVLANYLNKGATLTTRAWCYWTPGIQELWAKGQADFTNHSARVFSPIAPSPLKN
                     LAAPAKATLSQTELKQLSTLYFIEESVVKGMRKLATLIQSKQKLSPRDFEKAMGDFGS
                     ALKSYDNFDEGDNTIFAIFDKLIVRYANGQHRNSSLELKSTLNGRTVTKMLVA"
     gene            2063..2785
                     /locus_tag="VGD38_09280"
     CDS             2063..2785
                     /locus_tag="VGD38_09280"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: protein motif:HMM:NF013661.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEY0728248.1"
                     /translation="MAGQPNWTELSGKHIKNGRTKVLGIVLHDTAGNGTHGDTEYLAN
                     PSDGRKVCVDFTVERDGSIWKLNPDLDKFYTPHAGRDTKFKDKVNNAVTRATIGIEIC
                     QHRNLTLSPTYTTAQVKSVANLCAWLVNKYKLTTSDITTHRNIITDGSRSDPRRFPFE
                     GNDGFWQFYWEAQGDGENHEVADMMAKIPQNGEYVVKQGDTLSKIAKALLGKANRWPE
                     IKTLNSLPGTTIVPGQVLKIPA"
     gene            complement(2832..3167)
                     /locus_tag="VGD38_09285"
     CDS             complement(2832..3167)
                     /locus_tag="VGD38_09285"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY0728249.1"
                     /translation="MTFDVQRVINNFSADAVLEDPVGTPPMQGTQAITAYLETFPTLF
                     NQLKLYSLDIKVRGQEAAVKWRIRFTTKSGHVFFLEGIGFFKLNQQGKIELEREFFDL
                     EYFIAELQK"
BASE COUNT          836 a          878 c          832 g          645 t
ORIGIN      
        1 tcttgagcgc ggtgatcggc gtcaagtcaa agaactggct caacctgttc aatcaggtgc
       61 acgagctcac cgatttcaac aagctccagg tctatctcga caacctggcg aaatcgttta
      121 ttgaagaata cacaggcaaa gcgtttgagg aacttgccga tcacaccaag ctcgacgagg
      181 tcattaatct gattggcgag gtaatcgatc agtacaacga agtgggcgac aatgccgtaa
      241 ctctcttcga caagtatttc aacatcgcta cgggtgcggt cgacgcgaag ctaagcgagg
      301 cccttcagtt catcaagaac gtcacttccc tggaccaact gaaaggacaa atcgatagca
      361 ccgtttggga tgttgttaac caactcacgg atggagatcc cctcgactgg ctcctgggca
      421 aggtcgagat tgacggacac actctcaact ccctggatga gatcaaagcc cgcgtcgata
      481 aagtattgga cctcattcaa aacgaggccc acaaagaaat ccggcgcctc atcgcactcg
      541 caaaatccaa gttcccgctt gatcggttca tcagcgagct tggccacatc gactggatga
      601 ccctgcagac tctcaccgag cgccggctca cgggctttgt cgagcgtttg attggtcaat
      661 ccatcaaagg actcagcaac acccagctcg gcaaggcagt cacgaagttc cacggcgttc
      721 tcgacggtat cgacaacttc aagaacacac tctacaaaaa gatcaagcag actctggacc
      781 agagtttctc attccaactc cacgccgaat acagccgtgc cagtgagaac gatgcgttgt
      841 tggattttga gttgaacctg aataccgcta tcggtcaggg cctgatgaaa aaggcgggcg
      901 gaggagactt cgccgaagtt ctggccgcgt acggcaccgg ggccgtcaaa ttaaataagg
      961 gcgtactgag tcacaaggtc actcgccaga cgaagttttc agtgaacatt accggctggc
     1021 atctcggctg gaattatcag ggattggacc ggctgatcac cgaggcggaa caacgcatca
     1081 tccccgacgc caacggtcag ctcagcatca ttacaacctt cgacatgcag aaggagcgcg
     1141 agcgaaagcg caacggcgaa cgtgtctaca caaaccttct gcttcgattc atcggcgaat
     1201 cgcacggcgt actcgacttc gacaaagcca accaggttta tctcgtcgac gccataacgc
     1261 gaatgtcttc caagtacacg ctggttttcc aggatcctag tacgacggag cacgagctgg
     1321 cgcagtacct cagtttcgct gatgattttg gtctcgccgc atccgacgac gcagcacttc
     1381 aaatactgga gccgttattg cccaccgacg cgcagggtaa cttcggtgag acctcgatta
     1441 cttacgacgt gagatttacg gaagaggggc ttcgttcact cttcacgcag ccgtttgggt
     1501 tatcggaaga gatgcacctc cgccgcacca tgcgtctcat cgtgctcgct aactatctta
     1561 ataaaggggc aacgctcacc acgcgggcat ggtgctactg gactcccggg attcaggaac
     1621 tctgggccaa ggggcaggcg gactttacga atcactcggc gcgggtattc agcccgatcg
     1681 ctccatcgcc actgaagaac ctggcagcgc cggcgaaagc cacgttgagc caaacggaac
     1741 tcaaacaact gagcaccctt tacttcattg aggagagcgt cgttaaaggc atgcggaaac
     1801 tcgcgacgct gatccagtcg aaacaaaagc ttagcccgag agattttgaa aaggcgatgg
     1861 gcgactttgg ctcggcactc aagtcgtacg acaactttga tgaaggcgat aacactatct
     1921 tcgcgatctt cgacaagctg atcgttcgat acgcaaatgg ccaacatcgg aactccagtc
     1981 tcgagctgaa gtcgaccttg aacggccgca cagtaacgaa aatgttggtt gcttagaaaa
     2041 taaagctgca aaggagaagt ttatggcggg acaacctaac tggaccgaac ttagcggtaa
     2101 acacatcaaa aatggccgga cgaaagtttt gggaatcgtt ttgcacgaca cggccggtaa
     2161 tggcactcat ggcgatactg aatacctcgc caatccgagc gacgggcgaa aagtctgtgt
     2221 ggattttacc gtcgaacgcg acgggagcat ttggaaactc aatcccgacc tggacaagtt
     2281 ctacactccg catgcggggc gggatacgaa gttcaaggac aaggtcaaca acgccgtaac
     2341 gcgcgcaacg atcggcatcg agatctgcca acacagaaat ctcactctgt cgcccacgta
     2401 tacgacggcg caagtgaaga gcgtcgcgaa cttgtgcgcg tggctggtga acaaatacaa
     2461 actgaccacc agcgacatca ccacgcaccg aaacatcatc accgacggtt cgcgcagcga
     2521 cccgagacgt tttccgtttg aaggtaatga cggcttttgg cagttctact gggaagccca
     2581 gggcgacggc gaaaaccacg aggtcgccga catgatggca aagattcccc agaacggcga
     2641 gtacgtcgtc aaacaaggcg acacgctctc caagatcgcg aaagcacttc tcggcaaagc
     2701 gaaccgctgg ccggagatta aaacgctcaa ctcccttccc ggaacgacga tcgtgcccgg
     2761 acaggtgctg aagattccgg cgtaaagagg ccaatgcgct gagtttggca aaggcctctt
     2821 tgccaatcat gtcacttctg caattcggcg atgaaatact cgagatcgaa gaactcccgc
     2881 tcgagttcga ttttgccctg ttggttcaac ttgaagaagc cgatgccttc gagaaagaag
     2941 acatgtccgc tcttggtcgt aaaacgaatt cgccatttga cggccgcttc ctgaccgcgc
     3001 accttgatgt ccagcgagta gagcttcaac tgattgaaga gcgtggggaa cgtctccaaa
     3061 taagccgtga tcgcttgtgt tccctgcatc ggcggggttc cgaccggatc ctcgagcaca
     3121 gcgtcagcgg agaaattgtt tatcactcgc tggacgtcaa acgtcactca tccggcgaag
     3181 gcgtcttcga t
//
LOCUS       DASWTX010000608         1684 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_31331, whole genome shotgun sequence.
ACCESSION   DASWTX010000608 DASWTX010000000
VERSION     DASWTX010000608.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1684
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31331"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1684)
                     /locus_tag="VGD38_09290"
     CDS             complement(<1..>1684)
                     /locus_tag="VGD38_09290"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY0728250.1"
                     /translation="AILRPQGQLETAEQYANLIVGGTNGAPIYLRDVATVKDSVQDER
                     VNMRFWVRGRTVPSATVIVAVSRRAGANAVDVSKSIYETLPLINQELPGSIFITPIYD
                     RSQSIVHSVADVQITLIIAFVLVVIVIFAFLGRVTDTLIPVVALPLSLLITFIAMRAI
                     GYSLDNLSLMALTLAIGFLVDDAIVFLENTVRRMERGEQPFEAAINSAKEISFTIISM
                     TISLAAVFIPLVFMTGLVGRIFREFAITIVIAILASGLVSLTLTPLMCARMLSGRGEG
                     SKKTWVERVIGGIEKRILYMYGGSLWWFLRHRWVSVVIWVVCLAGTIYLFMIVPKTFL
                     PPGDSGVIFGAFIAKEGSSPKQMREYQDRVDEMLHNDPNVVTDFTMTGATGFLASNQG
                     ITFTFIGPPEGRRPIDEVTAEMMGKLNTIPGLMTFLRPFPVLEISTGVTSQQQGQYAF
                     TVSGANPNQVYDVGQRLMAKMMEYPGFLSVSSDYYNNTPNLNIEIKRDEAKTYGVSEA
                     RILSLLRTAYSQNYSYLIKKPEDQYQVILEMDDSVREKPEDLALLYIKSDDGR"
BASE COUNT          370 a          503 c          471 g          340 t
ORIGIN      
        1 tgcggccgtc gtccgacttg atgtagagca aggccaggtc ttccggcttc tcgcgcaccg
       61 aatcgtccat ttccagaatg acctgatact ggtcctccgg cttcttgatc aggtaggaat
      121 agttttgcga atacgccgtg cgcaacagcg agaggatgcg tgcttccgac acaccgtaag
      181 tcttcgcctc atcgcgcttg atctcgatgt tcaggtttgg cgtgttgttg tagtagtccg
      241 acgaaacgct gagaaagccg ggatactcca tcatcttggc catcagtctc tggcccacgt
      301 cataaacctg gttcggattc gcgccggaaa ccgtaaacgc gtactgtccc tgttgctgac
      361 tggttacgcc cgtgctgatc tcgagcaccg ggaacgggcg caggaacgtc atcaatcccg
      421 gaatcgtgtt cagcttgccc atcatctccg ccgtgacttc gtcgatggga cgtcgccctt
      481 ccggtggtcc gatgaacgtg aacgtgatcc cctgattcga cgccagaaaa ccggtcgcgc
      541 ccgtcatcgt aaagtcagtc acgacgttcg gatcgttgtg cagcatctcg tcgacgcgat
      601 cctgatactc gcgcatctgc tttggcgacg agccttcctt cgcgataaaa gcgccgaaga
      661 tcacgccgct gtcgcccggc ggtagaaatg tttttggaac gatcatgaac aggtagatcg
      721 tgcccgccaa acagacgacc cagatcacga cggagaccca gcgatgccgc aggaaccacc
      781 agagcgaccc gccatacatg tacaaaatcc gcttttcaat gccgccgatg acgcgttcca
      841 cccacgtctt tttcgaaccc tcaccgcggc cgctcaacat gcgcgcacac atcagcggcg
      901 tcagcgtcaa cgacaccaga ccggaagcaa ggatcgcgat cacgatcgtg attgcaaact
      961 cgcgaaagat tcgtccgacg aggccggtca tgaacacgag tggaataaac actgccgcga
     1021 gcgagatcgt catcgagatg atcgtgaagc tgatctcttt cgcgctgttg atggccgctt
     1081 caaacggttg ctcgccgcgt tccattcgcc gcacggtgtt ttcgagaaag acgatcgcgt
     1141 cgtcaacgag aaatccgatc gcgagcgtta gcgccatcaa cgaaagattg tcgagactgt
     1201 agccgattgc gcgcatcgcg atgaacgtga tcagcaacga cagcggcaga gcgacgacgg
     1261 gaatcagcgt gtcagtgacg cggccgagga aggcaaagat cacgatcacg accagcacga
     1321 aggcgataat cagcgttatc tgcacgtccg caaccgagtg aacgatgctc tgcgaccggt
     1381 cataaatcgg agtgatgaaa atcgagcccg gcagctcctg gttgatcagc ggcaacgttt
     1441 catagatcga cttcgaaacg tccaccgcgt tggcgcccgc gcgacggctc acggcgacga
     1501 tcactgtcgc cgaaggaacc gtgcggccgc gcacccagaa acgcatgttt acgcgttcgt
     1561 cctgcaccga gtctttcacg gttgcgacgt cgcgtaagta gatcggcgcg ccgttcgtgc
     1621 cgccgacgat caggttcgca tactgttcgg cggtttcgag ttggccttgc ggccggagaa
     1681 tcgc
//
LOCUS       DASWTX010000609         3280 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_74073, whole genome shotgun sequence.
ACCESSION   DASWTX010000609 DASWTX010000000
VERSION     DASWTX010000609.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3280)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3280)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3280
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74073"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1414
                     /locus_tag="VGD38_09295"
     CDS             <1..1414
                     /locus_tag="VGD38_09295"
                     /inference="COORDINATES: protein motif:HMM:NF016201.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SpoVR family protein"
                     /protein_id="HEY0728251.1"
                     /translation="ELERAVEQIWEVARGFGLDPYPTNFEIVPATVMYEVGSYALPGR
                     YSHWTFGKAYHRMKTMYDFGLSKIYEVVINTNPSYGFLLETNSPIQNKMVIAHVLGHV
                     DFFKNNTYFSKTNRRMVERVSTHAQRMREYEFKYGRKTVERFLDSVLAIEEHIDPYFF
                     IKRDVSIAEEKRREEYRRKDGRYDDLWLLDQRREQRSELNGEGQTEEKKKPSQERLPE
                     KDLLFYLMKYSPSLAPWQRDAIAMVHEEMEYFVPQMQTKIMNEGWASIWHARIMRELD
                     LTDNEHIEFANLHSGVVSPQKGQLNPYYLGYKIYEDIERRWNEPSDEERERFGRHGGE
                     GRDKIFEVRELENDVSFLRNYLTEELCEELDLFVFELVEEEEWTITEKRWEKVRDQLV
                     SNMTNFGFPYLQVEDGDYNGNRELYLKHRFEGTELDMRYARKALEHVYVLWGRPVHLE
                     TIVDDEATVMHFNGNEHAED"
     gene            complement(1558..>3280)
                     /locus_tag="VGD38_09300"
     CDS             complement(1558..>3280)
                     /locus_tag="VGD38_09300"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY0728252.1"
                     /translation="VVIEIEEQPAVFTLEESLAKKTIIWGEDNVFKKFLVDKGNVDDS
                     WTSADFIVEGEYETGAQEQLYIENNGAIAIANPTEGVTVWGSMQCPYYVHKSLVKLFD
                     LPEDKIRVIQTETGGGFGGKEEYPSLITGHAALLAWKSGKPVKLIYDRAEDMVATTKR
                     HPSRTRHKTAVTKDGKLLAMEIDFVIDGGAYCTLSPVVLSRGTIHAAGPYVCPNVRIH
                     SRAVATNVPPHGAFRGFGAPQSIFALERHMDKVARAVGLSAEEFRRRNFIHEGETTAT
                     SQVIRERVDMGGLLDRALQLSDYHAKRERFAQANGNGKKRGIGFATFMHGAGFTGSGE
                     VYLQSVVSAEATAEGKVRVLSASTEIGQGTNTIFSQIAAEALGLDLDSIEIVQPDTGL
                     VPNSGPTVASRTSMVVGKLVESAVTGLKQTLIGSGLLAEGFTKQDFQNACAEYIARFG
                     PLKTSATYQPPPNVHWDDEKYQGDAYGAYAWAVYVAEVSFDQLTYEAHVEDFVAVQEI
                     GRVLNPVLAAGQIEGGVAQAIGFTLFENVVWKDGRMANNQMTNYIIPTPADIPPIRVF
                     FEENPYA"
BASE COUNT          690 a          901 c          973 g          716 t
ORIGIN      
        1 agagttagag cgtgcggtcg agcagatctg ggaagtcgct cgcgggtttg gtttggatcc
       61 ttacccgacg aattttgaga tcgtgccggc gacagtgatg tacgaagtcg gctcctacgc
      121 gctgcccgga cgttattccc actggacctt cggcaaggcg taccatcgca tgaagacgat
      181 gtacgacttc ggcctctcga agatttacga agtggtcatc aacaccaacc cgtcgtacgg
      241 ctttctgctc gagaccaaca gtccgattca aaacaagatg gtcatcgccc acgtgctggg
      301 ccacgtcgac ttcttcaaaa acaacaccta cttttcgaag accaaccggc ggatggtgga
      361 aagagtttcc acgcacgcgc agcggatgag ggagtatgag tttaagtacg ggcggaaaac
      421 ggtcgaacgt tttctcgact cggtgctggc gatcgaagag cacatcgatc cgtatttctt
      481 catcaagcgc gacgtgtcga ttgccgaaga gaagcggcgc gaggagtatc gccgcaaaga
      541 cggccgctac gacgacttgt ggctgttgga ccagcgcaga gagcagagaa gcgaactgaa
      601 cggcgagggt caaacagagg aaaagaaaaa gccgtcgcaa gaacggctgc cggaaaagga
      661 tctgctgttc tatctcatga agtattcgcc ttcgctcgcg ccgtggcagc gcgacgcgat
      721 cgcgatggtg cacgaagaga tggaatattt cgtgccgcag atgcagacga agatcatgaa
      781 cgagggttgg gccagcatct ggcacgcgcg catcatgcgt gagctcgatc taaccgacaa
      841 cgagcacatc gagtttgcaa acctgcattc cggagtcgta tcgccgcaga agggccaact
      901 gaatccttac tatctcggtt acaagatcta cgaagacatc gagcgccgtt ggaacgagcc
      961 gtcggacgag gagcgcgaga ggtttggccg tcacggcggc gaagggcgcg acaagatttt
     1021 tgaagtgcgc gagctggaga atgacgtttc gtttttgcgc aactatttga ctgaagagtt
     1081 gtgcgaagag ctcgacctgt ttgtgttcga gctggttgag gaagaggaat ggacgatcac
     1141 cgagaagcgt tgggagaagg tgcgcgatca gctcgtctca aacatgacca atttcggttt
     1201 cccttacttg caggtcgagg acggcgatta caatggtaat cgcgagctct acctcaagca
     1261 tcgcttcgaa ggcacggaac tcgacatgcg ctatgcgcgc aaggcgctcg agcatgtgta
     1321 cgtgctttgg ggccgtccgg tacacctcga aacgatcgtc gacgatgaag cgacggtgat
     1381 gcacttcaac ggcaacgagc acgccgaaga ttagcgatcc agtttttcca tcaacatttc
     1441 gggcatgaga ggtatgcggt tgaagctcac gccggtcgcg ttttcgaggg cgttgaggat
     1501 cgcgggcgcc gcgccgtcca tcggcaattc gccgattccc tttgcgccgc ctggtcccta
     1561 cgcgtacggg ttttcttcga agaagacgcg aatcggcgga atgtccgcgg gtgtgggaat
     1621 gatgtagttg gtcatctggt tgttggccat gcggccgtct ttccaaacga cgttctcgaa
     1681 caacgtgaat ccgatcgctt gtgcgacgcc gccttcaatt tgcccggcgg cgagaaccgg
     1741 attcaacacg cgtccgattt cctgcacggc gacgaagtct tcgacgtgag cttcgtaagt
     1801 taattgatcg aatgagacct cggcgacgta gaccgcccag gcgtatgcgc cgtaagcgtc
     1861 gccctggtat ttttcgtcgt cccagtggac gtttggcggc ggttggtagg tcgccgatgt
     1921 tttcagcggc ccgaatcgcg cgatgtattc cgcgcaagca ttctgaaaat cctgtttagt
     1981 aaaaccttct gccagcaacc cgctgccgat cagcgtctgc ttcaaacccg tcactgccga
     2041 ctcaaccagc ttcccaacaa ccatcgacgt gcgcgacgcg acagttggac cactgttcgg
     2101 caccagtcct gtgtcaggct gaacgatttc aatcgaatct aaatccaagc caagtgcttc
     2161 ggccgcgatc tgcgagaaga tcgtgtttgt gccctgaccg atctcggtgc tcgccgagag
     2221 tacgcgaact tttccttccg cggtcgcttc ggcggaaaca acggactgca aatagacttc
     2281 tcccgagccg gtgaatccgg cgccgtgcat gaacgtcgcg aacccgatac cgcgcttttt
     2341 accgttgccg ttcgcttgtg caaagcgctc gcgtttcgcg tggtagtcgc tgagttgcag
     2401 cgcgcgatcg agcaggccgc ccatatcgac tcgctcgcga atcacctggc tcgtcgcggt
     2461 tgtttcgcct tcgtgaatga aattgcgccg gcgaaactct tcggccgaga gtccgactgc
     2521 acgcgcgacc ttatccatgt gacgctcgag cgcgaagatg ctttgcggcg cgccaaagcc
     2581 gcgaaacgcg ccgtgcggcg gcacgtttgt cgcaaccgcg cggctgtgaa tgcggacgtt
     2641 tggacaaaca taaggaccag cggcgtgaat cgtgccgcgc gagagcacga cgggcgacaa
     2701 ggtgcagtac gcgccgccgt cgattacgaa atcgatctcc atcgcgagga gcttgccgtc
     2761 ttttgtgacc gcggttttgt gacgcgtgcg cgacggatgg cgcttggtcg tcgcgaccat
     2821 gtcttcggcg cgatcgtaga tgagtttcac cggtttgccg gatttccacg cgagcagcgc
     2881 ggcgtgtccg gtgattagcg acggatactc ttccttgccg ccgaagccgc cgcctgtctc
     2941 cgtttggatc acgcggatct tgtcttcggg cagatcgaag agcttcacga gagatttgtg
     3001 aacgtagtat gggcactgca tcgatcccca aacggttacg ccttcagtgg gattggcaat
     3061 cgcgatcgcg ccgttgtttt cgatgtagag ttgctcctgc gcgccggtct cgtattcgcc
     3121 ttcgacgatg aaatccgcgg acgtccacga gtcgtccacg ttacctttgt cgacaagaaa
     3181 ctttttgaag acgttgtctt cgccccagat gatggtcttc ttcgcgagcg actcttcgag
     3241 tgtaaagacc gccggctgtt cttcgatctc gataacgacg
//
LOCUS       DASWTX010000610         6003 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_180489, whole genome shotgun sequence.
ACCESSION   DASWTX010000610 DASWTX010000000
VERSION     DASWTX010000610.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6003
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180489"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..940
                     /gene="miaA"
                     /locus_tag="VGD38_09305"
     CDS             <1..940
                     /gene="miaA"
                     /locus_tag="VGD38_09305"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: protein motif:HMM:TIGR00174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEY0728253.1"
                     /translation="SQSPVIAIVGPTASGKSTLGIEVALQLDGEIINCDSVQVYQEIQ
                     VATAKVPLGERKGVPHHLIDFVPPSINYTAVEWAREAAKKIEEIEGRGRIPLLVGGTG
                     FYLRALRNPFFISPQTDESLRLRLNQMREKRGAEHLHRVLRRLDPRAAAQLYPRDWPR
                     VQRAIEVYLQTGRSIVDQKDQRPEAHESSRRLRLLALNPPRAELYERINRRTEEHFDA
                     GLVEEVQELLSRGVPPNSNALGAHGYRRVVEYLEGKRDLPSAVEQTKLDVRHYAKRQL
                     TWFRHEAGVEWFDGFGEEKNVLDAVLAALAAEPRSK"
     gene            1046..1348
                     /gene="hfq"
                     /locus_tag="VGD38_09310"
     CDS             1046..1348
                     /gene="hfq"
                     /locus_tag="VGD38_09310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007563033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006378 - mRNA polyadenylation [Evidence
                     IEA];
                     GO_process: GO:0016070 - RNA metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HEY0728254.1"
                     /translation="MSDGKQAPQNIQDAFLNTVRREKTAVVVYLLNGAKLTGRIRSFD
                     KFSVLLESGAQEQLIFKHAISTISQSRRGSGELHPHAGSEAATREVRADDASSQGA"
     gene            1658..2326
                     /gene="tmk"
                     /locus_tag="VGD38_09315"
     CDS             1658..2326
                     /gene="tmk"
                     /locus_tag="VGD38_09315"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEY0728255.1"
                     /translation="MPGTFITFEGIDGSGKSTQLKLLNSFLRAHGCEAVVTREPGGTT
                     LGLRLREALLDAMEEVDPLTELLVFAADRAQHVRRKLIPALESGAVVISDRYADATVA
                     YQGSGRGFPPELISQIVQLATGGLKPELTLLFDVSIDESTNRTTRRSTGKNAARGARD
                     RLDIENAEFHARVRDAYLALAEAEPQRIKVIDTSGPVDRTHEHVKQIIVPFLRARGHL
                     LNVQ"
     gene            2316..3383
                     /locus_tag="VGD38_09320"
     CDS             2316..3383
                     /locus_tag="VGD38_09320"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF024575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEY0728256.1"
                     /translation="MFSELTGNTRVKDALKRMITSGRLPGALLFAGEEGVGKKRFALE
                     VARTLNCRTPKDGEACGVCPSCVRIAKLNYPEREDADEWTQIIWTNHPDVGLVVAPKR
                     VLRVEQMRQIEKEANFRPFEGKARVFLIDEADKLNDASANALLKVLEEPPRTSHLILI
                     TARPAMLLPTILSRCQMIRFAPLKPAEIESHLVANKLADNKTAKLRARAAGGSIGRAL
                     SNDMVTFTSQRKAMLGVLNALVMTNDRAQLLRSAEQLNEAQYKEEFEERLDVLETLIR
                     DAWMLSLGVKTDLLVNEDLAPELEKISQRMDPSRVSNWILQIEDVRESLLVNVNRKAT
                     TDSLFLTMAGDLPPQKRPKIR"
     gene            complement(3380..4492)
                     /gene="ispG"
                     /locus_tag="VGD38_09325"
                     /gene_synonym="gcpE"
     CDS             complement(3380..4492)
                     /gene="ispG"
                     /locus_tag="VGD38_09325"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019902286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HEY0728257.1"
                     /translation="MRKSRPVQVKHLQIGGGAPVVIQSMTKTDTADVGATVAQIEEMV
                     RAGCEVVRLAVPDNDAAIALKEIRKRVPDVPLVADIHFHYKLALMALEAGIDKLRLNP
                     GNIGAHERIREVVRAAQAQKVPIRIGVNGGSLEKDLLKKYGTATAEAMVESALRHVQI
                     LEDLDFTDIIISLKASDVHRTVAAYRLLAEKVDYPFHLGVTEAGTSFSGTVKSSIGLG
                     ILLHEGIGDTIRVSLAAEPQEEVRVAWEIVKSLGLRTRGVTVVACPTCGRLDVDNFVG
                     IVTEIERRLAHIEEPLHLSIMGCAVNGPGEAHDSQLGITFGRGVGMIFKDGVPMRKVA
                     GENIVDAFVMETEKLLEEISAGKQTANEPELVSITR"
     gene            complement(4506..5891)
                     /gene="rseP"
                     /locus_tag="VGD38_09330"
     CDS             complement(4506..5891)
                     /gene="rseP"
                     /locus_tag="VGD38_09330"
                     /inference="COORDINATES: protein motif:HMM:TIGR00054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HEY0728258.1"
                     /translation="MSYLIVPLAFIFILGSAVVLHEFGHFIVAKLFGIRVETFSVGFG
                     PRLFGKKWGHTDYRVSAIPLGGYVKLGGDESNAPLEGAGAQNIPPSEMYNLRPRWQRI
                     LVALAGPVMNILTALAIPFAGGLMYGVPATPQPVVYFVHRGGAAEKAGLQPGDRIISF
                     NGTENPTWESIYGDGLLSPGHALPVVVNRQGSEVQLTITPTPRTENGETAGFLDFVPD
                     YGGLPVVVGTVQPGSPAEEAGFKEGDKLLKVGDENVKSSFQVTEYIRNHDAQKIPVTI
                     ERNGQTSVVVTSERRLDGRLGLGVVDIFPLHAASIGSAAKYAWDSNLQILRLTGKALA
                     QVFTGKRSVRNTLSGPIGIYQAAQKSVERLGWDGVFGMLGFLSLNLGIFNLLPIPVLD
                     GGAIFLLLIEGMLATVGLSISTAVRDRIQQVGFVMVLLLMVFVITNDVLKTFGGSSEP
                     EKPPAASAPAK"
BASE COUNT         1397 a         1839 c         1634 g         1133 t
ORIGIN      
        1 aagtcaaagt cccgttatcg ccattgtcgg accaacagct tcaggcaaga gtacgctcgg
       61 gattgaagtc gcactccagc tcgacggcga gatcattaat tgcgactccg ttcaggtcta
      121 ccaggagatt caggtcgcaa ccgccaaggt cccactcgga gaacgtaagg gcgtaccgca
      181 tcatctgatc gacttcgtcc cgccttcgat caactacacc gctgttgaat gggcgcgtga
      241 agcggcgaag aagatcgaag agatcgaagg ccgtggacgg attccgctac tcgtcggcgg
      301 caccggtttt tatctacgcg ctctgcgcaa cccgttcttt attagtcctc agacagatga
      361 atcgcttcgt ctccggctga accagatgcg cgaaaaacgc ggcgccgaac acctccatcg
      421 cgtcctgcgc cggctcgacc cacgcgccgc cgcgcaactc tacccgcgcg actggccgcg
      481 tgtgcaacgc gcgatcgaag tctatctgca aaccggacgg tcgatcgtgg accagaaaga
      541 ccagcggcct gaagcgcacg aaagctcgcg gcggctccgc cttctcgccc tgaacccgcc
      601 ccgcgccgag ctctacgaac gcatcaaccg tcgcaccgaa gaacacttcg acgcgggact
      661 agtcgaagag gtccaagagc tactcagccg tggcgttccg cctaattcga acgccctcgg
      721 ggctcacggc tataggcgcg tggtcgagta cctcgagggc aaacgcgacc ttcccagcgc
      781 tgtcgaacag acaaaactcg acgttcgaca ttacgccaaa cgacaattga catggtttcg
      841 ccatgaagcc ggagttgaat ggttcgacgg ttttggtgag gaaaagaacg ttttggacgc
      901 ggttttggcg gcgctcgcgg ctgagccacg gtccaaataa tcatctttct ctcacatctc
      961 gaactaactc ttgtaagtca tggggtcgtg ttgtaatctg attgcaacca acgcgcttta
     1021 acaggatcca taccgggctt caaaaatgtc ggacggcaaa caggcaccgc agaatattca
     1081 ggacgccttt ctcaacactg tacgtcgtga gaagacggca gtggtggtct atctcctgaa
     1141 tggcgccaag ctcacggggc gcatccgcag tttcgacaag ttttcggtcc tgctcgaatc
     1201 cggcgcgcag gaacagctca ttttcaagca cgccatttcg acgatttccc agtcgcggcg
     1261 gggttccggc gaactgcatc cgcacgccgg cagcgaagcc gccacccgcg aagtacgcgc
     1321 cgacgacgca agctcgcagg gcgcgtgaca ttcggctaca tctaggttat gtatgaacga
     1381 accaccgact ccgtcggtgg gattatctgt ttgcagtgtt ggctggtagg ttaggtatgt
     1441 agaaaccacc gactgcgtcg gtgggatact caagagtcag cgaccgaaca cggaagaaga
     1501 ccgaactcgg aagacgaccg aactcgaaga agatcgaact cgaaagaaga ccgagtcgaa
     1561 gagacccgga aggccgaact cggaaccgga gtcggacgac gggactcgga agcgactaag
     1621 aagaccgcct cagaagaagc ccaacccaga gggacttgtg cctggaactt tcattacctt
     1681 cgaaggtatc gacggaagcg gtaaatcgac acaactcaag ctactgaatt cttttttgcg
     1741 agcacacggc tgcgaggctg tcgtgacgcg tgaaccgggt ggaactacgc ttggactgcg
     1801 gctgcgagag gcgctgcttg atgcgatgga ggaggtcgat ccgctgaccg aactgctcgt
     1861 gttcgccgcc gatcgcgcgc aacacgtacg gcgcaagctc ataccggcgc tggaaagcgg
     1921 cgcggtcgtg atctcggatc gctatgcaga cgcgaccgtc gcgtatcaag gctcaggacg
     1981 cggcttccct cccgaactca tttcacaaat cgtgcaactc gcaaccggcg gtttgaaacc
     2041 cgagctgacg ctgctgtttg acgtgtcgat cgatgagtca accaacagaa ctacacgccg
     2101 ctcaaccgga aagaacgcag cacgaggcgc gcgcgatcga ctcgacatcg aaaacgccga
     2161 gtttcacgcg cgcgtgcgcg acgcttacct cgcgctcgcc gaagcagaac cgcagcgcat
     2221 taaagtgatc gacacgagtg gtccagtcga ccggacgcac gagcacgtga aacagataat
     2281 cgtcccgttt ctaagggccc gaggccactt gttgaatgtt cagtgaacta accggcaaca
     2341 cacgcgtcaa agacgcactg aagcgaatga ttacgtccgg ccgtctgccg ggtgcgctgc
     2401 tgtttgccgg cgaagaaggc gtgggcaaga aacgcttcgc gctcgaagtc gcgcgcacgt
     2461 tgaactgccg cacgccaaaa gacggcgaag cctgcggcgt gtgcccgtcg tgcgtgcgga
     2521 tcgcgaagct gaactacccg gaacgcgaag acgccgacga gtggacacag atcatctgga
     2581 ccaatcatcc cgacgtcgga ctcgtcgtcg cacccaagcg cgtgttgcgc gtcgagcaga
     2641 tgcgccagat cgaaaaggaa gcaaactttc gcccgtttga gggcaaggcg cgcgtattcc
     2701 tgatcgacga ggccgacaaa ctcaacgacg cttcagccaa cgcgctctta aaagtcctcg
     2761 aagaaccgcc acgaacgtcg cacctgatcc tgatcaccgc gcgtcccgca atgctgttgc
     2821 cgacgattct ttcacgctgc cagatgattc gtttcgcgcc gctcaagccg gccgaaatcg
     2881 agagtcacct cgtagccaac aaactcgccg acaacaaaac cgcgaaactg cgcgcgcgtg
     2941 cggcaggcgg aagcatcggc cgcgctctct cgaacgacat ggtcacgttc acgtcgcaac
     3001 gcaaagccat gctcggcgtg ctcaacgcgc tcgtgatgac aaacgaccgc gcgcaacttc
     3061 ttcgctcagc cgaacagctc aacgaagcac agtacaaaga agaatttgaa gaacgcctcg
     3121 acgtactcga gacgctcatt cgcgatgcat ggatgctgtc gttgggagtg aaaaccgacc
     3181 tgctggtaaa cgaggatctg gcgccggaac tggagaagat cagccagcga atggatccga
     3241 gccgcgtgtc taactggata cttcagatcg aagacgtgcg tgagagcctg ctggtcaacg
     3301 tcaaccgcaa agcaactacc gactcgttgt ttttgacgat ggcgggcgac ttgccgccac
     3361 agaagcgacc caaaatccgc tagcgagtga tactgacgag ttcgggctcg ttagcagttt
     3421 gctttccggc agagatttct tcgagcagct tttcggtttc catcacaaac gcgtcgacga
     3481 tgttctcacc cgcgactttg cgcatcggca cgccgtcctt gaagatcatt cccacaccgc
     3541 gtccgaacgt gatcccaagc tgcgagtcgt gcgcttcacc cggaccattc accgcacaac
     3601 ccatgatcga aaggtgcaac ggctcttcaa tgtgagcgag ccgccgctcg atctcagtca
     3661 cgatccccac aaagttatcg acatcaagcc gcccgcaagt cggacaggca acaaccgtca
     3721 cgcctctcgt ccgcaaacca agcgacttca caatctccca cgcgacacgc acttcttcct
     3781 gcggctccgc ggccaacgac acacgaatcg tgtcgccgat tccctcgtgc aacagaatcc
     3841 cgagaccaat cgacgacttc accgtgccac taaacgacgt gcccgcttcc gtgacgccga
     3901 ggtgaaacgg ataatcgacc ttctcagcaa gaagccggta agccgccaca gtgcgatgca
     3961 cgtctgacgc ttttaacgag atgatgatgt ccgtaaaatc gagatcctca agaatctgca
     4021 cgtggcgcaa cgccgattca accatcgctt ccgccgtcgc cgtgccgtac ttcttcagca
     4081 gatccttttc cagcgatcca ccattaacac cgatacgaat cggaaccttc tgcgcctgcg
     4141 ccgcacgcac aacctcgcga atgcgttcgt gcgcaccgat gttcccggga ttcagacgca
     4201 gcttatcgat gccggcttcc agcgccatca acgcgagctt gtaatggaag tgaatatcgg
     4261 cgacgagagg aacgtcggga acgcgcttgc gaatctcttt cagcgcaatc gccgcatcgt
     4321 tatcgggaac ggcaagccgg acgacctcgc atccagcacg caccatctcc tcgatctgcg
     4381 ccacagtcgc gccgacgtca gcggtgtccg tcttagtcat cgactgaatg actactggcg
     4441 cgccgccacc gatttgaaga tgcttaacct gaactggtcg tgatttgcgc atgcgccggt
     4501 cttatctatt ttgccggcgc gctcgcagcg ggcggttttt ccggttcgct gctaccgccg
     4561 aaagtcttca gcacgtcgtt ggtgatcaca aaaaccatca acagcaacac catgacgaaa
     4621 ccaacctgct gaatacggtc gcgcacggcc gtcgagatcg ataacccaac cgtcgccagc
     4681 atcccttcga tcagcaagag gaagatcgcg ccaccgtcga gcaccggtat cggcagcaag
     4741 ttgaagatgc cgaggttcaa actcaaaaag cccaacatcc cgaatacgcc gtcccagccg
     4801 agacgttcga ccgatttttg cgccgcctgg tagattccga tcgggcctga gagcgtgtta
     4861 cgcaccgaac gtttgccggt gaaaacctgg gccaacgctt tacccgtcaa tcgcagaatc
     4921 tgcaggtttg aatcccacgc gtacttcgcc gccgatccga tgctggctgc gtgaagtgga
     4981 aatatgtcta cgacacccaa acccaatctg ccgtccaagc ggcgttcgga cgtgacaacg
     5041 acggacgttt gcccgttgcg ctcgatcgtt accgggatct tttgcgcgtc gtgattcctg
     5101 atgtactcgg taacctgaaa cgagctcttg acgttctcat cgccgacttt cagcagttta
     5161 tcgccctctt tgaaacccgc ttcttccgcg ggcgaaccgg gctgcactgt gccgacaacc
     5221 acaggtaaac cgccgtagtc cggaacgaaa tcaagaaaac ccgcggtctc gccgttttca
     5281 gtgcgcggcg tcggagtaat cgtcagttga acttcagaac cctgtcgatt cacaacgacg
     5341 ggaagcgcgt ggcccggcga gagcagtcca tcgccgtaga tcgattccca agtcggattc
     5401 tcagtgccgt tgaacgaaat gattctgtcg cccggttgta gtccggcttt ttccgcggcg
     5461 cctccgcggt gaacgaagta aaccaccggt tgcggcgtcg ccggtacgcc gtacatcaaa
     5521 ccgccggcaa acgggatcgc gagcgcggtc agaatgttca tcaccggccc cgcgagcgca
     5581 accaggatgc gctgccaacg cggccgcagg ttgtacattt cgctgggcgg aatgttttgg
     5641 gcgcctgcgc cttcgagcgg agcattggat tcgtcaccgc cgagctttac gtaaccgccg
     5701 agcggaatcg ccgaaacgcg gtaatcagtg tgtccccact tcttgccgaa caggcgcggt
     5761 ccgaaaccaa ccgagaaagt ctcgactcga ataccaaaca gcttggcgac gatgaagtgg
     5821 ccgaattcgt gaagaacaac cgcggatccg aggatgaaaa tgaaagccag cggtacgatt
     5881 aagtaactca ttcagtgcct tttcttaaga aatactgccc caattaaccc ctcgttagag
     5941 tccgacttct cggagccggt tgcacaggca gtttacagga ttcaaccgcg gattgcacag
     6001 ata
//
LOCUS       DASWTX010000611         2214 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_292587, whole genome shotgun sequence.
ACCESSION   DASWTX010000611 DASWTX010000000
VERSION     DASWTX010000611.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2214
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292587"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(17..271)
                     /locus_tag="VGD38_09335"
     CDS             complement(17..271)
                     /locus_tag="VGD38_09335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728259.1"
                     /translation="MTLDHDLVAALEEDYNSAPITEQEKVMLDYVVQITRDATRISPA
                     DHERLRSVGFDDKGILQITLIAAWFNYINRVADALGVGRG"
     gene            complement(302..583)
                     /locus_tag="VGD38_09340"
     CDS             complement(302..583)
                     /locus_tag="VGD38_09340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728260.1"
                     /translation="MTWIKTVAVTEDDEVRKAVESQRALYPIEYATPVHPTADGETAG
                     IVASHSLIPQALFHAFATFGSLMSSDLPLTRRQHEMITTVVSVTNRCHY"
     gene            complement(570..1922)
                     /locus_tag="VGD38_09345"
     CDS             complement(570..1922)
                     /locus_tag="VGD38_09345"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEY0728261.1"
                     /translation="MSVAQLKRQIGLRTAAALVVGEVIAVGIFLTPAGMAKQLGSPLW
                     LLVVWFAMGAMALCGALCYGELAARYPEAGGGYVYLREAYGPALAFMYGWMAFLVMDP
                     GLTAALAVGLATYAGYIVELTPWGQKLLAIGAIIAIALINIRGVRLGAWFVRAMMFLK
                     LGLLAFVILWGLGFQLGDWSNFTPFVARHPNSPPLIGALAGGLVGAFFSFAGWWDLGK
                     LAGEVKDPARTLPKALALGVLVIMIVYILTSLTFVYLVPLEQVTSGETFAAQAGEVLF
                     GRAGGTIFSSIVVIAVLGSLAAVVMSAPRVYFAMARDGLFIPAVAAIHPRFETPAVAI
                     ALQALLASVLVLVGTFNDIISYFIFVVIVFIALTIIALFKLRRRRSEDVGYLTPGYPV
                     TPIVFLALIVVLLVLLGGNNPKQAFLGVAVVSLGLPFYLLVFRRKRFVEKGRTSYDLD
                     "
BASE COUNT          509 a          674 c          642 g          389 t
ORIGIN      
        1 acgaacttca tattgcctac cctctgccga caccaagtgc gtcagccaca cgattgatgt
       61 agttgaacca tgccgcgatc aacgtgatct ggaggatgcc cttgtcatcg aaaccaaccg
      121 aacgtaaacg ctcgtgatcc gcgggtgaaa tgcgtgtcgc gtcgcgtgtg atctgcacga
      181 cgtaatcgag catgactttt tcctgctccg ttatcggtgc tgaattgtag tcctcttcca
      241 gcgccgctac caaatcatga tccagtgtca ctcgacgcag aaactctgcg tgcgattcga
      301 ttcaataatg acaccggttc gtcaccgaga cgaccgtcgt gatcatctcg tgctggcgcc
      361 gcgtcaacgg caggtcggaa gacatcaacg agccgaaggt tgcgaaggcg tgaaagagtg
      421 cctgcggtat caaactgtgt gacgcgacga tgccggcggt ctcgccgtcg gccgtcgggt
      481 gcacgggtgt cgcgtattcg atcggataga gcgcgcgttg cgattcgacc gccttgcgca
      541 cctcgtcgtc ttccgtgacc gcgacagtct taatccaggt cataacttgt tcttcctttt
      601 tccacgaaac gtttacgacg aaacaccaac aggtaaaacg gcaggcccag cgaaactacc
      661 gcgacgccga gaaaagcctg cttcggattg tttccgccga gcaacaccag cagcaccaca
      721 atcaacgcga gaaagacgat cggtgtcacc ggataacccg gcgttaaata accgacgtct
      781 tctgagcggc gccggcggag cttgaacagc gcgatgattg taagcgcgat gaacactatc
      841 actacaaata taaagtagga aatgatgtcg ttgaacgtac cgaccaggac cagcaccgac
      901 gcgagcaacg cttgcagcgc aatcgccacc gcgggcgtct cgaagcgtgg gtgaatggca
      961 gccacggccg gaataaacaa gccgtcgcgc gccatcgcaa aatagactcg cggcgctgac
     1021 atcactaccg cggccagact tcctaacacg gcgatgacca cgatcgacga gaagatcgtt
     1081 ccgccggcgc gtccgaataa aacctcgcct gcctgtgctg cgaatgtttc gcctgaagtg
     1141 acctgttcga gcgggacgag atagacgaaa gtcaggctcg tcagaatgta gacgatcatg
     1201 atgacgagca cgccgagcgc gagtgctttt ggcagagtgc gggctgggtc ttttacttcg
     1261 cctgcgagct tgcccaaatc ccaccagccc gcgaacgaga agaacgctcc gaccagtccg
     1321 ccggcgagag cgccgatgag cggtggcgag tttggatgac gcgcgacaaa gggcgtgaag
     1381 ttggaccagt cgccgagttg gaagccgagg ccccagagaa tgacgaacgc gagtaaaccg
     1441 agtttgagaa acatcatcgc gcggacgaac cacgcgccga ggcgcacacc gcgaatgttg
     1501 atgagcgcga ttgcgatgat ggcgccgata gcgagtagtt tttggcccca aggtgttaac
     1561 tcgacgatgt agccggcgta ggtcgcgagg ccaacggcga gtgccgcagt caaaccggga
     1621 tccatgacga gaaacgccat ccagccgtac atgaaagcga gcgctggtcc atacgcctcg
     1681 cgcaggtaga cgtaaccgcc gcccgcttcg ggataacgag cggcgagttc gccgtaacag
     1741 agtgcgccgc acagcgccat cgcgcccatc gcaaaccaca cgacgagcag ccacagcggc
     1801 gacccgagtt gtttggccat cccggcgggc gtcaaaaaaa ttcccaccgc gatcacctca
     1861 cccaccacga gcgccgccgc cgtgcgcaat ccgatctgtc gtttcagctg agccacactc
     1921 attacagcca cggatcttgc gacggctctg ccgcgatctt gcgacggctc tgccgccgga
     1981 tgtgaggcga ggctacgcct cgccagcggc taaggcagta gaagatgggc taggcccctg
     2041 gtacggcctt cggcctatta gggctgagcc cgaaccaggg gcatagcccg actttctata
     2101 ctctactgta cggcaaggca gagccttgcc tcacatccgg cggcgtagcc gctccgacag
     2161 cgcggcgcaa ccgctccgaa cagcaccgcg tagctgctcc gaacatcggc ggcg
//
LOCUS       DASWTX010000612         5682 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_314039, whole genome shotgun sequence.
ACCESSION   DASWTX010000612 DASWTX010000000
VERSION     DASWTX010000612.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5682)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5682
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314039"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..332)
                     /locus_tag="VGD38_09350"
     CDS             complement(<1..332)
                     /locus_tag="VGD38_09350"
                     /inference="COORDINATES: protein motif:HMM:NF014669.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HEY0728262.1"
                     /translation="MNTYAKADTLMGAALAPLDWTRSVGLVIVFSLFIAAAAQFSIQV
                     GPIPITGQSFAVLLTGALLGSRLGAAAVIAYLIEGAIGLPFFAPGGAPGIARFFGPTG
                     GYLIAFPAA"
     gene            complement(351..2870)
                     /locus_tag="VGD38_09355"
     CDS             complement(351..2870)
                     /locus_tag="VGD38_09355"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF001950.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-translocating pyrophosphatase"
                     /protein_id="HEY0728263.1"
                     /translation="MELSLLLRRAAIASAATVSTLAFALPAYAQQHGGEANLQLPDLT
                     QVNFLNDSISGHNLLLTGIVICVLGLGFGLVIYMQLQKMPVHRAMREISELIYATCKT
                     YLTTQGKFILILEAFIAVVIVLYFGVLSGMEPFRVFIILLFSLIGIAGSYGVAWFGIR
                     VNTFANSRTAFASLEGKPFPIYAIPLKAGMSIGMMLISVELLIMLCILLFIPGSYAGP
                     CFIGFAIGESLGAAALRIAGGIFTKIADIGSDLMKIVFKIKEDDARNPGVIADCTGDN
                     AGDSVGPSADGFETYGVTGVALITFILLGVTNPTVQVQLLVWIFIMRVMMIIASAVSY
                     FINDAIAKARYRNADTMNFEAPLTSLVWITSIVSVVITFVVSYLTIPTLSGNPTLWWK
                     LAIIISCGTLAGAIIPELVKVFTSTESRHVSEVVTSSREGGPSLNILSGLVAGNFSGY
                     WLGISIVALMAIAYFFTNLGADAGFGLGALMVDPVAAPVFGFGLVAFGFLGMGPVTIA
                     VDSYGPVTDNAQSVYELSLIEQEPDVNDEVRKAFNTDVNFTRAKHLLEENDGAGNTFK
                     ATAKPVLIGTAVVGATTMIFSIIMALTEGLRTNVESLSLLHAPFVLGLITGGAVIYWF
                     TGASIQAVTTGAYRAVEFIKANIRLEGVEKASVEDSKKVVQICTQYAQKGMFNIFLTV
                     FFSTLAFAFVEPFFFIGYLISIAVFGLYQAIFMANAGGAWDNAKKVVEVDLKMKGTPL
                     HDATVVGDTVGDPFKDTSSVALNPVIKFTTLFGLLAVELAVSLTNRNNGDATVTHIFA
                     LLFFLVSVYFIWRSFHKMRIGTMALEPTPAEREVVKTAAGD"
     gene            complement(2935..4803)
                     /locus_tag="VGD38_09360"
     CDS             complement(2935..4803)
                     /locus_tag="VGD38_09360"
                     /inference="COORDINATES: protein motif:HMM:NF014598.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009267 - cellular response to starvation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation CstA family protein"
                     /protein_id="HEY0728264.1"
                     /translation="MNALPIIIGALCVIAISYRYYSAFIAAKVLALDDSRPVPSQTMY
                     DGHNYYPTNKWVLFGHHFAAISGAGPLIGPVLAAQFGFLPGLLWLVIGVCLGGAVHDF
                     MIMAGSVRRKGKSLAEMARTEISPLSGLVAGIAILFIVVIALAGLGLVVVNALAESPW
                     GTFTVGFTIPLALLMGLYMYRFRKGKIAEASIIGIVGLLFAVYLGGKIAESSFAETFT
                     LSRNSLIVIMAAYGFIASVLPVWMLLCPRDYLSSYLKIGTIAFLIIGVIVVAPNLNMP
                     AFTPFTAGGGPVISGKLYPFVFITIACGAISGFHALISSGTTPKMIAKETDTRMIGYG
                     SMLMEGVVGIVALIAAASLFPGDYFAINTAQGTEAQKAAYVRMIDTHSSESFNLQPQE
                     IDRLEEESGEKNLRGRTGGAVTLAIGIAKIFEGIPGLGGFMKYWYHFAIMFEALFILT
                     TIDTGTRVARFLVGEFGGRFYRKLEEPNWLPGSIITSLLVVSAWAAFIWSGSISTIWP
                     MFGIANQLLAAVALCVATTILINMGKGKYAWVTLVPLSFVSTTTLVAGFKSITDIFWP
                     LAQKPETSTQGMINTSLTAIIMVAAVVIMIDSIRRWLGRPREPQMSRLDSFAVNRQ"
     gene            complement(4804..5124)
                     /locus_tag="VGD38_09365"
     CDS             complement(4804..5124)
                     /locus_tag="VGD38_09365"
                     /inference="COORDINATES: protein motif:HMM:NF016876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008657 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) inhibitor activity
                     [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA];
                     GO_process: GO:0030541 - plasmid partitioning [Evidence
                     IEA];
                     GO_process: GO:0051290 - protein heterotetramerization
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEY0728265.1"
                     /translation="MIKVAFHPDAEAELENARTWYRERNQIAGRAFVGEVLSALRSIA
                     EAPEAWPRTRANERRFVFKRFPYSIIYRLRENEVFVTAIAHQGGVQITGAAVGDGGRL
                     IQLH"
     gene            complement(5121..5381)
                     /locus_tag="VGD38_09370"
     CDS             complement(5121..5381)
                     /locus_tag="VGD38_09370"
                     /inference="COORDINATES: protein motif:HMM:TIGR02574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module protein"
                     /protein_id="HEY0728266.1"
                     /translation="MSFFVESEAMATELTQVFNDALQLSDSERATLVGLLLESLETTE
                     SADADVEAAWAAEAERRWQEIESGAVETIPWDEVKAKLLRGE"
     gene            complement(5402..>5682)
                     /locus_tag="VGD38_09375"
     CDS             complement(5402..>5682)
                     /locus_tag="VGD38_09375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728267.1"
                     /translation="YGYTRSGVGQKMGRPTRTPVALKFAAICFVLVAIGLFVIPHDVA
                     PRELFSEAFDSSAEKHKQTLYGLLIIIAGLIGAAIGIKLGSSRNEAPE"
BASE COUNT         1339 a         1714 c         1561 g         1068 t
ORIGIN      
        1 gccgccggaa acgcaatcaa gtaaccaccg gtcggtccaa aaaaccgagc gatgcccggc
       61 gcaccacccg gcgcgaaaaa cggcaacccg atcgcgccct cgatcaaata cgcaatcacc
      121 gccgccgcgc ccagccgcga gcccaacaga gcgcccgtca aaagcaccgc aaacgactgt
      181 cccgtgatcg ggattggtcc aacctgaatc gaaaactgcg ccgccgcggc aatgaacaaa
      241 ctaaaaacaa tcaccagccc gacggaacgc gtccaatcga ggggcgccag cgcggcgccc
      301 atcaacgtgt cagctttggc gtaagtattc ataagcttgc ttcttgttaa ttagtctcct
      361 gccgcggtct tcacaacctc acgctcagcg ggcgttggct cgagagccat cgtgccgatg
      421 cgcatcttgt ggaacgagcg ccagatgaag taaaccgaaa ccaggaagaa cagcagcgcg
      481 aaaatgtgcg tcaccgtcgc gtcgccgttg ttccggttgg tcaaactaac cgcgagctcg
      541 accgccagca atccaaacag cgtcgtgaac ttgatcacgg gattcaacgc caccgacgaa
      601 gtgtctttga acggatcgcc gaccgtgtcg ccgacgactg tcgcatcgtg caacggcgtg
      661 cccttcatct tcagatcgac ttcgacgact ttcttcgcgt tgtcccacgc gccgccggcg
      721 ttggccatga agatcgcctg gtacaaacca aacaccgcga tcgagattag gtaaccgata
      781 aagaagaacg gttcgacaaa cgcaaacgcc agcgtcgaga agaacaccgt caggaagata
      841 ttgaacatgc ccttctgcgc gtactgcgtg cagatctgga ccaccttctt actgtcttcc
      901 accgacgctt tttcaacgcc ttcgagccgg atgtttgcct tgatgaactc aaccgcgcga
      961 tacgcgccgg tcgtcaccgc ctgtattgac gcgccggtga accagtagat cacagcgccg
     1021 ccggtgatca ggccaagcac aaagggcgcg tgcagcagcg acaagctttc aacgttggtg
     1081 cgcaagcctt cggtcagcgc catgatgatc gagaagatca tcgtggtcgc accgacgacg
     1141 gccgttccga tcagcaccgg tttcgcggtt gctttgaacg tgttaccggc gccgtcgttc
     1201 tcttcgagca ggtgcttcgc gcgcgtgaag ttcacgtccg tgttgaacgc cttccgcact
     1261 tcgtcgttga cgtcgggctc ctgttcgatc agcgacagct cgtaaaccga ttgcgcgttg
     1321 tcagtcaccg gaccataaga gtcgacggcg atcgttaccg gacccatacc gaggaagccg
     1381 aacgccacaa gtccgaaacc aaacaccggc gcagcgacgg gatcgaccat caacgcgcca
     1441 agcccgaacc cggcatcagc gccgagattc gtgaagaaat aagcaatcgc catcagcgcc
     1501 acgatgctga tgcccagcca gtaaccggag aagtttccgg cgacgagtcc ggaaagaatg
     1561 ttcagtgacg ggccgccttc acgtgacgac gtcacaacct cgctgacgtg ccgcgattcg
     1621 gtcgaggtaa acaccttcac caactcggga atgatcgcgc ccgcgagcgt gccgcaggag
     1681 atgatgatcg cgagtttcca ccagagcgtc gggttgccgc tcaacgtcgg aatcgtcagg
     1741 tacgaaacga cgaaagtgat cacgaccgaa acgatcgaag tgatccacac cagcgacgtc
     1801 agcggcgctt cgaaattcat cgtatcggcg tttctgtaac gagccttggc aatcgcgtcg
     1861 ttgatgaaat aagaaaccgc actggcgatg atcatcatga cgcgcatgat gaagatccag
     1921 accagcaact gcacctgcac agtcgggttc gtaacgccca gcaaaataaa cgtgatcagc
     1981 gccacgcccg tgacgccgta agtttcaaaa ccgtccgcgc ttggtccaac cgagtcgccc
     2041 gcgttgtcgc ccgtgcagtc ggcaatcacg cccgggttac gcgcatcgtc ttccttgatc
     2101 ttgaagacga tcttcatcag gtcggaaccg atgtcggcga tcttcgtgaa gatgccgccg
     2161 gcgatacgca acgccgccgc gcccagcgat tcaccgatcg cgaaaccgat gaaacacgga
     2221 cccgcgtaac tgcccgggat gaacaacaaa atgcacagca tgatcagcaa ctcgacgctg
     2281 atcagcatca tgccgatgct catgcccgcc ttcagcggaa tcgcgtaaat cggaaacggt
     2341 ttgccttcga gactggcgaa cgccgtgcgc gagttggcga acgtgttgac gcgaatgcca
     2401 aaccacgcga cgccgtaact gcccgcgata ccaatcaaac tgaacaacag aatgatgaat
     2461 acgcggaacg gctccatgcc cgacaacacg ccgaagtaaa gaacgatcac gactgcgatg
     2521 aacgcttcga ggatcagaat gaacttgccc tgcgtcgtga gatacgtctt acacgtggcg
     2581 tagatcagtt ccgagatctc gcgcatggca cggtgcaccg gcatcttttg cagttgcatg
     2641 tagatgacga gaccgaagcc gaggccgagc acgcagataa caatgcccgt caacagcaaa
     2701 ttgtggccgc tgatggagtc gttgaggaag ttcacctgcg tcaggtcggg aagttggaga
     2761 ttcgcttcac cgccgtgctg ctgcgcgtag gccggcagcg caaaggccag agttgaaacg
     2821 gtggcagcac tagcgattgc ggcacgccgc agtaataggg atagttccac ttcggagaaa
     2881 ttcctttcca gtttgtctag attatggcga gaaacgcttt tacgaaagcg ggtattattg
     2941 ccgattcacc gcaaaactgt ccaatcgaga catttgtggt tccctgggtc tgccgagcca
     3001 gcgccggatg gagtcgatca tgatgacgac ggcggcaacc atgatgatgg ccgtcaggct
     3061 cgtgttgatc atcccctgag ttgaggtttc gggtttttgc gccagcggcc agaagatgtc
     3121 ggtgatggat ttgaaccccg ccacgagggt cgtcgtgctt acaaaactaa gcggaaccag
     3181 ggtgacccac gcatatttcc ctttgcccat gttgatgaga atggtcgtgg cgacacacag
     3241 agcaaccgcg gccagaagct gattagcaat gccaaacatt ggccaaatcg tggaaatcga
     3301 gcccgaccag atgaacgccg cccacgccga gacgaccagt aaagaagtga ttatcgatcc
     3361 cggtaaccaa ttcggctcct cgagcttccg gtaaaatctg cccccgaatt caccgaccag
     3421 aaaacgcgcg acccgcgtgc cggtgtcgat cgtcgtcagg ataaacagcg cttcaaacat
     3481 gatcgcgaag tggtaccagt acttcataaa accgccgaga ccgggaatcc cctcgaagat
     3541 cttcgcgatg ccgatcgcga gtgtgaccgc gccgccggtg cggccgcgca ggtttttctc
     3601 accggattcc tcttcgagac gatcgatctc ctgcggttgc aggttgaagc tctcgctcga
     3661 atgcgtgtcg atcatgcgta cgtacgcggc tttctgtgct tcagtgccct gtgcggtgtt
     3721 gatggcgaag tagtcgcccg ggaagagcga cgccgcggcg ataagcgcga cgatgccgac
     3781 aacgccttcc atcaacatgc tgccgtagcc gatcatgcgc gtgtccgtct ctttcgcgat
     3841 catcttcggc gtcgtgccgg acgagatcag cgcgtggaaa ccggaaatcg cgccgcatgc
     3901 gatcgtgatg aaaacaaacg gatagagctt gcccgagatg accggtccac caccggccgt
     3961 gaacggcgtg aacgccggca tgttcaggtt cggcgcgacg acgatcacgc cgatgatcag
     4021 gaacgcgatc gtgccgattt ttaagtacga cgacaggtag tcgcgcgggc aaagcagcat
     4081 ccagaccggc agcaccgagg cgataaaacc gtacgccgcc atgatcacga tcaaactgtt
     4141 gcgcgagagc gtgaacgttt ccgcgaaaga agactcggca atcttcccgc cgagataaac
     4201 cgcaaacaga agcccgacga ttccgatgat gctcgcttcc gcgatctttc ctttgcggaa
     4261 gcgatacatg taaagaccca tcaacaacgc gagcgggatc gtgaagccaa cggtgaacgt
     4321 tccccacggc gactcagcca acgcattcac gacgaccaac ccgagtcccg caagcgcgat
     4381 gacgacgata aacaggatcg cgatgccggc gacgagtccc gacagcggac tgatctccgt
     4441 gcgcgccatt tccgccagcg atttgccttt ccggcgaacg ctgccggcca tgatcatgaa
     4501 atcgtgcacc gcgccgccga gacacacgcc gatcaccagc cacaacaacc ccggcaaaaa
     4561 cccgaactgc gccgccagca cgggcccaat caacggtccc gcgcccgaaa tcgcggcgaa
     4621 gtgatgccca aacagcaccc acttgttcgt cggataatag ttgtgcccgt cgtacatcgt
     4681 ctgcgacggc accgggcgcg aatcatccag cgcgagcacc ttcgcggcga tgaacgcgga
     4741 gtagtagcga tacgaaatcg cgattacgca aagcgcgccg atgattatgg gcagtgcgtt
     4801 cattcagtgg agttgtatga gtcgtccgcc gtcacctacg gccgcgccag taatctggac
     4861 gccgccttgg tgagcaattg ccgttacaaa cacttcgttt tcgcgaagac ggtagataat
     4921 ggagtatgga aaccgcttga agacaaaacg ccgttcattt gctcgagttc ttggccacgc
     4981 ttccggagct tctgcaatgc ttctcagcgc actgagaact tccccgacaa aagcccgccc
     5041 cgcaatttga ttacgctcac gataccaagt gcgagcattc tcaagttccg cttccgcgtc
     5101 gggatggaag gcaactttga tcattcccct cggagaagct tcgctttcac ttcatcccag
     5161 ggaatagtct cgacggcgcc agactcgatt tcttgccagc gcctttcggc ttcagcggcc
     5221 catgcagctt ccacgtcagc gtcggcgctt tcggtagttt caagactctc caaaagtaaa
     5281 ccgaccagcg tcgcccgctc actgtccgaa agttgcaggg cgtcgttgaa gacttgagtt
     5341 agttccgtag ccatggcttc tgattctacg aaaaacgaca ttcaatttcg agtggaagat
     5401 cctactccgg tgcttcgttc cttgaactgc cgagcttgat gccgatcgcg gcgccgatca
     5461 ggccggcgat gattatcagt aggccgtaga gcgtctgttt gtgcttctcg gctgacgagt
     5521 caaatgcttc ggagaagagc tcgcgcgggg cgacgtcgtg tggaatcacg aacagaccga
     5581 tcgcgaccag cacaaaacag atcgccgcaa acttaagagc caccggcgtg cgcgtggggc
     5641 gccccatctt ctgtccaacg ccgctgcgtg tgtagccgta ag
//
LOCUS       DASWTX010000613         2144 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_53019, whole genome shotgun sequence.
ACCESSION   DASWTX010000613 DASWTX010000000
VERSION     DASWTX010000613.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53019"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(76..>2144)
                     /locus_tag="VGD38_09380"
     CDS             complement(76..>2144)
                     /locus_tag="VGD38_09380"
                     /inference="COORDINATES: protein motif:HMM:NF024117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEY0728268.1"
                     /translation="QDTDIADNVENAEIVKLEDRGVEKKRRPSRDVHPAMLAWTALVV
                     RRFAELLYAVPREGKLTDLRAELMRLLDRFGFRDQISEPARHSTDEDQLPQVMLNFNS
                     LEALRRAFVAAMKSIEIGGNGITTARLSTFLQEVRRSLGSQSQLFGTRDRNGLSVLEA
                     TDVRGLRFRAVFIAGLTEGGFPLTAGRDWIYPHEERDRLREYGLTLEDISPNTLLKEE
                     HYFYQCACRATERLYLTRPLMLEDDTETVASYYVDELRRAIAPYKVETEIIRRDYEGK
                     HLDTASSTNEMKIGLVRQQERHLHRGQREALLPQPRIKRLLTLARNDGFLSDAALRRI
                     EIERERCGPHYGPYDGIITNPDLLRLLKLKFGPDFIHSASGLSTYGNCPYRFFAQRVL
                     RLEPRGEAALDLQAIDAGKLLHDILRRFFERHRREPLHKLDRKKLQTELASIADKVFD
                     EHERVVPPLNKQIWKIDREIRKILLDQVLLYELEVQEAAAKEQVLPAYFEVAFGGMKS
                     AAKDPDSKDAPLELARETFVGEETIKISGQIDRVDVARDDTVVAYDYKLSTGSSRWDI
                     VSGRSLQLPIYLEALEKLILPDQPIAGGGYYIIRGAQDRRNKGLYRASQLDYLQLRAR
                     NSIFSDDDWQQIRAQVDARIWEFLDGMRAGRFIVDPSERQKTCRFCDYGAVCRYDRDR
                     IDRKKK"
BASE COUNT          404 a          612 c          669 g          459 t
ORIGIN      
        1 tgccgcctgt tcgggtaata ggacgcgtgg tgcttccatt tgaattagcc gcggattaca
       61 cggatttccg cgaaatcatt ttttctttcg atcgatgcga tcgcgatcgt aacgacacac
      121 cgcgccgtag tcgcagaagc gacaggtctt ttggcgctcg gacggatcga cgatgaagcg
      181 tccggcgcgc atgccgtcga gaaactccca gatgcgcgcg tcgacctgcg cgcggatctg
      241 ttgccagtcg tcgtcggaaa agatcgagtt ccgcgcgcgc agttgcagat agtccaactg
      301 gctcgcgcga tacaaacctt tgttgcgacg gtcctgcgcg ccgcgaatga tgtaatagcc
      361 gccgcccgcg atcggctggt cgggcaagat cagtttttcg agtgcttcga gatagatcgg
      421 cagttgcaga ctgcggcctg aaacgatgtc ccaacgactc gatccggtcg acaacttgta
      481 gtcgtaagcg acgacggtgt cgtcgcgcgc gacgtcgacg cgatcgatct ggccgctgat
      541 cttgatcgtc tcttcgccga caaacgtctc acgcgcgagc tcgagcggcg cgtccttcga
      601 atcgggatct ttcgccgccg atttcatgcc gccaaacgcg acttcaaaat acgcgggcag
      661 cacctgttcc ttcgcggcgg cttcctgaac ttccaactcg tacaacaaca cctggtccaa
      721 cagaatcttg cgaatctcgc gatcgatctt ccagatctgt ttgttgagcg gcggcactac
      781 gcgttcgtgc tcgtcaaaca ctttgtcggc aatagacgct agctcggtct gaagtttctt
      841 gcgatcgagt ttgtgcagcg gttcgcggcg atgacgttcg aagaaacggc gcaggatgtc
      901 gtgcagcagt ttgccggcgt cgatggcttg aagatcgagt gccgcttcgc cgcgcggttc
      961 gagccgcagg acgcgttgtg cgaagaagcg gtacgggcag ttgccatacg tgctgagccc
     1021 gctcgcgcta tgaatgaagt caggaccgaa ttttagtttc agcaacctga gcagatcggg
     1081 attcgtgatg atgccgtcgt atggaccata gtgcgggccg caacgctcgc gctcgatctc
     1141 gatgcgacgc aatgcggcat cgctgagaaa accgtcgtta cgcgcgagcg tcaacaaacg
     1201 cttgatgcgc ggctgcggca gcagagcttc acgctgaccg cgatgcaggt gacgctcctg
     1261 ctggcgcacc aggccgatct tcatttcgtt ggtagacgac gcggtgtcga gatgcttgcc
     1321 ttcgtaatcg cggcggatga tctcggtctc gaccttgtac ggcgcgatcg cgcggcgcag
     1381 ttcgtcgacg taatacgagg cgacggtttc ggtgtcgtct tcgagcatca gcggacgcgt
     1441 gagatagaga cgctcggtcg cgcgacacgc gcactggtag aagtagtgct cttctttcag
     1501 cagtgtgttt ggcgagatgt cttcgagtgt caggccgtat tcgcgcaggc ggtcgcgttc
     1561 ttcgtgcgga tagatccaat cgcgcccggc ggttaacggg aatccgcctt cagttagtcc
     1621 cgcgataaac acggcgcgga agcgcaggcc acgcacgtcc gtggcttcga gcacgctcag
     1681 accgttgcga tcgcgcgtgc cgaagagttg cgactgcgaa ccgagcgagc ggcggacttc
     1741 ctgtagaaac gtcgaaagcc gcgcggtggt gatgccgttg ccgccgatct cgatgctctt
     1801 catcgcagcg acaaaggcgc ggcgtagcgc ttcgagcgag ttgaagttga gcatcacttg
     1861 cggcagttga tcttcatcgg tcgagtggcg cgcgggttcg gagatctggt cgcgaaaacc
     1921 aaaacgatcc aatagtcgca tcagctccgc gcgcagatcg gtgagcttgc cttcgcgcgg
     1981 cacggcgtaa agcagttcgg cgaaacggcg cacgacgaga gcggtccacg cgagcatcgc
     2041 cggatgaacg tcgcgcgacg ggcgtcgttt cttttcgacg ccgcgatctt caagcttcac
     2101 gatctcggcg ttctcgacgt tgtcggcgat gtcggtgtcc tgat
//
LOCUS       DASWTX010000614         3798 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_358583, whole genome shotgun sequence.
ACCESSION   DASWTX010000614 DASWTX010000000
VERSION     DASWTX010000614.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3798
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_358583"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..733)
                     /locus_tag="VGD38_09385"
     CDS             complement(<1..733)
                     /locus_tag="VGD38_09385"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase transmembrane
                     domain-containing protein"
                     /protein_id="HEY0728269.1"
                     /translation="MIESREEFAENWPDTDTEELSEEAETSAANTSRRSFVWLQAFAF
                     LLGLGLLIFVINRVGVQPLFDALLRIGFGFFVIVALSGLRHFLRTIAMRAAVPPEHRR
                     ISFRHAFAARLGGEAISFLTFTGPLLGEATKVALLRKRVPLTYGVTALVVDNLLYNLS
                     VVFFVLTGAVVMLWWYPLPEEVNFVLVGIALIATLGIVAVAIAAKRRVMLMTWIIDRL
                     AQLRLSPKVILKRRDHIYHIESKVYD"
     gene            complement(730..3249)
                     /locus_tag="VGD38_09390"
     CDS             complement(730..3249)
                     /locus_tag="VGD38_09390"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEY0728270.1"
                     /translation="MDSRAGSYLRKLWLLLVVALVCCASQATALANTKRLVVIKCDGL
                     PYDLVDRLVKQRDNDTGKSTLPWMDHIFYQRGSRLSSFYVRGMSLSAPSWSLIETGQH
                     LQIKGNVEFDRYTLHSYDYLNFFPLYVAGVVGARIDMRGVEVLDSLGLPMLADAYGHD
                     ERYLTFSLYGRGIRYSTLQGSLQGRFTKSPKELFDEWTMGFELRSALRDQLVRELIGK
                     LNNPKIRYLDLFLADFDHIAHHNNDKQSQVFVLKQMDAIIGQVWTAIQQSPMADDTAL
                     VLVSDHGFNSDDKIYSQGYNLVKLLGSRAGGGHHTITKRRLMLDYSLKGVNPLVPLIT
                     TTTPDTYYLKGESTTYPTAMLDFDGNERASVHLRDSDMNLLHILLLQLQRRDLQEDVR
                     KAVFDEFFAVIERRRADWQRDLDGLNTELGALSHAIEEQRKLWESQPKKFTKEQQNAG
                     LDDKAKRIFVQLDRWQMEHKEYTEYAATLQNLLKLSAEAFSPGQIKIPTVISKQSMGG
                     RNSIYQLQNYIAGIAPGGLVLDNDGSLNMERSFVRIDYFALLQGVTVRNNVQRGISNR
                     PVDMIATRLPREAVLPLIEDKEIDPDVVWVTAGPHRQALLLSRRDAAGNLSLRYLPIA
                     NLTEDASGRFSFQPISWQAGLPLRIFEDPNLIIPATDRTAWLSEWHTDQEWLEALHRT
                     HYSNGLVGLHEELARHRNEKLSSEDASLSNQERVMRDYERRKRELVEPDMLIVAQDHW
                     NFDVRGFNPGGNHGSFFRISTHSVFMVAGGQNTNIPRALDINKPYDSLSFVPTLLALT
                     GDIRDDNEPVPTLRERGFNRFPGRVVQELVPAQQQTGSQQR"
     gene            complement(3252..>3798)
                     /locus_tag="VGD38_09395"
     CDS             complement(3252..>3798)
                     /locus_tag="VGD38_09395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728271.1"
                     /translation="AAKIERDRRAEMMPLEHGRNAQIAFRALNILTFGRYVHREEHTV
                     DMEDRLDIARRLQYHTKFLQQIAKTSAEVEITSNMTEVLRSLHFIAQHGSEAGASAAS
                     ATAKIFARTKDEETRRACLDSLSRIGNPKAKNELLRISQNPAVDQTFRDIATDYLRGV
                     SPPVQPIAVTVNASPVKVGQP"
BASE COUNT          771 a         1078 c         1132 g          817 t
ORIGIN      
        1 aatcgtagac tttcgactcg atgtggtaga tgtgatcgcg gcgtttgaga atcactttcg
       61 gactcagacg caactgcgcg agccggtcga ttatccacgt catcaacatt acgcgccgct
      121 tcgctgcgat cgcaacggcc acgatgccga gcgtggcgat gagtgcgatg ccgaccagca
      181 cgaagttgac ttcttccggc agtggatacc accacaacat cacgaccgcg ccggtcaaca
      241 caaagaagac taccgacaag ttgtaaagca gattgtcgac gacgagtgcc gtaacgccgt
      301 aggtgagtgg cactcgtttg cgcaacagcg cgaccttcgt cgcttcgccg agcagtggac
      361 cagtgaacgt cagaaaactg atcgcttcgc cgccgagacg cgcggcaaag gcgtgtcgaa
      421 acgagatgcg ccggtgttcc ggcggaactg ccgcgcgcat cgcgatcgtg cgcaggaagt
      481 gacgcaagcc gctgagcgcg acgatgacga agaagccgaa gccgatgcgc agcagagcgt
      541 cgaacaacgg ctgcacgccg acgcgattga tgacgaagat tagcagcccg agaccgagca
      601 ggaaggcgaa tgcttgcagc cagacgaagg agcggcggga ggtgttcgca gcggaagttt
      661 cggcttcttc cgagagttct tctgtgtcgg tgtccggcca gttttccgcg aactcttctc
      721 tcgactctat catctctgtt gactgccggt ttgctgttga gcgggaacca gctcttgcac
      781 cacacgaccg gggaagcggt tgaatcctct ttcccgcaat gtcggaaccg gttcgttatc
      841 atcgcgtata tcgccggtta atgccaacag cgtcggcacg aaactcaaac tgtcgtaagg
      901 tttgttgatg tcgagtgcgc gcggaatgtt ggtgttctga ccgcccgcga ccatgaacac
      961 cgaatgcgtc gagatgcgga agaacgagcc gtgattgcct ccgggattga atccgcgcac
     1021 gtcgaagttc cagtgatcct gcgcgacgat cagcatgtcg ggttcgacga gctcacgttt
     1081 gcgccgttcg taatctctca tcacgcgttc ctggttgcta agacttgcgt cctcagacga
     1141 gagcttttca ttcctgtgtc gcgcgagctc ttcgtgcaag ccaaccaggc cgtttgaata
     1201 gtgcgtgcga tgcagtgctt cgagccactc ctgatcggtg tgccactcgc tcaaccaagc
     1261 tgtgcgatcc gttgccggaa taatcaggtt cggatcttca aagatgcgca acggcaaacc
     1321 cgcctgccaa ctgatcggct gaaaactaaa acggccactc gcatcttccg tgagattggc
     1381 aatcggcaga taacgcagac tcagattccc cgcagcgtcg cgccgagaga gcaacagcgc
     1441 ctgtcgatgg ggaccggcag tgacccaaac aacgtccggg tcgatctcct tgtcttcgat
     1501 caacggcaac accgcttcac gcggcagacg cgtcgcgatc atgtcgaccg ggcgattgct
     1561 gatgccgcgc tgcacgttgt ttctgacagt gacgccctgc agcagcgcga aatagtcgat
     1621 gcgtacgaag ctgcgttcca tgttcagcga gccgtcgtta tcgagcacga ggccgccggg
     1681 cgcgataccg gcgatgtagt tttgcagttg atagatcgag ttgcgaccgc ccatcgactg
     1741 tttcgaaatc accgtcggaa tctttatctg cccgggtgaa aacgcttcag cggaaagctt
     1801 cagaaggttc tgcagcgtcg ccgcgtactc ggtgtattcc ttgtgctcca tttgccagcg
     1861 atcgagctgg acgaagatgc gtttcgcttt gtcgtcgaga ccggcgttct gttgttcctt
     1921 cgtgaacttc ttcggctgcg actcccagag tttgcgttgc tcttcaatcg cgtgactcag
     1981 cgcgccgagt tcagtgttca acccatcaag atcgcgctgc cagtcagcgc ggcggcgttc
     2041 aatcacggcg aagaactcgt cgaacacagc tttgcgaacg tcctcctgca gatcgcgacg
     2101 ttgcagttgt agcaacagga tgtgcagcag attcatgtcg ctgtcgcgca aatgcaccga
     2161 cgcgcgttcg ttgccgtcaa aatcgagcat cgctgtcgga tacgtggtgc tctcgccttt
     2221 gaggtagtag gtgtccggcg tggtcgtcgt gatcaacggc acgagcggat tcacgccttt
     2281 gagcgaatag tcgagcatca ggcggcgctt ggtgatcgtg tgatgtccgc cgccggctcg
     2341 gctgccgagc agtttcacga ggttataacc ctgactgtag atcttgtcgt cgctgttgaa
     2401 gccgtgatcc gaaacgagca cgagcgcggt gtcgtcagcc attggactct gctgaatggc
     2461 cgtccacacc tgaccgatga tggcgtccat ctgtttgagc acgaagacct gcgactgctt
     2521 gtcgttgttg tgatgcgcga tgtgatcgaa gtcggcgaga aagagatcga gataacggat
     2581 cttcggattg ttcaacttgc cgatgagctc gcgaacgagt tgatcgcgca acgcgctgcg
     2641 cagttcgaaa cccatcgtcc actcgtcaaa gagctctttc ggcgactttg taaaccgtcc
     2701 ctgcaaactg ccctgcaaag ttgaataacg tatgccgcgc ccataaagcg agaacgtcag
     2761 gtaacgttcg tcgtgcccgt aagcgtcggc aagcatcggc aagccgagcg agtcgagcac
     2821 ttcaacgccg cgcatgtcga tccgcgcgcc gacgacgccg gcgacgtaaa gcgggaagaa
     2881 gttcaggtag tcgtaggagt gaagcgtgta gcgatcgaac tcgacgttgc ctttgatctg
     2941 caggtgttgc ccggtctcga tcaacgacca cgaaggcgct gacaagctca tgccgcgcac
     3001 gtaaaaacta gagagccgcg agccgcgctg gtaaaagatg tgatccatcc acggcaacgt
     3061 gctcttgccc gtgtcgttgt cgcgctgctt caccaggcga tcgacaagat cgtacggcag
     3121 accgtcgcac ttgatgacga cgagtcgctt ggtgttcgcg agtgccgtcg cctgcgacgc
     3181 gcagcaaacg agtgcgacga cgaggagcag ccacagcttg cgcagataag agccagcgcg
     3241 cgagtccatc gttatggctg gcctaccttg actggcgagg cgttaaccgt gacggcgatt
     3301 ggctggactg gtggactgac gccacgcagg taatcggtgg cgatgtcgcg gaacgtctga
     3361 tcgacagccg gattttgcga gattcgcagc agttcgtttt tcgctttcgg gttgcctatg
     3421 cgcgacaaac tgtcgagaca cgcgcggcgt gtttcttcgt ctttcgtgcg cgcgaagatc
     3481 ttcgccgtcg cagacgcggc gctggcgccg gcctcggaac cgtgctgcgc gatgaagtgc
     3541 aacgagcgga gcacttcggt catgttcgac gtgatttcga cttccgcact cgtctttgcg
     3601 atctgctgca ggaacttcgt gtggtattgc aaacgccgcg cgatgtcgag ccggtcttcc
     3661 atgtcgacag tgtgttcctc gcgatgcacg tacctgccga acgtcagaat gttcagggca
     3721 cgaaacgcga tctgcgcgtt gcgtccgtgt tccagcggca tcatttccgc gcgtcggtct
     3781 cgttcgattt ttgcggcc
//
LOCUS       DASWTX010000615         1904 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_245733, whole genome shotgun sequence.
ACCESSION   DASWTX010000615 DASWTX010000000
VERSION     DASWTX010000615.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1904)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1904)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1904
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245733"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..356
                     /locus_tag="VGD38_09400"
     CDS             <1..356
                     /locus_tag="VGD38_09400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728272.1"
                     /translation="LCTTKGGALRDQKNYDAALQLATQAHNFDAKSFHPCTLLGAIYF
                     ETNNPVLGEKWFAMAEQRGATRDALDGEVRAILRRLSDDRREALIQHLLDADPVGYAW
                     LAAKKTRKRSERRNY"
     gene            390..887
                     /locus_tag="VGD38_09405"
     CDS             390..887
                     /locus_tag="VGD38_09405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728273.1"
                     /translation="MRLMRVIAISALLSVTAFAQGFPWDIFKPRTLKEVTSITTKAVR
                     PDDHMFLAQDQLESRVEVVFTGKSRPISKVRKTFIETWFGMLRAKQKKLAELYENEYL
                     YKEGETEYWLPTSTPITKYFDKELKPGDKMDLYLISIGAYRTDTDIDCVLLVEEFQKK
                     AAQEK"
     gene            888..1322
                     /locus_tag="VGD38_09410"
     CDS             888..1322
                     /locus_tag="VGD38_09410"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEY0728274.1"
                     /translation="MTINKDAKGMGMPWEADYGYAQAVKVGDTIYVSGQLSHDDEGNF
                     VGAAPLDDQGRILDHSNMEIQMRQTYANAKKLLEQYGASLDNVVEEVVYVTDMNAAFA
                     AAGRVRKEAYGSEKPDVASTIFVTPRLAFPHQLIEIKFVARV"
     gene            complement(1336..1797)
                     /locus_tag="VGD38_09415"
     CDS             complement(1336..1797)
                     /locus_tag="VGD38_09415"
                     /inference="COORDINATES: protein motif:HMM:NF014608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEY0728275.1"
                     /translation="MSEVIVRSLANLRNEVSYGAGHTFITDDPVAAGGEDAGPDPYTL
                     LLSALGSCISMTVTLYARRKQWPLEQVTVRLRQNRIHSKDCKECNEKEGYIHRIERSV
                     SFEGPLTDEQRTRLQEIAHKCPVHKTFTSPIVVAELKDEETLEDSEPGEFF"
BASE COUNT          470 a          498 c          544 g          392 t
ORIGIN      
        1 cattatgcac gaccaaaggc ggagcgttgc gcgatcagaa gaactacgac gcggccttgc
       61 agttagctac gcaggcccac aacttcgacg cgaaaagctt tcatccgtgt actctcctgg
      121 gggccatata cttcgagacc aacaaccctg tgctcggtga gaaatggttt gcaatggccg
      181 agcagagagg cgccacgcgc gatgctcttg acggcgaagt tcgtgcgata ctccgtcgtc
      241 tcagcgacga ccgtagagag gcgctcatcc agcacttact cgacgcggat ccggtgggct
      301 acgcatggtt ggctgcgaag aaaacaagaa aacgaagtga gagacgtaac tattgaagtg
      361 gcacgagggt gcctgacagg aggcacgaca tgcgattaat gcgggtgata gcaatctcag
      421 ctctgttgag cgtcacagct tttgcgcagg gattcccctg ggacattttc aaaccgcgaa
      481 cactcaaaga agtcacatcc attactacta aggcggtgcg gcccgacgat cacatgttcc
      541 tcgcacagga ccagcttgag tcgagagtcg aggtggtctt caccgggaaa tcgcggccga
      601 tcagcaaggt gcgaaagact ttcatcgaaa cgtggttcgg aatgctccgc gccaagcaga
      661 agaaactcgc cgagctatat gagaacgagt atctctacaa agaaggtgaa accgagtact
      721 ggctccccac ctcaacgccg atcacgaagt acttcgacaa ggagctaaag cccggcgaca
      781 agatggacct gtacctgatc tcgatcggcg cctaccgcac cgatacggac atagattgcg
      841 ttttgttagt tgaagagttt cagaagaagg cggcgcagga gaaatagatg actatcaata
      901 aagatgcgaa aggcatgggc atgccgtggg aagccgatta tggctatgca caggcagtta
      961 aggtcggcga tacgatctac gtgtcgggcc aactgagtca cgacgatgaa ggaaacttcg
     1021 ttggcgcagc accgctggac gaccagggcc ggatactgga ccactcgaac atggaaatcc
     1081 agatgaggca aacgtatgcg aacgcaaaga agctgctcga gcagtatggc gccagcctgg
     1141 ataatgtggt tgaagaagtg gtgtatgtca ccgacatgaa tgcagcgttt gccgcggcgg
     1201 ggcgagtgag aaaggaagcg tacggatcgg agaagcctga cgttgcgagc acgatctttg
     1261 tgactccgcg gttggcgttt cctcaccagc tcatcgagat caagttcgtc gccagggttt
     1321 agtcgagcgg cgaagttaga agaactcgcc gggttcgctg tcttcaagcg tctcttcatc
     1381 tttcaactct gccacgacga tgggtgaggt aaacgtctta tgcacgggac acttgtgcgc
     1441 gatctcctgg aggcgcgtgc gctgttcgtc tgtgagtggg ccctcaaaac tgacggagcg
     1501 ttcgatgcgg tggatgtagc cttctttctc gttacattct ttgcagtcct ttgagtgaat
     1561 gcgattctgc cgcagacgca ccgtcacttg ctccagcggc cactgcttcc tgcgcgcgta
     1621 aagcgtcacg gtcatcgaga tgcaactgcc gagcgcgctc agcagcaacg tgtagggatc
     1681 gggaccagcg tcttcgccgc ccgccgcaac ggggtcgtcg gtgatgaaag tgtgacctgc
     1741 accgtaactc acttcgttgc gcagattcgc cagcgaccta acaatcactt cactcatcgt
     1801 ggtgctccat ttctgacttt gcgcgtttaa acgaaaaact ctacactcga ccgccgtttg
     1861 gcaaaaacat caaaaaccaa tactaaggct ctcgcatgaa gatt
//
LOCUS       DASWTX010000616         1875 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_74235, whole genome shotgun sequence.
ACCESSION   DASWTX010000616 DASWTX010000000
VERSION     DASWTX010000616.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1875)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1875)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1875
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74235"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..529
                     /locus_tag="VGD38_09420"
     CDS             <1..529
                     /locus_tag="VGD38_09420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728276.1"
                     /translation="AQEFQIVVEGQENMSVADRTALVEFQQKAVRLQRAVNGATQAAN
                     GLRPRFTAIKRAIAETPSLPARLYEDAMALEKRNNEILRALSGDSAARQRNMNTPPSI
                     NDRVGYVVGAQRMSTARPTQTQQNQYTAAAQDFEGVLVQLRQLIEVDLARLEKHLESA
                     GAPWTPGRIPEWKDQ"
     gene            576..>1875
                     /locus_tag="VGD38_09425"
     CDS             576..>1875
                     /locus_tag="VGD38_09425"
                     /inference="COORDINATES: protein motif:HMM:NF028457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5117 domain-containing protein"
                     /protein_id="HEY0728277.1"
                     /translation="MRRLGLIALLVFASTVHAQSISEKVKGMERFPGFFTFYWDARAG
                     KIWLEIDKWNTEFLYVESLPAGIGSNDLGLDRGQLGSSSIVRFDRTGPRVLLVAPNYS
                     FRATSNNADERLAVKDAFAESTLWGFEVAAEESGRVLVDATNFYLRDVHQVTNTLQRS
                     QQGTYRLDPTRSAFYLPNTKNFPRNTEVETTLTFTGEPTGQLTRRVVPVPEAITVRER
                     HSFVQLPEPGFKPRVFDPRAGYFGIDYMDFATPIEDQITKRFIARHRLQKKDPSARVS
                     EAVEPIVYYVDRGAPEPVRSALLDGARWWNQAFEAIGYKDAFRVEVMPPEVDPMDVRY
                     NVIQWVHRSTRGWSYGNALTDPRTGEIIQGRVSLGSLRDRQDLLIAEGLLAPYNNTNT
                     ASPKLLEMVLARLRQLSAHEVGHTLGLQHNYAASPVGRASV"
BASE COUNT          398 a          561 c          562 g          354 t
ORIGIN      
        1 cgcgcaggag tttcagattg tggtcgaggg tcaggagaac atgtcggttg cggatcgcac
       61 ggcgctggtt gagttccagc agaaagcggt gcgtttgcaa cgcgcggtga atggcgcaac
      121 gcaggcggcg aatggactgc ggccgcggtt cacggcaatc aaacgcgcga ttgcggaaac
      181 accgtcgctg ccggctcgtc tatacgaaga cgcgatggcg ttggagaaac gaaacaacga
      241 gattctccgc gcgttgagtg gtgattcggc cgcgcggcag cgaaacatga acacgccgcc
      301 ctcgatcaac gaccgcgtcg gttacgttgt cggcgcgcag cgcatgtcca ccgcgcgtcc
      361 gacgcagacg cagcagaacc aatacaccgc cgcggcccag gacttcgaag gcgtcctggt
      421 ccaactgcgc caactgatcg aagtcgatct cgctcgtctc gaaaaacatc tcgaatcagc
      481 cggcgccccc tggacccccg gccgcattcc ggagtggaaa gatcagtaac gtccatgtcg
      541 agattcctaa aacccctgtc ccaaaggagc tacgcatgag acgtctgggc ttaatagcgc
      601 ttctagtctt cgcttcaacg gttcacgcgc agtcgatcag tgagaaggtg aaggggatgg
      661 agaggtttcc ggggttcttc accttctatt gggatgcgag ggcggggaag atctggttgg
      721 agatcgacaa gtggaacact gagtttctgt acgttgaatc attgccggcc ggtatcggtt
      781 cgaacgatct cggcctcgat cgcggacaac tcggcagcag ttcgatcgtg cgtttcgatc
      841 gcactggacc acgcgtcctg ctagtggcgc cgaattattc tttccgcgcc acttcaaata
      901 acgccgacga acgtctcgcc gtgaaagacg cattcgccga atcgacgctc tggggcttcg
      961 aggtcgcggc tgaagaaagc ggacgcgtgc tcgtcgacgc gaccaacttc tacctgcgcg
     1021 acgttcatca ggtcacgaac acgctgcaac gcagccagca gggaacttac cggctcgatc
     1081 cgacccgcag cgctttttac cttccgaaca ccaaaaactt tccacgcaac acggaagtcg
     1141 aaacgacgct gacgttcacg ggcgagccaa ccggtcaact cacgcgccgc gtcgtgccgg
     1201 tgccggaagc gatcacggtt cgcgaacgtc attcattcgt gcagttgccc gaacccggct
     1261 tcaaaccgcg cgtgttcgat ccgcgcgccg gttatttcgg tatcgactac atggacttcg
     1321 cgacgccaat cgaagatcaa ataaccaaac gcttcatcgc gcgtcatcgc ttgcagaaga
     1381 aagatccgtc ggcgcgcgtg agcgaagcag ttgaaccgat cgtttactac gtcgatcgcg
     1441 gcgcgcccga accggttcgt tcggcgctgc tcgacggcgc gcgctggtgg aaccaggcgt
     1501 tcgaagccat cggttacaaa gacgcgtttc gcgtggaagt gatgccgccc gaagtcgatc
     1561 cgatggacgt gcgttacaac gtgatccagt gggtgcatcg ttcgactcgc ggctggtcgt
     1621 acggcaacgc gctcacagat ccgcgcacgg gcgagatcat tcaaggacgc gtttcgctcg
     1681 gctcgttacg cgatcgccag gatctactga tcgccgaagg tttgctcgcg ccgtacaaca
     1741 acacgaacac cgcgtcgcca aagctgttgg aaatggtgct cgcgcgtttg cggcaactct
     1801 cggcgcacga agtgggtcac acgttgggac tgcaacacaa ctacgcggca agcccggtcg
     1861 gccgcgcttc ggtga
//
LOCUS       DASWTX010000617         5546 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_223980, whole genome shotgun sequence.
ACCESSION   DASWTX010000617 DASWTX010000000
VERSION     DASWTX010000617.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5546
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223980"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..512)
                     /locus_tag="VGD38_09430"
     CDS             complement(<1..512)
                     /locus_tag="VGD38_09430"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY0728278.1"
                     /translation="MGETPKPEGSLTRVEAGGLTFGLSTWGPAEAPPLLMLGHAPDMP
                     FSLEPLAASLASSTSPRRVLLPERIDLGPDRHFRAIANDIAKLIEALDCGRVDLVGIG
                     FGGTVAIHLAIAEPRLVRALALVDAPLPNIHSIDADLSRRLAEAYAYVADFLEPGFES
                     KVANGDDGLLS"
     gene            675..3188
                     /locus_tag="VGD38_09435"
     CDS             675..3188
                     /locus_tag="VGD38_09435"
                     /inference="COORDINATES: protein motif:HMM:NF018471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipase maturation factor family protein"
                     /protein_id="HEY0728279.1"
                     /translation="MHSLLEQLATESSRLLIWGLVPRAVGLIFLIAYGSLWFQILPLL
                     GSRGISPVGLQLNRLREDLPLFARLRLNPSLLWLAHGDVALRVYIGAGMLGACAMIVG
                     GRVGWWGALCCWAIWLSLHFSLRLVYPWDTVLLEAGFLCLFAPAGALLPQLSATALPH
                     PLLPFIFHLLLFRLLLGFGKMKFIGIRRGDWNYTRYFLINMPLCTPLGWRFSRLPNPF
                     HKLTLAGIAFVELVCPVLVLIPGPTRLIGGAGIVAQMIGIQLTGNFGYFNWLTAALCI
                     STLDVSSSLFTALADPAALVSRERLLFTLVAAFIILATPVYLIFNSWFNYGFLSWPAW
                     ERLRPGPLRAFLAVLRFFEPLHPVNAYGVFHAQAAPPQRWVTVVEGSDDGVEWKKYRY
                     RYTMTDDSSRPRYVAPHHPRLDHQTFYDAAGVDGTGYFQPLSFTDPYLLTPASVLDRT
                     MQRLLEPEAPGATLFAETPFVDGPPRFARVALYRFTAMTAEEQKETNRHWKVMPIGLH
                     IPPTEVDERVWKQWVPPPELFHGEAPLWRRRARVCKGINSVELRALWEDFLPFVKQTA
                     ASIAPDEPFSWSTLPTLQKALRQRYQPDELRAFQLTLGRLTMVLMARFDAVFSRPASH
                     FFRDVVGIRRGFESDFDPFTAASNAERVWQALAAWPHGALRTRFHVWLVAQWAILNGE
                     REGWSRLAGPDASLVGNGASIRTVVQLSRCGRRSMSAAADELRLDLAAVLDVARNLTI
                     ANGMFLEGVVNYDVLSRHASRLRVLYSSAEGHTKVPTGLFPGVFETAAELCDQPSLCM
                     MYGWGENTQLAPLVDPPPMVFGDDCVWRELNVQDVVKES"
     gene            complement(3183..4175)
                     /locus_tag="VGD38_09440"
     CDS             complement(3183..4175)
                     /locus_tag="VGD38_09440"
                     /inference="COORDINATES: protein motif:HMM:NF044697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728280.1"
                     /translation="MSILIVTHSDDNDSIARVAETIARKGGHVIRFDTDRYPTEVRLT
                     AYYGATDRLTLTNEEGEFDLREVTAIWHRRLNFGAQLPASLDKQLRYASLGETSAAAH
                     GMLASLKAFRVDHVQHIRHAENKQLQLQVAREVGLDTPRTLTTNDPAAVRAFAKSCED
                     GMITKMLSSFAIYEEGKELVVFTNPVKPEDLADLSGLNLCPATFQELLQKSLEIRVTV
                     VGHRVMSAAVDSQVSARATHDWRRDGVRMIQDWQPYQLPLDVEEKVLRLMDHFSLNYG
                     AIDIILTPDGRHVFLELNPCGEFFWLERAPGLPISDAIADLLLGHAPRRESNLS"
     gene            complement(4184..5167)
                     /locus_tag="VGD38_09445"
     CDS             complement(4184..5167)
                     /locus_tag="VGD38_09445"
                     /inference="COORDINATES: protein motif:HMM:TIGR04185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MvdC family ATP-grasp ribosomal peptide
                     maturase"
                     /protein_id="HEY0728281.1"
                     /translation="MTSPFRDAVLLLTHSDDFYTIDLVSEALARKGVRPIRFNTDLFP
                     SSVQLSARAGDERAAQLTTEPGEQVSVADVRAVWARKIWTPRMSDDLDERYRAMCIGE
                     SVAALEGFLDALHDAHWVNDLERQRAAENKQRQLRLAALAGLRVPRTLVTNDPVAARQ
                     FFAETDGQTVAKLLRPVAISMDAAQPFVYTSRVREEDLAEAETLRHSPMVFQELIPKM
                     YELRVAFVAGEVFAGAIDASGTSRGQVDWRRVAREECRWQKAELPVEVASGLRAMMSE
                     LGLVFGAIDLICTPSGEYVFLEVNPGGEWGMLERDLGLPIAEAIAKALLEN"
     gene            complement(5274..5456)
                     /locus_tag="VGD38_09450"
     CDS             complement(5274..5456)
                     /locus_tag="VGD38_09450"
                     /inference="COORDINATES: protein motif:HMM:NF033738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microviridin/marinostatin family tricyclic
                     proteinase inhibitor"
                     /protein_id="HEY0728282.1"
                     /translation="MRDKIESPAPETSEPSRPFFARFLEGQDRSNEAYLTLKYPSDRD
                     EIDQRIEYMSGNNGQQ"
BASE COUNT          971 a         1520 c         1781 g         1274 t
ORIGIN      
        1 gaaagtaaac cgtcgtcgcc gttcgcgacc ttcgactcga atcccggctc gagaaaatcc
       61 gcgacatacg cgtatgcttc ggcgaggcgg cgtgacagat cggcgtcgat gctgtggatg
      121 ttcggcaacg gcgcgtcgac gagcgcgagc gcccgcacca gacgcggctc cgcgatcgcg
      181 agatggattg ccacagtccc gccgaagccg atgccgacga gatcgacgcg gccgcagtcg
      241 agtgcttcga tgagtttggc gatgtcgttc gcgatcgcgc ggaagtgccg gtcgggtccg
      301 agatcgattc gttcgggtaa aagaacgcgc cgcggagacg tgctactcgc taatgacgct
      361 gccagtggtt caagactgaa cggcatgtca ggcgcgtggc ccaacatcaa caacggcgga
      421 gcttcagccg gcccccaggt gctcaggcca aaagtcagac ctccagcttc gacccgcgtg
      481 agagatcctt caggtttggg tgtttcaccc ataggtattc accagcgtaa ggtaaatgag
      541 aggacgacaa tgacggtgcg acgacgcctg actttacact agcgcttcac ggcctgtaaa
      601 ctcttcgcct ctcgaacgcg ggttgtattt taggtactcc gccgccttcc tctaacaacc
      661 aaccgagtgt gccgatgcat tctctgctgg agcaattggc tactgagtcg tcgagactcc
      721 tcatttgggg cctggttcca cgtgctgtcg ggctcatctt tcttatcgcc tacggatcgc
      781 tgtggtttca aattctcccg ctgctgggaa gccggggcat ttcgcctgtc ggtttgcagt
      841 tgaatcggct gcgcgaggat ctgccgcttt tcgcgcgtct gcggctgaac ccgagtctgt
      901 tgtggctcgc gcatggcgac gtggctttgc gtgtttacat cggcgcggga atgctcggcg
      961 cgtgcgcgat gatcgtgggc ggtcgggtcg gttggtgggg cgcgctgtgc tgttgggcga
     1021 tctggctctc gttgcacttc tcgctgcgtc tcgtttatcc gtgggacacg gttttgctcg
     1081 aagcgggatt tctgtgtttg ttcgcgccgg ccggtgcgtt gttgccgcag ttgtcggcga
     1141 cggcgctgcc gcatccgttg ctgccgttca tctttcactt gttgctgttt cgcttgctgt
     1201 tggggtttgg aaagatgaag ttcatcggca tccgccgcgg cgactggaac tacacgcgct
     1261 atttcttgat caacatgccg ctgtgcacgc cgctgggctg gcgcttcagc cggctgccga
     1321 atccgtttca caaactgacg ctcgcgggaa ttgctttcgt ggagttggtg tgtccggtac
     1381 tggtgctgat tcctggtcca acgcggctga ttggcggcgc ggggatcgtg gcgcagatga
     1441 tcgggattca gcttacgggc aactttggtt acttcaactg gctgacggcg gcgctgtgta
     1501 tctcgacgct cgacgtcagt tcgtcgctgt ttacggcgct ggcagatccg gctgcgctcg
     1561 tgtcgcgcga gcgactgttg ttcacgctgg ttgccgcttt cattattttg gcgacgccgg
     1621 tttatttgat cttcaacagt tggttcaact acgggtttct ttcgtggccg gcgtgggaac
     1681 gtttgcgccc tgggccactg cgcgcgtttc tcgcggtgtt gcgtttcttt gagccgttgc
     1741 atccggtgaa tgcgtatgga gtgtttcatg cgcaggctgc gccgccgcaa cgttgggtga
     1801 ctgttgttga gggtagcgac gacggtgtcg agtggaagaa gtatcgttac cgctacacga
     1861 tgacggacga ttcgagccgt ccgcgatacg tggcgccgca tcatccgcgg ttggaccatc
     1921 agacgtttta tgacgcggcg ggtgttgatg gaacgggtta ttttcagccg ttgagtttca
     1981 cagatccgta cttgttgacg cctgcatcgg tgttggaccg gacgatgcag cgattgctgg
     2041 agccggaagc gccgggtgcg acgctgtttg ccgaaacgcc gtttgttgat ggtccaccac
     2101 ggtttgctcg tgtggcgttg taccggttca cggcgatgac ggcggaggag cagaaagaga
     2161 cgaatcgtca ctggaaagtg atgccgatcg ggttgcacat tccgccgact gaagttgatg
     2221 agcgggtttg gaagcagtgg gttccgccgc cggagctgtt tcatggcgaa gcgccgctgt
     2281 ggcgccggcg tgcgcgcgtt tgtaaaggaa ttaattcggt tgagttgcgc gcgttgtggg
     2341 aggattttct gccgttcgtg aagcagacgg cggcttcgat tgcgcctgat gagccgttct
     2401 cgtggtccac gttgcccacg ttgcagaaag cgcttcggca gcgttatcag ccggatgagt
     2461 tgcgtgcgtt tcagttgacg cttggacggc tcacgatggt gttgatggcg cgcttcgacg
     2521 cggttttcag ccggcccgca tcgcatttct ttcgcgacgt tgtcggaatc cggagaggct
     2581 ttgaatcgga ttttgatccc ttcacggcgg cgtctaatgc cgaacgcgtc tggcaagcac
     2641 tcgccgcgtg gccgcacggc gcgttacgca cgcgcttcca tgtgtggctc gtagctcaat
     2701 gggcaatact aaatggcgaa cgggaaggct ggagcaggct tgccggtcct gacgcttctt
     2761 tggttggtaa cggcgcatca ataaggactg tcgtacaatt gtcacggtgc ggtcgccgat
     2821 cgatgagtgc cgcggccgat gagctcagac tcgatctcgc cgcagtgctc gacgtcgctc
     2881 gcaatctcac aatcgcgaac ggcatgtttc tcgaaggtgt tgtgaactac gacgtgcttt
     2941 cacgtcacgc gagccgcctg cgtgtgcttt attcttcagc cgaaggtcac acgaaagtcc
     3001 cgaccggcct cttccccggc gtcttcgaga ccgccgcgga gctgtgcgat caaccgtcac
     3061 tctgcatgat gtacggctgg ggagaaaaca cacagctcgc cccgctcgtc gatccgccgc
     3121 cgatggtctt cggcgacgac tgcgtctggc gcgagctgaa cgtgcaggac gtcgttaaag
     3181 agtcatgaaa gattcgattc gcgccgcggg gcgtggccga ggaggaggtc ggcgattgcg
     3241 tcggagatcg gcaggcccgg agcgcgttcg agccagaaga attcgccgca ggggttgagt
     3301 tcgagaaaga cgtgacgtcc gtcgggtgtg aggatgatgt cgatggcgcc gtagtttagc
     3361 gagaagtggt ccatcagacg caggactttc tcctcaacgt cgagcgggag ttggtagggc
     3421 tgccagtctt gaatcatgcg cacgccgtcg cgtcgccagt cgtgtgtggc gcgtgcggag
     3481 acttgtgagt cgacggcggc agacatcacg cggtgaccga cgactgtgac acgaatctca
     3541 agcgatttct ggagcagttc ttgaaacgtc gcggggcaga gattcaggcc ggaaaggtcc
     3601 gcgagatctt cgggcttcac aggattggtg aagacgacga gctcttttcc ttcctcgtag
     3661 atcgcgaacg acgagagcat cttcgtgatc atcccgtctt cgcaactctt cgcgaaagcg
     3721 cgcacggctg cggggtcgtt cgtcgttaac gtgcgcggtg tgtccaatcc gacttcgcga
     3781 gccacctgta attgaagctg cttgttttcc gcgtgacgga tgtgctgtac gtgatcgacg
     3841 cggaaggctt taagactggc gagcatgccg tgtgcggcgg cgctcgtttc gccgagtgac
     3901 gcgtagcgca gttgcttgtc gaggctggca ggaagttgcg cgccgaagtt gagacgtcgg
     3961 tgccagatgg ctgtgacctc gcgcagatca aactcgcctt cttcgttcgt caaagtgaga
     4021 cggtctgtcg cgccgtagta agccgtgaga cgcacttcgg tcggatagcg atcggtgtca
     4081 aagcggatca cgtggccgcc tttgcgggca atggtctcag ccactcgcgc gatgctgtcg
     4141 ttgtcgtcgc tgtgtgtaac gatgagaatg gacatatcaa tctttagttt tcgagtagcg
     4201 ctttcgcgat ggcttcagcg atgggaagac cgaggtcgcg ttcgagcatg ccccattcgc
     4261 cgccggggtt gacttcgaga aagacgtatt cgcccgaagg cgtgcagatc aaatcgatcg
     4321 cgccgaagac gaggccgagt tccgacatca tggctcgcag gccgcttgcg acttcaacgg
     4381 gcagctcagc cttttgccag cgacactcct cgcgcgcgac gcgccgccaa tccacttgcc
     4441 ctcgcgacgt gccactcgca tcgatcgctc cagcgaagac ttcacccgct acaaaagcaa
     4501 ctcgcagttc gtacattttc gggatcaact cttgaaacac catcgggcta tggcgaagcg
     4561 tctctgcctc cgccaggtct tcttcccgaa cgcggctcgt gtaaacgaac ggctgagcgg
     4621 catccatgct gatcgcaacc ggacgaagta gcttcgctac cgtttggccg tctgtttctg
     4681 cgaagaactg acgcgccgca acgggatcgt tggtgacgag tgtgcgcggg acgcgcagtc
     4741 ctgcgagcgc agccagtcgg agttggcgct gtttgttttc cgcagcgcgt tggcgctcga
     4801 gatcgttgac ccagtgcgcg tcgtgaagcg cgtcgagaaa accttcgagc gcggcgacgg
     4861 actcgccgat gcacatcgct cgataacgct cgtcaagatc gtcagacatg cgcggcgtcc
     4921 agatcttgcg cgcccacaca gcacgcacgt ccgcgacgga aacctgctca cccggttccg
     4981 tcgtgagctg tgcggcgcgt tcgtcgcccg cacgcgccga gagttggacc gacgacggaa
     5041 agagatcggt attgaagcga atgggtcgga cgcctttgcg tgcgagagct tctgagacga
     5101 gatcgatagt gtagaagtcg tcgctgtgtg tcagcagtag aacagcgtcg cggaatggtg
     5161 aagtcatgcg tccgaggaga ggcgattcaa gcgtgcggcc cgcatccgag caccggcgcg
     5221 acgggaccaa ctatcgcgcg aatgctccca aacgagggcc gcactttgtt gtattactgc
     5281 tgtccgttat tgcctgacat gtactcgatt cgctgatcga tctcgtcccg gtcggacgga
     5341 tacttgagcg tcaggtaggc ttcattcgat ctgtcctggc cttcgagaaa acgcgcgaag
     5401 aacggccggc tcggctcgga ggtttcaggg gcgggtgatt ctatcttgtc tcgcattgag
     5461 ttgatctcct ttaaggttga actgagttat tgcgaggtat caaactacga gacctctgat
     5521 gcggcgaagc gcttttgaga tacctg
//
LOCUS       DASWTX010000618         1725 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_419295, whole genome shotgun sequence.
ACCESSION   DASWTX010000618 DASWTX010000000
VERSION     DASWTX010000618.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1725
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_419295"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1042
                     /locus_tag="VGD38_09455"
     CDS             <1..1042
                     /locus_tag="VGD38_09455"
                     /inference="COORDINATES: protein motif:HMM:NF014871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0009166 - nucleotide catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HEY0728283.1"
                     /translation="ETKITSRPGDNVEFRNACDTAKEVVSELHGQGVKVVVALTHLSM
                     REDKEVARCAGVNLIVGGHEHTLLESHAGSAPIFKMTADAREMGRIDLNISKSTGELE
                     SIDWEVIKVTKDTPEAPEFSAVYKKYANLIAELKKPVGRTTVPLDARSAEGRTKETNV
                     GNFITDAFRKATAADVALLNGGSIRADELIPAGQLTVRNVLSLLPFKNKIVKIEITGA
                     TLRAALEHGVSRAAEDAEPGGFPQVSGIQFSFDASKPPGSRIVELKVNGLPLDENRKY
                     TRVAPTFVALDGGDGYSMFKGATVIIPPDKAPMDSDVVQRAISSVRSIAPKVEGRIKR
                     LDTVKKSTPKCN"
     gene            1074..1574
                     /locus_tag="VGD38_09460"
     CDS             1074..1574
                     /locus_tag="VGD38_09460"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728284.1"
                     /translation="MEIHDDSSAGKRYEANQLFHEAYEAQQANDYERAIELYKRSIET
                     YPTAEAHTFLGWVYSFQQRYDEAIEECLEAIRVDDTLGNPYNDIGSYLLAKGDPYGSV
                     RWFKRALLAPRYESYAFPHFNLGRVYETRRRFMDAARHYGLALEQKPDFTEAAVALRR
                     MQARLN"
BASE COUNT          386 a          499 c          505 g          335 t
ORIGIN      
        1 ggaaacgaaa atcacttcgc gtccgggtga caatgtcgag tttcgcaacg cctgcgacac
       61 ggcgaaagag gtcgtctcgg agctgcatgg ccagggcgtg aaagtcgtcg tcgctttaac
      121 tcacctgtcg atgcgcgaag acaaggaagt cgctcgttgc gccggtgtta atctgatcgt
      181 cggcggtcac gagcacacgc tgctcgagtc gcacgcgggt tcggcgccga ttttcaagat
      241 gacggccgac gcgcgcgaga tgggccgcat cgatctcaac atttcgaaaa gcaccggcga
      301 gctcgagagt atcgactggg aagtgatcaa ggtaacgaaa gacacgcccg aggcgccgga
      361 gttttctgcc gtttataaga agtatgccaa tctgatcgct gaactgaaaa aaccggtcgg
      421 acgcacgacc gttccgctcg acgcgcgcag tgccgagggc cggacgaagg aaacaaacgt
      481 cggcaacttc atcaccgacg cgtttcgcaa agcaactgcc gcggatgtcg cgctgctgaa
      541 cggcggctcg attcgcgctg acgaattgat ccccgccggg cagttgaccg tccgcaacgt
      601 cctgtcgctg ctccctttca aaaacaagat agttaagata gaaataacgg gcgccacgct
      661 gcgggctgcg ctcgaacacg gcgtcagccg cgctgccgaa gacgctgaac cgggcggttt
      721 tccgcaggtt tccgggattc agttctcgtt tgacgcgtcc aaaccgccgg gctcgcgcat
      781 tgtcgagttg aaggtcaacg gcctgccact cgacgaaaac agaaagtaca cccgcgtggc
      841 gccgacgttt gtcgcgctcg acggcggcga cggttattcg atgttcaagg gcgcgacggt
      901 gatcattccg ccggacaaag cgccgatgga ttcggacgtg gtgcagcgcg cgatcagctc
      961 cgtgcggtcc atcgcgccga aagtggaagg acgcatcaag cgtttagata cggttaagaa
     1021 atcgactccc aaatgcaact gaaactccag ctccccggat ttggatggac ctgatggaga
     1081 ttcatgacga cagctcggca ggcaagcgct acgaagccaa tcagcttttc cacgaggctt
     1141 acgaggcgca gcaagccaat gactacgaac gcgcgattga gctttacaaa cgttcgatag
     1201 aaacctaccc gaccgctgag gcgcacacgt ttctcggctg ggtttacagt tttcagcaac
     1261 gttacgacga agcgatcgag gaatgtctgg aagcgatccg cgtggacgac acgctgggca
     1321 atccttacaa cgacatcggg agttatctgc tggcgaaagg cgatccgtac ggctcggtgc
     1381 gctggttcaa acgtgcgtta ctcgcgccgc gttacgagtc gtacgccttt ccgcatttca
     1441 acctgggccg cgtttatgaa acgcggcggc ggtttatgga tgcggcgcgt cactacggcc
     1501 tcgcgctcga acaaaaacct gatttcacgg aagcggcggt tgcgctgcga cggatgcaag
     1561 cgcgattgaa ttaaggcacg acgatcttca tcttctcgcc cttttcgtcg acggcgacgt
     1621 aaatcacttc cgcctcggta acgcgaacgc gtgcttcttt ccccaaacgc tcaacctcta
     1681 caatcacacg gaccgtgatc gacgttgtcc cgacgcgcac tgtct
//
LOCUS       DASWTX010000619         2686 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_74291, whole genome shotgun sequence.
ACCESSION   DASWTX010000619 DASWTX010000000
VERSION     DASWTX010000619.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2686
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74291"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..435)
                     /locus_tag="VGD38_09465"
     CDS             complement(<1..435)
                     /locus_tag="VGD38_09465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728285.1"
                     /translation="MQLQANYTFQKTLTNTGGVGQTNFDPLLDINQPGLEYARADYDA
                     AHIFNFNGIFELPFGRGRRWMNQGGLANAIFGGWELTSIVKVATGAPFSILDTRGTLN
                     RTGRSARQTATSNLTKDQIKDLIGIFHTPEGVFFINPSVINTT"
     gene            complement(396..1310)
                     /locus_tag="VGD38_09470"
     CDS             complement(396..1310)
                     /locus_tag="VGD38_09470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728286.1"
                     /translation="MVSFNFVGTNAGGSNFFRWDKNNFAPVFSFAYSPNFTNRLLGGV
                     FPSAGRTVIRGGYRISYVNDEFVRGADNALTGNQGLTQGVSLTNLDLRASGGSPAFET
                     PPFQVPRSYALNNELAGNFGTVFGIDPNLRVPMTQEWNFGVQREIGFQTVFEIRYVGG
                     KSDNLLRALDFNQVNIFGNGFLGDFERARRNLSAFGNPACTAATAAVTGCEVLTVFPG
                     IEAGGLLNNGTIRSLIASGQPGQLAFIYIANAFGGSSNLFLANPNTGVADLLQTVRST
                     GTTRYRQRYAGALLRACSYKRTTRSRKL"
     gene            complement(1297..2139)
                     /locus_tag="VGD38_09475"
     CDS             complement(1297..2139)
                     /locus_tag="VGD38_09475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0728287.1"
                     /translation="MTFRFDIEPSSRQGFSFIIDRGTETNLRPDVDNGGFNRIPFGFQ
                     SADRQSFVAAWRFSPTAAFTNDLRGGWFFSQPIFDRNDVASDFFLTLPLVDSPESTFE
                     RQGRDSHQYTIVDNAVWANGNHSLRFGGQAQFFRLTPFGPPAFSQSTIPTLSIGTGPS
                     TPSLIASQFPGGISSTQLASANNLLALLGGFVESADATFNATSATSGFVQGAFPTRHL
                     NFENYSVYIQDAWRVSPRLTLNFGLRYELFSPIREADRLALEPIIPEGTDPVAAVLNP
                     NGQF"
     gene            complement(2136..>2686)
                     /locus_tag="VGD38_09480"
     CDS             complement(2136..>2686)
                     /locus_tag="VGD38_09480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728288.1"
                     /translation="NITRDGINIQDNFIRSNATDFVPDRPHVDDVSEFTITTQNAGAE
                     KGYGSSQVELVTPRGAQDFHGALFIYNRNSEFAANTFFNNATGVERPFLNRNQFGGRF
                     SGPLPLPRFGEGGPALYHGKGFFFGSYEGFRLRESTSVTRTILLPSARQGIFSYVDAA
                     GVTRQLNVLNAAGVGKTSIAIS"
BASE COUNT          618 a          759 c          758 g          551 t
ORIGIN      
        1 ggtcgtgttg atcaccgacg ggttaatgaa gaacactccc tccggcgtgt ggaagatacc
       61 aatcagatcc ttaatctggt ctttggttag attgctggtc gcggtttgcc gcgcggatcg
      121 accggtgcga ttcaacgtgc cgcgtgtgtc gagaatcgag aacggcgcgc ctgtagccac
      181 cttaacgatc gacgtcaact cccaaccacc aaagatcgcg tttgccaaac cgccctggtt
      241 catccaccgc cttcccctgc caaacggcaa ctcgaaaatg ccgttgaagt tgaagatgtg
      301 cgccgcgtcg taatcggcgc gcgcgtattc gagcccgggt tggttgatgt cgagcaacgg
      361 atcgaagttc gtttgtccga cgccgcccgt gttcgtcaga gttttctgga acgtgtagtt
      421 cgcttgtaac tgcacgccct gagcaaagcg ccggcgtatc tctgtctgta acgagtggta
      481 cctgtacttc gcaccgtctg cagcaagtcg gcgacacccg tgttcgggtt tgccaggaag
      541 agattgctac tgccgccaaa cgcattcgca atgtaaatga acgccaactg tcccggctgt
      601 ccggaagcaa tgagcgaacg aatcgttccg ttgttcagaa gaccaccggc ttcgatcccc
      661 ggaaacacag tcaacacttc acaaccggtc accgccgcag ttgccgcggt gcaagcggga
      721 ttaccgaaag cactgaggtt tcttcgtgcc cgttcgaaat cgccgaggaa cccgttgccg
      781 aaaatgttca cctggttgaa atcgagcgcg cggagcaggt tgtctgactt gccgccaacg
      841 taacgaattt cgaacaccgt ttgaaatccg atctctcgct gaacgccgaa gttccactcc
      901 tgtgtcatcg gcactcgcaa gttcggatcg ataccgaaga ccgtgccgaa gttaccggca
      961 agttcgttgt tgagtgcgta cgaacgcggt acctggaatg gcggtgtctc gaacgcagga
     1021 ctgccaccac tcgcacgcag atcgagattc gtcaacgaca ctccttgtgt aagtccctga
     1081 ttgcccgtca acgcgttatc agcgcctctc acaaattcgt cattgacata actgatgcga
     1141 taaccgccgc gaatcaccgt gcgtccggcg ctgggaaaca cgccgccaag cagacgattc
     1201 gtgaaattag gcgagtaggc gaaactgaac accggcgcaa aattgttctt gtcccaacgg
     1261 aagaagttgc tgccgccggc gttggtgccc acaaaattaa aactgaccat tcggattcag
     1321 aactgctgcg accggatcgg taccttccgg aatgatcggc tcgagcgcta atcgatcggc
     1381 ctcgcggatc ggcgaaaaga gctcgtagcg caaaccgaag ttcagcgtta accgcggcga
     1441 gacgcgccat gcatcctgga tgtaaacaga gtagttctca aagttgagat gccgcgttgg
     1501 aaaggctccc tgcacaaacc ccgacgtggc gctggtggca ttgaacgtcg cgtcagcgct
     1561 ttctacgaac ccacccagaa gcgccagcag gttgttggcc gaagcaagtt gtgtggagct
     1621 gatgccgccg ggaaactgac tcgcaataag actcggcgta cttggaccag tcccaatcga
     1681 caacgtcggg attgttgact gtgaaaatgc aggtggacca aacggagtca gacggaagaa
     1741 ctgcgcctgc ccgccaaatc tcaacgagtg attaccattg gcccaaactg cgttgtcgac
     1801 gattgtgtac tggtgcgagt ctcgaccctg gcgttcaaag gtcgactcgg gactgtcgac
     1861 gagcggcagc gtcaggaaaa agtcggacgc cacatcgttc cgatcgaaga tcggctgact
     1921 aaagaaccat ccaccacgca gatcgtttgt gaaagccgcg gtcggcgaga aacgccacgc
     1981 cgcaacgaac gattgacgat ccgcggattg gaatccaaac ggaatgcgat tgaaaccgcc
     2041 gttgtcgacg tcgggacgaa gattggtctc agtgccgcga tcgatgatga acgagaagcc
     2101 ttgtcgcgag ctcggctcga tgtcgaaacg aaacgtcaac ttatcgcgat cgacgttttg
     2161 ccgacaccgg ccgcgttcaa aacgttgagc tggcgtgtga cgccggctgc gtcgacgtac
     2221 gagaagattc cctggcgcgc ggacggcagt aatatcgttc gcgtaaccga agttgactcg
     2281 cgcaaccgaa aaccttcata cgacccgaag aagaatcctt tgccgtgata aagcgccgga
     2341 ccgccctcgc cgaaacgcgg cagcggcaat ggtccactga atcgcccgcc aaactggttg
     2401 cgattcagaa acggccgctc tactccggtg gcgttgttga aaaatgtatt cgctgcaaac
     2461 tccgaattgc ggttgtagat gaagagtgcg ccatgaaaat cctgcgcgcc gcgaggcgtt
     2521 accagttcaa cctgcgacga gccgtagcct ttctctgcgc cggcgttctg cgtcgtgatc
     2581 gtgaactcgc tcacgtcgtc gacgtgcggg cgatcgggca cgaagtcagt cgcgttcgag
     2641 cggataaagt tgtcctggat gttgattcca tcacgcgtga tgttgg
//
LOCUS       DASWTX010000620         1588 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_31593, whole genome shotgun sequence.
ACCESSION   DASWTX010000620 DASWTX010000000
VERSION     DASWTX010000620.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31593"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..638
                     /locus_tag="VGD38_09485"
     CDS             <1..638
                     /locus_tag="VGD38_09485"
                     /inference="COORDINATES: protein motif:HMM:TIGR01777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HEY0728289.1"
                     /translation="TTLLSETLAQFSQPPSVFISASAIGYYGDRGDEELTEQSGPGKD
                     FLASVCVEWEASTRAAAEKGIRTVLARFGVILDRNGGALAKMLTPFRMGIGGRIGDGR
                     QWMSWIALDDVINALKFLLLDSAVHGPVNIVAPNPVTNAEFTKTLGRVLSRPTFFPVP
                     AFGARLAFGELADALLLSSQKVEPAVLKDRGFAPYWPRLEPALQHLLQDHR"
     gene            635..>1588
                     /locus_tag="VGD38_09490"
     CDS             635..>1588
                     /locus_tag="VGD38_09490"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0728290.1"
                     /translation="MTQIKLILLFVFALFAAAPQSPRADLILHNGVIWTVDAMNPTAQ
                     AVAVKDGKFVAVGADKDVLALRGPQTRVIDLQGRFVVPGFNDNHVHFASAAQFLEFNI
                     MRAATQEEFVARVKDVVARLPKGEWIVGGYWGAYDSWAAGSAGSQKREPFTPDMNLIK
                     DLTKDHPMFIRKFDDSQFAANEAAFKVITTLHLTDPQAPDVEFLKDSQGRLNGHMRGK
                     GVLPLFNPFIPRTFSRERRIQQTKNALFEIRKFGVTNVSDMSDDLQLDIYRELHQKGE
                     LTVRVHFRPGLDRWKVLADKGVRVGAGDEWIRLGALKGHIDG"
BASE COUNT          323 a          459 c          483 g          323 t
ORIGIN      
        1 gaacaaccct cctcagcgaa acgctcgcgc aattttcgca gccgccgtct gttttcattt
       61 ccgcgtccgc gatcggttac tacggcgatc gcggcgatga agagttaacc gagcagagcg
      121 gcccgggaaa ggattttctc gcgtcggtgt gcgtcgagtg ggaagcgtcg acacgggcag
      181 cggccgaaaa gggaatcaga accgtactcg cgcgtttcgg agtcattctc gatcgcaacg
      241 gcggcgcgct cgcgaaaatg ctgacgccgt ttcgcatggg catcggcggc cgtatcggcg
      301 acggccggca gtggatgagc tggatcgcgt tggacgacgt catcaacgcg ctcaagtttc
      361 tgctgcttga ttcggcggtg catggaccag tcaacatcgt cgcccccaat ccggtaacca
      421 acgccgagtt cacaaagaca ctcgggcgcg tgctttcgcg gccgacgttc ttcccggtgc
      481 ctgcattcgg cgcgcgtctc gctttcggcg agctcgccga tgcgcttctg ctttcgagcc
      541 agaaagtcga accggcggtg ctcaaggatc gaggctttgc gccttactgg cccaggctcg
      601 agccagcgtt gcaacacctg cttcaggacc acagatgaca cagataaaat tgatcttgct
      661 tttcgtgttc gcgctgtttg ccgcagcgcc gcaatcgccg cgcgcggacc tgattcttca
      721 caacggcgtc atctggaccg tcgacgcaat gaatccaacc gctcaggcgg tggcggtgaa
      781 agacggaaag ttcgtcgccg tcggcgctga caaagacgtg ctagcgctgc gtggaccaca
      841 aacgcgggtg atcgatctac agggacgttt cgtcgttccc ggtttcaacg acaaccacgt
      901 tcactttgcc tcagcggcgc agttcctcga gttcaacatc atgcgtgctg cgacgcagga
      961 agagtttgtc gcgcgcgtga aggacgtggt cgcgcgtttg ccgaaaggcg aatggatcgt
     1021 cggcgggtat tggggcgcgt acgacagttg ggccgcgggc agtgcgggaa gtcagaaacg
     1081 cgagcccttc acgcccgaca tgaatctgat caaagacctc acgaaagacc atccgatgtt
     1141 cattcggaag tttgacgaca gccagttcgc agcgaatgaa gcggcgttca aggtgatcac
     1201 gacactgcac ctgactgacc cgcaggctcc cgacgtggag ttcttgaagg acagccaggg
     1261 acgcttgaac ggtcacatgc ggggcaaagg cgtgttgccg ttattcaatc cgtttattcc
     1321 gcgcaccttc tcgcgcgagc gccgcattca acagacgaag aatgccctct tcgagatccg
     1381 caagttcggc gtcacaaacg tcagcgatat gtctgacgat ctgcaactcg atatctatcg
     1441 cgagctacat caaaaaggag agctcacggt gcgcgtccat tttcgtcccg gtctcgatcg
     1501 ttggaaggtg ttggcggaca aaggagttcg cgttggtgcc ggagacgagt ggattcgtct
     1561 tggcgcgctc aagggccaca tcgacggt
//
LOCUS       DASWTX010000621         1813 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_95678, whole genome shotgun sequence.
ACCESSION   DASWTX010000621 DASWTX010000000
VERSION     DASWTX010000621.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1813)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1813
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95678"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..687)
                     /locus_tag="VGD38_09495"
     CDS             complement(<1..687)
                     /locus_tag="VGD38_09495"
                     /inference="COORDINATES: protein motif:HMM:TIGR00282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00282 family metallophosphoesterase"
                     /protein_id="HEY0728291.1"
                     /translation="MKVLMIGDVVAKPGRVAVLERIQDLREQHQIDLAIMNAENLAGG
                     FSVTPSLCEELFANGIDVMTSGNHIFDKKEAIEYIRKQPRLVRPANYPPNTPGSGFWT
                     GEVNGAQVAVINLMGRVFMPPSDDPFRIVDEIVGSLPAKATVRLVDMHAEATSEKVAM
                     GWHLDGRVSAVVGTHTHVQTADERILPQGTAYLTDLGMTGSYAGVIGMNKSDVIARFT
                     SVTARRAEHSS"
     gene            complement(759..945)
                     /gene="ssrS"
                     /locus_tag="VGD38_09500"
     ncRNA           complement(759..945)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="VGD38_09500"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(1024..1413)
                     /locus_tag="VGD38_09505"
     CDS             complement(1024..1413)
                     /locus_tag="VGD38_09505"
                     /inference="COORDINATES: protein motif:HMM:NF017016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HEY0728292.1"
                     /translation="MSSGLGRMINKGSMEGSTSSPTIRVEIYNQTYNIRSDGDTEYII
                     QLAEFVDSRMREISSGTLTVDSLKVAILAALHIADELHRLKNMHEQADAQLAARSAEC
                     AEMLDRLLKVRTTLENEQGGAGKLSLG"
     gene            complement(1410..1688)
                     /locus_tag="VGD38_09510"
     CDS             complement(1410..1688)
                     /locus_tag="VGD38_09510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728293.1"
                     /translation="MVGLSGLEKFSHLEDKIYRTIELTKTLRQEKENLEKELALIHRD
                     MGNVLNEKERLETQIEKLLAERETIRMKVEAMLDAIAALDPEMAEELR"
BASE COUNT          362 a          494 c          493 g          464 t
ORIGIN      
        1 gctcgagtgt tccgctcggc gggcagttac cgaagtaaat cgggcaatca cgtctgattt
       61 gttcataccg ataacgccgg cgtaacttcc cgtcattcct aaatccgtta aatacgcagt
      121 gccctgcggc aggatgcgct catcagccgt ctgcacgtgc gtgtgcgtac cgacgacggc
      181 cgaaacacgg ccatcaagat gccaacccat cgcgactttt tccgacgtcg cttcagcgtg
      241 catgtctacg agtcgcaccg tcgccttcgc cggcaacgat ccgacaatct catcgacgat
      301 gcgaaacgga tcatcggacg gcggcatgaa cacgcggccc atcaaattaa tcactgccac
      361 ctgggcgccg ttgacttccc ccgtccaaaa gccactgccg ggcgtgttcg gcggatagtt
      421 tgcgggacgg acgagccgcg gctgtttgcg gatgtactcg atggcctctt tcttgtcgaa
      481 gatgtgattg ccggaggtca tcacgtcgat gccgttggca aatagctctt cgcaaagcga
      541 cggcgtaact gagaaaccgc ccgcgaggtt ctcggcgttc atgatcgcaa gatcgatctg
      601 gtgttgttca cgcagatcct ggatgcgctc gagcaccgcc acgcgcccgg gcttcgcaac
      661 cacatctccg atcattagaa ccttcatcgc attaattgga ggctaagaca aaaaagaccg
      721 cgaatctcgg tcgagattgg cggtttggtt tggcgggagg gagatccgca tctgtcgttc
      781 cgaagccgta attgaacctg caatgacagg tgggtgacct cttaatgacg tagcctctgg
      841 cagttcttaa cgatgaagaa atgcactggc tagacgacct cggtctcccg aatcaacggc
      901 gttggctcaa tcatcgtaac tcggtgacga tcaccgcaga acgtttccct ccgccgtgcg
      961 ggatattagc ataacgaaag gacctttgtc cttcgcctca ccctgctttt tttgcgtgtt
     1021 tggttacccg agggagagct tgcctgcgcc gccctgctcg ttttcgagcg tggttcgcac
     1081 cttcaagaga cggtcgagca tttcggcgca ttcggcgctc cgagctgcca gttgcgcgtc
     1141 ggcctgttcg tgcatgttct tgaggcgatg aagttcgtcc gcgatgtgca gcgcggcgag
     1201 aatggcgact ttcaaagagt cgacggtgag agttcccgat gagatttctc tcatgcggct
     1261 gtcgacgaat tccgcgagtt gaatgatgta ttcggtgtcg ccgtcggaac ggatgttgta
     1321 agtctggttg taaatctcaa cgcggatcgt cggactgctg gtactgcctt ccatactgcc
     1381 tttattgatc atgcggccta gtccggaact catctgagtt cctctgccat ttccggatcg
     1441 agagcagcga tggcgtcgag catggcttcg actttcatgc ggatcgtctc gcgttcggcg
     1501 agcagcttct cgatctgagt ttcgagtcgc tctttttcgt taagcacatt gcccatatcg
     1561 cgatgaatga gcgcgagttc tttttccagg ttctcttttt cctgacgcag cgtcttcgtg
     1621 agttcgatgg ttcgatagat cttatcttcg agatgcgaaa acttttcgag gcctgataga
     1681 ccaaccatca atttgtctcc ctgggtttgg ctaaagtgaa atgcgtacgc gattatccga
     1741 cttcaggctt gcgagtgcaa gactcattct gcaattcggc aagatttatt tctgacgttt
     1801 atgtttctaa cgt
//
LOCUS       DASWTX010000622         1573 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_117605, whole genome shotgun sequence.
ACCESSION   DASWTX010000622 DASWTX010000000
VERSION     DASWTX010000622.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117605"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..218)
                     /locus_tag="VGD38_09515"
     CDS             complement(<1..218)
                     /locus_tag="VGD38_09515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728294.1"
                     /translation="MRKVADLNQLDQVKFPVGSFSLTADGSLCKSFGLCGNAEDVRNF
                     QPIEVSGLHHVLMPFEFAKRRRRSLISA"
     gene            519..>1573
                     /locus_tag="VGD38_09520"
     CDS             519..>1573
                     /locus_tag="VGD38_09520"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY0728295.1"
                     /translation="MTVIVQHVPSATNGGLLGGLLNTVGGLLDTVGGVLVSVLSLLNI
                     TIVEIRANDVEVLAADPSVAYISLDNPVRSSGHLTNTTGTQQIRTQKTLLGSTTLDGS
                     GVTIAIIDSGIDSKHKSFATSGKIKFSKDFTGENRTDDPWGHGTHVASIAAGDGAPTA
                     GAYEGIAPGANLVNLRVLNSQGIGRVSGVLAALDWLMANKNSYGVRVVNMSLGTLAIN
                     SYEDDPICNAVRKLVNAGVVVVAAAGNMGRDANGRKVYGAIHCPGNEPSAITVGASNS
                     FGTDARHEDAVTSYSSRGPARSFSVDSYGLVHYDNIIKPDLVAPGNKIIAAEAAGNNL
                     LKMYPELATNKYSTTNM"
BASE COUNT          372 a          497 c          403 g          301 t
ORIGIN      
        1 tgggctgaaa ttagcgaacg ccttcggcgt ttcgcaaact caaacggcat cagcacgtgg
       61 tgaagacccg aaacttcaat gggctgaaaa ttgcgaacgt cttcagcgtt tccgcaaaga
      121 ccgaaactct tgcagagtga cccgtcagcc gtcaggctga atgatccgac gggaaatttt
      181 acctggtcca actggtttag atccgccact ttcctcaaca gaatcgaccc atttgccctc
      241 acaaccacac gtggcacggg gctagcacta ggaaggcgct cgcagtttga gcgcaagtaa
      301 attaacgaca tcgagccccc tggagaaact gaatgtctcg cccccaagtc tttaaacgtc
      361 ttgtgacact cgcggtgctg tgttcactct gctcagcact ctttgtctcc acgaatacga
      421 aagtccaggc tgcaactagc cccacgccca gcctcgctag cagcaagatc tcgcccgatc
      481 tacgccagct tatcctctca ggccaaggcg ataagcgcgt gacggtgatc gtgcagcatg
      541 ttccttcagc gacaaacggc ggactgctcg gcggtttact aaacaccgtg gggggattgc
      601 tcgacacagt cggcggagtg ctggtcagcg tactgtcgct gctgaacatc accatcgtcg
      661 agatccgcgc aaacgacgtc gaggtgctcg ccgccgatcc cagcgtcgct tacatttcac
      721 tcgacaatcc cgtacgcagt tcgggccatc tgacaaacac gaccggcaca caacagattc
      781 gcacacagaa aacgcttctc ggttcaacaa ccctcgacgg ctccggcgtc actatcgcaa
      841 tcatcgattc aggcatcgac agcaaacaca aatcattcgc cacttccggc aagatcaaat
      901 tcagcaaaga cttcaccggc gagaatcgca ccgacgatcc gtggggtcac ggaacacacg
      961 tcgcttcgat cgccgcaggc gacggcgccc cgaccgccgg cgcttatgaa ggtatcgctc
     1021 ccggcgcgaa tctcgtcaat ctgcgcgtac tcaactcgca gggtatcggc cgcgtgtcag
     1081 gcgtgttggc cgcgctcgat tggctgatgg ccaacaagaa ctcctacggc gtgcgcgtcg
     1141 tcaacatgag tctcggcacg ctcgcgatca actcttacga agacgatccg atctgcaacg
     1201 ccgtgcgcaa gcttgttaac gccggtgttg tagttgtcgc tgctgccgga aacatgggca
     1261 gagacgcgaa cggccgcaag gtttacggcg cgattcattg ccccggcaac gaaccttccg
     1321 cgatcacggt cggcgccagc aacagtttcg gcaccgacgc tcgtcacgaa gatgcagtca
     1381 cgagctacag ctcgcgtggt ccagcgcgca gtttctcggt cgattcatac ggcctcgttc
     1441 actacgacaa catcatcaaa cccgatctcg tcgcacccgg aaacaagatc atcgcggcgg
     1501 aagcagccgg caacaacctg ctcaagatgt atcccgagct cgcgaccaac aagtattcga
     1561 cgacgaacat gaa
//
LOCUS       DASWTX010000623         4806 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_292890, whole genome shotgun sequence.
ACCESSION   DASWTX010000623 DASWTX010000000
VERSION     DASWTX010000623.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4806
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292890"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..587)
                     /locus_tag="VGD38_09525"
     CDS             complement(<1..587)
                     /locus_tag="VGD38_09525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728296.1"
                     /translation="MRIQSLRHWQLRASLLAFLLVVAPFSTIISRAQGPNLDPTAVAD
                     TDPTLPLSQILRLEKIDVPGGAELITVHAKLSGLESDKNDKWIPLVSILRDTLGDNIP
                     ENNRLRYVWPLTYTRPTMKQRLAAAIPFFYTRVGNKEKTTKTPPPALDLAAPESDVWN
                     KMFWVALQGILLDPYSTPIKASTASYHRNASDYRKS"
     gene            complement(879..2480)
                     /locus_tag="VGD38_09530"
     CDS             complement(879..2480)
                     /locus_tag="VGD38_09530"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEY0728297.1"
                     /translation="MATGLVIHISSGEDRHTEILTDDDIRIGTTDAANLRLRASSLPR
                     EAANAVLLELTRSNGNYCVTDFDERTAVTLTGAPVQAGAEIRDGDEVRFDQSELILHF
                     YPVRALPAVVPGAAAARETHVAPFIEAAAIESAATARRDDAKVFLREFTRELVREINP
                     STKLITLAIALALVGGVLYLGFAMYKELQRSRRLIDDQRAQLGQMRDQVLKTNSQISD
                     LGRSTKELQDSLSLAVKLRSEYGRGVCLIAGSFYFVETGTGRPLRYAESQLNDSGSAV
                     QSGNAFESLTPEGNAAIAEYEFVGSGFYVGQGFVITNRHIAQPWIADDRAQSISGGLK
                     AQPRLKKLIAYFPDYTQAIPLKFKNASQRDDLAVCELDLPQIPETLPILPLETDADAV
                     AVGKTVVMMGYPSGPDRLLALLDDAESRGIQQRYGTPMAQLAYLAETKRIQPLTTQGS
                     ITDLDVRRIVYDARTAEGGSGAPLFGPSGRVIGVNFAVFTENQASNFAVPSRFAVSLL
                     ERTGWTGPPKDNKDSEASQSSSYAP"
     gene            2555..2953
                     /locus_tag="VGD38_09535"
     CDS             2555..2953
                     /locus_tag="VGD38_09535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S) ferredoxin domain-containing protein"
                     /protein_id="HEY0728298.1"
                     /translation="MAEIKFIDDCERLMELAPSASARIQRHVFVCTGKSCSAVDSAAV
                     LDAFGSELKSRGLQYGKVSKGCSPEGTVVLTECGSVGFCAIGAAVMIYPDGVWYAQVR
                     AKDVAEIVEEHLVNGRVVQRLALLKIPTPE"
     gene            complement(2940..4469)
                     /gene="gcvPB"
                     /locus_tag="VGD38_09540"
     CDS             complement(2940..4469)
                     /gene="gcvPB"
                     /locus_tag="VGD38_09540"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF003346.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006546 - glycine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPB"
                     /protein_id="HEY0728299.1"
                     /translation="MTSGITKVTTHISPNEQLIFERSQSGRIGYRLPELDVEESSVDS
                     LIPKEFQRDDDLEGMPEVSEVDVVRHFIRMSTWNYSIDIGMYPLGSCTMKYNSRLNER
                     VARIAGFANLHPLADEADSQGALQVIYELQECLAEITGLPGVSLQPAAGAHGEMTGIM
                     IIRAFLDARHGAAAAGRRTMLIPDSAHGTNPASAHLSGFSVKTIRSTAEGLTDLDHLR
                     ELCAHGDVAGLMLTNPNTLGLFERNIKQICDIVHEAGGLVYMDGANMNALVGVARPGD
                     MGVDVIHLNLHKTFSTPHGGGGPGCGPCCCTKELEPFLPVPRIVKTDDTYRLDHNQPK
                     SIGRVKAFFGNYGMMLRALAYTLTHGHDGLREATEAAVLNARYIADGLTSDYDKPFDS
                     PPMHEVVFTDKRQSRKGVHTLDIAKRLIDYGFHPMTIYFPLIVQGAMLIEPTESVGRQ
                     ELDQFIQAMRSIAHEAVENPELVLNAPHDTRIGRLDEAAAARKPVLRWKPTEQAEATQ
                     A"
     gene            complement(4466..>4806)
                     /locus_tag="VGD38_09545"
     CDS             complement(4466..>4806)
                     /locus_tag="VGD38_09545"
                     /inference="COORDINATES: protein motif:HMM:NF014408.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728300.1"
                     /translation="LAATVYMEAMGKRGVQEAAHQCLQKAAYTAKRIAGIKGFSLPFT
                     GPYFNEFVVRGPRSAVELLSRLAKEKEIEGGIALSRFVPDRDQDFLICVTETNTREQI
                     DSLVAALSEL"
BASE COUNT          961 a         1292 c         1456 g         1097 t
ORIGIN      
        1 gactttcgat aatcgctcgc attgcgatga tacgaagcag tcgacgcttt gatcggcgtg
       61 ctgtatggat cgagcagaat accctgcagc gcgacccaga acatcttgtt ccaaacgtcg
      121 ctttcgggcg cagcgagatc cagcgcgggc ggcggagtct tcgtagtttt ttctttgtta
      181 ccgacgcgcg tatagaagaa gggaatcgcg gccgcgagac gttgcttcat cgtcgggcgc
      241 gtgtatgtca acggccatac atagcgcaga cgattgtttt cgggaatgtt atcgccgaga
      301 gtgtcgcgaa gaatggacac cagcgggatc cacttgtcgt ttttatcgga ctcgagaccc
      361 gagagcttcg cgtggaccgt gatcaattcc gcgccgccgg gaacgtcaat cttttccaga
      421 cgcagaatct gcgagagcgg cagagtcgga tcggtgtccg caaccgcagt tggatccagg
      481 ttcggcccct gagccctgct gatgattgtg gaaaatggcg cgacaacgag cagaaatgcc
      541 agtaagctcg ccctcagttg ccagtgtcta aggctttgga ttctcatcct ttgtcatcga
      601 acactaaaca aaatctggca gttggggaat ttgtgctgca ttcctgggga cgtcaggact
      661 cacagacact caaataacct cgccctcaca atgccttgtg caaacctcat gcccctgagg
      721 gcgttaacta aatatacatt agtgtaactg ctcttgaatt cattttctgc tgtcaaatgt
      781 gacaggttgt tcattgcaac agtccgggat cagatgcccg cgccatgtgg cggcgttgtt
      841 tacagacgaa tgtaatcaca gatttgttaa cgcgaaggtt aaggcgcgta actcgacgat
      901 tggctggcct cgctgtcctt gttgtccttc ggcggcccgg tccaaccggt gcgttcgaga
      961 aggctgactg cgaagcggct cggcaccgcg aagtttgagg cctggttctc agtgaagact
     1021 gcaaagttta cgccgatgac gcgacccgaa ggaccaaaca gcggtgcgcc tgaaccgccc
     1081 tccgcggttc gtgcgtcgta aacgattctt cgcacgtcaa gatcggtgat gctaccttgc
     1141 gtggtcaacg gttgaatacg tttggtctcg gcgagatatg cgagctgtgc catcggtgtt
     1201 ccgtatcgtt gttgaatacc tcgcgactcg gcgtcgtcga gtaatgcgag cagacgatcc
     1261 ggacccgaag gataacccat catcacgacc gttttgccta cggcaaccgc gtccgcgtcg
     1321 gtttccagcg gcagtatcgg caacgtctca ggaatctggg gaagatcgag ttcgcaaact
     1381 gcgaggtcgt ctcgttgcga ggcgttcttg aacttgagtg gaatggcctg cgtgtaatcc
     1441 gggaaatagg caatcagttt tttgagacga ggctgtgctt tgaggccgcc gctgatactc
     1501 tgcgcgcgat cgtcggcgat ccacggctgc gcgatgtggc ggttcgtgat tacaaaaccc
     1561 tggcccacgt agaagccgct gccgacaaac tcgtactccg caatcgcggc gttgccttca
     1621 ggtgttaacg attcgaatgc gttgccgctt tgaacggcgc tgccgctgtc gttcaactgc
     1681 gattcggcgt aacgaagggg acgtccggtt cccgtctcga cgaaatagaa cgaaccggca
     1741 atcaagcaaa caccgcggcc gtattcgctg cgtaacttca ccgccagcga gagactgtcc
     1801 tgaagctctt tagttgagcg gccgagatcg ctgatctgcg agtttgtttt caacacctga
     1861 tcgcgcatct ggccgagttg tgcgcgctga tcgtcgatca ggcggcggct gcgctgaagc
     1921 tctttgtaca tcgcgaagcc gagataaagg acgccgccga cgagggcgag tgcgatagcg
     1981 agcgtgatca gcttggtgct cggattgatt tcgcgtacca gctcgcgcgt gaattcgcgc
     2041 aggaagactt tggcgtcgtc gcgtctcgcg gttgcggctg actcgatcgc cgcggcttcg
     2101 atgaacggtg cgacgtgtgt ttcgcgcgcc gctgctgcgc cgggaacgac tgcgggcagc
     2161 gctcgcaccg ggtagaagtg caggattagt tccgactggt cgaagcgcac ctcatctccg
     2221 tcgcggatct ccgcgccggc ctggacgggc gcgccggtca acgtcaccgc cgttctttca
     2281 tcaaaatcgg taacacagta gttgccgttc gagcgcgtca gttcgagcaa aacggcgttc
     2341 gccgcttcac gaggcagact tgaagcgcgc agccgaaggt tcgcggcgtc agtggtgccg
     2401 atccggatgt cgtcgtcggt gaggatttcg gtatgccggt cttcgcccga ggagatgtgg
     2461 ataaccaggc cagttgccat aaattgctaa aagcgccaac ctctcgacgc gttattctac
     2521 aatgagttag catgaaatcg aaacgaggtt ttgtttggcg gaaataaagt ttattgacga
     2581 ctgtgagcga ttgatggaat tggcgccgag tgcgtcggcg cgaattcagc gtcacgtttt
     2641 tgtttgcacg ggtaaatcgt gttcggcggt tgacagcgcg gcggtgctcg atgcgttcgg
     2701 cagcgagttg aagtcgcgtg gtttgcagta tggaaaagtg tcgaagggtt gcagtccgga
     2761 agggactgta gtgttaaccg agtgtggttc ggttggcttt tgtgccattg gcgcggcggt
     2821 gatgatttat cccgacggtg tttggtacgc gcaagttcgc gcgaaggacg tcgccgagat
     2881 tgtcgaagag catctcgtca acgggcgcgt ggtccaacga ttggcgctgc tgaagatacc
     2941 tacgcctgag tagcctcggc ttgttctgtt ggcttccaac gtaagactgg tttgcgcgcg
     3001 gcggcggctt cgtcgagacg gccgatacgc gtatcgtgcg gtgcgttcag gaccaactcc
     3061 ggattttcca ctgcctcatg cgcaatcgat ctcatcgctt ggatgaattg atcgagctcc
     3121 tgccgtccga ctgattctgt cggttcaatc aacatcgcgc cctgcacgat caacgggaag
     3181 tagatagtca tcgggtgaaa tccgtaatcg atcaaacgct tcgcaatgtc gagcgtgtgg
     3241 acgcccttgc gtgactgccg cttgtcagtg aaaacgacct cgtgcatcgg cgggctgtcg
     3301 aatggcttgt cgtaatcgct ggttagacca tcggcgatgt agcgcgcgtt gagcacggcg
     3361 gcttcagttg cttcacgcag accgtcgtgg ccgtgcgtca gcgtgtaagc gagtgcgcgc
     3421 aacatcatgc cgtagttacc gaagaacgct ttcacacgtc cgatcgactt tggttggttg
     3481 tgatcgagac gatatgtgtc gtccgtttta acgatgcgcg gcacgggcag aaacggttcg
     3541 agctctttcg tgcagcagca tggcccacag cctggcccac caccaccgtg cggcgtcgaa
     3601 aacgtcttgt gcaggttgag gtggatcacg tccacgccca tatcgcccgg acgcgcgacg
     3661 ccgacgaggg cgttcatgtt cgcgccgtcc atgtagacga gtccgcccgc ttcgtgaacg
     3721 atgtcgcaga tctgtttgat gttgcgttcg aacaagccga gcgtgttcgg gttcgtgagc
     3781 atcaggccgg cgacgtcgcc gtgagcgcac agttcgcgca ggtgatccag atcggtcaga
     3841 ccttcagccg ttgacctgat cgtcttaacc gagaaacctg acaaatgagc cgaagcagga
     3901 ttggtgccgt gtgcggagtc gggaatgagc atcgtgcgcc tgccggcagc ggcggcgccg
     3961 tggcgcgcgt cgagaaacgc gcgaatgatc atgatgcccg tcatctcacc gtgcgcgcct
     4021 gcggcgggtt gcagtgaaac acccggcaag ccggtgatct cggcgagaca ttcctggagt
     4081 tcgtaaatga cttgcagcgc gccctgactg tctgcttcgt cggccagcgg atgcaggttt
     4141 gcgaagcccg cgatgcgcgc gacgcgctcg ttcaggcgcg agttgtactt catcgtgcac
     4201 gagccgagcg gatacatgcc gatgtcgatc gaatagttcc acgtcgacat gcgaatgaag
     4261 tgacgtacca cgtctacttc gctgacttcc ggcatgcctt cgagatcgtc gtcgcgctga
     4321 aactctttcg gaatcaaact gtcgacggat gactcttcaa cgtcgagttc aggcaggcga
     4381 taaccgatac gccctgactg tgaacgctcg aagatgagtt gctcgttggg actgatgtga
     4441 gtggtgactt tagtgatacc gctggtcata gttcgcttaa agccgcaacg agcgaatcga
     4501 tctgctcgcg ggtgtttgtc tcagtgacac agatcaaaaa atcctggtcc ctatccggaa
     4561 caaagcggga caatgcaatc ccgccttcaa tctctttctc tttagccaaa cgtgaaagca
     4621 actcgactgc gctgcgcggt ccgcgcacga caaactcgtt gaaatacggg ccggtgaagg
     4681 gaagtgaaaa gcctttgatc ccggcgatgc gttttgccgt gtacgcggct ttttgcagac
     4741 actggtgagc cgcttcctga acgccgcgtt tgcccattgc ttccatgtag accgttgccg
     4801 cgagcg
//
LOCUS       DASWTX010000624         1898 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_336489, whole genome shotgun sequence.
ACCESSION   DASWTX010000624 DASWTX010000000
VERSION     DASWTX010000624.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1898)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1898)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1898
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336489"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..283
                     /locus_tag="VGD38_09550"
     CDS             <1..283
                     /locus_tag="VGD38_09550"
                     /inference="COORDINATES: protein motif:HMM:NF017945.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="urate hydroxylase PuuD"
                     /protein_id="HEY0728301.1"
                     /translation="IFGTIMAANVWMHILPSQRKMIAALNEGRKPDEQLSARAKLRSK
                     QNTFMAVPVVFLMISNHFPGVTYGDRYNWIIVSVLVLAGWIAAKFIRRA"
     gene            295..1860
                     /locus_tag="VGD38_09555"
     CDS             295..1860
                     /locus_tag="VGD38_09555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728302.1"
                     /translation="MRSETRLLDQLDKLKTSFGPQDAQRVQSLLERLAAKRFSDPEEL
                     IRLHELLLFVRAYPHNAEIARLAEEQLRSFAERVSQARERDVELSSLEHPSMSGIAGT
                     PLTDTFSFFIVRWLVERYPSQIAIYWDWFENENRLAQTWPRFMPLLEEDGNVEANVPY
                     RKWLAAARGRQSEISWLVQQFDQLTRPDKEKAELYDSQQIYVQWTPRFRSTRTGLRAP
                     ARSMFYHSEPFIQRRDVNLRDELNAPPPAFTKLSQRDGERALDLALEASTIRYRELYG
                     FTHADPAHVYQVDLGRGVQLHLFGLPPEKRLPLRACHATMIYKNGVPIGYFEGLSLFE
                     RMEGGFNLYYTFRDGETAWLYARILNAMRHFAGVTAFSIEPYQIGYENEEGIESGAFW
                     FYRKLGFRSTERDALLLTEKEEQKIAKRRGYRTSARTLRKLAESPMIFELDEKRVGDW
                     DRFQVRKIGLRMQGRKFESLASLIREARWTGDENRMLERIVRAKGAAEEITYLKLMQR
                     HERLRAEIIRLGS"
BASE COUNT          393 a          479 c          596 g          430 t
ORIGIN      
        1 gatcttcggc acgatcatgg cggcgaatgt gtggatgcac atcctgccgt cgcaacgaaa
       61 gatgatcgcg gcgttgaacg aagggcgcaa acctgacgag cagctttcgg cgcgcgcgaa
      121 gttgcggtcc aaacagaaca cgttcatggc ggtgccggtt gtgttcctga tgatcagcaa
      181 tcactttccc ggcgtgacgt acggcgatcg ttacaactgg atcattgtct cggtgctggt
      241 gctcgccggt tggattgcgg cgaagtttat tcgccgggcg taagtttaga atttgtgagg
      301 tctgaaaccc gcctgctcga tcaactcgac aaactcaaaa ccagttttgg accacaagac
      361 gcgcagcgcg tgcaatcgct gctcgagcgc ctggcagcga agcggtttag cgatcccgag
      421 gagttgatcc gcctgcacga gttgctgctg tttgtgcgtg cgtatcctca caatgccgag
      481 attgcgcggc ttgcggaaga gcaactgcgc tcgtttgcgg agagagtttc gcaggcgcgt
      541 gagcgtgatg tggaactgtc gagcctcgaa catccgagca tgtcgggcat cgccggcact
      601 ccgttgacgg atacgtttag cttcttcatc gttcgctggc tggtcgaacg ttatccctcg
      661 cagatcgcaa tctattggga ttggtttgag aacgaaaatc gattggccca aacgtggccg
      721 cgcttcatgc cgctgttgga agaagacggg aacgtcgaag cgaatgttcc atatcggaag
      781 tggttggctg ctgcgcgtgg ccggcaatcg gagatctcgt ggttggtcca acagttcgat
      841 caactcactc ggcccgacaa agaaaaagcc gagctttacg actcgcaaca gatctacgtg
      901 cagtggacgc cgcgctttcg ttcgacgcga accggcctgc gtgcgccagc tcgcagcatg
      961 ttctatcaca gcgagccttt cattcagcgc cgcgacgtta atctgcgcga cgagttgaat
     1021 gcgccaccgc ccgcgttcac gaagttatct caacgcgatg gcgaacgggc gttggacttg
     1081 gcgcttgaag cgtcgacgat tcgctatcgt gagctttacg gttttacgca cgccgatccg
     1141 gcgcacgtct atcaagtcga cctgggccgc ggcgttcaac tgcatctctt cggtttgcca
     1201 cccgagaagc gcctgccgtt gcgcgcgtgc cacgccacga tgatctacaa gaacggcgtg
     1261 ccgatcggtt acttcgaagg gctctcgttg tttgaacgaa tggaaggcgg gttcaatctt
     1321 tactacacgt ttcgcgacgg cgagactgcg tggttgtatg cgcgaatact aaatgcgatg
     1381 cgccacttcg cgggcgtcac ggcgttttcg atcgagccgt atcagatcgg ttacgagaac
     1441 gaagaaggaa tcgagtcggg cgcgttctgg ttctatcgca agctcggctt tcgttcgacg
     1501 gagcgtgacg ctttgcttct gacggagaaa gaagaacaga agatcgcgaa acgaagaggt
     1561 tatcgcacgt cggcgcgcac gctgcggaag ctggctgaga gtccgatgat ttttgagctc
     1621 gacgagaagc gagtaggcga ttgggatcgg tttcaggtgc ggaagattgg actcaggatg
     1681 caggggcgca agtttgaatc gttggcgtct ttgattcgtg aggcccgttg gaccggggat
     1741 gaaaaccgga tgttagagcg gatcgttcgg gcgaagggcg cggctgaaga gataacgtat
     1801 ttgaagttga tgcagcggca tgaacggctg cgtgcggaga ttatcaggct cggcagttag
     1861 cgatttggtt ctcgaggatc ttggcttctg aaaagttt
//
LOCUS       DASWTX010000625         3147 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_245896, whole genome shotgun sequence.
ACCESSION   DASWTX010000625 DASWTX010000000
VERSION     DASWTX010000625.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3147
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245896"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            205..468
                     /locus_tag="VGD38_09560"
     CDS             205..468
                     /locus_tag="VGD38_09560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728303.1"
                     /translation="MNNQTVPICGEHKVPKEWKATAFVYDEDGVSIEVPNVYAWVCPI
                     DGEPSFTPDTTDELIETVRDLIKPAKRARERRSMPTEYIVRVA"
     gene            complement(501..1547)
                     /locus_tag="VGD38_09565"
     CDS             complement(501..1547)
                     /locus_tag="VGD38_09565"
                     /inference="COORDINATES: protein motif:HMM:NF013543.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HEY0728304.1"
                     /translation="MTATLAFVIILVFLALVFDYINGFHDAANSIATVVSTRVLSPGM
                     AVVWAAFFNFIAFAVFGTRVAKSIGDGVRMDVIEPELRLYVLLAALLGAIIWNLITWY
                     LGLPTSSSHAVLGGYAGAGIAAHGGVSGLLNTEVWLRTLKFIVLSPMIGMFLGFSMMV
                     LVFWVFRRASATRVDKIFRRGQLFSAAAFSLGHGGNDAQKTMGIITAVLTAGGVWGMT
                     YGPDGSLPAIPTTVVLAAHAAIALGTLSGGWRIVHTMGSRITKLKPVGGFCAETAAAL
                     TLAYVTVTGTPVSTTHTITGSIVGVGATRRLSAVKWGVAGRIVWAWILTIPAAAFVAA
                     VSFWIVSTIHHWAS"
     gene            complement(1577..2200)
                     /locus_tag="VGD38_09570"
     CDS             complement(1577..2200)
                     /locus_tag="VGD38_09570"
                     /inference="COORDINATES: protein motif:HMM:NF013982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 family protein"
                     /protein_id="HEY0728305.1"
                     /translation="MGLISLLPREDQYFDLFTQMTLYISAAARELKEMLADKNHAYDE
                     YAKRIKGLEHACDELTHNISTRLNKSFITPFDREDIYMMSTALDDIVDLIDDAARAII
                     IFDVKEITDYARDFADVIERMAEQLKEIVSTLQRPKNVTQRLVEIHRLENEGDDLYHA
                     AIADLFHDPPDALTVVKWKEVYEKLEAAVDRCENVANIIESVIIKHT"
     gene            2307..>3147
                     /locus_tag="VGD38_09575"
     CDS             2307..>3147
                     /locus_tag="VGD38_09575"
                     /inference="COORDINATES: protein motif:HMM:TIGR00393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HEY0728306.1"
                     /translation="MTKTHLSEVQNLLRIESDAIAQTATRLDPSAVERVVDLLASCKG
                     KVVILGVGKSGIIGQKIAATMTSAGTAALYLHPSDALHGGLGIVQTNDVVIVLSNSGE
                     TDEIVAMLPYLKNRQVAIGAIVGNLNSTLARRADVVLDASVDKEACPLNLAPTTSTTV
                     ALAIGDALAMTVMKVKGLTSDDFAVNHPAGRLGKRLTLRVGDLMHKDGENPTIAVGSS
                     WVAVVRAISKGGLGAVCVVDDAGRLAGIITDGDLRRAIEQTSHESLAKLTCDDFMTSK
                     PTVA"
BASE COUNT          724 a          895 c          914 g          614 t
ORIGIN      
        1 tggatgcttt gatcgtcgca atcgctgaac gactgaatat caatcgcttg ttgacgctcg
       61 accgccgaga cttccaattg atccgtccga agcattgcac cagttttgaa cttctgccgt
      121 aacggcctgc ttgaggagga aacgtaaaac aagcaagaat gggagagtcc cccgtttcgc
      181 cgacgcaaac aataacgaac acttatgaac aaccaaactg ttccaatttg cggcgagcac
      241 aaggttccaa aagaatggaa agctactgct tttgtttatg acgaggacgg cgtgtcgatc
      301 gaagtgccga acgtctatgc gtgggtctgc cccattgatg gcgaaccctc atttactcct
      361 gacacaacag atgaattgat cgaaactgtt cgcgacctta tcaaacctgc caagcgcgcc
      421 cgcgaacgcc gctccatgcc aaccgagtac attgttcgcg tcgcctagcg cgctgtcgag
      481 aaaactcaac gttaatccta ttaactcgcc cagtggtgaa tcgtggacac gatccagaag
      541 gataccgcgg cgacgaaggc ggcggcgggg attgtgagga tccaggccca gacgatgcgg
      601 ccggcgacgc cccattttac tgctgagaga cggcgtgtgg cgcccacgcc cacgatcgag
      661 ccggtgattg tgtgggtggt tgaaacgggt gtgcccgtga cggtgacgta ggccagcgtt
      721 aaggcggcgg cggtctcggc gcagaagccg ccgaccggtt tcagtttcgt gatgcggctg
      781 cccatcgtgt gcacgatgcg ccatccgccc gacagtgttc ccaacgcaat cgcagcgtgc
      841 gcggcgagta cgaccgtggt tggaatcgcg ggcaatgagc cgtcgggacc atacgtcatt
      901 ccccaaacac cacccgccgt cagcaccgcg gtgatgatgc ccatcgtctt ttgcgcgtcg
      961 ttgccgccgt ggcccaacga aaacgcagcc gccgaaaaga gctgcccgcg cctgaagatc
     1021 ttgtcgactc gcgtcgccga cgcacgccga aaaacccaaa acaccaacac catcatcgag
     1081 aacccgagaa acattccaat catcggcgat aacacgatga acttcagcgt gcgcagccaa
     1141 acctcagtat tcaacagacc actaacaccg ccatgcgccg caatacccgc gccggcgtaa
     1201 ccacccaaca ccgcgtgcga gctcgacgtc ggcaagccga gataccacgt gatcaggttc
     1261 cagatgatcg ccccgagcaa ggcagccagt aagacataca agcgtagctc aggctcaata
     1321 acgtccatcc gcacgccgtc gccgatcgac ttcgccacgc gcgtgccaaa caccgcaaag
     1381 gcgatgaagt tgaagaacgc cgcccacacc accgccatac ccggcgacag cacgcgcgta
     1441 gacactacgg tcgcgatcga attcgcagcg tcgtgaaatc cgttgatgta atcaaaaacg
     1501 agtgcgagaa aaacgaggat gatgacgaag gccagggttg cggtcatagt gagtggggag
     1561 ctttagaacc catcaactac gtgtgtttga taattacact ctcaatgatg ttggcgacgt
     1621 tctcacagcg atcgaccgcc gcttcgagct tctcgtaaac ttctttccac ttcaccaccg
     1681 tcaacgcgtc cggcggatcg tgaaacaggt cggcaatcgc ggcgtggtaa agatcgtcgc
     1741 cttcgttctc gagacgatga atctccacca gccgctgcgt cacgttcttc ggccgctgca
     1801 aggtcgaaac gatctctttg agctgttccg ccatgcgctc gatcacgtcc gcgaagtcgc
     1861 gcgcgtaatc ggtgatttcc ttgacgtcaa aaataatgat cgcgcgcgcc gcatcgtcga
     1921 tcaggtcgac aatgtcgtcg agcgccgtcg acatcatgta aatgtcttcg cgatcgaaag
     1981 gcgtgatgaa cgatttgttc agccgtgtcg agatgttgtg agtcagttcg tcgcaagcgt
     2041 gctcgagccc cttgatccgt ttcgcatact cgtcgtaagc gtggttcttg tcggcgagca
     2101 tctccttcag ttcgcgcgcg gcggcggaga tgtagagcgt catctgcgtg aacagatcaa
     2161 aatactggtc ttccctcgga agcagactga ttaagcccat tcggtcaccg cgtttgtctg
     2221 aatttcgtct gaacgaagcc gggactataa ccgaccagca ggcgacttgc caaatttgag
     2281 ccgagccggt atatcaaagg ccaacaatga cgaagaccca cctgtcagaa gttcagaatc
     2341 tgctgcgaat cgaatcagac gcaattgccc agacggccac ccggctcgat ccgtcggcgg
     2401 ttgagcgcgt cgtggatctg ctcgcgtcgt gcaagggcaa ggtcgtgatt ctgggggttg
     2461 ggaagtcggg catcatcggg caaaagatcg cggcgacgat gacgagcgcg ggcacggccg
     2521 cgttgtacct gcatccgtct gacgcgttac acggcgggct cggcatcgtg caaacgaacg
     2581 acgtggtcat tgttttgagc aacagcgggg agacggacga gatcgtcgcg atgctgccgt
     2641 acttgaaaaa ccgtcaggtt gcgatcgggg cgattgtcgg aaatctcaac tcaacgctcg
     2701 cgcggcgcgc tgatgttgtg ctcgatgcgt cggttgataa agaggcgtgc ccgttgaacc
     2761 tggcgccgac gacgagcacc acggttgcgc tcgcgatcgg cgacgcgctc gcgatgacgg
     2821 tgatgaaagt aaaaggtttg acgtcagacg attttgccgt gaatcatccg gccggacgcc
     2881 tcgggaagag attgaccctg cgagtgggag atctaatgca taaggatggt gagaatccga
     2941 cgatagcggt gggttcgtcg tgggtggcag tcgtgcgcgc gatcagcaag ggcggactgg
     3001 gagctgtgtg tgttgttgac gacgcaggac ggctcgcggg aatcatcacc gacggcgatc
     3061 tgcgtcgcgc aatcgaacag acgagtcacg agtcgctggc aaagttgacg tgcgatgact
     3121 tcatgacgag caagccgacg gtagcga
//
LOCUS       DASWTX010000626         2933 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_358948, whole genome shotgun sequence.
ACCESSION   DASWTX010000626 DASWTX010000000
VERSION     DASWTX010000626.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2933
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_358948"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1419)
                     /locus_tag="VGD38_09580"
     CDS             complement(<1..1419)
                     /locus_tag="VGD38_09580"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0728307.1"
                     /translation="MDILIQDVRYGLKQLWKSKGVTIVAIVSLAVGIGANSVIFSVVN
                     SFLLRPRAVSSPEQLVQIYTGDRNQPYQTSSYPTYQDFRDRNEVFSGLAAYGVEQFKL
                     DDGNQVEQVWGEFVTGNYFDVLGVPAVKGRTFLPEEDAVPKRDPVVVIGHSLWQRRFN
                     SDPELVGKTIGINNQPLTVIGIAPPTYNGMFGGIAAEVWVPLMMTASVDQRRGERALS
                     SRGNRWLTFVGRLKPDTTIEQARARFELITKEMREAHPEEWRTPKRELTTYVMSESET
                     RVHPGAREMVWAIAAALFVTVNLVLLIACINLASMLLARAVARRNEIAVRLALGARRS
                     RIVRQLLTESVLLALVAGAAGLLLAVWLLDLATAFMPALPEGIRVAVDLRLDWRVLVY
                     TISFATLTGLLFGLVPALHSSKAEVATVLKDDSSLFSGRYRKSRIRMSLVVAQVAFSL
                     LLLIGAGLVLRSLEKIRPTRLGF"
     gene            complement(1440..>2933)
                     /locus_tag="VGD38_09585"
     CDS             complement(1440..>2933)
                     /locus_tag="VGD38_09585"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0728308.1"
                     /translation="NRKQLVRQFFLEGLLLALFGTVAGLAVAQLGLKVLLNFVPPQMI
                     PRLAQVGLDWRVLGFTLVLSLATCLLFGLVPAWQASKPDLQTALEQSGRTSGPGAARL
                     RFRQLLVVFQVSVAVMLVIGAGLLIKSFWLLQKVDPGFKAQRVLSAEITLPASKYDEP
                     VKINNFFNQLNERVAAVPGVESVSIAYDHPLQSNWLDAFEIEGRASTPANPEQANFMP
                     VGPDYFNTVGVQAVSGRTFTPQDDADHPGVAVVNEAFVRHYFPNENPLGRRIRPGPPG
                     RIWDQKRLTSFEIVGVVRDVKFDGLAAASEPAYYLPATQAPLNDMTMLVRTTSDPQSV
                     VAGLRQAVWSIDPNQPISNVNTLEQIVSESIAQPRLNMLLMMLFGGLALLLSAVGIYG
                     LLSYAVTQRTQEMGIRMALGANVTDVLKLVLKQGMFLALIGEVIGLAGAFALTRLMRG
                     LLFGVTPTDTTIFAGVVAVLTLTALLACYLPARRATKVDPLVALRYE"
BASE COUNT          658 a          933 c          801 g          541 t
ORIGIN      
        1 gaacccgagt cgcgtcggtc tgatcttctc gagactccgc aacacgagac ccgcgccgat
       61 cagcaacagc aacgaaaacg ccacctgggc caccaccagc gacatgcgaa tgcgcgactt
      121 gcgataccgg ccgctgaaca aactcgaatc gtctttcagc actgtcgcga cttccgcttt
      181 cgaactgtgc agcgcaggca cgagcccaaa caatagtccc gtcagcgtcg caaacgatat
      241 cgtgtaaacc agcacgcgcc agtcgagacg aagatcgacc gcgacgcgta tgccttccgg
      301 caacgcgggc atgaacgcgg tggcgagatc gagtaaccag acggcgagca gtaatcccgc
      361 ggctccggca accagcgcca acaacacact ctcggttagc agttgcctca cgatgcgcga
      421 gcgccgcgcg cccaacgcga gccgcaccgc gatctcgttg cgccgtgcga ccgctcgcgc
      481 cagcaacatg ctcgcgagat ttatgcaggc gatcagcaac acgaggttca cagttacaaa
      541 cagcgcggcg gcgatggccc aaaccatctc gcgtgctccc ggatgaacgc gcgtttcgct
      601 ttcagacatc acgtaagtag tgagttccct tttcggcgtc cgccattctt cgggatgtgc
      661 ctcgcgcatc tccttcgtga tcagctcaaa acgcgcccgc gcttgctcaa tcgtcgtgtc
      721 tggtttcagc ctgccgacaa acgtcaacca gcgattgccg cggctcgaca gcgcgcgctc
      781 acctcgccgc tgatcgactg aagcagtcat catcagcggc acccaaacct cagcagcgat
      841 tccgccaaac atcccgttgt atgttggcgg cgcaatgccg atgacggtta acggctgatt
      901 gttaatcccg attgttttgc ccacgagctc gggatcggaa ttgaaccgcc gctgccaaag
      961 cgagtgaccg atcaccacga ctggatcgcg tttcggcacc gcgtcttcct cgggcagaaa
     1021 cgtgcggcct ttgaccgcgg gaacgccgag cacgtcgaag tagtttccgg ttacaaactc
     1081 accccaaacc tgctcgacct gattgccgtc gtcgagtttg aattgctcca cgccgtaagc
     1141 ggcgaggccg ctgaaaactt cattacggtc acgaaaatcc tggtaagtcg gatacgaact
     1201 ggtttgataa ggctgattgc gatcgcccgt gtagatttgg accaactgct ccggcgacga
     1261 caccgcgcgc ggtctgagga ggaatgagtt gacgacgctg aagatgacag agtttgcgcc
     1321 aatgccgacc gcgagcgaca cgatcgcgac gatggtcaca cctttgctct tccagagttg
     1381 tttgaggccg tagcgaacgt cttggattag aatgtccatc ggctttttat ccccggccct
     1441 tactcgtacc ttagcgccac caacgggtcc actttcgtcg cccgccgtgc gggcagataa
     1501 caagccagca acgctgtgag agtcagcacc gccacaacgc ctgcgaagat cgtcgtgtcc
     1561 gtcggcgtca caccaaacaa cagcccacgc atcaagcgcg tcaacgcaaa agctcctgcc
     1621 agaccaatca cttcgccgat cagcgcgaga aacattccct gcttcaacac gagcttcaac
     1681 acatcagtca cattcgcgcc gagggccatg cgaatgccca tctcctgcgt tcgctgcgtc
     1741 actgcgtacg aaagcaaacc gtagatgccg acggccgaaa gcagcagtgc gagcccgcca
     1801 aacagcatca tcaaaagcat gttgagacgc ggctgtgcga tgctctcgga gacgatctgc
     1861 tccaacgtgt tgacattgct tatcggctga ttgggatcta tggaccagac ggcttgccgc
     1921 agtccggcaa caaccgactg tggatcgctc gtcgtgcgga caagcatcgt catgtcgtta
     1981 agcggcgctt gcgtagccgg aaggtaatac gccggttcag aagccgccgc gagcccgtca
     2041 aacttcacat cgcgaacgac gccgacgatc tcaaacgatg tcagccgctt ctggtcccag
     2101 attcgccccg gtggaccagg acggatacgg cggccaagcg gattctcgtt aggaaagtag
     2161 tgacgaacaa acgcttcatt cacgaccgca acgcccggat gatcggcgtc gtcctgcggc
     2221 gtgaacgttc gcccgctgac ggcctgcact ccgacggtgt tgaagtagtc gggaccgacc
     2281 ggcatgaagt tggcctgctc gggatttgcc ggcgtgctcg cgcggccttc gatttcaaac
     2341 gcgtcgagcc agttcgactg cagcggatgg tcgtaagcaa tcgacaccga ttcgacgccc
     2401 ggcaccgccg cgacgcgttc gttcaactga ttgaagaagt tgttgatctt gacgggttcg
     2461 tcgtacttcg acgcgggcaa cgtgatttcg gctgacaaca ctcgttgcgc cttgaaaccc
     2521 ggatcgactt tttgcagcag ccagaagctc ttgatgagca gtcccgcgcc gatcaccagc
     2581 atcaccgcga cacttacctg aaacaccacc agcaactgtc gaaaacgcag acgcgccgcg
     2641 cctggaccag acgtgcggcc gctttgttcg agcgccgttt gcaaatcggg cttcgacgcc
     2701 tgccatgcgg gcacgagccc aaacaacaaa cacgtcgcga gcgagagcac gagtgtgaaa
     2761 ccaagcacac gccagtcgag cccgacctgc gccagccgcg ggatcatctg cggcggcacg
     2821 aagttcaaca acacttttaa gccgagttgg gccactgcga gaccggcgac agtgccgaac
     2881 aacgccagca acagtccttc aagaaagaac tgccgtacta attgtttacg att
//
LOCUS       DASWTX010000627         3811 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_53230, whole genome shotgun sequence.
ACCESSION   DASWTX010000627 DASWTX010000000
VERSION     DASWTX010000627.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3811
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53230"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..202)
                     /locus_tag="VGD38_09590"
     CDS             complement(<1..202)
                     /locus_tag="VGD38_09590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728309.1"
                     /translation="MPRAAAPALRRAKKLQPETKIHRAVDVRQRQFLAVAAAAACLLA
                     TFAVNVRSSRASSQMRSELASAD"
     gene            642..2120
                     /locus_tag="VGD38_09595"
     CDS             642..2120
                     /locus_tag="VGD38_09595"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0728310.1"
                     /translation="MLGLTLGIQYYFNLRTVKNNAKMIIEQEKAIMTGIALGLDSLQS
                     DKYLFDIISNVKDPLLNNKDVRVKNILVVDDAGRIFDSLQPEYGPRQMADNTVQYVQV
                     QNLELPPLRSAVQYTSGREQLPPWIPGPTSSDFGAAGAIYFPVETDQGRRFIIVVLDS
                     ANILTNVFERQATRSALYTLAVLFVTTIVTGYFVWRFTRPVKELSTAARKVAGGNFDV
                     QVASERRDEMGTLAAAFNEMTAKLGRARELETQLHQAEKGAVVGRLAAAIAHEIRNPL
                     NYINLTLDHLRSSFAPEDPSKRTTCVQLTDQLKTEVARINRHITDFLKYSRPSKLELQ
                     DLDIRAEAEDALRLVEVRASECGIETKVEQDGSVRHVIGDRESLRSVFTNLVINAVEA
                     IDGSGGSVSIRLSNTDQNSVKVEVIDTGRGISPDDISKVFEPYFSTKETGTGLGLAIV
                     KKAVDDHGGTISVASKEGSGTTFTIILPGREKGHGTQEHTGS"
     gene            2092..3441
                     /locus_tag="VGD38_09600"
     CDS             2092..3441
                     /locus_tag="VGD38_09600"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY0728311.1"
                     /translation="MARKSILVVDDEKAQREILELILSDEGYDVTTAASGEAALKFAK
                     DRRFDLALTDLKMTGMDGIELLQHLLAYDSSIIVILLTAHGSIESAKEALRRGAFDYL
                     EKPYDKAALLETINRALDRLDAIDSEIISASPKMETVKKMILKVARSNSTVLIRGESG
                     TGKELIARAVHNQSPRNDEMFQAVNCAAINENLLESELFGHEKGSFTGAHAEKKGLFE
                     IADRGTLFLDEIAELDVGIQAKLLRALQERKIRRVGGTHEISVDVRVIAATNRDLRAM
                     VSDGRFRDDLYYRINVLSIDVPPLRERREDIPVLIDYFLKKHTKNTSRLITGLTPETK
                     KLMVDYSWPGNVRQLESAIERAILLAENDKITLEDLPTEVRQDAGPASEGAFKLPAEG
                     INFEDVERNLITQAMEQTDYNITKAAKLLGLTFRTLQYRLEKFGIKKPDGTDGTEDE"
     gene            3583..>3811
                     /locus_tag="VGD38_09605"
     CDS             3583..>3811
                     /locus_tag="VGD38_09605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728312.1"
                     /translation="MSLKEENPREVVHEDPLADATQVISDAIPPGVDRRTFMMRGAVV
                     AATAVITGRNISAQEKQARSSAAPPPLDPNLN"
BASE COUNT          900 a         1052 c         1080 g          779 t
ORIGIN      
        1 agtctgcgct cgcgagctct gatcgcattt gactgctcgc gcgcgacgag cgcacgttga
       61 cggcgaacgt cgcgagcaga caagcggctg ccgcggccac ggcgagaaac tgccgctgtc
      121 gcacgtccac ggcgcgatga atttttgttt ctggctgtag cttttttgct cttctgagcg
      181 cgggcgctgc ggcccgaggc attgcgtttc ttcccgaata ccgtaccgga aaaagccaaa
      241 caaagcagga taaatataat gaagacgagc cggtcggggc gacgggaatg gaacttgggt
      301 gtcatcaggg cctacttacc tttctgtagg gattttgctc acctggcggt gagtgaactc
      361 caaaaacctc ttctttaggt tcaaaacaac taaacctacc tagctttcgc tcggcctcgc
      421 ggcaactgac tgcaattgag gtgggaagat ttccctaaac ggcggtccct ggggacattg
      481 attcgagacc gccataaata taacatcggc tctctcccat gggcaacaaa aaagtaattg
      541 attatacata aatcactgga aggccagcgc aacacttaat catgagattt ccagcccttg
      601 tagaaagctt tcgagcccgg cttctcctcc tcctcgctct aatgcttgga cttaccctcg
      661 gcattcagta ctacttcaat ctccgcacgg tcaaaaacaa cgccaagatg atcatcgagc
      721 aggaaaaggc gatcatgacc ggtatcgccc tcggcctcga tagtcttcaa agcgacaagt
      781 acctcttcga catcatcagc aacgtcaaag atcctctgct caacaacaaa gacgtgcgcg
      841 ttaaaaacat ccttgtcgtc gacgacgccg gcaggatctt cgacagcctg caacccgagt
      901 acggcccccg ccagatggcg gataacactg ttcaatacgt ccaggttcag aatctcgaac
      961 tgccgccgct gcgcagcgcc gttcaataca ccagtggacg agaacaactt ccgccctgga
     1021 ttcccggtcc gaccagttcc gatttcggcg ccgcgggtgc catctacttt ccagtagaga
     1081 ccgatcaggg ccgccgtttc ataattgtgg tgctcgactc ggcaaatatt ttgaccaacg
     1141 tcttcgagcg ccaggccacc cggtccgctc tttacacgct ggcggtcctg ttcgtgacca
     1201 caattgttac gggctacttc gtctggcggt tcactcgccc ggttaaagag ctctccaccg
     1261 ccgcgcgcaa agttgccggc gggaactttg atgtacaggt cgcttcagaa cgtcgggacg
     1321 agatgggcac gctcgctgcg gcgttcaacg agatgacggc taaactcggt cgcgcacgcg
     1381 aacttgaaac tcaactgcac caggccgaga aaggcgccgt cgtcgggcga ctggccgcgg
     1441 ccatcgcgca cgagattcga aatccgctta actacatcaa cctgacgctc gatcatctgc
     1501 gctcgtcgtt tgctccggag gatccgtcaa agcgaacgac ctgtgtacag cttaccgatc
     1561 aactcaagac ggaagtcgcg cgcatcaatc gtcacatcac cgactttctg aaatactcgc
     1621 ggccgtccaa gctcgaattg caggacttag atatccgtgc cgaggcagag gatgctttgc
     1681 gcctggtgga agtcagggcg agcgagtgtg gcatcgaaac aaaagtcgag caggatggtt
     1741 cggtgcggca cgtgattggg gaccgcgaat cgttgcgttc ggtgtttacg aatctggtga
     1801 tcaatgcagt cgaggcgatc gacggctccg gcggcagtgt ttcgatccgt ctttcgaaca
     1861 cggaccaaaa ctctgttaag gtagaggtca tcgatacagg acgcggcatc tccccggacg
     1921 acatttcgaa agtgtttgag ccgtactttt cgacgaagga gacaggcacc ggactcggtc
     1981 tggcgattgt gaagaaagcg gtcgacgatc acggcggcac gatcagcgtc gcttcgaaag
     2041 aaggcagcgg tactacgttc accattatcc taccgggtag agagaaggga catggcacgc
     2101 aagagcatac tggtagttga cgacgaaaaa gcacaaagag aaatcctgga actgattctg
     2161 tctgacgaag gctacgacgt gactacggcc gcgtcaggcg aggctgcgct gaagtttgcg
     2221 aaggaccgcc gttttgatct cgcgctgacg gatctgaaga tgacgggcat ggacgggatc
     2281 gagctgttac agcacctgct ggcttacgat tcgtcgatca tcgtgatcct gttgaccgcg
     2341 cacggctcga ttgagtcggc aaaggaagcg ttgagacgcg gcgcgtttga ctacctcgaa
     2401 aagccttacg acaaagccgc tctgctggaa acgatcaatc gcgctttgga tcggctggat
     2461 gcgatcgaca gcgagatcat ctctgcgtcg ccgaagatgg agacggtaaa gaagatgatc
     2521 ttgaaagtgg cgcgttctaa ttcgacggtg ttgattcgcg gcgagtcggg aacgggaaaa
     2581 gagttgatcg cgcgtgcggt ccacaatcaa tcgccgcgca atgatgagat gtttcaggcg
     2641 gtgaactgtg ccgcgatcaa cgagaacctg cttgagtcgg aattgtttgg gcacgagaaa
     2701 ggatcgttca ccggagcgca cgccgagaag aaaggtcttt tcgagatcgc ggatcgcggt
     2761 acattgtttc tcgacgagat cgcggagctc gacgtcggca ttcaggcgaa gctgttgcgt
     2821 gcgctgcagg aacgaaagat caggcgcgtt ggcggaacgc acgagatcag tgtcgacgtg
     2881 cgcgtgatcg cggcgactaa tcgcgacttg cgggcgatgg tttcggacgg gcgttttcgg
     2941 gacgaccttt actatcgcat caacgtgctc tcgatcgacg tgccgccgtt gcgcgagcgc
     3001 cgcgaggaca tacccgtcct tattgattac ttcctgaaga agcacacgaa gaacacgtcg
     3061 cgtctgatca cgggtttgac gccggagacg aagaagttga tggtcgacta cagttggccc
     3121 ggcaacgtgc gccagctcga gtcggcaatc gagcgcgcga tcctgttggc ggaaaacgac
     3181 aagatcacgt tggaagacct gccgacggaa gtgcgccagg atgctggacc agcgtcggag
     3241 ggagcgttca agttaccggc ggaaggaatc aatttcgaag acgtcgagcg caacctgatc
     3301 acacaggcga tggaacagac ggactacaac atcaccaaag ccgcaaagct cctcgggttg
     3361 accttccgca cgctccagta tcgtctcgag aagttcggca tcaagaaacc cgacggcact
     3421 gacggtactg aagacgagta gataaaaaca atagcctcac ttccctttcc tagtattttt
     3481 gacagtacaa gtctccccgc accgcctcga tactcaccac taaagcaagc aaagcaggtc
     3541 agcgctgtct tgcacgattt tgatgaaagg ttgaggtgtg ccatgtccct taaagaagag
     3601 aacccccgcg aagttgttca tgaagacccg cttgccgatg cgacgcaggt catctcagac
     3661 gcgatcccgc ctggcgtaga ccgacgtact ttcatgatgc gaggtgctgt ggtcgccgca
     3721 accgcggtca tcaccggcag aaacatttcc gcgcaggaga aacaggcgcg gtcctcggct
     3781 gcgcctccgc cactcgatcc gaacctcaac g
//
LOCUS       DASWTX010000628         4959 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_224110, whole genome shotgun sequence.
ACCESSION   DASWTX010000628 DASWTX010000000
VERSION     DASWTX010000628.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4959
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224110"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..344)
                     /locus_tag="VGD38_09610"
     CDS             complement(<1..344)
                     /locus_tag="VGD38_09610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728313.1"
                     /translation="MNGIQNALNPAGPHAASLSNLWWLMFWVCSAVYVLVLIGLAIAI
                     KNGRRETDLNPVLNPRPKTERRMRNVVLSATIVTVAILFVFLLSSFQVGRSLTADIKN
                     KNGLSIEVTGRQ"
     gene            complement(341..874)
                     /locus_tag="VGD38_09615"
     CDS             complement(341..874)
                     /locus_tag="VGD38_09615"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEY0728314.1"
                     /translation="MFRVLICVSLCLVFCGCKREERKFTAPPSTFKSYNVTMSDIHPG
                     SAGLPQPVRNESDDRAYDTSEGKRLFTQYNCAGCHFNGGGGIGPPLMDAQWIYGETPE
                     NIYSTITEGRPNGMPSFRHKIPDNQVWQLAAYVRSMSGQLRKDVEPGRNDDMNSRRSE
                     QRTEEKTPQRTTPGPQQ"
     gene            complement(867..1634)
                     /locus_tag="VGD38_09620"
     CDS             complement(867..1634)
                     /locus_tag="VGD38_09620"
                     /inference="COORDINATES: protein motif:HMM:TIGR03871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEY0728315.1"
                     /translation="MSQPTGVLRVCADPNNLPFSNEQGEGFENKIAELRARDLGERVE
                     YTWWAQRRGFFRNTLRAGTCDIVIGVPAAFEMALTTKPYYRSTYVFLTRKDRRLNLKS
                     LDDPSLKKLKIGVQIIGDDFSNAPPAHALGRRNIIGNVKGYTVYGDYSQPNPPARIVD
                     AVAKGDVDVAIVWGPLAGFFAKQSHVPMEVVPVTPQIDQPFLPFVFDISMGVRRGDQD
                     LKDQIEEVLERRRDEVDRILRDYAVPRIDQQKGDHGV"
     gene            complement(1705..3435)
                     /locus_tag="VGD38_09625"
     CDS             complement(1705..3435)
                     /locus_tag="VGD38_09625"
                     /inference="COORDINATES: protein motif:HMM:TIGR03075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methanol/ethanol family PQQ-dependent
                     dehydrogenase"
                     /protein_id="HEY0728316.1"
                     /translation="MLTAPTGASVVAEAEDGQWIMPAKNYASTRFSGLEEINTSNVAH
                     LKLAWSFSTGVLRGHEAAPIVANNTMYVITPYPNIVYALDLTKPGAPVKWKHEPNPSS
                     SAQGVACCDVVNRGVVYSEGRIFFNTLDNHTIALDSETGEEIWNTKVGEINMGESMTM
                     APLVVKGKVLVGNSGGEFGVRGWLTALNASDGKVAWRAYHTGPDADVLIGPNFKPYYA
                     QDQGKDLGVTSWPTDAWKIGGGTTWGWISYDPELNVIYYGTANPGPWNAEQRPGDNKW
                     TSGIFARNPDTGEALWFYQFSPHDLHDYDAVNEQILMDVPVNGQPRKVLVRPERNGYV
                     YIMDRTNGQVLSANPFGYITSSKGVDLNSGRLIYTEEKTPQVGQTVREICPASPGAKD
                     WQPSAFSPRTGLVYIPHQNLCMDTEGLEANYIAGTPYVGANVRMYAGPGGNRGEFLAW
                     DPVKNEKVWAISENFPVWSGALVTAGDVAFYGTMDGWFKAVDAKSGTLLWQFKCGSGI
                     IGQPVSYRGPDGKQYVAILSGVGGWSGAIVAAGLDPRDQTGALGFVGAMADLPEDTTK
                     GGMLYVFALP"
     gene            3643..>4959
                     /locus_tag="VGD38_09630"
     CDS             3643..>4959
                     /locus_tag="VGD38_09630"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0728317.1"
                     /translation="MRNRTASDHSCTGRLQTTLALVCVLFVCASVQAQERVISGVVSD
                     STGAKIPQAEVEFEFGGRIVRTRTDESGKFTLVSAPESGTLTVQSAGFNTARMELGAQ
                     PCNDLQIWLEPASLMERIVVTAGDERIPVTPASQYGIGRREIAVSGALTVDDVLRQAP
                     GFTLFRRSGSLTANPTTQGVSLRGVGANGASRALVMYDGVPLNSPFGGWVYWNRVPRV
                     GIESVEIFNGAASDLYGSGALGGVINILTRTAPATYLDLEASGGNQSTATASISAGKS
                     WRSFGVGLALQALRTDGYVLVPPEQRGAVDVAAGTSDIAGSLMLSKSFGPRVRSFLRF
                     GSFGESRRNGTPLQMNDTRITSLDLGGDWSSWHAGDFSLRLYGSSENFNQNFTAVAAN
                     RNSEVLTNRQRNPSQQLGFAFQWRRPLGDMHLISAGVEGRYVRGHSA"
BASE COUNT          923 a         1411 c         1527 g         1098 t
ORIGIN      
        1 cattgacggc ctgtgacttc gatcgacaat ccgttcttat tcttaatatc cgcggttaat
       61 gaccggccaa cctgaaaact cgacaacaaa aacacgaaga gtatggctac cgttactatc
      121 gtcgcgctga gaactacgtt acgcatccgt ctctcagttt ttgggcgggg atttaagact
      181 ggattgagat cagtttcacg gcggccgttt ttgattgcga ttgcaaggcc gatcagaacg
      241 agtacataga cagccgagca gacccagaac atcagccacc aaagattgct gagactggcc
      301 gcgtgtgggc cggcgggatt gagcgcgttc tgaatgccgt tcattgctgt ggccccggcg
      361 ttgttcgttg gggcgtcttt tcctccgtgc gctgctccga gcggcgcgag ttcatgtcgt
      421 cgttgcgtcc cggttcgacg tctttgcgca actgtccgct catcgagcgc acgtacgccg
      481 cgagttgcca gacctggttg tcgggaatct tgtgccggaa cgaaggcatg ccgttcgggc
      541 gtccttcagt gatcgtcgag tagatgtttt ccggcgtctc gccgtagatc cattgcgcgt
      601 ccatcaacgg tggtccaata ccgccgccgc cgttgaagtg acagccggcg cagttgtatt
      661 gcgtgaacag gcgcttgcct tcgctggtgt cgtaggcgcg gtcgtctgat tcgtttcgca
      721 ccggctgtgg caggcccgcg ctgccgggat gaatgtcgct catcgtgacg ttgtaggact
      781 tgaacgtcga cggcggcgca gtgaactttc gttcttcgcg tttacagccg cagaaaacga
      841 gacacagaga aacacagatc agaactctaa acaccgtgat ctcctttctg ctgatcgatg
      901 cgcggcactg cgtagtcacg aaggatgcga tcgacttcgt cgcgccgccg ctccaacacc
      961 tcttcgattt gatctttcag atcctgatcg ccgcggcgca cgcccatcga gatgtcgaac
     1021 acaaacggca ggaacggttg atcgatctgc ggcgtgaccg gcacgacttc cattggcacg
     1081 tgtgactgct tcgcaaaaaa acctgccagt ggtccccaga cgatcgctac gtcgacgtcg
     1141 cctttcgcga ctgcatcgac gattcgtgcc ggtggatttg gctgactgta gtcgccgtag
     1201 acggtgtagc ctttcacgtt gccgatgatg ttgcggcggc cgagtgcgtg cgcgggcggg
     1261 gcgttgctga aatcgtcgcc gatgatctgg acgccgatct tgagtttctt gagtgatgga
     1321 tcgtcgagtg acttgagatt gagacgtcgg tctttgcgtg tcagaaagac gtaggtcgaa
     1381 cggtagtacg gcttcgtcgt taaagccatc tcgaacgccg cgggcacgcc gatgacgatg
     1441 tcgcacgtgc cggcgcgcag tgtgttgcgg aagaagccgc ggcgctgcgc ccaccacgtg
     1501 tactcgacgc gctcgccgag atcgcgggct cggagttcgg ctattttgtt ttcgaagcct
     1561 tcgccttgct catttgaaaa cggcaggttg tttgggtccg cgcagacgcg taagacgcct
     1621 gtaggctgcg acacagtgac ttgggatctt tgctcggtac acccgctaag gtacagcgcc
     1681 acgatcaaag aaaagaatat ttttttaggg aagcgcaaag acatacaaca tgcctccctt
     1741 cgtcgtgtcc tccggcaggt ccgccatcgc gccgacaaac cccaacgcgc ccgtctgatc
     1801 gcgcgggtcg aggccggccg cgacgatggc cccggaccag ccaccaacgc ccgagagtat
     1861 cgccacgtac tgctttccat ccggcccgcg ataactcacc ggttgaccga tgattcccga
     1921 gccacacttg aactgccaca acaacgtccc gctcttcgcg tcgaccgctt taaaccaacc
     1981 atccatcgtg ccgtaaaacg cgacatcgcc cgcggtcaca agcgcgccgc tccacacagg
     2041 aaaattttcc gagatggccc acaccttctc gttcttcacc ggatcccacg cgagaaactc
     2101 accgcgattc ccacccggtc cggcatacat ccgcacgttc gcgcccacgt aaggcgtgcc
     2161 cgcgatgtaa ttcgcttcca gtccttccgt gtccatgcag aggttttggt gcgggatgta
     2221 aacgaggccc gtgcgcggcg aaaacgccga cggctgccag tccttcgcgc ccggcgaagc
     2281 gggacagatc tcgcgaacgg tctgcccgac ctgcggcgtc ttctcctcgg tgtagatcag
     2341 ccgtccactg ttgagatcga cgcccttgct cgacgtgatg tagccaaacg gattcgccga
     2401 gagcacctgc ccgttcgtgc ggtccatgat gtagacgtaa ccgttgcgtt cgggccgcac
     2461 gagaactttg cgcggctggc cgttgacggg aacgtccatg aggatctgtt cgttgaccgc
     2521 gtcgtagtcg tgcaggtcgt gtggactgaa ctgataaaac caaagtgcct ccccggtgtc
     2581 gggattacgt gcgaagattc ccgaagtcca cttgttgtcg cccggccgtt gctctgcgtt
     2641 ccacggaccc gggttcgcgg tgccgtagta gatcacgttg agctccgggt cgtatgagat
     2701 ccaaccccac gttgtgccgc cgccgatctt ccacgcgtcg gtcggccagc tcgtcacgcc
     2761 gagatccttg ccctggtcct gcgcgtaata aggcttgaag ttcggaccga tcaaaacgtc
     2821 tgcgtccggt ccggtgtgat aagcgcgcca cgcgaccttg ccatcgcttg cattcagagc
     2881 cgtcaaccag ccgcgcacac caaactcgcc gccgctgttg ccgacgagca cttttccctt
     2941 caccacgagc ggcgccatcg tcatcgactc gcccatgttg atctcgccga ctttcgtgtt
     3001 ccagatctcc tcgccggttt cggagtcgag cgcgatcgtg tggttgtcga gcgtgttgaa
     3061 gaagatgcgt ccttcggaat agaccacgcc gcggttgacg acgtcgcagc acgcgacgcc
     3121 ctgcgctgaa gacgacggat tcggttcgtg tttccacttc accggcgcgc ccggctttgt
     3181 caggtccagt gcgtagacga tgtttggata cggcgtgatc acgtacatcg tgttgttggc
     3241 gacgatgggc gcggcttcat ggccgcgcaa cacgccggtc gaaaaggacc aggcaagctt
     3301 caggtgcgcg acgtttgacg tgttgatctc ttcgaggccg ctgaaacgcg tgctcgcgta
     3361 gttcttcgcg ggcatgatcc actggccgtc ttctgcttcg gcaaccacgc tggccccggt
     3421 tggcgctgta agcacgcggt tcccggtgga ccgcggtggt tcggtgcgct ctggtgtaca
     3481 ggttgtgcaa aggaaaactg cgccgataac gatcgcagtt cgcaggaggg tcagccatgg
     3541 atttggtctg atcacagtct ggtccaggaa aacgttcagc gggtgagaca agacatgcaa
     3601 ctttgagggc actctaatgc tatgctttga acaattcccg agatgagaaa cagaacagcg
     3661 tcggaccact cgtgtaccgg aagactacaa acaacgcttg cgttggtttg cgtgttgttc
     3721 gtgtgtgcga gtgtgcaggc ccaggagcgt gtgatctcgg gcgtggtctc cgattcaacg
     3781 ggtgcaaaga tcccgcaggc cgaagtggag tttgaattcg gaggacgcat tgtacgaaca
     3841 cgtacagatg agagtggcaa gttcacgttg gtaagcgcgc ctgagagtgg aacgttgacc
     3901 gtgcaatcgg cgggcttcaa cacagcgcga atggagctcg gtgcgcaacc ttgtaacgat
     3961 ttacagatct ggctcgagcc ggcgagtttg atggagcgca tcgtggtgac tgcgggtgac
     4021 gaacgcattc ccgtcacgcc cgcgagccag tatggaatcg ggcgccgcga gattgcggta
     4081 tcgggtgcgt tgacggtcga cgacgtcttg cgccaagcgc ccgggtttac gttgttcaga
     4141 cgttcgggaa gtttgaccgc gaatccgacg acccaaggtg tttcgctgcg aggcgttgga
     4201 gcgaatggcg cgagtcgcgc gctcgttatg tacgacggtg ttccgttgaa tagcccgttt
     4261 ggtggttggg tttattggaa ccgcgtgccg cgtgtgggga ttgagagtgt cgagatcttc
     4321 aatggcgcgg cgtctgatct gtatggcagc ggtgcgctcg gcggcgtgat caatatcctg
     4381 acgcgcactg cgccggcgac gtatctcgat ctcgaagcgt ccggtggaaa ccaatcgacg
     4441 gccactgcgt cgatcagcgc gggaaaatcg tggcgtagtt tcggtgtggg attggcgctg
     4501 caggcgttgc gtactgatgg atacgtgctc gtgccgccgg agcagcgcgg tgcggttgac
     4561 gttgcggctg ggacgtcaga cattgccggg tcgttgatgt tgtcgaagag ttttggcccg
     4621 cgcgtgcgct cgtttttgcg gtttggatcg tttggtgaga gccggcgaaa cgggacgccg
     4681 ctgcagatga acgacacgcg tatcacgtcg ctcgatctcg gcggcgactg gtcgtcatgg
     4741 catgcgggcg acttttcgct tcggctttac ggatcgagtg agaacttcaa tcagaacttc
     4801 accgctgtgg cagcgaatag aaattccgaa gtgttgacca accggcagcg caatccttcg
     4861 caacagcttg ggttcgcgtt tcagtggcgg cggccgctgg gcgatatgca tttgatctcg
     4921 gcgggtgttg aagggcgata cgttcgcggg cacagtgcg
//
LOCUS       DASWTX010000629         5058 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_419425, whole genome shotgun sequence.
ACCESSION   DASWTX010000629 DASWTX010000000
VERSION     DASWTX010000629.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5058
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_419425"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..804)
                     /locus_tag="VGD38_09635"
     CDS             complement(<1..804)
                     /locus_tag="VGD38_09635"
                     /inference="COORDINATES: protein motif:HMM:NF025078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4157 domain-containing protein"
                     /protein_id="HEY0728318.1"
                     /translation="MTKAVNQEHASTDQLLPPPQNVLQRKCDCGNHTVAGGQCTECAK
                     KTAATQTSQGPVQRKLMVGHASDHSEREADKVADHVSRADSIASAPPRLERNTSPAVA
                     HEPAPDSVNQVLSSSGSQLDSSVRHDMEARFGHDFSRVRVHSGAAAEQSARDVNAEAY
                     TVGNNIVFGAGKFAPSTQPGRHLLAHELTHVLQQSGKAASPARVARQTPAAPQQLVAH
                     VTPEIEAGLIHELQSARAQAPPSTSVRQESLRTFAVAAIIRPDGSVTYES"
     gene            complement(801..1058)
                     /locus_tag="VGD38_09640"
     CDS             complement(801..1058)
                     /locus_tag="VGD38_09640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728319.1"
                     /translation="MNVNLHIERLIVDGLEIDPSKRDSFKSGIERELTALLTAGGVGE
                     ALSAGGALPRVEGPSIQLQPDNSTVQLSRQIAGSIYGGIGR"
     gene            complement(1061..3172)
                     /locus_tag="VGD38_09645"
     CDS             complement(1061..3172)
                     /locus_tag="VGD38_09645"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0728320.1"
                     /translation="METWLENNNRYLEASLAWLRLRLERVRAQDSVEPPGDSAPVPVV
                     EESPAKQKRFAKWKRQTQEVSQPVKLLTAGTPPTLDQLIEETEAKREAAARCDPPPAL
                     QILADSFGLSEFERDTLLLCASSEFDPGFATLCGLAQRHQARNYPTFALALTLFDDPS
                     WDGLAAHRPLRYSRLIEINQPGPTPLTAAALRADERIVNFIKGLNAVDDRLITLFEPV
                     SSANTLLSDSQNEVVDTLLQRLSGPDGDTRPIQLVGVDPGSRLAVAEEICDRIGRRLF
                     RLQLETLPQNPAEIETIARLWQRETLLLPIGLYIDADSSPHASAEATSGLQKFLSRHL
                     GLVFVAVRESLVQLRNATLTIEVQKPTRLEQSQAWTTIVEGIDPETPAVETAKELAGQ
                     FDLNITDIRAISNNTLRNRGPKPVRQELWDACRELTETNLDSLAQRLQPKATWDDLVL
                     PDEQAEILRQIAGQVRGRHRVYDEWGFAQKMNRGFGISALFAGETGTGKTMAAEVIAN
                     DLQLSLYRIDLSAVISKYIGETEKNLQRLFDAAERGGVILLFDEADALFGKRSEVKDS
                     HDRYANIEVNYLLQRMEAFSGLAILATNMKSALDTAFSRRLRFVVNLPFPSIKERKLI
                     WQKAFPAEMPRKDLDFDRLARLSLSGGNIHSIALNAAFIAAQNGQTVTMPILMNAARA
                     ELKKLDKSFSESELRVLGGVA"
     gene            complement(3175..4491)
                     /locus_tag="VGD38_09650"
     CDS             complement(3175..4491)
                     /locus_tag="VGD38_09650"
                     /inference="COORDINATES: protein motif:HMM:NF025431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4255 domain-containing protein"
                     /protein_id="HEY0728321.1"
                     /translation="MSSPLAIAAVTAALKDLLNDGLLNHDLSPVGSVSVTAVPPDRVT
                     TGQTEPNQLNLFLYQVTPNLGWRNHGLPARDRNGVRLTSNPLALDLHYLLTAYGSQDL
                     NAEILLGYAMHLLHETPVLTRAQLRTVLGAPSPVDGTILPGPFGTLSAVDLADQIELI
                     KLAPVYLSTEDLSKLWTAMQARYRPTMGYIASVVLIESSNLGRAAQPVLRRGASDSGP
                     VAVAAPFPTLASVRPEASELLPAMRLGDDLLVTGTSFDDPATMTAVFEDVVSGDVHEL
                     VPAPVQLPTSVRLHLPSIAEDPNAMADWSIGLYRLMLRVTQPNVPTWTTNNLSIALSP
                     IITVNPLNAAAGDVNLTVTCTPRLRPEQFAHTSLLFGSRAVAPTNINNPGDPTQPTSL
                     DFTVPAVAAGEYMVRLRVSGIDSIPATISGTPPVFSVDPNQRVTVA"
     gene            complement(4492..>5058)
                     /locus_tag="VGD38_09655"
     CDS             complement(4492..>5058)
                     /locus_tag="VGD38_09655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728322.1"
                     /translation="EEKPAFKPSAPEVNASDDSQRSLPIREQTLTQDAPQQLSQKPAP
                     SPEPSLETIVEPQAALQRPADENPFDEVDLVADAPEQAQSSVVNNIVVLRTIAQKQNP
                     DQIDEARLLKPVTQRRATRQQMQRSAHARLQSEQPQMETPAQPTINVTIGRVEVRASA
                     PAKRADAARPSAPKLSLEEYLRGRSKGN"
BASE COUNT          954 a         1425 c         1547 g         1132 t
ORIGIN      
        1 ggattcatac gtaaccgaac cgtcggggcg gatgatcgca gcgactgcaa acgtgcgaag
       61 gctttcctgg cgaacactcg tcgagggtgg cgcttgtgca cgcgcacttt gaagctcgtg
      121 tatcaggcct gcttcgattt caggtgtaac gtgcgcgact aattgctgcg gagcggccgg
      181 ggtctgtcgc gcaactcgcg caggactcgc ggcttttccc gattgctgca acacgtgagt
      241 tagttcgtgc gcgagtagat gccggccggg ttgtgttgag ggcgcaaact taccggcgcc
      301 aaacacgatg ttgtttccaa ccgtgtaagc ttcagcattc acgtcgcgcg cggactgttc
      361 cgcggcggct ccagagtgaa cacgcacacg cgagaagtcg tgtccgaacc gcgcttccat
      421 gtcgtgtctg accgaactgt ccaactgcga tccggatgac gacagcactt gattcacgct
      481 atccggcgcg ggttcgtgcg ctacagccgg actcgtgttg cgctcgagac gcggaggcgc
      541 actggcgatg gaatcagcgc gcgatacgtg atcggcaacc ttatcggcct ctcgttcgga
      601 gtgatctgaa gcatgaccga ccatcagctt tcgctgcact ggtccttgag acgtctgagt
      661 agcggccgtc tttttggcgc actcggtaca ctgaccaccg gcgacggtgt gattgccgca
      721 gtcacacttg cgctgcagga cattctgcgg cggcggcagc agttgatccg ttgaggcgtg
      781 ctcctggttg actgcctttg tcaccggccg attcctccgt aaatcgagcc tgcgatttgc
      841 cggcttaatt gcactgttga attgtcaggt tgaagctgga tcgatggacc ttcgactcgc
      901 ggtaacgcgc cacccgcaga cagcgcttcg ccaacacctc cagccgttaa cagcgcagtc
      961 agttcacgct cgattccgga cttgaacgaa tcgcgtttcg acggatcgat ttcgagcccg
     1021 tcgacgatta accgttcgat atgcaggttg acgttcacgg ttatgcgact cctccaagca
     1081 cacgcagttc cgattcgcta aagctcttgt ccagcttctt cagttcagcg cgcgcggcgt
     1141 tcatcaggat cggcatcgtg acagtctggc cgttctgcgc cgcgatgaat gcggcgttga
     1201 gcgcgatgct gtggatgttg ccgccggaga gactgagccg tgcgagccga tcgaaatcga
     1261 gatccttccg cggcatctca gcggggaagg ctttctgcca gatcagtttg cgttctttga
     1321 tactggggaa cggaagattc acaacgaaac gaagccgtcg cgagaacgct gtgtcgagcg
     1381 ccgacttcat gttggtcgcg agtattgcga ggccgctgaa cgcctccatt cgttgcagta
     1441 agtagttgac ctcgatgttt gcgtaacgat cgtgactgtc tttcacttcg ctgcgcttgc
     1501 cgaacaacgc gtcggcttcg tcaaacagga gaatcacgcc gccgcgctct gccgcgtcga
     1561 aaagccgttg caggttcttt tccgtttcgc cgatgtactt gctgatgacg gccgacaagt
     1621 cgatgcgata cagactcaat tgcagatcgt tggcgatcac ttccgccgcc atcgtctttc
     1681 cggtgccggt ttctccagca aacagagcgc tgatgccgaa cccgcgattc atcttttgag
     1741 cgaagcccca ttcgtcgtaa accctgtgac ggccgcggac ctgaccggcg atctggcgca
     1801 ggatctctgc ttgttcgtcg ggtaggacca ggtcgtccca cgttgctttt ggctgcaggc
     1861 gttgggccaa ggaatcgagg tttgtctcag tcagttcgcg acatgcgtcc caaagttcct
     1921 gacggaccgg ttttggacca cgattgcgaa gcgtgttgtt ggaaatcgcg cggatgtcgg
     1981 tgatgtttag atcaaactgg cccgccaact ccttcgcggt ttctaccgcc ggtgtttccg
     2041 gatcgatacc ttcgacgatg gtggtccagg cttgagactg ttccagccgc gtaggcttct
     2101 gcacctcgat ggtgagggtt gcgtttctca gttggaccaa cgactcgcga accgcaacaa
     2161 acacgagccc gagatggcgc gaaagaaatt tctgaagacc ggaagtggct tccgcggacg
     2221 cgtgcgggga actgtccgcg tcgatgtaaa gtccgatcgg caacaacagc gtttcgcgtt
     2281 gccacagccg cgcaatcgtt tctatctccg cagggttttg cggcagggtc tccagttgca
     2341 accggaacag tcgccgtccg attcgatcgc aaatttcctc ggcgactgcg agacggcttc
     2401 cgggatcgac gcccacgagc tggatcggtc tcgtgtcgcc gtcaggtcca ctgagccgtt
     2461 gcagcagagt gtcaaccact tcgttttgtg aatctgagag cagcgtgttg gcggacgaga
     2521 ctggttcgaa caacgtgatc agccggtcgt cgacggcgtt cagtcccttg atgaaattga
     2581 cgatgcgttc gtcggcgcgc aaagccgcgg cagttaacgg cgtgggcccg ggttgattga
     2641 tctcgatgag ccgcgaatag cgaagcggac ggtgtgcggc caatccgtcc cagcttggat
     2701 cgtcgaagag tgtcagcgcg agagcgaacg tcggataatt tcgcgcctgg tgccgctgcg
     2761 cgagaccgca aagcgtggcg aaccccggat caaattcgct cgacgcgcac aacaacaacg
     2821 tgtctcgttc gaactccgat agaccaaagc tgtcggcgag tatttgtaat gccggcggtg
     2881 gatcgcatcg cgccgcggct tcacgtttcg cctcagtctc ttcgatcaac tgatcgagag
     2941 tgggtggcgt gccggcggta agaagcttga cgggctgact cacttcctgc gtttgccgct
     3001 tccacttcgc aaatcgcttt tgcttagccg gactttcttc gacaaccgga acaggcgcgc
     3061 tatcgcctgg cggctcaaca gaatcctgtg ctctcacgcg ttcgagacgc agcctgagcc
     3121 acgccagcga ggcttccaga tagcgattgt tgttttcgag ccacgtttcc attgttaggc
     3181 cacagtcact ctctgattcg gatccacact gaacaccggc ggtgtgccgc tgatggtcgc
     3241 ggggatgctg tcgattccac tcacgcgcag gcgcaccatg tactcgcccg cagccacggc
     3301 cggcactgtg aaatcaagcg acgtcggttg tgtcggatcg ccggggttgt tgatgtttgt
     3361 cggggccaca gctctcgagc cgaacaacag cgaagtgtga gcgaattgtt cgggccgcaa
     3421 tctcggcgta cacgtaaccg tcaggttcac atctcccgcc gccgcgttga gcgggttgac
     3481 ggtgatgatg ggcgagaggg caatcgaaag attgttagtg gtccaggttg gcacgtttgg
     3541 ctgcgttacg cgcagcatca gccggtacaa gccgatggac cagtcagcca tcgcgttcgg
     3601 atcttcggct atgctcggaa gatgaagtct taccgacgtc ggcagttgaa ccggcgcggg
     3661 tacgagttcg tgaacgtcac cggagacaac gtcttcgaag acggccgtca tcgtcgccgg
     3721 atcgtcgaac gatgtgccgg tgacgagcag gtcgtctccc aagcgcatcg cgggcaacaa
     3781 ctcggaagct tcgggacgaa cactcgcaag cgtcggaaac ggcgcggcga ccgcgactgg
     3841 tccactatca ctcgcgccgc gtctcaagac gggttgcgct gctctgccga ggttcgacga
     3901 ttcgatcaag accactgagg cgatgtagcc catcgtcggc cgataacgcg cctgcatcgc
     3961 ggtccatagt ttcgaaagat cttcggtgct gagataaaca ggagcgagct tgatcagttc
     4021 gatttgatcg gcaagatcaa cggccgaaag cgttccgaac ggtcccggca gaatcgttcc
     4081 atcgacaggc gaaggcgcac ccaacacggt tcgcagttgt gctcgcgtca gcacgggtgt
     4141 ttcgtgaagc aagtgcatcg cgtaaccgag caggatttcg gcgttcaaat cctgagagcc
     4201 gtaggccgtc aaaaggtaat gaagatcgag cgcgagcgga ttcgaagtga gccgcacgcc
     4261 gttgcggtca cgcgcgggta agccgtgatt gcgccagccg aggttgggtg tgacctggta
     4321 cagaaacaga ttgagctggt tcggttctgt ttgaccggtc gtgactcgat cgggaggcac
     4381 ggccgtaacg gaaacacttc cgaccggcga cagatcgtga ttcaacaatc catcgttgag
     4441 taggtctttg agcgcggcag tcactgccgc aatggcgaga ggactgctca tctagtttcc
     4501 tttactgcgt ccgcgaagat attcctcgag gctcaatttc ggcgccgacg gacgtgcggc
     4561 atcagcccgt ttcgccggcg cggaagcccg gacttcgacg cgcccgatcg tgacgttgat
     4621 cgtcggttgt gccggcgtct ccatttgagg ctgttcagac tgcaaacgag catgcgccga
     4681 gcgttgcatt tgctgtctgg tcgcgcggcg ttgcgtcacc ggtttcagca aacgcgcttc
     4741 gtcgatctga tccgggtttt gtttttgcgc gatggttcgc agtacgacga tgttgttgac
     4801 gactgacgac tgcgcctgct cgggcgcgtc ggcaacgaga tcgacttcgt cgaacgggtt
     4861 ctcgtccgcg ggtcgttgta aggcggcttg tggttcgacg atcgtttcga gcgacggctc
     4921 aggtgaaggt gcaggttttt gcgagagttg ctgtggcgcg tcttgcgtta acgtttgctc
     4981 gcggatcggc aaactgcgtt gactatcgtc acttgcgttg acttcaggag ccgacggttt
     5041 gaatgcaggt ttctcttc
//
LOCUS       DASWTX010000630         1673 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_336560, whole genome shotgun sequence.
ACCESSION   DASWTX010000630 DASWTX010000000
VERSION     DASWTX010000630.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1673)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1673
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336560"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..180)
                     /locus_tag="VGD38_09660"
     CDS             complement(<1..180)
                     /locus_tag="VGD38_09660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728323.1"
                     /translation="MAEVLRNEAFEEGSISALREDTIASHRRAVERVITDARERLCEP
                     ISLQDMSRVAYVSPFH"
     gene            complement(173..598)
                     /locus_tag="VGD38_09665"
     CDS             complement(173..598)
                     /locus_tag="VGD38_09665"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF024675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEY0728324.1"
                     /translation="MRAYEYRHVVGFEETNLIGNVYYANHVRWQGRCREMFLRDRAPD
                     VIEALKHGLVLVTTRVSCEFMSELVAFDEITLRMRLGELAQNRITMKFEYWRHNHAGE
                     ELVARGEQQVACMQREGEQVVPVPVPTQLREALREYANG"
     gene            complement(585..>1673)
                     /locus_tag="VGD38_09670"
     CDS             complement(585..>1673)
                     /locus_tag="VGD38_09670"
                     /inference="COORDINATES: protein motif:HMM:NF026115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyketide synthase dehydratase
                     domain-containing protein"
                     /protein_id="HEY0728325.1"
                     /translation="MCRVNDAPMKAAACTVSNGTRIISDPEHELYGRVLFHRGRFRRL
                     REYRALRATECSAEIMPDGTTAWFGQYLPGGLVLGDPGARDAAIHAVQACVPQITLLP
                     VGVEKITGSLNGQSGELFVRAQERERFANGFVYDVELSDTEGRVRERWERLHLRAING
                     AEFEGPWPEGLLTPYVERCLMDLVPGANISIAFERDRTSDRRDRSTRAIERVLGANCV
                     VRRVDGKPQACDGREVSASHSGDLTMVVAAHGPVGCDLEVVAPRSSVVWTDLLGVERF
                     KLAEIICRETQETLDVAATRVWTSVECLKKAGAGMTAPLIFAGASANGWVLLASGELK
                     IASGVVRTDGAKEELAIALLTGGGDARV"
BASE COUNT          314 a          558 c          471 g          330 t
ORIGIN      
        1 gtgaaaaggg ctgacatagg ccacgcgcga catgtcttgc aacgatatcg gctcgcacag
       61 acgctcacgc gcgtcggtga tcacgcgctc gaccgcccgt cgatgcgacg cgatcgtgtc
      121 ttcgcgtaac gccgaaatcg agccctcttc aaacgcttcg tttctcaata cttcagccat
      181 ttgcatactc tctcaacgct tcgcgcaact gagtgggaac gggaaccggc acaacctgct
      241 cgccctcgcg ttgcatgcac gcgacttgtt gctcgccgcg agccaccagc tcttcgccgg
      301 cgtggttatg ccgccagtat tcgaacttca tcgtgatgcg gttctgggcc aactcgccga
      361 gacgcatgcg taatgtgatc tcgtcgaaag cgacgagctc ggacatgaac tcgcaagaca
      421 cgcgtgtggt gacgagcacg agtccgtgct tgagtgcttc gatcacgtcg ggcgcgcggt
      481 cacgcagaaa catctcgcga cagcgtccct gccagcgcac gtggttcgcg tagtagacgt
      541 ttccgatcag gttcgtctct tcaaacccga caacgtgccg gtattcatac gcgcgcatct
      601 ccgcctcccg ttagcaacgc aattgccagt tcctctttcg cgccgtccgt ccttacgacg
      661 cccgacgcga tcttcaattc gccggacgcg agcaagaccc aaccgttagc ggacgcgccc
      721 gcgaagatga gaggcgcggt catgccggcg ccagctttct tcaggcactc aactgacgtc
      781 cagacgcgcg tcgctgctac gtccaatgtc tcttgtgttt cgcggcagat gatctcggcg
      841 agtttgaatc gctcaacgcc gagcagatcg gtccagacta ccgatgatct cggtgcgacg
      901 acttcgagat cgcaaccgac cggaccgtgt gcggcaacga ccatcgtgag atcgccggag
      961 tgtgacgcgg acacctcgcg cccgtcgcaa gcttgtggtt ttccatcgac gcgcctgacg
     1021 acgcagttcg caccgagcac gcgctcgatt gcacgtgtgc tgcgatcgcg gcgatccgat
     1081 gttcgatcgc gctcgaaggc gatcgaaatg ttcgcgccgg gaaccaggtc catcagacat
     1141 cgttccacgt atggcgtcag caaaccttcg ggccacggac cttcgaactc cgcgccattg
     1201 atcgcgcgca agtgcagccg ttcccaacgc tctcgcacgc ggccttcggt atcgctcaac
     1261 tccacgtcgt acacgaaccc gttcgcgaag cgctcacgct cctgtgcgcg cacgaacagt
     1321 tcgccgcttt gtccgttcag actgccagtg atcttctcga cgccgacagg caagagcgtg
     1381 atctgcggta cgcacgcctg gaccgcgtga attgccgcgt cgcgcgcgcc cggatctccg
     1441 agcaccaaac caccgggcag atactggccg aaccatgcgg tcgtgccatc cggcatgatc
     1501 tcggcgctgc actccgtagc cctgagcgcg cgatactcgc ggagacgtcg aaagcgtccc
     1561 cgatggaaca gcacccttcc gtaaagttcg tgttccggat cgctgatgat gcgcgtgccg
     1621 ttactgacag tgcaggccgc ggctttcatc ggcgcgtcgt tcacgcgaca cat
//
LOCUS       DASWTX010000631         2503 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_359002, whole genome shotgun sequence.
ACCESSION   DASWTX010000631 DASWTX010000000
VERSION     DASWTX010000631.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2503
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_359002"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            432..1619
                     /locus_tag="VGD38_09675"
     CDS             432..1619
                     /locus_tag="VGD38_09675"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HEY0728326.1"
                     /translation="MIAILVLCVSAAGAAVYVWMYGNPFKNVAQMNYPAGARFISFEG
                     DVRVVRAATRETIPANSDTQLYPGDTVQTQASGRARIGLADGSTLVIKPNSTIIVRDN
                     ARADDGKRTNVHVKVDSGQLSVRTEQQSDGTTNVVETPKTKSTMSQSTSASFGVNPEG
                     TEEIRVSTGAIETTNRSGEKTAIRGGEYVSVNNSGRLSAAQKLLDVPQPATPHDLEKV
                     FVGTNGAASVALKWQRPQSGTPSYYRVEVATSPFFVTDGKVIERDQLQATELAASDLR
                     PGVYFWRVRATASTGQMSDWSDPLKFIVATRGTGSQVGVSNLTAELLGGSLYLVRGRA
                     EPGTTIRVSGRETIVNPDSSFQIQLVVPGGIREITVEAQDPQGNSSQYKVALSGRTAR
                     GRT"
     gene            1638..>2503
                     /locus_tag="VGD38_09680"
     CDS             1638..>2503
                     /locus_tag="VGD38_09680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728327.1"
                     /translation="MSSHVILLTDAHEAPAYELIEALRQAGVKTLIEGLREVEVEVAL
                     AEQQKHHGGLSDLDGPPPLAVLYEVVPGADMVELHTAINHAKAFWPGAPLVACRRQMN
                     GYQSLNLRSLDGATLKRLGFLAIADKSAQLPALLREIEGQGASGELRLPEIVERPAGR
                     GCSSLPPKIKFNDLRAAFDLVASLHFISDQSGAATTALAGLEQLISADRWAIYLFSEE
                     KGVESSTLEAIAVRRPGQHGTGSRSEEEWRRVLTGEADLPIGSESKAVKRAAAGMGII
                     KRKERGQFVLAVP"
BASE COUNT          531 a          744 c          739 g          489 t
ORIGIN      
        1 catcggtttc cacatcccga tctggttctc gctggccttt gtcgccctgg ttttaatcgg
       61 ttccgtggtg gcctcactga taattccggc caagcccgaa accacgattg aggtcgattt
      121 accacccgat ttcttgaggg atgagtcaat tcccgccgaa taagtgcgaa aaaaccgctc
      181 gacattaaac atgttgaacg ttttcgcttc cctgtgctaa attcctgaac tggtagtgtt
      241 gctgcctgga attggcaggt tttcacctgc cggactcaca cacctaacaa cgtgcggctc
      301 aagcccttag ccgaaccgcg ctgatctcaa cccgaggttg gaccccctcc acgaatagaa
      361 acatggtggc gaataggacc agtcgctttg cctatgattg gtggattatt cagaagcgtt
      421 ttgtctatct gatgatcgcc atactcgttc tctgcgtttc cgccgcaggc gccgcggtct
      481 acgtctggat gtacggcaac cccttcaaaa acgtggcgca gatgaattat cccgccggcg
      541 cccggttcat ttcttttgaa ggcgacgtcc gcgtcgtccg ggcggccacg cgcgagacaa
      601 tccccgctaa ctccgacacg cagctttacc ccggcgacac ggtgcagacg caggccagcg
      661 gccgcgcccg catcggcctc gccgacggtt cgacgctcgt tatcaaacca aacagcacca
      721 tcatcgtgcg cgacaacgcg cgcgctgacg acggcaaacg aaccaacgtg cacgtcaagg
      781 tcgacagcgg acagctctcg gtgcggactg agcagcagtc ggacggcacc acgaacgtcg
      841 tcgaaacgcc gaagacgaag agcacgatga gtcagagcac gagcgcgagt ttcggagtca
      901 atcctgaagg cactgaagaa attcgcgtct cgaccggtgc gatcgaaacg acaaaccgct
      961 ccggcgagaa gactgcgatt cgcggcggtg aatacgtttc agttaacaac tccggccgtc
     1021 tctccgccgc gcagaagttg ctcgacgttc cgcagccggc cacgccgcac gatctcgaaa
     1081 aagtttttgt cggtaccaac ggcgctgcga gcgtcgcgtt gaagtggcag cggccgcagt
     1141 caggaacgcc ttcttattac cgcgttgaag tcgcgacgtc tccgttcttc gtcactgacg
     1201 gaaaagtcat cgaacgcgat cagctacagg cgactgagct ggccgccagc gatctgcgtc
     1261 cgggagttta cttctggcgc gtgcgtgcaa ctgcctcgac cggtcagatg agcgactgga
     1321 gcgatccgtt gaagttcatc gtggcgacac ggggaacggg ctcgcaggtt ggcgtttcaa
     1381 atcttacggc cgaacttctc ggcggcagtc tttatctcgt tcgcggccgt gccgaacccg
     1441 gcacgacgat cagggtcagc ggacgcgaaa cgatcgtcaa tcccgatagt tcgtttcaaa
     1501 ttcagttggt ggtgccgggc gggattcgcg agatcacggt cgaagcgcaa gacccgcaag
     1561 gcaacagtag tcaatacaaa gtcgcacttt ccggccgcac cgcgcgcggc cgaacctgag
     1621 tcggagacct aacgagcgtg tcgagtcacg taatcctatt gactgatgct catgaagcac
     1681 cggcctacga gttaatcgag gcgttgcggc aggctggtgt gaaaactctg atcgagggtc
     1741 tgcgcgaagt ggaagtcgaa gtggcgctgg cggaacagca gaagcaccac ggcggacttt
     1801 cggacctcga tggtccaccg ccgctcgccg tgctttacga agtcgtgccg ggcgcggaca
     1861 tggttgagct gcacacggct atcaaccacg cgaaagcgtt ttggccgggc gcgccgctgg
     1921 tcgcgtgccg ccggcaaatg aacggctacc aaagtttgaa cctgcgcagt ctcgacggcg
     1981 caacgttaaa acggctcggt tttctcgcga ttgcggacaa atcggcccaa cttcccgcgc
     2041 tgctgcgtga gattgaaggc cagggcgcgt cgggtgaact acggctgccg gagatcgtcg
     2101 aaagacctgc cggacggggt tgctcttcac tgccgcccaa gatcaaattc aatgatttac
     2161 gcgcggcgtt cgatctcgtc gcgtcgcttc acttcatcag cgatcaaagc ggcgccgcga
     2221 ccaccgcgct cgccggactc gaacaactga tcagcgctga ccgttgggcc atctatttgt
     2281 tctcggaaga aaaaggcgtc gagagctcga cactcgaagc gatcgcggtt cgccgtccgg
     2341 gccaacacgg cacgggcagt cgcagcgaag aagaatggcg tcgcgtgttg acgggcgaag
     2401 cggatcttcc gatcggttcc gaaagcaaag ctgtgaaacg cgcggcggcg ggaatgggaa
     2461 tcatcaagcg taaagagcgc ggccagttcg tgctcgctgt gcc
//
LOCUS       DASWTX010000632         4028 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_293022, whole genome shotgun sequence.
ACCESSION   DASWTX010000632 DASWTX010000000
VERSION     DASWTX010000632.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4028
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293022"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..180)
                     /gene="eno"
                     /locus_tag="VGD38_09685"
     CDS             complement(<1..180)
                     /gene="eno"
                     /locus_tag="VGD38_09685"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016387099.1"
                     /note="catalyzes the formation of phosphoenolpyruvate from
                     2-phospho-D-glycerate in glycolysis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEY0728328.1"
                     /translation="MSLIEHVQAREILDSRGNPTVEAEVVLAEGEIGRAAVPSGASTG
                     EHEAVELRDGDKSRRG"
     gene            complement(149..1570)
                     /locus_tag="VGD38_09690"
     CDS             complement(149..1570)
                     /locus_tag="VGD38_09690"
                     /inference="COORDINATES: protein motif:HMM:NF013741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HEY0728329.1"
                     /translation="MDELPSIWLGLLFAEGETALPPTSTAATLIKLFSVLLLVGANGF
                     FVAAEFALVGLRPSRIETLAAAGSRSAKRLLELLRNLNSYLSACQLGITLASLGLGWI
                     GEPAIARLLEGPLAGRVSDWWRHTIAFVIAFVIITSLHIVLGEQAPKLIGLAVAERVA
                     LAIALPMQIFYKVASWPIRALDWASARTVQLVGIKATAEHASTYTEEELRRLVDISRE
                     SGHLRAEERRLIHRVFEFSDTLVREAMVPRTEMAAIPNTCSLEEITKAFEQHRYSRLP
                     VYRESFDDVVGFIHSKDVMPYLMHPEKFKLEDVLQPPLYVVDTARLEHVLRQMQKAKM
                     HFGFVVDEHGGLEGIITLEDLLEEIVGEISDEHDEEVNEQITEVDNHTFVLAGGLAVR
                     DLNRRLKTSVPESETYTTIGGFLMTEAGHVLKPGEVVTYDGLVFHVERVEKRRVMRVT
                     LQILETNGEGELKDEFDRARSGA"
     gene            complement(1670..2218)
                     /locus_tag="VGD38_09695"
     CDS             complement(1670..2218)
                     /locus_tag="VGD38_09695"
                     /inference="COORDINATES: protein motif:HMM:NF044704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CarD family transcriptional regulator"
                     /protein_id="HEY0728330.1"
                     /translation="MVGFKVGQKVVYPNHGIGTIEQIEQKQIGATLLPFYTLRLAANN
                     SLVLVPVSNASEVGLRAPISSGECDMLFKALADDFSSPANDWKDRFKEFSEKMRTGDI
                     FEVAEVLKHLTYLSTLKPLSFREQRMLERSRYLVVSELAAVCRQPECNIEPRVDQALA
                     RARAKHDRRPVRTRAAGAAAGH"
     gene            complement(2392..>4028)
                     /locus_tag="VGD38_09700"
     CDS             complement(2392..>4028)
                     /locus_tag="VGD38_09700"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0728331.1"
                     /translation="PAATEDSADGSISGSVVNESGQPLANVRVTVREVAGTAGRTSTT
                     DAEGNFRFAGLVPSLYLLSASYPAYVTQSGDAVWPFNHYRLGDTVRLEMVRGGVITGT
                     VLNGAGEPVIGVRVRAVMIRNAKGEAPRIGGGVALERTTDDRGVYRLFGLAGGTYVVS
                     AGGSAVSQSFNLNPYDLDLPTYSPSSTRDTAAEITLRSGEEITADIRYRGEAGHTISG
                     SMKLVGMTNGSVTLTPAGSVVPIANAFQMPGAVGFEFPGLADGEYDIVANEVKPPVSP
                     TGAPPDTLMSEPKRVVVKGADVTGLELVPRPLPSISGRVTLEPAKVAACEGKRRPLFA
                     EMLVTLQRPDKESSEKENLPYLRLVAMPASPDANGSFVLRNLAPGRYLFDPRFYARYW
                     YLSSISIAATPKTDPAANWTTLKFGEQITNVTITLAEGAASIRGRLKTAENSETPSGY
                     GVYFFPAEREKTADVLRHFVTTVEADGTFAVNNLPPGRYLALVQPLDAQTNTLARLRL
                     PESAEARTKLRRAAESQKTNLELKPCQNLTDFELKK"
BASE COUNT          871 a         1180 c         1117 g          860 t
ORIGIN      
        1 gccgcggcgg cttttgtcac catcacgcag ctcgacggct tcatgctcgc cggtcgaagc
       61 gcctgaaggc accgcggcgc gtccgatttc accctcggcc agaacgactt ccgcttcgac
      121 cgtcggatta ccacgcgaat ccagaatctc acgcgcctga acgtgctcga tcaaactcat
      181 cctttagttc cccttctccg ttagtttcaa gaatctgcag cgtaacgcgc atcacgcggc
      241 gcttctcaac gcgctcgacg tgaaagacca gcccatcgta cgtcactacc tcaccgggct
      301 tcagtacgtg cccggcctca gtcatcagaa aaccaccgat cgtcgtgtac gtttccgact
      361 ccggaacgga agtcttcaaa cgccggttca gatcgcgcac cgccaaacca ccggccagca
      421 caaacgtgtg attatccact tcggtgatct gctcgttcac ttcttcgtcg tgttcatccg
      481 agatctctcc cacgatttct tccaacaggt cctcaagcgt gatgatgcct tcgaggccgc
      541 cgtgctcgtc gaccacaaaa ccgaaatgca tcttcgcttt ctgcatctgc cgcaggacgt
      601 gttcgagccg cgcggtgtcg acgacgtaaa gcggcggttg cagcacgtct tcgagtttga
      661 acttctccgg atgcatcagg tacggcatca cgtctttgct gtgaatgaaa ccgactacat
      721 cgtcgaacga ctcgcgatag acaggcagac gcgaataccg gtgctgctcg aaagctttcg
      781 tgatttcttc gagcgaacag gtgttgggaa tcgcggccat ttctgttcgc ggcaccatcg
      841 cttcgcgcac cagcgtgtcg gaaaactcaa acacacgatg aatcaagcgc cgctcttccg
      901 cgcgcaggtg tccactctcg cgcgagatgt cgaccagccg tcttaattct tcttcagtgt
      961 aagttgaagc gtgttcggca gtcgctttga tgccgacgag ctgcaccgta cgcgcgctcg
     1021 cccaatcgag cgcgcggatc ggccaactgg cgaccttgta aaaaatttgc atcggcaacg
     1081 cgatcgccaa cgcgactctt tcggcaacgg ccaggccgat cagtttcggc gcctgttcgc
     1141 ccaggacaat gtgcaacgac gtgatgatca cgaacgcgat cacaaacgcg atcgtgtgtc
     1201 gccaccagtc ggaaacgcgt ccggccagcg gaccttccaa aagtctcgcg atggcgggtt
     1261 caccgatcca gccgagcccg agcgatgcga gtgtgattcc gagttggcac gccgaaagat
     1321 acgagttgag gtttctgagc agttccaaca gccgtttcgc gctgcggctt ccggcagcgg
     1381 cgagcgtctc aatccgcgaa ggacgaaggc caacaagcgc gaactccgcg gcgacaaaga
     1441 agccgttcgc gccgaccagc agcagaactg aaaagagttt tatgagtgtg gcggcggttg
     1501 acgtgggagg aagagctgtt tcgccttcag cgaatagtaa accgagccag atacttggta
     1561 gttcgtccat tctgaggtgg acgggaataa taccacgaag gctggacaca gatcaggtgg
     1621 taagccgttc gcaggaacag cttcatcaca aatccttgct ggcagttaac taatggccgg
     1681 cagcggctcc ggctgctcgg gttcggacag ggcgcctgtc gtgtttggca cgggcgcgag
     1741 cgagcgcctg atcgacgcga ggttcgatat tgcactccgg ttggcggcaa actgcggcca
     1801 actctgagac caccagataa cgtgaacgtt cgagcattct ctgctcgcga aaagagagtg
     1861 gtttgagtgt actcagataa gtcaggtgtt tgagcacctc ggccacttca aaaatgtcgc
     1921 cggtgcgcat cttctctgag aattccttaa agcgatcctt ccaatcgtta gcgggggagg
     1981 aaaaatcatc tgctagtgct ttgaaaagca tgtcacactc acccgatgag attggggctc
     2041 gcaggccaac ttctgaagca tttgaaaccg gtactaagac cagggagttg ttagcagcaa
     2101 gacgaagcgt atagaaaggt aggagagtag cgcctatctg cttctgttct atttgctcga
     2161 tggtcccgat tccatgattc gggtaaacga ctttctggcc gactttgaag cccaccatgc
     2221 acctccatcg aatttgaaac atcagactgc gccgcacgcg caggcttggg gaattaaaac
     2281 gagtgacgcg ggttgcgtcg gaagccctag ttggtaagta gttgaagtct agcaagcgat
     2341 cttgcgaagc gtcaacccga ataggttata tgtccaataa gtccttagga cctatttctt
     2401 caattcaaag tccgtgaggt tttggcaggg ttttagttcg agattggttt tctgcgactc
     2461 ggctgcacgg cgcaattttg ttcgtgcttc ggcggattcc gggagccgca gcctggcgag
     2521 cgtgttcgtt tgggcgtcga gcggttgcac gagcgcgagg taacggccgg gcggcaaatt
     2581 gttgacggca aacgtgccgt cggcctcgac agtcgtcacg aaatgacgca gcacgtcggc
     2641 tgttttttcg cgttcggcag gaaaaaaata gacaccgtaa cccgacggtg tttcgctgtt
     2701 ttccgcggtt ttcaaacggc cgcgaattga cgccgcgcct tccgcaagcg tgatcgtgac
     2761 gttagtgatc tgctcgccaa acttgagcgt cgtccagttt gcggccggat ctgttttcgg
     2821 cgtggcggca atactgatcg aactcagata ccagtaacgc gcatagaagc gtggatcgaa
     2881 caggtaacgg ccgggcgcaa gatttcgcag cacaaagctt ccgtttgcat ccggcgaagc
     2941 cggcatcgca accagccgca ggtacggcag attttctttc tcgctacttt ccttatccgg
     3001 ccgctggagt gtcacaagca tctccgcgaa cagcggccgc cgtttaccct cacacgcagc
     3061 aactttcgcg ggttcgagcg tgactcgacc actgatcgac ggcaacggcc gcggcaccaa
     3121 ctccagtccc gtcacgtcag cgcctttgac cacaacacgc ttcggctccg acatcaacgt
     3181 gtccgggggt gctcctgtag gtgacactgg tggtttcacc tcattcgcaa cgatgtcgta
     3241 ttcgccgtcg gcaagtcccg ggaattcaaa accaacagcc ccgggcattt gaaacgcatt
     3301 tgcgattgga accacgctgc ccgcgggcgt caacgttacc gaaccgttcg tcatgccaac
     3361 aagtttcatc gaaccactga tggtatggcc cgcttcacct cgataacgaa tgtcggcagt
     3421 gatctcttcg ccgctgcgca gagttatctc cgcggccgtg tcgcgtgttg aggagggcga
     3481 gtaggtcggg agatcgagat cgtatggatt gagattgaac gactgcgata ctgctgatcc
     3541 accggcacta accacatacg taccgccagc caaaccaaac aggcggtaga caccacgatc
     3601 gtctgtcgtt cgctctaaag cgacgccgcc gccgatgcgc ggagcctctc cttttgcatt
     3661 gcggatcatc acggcgcgaa cgcgcacacc gatcacgggt tctcccgctc cattgagaac
     3721 cgttcccgtg atcacgccgc cacggaccat ctcgagccgt accgtgtcgc caaggcgata
     3781 gtgattgaac ggccagacag cgtcgccgga ctgcgttacg taagcgggat acgacgccga
     3841 aaggagatac agcgaaggga cgagtccagc gaaacgaaag tttccttccg cgtcggtagt
     3901 cgacgttcgg ccggcggtac ccgcgacttc ccgaaccgtt acacggacgt tcgcaagcgg
     3961 ttgtccactt tcattcacga ccgaaccact gatgctccca tccgccgaat cttcagttgc
     4021 ggccggcg
//
LOCUS       DASWTX010000633         2220 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_419456, whole genome shotgun sequence.
ACCESSION   DASWTX010000633 DASWTX010000000
VERSION     DASWTX010000633.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_419456"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..568
                     /locus_tag="VGD38_09705"
     CDS             <1..568
                     /locus_tag="VGD38_09705"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HEY0728332.1"
                     /translation="DSVSLDPHKWLYVPVDAGCLLFRDAAAAAVFTEDAAYIQTHGLA
                     EDATFAYWDYGVELSRRFRALKVWLTLGYYGARRIAEAVSKDIALAAYLGELVSNADD
                     FELLAPVELSICCFRYVPKNAQESDLNQLNEKIMSAVQKGGRAYVSNATVNGKFALRA
                     CITNFRTTKADIEETLRVVRDAAKTINE"
     gene            561..1406
                     /locus_tag="VGD38_09710"
     CDS             561..1406
                     /locus_tag="VGD38_09710"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF012673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008441 - 3'(2'),5'-bisphosphate
                     nucleotidase activity [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HEY0728333.1"
                     /translation="MSNYDQELTAAVDLARAAGNSILAQYEKPLRVETKSHDDDIEPV
                     TQADRIANELIVNGLKAQFPRDGILAEESVDTERRLSKSRVWMVDPLDGTNGFIDGNG
                     DFAVQIGLVENGEPVVSVVYLPLSRVMYRAITGGGAWIERPQRETEQAAVSDRRTFAT
                     MRLAASRSHRSPRMNKVVQRFGFREEVQRGSVGIKVGLLVEQQCDVYIHLSPRTKQWD
                     TCAPQLILTEAGGRLTDLFGQPLNYNVPDVNNRNGLVASNGVSHELIIETLAPLLAEF
                     GRKAV"
     gene            1422..>2220
                     /locus_tag="VGD38_09715"
     CDS             1422..>2220
                     /locus_tag="VGD38_09715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728334.1"
                     /translation="MRQKPFLTYFAICAVPLLLLAALNYWNGIRSVDATANTIVQDDL
                     QAFTAGINQMLDEQGNAVLTLAVAPDKQQAAVNLAPGYFKNVTIYDRNHQPIQSTLGP
                     PPTIPDDRVWTTQGNVLLERIIQDGSNKTAFEFSVPIHNQSGLGNEGAVVAIVDLQRL
                     FATPARLLKTSSASSAAGVSIVVRDNSGNVIYQSDSPAAETSGATASAPMPRLNANIA
                     VTRNTAEFVSSAHRWGFAGIVFALLLALPAAYLLNRHLQKHTRGLAHI"
BASE COUNT          479 a          677 c          634 g          430 t
ORIGIN      
        1 cgattcagtt tcgctcgatc cgcacaagtg gctttacgtt ccggttgacg ccggttgttt
       61 gctgtttcgc gacgcagccg cggccgctgt tttcaccgag gacgccgctt acatccaaac
      121 acacgggctt gccgaggacg caaccttcgc ttactgggat tacggcgtcg aactgtcgcg
      181 gcgctttcgc gcgctgaaag tgtggctgac actcggttat tacggcgcgc gccgcatcgc
      241 ggaagctgtc agcaaagaca tcgcgctcgc ggcgtatctc ggcgagctgg tttcgaacgc
      301 cgacgacttc gaactgctcg cgccggtcga attgagcatc tgttgttttc gttacgtgcc
      361 caaaaacgca caggaaagcg acttaaatca gttaaacgaa aagatcatga gcgcggtgca
      421 aaaaggcggg cgggcgtacg tgtcgaacgc gaccgtgaac gggaagttcg cgttgcgcgc
      481 gtgcatcaca aactttcgca cgacgaaagc cgacatcgag gaaacgttgc gagttgttcg
      541 cgacgccgcc aaaacaatca atgagtaatt acgatcaaga gctcacggcc gcggtcgacc
      601 tggcgcgcgc ggccggcaat tccattctcg cgcagtacga aaagccgctg cgcgtggaaa
      661 cgaaaagcca cgacgacgat atcgaaccgg tcacgcaagc ggatcgcatc gcgaacgagc
      721 tgatcgtcaa cggattgaaa gcgcaattcc cacgcgacgg catcctcgcc gaagagtcgg
      781 tcgataccga acgtcgcctg agcaaatcgc gcgtgtggat ggtcgatccg ctcgacggca
      841 ccaacggttt catcgacggc aacggcgact tcgccgtgca gatcggtctg gtggaaaacg
      901 gcgaaccggt tgtttccgtt gtttacctgc cgctgtcgcg tgtgatgtat cgcgctatca
      961 cgggcggcgg tgcgtggatc gaacgcccgc aacgcgaaac cgagcaagcc gcagtttccg
     1021 atcgccgaac cttcgcgacg atgcgcctcg cggccagcag atcgcatcgc agtccacgca
     1081 tgaacaaagt cgtgcagcgg tttggttttc gcgaagaagt gcaacgcggt tcagtcggca
     1141 tcaaggtggg actgctcgtc gaacagcaat gcgacgttta cattcacctg tctccgcgca
     1201 caaaacagtg ggacacgtgc gcgccgcagt taatcctgac ggaagccggc ggacggctga
     1261 cagatctctt cggccagccg ttgaattaca acgtcccgga cgttaacaat cgcaacggtc
     1321 tcgtcgcgag caacggcgtc tcgcacgagc tgattatcga aaccctcgcg ccgctgctgg
     1381 cggaattcgg cagaaaagcg gtttaatctc ctgcgttccc catgcgtcag aaaccctttc
     1441 tcacctattt tgcgatctgc gccgtgcctc ttttactgct cgcggcgctc aactactgga
     1501 acggtatccg ctctgtagac gcgaccgcca acacgatcgt gcaggacgat ctgcaagcgt
     1561 tcaccgccgg cataaatcaa atgctggacg agcagggtaa tgcggtgctg acactcgcgg
     1621 tggcgcctga caaacaacag gcggcagtca acctggctcc gggctacttt aaaaacgtca
     1681 cgatctacga tcgcaaccac cagccgattc agtccacgct cggtccgccg ccgacgatcc
     1741 ctgacgaccg tgtgtggacc acgcagggca acgtcctgct ggaacgtatt atccaggatg
     1801 gttccaacaa gaccgctttt gagttctccg taccgattca caaccaaagc ggtcttggga
     1861 acgagggcgc agtcgtagcc atcgtggatc tgcaacgact gttcgccacg ccagcacgcc
     1921 ttttgaaaac aagttcggcg agcagcgcag cgggagtgtc gattgtcgtt cgcgacaact
     1981 cgggaaacgt gatctaccag tctgattcac ccgcggccga gacctccggc gcgactgctt
     2041 cagcgccgat gccgcgtttg aacgccaaca tcgccgtcac gcgcaacacg gctgaattcg
     2101 tatcgagcgc gcatcgctgg gggtttgccg gcatcgtgtt cgcgctgctg ctcgctctgc
     2161 ccgcggctta cctgctcaat cgacacttgc aaaaacacac acgcggtctc gcgcacatca
//
LOCUS       DASWTX010000634         2356 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_202414, whole genome shotgun sequence.
ACCESSION   DASWTX010000634 DASWTX010000000
VERSION     DASWTX010000634.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2356
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202414"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(13..>2356)
                     /locus_tag="VGD38_09720"
     CDS             complement(13..>2356)
                     /locus_tag="VGD38_09720"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0728335.1"
                     /translation="AANSSIFSIVNAVILKPLSFKDPNQLVWIWAQRKTVSRAFFSIP
                     NFVDTRDQNQTLAELAPFAIWPANLTGHGEAERLQGVRISANAMQMLGVEAAAGRTLV
                     PEDDNSNNTRVVMLSHGLWQRRFGGASDALGKTLTLNGDSYTIVGVLPPRFVVPNAET
                     EIMVPLRMDRDPRRTERGSNFLRLVARLKPGVTPAQAEADLAAISNRLRDLYPNDNGN
                     LTAPRVLKLQDEVVGGYREGLWLILAAVVVVLLIACANLASFQLARAALRHKEMAIRA
                     ALGARRKVLMRQVLSESMLLAVLGGALGLLLSFWAKDLLLALSPADFPRASAVSIDGR
                     VLLFSLLVTLFAGLALGIAPAIQHTRSDLNSDLKEGGRDALGETRNRVRSVFIVSEIA
                     LSLMLLVAAGLLLKSFGQLRGVNPGFDANHVLAVRLSLPAARYSNGASVKTFYDKIAP
                     RIGALPGVEGVSAASALPLSGLIARTTFNIAGRASVSPGETPFAQHRWVGPGYFETMK
                     IPIVRGRDITDSDNENAAGAIIIDQALQRQYFGDQDPLGAHVLINMGDGNPPREYEVV
                     GIVDNVKHMGLTDEPMPTLYGPIPQAPKSAVPFMANNLSLVVRTGIEPEALASTVRKE
                     LRNVDVDVATAGVRPMHQFLAASVAARKFNLGLLGVFAVTALLLAAAGLYAVIAYLVS
                     QRTREIGIRLALGATPRHVLRLMMGQGRRLTLIGVAIGFVGAIAVTRLMRSLLFGVAP
                     TDLMTLGIASVVLVAVALLACFVPARRATKVDPLVALRHE"
BASE COUNT          517 a          753 c          659 g          427 t
ORIGIN      
        1 ggtccataag tctcactcat gtctcagcgc tacgagtgga tcgacttttg tggcgcggcg
       61 tgccggaaca aagcacgcca gcaaagcgac ggcgaccaaa acaacagacg cgatgccaag
      121 cgtcatgaga tcggtcggcg ctactccaaa caaaaggctc ctcatcaaac gtgtgacggc
      181 gatcgctcca acaaaaccga tcgcgacacc tatcagcgtc aatctccgtc cctggcccat
      241 catcaaacgc aggacgtgtc gcggcgtcgc gccgagtgcg agacgaatcc cgatctctct
      301 cgtgcgttgc gagaccaaat aggcgatcac ggcatacagt cccgcggccg ccagcagcaa
      361 tgccgttact gcaaagacac ccaataatcc cagattgaac ttgcgcgcgg ccaccgacgc
      421 agcgagaaac tggtgcatcg gcctgacacc cgctgtcgcg acatcgacgt ccacgttgcg
      481 cagctctttg cgcacggtcg acgcaagtgc ttcaggttct atcccggtgc gtacgacaag
      541 gctgaggtta tttgccatga acggcaccgc ggatttcggc gcctgcggaa tgggaccgta
      601 gagcgtcggc attggttcgt ccgtcaggcc catgtgcttg acgttgtcga caatgccgac
      661 gacttcatac tcgcgcggcg gatttccgtc gcccatgttg atcagcacgt gcgcacccaa
      721 cggatcctga tcgccgaagt actgacgctg cagcgcctga tcgatgatga tggcgcccgc
      781 cgcgttctcg ttatcgctat ctgtgatgtc gcgtccgcgc acgatcggga tcttcatcgt
      841 ttcaaagtag cctggtccaa cccagcgatg ctgcgcgaac ggtgtttcac cgggactgac
      901 cgaagcgcgg ccggcgatgt tgaatgtcgt ccgcgcgatc aatccgctca gcggcaacgc
      961 actcgctgca ctcacacctt ccactcccgg cagcgcacca atgcgcggcg cgatcttgtc
     1021 gtagaacgtc ttcactgacg caccgtttga ataccgcgcc gcgggcaacg acaaacgcac
     1081 ggccagcacg tggttcgcgt cgaaccccgg gttgactcca cgcagctgac cgaaactctt
     1141 caacagcaaa cccgctgcaa ccagcagcat caacgaaagc gcgatctcgc tcacgataaa
     1201 cacactgcga acacgattac gcgtctcacc cagcgcatcg cgtccacctt ctttcaggtc
     1261 agagttgaga tcgctgcggg tgtgttgaat cgcgggcgcg atgccgagtg cgagccccgc
     1321 aaacaacgtg acaagcagcg aaaagagaag cacacggccg tcgatactca ccgcggacgc
     1381 gcgcggaaaa tccgcgggac tcagcgccaa caacagatcc ttggcccaga acgaaagcag
     1441 caaccccaac gcgccgccca gaaccgcgag caacatgctc tcgctcagga cctggcgcat
     1501 caggaccttg cgcctcgcgc ccaaagcagc gcgaatcgcc atctccttgt gccgtaacgc
     1561 cgcgcgcgcc agttgaaagc tcgcgaggtt tgcgcacgcg atcagcagca ccacgaccac
     1621 ggccgcgagg atcagccaga gtccttcgcg ataaccaccg acgacctcat cctgcaactt
     1681 caacacgcgc ggcgcggtga ggttcccgtt gtcattcgga taaagatcgc gcaggcgatt
     1741 actaatcgcg gcaagatcgg cctcggcctg agctggagta acgcccggtt tgagccgtgc
     1801 gaccagccgg agaaaattcg agcctcgttc ggtgcggcgt ggatcacggt ccatacgcaa
     1861 cggcaccatg atctcagtct cggcgttggg aacgacgaag cgcggcggca acactccgac
     1921 gatggtgtac gagtcgccgt taagcgttaa cgttttaccg agtgcgtcac tcgcgccgcc
     1981 aaaacgtctc tgccataagc cgtggctcag catgacgacg cgagtgttgt ttgaattgtc
     2041 gtcctcaggc acaagcgtgc gcccggcggc agcttcgacg cccagcatct gcatcgcatt
     2101 cgccgagatt cgcacgccct gcaaacgttc ggcttcgccg tgtccggtca ggttcgcggg
     2161 ccaaatcgcg aatggcgcga gttcggcaag cgtctggttt tggtcgcgcg tgtcgacgaa
     2221 attgggaatc gagaagaacg cacgactgac ggttttgcgt tgtgcccaaa tccataccaa
     2281 ttgatttggg tccttgaacg acaagggctt caagatcaca gcgttcacga tactgaatat
     2341 cgagctatta gcagct
//
LOCUS       DASWTX010000635         3888 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_380061, whole genome shotgun sequence.
ACCESSION   DASWTX010000635 DASWTX010000000
VERSION     DASWTX010000635.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3888)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3888)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3888
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_380061"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..423
                     /locus_tag="VGD38_09725"
     CDS             <1..423
                     /locus_tag="VGD38_09725"
                     /inference="COORDINATES: protein motif:HMM:NF021363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2062 domain-containing protein"
                     /protein_id="HEY0728336.1"
                     /translation="GVFIAFSPFLGLHTIMATAIAFLFRFNKIAIYTGTFINNPFFTL
                     VPIIIISYAVGAFVLGRPLGLPDEGLELLKNPQIFSGDYYRRLFIESWNIVWPFSVGA
                     TVLSVVCSVLAYPLTLRALRAYRKRKETTEYTESTEQN"
     gene            429..2258
                     /locus_tag="VGD38_09730"
     CDS             429..2258
                     /locus_tag="VGD38_09730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728337.1"
                     /translation="MKQALLITLAAMLCAGVVSSQQVQQQPRQPAQQQRPPVQQRPHT
                     SFEISEYGVDFQADPRLIVVMAALEAAGFDPVAPGRTPSAFRAKLRKDLANLDPDLRL
                     RLQNFYDRNKLPAPATAADQAARYVSLALALGPPPGLEPPPRSEDLPAGLLEVLDFAP
                     LVQEFHRRSGIDEQLVNYVRAYQAEGDRLRAPTTEMVKGLLNYLHTRPMTTSSERVEV
                     KNPDKKSKEKRYTFRQKERRFLILPDLLAPRGAINFRIIGDDYYAIVPEGTDPASSEL
                     RRAYLQYVIDALVLRFNKDIAARREPIKQLLAEREKAGAEVSADVFLSVSRSLVAAAD
                     ARFEETRRRELLANENRVRLASAKTEADKAAIAKASQAELSAIQDETIARLADEYERG
                     AVLSFFFADQLKGIESAGFDLANFFQDMIASFDPAREAKRPAEYADAKQRATAAREAR
                     LAARKAQSEVAVGSTSNPRETALVRDLAAIEDTLRNKDYNDAEARLRELLKEYPGEPR
                     IFFALGRTASLAAMDATDEPVQAERLNRALGHYRMAIAASSPEDDKAILSRSHESMGR
                     INAFLENNAEAVKSFDEAIKIGDVRGGAYRDALEGKKKLTGNP"
     gene            complement(2261..3661)
                     /locus_tag="VGD38_09735"
     CDS             complement(2261..3661)
                     /locus_tag="VGD38_09735"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family peptidase"
                     /protein_id="HEY0728338.1"
                     /translation="MNRNNFLIHLALAVVLILIAAFAGQMNRWRKQWKSHVRIIPAAE
                     KKRATTSADIALAESRLKGQAEILVKFKPGVSQAAIDALTSRFNDRVEDRIENAPGWE
                     SIDDQDDIDPTLAVAQYLAQPEVEYAEPNYAIELDAFESALPPIHPSDPRFEDQWALA
                     NSGQRGGKQGADISAMHAWLTTTGSDKVVVAVLDSGVDYTHEDLAPNMWKRPASIAPY
                     QDAQLGTIEDEDGFNAIDNAGDPMDENGHGTHCAGIIGAEGGNNLGITGVNWKVRIMP
                     LKFMNAGGFGTTKDAIEAINYVIDRKKAGVNVRIISASWGGTQRSRALQEVIQKAYEN
                     DILFVAAAGNSTVNNDRSPHYPSSYPNVLSVAALDRNDQLAKFSNWGVKSVAVAAPGV
                     DILSTWLGNAYEEKSGTSMATPVVSGIAALIVAENPRISVDQLKKRLLASTDPIVALK
                     GKTATGGRVNAAKALQ"
     gene            complement(3671..>3888)
                     /locus_tag="VGD38_09740"
     CDS             complement(3671..>3888)
                     /locus_tag="VGD38_09740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728339.1"
                     /translation="LNRDAGAIKESVEDTDFPDMALGAAEDDEMSGQMITSGWRIRLD
                     ANGKNYEYRADKNQVRLYKYKGKNYRI"
BASE COUNT          742 a         1170 c         1133 g          843 t
ORIGIN      
        1 ggcgtcttca tcgcgttctc tccctttctt ggtctccaca ccatcatggc gaccgccatc
       61 gctttcctgt ttcgcttcaa caaaatagcc atttacaccg gcacctttat caataatccg
      121 ttttttacgc tcgtgccgat catcatcatc tcctacgcgg tcggggcgtt tgtgctggga
      181 cggccgctgg gcctgccgga cgaaggtctc gaactactca aaaacccgca aatcttttcc
      241 ggcgactact accggcggct tttcatcgaa agctggaaca tcgtctggcc cttctccgtc
      301 ggcgccacgg tcctttccgt cgtttgttca gtgttggctt atccgctaac attgcgggcg
      361 ctgcgtgcct atcgcaagcg caaagagacc acggaataca cagaaagcac tgaacagaat
      421 tagcgtttat gaagcaagct ttacttatca ctctggcggc aatgctctgc gccggagttg
      481 tttcctccca gcaagttcaa caacaaccac ggcagccggc tcaacaacaa cggccgccgg
      541 tgcagcaacg gccgcacact tcgttcgaga tttctgagta cggcgtcgac tttcaggccg
      601 atccgcggtt aatcgtcgtc atggccgcgc tcgaagccgc cgggttcgat cccgtcgcgc
      661 cgggccgcac gccgtcggcg tttcgcgcca aactgcgcaa ggatctcgcg aatctcgatc
      721 ccgacctgcg tcttcgcctc cagaatttct acgaccgcaa caaactgccc gcgccggcca
      781 ctgccgccga tcaagcggcg cgttacgttt cgctcgcgct cgcgcttggt ccaccaccgg
      841 gactcgaacc gccgccgcgt tcagaagatc tgcccgcggg cttgttggag gttttggact
      901 tcgcgccgtt ggtccaggag tttcatcgcc gctccggcat cgacgagcag ctcgtgaatt
      961 acgttcgcgc ttaccaggcc gaaggcgatc gtttgcgtgc gccgaccacg gagatggtga
     1021 agggcttgtt gaactatttg cacacgcgcc cgatgacgac ctcatccgaa cgcgtcgaag
     1081 ttaagaaccc tgacaagaag agcaaggaaa agcggtacac gtttcggcaa aaggagcgcc
     1141 gcttcctgat cctgccggat ctgctggcgc cgcgaggcgc gatcaacttc cgcatcatcg
     1201 gcgacgatta ctacgcgatt gttcccgaag ggaccgatcc ggcgtcgtca gaattgcgcc
     1261 gcgcttattt gcagtatgtg atcgacgcgc tcgtgctcag gttcaataaa gacatcgctg
     1321 cgcggcgcga gccgatcaag caactgttgg ctgaacgcga gaaggccggc gctgaggtga
     1381 gtgcggacgt gtttttgagc gtgagccgtt cgctcgttgc ggcagcggat gcgaggttcg
     1441 aagagacacg ccggcgcgaa ctgctcgcga atgagaatcg cgtgcgtttg gcgtccgcga
     1501 aaaccgaggc tgataaagcc gcgatcgcga aagcgtcgca agccgagttg agtgcaattc
     1561 aggatgaaac gattgcgcgg ctggccgacg agtacgaacg aggcgcggtg ctttcgttct
     1621 tctttgccga tcaactgaaa ggcatcgaga gcgcgggatt cgatctcgca aacttcttcc
     1681 aggacatgat cgcgtctttc gatccggcgc gcgaggcgaa acgtccggct gaatatgccg
     1741 acgcgaaaca gcgcgccact gctgctcgtg aagcgcgtct ggccgcgcgc aaggcgcagt
     1801 cggaagtggc tgtcggttcg acaagcaatc cacgcgagac ggcgctcgtg cgcgatctcg
     1861 ccgcgatcga agacacgctg cgaaacaagg actacaacga cgctgaagcg cgtttacgtg
     1921 agttgctgaa agagtatccg ggtgagccgc gaatcttctt cgcgttgggc cgaacggcga
     1981 gtctcgcggc gatggatgcg actgatgagc ccgtgcaggc agaacgtctc aaccgcgcgc
     2041 tcggccatta ccgcatggcg atcgcggcct catcacctga ggacgacaaa gccatcctct
     2101 cgcgctcgca tgaatcgatg ggacgcatca acgcgtttct tgagaacaac gcggaagcgg
     2161 tgaagtcgtt tgacgaagcg atcaagatcg gcgacgtgcg cggcggcgct tatcgcgacg
     2221 ctttagaggg caagaaaaaa ttaaccggaa atccctaaaa ttattgcaag gctttcgctg
     2281 cgttaacacg ccctccagtg gcagtctttc ctttaagcgc aacgatcggg tccgtcgacg
     2341 ccagcagtcg cttcttcaac tggtccacgg aaatacgcgg attctcagcg acgattaaag
     2401 ctgcgatccc ggaaacgacc ggcgtcgcca tcgacgtgcc tgacttctct tcgtaagcgt
     2461 tcccgagcca cgtgctcaaa atatcaacac ccggcgcggc aaccgccaca ctcttcacgc
     2521 cccagttcga aaacttcgct agctgatcgt tccgatcgag cgccgcaacg ctgagcacgt
     2581 tcggatagct cgacggataa tgcggcgagc gatcgttgtt cacggtcgag tttccggctg
     2641 cggccacgaa caggatgtcg ttctcgtaag ccttttgaat gacctcttga agcgcgcggg
     2701 agcgttgcgt gccgccccag ctcgcgctga tgatgcgcac gttcacgccg gccttcttgc
     2761 gatcgatcac gtaattgatc gcttcgatcg cgtcctttgt cgttccgaaa ccgccggcgt
     2821 tcataaactt caacggcatg atgcgaactt tccagttcac gccggtgatg ccgaggttgt
     2881 ttccgccttc agcgccgatg atgccggcgc agtgcgtgcc gtggccgttc tcgtccatcg
     2941 ggtcgccggc gttgtcgatc gcgttgaagc cgtcttcgtc ttcaatcgtt ccgagttgag
     3001 cgtcctggta cggagcgata ctcgccgggc gcttccacat gttcggcgcg agatcttcgt
     3061 gcgtgtaatc gacgccgctg tcgagcactg cgacgacgac tttgtcgctg ccggtggtgg
     3121 tgagccacgc gtgcatcgca ctgatgtcgg cgccttgttt accgccacgc tgtccggagt
     3181 ttgcgagtgc ccactggtct tcaaaccgcg gatcgctcgg atgaatcggc ggcagcgccg
     3241 actcaaatgc atcaagctcg atcgcgtagt tgggctcggc gtattcaact tccggctgcg
     3301 cgagatactg cgccacggcc agggtcgggt cgatgtcgtc ctgatcgtca atcgactccc
     3361 agcccggagc attctcgatc cgatcctcga ctcgatcgtt gaaacgcgag gtcagggcgt
     3421 cgatcgctgc ctggctcacg ccgggtttga acttcacgag gatctccgcc tggcctttga
     3481 gccggctttc cgccagcgcg atgtcggcag acgtagttgc gcgcttcttc tcggcggcag
     3541 gaatgatgcg tacgtgcgac ttccactgtt tgcgccagcg attcatctgg ccggcgaaag
     3601 ctgcgataag aatgagaacg actgctagcg cgaggtggat caggaagtta ttgcggttca
     3661 ttgcggtacc tcaaatgcgg tagttcttgc ccttgtactt gtaaagacgc acctgatttt
     3721 tgtcggcgcg gtactcgtaa tttttgccgt tggcgtcgag cctgatgcgc cagccgctgg
     3781 tgatcatctg gccgctcatc tcgtcgtctt cggcggcgcc gagagccatg tccggaaagt
     3841 cagtgtcttc gactgattcc ttgatcgcgc ctgcgtcgcg gttgaggc
//
LOCUS       DASWTX010000636         2023 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_224160, whole genome shotgun sequence.
ACCESSION   DASWTX010000636 DASWTX010000000
VERSION     DASWTX010000636.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2023
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224160"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1504
                     /locus_tag="VGD38_09745"
     CDS             <1..1504
                     /locus_tag="VGD38_09745"
                     /inference="COORDINATES: protein motif:HMM:NF016071.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4214 domain-containing protein"
                     /protein_id="HEY0728340.1"
                     /translation="FGQTINGELAGSDCESPIRNTANSRADRYTFAASAGQQFAISLQ
                     SGNFNTFMTLIGPNGAVLINDDNSGGGQNSRIPGGNGMMTAGLPGTYTIEVGSVSAGQ
                     TGAYSLSLTGSSPDWQPTVLDPSQVELKSWKVDGRTFLYSKLTFPNTGFRVANWNTPT
                     QSGNDFAVDTTVEKVVNGVVALMVVSTAQIWDLGALADGNYSFTFKNSATTVKTLSFT
                     VSSTPAAPNPIDDARQFVFWQYKDFLRRDPDPPGWDHWTNEITQCSNVIFRRPGESEA
                     QCVARKRENTSAAFFVSPESQNIAYFVLRVYRGSLGRMPFFGGGSGSADEFTRDAATV
                     GEGIVVNNALDHNRINTNKQAFVNSFVTRADFKAIYDPLTNAQYVDKLFQTTGVTPSA
                     GDRQALINGLNGGGETRASVLFKVVDGTTTGAGGLLTFNTVYGKTFYDNLFNAAFVQM
                     EYFGYLQRDPDPGGFAFWLGKLNTFGDWVNAEMVKAFINSPEYRARFGAP"
     gene            1539..>2023
                     /locus_tag="VGD38_09750"
     CDS             1539..>2023
                     /locus_tag="VGD38_09750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728341.1"
                     /translation="MKTQIKLVACLVSAALLLSSSGAFGRPNNVQSIGPLAQSQDADV
                     PLRGATVQGRSQDPELTKHFRRFDVVKFDRAAAARQVKNRGRMILETSHGNFDLEFRP
                     NDLRSSDYSAQEIGADGSVHKLPKAPVTTFRASIKNNPRAQARMSVGADGLEGAIITG
                     T"
BASE COUNT          436 a          558 c          607 g          422 t
ORIGIN      
        1 attcggacaa accatcaacg gagaactcgc cggtagtgat tgtgaatcac cgatccgcaa
       61 caccgcgaac tcgcgcgcag accgctacac tttcgcggct tcggcgggac aacagtttgc
      121 gatctcgctt cagtccggga acttcaacac cttcatgacg ctgattggtc caaacggcgc
      181 ggtgttgatt aacgacgaca acagcggcgg tggacagaat tcccgcatac ccggcggaaa
      241 cggaatgatg acggccggac ttcccggcac ttacacgatc gaggtcggtt cagtcagtgc
      301 cggtcagaca ggtgcttact ctctttcgct gacgggtagt tcgcccgatt ggcagccgac
      361 agtgctcgac ccgtcacaag tggaactgaa gagttggaag gtcgacgggc gaacgtttct
      421 ctattcgaag ctgacgttcc caaatactgg tttccgggtc gcgaactgga acacaccgac
      481 gcagtcgggg aacgacttcg cggtggatac gacggtcgag aaagtcgtca acggcgtggt
      541 ggcactgatg gtcgtcagca ccgcgcagat ctgggatctc ggagcgctcg cggacgggaa
      601 ctattcgttc acgttcaaga actcggcaac gactgtgaag acgttgagct tcacggtgag
      661 ttctacaccc gcggcgccga atccgatcga cgacgcgcgc cagttcgtgt tctggcagta
      721 caaagacttt ctgcgccgcg atcccgatcc gccgggttgg gatcactgga ccaacgagat
      781 cacgcagtgc agcaatgtta tctttcgccg tccaggtgag agtgaggcgc agtgcgtggc
      841 gcgcaagcgt gaaaacacga gcgcggcgtt cttcgtctcg ccggagtcgc aaaacatcgc
      901 gtacttcgtg ttgcgtgtgt atcgcgggtc gttgggccgg atgccgttct ttggcggcgg
      961 aagtggatct gcagacgagt tcacgcgtga tgcggcgaca gttggagagg gcatcgtcgt
     1021 caacaacgca ttggaccaca accggatcaa taccaacaag caggcgtttg taaattcttt
     1081 cgtcacgcga gctgacttca aggcgatcta cgatcctttg accaacgcgc agtacgtcga
     1141 taagctgttc cagacgactg gcgtgacgcc gtcagccggc gaccggcagg cgctgatcaa
     1201 tggtttgaat ggcggcggcg agacgcgggc gagtgtgctg ttcaaagtcg tcgacggaac
     1261 cacgaccggt gcaggtggcc tactcacctt caacacggtc tacggcaaga cgttctacga
     1321 caacctcttc aatgctgcgt ttgtgcagat ggagtatttc ggctatctgc aacgcgatcc
     1381 ggatccaggt gggtttgcgt tctggctcgg caagctgaac acgttcggcg actgggtcaa
     1441 cgctgagatg gtcaaggcgt ttatcaattc gccggagtat cgcgccaggt ttggtgcgcc
     1501 ctgagttagt atttttattt aagaagtaaa gtaattcctt gaagacacaa atcaagctcg
     1561 tcgcctgtct tgtcagtgcg gccctactcc tctcttcctc gggcgcgttt ggtcggccga
     1621 ataacgtcca aagcattggc ccgctggcac agtcgcagga tgcggacgtg ccgcttcgcg
     1681 gcgccactgt tcagggacgc tcgcaagatc cggagcttac gaaacacttc cgccgctttg
     1741 acgtggtgaa gttcgatcgc gccgcggctg cgagacaggt gaagaaccgc ggcagaatga
     1801 ttctcgagac gtcgcacggg aactttgatc tggagttcag gccgaacgat cttcgttctt
     1861 cagattactc cgcacaggag atcggcgctg acggtagcgt gcacaagctg cccaaagctc
     1921 cggtcactac tttcagggct tcgataaaga acaatccacg cgcgcaagcg agaatgtcgg
     1981 tcggcgcaga tggtctcgaa ggagccatca tcaccggaac cga
//
LOCUS       DASWTX010000637         1955 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_380104, whole genome shotgun sequence.
ACCESSION   DASWTX010000637 DASWTX010000000
VERSION     DASWTX010000637.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1955
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_380104"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..815)
                     /gene="amrB"
                     /locus_tag="VGD38_09755"
     CDS             complement(<1..815)
                     /gene="amrB"
                     /locus_tag="VGD38_09755"
                     /inference="COORDINATES: protein motif:HMM:NF014899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AmmeMemoRadiSam system protein B"
                     /protein_id="HEY0728342.1"
                     /translation="MTNERSCLVFSGIAPHPPIMVPEVGRESIAAVRHSIDAMAELTD
                     RLIASGAETVILISPHAPLEIDSFVAYEGPEVYGDFAKFHAPETGVSVPLDRELLAAI
                     TNLAAGEKFRVSTLPETDLDHGTAVPLYFLLRNGWQGKVVALGYSFLSNEDHIRFGRC
                     IKKAVDELGRPVGFIASGDLSHRLTPHAPAGFNPNAHVFDEKVIAALQANDPQGIVEI
                     DFNLRKLAGECGFRSMLVAIGASTGLPLSWEVMNYEAPFGVGYLVAQLINQPA"
     gene            889..>1955
                     /locus_tag="VGD38_09760"
     CDS             889..>1955
                     /locus_tag="VGD38_09760"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR02032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY0728343.1"
                     /translation="MNEYDLLIVGAGPAGSFAAELLASRGAKVALFDGRPPTEPKACG
                     GGVTAKALKAWPKLLNAVGRTINELDLYSPSGKRLHLQLEEPFAVYSRVVFDGYLRER
                     ARDAGAHVFAEKISARKIVKTENGWRVSGDSDEWCGKVLAGADGANSGIAKTLVGPLS
                     PSDMEVAFGYRAPLPANGPAPTVVAFLPRWVGYAWAFPRPDHISFGIATTQDAFEHQP
                     LDDLLWRFMIGYYQQREDANVNFWKTHTNSTATDAIRDDLRSTAERYAARIPGLSPTT
                     WDNRTVCGTNWALLGDAAGFADPVTGEGIYYALRSAELFAEAYLRGDVQNYETSWRKD
                     FGAELRRAAQLRRRFYGNFLGA"
BASE COUNT          404 a          586 c          580 g          385 t
ORIGIN      
        1 tccgcaggct gattgatcaa ctgcgccacg agataaccaa cgccgaacgg cgcctcgtaa
       61 ttcatcacct cccacgacaa cggcaaaccc gtgctcgcac cgatcgccac gagcatcgat
      121 ctaaacccgc actcaccggc aagcttccgc agattgaagt ctatttcaac aatcccctgc
      181 gggtcgttcg cctgcagcgc cgcaatcacc ttctcatcaa acacgtgcgc attcggattg
      241 aatcctgccg gcgcgtgcgg cgtgagccgg tgactcaagt cgccactcgc gatgaaaccg
      301 accggccggc caagttcgtc gacggccttc ttgatgcaac ggccgaaacg tatgtgatct
      361 tcgttggaaa ggaagctata accgagtgct accacttttc cctgccagcc gtttcgcagc
      421 aggaaataca gcggcacggc ggtgccatga tcgagatctg tttcgggcaa agtggagacg
      481 cgaaacttct cgccggccgc gagattcgtg atggctgcga gtagctcacg atcgagcgga
      541 accgacacgc ccgtctcagg cgcgtgaaat ttggcgaagt cgccgtaaac ttccgggcct
      601 tcgtaagcga caaatgagtc gatctcgagc ggcgcatgtg gcgagatcag aatgacggtc
      661 tcggcgccgc tggcgattag ccgatccgtc agctccgcca ttgcgtcaat tgaatggcgc
      721 acggcagcta tcgactcgcg tccgacctcg ggcaccatga tcggcggatg cggggcaatg
      781 ccggagaaga ctaggcaact gcgctcatta gtcattctgt gcgctttcgc gatttgagag
      841 ggacggctgt tattctacgc tccgagcgcg agggtcacaa ttgaggcgat gaacgagtac
      901 gatctgctta ttgtcggcgc cggaccggcc ggctcctttg cggctgaatt acttgcgagc
      961 cgcggcgcga aggtcgcgct gtttgacggc cgtccgccca cggaaccgaa ggcctgcggc
     1021 ggtggcgtca cggcgaaggc attgaaagcc tggcccaagt tgctgaacgc cgtgggccgc
     1081 acgatcaacg agctcgatct ctattctcct tccggcaaaa gactccattt gcaactggaa
     1141 gaaccgttcg cggtttattc acgcgtcgtc ttcgacggct atttacgcga acgggcgcgt
     1201 gacgccggcg cacacgtatt cgcagaaaag atctcggcga gaaagatcgt gaagactgag
     1261 aacggctggc gcgtgtcggg cgattcagac gaatggtgcg gcaaggtgct cgcgggcgca
     1321 gacggcgcga acagcggcat cgccaaaacg ctcgttggtc cactctcgcc gtcagacatg
     1381 gaagtcgcat ttggttatcg cgcgccattg cccgcgaatg gaccagcgcc gacagtcgtg
     1441 gcgttcctgc cgcgttgggt cggatacgcg tgggcgtttc cgcgtcccga tcacatctct
     1501 ttcggcatcg cgacaacgca ggatgctttc gaacatcagc cgctagacga tctgctgtgg
     1561 cgcttcatga tcggctacta ccagcaacgc gaagacgcca acgtcaactt ctggaagact
     1621 catacaaatt caactgcgac cgatgccatt cgcgatgatc tgcgttcgac tgccgaacgt
     1681 tacgccgcgc gcattcccgg tctatcgccg acgacgtggg acaacagaac cgtctgcggc
     1741 acgaactggg cgttgctcgg tgacgctgcg ggtttcgcgg atccggtgac gggcgaagga
     1801 atctattacg cgttacgttc ggcggaatta tttgccgagg cttacctccg tggagatgtg
     1861 cagaattacg aaacaagttg gcgcaaagac ttcggcgccg aattgcgtcg cgccgcacag
     1921 ctgcgccggc gcttctacgg aaacttcctc ggcgc
//
LOCUS       DASWTX010000638         3401 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_314392, whole genome shotgun sequence.
ACCESSION   DASWTX010000638 DASWTX010000000
VERSION     DASWTX010000638.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3401
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314392"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..377)
                     /locus_tag="VGD38_09765"
     CDS             complement(<1..377)
                     /locus_tag="VGD38_09765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728344.1"
                     /translation="MCFVLSGATGLIYEILWARMLGLVFGATTLAVSTVLAAFMGGLA
                     LGSALAGRLAPRIRKPVSAYGWMEIAIAVYALLVPFLFNAVDDLYAQIWQRLQPGFFT
                     FTLLRFALSCLLLLVPTTLMGATL"
     gene            complement(416..1744)
                     /locus_tag="VGD38_09770"
     CDS             complement(416..1744)
                     /locus_tag="VGD38_09770"
                     /inference="COORDINATES: protein motif:HMM:NF013998.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HEY0728345.1"
                     /translation="MTPQRSSFTRVILGTLLVLAGIAAAIITVLARRSDNVALAGIAA
                     IVSLVIALLLTIFIVPPLARSARVEVANLDFPFEPTSGGGVFLVIIIVVGFAAWNTGN
                     NLLFLVFSLLCSTLFVGWVAARTSLRDLTVSARFPDHIFAAEPAPVIVTVRNTKRLLP
                     SFSIFVEARGPSSEPPERPNARRRYVKRLLAYFSYVPHHASAEQRVEQLFPKRGHVLI
                     DGFELSTRFPFGFFRRRRRLRARDVDIIVYPKPEVISDKLHLLPMYAGRIPSLRRGAG
                     HDLFSMRDYQAQDDLRHIDWKATARSRRLTVREFTSEDERRITIVLDTRLRGEPNEEL
                     RQRFEKGVVQTASLLKHFIEERAEVRLVLGDEVGPFGSGTEQLYRCLRRLALVTPVEG
                     GQPESFEVDTTMKTSVTRAAVEHDYAILLTAAAPGTIPASIWRTSHVIYL"
     gene            complement(1741..2724)
                     /locus_tag="VGD38_09775"
     CDS             complement(1741..2724)
                     /locus_tag="VGD38_09775"
                     /inference="COORDINATES: protein motif:HMM:NF040105.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEY0728346.1"
                     /translation="MRNLETIKGGQITSAIAIDQIERLQGAVETVIKGKPEAIRLAIV
                     TLIAGGHLLVEDVPGVGKTTLAHALARALDCTFQRIQFTSDLLPSDVIGLSVYNQHSG
                     VFEWKPGPVFANVVLADEINRTTPKTQSALLEAMAERHVTVEGATHNLPAPFIVLATQ
                     NPIEHHGTYPLPESQLDRFMLRLRIGYPAPADEQMILRDREYADPLEHLKPVMSAHAV
                     VELQRAVTTVSVDDALVQYLMRIVAATRESEMLDLGVSPRGTLSLFRAAQALALSEDR
                     TYCIPDDIKRLVVPVFAHRIVVSSRFSSSLRRSEEAEAVLNEILKTVSVPL"
     gene            2915..>3401
                     /locus_tag="VGD38_09780"
     CDS             2915..>3401
                     /locus_tag="VGD38_09780"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEY0728347.1"
                     /translation="MEPLKQNQNTRRDKNQRGFSLIELMIVIAIIGILIGVGIAGYRA
                     AIRAANEAAAVKTLRSIAEQQMLYFNAHQRSAFGTFEEMRKENLLDSRFDGTTPVVDG
                     YVYTMKIIPKSTSSQPGYTINADPQVATGTGATGRNHYYVESDSNTIHVNAEQPASAT
                     DP"
BASE COUNT          784 a         1054 c          972 g          591 t
ORIGIN      
        1 agcgtcgcgc ccatcaacgt cgtcggcacg agcaacagca aacacgacaa cgcaaaccgc
       61 aacagagtga acgtgaagaa ccccggttgc agccgctgcc agatctgcgc gtaaagatcg
      121 tcaaccgcat tgaagagaaa cggcaccagc aacgcataaa ccgcgatcgc gatctccatc
      181 cagccgtacg cgctcaccgg tttcctgatg cgtggcgcga gccggcccgc gagtgcgctg
      241 cccagcgcga gaccacccat gaacgccgcg agcaccgtgc tcaccgcgag cgtcgtcgca
      301 ccaaacacaa gcccgagcat gcgcgcccag agtatttcgt agatcaggcc ggtcgcgccc
      361 gataagacga agcacacgcc aattagaaag ttgtttgaac ggggattgaa aagattcaca
      421 aatagataac gtgactcgtg cgccagatac tcgcaggtat cgttcccggc gccgccgcgg
      481 tcaaaaggat cgcatagtca tgctcgaccg cagcacgtgt cacgctcgtt ttcatcgttg
      541 tgtcgacctc aaaactttcc ggctgtccgc cttcaaccgg cgtcaccagc gccagccgcc
      601 gcaaacagcg atagagctgc tcggttcccg aaccaaacgg tccgacttca tcacccaaca
      661 ccaacctgac ctcggcgcgc tcttcgatga agtgtttcag taacgacgcc gtctgcacga
      721 cgcctttttc aaaccgttgc cgcaactctt cgttcggctc gccgcgcaga cgcgtatcaa
      781 gcacgatcgt gatccggcgc tcgtcttcag aagtgaactc acgcaccgtc agccgccgcg
      841 atctcgccgt cgccttccaa tcgatatgcc gcagatcgtc ttgagcctgg tagtcgcgca
      901 tcgagaacag atcgtgtccc gcgccacgcc gcaacgacgg tatgcgcccg gcatacatcg
      961 gcagcaggtg cagcttgtcg ctgatcactt ccggcttcgg atagacgatg atgtctacgt
     1021 cgcgcgcgcg cagtctacgg cggcggcgaa agaacccgaa cggaaaacgc gtcgagagct
     1081 caaagccgtc gatcagcacg tgaccgcgct tcggaaacaa ctgttcgacg cgttgctcag
     1141 ccgaagcgtg atgcggcacg taactgaagt aagccagcaa ccgtttcacg taacggcgtc
     1201 gcgcgttcgg ccgttccggt ggctcactgc tcggaccacg cgcttcaaca aagatcgaaa
     1261 acgacggcaa caatcgtttc gtgttgcgca ccgtgacgat caccggcgcg ggctcggccg
     1321 cgaagatgtg atccggaaag cgcgccgaca ccgtcaggtc gcgcaacgaa gtacgcgccg
     1381 caacccaacc gacgaacaac gtcgaacaca acagcgagaa cacgagaaac agcagattgt
     1441 ttccggtgtt ccaggccgcg aaaccgacga cgatgatgat tacgagaaaa acgccgccgc
     1501 cactcgtcgg ctcgaaagga aaatccagat tcgccacttc aacacgcgcc gaacgcgcga
     1561 gcggcggaac gatgaagatc gtcaacagca acgcgatcac gagggagacg atcgccgcta
     1621 ttcccgcgag cgcaacgtta tccgaacggc gtgccaacac agtgatgatc gccgctgcga
     1681 ttccggcaag gaccagcaga gtgcccagga ttacgcgtgt gaacgaggag cgttgcggag
     1741 tcacagagga acactgacgg tcttcaaaat ctcattcagc accgcttcgg cttcttcact
     1801 gcgccgcaac gacgacgaga agcgcgagct gaccacgatg cgatgagcga agacgggcac
     1861 gaccaaacgt ttgatgtcat cggggatgca gtaagtgcga tcttcgctga gtgcgagggc
     1921 ttgcgcggcg cgaaacagag acagcgtgcc gcgcggactg acgccgagat cgagcatttc
     1981 ggattcgcgc gtcgcggcga cgatgcgcat taaatactga acgagtgcat cgtcaacgga
     2041 gacagtcgtc accgcgcgct gcaattcgac aacggcgtgc gcgctcatca cgggcttgag
     2101 atgttcgagc ggatcggcat actcgcgatc gcgcaggatc atctgttcgt ccgcgggcgc
     2161 cggataaccg atgcgcaggc gcagcatgaa gcgatcgagt tgcgattcag gcaacggata
     2221 agtgccgtga tgttcgatcg ggttctgcgt cgcgagcacg atgaagggcg ccggcaggtt
     2281 atgcgtcgcg ccttcgaccg tgacgtggcg ttcggccatc gcttcgagca atgcggactg
     2341 tgttttcggc gtggtgcggt tgatctcgtc ggccaacaca acgttggcaa agaccgggcc
     2401 gggtttccac tcgaaaacgc cgctgtgctg gttgtaaacc gagagtccga tcacgtcgga
     2461 cggcaataga tccgacgtga actgaatacg ttgaaaggtg caatcgagtg ctcgcgcgag
     2521 ggcgtgggcc agcgtggttt tgccgacgcc cggaacgtcc tcgaccaaca ggtgcccgcc
     2581 ggcgatcagc gtcacaatcg cgagccgaat cgcttctggc ttgcccttga tgaccgtttc
     2641 gacagccccc tggagccgtt cgatctggtc gattgcgatg gcgctggtta tctgcccgcc
     2701 cttgatggtc tcgaggtttc gcatgaattg acttgcattc tacatgctaa gagcacccgt
     2761 cgcacggaaa agttcgccgc tgaaatcctc gttccgagcg caatgtgacc tgcgcggggt
     2821 taatgtagta gactacggcg cgagagttgg gcgaatgaga cagaaagcgg aacttagaac
     2881 tcaccgcctc gtgtaattcg cccgaggagg cattatggaa cccctaaagc agaaccagaa
     2941 caccagacgc gacaagaacc agcgcggctt ctcgctcatc gagttgatga tcgtgatcgc
     3001 gattatcggc atcctgatcg gtgtcggtat cgccggctat cgcgcggcca tccgcgcggc
     3061 caacgaagcc gccgctgtca agacactgcg ctcgatcgcc gaacaacaga tgctttactt
     3121 caacgcacac cagcgcagcg cgtttggcac cttcgaagag atgcgcaagg aaaatcttct
     3181 cgacagccgt ttcgatggca ccactccagt cgtcgacggc tacgtctaca cgatgaagat
     3241 cattcccaaa tccacttcgt cgcaacccgg ctataccatc aacgccgacc cgcaggtcgc
     3301 aaccggcacc ggggccacgg gccgaaacca ctattacgtt gaatccgaca gcaacacgat
     3361 ccacgtaaac gccgagcagc cggcaagcgc gaccgatcct c
//
LOCUS       DASWTX010000639         1823 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_137443, whole genome shotgun sequence.
ACCESSION   DASWTX010000639 DASWTX010000000
VERSION     DASWTX010000639.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1823
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137443"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(159..1184)
                     /locus_tag="VGD38_09785"
     CDS             complement(159..1184)
                     /locus_tag="VGD38_09785"
                     /inference="COORDINATES: protein motif:HMM:NF013257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HEY0728348.1"
                     /translation="MPFDPRNILVIDFGQLGDVVLSLPALRAIRERFPHARITIAVGK
                     PAGEIVKLSGFADNVLEVDRVALRDGVKLVSIGRIFKFVGEVRKAKYDFVIDLHSLSE
                     TNLLGFLSGAPRRLYARRPGRSIDYLANFQPRPPRESRHAHAVDRYLDVIKPLGIENP
                     PRSPVLKTAPAADQAVESILKKEKANSGTLLVGLFPGAGNESRRWPLEHFADVADHLI
                     RNEGVRVIVFAGPEERPLIPQMRTMFPAQTIFLDKLTIPQLLSAQARLTLFVSNDTGP
                     AHTAAAVGTPVVVIMDRPTPNNFVPVGEQHRLIGAEKITQVSVQQVYQAAREVLAANR
                     TDKLRSL"
     gene            complement(1191..>1823)
                     /locus_tag="VGD38_09790"
     CDS             complement(1191..>1823)
                     /locus_tag="VGD38_09790"
                     /inference="COORDINATES: protein motif:HMM:NF013811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEY0728349.1"
                     /translation="IAFPPRHHRNVLAEVWGRLCVRNYRLAETEKYAHVTYFFNGGVE
                     KEFNCEQRLLVPSPKIATYDLQPEMSAFKVTDKFLRGVDEGDTDVFVVNFANPDMVGH
                     TGKLDKTIEACQYVDTCLGWITKRIRQARGTTIITADHGNAEQMIDLLTGSPHTAHTT
                     NPVPLHLIDEDLIGLKLREGGALEDVAPTMLALLGLDKPVEMTGRDLRET"
BASE COUNT          356 a          524 c          573 g          370 t
ORIGIN      
        1 aacttaatcg aatcgacatt ctaagcattg ttttctccct aattcgctga ggcaggctaa
       61 atttgaagag attactcgtg aggcagacgg ttaactccca tttccgcccg cggccctatc
      121 gagcccaagc catactaacg aagttaaact atgtttgtct atagggatct tagtttgtca
      181 gtgcggttgg cggcgaggac ctcgcgggcg gcctggtaga cctgctggac ggaaacctgt
      241 gtgatctttt cggcgccgat cagccggtgc tgctccccga cgggcacgaa gttgttcggc
      301 gtcggcctgt ccatgatgac gacgacgggc gttccgaccg ccgcggccgt gtgggccggg
      361 cctgtatcgt tggaaacaaa gagggttagg cgcgcctggg cggagagaag ctgagggatg
      421 gttaacttgt cgagaaagat ggtttgcgcc ggaaacatcg tccgcatctg cgggatgagc
      481 gggcgctctt ccggtccggc aaagacgatc acccggacgc cttcgttgcg gatgaggtga
      541 tccgccacgt cggcaaagtg ttccaggggc cagcggcgcg actcgtttcc ggcgcccgga
      601 aacaggccga ccaggagcgt gcccgagttg gccttctcct ttttcaggat cgactcgacg
      661 gcttggtccg cggccggcgc ggtcttgaga acaggcgacc gcggcgggtt ctcgatgccg
      721 aggggcttga ttacgtcgag atagcgatcg acggcgtgag cgtgcctgga ttcgcgcggt
      781 ggccggggtt ggaaattcgc caggtagtcg atggaacggc cgggccggcg cgcatacagc
      841 cgccgtggcg caccggacaa aaaacccagc aggttcgttt cagacaaact gtggaggtcg
      901 atgacgaagt cgtacttcgc tttacgaacc tccccaacga acttaaaaat ccgcccgatt
      961 gaaaccagct tgacgccgtc gcgcaacgcg acccgatcca cttccagaac gttgtcggca
     1021 aagccggaca gtttgacgat ctcgcccgcg ggtttaccga ccgcgatcgt gatccgcgcg
     1081 tgcgggaaac gttcgcggat ggcccgcaac gcgggcaaac tcaaaacgac atcgccaagc
     1141 tgaccaaagt cgatgacgag tatgttgcgc ggatcgaacg gcacgtacga ctaagtctcc
     1201 cgcaagtctc gtccggtcat ctcaaccggc ttgtccaggc ccagcaacgc gagcatcgtg
     1261 ggtgcgacgt cctcgagcgc gccgccttcg cgcaacttca ggccgatcag atcctcgtcg
     1321 atcagatgta acggcaccgg gttggtcgtg tgcgccgtgt gcgggcttcc ggtgaggagg
     1381 tcgatcatct gttcggcgtt gccgtgatcg gcggtgatga tcgtcgtgcc gcgtgcctgg
     1441 cggatgcgct tcgtgatcca gccgagacac gtgtcgacgt actggcacgc ctcgatcgtc
     1501 ttatcgagtt tgcctgtgtg accgaccatg tcggggttcg cgaagttgac gacgaaaaca
     1561 tccgtatcgc cttcatcgac gccgcgcagg aacttgtctg tgaccttgaa cgcggacatc
     1621 tcgggttgca gatcgtaagt ggcgatcttc ggcgagggga ccagcaaccg ctgctcgcag
     1681 ttgaactcct tctcgacgcc gccgttgaag aaataagtta cgtgcgcgta cttctcagtc
     1741 tcggcgagac gatagttgcg cacgcacaat ctgccccaaa cttccgcgag cacgttgcga
     1801 tgatgacgtg gcggaaacgc gat
//
LOCUS       DASWTX010000640         3174 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_359137, whole genome shotgun sequence.
ACCESSION   DASWTX010000640 DASWTX010000000
VERSION     DASWTX010000640.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3174)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3174)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3174
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_359137"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            162..860
                     /locus_tag="VGD38_09795"
     CDS             162..860
                     /locus_tag="VGD38_09795"
                     /inference="COORDINATES: protein motif:HMM:NF014090.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT1/CCC1 transporter family protein"
                     /protein_id="HEY0728350.1"
                     /translation="MPQTPHIERHFTSSEVVRDIVIGMADGLTVPFALAAGLTGAIAS
                     TGIIVTAGLAEIAAGSIAMGLGGYMAAKSDAEHYAKEREREKREVAEIPHEEMREVAE
                     VFQAYGLNEEETWPIVQALKRQPRNWVDFMMRFELGLEKPDPKRALTSALTIAGAYVA
                     GGLIPLSPYIFDNNASEALLLSVVMTLVALLVFGYVKGKFTGTRPLRSALQTAFIGSV
                     AAGAAFGIARLIGG"
     gene            complement(868..2841)
                     /locus_tag="VGD38_09800"
     CDS             complement(868..2841)
                     /locus_tag="VGD38_09800"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3857 domain-containing protein"
                     /protein_id="HEY0728351.1"
                     /translation="MKSLLITVLGLLLLAVPAQASVAGDEAPVWVQQAAALKVPAYEK
                     DVPAVVLVNERIVTIDSDGRITETLNYAVRVLQREGREYADGHVVYNPDSGKVKDLRA
                     WLIRPGAESKRYGKDETVDLAGALNDVYNEYRIRTISATNEADVGAVFAYTYTREERS
                     VFSQDDWSFQYELPVITSRYTLALPSGWRAEAVTFNHPKIEPRVNGSSYTWELSNLAA
                     VPQEPMSPRITNLVPRLAVSYYPPATGQQVSIKTFANWSDVAAWMAELEDPQVQIDDA
                     LSRKAYELTALAKTEYDKIRAIATYVQNIQYISIQTGLGRGGGYRPHSSTEVFAKSYG
                     DCKDKANLMRAMLKVVGIDAIPVSIYSGDPNYVQPGWPSPQQFNHCIIAVRVSDATQA
                     STIIEHPKLGRLLIFDPTDSETPIGDLPYHMQGSLALIDSKIATDLVKMPVTPPEMNQ
                     LERVATLQLQADGGIAGMIQENAKGQTAAEFRSQFRQMSKPDYHGMVERWLTAGATSA
                     RANKIEPSDNASDGKFTLNVEFSAKAYGQLMQDRLLVFKPAVVSRRESLALTAAQRKH
                     PVVLRANAYSETVKVQLPAGFAVDEVPDPVKLETMFGTYMTSYEVVNGELVFKRQLSQ
                     KATTIPAAQYDVVRKFYESIRAAENAPVVLARK"
     gene            complement(2869..>3174)
                     /locus_tag="VGD38_09805"
     CDS             complement(2869..>3174)
                     /locus_tag="VGD38_09805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728352.1"
                     /translation="IYFPFPWSEDDHVQIELPPGYALDNADAPAPFGSGKISEYKPAL
                     SITSDGKMLVYKRTFFFGGNNSVLFPVEAYPAMRGYFDQLHKQDNHNIALKQAAASN"
BASE COUNT          615 a          953 c          914 g          692 t
ORIGIN      
        1 tatcggttcg agcctcgcgc ttgtcgctgt gtcggcgctt ggcgtggtgg tgggcagcgt
       61 catcggacag tacgtgccgc tcgagtgggt gaagcgcggc gcagcggtgg cgtttatagc
      121 gatcggcatt ctcatgctcg ccggaaagtt ctaacacctg catgccgcag actccccaca
      181 tcgaacgtca cttcacttcg agtgaagtcg tgcgtgacat cgtgatcggc atggctgatg
      241 gtctaaccgt gccgttcgca ctcgccgccg gactcaccgg cgcgatcgcg tcaaccggaa
      301 tcatcgtcac cgcgggactc gcggagatcg ccgccggatc gatcgcgatg ggactcggcg
      361 gttacatggc cgccaagagc gacgccgaac actacgccaa agaacgtgaa cgtgagaaac
      421 gcgaagtcgc ggagatcccg cacgaggaga tgcgtgaagt cgcggaggtg tttcaggctt
      481 acggattgaa tgaagaagag acgtggccca tcgtgcaggc gctcaaacgc cagccgcgca
      541 actgggtcga cttcatgatg cgtttcgagc tgggcctcga aaaacccgac cccaaacgcg
      601 cgctaacaag cgcgttgacg attgcgggcg cctacgttgc gggtggcctg attccgctct
      661 cgccttacat cttcgacaac aacgcctcgg aagcgttgct gctctcagtc gtgatgacgc
      721 tcgtcgcgct gctggtcttc ggttatgtaa aaggaaaatt taccggaaca cgcccgcttc
      781 gcagcgcgct gcaaacagcc ttcatcggca gcgtcgcggc cggcgctgcc ttcggaatcg
      841 cgcgtctgat tggcggttga ataggtccta ttttcgcgct aaaacaaccg gcgcgttctc
      901 ggcggcgcgg atgctctcgt aaaacttccg caccacatcg tattgcgccg ccggaatcgt
      961 cgtcgccttc tgcgacaact ggcgcttgaa cacgagctcg ccgttcacca cttcatagct
     1021 cgtcatgtaa gtaccaaaca tcgtttcgag cttcaccgga tcaggcactt catcaaccgc
     1081 gaaacccgcc ggcagttgaa ctttcaccgt ttccgaatac gcattcgcgc gcaacacgac
     1141 cggatgtttc cgttgcgccg ccgtcaacgc caaactctcg cgccgcgaca caaccgcggg
     1201 cttgaaaacc agcagccggt cctgcatcaa ctggccatac gccttcgcgc tgaactcgac
     1261 gttcaacgtg aacttgccgt cgctggcgtt gtcgctcggt tcgatcttgt tcgctcgcgc
     1321 tgacgtcgcg cccgccgtca accagcgttc gaccatgccg tggtaatcgg gcttcgacat
     1381 ctggcgaaac tgcgaacgaa actccgctgc cgtttgaccc ttcgcgtttt cctgaatcat
     1441 gccggcaatc ccgccgtccg cttgcagttg caacgtcgcg actcgttcga gctggttcat
     1501 ctcaggcggc gtcaccggca tcttcacgag gtccgtcgcg atcttcgaat cgatcagcgc
     1561 aagactgccc tgcatgtggt aaggcaggtc gccgatcggc gtttcactgt cggtcggatc
     1621 gaagatcagc aagcgtccta gtttcgggtg ctcgatgatt gtgctcgcct gtgttgcgtc
     1681 gctgactctc accgcgatga tgcaatgatt gaactgctgc ggcgaaggcc aaccgggctg
     1741 cacgtagttt ggatcgcccg agtaaatgct gacgggaatc gcgtcgatgc cgacaacttt
     1801 gagcatcgcg cgcatcaggt tcgctttgtc cttgcagtcg ccgtacgact tcgcaaaaac
     1861 ctcggtcgaa gaatgcggac gataaccacc gccgcggccg agaccggttt gaatcgagat
     1921 gtattgaatg ttctgaacgt aggtggcaat cgcgcgaatc ttgtcgtatt cggtcttcgc
     1981 gagcgccgtc agttcgtaag cctttcgcga gagcgcatcg tcgatctgga cctgcggatc
     2041 ttcgagctcg gccatccacg cagccacatc agaccagttt gcaaacgtct tgatgctcac
     2101 ctgctgtccg gttgcgggcg ggtaataact caccgctagc cgcggcacga gattggtaat
     2161 tcgcgggctc atcggctctt gtggaaccgc tgccagattg gagagttccc acgtgtagct
     2221 cgagccgttc acgcgcggtt cgattttcgg atgattgaac gtcacggctt cggcgcgcca
     2281 accagacggc agtgcaagcg tgtagcgcga agtgatcacc ggcagttcgt actgaaagga
     2341 ccaatcgtcc tggctgaaca ccgatcgctc ttcacgcgtg tacgtgtaag caaacacggc
     2401 cccgacgtcc gcttcgttcg tcgcggagat cgttctgatc cggtattcgt tgtagacgtc
     2461 gttgagagct ccggcaagat cgactgtttc gtctttgccg taacgcttcg actcggcgcc
     2521 cggacgaatg agccacgcgc gcaagtcctt caccttgccg ctgtcggggt tgtaaacgac
     2581 gtggccgtcg gcatactcgc gcccttcacg ctgcaacacg cgaacggcat agttaagcgt
     2641 ctcggtgata cgaccgtcag aatcgatcgt cacgatacgc tcattcacca ggaccactgc
     2701 ggggacgtcc ttttcatacg ccggcacttt cagcgccgcc gcttgctgca cccaaaccgg
     2761 agcttcgtcg cctgctaccg atgcttgcgc cggcacggca agaagcaaaa gaccgagaac
     2821 cgttatcagt aatgacttca tatcgttcct catcggggtt gtctgtggtt agttggacgc
     2881 cgccgcttgc ttcaatgcga tgttgtggtt gtcctgtttg tgcagttgat cgaagtagcc
     2941 cctcatcgcg ggatacgcct caaccggaaa cagcactgag ttgttgccgc caaagaaaaa
     3001 ggtgcgtttg taaacgagca tcttgccgtc ggaagtgatg gacaacgccg gtttgtattc
     3061 cgagatcttg ccgctgccaa atggcgccgg cgcgtctgcg ttgtcgagtg cgtagccggg
     3121 cggtagctcg atctgcacgt gatcgtcttc cgaccaaggg aacgggaaat agat
//
LOCUS       DASWTX010000641         4343 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_161074, whole genome shotgun sequence.
ACCESSION   DASWTX010000641 DASWTX010000000
VERSION     DASWTX010000641.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4343
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161074"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..344
                     /locus_tag="VGD38_09810"
     CDS             <1..344
                     /locus_tag="VGD38_09810"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0728353.1"
                     /translation="RALQAGARGYLLKNMPPSELLDVIRQVHAGKKRIPPAIASQLAE
                     HMSDETLTDREVEVLRAVAGGNKNRDIANKLFISEETVKVHIKHIMEKLGAADRTQAV
                     TIGVRRGIIQL"
     gene            571..888
                     /locus_tag="VGD38_09815"
     CDS             571..888
                     /locus_tag="VGD38_09815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728354.1"
                     /translation="MVAHTAAYISTTKVSALGWIIVSLSLAGAACLLVGFMTPVIAIA
                     VTAGTVALALSGLHQSPLEIVVLTIAVALLGPGAFSLDARMFGRREILLPNTQRIRRN
                     PNA"
     gene            complement(967..1647)
                     /locus_tag="VGD38_09820"
     CDS             complement(967..1647)
                     /locus_tag="VGD38_09820"
                     /inference="COORDINATES: protein motif:HMM:NF033947.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cistern family PEP-CTERM protein"
                     /protein_id="HEY0728355.1"
                     /translation="MSRLRKLFFSLTAVGILAVVSATAHADTITVVGVDSGSFSTATV
                     VCEFNAQTNTFTFTITNTSHITQPGSTSTITGIGFDLPPIGNASGSGLNGFTGMQAPS
                     MSSSFTFSDGDVGNVPHGFNSAVLDFAFLTGPSGNFAGGSVNDGLAPGESASFIVSGS
                     AFAGMTEDQICNAIFVRFQNVPTAGGSGGSDVGVSTEVPEPSTMLLLGTALVGLGGVV
                     RRRRSKRQ"
     gene            complement(1878..3041)
                     /locus_tag="VGD38_09825"
     CDS             complement(1878..3041)
                     /locus_tag="VGD38_09825"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEY0728356.1"
                     /translation="MSAVKKTDYLPEAATLDLWRVAENGDVNELASVLPRVRDINAQN
                     EHGVTALMRAAQYGHLKMVRALLDHGADANLKRNDKFTALALAAFFGHTEIVRVLMEH
                     GADLQASTRHDTSPHMWATARTFNEVVDQLKKPASVPKPAPVARPAPVTKPAPIAKPA
                     EPKAQEQVVAPPIQIDRPPTAAKPAVVRTLSDPPEIWDLVHEVPRGFNPRSAFLTRLT
                     SLKGGWVFRTAAAVVLIGAGVAGVMLLRGVQARNDGPLVAPAKQQPLATMSVPSTTTT
                     SANISQPATVEPSASAATSLAPIESSSSTTDAPIVNRKPGARWSRGGSRAERDLTRQV
                     AASETVEPLATPVAQANTERRSDAQPKTSAPLSPQLIAPAKSATPKGKVIQWP"
     gene            complement(3045..>4343)
                     /locus_tag="VGD38_09830"
     CDS             complement(3045..>4343)
                     /locus_tag="VGD38_09830"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728357.1"
                     /translation="SLCVSPITAQTRLHKDFATSKDSYSESKRLYNEGVKYALAGLFA
                     QAAQIFQQAVKLDPQFADAHFALGHAYYDMGRWQNAIDSFKRAVELNPDDVEAQGRLE
                     QAREMLARDTGKKDKAAPTKTAAAPKSEPLRQPVAEKISLNAKPATPPVKTTESSKSE
                     VKESSKVEASESSAKENTTSKANAAATELALTRLYRVGPGDVLDIRINDSQAPQSTLF
                     TITPGGLLEHPLLAEPLHVGGLSVEEISSNIQGDLKRRALMETPKVSVAVRDYASHTI
                     LVSGLVKDSGTKILRREAIPLYVVVADAQPLPEAARVTVVRSEANEAYDIDLAQPAEM
                     NLLVRPGDVITLHANATQFLYIGGEVKSPGEKTYRRGLTLTQALIAAGGVTNKAKEAR
                     LGRDDGRGFLTVTRVKLKDIESGKIPDPQVRPGDRIMIVN"
BASE COUNT          860 a         1275 c         1229 g          979 t
ORIGIN      
        1 atcgcgcatt gcaggcgggc gcgcgcggtt atctgctcaa gaacatgccg ccgtcggagt
       61 tgctcgacgt gatccgccag gtccatgcgg ggaagaagcg cattcccccg gcgatcgctt
      121 cgcagctcgc cgaacacatg agcgacgaga cgctgacaga ccgtgaagtt gaagttttgc
      181 gtgcggtagc gggcgggaat aaaaaccggg atatcgcgaa taagctgttc atctcggaag
      241 agacggtcaa ggtccacatc aaacacatca tggaaaaact gggcgccgcg gatcgcaccc
      301 aggccgtcac gatcggcgtc cgccgcggca ttattcagct ctaatcccac caacgcagtt
      361 ggtggatact tcatacgccg cctataacac gaaagaggta tctaaagtta cctttatctc
      421 ttgattcatg ctccatcccg catccgtaaa cttacggatg tgcctatctc acattgaagg
      481 agcgttgttc tgcaaaagct gttttctgcc tttcccagta gctggcccgg cgttggtctc
      541 ctcctcctgc gcgggtttgt tagcgtcacg atggttgcgc acactgcggc gtacatctcg
      601 acgactaagg taagcgcgtt gggttggatt atcgtgagtt tgagcctcgc cggtgcggcg
      661 tgtttgctgg tcgggtttat gacgcccgtg atcgcaatcg ccgtcaccgc cggcacggtg
      721 gctctcgctt tgtccggtct tcatcaatcg ccgctggaaa tcgtcgtctt gactatcgca
      781 gtagcgctgc ttggaccagg cgccttttct ctcgacgcgc gcatgttcgg acggcgcgaa
      841 attcttctgc caaacacaca gcgcattcga cgcaacccta acgcataaca aaaagacgtc
      901 acaggcgggc aattacctgt gacgtctttt gtactcaaaa gcgggtgtcg gtcttgtttg
      961 cggcccttac tgtcgtttcg agcgccgccg tcttacgacg ccgcctaagc cgacgagcgc
     1021 agtgccgagc agcaacatcg tcgacggctc gggtacctct gttgagacac cgacgtcgct
     1081 gccaccgcta ccaccggctg tgggcacgtt ttggaaccgg acaaagatcg cgttgcagat
     1141 ttggtcttcg gtcatacctg cgaaggctga acctgacacg atgaacgagg cgctttcacc
     1201 cggcgccaat ccgtcgttta cggagccgcc cgcgaagtta cccgacgggc cggttaagaa
     1261 ggcaaagtcg agcacagcgg aattgaatcc gtgcggcacg tttccgacgt ctccatccga
     1321 aaatgtaaac gacgagctca tgctcggagc ctgcataccg gtgaatccgt tcaaacccga
     1381 gccactggca ttgccgattg gtggcaagtc aaagccaatg cccgtgatcg tcgacgtcga
     1441 acctggctgc gtgatatgcg acgtattggt tatcgtaaag gtgaatgtat tggtttgggc
     1501 gttaaactcg cacaccaccg ttgcagttga aaagcttccg ctgtcaaccc caaccaccgt
     1561 gattgtgtcg gcatgcgcgg tggcggaaac aacggccaag attcccaccg cggtcaatga
     1621 aaagaacaac tttcgcaatc gggacatttc tcctccttgt actcgtaact ccccatgaaa
     1681 aagcggactc agccaatgca atgactaccc gcgatacaac ctgttattca ggcatgcgtt
     1741 ttttgcaaac gtctttaggg gtagctgaga ataaaacttc acgggcttgc gatcaacact
     1801 gcgctcgtta tgtcacacaa tctccacagt cgtagcaccg aaaacgaata aagcgagacg
     1861 cgcgctgaac tcgatcgtta cggccattga atgaccttgc ccttcggcgt cgcgcttttc
     1921 gcgggcgcga tgagctgcgg gctcaagggt gcacttgtct ttggttgagc gtcggagcgt
     1981 cgctcggtgt tggcttgtgc aacgggcgtt gcaagaggtt caactgtttc gcttgccgcg
     2041 acttgccgag tcagatcgcg ctcagcgcga gaaccgccac gcgaccaacg tgcaccgggc
     2101 tttcgattca cgattggcgc gtcagtcgtg gatgatgaac tctcgattgg cgcgagagac
     2161 gtcgctgctg aagcgctcgg ttcgacagtc gccggttgag agatgtttgc ggaagtagtc
     2221 gtcgtgctcg gtacgctcat cgtcgctaaa ggctgctgtt tcgcgggcgc gactaaaggc
     2281 ccgtcattcc gcgcctgcac gccgcgcaga agcatcacgc cggctacgcc cgcgccgatc
     2341 aaaacgacgg ctgcggcagt gcgaaacacc catccacctt tgagcgatgt caatcgtgtc
     2401 agaaacgcgg atcgcgggtt aaaacctctc ggtacttcgt gtacgagatc ccaaatttcg
     2461 ggcgggtcac ttaacgtcct gacaaccgcg ggcttcgccg cagtgggcgg ccgatcgatc
     2521 tgtatgggcg gcgcgacgac ttgctcctgc gctttcggtt ccgcgggctt tgcaataggc
     2581 gcgggtttcg tcaccggcgc cggtcttgcg acaggcgccg gtttcggtac agacgcgggt
     2641 tttttaagtt gatcgacgac ctcattgaac gttcgcgccg tcgcccacat gtgcggcgac
     2701 gtatcgtgac gcgtcgacgc ctgcaaatcc gctccgtgtt ccatcagcac gcggacaatc
     2761 tctgtgtgac caaagaaagc cgccagcgcg agcgccgtaa acttgtcgtt gcgcttgagg
     2821 ttcgcatccg cgccgtgatc gagcagcgcg cgcaccatct tcaagtggcc gtactgcgct
     2881 gcgcgcatta acgcggtcac gccgtgttcg ttctgcgcat tgatgtcgcg cacacgcggc
     2941 aacaccgacg cgagctcgtt aacgtcgccg ttctccgcga cgcgccacaa atcgagcgtc
     3001 gcggcttccg gcaagtaatc ggttttctta actgctgaca tttcttaatt gacgatcatg
     3061 atccggtcac ccggacgaac ctgcgggtcg ggaatcttcc cagattcaat gtctttcaac
     3121 ttaacgcgag tgacggtcag gaaaccgcgg ccgtcatcgc gcccgagccg ggcttccttg
     3181 gctttattcg tcacgccgcc cgcggcaatc agcgcttgcg tgagcgtgag cccgcgccga
     3241 tatgtctttt ctccgggaga cttaacctcg ccgccgatgt agagaaactg cgtcgcgttt
     3301 gcgtgcaacg tgatcacgtc gcccggacga accagcaggt tcatctccgc cggctgtgcg
     3361 agatcgatgt cgtaagcttc attcgcttca ctgcgaacca cagtcactcg cgcagcttcc
     3421 ggcagcggct gtgcgtcggc gaccacgacg taaagcggaa tcgcctcgcg ccgcaggatc
     3481 tttgttcccg agtctttcac gagaccgctg acgagaatcg tgtgactcgc ataatcgcgc
     3541 acagccaccg acactttcgg cgtctccatc aaggcgcgtc tcttgagatc accctgaatg
     3601 ttcgaactta tttcttcaac gctcaaaccg ccgacgtgca aaggctcggc gagtaacgga
     3661 tgctccaaca atccgccggg cgtgatggta aacaacgtgg actgcggcgc ttgcgagtcg
     3721 tttatgcgga tgtccaggac atcgcccgga ccaacacgat aaagcctggt gagagcgagt
     3781 tcggtagcgg cggcgtttgc tttggaggtt gtgttctctt tagccgaact ctcgcttgcc
     3841 tcgaccttgg aactttcttt tacttcgctt ttggaacttt cggtcgtctt gaccggcggt
     3901 gttgcgggtt tcgcgtttag cgagatcttc tcggcaacgg gttggcgcaa cggttctgac
     3961 ttcggcgccg cggcagtttt tgtgggcgcg gctttgtcct tcttgcctgt atcgcgggcc
     4021 aacatctcgc gcgcctgttc caaacggccc tgggcttcaa cgtcgtctgg attcagctca
     4081 accgctcgct tgaaactgtc gatcgcattc tgccaccggc ccatgtcgta ataggcgtga
     4141 ccgagcgcga agtgagcgtc agcaaactgc ggatcgagtt tcaccgcttg ttgaaaaatc
     4201 tgcgcggctt gcgcaaacag accggccagc gcgtacttga cgccttcgtt gtacaggcgt
     4261 tttgactctg aatacgaatc tttcgaagta gcgaagtcct tgtgaagcct ggtctgggcc
     4321 gtaatcggac tcacacaaag aga
//
LOCUS       DASWTX010000642         1845 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_380162, whole genome shotgun sequence.
ACCESSION   DASWTX010000642 DASWTX010000000
VERSION     DASWTX010000642.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1845)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1845)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1845
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_380162"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..552)
                     /locus_tag="VGD38_09835"
     CDS             complement(<1..552)
                     /locus_tag="VGD38_09835"
                     /inference="COORDINATES: protein motif:HMM:NF013673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase modulator"
                     /protein_id="HEY0728358.1"
                     /translation="MTSRRDFLRTAGVAAGALSLAKLPDWFSGVVAAEEAAANGVDKN
                     ALADIALSTARKLGVSYADIRINRYRNEQISTREQQVQNVSRSQNFGFGVRVLYRGTW
                     GFASSRSVTPEDVRRITQQAVEIARANSVYQRQRVALVPIEKVVTSWKSSFEKDPFEV
                     SIDDKIQFLLSLNSSATKTEGVGF"
     gene            complement(887..>1845)
                     /locus_tag="VGD38_09840"
     CDS             complement(887..>1845)
                     /locus_tag="VGD38_09840"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728359.1"
                     /translation="HYVEVVKAANADYRQGGNGSIKALSLFDREHDNVNAGFEWSVAR
                     SNSSKEAASICSDYARYASQILQLRKPPKTRIRWYSQALDAARYVEDVEAELVHLIGL
                     GGAYRKLGERETALDIYMNAREIAAKSSFPQLKAEILSSLGLEYRDRGEIHKARECFD
                     EQLTISRELGNSRGVSLALVNLGNASLALGRVDEAIKRYEEAIDISRKIADLQAEGLA
                     LGNLGRAYIQIKDSDRALEFCRQHLEISRKLGDRLGEATALFNIALASQQKGAVDEAR
                     AEAGAALEIYEQLESANAERVRKWLAQLEPQLVTHDRGNETT"
BASE COUNT          391 a          547 c          472 g          435 t
ORIGIN      
        1 gaagcccacg ccttcggtct tcgttgccga cgagttgagc gacaacagga attggatctt
       61 gtcgtcgatc gagacctcga acggatcttt ctcgaacgag ctcttccatg acgtgacgac
      121 cttctcgatc ggaacgagcg cgacacgctg gcgctgataa accgaattgg cgcgggcgat
      181 ctcgaccgct tgctgcgtga tgcggcgcac gtcttcgggc gtgacactgc ggctcgacgc
      241 aaaaccccac gttcccctgt acagcacgcg cacgccgaag ccgaagttct gacttcgcga
      301 cacgttctgc acctgctgtt cgcgtgtgga gatttgctcg ttgcgatagc gattgatgcg
      361 gatatctgcg tagctcacac caagcttgcg cgcggtgctc agagcaatat cagccagtgc
      421 attcttatcg acgccattcg cggccgcctc ctccgcagcc acgacgccac taaaccaatc
      481 cggcaacttc gccagcgaca gcgccccggc cgcaactccg gccgtcctca aaaaatcacg
      541 acgagaggtc atcttaagcc tcgtttggaa agggaattga aatgcgtgag agatttaaat
      601 gtgtgaggtg tgaaaagtca acgaacaacg ctgcgctgta acctcattta agaaggcgtt
      661 gctcgatctg gattacacgg atcggggttt ctaagcgcct gtgcctccgc cctggttgtc
      721 cggtggatca atagcgatgg tgctatccga acaatcagcc tctgcggtag tggtgccgcc
      781 cccaccctgt gcgtctggag ggtcaattgg ttctggtgtt tcgtcaatca tggttttcac
      841 gttctcaatc ggatgaaggt cattgaaagc tctgatctgc aataagtcaa gtcgtctcgt
      901 tcccacgatc gtgcgtaact agttgaggtt ccaattgtgc gagccatttt cgcacccgtt
      961 ccgcattagc tgattcaagt tgctcataaa tctcgagggc ggcgccggct tccgcacggg
     1021 cctcatcgac agcgcctttc tgttgcgacg ccagcgcgat attaaaaagg gccgtcgcct
     1081 cgccaagccg gtcgccaagc tttcgcgaaa tctcaaggtg ctgccggcaa aactccagcg
     1141 cacggtcaga atctttaatc tgtatgtacg cgcgcccgag gtttcccagt gccaatcctt
     1201 ccgcctgtag atcggctatc ttgcggctga tgtcgatcgc ttcttcgtaa cgtttgatcg
     1261 cctcgtcgac gcgaccgagc gcgaggcttg cgttaccaag gttcactaac gcgagactca
     1321 caccgcgcga attacccaac tcccgcgaaa tagtaagctg ctcgtcaaaa cattcccgag
     1381 ccttgtggat ttcgccgcgg tcacgatact ccagacccag actcgacaaa atctcagcct
     1441 ttagttgcgg gaaactggac ttcgcggcaa tctcacgtgc gttcatataa atgtcgagcg
     1501 ctgtttctct ctctcccagc ttgcgatacg cgccgccaag accaataaga tgaaccagtt
     1561 cggcctcgac gtcttccaca taccgtgccg cgtccaacgc ctgcgaatac catcggatac
     1621 gcgttttggg cggttttcgc aattgcagaa tctgcgatgc ataccttgcg taatcgctac
     1681 agatcgatgc ggcctctttg cttgagtttg aacgcgcgac gctccattca aatcctgcgt
     1741 tgacgttatc gtgttctcga tcaaacagtg aaagtgcctt gatcgaacca ttgccgccct
     1801 gacgataatc agcattggct gccttcacca cttccacgta atgag
//
LOCUS       DASWTX010000643         2674 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_359193, whole genome shotgun sequence.
ACCESSION   DASWTX010000643 DASWTX010000000
VERSION     DASWTX010000643.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2674
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_359193"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            141..845
                     /locus_tag="VGD38_09845"
     CDS             141..845
                     /locus_tag="VGD38_09845"
                     /inference="COORDINATES: protein motif:HMM:NF016269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-binding SYLF domain-containing protein"
                     /protein_id="HEY0728360.1"
                     /translation="MFTIRSLSALIIIGLLVISAAVTPAQKKDRTKDAARHAGNASET
                     FTEIMNVKDKAIPQELLDTAEAIAVFPGVIKAAFVIGGRGGQGVISRRVKGGWSAPAF
                     FNLGGGSFGPQIGAQKTDYILLIMNENGLNGLLKDKFELGGEAAIAAGPVGREAAAST
                     NPRLDAGILSYSRSKGAFIGAALKGAVISPDNDLNEAVYGKKADEVLKSPPLQIGQMP
                     PSVRIFPRTLVRYSIR"
     gene            1039..1671
                     /gene="lexA"
                     /locus_tag="VGD38_09850"
     CDS             1039..1671
                     /gene="lexA"
                     /locus_tag="VGD38_09850"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: protein motif:HMM:TIGR00498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HEY0728361.1"
                     /translation="MLPRTQRQKEILDYITRFLERHGYVPSYAQIARQFGVKSRATIA
                     KHIAALERRGLLVREHEDGSFALNVKVEDKSADSLCEVKLLGRIAAGAPLEAVSDDGD
                     ERIPVPRFLLGRVKPDRVYALKVKGDSMIDEHICDGDIALIENRTDARDGEIVVALLI
                     EENQATLKRLYRRGANIELQPANSQLQPLTLPASQVRVQGIFRGLLRPSV"
     gene            complement(1679..2542)
                     /locus_tag="VGD38_09855"
     CDS             complement(1679..2542)
                     /locus_tag="VGD38_09855"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEY0728362.1"
                     /translation="MQQGFDEQIVGPKQIAQYDEQGYLVLERFVDEADCDRLRARAEE
                     LVQEFDPAEVVSIFSTHEQNRTTDEYFLTSGDKIRFFFEENAFNPDGTLKYEKEKSIN
                     KIGHALHDLDPVFNRFSRTQKIKELAKAIGIDNPLLLQSMYIFKQPNIGGEVTCHQDS
                     TFLYTEPIDIAGLWFALEDATVDNGCLWALPGGHRHGLKSRWRRSQNCAMEFEVYDDE
                     PWPTDGLVPLEAPKGTLIVLNGLLPHLSYENRSARSRHAYTLHLISANAKYPADNWLQ
                     RSETMPPRGFE"
BASE COUNT          566 a          690 c          784 g          634 t
ORIGIN      
        1 agtggcgggc aatttacttg ccctcgcgat tgaagtcaag caaaaagtgc ggcgttatgc
       61 cgtcacgaga agttgagtct cgctttgtta aattagcttc agggattact atttcggtaa
      121 cacgatcgga gggggaaaca atgttcacga ttcgcagtct tagcgcacta atcattatcg
      181 gcttactagt tatttcagcc gcagtcacac ctgcgcagaa gaaagaccgt acgaaagacg
      241 ccgcgcgtca tgccggcaac gcgtcggaga cgttcactga aatcatgaac gtgaaagaca
      301 aagcgatacc gcaggagctg ctcgacaccg cggaagcgat cgccgttttt ccgggcgtga
      361 tcaaagcggc gtttgtgatt ggcggacgcg gcggacaggg cgtgattagc cgtcgcgtga
      421 agggaggttg gagcgcgcct gcgttcttca atctcggcgg cggcagcttc ggtccgcaga
      481 tcggcgcaca gaagactgac tacattctgc tgatcatgaa cgagaacggt ttgaacggtt
      541 tattaaagga caagtttgag cttggcggcg aagcggcgat cgctgctggt ccagtcggac
      601 gtgaagcagc ggcttcgacg aatccgcgac tcgatgcggg cattctttcc tactcgcgca
      661 gcaaaggcgc gttcatcggc gccgcgttga aaggcgcggt gatcagtcct gacaacgatc
      721 tgaacgaagc agtctacggc aagaaggctg atgaggtgct caagtcgccg ccgctgcaga
      781 tcggacagat gcctccttca gttcggatct ttccgcgcac gttggtgcgt tactcgatcc
      841 gttagcctgg ttttgaagtt caggctttag cttgtgtctt cagaacggca gcctgaaggc
      901 tgaactcaaa acaacaaacg ccttgacgcc gttgtgtgtg cgacctagaa tgcttcgtca
      961 cctccagcgg tcgactgagt tcttacctgc aagtggtcta actgtaactg ggcttaattc
     1021 agaactgctc aacgaagaat gctcccgcga acgcagcgcc aaaaagagat cctcgattac
     1081 atcacgcgtt tcctcgagcg ccacggttat gttccgtcgt acgcgcagat cgcgcgacag
     1141 tttggcgtga agtcgcgggc gacgatcgcg aagcacattg ccgcgctcga gcgtcgtggt
     1201 ctattggtcc gtgagcatga agatggatcg tttgcgctga atgtcaaagt tgaagacaag
     1261 agcgctgatt cgctttgtga agtgaagctg cttgggagaa tcgccgcagg tgcgccgctc
     1321 gaagccgtct ccgacgatgg tgatgagcgg attccagtgc cgcgttttct gctcgggcgt
     1381 gtgaagccgg atcgagttta tgcgttgaag gtcaaaggcg attcgatgat cgacgagcac
     1441 atctgcgacg gcgacatcgc gttgattgag aatcgtaccg acgcgcgcga cggcgagatc
     1501 gtcgtggcct tattaataga agagaaccag gcaacgttga agcgcctgta tcgccgcggt
     1561 gcgaacatcg agttgcagcc ggcgaattcc caactccaac ctcttactct ccccgccagt
     1621 caggtccgcg tgcagggcat tttccgcggg ctgttgcggc ctagcgttta atttccggtt
     1681 attcgaaacc tctgggtggc atcgtctcgg atcgctgtaa ccagttgtcg gctgggtact
     1741 tggcgttcgc ggagatcagg tgaagcgtgt aggcgtgcct cgatcgcgcg gatctgtttt
     1801 cgtaactaag gtggggcagc aggccgttta ggacgatgag tgttcccttt ggtgcttcga
     1861 gtgggacgag tccgtccgtg ggccacggct cgtcgtcgta gacttcaaac tccatcgcgc
     1921 agttttgcga acgtcgccag cgtgatttca aaccgtgtct atgtcctccc ggcaacgccc
     1981 aaagacagcc gttatcgacg gtcgcatctt cgagcgcgaa ccacagaccg gcgatgtcga
     2041 tcggctcggt gtagagaaac gtgctgtcct gatgacacgt gacttcgccg ccgatgtttg
     2101 gttgtttgaa gatgtacatc gactgaagca ggaggggatt gtcgatgccg atcgctttcg
     2161 ctaactcttt gatcttttga gtccgtgaga agcggttgaa aaccggatcg agatcgtgaa
     2221 gcgcgtgacc gatcttgttg atcgactttt ctttttcgta tttgagtgtg ccgtcggggt
     2281 tgaaggcatt ctcttcgaag aagaaacgga tcttgtcgcc ggaggttaga aaatattcgt
     2341 ctgtggtgcg gttctgttcg tgagtggaaa agatggagac cacttcggcg ggatcgaact
     2401 cctggaccaa ctcttcagct cgcgctcgca gccgatcgca atcagcttcg tcaacaaacc
     2461 gctccagaac gagatagcct tgctcgtcgt actgtgcgat ctgctttggt ccgactattt
     2521 gttcgtcaaa tccctgctgc acgcttgcgt taacctgtaa gacaaatctc tgaaactgac
     2581 gcccttcgtt tcaccttcgg gaacatactc aaaatctgcc ggcgcggtga agtctgacgg
     2641 atcgttgaac tcttcccact gcttcaccgc gccg
//
LOCUS       DASWTX010000644         5395 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_314480, whole genome shotgun sequence.
ACCESSION   DASWTX010000644 DASWTX010000000
VERSION     DASWTX010000644.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5395
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314480"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..619)
                     /locus_tag="VGD38_09860"
     CDS             complement(<1..619)
                     /locus_tag="VGD38_09860"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HEY0728363.1"
                     /translation="MRHLSLLLVFIFVVPVMAQRAPVLPAGRVVDLTHPFDEASVYWP
                     TAEAFKLDTDFEGMTDKGYFYSAYRYSAAEHGGTHLDAPVHFAKGRHTVDAIPLDQLM
                     GNGILIDVTAQCAANPDYQVSTTDFRNWERRNGRIRPGTIVFLRTGFGKRYPDRKSYL
                     GTDERGAAAVAKLHFPGLDPAAARWLTQNRSIKAIGLDTASIDYGQ"
     gene            683..1699
                     /gene="gnd"
                     /locus_tag="VGD38_09865"
     CDS             683..1699
                     /gene="gnd"
                     /locus_tag="VGD38_09865"
                     /inference="COORDINATES: protein motif:HMM:TIGR00872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004616 - phosphogluconate dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating 6-phosphogluconate
                     dehydrogenase"
                     /protein_id="HEY0728364.1"
                     /translation="MQIGMIGLGRMGANMVRRLLRAEHECVVYDRNLETVRSLASEGA
                     VGAESLEDFVKKLQPQRAIWLMIPAALVDATLRDLVALVSAGDIIIDGGNSYYIDDIR
                     RAGELKDKGIHYVDVGTSGGVWGLERGYCQMIGGEKEVVNHLDPIFKALAPGGGTIAP
                     TPGRDAGSTTATEGYLHCGPAGAGHFVKMVHNGIEYGLMAAYAEGLNVLHHANEGNEE
                     RAADAETSPLRHPEHYRYDFNIAEITELWRRGSVIASWLLDLTAIAFAEHPQLEGYSG
                     RVSDSGEGRWTINAAVEEGVPVPVLSAALFQRFSSRGEAEFANKVLSAMRFQFGGHVE
                     RGAK"
     gene            1793..3355
                     /gene="zwf"
                     /locus_tag="VGD38_09870"
     CDS             1793..3355
                     /gene="zwf"
                     /locus_tag="VGD38_09870"
                     /inference="COORDINATES: protein motif:HMM:TIGR00871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEY0728365.1"
                     /translation="MSSILVEPSPVHMEAPHLPKAEPCVMVIFGATGDLTRRKLMPAL
                     WDLRGEGCLESVRILGVGRSPMSDDEFREFVRQAMAEHGNLTERDDEEWRKFTQRVYY
                     TIGELNDDNTYRNTARRLEELAADGASNNHLFYLATPPSLAADIIDGLGKAQLAKQDH
                     DHWSRIVIEKPFGSDLESARALNAKLAEVFAENQIYRIDHYLGKDTVQNILVFRFGNT
                     MFEPIWNRNYVDYVEITAAETGGVGSRAGYYEESGALRDMVANHLLQLLTLTAMEPPV
                     AFEADSVREEKVQVLRSIRRLKPDEVAERTVRARYSAGEIKDERVKGYREEEDVANNS
                     QTETYAAVEFRVSNWRWSGVPFYVRTGKRLARNLTEIAVHLKRTPQALFARAPEEELD
                     PTVIVLRIQPNEGITVAFGAKRPGFDMRATTVHMDFCYQRAFGVEPPAAYETLLLDVM
                     RGDATLFTRGDEVEAQWRLITPIEEVWANERVPEVTEYPAGTDGPAAADDLLARNGHR
                     WRRLSESTSGCD"
     gene            complement(3362..>5395)
                     /locus_tag="VGD38_09875"
     CDS             complement(3362..>5395)
                     /locus_tag="VGD38_09875"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY0728366.1"
                     /translation="GSILHCEWYNSALYNEAGKLVSVLSLVLDVTVATRIEEALRKSE
                     AQYRLLFESNPQPMWVYDLLTLRFLAVNDAAIRHYGYSRNEFLEMTIRDIRPPEDVQL
                     LADYLESGNPELDHAGEWRHRKKDGTVINVEITSSRLSFAGRAAEFVLVNDITERKKA
                     ETALRISEDRYRDLVDNSHELICTHDLEGRVLSCNPWAARVLGYPVEAIVGMQIRDNL
                     LPEYREEFDQYLQKVRNEGSARGVMKVRTATGETRLWEYYNTLRTEGVETPIVRGMAH
                     DATERREALQREKEARLEAEAANRVKDEFLSTLSHELRTPLTAIMGWSDLLLHDEVAP
                     RKRRQAIETIARNANSQCQLINDLLEVSRIITGKLRLEFAACELASVVQAAVDSIRPT
                     AEAKGVTLQVLLEQNTGPIFGDRERLQQIVWNLLSNAVKFNRHGGLVQVKLQRINSHV
                     EVVVTDNGVGINPDFLPYVFERFRQADGSTTRTYGGLGLGLAIVRHLVELHGGAAWVE
                     SAGANQGSTFTVRFPSMVASELHAEQMIEAQRESVVESRDRKRVLRGFRVLVVDDEFD
                     ARALVTTMLERSGAQVLAVSSTREALDSIEKWKPDVLIADIGMPIEDGYSLIRKVRAL
                     PSDRGGQTPALALTAYARTEDRIRALSEGYQMHLAKPVDRLELATIVGSLCRR"
BASE COUNT         1109 a         1585 c         1626 g         1075 t
ORIGIN      
        1 actgcccgta gtcgatgctt gccgtgtcga gaccgatcgc tttgatcgat cgattctgcg
       61 tcagccagcg cgccgctgcc ggatcgagtc ccggaaagtg taacttcgca accgccgccg
      121 cgccgcgttc gtccgttccc aaatacgact tccgatccgg ataacgtttg ccgaagcccg
      181 tgcgcagaaa cacgatcgtg cccggtctaa tcctgccgtt tcgccgttcc caattccgaa
      241 aatccgtggt gctgacctgg taatcaggat tcgccgcaca ctgtgcggtc acgtcgatca
      301 aaattccgtt acccatcagt tggtccaacg ggatcgcgtc gactgtatga cgacccttcg
      361 cgaagtgtac gggcgcgtcg agatgcgtgc cgccgtgttc cgctgccgag tatctgtatg
      421 ccgaataaaa atagcctttg tcagtcatgc cctcgaaatc ggtgtcgagt ttgaacgctt
      481 ccgcggtcgg ccagtacacg cttgcttcgt cgaagggatg tgtcaggtcg acgacgcggc
      541 cggccggcag cacgggcgct cgctgcgcca tgacaggaac gacaaaaata aatactaaaa
      601 gcagactaag gtgtctcatg tggagggctc cttgggcttt cggtagaatc ggcctaaaga
      661 ttaacgcgaa tcggagctgc gaatgcaaat tggaatgatc ggattgggcc gcatgggcgc
      721 gaacatggtg cgccgccttt tgcgcgctga acatgagtgt gttgtttacg accggaattt
      781 ggagacggtg cgaagtctcg cgtcggaagg cgctgtgggt gcggagtcgc ttgaagactt
      841 cgtgaagaag ttgcaaccgc agcgtgctat ctggctgatg attcccgccg cgcttgtcga
      901 tgcgaccttg cgtgatctcg ttgcgctggt gagtgcgggc gacatcatca tcgacggcgg
      961 caactcgtat tacatcgacg acatccggcg cgcgggtgaa ttgaaggaca agggtattca
     1021 ttacgtcgac gttggaacga gcggtggcgt gtggggactc gaacgcggtt attgccagat
     1081 gattggtggc gagaaggagg tcgtgaatca tctcgatccg atcttcaaag cactcgcgcc
     1141 gggcgggggt acgattgcgc cgacacccgg acgcgacgcc ggttcgacga ctgcgaccga
     1201 agggtatttg cattgtggtc cagcgggtgc gggtcacttc gtgaagatgg tccataacgg
     1261 gatcgagtac ggattgatgg ccgcgtacgc tgaaggactc aacgttctgc atcatgcgaa
     1321 tgagggtaac gaggagcggg ctgcggatgc ggagacgtcg ccgctgcgtc atcccgaaca
     1381 ctaccgttac gacttcaaca tcgccgagat caccgagcta tggcgccgcg gcagtgtgat
     1441 cgcgtcgtgg ttactcgacc tgaccgcgat cgctttcgcc gagcatccgc agctcgaggg
     1501 ttattcgggg cgtgtgtctg attcgggcga agggcgttgg accatcaacg cggcggttga
     1561 agaaggcgtg ccggtgccgg tgttgagtgc ggcgctgttt cagcgcttca gttcgcgcgg
     1621 cgaagcagag tttgcgaaca aggtactgtc ggcgatgcgg tttcagttcg gcggacacgt
     1681 cgagcgtgga gcgaagtaga agttagtttt gagttcaagc tttagcttgt ccgacgtggc
     1741 agcctaaagg ctgaactcaa aacgaggagc aagaaagtta caggagtagt tcatgtcatc
     1801 aatattggtg gaaccgagtc cggtgcatat ggaggcgccg cacctgccga aggcggagcc
     1861 gtgcgtgatg gtgatcttcg gcgcgacggg cgatcttacg cggcgcaagc tgatgcccgc
     1921 gttgtgggat ttgcgaggtg aaggctgtct cgagagcgtg cgaattctcg gcgttggccg
     1981 ctcgccgatg agcgacgacg agtttcgcga gtttgtgcgc caggcgatgg ccgagcacgg
     2041 caatctcacc gaacgcgacg acgaggaatg gcgcaagttt acgcaacgcg tctattacac
     2101 gatcggcgaa ctcaacgacg acaacacgta tcgcaacacc gccaggcggc tcgaagaatt
     2161 agccgccgac ggcgcgagca acaaccatct tttctatctc gcaacgccgc cgtcgctcgc
     2221 cgccgacatc atcgacggtc tcggtaaagc gcaactcgcg aaacaggacc acgaccactg
     2281 gagccgcatc gttatcgaaa aaccgttcgg cagcgatctc gaatcggcgc gcgcgctgaa
     2341 cgcgaagctc gccgaggtgt tcgccgaaaa ccagatctat cgcatcgatc attacctcgg
     2401 caaagacacc gttcagaaca tactcgtgtt tcgtttcggc aacacgatgt ttgagccgat
     2461 ctggaatcgc aactacgtcg actacgttga gatcacggcc gctgaaacgg gcggtgttgg
     2521 cagccgtgcg ggttattacg aagagtcggg cgcgttgcgc gacatggttg cgaaccactt
     2581 gttgcaactg ctcacgctga cggcgatgga gccgccggtc gcgtttgaag ccgattcggt
     2641 gcgcgaagag aaggtgcagg tgttgcgatc gattcggcgt ttgaagccgg atgaagtcgc
     2701 ggagcgcacg gtgcgcgcgc gatacagtgc gggcgagatc aaagacgaac gagtgaaggg
     2761 ttatcgcgaa gaagaagacg ttgcgaataa ctcgcagacg gagacttacg cggcggtcga
     2821 gtttcgcgtt tcgaactggc gctggtccgg cgtgccgttt tacgtgcgca cgggcaaacg
     2881 gctcgcacgc aacctgacgg agatcgctgt tcacttgaaa cgcacgccac aggcgctctt
     2941 cgcgcgcgcg ccggaagagg agctcgatcc gaccgtcatc gtgctgcgca ttcagccgaa
     3001 cgaaggcatc actgtcgcgt ttggcgcgaa acgcccgggg ttcgacatgc gcgccactac
     3061 cgttcacatg gacttctgtt atcaacgcgc tttcggtgtc gagccgccgg cggcgtacga
     3121 gacgctgttg ctggacgtga tgcgtggtga tgcaacgctg ttcacgcgcg gcgacgaagt
     3181 ggaagcgcag tggcgattga taaccccgat tgaagaagtg tgggccaacg agcgcgttcc
     3241 ggaagtgacc gaataccccg cgggcaccga cggccccgcc gccgcggatg atttgttggc
     3301 gcgcaacggc caccgctggc gccgcctctc cgagagcaca agcggctgcg attaaacgga
     3361 ttcaccggcg gcagaggctg ccgacgatgg tggcgagttc gaggcggtcg acgggtttgg
     3421 cgaggtgcat ctggtagcct tcggagaggg cgcggatgcg atcctcggtt cgggcgtagg
     3481 cggtgagagc cagggccggc gtttggccgc cacgatcgct cggcaaggcg cgcacctttc
     3541 tgatcaaact gtatccgtcc tcgatcggca ttccgatatc cgcgatcagc acgtcgggtt
     3601 tccatttctc tatcgaatct aaagcttcac gcgtcgaaga aaccgcgagc acctgcgcgc
     3661 ctgaacgttc gagcatcgtc gtcaccaacg cacgcgcgtc aaactcatca tcaaccacaa
     3721 gcacgcgaaa cccgcgcagc acgcgtttcc gatcgcgcga ctcaaccacc gactcacgct
     3781 gcgcctcaat catctgctcg gcatgcaact ccgacgcaac catcgacgga aagcgaaccg
     3841 taaacgtcga accctgattc gcaccggcgc tttcaaccca cgccgcgccg ccgtgcaact
     3901 ccacgaggtg acgtacgatc gccaacccga gcccgagccc gccgtaagtt ctcgtcgtcg
     3961 aaccatccgc ttggcgaaaa cgctcaaaca cgtacggcag aaaatccgga ttgatcccga
     4021 caccgttgtc agtcaccaca acctcaacgt gcgaattgat gcgttgcagt ttcacctgga
     4081 ccaacccgcc gtggcgattg aacttcaccg cgttcgacag gaggttccac acgatctgct
     4141 gcagccgctc gcgatctcca aaaatcggac cggtgttctg ttcgagcagc acttgcagcg
     4201 tgacgccctt cgcttcagcc gtcggccgaa tactatcaac cgccgcctgc acaacggacg
     4261 ccagttcaca agccgcaaac tccagccgca gcttcccggt aatgatgcgc gatacctcca
     4321 gcaggtcgtt gatgagctgg cactgcgagt tggcgttgcg cgcgatcgtc tcgatcgcct
     4381 gacgccgttt gcgcggcgcg acctcatcgt gcagcagcag atcggaccaa cccatgattg
     4441 ccgtcagcgg cgtacgcagt tcgtgcgaca acgtcgacag aaactcatcc ttgacgcggt
     4501 tcgccgcttc agcttcgagc cgcgcttcct tttcacgttg caacgcctcg cgccgctcag
     4561 tcgcgtcgtg ggccataccg cgcacgatcg gcgtctcaac accttcagtg cgcaacgtgt
     4621 tgtaatactc ccaaagccgc gtctcgcccg tcgcggtgcg cactttcatc acaccacgcg
     4681 ccgatccctc gttcctaact ttctgcagat actggtcaaa ctcttcgcga tactccggca
     4741 acaggttgtc gcgaatctgc atgccgacaa tcgcttcgac gggatagccg agcacgcgcg
     4801 ccgcccacgg attacacgaa agcacgcggc cttcgagatc gtgcgtgcag atcagttcgt
     4861 gactgttatc gacaagatcg cgataacggt cttcgctgat cctcagcgcc gtttctgctt
     4921 tcttgcgttc ggtgatgtcg ttgacgagga caaactcagc ggcccgtccg gcaaagctca
     4981 ggcggctgga tgtgatctcg acgttgataa ccgtgccgtc cttcttgcga tgacgccact
     5041 cgcccgcgtg atcgagctcg ggattgcccg actcgagata gtcagccagc aactgcacgt
     5101 cttcaggcgg gcgaatgtct ctgatcgtca tctcgagaaa ctcgtttcgc gagtaaccgt
     5161 agtgacgaat cgccgcgtcg ttcacggcca gaaaacgcag cgtcaacaga tcgtaaaccc
     5221 acatcggttg cgggtttgat tcgaagagca ggcgatactg cgcttctgac tttcgcagcg
     5281 cctcctcaat tcgcgtcgcc accgtaacgt caagcaccag cgacaacact gaaacgagct
     5341 tgcccgcttc gttgtagagc gcagagttgt accactcgca gtgaagtatc gaacc
//
LOCUS       DASWTX010000645         2288 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_293354, whole genome shotgun sequence.
ACCESSION   DASWTX010000645 DASWTX010000000
VERSION     DASWTX010000645.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2288)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2288)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2288
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293354"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1052)
                     /locus_tag="VGD38_09880"
     CDS             complement(<1..1052)
                     /locus_tag="VGD38_09880"
                     /inference="COORDINATES: protein motif:HMM:NF013506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S49 family peptidase"
                     /protein_id="HEY0728367.1"
                     /translation="MSGTRKTALIIVGILGALILVGILGIALIWIAVRKGEPTIRNNS
                     VLALRVSGTLPDYSPDDPFKQFFGGPDQSLTGLVMQFKKAKVDNRIKAIVLDIDMSGV
                     GWGKAEEIRDAITDFRSSGKPVYAFIEFGLNKEYYIATACDKIIVPPPGQLFINGLAA
                     DVMFFRGSLDKLGIYPDIFQIGKYKSAGDMFTQKQMTDAHREYINSMLDDLYGRYINT
                     IAQARKKSPDEVRTLIDNAPYSGPKAKEVGLIDDVVYHDELENQIKKQLGYKDTDTFT
                     PVRGVDYRDVSPESLGLHPGERIAVIYASGDIGSGSSQNSPSGDQSSGSATVSKALND
                     AAADKTIKAIVLRVDSP"
     gene            complement(1137..2249)
                     /gene="mnmA"
                     /locus_tag="VGD38_09885"
     CDS             complement(1137..2249)
                     /gene="mnmA"
                     /locus_tag="VGD38_09885"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEY0728368.1"
                     /translation="MKIAVAMSGGVDSSAAAAILKDQGHELVGFTMQLWDQRRGINVD
                     ENGDPLPSRCCSLDDVYDARRVAEELGFPFYVLNLERDFERDVVQPFVSSYLNGETPI
                     PCVACNSRLKFASLDRLAVSLGCEKVATGHYARVEFDRDSRRFRLLRGRNEQKDQSYF
                     LWELTQEQLSRALFPLGEMSKPEARDAARQHNLIGVAEKKESQEICFVPDGDYAGFID
                     RYLEAEDATDRLPGAGEIVDADGKVIGKHEGIHRYTVGQRRGIGIADQRPLYVISINA
                     DRNRVAVGPAEELLSNEFTAAGVNWISFETPSEPVRADVRVRYRHTAAPATITPLPEQ
                     RARIVFDEPQRAITPGQATVFYRGDEVVGGGWIVQR"
BASE COUNT          484 a          702 c          603 g          499 t
ORIGIN      
        1 ggactatcga cacgcaacac gatcgccttg atcgtcttgt cagccgccgc atcgttcaac
       61 gccttcgaca ccgtggccga tccactcgac tgatcacccg aaggactgtt ttgcgaactg
      121 cctgaaccga tatcgccact cgcgtaaatc acggcgatcc gttcgcccgg atgcagtccg
      181 agcgactccg gcgagacgtc gcgataatca acaccacgca ccggagtaaa cgtgtccgtg
      241 tctttgtagc caagctgttt cttgatctgg ttctcgagct catcgtgata aaccacgtca
      301 tcgatcagtc cgacttcctt cgccttgggc ccgctgtacg gcgcgttgtc gatcaacgtg
      361 cgcacctcgt cgggcgactt cttgcgcgcc tgcgcgatcg tgttgatgta gcggccgtaa
      421 agatcgtcga gcatcgagtt gatgtactcg cggtgcgcgt cggtcatctg cttctgcgtg
      481 aacatgtcgc ccgcgctctt gtattttccg atctgaaaga tgtcgggata gatgccgagc
      541 ttgtcgagtg agccgcggaa gaacatcacg tcagcggcga gtccgttgat aaacaactgt
      601 cccggcggcg gcacgatgat cttgtcgcac gcagtcgcga tgtaatactc cttgttcaaa
      661 ccaaactcga tgaaggcgta aaccggcttg cccgacgagc gaaagtcggt gatcgcgtcg
      721 cgaatctctt cggccttgcc ccagcccaca cccgacatgt cgatgtcgag cacgatcgcc
      781 ttgatgcgat tgtcgacttt ggctttcttg aactgcatga ccagcccggt aagcgactga
      841 tctggaccac caaagaattg tttgaagggg tcgtcaggac tgtaatccgg caacgttcca
      901 ctgacgcgca gcgcgagcac gctgttgttg cgaatggtcg gttcgccctt gcgcacggcg
      961 atccaaatca aggcaatacc caggatgccg actaaaatca gcgcgcccag tattccgacg
     1021 ataatcaaag ctgtcttacg tgttcctgac attgccatac gattcagtcc tttttagtga
     1081 tagtaagtag tgacgtgtgt gtacgctaac agcgcacaaa aggtttaggg caaaggtcaa
     1141 cgttggacga tccagccgcc cccgacgacc tcgtctccgc gatagaaaac cgtggcctgg
     1201 ccgggcgtga tggcgcgttg tggttcgtcg aaaacaatgc gggcgcgctg ctcgggtaga
     1261 ggagttatcg tcgccggggc ggcagtgtga cgataacgca cgcgaacgtc tgcacggacc
     1321 ggctctgacg gagtctcaaa actgatccag ttgacgccag ccgcggtaaa ttcattactc
     1381 aacaactctt cagcgggacc caccgcgacg cggttccgat ccgcgtttat cgaaatgacg
     1441 tagagaggtc gttgatccgc gatcccgatg cctcggcgtt gcccaaccgt gtaccggtga
     1501 ataccttcgt gctttccgat tacttttccg tcggcatcga caatctcacc ggccccgggc
     1561 aaacgatcgg tggcgtcctc cgcttcgaga tagcgatcga tgaagcctgc gtagtcgccg
     1621 tcaggcacga agcagatctc ctgcgattcc ttcttctccg caacgccgat caagttgtgc
     1681 tgccgcgccg cgtcgcgcgc ttccggcttc gacatctcac ccaacggaaa cagcgcgcgc
     1741 gacagttgct cctgcgtcag ttcccacaga aagtaagatt ggtctttttg ttcattccgg
     1801 ccgcgcaata accgaaacct gcggctatcc ctatcaaact cgacgcgcgc gtaatgtccg
     1861 gtcgcgactt tttcacaacc caaactcact gccagccgat ccagcgacgc gaacttcaaa
     1921 cggctattgc acgcgacgca cggaatcggc gtctcgccgt ttagataact cgacacaaac
     1981 ggctgcacca cgtcgcgctc gaagtcgcgt tcgagattca gcacgtaaaa cggaaaccca
     2041 agctcttccg ccacgcgccg cgcgtcgtaa acgtcgtcga gcgaacaaca acgcgacggc
     2101 aacggatcgc cgttctcgtc gacgttgatg ccgcgacgct gatcccaaag ctgcatcgta
     2161 aagccgacaa gctcgtgacc ctgatctttc agaattgccg cggctgccga tgaatccacg
     2221 ccgccactca ttgctactgc tatcttcata agtcccgtac tatctcttcc tttctgagta
     2281 acgctagc
//
LOCUS       DASWTX010000646         1729 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_359287, whole genome shotgun sequence.
ACCESSION   DASWTX010000646 DASWTX010000000
VERSION     DASWTX010000646.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1729
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_359287"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..225)
                     /locus_tag="VGD38_09890"
     CDS             complement(<1..225)
                     /locus_tag="VGD38_09890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY0728369.1"
                     /translation="MEIPRGRRRVIPLGPVCAFLLLACCPLAFALNPELDVSQYAHTS
                     WKSRDGFPKSEITSMAQTHDGYLWLGTEFGL"
     gene            427..>1729
                     /locus_tag="VGD38_09895"
     CDS             427..>1729
                     /locus_tag="VGD38_09895"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY0728370.1"
                     /translation="MGRAQSTNASLAGRITDPANALIVDAQVAAISTGTNIRYEDTTN
                     DSGEYHLANLPPASYRLEIQKPGFKTLIKPDVILHVQDALRIDLQMTLGDVSETVMVE
                     SGAPLVNTETATVSTVVNRTFVENIPLNGRSFQTLIQLAPGVVLTPSTFNDQGQFSVN
                     GQRADANYFMVDGVSANFGVTGFIAMMQSASGALPALSASGGTNSLVSVDAMQEFRIQ
                     TSSFAPEFGRTPGGQISIATRSGTNAFHGTLFEYFRNDVLDARDWFVNFNRLPKPAER
                     SNDFGGVLGGPIVKDKTFFFFSYEGQRLRQPSSLQTVVPDNQSRQQAPVSMRPFLNAY
                     PVANGPALAPGVAQFNASFSNPSSLDAYSIRLDHSFRPTLNLFGRYNYSPSHMDQRGP
                     LFSSGRVLSTTNSLSSTVHTGTIGLTQIISPEISNEVRANYS"
BASE COUNT          373 a          499 c          474 g          383 t
ORIGIN      
        1 caaaccgaac tccgtgccca gccagagata tccgtcgtga gtttgagcca tcgacgtgat
       61 ctcggatttg ggaaaaccgt cgcggctctt ccaggacgtg tgcgcatact ggctgacgtc
      121 cagctcggga tttaacgcaa acgcgagagg gcaacacgcc agcagcagga aggcgcatac
      181 ggggccaagc gggatgacac gtcgtcgtcc gcgagggatc tccatggtcc gcatatctta
      241 tcgcagtatc gcctcggcat tggaagcacg cacatcactc gatcgggtta tcggccctta
      301 acccctttgc ggcattgaca ccggcccaac gcgggcatta gtctcgcgca tccactttcg
      361 catgtgaggt ttgaacttgt gcgccgagtt gctgcattag tattcatcct cctcactact
      421 tttttattgg gccgggccca atcaacgaat gcctcgctgg cgggacgtat cacggacccg
      481 gcgaatgctc tgatcgtcga cgcccaagtg gcggcgatca gcaccggcac gaatattcgt
      541 tacgaagata cgacgaatga ttcgggcgaa tatcacctcg cgaatcttcc accggcatct
      601 tatcgcctcg aaatacaaaa acccggtttc aagacgctca tcaagcctga tgtgattctt
      661 cacgtgcagg acgcgctgcg tatcgatctg caaatgacac tcggcgatgt ttcggaaacc
      721 gtcatggtgg aaagcggtgc gccgctcgtg aataccgaaa cggccacggt tagcacggtc
      781 gtaaatcgta cctttgtcga gaacattcca ctcaacggcc gcagttttca gacgttgata
      841 caactggcgc ccggtgtcgt tctaactccg tcgacgttca acgatcaggg acagttcagt
      901 gtgaatggac aacgcgcgga cgcaaactat ttcatggtcg acggcgtcag cgcgaatttc
      961 ggcgtcaccg gattcatcgc catgatgcag agtgcttccg gcgcgctacc ggcgctcagt
     1021 gcttcgggcg gaacaaacag cctcgtgtcg gtagacgcca tgcaggagtt tcgtatccag
     1081 acgtcttcat ttgcgccgga gtttggacgc acgccgggcg ggcagatctc gattgcgacg
     1141 cgttccggaa cgaatgcttt tcacggcact ttgttcgagt attttcggaa tgacgtgctg
     1201 gatgcgcgag actggtttgt aaacttcaac cgtcttccga aaccggcgga gcggtcgaac
     1261 gactttggcg gtgtgctcgg tggtccaatc gttaaagaca agacgttctt tttcttttcg
     1321 tacgaaggac aacggctgcg ccagccgtcg agcctgcaaa cagtcgtgcc ggataaccag
     1381 tcgcggcagc aggctcctgt ctcgatgcgg ccgtttttga atgcttatcc ggtcgcgaat
     1441 gggccggcac tcgcgccggg cgtggcgcaa ttcaacgcga gtttctcaaa tccgtcctcg
     1501 cttgatgcgt acagcattcg gctcgaccat tccttccgcc caacgctgaa tttgtttggc
     1561 aggtataact actcgccgtc acacatggac cagcgcggac cgttgttctc atccggtcga
     1621 gtgctcagca cgacgaattc gttatcgtct acagtacaca cgggaacgat cggcctcaca
     1681 cagatcatca gccccgagat cagcaacgaa gtacgcgcaa actacagca
//
LOCUS       DASWTX010000647         2192 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_7454, whole genome shotgun sequence.
ACCESSION   DASWTX010000647 DASWTX010000000
VERSION     DASWTX010000647.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2192
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7454"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2151)
                     /locus_tag="VGD38_09900"
     CDS             complement(<1..2151)
                     /locus_tag="VGD38_09900"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEY0728371.1"
                     /translation="MWTVVAGGAAACLYAAYTLPRGIVDGYFLLLTLVTAVIGSRIAI
                     RIPQINLNITVDDTFVFIALLIYGGESAVLIGALTGVCSALRISRKARTVAFGGGAVA
                     CAVFITATVLTLTFGSPTALFSFGPSMAIIGLCLMGVVQYLAHTGMGAAASALKANES
                     LWYMWSRNFLWISISYFAGAAGAGFIVSSLGTARFWAFLVCIPIIIIVYFSYDRYMRE
                     VKASARHAEEAERARAEAEHERAEQAERHVQELNAYIAEQERISRVLEETKEHFRHAA
                     FHDSLTGLPNRAMFTELLKAEMDGSKRRKDHLFAVLFLDLDRFKNINDSLGHTHGDLL
                     LVAFAERLERALRPIDTLARFGGDEFAILLSGMHDATDAVRVAQRISEELSQPFVLDK
                     NSAFATASIGIALSSSGYDRPEDILRDADTAMYRAKENGKARYEVFDHAMHARAVSRL
                     QLESDLRQAVEQKEFCVYYQPIVSLETGRLAGLEALVRWNHPRRGLVSPADFIPVAEE
                     TGLIVPIGEWVLLEACKHIRECQTAFPSHRSLSLSVNLSARQVAQSDLLDRIKEALAI
                     SKLNPHCLKLEITESVVMENAEAAALMFKQLRSLGVQLSIDDFGTGYSSLSYLHRFPL
                     NYLKIDRSFVSRLTTDNDNAIVRTISTLARNLGMEVIAEGIETEEQYQQLRMLGCEYG
                     QGYLFSHPVNHDGVLHLLAQDAHRDENPALDLPST"
BASE COUNT          474 a          643 c          652 g          423 t
ORIGIN      
        1 ggttgagggg aggtcgaggg cggggttttc gtcgcggtgc gcgtcctggg cgaggaggtg
       61 caggacgcca tcgtggttga ccggatggga gaagaggtag ccctggccgt attcgcagcc
      121 cagcatccgc aactgttgat actgctcttc cgtctcgatg ccttcggcaa tgacttccat
      181 gccgaggttg cgggcgaggg tcgagatggt gcggacgatg gcgttgtcgt tgtccgtcgt
      241 cagacgcgac acgaatgagc gatcgatctt gaggtagttg agcgggaaac ggtgcaggta
      301 actgagcgac gaatagccgg tgccgaagtc gtcgatgctg agttgcacgc cgagcgagcg
      361 caattgtttg aacatcagcg cagccgcctc agcattttcc ataacgacgc tctccgtgat
      421 ctcgagtttc aaacagtgcg gattcaattt actgatcgcg agcgcttctt tgatccggtc
      481 gagcaggtca ctttgggcca cctggcgcgc ggaaagattc acgctcaggc tcaacgagcg
      541 atgactcgga aacgccgtct gacactcgcg aatgtgtttg cacgcttcca gcaacaccca
      601 ttcgccaatc ggaacgatca aaccagtctc ttccgcaacc ggaatgaaat cagccggcga
      661 cacgagcccg cgtcgcggat gattccagcg cacgagcgct tccaacccgg cgagacgtcc
      721 ggtttccagc gaaacgatcg gttggtagta aacgcagaat tccttctgct cgacggcctg
      781 tcgcagatcg ctctccaact gcaaacgcga aacagcgcgc gcgtgcatcg cgtgatcgaa
      841 aacttcgtaa cgcgccttac cgttctcctt cgcgcgatac atcgccgtgt ccgcgtcgcg
      901 caggatgtct tcgggccgat cgtaaccgct cgaactgagc gcgatgccga tgctcgcggt
      961 cgcgaaagcg gagttcttgt cgagcacgaa cggctggctg agctcttcag aaattctctg
     1021 cgccacacgc accgcatcag tcgcgtcgtg catgccactc aacaggatcg caaactcgtc
     1081 accgccaaaa cgcgcgagtg tatcaatcgg gcgaagtgcg cgttccaaac gttccgcgaa
     1141 cgcgacgagc aacaagtcgc cgtgcgtgtg ccccaaactg tcgttgatgt tcttgaaacg
     1201 atcgaggtcg agaaacaaca cggcgaacag gtgatccttg cggcgcttcg agccatccat
     1261 ctcggctttg agcagttcgg taaacatcgc gcggttcggc aaaccggtta gcgagtcatg
     1321 aaaagctgcg tgacggaagt gttccttcgt ctcttcgagc acgcggctga tgcgttcctg
     1381 ttcggcgatg taagcgttga gctcctgaac gtggcgctcg gcctgttcgg cgcgttcgtg
     1441 ctcggcttcg gcgcgcgcgc gttccgcttc ttcagcgtga cgcgcggaag ctttcacttc
     1501 gcgcatgtaa cggtcgtagc tgaagtagac gatgatgatg atcggaatac aaacgagaaa
     1561 cgcccaaaag cgcgccgtgc cgagactgct gacgatgaaa cccgcgccgg ccgcacctgc
     1621 gaagtaactg atcgagatcc acaggaagtt gcggctccac atgtaccaca gagattcatt
     1681 cgccttcaac gcgctggcag cggcgcccat gccggtgtgg gccaggtatt gcacgacgcc
     1741 catcaggcac aggccgatga tggccatcga tggaccaaac gaaaacagcg ccgtcggaga
     1801 tccaaacgtg agagtcaaaa ccgtcgccgt gataaacacc gcacacgcca ccgcgccgcc
     1861 gccaaacgcg accgtgcgcg ccttgcggct aatgcgcagc gcggaacaga caccggtcag
     1921 cgcgccaatc aacacggcgc tttcgccgcc gtaaatcagc aacgcgatga aaacgaacgt
     1981 atcgtcaacg gtgatgttga gattgatttg cgggatgcga atcgcgatgc gcgagccgat
     2041 aacggcggtg accagtgtca acagcagaaa atatccatcg actatgccgc gtgggagtgt
     2101 gtaggccgca tacagacagg ccgccgcgcc tcccgcgacg accgtccaca tgtaagttcc
     2161 gctgagattt tgtcgtaagg ttttcatccg ca
//
LOCUS       DASWTX010000648         3738 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_31902, whole genome shotgun sequence.
ACCESSION   DASWTX010000648 DASWTX010000000
VERSION     DASWTX010000648.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3738)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3738)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3738
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31902"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..956
                     /locus_tag="VGD38_09905"
     CDS             <1..956
                     /locus_tag="VGD38_09905"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0728372.1"
                     /translation="LHGKDVTDLPARERGVGVIFQNYALFPKMTVEKNIGYGLRIRKR
                     RRKEIRETVNELLALVQLEEHRKKYPSQLSGGQQQRVAIARTLAYKPEVLLFDEPFGA
                     LDTQTRSHLRREIRGLLKKVKVPSIFITHDQEEALELGDRVAVLNEGHIEQIGTPYEI
                     YNRPATEYVATFLGAANILEATVRQGVLEVGPAKITASLDPAKFRNGDCVKIVFRPED
                     VVLSHSDQRRPGLTTISNGLVEEVTFVGAYERIRLRLDLGGEECRRDESPYFLTTETP
                     ERQTTKAIIATRPKPEASASRLQAGDRVVVAITSFTVLEPQ"
     gene            953..1609
                     /locus_tag="VGD38_09910"
     CDS             953..1609
                     /locus_tag="VGD38_09910"
                     /inference="COORDINATES: protein motif:HMM:NF022142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2490 domain-containing protein"
                     /protein_id="HEY0728373.1"
                     /translation="MITKPAVSLLLVCLFAAAVLAQTDRTDNQFWTEVVLGVPVTKNF
                     DFNIVGGLRVGRDFSHPVDERVGAGFTFRYGDHLTVAPHYLHIGMQPFAGRRIWENRL
                     VLPVTLRFNIGDFRISDRNQFERRIRNSGLKANRYRNRFQVDHPVGDKDWQLSLYVAD
                     EVFYDWFVDRWVRNRFLVGGTKVFNKHFTQEFYYMRQNDGVSLPGDLNVIGTTLRFRL
                     "
     gene            complement(1578..2699)
                     /locus_tag="VGD38_09915"
     CDS             complement(1578..2699)
                     /locus_tag="VGD38_09915"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEY0728374.1"
                     /translation="MVTRNEKLSAFLTEHINSGEFPSAVYLIGEGDRVVFADALGHSV
                     VQPYRIANKLDTIYDLASLTKPLVTGMLCARRIELGELTLDSSVSHYLPEFERTDKQM
                     ITVRELLTHTSGLPAWRPLYILAEDERERAAGAIASLDLEYKPGTRVLYSDLGFIALG
                     ILLERLTRHQLSDLAQREIFAPLNLQQTFFNPEIALQTGIAACETGNVYEQNMCAESG
                     SGEYQNSRQRLIWGEVHDGNAYFLGGAAGHAGLFSTASDVFQLAQQFIAGFSHLLTAE
                     TCKLFRQNMSEGLEEARSLAWQLAATKDSTAGTDLPPDSFGHNGFTGTSVWIDAEHAR
                     VFILLTNRTHARELPFANINAVRREFHSIATAEIAASSQ"
     gene            complement(2711..3703)
                     /locus_tag="VGD38_09920"
     CDS             complement(2711..3703)
                     /locus_tag="VGD38_09920"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY0728375.1"
                     /translation="MSLRTAVIGVGSLGRQHARIHGALAGEGRSQFVAVCDLNEETAR
                     IVSEERTTEWTTDWRELIGRVDAVSLAVPTEAHCEIACGLLENGVHVLVEKPISRTLE
                     EADRMIRAAEKGNALLQVGHLERFNPAMVALRPHVKKPVYFEIHRVGQFTARSLDIDV
                     VLDLMIHDLDIVQWLVGEEVEVTSIHAVGIAILTNKVDAANARLEFSSGAVANITASR
                     VGTEKIRKMRFFQPHDYVAIDYTTKRASVSSLSPPSASGSWPGVHIKHLDVIDVEPLR
                     AEIVSFLDSAENGLPPAVSGSDGRNALSLALRTLERIREHAEHPGVSELSVNVG"
BASE COUNT          747 a         1043 c         1149 g          799 t
ORIGIN      
        1 tcctgcacgg caaggacgta accgatctgc ccgcacgcga gcgcggcgtc ggcgtcatct
       61 ttcagaacta cgcgctgttt ccgaagatga ccgtcgagaa aaacatcggt tacggtctgc
      121 gcattcgcaa gcggcggcgc aaagagattc gcgagacggt caacgaactg ctcgcactgg
      181 tccagctcga agaacatcgc aagaagtatc cgtcgcagct ttccggcggg cagcaacaac
      241 gcgtcgcgat cgcgcgaacg cttgcgtaca aaccggaagt gttgctgttt gacgagccgt
      301 ttggcgcgct cgacacgcaa acgcgttcgc atctgcggcg cgagattcgc gggttgttaa
      361 agaaggtcaa agtgccgtcg atcttcatca cgcacgatca ggaagaagcg ctcgagctcg
      421 gcgaccgcgt cgcggtgttg aatgaaggac acatcgaaca gatcgggacg ccgtatgaga
      481 tctacaaccg tccggcaacg gagtacgtcg cgacttttct cggcgcggca aatattcttg
      541 aggcaactgt cagacaaggt gttctcgaag tcggtcctgc taaaatcacc gcgtcactcg
      601 acccggcgaa gtttcgcaat ggcgattgtg tgaagatcgt tttccgtccg gaagacgtgg
      661 tgttgagcca tagcgatcaa cggcgtccgg ggctgacgac gatttcaaac ggactggttg
      721 aagaggtcac gtttgtcggc gcgtacgagc ggattcgttt gcgtttggac cttggcggtg
      781 aagagtgccg ccgtgatgaa agcccgtatt ttctgacgac ggaaacgcct gaacgacaga
      841 ccacgaaagc catcatcgcc acgcggccga agccggaggc gagtgcgagc aggttgcagg
      901 caggcgatcg cgtagtggta gcaattactt ccttcacagt gctggagcct cagtgatcac
      961 aaaacccgct gtttccttgt tacttgtgtg cctctttgcg gctgcggttt tggcccaaac
     1021 agatcgaacg gacaatcaat tctggaccga agttgtgtta ggcgtgcccg taaccaaaaa
     1081 cttcgacttc aacattgtcg gcgggcttcg cgtcggacgt gatttcagtc atccggtcga
     1141 cgaacgtgtc ggcgcgggct tcacgtttcg ttacggcgat cacctgacgg tagcgccgca
     1201 ttatctgcac atcggcatgc agccgtttgc gggccggcgt atctgggaga atcgtctcgt
     1261 gctgccggtg acgttgcgct tcaacatcgg cgactttcgt atcagcgatc gcaatcagtt
     1321 tgaacgccgg atacgaaact ccggcttgaa ggcgaaccgc taccgcaacc gtttccaggt
     1381 ggaccatccg gttggtgaca aggactggca gctatcgctg tatgtcgcgg acgaggtctt
     1441 ttacgactgg tttgtggatc gctgggtgcg caaccggttt ttggttggcg gcacgaaggt
     1501 cttcaacaag cacttcaccc aggagttcta ttacatgcga cagaacgacg gcgtcagtct
     1561 gccgggcgat ctgaacgtca ttgggacgac gctgcgattt cggctgtagc gatactgtga
     1621 aactcgcgtc gcaccgcgtt gatgtttgcg aaaggcagct cgcgcgcgtg tgtgcggttg
     1681 gtgagcagga tgaaaacgcg tgcgtgttcg gcgtcgatcc agacggaggt tccggtgaag
     1741 ccgttgtgtc cgaagctgtc gggcggcaga tcggtgcccg cggttgagtc tttcgtcgct
     1801 gcgagttgcc acgcgagcga acgcgcttct tccaaaccct cgctcatgtt ctggcgaaac
     1861 agtttgcacg tttcggctgt gagcagatgg ctgaagcctg cgatgaactg ttgggccaac
     1921 tgaaacacgt cgctcgcggt tgagaaaaga cctgcatgac cggcggcgcc gccgaggaag
     1981 tacgcgttgc cgtcgtgaac ctcgccccag atcaatcgtt ggcgtgaatt ttgatactcg
     2041 ccgctgccgc tttccgcaca catgttctgc tcgtagacgt ttccggtttc gcaggccgcg
     2101 atgccggttt gcagagcgat ttcgggattg aagaacgtct gttggagatt caacggcgcg
     2161 aagatctcgc gttgggccag atccgagagc tggtgacggg ttaggcgttc gagcaggatg
     2221 ccgagcgcga tgaaaccgag atcgctgtag agcacgcgtg tgccgggttt gtattcgaga
     2281 tcgagactgg cgatcgcgcc cgctgcgcgt tcgcgttcgt cttcggcgag gatgtaaagc
     2341 gggcgccacg ccggcaggcc ggatgtgtgc gtcaataact cgcgcaccgt gatcatctgt
     2401 ttgtccgtgc gttcgaattc cgggaggtag tgcgaaacgg agctgtcgag tgtcagttcg
     2461 ccgagctcga tgcgccgcgc gcagagcatg ccggtgacca gcggcttggt gagcgaggcg
     2521 agatcgtaaa tcgtgtcgag cttgttggcg atgcgataag gctggaccac cgaatggccc
     2581 aacgcgtccg cgaagacgac gcggtcgccc tcgccgatca gatagacggc ggagggaaac
     2641 tcgcctgagt tgatgtgttc ggtgaggaaa gccgaaagtt tttcattgcg cgtgaccatc
     2701 gaactaaaaa ctaaccaacg tttacgctga gctcactcac accggggtgc tcggcgtgtt
     2761 cgcgaattct ttccagggtg cgtagcgcca ggctgagggc gtttcggccg tcggaacctg
     2821 atacggccgg tggcagaccg ttctcggccg agtcgagaaa cgagacgatc tccgcgcgca
     2881 gcggctctac gtcgatcacg tccagatgtt tgatgtgtac gcccggccac gaaccgctcg
     2941 cgctcggcgg cgatagactg ctcaccgacg cacgcttggt cgtgtaatcg atcgcgacgt
     3001 aatcgtgcgg ctgaaagaaa cgcatcttgc gaatcttctc cgtcccgacg cgcgaagcgg
     3061 tgatattcgc aaccgcgccg gacgaaaact cgagccgcgc attcgccgca tcgaccttat
     3121 tcgtcagaat cgcgatcccc accgcgtgaa tgcttgtgac ttcaacctct tcgcccacga
     3181 gccactgcac gatgtccagg tcgtgaatca tcagatcgag cacgacgtcg atatcgagtg
     3241 agcgcgcggt gaactgcccg acacgatgta tctcgaagta aaccggcttc ttgacgtgcg
     3301 gccgcaacgc caccatcgcc ggattaaacc gttcgaggtg gcccacctga agcaacgcgt
     3361 tgcctttttc agccgcgcgg atcattcgat cggcttcttc gagcgtgcgt gagatcggtt
     3421 tctccaccag cacgtgaacg ccgttttcga gcaggccgca cgcgatttcg caatgtgctt
     3481 ccgtcggcac tgccagactc accgcgtcca cgcgtccgat cagttcgcgc cagtcagtgg
     3541 tccactccgt cgttctctct tcactaacga tgcgcgcggt ttcttcgttg agatcgcaga
     3601 cggcgacaaa ctgcgagcga ccttcgccgg cgagtgcgcc gtgaatgcgt gcgtgctggc
     3661 ggccaagact gccgacgccg atgactgctg tacgtaatga catggtttag gtaatttaac
     3721 cggattattc cgaatcgg
//
LOCUS       DASWTX010000649         1844 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_336869, whole genome shotgun sequence.
ACCESSION   DASWTX010000649 DASWTX010000000
VERSION     DASWTX010000649.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1844
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336869"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..426)
                     /locus_tag="VGD38_09925"
     CDS             complement(<1..426)
                     /locus_tag="VGD38_09925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728376.1"
                     /translation="MKLRLLYHGHCFDGVASAATFTRFYKERIHPEAEVNYTGLLHRP
                     GNLFDLTMFDSDENAIVDFKYAASDKLTWWFDHHESAFLTPEDEAHFRADKSGKKFLD
                     ATRKSCTEFIADVAHERFGFNPEPIQTLIHWAHIIDGALY"
     gene            complement(423..1055)
                     /locus_tag="VGD38_09930"
     CDS             complement(423..1055)
                     /locus_tag="VGD38_09930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY0728377.1"
                     /translation="MKKFVFVSILALAVSPLAARAQSHEYSPLVEKTVNYKNWSLPNL
                     KTGVDEDLRTLIAGKKLVMIVYFAPWCGNWRYEAPIAAKLYEKYKSQGFLVIGVSEYA
                     NMDETQTFFGEAGPPYPVVSESNSRDEKLKTPHYEYRQLTGDKRNWGSPWNIFLEPAK
                     LNAKGDVLTEKAWVVNGELIEDEVDKFIASKLAPASGTSAGVIEPCKNCQ"
     gene            complement(1074..>1844)
                     /locus_tag="VGD38_09935"
     CDS             complement(1074..>1844)
                     /locus_tag="VGD38_09935"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HEY0728378.1"
                     /translation="IIGLAATSGGWRNGLLLSAFYSAGLAVPFLLTGLGINKFLGFYK
                     NFRRHLHKVEVVSGVVLILIGGLVMSGKLAQLANSQLVALIPNLENLFKLRGPAAKPP
                     DPPPANASYEPLPDVEFRTLADEAYSLKSLQGQVVMLNFWATYCIPCREEIPALNELQ
                     QELKAQGLHIVGASLDDSIEGVNQSQQEVVKFDYQVLIGGSDAKVKFAQSVLPTTYLI
                     DRQGRIRQKIIGARDKAGWEAAVKPLLAEAPATASAAN"
BASE COUNT          392 a          509 c          506 g          437 t
ORIGIN      
        1 ataaagcgcg ccgtcgatga tgtgcgccca gtggatcagc gtttggattg gttccggatt
       61 gaacccgaaa cgctcgtgcg caacatccgc aataaattca gtacacgact tccgcgtggc
      121 gtccaaaaac ttcttgccgg atttgtcggc gcggaagtgc gcttcgtctt cgggcgtgag
      181 aaacgccgac tcgtgatgat cgaaccacca cgtcaacttg tcagatgccg cgtacttgaa
      241 atcgacgatc gcattctcgt cggaatcaaa catagtgagg tcaaacaggt tgccgggacg
      301 atgcagcaag cccgtgtagt tgacctcggc ttccggatga atacgttctt tgtagaagcg
      361 agtgaaagtg gccgccgaag cgacgccgtc gaagcagtgg ccgtggtaaa ggagacgaag
      421 tttcactgac agtttttaca gggctcgatt acgccggccg atgtgccgct tgctggtgcg
      481 agcttcgaag cgatgaactt gtccacctcg tcttcgatca gctcgccgtt tacgacccac
      541 gccttctcgg tcaacacgtc tcccttggca ttcagcttcg ccggttcgag aaagatgttc
      601 cagggcgagc cccagttacg tttgtcgcca gtgagttgcc ggtattcgta atgcggcgtt
      661 tttagttttt cgtcgcgcga gtttgattcg ctcacgacgg gatacggtgg accagcctca
      721 ccaaaaaacg tttgcgtttc gtccatgttc gcgtactcgc tcacgccgat caccagaaag
      781 ccctgactct tgtacttctc gtacaacttg gccgctatgg gcgcctcgta acgccagttc
      841 ccgcaccacg gcgcaaagta aacaatcatc acgagcttct tacctgcgat cagagtgcgc
      901 aaatcctcat ctacaccggt cttgagattt ggcagcgacc agtttttata gttcaccgtc
      961 ttctcgacca gcggcgaata ctcgtggctt tgcgcgcggg ccgcaagcgg tgagactgcg
     1021 agagcaagaa tggaaacgaa cacaaacttc ttcatggtgt tactccaact gctttagtta
     1081 gcggcgctgg cggttgcagg agcttccgcg agtaacggtt tgactgctgc ttcccagccg
     1141 gctttgtctc gggctccgat gatcttttgc ctgatgcgtc cctggcgatc gatcaggtac
     1201 gtggtcggca aaactgactg cgcgaatttt actttggcat cactgccgcc gatcaagacc
     1261 tggtaatcaa acttcacgac ttcctgctga gattgattga cgccttcgat gctgtcgtcg
     1321 agcgaagcgc cgacgatgtg caggccctgc gccttgagct cttgttgtag ctcgttcagc
     1381 gcgggtattt cttcgcggca cggaatgcag taagtggccc agaagttcag catcacgacc
     1441 tggccttgca gtgatttcaa actgtaggcc tcgtctgcga gcgtgcgaaa ttcgacgtcc
     1501 ggcaagggtt cgtagctggc gtttgcgggc ggcgggtcgg gtggtttcgc tgccggtccc
     1561 ctcagcttaa agaggttttc aagattcgga atcaacgcaa cgagttgcga attcgccagt
     1621 tgagccaatt taccgctcat caccagtccg ccgatgagaa tcaacacgac acccgaaacc
     1681 acttcgactt tgtgcaggtg tctgcggaag ttcttgtaaa aaccgagaaa cttgttgatg
     1741 ccgaggccgg tcaacagaaa cggcactgca agacctgcgg agtagaaagc cgacagtaac
     1801 aatccgttac gccaaccgcc gctcgttgct gccaggccga tgat
//
LOCUS       DASWTX010000650         1631 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_161280, whole genome shotgun sequence.
ACCESSION   DASWTX010000650 DASWTX010000000
VERSION     DASWTX010000650.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1631)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1631
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161280"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1089)
                     /locus_tag="VGD38_09940"
     CDS             complement(<1..1089)
                     /locus_tag="VGD38_09940"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEY0728379.1"
                     /translation="MRPRTLLLILVLVLLVWPAGCAQQNSRQLTLALIEGVEGEALKQ
                     AAQDYETQTGVRINFVQLPYQNLYEKEFIDLNARTGAYDLIMLDDPWFPRFASKEFLT
                     DLTPLLQKRGQSGPDADFVEASVNVCRHPYQTGALYALPYVGNSQLFFYRKDLFEKHG
                     LKQPATWDDVLAAAQVIQERETSANGGKMYGYVMRAAQGNAAVADFMPIFWAFGAEMF
                     DEDGKSTVNSPEGIAALEFMLALGKVSPPGYASFNADEVSAHLLQGTAAMSINWPAWI
                     SAFSDPARSKVIGKIEFTTLPGAGKPGQAEIGNWLIAIPRYSQNTEAAMDFLLWATSA
                     EQMKRSAWRGNPPTRKSLFQDAELVAKFP"
     gene            1130..>1631
                     /locus_tag="VGD38_09945"
     CDS             1130..>1631
                     /locus_tag="VGD38_09945"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEY0728380.1"
                     /translation="MRQIVNTGTGGVEVLQVQEKPDPTPRAGEVVIRVRAAGLNFADI
                     LARQGLYPDGPPKPCVMGYEVSGVIESVGEGVNSDFVGKSVAAMTRFGGQSEMVAVKA
                     AQVFDKPASLTFEQTAAIPVNYLTAYALLVVMGSLHAGESILIHNAGGGVGLAALDIA
                     KKIGAVT"
BASE COUNT          314 a          458 c          502 g          357 t
ORIGIN      
        1 gggaaacttc gccaccagtt ccgcgtcctg aaacagcgac ttgcgcgttg gcggattgcc
       61 gcgccacgcg gatcgtttca tctgttccgc gctcgtggcc cagaggagga agtccattgc
      121 tgcttccgtg ttctgcgagt agcgcggaat cgcgatcagc cagttgccaa tctccgcctg
      181 gcccggcttg cccgcgcccg gcagcgtggt gaactcgatc ttgccgatga ctttcgatcg
      241 ggccggatcg ctgaacgcgc tgatccacgc gggccagttg atcgacatcg ccgccgttcc
      301 ctgcaacagg tgcgcgctta cttcgtcggc gttgaaactc gcgtaacccg gcggcgaaac
      361 tttacccaac gccaacataa actcgagcgc cgcgatccct tcgggactgt tcaccgtcga
      421 cttgccatcc tcgtcaaaca tctccgcgcc aaaagcccag aagatcggca tgaaatcggc
      481 gacggcggcg ttcccctgcg ccgcgcgcat cacgtagccg tacatctttc cgccgtttgc
      541 gctggtttct ctttcctgaa tcacttgtgc cgccgcgaga acgtcgtccc acgtcgcagg
      601 ttgtttcagt ccatgcttct caaaaagatc tttccgataa aagaacaact gcgagttgcc
      661 gacgtaaggc agcgcgtaaa gcgcgccggt ttgatacgga tgacggcaaa cgttaacaga
      721 agcctcgacg aagtcggcgt ctggtccgct ttgcccgcgc ttttgcagta ggggcgtcag
      781 gtcggtcaga aactccttgc ttgcgaaacg tggaaaccac gggtcgtcga gcatgatcag
      841 atcgtaagcg ccggtccgcg cgttgagatc tataaattct ttctcataaa gattttgata
      901 aggaagctgc acgaagttta tgcgcacgcc ggtctgcgtt tcgtaatcct gcgcggcttg
      961 tttgagtgct tcaccttcga cgccttcgat cagggcgagt gtcagttgcc tggagttttg
     1021 ttgtgcgcaa ccggcaggcc agaccagaag gaccaggacc agaatgagta ggagtgttct
     1081 tggacgcata tttatttgtg cgacagctta acactgttaa gatgaggccg tgcgacaaat
     1141 tgtaaatacc ggaacgggcg gcgttgaggt gctgcaggtc caggagaagc cggacccgac
     1201 gcctcgcgcg ggtgaggtcg tgatcagggt gcgtgcggcg ggactcaact tcgccgacat
     1261 tctcgcgcgg cagggactct atccggatgg accgcccaag ccctgcgtga tgggttatga
     1321 agtgagcggc gtgatcgagt cggtcggcga gggagtgaat agtgatttcg tcgggaagtc
     1381 tgtcgcggcg atgacgcgct ttggtggtca atcggagatg gtcgccgtga aagcggcgca
     1441 ggtgtttgac aagcctgcat cgctgacgtt cgaacagact gcggcgattc cggtgaacta
     1501 tctgacggcg tatgcgctgt tggtcgtgat gggctcactg cacgcgggcg agtcgatcct
     1561 gattcacaac gcgggtggcg gcgttgggct tgccgcgctc gacatcgcga agaagatcgg
     1621 cgccgtcact t
//
LOCUS       DASWTX010000651         2153 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_161360, whole genome shotgun sequence.
ACCESSION   DASWTX010000651 DASWTX010000000
VERSION     DASWTX010000651.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2153)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2153
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161360"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..394)
                     /locus_tag="VGD38_09950"
     CDS             complement(<1..394)
                     /locus_tag="VGD38_09950"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0728381.1"
                     /translation="MTTSTSDRGRVLIVDDDQKILDLLVELLELEGYEVAAAADGAEG
                     LELAHSFDPNVVVSDVVMPVVGGLELCRKLKEDPRTAYIPVLLISGIRKSDDAGIEGL
                     YAGADDYLDLPFRNEELLVKVARLVERHR"
     gene            complement(564..1616)
                     /locus_tag="VGD38_09955"
     CDS             complement(564..1616)
                     /locus_tag="VGD38_09955"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0728382.1"
                     /translation="MSAMSEASVSAAGPMAVPSPSPTPRREELPQDSDEVVKFDTNLT
                     NIFFTAADKNKRFISDLKAGDIRVLEDGQPQEIFTFQTNIDLPLSLAILIDTSASEER
                     TLPDLKVAARAFLENMMRANSDEAAIISFTGETTLEQGFTGNVERLRRAIDRVEFVPP
                     SGYIGGVVVNGTPPISGTNQSLAGSTAIWDAVWATAEELISASAEHTRRAIILLTDGD
                     DTSSRMKIQDAIERAQKADALIYAIGIGDRYTFNVNEGALRKIAEATGGRAYFPHHER
                     DLNDAFSQIQRDLREQYLVAYSPSNKARDGSYRRIEIQLINPALRQQNLKLNYRNGYF
                     AKTANPETPGKKRGQD"
     gene            complement(1718..>2153)
                     /locus_tag="VGD38_09960"
     CDS             complement(1718..>2153)
                     /locus_tag="VGD38_09960"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0728383.1"
                     /translation="GRRVLLLVTDGEDTYSRANIRDAIDIAQRTETTIFAISTKAGFL
                     ATVPGVEAGQVADKKDRDLQTLAEETGGFAFFTGDMLSLERSFTRISKELRAQYLVTY
                     NPTNKSYDGTFRKIDVKLSDGHGDLKVRTKRGYKAIADSVMP"
BASE COUNT          417 a          594 c          642 g          500 t
ORIGIN      
        1 tgcgatgacg ttcgacgagc cgcgccactt tcacgagcag ttcttcgttg cgaaaaggaa
       61 gatcgagata gtcgtcggcg ccggcgtaga gcccttcgat gcccgcgtcg tccgacttgc
      121 gaatgccgct gatcagcagc acgggaatgt aagccgtgcg cgggtcttcc ttcagtttcc
      181 ggcacaactc cagaccaccg acgaccggca tcacgacgtc gctgacgacc acgttcggat
      241 cgaacgaatg cgcgagttcg agtccctccg cgccatcggc ggcggcggca acttcgtaac
      301 cttcaagttc caggagctcg acgagaagat cgagaatctt ctgatcgtcg tccacgatca
      361 gtactcggcc tcggtctgag gtgctggtag tcatctatgt gcgtttttcc gaacgacttt
      421 cgagaaatta cctcgggagg accagttgga gtgcgggagt tctggcgcca cagacacgct
      481 ggcgggaagg agtataacag gtttaacgaa accttgtcac tgcgttagtt tgcgggattt
      541 cggtgcgaaa ttgcgctgtg aaactagtcc tgaccgcgct ttttgcccgg agtttccggg
      601 ttcgcagttt tggcgaaata gccgttgcga tagtttagtt tcaggttctg ttggcgcaga
      661 gctggattga tcaactggat ctcgatgcgg cggtatgagc cgtcgcgggc cttgttgctc
      721 ggcgagtagg cgacgaggta ctgctcgcgc aggtcgcgtt gaatctggct gaaagcatcg
      781 ttgaggtcgc gttcgtggtg gggaaaataa gcacggccgc cggtcgcttc tgcgatcttt
      841 cgcagcgcgc cttcgttgac gttgaacgtg taacggtcgc cgattccgat cgcgtaaatc
      901 agagcatcgg ctttttgggc gcgctcgata gcgtcctgga tcttcatccg gctgctggtg
      961 tcgtcgccgt ctgtcagcag gatgatggcg cggcgcgtgt gttcggcgga tgcgctaatc
     1021 aactcttcag cggtggccca aacggcgtcc caaatcgcgg tcgagccggc gagactctga
     1081 ttcgttcccg agatcggggg cgttccgttc accaccacgc cgccgatgta gcctgacggc
     1141 ggaacgaact caacacgatc gatcgcgcgg cggaggcgtt ctacgtttcc agtgaagcct
     1201 tgttcgagcg tggtctcacc ggtgaacgaa atgatcgcag cctcgtcgct attcgcgcgc
     1261 atcatgtttt cgagaaacgc gcgcgccgcg actttcaagt ccggcagggt gcgttcttct
     1321 gacgcgctgg tgtcgatcag gatcgcgagc gagagcggta aatcgatatt tgtttgaaac
     1381 gtgaagatct cctgcggctg tccgtcttcc agcacgcgaa tatctccggc tttgagatcg
     1441 ctgatgaacc gtttgttttt gtcggcagcg gtgaaaaaga tgttcgtgag attggtatca
     1501 aacttgacga cttcgtctga gtcctgcggc aactcttcgc gccgcggagt cggcgaagga
     1561 gacgggaccg ccattggtcc agcggccgag acactcgcct cgctcatcgc agacatcgcc
     1621 acgcctccac acagcagcgt agcaacaacg aggagtaaaa caaataagcg agtcaattct
     1681 cggtaacgca ttattgaaaa actctcccgg caaacttcta cggcatcacg ctatcggcga
     1741 tggctttgta gccgcgtttc gttctgactt ttagatcgcc gtgaccgtcg gacagtttca
     1801 cgtcgatctt gcgaaatgtg ccgtcgtaac tcttgttcgt cgggttgtaa gtaaccagat
     1861 actgtgcgcg caactctttc gaaattctcg tgaacgagcg ctcgagcgaa agcatgtcgc
     1921 ccgtgaagaa cgcgaaaccg ccggtctctt ccgcgagcgt ttgcagatcg cgatctttct
     1981 tgtcggccac ctggcctgct tcgaccccgg gcacggtggc gagaaatccc gccttcgttg
     2041 agatcgcaaa aatcgtcgtt tcggtgcgtt gcgcgatgtc gattgcgtcg cgaatgttgg
     2101 cgcgactata ggtgtcttca ccgtcggtca cgagcaacag cacgcgacgt ccc
//
LOCUS       DASWTX010000652         1505 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_53461, whole genome shotgun sequence.
ACCESSION   DASWTX010000652 DASWTX010000000
VERSION     DASWTX010000652.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1505
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53461"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            101..>1505
                     /locus_tag="VGD38_09965"
     CDS             101..>1505
                     /locus_tag="VGD38_09965"
                     /inference="COORDINATES: protein motif:HMM:NF024810.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kelch repeat-containing protein"
                     /protein_id="HEY0728384.1"
                     /translation="MFSPTRRFSTSQTHRRFRFVALLALIAIAGAALAASSSSASSLG
                     RLLFAKATSVVAGGPAPTRASHADHAFEAEFATQSSTMETERRGHTATRLSDGRVLIA
                     GGENGGGVLNEVEIYDPSTSTFAVAGNMNDARADHTATLLGDGRVLIAGGRNGAGALT
                     STEIFDPATGAFTSGPSMSVARAGHSATLFADGRVFVAGGDASGTAEVLNSALSGFSS
                     AGSLNTARAMHSAALLQDGRVLLVGGRNGAAELSSGEIFDTGAFSTVDSVLRVARVRP
                     HLRVLFDGKVQIIGGSNDGSMEVYDPVYEGFGAYAHVLPEGDPCAGLAGQILNSQTRA
                     ALFHNGQADPLFDRSGHTITELGGQALVLGGANSSGAVLNSSSVVGSSGAAISTDKMD
                     YSPGEIAHISGRGFQPGETVRLKVHEDPHTPQERGLDVVADGQGNFVGDYLVTEYDLD
                     MKFIVGARGLTSGFTAQT"
BASE COUNT          266 a          376 c          517 g          346 t
ORIGIN      
        1 agtctgcgat acggcgtttc aagccgaaga agcccaaacc attaccccga ccgtggctaa
       61 ccaccgcggc gaatctactt ttttaggagc ttccatgaga atgttttccc cgacccgccg
      121 tttttctacc tcccaaacac atcgccggtt tcgctttgtt gcgctgcttg cgttgatcgc
      181 gatcgccgga gcagcactgg cggcgagcag ctcgtctgcg agttcgcttg ggcggttgtt
      241 gtttgcgaag gcgacttcgg ttgttgctgg tggaccagca ccgacgagag cgtcgcacgc
      301 ggatcacgcg ttcgaagcgg agtttgcgac tcagagttca accatggaga ccgagcggcg
      361 tggacacaca gccacacgct tgagtgacgg acgtgtgttg attgcgggtg gtgagaatgg
      421 cggcggcgtg ttgaatgagg tggagattta cgatccatcg acttcgacct tcgcggtagc
      481 gggaaacatg aacgacgcgc gtgcggatca tacggcgacg ttgctcggcg atggacgcgt
      541 gttgattgcc ggcggtcgca acggtgcggg cgcgcttacg tccaccgaga tcttcgatcc
      601 ggcgactggc gcgtttacca gtgggccatc gatgagcgtt gcgcgtgccg gacacagtgc
      661 gacgcttttt gctgatggtc gtgtgttcgt tgcgggtggt gatgcgagtg gtacggctga
      721 ggttctcaac tccgcgttat cgggtttcag ttcagcgggc agtttgaaca ctgctcgtgc
      781 gatgcactcc gcggcgttgt tgcaggacgg gcgtgtgttg cttgtcggcg gcaggaatgg
      841 cgctgcggaa ctgagttcgg gtgagatctt cgacacggga gcgttttcga ctgtcgacag
      901 cgtgctgagg gtcgcgcgcg tgcggccgca cttgcgtgtg ttgttcgacg ggaaggtcca
      961 gatcatcggc ggcagtaatg atggatcgat ggaagtttac gatccggttt atgaaggctt
     1021 tggtgcgtat gcgcacgtgc tgccggaagg cgatccgtgc gcaggtttag ctggacagat
     1081 tcttaattcg caaacgcgtg cggcgctgtt tcataacgga caggcggacc cgctcttcga
     1141 tcgtagtgga cacacgatca cggaattggg cggacaggcg ctcgtgcttg gcggtgcgaa
     1201 tagcagtggc gctgtgttga actcgagttc tgtggtcgga agttcgggtg cggcgatttc
     1261 gacggacaag atggattact cgccgggcga gatcgcgcac atcagtggcc gcgggtttca
     1321 gccgggtgaa actgtgcgct tgaaggttca cgaagatccg cacacgccgc aggagcgcgg
     1381 gttggatgtt gttgctgacg ggcagggtaa tttcgtcggc gactacctgg tgacggaata
     1441 cgatctcgac atgaagttta tcgtcggcgc gcggggtttg acgtccggtt tcacagcgca
     1501 aacca
//
LOCUS       DASWTX010000653         3391 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_359435, whole genome shotgun sequence.
ACCESSION   DASWTX010000653 DASWTX010000000
VERSION     DASWTX010000653.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3391)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3391
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_359435"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1582
                     /locus_tag="VGD38_09970"
     CDS             <1..1582
                     /locus_tag="VGD38_09970"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY0728385.1"
                     /translation="GAVIFLLLIACANVANLMLVRASSRQRELAVRAALGAGWWQLIR
                     QTLAEAIVLAAIGTIIGVGLAYLGIRQLLLIAPENLPRLNAVGIDWQVLAFSVLAGLL
                     CAALFGVIPALRTAKPNLMETLRAAGRSAALGAAGLRNAVVVVEVALAFVLLIGSGLM
                     FRTFLNIQRVNLGFDPQGLLTFQLLGNIGNSPQEAANFKRQLREQLDALPGVTGVTAS
                     FPLPLAGGFTPVRWGGAEAQADPSKFQAADFQVVLPGYFEAMGTTLLAGRTFTEADST
                     PDRNLIIVDQALAAKAFPNESAVGKKILYRVRTPEAQWGEIIGVVAHQRNTSLIEPGR
                     EQLYVTDGYVNHQAASWWAVRTDGDPSALAGAVREVVRNTGKETFIHQMQPMETLVTA
                     AQAQTRFSLLLIGVFSTIAALLAGVGLYGVLATSVRQRTAEIGVRMALGAAPSRIFRL
                     MVGKGLFLSCIGIAIGLVAAFLLTRVLASMLVEVKPTDPVTFISVAALFLLIALLASW
                     LPAHRAAGLDPTTALRQE"
     gene            1763..2110
                     /locus_tag="VGD38_09975"
     CDS             1763..2110
                     /locus_tag="VGD38_09975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728386.1"
                     /translation="MKRSVKPTRKRPAKRDLFAELKEGFDALAEARQGKRTLRTHSVE
                     FKPAPTLTPKELIRVRKNLKLSRALFAVYLRTNVRTLENWEQGRAKPNAQAALLINLV
                     KNYPDTVQRLASI"
     gene            2121..2546
                     /locus_tag="VGD38_09980"
     CDS             2121..2546
                     /locus_tag="VGD38_09980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728387.1"
                     /translation="MEEEIRANAEMVGRELGKLSGKELGYTQEGVEWLEGYIERLRNS
                     AEFQDAEIRNKLTGMFGCFLGECIVRQYGGAWVQHEGVWCVAFSDDNMAFPFAKVAKQ
                     FENGLEDGILSFFSVIPVLFKGGEPSVTPTSQKPWWKFW"
     gene            complement(2585..3247)
                     /locus_tag="VGD38_09985"
     CDS             complement(2585..3247)
                     /locus_tag="VGD38_09985"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEY0728388.1"
                     /translation="MSKVLISLCAFLMLVIAPSVKADPIAVTSGSLTVPGFLRAPQYS
                     FAGQNFSVTGHGSEFGSSPNCFPCKSGDLLGVNSLFVGGSLGLGSLTFNGTTFENLFF
                     GGGFQFTGNPILVPAGLTNISLTAPFMFSGNLAACPLEAGGPDCTPAKQIFSAQLVGQ
                     GFVTLQLRFLQLNAAGASLYQLDNVTYTFQSAEIPEPMTLTLLALGLTGLAVRRKFGK
                     RC"
BASE COUNT          710 a          878 c         1052 g          751 t
ORIGIN      
        1 gggcgcggtc atattcctgt tgttgattgc gtgtgcgaac gtcgcgaacc tgatgttggt
       61 aagagcttcg tcgcgccaac gagaactcgc ggttcgggct gcgctcggcg ctggctggtg
      121 gcagttgatt cggcaaacac tcgccgaggc gatcgtgtta gctgcgatcg gaacgatcat
      181 cggagtcggg cttgcttatt taggcattcg ccaactgctt ttgatagcac cggaaaattt
      241 gccgcgcttg aatgcggtcg ggattgattg gcaggtgttg gcgttttctg tgttggcggg
      301 tttgttgtgt gcagcgctct ttggagtgat ccctgcgctt cgcaccgcca aaccgaatct
      361 catggaaacg ttgcgtgctg ccggacgaag tgccgcgctc ggtgctgccg ggttgcgtaa
      421 tgccgtcgtc gtggttgagg tcgcgcttgc gtttgtgctt ttgattggtt cggggttgat
      481 gttccgcacg ttcctgaaca ttcagcgtgt gaatctcggg tttgatccgc aggggttgtt
      541 gacgtttcaa ctgctcggca acatcggcaa ctcgccgcag gaagcagcga acttcaagcg
      601 acagcttcgc gagcaactcg atgcgcttcc gggtgtgacc ggtgtcaccg cgtcttttcc
      661 gttgccgctt gcaggtgggt ttacgccggt gcgttggggt ggagccgaag cgcaagcgga
      721 tccgagtaag tttcaagccg cggattttca ggttgtgctg cctggttatt tcgaggcgat
      781 gggtacgacg ctgctggccg gacgcacttt cactgaagcc gacagcacgc ccgatcgcaa
      841 tctgatcata gttgaccagg cgttggcggc gaaggcgttt ccaaacgaat ctgcggttgg
      901 gaagaagatc ttgtatcgcg tgcgcacgcc tgaggcgcag tggggcgaga tcatcggtgt
      961 ggtggcccat cagcgcaaca catcgctgat cgagccgggc cgcgaacagc tctacgtcac
     1021 cgacggatat gtgaatcacc aggctgcttc gtggtgggcc gtgcgtacgg atggagatcc
     1081 gtccgcgctt gcgggcgccg tgcgcgaagt ggttcgcaac accggcaagg aaacctttat
     1141 ccatcagatg cagccgatgg agacgcttgt gaccgcggcg caggcccaga cacgtttctc
     1201 gctgttgttg atcggagtct tctccacgat cgcggcgctg ctcgcgggcg ttggtctgta
     1261 tggcgtcctc gccacttcgg tccgtcaacg aacggcagag atcggcgtac gcatggccct
     1321 gggcgccgcg ccctcgcgca tcttccgcct gatggtcggc aagggcctct tcctcagttg
     1381 catcggcatc gccatcggcc tcgtcgccgc cttcttgctg acgcgcgtcc tggcgagcat
     1441 gctggtggag gtcaaaccca ccgatcccgt gaccttcatc tcggtcgcag ctcttttcct
     1501 cctgatcgcc ctcctcgcct cctggctccc cgcccaccgc gccgccggac tggatccgac
     1561 gacggcgctg cggcaggagt agcttcgttg aacggtctat acgtaatttg cgtatagacc
     1621 tggtcgtaag taatatgggt gcgtgaaagc gattttcgtc gagctacctc cgttcgaaca
     1681 ctttagagct gattatctac gaaccccaac gtgaaacgct gaagcaaatg gtcaagaggg
     1741 aactcgaggt gaggagaaag caatgaagcg atcggttaaa cccacacgaa agcgtccagc
     1801 gaagcgtgat ctctttgccg aattgaaaga ggggtttgat gctctggctg aggcacgaca
     1861 gggtaagcga actcttagaa cacattctgt ggaattcaag ccggcgccca ctctcacgcc
     1921 gaaagaattg attcgtgttc gcaagaacct gaaactttcg cgggcactgt tcgcggtcta
     1981 tttacggact aacgtgcgca cgctggaaaa ctgggaacag ggccgtgcca agcccaacgc
     2041 gcaagccgcg ctattgatca atctcgtcaa gaactacccg gacacggttc aaaggttagc
     2101 tagcatctag gtttcacagc atggaagaag agatcagagc aaatgcggag atggtgggta
     2161 gggaactggg gaagctcagt gggaaggagt tggggtatac gcaagagggc gtcgagtggc
     2221 tcgaggggta tattgagcgg ctgaggaatt cggcggagtt tcaggatgcc gagattagga
     2281 acaagcttac gggtatgttc gggtgttttc tcggcgagtg catagttcgc caatacggcg
     2341 gcgcgtgggt tcagcatgag ggtgtgtggt gcgttgcttt cagcgacgac aacatggcgt
     2401 ttccgttcgc caaggttgcg aagcaattcg agaacgggct ggaggatggg attttgagtt
     2461 tctttagcgt gataccggtt ctgtttaagg gcggtgaacc ttcggtaacg cccacctctc
     2521 aaaagccgtg gtggaagttt tggtaaaggc ggggcgaacc aatcattgat gctgtgtctc
     2581 gccttcagca acgtttgcca aacttgcgcc tcaccgccag gcccgtcaat ccaagtgcga
     2641 gcagcgtgag tgtcatcggc tcgggaatct cggcgctttg aaaggtgtag gtgacgttgt
     2701 ctaactggta gagagaagca cctgcggcgt tgagttgcag aaagcggagt tgaagcgtta
     2761 cgaatccctg gcccactaac tgcgcgctga agatctgttt cgccggcgtg cagtccgggc
     2821 cgcccgcttc caatgggcac gccgccagat tacccgaaaa cataaacggc gcagtgagcg
     2881 agatgtttgt cagtccggca ggcaccagaa tcggattgcc cgtaaactga aagccgccgc
     2941 cgaaaaacag attctcgaaa gtcgtgccgt taaacgtcag actgccaagg ccaagactgc
     3001 cgccaacaaa caaactattc acgccgagca ggtcgccact cttacacgga aagcagttcg
     3061 gcgaagatcc gaattcgctg ccgtgcccag tcacggaaaa gttctgcccg gcgaacgagt
     3121 attgcggcgc gcgaagaaat cccggaactg taagagaacc gctggtgacc gcaatcggat
     3181 ctgctttgac agacggtgcg ataaccagca taaggaacgc gcataagctg atgaggacct
     3241 ttgacataga agtgctcctt gtaaacaaac cgagtagaag gttcaatgga cgggagatca
     3301 ggtcagtaaa caattgcggg tatgctgcgt gctaaggcta gagctgcgac cgcaggcact
     3361 cgatcttata acacagaaag agtttttatt g
//
LOCUS       DASWTX010000654         4626 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_7486, whole genome shotgun sequence.
ACCESSION   DASWTX010000654 DASWTX010000000
VERSION     DASWTX010000654.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4626
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7486"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..964)
                     /locus_tag="VGD38_09990"
     CDS             complement(<1..964)
                     /locus_tag="VGD38_09990"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0728389.1"
                     /translation="MKTIARELLFPLIAVVAAFIVGGILILLVGDNPIVAYRLLLGSA
                     LSWPDGIGYTLFHATPLIFTGLAVLVGFRCGLFNIGAEGQLYIAAFATAWVGITLANW
                     SSWILVPLCFAAAIFSGAFWGAIPGVLKARFGSHEVINTIMLNFIAVALVSYFTQYHY
                     KVPGDPILQTATIGEGAHIARLGSFVPGFPERIPLNVAFLLALLCCLLVYLFLWRTKW
                     GYEIRATGSNPTAAEYGGISIRKQIVLAMAVSGALAGMVGINEVLGYRYRYYDGFSDN
                     YGFTGIAVALLGRNHPVGVIFAALLFAMLQHGGIYVDGFSEHVTK"
     gene            complement(973..2484)
                     /locus_tag="VGD38_09995"
     CDS             complement(973..2484)
                     /locus_tag="VGD38_09995"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0728390.1"
                     /translation="MLELREITKRFGDVLANDHVNIAVKPGTIHAIVGENGAGKSTAM
                     RIAYGFYTPDSGEILVDGQVRDIKSPHDAIALGIGMVHQHFMLVETMTVAENIVLGAE
                     PGSALALDLKSAAAQIRQLSEEFKLAVNPNEPVEHLSVGQQQRVELLKALYRHARLLI
                     LDEPTAVLTPLEVEEFFGILRRMREQGKTVIIITHKLSEVLAISDEVTVMRDGKVVGR
                     VQTKDTNAAELARMMVGREVLLRVEKPDPQVGSTALEVRDLSVMTATGAKRVDNISFQ
                     VRSGEIVGIAGVEGNGQTELIEALAGLVEPAQITGEIRADGRSINTLGARVRRELGIA
                     HIPEDRHRRGLLLDFSLAENSILGVHYRPPIAAYTGNVFLDENAIQRRATEIIEGFDV
                     RPRNAALPARALSGGNQQKLIIGREYHVNPKVLLVSQPTRGVDIGAIEFIHRQLVALR
                     DQGCAILLVSAELEEVTSLSDRLLIIHEGRIAGEVDPKVATLEEIGLLMTRGH"
     gene            complement(2497..3528)
                     /locus_tag="VGD38_10000"
     CDS             complement(2497..3528)
                     /locus_tag="VGD38_10000"
                     /inference="COORDINATES: protein motif:HMM:NF014647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family ABC transporter substrate-binding
                     protein"
                     /protein_id="HEY0728391.1"
                     /translation="MKYKIFVLLGLLGALTFALSGCGGAAAAEDPTKIKVGIVFDIGG
                     KDDRSFNAAAWEGVQRAAKDLPIVLRDIEPGTPNAIEPAMRAFAERNFDLIIGVGFAQ
                     APIMEQVAKDYPNIQFAIIDGVSKLPNVASLVFKEHEGSYLVGILAAKASQTGTIGFL
                     GGMDIGLIHRFATGYEEGAKSVNPNIRVYKNYVGVTDAAWNNPGKGKELALSQISKGA
                     DVIFTAAGNSGLGAFDAVEQQGKQNGRATHFVIGVDSNQNMVKPGFVLSSMVKRVDNA
                     VYDIVQDVVNHRFSPGLHVFGLDKDGVGYAMDQFNQDLVTPEAIQEAEAAKKKIIAGE
                     IKVTDAMGS"
     gene            complement(3525..>4626)
                     /locus_tag="VGD38_10005"
     CDS             complement(3525..>4626)
                     /locus_tag="VGD38_10005"
                     /EC_number="2.4.2.4"
                     /inference="COORDINATES: protein motif:HMM:NF004490.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006206 - pyrimidine nucleobase metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="thymidine phosphorylase"
                     /protein_id="HEY0728392.1"
                     /translation="PKPKADKHSTGGVGDKTSIIIAPLVAACGVCVPMISGRGLGHTG
                     GTLDKLESIPGYSVNLSATEFKKVLQDVGYAMAGQTAELAPADKKMYALRDATSTVEA
                     IPLIVASIISKKGAAGLDAMIIDVKVGNGAFMREESRARDLAHALVSTGNSCGIKTRA
                     LLTDMNQPLGSAVGNSLEIKECIEILRGEASEGAEPVLDISLELSAHMLVLANVDDTI
                     EAARERLQGVLRSGEALECLRRNIAAQGGEPRVCDQPDAFLPLVRESVKVESPRSGYI
                     TSVDTTEIGHAIAAIGGGRVRIEDTIDPTVGFISELKLGEQVRSGEGFGVVYCADKDA
                     AKEAARRIQAAYHVGDEPPGQVEKLVKEIVNE"
BASE COUNT          955 a         1425 c         1303 g          943 t
ORIGIN      
        1 ctttcgtcac gtgctcggag aaaccgtcga cgtagatgcc gccgtgctgc aacatcgcaa
       61 acagcaacgc cgcgaagatc acaccgaccg gatgattgcg tccgagcagt gcgacggcga
      121 tgcccgtgaa tccgtagtta tctgagaaac cgtcgtaata acgataacga taaccaagca
      181 cttcgttgat gccgaccata cccgcgagcg cgcccgaaac agccatcgcc agcacgatct
      241 gcttgcgaat cgagataccg ccgtactcag cagcggtcgg attgctgccg gtcgcgcgta
      301 tttcgtagcc ccacttcgtg cgccacaaaa acaggtagac caacagacag caaagcagtg
      361 cgagaaggaa agcaacgttc agcggaatac gttccgggaa accgggaaca aaagagccga
      421 gacgagcaat gtgagcgccc tcgccgatcg tcgcggtttg caggatcgga tcgccgggaa
      481 ccttgtagtg atactgagtg aagtaactga cgagcgcgac cgcgataaag ttcaacatga
      541 tcgtgttgat gacttcgtgc gaaccaaaac gcgcttttaa cacaccggga atcgcacccc
      601 aaaacgcgcc gctaaagatc gccgccgcaa aacagagcgg cacgagtatc catgaagacc
      661 agttcgcgag cgtgattcca acccacgcgg tcgcaaacgc cgcgatgtag agttgtcctt
      721 ccgcgccgat gttgaataga ccacaacgaa acccgacgag cacggcgaga cccgtgaaga
      781 tcaacggcgt cgcgtgaaag agcgtgtaac cgatgccgtc gggccacgag agcgcgctgc
      841 cgagcaagag ccgatacgca acgataggat tgtcgccgac gagcaggatc agaatgccgc
      901 cgacaatgaa agccgcgacg acggcaatga ggggaaagag cagttcgcgt gcgattgtct
      961 tcatccgtct ggttaatggc ctctcgtcat caacaaccca atctcctcta acgtcgcaac
     1021 cttcggatcg acttcacccg caatccggcc ttcgtgaata atcaacagtc gatcggaaag
     1081 actcgtcact tcttccagct ccgccgacac cagcaggatc gcgcagccct gatcgcgcag
     1141 tgccaccaac tgccggtgaa tgaactcgat cgcgccgatg tcgacgccac gcgtcggttg
     1201 tgaaacgagc agcactttcg gattcacgtg atactcacgg ccgatgatga gcttttgctg
     1261 gttaccgccg gagagcgcac gcgcgggcag cgcggcgttg cgtgggcgaa cgtcgaagcc
     1321 ttcgatgatc tcggtcgcgc gtcgctggat cgcgttttcg tcgagaaaga cgttgccggt
     1381 gtacgcggcg atcggcgggc ggtaatgcac accgagaatc gaattttccg cgaggctgaa
     1441 gtcgagcaac aaaccgcggc gatggcggtc ttcaggtatg tgcgcgatgc cgagctcgcg
     1501 tcgcacacgc gcgccaagcg tgttgatgct tcggccgtcc gcgcgaatct cgcccgtgat
     1561 ctgcgccggc tcgacgagac cagcgagcgc ttcgatcagc tctgtttgac cgtttccttc
     1621 gacgcccgcg atgcccacga tctcgccgct gcgaacctga aacgagatgt tatcgacccg
     1681 cttcgcgccg gtagcagtca ttacagacag atcgcggacc tcgagcgccg ttgaaccgac
     1741 ctgtggatcg ggtttttcga cacgcaacag gacctcgcgg cccaccatca tgcgtgcgag
     1801 ttcggcggcg ttcgtgtctt tcgtctgtac tcggccaacc accttgccat cacgcatcac
     1861 tgtgacttcg tccgagatgg ccagcacttc ggaaagtttg tgggtgatga tgatgacggt
     1921 cttgccctgt tcgcgcatgc ggcgcaggat gccgaagaac tcttccactt ccagcggcgt
     1981 caacactgcg gtcggttcgt cgagaatcaa caaacgcgcg tgacgataga gcgccttcaa
     2041 cagttcgaca cgctgttgct ggccgactga aagatgttcg accggttcgt tgggattgac
     2101 ggcaagtttg aattcttcgg agagctgtct gatctgcgcg gccgcgctct tgagatcgag
     2161 cgcgagcgca ctgccgggtt cggcgccgag cacgatgttt tccgcgaccg tcatcgtctc
     2221 gaccagcatg aagtgctggt ggaccatgcc gatgccgagc gcgatcgcgt cgtgcggcga
     2281 cttgatgtcg cgcacctgac cgtcaaccag aatttcgccg gaatcaggcg tgtaaaaacc
     2341 gtaggcgata cgcatcgccg tcgacttacc ggcgccattc tcacctacga tggcatggat
     2401 tgttccgggc ttaacggcga tgttgacgtg atcgttagcc agtacgtcgc cgaagcgttt
     2461 tgttatctct ctgagttcga gcatcgaggc tgagacttaa cttcccatcg cgtccgtcac
     2521 tttgatctcg cccgcgataa tcttcttctt cgcggcttcg gcttcctgaa tcgcttcggg
     2581 cgtgacgagg tcctgattga actggtccat cgcgtagccc acgccgtctt tgtccaagcc
     2641 gaaaacgtgc aggcccggtg agaagcgatg attcacgacg tcctgaacga tgtcgtacac
     2701 cgcgttgtcc acgcgcttga ccatgctgct gagcacaaag cccggcttca ccatgttttg
     2761 atttgaatcc acgccgatga cgaaatgcgt ggcgcgcccg ttctgttttc cctgttgctc
     2821 gacggcgtca aacgcaccga gaccggagtt gccggcagcg gtgaagatca catcagcgcc
     2881 tttgctgatc tgcgacaacg cgagttcctt gcccttgccg ggattgttcc aggcggcgtc
     2941 agttacgccg acgtagtttt tgtacacgcg gatgtttgga ttaactgact tcgcgccttc
     3001 ttcgtagccc gtcgcgaagc gatgaatgag tccgatatcc atgccgccga gaaaaccgat
     3061 ggttcccgtt tgcgacgcct tcgccgcgag aatgccgacg agatacgaac cttcgtgctc
     3121 cttgaaaacc agcgaagcaa cgttcggcaa cttgctgacg ccatcgatga tggcaaactg
     3181 gatgttcgga tagtccttcg cgacctgctc catgatcggc gcctgcgcga agccgacgcc
     3241 aatgatcaga tcgaagttgc gttcggcaaa cgcgcgcatg gcaggctcga tggcgttcgg
     3301 cgtgccgggt tcgatgtcgc gcaagacgat cggcaagtct ttcgccgcac gctgcacacc
     3361 ttcccacgcc gccgcgttga atgagcgatc gtccttgccg cctatgtcaa aaacgatgcc
     3421 gaccttgatc ttcgtaggat cttcggccgc ggccgctccg ccacaacccg ataacgcaaa
     3481 cgtcagcgcg cccagtaatc caagcaggac aaaaattttg tatttcattc gttgacgatt
     3541 tccttaacga gcttttcgac ctggccgggc ggttcatcgc cgacgtgata cgcagcctga
     3601 attcgccggg ccgcttcttt cgcggcgtct ttgtcggcgc aataaaccac gccgaatcct
     3661 tcgccgctcc tcacctgctc gcctaacttc agttcggaga taaagccaac cgtgggatcg
     3721 attgtgtctt cgatgcgcac gcgcccgccg ccgattgccg cgatcgcgtg accaatttcc
     3781 gtcgtgtcga cacttgtgat gtagccagag cgcggggatt ctaccttaac gctttcgcgt
     3841 accaaaggca gaaacgcgtc cggctgatcg caaacgcgcg gctcgccgcc ctgcgccgcg
     3901 atgttacgcc gcaaacactc gagcgcttcg cccgatctca acacaccctg aagacgctcg
     3961 cgcgcggctt cgatcgtatc gtcgacattc gccagcacga gcatgtgcgc cgagagctca
     4021 agcgaaatat cgagcacggg ttcggcgcct tcgctcgctt cgccgcgcag gatctcgatg
     4081 cactctttga tttccaacga atttccgacg gcggaaccga gcggctggtt catgtccgtc
     4141 aataacgcgc gcgtcttgat gccacacgaa tttcccgtgc tcacgagcgc gtgggccaag
     4201 tctcgcgccc gcgactcttc gcgcatgaac gcgccgttcc caaccttcac gtcgatgatc
     4261 atcgcgtcga gaccggcggc gccctttttc gaaatgatcg acgcgacgat gagcgggatc
     4321 gcttcgacag tcgacgtcgc atcacgcaac gcgtacatct tcttgtcagc cggcgcgagc
     4381 tccgccgttt gtcccgccat cgcataaccg acgtcctgca acactttttt gaactcagtc
     4441 gcgctgagat tcacgctgta accgggaatc gactcgagct tgtccaacgt gccgccggtg
     4501 tggcccaggc cgcggcccga gatcatcggc acacacacgc cacacgccgc aaccaaaggc
     4561 gcgatgatga tcgaggtctt gtcgccgacg ccgcccgtcg agtgtttgtc ggctttgggt
     4621 ttggga
//
LOCUS       DASWTX010000655         3275 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_161397, whole genome shotgun sequence.
ACCESSION   DASWTX010000655 DASWTX010000000
VERSION     DASWTX010000655.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3275)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3275)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3275
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161397"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..946)
                     /locus_tag="VGD38_10010"
     CDS             complement(<1..946)
                     /locus_tag="VGD38_10010"
                     /inference="COORDINATES: protein motif:HMM:NF025617.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4350 domain-containing protein"
                     /protein_id="HEY0728393.1"
                     /translation="MRQRLTIILTFIVIIGALVVINTFSYVKQEKLQDSELFPNRSTY
                     HSGPTGARALHDFMSESGYKVIRWREAPERLLGQSGTNVSTFVVIGPTQLPFTDEQRT
                     ALHEWISRGGCFVLITREADLTRGAPPGDWALSSRTFDFPNFDTDPADVSKMTEDVTA
                     LKPVQPTSLTHNVASVLPSRFAARLTLTPTDGEPPKVAEKAPTPILGATDEEEDPWYE
                     EEGATAQASPPPPAVVVPDDTTGTIPAGPVVHIADKDGALLVDYAYGLGRIVILSDPY
                     LVTNSGIRSNDNLQLAINTLTLYDGLIAFDEYHQGRGVT"
     gene            complement(953..2023)
                     /locus_tag="VGD38_10015"
     CDS             complement(953..2023)
                     /locus_tag="VGD38_10015"
                     /inference="COORDINATES: protein motif:HMM:NF024948.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4129 domain-containing protein"
                     /protein_id="HEY0728394.1"
                     /translation="MLPGRTKIKSRFRWLLTALLLIVPATAFADTLRSEDYQRELQRA
                     IESLQSLQQINESETPDYYQEQFSRTSTTVREALPEKQTVQASDEVCEVDNTWVHTAL
                     EDFKSLTPEKRLTRLDQLIDRLRALEQRVAYQRRAATENDNKVYTKGKLESILGRPEY
                     ATVKPSENALEQLFKMIQEFIRWLLQFLPGPVKMSGGGSSWFTIVAQVVVLIVALLVV
                     LYVAKILIKRFGGKGRKRVTKKRKARIVLGEQLKPEDTSVNLLSEAEALARQGDLRAA
                     IRKAYIALLVELGDRKLITLAQHKTNRDYLNSVRNHSLLHSNMRGLTDSFERHWYGFD
                     EATENDWQNFRLRYQAALQTQN"
     gene            complement(2032..3114)
                     /locus_tag="VGD38_10020"
     CDS             complement(2032..3114)
                     /locus_tag="VGD38_10020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728395.1"
                     /translation="MSTALSPNQLPLAPLGAGDLIDRAVRLYRRHLFVLIRTAAPPVI
                     IAAAGWIVCSLAVQRLFLTPDMADLFMYGVLAFVSFCVMMGGYLFTLVVMGGATRTLV
                     AHLLRNEPVTARATYAAVRARFWGLLGASVVVLIWIGISLSAVWVVWYILMLMVTVLV
                     LVASVVASWLAAIIGIITGLLTVAVGLWMFFFIVGRVAYVPQVMLVEGKGVFEAFSRS
                     FSLARGNVRRLMAMTLFTTFAAYSALMILLVPLTWYGYLNGIDPFNSAQWPAWYSIAN
                     SVLGPLSSILLSPVWMLGLSLLYVDERVRHEGYDIELMAARQLGELPDVNVSSPLGTA
                     LSSISGKKQPPPAPPAPRSSGILNLS"
BASE COUNT          749 a          904 c          939 g          683 t
ORIGIN      
        1 gagtgacgcc gcgtccctga tgatattcgt cgaacgcgat cagtccgtcg taaagcgtca
       61 atgtattgat cgcgagttgt aagttgtcgt tcgaacggat accggaattt gtgacgagat
      121 atggatcgct caggatgacg atgcggccaa ggccgtacgc atagtcgacg agtaacgcac
      181 cgtctttgtc ggcgatatga accaccggac cggcagggat cgttccggtg gtatcgtccg
      241 gcacgactac ggcgggcggt ggtggtgatg cttgtgcagt tgcaccctct tcttcatacc
      301 atgggtcttc ttcttcgtcc gttgcaccga ggatcggagt cggcgccttt tcagcaacct
      361 tcggcggctc gccgtcagtg ggggtgagcg taaggcgcgc ggcaaagcgc gatggcaaca
      421 cggaagcgac gttgtgcgtc aggctcgtgg gttgcacggg cttcagtgca gtcacgtcct
      481 cagtcatctt gctgacgtcg gccggatcgg tatcgaagtt tggaaaatca aatgtcctcg
      541 aactgagggc ccagtcgccc ggaggcgcgc cacgcgtgag atcagcctca cgtgtgatca
      601 ggacaaaaca accaccgcgg ctgatccact cgtgcagggc cgttcgttgt tcgtcagtaa
      661 acggcaactg agtcgggcca atgacgacaa acgtcgaaac gttagtacca gactggccca
      721 acaacctctc cggagcttca cgccagcgaa tcactttgta acccgactcg ctcatgaagt
      781 cgtgcagcgc gcgcgcgcct gtcggtcccg agtgatacgt cgaacgattg ggaaacaact
      841 ccgagtcctg aagtttttcc tgtttgacgt aggagaaggt attgatcacg accagcgcgc
      901 cgatgatcac gatgaaggtc aggatgattg tgagtcgctg gcgcatcgtg aatcagtttt
      961 gggtttgcag cgctgcctga taacgcaagc ggaagttttg ccagtcgttt tcagttgctt
     1021 cgtcgaagcc gtaccagtgg cgctcgaaac tgtcggtcag tccgcgcatg ttcgagtgaa
     1081 gcagggaatg atttctgacg gagttcaggt agtcgcgatt ggttttgtgt tgcgcgagag
     1141 taatcagctt gcgatcgccg agctcgacca gcaacgcgat gtaggctttg cgaatggcgg
     1201 cgcggagatc gccctgacgt gcgagtgctt ctgcttcaga cagtaagttg acggacgtgt
     1261 cttccggttt cagttgctcg ccgagcacga tgcgcgcctt gcgtttcttc gtaacgcgtt
     1321 tccggccttt gccgccaaac cgcttgatca agatcttcgc aacgtaaaga acgacgagta
     1381 aggcaacgat cagcaccacg acctgggcca cgatcgtaaa ccagctcgac ccgccacccg
     1441 acatcttgac cggtcccgga aggaactgta gcagccagcg gatgaactcc tggatcatct
     1501 tgaataactg ctcgagcgcg ttttcgctcg gctttacagt tgcgtactca ggacgcccga
     1561 gaatgctctc gagctttcct tttgtgtaga ccttgttgtc gttctcggtc gctgctctgc
     1621 gttgatacgc gactcgctgc tcgagggccc tgagacgatc gataagctgg tccagccgcg
     1681 ttaagcgttt ttccggagtt aacgatttga aatcttcgag cgcggtgtgc acccacgtgt
     1741 tatcaacttc gcaaacttcg tcgcttgctt gcaccgtctg tttttcgggt aacgcttcgc
     1801 gaaccgtcgt cgacgtgcgg ctaaactgct cctggtaata gtcaggagtt tctgattcgt
     1861 tgatttgttg cagcgattgg agcgactcga tggcgcgttg cagttctctc tgataatcct
     1921 ctgaacgcag cgtatccgcg aatgcagtcg cggggacaat caggagaagt gcggtgagta
     1981 accaacgaaa gcgggatttg attttggttc ggcccggaag catcaccgtc gtcaactgag
     2041 attcagaata ccagatgatc tcggcgccgg aggcgcaggt ggtggttgtt ttttgccgga
     2101 gatcgatgag agagcggtgc ccaaaggcga tgagacattt acatccggca actcaccaag
     2161 ctgtcgcgcg gccatcagct cgatgtcgta accttcgtgt cgcacacgct cgtcgacata
     2221 aagcagtgag agtcccaaca tccaaaccgg gctcagtaga atcgagctca acgggccaag
     2281 cacgctgttg gcgatcgaat accacgccgg ccactgtgcc gagttgaatg gatcgatgcc
     2341 gttgagatag ccgtaccagg tgagcggcac cagcaggatc atcaacgctg agtaagctgc
     2401 aaacgttgta aacagcgtca tcgccatcag ccggcgcacg ttgccgcggg ccaaagagaa
     2461 actgcggcta aacgcttcga agacgccctt gccctcgacc agcattacct gcggtacgta
     2521 agccacgcgg ccgacaataa agaaaaacat ccaaaggcca actgcgactg tcagcagacc
     2581 cgtaatgatc ccgatgatgg ctgccaacca cgaggcgaca acgctcgcta ccaggaccag
     2641 caccgtaacc atcaacatca agatgtacca cacgacccaa accgcactca gcgagatgcc
     2701 gatccaaatc aacacgacca ccgacgcgcc gagtagtccc caaaaccgcg cccgcactgc
     2761 ggcgtaagtt gcacgagcag tgaccggttc gttgcgcagc agatgggcca ctaaagttcg
     2821 tgttgctccg cccatcacaa ccagcgtgaa caggtaacca cccatcatca cgcagaacga
     2881 gacaaaggcg agcacaccgt acatgaaaag atccgccata tcgggcgtga ggaacagtcg
     2941 ttgaaccgca agcgaacaca cgatccatcc cgcggccgct atgattaccg gaggcgcggc
     3001 ggtcctgatc agcacgaaga gatggcggcg atacaacctg acagcgcgat ctataaggtc
     3061 gccggccccg agcggcgcaa gaggaagttg atttggcgaa agtgctgtgg acatcgatca
     3121 gcgggtgcgt agaggttcaa cacatctttc gcgagcagta taacgagtca gtcgggcaaa
     3181 agcacaaaaa aaaggagcga cccttgcgag tcgctccccg gagctaaatc atcgtggtta
     3241 gattaccacg tgactttcag cgtgaagtgg ataac
//
LOCUS       DASWTX010000656         1539 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_380417, whole genome shotgun sequence.
ACCESSION   DASWTX010000656 DASWTX010000000
VERSION     DASWTX010000656.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1539
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_380417"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(16..393)
                     /locus_tag="VGD38_10025"
     CDS             complement(16..393)
                     /locus_tag="VGD38_10025"
                     /inference="COORDINATES: protein motif:HMM:NF013767.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009927 - histidine phosphotransfer kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HEY0728396.1"
                     /translation="MTLAHTETQTVDLAVLATYDDAQMEGDPDFVVELIDIYVDEVPR
                     LFDTLRKSIANKDRNTARRAAHSLRGSSANLGVLQMATIAGELEHLEDNYSTAAPELL
                     LSLENEFKRAKEILNAERQRRSS"
     gene            complement(393..797)
                     /locus_tag="VGD38_10030"
     CDS             complement(393..797)
                     /locus_tag="VGD38_10030"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0728397.1"
                     /translation="MPTDSRKEARRILIADDDPIIRHMVTRFVALEGYQPVVVNDGGA
                     AYRLLKNDSNFRGAIFDMMMPHLEGIEVMRFMRTEKRLMRIPVMMITSEPDLKLMANS
                     FAAGVTIFLPKPFTTDQFQNTFRLLLNHHMEN"
     gene            983..>1539
                     /locus_tag="VGD38_10035"
     CDS             983..>1539
                     /locus_tag="VGD38_10035"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEY0728398.1"
                     /translation="MTSTTVASGPRASRAGIILAFAAVYILWGSTYLGIRYAIETLPG
                     FLMAGTRFFIAGAILFTWAKLHGAPVGSLAQWRRAFVIGALLLLCGNGGVTWAEKYIA
                     SGLAALLVATEPLWVVLLNWTATRKRPNWRVFLGVLIGLIGVAMLVGGGGLSNGQEVS
                     ALSLAGAGVVLLAGLAWAGGSVYAA"
BASE COUNT          257 a          388 c          502 g          392 t
ORIGIN      
        1 cggcgatcag aattctcatg acgatcttcg ctgacgctct gcgttcaaga tttctttggc
       61 gcgcttaaat tcgttttcca aactcagcaa caactctggc gcggcggtgc tgtagttgtc
      121 ctcgagatgc tcgagttcac ccgcaatcgt cgccatttgc agcacgccca gatttgcgct
      181 gctgccgcgc aggctgtgtg cggcgcgtct ggccgtgttg cgatctttgt tggcgattga
      241 cttgcgaagc gtgtcgaaca gccgtggcac ttcgtcgaca tagatgtcga tcagttcgac
      301 tacaaaatcc gggtcgcctt ccatctgcgc gtcgtcgtaa gtcgccagca cggcgagatc
      361 gactgtttga gtttctgtgt gtgcgagtgt cattagttct ccatgtgatg gttgagcaac
      421 aggcggaacg tgttttgaaa ctgatccgtg gtgaacggct tcggcaggaa gatggtgaca
      481 ccggcggcaa agctgttcgc catcagtttc agatcgggtt ccgaggtgat catcatgacg
      541 gggatgcgca tgaggcgttt ttccgtgcgc atgaaacgca tcacttcgat gccttcgagg
      601 tgcggcatca tcatgtcgaa gattgcgccg cgaaagttgg aatcgttttt cagtagtcga
      661 tacgccgcgc ccccgtcgtt aacgaccacc ggctgatagc cttcgagcgc gacgaatcgc
      721 gtcaccatgt gacggatgat gggatcgtcg tcggcaatca gaattcgtcg cgcttcctta
      781 cgcgagtcag tgggcatgct tggcttctcc tcttgcgata gatactgggg cgattcaaac
      841 cggggtgcgt tatgacggca gggcataaca cctcaataac gtgcccggcg gcggtgattg
      901 cgcgccggta atgcggattg agcatgtgac gtgccaagac gccgcgttat gtgtaagctg
      961 tgcatttcgt ttctaactga atatgacaag cactactgtg gcttcaggcc cgcgtgcgtc
     1021 gcgggccggg atcattcttg cgtttgcggc ggtctacata ctttggggct cgacctatct
     1081 cggcattcgt tacgcgatcg agacgttgcc ggggttcctg atggccggca cgcgcttctt
     1141 cattgcgggc gcgattctgt ttacgtgggc gaagttgcac ggcgcgccgg ttggatcgct
     1201 cgcgcagtgg cggcgcgcgt ttgtgatcgg cgcgttgttg ttgctgtgtg gcaacggcgg
     1261 cgtgacgtgg gcggagaaat acatcgcgtc gggcctggcg gcgttgctgg tcgcgactga
     1321 gcctttgtgg gtggtcctgt tgaattggac cgcaacgcgc aaacgtccca actggcgtgt
     1381 cttcctcggc gttttgatcg gactcatcgg tgtggcgatg ctggttggtg gcggtggctt
     1441 gagtaatggg caagaggttt cggcgttgag tctggcaggt gcaggcgtgg tgcttttagc
     1501 ggggctcgcg tgggcaggtg gatcggttta tgcggcgta
//
LOCUS       DASWTX010000657         7123 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_31967, whole genome shotgun sequence.
ACCESSION   DASWTX010000657 DASWTX010000000
VERSION     DASWTX010000657.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7123
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31967"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2669)
                     /locus_tag="VGD38_10040"
     CDS             complement(<1..2669)
                     /locus_tag="VGD38_10040"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0728399.1"
                     /translation="MTTANPNRRVFWAGLLLILAAFTVSAQEFRGSLSGKIVDPNGAV
                     VPGSKVEIKNIETGIASSTVTGEDGSYAFALLPPGKYQLTVTKENFNTAVRDGVVVRV
                     ADRLTLDVQLEIGVTAMVTTVASGLTLDTGTVNTGTVVTGKQISELPLTEGTAYQLAT
                     LAPGIAYTGNPLFTGPTSNGNLAAFRSNGATGANQITLDGSPNYAFDGGVGFSPPSDA
                     VQEFKVQTNTFDAQQGYSAGATVNVAVKSGSNDFHGSAWYFNRDRSRTANNYFGNMSN
                     QARPIRTYHRYGGVVSGPVVLPGFKGTDRTFFLVSYERLKDNIAEPQIFTVPTEAMRR
                     GDFSALIVNRNNIANSANTVIFNPFSGVQQGNNVVRSSFGCPTSGAVPVNSQCNIIPS
                     NLINPVAAALVKFYPLPNITGVAAGTQNNFFSNQLRHQNYRAWLTRIDHRISNTQSIF
                     GKYYHSFNPEDRQDWAGEVNGFPITRGFEYRTNDGGNIDYTNAISSTFVFDIRVSLNR
                     FVQERRPAENFDPATLGFAAPSLAAMRGYQYIPRMMIRNLDATRPIRSTLGSTRSDWN
                     EGRIRPFYMGSIQPTITHVVDNHTLKYGYDFRVVRENFSTDAYKGGQFFFDGTFTAPA
                     SNSSSTLRNVFGRDLAAFMLGIPTTGSGGNASQIDNSINYSVQSLYHGMFFQDDWRVT
                     RKLTLNIGLRYDLEQGLTERFNRILRGFDFGTPSPIESQVRAAYTTSFNQNPANFVVA
                     PANFRVLGGYTFANEDNRNVWEADRSNFQPRLGLSYQLNDKTVVRAGFGIFMAPFQIE
                     TPQQIGFAGSTPVVPSNNNGLTFVATLTNPFPNGLSGVQPSFGSSLGLLTGLGADVAT
                     DTLPIIGLLRKNSKFARIVLGIQRELPGQIVVEA"
     gene            2978..3784
                     /locus_tag="VGD38_10045"
     CDS             2978..3784
                     /locus_tag="VGD38_10045"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEY0728400.1"
                     /translation="MDFRIISGQFSRAARLLGFVVFGLLLAAPVSAQQQAAAPATLKD
                     AKVDLKSSLSDLQTAYQNEVERLEKRHLQSKELYDDGLISRVEFEKGESELAAARAKV
                     ESVAKEIALANQPRPALIATPDAGFGVPSNIAWTTGNNRVDGLIRQYGTQYGVDPYLI
                     YCLMSQESSFISTAVSHKGAQGLMQLMPGTAARYGVTNPYDVAQNIKGGTRYLKDLLQ
                     MFNGRVDLALAGYNAGEGAVMTYGNKIPPYDETRNYVRLILKRYTKKPVS"
     gene            complement(3786..4727)
                     /locus_tag="VGD38_10050"
     CDS             complement(3786..4727)
                     /locus_tag="VGD38_10050"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY0728401.1"
                     /translation="MAPNRRQFISAAAGFAAYSSLFGRAAFGQQKKPTRVILLGTKGG
                     PSVGKAGRSNPATLVLINDVPYLVDCGYGASRQLVSAGVALNRLRYIFISHHHSDHNL
                     EFGPLLYNAWITGNPARVDAYGPPGLTAMSRDYFNYLKFDIDTRIVDEGRPDPRKQLT
                     VHEFSKPRTVLVNDDVKVSSCLVRHPPIAHAYAYRFDAHDRSVVISGDTAYAPELIEF
                     AKGADVLVHEVMYLPGVEALVKRLPNAQRLREHLLASHTLPEDVGKIAAQAGVKTLVL
                     SHFVPGDDPSITDEQWSEGARKHFNGRIVVGKDLLEI"
     gene            complement(4778..5011)
                     /locus_tag="VGD38_10055"
     CDS             complement(4778..5011)
                     /locus_tag="VGD38_10055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728402.1"
                     /translation="MSAVGFAPLPPQDSELERLRETCKRLNFAIRAIKEAQECLTKMN
                     IGEARKCLNNATWQAREAKKTLAEVGRAKKTHR"
     gene            5061..6104
                     /locus_tag="VGD38_10060"
     CDS             5061..6104
                     /locus_tag="VGD38_10060"
                     /inference="COORDINATES: protein motif:HMM:NF012931.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 20 glycosylhydrolase"
                     /protein_id="HEY0728403.1"
                     /translation="MLVAGMKLTRCFYTLVFLIICAAGVAAKTKQPWRAVHLLDYNTD
                     AQLDALGANLETLAKQGINVIILEVDYNFAFKSHPELRRGKDPITREGARRFAARCRK
                     LNIRLIPEFQSVGHQSWKAETFPLLTVYPQFDLTPGAFPNNEGIYCREWDVTNPEVWR
                     IVFALMDEIIDAFRADAMHVGMDEVFLLGSEKSPSTKGKDPAQLFAKAVNELHTHLVR
                     KRKVEMLMWGDRLIDGKKYDLGEWEAAVNGTAGAIDLIPKDIIICPWHYEPRESYLSI
                     PMFIDKGFRVLPAGWKNLDATKALIQYSRRHAGPKMLGYLFTTWGVNKDALVGFPPLI
                     EGLKLLRDNQRPS"
     gene            6114..>7123
                     /locus_tag="VGD38_10065"
     CDS             6114..>7123
                     /locus_tag="VGD38_10065"
                     /inference="COORDINATES: protein motif:HMM:NF012618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728404.1"
                     /translation="MTLTFARIAIAALLVVLSCSSARAQLQALIGEGDLKFAAKHRVN
                     AHGDEFNSLTMSPDGQRLFTGTEKGDIIVWNVTTNRLERTLHQPSGIHFVAALQDARE
                     LIAASSNHIKPANSLVRRWNVETQTFVDLTGVDTDSFLTGLAIDTEAGLIAATSENGT
                     VVVWDSSTNKQLARWKLDGLPSAVALLGRNVYVATIGRNPPHGPPTGSAIVKLNIDNQ
                     NQPPANVLRVERGFWSTLEPSPDRRLLSVTFHEDYADGKTVVINPVSKRTVRTFGAAA
                     SLWLGGSQLMLFEWLDPAEVVQLSANGRAKSVRKFERFEADTPGRAFDLSGQVVNAGA
                     SKV"
BASE COUNT         1515 a         1976 c         2112 g         1520 t
ORIGIN      
        1 gcctcgacga cgatctggcc cggcagctcg cgttggatac ccagcacgat acgagcgaat
       61 ttcgagttct tgcgcaacag gccgatgatc ggcagcgtgt cggtcgcgac atccgcgccg
      121 agtcccgtca atagaccaag actcgaaccg aacgaaggtt gcacgccact caagccgttc
      181 gggaacggat tggtcagcgt cgcgacaaac gtcagaccat tgttgtttga tggaacgacc
      241 ggcgtgctgc ccgcgaagcc aatctgttgc ggcgtttcga tctggaacgg cgccatgaag
      301 ataccgaagc cggcgcgcac cacagtcttg tcattcaact gatacgacag accgagacgt
      361 ggttggaagt tactgcgatc cgcttcccaa acgtttcgat tgtcttcgtt cgcgaaggtg
      421 taaccaccaa gcacgcggaa gttcgccggc gcgacgacga agttcgcagg gttctgattg
      481 aacgacgtcg tgtaagccgc gcgcacctga gactcgatcg gactcggcgt gccgaaatcg
      541 aagccgcgca ggatgcggtt gaaacgttcg gtcaaaccct gctcgagatc gtaacgaaga
      601 ccgatattca acgtcagctt gcgcgtcact cgccaatcgt cctgaaagaa catgccgtga
      661 taaagcgatt ggaccgagta gttgatcgag ttatcgatct ggctcgcgtt accgcccgaa
      721 cccgtcgtcg gaatgccgag catgaatgcg gcgaggtcgc gtccgaacac gttccgtagc
      781 gtgctcgacg agttcgaagc aggcgccgtg aacgtgccgt cgaagaagaa ctgtccgcct
      841 ttgtaagcgt cggtgctgaa gttttcacgc accacgcgga agtcgtagcc gtacttaagc
      901 gtgtggttgt cgacgacgtg cgtgatcgtc ggctggatcg agcccatata aaaaggacgg
      961 atgcgccctt cgttccaatc cgatcgcgtg gagccgagcg tggaacggat tggccgggtc
     1021 gcgtcgaggt ttctgatcat catgcgcggg atgtactgat aaccgcgcat cgcggcgagc
     1081 gaaggagccg caaaaccgag cgtcgcggga tcgaagtttt ccgccgggcg gcgttcctgc
     1141 acgaagcgat tcaagctgac gcgaatatcg aaaacgaaag tcgagctgat cgcgttggtg
     1201 tagtcgatgt tgccgccgtc gttagtgcga tattcgaaac cgcgtgtgat cggaaaaccg
     1261 ttaacctcac cggcccagtc ctggcgatcc tccgggttga agctgtgata gtacttgccg
     1321 aagatcgact gggtgttgct gatgcggtga tcgatgcgcg tgagccacgc gcgatagttc
     1381 tggtgacgaa gctggttgga gaagaagttg ttctgcgttc ccgcggcgac gcccgtgatg
     1441 ttcggcagcg gatagaactt gacgagggcg gcggccactg gattgatcag gttcgacgga
     1501 atgatgttgc attgggagtt gaccggcacc gcgcctgaag tcggacagcc gaaggaggag
     1561 cgcacgacgt tgttgccctg ctgcacgcct gagaacggat taaagatcac ggtgttcgct
     1621 gaattcgcga tgttgtttct gtttacgatc aacgccgaga agtcgccgcg ccgcattgct
     1681 tcggtcggca ctgtgaagat ctgcggctcg gcgatgttgt ctttgagacg ctcgtaagag
     1741 acgaggaaga acgtgcgatc ggttcctttg aaaccgggca gcacgactgg tccactaacg
     1801 acaccgccgt aacgatgata ggtgcgaatc ggacgcgcct gattgctcat gttgccgaag
     1861 tagttgttgg cggtgcggct gcgatcgcga ttgaagtacc aggccgagcc gtggaagtcg
     1921 ttgctaccgc tcttcaccgc gacgtttact gtcgcgcctg ccgagtaacc ctgctgcgcg
     1981 tcaaacgtgt tggtttgtac tttgaactcc tgcacggcat cggatggagg tgaaaacccg
     2041 acgccgccgt cgaaggcgta gttaggcgaa ccgtcaagcg tgatctggtt cgcgcccgtt
     2101 gcgccgtttg agcgaaacgc cgcgaggttg ccgttcgacg ttggaccagt aaaaagggga
     2161 ttgcctgtgt acgcaatccc cggagcgagt gtggctaact gataagcggt gccttcagtc
     2221 agcggcagtt cgctaatctg tttgccggtg actacggtgc cggtgttgac ggtgcctgtg
     2281 tcgagcgtca atccggaagc gacggtggtc accatcgcgg tcacaccaat ttccaactgg
     2341 acgtcgagcg tcaggcgatc ggccacgcgc accacgacgc catcgcgaac ggcggtgttg
     2401 aagttttcct tcgtcaccgt gagctggtat ttgccgggtg gcagcagcgc gaaggcgtaa
     2461 ctgccatcct cgccggtgac ggtgctggac gcgatgccgg tctcgatgtt tttgatttcc
     2521 actttgctgc cggggacgac ggcgccgttc ggatccacga ttttaccgga gagcgatcct
     2581 ctaaactcct gagccgacac ggtgaaagcg gcaaggatca ggagcagacc agcccaaaac
     2641 actcgtcggt tggggttcgc tgtagtcatg actttattct cctcgtagcg acggcggaaa
     2701 aggcgacgcg tcggctcggc taagtcgatt ggtatgacca agagctatgt gcgactgttt
     2761 attgctttgc tgattgttta agcaggcggc gtattttgcc tcagtaggat tttcgctgtc
     2821 aagaataatt tattaccaat cgtggtaaat cttatacggc ggtaagacca atttttgaaa
     2881 tggaacaaag cgggacggcg caacgtttcg ggaatctcgg ccatcgtaac cggtcgtgtg
     2941 tttcgcgtgt ctaataatgg tggaggaaat taggcgtttg gatttcagaa ttatttcagg
     3001 acagttttcg agagccgcgc gtttgctcgg ctttgttgtg tttggcctct tattggcggc
     3061 cccggtgagc gctcagcagc aggcagccgc gcccgccact ctgaaagatg caaaagttga
     3121 cctgaagtcg agtctcagcg atctgcaaac cgcctaccag aatgaagttg aacggctcga
     3181 gaaacgccac ctgcaatcca aagagctcta cgacgacggg ctgatctcac gcgtcgagtt
     3241 tgaaaagggc gagtcagaat tggccgctgc ccgcgcgaag gttgaatcag tcgcgaaaga
     3301 gatcgcgctc gcgaatcagc cgcggccggc gttgattgcc actcccgacg cgggttttgg
     3361 tgttccgtcg aatatcgcct ggacgaccgg aaacaaccga gtcgacggtc tcatccgtca
     3421 atacggcacg cagtatggtg tcgatcctta ccttatttat tgcctgatgt cgcaggagtc
     3481 gagcttcatc tcgaccgcgg tcagccataa aggcgcgcag ggattgatgc agctcatgcc
     3541 cggcaccgcg gcgcgttatg gcgtgacgaa tccttacgac gtggcgcaga acatcaaagg
     3601 cggcactcgt tacctgaaag acctgctcca gatgttcaac ggccgtgtcg atctcgcgct
     3661 cgccggatac aacgccggcg agggcgcggt gatgacgtat ggcaacaaga ttccgcccta
     3721 cgacgagacg cgcaactacg tgcgcctgat cctcaagcgc tacaccaaga agccggtttc
     3781 ctaaatcaga tttccagtaa gtcttttccg acgacaatgc gtccgttgaa gtgcttgcgc
     3841 gcgccttcgg accattgttc gtctgtgatt gacggatcgt cgccgggaac gaagtgcgac
     3901 agcacgagtg tcttgacgcc ggcttgggcc gcgatctttc cgacgtcttc cggaagggtg
     3961 tgagaggcga ggagatgttc gcgtaatcgt tgcgcgtttg gcagacgttt gacgagtgct
     4021 tcgacaccgg gcagatacat cacctcgtgc accagcacat cagcgccttt cgcaaattca
     4081 atcagctccg gcgcgtaagc cgtgtcgccg gaaatgacga ccgaacgatc gtgcgcgtca
     4141 aagcggtaag cataagcgtg cgcgatcggc gggtggcgca ccaggcacga gctgactttc
     4201 acgtcgtcgt tgactaagac cgttcttggt ttactgaact cgtgaaccgt gagctgcttg
     4261 cgcggatcgg gacggccttc gtccacgatg cgcgtgtcga tatcgaattt caggtagttg
     4321 aaatagtcgc gcgacatcgc cgtcagtccc ggtggaccat aggcatcaac acgcgccgga
     4381 ttgccggtga tccaagcgtt gtataacagt gggccaaact ccaggttgtg atcggagtgg
     4441 tgatgactga tgaagatata acgcaaccgg ttgagcgcga cgcctgcgct caccaactgc
     4501 ctcgaagcgc catacccgca atcaaccaga tacggaacat cattgatcag cacgagcgtc
     4561 gctgggttac tacgcccggc cttgccgaca ctcggcccac ccttcgtacc cagcaggatc
     4621 acgcgcgtgg gcttcttttg ttgaccgaaa gcggcgcgcc cgaagaggga actgtaagcg
     4681 gcaaaaccag ccgcagcgct aatgaattgt cgacgattag gggccatggt taggcgaatg
     4741 tatatcttga cactcgcact gctggcaaca gaatttgtta acggtgggtt ttcttcgcgc
     4801 ggccgacttc ggctaaggtc tttttggctt cgcgcgcttg ccaggtggcg ttgttgagac
     4861 acttgcgcgc ctcgccgatg ttcattttgg tgagacactc ctgggcttct ttgatcgccc
     4921 gaatggcaaa gttcagccgc ttacacgttt cccgcagcct ctcaagctcc gagtcctgtg
     4981 gcggcagagg tgcgaacccg acggcgctca tcaaggcaac ttagccccac gattttcgct
     5041 tggcaaccgt ttcttgagtt atgctcgtag ccggaatgaa gctgacccgc tgcttttaca
     5101 ccctcgtctt cttaataatc tgcgccgccg gcgtcgccgc gaaaacgaaa cagccgtggc
     5161 gcgccgtgca cctgctcgac tacaacaccg acgcgcagct cgacgcgctc ggcgccaatc
     5221 tcgagacgct cgcgaagcag ggaatcaacg tcatcattct cgaggtcgat tacaacttcg
     5281 cgttcaagtc gcatccggag ctgcgtcgcg gaaaagaccc gatcacgcgc gagggcgcgc
     5341 ggagatttgc ggcgcggtgc aggaagctga acatccgtct gattcccgag tttcaatccg
     5401 tcggtcacca gtcgtggaag gcggagacgt ttccactgct cacggtttat ccgcagttcg
     5461 atctcacgcc cggagcgttc ccgaacaacg agggcatcta ctgccgcgag tgggacgtga
     5521 ccaacccgga agtgtggcgc atcgtgtttg cgctgatgga cgagatcatc gacgcgtttc
     5581 gcgcggacgc aatgcacgtc ggcatggacg aggtctttct gctcggctcg gagaagtcgc
     5641 cgtcgacgaa aggcaaagat cccgcgcaac tgtttgcaaa agccgtcaac gagctgcaca
     5701 cgcatcttgt gcgcaaacgc aaggtcgaga tgttgatgtg gggcgatcgg ctgatcgacg
     5761 gtaagaagta tgatctcggc gaatgggaag ctgccgtgaa cggaaccgcc ggcgcgatcg
     5821 acctgatccc gaaagacatc atcatctgtc cgtggcatta cgaaccgcgc gagagttacc
     5881 tctcgatccc gatgtttatc gacaaaggtt ttcgcgtgtt gcccgccggc tggaaaaacc
     5941 tcgacgccac gaaggcgttg attcaatata gccgccggca tgctggtccg aaaatgctcg
     6001 gttacctgtt cactacctgg ggcgtaaaca aggatgcact cgtcgggttt ccgccgctga
     6061 tcgaaggctt gaaactcctg cgcgacaacc aacgtccgtc ataacagcaa cgtatgacac
     6121 taaccttcgc acgaatcgcg atcgccgcct tgctcgtcgt gctgagctgt tcctccgcac
     6181 gcgctcaact ccaggcatta atcggagaag gagacctcaa gtttgcagcc aaacatcgcg
     6241 tcaatgcgca tggcgacgag ttcaactcac tgaccatgag ccccgatggc cagcgactct
     6301 tcaccggcac ggaaaagggc gacatcatcg tttggaacgt cacgaccaat cgccttgaac
     6361 gaacgcttca tcaaccgagc gggattcact tcgtcgctgc tctgcaggat gcgcgcgagt
     6421 tgatcgctgc gagttcaaat cacatcaagc cggcgaacag tcttgtgcgg cgatggaacg
     6481 ttgagactca aacgtttgtc gacctgaccg gcgtcgacac tgattctttt ctgaccgggc
     6541 tggccatcga tactgaagcg ggattgattg ccgccacttc cgaaaacggg accgttgtcg
     6601 tctgggattc gtcgaccaac aaacaactgg cgcggtggaa gctcgatggt ctgccgagcg
     6661 ctgttgcctt gctcggccgg aacgtctatg tcgccaccat cggccggaac cctccgcacg
     6721 gtccaccaac cggaagcgcg atcgtcaaac tcaacatcga caatcaaaac caaccgcccg
     6781 caaatgtcct gcgggttgaa cgtggatttt ggagcacact cgaaccgtcg ccagatcgac
     6841 gtttgctgag cgtcacgttt cacgaagatt acgctgacgg aaaaacggtt gtaatcaatc
     6901 ctgtttcaaa acggacagtc cgaactttcg gagcagcagc ttcgctctgg cttggtggtt
     6961 cgcaactgat gcttttcgaa tggttggatc cggcggaggt cgttcaactt tccgccaacg
     7021 gacgcgcgaa gagcgttcgt aagttcgaac gcttcgaagc tgatacaccc ggcagggcct
     7081 tcgatctcag cgggcaggtt gttaatgccg gcgcttcgaa agt
//
LOCUS       DASWTX010000658         2486 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_96391, whole genome shotgun sequence.
ACCESSION   DASWTX010000658 DASWTX010000000
VERSION     DASWTX010000658.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2486
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96391"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..725
                     /locus_tag="VGD38_10070"
     CDS             <1..725
                     /locus_tag="VGD38_10070"
                     /inference="COORDINATES: protein motif:HMM:NF017555.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DALR anticodon-binding domain-containing
                     protein"
                     /protein_id="HEY0728405.1"
                     /translation="PPACEELGIELSEEDRARPYIEMSGRKGLGVKADDLIDQLESGA
                     LAEVRKRNPELSEEGLKATAHEVAVSALRYFLLKFTRNTVIAFDFKEALSFEGETGPY
                     CQYAAVRAGSIFRKLDAETLDQAKSLLADAGSSDELHPRISEILSGEIGTEIWSLLML
                     TQQLDEVIAQCRKSAEPANLAKYTFSVARGFSRFYQRDENRIVTEKDDVRRAVLIAVT
                     QIVRAQLTAALSILGIRVPEQM"
     gene            complement(728..1624)
                     /locus_tag="VGD38_10075"
     CDS             complement(728..1624)
                     /locus_tag="VGD38_10075"
                     /inference="COORDINATES: protein motif:HMM:NF017536.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HEY0728406.1"
                     /translation="MEATKLKKETRSVAGVVNSIETLEGGGFLVRRPFPQASFSEFDP
                     FLLLDEMGPMDVAPGEAKGAPDHPHRGFETVTYLLSGEMEHKDSRGHAGRLTPGDVQW
                     MTAGAGVVHSEMPSSEFQRQGGRMHGFQLWVNLPQREKMTKPRYQEIPRAQIPQVTSE
                     DGLVTVRVIAGEAMGQHAVIETHTPIIYLHYSVEPGGVVTQPVPAEYNAFAYLVDGAG
                     LFGGASERADDGQLVMFAQDGEEIRIENPADAQTRLEVLVIAGVPLNEPIARYGPFVM
                     NTEREIRQAFEDYVRGRMGAIE"
     gene            complement(1647..2126)
                     /locus_tag="VGD38_10080"
     CDS             complement(1647..2126)
                     /locus_tag="VGD38_10080"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEY0728407.1"
                     /translation="MSTNNLESLTGGSGVHVFLVLWKALHAVEAYAVKSIADMEIGAT
                     DFAVLEALLHKGPLPVNEIGRKVLLTSGSITTAVDRLESKGLVERRAHGSDRRARIVH
                     LTKQGRALITRAYAQHAADLERLAAATLTKAERATLIRLLKKIGYEAAASTKRDDAA"
     gene            2245..>2486
                     /locus_tag="VGD38_10085"
     CDS             2245..>2486
                     /locus_tag="VGD38_10085"
                     /inference="COORDINATES: protein motif:HMM:NF037053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728408.1"
                     /translation="MLIVMKTDATDSQVEAVLRVIEQLGFKGHPMPGATRTAIGITGN
                     QGAVDPSHFENLAGVAEAIRVSKPYKLITLDLRPEKT"
BASE COUNT          487 a          809 c          687 g          503 t
ORIGIN      
        1 cgccccccgc gtgtgaagag ctcggcatcg agttgagcga agaagaccgc gcgcggccgt
       61 acatcgagat gagcggacgc aaaggtctcg gcgtgaaggc cgacgacctg atcgatcaac
      121 tcgaatccgg cgcgcttgcc gaagttcgaa agcgcaatcc ggagctgtcg gaggaaggct
      181 tgaaagccac ggctcatgaa gtcgcggtgt cggcgttgcg ttacttcctg ctgaagttca
      241 cgcgcaacac cgtcatcgct ttcgacttca aagaagcgct ctcgttcgaa ggcgaaaccg
      301 gtccgtattg ccagtatgcg gcggtccgcg ccggttcgat cttccgcaaa ctcgacgctg
      361 agaccttgga ccaggcgaag tcgctgttgg cggatgccgg ttcgagcgac gagttacacc
      421 cgcgaatttc agagatcttg tcaggcgaga tcggcaccga gatctggtcg ctgctcatgc
      481 tgacgcagca gttggacgaa gtgatcgcgc agtgtcgcaa atcagcggag ccggcgaacc
      541 ttgcgaagta caccttctcc gtcgccagag gcttcagccg gttttatcag cgcgacgaaa
      601 accgcatcgt caccgagaaa gacgacgttc gccgcgctgt tttgatcgcc gttacgcaga
      661 ttgtgcgcgc tcaactgacc gccgcgcttt caatcctcgg catccgcgtc ccggaacaga
      721 tgtaacccta ttcgatcgcg cccatgcgtc cgcggacgta gtcttcaaac gcctggcgta
      781 tctcgcgttc ggtgttcatc acaaatgggc catagcgtgc aatcggctca ttcaacggaa
      841 cgcccgcgat caccaacacc tccaatcgcg tttgcgcgtc cgccggattc tcgatgcgaa
      901 tctcctctcc gtcctgagca aacatcacca actgtccatc atcagcgcgc tcgctcgcgc
      961 cgccaaacag tcccgcgccg tctacgagat aagcgaatgc gttgtactca gcgggcacgg
     1021 gctgcgtcac cacaccgccg ggctcgacgc tgtagtgcag gtagatgatg ggcgtgtgcg
     1081 tctcaatcac ggcgtgttgg cccatcgctt cacccgcgat cacgcgcacc gtcacgagcc
     1141 cgtcttccga cgtgacctgt gggatctgcg cgcgcggaat ctcctggtaa cgcggcttcg
     1201 tcatcttctc gcgctgcggc aggttcaccc acaactgaaa gccgtgcatg cgtccgccct
     1261 gacgttgaaa ctcgctactc ggcatttccg agtgcaccac gccggcgccc gccgtcatcc
     1321 attgcacgtc gcccggcgtc aaacggcccg catgcccgcg tgaatccttg tgctccatct
     1381 cacccgacaa caggtacgtc acggtctcga atccgcggtg cggatgatcc ggcgcgccct
     1441 tcgcctcacc gggcgcaacg tccatcggcc ccatttcgtc cagcaacaga aacggatcga
     1501 actccgaaaa cgatgcttgc ggaaacggcc ggcgcaccag aaaaccgccg ccttccagcg
     1561 tctcgatact gttcacaact ccagccacac tgcgcgtttc tttcttcaac ttcgtcgctt
     1621 ccattttcac tccttgtaaa ctgccctcac gcggcatcgt cgcgtttcgt cgacgccgct
     1681 gcttcgtaac caatcttttt caacaaccgg atcagcgtcg cgcgctcggc ttttgtcagc
     1741 gtcgccgcgg ccagacgctc gaggtcggct gcgtgctgcg cgtaagcgcg cgtgatcagc
     1801 gcccttccct gcttcgtcag gtgtacgatt cgcgcgcgcc gatcgctgcc gtgcgcgcgc
     1861 cgttcgacca gtcctttgct ctcgagccgg tcgacggcgg tcgtgatcga gccgctcgtc
     1921 aacaagacct tgcggccgat ttcgttaacc ggaagcgggc ctttgtggag gagggcttcc
     1981 agcacggcga agtcggttgc accgatctcc atgtccgcga tgctcttcac cgcgtacgcc
     2041 tcaaccgcgt gcagcgcctt ccacagcacg agaaagacgt gcacgccgct gccaccggtc
     2101 aaggactcaa ggttgttcgt agacatttat cttgacttca agatactttg agtcgagagg
     2161 tttgtcaagc ggggattagg caaaccaaag caggatcttt ttgaacgctg tactttttta
     2221 cgcagctaag gtaataaaag cagcatgtta atcgtgatga aaaccgacgc caccgacagc
     2281 caggtcgagg ctgtcctgcg cgttatcgaa cagttggggt tcaagggtca cccgatgccg
     2341 ggcgccacac gcaccgccat cggcatcacc ggcaaccagg gcgcggtcga tccgtcccac
     2401 ttcgaaaacc tcgcgggcgt cgctgaagct attcgcgtca gtaaacccta taaactgatc
     2461 acgctcgatc tgcgtccgga aaagac
//
LOCUS       DASWTX010000659         4477 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_117903, whole genome shotgun sequence.
ACCESSION   DASWTX010000659 DASWTX010000000
VERSION     DASWTX010000659.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4477)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4477)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4477
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117903"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1750
                     /locus_tag="VGD38_10090"
     CDS             <1..1750
                     /locus_tag="VGD38_10090"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728409.1"
                     /translation="VRYAVVYHRPKPIAEARGEDSPLIQRIQQILDKSLAKEPGDRYQ
                     RIEDMRSDFQEVLRELEGDSSFGNTLTDATQSIPPSALRRKAPGFWTTSRVIVAVVAA
                     AVLITALSVIALRGSRRQGDTSVAINSLAVLPFSNSDPSMEYLSDGITESLIESLSQL
                     PDLKVKSSSTVFHYKNRGAEPAKLGRELGVHALLSGNIVQRGDELAVSVELIDVRDDS
                     HIWGERYSRKVSEVVALPQQISRDVSQKLRARADGSHHPQITRNFSPDSEAYRLYLLG
                     RYNWNMRTVEGLRNGIEYFGKAIQRDQDYGLAYAGLADCYLLLNVYNVTSANDSYPKA
                     EAAANRALSINSNLAEAHTSLGFVSYRYHLKWSEAEQHFKKAISLNPSYATAHQWYAS
                     YLAASGRLGEAVVEARMAHELEPFSLTIYSDYVRGLYYAGQLDQAHSEALKLREMDPN
                     FARAYYELGLVLEAQGKLDEAISAFRNALKISPDNITALTALGHAQALAGKKNEAERV
                     IARLQELSKQQYVSPFQAAVVYAGLDNREMALDGLEKSREERFNWLPFVRVDPVFQNL
                     RSEERFIELARTLGLN"
     gene            1750..3444
                     /locus_tag="VGD38_10095"
     CDS             1750..3444
                     /locus_tag="VGD38_10095"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEY0728410.1"
                     /translation="MTHSLSRRQFVLSTAMVSVAAFINPRNLLGQSAAVQPLFARLDE
                     FIARHMRETGAPGMTLALANRDGLIRASTYGFADTKAKSRVVPETMFEIGSVSKSFVG
                     LALLQLRDEGKLDLNKPVVEYLPWLKINSKFEAITTHHLLSHTAGLPSAPLLLDALLH
                     ELPVAYAPGKRFLYCNTGYNILGFLIEALDKRPFPDAMRARMLTPLGMTASAPVISND
                     IRAQMAVGYEPLNEGRPFPNNGPLAEAQWIEVDVAAGSIASTPADMAKYIRMLVNRGA
                     LPKGRLLSEEAFALFTKPAIDSPYRGEPASYSYGVWVSNVDAHTRLRHTGGMVAFSSS
                     LDVDLTDGVGAFASVNANLRGYRPVAVTKYAIELFNASLANKPLPEAPPPAPAPDEVN
                     NASEYAGVYTSPDGKKLEFTAEGSKLVLTDNGRKIVLERMAGDRFIVKHPAFDLYVLG
                     FVRENRLVTQVFHGPDWYMGERYTGPRTFEARKDWEGFVGHYYNDSPWYGDTRIVLRK
                     GQLYVDGVQPLIPRADGKFGLGDPEGADWMSFESLVNGRAMVLNFSGIPFRRMFTP"
     gene            complement(4115..>4477)
                     /locus_tag="VGD38_10100"
     CDS             complement(4115..>4477)
                     /locus_tag="VGD38_10100"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY0728411.1"
                     /translation="KIAWKLGRAIPRTPSPLLVGDELYIVNDNGVATCIDAKTGEELW
                     RARLDGAYSASPVYADGRIYFLSEDGISVVIAPGRQLKHLATNQLDASTLASMAISHS
                     SLFIRSATHLYRISNAPR"
BASE COUNT          858 a         1247 c         1440 g          932 t
ORIGIN      
        1 cgtgcgttac gccgtcgtct atcaccggcc aaagccgatt gcggaggcgc gcggtgaaga
       61 ttcgccgctg atccaacgca ttcaacagat actcgataag tcactcgcga aagaacccgg
      121 agatcgttat caacgcatcg aagacatgcg cagcgatttt caggaagtgt tgcgcgagct
      181 cgagggtgat tcgagtttcg gcaacacatt gactgacgcg acgcagtcga ttccaccttc
      241 cgctttgcgc cgcaaggcgc cgggcttctg gaccacatcg cgcgtcatcg tcgcggtcgt
      301 ggctgcggcg gttttgatta ctgcgctgtc ggtgattgct ctgcgcggtt cgcggcgtca
      361 gggggataca agcgtggcga tcaattcact cgcggtgttg ccgttttcga acagcgatcc
      421 gagcatggaa tatctttcag acggcatcac cgagagtttg atcgagagtc tctcgcagtt
      481 accggatctc aaagttaaat cgagcagcac ggtctttcat tacaagaatc gcggcgccga
      541 accggctaag ctcggacgcg agctcggcgt tcacgcactg ctttccggca acatcgtgca
      601 gcgcggtgat gagctcgcgg tcagcgtcga gctgatcgac gtgcgcgacg atagtcacat
      661 ttggggtgaa cgttacagcc gcaaggtttc ggaagtcgtc gcactgccgc aacagatctc
      721 gcgcgacgtg tcgcaaaagc tgcgcgctcg cgccgacggc agtcaccatc cgcagatcac
      781 gcgcaacttc tcgcccgatt ctgaagcgta tcggctctat ctcctcggcc gttacaactg
      841 gaacatgaga accgtcgaag gactgcgaaa cggcatcgag tatttcggca aggcgatcca
      901 gcgcgatcag gattacgggc tcgcgtacgc cggactcgcc gattgttacc tgctgctgaa
      961 tgtttacaac gtcacttcgg cgaacgattc gtatcccaaa gccgaagccg cggctaaccg
     1021 cgctttgtcg atcaactcga accttgccga agcgcacacg tcgctgggtt tcgtgagtta
     1081 tcgttatcat ctcaagtgga gtgaggccga gcagcacttc aagaaagcga tttcactcaa
     1141 tccgagttat gctacggcgc atcagtggta cgcgagttac ctggcggcat ccggacggct
     1201 cggcgaagct gttgtcgaag cgcggatggc gcacgagctc gaaccgtttt cgctgacgat
     1261 ctacagcgat tacgttcgcg ggttgtatta cgccgggcag ttggaccagg cgcacagcga
     1321 agcgttgaag ctgcgcgaga tggatccgaa ctttgcgcgc gcgtattacg agttgggatt
     1381 ggtccttgaa gcgcaaggaa agttggatga ggctattagc gcgtttcgta atgcgctgaa
     1441 gatctcgccg gataacatca ccgcgctcac ggcgctcggt cacgcgcagg cgttggcagg
     1501 aaagaagaac gaggccgaac gcgtcatcgc gcgtttgcag gagctttcaa aacaacagta
     1561 cgtctcgccg tttcaggcgg cggtggtcta cgccggtctc gacaatcggg aaatggctct
     1621 cgatgggctc gaaaagtcgc gtgaagaacg tttcaactgg ttgccgttcg tgcgtgtcga
     1681 tccggttttt cagaatttgc gatctgagga aaggtttata gagctggcaa gaactcttgg
     1741 gctaaattga tgacacacag tctttcacga cggcagttcg tcctgagcac cgcgatggta
     1801 agcgtcgcgg cttttattaa cccccgcaat ctgttgggcc aatcggcggc ggtgcagccg
     1861 ctgtttgcgc ggcttgatga attcatcgcg cgccacatgc gtgaaacggg tgcgccggga
     1921 atgacactag cgctcgcgaa tcgcgacggt ttgattcgcg catcgactta cggctttgcc
     1981 gatacgaaag cgaagtcgcg cgtcgtgccc gagacgatgt ttgagatcgg atcggtgtcg
     2041 aagtcgtttg tcgggcttgc gcttttgcaa ttgcgcgatg aaggaaaact cgatttgaac
     2101 aagccggtcg ttgagtacct gccgtggttg aagatcaatt cgaagtttga agcgatcacg
     2161 acgcatcact tgctcagtca taccgcggga ttgccgtcgg cgccgttgtt gctcgatgcg
     2221 ttgttgcacg aactgccggt cgcgtatgcg ccgggcaaac gttttctcta ctgcaacacc
     2281 ggctacaaca ttctcgggtt tctgattgaa gcgctcgaca agcgtccgtt tcccgacgcg
     2341 atgcgcgcgc gaatgctcac gccgctcggt atgaccgcga gcgcgcccgt tatcagcaac
     2401 gatattcgcg cgcagatggc ggtcggttac gagccgctca atgaagggcg cccgtttccg
     2461 aataatggcc cactcgcgga agcgcagtgg atcgaagttg acgtcgcggc gggaagcatt
     2521 gcttcaacac cggctgacat ggcgaagtac atacgcatgc tcgtcaatcg cggcgcgttg
     2581 ccgaagggga ggctgctgtc ggaagaagcg ttcgcgctgt ttacgaaacc ggcgatcgac
     2641 tcgccgtatc gtggcgagcc ggcgtcgtat agttacggtg tgtgggtgag caacgttgat
     2701 gcgcacacgc gtttgcgtca cacgggcggc atggtggcgt tcagttcgtc gttggacgtg
     2761 gatttgacgg atggtgttgg tgcgtttgct tcggtgaatg cgaacctgcg cgggtatcgt
     2821 ccggtggctg tgacgaagta tgcgatcgag ctgttcaatg cttcgctggc gaacaagccg
     2881 ttgcctgaag cgccgccgcc cgcgccggcg ccggatgaag tgaataacgc gtcggagtat
     2941 gccggtgttt acacttcgcc tgatggcaag aagcttgagt tcaccgccga aggcagcaag
     3001 ctcgtgctca ctgataacgg gcgcaagatc gtgttggagc gcatggccgg tgatcggttt
     3061 atcgtgaagc acccggcgtt tgatctgtac gtgctcgggt tcgtgcgtga gaaccggttg
     3121 gtgacgcaag tctttcacgg tcctgactgg tacatgggcg agcgctacac cggcccgcgc
     3181 accttcgagg cgcgcaagga ttgggaagga ttcgtgggcc actactacaa cgacagtccg
     3241 tggtacggcg acacgcgcat cgtcttgcgc aaaggccagc tttatgtaga cggcgtccag
     3301 cccctcatcc cgcgtgctga cggaaagttc ggcctcggcg atccggaagg ggcggactgg
     3361 atgagtttcg aatccctcgt caacggccgc gccatggtcc tgaacttctc cggcatcccc
     3421 ttccgccgga tgttcacgcc gtagttgcgg gtcgcgctac agagtttcgg acgctttgcg
     3481 acgggctgcc gcccagctct gcgccgggtt cgccgccgga tgtgaggcac ggctctgcta
     3541 ccgcctcgac tccggttctt ccagcacctc ggccccggct ttgccgccgg atgtgacgcg
     3601 agcctacgct acggcgaggc tacgcctctg tgtcgctacg gctctgccag cgcttgggcc
     3661 gcggcttcgc cgccggatgt gaggcgaggc tccgcctcgc cggaggactc agcaataaga
     3721 aaaatggggg ctacgcccct ggtacggcct ctggcccaaa ggttttgggg catagcccga
     3781 accaggggcc cagcccaacg gttttttacg ggctccttac ggcaaggcgt agccttgcct
     3841 cacatccggc ggcggagccg cggtcaccag ggcgacagag ccgtagccgg tatccggcgg
     3901 ggagccgagt cacttcgggc cgaagcgggc ctcacatccg gcggtgaagc cgcggtcacc
     3961 agcgcgacag agccgtagcc gatgggtggt agaaccgtag ccgatgggtg gtagaaccgt
     4021 agccgatgcg atggcagagc cgggccttac atccgggggc ggagccgggg tcaatagagc
     4081 cgtggcccat ttccggcggc gaaagaccga acgctcacct aggagcgtta ctgatgcgat
     4141 acagatgcgt ggcgctgcgg atgaagaggg agctgtggga gatggccatg gaggcgaggg
     4201 ttgaggcgtc gagttggttt gttgcaaggt gctttagttg gcggccgggg gcgatgacga
     4261 cggagatgcc gtcttcgctc aggaaataga tgcgcccgtc ggcatagacg ggtgacgcgg
     4321 agtaggcgcc gtcgagacgc gcgcgccaga gttcttcgcc ggttttggcg tcgatgcagg
     4381 tcgcgacgcc gttgtcgttc acgatgtaca actcgtcgcc tacaagcagc ggtgaaggcg
     4441 tccgcgggat cgcgcgtccg agcttccacg cgatctt
//
LOCUS       DASWTX010000660         2923 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_246221, whole genome shotgun sequence.
ACCESSION   DASWTX010000660 DASWTX010000000
VERSION     DASWTX010000660.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2923)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2923)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2923
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246221"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..759
                     /locus_tag="VGD38_10105"
     CDS             <1..759
                     /locus_tag="VGD38_10105"
                     /inference="COORDINATES: protein motif:HMM:NF018387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1175 family protein"
                     /protein_id="HEY0728412.1"
                     /translation="ENVPAPVKSAVVSPAANSPARNGSELVDSDNDGIPDPIELRSFQ
                     DRDSFRRWFTAIAETQFYQLSDQWNAEQRDCAGLARFAMREALRRHDRIWFQKMGPAY
                     QSVAPDVKSFDLDRNPFGEKIFRTDFGSFAETDVRNGRFSEFADARTLKNFNVVFVSR
                     ERREAQPGDLLFFYQPWVQKYPYHVMIFLGQARIAPNGAQDWVVYHTGSSPVDKGTVK
                     KVELSVLDQHPDPRWRPIERNKNFIGFYRLKILQ"
     gene            780..>2923
                     /locus_tag="VGD38_10110"
     CDS             780..>2923
                     /locus_tag="VGD38_10110"
                     /inference="COORDINATES: protein motif:HMM:NF013957.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MG2 domain-containing protein"
                     /protein_id="HEY0728413.1"
                     /translation="MPNNKIRRYLAAGIIYLAVVASVLGFNVIRARTAPPATPPPVEE
                     APKISLTTPYFSLTTNRSYSPNESARLWASYQNIDYLDFRVYRIKDPNKFFKQLDNPH
                     EMGEKEKEQISQGYGARPSLLERTHRLKTSLYGAVKTFVRTHLQRQHRETFNQEFRKD
                     PPAERTPLNVADYARVPLLNPDQKVKDWREKLPALENDYDSRMIPLGKMDPGVYLVEG
                     VNGGMRAYSIAIVTNLTMIEKTNRRGQVMVYIVDRKSGAPREGVAVEITNANNTLTTG
                     KTDKLGIFKTNVKVPEQPEIPADDFNPEEPRNKPLLIMARESDNFVISDVDSFYFGGY
                     GGGLNREDVTSYIYTDRPIYRPAQSVFFKGILRQWTTNGYKLLDSKTVKVTIEDPDAG
                     KVFEKDLPLSDRGTFSGQLDMTEEAPLGSYNITASIGEVSTSGYFQVQEYKKPEFKVG
                     VKVAQQFVPVGEKVRFTVNANYFFGAPVTNAEVHYYVYKQRYYHWWWDNDSDEFDDAA
                     GPANEGEDDEDYGYYGTDLVTEGDATLNARGEAYIDFEVPAPDPKEEWDYSYRLEAQV
                     TDSSRREMQGAASFIGTRGKAVADAYPERYLYYQGDAANIRVKTADYAGKPVSEKVTL
                     KFIEQKYEKKSRWEENNGYKYEIVDYILHERELATGEVNTDSEGNATYNFTVPSPGSI
                     YVKAIIYENGREIVNRGGGFWAPDKMGQWSDFS"
BASE COUNT          728 a          849 c          791 g          555 t
ORIGIN      
        1 gagaatgttc ccgcgcccgt gaagagcgca gtcgtgagcc cggcagccaa ctcgccagct
       61 cgtaatggaa gtgaactggt cgattccgat aacgacggca tacccgatcc gatcgagttg
      121 cgcagctttc aggatcgcga cagctttcga cgctggttca ccgcaatcgc cgaaacgcag
      181 ttctatcaac tcagcgatca atggaacgcc gagcagcgcg actgcgcggg actagcacgg
      241 ttcgcaatgc gtgaagcact gcgtcgtcac gatcggatct ggttccagaa gatgggaccc
      301 gcataccaaa gcgtcgcgcc cgacgttaag agtttcgatc tggaccgcaa tccgttcggc
      361 gaaaagatct ttcgtacgga cttcggatcg tttgccgaaa ccgacgtccg caacggccgc
      421 ttttcagaat tcgccgacgc tcgcaccttg aaaaatttca acgtcgtgtt cgtcagccgc
      481 gagcgccgcg aagcacagcc gggcgatctg ctcttctttt accaaccgtg ggtccagaag
      541 tatccgtacc acgtgatgat atttctgggc caggcgcgca tcgcaccgaa tggcgcgcag
      601 gactgggtcg tttatcacac cggctcgtcg cccgtcgaca aaggaaccgt gaagaaggtc
      661 gagctttcag tgctcgatca gcatcccgat ccacgctggc ggccgatcga acgtaacaag
      721 aattttatcg ggttctatcg cttgaagatt ttgcagtgag tcgtacgagg attactaacg
      781 tgcctaataa caaaattcgt cgttatcttg cggccggtat catctatctc gcggtcgtcg
      841 cttcggtcct tggcttcaac gtcatccgcg cgcgcactgc gccgccggca actccgccgc
      901 ccgtggaaga agctccgaag atctcgctca ccacgccgta cttttcgctg acgacgaatc
      961 gctcttactc gccaaacgaa tcggcgcggc tgtgggccag ctatcaaaac atcgactacc
     1021 tggatttccg cgtctatcgc atcaaagacc cgaacaagtt tttcaaacag ctcgacaatc
     1081 ctcacgaaat gggagagaaa gaaaaagagc aaatctcgca gggttacggc gcgcgcccgt
     1141 ctctgctcga gcgtacgcac cgcttgaaga cttcactcta cggagcagtc aaaacttttg
     1201 tccgcactca cctgcaaaga cagcatcgcg aaacgttcaa tcaagaattt cgcaaagatc
     1261 cgcctgccga acgcacgccg ctgaacgtcg ccgactatgc gcgcgtgccg ttgctgaatc
     1321 cggaccagaa agtgaaagac tggcgcgaga agctgcccgc gctggaaaac gattacgaca
     1381 gccggatgat tccgctgggc aagatggatc cgggcgttta cctggtcgaa ggtgtcaacg
     1441 gcggtatgcg cgcttattcg atcgcgatcg tgaccaacct cacgatgatc gaaaagacga
     1501 accgccgcgg tcaggtcatg gtctacatcg tcgaccgcaa gtcaggcgcg ccacgcgaag
     1561 gcgtcgcagt cgaaatcaca aacgcaaaca acacgctgac cactggtaag accgacaaac
     1621 tcggcatctt caaaacaaac gtgaaggttc ccgagcagcc ggagatcccg gcggacgact
     1681 tcaatccgga agaaccgcgt aacaagccgc tgctgatcat ggcgcgcgag agcgataact
     1741 tcgtcatctc cgacgtcgat tcgttttact tcggcggcta tggcggcggg ctcaacagag
     1801 aagacgtgac cagctatatc tacaccgacc gtccgatcta ccgccccgcg caatcagtct
     1861 tctttaaagg aatcctgcgc caatggacca cgaacggtta caaactgctc gacagcaaaa
     1921 ccgtcaaggt aacgatcgaa gatccggacg ccggtaaggt ttttgaaaag gacctgccgc
     1981 tttcggaccg cggcacattc agcggccagt tagacatgac ggaggaagcg ccactcggca
     2041 gttacaacat caccgcgtcg atcggcgaag tcagtacgag tggatatttc caggtccagg
     2101 aatacaagaa gcctgagttc aaagtcggcg tcaaggtggc ccaacaattc gtgcccgttg
     2161 gcgagaaggt tcgtttcacc gtcaacgcta attacttttt cggcgcgccg gtcacaaacg
     2221 ccgaggtgca ttactacgtt tacaaacaac gctattacca ctggtggtgg gacaacgatt
     2281 cagacgaatt cgacgacgcg gccggtccag ccaatgaagg tgaagacgac gaggactacg
     2341 gctactacgg caccgatctc gtaaccgaag gtgacgccac gttgaacgcc agaggcgagg
     2401 cgtatatcga cttcgaagtg cccgcgcccg atccgaaaga agaatgggac tactcgtatc
     2461 gcctggaagc gcaggtcacc gactcctcgc gccgcgagat gcagggcgct gcttcattca
     2521 tcggcacgcg cggcaaggcc gtcgcggacg cgtatcccga acgttacctt tattaccagg
     2581 gcgacgccgc caatattcgc gtgaagaccg cggattacgc cggtaagccc gtctccgaaa
     2641 aagtcacgct gaagttcatc gaacaaaagt acgaaaagaa aagcaggtgg gaagagaaca
     2701 acggttacaa gtatgagatc gtcgattaca tccttcacga acgcgagtta gcgaccggcg
     2761 aagtgaacac cgacagcgag ggcaacgcaa cttacaactt cacagtgccc tcgcccggta
     2821 gtatctacgt caaagccatc atctacgaaa acggcagaga gatcgtcaat cgcggcggtg
     2881 ggttttgggc gcccgacaag atgggccaat ggtcggattt ttc
//
LOCUS       DASWTX010000661         2299 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_293617, whole genome shotgun sequence.
ACCESSION   DASWTX010000661 DASWTX010000000
VERSION     DASWTX010000661.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2299
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293617"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..313
                     /locus_tag="VGD38_10115"
     CDS             <1..313
                     /locus_tag="VGD38_10115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728414.1"
                     /translation="DIDLVGRIVQFGRGMIEEVSRQMFRQFSTCVKAQLEVADEPPAG
                     DPQSADAPDAPQAAAAPSAIPPPETKAVAAAPLAFRALWAIIARFFRGLFGGSAKADR
                     T"
     gene            complement(310..1665)
                     /locus_tag="VGD38_10120"
     CDS             complement(310..1665)
                     /locus_tag="VGD38_10120"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0728415.1"
                     /translation="MIRFSVTRLRVTGVLFVAFCLLVLTLPVRSSTQNQNVTVVHAGR
                     LIDGVSNTVRNDVSVIIEGGQIREVRNGKAEIAGAKAIDLSGYTVMPGFIDCHTHLTF
                     QVDKGRTLKDYIFKRNAEIAIEASVYAQRTLMAGFTTVRDVGGPEFIDVSLRDAVNAG
                     TIPGPRMFVSTRIVTITGGHGDFSAGLRDNLIPEPDYQRGIVNSPEDGVRAVRYLVKY
                     GADQIKIAATGGVLSLGDSKAGEQFTLAEMKAIVETAHMLGRKVAAHAHGAEGLKNAL
                     RAGVDSIEHGTFLDDESIALFTSGKAYLVATISAGKWVEANAKNYPPVIAAKAAGMGE
                     LIEKAFGRAYQRKVRIAFGTDAGVFPHGDNANEFVYMVEAGMPPMEAIMSATRNAADL
                     LGASAKLGSVQAGRYADLVAVKGDPLTDIKLLKQISFVMKDGRVYKEPEAVTRTSQVV
                     R"
     gene            1928..>2299
                     /locus_tag="VGD38_10125"
     CDS             1928..>2299
                     /locus_tag="VGD38_10125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0728416.1"
                     /translation="MFSALAFRTAYQSLLIAFACLCLLGNASAQRVSSESSTAADLGT
                     GGRFVIQGTVIFPSGQRVDRPLKVRLATPTRGELSTMTDTNGRFLFYRLTPGNYTIII
                     DADENYEAVNERANIVQAGRSM"
BASE COUNT          440 a          682 c          650 g          527 t
ORIGIN      
        1 cgatatcgat ctggtgggaa ggatcgtgca attcgggcgc gggatgattg aagaagtttc
       61 gcggcagatg tttcggcagt tttcgacgtg tgtgaaggcg cagttggaag ttgctgacga
      121 gccgcctgcc ggagatccgc aatccgcgga cgcgcctgac gcgccgcagg cagcggcggc
      181 gccgtcggcg attccaccac cggaaacaaa agccgtcgcc gccgcgccgc tcgcctttcg
      241 cgcgctgtgg gccatcatcg cgcgcttctt ccgtgggcta ttcggcggca gcgcgaaggc
      301 tgaccggact taacgaacga cttgcgacgt acgtgttact gcttcgggtt ccttgtagac
      361 gcggccatcc ttcatcacaa aactgatctg cttcaggagt ttgatgtctg ttagcgggtc
      421 tccttttaca gccacgaggt ccgcataacg ccctgcttga acactgccta acttcgccga
      481 cgcgccgagc agatccgcgg cgttgcgggt cgcggacatg atcgcttcca ttggcggcat
      541 tcccgcttcg accatgtaga caaactcgtt cgcgttgtcg ccgtgtggaa agacaccggc
      601 gtcggtgccg aacgcgatcc tgacctttcg ctggtaggcg cgtccgaatg ctttttcgat
      661 cagctcgccc atgcccgcgg ctttcgctgc gatgacaggc gggtagtttt tcgcgttcgc
      721 ttctacccac ttgccggcgc tgatcgttgc cacgaggtac gctttgcccg atgtgaataa
      781 agcgatcgac tcgtcgtcga gaaatgtgcc gtgctcgatc gagtcgacac ccgcacgcag
      841 agcgttcttc agtccttccg ctccatgcgc gtgcgccgcg acctttcgcc cgagcatgtg
      901 agctgtttcg acgatggctt tcatctcagc cagtgtgaat tgctctcccg ccttcgagtc
      961 gccgagagac agaacaccac cggtcgcggc gatcttgatt tgatccgctc catacttgac
     1021 gaggtatcgc actgcgcgaa cgccgtcttc aggcgagttg acgatgcctc gctggtagtc
     1081 aggttcgggt atgaggttgt cgcgcaaacc cgcagagaag tcaccgtgtc cgccagtgat
     1141 ggtcacgata cgtgtcgaca cgaacatccg cggacccgga atcgtgccgg cgttgaccgc
     1201 atcgcggaga cttacgtcga tgaactcagg cccgccgacg tcgcgaacag ttgtgaaccc
     1261 ggccatgagt gttcgctgcg catagactga cgcttcgatc gcgatctcgg cgtttcgttt
     1321 gaagatgtag tctttgagcg tccggccttt atccacttga aacgtgagat gtgtgtggca
     1381 gtcgataaaa ccgggcatga cagtgtagcc gctcagatcg atcgccttgg cgcccgctat
     1441 ctcggctttt ccgtttcgca cctcgcgtat ctgtccgccc tcaatgatca ccgacacatc
     1501 attgcgaacc gtgttgctga cgccgtcgat cagccgtcct gcatgaacga ccgtgacgtt
     1561 ttgattctgc gttgaagaac gaacaggcag cgtcaggact aacagacaga acgcaacgaa
     1621 aagaactcca gttaccctca ggcgggttac gctgaatcta atcatgatgg gtgtccctgt
     1681 tttagatggt cttgtatgcg atttgaagcg actcatgcta cctctatatg actgcgcgag
     1741 gcaaaaacat ttcgcaagtt tctagccgtt gtttggatcg tgatcctggc cgcggctacc
     1801 ttgtgacaaa cggctccgcc ggccaattcc cccgtttgac ctatatttct tgcggcagct
     1861 tgcatataat tctgcctcca gccttaacca gcgaattatc caacggcgtc gaaaggagac
     1921 cagtctcatg ttttccgcac tggcgttcag aaccgcttac caatccttgc tgattgcctt
     1981 cgcctgtctg tgtctgctcg gcaatgcgtc cgcacaacgc gttagctcgg aatcgtcgac
     2041 cgccgcggac ctggggaccg gaggcaggtt cgttattcag ggaacggtca tctttccgtc
     2101 cggccagcga gtggatcggc cattgaaagt tcgtctcgcc acgccgacgc gcggcgagct
     2161 cagcacgatg accgacacga acggcaggtt tttgttttac cggctcacgc ccggcaacta
     2221 cacgatcatt atcgatgcgg atgaaaacta cgaggccgtc aacgaacggg ccaacatcgt
     2281 tcaagcgggc cgcagcatg
//
LOCUS       DASWTX010000662         2488 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_337165, whole genome shotgun sequence.
ACCESSION   DASWTX010000662 DASWTX010000000
VERSION     DASWTX010000662.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2488
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337165"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..380
                     /locus_tag="VGD38_10130"
     CDS             <1..380
                     /locus_tag="VGD38_10130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728417.1"
                     /translation="GIKRHQDGFHVLVGDFNTLAPGEALETKRMPAWIRALIWISGRQ
                     LQRETIQFVLDASYCDGYRMLHPDVKGYTFPTWDQRVRLDYVFLPCAFKERLKTCEVI
                     IEPPERIKAASDHCPLLAVLATD"
     gene            complement(387..890)
                     /locus_tag="VGD38_10135"
     CDS             complement(387..890)
                     /locus_tag="VGD38_10135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728418.1"
                     /translation="MSHLEAFHRTLAANRPPGFQRSVVFRIEDADWLQTRGPAYEEWY
                     VLDGSAAMDPLNDAAVSGVCEAPHNLVAREAAGGTGGLYRLRAGEGVLHEARFAVWLS
                     KPEGVTYRDFYDALASLTSQPGVALWGRQMTLGPTTEFCLHSQTPVQLPPGYTGRQFP
                     LTCLIRV"
     gene            complement(959..1441)
                     /locus_tag="VGD38_10140"
     CDS             complement(959..1441)
                     /locus_tag="VGD38_10140"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEY0728419.1"
                     /translation="MPVAEGERFIDFKLQNQDGKTVSLDDFKGKWLVVYVYPKDDTPG
                     CTIQGKSFTASKEDFDNANIAVVGVSEDDVTSHQNFSNKFGFKIDLLADPNHELLGAA
                     DVGQSEYKGTMYWNRTSFVIDPEGKLRKIYRGVNPEGHEQVLLNDIRAMQALGSGAHG
                     "
     gene            complement(1472..1921)
                     /locus_tag="VGD38_10145"
     CDS             complement(1472..1921)
                     /locus_tag="VGD38_10145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728420.1"
                     /translation="MKIIGRNVLLAVLACVVTVSIQTTAAAPQLPNPVLAFLGSEQVE
                     AGGKKSTRYYFEVHNKDKYPADLFAAAPDLPACGTNKSASRTWVDVYDQKGKRLNGFC
                     ALGKPSDLSRIWFALDQEEVPPSWVYIEMNDRKTNTKYKSNLAETTL"
     gene            complement(1962..>2488)
                     /locus_tag="VGD38_10150"
     CDS             complement(1962..>2488)
                     /locus_tag="VGD38_10150"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF013206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HEY0728421.1"
                     /translation="PSGAWLPAVVAGDTGVLMGQRLQSALTDPNSPNVVAPGKRPRIT
                     LTPTLVLKNGEPFMVLSTPGGDNQDQALLQVLLNVIEFGMNPQEAVEAARFDTQHYVS
                     SFDDHEFLPGSLNVESRVGLKTIQELTNKGHKVKVQSEWGTLSAPTVIIYDPKTGVSS
                     GGADPRRSRYAVAW"
BASE COUNT          510 a          754 c          680 g          544 t
ORIGIN      
        1 aaggaatcaa acgtcaccag gacggttttc acgtgctcgt cggcgacttc aacacgctcg
       61 cgcccggcga ggctctcgaa accaaacgca tgcccgcgtg gatccgcgcg ctgatctgga
      121 tcagcggccg gcaactgcaa cgcgagacga ttcagtttgt gctcgacgcg agttattgcg
      181 acggctaccg gatgttgcac ccggacgtga agggctacac atttccgacg tgggaccagc
      241 gcgtgagatt ggattacgtg tttctgccgt gcgctttcaa ggagcgcttg aagacgtgcg
      301 aagtgattat cgagccgccc gagcgaatca aggccgcgtc agatcattgt ccgttgctgg
      361 ccgttttggc cacggattaa aacggactag acacggatca gacaagtcag cgggaattgc
      421 cgcccggtgt agcccggcgg taattgaacc ggcgtttgac tgtgcaaaca gaactcggtc
      481 gttggaccaa gcgtcatctg ccggccccaa agcgcgacac ccggttgtga ggtaagcgaa
      541 gcgagcgcgt cgtaaaagtc tcgataagtc acgccttcgg gtttagacaa ccagacggca
      601 aagcgcgctt cgtgcaaaac tccttcaccc gctcgcaagc gatacaaccc gcctgttccg
      661 cctgcggctt cgcgcgcgac caggttgtgc ggcgcttcgc aaacaccgga aaccgccgcg
      721 tcgttcaacg ggtccatcgc ggccgaaccg tcaagcacgt accactcttc atacgctggt
      781 ccacgcgtct gcaaccagtc agcgtcttca atacgaaaca caaccgaacg ctgaaaacct
      841 ggcgggcgat tggccgcgag cgtgcgatga aacgcttcca ggtgagacac gtaaacttca
      901 gtgtctacac tcgcctgcgg ccaatgccaa aacacgtatg ccagcataat tcaggctttt
      961 atccgtgcgc tcccgagccc agcgcctgca tcgcgcgaat gtcgttgagc agcacttgct
     1021 cgtgaccttc gggattcact ccgcgataga tcttgcgcag cttgccttcc ggatcgatca
     1081 caaaactggt gcggttccag tacatcgtgc ccttgtactc actctggccc acgtccgccg
     1141 cgcccagcaa ctcgtggttc ggatccgcca gcaaatcgat cttgaaacca aacttgttcg
     1201 agaaattctg atgcgacgta acatcgtctt cactgactcc caccaccgcg atgtttgcgt
     1261 tgtcaaaatc ctctttgctc gccgtgaacg acttcccctg aatcgtacag cccggcgtgt
     1321 cgtctttcgg atagacgtaa acgacgagcc acttgccttt gaagtcgtcg agcgagacgg
     1381 tcttgccgtc ctggttctgg agtttgaaat cgataaagcg ttcgccttct gctaccggca
     1441 ttgtttgttc cccctcgtta acggttgaga tttacaaagt tgtttccgcg agatttgatt
     1501 tgtacttcgt gttggtcttg cgatcgttca tttcgatgta gacccaactc ggcggcactt
     1561 cttcctggtc cagcgcgaac cagatgcgcg aaagatcgct cggcttgccg agcgcgcaga
     1621 acccattcag ccgctttccc ttctgatcgt aaacgtccac ccaggtgcgc gaggcgcttt
     1681 tgtttgttcc gcaagctggc aggtctggcg cggccgcgaa caagtccgcc ggatatttat
     1741 ccttgttgtg gacttcaaag taatagcgtg tgcttttctt gccaccggcc tccacctgtt
     1801 ccgagccgag aaaggcgagc accggatttg gaagctgggg cgccgcggcg gtagtttgaa
     1861 tcgaaactgt tacgacgcag gcaagcacag ccaacaacac atttctgccg atgatcttca
     1921 tacaggggga ctccttcgca gagttttaat cagaccggct tctaccatgc aacggcgtag
     1981 cggctgcggc gcggatcggc gccgccggac gacacgccgg ttttcggatc gtaaatgatg
     2041 accgtcggcg cagacagtgt gccccactcg ctctgcacct tcactttgtg tcccttgttc
     2101 gtgagctcct ggatcgtttt cagaccgaca cgcgattcga cgttgagtga accgggaaga
     2161 aactcgtgat cgtcaaacga actgacgtag tgctgcgtgt cgaagcgcgc ggcttccacg
     2221 gcttcctgcg gattcatccc aaactcgatc acgttcagca acacttgcaa caacgcctga
     2281 tcctggttgt cgcctccggg cgtgctcagc accatgaacg gttcgccatt tttcaacacg
     2341 agcgtcggcg tcaacgtgat acgcgggcgt tttcccggcg ccacgacgtt cggactgttc
     2401 ggatcggtca acgcggactg caggcgttgg cccatcagca caccggtgtc accggcaaca
     2461 acggccggca accacgcgcc gctcggcg
//
LOCUS       DASWTX010000663         3046 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_402634, whole genome shotgun sequence.
ACCESSION   DASWTX010000663 DASWTX010000000
VERSION     DASWTX010000663.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3046
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_402634"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..433)
                     /locus_tag="VGD38_10155"
     CDS             complement(<1..433)
                     /locus_tag="VGD38_10155"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY0728422.1"
                     /translation="MKEETLNGAGGVSIFMRSWQPAGDPRAIVAMVPGFNSHSGYFKW
                     VGEQFAANGLAAYSVDLRGRGKSEGERFYIESFSEYLSDVDLMVQTAKSRQPGLPVFV
                     LGHSAGGVISSVYTLEHQDELAGLICESFAFRVPAPDIALAA"
     gene            complement(449..1288)
                     /locus_tag="VGD38_10160"
     CDS             complement(449..1288)
                     /locus_tag="VGD38_10160"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY0728423.1"
                     /translation="MSTITTKDGTEIYYKDWGEGQPVVFSHGWPLSADAFEDQMFFLA
                     ERGYRCIAHDRRGHGRSSQPWNGNDLDTYADDLAELVQALDLKDAIHVGHSTGGGEVA
                     RYIGRHGTSRVAKAVLISAIPPLMLKTEANPGGLPIEVFDQLRAGVQADRSQFFKDLS
                     APFYGANRTGAEVSQGVRDSFWWQGMLCSFPAAYYCIKAFSETDTTEDLKKFDVPTLI
                     LHGDDDQIVPIGASALLSSKIVKGAQLKVYPGYPHGMCQTHKDVINADLLAFIKGEKA
                     ASA"
     gene            1474..2664
                     /locus_tag="VGD38_10165"
     CDS             1474..2664
                     /locus_tag="VGD38_10165"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEY0728424.1"
                     /translation="MNSKRNTLRVSRTTVGLLLVVLLASCSWSSDDGKPSIEFTKVPP
                     ADKGGAQTSDTISGRVRNARPEYRVVLFARSGAWYVQPYADQPFTKIEPNSTWASPTH
                     LGTEYAALLVEPGYVPPAFVPELPEQGNGIVTLVVVEGTPPFWRSWWFTITLLALASL
                     ALFMAYRWHVRQMQKKLTLRFEERLAERTRIAQDLHDTLLQGLMSASMQLHVANDHLP
                     DDSPAKPLVNRVMELMSQVIQEGRDAVRGLRSPSSNTDNLETAFSQIRQQLGNGEVKD
                     YRVIVEGKPLQLHPIIRDEAYRIGREALVNAFHHANADNIEVELEYSPKNLRLIVRDD
                     GAGIDQHVLESGKDGHWGLAGMRERAESIGARLRVWSREHAGTEVELVIPGHIAFVPM
                     KEKE"
     gene            2661..>3046
                     /locus_tag="VGD38_10170"
     CDS             2661..>3046
                     /locus_tag="VGD38_10170"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0728425.1"
                     /translation="MSTPIRIFSVDDHPLLREGIAALVNNQPDMVIAGEAATGAEALQ
                     LFRKLQPDVTLLDLRLPDTNGIDILIAIRTEFPEARIIMLTTFEGDVEIHRALQAGAR
                     GYLLKNMPPSELLEVIRQVHAGKKRIP"
BASE COUNT          702 a          869 c          830 g          645 t
ORIGIN      
        1 aagccgcgag tgcgatgtcc ggggccggaa ctcgaaacgc aaaactctcg caaatcaatc
       61 ccgcaagctc atcctgatgt tccaaagtgt aaacactcga gatcacgccg cccgcactgt
      121 ggcccaacac aaacacaggc aagccgggtt gtcgtgactt cgccgtctgc accatcaaat
      181 ccacatcgct gagatactcc gaaaaactct cgatgtagaa gcgttcacct tccgacttgc
      241 cgcggccgcg tagatctacg gaatacgcgg caagcccgtt ggcggcgaac tgctcgccca
      301 cccacttgaa ataaccactg tgtgaattga aaccggggac catggcaacg atggcgcgcg
      361 gatctcccgc cggttgccac gagcgcataa agatcgacac accaccggcg ccgttgaggg
      421 tttcttcttt catcaattgt tctcctgttt atgcagacgc ggctttctcg cctttgatga
      481 aagcaagcaa atcggcattg atcacgtctt tgtgcgtttg acacatgccg tgcggatagc
      541 cggggtaaac ttttaactgc gcgcctttga cgatctttga cgagagcaac gcagaagcgc
      601 cgatgggcac gatctgatcg tcgtcaccgt gcaggatcaa cgtcggcacg tcgaatttct
      661 tcaggtcttc agttgtgtcg gtttcggaga atgctttgat gcaatagtaa gccgctggaa
      721 aactgcacag cattccctgc caccagaacg aatcgcgcac gccctgcgac acttctgccc
      781 ctgttcgatt ggcgccgtaa aacggagcgc tcaaatcctt gaaaaactgc gagcgatccg
      841 cttgcacacc cgcacggagt tgatcgaaaa cttcgatcgg caagccgccg gggttcgctt
      901 cagtcttcaa catcaacggc ggaatcgcgc tgatcaacac cgctttcgca acgcgcgacg
      961 ttccgtgccg gccgatgtaa cgtgcgactt cgccgccgcc ggtcgagtga ccgacgtgaa
     1021 tcgcgtcctt gagatccagc gcctgcacca gctccgcaag atcgtctgca taagtgtcca
     1081 agtcgtttcc gttccacggt tgactcgaac gcccgtgacc acgccggtcg tgagcaatgc
     1141 agcgatagcc gcgctccgcg agaaagaaca tctgatcctc gaacgcatcc gccgagagtg
     1201 gccaaccatg actaaacaca accggctgtc cctcgcccca atccttgtag taaatctccg
     1261 tgccgtcttt ggtcgtaatc gtgctcatat aaagaatggc actccttctt attggaattt
     1321 gcagtatcat tgtggccgca aactaacaat ctgcacatcc cgtgatctga gagtttttga
     1381 ctacctcgat agtggtagcc acattgccgt aacgaatctg ctcagttgtt ctgagttcag
     1441 cctttaggct gccggaaaag cgcaagctaa agcttgaact ccaaacgaaa tactttgcgc
     1501 gtctcccgaa ccaccgtcgg tctgctgttg gttgtgttgc tggcgagttg tagctggtca
     1561 agtgacgacg gcaaaccgtc aatagaattc acgaaagtgc cgcccgctga taaaggcggt
     1621 gctcaaacgt ccgacacgat cagtggacgt gtgcggaacg ctcgtcccga atatcgcgtg
     1681 gttttgtttg cgcgcagtgg cgcgtggtac gtccaaccct acgcggatca accgttcaca
     1741 aagattgaac ccaactcgac gtgggccagc ccgacgcatc tcgggactga atacgcggcg
     1801 ctgttagttg aaccgggtta cgttccacca gctttcgttc cggagttgcc tgagcaaggc
     1861 aacggcatcg tcacgctcgt tgtcgtcgaa ggaacgccgc cgttctggcg atcgtggtgg
     1921 ttcacgatca cactgctggc gctcgcatcg cttgcgttgt tcatggccta tcgttggcac
     1981 gtgcggcaga tgcagaaaaa gctcacgctg cgttttgaag aacgtctcgc agaacgaacg
     2041 cgcatcgcgc aggatctgca cgacacgttg ttgcagggac tgatgagcgc ctcgatgcaa
     2101 ttgcacgtgg cgaacgatca cctgccggat gattcgcccg cgaagccgct cgttaatcgc
     2161 gtgatggaac tgatgtcgca ggtcatacag gaaggacgcg acgcagtcag aggtttgcgt
     2221 tctccgagta gtaacactga taacctcgag actgcgttct cgcaaattcg acagcagctc
     2281 ggcaacggag aggttaagga ttatcgagtg atcgtcgaag gcaagccgtt acagttgcat
     2341 ccgatcattc gtgacgaagc gtatcgcatc ggccgcgaag cgctggtgaa cgcgtttcac
     2401 cacgcaaacg ctgacaacat cgaagtcgaa ctcgaatact cgccgaaaaa tttgagactg
     2461 atcgtgcgcg acgacggggc cggtatcgat caacacgtgc tggaatcggg aaaagacgga
     2521 cattggggtc tcgccggaat gcgtgaacgc gcggaaagca tcggcgcgag actcagagtc
     2581 tggagccgcg aacatgcggg cacggaagtc gaactcgtaa tccccggaca catcgctttt
     2641 gtaccaatga aagaaaaaga atgagcacgc ctattcgtat tttcagtgtc gacgatcatc
     2701 cattgctgcg cgaaggcatc gccgcgctcg tcaacaatca accggacatg gttatcgccg
     2761 gcgaagccgc aaccggcgcg gaggcgcttc agttattcag gaaactgcaa cctgacgtca
     2821 cgttgttgga ccttcgttta ccggacacga atgggatcga catcctgatc gcgattcgca
     2881 ccgagtttcc cgaggcgcgg atcatcatgc tcacgacgtt tgaaggcgac gtggagattc
     2941 atcgcgcgct gcaggcgggc gcgcgtggtt atctgctcaa gaacatgccg ccgtcagaat
     3001 tgctcgaggt gattcgccag gttcacgcgg gaaagaaacg tattcc
//
LOCUS       DASWTX010000664         1835 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_224497, whole genome shotgun sequence.
ACCESSION   DASWTX010000664 DASWTX010000000
VERSION     DASWTX010000664.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1835
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224497"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(100..876)
                     /locus_tag="VGD38_10175"
     CDS             complement(100..876)
                     /locus_tag="VGD38_10175"
                     /EC_number="1.1.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF005559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose 1-dehydrogenase"
                     /protein_id="HEY0728426.1"
                     /translation="MTYSPLELSGKVAVVVGGTSGIGRAIAHGFAQAGADVIPTSRRA
                     EQVDAAAREIEEFGRRSLRVASNVSDRASLERVLSEAVAAFGKVDILVNSAGRTKRAP
                     TVDFAEADWNDIIDTNLTGTLRACQVFGRHMLERESGSIINIASLSTFVALYEVAAYS
                     ASKAAVGSLTKSLAIEWSSRGVRVNAIAPGVFRTALNHKLLDETERGREFKLRTPMKR
                     FGNVEELAGAAIFLASDAASFVTGEILAVDGGFLASGVNQ"
     gene            1152..>1835
                     /locus_tag="VGD38_10180"
     CDS             1152..>1835
                     /locus_tag="VGD38_10180"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: protein motif:HMM:NF013356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HEY0728427.1"
                     /translation="MGGNIWLSHDPGPSDYLAKLPVRDLVFEVLPTEEAVGRAMLAEI
                     IDAEAAKRGPLVMVLVGGRGGQALHRLLGARAKTDEYDALFARLHVFTQDALAPLRMD
                     NGLSFVRDFERLLGENFFRKVNSFTSMRTDAEDLEAELAGYVRQLETLGGIDLFFLGL
                     GPEAGAASHLAYIKPGSGATYSDMAGLIPISESILEHHINKFKAGGTVVTAADEAECR
                     AAKHILTLGP"
BASE COUNT          381 a          572 c          506 g          376 t
ORIGIN      
        1 tcgcgatctc gctagcatcg ttcatctctc gactcctcga aatttgattt tgactaaaac
       61 tcggactaaa taaccgccgt cggccattga agagtttttc tactggttca caccactcgc
      121 aaggaacccg ccgtccaccg ccaggatctc gccggtgacg aaactcgcag catcagaagc
      181 cagaaaaatc gccgcgcccg cgagctcttc gacgttgccg aaacgtttca tcggcgtgcg
      241 cagcttaaac tcccggccgc gctccgtctc gtcgagcaat ttgtgattga gcgccgtgcg
      301 aaacacaccg ggcgcgatcg cgttcacgcg cacgccgcga ctggaccatt caatcgccaa
      361 cgatttcgtc aacgaaccca ctgccgcttt gctcgctgaa tacgccgcca cttcatacaa
      421 cgccacaaac gtcgacagcg aagcgatatt gatgatgctc cccgattcgc gttcgagcat
      481 gtgacgccca aacacctggc acgcgcgcaa cgtgcccgta aggttcgtgt cgatgatgtc
      541 gttccagtcc gcttcggcaa aatcgacggt cggcgcgcgc ttcgtgcggc ccgccgagtt
      601 gaccagaatg tcgactttcc caaacgccgc aaccgcttcg ctcaacacac gctccagcga
      661 cgcccgatca gaaacattag aagcgacccg caaagaccgc cggccaaact cctcgatctc
      721 gcgcgccgcg gcatccacct gctccgcgcg ccgcgacgtg ggaatgacgt ctgctccagc
      781 ctgggcaaac ccgtgcgcga tcgcgcgtcc aatcccggac gtgccgccga cgaccacggc
      841 cactttgcca ctaagctcca gtggagaata ggtcataagt atgaattgtt ggctaaaggt
      901 tagaccactt ttagaaagtg cgcctactgt gtaccatcgc gcgtcgccca ccgtcaagca
      961 caaaaagtcg cgtactgatt tacgattagc tggttttacc agcgtcgttt cgagcccgaa
     1021 aatgttgctt gtgtagttac ggtccgcgtg ttaaagtctc gtctccgttg aaattggtat
     1081 taccattcgg gctattcaga gactgccagc agatgtcagc aaccagcaaa cagaccagcc
     1141 ggcgtcgttc tgtgggaggg aacatttggc tctcgcacga ccccggtccg agcgattacc
     1201 tcgcaaaact tcccgttcgc gacctcgttt ttgaggtgtt gccgaccgaa gaagcggtcg
     1261 gacgcgcgat gctagcggag attatcgacg cggaagccgc taaacgcgga ccgttggtga
     1321 tggtgctggt cggcggccgc ggtggtcagg cgctgcatcg cttgttgggt gcgagggcca
     1381 agaccgatga gtacgacgcg ctgtttgctc ggcttcacgt cttcactcag gatgcgctgg
     1441 cgcctttgcg aatggacaat ggcttgagct ttgtgcgcga cttcgagcga ctgctcggcg
     1501 agaacttctt ccgcaaagtg aacagcttca cgtcgatgcg cacggacgcg gaagatctcg
     1561 aagccgaact ggccggctat gtccggcaac tcgagacgct cggcggtatc gacctctttt
     1621 tcctcggtct cggtccggaa gctggcgctg cttcgcacct cgcgtacatc aaacccggtt
     1681 cgggcgcgac ttacagcgac atggcgggac tgattccgat ttcggagtcg attctcgagc
     1741 accacatcaa caagtttaag gccggcggca cggtggtcac cgcagcggac gaagccgagt
     1801 gccgcgcggc gaaacacatt ctgacgcttg gtccg
//
LOCUS       DASWTX010000665         3758 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_293677, whole genome shotgun sequence.
ACCESSION   DASWTX010000665 DASWTX010000000
VERSION     DASWTX010000665.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3758
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293677"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..371)
                     /locus_tag="VGD38_10185"
     CDS             complement(<1..371)
                     /locus_tag="VGD38_10185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728428.1"
                     /translation="MNKLTKAFAAATLMLAAAIAASGQGPCLTASKFGPTDQIGNMNY
                     VTPAKTLAATKLVTTGKSYRLAIETNKDTPAYPPRTFEVTIVQPGQNAGGTIGPTKTT
                     YNDDIISGWVGVGTQLDGLGH"
     gene            complement(441..2147)
                     /locus_tag="VGD38_10190"
     CDS             complement(441..2147)
                     /locus_tag="VGD38_10190"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY0728429.1"
                     /translation="MKNTLVLFVLVALSVAAVVLTAVHGQNQNGNGGKFRRARADKRI
                     ANQYIVVLKDDVADVEGESIRLANNFGGDRGNGHVYQRALKGFSVRMNEQQAARLADD
                     PRVDFVEEDSVVSLGAVQTGATWGLDRIDQRDLPLDGSYTFNATGSGVRAYIIDTGIR
                     ATHTQFGGRVVSGFTAINDGLGTNDGNGHGTHVAGTVGGSTHGVAKNVTLVAVRVLDS
                     SGNGTNSGVIAGVDFVTSNHQAGQPAVANMSLGGGASSALDTAVNNAVNDGVTFAVAA
                     GNETQNACNVSPARAPAAITVGSTTTSDARSSFSNFGTCVDIFAPGSSITSTWRTSDT
                     ATNTISGTSMASPHVAGVAALFLETNPAATPSQVTSAIINGSTLNKVTNPGTGSPNRL
                     LFSLLTGGGGPTPTPTPTPVPGAELLLNRGFESGGVNWTATAGVITNSTGQTPRTGSF
                     YAWLNGYGVTHTDSLFQQITIPSTANSATLSFWLKINSAETTTTTQFDRLQVQIRNSS
                     NTVLATLATYSNLNETTGYVLQTFNVSAFRGQTVRIYFLGTEDSSLQTSFVIDDTSCT
                     TQ"
     gene            2418..>3758
                     /locus_tag="VGD38_10195"
     CDS             2418..>3758
                     /locus_tag="VGD38_10195"
                     /inference="COORDINATES: protein motif:HMM:NF013400.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HEY0728430.1"
                     /translation="MSSISFFCDLTEATTPLPHFWEHTVGSDHAPVALRADWQRQLQQ
                     CHEELGFRYVRFHGLLSDDMRTLVRENERLVYSFFNADQVFDFLLSIGMKPFVELSFM
                     PAALASGTRTVFNYKANVTPPRDYKQWAALIQSLVAHWVQRYGLKEVREWFFEVWNEP
                     NLKSFWTGTQRDYFKLYRYTAFAIKEVDSSLRVGGPATARSEWIEDFVEFCERNKVPA
                     DFVTTHQYPTDGYDREGDTELHLFKSQRGIMRERAQDTRRYAGERPVYYTEWNSSANS
                     RDPLHDEPYAAAFVVSTILEAKGLVEGYSFWTFTDIFEEHGFQSLPFHGGFGLLTVHG
                     IAKPAFRAFELLHQLGDRQSLVDGLHDTVDCSVVQGEASVNVVLTNHTTPGHSIETEH
                     LEIKLDNAREPVAAHIWRIDADHANPKRLWEEMGRPEHLQSRDVEQLHEASRVVK"
BASE COUNT          756 a          999 c         1152 g          851 t
ORIGIN      
        1 atgtggccca gcccgtcgag ttgtgtaccg actccgaccc aaccgctgat gatgtcgtcg
       61 ttgtaggtgg tttttgttgg gccaatggtg ccgccggcat tctggcccgg ttgcacgatc
      121 gtgacttcaa acgtgcgcgg cgggtacgcg ggcgtgtctt tattggtttc gatcgcgagg
      181 cgataagact tacccgtagt caccagcttc gtggcggcga gtgtctttgc cggtgtgacg
      241 tagttcatgt tgccaatctg atcggttgga ccaaacttcg acgcggtaag acacggtccc
      301 tggcctgatg ctgcgatagc ggcggccaac atcaaggtag cggcggcaaa tgctttagtg
      361 agtttgttca tagttgtgct caagaaaaag ggacgagccg cttgagctcg tccctcgaga
      421 tcaatacgtc ggccgaactg ttactgtgtc gtgcacgacg tatcatctat cacaaaggac
      481 gtttgtagag aagagtcctc cgtgcccagg aagtagattc gaacggtttg gcctcggaag
      541 gcagacacgt taaaggtctg caaaacgtac cccgtcgttt cgttcaggtt cgaataggta
      601 gcgagtgtcg ccaacaccgt gttgctggag ttgcgaatct gcacttgcaa cctgtcgaac
      661 tgtgttgtgg tcgtggtctc ggccgaattg atcttcagcc agaaactcag cgtcgcactg
      721 ttggctgtcg atggaatcgt gatctgctgg aacagcgagt cggtgtgcgt tacgccgtag
      781 ccgttgagcc atgcatagaa cgatccggtt cgtggtgtct gtccggttga gttggtgatc
      841 acacccgcgg tcgcggtcca gttaacaccg cctgattcaa agccacggtt caatagcaat
      901 tccgctcccg gaacgggcgt cggagttggc gtcggcgttg gaccaccacc accggtcaac
      961 agcgagaaga gcaggcggtt gggcgaaccc gttcccggat tggtgacctt gttcagcgtg
     1021 gacccgttga tgatcgcgga ggtcacttgc gacggtgtcg cggccggatt tgtttcgagg
     1081 aacaaagccg cgacgccggc aacgtgcggt gacgccatcg acgtgcccga gatcgtgttg
     1141 gttgccgtgt cgctggtcct ccacgtcgag gtgatgctgc tgcccggagc aaagatgtcg
     1201 acacaggtgc cgaagtttga gaacgaagag cgcgcgtcac tcgtcgtggt tgaacccacc
     1261 gtgatcgcgg ccggtgcgcg agccggcgaa acgttgcagg cgttctgagt ttcgttaccg
     1321 gccgcaactg cgaaggtcac gccgtcgttg actgcattgt tgacggcggt gtcgagcgcc
     1381 gatgacgcgc cgccgcccaa gctcatgttg gcgactgcgg gttggcccgc ctggtgattc
     1441 gacgtgacga aatcaacacc ggcgatgacg ccggaattgg ttccgttacc actcgagtcg
     1501 agcacgcgaa ccgcgacgag tgtgacgttc ttcgcgacgc cgtgggttga accgccaacg
     1561 gtgccggcga cgtgcgtgcc gtgtccgttg ccgtcattcg taccgagacc gtcattgatt
     1621 gcagtgaaac ccgaaaccac gcggccgccg aattgagtgt gggtggcacg aattccggtg
     1681 tcgatgatgt aggccctgac gccgctgccg gtggcgttga aggtatagct tccatcgagc
     1741 ggcagatcgc gttgatcgat gcgatcgagt ccccacgtgg cgccggtttg gaccgcaccc
     1801 aaactgacca ctgagtcttc ttcgacaaag tcgacgcgcg gatcatccgc gagtctcgcg
     1861 gcttgttgtt cattcatgcg caccgagaag cccttgaggg cgcgctgata gacgtgaccg
     1921 ttgccacgat cgccgccgaa attgtttgcg aggcgaatgg attcaccttc gacgtcggcg
     1981 acgtcgtctt tgagcaccac gatgtactga ttggcgattc gtttgtccgc gcgcgcgcga
     2041 cggaacttcc cgccattgcc gttttgattc tggccgtgca ccgcagtcag gaccaccgcc
     2101 gccacggaca aggccaccaa cacaaacaga acgagcgtgt tcttcattat gacctccagc
     2161 gagttgtacg aacaggttac tgggtgtaat gggagcgtcg tctattcgcg tccgtagaca
     2221 ctagggcggt ggttttggaa gcgaataagt tgtcgggagt tacaaactgg gagtagaact
     2281 cgggaggacc cgttacttgt attctgagcg cggcagataa tagagccttg tcttcataaa
     2341 atcaaggacc aatttttgtc agacttgcgc ggcacacatt tgcgaagatt cggtgtcata
     2401 gtcacgacgg aatccgaatg agcagcatca gcttcttctg cgaccttacc gaagcaacaa
     2461 cgccgctacc gcatttctgg gagcacaccg tcggcagcga tcacgctccg gttgcgttgc
     2521 gtgctgattg gcagcggcag ttgcagcagt gtcacgagga gcttgggttt cgctacgtgc
     2581 gttttcatgg tctgctttcc gatgacatgc gcacgctggt ccgcgagaac gagaggctgg
     2641 tctattcgtt cttcaacgcc gatcaggtgt tcgactttct cctctcgatc ggcatgaagc
     2701 ctttcgtcga gttgagcttc atgccggccg cgctcgcttc cggaaccagg actgtcttca
     2761 attacaaagc caacgtcact ccgccgcgag attacaagca atgggcggcg ctgatacaga
     2821 gtctggttgc gcattgggtt cagcgttacg ggttgaagga agtcagggaa tggtttttcg
     2881 aagtgtggaa cgagccgaac ctgaagtcgt tctggaccgg cacacagcgc gactatttca
     2941 agctctatcg ctacacggct ttcgcgatca aagaggtcga ctcgtcgttg cgtgttggtg
     3001 ggccggcgac ggcgcggagc gaatggattg aagactttgt agagttttgt gagcgaaaca
     3061 aagtgcctgc tgattttgtc accacacatc aatatccgac cgatggatac gacagagaag
     3121 gtgatacgga actccacctg ttcaagagcc agcgcgggat catgcgcgaa cgtgcgcagg
     3181 acacgcgcag gtacgctggc gagcgccctg tctactacac tgagtggaac tcttccgcaa
     3241 actcacgcga tccgttacac gatgaaccgt atgccgcggc atttgtggtc tcgacgatac
     3301 tggaagcgaa aggcttggtt gaagggtata gcttctggac gttcacagac attttcgaag
     3361 agcatgggtt tcaatctttg ccgtttcacg gcggctttgg tttgcttact gtgcacggta
     3421 ttgcgaaacc cgcctttcgc gcgtttgagt tgctgcatca gttgggcgat cggcagtcgc
     3481 ttgtcgacgg cttgcatgac accgtcgact gttctgtggt ccaaggcgag gcgagtgtga
     3541 acgttgtcct gacgaaccat acgacgccgg gacattccat tgaaactgaa cacctcgaaa
     3601 taaagctgga caacgcgcgt gaaccggtcg cggcgcacat ctggcgcatc gatgccgatc
     3661 acgccaatcc caaacgattg tgggaagaga tgggccggcc ggagcatttg cagtcgcggg
     3721 acgtggagca gttgcacgaa gcatcgcgtg tcgtgaag
//
LOCUS       DASWTX010000666         2825 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_419909, whole genome shotgun sequence.
ACCESSION   DASWTX010000666 DASWTX010000000
VERSION     DASWTX010000666.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2825
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_419909"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..485)
                     /locus_tag="VGD38_10200"
     CDS             complement(<1..485)
                     /locus_tag="VGD38_10200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728431.1"
                     /translation="MIKKLFAVAAATGLLLSLAGLTPAYNEDKYVNPEKPGQKIERSM
                     PVAPEALIRLCVASGTLTIHSWDKQEIRVRSVDAEQIEFRRIDKPKDPNAPATYVAVM
                     VWDKASRANPRMDCQAIADVEMVVPAGSAVQAQTHDGDIRIAGIAKAYAGSQNGDITI
                     ER"
     gene            complement(500..1369)
                     /locus_tag="VGD38_10205"
     CDS             complement(500..1369)
                     /locus_tag="VGD38_10205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728432.1"
                     /translation="MTRCLDEATLQTYFDGELSGEMMESATLHLASCSTCAAAAREME
                     EEINLMMTALAPEFEASVPTDRLRQRIDAAVLDLRVDAASSPERAGFGAFISSLLSFG
                     SQRSLGYAGLVVVLAFAAVFGLVKLKTDAPQTGNNPEGQVAVVPPKAETVESSAPVEG
                     INSETNDPIKVNRPTPPRFVPVKAPVNKTNSTPASEPVKLLPGERAYLQTIARLDSTI
                     KANKKSMRPSLQVEYERNLAVVDRAIAATRSAAKSNPNDPDAADFMFSAYQSKVDLLN
                     TIADARLGGGRSH"
     gene            complement(1366..1908)
                     /locus_tag="VGD38_10210"
     CDS             complement(1366..1908)
                     /locus_tag="VGD38_10210"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0728433.1"
                     /translation="MPNDIGTEAVGPLSFDEAFTLHHRAVFRTARAVVRDSALAEDVT
                     QEVFLRLYRNLHATPGEDLLRAWLLRVTLNVARNTLRGQSRSMVRDNEYHKSTADNGF
                     AVEAPEEDYERRVAIEEARRALDKVKEPMRSCLLLKQQGLSYREIANSLSLKETNVGS
                     LVARGRKEFARVYGKIGGRR"
     gene            2370..>2825
                     /locus_tag="VGD38_10215"
     CDS             2370..>2825
                     /locus_tag="VGD38_10215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728434.1"
                     /translation="MRVKSPKLFAGALMLGLLFCASSTAYADAFSLTTFSFNNVQFTP
                     SAGSAQFTASSTLARADAGINGGISISNSSTSFPFAQATALVNGMTASAIADANTNSV
                     SGTTTAFLGGCTCQGGAAAITMLNGTLVLSGAEGPVDVSISALRSFVWQV"
BASE COUNT          583 a          833 c          746 g          663 t
ORIGIN      
        1 cgctcgatcg tgatgtcgcc gttttgcgaa cccgcgtacg ccttcgcaat gccggcaatt
       61 ctaatatctc cgtcatgcgt ttgcgcttgc actgcggagc ctgccggcac gaccatctct
      121 acgtcggcaa tcgcctggca gtccattctt ggattcgcac gcgaagcctt gtcccaaacc
      181 atcacggcga cgtaggtggc cggcgcgttt gggtctttcg gcttgtcgat acgccgaaac
      241 tcgatctgtt cggcgtcgac ggaccggact cgaatttcct gtttgtccca gctatggatc
      301 gtcagggtgc cggaagcgac gcaaagccga attaacgctt cgggagcaac cggcatcgac
      361 cgttcgatct tttgacccgg tttttccggg ttgacgtatt tatcttcgtt gtaagcgggg
      421 gttaaacctg ccagggagag aaggaggccg gtagccgcgg cgactgcgaa caacttcttg
      481 atcaacttga ccgggccttt cagtgggagc gacctccacc gagacgagcg tcagcgatgg
      541 tgttgagtaa atctactttg ctttggtaag cggaaaacat gaaatcagcc gcgtccggat
      601 cgtttggatt gctcttggct gcgctgcgtg tggcagcgat ggcgcgatcg acaaccgcca
      661 gattgcgctc atactcaacc tgcaacgacg gtctcattga tttcttgttc gccttaattg
      721 tggagtccag tcgggcgatt gtttggagat aagcacgttc gcccgggaga agtttgactg
      781 gttcagacgc cggcgtggag tttgttttgt ttaccggagc tttgaccggc acaaaccttg
      841 gaggcgtggg tctgtttact ttgatcggat cgtttgtttc tgagtttatc ccttctactg
      901 gggcactgga ttcaaccgtc tcagctttag gaggcacaac tgccacctga ccttcaggat
      961 tgttacccgt ttgcggcgcg tcggttttca acttcaccaa accaaaaacc gcggcgaacg
     1021 ccagcaccac gaccaaaccc gcataaccca acgaacgttg cgaaccaaaa ctaagcagac
     1081 tcgagatgaa agcgccgaat cccgcgcgct caggtgacga tgccgcgtca acacgcagat
     1141 ccagaaccgc cgcgtcaata cgctgtcgca gccgatcggt cggcacgctg gcttcaaact
     1201 ccggcgccag cgccgtcatc atcaaattga tctcttcttc catttcgcgc gctgccgcag
     1261 cgcacgtgga acacgaagcc aggtgcaacg tcgcgctttc catcatttcg ccggaaagct
     1321 caccgtcgaa ataagtttgc agcgttgcct cgtccaaaca cctcgtcatc gtctgcctcc
     1381 gatctttccg tagaccctcg caaactcttt tcgcccgcgg gccaccaagc tgccgacgtt
     1441 ggtctctttc aacgacaggc tgttggcgat ctcgcggtac gaaagcccct gttgtttcag
     1501 caacaggcag ctcctcatcg gctcttttac cttgtctaaa gcccggcgag cttcttcgat
     1561 cgccacgcgg cgctcgtagt cctcttccgg agcctcgacg gcaaagccgt tgtcggcggt
     1621 gctcttgtga tactcgttat cgcgaaccat cgagcggctt tgaccgcgca aggtgtttcg
     1681 cgccacgtta agagtcacgc gcagaagcca cgcgcgaagc agatcttcgc ccggcgtagc
     1741 gtggagattg cgataaagtc gtaaaaatac ttcctgcgtc acgtcttcag ccagggcgga
     1801 gtcgcggacg acagccctgg ccgttctaaa aacggcgcgg tgatggaggg taaacgcttc
     1861 gtcgaaactg agcggaccta ccgcttcagt cccgatgtcg ttaggcatgg actcgatcaa
     1921 aactctagct tgtccgttca tcaatcaccg ctctctcaac agtgcaaaca ccacacacca
     1981 tagacttgtg gcaagtttct gccgggctgg gtcagttcct tgcaagtcaa cgggctacgt
     2041 ggattcggac ggagtcattg tagtcctgaa ctccgttttg taccaattat tgagagcggt
     2101 aacttgttgt aagtgtcaaa aacagctgac aggtttcgta acgtaacgac cgggatgaaa
     2161 gttcgcgtca ataccgatcg ctgtgacgaa aactacacct attgcccggt tttttttgtt
     2221 gctcctcctt atgttgcggg tgtataaggc tcgaaagtct ctctccagct ttacctgacc
     2281 cccgaaccac caccgacaag gtcggcaggt tcgacgagac cacccctatg cccagaacgc
     2341 tgtgtcctga ctgaacaagg aggaagttca tgagagttaa atcgcccaaa ctttttgccg
     2401 gtgccctgat gctcgggttg ttgttttgcg cctcctcaac cgcttacgca gacgccttct
     2461 cactcaccac gttcagcttt aacaacgtcc agttcacccc gtcggcggga agtgctcaat
     2521 tcacggcgag ctcgacgctg gctcgtgccg acgccggcat caacggggga atttcaatca
     2581 gcaacagctc gaccagcttt cctttcgctc aagccactgc actcgtgaat ggaatgaccg
     2641 cctccgcgat agcagatgca aacacgaatt ccgtcagcgg cacgaccaca gcctttctgg
     2701 gaggctgcac ttgtcagggg ggcgctgccg caataaccat gctcaacggc acactcgtcc
     2761 tcagcggcgc cgaaggcccc gttgatgtca gtatttccgc tctacgttcg ttcgtgtggc
     2821 aggta
//
LOCUS       DASWTX010000667         1807 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_337286, whole genome shotgun sequence.
ACCESSION   DASWTX010000667 DASWTX010000000
VERSION     DASWTX010000667.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1807)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337286"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            326..1741
                     /locus_tag="VGD38_10220"
     CDS             326..1741
                     /locus_tag="VGD38_10220"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY0728435.1"
                     /translation="MIDVLVIGGGPAGVVAALRAADQGARTTLVTRDGFGGMAANDGP
                     VPVRTLAHAARLIRNARELCRYGIVVGEPALDFPRLLTRVREVVNDVQANSTFRSQID
                     SLGVTVHENAGSARFIDPHTLETESGLRLTAAKTIICTGGVSRQLTVPGAELVATHSD
                     AWSLTCVPESILVLGGGATGAQVASVFNAFGSKIQLFHAGARILPTEDEDVSAAVATA
                     FRNSGVIVKENFGTIDSFEKTPAGVRMWFSKEGRRESAEASLVVCAIGWRANTTNLHL
                     ENAGVETDARGFISVDDFLRTSSGNIFAAGDVTGRMMLVPQAIQQGFVAATNAVRDSD
                     MKLDDRVAPVGSFTDPEYAQVGLTESKARERNDIATAKICFDSTTRTIIDGRTYGFCK
                     LIVDRQTRLILGCHVVGERAVDITQLAAIAMAAGMRVDDLARVPLSFPTYAGALGRVA
                     AKLTRDLNMTLEWQGTRGDVV"
BASE COUNT          380 a          512 c          574 g          341 t
ORIGIN      
        1 aggtgaggga ggaggcggag aaggtgtggc gaaggtgagg gaggaggcgg agaaggggtg
       61 gcgaaggtga gggaggagcc ggagaaggtg cggcgaaggc gtgaggtggg gggcggagaa
      121 cgcagttgcc ttgtgagtgg cacggctgtg ccgatggctt gtctcgcgag aggttctggg
      181 agttgttcca ggatcgcccg aagcggctct gccgccggat gtgaggcgag gctacgcctc
      241 gccggaagcg aaccctaaga accaaggggc tttgcccctg gtacggcctt tggcccacga
      301 tcctggggca gccagtagaa gagacatgat cgacgttttg gtaattggtg gcgggccggc
      361 gggagttgtt gcggcgctgc gcgcggcgga tcagggggcg aggacgacgc tggttacgcg
      421 cgatgggttt ggcggcatgg ccgctaatga tggaccagtg ccggtgcgca cgctcgcgca
      481 tgccgcgcgg ttgattcgaa atgcgcgcga gctttgccgc tacggaatcg tcgtcggcga
      541 acccgcgttg gattttccac ggctgttaac gcgcgtgcgt gaagtcgtaa acgacgttca
      601 ggcaaactcg acatttcgca gccagatcga ttccctcgga gtcaccgttc acgaaaacgc
      661 cgggagcgct cgattcatcg atccgcacac gctcgaaacc gaaagcggtc tgcggctcac
      721 agccgccaag acaataatct gcaccggcgg cgtcagccgc caactcacag tcccaggcgc
      781 agagctcgtc gcaactcaca gcgacgcgtg gagtttgacc tgcgttcccg aatcgatact
      841 cgttctcggc ggcggcgcga ccggtgcgca agtcgcgtcc gtcttcaacg cgttcggttc
      901 gaagattcaa ctcttccacg ccggcgcgcg catcctgccg actgaagacg aagacgtgtc
      961 agccgccgtt gcaaccgcct tccgcaattc aggcgtcata gtgaaggaga acttcggcac
     1021 gattgattca ttcgagaaga caccagccgg cgtcaggatg tggttttcaa aagagggaag
     1081 acgagaaagc gccgaagcga gtctggttgt ttgtgcgatc ggttggcgcg cgaacacaac
     1141 caacctgcat ctcgaaaacg ccggagtcga aaccgacgcg cgcggcttta ttagcgttga
     1201 cgattttctc agaacttcat caggcaatat tttcgccgcc ggcgacgtga ccggaagaat
     1261 gatgctcgtg ccacaagcga ttcaacaagg atttgtcgcg gccactaacg ccgttcgcga
     1321 ttcagacatg aagctcgacg atcgcgtcgc tccggtcggc agctttaccg atcctgaata
     1381 cgcgcaggtc ggcttaaccg agtcgaaggc acgcgaacgc aacgatattg caacggcaaa
     1441 gatctgcttc gattccacaa cacgcacgat catcgacggc cgcacgtacg gattctgcaa
     1501 actcatcgtc gatcgccaaa cacgtttgat tctcggttgt cacgttgtcg gcgaacgcgc
     1561 cgtggacatc acacagctcg cggcaatcgc gatggcagcg ggtatgcgcg tcgacgacct
     1621 cgcgcgagtg cctctttcat tccccactta cgccggcgcg cttggccgcg ttgcagccaa
     1681 actcacccgc gatctcaaca tgacactcga gtggcagggc acccgtggcg atgtagtgta
     1741 agagttcatc cgcggctcct gacgattgaa accttccagc catattcccg tcacaaaatt
     1801 ctagtta
//
LOCUS       DASWTX010000668         1744 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_268334, whole genome shotgun sequence.
ACCESSION   DASWTX010000668 DASWTX010000000
VERSION     DASWTX010000668.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268334"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..870
                     /locus_tag="VGD38_10225"
     CDS             <1..870
                     /locus_tag="VGD38_10225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728436.1"
                     /translation="WKISDALLPATCSQDHRTVPRHEQSVWDGSSLAGKRVLVRCYHG
                     LGDTIQFIRYADLLKRIAAQVIVWVQPSLIPLLRGVEGIDRLLPLHDGAPEVEYDVDV
                     ELNELPYVFRTTIDNIPADVPYLHVGPAPLPSTHDQIRLGLIWQSGDWDASRSIPFPV
                     LRPLSQLPDIEWHILQRDPHLAGWNGDFGVLSGGDNPLDDARIMGALDLVISVDTMTA
                     HLSGALGQQTWTLLPFNADWRWMKDREDSPWYPTMRLFRQKREGDWAGVIDEVTKSIA
                     LNRPQSVAARQDL"
     gene            complement(812..>1744)
                     /locus_tag="VGD38_10230"
     CDS             complement(812..>1744)
                     /locus_tag="VGD38_10230"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY0728437.1"
                     /translation="AECGLPLSLPGAAHPYYESQYQASLPTVRLYDLDPLIGHVIDGK
                     YELTAKLGEGGMSVVYRSRRVHIGDDVAVKILLGKFVKDDAALARFRREARAAAMLRH
                     PNVITIHDFGETDDDKAPAYIVMEFVKGTPLRDLLKSENRFSVERAVRLMRGICAGVS
                     AAHRQGVVHRDLKPENILVVAPEDDFEFESVRVVDFGLAKLLADAEAGPAGTVVGTPY
                     YMSPEQGMGEPLDTRSDVYSLGAMFYEMLSGIRPFDGETVSGVINRHLYEAPKPLPAS
                     LGIPRRMSTAIMQALAKDPDERPQTAGDLARLIL"
BASE COUNT          360 a          525 c          491 g          368 t
ORIGIN      
        1 tggaagatca gcgacgcgtt gttgccggcg acatgctcgc aggatcatcg cacggtgccg
       61 cggcacgagc agagtgtctg ggatggaagt tcactcgcgg gaaaacgtgt gttggtgcgt
      121 tgttatcacg gcctcggcga cacgattcag ttcattcgct atgcggattt gttgaaaaga
      181 atcgcggcgc aggtgatcgt ttgggtgcaa ccttctttga tccctctgct gcgcggtgtt
      241 gaaggaatcg atcgactgct gccattgcac gatggcgcgc cggaagttga atacgacgtc
      301 gacgttgagc tcaacgagtt gccgtacgtg tttcgcacaa cgatcgacaa cattcctgct
      361 gacgttcctt acctgcacgt cggtccggcg ccgcttcctt caacacacga tcaaatacgg
      421 cttggtttaa tctggcagtc gggcgactgg gacgcgtcgc gctcgatccc tttcccggtt
      481 ttacgtccgc tttcccaact tcccgatatt gagtggcaca ttctgcaacg cgacccacat
      541 ctcgctggct ggaacggtga cttcggcgtt ctttccggtg gcgacaatcc gctcgacgac
      601 gcgcgcatca tgggtgcact cgatctcgtg atctcagtcg acacgatgac ggcgcacctt
      661 tccggcgcgc tcggtcaaca aacctggacg ctgctgccgt tcaacgccga ctggcgctgg
      721 atgaaagatc gcgaagacag tccctggtat ccgacgatgc gtctgtttcg acaaaaacgg
      781 gaaggggatt gggccggagt aattgacgag gttacaaaat caatcgcgct aaatcgcccg
      841 cagtctgtgg ccgctcgtca ggatctttag cgagcgcctg catgatggcc gtcgacatcc
      901 gccgcggaat tccgagcgac gcgggcaacg gctttggtgc ttcatacaag tggcggttga
      961 tcacacccga aaccgtttca ccatcgaacg gccgtatgcc ggacagcatc tcgtagaaca
     1021 tcgcgccgag actgtaaaca tccgaacgcg tgtcgagtgg ttcgcccatg ccttgttccg
     1081 gcgacatgta ataaggagtg ccgaccacgg tcccggctgg accagcctct gcatcggcca
     1141 gcagtttcgc caaaccaaaa tcgacgaccc gcacgctttc aaactcgaaa tcatcctcag
     1201 gcgccacgac gagtatgttc tcgggtttca gatcgcgatg aaccacgccc tgtcgatgcg
     1261 ccgcactcac gcccgcgcag atcccgcgca tcaaacgcac cgcacgttca accgagaaac
     1321 ggttttcgct cttcagcaga tcgcgcaacg gcgtgccttt gacaaattcc atcacgatgt
     1381 aagccggcgc tttgtcgtcg tcagtctcgc cgaagtcgtg aatggtgatg acgttcggat
     1441 ggcgcaacat cgccgccgca cgcgcctcac gacgaaagcg cgcgagtgcc gcgtcatctt
     1501 taacaaactt gccaagtaaa atttttaccg cgacgtcgtc gccgatgtgc acgcggcgcg
     1561 aacgatacac gacgctcatc ccgccttcgc ccagctttgc ggtcagttcg tacttgccgt
     1621 cgatgacgtg accgatcagc ggatcgagat cgtaaagacg aaccgtgggc agtgaagcct
     1681 gatactggct ttcgtagtac ggatgcgccg cgccgggcag gctcaacggc agaccacact
     1741 cggc
//
LOCUS       DASWTX010000669         2439 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_268353, whole genome shotgun sequence.
ACCESSION   DASWTX010000669 DASWTX010000000
VERSION     DASWTX010000669.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2439)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2439)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2439
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268353"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..385
                     /locus_tag="VGD38_10235"
     CDS             <1..385
                     /locus_tag="VGD38_10235"
                     /inference="COORDINATES: protein motif:HMM:NF012610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEY0728438.1"
                     /translation="MYVTVDERDARPLYQQLVDEIKTLIARGELTEGTLLPPVRQVAS
                     DLGVNLNTVAFAYRRLQNEGLIRVRHGSGAVVISQTLKDKPDERLRAQLRTALTQLIL
                     AGLKQPEIKSLINEELEELLKESRR"
     gene            complement(393..1499)
                     /locus_tag="VGD38_10240"
     CDS             complement(393..1499)
                     /locus_tag="VGD38_10240"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR family protein"
                     /protein_id="HEY0728439.1"
                     /translation="MRKRFYLPPISILSVALILCCSIVSFAQNREKFVISAKAGGINA
                     ITGGASVSSRGGDSGWDQLMITDDLNSGDRVRTAYDGRVEILLNPGSYLRLGGNSEVE
                     LLDNSLANLEVRLLRGTAIVEATGADGLELNIGISTPHTRLAIVRQGLYRLNVVPEDA
                     TELIVRKGRVILSDSHTKVKGGNKVVFSATNVSVAKLNDQEKKVKDDVEVWSKDRAKT
                     LAQANSRITNRMLTSALTSYNGFSSQWPNRSLGVWFYNARSGCYTFLPFFYGFGSPYG
                     GSYGTSIYYPPAYTGGYNPPAGGASGGGQPYPGGGGGNAGGGRPAAPTPPSGGGFGNG
                     GSGGGFGGREPRMINPETGNPMPRKNLEKMPGQP"
     gene            complement(1588..>2439)
                     /locus_tag="VGD38_10245"
     CDS             complement(1588..>2439)
                     /locus_tag="VGD38_10245"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0728440.1"
                     /translation="SVLGFAPNAPAPLLKQEDFRVLEDGVPQEILFFAAADAPFDLVL
                     LLDLSGSNSKNLKMIRNSAKRFVDAARDVDRIALVTFTDRPALYSSFTLDRRKLKKSI
                     DDMDEAIGGTNFWDSLDYVVRDLIGSGGGLRRSAVVVMTDGVDNALPDVPGPGSRTPF
                     EKLLDSIRQSESIIFPIYLDTEEQNVKRFHVPRAAYAQARDQLGQLASLCGTTLYRAA
                     KLKDLDSVYAQVVRDLSTVYSIGYRPSNKSLDGKWRTVEIQLNNRPDLLARTKRGYQA
                     KLIEPSQ"
BASE COUNT          504 a          702 c          729 g          504 t
ORIGIN      
        1 tatgtacgtt accgtagacg aacgcgacgc acggccactt tatcagcagc tggttgatga
       61 gattaagacc ctgattgcgc gaggtgagct cacggaaggg acgcttctgc ctccggtgcg
      121 gcaggtcgcg tcggacctcg gggtgaacct caataccgtc gcttttgctt atcgaaggct
      181 gcagaacgag gggttgatcc gcgtgcggca cggttcgggc gcggtcgtca tctcgcagac
      241 actcaaagac aagccggacg aacgcttgcg ggcgcagttg aggacggcgt tgacgcagtt
      301 gatccttgcc ggactaaaac agccggagat caagtctctc atcaatgaag agttggaaga
      361 attgctgaag gaaagccggc gttagccgct gattacggct ggcccggcat cttttccagg
      421 ttcttgcgcg gcatcggatt gccagtctcg ggattgatca tccgcggttc cctgccccca
      481 aatccgccgc cgctgccgcc gttaccaaaa ccgccgccag acggcggagt cggagctgct
      541 ggccggccac cgccggcatt gccaccgcca ccaccgggat acggctgacc gccgccgctc
      601 gcaccacctg caggcgggtt ataaccgcct gtgtaagccg gtgggtaata gatcgacgtg
      661 ccataggaac cgccgtatgg cgagccgaag ccgtaaaaga acggcaggaa ggtgtaacaa
      721 ccgctgcggg cgttatagaa ccacacaccc aagctgcggt tcggccactg agaactgaaa
      781 ccgttgtagg aagtcagtgc ggaggtcagc atccggttag tgatgcggct gtttgcctgc
      841 gccagcgtct tcgcccggtc tttgctccaa acctcgacgt cgtctttgac cttcttttcc
      901 tggtcgttca gtttggcgac cgacacgttg gtggcgctga aaacgacctt gtttccgccc
      961 ttaaccttcg tgtgcgagtc gctcagaatc acgcggcctt tgcgaacgat cagctccgtc
     1021 gcgtcttccg gcaccacatt caggcgataa agtccctgcc gaacgatagc cagacgcgtg
     1081 tgcggcgtgc tgatgccgat gttcagctcg agtccgtccg cgccggtggc ttcgacgatg
     1141 gccgtgccgc gcaacaggcg aacttcgaga tttgcgagcg agttgtcgag gagttcgact
     1201 tccgaattgc cgccgagacg cagatacgaa cccggattga gaagaatttc gacccgcccg
     1261 tcatacgcgg tgcgaacgcg gtcgccggag ttcagatcgt ccgtgatcat tagctgatcc
     1321 caaccagagt cgccgccgcg tgagctcacg gacgcgccgc ctgtgatggc gttaatcccg
     1381 ccggctttgg ccgaaataac aaacttttcg cggttttgag caaagctcac aatcgaacaa
     1441 cagagtatga gtgcgactga gagaatagag atcggcggga ggtaaaaacg ttttctcacg
     1501 gaaagatcct ccgaaattga gattgtttag ggggtcggcc ggtaatctcg cgagcattat
     1561 agtcctacgc agactattta caagctttta ctggctgggt tcgatgagtt tggcctggta
     1621 gccgcgtttt gttctggcga gaagatcggg acggttgttg agttggattt cgaccgttcg
     1681 ccatttgccg tcgagtgact tgttcgacgg gcggtagccg atgctgtaaa cggtgctgag
     1741 atcgcgcacc acctgcgcgt agaccgaatc gagatctttt agcttcgcgg cgcgatagag
     1801 cgtcgtcccg caaagcgaag cgagttggcc caactgatcg cgagcctgcg cgtaagcggc
     1861 acgcggcacg tgaaaacgct tcacgttctg ttcttccgtg tcgagataga tcgggaagat
     1921 gatgctctcc gactggcgaa tgctgtcgag cagcttttca aacggcgttc tcgaacccgg
     1981 cccaggcaca tctggcaaag cgttatcaac accgtccgtc atcaccacca cggcactgcg
     2041 ccgcaagccg ccgccgcttc cgatcagatc ccgcaccacg taatcgagcg agtcccaaaa
     2101 attcgtgcct ccgatcgctt cgtccatgtc gtcgatactc ttcttcaact tgcgtcgatc
     2161 gagagtgaac gacgaataga gcgcgggccg atcggtgaag gtcacgagcg cgatgcgatc
     2221 gacgtcgcgc gccgcgtcga cgaagcgttt cgccgagttg cgaatcatct tcaggttctt
     2281 ggaatttgag ccggaaagat cgagcagcag cacgagatca aatggcgcgt cggccgcggc
     2341 aaagaacagg atctcctgcg gcacgccgtc ttcgagcacg cgaaagtctt cttgtttgag
     2401 caacggcgcg ggcgcgttcg gcgcgaaccc gagcacact
//
LOCUS       DASWTX010000670         1632 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_137780, whole genome shotgun sequence.
ACCESSION   DASWTX010000670 DASWTX010000000
VERSION     DASWTX010000670.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137780"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(543..>1632)
                     /locus_tag="VGD38_10250"
     CDS             complement(543..>1632)
                     /locus_tag="VGD38_10250"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEY0728441.1"
                     /translation="APLAAAIMFALMATCLVNLVLFGVTGRGFSQFLLFLALSPMIAS
                     LLLVTVLGGLLGSAMHVVWGLLTPLGALVVYGPKRARLCFVAYVGVLGLGTLLSHTIA
                     APINVLDRGALAAVMGLNIIGVSAFAFGILHYFVRAREIALALVRSERERSEALLLNI
                     LPKDIASILKNESRTIADHFEGASILFADVVDFTPMSQKMSPTELIDLLNELFSHFDD
                     LVEKYGVEKIKTIGDCYMVASGVPRPRPDHAHVLARLALEMRAFVSQRTFGAHTVSLR
                     IGINSGSVVAGVIGRKKFIYDLWGDAVNTASRMESHGGNGIIQITRATYELIKDDFVC
                     EPRGAVYVKGKGEMEAWQIKGPETVETG"
BASE COUNT          369 a          466 c          496 g          301 t
ORIGIN      
        1 atccatacgg cagtccgagc gtcggcggga gatcaaggcc ggtcatccac ttcgacgacg
       61 agttgagatc cgatcgcttc gaacgaaagc agcgagcggt catggctcgt tacatctcga
      121 tgcaccggca acgctgagcg cggtgatcgt ttcttccgaa cgacgccgac gccgtgtagc
      181 agggaatatt gtcctcgaaa tcggaaaggt acaaagaacc tttctcaccg acgagacgtg
      241 ttctcaggac gatgccggga ggaccaactc ctgggcgcaa tgctcgacaa tgcggtttcg
      301 acgatcaagg atcagggtgc aaatgccgaa aagcgagggc gctcgcaact aaccagcagc
      361 ggcccgcctg cttcgataat tcgcggtcga tacggggccg aatggccgct agtcgggaaa
      421 gcggatgagt gaagcgggct tgtagtcgat tctctccgca cgttactccc gtggatcgtt
      481 cgcttcatct ctgtaccagg tttctgtacc aggttgatca accgtggtac gagatcccgc
      541 gcttagcctg tctcaactgt ttcaggtccc ttgatctgcc aggcttccat ctcccctttg
      601 cctttcacgt acacggcgcc gcgcggttcg catacgaaat catccttgat gagctcgtag
      661 gtggcgcgcg tgatctgaat gatgccgttg ccgccgtggg actccatgcg gctggcagta
      721 tttacggcgt cgccccaaag atcgtaaatg aatttcttgc ggccgatgac gcccgccacc
      781 acggatccgg agttgatgcc gatccgcagg ctgactgtgt gcgcgccgaa ggttcgctgg
      841 ctcacgaagg cacgcatctc caacgctaga cgcgcgagca cgtgggcgtg atcgggacga
      901 ggacgaggga cgccgctggc aaccatatag cagtcgccga tcgttttgat cttctccacg
      961 ccgtatttct ccaccaaatc atcgaagtga gaaaagagct cgttcagcag atcgatcagc
     1021 tcggtcggag acatcttctg cgacatgggc gtaaaatcga caacatcggc gaaaagaata
     1081 cttgcgcctt cgaagtgatc ggcgatggtt cgcgattcat tcttcagaat cgaggcaata
     1141 tctttaggca gtatgttgag cagcagcgcc tcggatcgct ccctttcgct gcgcacgagg
     1201 gcgagcgcga tctcgcgcgc gcggacgaag tagtggagga tgccgaaagc gaacgccgat
     1261 acgccgataa tgttcaggcc catgacagcg gcaagggcgc cgcgatcgag cacgttgatt
     1321 ggggcggcga tggtgtggga caggagcgtg cccagaccga ggacgccgac gtatgcgacg
     1381 aaacagagtc gcgcgcgttt cggtccataa accaccagcg cgccaagcgg ggtcaacaat
     1441 ccccagacca catgcatggc ggagcccagc aggccgccca aaacggtcac cagcaggaga
     1501 gatgcgatca tcggcgagag agcgagaaac agcagaaact gcgagaagcc gcggccggtc
     1561 acgccgaaca aaacaaggtt gaccaggcaa gtggccatga gagcgaacat gatcgccgcg
     1621 gccagcggcg cg
//
LOCUS       DASWTX010000671         4184 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_380683, whole genome shotgun sequence.
ACCESSION   DASWTX010000671 DASWTX010000000
VERSION     DASWTX010000671.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4184
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_380683"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..759)
                     /locus_tag="VGD38_10255"
     CDS             complement(<1..759)
                     /locus_tag="VGD38_10255"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0728442.1"
                     /translation="MLLKRPSLTIVAVVAIALGIGANTAIFSVVNTVLLQPLPYEQPE
                     QLVNLASELRNQALDGRGTFSVPDFLDIQEQSKTLEYVAVQQQTGTITTEGGEPERLI
                     GVAVTADYFPLLRVKPVLGRVFTRDEDKPGGPQVIVISYALWQRRYGGDPNIIGREVD
                     LGGKTTVVGVLPAGFKYPISDDPQDYWEPLFSATFLTKEAREERANHFLSVFGRMKPG
                     VTVEQTKAELDLLSRQIEQQYPRSNTNVMFNATSM"
     gene            complement(814..2013)
                     /locus_tag="VGD38_10260"
     CDS             complement(814..2013)
                     /locus_tag="VGD38_10260"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIIE family protein phosphatase"
                     /protein_id="HEY0728443.1"
                     /translation="MISLHSTVAPVPLIPQPPRTLVADDDADILTALRLLLANDGYEL
                     ETVSSPAALLAAIERSQFDVVLMDLNYARDTTSGREGIDLISRVHALDPSLPIVVMTG
                     WATVDLAVEALRRGVRDVVQKPWDNSRLLQTLHKQVRHARARRNVQLRLAETRKTEAQ
                     FKRELIEARELQENLLANTTSEIAGLDVAAKWQPAKTVGGDYIAAFNLDDEHAALCVA
                     DVVGKGLPAALLMSNFQAALKSLASDHFSPADVSTRLNDLLYANIPLHKFITAFYAVV
                     NVPDRTLTFTNAGHNPPLLVRENGECVRLEAGGSVLGAFPNTPFAEEQIQLQHGYRLL
                     LFTDGLTEAVDEYGEQFGEERLMDLLQQHRHETADDLKEIIFNVVEEFCGCSFRDDAA
                     LMVISID"
     gene            complement(2254..2329)
                     /locus_tag="VGD38_10265"
     tRNA            complement(2254..2329)
                     /locus_tag="VGD38_10265"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2294..2296),aa:Ala,seq:ggc)
     gene            complement(2643..4025)
                     /locus_tag="VGD38_10270"
     CDS             complement(2643..4025)
                     /locus_tag="VGD38_10270"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEY0728444.1"
                     /translation="MSEAEIGVSIVILGIFLLAAHAFGYVFERLSQPRLIGEILAGVV
                     LGPFVLGKIASPGFTFLFTNPSLGADKTGLVLSLAYWLGLLLLMFISGSEVQGLLSTS
                     NRHETAWLLGIGTPLPFAFVMIIGLLGAIPMDSLIGVHGTKTSTLLVLASAAAVTSIP
                     VISRIFKDLGILHTRFASLILGTAMLEDVGLWGVLAIAIAMSDRTSVVGGLIASNSYH
                     VAVTVIYIGFAMLVVPRLLKRIWRFDDSAVSQHSLVAYAIALLCFFVGVAAGFGVSTV
                     FAAFLAGYALINGVRHREKSELNAALHSIQSVAFGVFVPIYFAIVGYRLSFGNDFSVG
                     MLLTFLLGSSLIVLMSVGLAAKLAGFRGLDIVNLAITANARGGPGIVLASIAFDAGLI
                     SGALCTTLVISALFTSQMAGWWLRFVLRRGWPLLSTNPEEKAADFRLSPASRPLLTPE
                     FDFPQGESRG"
BASE COUNT          993 a         1119 c         1193 g          879 t
ORIGIN      
        1 catcgacgtc gcgttgaaca ttacgtttgt gttcgaccgt gggtattgct gttcgatctg
       61 acgggaaagc agatcgagtt ccgctttggt ctgttcgaca gtcacaccgg gtttcatccg
      121 gccgaacacc gaaagaaagt ggttggcgcg ttcttcacgc gcttccttgg tcaggaaagt
      181 cgcggagaag agcggctccc aatagtcttg cggatcgtcg ctgatcggat acttgaaacc
      241 cgccggcaac acgccgacga cggttgtctt gccgccgaga tcgacttcac ggccgatgat
      301 gtttggatcg ccgccgtagc gccgctgcca cagtgcatag ctgatcacga tgacctgtgg
      361 cccgccgggc ttgtcttcgt cgcgcgtgaa gacgcggcca agtacgggct tcacacgcag
      421 gagcggaaag tagtcggctg tgaccgctac gccgatcaaa cgttcaggct cgccgccttc
      481 ggtcgtgatc gtgccggtct gttgttgcac ggcgacgtac tcgagtgttt tcgattgctc
      541 ttggatgtca agaaagtcgg gcactgagaa cgtgccgcgg ccgtcgagcg cttggttgcg
      601 cagttcgctg gcgaggttca cgagttgttc cggctgttcg tatggaagcg gttgcagcag
      661 gaccgtgtta acgacggaga agatggcggt gttggcgccg atgccgagtg cgatggccac
      721 gactgcgacg atcgtcaggc tcggccgctt gagcagcatt cgaagagagt aggttaagtt
      781 tttccaaagg gcgtccattt attccaatct ccgtcagtcg atgcttatca ccatgagcgc
      841 cgcatcgtcg cgaaacgagc acccgcaaaa ctcttccaca acgttgaaaa taatctcttt
      901 caagtcgtca gcggtttcgt gacggtgctg ctgtaacaag tccatcaaac gttcctcgcc
      961 aaactgttcg ccgtattcgt caacggcttc ggttagacca tcggtgaaga gcaacaaccg
     1021 atagccgtgt tgcagttgaa tctgttcttc ggcgaaaggt gtgtttggaa acgcgccgag
     1081 aacgctgccg cccgcttcga gtcgaacaca ctcgccattc tcacgcacga ggagcggcgg
     1141 attgtggccg gcgttggtga atgtcagcgt gcgatcggga acattcacga ccgcgtagaa
     1201 cgcggtgatg aacttgtgca gcggaatgtt tgcgtagagc agatcgttga gacgcgtgct
     1261 cacgtccgcg ggagaaaaat gatcggaagc cagcgacttc aacgccgcct ggaaattcga
     1321 catcaacaac gcagccggca accccttgcc aacaacgtcc gcgacgcaca aggcagcatg
     1381 ctcgtcgtcg agattaaaag ccgcgatgta atcaccaccg acggttttgg ccggttgcca
     1441 tttcgcagcg acgtcgaggc ccgcgatttc cgaagttgtg tttgcgagta agttttcctg
     1501 aagctcgcgc gcttcgatca actcgcgttt gaattgcgct tctgtctttc gtgtctcggc
     1561 gaggcgaagc tgcacgtttc tgcgcgcgcg cgcatgcctg acctgcttgt gcaacgtttg
     1621 cagcagacgc gagttgtccc acggcttctg cacaacatca cgaacgccgc ggcgcagtgc
     1681 ttcgacggcg agatcgaccg tcgcccaacc cgtcatgacc acgatcggaa gcgacggatc
     1741 gagtgcgtga actctcgaga tcagatcgat gccttcgcgc ccgctcgtcg tgtcgcgcgc
     1801 gtagttgaga tccatcagca cgacatcgaa ttgcgaacgc tcgatcgccg cgagcaacgc
     1861 cgcgggcgac gacacggtct ccaattcgta accatcgttt gcgagcagga gtcgcagggc
     1921 agtgaggatg tccgcgtcgt catccgcgac gagcgttcgc ggcggttggg ggattagggg
     1981 aacgggtgcg actgtagagt gcagggatat cacgggagtt caccagtggt tattaaatta
     2041 atcagcttca gttacgagat ttcgtagtac gtgcgagagc agcgcgctgc gaacgatgca
     2101 gagatcgtgc cgttaggttt tgcgagttaa tttgaggaaa gcgagggttt gcggagtggt
     2161 tttgatttca gaagtgagat tgcccgatcc cattttcgtg caaggtgctt cttatgggtc
     2221 gacgttacgg cgttcgttga ttctggagtg gattggtgga gccgaggggg atcgaacccc
     2281 tgacctcatg actgccagtc atgcgctctc ccagctgagc tacggcccca acgtgcgtgg
     2341 gtgttcatta aaatgaacag acgcagacta gcctagcgtt ttgcattgag tcaagcaacg
     2401 gcgtgatttt gcgtcgttgc atttactctt gtggccaaat tgtggccacg cgaactcagc
     2461 gtcgctgctt gaacagggca atgatcagaa aagaaggcgg gtactatggc gactccgact
     2521 ctgccatcgc actgttggtg gaggtgcaaa gggtgtttcg gagactagga ggtcctggat
     2581 ggggtttgat taggagggtc taactgaaga tggtgaagga atgcacgtga tccggatgaa
     2641 tactaacctc gactttcacc ttgtgggaaa tcgaactcgg gggttagcag agggcggctt
     2701 gccggtgaca acctgaagtc agcagccttt tcctcggggt tcgtcgaaag caacggccaa
     2761 ccgcggcgca gtacgaaccg caaccaccaa cccgccattt gagaggtaaa aagcgccgag
     2821 atgacgaggg tggtacaaag cgctccgcta atcagtcccg catcgaacgc aatgctggcc
     2881 aaaacaattc caggcccacc tctcgcgtta gccgtgatcg ccaaattgac gatgtccaaa
     2941 cctcggaacc cagcgagttt agccgcaagg ccgacggaca taagcactat gagagatgat
     3001 cccaacaaaa aggttaagag catgccaacc gagaagtcgt taccaaaact caatcgataa
     3061 cccacgattg caaaatagat cgggacaaac acaccaaaag caactgactg aatggagtgc
     3121 agggcggcgt tcagttcaga cttctccctg tgccgaactc cgttaattag tgcataacca
     3181 gccaggaacg cggcgaaaac ggtactaaca ccgaagcctg cggcgacccc gacgaaaaag
     3241 caaaggagtg caatcgcata ggcgacaagc gaatgctgcg acactgcgct atcgtcaaaa
     3301 cgccatatcc ttttgagaag ccgtggaaca accagcatgg caaacccaat gtagataaca
     3361 gtgaccgcaa cgtgatagct attgcttgct atcaaaccgc cgacaacaga cgtgcgatcg
     3421 ctcattgcga tggcgattgc caacactccc cacaaaccga catcttcgag catggcagtt
     3481 ccgaggatca ggcttgcaaa gcgagtgtga agtattccga ggtctttaaa gatgcgggaa
     3541 atcacgggga tcgacgttac tgctgccgcg ctggccagca ccaacaaagt cgacgttttc
     3601 gttccgtgca caccgatcag cgaatccatg ggaattgcgc cgagcaagcc aatgatcata
     3661 acgaaggcaa acggcaacgg cgttccaatt ccaagcagcc acgctgtttc gtgccggttt
     3721 gacgttgata gcagaccttg cacttcgctc ccggaaataa acatgagcaa cagtaggccc
     3781 aaccagtaag ccaaagaaag cacaagtccc gttttgtctg cgccgagact gggattcgtg
     3841 aagagaaacg taaatcccgg cgaagcgatc ttccccagta cgaacggacc taagactact
     3901 cccgccagaa tctctccaat caacctcggc tgcgaaagac gctcaaaaac atatccaaag
     3961 gcgtgcgcag ccaaaaggaa tatgccaagg attacaatcg aaacaccaat ttctgcctcg
     4021 gacattggta caacctttaa tcaagaatga agcacaagct gaaagagacc gttttttcgt
     4081 gctggagact gtttcagaaa actctgcgag gtcgagatgt tggcggcctg gcttctagcc
     4141 ggcctcttcg cggaccgccg cgccaagatt ttgcatcaac ggcg
//
LOCUS       DASWTX010000672         3298 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_359711, whole genome shotgun sequence.
ACCESSION   DASWTX010000672 DASWTX010000000
VERSION     DASWTX010000672.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3298
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_359711"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(29..460)
                     /locus_tag="VGD38_10275"
     CDS             complement(29..460)
                     /locus_tag="VGD38_10275"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0728445.1"
                     /translation="MNHSSTQGVSSMNDSVSAILYPTVLLAEDSEDTRAMLKRAFELK
                     GYQVLEAEDGQEALEMARRHRPSLIVIDLNMPVLDGLETVKNLRETEGPGEEIPIVAI
                     TAYDVPGMEDAALETGCNRYLRKPLDLSELDRALKSFGFIV"
     gene            531..1811
                     /gene="aroA"
                     /locus_tag="VGD38_10280"
     CDS             531..1811
                     /gene="aroA"
                     /locus_tag="VGD38_10280"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR01356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003866 - 3-phosphoshikimate
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEY0728446.1"
                     /translation="MKLAPAQGLKGRLRLPGDKSISHRAALIAALADGASEITNFSTA
                     RDCASTLACLRELGVAIERDGEKLRFRGSQKLVSPRGPLYCGNSGSTMRILAGVLAGH
                     DLSAELIGDESLSTRPMRRIIEPLELMGARIEATDGKPPLRIRGSGNPRAIEYKLPVA
                     SAQVKSAILFAGLNAAGRTTVIETSPTRDHTERLFNGFGVPVTVDDSSIRLDGPARFT
                     GGSITIPGDISSAAFFVAAAMLLPGSELVIENVGLNPTRTAFLSVLSSWGADITTTDF
                     RMERNEPVGTITVRGGIGEADGDRVLAGDQIPLLIDELPLLAVVGTGIKGGIEIRDAV
                     ELRHKESDRLAATARNLLAMGAEVEELADGLRVNGPTKLRGAAIDSYNDHRIAMAFSV
                     AALIADGVTEIHGSESAAVSFPEFFELLDSLVQR"
     gene            1808..2314
                     /locus_tag="VGD38_10285"
     CDS             1808..2314
                     /locus_tag="VGD38_10285"
                     /inference="COORDINATES: protein motif:HMM:NF013375.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEY0728447.1"
                     /translation="MNSGPIVIVGFMGCGKTAVAHALARKFNLPMVDLDRTIAKQHGR
                     TAAQLIREDGEPAFRAIETKALHQLLEAGRRGVIALGGGAWITDVNRKLIDQYSCTSV
                     WLDTPFELCWRRIEASEEDRPLGRTREQAEQLYRARKPVYQQATIRVPVTADQPVESI
                     VARLVDAI"
     gene            complement(2321..3163)
                     /locus_tag="VGD38_10290"
     CDS             complement(2321..3163)
                     /locus_tag="VGD38_10290"
                     /EC_number="1.14.16.1"
                     /inference="COORDINATES: protein motif:HMM:NF012571.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine 4-monooxygenase"
                     /protein_id="HEY0728448.1"
                     /translation="MTPLETKPVLLDHVEVRIIELDPDHPGFRDPEYRARRNAIADIA
                     MSYRPGQPIPHAPYTQQEHDVWRTIWTALGPAHREHACAEYRDCLAKLNFDTDRIPQL
                     DEVSRKVEAISGFQLEPVAGLVEPRVFLESLARGVFLCTQYIRHHSTPLYTPEPDVVH
                     EIIGHAVTLASPRFAELNRMFGEAVRRTKSEEQLDRLARVYWFTIEFGVLRENGQIKA
                     YGTGLLSSAGELAEMHKAELRPLDLEAAANHVYDPTHYQAILFCAESFDEMDRSLRSF
                     LTRW"
BASE COUNT          687 a          983 c          954 g          674 t
ORIGIN      
        1 aggtcctatt gagatccgct cgcgggtctc acacgataaa cccgaaactc ttgagcgcgc
       61 ggtcgagttc ggacaaatcc aggggcttgc gcagatagcg gttgcagccg gtttcgaggg
      121 ctgcgtcttc cattccgggc acgtcgtagg ccgttatcgc cacgatcggg atttcctcgc
      181 ccggtccttc ggtttcgcgg aggtttttga ctgtttccag accatcgagc accggcatgt
      241 tgagatcgat aacgatcaga ctcgggcggt ggcggcgcgc catctcgagc gcttcctgcc
      301 cgtcttcggc ttcaagcacc tggtagcctt tcaactcgaa cgcgcgtttg agcatggccc
      361 gagtgtcctc ggaatcttcc gcgagcaaaa cagtcggata aagtatggcc gaaacagagt
      421 cgttcatcga gcttacgccc tgagtgctgc tatgattcat ttttcataag ggggaaccgc
      481 ttaaagggga atcccaaagg gaactaagcg gatgccccta tttataccac atgaaactag
      541 ccccagcaca aggacttaag ggcaggctgc gtctgccggg tgacaaatcg atttcgcacc
      601 gggccgcact gatcgcggcg ctcgcggatg gtgcgtcgga gatcacaaac ttttccaccg
      661 cgcgtgattg tgcgtcgacg ctggcgtgtt tgcgcgagct tggggttgcg atcgagcgcg
      721 acggtgaaaa gctgcggttt cgtgggtcgc agaaacttgt ttcgccgcgt ggaccgttgt
      781 actgcggcaa cagtggctcg acgatgcgaa tactcgcggg agttttggcg ggtcacgatc
      841 tgagcgctga gttgattggg gatgaatctt taagcactcg gcccatgcgc cgcattattg
      901 agccgctgga attgatgggc gcgcgtatcg aagctactga cggtaaaccg ccgcttcgaa
      961 ttcgcggttc cggcaacccg cgcgcgatcg agtacaaact gccggtggcg agcgcgcaag
     1021 tgaagtctgc gatacttttt gcggggctaa atgccgcggg tcgcacgacg gttatcgaaa
     1081 catcgcctac acgcgatcac accgaacgtc tctttaatgg cttcggcgtc ccggtcacgg
     1141 tagatgattc ttcaattagg cttgacggtc cggcgcgttt caccggcggg tcaatcacga
     1201 tccccggcga tatttcttca gcggcgtttt tcgtcgcggc agcaatgctg ttgccgggtt
     1261 cggagttggt tattgaaaac gtcggactca atcccactcg caccgcgttt ctttcggttc
     1321 tcagttcatg gggcgctgac atcacgacta cagacttccg tatggaacgt aacgaaccag
     1381 tgggcacgat caccgtgcgt ggtggaatcg gcgaagcaga cggagatcga gttctggctg
     1441 gagatcaaat accgttacta atcgacgagt tacctttgct cgcggttgta gggacaggga
     1501 taaaaggcgg gattgaaatc cgcgacgcgg ttgagttgcg ccacaaagaa agcgatcggc
     1561 tcgcagccac cgcccgcaac ctgctcgcga tgggcgcgga ggttgaggag ctagcggacg
     1621 gtttgcgcgt caatggccca acgaaactgc gcggcgctgc gatcgattct tacaacgacc
     1681 atcgcatcgc aatggccttc tccgtcgccg cactcatcgc cgacggcgtc accgaaatcc
     1741 acggctctga atctgccgcc gtttccttcc ccgagttctt cgaactactc gactcactgg
     1801 tccaaagatg aactcaggac caatcgtcat cgtcggtttc atgggctgcg gcaaaaccgc
     1861 cgtcgcgcac gcactggcgc gcaaattcaa tctgccaatg gttgacctgg accgcacgat
     1921 cgccaagcaa cacggaagga ccgccgcaca actgatccgc gaagacggcg agcccgcttt
     1981 tcgcgcgatc gaaaccaaag ccctgcacca actcctcgag gccggccggc gaggcgtcat
     2041 cgcactcggc ggcggcgcgt ggattaccga cgtcaatcga aagctgatcg accagtacag
     2101 ttgcaccagt gtatggctcg ataccccgtt cgaattgtgt tggcggagaa tcgaagcatc
     2161 tgaagaagat cgaccattgg gccgcacgcg cgaacaggcc gaacaactct accgcgcgcg
     2221 caaaccggtg tatcaacagg ccacgatccg agtgccagtc accgccgacc aacccgttga
     2281 aagcatagtg gcccggctcg tcgacgcgat ttaggccacc tcaccagcgc gtgagaaacg
     2341 agcgcagcga gcgatccatc tcgtcgaatg actccgcgca aaacagaatc gcctggtagt
     2401 gcgttgggtc gtaaacgtgg ttcgccgcgg cttccagatc gagcggtcgc aactccgctt
     2461 tgtgcatctc cgccagttca cccgccgacg acaacaaccc ggtgccgtaa gccttgatct
     2521 gtccgttctc acgcaaaaca ccaaactcga tcgtgaacca gtagacccgc gccaaccgat
     2581 ccaactgttc ctccgacttc gtccgccgca ccgcttcgcc aaacatccga ttgagctcgg
     2641 cgaaccgcgg gctcgccagc gtcaccgcgt gcccgatgat ctcgtgcaca acgtcgggct
     2701 ccggcgtgta aagcggtgtc gagtggtgcc ggatgtactg cgtgcaaaga aacacaccgc
     2761 gcgccagcga ctcgagaaac acgcgcggct caaccagacc cgcgaccggt tcgagctgaa
     2821 agccgctgat cgcttccacc ttgcggctga cttcgtccaa ctgcggaatc cgatccgtgt
     2881 cgaagttcaa tttcgcaaga caatcgcgat actcggcaca cgcgtgttca cgatgcgccg
     2941 gaccaagcgc ggtccagatc gttcgccaaa catcatgttc ctgttgggtg tacggcgcgt
     3001 ggggaatcgg ctgtccgggc cggtaactca tggcgatgtc ggcgatcgcg ttgcgccgcg
     3061 cgcgatattc agggtcgcga aaacccggat ggtccgggtc aagttcgata atccgcactt
     3121 caacgtggtc cagcaatacg ggtttagttt cgagtggcgt cattggtttt cctcgcaaaa
     3181 taaaaaaccg gccacccatc ctcctggaag gattggtggc cggttaatga aacctgtcgt
     3241 tggttgctac atcagcatgc gccgtcagtc tatcgtccga ccgctactcc cagcggcg
//
LOCUS       DASWTX010000673         2792 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_118029, whole genome shotgun sequence.
ACCESSION   DASWTX010000673 DASWTX010000000
VERSION     DASWTX010000673.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118029"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            149..2047
                     /locus_tag="VGD38_10295"
     CDS             149..2047
                     /locus_tag="VGD38_10295"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HEY0728449.1"
                     /translation="MNSHTARNLIAILLIVGLFVALRVSLRVSEAEVTSAAARFGFSK
                     TTLPELGGPPVRMQRLVHPSLQRVSAFVSTVGAAVALNDVDGDGVSNDACYIDTRTDQ
                     VVITPVPGTGDRYKPFALDQGPLFDRDRMAPLGLLLSDVNEDGRVDVVVYYAGRAPLI
                     FLWRPSVENSSLSAGNYTARDIFPNEIWMTGSAATADLDGDGHLDLIFANYFNDGSDI
                     YNPSGAGTVSMPESFSHAFNGGGERIFRWTGSSAGTEPQVSYKEVVDALPAGVGGGWG
                     LAIGACDLDGDLLPELYIAHDFGPDRLFWNRSTPGRIQFALLQGANSFSSPKSYVLGK
                     DSFKSMGVDFGDLNDDAIPDIYVSNITEPGGFQESQMMFLSTRSVNRLETGVAPYINK
                     SDSLGLSRTGWAWDAKLDDFDNDGRLEALQATGFIRGTDSNWPEIQELGTANDVLISS
                     VGSWPKLQYGADLAGHNQNPFFVQAGAHFVDIAKQIGFGEDYVSRGIAIADVDRDGRL
                     DMIVSNMWGPASYYHNESPRTGAFLGLRLLLPIDDSNIKGRAAVGAKVSVTLPSGRVL
                     TRQVDGGNGHSGKRSPDIHFGLGEVAGAVQVRIDWRDRFGRVQHKVLRLNAGWYTVLL
                     GSDAEVQP"
     gene            2044..>2792
                     /locus_tag="VGD38_10300"
     CDS             2044..>2792
                     /locus_tag="VGD38_10300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728450.1"
                     /translation="MSGSNIRLAALRRFAITITVLNLLGHMVLGFENSWAQMVVALGT
                     AYVTELLLETVDAWASGRPRRYEGGLVTFVDFLLPAHISGMAVSMLLYSGELLLPFAF
                     ASAVAIASKALFTYPVNGSERHFLNPSNTGIALTIFLFPTMAPIVPWQFTENLSGNWS
                     RLFAVAVICLGTYMNWRYTRRMPLVFAWVLVFALQGAVRCFINDLPLTVALVPLMGVS
                     FLTFTFYMVTDPGATPSNSREQILFGAGIAVV"
BASE COUNT          569 a          802 c          789 g          632 t
ORIGIN      
        1 aataatcacc atttctatcc gcgctctgcg cgtcatggct tctactggtg ggaagtagat
       61 ctaacgctct acattttgaa agcgctgtct tatctaggca tcgtctggga cctgcaaact
      121 ccaccacaaa gaatcttcgc aaagacgcat gaatagccac accgccagga acctgatagc
      181 aatcctgctc atcgtcgggt tattcgtagc tcttcgtgtt tcgcttcgcg ttagcgaggc
      241 ggaggtaaca tccgcagccg ccaggtttgg gttttcaaaa acgacgttgc ccgagcttgg
      301 tggtccaccc gttcggatgc agcggctcgt tcatcccagc ctgcaacgcg tctcagcatt
      361 cgtttcaaca gtcggagccg ctgttgcgct gaatgacgtc gacggagatg gcgtgtcgaa
      421 tgacgcttgt tacatcgaca cgaggaccga tcaggtcgtc attactcctg tgcccggtac
      481 gggagatcga tacaagccgt tcgcgctgga ccagggaccg ctgttcgacc gcgatcgaat
      541 ggcgccgctg ggactgctgc tatcggacgt gaatgaagac ggccgcgtag acgttgtcgt
      601 ctactacgca ggccgagctc cgctcatttt tctttggcgt ccttctgttg aaaacagttc
      661 actcagcgcc ggtaactaca ccgcacgcga catcttccca aacgaaatct ggatgacggg
      721 ttcagcagcg accgcagacc tcgacggcga cggtcatctc gaccttatct ttgccaacta
      781 cttcaacgac ggctccgata tttacaaccc ttccggtgcg ggaacagtgt ccatgccgga
      841 atcgttttcg cacgctttta acgggggcgg cgaacgtatc ttccgctgga ccggctcgag
      901 cgccggaacc gagccgcagg tgagttacaa ggaagtcgtc gacgccttgc cggcaggagt
      961 cggcggtggt tggggactcg cgatcggcgc gtgcgacctc gacggtgatt tacttcccga
     1021 actctacatc gcgcacgact tcggacccga tcgtctcttt tggaaccgat cgacgcccgg
     1081 tcgcattcag ttcgccttac tacagggagc taatagtttc agttcgccga aatcttacgt
     1141 actcggcaaa gactccttca aaagcatggg cgtcgatttc ggtgatctga acgacgacgc
     1201 cattcccgac atttacgtca gcaacatcac tgaacccggc ggctttcagg aaagccagat
     1261 gatgtttctg agtacccgat ccgtgaatcg tctcgaaacc ggcgtcgctc cttatataaa
     1321 caagagcgac tcgcttggtc tgtcgcgaac aggttgggct tgggacgcaa aactcgacga
     1381 cttcgacaac gacggacgac tcgaggcgct gcaggcaacc ggtttcatcc gcggaacaga
     1441 cagcaattgg cccgagattc aggagctggg cacggcgaat gacgttctta tttcgagcgt
     1501 cggttcgtgg cccaagcttc aatacggagc cgacctcgcg ggacacaatc aaaatccctt
     1561 ctttgtacaa gccggcgctc acttcgtgga catagcaaaa cagatcggtt tcggcgaaga
     1621 ctacgtcagt cgcggaatcg caatcgccga tgtcgatcgc gatggccgtc tcgacatgat
     1681 cgtctcaaac atgtgggggc cggccagcta ctaccacaac gagtcgccgc gcacgggagc
     1741 atttctcggt ctgcgtctac tgctcccgat cgacgactcg aatataaaag gacgcgcggc
     1801 tgtaggagca aaggtgagtg tcacgcttcc gagtggaaga gtgctgacga gacaggtcga
     1861 cggcggcaac ggacatagcg gaaaacgatc gcctgatatt catttcggac tcggcgaagt
     1921 cgcgggcgcg gttcaagtaa gaattgactg gcgcgatcgt ttcgggcgcg tgcagcacaa
     1981 ggttcttcgc ttgaacgcag gctggtacac cgttctgctt gggtcagacg cggaggtcca
     2041 gccatgagtg gatcgaacat ccggctcgca gcactgcgac gattcgcgat cacgatcacg
     2101 gtcttgaatc tactgggcca catggtgctc ggcttcgaga actcgtgggc gcaaatggtc
     2161 gtggcgctgg gcacggccta tgtcactgag ctactgctcg agacggttga tgcgtgggcg
     2221 tccggccggc cgcgccgcta tgaaggcgga ctcgtcacct tcgtagactt tttattgccg
     2281 gcgcacattt cgggaatggc agtctcgatg ttgctttaca gcggcgaact gctgcttccc
     2341 ttcgcgtttg cttccgccgt cgcgattgct tccaaagcgc ttttcacgta cccggtaaat
     2401 ggttccgagc gccacttcct caatccgtcc aacacgggaa tcgcactcac gatctttctg
     2461 ttcccgacaa tggcgccaat agtgccgtgg caattcacgg aaaatctttc gggtaactgg
     2521 agccggctct ttgccgtggc cgtcatctgc ctcggcacgt acatgaactg gcgctacacg
     2581 cgacgcatgc cgctcgtttt cgcctgggtg ctcgtgtttg cgttgcaggg agccgtgcgt
     2641 tgtttcatca atgacctgcc gttgaccgtg gcattggtgc cgctgatggg cgtgagtttt
     2701 ctgacgttca ccttctacat ggtcaccgat ccgggcgcca cgccgagtaa ttcacgagaa
     2761 cagattttgt tcggcgccgg tatcgcagtc gt
//
LOCUS       DASWTX010000674         4038 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_419967, whole genome shotgun sequence.
ACCESSION   DASWTX010000674 DASWTX010000000
VERSION     DASWTX010000674.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4038
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_419967"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..269)
                     /locus_tag="VGD38_10305"
     CDS             complement(<1..269)
                     /locus_tag="VGD38_10305"
                     /inference="COORDINATES: protein motif:HMM:NF024803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEY0728451.1"
                     /translation="MKDPRPKVISFPSPVPSKADYQRVKSSYSIREIKQLFGLSEKTI
                     RRWTEQGVIQASPASQSPDYVYDFNALTQFRRVRELRAQGHSLRQ"
     gene            complement(297..1178)
                     /locus_tag="VGD38_10310"
     CDS             complement(297..1178)
                     /locus_tag="VGD38_10310"
                     /inference="COORDINATES: protein motif:HMM:TIGR02772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045027 - DNA end binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HEY0728452.1"
                     /translation="MRSIWKGHIRFLLVAIPVRIYNAIETSEKIQFNQLHRDDFGPIG
                     YDKRCKKCGEVVTNDQITKGYQYEPDRYAIVEPEDIAKIKIKTTKAVDIVGFVDREEI
                     PTTFYDSPYFAGPDGAVSEKPYALLREVMKQTGKIAVGKVVLRDREDLVAVFPHEDGL
                     VLQKLHYPHELRKMEDVPDLEGVANLDANKLNKSELKLATTLVQEMATTLSEIDTADA
                     YHNALRTLIDSKIKGGELAEFEVEEVPRLDIMSALKKSLQASNRKPMVKAPAAAAKKK
                     PQITLVKPRAAKKRKVG"
     gene            complement(1288..2595)
                     /locus_tag="VGD38_10315"
     CDS             complement(1288..2595)
                     /locus_tag="VGD38_10315"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY0728453.1"
                     /translation="MQVNLKVVAGPYKGRIFSFTQHDSFLIGRSRDAHLYLPDDRYFS
                     RNHCLLEINPPRSFLRDLNSTNGTFVNGQRVAHAFLNDGDRIQGGETILLVEVTASPP
                     SSDLSETTQDAMPRRPVLVMVECLNCGRREQAQASAPEERLTFLCEDCRIELKRSPQA
                     IPGYDTVKVIGRGGMGCVMLGREQRTGRAVAIKTLLPEFAISDKALKRFMREIDVAAA
                     LKHKNIVEFIDRGTHNGVVYLVTEFVDGADACKLAEQSGGCLPYNDAISIISQALDAL
                     SYAHAQGYIHRDFKDQNILVSGHSPNYVAKLTDFGLAKSFTHSGMSGVTMAGEMAGTL
                     AYMSPEQLRNFRDVKPQSDIYAVGMTAYSLLSGSLALDITSKGNINDTIRAIFEQPAV
                     PLRQRAPHLPGPVCDIIDRALAKDPAQRWQTASAMRTALLHCT"
     gene            complement(2619..3653)
                     /locus_tag="VGD38_10320"
     CDS             complement(2619..3653)
                     /locus_tag="VGD38_10320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728454.1"
                     /translation="MKRCPTCNRTYTDLSLNFCLEDGTPLSTDAPGGPDPNATLRYPS
                     PRDTAEPPPTEIYRPAPSTATPRPAPPPPPPPPPSQQQWSPTPTQVPRKKSNAVWWIL
                     GGFAALLVIGVGLVVMLIALASLGSDPNSNNLNANTNRNANANVSTNANIPNSNASVT
                     PTGPLVDDFSQKKWSVGVSQFGRMWYENDEYHMSSKDQTYIVIYAPTEDYSTENATVK
                     VTARMVDDTVPSNGFGLMVHCTRSRTNKLEDYALLIYPSEEPEYEIIQHKESQQSSLV
                     ARTRSDAILPGTKPNQLEIRIKGSELSFYANGQFLTKITDPENYRRGRAGFYTSDVTN
                     VAFDNLEIDR"
     gene            complement(3748..>4038)
                     /locus_tag="VGD38_10325"
     CDS             complement(3748..>4038)
                     /locus_tag="VGD38_10325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728455.1"
                     /translation="RLLDDVGCRDVHTMSLAFRRRREVLRALRQHDVSARCRRITNTT
                     ANCGARERRHLLALRAHIRGSHKILRPLRYTVRKSGARMARAKAGGSPLPDV"
BASE COUNT          808 a         1106 c         1173 g          951 t
ORIGIN      
        1 atctgtcgca ggctatgtcc ctgggcacgc aactcacgga cacggcgaaa ctgcgtcaac
       61 gcattaaagt cgtaaacata atcaggtgat tgtgacgccg gcgacgcctg aataacaccc
      121 tgctcggtcc aacgtcggat agtcttctca ctcagtccga agagttgctt aatctctcga
      181 atcgagtagg aagatttgac acgttggtaa tctgcctttg acgggacagg tgagggaaac
      241 gagattacct tcggccttgg atctttcatc gaagtcacga atagtgctgg atagaactac
      301 ccgacttttc gcttctttgc cgcacgcggt ttcaccagcg tgatctgcgg cttcttcttc
      361 gctgcggccg cgggcgcctt caccatcggc ttgcgattcg acgcctgcag actcttcttc
      421 agcgcgctca taatatcaag tctcggaact tcctcaactt cgaattccgc aagctctccg
      481 cctttgatct tcgaatcgat caaagtgcgc agcgcattgt gataagcgtc ggcagtatcg
      541 atctcggaaa gcgtcgtcgc catttcctgc accagcgtgg tcgcgagttt caactcactc
      601 ttgttcagct tgtttgcatc gaggttcgct acgccttcaa gatcaggcac gtcttccatc
      661 ttgcgaagct cgtgcgggta atgaagcttc tgcaacacga gaccgtcttc gtgtggaaac
      721 accgcaacca gatcctcacg atcgcgcaac acgactttgc ccacagcgat cttgccggtc
      781 tgcttcatca cttcgcgcaa cagcgcatac ggcttctctg aaacagcacc atccggacca
      841 gcaaaataag gcgagtcata aaacgtcgtc ggaatctctt cacgatcgac gaagcctacg
      901 atatcgacag ccttggtcgt cttgatctta atcttcgcaa tgtcttccgg ttcaactatc
      961 gcgtagcggt ccggctcata ctggtaaccc ttcgtgatct gatcgttggt gacgacctca
     1021 ccgcacttct tgcagcgctt gtcgtaaccg attggaccaa aatcgtcgcg gtgcaattgg
     1081 ttgaactgaa tcttctcgct ggtttcgatg gcgttgtaga tgcgaacggg aatggcaacc
     1141 agcagaaagc gtatgtgacc tttccagatg gatctcattt acaggtctcc tgatgcgaaa
     1201 gcgcggactt caggagcccg cgctggcggg tattatgcgt gcgaaaaggc gtttagtaaa
     1261 ggctttttgt gccacggatg acacagatca agtgcagtgc aacagtgcgg tgcgcatggc
     1321 agacgctgtt tgccagcgct gtgcaggatc ctttgcaagg gcgcggtcga tgatgtcgca
     1381 gactggcccg ggcaggtgcg gcgcgcgctg gcgcaaaggc acggcgggtt gttcgaagat
     1441 ggcccggatg gtgtcgttga tgttgccttt gctcgtgatg tcgagcgcga gcgaaccgga
     1501 cagaaggctg taagccgtca tgccgacggc gtaaatgtct gactgcggtt tgacgtcgcg
     1561 aaaatttcgc agttgttcgg gcgacatgta cgccagcgta ccagccatct cgcccgccat
     1621 ggtcacgccg ctcatgccgg agtgagtgaa actcttcgcg agaccgaagt ccgtcagctt
     1681 cgcgacgtag tttggcgagt gacccgagac gagaatgttc tggtctttga agtcgcgatg
     1741 aatgtagccc tgcgcgtggg cgtaggagag cgcgtcgagt gcctgcgaga tgatcgaaat
     1801 ggcgtcgttg taaggaagac aaccgccgct ctgttcggcg agtttgcagg catcagcgcc
     1861 gtcgacgaac tcggtcacga gatagacgac gccgttgtgc gtgccacgat cgatgaactc
     1921 gacgatgttc ttgtgcttca acgcggcggc gacgtcgatc tcgcgcatga agcgtttgag
     1981 tgctttgtcg ctgatggcga attccggaag taatgttttg attgcgacgg cgcgtccggt
     2041 tcgttgttcg cgtccgagca tcacacaacc catgccgccg cgaccgataa ctttcactgt
     2101 gtcatagccc gggatcgcct gcggcgaacg cttcaactcg atgcggcagt cttcgcaaag
     2161 aaacgtgaga cgttcttcgg gcgccgacgc ctgcgcctgt tcgcggcggc cacagttcaa
     2221 acattcaacc atgacgagca cgggccggcg cggcatcgcg tcctgcgtgg tttccgaaag
     2281 atcgctgctc gggggactcg cggtcacttc aaccagcagg atcgtctcac caccctgaat
     2341 gcgatcgcca tcgttgagaa acgcgtgcgc gacgcgctgg ccgtttacaa aggttccgtt
     2401 agtggaattc agatcccgca ggaaagagcg cggcgggttt atttcgagca ggcagtgatt
     2461 gcgcgagaag tatcgatcgt ccggtaaata aaggtgagcg tcgcggctac gtccaatcag
     2521 aaaactgtcg tgttgtgtga acgaaaagat ccggcccttg tacggaccgg ccacgacttt
     2581 caggtttacc tgcatttctg attggagcca cgaagagatc agcgatcgat ttcgaggtta
     2641 tcaaatgcca cgttcgtcac gtcgctggta tagaacccgg ctcgtccgcg ccggtagttc
     2701 tcggggtcgg tgatcttggt caggaattgt ccgttggcgt aaaacgacaa ttcgctgcct
     2761 ttgattctga tttccaactg gttgggcttg gtgcccggca aaattgcgtc cgaccttgtg
     2821 cgtgcgacga gtgacgattg ttggctttcc ttgtgctgga tgatctcgta ttcaggttct
     2881 tcactcggat agatcagcaa agcatagtct tcgagcttat ttgttctgga ccgggtgcag
     2941 tggaccatca aaccaaaacc gttggacgga acggtgtcgt cgaccatgcg cgccgtcact
     3001 ttcacggtgg cgttttcagt gctgtagtct tccgtcgggg cgtaaatgac gatgtatgtc
     3061 tggtcttttg agctcatgtg atactcgtcg ttctcgtacc acatgcggcc aaactgcgag
     3121 acgccaacgc tccacttctt ttggctaaag tcgtcgacca acggacccgt tggcgtaaca
     3181 ctcgcgttgc tgttgggaat gttcgcgttg gtagaaacgt tggcattggc gttgcgattc
     3241 gtgttcgcgt tgagattgtt gctgttcgga tcagacccga gactcgccag cgcgatcagc
     3301 atcaccacga gccccacgcc gatcacgagt agcgccgcaa aaccgccgag tatccaccag
     3361 accgcattcg acttcttgcg cggcacctgc gttggcgttg gcgaccactg ctgctgcgaa
     3421 ggcggaggcg gaggtggcgg cggcggcgcc ggccgcggcg tagctgtgct tggcgctggc
     3481 cgatagatct ctgtcggcgg cggttcggca gtgtctcgtg gtgacggata cctgagcgtt
     3541 gcgtttggat cgggtccgcc tggtgcgtca gtcgatagcg gggttccgtc ctccaaacaa
     3601 aagttcaggg agagatccgt gtacgtgcgg ttacacgtcg ggcagcgctt catcgcggca
     3661 cagcttataa gaaaacttca aattctctca agggttattc gtgttccgca gcgtccgcag
     3721 aactttgtcc cggcaggata actggtctta cacgtccggc aaaggacttc caccggcttt
     3781 ggcgcgcgcc attcgagcgc cggatttcct aacggtatac cgcagcggcc gcagaatttt
     3841 gtggctgccg cgtatgtgtg cccgcaacgc gagcaagtga cgccgctcgc gggcgccgca
     3901 gtttgcggtt gtgtttgtaa ttcgccggca acgggctgaa acgtcgtgtt gccgcagcgc
     3961 ccgcaatact tcacgccttc ggcgaaacgc gagtgacatc gtgtgcacat cacgacaacc
     4021 aacgtcgtcg agtaatcg
//
LOCUS       DASWTX010000675         2011 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_359780, whole genome shotgun sequence.
ACCESSION   DASWTX010000675 DASWTX010000000
VERSION     DASWTX010000675.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2011
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_359780"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            174..1502
                     /locus_tag="VGD38_10330"
     CDS             174..1502
                     /locus_tag="VGD38_10330"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CpaF family protein"
                     /protein_id="HEY0728456.1"
                     /translation="MALRERLIGNANLPGAGSDGTGQHSFQEMKARLHRTLINRMDLT
                     KLSSLSSEQVHAEVSRLAEVVLAQEAMPLSAAERERLVNDVQHELFGLGPLEPLLKDP
                     TVSDILVNAHDTIYIERRGKIEATNVRFKDDEHLMRVIERIVSSVGRRIDESSPMVDA
                     RLQDGSRVNAIIPPLAIDGPVLSIRRFGADPLKMAALVENKALTRDIADMLQMVVHAR
                     LNILISGGTGAGKTTLLNALSAFIPENERIVTIEDSAELQLQQPHVVRLETRPPNIEG
                     KGEVTQRDLVRNALRMRPDRIVIGEVRGGEAIDMLQAMNTGHDGSLTTVHANTPRDAL
                     ARLETMIQMTGMRLSDRAMRQQIASALNLVVQAARLSDGSRRVTSISEVTGMEGETIT
                     MQEIFMFERTGVDQQGQVIGRFRPTGIRPRFAERLKSCGLQLPRVFFEEM"
     gene            1509..>2011
                     /locus_tag="VGD38_10335"
     CDS             1509..>2011
                     /locus_tag="VGD38_10335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728457.1"
                     /translation="MIISFLVFVFALFLVLGAYLLATHGTDKKRQKLQQRLNEALMHS
                     AQTEDIDVVLARNELMSEIPFVNRTLINLQAALQLKRMLDQADLHITPSRLLMFSFMA
                     GMLGALAASVLTIFIPLMIMAGLACAAIPVIHVWYRRKKRFDAFLEQLPDALDLISRA
                     LSAGHAFS"
BASE COUNT          428 a          596 c          573 g          414 t
ORIGIN      
        1 ccaggaaatc tcgctgggtg tcatgccgct cgccgaaaca aaaccacgcc gcgctttctg
       61 gaattcgttc ctgaagaaac agccggctca gccacaggca caagcgcaat tcaacctgca
      121 aacctcaatg gaaaaggtct aaaaccgcgg ccctccgcaa ctgaaaaaac atcatggccc
      181 tacgcgaaag actaatcggc aacgcaaatc ttccgggcgc cggctccgac ggcaccggcc
      241 agcattcttt ccaggagatg aaggctcgtc ttcatcgcac cctgatcaac cgcatggact
      301 tgaccaagct gtcgagtctt tcgtcagaac aggtgcacgc tgaagtttcg cgtctggccg
      361 aagttgtgtt ggcccaggaa gcgatgccgc tgtccgctgc cgagcgcgag cggctcgtca
      421 acgacgttca gcacgagctc tttggtcttg gaccactcga gccgttgctg aaagatccga
      481 cggtctccga catcctggtc aacgctcacg acacgatcta catcgagcgt cgcggcaaga
      541 tcgaggcgac caacgtccgt ttcaaagacg acgaacactt gatgcgcgtg atcgagcgta
      601 tcgtgtcgtc agtcggacgg cgcatcgacg aatcgtcgcc gatggtcgac gcgcgtctgc
      661 aggatggttc gcgtgttaac gcgatcattc cgccgttggc gattgatggt ccagtgctct
      721 cgattcgccg gttcggcgcc gacccgttga agatggcggc gctggtcgag aacaaggcgc
      781 tgacgcgaga catcgccgac atgttgcaga tggtcgtgca cgcgcgcttg aacattctga
      841 tctcgggcgg aaccggcgcc ggtaaaacga ccttgctgaa cgcgctctcc gcgttcattc
      901 ccgagaacga acgtatcgtc acgatcgaag actcggcgga attgcaactg caacagccgc
      961 acgtcgtcag actcgaaaca cgtccaccca acatcgaagg caaaggcgag gtcacgcagc
     1021 gagatctcgt gcgcaacgca ctgcgtatgc gtcccgatcg catcgtgatc ggcgaagtcc
     1081 gcggcggcga agcgatcgac atgcttcagg ccatgaacac cggtcacgac ggcagtttga
     1141 cgacggttca cgccaacaca ccgcgcgacg cattggcgcg tctcgaaacg atgatccaga
     1201 tgacgggtat gcgtctttcc gatcgcgcga tgcgccagca gatcgcttcg gcgttgaacc
     1261 tcgtggtcca ggctgcgcgc ctgtcagacg gttcgcgacg cgttacatca atttcagaag
     1321 tcaccggcat ggaaggcgaa acgatcacca tgcaggaaat cttcatgttc gagcggaccg
     1381 gcgtcgatca gcaaggtcag gtcatcggcc ggttccgtcc aactggtatc cgcccacggt
     1441 ttgccgaacg attgaagtct tgcggcttgc agttgccacg ggtcttcttc gaggagatgt
     1501 agctcacaat gattatctcg ttcctggtat tcgtgttcgc gctgttcctg gtcctgggtg
     1561 catacctgct ggcgactcac ggaacagaca agaagcgtca aaaactgcaa cagcggctca
     1621 acgaagcgct gatgcactcc gcgcaaaccg aagacatcga cgtggtgctc gctcgcaacg
     1681 agttgatgag cgagatcccc ttcgtcaacc gcacgctgat caatcttcaa gccgcgttgc
     1741 agttgaagcg gatgttggac caggcggatt tgcacatcac tccttcgcgc ctgctgatgt
     1801 tttcgtttat ggccggcatg ttgggtgcgc tggccgcgtc ggtgctcacg atttttatcc
     1861 cgttgatgat catggccggt ttggcttgtg cggcgatacc agtgatacac gtctggtacc
     1921 ggcgtaagaa gcggttcgat gcatttctgg agcagcttcc cgatgcactc gatctgatca
     1981 gccgtgcact cagtgccggt cacgcatttt c
//
LOCUS       DASWTX010000676         4998 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_7605, whole genome shotgun sequence.
ACCESSION   DASWTX010000676 DASWTX010000000
VERSION     DASWTX010000676.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4998)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4998)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4998
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7605"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..643)
                     /locus_tag="VGD38_10340"
     CDS             complement(<1..643)
                     /locus_tag="VGD38_10340"
                     /inference="COORDINATES: protein motif:HMM:NF017945.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urate hydroxylase PuuD"
                     /protein_id="HEY0728458.1"
                     /translation="MNLDPTLSEWLNLLFRWTHVFAGIMWVGTTYYFTWLDARLTEEE
                     KAAAATGASVWMVHSGGFYVVERRKVPDLASRTLHWFRWEAGITWLSGFALLVLIYYL
                     GGGALIDPDVYDISLGWAVALGISVIFGAGFVYDVLMASPLGRHEKAFAVVAYVLIVA
                     LAYGLTQVFSARAAYIHLGAIFGTIMAANVWMHILPSQKKMIAALKEGRKPDEQ"
     gene            complement(657..1001)
                     /gene="uraH"
                     /locus_tag="VGD38_10345"
     CDS             complement(657..1001)
                     /gene="uraH"
                     /locus_tag="VGD38_10345"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR02962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0019628 - urate catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HEY0728459.1"
                     /translation="MSTISTHILDTSRGAPASGVAVSLELQNNDESWTELSHAWTDQD
                     GRVKPFFLVDRPVSNGTYRLVFDTEPYFSSLSLACFYPQVTVVFNVDDASQHYHVPLL
                     ISPYGYSTYRGS"
     gene            complement(1011..1523)
                     /gene="uraD"
                     /locus_tag="VGD38_10350"
     CDS             complement(1011..1523)
                     /gene="uraD"
                     /locus_tag="VGD38_10350"
                     /EC_number="4.1.1.97"
                     /inference="COORDINATES: protein motif:HMM:NF010372.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0019628 - urate catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline
                     decarboxylase"
                     /protein_id="HEY0728460.1"
                     /translation="MHDLAWLNELVPEEARKELLKCCGATRWAETVERERPYASLEQL
                     LARSNDVWWSLDEADWLEAFRSHPKIGERKAANAVSAQSQQWSAQEQQGFQNATHEAV
                     EKLARLNVDYEKKFGFIFIVCATGKSTDEILALLEQRLPNNAAVELPIAAEEQAKITE
                     LRLRKLLSYS"
     gene            complement(1528..2520)
                     /gene="alc"
                     /locus_tag="VGD38_10355"
     CDS             complement(1528..2520)
                     /gene="alc"
                     /locus_tag="VGD38_10355"
                     /EC_number="3.5.3.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR02961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004037 - allantoicase activity [Evidence
                     IEA];
                     GO_process: GO:0000256 - allantoin catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="allantoicase"
                     /protein_id="HEY0728461.1"
                     /translation="MNFTDLIDLASEKVGGAVLVANDDFFAPKENLVRASEPVFIEGK
                     YTDRGKWMDGWESRRRRTPGFDWCIVRLGLAGIVRGVVVDTSFFRGNYPEQCSLDGAA
                     FEGLPTGEQLLDESVQWEPLLPQVALAGDSRNPFAIEYAGRITHLRFRIYPDGGVARL
                     RVYGEVVPDWERLKRAGGHIDLAAAENGALVLSCSDMFFGHRHNLIMPGRAADMSDGW
                     ETKRRRGPGHDWAIIKLARPGHLQSIEVDTSHFKGNFPESCSLEACNATDDADLSDPS
                     LVWTNVLTRTKLQAHTRHYFDRELANAGVVSHLRFNIFPDGGVSRLRVYGTLAE"
     gene            complement(2521..3852)
                     /gene="allB"
                     /locus_tag="VGD38_10360"
     CDS             complement(2521..3852)
                     /gene="allB"
                     /locus_tag="VGD38_10360"
                     /EC_number="3.5.2.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR03178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004038 - allantoinase activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0050897 - cobalt ion binding [Evidence
                     IEA];
                     GO_process: GO:0000256 - allantoin catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="allantoinase AllB"
                     /protein_id="HEY0728462.1"
                     /translation="MPDVDLIIRGQTVVSADAIGPASIHVRGEKIVAVRPFEEVLKDC
                     EIVEAEAEAIVMPGLVDTHVHINSPGRTEWEGFRTATRAAAAGGVTTLIDMPLNSIPP
                     TTTLAGFKTKLETAKDDCFVDVGFWGGVVPGNTSELAPMFAAGVVGFKCFLVPSGVDE
                     FAHVTEHDLRVAMPELTRIGAMLIVHAELPGPSNPVDDTDYEAFLRSRPRSMEDEAIE
                     LMIRLSREFGTRVHIVHLSSSGALPMLREAQAAGVKITAETCPHYLHFTSETIPERAT
                     EFKCCPPIRESENREKLWQGLADGTIDMVVSDHSPCPASMKLRDTGDFMAAWGGIASL
                     QLRLPVTWTEARRRGFSLRDLTNWLCTNPARQVSLASRKGTIAAGCDADIIIWKPDRE
                     LVVDAAHLEHRHKLTPYHGESLTGVVEKTFLRGRKLYENGLDEIAAGELLI"
     gene            complement(3859..4602)
                     /locus_tag="VGD38_10365"
     CDS             complement(3859..4602)
                     /locus_tag="VGD38_10365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728463.1"
                     /translation="MSTSQIEFRRNAVRPIECISGAWALIKDQYWMFVGLAAVAMLIG
                     SAVPMGILLGPMMCGLDMTFFKRMRNEPFEFGLLFKGFDYFGPILVVTLLHVIPIVAI
                     VVPAYLVFYVGFILTITMQGNEPNPAAMLTVMGMFAIFWLVMIIVIVFISIGFTFTYP
                     LIVDRKLNAMDAIKWSFKAAMGNFWGILGMTLLTGLMAFVGVLLCYVGVFLVFPIQYC
                     AIAVAYEKVFGLSDPNEIVTNLPPPPPSF"
     gene            complement(4627..>4998)
                     /locus_tag="VGD38_10370"
     CDS             complement(4627..>4998)
                     /locus_tag="VGD38_10370"
                     /inference="COORDINATES: protein motif:HMM:NF015415.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728464.1"
                     /translation="GDELLSRIRMPRRFADVKQYYRKVGTRKAQAISKVCFAGVARLE
                     DTRVADVRVVLGSVAPIVLRCKQTEDAIRGKDINDDTLKLARETLQREIVPIDDVRST
                     ADYRLRVAANLLVDFLVTARS"
BASE COUNT         1129 a         1501 c         1356 g         1012 t
ORIGIN      
        1 gttgctcgtc gggcttacgg ccttctttca gcgcggcaat catttttttc tgcgacggga
       61 ggatgtgcat ccagacattc gcggccatga tcgtgccgaa gatcgcgccg agatgaatgt
      121 acgcagcgcg cgcgctgaac acctgcgtca atccgtaagc aagcgccacg atcagaacgt
      181 aagcaacaac tgcaaacgct ttttcgtggc gtcccaaagg cgacgccatc agcacgtcgt
      241 aaacaaaacc ggcgccgaag atcacgctga tgcccagcgc gacggcccaa ccgagactga
      301 tgtcgtaaac gtccgggtcg atcaacgcac cgccgccgag atagtaaatc aacaccagca
      361 acgcgaagcc gctgagccac gttatgccgg cttcccaacg aaaccagtgt aacgtgcgcg
      421 acgcgaggtc cggcactttg cgccgttcga cgacgtagaa accgccgcta tggaccatcc
      481 aaaccgaagc gccggtcgcc gccgccgctt tttcctcttc agtcaaacgc gcgtcgagcc
      541 acgtgaagta gtaagtcgtg cctacccaca tgatgccggc aaagacgtgt gtccaacgaa
      601 acaggaggtt gagccattcg ctgagagtcg gatcgagatt catcagggac gagttgttag
      661 cttccgcgat aggtagagta gccgtaaggg ctgatcagca acggcacgtg ataatgctgc
      721 gatgcgtcgt cgacattgaa caccaccgtc acttgcggat agaagcaggc aagactgagc
      781 gacgagaaat acggttcagt gtcgaagacc agacggtagg ttccgtttga caccggacga
      841 tcgacgagaa agaaaggctt cacgcggcca tcttgatcgg tccatgcgtg gctcagctcg
      901 gtccaactct cgtcgttgtt ctggagttcg agtgaaacag cgacgccgct ggcgggcgcg
      961 ccgcgcgagg tgtcgagtat gtgggttgaa atcgtgctca tgaagactgc ttatgaataa
     1021 ctgagtagtt ttcgcaatct caactccgtg atctttgctt gttcctcggc tgcgatcggt
     1081 aattctaccg ctgcgttgtt tgggagacgc tgttcgagca gcgccagtat ctcatcagtt
     1141 gacttgcccg tggcgcaaac aatgaaaata aaaccgaatt tcttttcgta atcgacgttt
     1201 agccgagcca gtttctcgac cgcttcgtgt gtggcgtttt ggaaaccctg ctgttcctgg
     1261 gccgaccact gctgcgactg ggccgagact gcgttggctg cttttctctc gccgatcttg
     1321 ggatgactgc gaaacgcttc gagccaatcg gcttcgtcaa gcgaccacca gacgtcgttt
     1381 gatcttgcga gcagttgttc gagcgatgcg taaggccgtt cgcgttcgac tgtttcggcc
     1441 cagcgcgtcg cgccgcagca tttcaacaac tctttacgcg cttcttcggg aacgagttca
     1501 ttcagccacg cgaggtcgtg cattgcatta ctcagccaac gtgccgtaga cgcgcaaccg
     1561 gctcacgccg ccgtccggaa agatgttgaa acgcagatgc gaaacgacgc ctgcgtttgc
     1621 gagttcgcga tcgaagtaat gacgcgtgtg tgcctgaagt ttggtgcgcg tcaaaacatt
     1681 ggtccacacc agcgaaggat cgctcaggtc ggcgtcatcc gtagcgttgc acgcctcgag
     1741 cgaacagctc tcggggaagt tgcccttgaa gtgcgatgtg tctacttcga tcgattgaag
     1801 gtgtccgggg cgagcgagtt tgatgatggc ccaatcgtgt cctggcccac ggcgccgttt
     1861 cgtttcccat ccgtcgctca tgtccgctgc gcgtcccggc atgatcaggt tgtggcgatg
     1921 accaaagaac atgtcgctgc acgaaagcac gagcgcgcca ttctccgccg ctgcaagatc
     1981 gatatgacca ccggcgcgtt tgagtcgttc ccagtccggc acgacctctc cataaacgcg
     2041 cagccgcgcg acgccgccgt caggataaat tcggaaacga agatgcgtga tccgcccagc
     2101 gtattcgatc gcaaacggat tgcgcgaatc tcccgcgagc gccacctgcg gcaacaacgg
     2161 ctcccactgg accgactcgt caagcaactg ttctccagtc ggcagcccct cgaaagctgc
     2221 tccatcaagc gaacactgtt cgggataatt accacggaag aaactcgtat caaccacaac
     2281 acctcgaaca atccccgcca atcccaaccg aacgatgcac caatcaaaac cgggcgtgcg
     2341 ccgcctgcgg ctctcccacc cgtccatcca cttcccgcgg tccgtatact tcccctcaat
     2401 aaaaaccggc tcactcgccc tcaccaaatt ctccttcggc gcaaaaaaat catcattagc
     2461 gaccaacacc gcgccgccaa ccttctccga agcgagatcg atcaagtcag tgaagttcat
     2521 ttagataagc agttcccccg cagcgatttc gtcaaggcca ttctcataca attttcttcc
     2581 ccgaagaaaa gttttttcta caactccggt taatgactca ccgtgataag gcgtgagctt
     2641 gtggcgatgt tcaaggtgcg cggcgtcgac gacgagttcg cgatcgggtt tccagatgat
     2701 gatgtcggcg tcgcagccgg cggcgatcgt gcctttgcga gaggcgaggg aaacctggcg
     2761 tgcggggttt gtgcagagcc agttggtcag gtcgcgcaat gagaagccgc ggcgacgggc
     2821 ttcggtccag gtgactggaa gacgcagttg tagggatgcg atgccgcccc acgcggccat
     2881 gaagtcgccg gtgtcgcgta gcttcatgct ggcgggacac ggcgagtggt ccgacacgac
     2941 catgtcgatc gttccgtcgg cgaggccttg ccaaagcttt tcgcggttct cgctttcacg
     3001 gatcggtgga cagcatttga actccgtagc gcgctcggga atcgtctcgg atgtgaagtg
     3061 aagatagtgt ggacacgtct cggccgtgat cttcacgccc gcagcctgcg cctcacgcag
     3121 catcggcaac gcgccggaag aagaaagatg aacgatgtgt acgcgcgtgc cgaattcacg
     3181 actcaaacgg atcatcaatt cgatcgcctc gtcttccatc gagcgcggcc gcgaacgaag
     3241 aaacgcttcg taatccgtgt cgtccacggg attactcggt cccggcaatt ccgcgtgcac
     3301 gatcaacatc gctccgatcc gcgtaagctc cggcatcgcg acgcgcagat cgtgttcggt
     3361 gacgtgcgca aactcatcaa cgcccgaagg aacaagaaag cacttgaacc ccacgacgcc
     3421 cgcggcaaac atcggcgcca gctcagacgt gttcccgggc acaacaccgc cccaaaatcc
     3481 gacgtcgaca aaacaatcgt ctttcgctgt ctccagtttt gttttgaagc ccgccagtgt
     3541 tgtcgtcggc ggaatcgagt tgagcggcat gtcgatcaac gtcgtcacac cgcctgcagc
     3601 cgccgcgcgc gtcgcagtgc gaaatccttc ccactcggta cggcccggag agttgatatg
     3661 aacgtgcgta tcaaccaacc ccggcattac gatcgcctcc gcctccgctt cgacgatctc
     3721 acaatccttc aacacctctt caaatggccg caccgcaacg atcttctcac cgcgaacatg
     3781 aatcgacgcc ggaccaatcg cgtccgctga caccacggtt tgcccacgaa tgatcagatc
     3841 gacatccggc atgcagaatt agaacgatgg cgggggtggc ggcagattcg taacgatctc
     3901 gttcgggtcg ctcagcccaa acaccttttc atacgcaact gcgatcgcgc aatactgaat
     3961 cgggaacaca agaaacactc cgacgtaaca caacaacacc ccgacgaacg ccataagacc
     4021 ggtcagcagc gtcattccca ggattcccca gaagttgccc atcgcggctt tgaagctcca
     4081 cttgatcgcg tccatggcat tcagtttacg gtcgacaatc aacgggtaag taaacgtgaa
     4141 tccgatcgag atgaagacga tgacgatgat catcacgagc cagaagatcg caaacatgcc
     4201 catgaccgta agcatcgccg cggggtttgg ttcattaccc tgcatcgtta tcgtcaggat
     4261 gaacccgacg taaaacacca ggtatgccgg aacgacaatg gcgacaatcg gaatcacgtg
     4321 cagcagtgtg acgacgagga ttggtccaaa gtagtcaaac cctttgaaga gaagaccaaa
     4381 ctcaaacggc tcgttccgca tgcgcttgaa gaaggtcatg tcgagcccgc acatcattgg
     4441 accaagcaag atgcccatgg gcaccgccga gccgatgagc atcgctaccg cagccaggcc
     4501 cacaaacatc cagtactggt cctttatcag cgcccacgcg ccgctaatgc attcgattgg
     4561 tcggacagcg tttcggcgaa actcgatttg agaggtcgac attcggcttt tccttagggg
     4621 tcagatttac gatcttgcag tcacgagaaa atcgacgagc agattggcgg cgacgcgcag
     4681 tcgataatcc gctgtggaac gcacgtcgtc gatcggcacg atctcgcgct gcagcgtttc
     4741 gcgcgcgagt ttcagcgtat cgtcgttgat gtctttgccg cggatcgcgt cttcggtttg
     4801 tttgcaacga agaacgatcg gcgcaacact gccgagcacc acgcgcacat ccgcgacgcg
     4861 cgtgtcttcc aatcgtgcca cgccggcaaa gcacactttg gagatcgcct gcgccttgcg
     4921 cgtgccgacc ttgcgatagt actgcttcac atctgcgaaa cggcgcggca ttctaatgcg
     4981 cgacagcagc tcatcacc
//
LOCUS       DASWTX010000677         2213 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_161776, whole genome shotgun sequence.
ACCESSION   DASWTX010000677 DASWTX010000000
VERSION     DASWTX010000677.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2213)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2213)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2213
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161776"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..580
                     /locus_tag="VGD38_10375"
     CDS             <1..580
                     /locus_tag="VGD38_10375"
                     /inference="COORDINATES: protein motif:HMM:NF014879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEY0728465.1"
                     /translation="VDGDATLWVLANHLRAHGELKNDTVVATVMSNIGLEIAFRAVGI
                     KLVRTDVGDKYVLDELLCLGASLGGEQSGHIILPALSLAGDGMITALCLLRALRETGQ
                     TLSEATAGFQQYPQILMNVRVREKLPFDELPSVDAAVRGVEERLSHKGRLLLRYSGTE
                     PLARVMIEGENQFEIEDYANRIAEAIKREIGA"
     gene            908..2068
                     /gene="aroB"
                     /locus_tag="VGD38_10380"
     CDS             908..2068
                     /gene="aroB"
                     /locus_tag="VGD38_10380"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEY0728466.1"
                     /translation="MQRLEISINQNARKSQINIGRGIRTELGQLLSPAFANSPQRVGI
                     ISNKRVFGLYGREVVRSLKRAGCKTRTWLMPEGERYKSFAILEKAVKFLNENRFERND
                     LVLALGGGVVGDLAGFAAAIYLRGVPVVQVPTTLLAQIDSSVGGKTGVNLPAGKNLVG
                     AFHQPAAVFIDTETLMSLPQRELVAGFCEMVKHAFIADDTLLSKTVNCLREAREREFL
                     LERDFEELIAANCAFKASIVANDERESTARSDAKSRRILNFGHTTAHALEAITNYRVF
                     RHGEAVGYGMLVAGELSRNLGLLGSRELQLLREAVALCGPLPRADQLDVSQIIRALQL
                     DKKSVDGRIKWVLLEGVGLPKIVNGRLISGRVLRLSLRTGLQHRARQTESGH"
BASE COUNT          486 a          616 c          641 g          470 t
ORIGIN      
        1 cgtcgacggc gacgcaacac tctgggtcct cgcgaaccac ctccgcgctc acggagaact
       61 aaaaaacgac accgtcgtcg ccacggtcat gagcaacatc ggactcgaaa tcgcctttcg
      121 cgcggtcgga atcaaactgg tgcgcaccga cgtcggcgat aaatatgttc tcgacgaact
      181 gctgtgtctc ggcgcgagcc tcggcggcga acagtccgga cacatcattc tgcctgccct
      241 gagcctcgcc ggcgacggca tgatcaccgc gctctgcctg ctccgtgcgc tccgtgaaac
      301 cggccaaacg ctcagcgaag cgactgccgg ctttcagcaa tacccgcaaa tcctcatgaa
      361 tgtccgtgtc cgtgaaaagc tcccgttcga tgagctgcca tccgtggatg cggcagttcg
      421 gggcgttgag gaacggctct cgcacaaagg acggctgctg ctccgctatt cgggaacgga
      481 gccgctcgcc cgcgtgatga tcgaaggcga gaaccagttt gagattgaag actacgcgaa
      541 ccggatcgcg gaggcgatca agcgagagat cggcgcctga ttcggagccc agtcctgaaa
      601 tttctacaca cctacccgag aaatttctac atgctcgccc tcttcgtcac ggtcgggttc
      661 aatcgtccgc agcacttgtc cacagttttt tctagggaaa ctcactgagt tcatcgcttc
      721 agaaaaagat ggttgcacgg cacgggcgtt gcgatgtata ttgtggggca agagagacgg
      781 ttggtggatc ctccgtctca agtggttgct ggggtgagga cagtaaccac gaatatggaa
      841 gggcgcgacg cactcccacg tatgtcgcgc cctttcgctt ttatcggctc tgtgccggcc
      901 aggccccatg caacggctcg aaatttcgat aaaccaaaac gctcgtaaga gccaaatcaa
      961 tatcggccgc ggcattcgga cggaactggg tcaacttctc tctccggcgt tcgcgaattc
     1021 accgcaacgc gtcggaataa tctcaaacaa gcgagttttc gggctctatg gccgtgaggt
     1081 tgtgcgcagt ctcaagcgcg ccggctgcaa aacacgcacg tggttaatgc ctgaaggcga
     1141 gcgctacaag tcgttcgcga tccttgaaaa agccgttaaa ttcctcaacg aaaaccgctt
     1201 tgaaagaaat gatctggtgc tcgcgttggg cggcggcgtc gttggcgacc tcgccgggtt
     1261 tgccgccgca atttacctgc gtggagttcc ggtcgttcaa gtcccgacca cattgctcgc
     1321 tcagattgat tcgtcagtcg gcggaaaaac cggcgtcaac ttaccggccg gcaagaatct
     1381 cgtgggcgct tttcatcaac cagcggcagt ttttattgac acggaaacgc tgatgtcgtt
     1441 gccgcaacgc gaattggtgg ctgggttttg cgagatggtg aaacacgcgt tcattgctga
     1501 tgacacgcta cttagtaaga cggttaactg tctgcgggaa gcgcgcgaac gtgagtttct
     1561 tttggaaagg gattttgagg aattgatcgc ggcaaattgc gctttcaaag cgtcgatcgt
     1621 cgcgaatgat gaacgtgaat cgacggcgcg atcggacgcg aagtcgcgtc gcattctcaa
     1681 ttttggtcac acgacggcgc acgcgctcga agcgattacg aactaccgcg tgttccgtca
     1741 cggtgaagct gttggttatg gaatgttagt tgccggagaa ctttcgcgaa acctggggct
     1801 cctcggctcc agggagttgc agttgttgcg tgaggccgtc gcgctttgcg gaccactgcc
     1861 gcgcgccgat cagctcgacg tcagtcaaat catccgcgcg ctacagctcg ataagaaaag
     1921 cgtcgacggc cggatcaagt gggtgttgct tgaaggggtg ggcctgccga agatagtcaa
     1981 cggcaggctc atcagtggcc gagtgctacg gctctcgttg cgaactggtc tccagcaccg
     2041 cgcgagacaa acagaaagtg gtcattgatg cgaacgcaaa gagcaaacga acgcggtaac
     2101 gcgaatctga agtttcttct cgtcatgctg ataatcggag ccagcgccta tgccggctac
     2161 gtctacgttc ccgtggctta cggcgctcac aacgtcaaag acatgatgca gca
//
LOCUS       DASWTX010000678         2185 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_96717, whole genome shotgun sequence.
ACCESSION   DASWTX010000678 DASWTX010000000
VERSION     DASWTX010000678.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2185
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96717"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(113..1570)
                     /locus_tag="VGD38_10385"
     CDS             complement(113..1570)
                     /locus_tag="VGD38_10385"
                     /inference="COORDINATES: protein motif:HMM:NF012593.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate/amino acid:cation symporter"
                     /protein_id="HEY0728467.1"
                     /translation="MPENNDNPRTPDRIERDAFEREIATDLDSDTPDKPKGIPLHTKI
                     LIGLVVGVVAGVAVNRMFGGDHPRVAWVIDNITQPVGQLFLRLLLMIVVLLVFSSLVV
                     GIAGIGDIRKLGRVGLKSFGYCLVISAISVAIGITLANTIRPGERVDPATSAALQQRF
                     ASAATKTVEDATKATGAAPSPLMQVVETIVPKNPFYAMGGKEDPSMLHIMFFGLVIGI
                     AITLLPVPVTAPVLRVLEGLYEITAKIIEMIMKFAPYAVACLLFTTTARFGLDLLQAL
                     AWFVVTVLLGLSIHMFVVYSLSIYFLSRISPLEFFRRIKTVILTAFSTSSSNATLPTA
                     LRVSERNLGVPQEINSFVLTVGATANQNGTALYEGVTVLFLAQLAGVDLSFGQQLMVV
                     YLAILGGIGTAGVPSGSIPFIVGVLVTIGINPALIAIIIGVDRLLDMCRTTLNVTGDL
                     TAATFVARSEGYELLRPHEPAIVSAGVPLASRTSD"
     gene            complement(1574..>2185)
                     /locus_tag="VGD38_10390"
     CDS             complement(1574..>2185)
                     /locus_tag="VGD38_10390"
                     /inference="COORDINATES: protein motif:HMM:NF039482.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HEY0728468.1"
                     /translation="EVPVLGVNYGGLGYLTEFRIEELYDALEMILADNFRLDKRVMLS
                     VELQREDEIITRNRVLNDVVINKSALARIIEIEAYLNKQFVSSFRADGLIVSTPTGST
                     AYNLSAGGPIIFPSMNAVVVTPICPFTLSNRPLVVPDDAVIELLLKTDHEDVALTLDG
                     QVGFPLAVNDRITIRKSRTTFNLIQPSNRNYFDVLRDKLRWGR"
BASE COUNT          500 a          618 c          651 g          416 t
ORIGIN      
        1 tatagcggaa gaaccatggt ctcttacacc tttaaacgtc cgggaaattt acgcacgcgt
       61 tgtgtgcaga gtgtgacgct gctgttacta aaccgtaaat cgttaaccct tgttaatcgg
      121 acgttcgcga cgcaagtgga acgcccgctg aaacaatcgc cggctcgtgt ggccgcagta
      181 attcataacc ctcggaacgc gcgacgaaag tcgcagccgt cagatcgccc gtgacgttca
      241 gcgtcgtgcg gcacatgtcg agtaggcggt ccacgccgat aatgatcgcg atcagcgccg
      301 ggttgatacc gatcgtaacc agcacgccga cgatgaacgg aatcgatccg gaaggaacgc
      361 ccgcggtgcc gatgccgccg agaatcgcga gatagaccac catcaactgt tggccgaagc
      421 tcagatcgac gcccgcgagt tgggccagaa agagcacggt gacgccttcg tacaaagcgg
      481 tgccgttctg gttcgcggtc gcgccgacag tcagcacgaa gctgttgatc tcctgcggca
      541 cgccgagatt tcgttcagaa acacgcagcg ccgtgggcaa tgtggcgttc gacgatgacg
      601 tggaaaacgc cgtcaggatc acggtcttga tgcgccggaa aaattcgagc ggcgagatgc
      661 gcgacaggaa atagatcgag agcgagtaaa cgacgaacat gtggatcgag agacccagca
      721 aaacggtcac cacaaaccac gccagcgctt gaagcaggtc aagcccgaac cgcgccgttg
      781 tcgtgaagag cagacacgcc accgcgtaag gcgcgaattt catgatcatc tcgatgatct
      841 tcgcggtgat ttcgtaaaga ccttcgagca cgcgcaacac cggcgctgtc acgggcacgg
      901 gcagcaacgt gatcgcgata ccgatcacga gtccgaagaa catgatgtgc agcatgctcg
      961 gatcttcttt gccgcccatg gcgtagaacg ggtttttcgg aacgatcgtt tctacgactt
     1021 gcatcaacgg cgacggggcc gcaccggtcg ccttggtcgc gtcttcgacg gttttcgttg
     1081 cggcactcgc aaaccgttgc tgcagcgccg ccgacgtcgc gggatcaaca cgctcgccgg
     1141 gccggatcgt gtttgcgagt gtgatgccga tcgcgaccga gatcgccgag atcacgagac
     1201 agtaaccaaa cgacttcaaa ccgacgcgcc cgagtttgcg aatgtcgccg atgcccgcga
     1261 tgcccacaac gagcgacgaa aacaccagca gcaccacgat catcaacaac aagcggagaa
     1321 acagttggcc cacaggctgc gtgatgttgt cgatcaccca cgccacgcgc ggatgatcgc
     1381 cgccgaacat acggttgacc gcgacaccgg caaccacgcc aaccaccaaa ccgatcagaa
     1441 tcttcgtgtg cagcggaatg cctttgggct tgtcgggagt gtcggagtcg agatcggtgg
     1501 ctatctcgcg ttcgaaggca tcgcgctcga ttcggtcagg tgtgcgtgga ttgtcgttgt
     1561 tttcaggcat cggttagcgg ccccagcgca gcttgtcgcg caaaacgtcg aagtagtttc
     1621 tgttgcttgg ctgaatcagg ttgaaagtcg tgcggctctt gcgaatggtg atgcgatcgt
     1681 taacggcgag tggaaacccg acctgcccgt cgagagtcaa cgcgacgtct tcatgatccg
     1741 tcttcaacag cagctcgatc actgcatcgt cgggcacgac gagcgggcgg ttggaaagag
     1801 taaacggaca gatcggcgtg accacgacgg cgttcattga gggaaaaata attggtccgc
     1861 cggctgacag gttataggcg gtcgagcctg tgggcgtgga aacgatcaag ccgtccgcgc
     1921 gaaacgagct cacaaactgc ttgttcaaat aggcttcgat ctcgatgatg cgcgcgagcg
     1981 cggatttgtt gatgacgaca tcgttcagca cgcggttgcg cgtgatgatt tcgtcttcac
     2041 gttgcagctc gaccgacagc atcacgcgct tatcgagacg aaagttgtcc gcgaggatca
     2101 tctcgagcgc gtcgtagagt tcttcgatgc gaaactcggt caggtaaccg agcccgccgt
     2161 aattgacgcc gagcaccggc acttc
//
LOCUS       DASWTX010000679         1830 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_118159, whole genome shotgun sequence.
ACCESSION   DASWTX010000679 DASWTX010000000
VERSION     DASWTX010000679.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1830
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118159"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..407
                     /locus_tag="VGD38_10395"
     CDS             <1..407
                     /locus_tag="VGD38_10395"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEY0728469.1"
                     /translation="DRVGRDIFMYSITLKPDEDTPNELKRYVRAHKIKRGWTFLTGKP
                     DEINTLRRSLGFKDAKAKLDQDLTNHTGMVKYGNEARQWWAMFPGEANAPWIVESILW
                     MDGPDAKPMNHAKQKEPKRTERGHDHAKSKGR"
     gene            509..1411
                     /locus_tag="VGD38_10400"
     CDS             509..1411
                     /locus_tag="VGD38_10400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728470.1"
                     /translation="MCFSQTQADTTKQPQVPPNQKLDFAVGSKPDAILFDGANIWVAN
                     ELGDSVMKLSASDGSNLGTFPTGNRPVALAYDGESIWVANRSSNNVMRLLASDGSLIE
                     TIKVGRGPEALLYDGGSIWVANGEDNSVTKIRLGDGAHCTFRVGTRPIALASDGSHIW
                     VANNNSSNVTKLRADDGTNVGTFAAGRGPTGIAFDGANLWIANFYSKSVMRLNADGSV
                     RDRITVEDGPADIGFFGGFIMVLNYGSRSVSQIDPQTAKVVKTFAVGRSPVGLAFDGV
                     NIWVANGGNNSVSRVKTSITSPTP"
     gene            complement(1426..>1830)
                     /locus_tag="VGD38_10405"
     CDS             complement(1426..>1830)
                     /locus_tag="VGD38_10405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728471.1"
                     /translation="GQQLSGVSIVVGQDAAGLRGRVTATPEGAALPADLRVHLVPADR
                     EQANDVLRYSETTIASDGSFAFSNLAPGRYLILSRVEPSAETPETSPRAAAWDPTTRA
                     KLRQEAEAAKVVVDLKSCERLKDYALPLKVDQ"
BASE COUNT          427 a          485 c          541 g          377 t
ORIGIN      
        1 gagatcgcgt agggcgtgac atcttcatgt attccatcac gctcaaacca gacgaagaca
       61 ctccgaacga attgaagcgc tacgtgcgcg cgcataaaat caaacgcggt tggacgttcc
      121 tgacgggcaa acctgatgag atcaacacgc ttcggcgcag tctcggcttc aaggatgcga
      181 aagccaagct tgatcaggat ctcaccaacc acacaggcat ggtcaagtat gggaatgaag
      241 cacgccaatg gtgggccatg tttcccggtg aggccaacgc cccgtggatt gtggagtcca
      301 ttctctggat ggacggtcca gatgcgaagc caatgaatca cgccaagcaa aaggaaccga
      361 agcgcacgga acgtggacac gatcacgcca aaagcaaagg gcgctaactg aaacacgacg
      421 gggggacgga atgcgacaga aagtgctttc aagatatcga ctgctgaaga ttccgtccgc
      481 cctagtgttt gtaatagtcg ccttcactgt gtgcttttca cagacgcagg ccgacacgac
      541 aaaacaaccg caagttccgc cgaatcaaaa gctcgacttc gcggtcggca gcaagccgga
      601 cgcgatcctt tttgatggcg cgaacatttg ggtcgccaac gaacttggtg acagtgttat
      661 gaaactcagc gcgagcgacg ggtcaaatct tggaacattt ccgacaggta acagacccgt
      721 cgctcttgct tatgacggcg agagtatttg ggtagcaaac aggtccagta acaacgtgat
      781 gaggctgctg gcaagcgatg gaagcctgat tgagaccatc aaagtcggcc gaggtccgga
      841 ggccctgctg tacgacggcg gcagcatctg ggtcgccaat ggcgaagata attctgtaac
      901 caagatacgt ctgggcgatg gggcgcactg cacgtttcgt gttgggactc ggcccattgc
      961 gcttgcttcg gacggaagtc atatctgggt agcgaataac aacagcagca atgtgacgaa
     1021 gctgcgtgcg gacgatggca cgaacgtcgg aacgtttgct gcgggaagag gccctaccgg
     1081 cattgccttc gacggcgcga atttgtggat agcaaatttc tacagcaaga gcgttatgcg
     1141 attgaatgcg gacggatctg tcagggacag aattacagtg gaggatggcc cggcagacat
     1201 cggctttttc ggcggattta tcatggtgtt gaattacggt agccggtccg tttcgcagat
     1261 agatccgcag acggcgaaag ttgttaagac ctttgcggta ggaagaagtc ccgtcgggct
     1321 cgcctttgac ggtgtcaaca tttgggtagc caatggcggt aataattcag tgtcgcgagt
     1381 aaaaacttca attaccagtc ccacgcctta gcacgctaat ctccctcact ggtccacctt
     1441 gagcggtagc gcgtaatcct tcaatcgctc gcacgacttc aggtcaacta ctactttcgc
     1501 ggcttcagct tcctgtctta gtttggcccg cgtcgtggga tcccaggcgg cagctcgcgg
     1561 cgacgtttct ggcgtctcgg cgctcggttc gacacgcgaa aggatgaggt agcggccggg
     1621 tgcgagattg gaaaatgcaa aactgccgtc gctcgcgatc gttgtctcgc tgtagcgcag
     1681 cacgtcgttg gcctgctcgc ggtccgcggg cacaaggtgt acgcggaggt ccgcgggcaa
     1741 tgccgctcct tcgggcgttg cggtcacacg cccgcgtaac cccgccgcat cctgtcccac
     1801 gacgatcgaa acgccgctga gttgttggcc
//
LOCUS       DASWTX010000680         1549 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_294018, whole genome shotgun sequence.
ACCESSION   DASWTX010000680 DASWTX010000000
VERSION     DASWTX010000680.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294018"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1549)
                     /locus_tag="VGD38_10410"
     CDS             complement(<1..>1549)
                     /locus_tag="VGD38_10410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728472.1"
                     /translation="QLLNGEFKDQFLGWISGESVGYVWDAAPAELKISPSMTRTELLA
                     AHREFYTNALARKWRTLFHVETGPMWDKLIPAQSTSSTSFAHALTNWGVKLLGMETAA
                     VMPMTGMRIAFTRGAARQFGGAFLYYHAPNFGDTATTFTKTQNFAGPDFFYHSRYGPS
                     MGPSLSWYRKSYFLYYMAGASAIYLEQGGDQFFKPGPGEHPFQLNPLGRITDEFIRFA
                     EKHPDRGVPYTPIAFVLDPAHGFEMTDYPQWPFEVSQIDRGDRALRELFGVAYYPGLV
                     VEGEPAIADRQPFVSAVFGDIFDVVTTENKNFDGYRAVVLGGKAAWDKSLDEYVRNGG
                     TLVMNSAQIRGISESVLGVRLTNATAEADTARCSSPGEDAPELNGQLFRYEKVELKGA
                     TTLIAAANGDPLVTVNKVGKGTVVFSALGDLLGVDERVTPFAAHMLAHVFADATAVQV
                     RGDVEYLINRTNNSWIVTLLNNNGVYKTQQGMAQVDRNAYVNVSINLRGEKIHSASDW
                     ISDAALKV"
BASE COUNT          351 a          504 c          388 g          306 t
ORIGIN      
        1 gactttcagc gcggcgtcgc tgatccagtc gctggcgctg tgaatcttct cgccgcgcaa
       61 attgatcgag acgttgacgt aggcgttacg atcgacctgg gccatgcctt gttgggtttt
      121 gtagacgccg ttgttgttga gcagcgtcac aatccaactg ttgttcgtgc gattgatcag
      181 gtactcgaca tcaccacgca cctgcaccgc cgtggcgtcg gcgaagacgt gcgccagcat
      241 gtgcgcagcg aacggcgtaa cacgctcgtc gacgccaagc agatccccca acgccgagaa
      301 cacgaccgtt cccttcccga ccttattcac cgtcacgagc ggatcgccat tcgcagccgc
      361 gatcaacgtc gtcgcgcctt tcagttcgac tttctcgtaa cgaaacaact ggccgttaag
      421 ctccggagca tcttctccgg gcgacgaaca acgtgctgta tctgcctctg ccgttgcgtt
      481 cgtaagccgc acaccaagca ccgactctga aatacctcgg atctgcgctg aattcattac
      541 gagggtccca ccgttgcgaa cgtattcatc caggctttta tcccacgccg ctttgccacc
      601 caacacgact gcacgataac catcaaagtt cttattctct gtggtcacca catcaaaaat
      661 gtcaccaaac accgctgaca caaacggctg tcgatccgca atggccggct caccctcaac
      721 caccaacccc ggataataag caactccaaa caactccctt agcgcgcgat cgccgcgatc
      781 gatctgcgac acttcaaacg gccactgcgg ataatccgtc atctcaaacc catgcgccgg
      841 atcgagcaca aacgcgatgg gcgtatacgg cactccacga tcgggatgct tctccgcaaa
      901 ccgtatgaac tcatccgtaa tgcgcccaag cggattcagt tggaacggat gctcacccgg
      961 cccgggtttg aaaaactgat cgccgccctg ttcgagatag atcgccgacg cccccgccat
     1021 gtagtaaaga aagtaactct tccgatacca cgacagcgac ggccccatgc ttggcccata
     1081 acgcgagtga taaaagaaat caggcccggc aaagttctgc gttttggtaa acgtggtggc
     1141 cgtgtcgcca aagttcggcg cgtggtaata aagaaaagcg ccgccaaact gccgcgccgc
     1201 accgcgcgtg aaagcgatgc gcattcccgt catcggcatc actgcggcgg tctccatgcc
     1261 gagcaacttc acgccccaat ttgtcagcgc atgcgcaaac gaagtgctcg acgtcgactg
     1321 cgcggggatc agcttgtccc acatcggacc ggtctcgacg tgaaacagcg tgcgccactt
     1381 gcgcgctaac gcgttcgtgt aaaactcgcg atgcgcagcc agcaattcgg tgcgcgtcat
     1441 cgacggcgaa atcttcagtt ccgccggcgc ggcgtcccac acgtagccaa cgctctcgcc
     1501 cgagatccaa ccgagaaact gatctttgaa ctcgccgttg agaagctgc
//
LOCUS       DASWTX010000681         1594 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_96927, whole genome shotgun sequence.
ACCESSION   DASWTX010000681 DASWTX010000000
VERSION     DASWTX010000681.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1594
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96927"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(234..>1594)
                     /locus_tag="VGD38_10415"
     CDS             complement(234..>1594)
                     /locus_tag="VGD38_10415"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HEY0728473.1"
                     /translation="ERGISLERTEQRGQELAEHRPDAFDAYLHAVRPEDLATIIYTSG
                     TTGEPKGVMLTHNNFMSNVISISKGLPIGPTDVALSVLPLSHIFERDGFYVFIYCGVS
                     VYYSASFDQVAENLREVSPTVMTAVPRLFEKVYHKIIKKGMAETGIKKKIFMQSLEVG
                     QRYGELKDKGKWISPQLALKQKLASKLVFSKWRAGVGGRLRYFVSGGAPLAPALSYAY
                     LAAGIPILQGYGATESCIVCANRPGNNKVGSIGIPFEGIEIKIAEDGEILIRGENVMR
                     GYYGQPEATDAVLKDGWLHTGDVGRMDKEGRLYITDRKKDLFKVSNGKYVAPQLIESL
                     LKESEFVSQVVVVGAGRKQPAALIVPDWENLNEALAEAGEKSAPKEREALSQYPPAIK
                     IVQRDIANLTAALTDYERIRRVALLPDEFTIDGGELTPTLKVKRNVIDDRYGALIDEL
                     YS"
BASE COUNT          322 a          499 c          426 g          347 t
ORIGIN      
        1 ttcagaccca acctactacc aatctcttag tagcgggtaa tcccaccaac gcagttggtg
       61 gatcgttcag acccgacctc ccactttcca agaggtgagt gtaggtaggg gtattaagta
      121 ccaccaactc cgttggtggg attgatcgct ccttgagtga gtgtaggtag ggtatgaaag
      181 ggaccaccaa cttcgttggt gggattccag cgccacagaa gttcccgtgg gccttagctg
      241 tagagttcgt cgatcaacgc gccgtagcgg tcgtcgatga cgttgcgctt tacttttagc
      301 gtgggggtta gttcgccgcc gtcgatggtg aactcatccg ggagcagagc gacgcgacgg
      361 atgcgctcgt agtccgtcag cgccgcggtc aggttcgcga tgtcgcgctg cacgatcttg
      421 atcgcgggcg gatactggct cagcgcttct cgctccttcg gtgcggactt ctcgcccgct
      481 tccgccagcg cttcgttgag gttttcccag tcaggcacga tcagcgccgc cggctgtttc
      541 cgtccggcgc cgacaaccac gacctggcta acaaactcgc tctccttcaa caaactctcg
      601 atcagttgcg gcgcaacata cttcccgttc gacaccttga acaaatcctt cttccgatcc
      661 gtgatgtaaa gccggccctc cttgtccata cgaccgacgt cgccggtgtg aagccagccg
      721 tctttcaaaa cagcatcagt cgcttccggc tgcccgtagt aaccgcgcat cacgttctcg
      781 ccacggatca aaatctctcc atcctccgcg atcttgatct cgatcccttc aaacggaatg
      841 ccgatagatc caaccttgtt gttgcccggc cggttcgcac agacgatgca cgactcggtc
      901 gcgccgtaac cctgaagaat cggaatcccc gccgccaaat acgcgtacga caaagccggc
      961 gcgagtggcg cgcctcccga aacgaaatac cgcaaacgcc cgccgacacc cgcgcgccac
     1021 ttcgaaaaca cgagcttgct cgcgagcttc tgtttgagcg ccaactgcgg cgagatccac
     1081 ttgcccttat ctttcagttc gccgtaacgc tggcccacct cgagcgactg catgaagatc
     1141 ttcttcttga tgcccgtctc ggccatgcct ttcttgatga tcttgtgata gaccttctca
     1201 aacaggcgcg gcacggccgt catcaccgtc ggcgaaacct cgcgcaggtt ctcggccact
     1261 tggtcgaacg aagcggagta atagaccgac acgccgcaat agatgaacac ataaaaaccg
     1321 tcgcgttcga agatgtgcga caacggcaac accgacagcg ccacgtccgt tggcccaatc
     1381 ggcaaaccct tcgagatcga gatcacgttt gacatgaagt tgttgtgcgt caacatcacg
     1441 ccttttggtt cgccggtcgt gcccgaggtg tagatgatcg tggcgagatc ttccggtctg
     1501 acggcgtgca ggtaagcgtc aaaagcgtcg ggccgatgtt cggcaagttc ctggccgcgc
     1561 tgttccgtgc gttcgagcga gataccgcgc tcga
//
LOCUS       DASWTX010000682         1711 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_96931, whole genome shotgun sequence.
ACCESSION   DASWTX010000682 DASWTX010000000
VERSION     DASWTX010000682.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1711
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96931"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..495
                     /locus_tag="VGD38_10420"
     CDS             <1..495
                     /locus_tag="VGD38_10420"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEY0728474.1"
                     /translation="FVNALPARVRLPLDGQVVPWLRDVQKQQAEARRFEFCSLVRIQG
                     WSEVPRTQPLFESVVIFQNFPVMASIPESAGVQVVGVSLVERSNLPLAFVVEPGAQFL
                     FRVIYMANRFDDSTVDRILENFQRILVELATKPDALLSTIFSEVDNERQSLIDSFNQS
                     LATL"
     gene            518..>1711
                     /gene="asnB"
                     /locus_tag="VGD38_10425"
     CDS             518..>1711
                     /gene="asnB"
                     /locus_tag="VGD38_10425"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HEY0728475.1"
                     /translation="MCGIVGYVDLNRAGRVEERILDEMANALIHRGPDSRGYFVEPNA
                     ALGTRRLRIIDLETGDQPLFNEDRSLVLSCNGEIFNYRELTADLEKKGHKFRTRTDVE
                     VLVHLYEEQGVGFLNKLNAQFAFAIHDRRDGTLFLARDQFGICPLFYTVVDGFLIFAS
                     EIKAILKHPSVPREVNLTGLDQVLSLPGAISPQTLFRNIYSLPSGHYLHVRNGDVAVR
                     EYWDLDYPQVSEASDGRPERYYAETLRERLEQSVRYRLQADVPVGFFLSGGLDSSLIA
                     AMIRRVSPDVQRHSFSISFNDERLCEAKYQRLVSESVGSIHHEIPFDDADIALRLREA
                     VYHSECPLKETYNTASLALSSETRQTGVTVVLNGEGSDELFAGYVGYRFDKGRTGNGR
                     GQDLDT"
BASE COUNT          355 a          471 c          496 g          389 t
ORIGIN      
        1 tttgtcaacg ctttacccgc gcgagttcgt ttgccgctcg atggtcaagt cgtgccgtgg
       61 ctcagagacg tgcaaaaaca acaagccgaa gcccggcgtt tcgagttctg ctcgttggtt
      121 cgtatccagg gctggagcga agtgccgcgc acgcaaccgc tgtttgagag cgtagtaatt
      181 ttccagaatt ttccggtgat ggcttcgata ccggaatcgg cgggggtaca ggtggttggc
      241 gtcagtttgg tcgagagaag caatctcccg ttggcgttcg tggtggagcc cggagcgcag
      301 ttcctcttca gggtaatcta catggctaac aggttcgacg actccacggt ggatcgaatc
      361 ctggagaact ttcaacgaat cctcgtcgag ctcgcgacca agcccgacgc attgctttcg
      421 accatcttct ctgaagttga caacgagcga cagtcactaa tcgacagctt caatcaaagt
      481 ctcgccactc tctgactctc ccggaagttt taaaaagatg tgcggcatag ttggttacgt
      541 tgacctgaat cgcgccgggc gcgtcgagga acgcattctc gacgagatgg cgaatgctct
      601 cattcatcgc ggcccggatt cgcgcggtta cttcgtagag ccgaacgcag ccctcggcac
      661 gcgccgcttg cgaatcatag atctcgaaac aggcgatcaa ccgttgttca atgaggaccg
      721 gtcactcgtt ctgagctgca acggcgagat tttcaactac cgcgagctga cggctgacct
      781 ggaaaagaag gggcacaagt ttcgcacccg cacggacgtc gaggtcctgg tccatctata
      841 cgaagagcag ggcgtgggct ttctcaacaa gctgaatgcg cagtttgcgt ttgccattca
      901 cgatcgccgt gacggcacgc tcttcctggc gcgggaccag tttggcattt gcccgctttt
      961 ctacacggtt gttgacggtt tcctgatctt cgcctcggag atcaaggcga ttctcaagca
     1021 cccgagtgtg ccgcgtgaag taaacctgac cggcctggac caggtgcttt cgttgccggg
     1081 cgcgatcagt ccgcaaactc tgtttcgcaa tatctacagc ctgccgagtg gccactacct
     1141 gcatgtcagg aatggtgacg tggcggtacg ggaatactgg gatttggatt acccgcaggt
     1201 gagcgaggcg agtgatggcc ggcccgagcg ctactacgcg gagactctgc gcgagcgtct
     1261 cgaacaatcc gtcaggtaca ggcttcaggc agacgttccg gtcggtttct tcctgagcgg
     1321 tggtttggat tcgtcattga ttgccgcaat gatccggcgc gtatcacctg acgtgcaacg
     1381 ccattcgttc tcgatcagct tcaacgacga aagattgtgc gaggcgaagt atcaacgcct
     1441 cgtttcggaa tcggtcggct cgattcatca cgaaattcct ttcgacgatg ccgatatcgc
     1501 gttgcggctc agagaagctg tttatcactc ggaatgtccg ctaaaggaaa cctacaacac
     1561 ggcgtcgctc gcgctctcga gcgaaacacg gcaaaccggc gtgaccgtag ttcttaacgg
     1621 cgagggttcc gatgaactgt ttgccggtta cgtcggctac aggttcgaca aagggcgtac
     1681 gggcaacggc cgcggtcagg atctcgacac c
//
LOCUS       DASWTX010000683         2409 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_161905, whole genome shotgun sequence.
ACCESSION   DASWTX010000683 DASWTX010000000
VERSION     DASWTX010000683.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2409)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2409)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2409
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161905"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..389
                     /locus_tag="VGD38_10430"
     CDS             <1..389
                     /locus_tag="VGD38_10430"
                     /inference="COORDINATES: protein motif:HMM:NF019339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728476.1"
                     /translation="AGNTTTVPKVPADALVPFEHLTAGNIEKAIEGYRQIKKEKPDNA
                     AVTEARINGLGYRFLREKKLPEALAYFKLNVEFYPKSSNVYDSLGEAYMANGDKELAI
                     ANYKKSLELNPKNTNATEALKKLTTQ"
     gene            386..1543
                     /locus_tag="VGD38_10435"
     CDS             386..1543
                     /locus_tag="VGD38_10435"
                     /inference="COORDINATES: protein motif:HMM:NF044863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728477.1"
                     /translation="MITTVPTYQAASAAAPEIEAHFKRHHAEARRAGEDGLAPRPDAQ
                     SIAAIIDATFWASFRPAEGRFPKISLAYLPPDAAGQPWMFERPLPLTASVLRKLAPAV
                     ERPEIHLGVWTFDNELRVWGATRTIPSFCFVLEDVEPGLLVVKHRRLDGFGKYANVAV
                     LIGETVKIIDEQGTSLPDCPSLLKALLAFTAAATNGPHHSLNVLVQLAASMRAHGHGG
                     SLLVVPTGDERWRESIAQPILYSVAPSFSSLHDLVRNEVDVDHEDRRQWESAMRRAVD
                     TIGGLTAVDGALVINDQYEVLAFGAKIRRHDLSFPVDKWVITEPVVGNVGVVVQPTEH
                     GGTRHLSAAQFVYDQRNTLALVASQDGRFTVFAWSPCEEMVHAHRVESLLM"
     gene            1633..>2409
                     /locus_tag="VGD38_10440"
     CDS             1633..>2409
                     /locus_tag="VGD38_10440"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY0728478.1"
                     /translation="MPLTWSETKNVRWKVPIPGRGWSSPVIQGDRIWLTTATEEGRSL
                     RAIAVDVNTGAIQQNVEVFRLKSPKLMNDKNSFASPTPVIDDGRVYLHFGAYGTACIT
                     QTGEIVWKTKLEYDNGQHGPGGSPIVYDDLLIVSCDGIESQYVVALDKATGKVRWKKT
                     REGYQAYTTPLVVNLPEGDQVISPGAFRAIAYEPRTGKEIWHVKYGEGFSNVPRPVYG
                     NGLVFICTGFQQASLLAVRTDGRGDVTKSKVSWRLDRGVSL"
BASE COUNT          488 a          656 c          781 g          484 t
ORIGIN      
        1 ccgccggcaa caccaccaca gtgccgaaag tgccggcaga cgcccttgtc cctttcgagc
       61 atctaacggc gggcaacatc gaaaaggcga tcgaaggtta ccgccagatc aagaaagaaa
      121 aacccgacaa cgcagccgtg accgaggcgc gtatcaacgg tctgggctat cgatttctgc
      181 gcgagaagaa gttgccggaa gcgctcgcgt atttcaagct gaacgtcgag ttttatccga
      241 agtcgtcgaa tgtttatgac agtctcggcg aagcgtacat ggcgaacggc gacaaagagc
      301 tcgcgatcgc gaactacaaa aagtcgctcg aactgaaccc gaagaacacg aacgccacgg
      361 aggcgttgaa gaagttgact acgcaatgat tactactgtt ccaacatacc aggcggcgag
      421 cgcggcggcg cccgagatcg aagcgcactt caaacgacac catgccgagg cgcggcgcgc
      481 gggcgaggac ggtctcgcgc cgcggcccga cgcgcagtcg atagcggcca tcatcgacgc
      541 gacgttctgg gccagttttc gaccggcaga aggccgcttt ccgaagatct cgctggcgta
      601 tctgccgccc gacgccgcgg gtcagccgtg gatgttcgag cgtccgctgc cgttgaccgc
      661 gagcgttctc agaaaactgg cgccggcagt cgaacggccg gagattcatc ttggcgtgtg
      721 gacgtttgat aacgagctgc gcgtgtgggg cgcgacgcgc acgattccga gtttctgctt
      781 cgtgcttgaa gacgtcgaac cgggtctgct ggttgtaaag catcgccggc tcgacgggtt
      841 tggtaagtac gcgaacgtcg cggtgcttat cggcgagacg gtaaagatca tcgacgagca
      901 aggcactagt ttgcctgact gtccgtcgtt gttgaaagcg ctgctggcgt tcacggcggc
      961 ggcgactaat ggtccacatc attcgctgaa cgtgctggtc caactggcag cttcgatgcg
     1021 ggcgcatggt cacggtggga gtttgcttgt cgtgccgacc ggtgacgaac gctggcgcga
     1081 gtcgattgcg caaccgattc tttactcggt ggcgccgtcg ttttcgtcgc tgcacgacct
     1141 ggtgcgtaat gaggttgatg tggatcacga agatcgccgg cagtgggaga gtgcgatgcg
     1201 gcgcgccgtg gatacgattg gcgggctcac ggcggttgac ggcgcgctgg tgatcaacga
     1261 tcagtatgag gtgctcgcgt ttggcgcgaa gatccggcgt cacgatctga gttttccggt
     1321 cgataagtgg gtgatcaccg aacctgttgt gggaaatgtc ggcgtcgtgg ttcaaccgac
     1381 ggagcatggc ggaacgagac acttgtcggc ggcgcaattc gtctacgatc agcgcaacac
     1441 gctcgcgctc gtggcgtcgc aggacgggcg cttcaccgtc tttgcgtggt cgccgtgtga
     1501 agagatggtc cacgcccatc gcgtcgagtc gttgttgatg tgatcttcct gcttttaatc
     1561 tgtctaatat ctcttccgga ctggcctcaa tttcgcgggc cttcaggcca aggcatctct
     1621 gacgaacgca acttgccact cacgtggagc gagacgaaaa acgttcgctg gaaggtcccg
     1681 attcccggcc gcggctggtc ttcgccagtg attcagggcg atcgtatttg gttgacgacg
     1741 gctactgaag aaggacgttc gttgcgcgcg atcgccgtcg acgtgaacac cggcgcgatt
     1801 caacagaacg tcgaggtctt tcggctcaag tcgccgaaat tgatgaatga caagaatagt
     1861 ttcgcgtcgc cgacgcccgt gatcgacgac ggccgcgtct acctgcactt cggcgcctac
     1921 ggcacggcgt gcatcacgca aacgggcgag atcgtttgga agacgaagct cgagtacgac
     1981 aacggccagc atggaccagg cggatcgccg atcgtctacg acgacctgct gatcgtgagt
     2041 tgcgacggca tcgagtcgca gtacgtggtc gcgctcgaca aagcgacggg caaagttcgt
     2101 tggaagaaaa cgcgtgaggg atatcaggcg tacacgacgc cgctcgtcgt gaacttgcct
     2161 gaaggcgatc aggtgatcag tcccggcgcg tttcgcgcga tcgcgtacga accgcgcacc
     2221 gggaaagaaa tctggcacgt gaagtatggc gagggatttt cgaatgtgcc gcggcctgtt
     2281 tatggaaacg gactggtgtt tatctgcacc ggatttcaac aggcttcgct gcttgcggtg
     2341 cggacggacg ggcgcggtga cgtgacgaag tcgaaggtct cgtggcgttt ggatcgcggt
     2401 gtgtcactg
//
LOCUS       DASWTX010000684         2029 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_161912, whole genome shotgun sequence.
ACCESSION   DASWTX010000684 DASWTX010000000
VERSION     DASWTX010000684.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2029
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161912"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..393
                     /locus_tag="VGD38_10445"
     CDS             <1..393
                     /locus_tag="VGD38_10445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728479.1"
                     /translation="GSIEQPDHKLFGPHVIDGLSDTLDALAAAASSLGATRQRTEVVT
                     VRQLRDEIGACRELLNREAGNDLSAWFVLIDALGRHTAEIDDIVNALAHEHGETNFKE
                     LRWWVGAFRRQVGNQQRDAETVTTWGRL"
     gene            400..>2029
                     /locus_tag="VGD38_10450"
     CDS             400..>2029
                     /locus_tag="VGD38_10450"
                     /inference="COORDINATES: protein motif:HMM:NF021596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HEY0728480.1"
                     /translation="MKQSIGVNGDWNALLKLLEKVPALADVPQLCDNALVQLAAFQNY
                     DTPRLAQVAARLTKALEQAAGASNDLLSRLSRIARTCDQFADAMDFSVLFDVERQLFT
                     VGYNVTASRADDSYYDLLATEARLASFVGIAKGDVPQQHWFRMGRAFTKVDGGRALLS
                     WTGTMFEYLMPLLVMRNYRQTLLGETYETVVQRQIEYGQERGVPWGISEAAYNVRDLQ
                     LNYQYGPFGVPGLGLKRGLVEDLVVAPYATMLAAAVDVDAALRNLRRLRNEGALGPFG
                     FYESIDYTPERVPDGQKSVLIRAFMTHHQGMSLVALTNLLHDSVIEKRFHSDPTVQAT
                     ELLLQERIPVGVPAAHPRAEEVLTGRVVQTMPGMITRVYESADTSTPRTQLLSNGAYN
                     VMLTTAGSGYSQCEEFAVTRWREDVTRDNWGAFIYLRDVRSGTVWSAGHQPVKRRAQG
                     YTVAFSEDKADFRRIDAGISTRTEVVVSAEDNAEVRRISLTNHSTRTREIELTSYAEV
                     MLNAPGADAAHQAFSNLFIETEFIAGENAILAHRR"
BASE COUNT          410 a          642 c          606 g          371 t
ORIGIN      
        1 ggttcgatcg aacaacccga ccacaagttg tttggcccgc acgttatcga tggactcagc
       61 gacaccctcg acgcactcgc agccgcagcg tccagcctcg gcgctacgcg ccaacgcacg
      121 gaagtcgtaa ccgtgcggca gttgcgcgac gagatcggcg cgtgtcgcga gttgctcaac
      181 cgcgaggctg gcaacgacct gtcggcgtgg tttgtcctca tcgacgcact cggacgccac
      241 accgccgaga tcgacgacat cgttaacgcg ctcgcacacg aacacggcga gacaaacttc
      301 aaggaactcc gctggtgggt cggcgcgttc agacgccagg tcggcaatca acagcgtgat
      361 gcggagacgg tcacgacgtg gggccgtttg tgaccggagt tgaaacagtc gatcggcgtg
      421 aacggcgatt ggaacgcgtt gctcaagctg ctggaaaaag tgccggcgct cgctgacgtg
      481 ccgcaactct gcgacaacgc gctcgtccag ctcgccgctt ttcaaaatta cgacacgcca
      541 aggctcgctc aggtcgccgc gcgactcacg aaagctctcg aacaagcggc cggcgcctcg
      601 aacgatctgc tctcgcgtct gagtcgcatc gcgcgcacgt gcgatcaatt cgcagacgcg
      661 atggacttct cggttctctt cgacgtcgag cgacagctgt tcaccgtcgg ttacaacgtg
      721 accgcgtcgc gcgccgacga ttcgtattac gacctgctcg cgaccgaagc acgactcgcc
      781 agcttcgtcg gcatcgcgaa aggcgacgtg ccgcaacaac actggttccg gatgggacgc
      841 gcgtttacga aagtcgatgg cggacgcgcg ctcttgtcgt ggactggcac gatgttcgag
      901 tacctgatgc cgctgctcgt catgcgcaac tatcgccaga ctctgctcgg cgagacttac
      961 gaaaccgttg tccaacgcca gatcgaatac ggccaggaac gcggcgttcc gtggggtatt
     1021 tccgaagccg cttacaacgt tcgcgatctc cagctcaatt accagtacgg accattcggc
     1081 gtgcccggtc tcggtctgaa acgcggcctg gtagaggatc tcgtcgtggc gccttacgcc
     1141 accatgctgg ccgcggccgt cgatgtagat gcggcgctgc gcaatttgcg acggctgcga
     1201 aacgagggcg cgctcggtcc cttcggtttt tacgaatcga tcgactacac acccgaacgc
     1261 gtgcccgatg gtcagaagtc agtgctgatt cgtgccttca tgactcacca ccagggcatg
     1321 agcctggtcg cgttaacaaa cctgctccac gactcggtaa tcgaaaaacg ttttcacagc
     1381 gatccgaccg tacaagcaac tgagttgctg ttgcaggagc gaatcccggt tggtgttcct
     1441 gccgctcatc cgcgcgccga agaggtcctg accggacgcg tggtccaaac catgccgggc
     1501 atgatcacgc gcgtttacga atccgcggat acaagcacgc cgcgcacaca gttgttatca
     1561 aacggcgcct acaacgtgat gctgaccacg gccggttcgg gctattcgca atgcgaagag
     1621 tttgccgtca cgcgctggcg cgaggatgtc acgcgcgaca attggggcgc tttcatctac
     1681 ctgcgcgacg tgcgcagcgg caccgtctgg tccgccggac atcagccggt gaaacggcgt
     1741 gcgcagggat acacagtcgc gttttccgaa gacaaagccg actttcggcg catcgacgcg
     1801 ggcatctcga cgcgcacgga agtggttgtt tccgcggagg acaacgccga ggtgcggcgc
     1861 atttcgttga ccaaccactc gacgcgtacg cgcgagatcg agttgacgag ttacgccgaa
     1921 gtcatgctca acgcaccggg cgcagacgca gcgcaccagg cattcagcaa cctatttatc
     1981 gagaccgagt tcatcgccgg cgagaacgcg atcctcgcgc accgccggc
//
LOCUS       DASWTX010000685         1573 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_381026, whole genome shotgun sequence.
ACCESSION   DASWTX010000685 DASWTX010000000
VERSION     DASWTX010000685.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381026"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..849)
                     /locus_tag="VGD38_10455"
     CDS             complement(<1..849)
                     /locus_tag="VGD38_10455"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY0728481.1"
                     /translation="MNLSEPFIRRPVMTAVLTLSVILFGVMSYFQLPVNDLPVVDYPV
                     IQVTVGYPGASPDTIANNIATPLERQFMQINGLEVVTSSSTQGVATFTLQFSLDKNID
                     AAATDVQTAISQATGSLPADLPSPPTYSKSNPTDQPLMYIAMTSDSVTSGQLYDYAST
                     NVGQRLSILPGVSQVNVYGTKSAIRIKANPAAMWARDISIDDLNNAIKNGTSYTGAGQ
                     LDSSSGTAILRPQGQLETAEQYANLIVGGTNGAPIYLRDVATVKDSVQDERVNMRFWV
                     RGRTVPS"
     gene            complement(846..>1573)
                     /locus_tag="VGD38_10460"
     CDS             complement(846..>1573)
                     /locus_tag="VGD38_10460"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEY0728482.1"
                     /translation="TIKVDNAAIETAKVSLSYCYIHSPIDGRAGQRLVDIGNVVNPGG
                     PGGGDSSTAVPNTALLVIERLDPIYADFTISQSNLTAVQQQMRAGTLQAEVRIPEAAD
                     DPVLGQLTFVDNAVQNETGQVTLRATLPNPEHRFWPGRFVNVRLVLSTVQSAVLVPVS
                     APQMSANGSYVYVVKPDSTAEQRQVSLGQRQGDLIVVEKGVQAGERVVTDGQLGVTPN
                     GKVAVEQPREANSPAVAGDGSKS"
BASE COUNT          274 a          449 c          500 g          350 t
ORIGIN      
        1 tgatggaacc gtgcggccgc gcacccagaa acgcatgttc acgcgttcgt cctgcaccga
       61 gtctttcacg gttgcgacgt cgcgcaagta aatcggcgcg ccgtttgtgc cgccgacgat
      121 caggttcgcg tactgttccg cggtttcgag ttggccttgt ggcctgagaa tcgcggtgcc
      181 ggaagagctg tctagctggc ccgcgccggt gtagctcgtg ccgttcttga tcgcgttgtt
      241 caggtcgtcg atcgagatgt cgcgcgccca catcgcggcg gggttcgcct tgatgcggat
      301 cgcggactta gtgccgtaga cgttgacctg cgaaacaccc ggcagaatgc tgagacgctg
      361 gcccacgttg gtgctggcgt agtcgtacaa ctgtcccgac gtgaccgagt cgctggtcat
      421 cgcgatgtac atcagcggct gatcggtcgg gttcgacttc gagtaagtcg gtggcgacgg
      481 cagatccgcg ggcagactgc cggtggcttg cgagatcgcc gtttgcacgt cagtcgcggc
      541 cgcgtcgatg ttcttgtcga gcgagaattg cagcgtgaaa gtcgcaacgc cctgcgtgct
      601 tgaagacgtc acgacttcca gtccgttgat ctgcatgaac tggcgctcga gcggcgtggc
      661 gatgttgttg gcgatcgtgt cgggactcgc gccgggataa ccgacggtga cctgaatcac
      721 gggataatca actaccggaa gatcgttgac cggcagttgg aagtaactca tcacgccgaa
      781 caggatcact gacagcgtta acaccgcggt cattaccggc cgccgaatga atggttctga
      841 cagattcatg acttcgatcc gtctcctgcg actgccgggc tgtttgcttc acgcggttgt
      901 tcgaccgcta ccttgccgtt gggtgtgacg ccgagttgtc cgtcggttac gacacgctct
      961 ccggcctgaa cgcctttttc aaccacgatt agatcgccct gacgttggcc cagcgacacc
     1021 tgccgctgtt cggcggtcga atcgggtttg accacgtaaa cgtaagatcc gtttgccgac
     1081 atctgcggcg ctgatacggg aaccagcacc gcgctttgca ccgtgctcaa aacgagacgc
     1141 acgttgacaa agcgtccggg ccagaaacga tgttctggat tcggcagcgt ggcccgcagt
     1201 gtgacttggc cggtttcgtt ctgcacggcg ttgtcgacga atgttagttg gcccaaaacc
     1261 ggatcgtcgg ccgcttcggg aatgcgaact tccgcttgca atgtgccggc gcgcatttgc
     1321 tgttgcacgg cggtgagatt ggattgcgag atcgtgaaat cggcgtagat cggatcgagc
     1381 cgttcgatca ccagcaaagc ggtgttcgga actgcggtgc tcgagtcgcc gccgcctggc
     1441 ccgccgggat tcacgacgtt gccgatgtcg acgagccgct gtccggcgcg gccgtcgatt
     1501 ggcgagtgaa tgtagcagta gctcagcgaa accttcgcag tttcgatcgc ggcgttgtcg
     1561 actttgatcg tct
//
LOCUS       DASWTX010000686         2767 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_161950, whole genome shotgun sequence.
ACCESSION   DASWTX010000686 DASWTX010000000
VERSION     DASWTX010000686.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2767)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2767)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2767
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161950"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(68..526)
                     /locus_tag="VGD38_10465"
     CDS             complement(68..526)
                     /locus_tag="VGD38_10465"
                     /inference="COORDINATES: protein motif:HMM:TIGR02246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgcJ/EcaC family oxidoreductase"
                     /protein_id="HEY0728483.1"
                     /translation="MKLLVTFGLIAIFVVNASAQSDRAADEAALREIVKQMETGWNTK
                     SGATFAKAFAEDADYVIINGQYIKGRTVIERAHQQIFDTIYKDTTITLTVQQIRFLRP
                     DVAVVHVKGQRTSPIKELVQDAMLTLFLTKEKQGWTIAAFQNTAVTPPGR"
     gene            596..1186
                     /locus_tag="VGD38_10470"
     CDS             596..1186
                     /locus_tag="VGD38_10470"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0728484.1"
                     /translation="MREEVTQLLAAWGKGDKSALDRLLPLVHAELRRIARRQMSQEHD
                     GHTLQATALVNEAYLRLAGQQGYEWQNRAHFFAVCAQVMRHVLIDHARAHARDKRGGG
                     AVQVSLEEAAALAGWSPEHFLALDEALHFLETVDPQKGKIVELRYFGGLSIEETAEVL
                     NISPRTVRREWQRSKAWLYRLMTEGLTDETRLLAKS"
     gene            1158..>2767
                     /locus_tag="VGD38_10475"
     CDS             1158..>2767
                     /locus_tag="VGD38_10475"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY0728485.1"
                     /translation="MKPDYWRKVDELFDAALEHDPKDRASFLDRACGADRELRREVEK
                     MLAFDRQAEDFIQTDVFHVAAKLITGPSEKPSKRPVSFTADSIDNARFIPGDVLSDRY
                     RIVGLLGRGGMGEVYRADDLKLKQPVALKFLPESLTANGPALARFYREVSVARQISHR
                     HVCRVYDVAEFEGQHFISMEFVRGEELSSLLKRIGRLPQAKAIDVARQLCAGLAAVHE
                     RGVLHRDLKPANIMLDEHGDVRITDFGIAALAEELDQREAMAGTPAYMSPEQLEGHEL
                     TNKSDIYSLGLVLYEVFTGKRAFEASTLQDLIQLRRSDTTPTSLGELVPELDPLVERV
                     IFRCLERDTAKRPASALQVAAALPGGDPLAAALAAGETPSPEMVAAAPKQGGLRPAVA
                     ASLFASVIVLAALLCFLPRNMMLFHKVPLEKSPEVLRDRATELVKKFGYTAPPGDSAF
                     GISVDRQYLGHIHENDPSPTRWQQLSTGQPAAIYFWYRQSPSAFNVSNGGFVDEDEPA
                     RDLPGMTTMTLDTLGRLRSFYAVPPSNAS"
BASE COUNT          557 a          848 c          811 g          551 t
ORIGIN      
        1 atcgcgcagc ttacggcgtc aagcgcccac cttgcgacgg agagcgatag cagaggcaaa
       61 gacaccgtta ccgtcccggc ggggtcacgg cggtgttttg gaaggcggcg atggtccagc
      121 cttgtttttc tttggtcagg aagagcgtga gcattgcgtc ctggaccagt tccttgatgg
      181 ggctcgtgcg ttggcctttg acgtggacca ccgcgacgtc ggggcgcagg aaacggatct
      241 gttggacggt cagggtgatg gttgtgtcct tgtagatcgt gtcgaagatt tgctggtgcg
      301 ctcgctcgat gaccgtgcgg cctttgatgt attggccgtt gatgatcaca taatccgcgt
      361 cttcggcaaa cgctttcgcg aatgtcgcgc cgctttttgt gttccaaccc gtctccatct
      421 gtttgacgat ctcgcgcaac gccgcctcgt cagcagcgcg gtcgctctgc gcgctggcgt
      481 taacaacgaa aatggcgata aggccgaaag tgactagtag cttcatttta tttcctccac
      541 ctaagtaagc gacgaattga agaaaaagcg gccacggatg tagaattcgc ggactttgcg
      601 ggaagaagtc acccaactac tcgccgcttg gggtaaaggc gacaagtctg cgctcgaccg
      661 gctgcttccc ctcgtccacg ctgaattgcg ccgcatcgcg cgccgccaga tgagccagga
      721 acatgacggc cacacgctgc aagcaactgc gctggtcaac gaagcttact tgagacttgc
      781 cggtcagcaa ggatatgaat ggcagaaccg cgcgcacttc tttgccgtat gtgcgcaagt
      841 gatgcgtcac gtgttgatcg atcacgcgcg tgcccacgca cgcgacaaac gcggcggcgg
      901 cgcggtccag gtttcactcg aagaggccgc ggcactcgcg ggctggtcgc ccgaacactt
      961 tctcgcgctc gacgaagcac tgcactttct cgaaaccgtc gatccgcaga aaggcaagat
     1021 cgtcgaactg cgctacttcg gcggcttgag catcgaggaa acagccgagg tcttgaacat
     1081 ctcaccacgg acagtgcggc gcgagtggca gcgctcgaaa gcgtggctct accgcctgat
     1141 gactgaagga ctcaccgatg aaacccgatt actggcgaaa agttgacgaa ctcttcgacg
     1201 ccgcactcga gcacgatccc aaagatcgcg cctcattcct cgatcgagcc tgcggcgccg
     1261 atcgcgagct gcgccgcgaa gtcgaaaaga tgctcgcctt cgatcgacag gccgaggact
     1321 tcatccaaac agacgttttc cacgtcgccg caaaattgat taccggacct tcggaaaaac
     1381 catcaaagcg acccgtatcg ttcaccgctg attcgatcga caacgcgcgg ttcatccccg
     1441 gcgacgtgct ttcagatcgt tatcgcatcg tcggactgct gggccgcggc ggcatgggcg
     1501 aggtctaccg cgccgacgat ctcaaactca agcaacccgt cgcgctaaag tttctgccgg
     1561 agtcgctcac cgcaaacggc ccggcgctcg cgcgcttcta tcgtgaagtc agcgtcgcgc
     1621 gccagatctc gcatcgtcac gtttgccgtg tttacgacgt cgccgagttt gaaggtcaac
     1681 atttcatctc gatggagttc gtgcgtggcg aagagctctc gtcgttgctc aagcgcatcg
     1741 gacgcctgcc gcaggccaaa gccatcgacg tcgcgcggca actctgcgcc ggtctcgcgg
     1801 ccgtacacga gcgcggcgtg ctgcatcgcg atctgaaacc cgcgaacatc atgctcgacg
     1861 agcatggcga cgtgcgcatc accgacttcg gcatcgcggc actcgcggaa gagctggacc
     1921 aacgcgaggc gatggccggc acgcccgcgt acatgtcgcc ggaacaactc gaaggccacg
     1981 aactcacgaa caagagcgac atctactcgc tcggtctcgt gctgtacgaa gtgttcaccg
     2041 gcaaacgagc cttcgaagcg tcaacgttgc aggacttgat tcaactgcga cgcagcgata
     2101 caacgccgac gagtctcgga gaactcgttc ccgaactcga tccgctggtc gagcgcgtca
     2161 tctttcgttg tctcgaacga gacacggcga agcgccccgc ttcagcgttg caagtcgcgg
     2221 ccgcgttgcc cggcggcgat ccactcgcag cggcgctcgc ggctggcgaa acaccatctc
     2281 cggagatggt cgccgccgcg ccaaaacaag gcggcttgag accggccgtc gcggcgtcgc
     2341 tgtttgcatc cgtcatcgtg cttgccgcgc tgctctgctt tctcccgcgc aacatgatgt
     2401 tgtttcacaa agttccgctc gaaaagtcgc ctgaagtttt gcgcgatcgc gcgaccgagc
     2461 tcgtgaagaa gtttggctac acagcgccgc cgggtgattc cgcctttggc atctcggtcg
     2521 acaggcaata tctcggtcac attcacgaaa acgatccgtc gcccacgcgt tggcagcaac
     2581 tgagcacagg ccaaccggcg gcgatctatt tttggtaccg gcagagtccg agtgctttca
     2641 acgtttcgaa tggcggcttc gtggacgagg atgagcctgc gcgagatttg ccgggcatga
     2701 cgaccatgac gctcgacaca ttaggcaggt tgcgttcgtt ctacgcggtc ccgccaagca
     2761 atgcttc
//
LOCUS       DASWTX010000687         4226 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_381034, whole genome shotgun sequence.
ACCESSION   DASWTX010000687 DASWTX010000000
VERSION     DASWTX010000687.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4226
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381034"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..203
                     /locus_tag="VGD38_10480"
     CDS             <1..203
                     /locus_tag="VGD38_10480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728486.1"
                     /translation="AGVVLGVHEATASRRLTRIQTDLRKRVSQILVDERGWTKAEAER
                     SFAEVAQHLETDLEALIKEKSF"
     gene            256..1467
                     /locus_tag="VGD38_10485"
     CDS             256..1467
                     /locus_tag="VGD38_10485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728487.1"
                     /translation="MRQETNKEIDLLLRRMSRQNGGSLSGGEAHESHLDADEMSSFAQ
                     NALPAAARARYMEHLAECSSCRKLVTELSLSLGATAVAASPVETVVEASGLKKFLASL
                     FSPMVLRYAVPALGLIVVAAIGFVILRQRGQGDFVAQVDTKERSTAPLTASEVPASKS
                     PVAPGLTDTAPAEQPGRVANSKEASSKSGQVSGDAAGSGPAAPAPVTTTPRAEEAPPP
                     PQTGQLPQPTPAPKIAAATESESKKKAGEDEARQKNATIAKAPEPAVTAETTDATVKS
                     AKTNEQARDYNAAPQTGATDRIDESKRESLPIQRRGTFGAATNAGRARAQAEKDDAET
                     RTVSGRRFRKERGIWTDTAYDSSTSTVNVARGSEQFRALVADEPEIKKIAEQLDGEVI
                     VVWKGRAYRIR"
     gene            1483..2928
                     /locus_tag="VGD38_10490"
     CDS             1483..2928
                     /locus_tag="VGD38_10490"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family metallopeptidase"
                     /protein_id="HEY0728488.1"
                     /translation="MSLRTNLNRAVVCVALLGLAASSIIATGQTRRPARPASRGLAYP
                     AINSIVRQIDANNIERSIRQLAAFGTRNTLSEQNDPKRGIGAARDWLYAKFLKAAEAS
                     NGRMTVEKQSYEQPKAQRVPEPTIITNVVATLKGSQPEATDRIYVVSGHYDSMCNSPT
                     DAKCDAPGANDDASGTAAVLEMARVMAKFEFDATIVFMAVAGEEQSLLGSTYFAEQAK
                     QKNRNVDAMFTNDIIGNSLGGNGIRNRNTVRVFSEGVPTNETPAEANTRRSVGGENDS
                     PSRQLARFIKETSESLVPQMKVMMVYRRDRYGRGGDHIPFLERGYPAVRFTEVNEDFR
                     HQHQNVRVENGVQYGDLPQFVDFDYVANVARVNAAALAMLAYAPARPTGVTIVSRLSD
                     DTELRWEANKEPDLYGYEIVWRDTAWPTWQGVKSVGKVTSFTLKGMSKDNYFFGVRAV
                     DKEGHRSPVTFPRPVTRQQPANRSTTSSGTP"
     gene            2970..>4226
                     /locus_tag="VGD38_10495"
     CDS             2970..>4226
                     /locus_tag="VGD38_10495"
                     /inference="COORDINATES: protein motif:HMM:NF020390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1800 domain-containing protein"
                     /protein_id="HEY0728489.1"
                     /translation="MKFSKKSLVASLMIAALLATQTLVTFADTPKPAKKSRLTDEQRI
                     IHVLNRLGFGARPGDVERVKSIGLENYINQQLNPEKIADTVAENKVKDLTVLDMSTAE
                     LYAKYPQPGQLLRQLQQRGMLEADLKNPPDPQDEKYRKVLQDSYVQNGLQRPQRIMAE
                     LQASRILRAVYSERQLQEVMVDFWTNHFNVFAGKGADRWLLPAYDRDTIRPNAMGKFS
                     ELLLATAQSPAMLFYLDNFQSVSPDANRGRGMRQNPDAQRPRRGINENYARELMELHT
                     LGVDGGYTQKDVQEVARCFTGWTIFQPRGGGAAVNAIMGTEAARRNAGTFFFNARVHD
                     DGEKTVLGHKIPAGGGFKDGLTVLDILARHPATAKFIATKLVRHFVSDTPPPALVDRV
                     AAAFTKSDGDIRETLKALFFSKEFNSP"
BASE COUNT          954 a         1225 c         1277 g          770 t
ORIGIN      
        1 aggcaggcgt ggttctcggc gtgcatgaag caaccgcgag ccgccgtctg acccggattc
       61 aaacggattt gcgcaagcgt gtcagtcaga tactggtcga tgaacgtggt tggacaaagg
      121 ccgaggccga gcgctcgttt gcggaggtcg cgcaacattt agagacggat ttggaggcgt
      181 taatcaaaga gaagagcttt tgactgcaag gtatccaaat cgttacgttc tctctttggc
      241 agcgccagtt ttgcaatgag acaagaaaca aacaaggaga tcgatctgct gcttcgccgt
      301 atgagccggc agaacggcgg ttctctgtct ggtggcgaag cgcacgaatc gcatctcgat
      361 gcagacgaga tgagttcgtt tgcgcagaac gcgttgcccg cggcggcacg cgcgcgctac
      421 atggaacatc tcgctgagtg ttcgtcgtgc cgaaaactgg ttactgagtt gagcctgtca
      481 ctcggcgcaa ctgccgtggc cgcttcgccg gtcgagacag ttgtcgaggc gagcggattg
      541 aagaagttct tggcgagcct gttctcgccg atggttttgc gttacgcggt tccggcgttg
      601 ggtttgatcg tcgtcgcggc aatcggtttc gtgatcttgc gccagcgagg tcagggagac
      661 tttgtggcgc aagtcgacac gaaggagcga tcgactgcgc cgctcactgc gtccgaagta
      721 cccgcgtcga agtcaccggt tgccccaggt cttaccgaca cggcaccagc tgaacaaccg
      781 ggtcgtgtag ccaactcaaa agaagcctcg tcgaagagcg ggcaagtttc aggtgacgcc
      841 gccggatctg gcccagcggc tccggctcct gtcaccacta ctccccgcgc tgaagaagca
      901 ccgcctccac cgcaaacggg gcagttgcca cagccgacgc ccgcgccaaa aatcgctgcg
      961 gcaactgaaa gcgaaagcaa aaagaaagcg ggtgaagacg aagcgcggca gaagaacgcc
     1021 acaattgcca aggcgccgga gccggcggtg accgccgaaa caacggatgc tacagtcaag
     1081 tccgcgaaaa ctaacgagca ggcgcgtgac tacaacgccg ctccacaaac cggcgccact
     1141 gaccgtatcg atgaaagcaa acgggaatct cttccgattc aacgacgagg cacattcggc
     1201 gccgctacga atgccggacg cgcgcgcgcg caagccgaga aggacgacgc cgagacacgc
     1261 accgtctcag gccgtcggtt ccgaaaagaa cgtggcattt ggaccgacac agcgtatgat
     1321 tcgtcaacct caactgtaaa cgtggctcgc ggctccgaac agttcagagc gctggttgcc
     1381 gacgagccgg aaatcaaaaa gattgccgaa caactcgacg gcgaggtcat cgttgtttgg
     1441 aagggccgcg cctatcggat tcggtaggag aaaaccaatt caatgagcct tcgaacgaat
     1501 ctcaaccgcg cggttgtctg tgttgccctt ctaggtttag ctgcaagttc aatcatcgct
     1561 actggtcaaa cgcgccggcc cgcgaggccg gcgtcacgag gtcttgctta tcccgcaatc
     1621 aacagcatcg ttcgccagat tgacgcgaac aacatcgagc gcagcatccg ccaactcgcc
     1681 gcgttcggca cgcgcaacac attgtccgaa cagaacgatc ccaaacgcgg catcggcgcc
     1741 gcgcgcgact ggctctacgc caagtttctc aaagccgctg aagcttccaa cggccgcatg
     1801 accgtcgaga agcagagtta cgaacagccg aaagcgcaac gtgtgcctga gccgacgatc
     1861 atcaccaacg tcgtcgcgac gctgaaagga tcgcaacctg aagcgaccga tcgcatttac
     1921 gtcgtcagtg gtcactacga ttcgatgtgc aacagtccga ccgacgcgaa gtgcgatgcg
     1981 cccggcgcga acgacgacgc ttcgggcacg gccgccgtgc tcgagatggc gcgtgtgatg
     2041 gcgaagtttg agtttgacgc gacgatcgtt ttcatggccg tcgccggtga agagcagagc
     2101 ctgctcggtt cgacgtactt cgccgaacaa gcgaaacaga aaaaccggaa cgtcgacgcg
     2161 atgttcacca acgacatcat cggcaactcg ctcggcggca acggcattcg caatcgcaac
     2221 acagtgcgag tgttctcaga aggcgtgccg acgaatgaga ccccggcgga agcaaacacg
     2281 cgccgcagtg tcggcgggga aaacgattca ccctcgcgtc agctcgcgcg cttcatcaaa
     2341 gagacttcag aatcgctcgt gccgcagatg aaagtgatga tggtctatcg ccgcgatcgt
     2401 tacggccgcg gcggcgatca cattccgttt ctcgagcgtg gttatcccgc ggtgcgtttc
     2461 accgaagtga acgaagactt ccggcatcaa catcagaatg tgcgcgttga gaatggcgtg
     2521 cagtacggtg acctgccgca gtttgtcgac tttgattacg ttgcgaatgt cgcgcgcgtg
     2581 aacgcggcgg cgttggcgat gctggcgtac gcgccggcgc gtcccactgg cgtgaccatc
     2641 gtttcgcggc tttcggatga cacggaactg cgttgggaag cgaacaagga accggatctt
     2701 tacggctacg aaatcgtttg gcgcgacacg gcgtggccta cgtggcaggg agtgaagtcc
     2761 gtaggaaagg tcacgagctt cacgttgaaa gggatgtcga aggacaacta ctttttcggc
     2821 gtgcgggcgg tggacaagga aggtcaccgc agtccggtga cgtttccgag accagtcacg
     2881 cggcagcagc cggcgaatcg cagcacgacg tcgagcggca ctccgtaacc tttctcgact
     2941 aaccggcgcg gtgcggcgtc taagttgaca tgaaattctc aaagaagagc ctggttgcct
     3001 cgttgatgat cgcggcgctg ctcgcaacgc agacgctggt cacattcgcc gacacgccaa
     3061 aacccgcgaa aaaatcccgt cttaccgacg agcagcggat cattcacgtc ttgaatcgtc
     3121 tcggtttcgg cgcgcgtccg ggcgacgtcg aacgcgtgaa gtcgatcggc ctcgagaact
     3181 acatcaacca gcaactgaat cccgagaaga tcgccgacac ggttgcggaa aacaaggtca
     3241 aggatttgac cgtgctggac atgagcaccg cggagcttta cgcgaaatac ccgcagcctg
     3301 gccagttgtt gcggcagctt cagcagcgcg gcatgctgga ggcggattta aagaatcctc
     3361 cagacccaca ggatgaaaag taccgcaaag tccttcagga ctcttacgtg caaaatggac
     3421 tccagcgtcc gcaacgcatc atggccgaac tgcaagcgtc gcgaatcctg cgcgcggttt
     3481 acagcgagcg acagcttcag gaagtgatgg ttgatttttg gaccaatcac ttcaacgtct
     3541 tcgccggcaa gggcgccgat cgctggctgc tcccggctta cgatcgcgac acgattcggc
     3601 cgaatgcgat gggcaagttt tctgaactgt tgttggcgac cgcgcagagt ccggcgatgc
     3661 ttttctatct cgacaatttt cagagcgtca gtccggatgc gaatcgcggc cgtggaatgc
     3721 gtcagaaccc ggacgcgcaa cggcctcgac gcggcatcaa cgaaaactac gcgcgcgagt
     3781 tgatggagct gcacacgctc ggagtcgatg gcggctacac gcagaaagac gtgcaggaag
     3841 tagcgcgctg ttttacgggt tggaccatct tccagccgcg cggtggcggc gcggcggtga
     3901 acgcgatcat gggtacggaa gcagcgcgcc gcaatgccgg gacgttcttc ttcaacgctc
     3961 gcgtgcacga cgacggcgag aagacggtgt tgggccacaa gattcccgcg ggcggcggat
     4021 tcaaagacgg tctgacggtg ctggatattc tcgcgcgtca ccccgccacg gcgaagttca
     4081 tcgcgacgaa actcgtgcgt cacttcgttt ccgacacacc accgccggcg ctggtcgatc
     4141 gtgtcgcggc tgcattcacg aagagcgacg gcgacatccg cgaaacactg aaagccctct
     4201 tcttctcgaa agagttcaac tcgccg
//
LOCUS       DASWTX010000688         2985 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_403292, whole genome shotgun sequence.
ACCESSION   DASWTX010000688 DASWTX010000000
VERSION     DASWTX010000688.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2985)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2985)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2985
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_403292"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1579)
                     /gene="priA"
                     /locus_tag="VGD38_10500"
     CDS             complement(<1..1579)
                     /gene="priA"
                     /locus_tag="VGD38_10500"
                     /inference="COORDINATES: protein motif:HMM:TIGR00595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005658 - alpha DNA polymerase:primase
                     complex [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEY0728490.1"
                     /translation="MFTGAETSLQTKTSRFVEVAVPVHVAQTFTYRLTPEQSIHAKPG
                     ARIMGPFGRKMRTGYIVALHDELPSGIDLEESEIKEAERIVDEVPVCTPEILQLAKWV
                     AEYYASPLGEVLKATLPPGINPRPQTARNSVVKAKLRKFVRLKNADAEKITEKQKQVL
                     LALEQRGPLPLKELSAATVASLERKGLVEVFDEAVRRDPLANSVSRPVEDFTLTSAQS
                     AVLEKIKEQVETETYGAFLLHGVTGSGKTEIYIRAMRAALERGRSAMMLVPEIALTPV
                     FSQRLRSHFGDRVAIFHSSLQRGERFDEWTRVKNGEARVVIGTRSAVFAPVQNLGLIV
                     VDEEHESTYRQQESPYNNARDTAIVRAQTDSATDELGSATPSLESFHNARAGKYRLLT
                     LPERIAARPMATARIVDMRSVFMRHAKPRVFSDELLEAIQETHERGEQSIILLNRRGY
                     SSFILCRSCGETIQCPNCDVTLTYHRSERVIVCHYCNHRKGVPKVCPSCGKKYIYYVG
                     EGTEQLEEMLTQLFPALR"
     gene            complement(1589..2323)
                     /locus_tag="VGD38_10505"
     CDS             complement(1589..2323)
                     /locus_tag="VGD38_10505"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: protein motif:HMM:TIGR00758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEY0728491.1"
                     /translation="MKPLPEVIEQTKKQLEHLRVLGVEGVRLEPGAANESKQQQGFSL
                     FDDFKPAPNKLEPSAETFEQIHAEIGNCTRCPLHVDRTHVVHTEGNRKARLMFVGEAP
                     GADEDAQARPFVGRAGQLLTKIIEAIGMKREEVLIGNVNRCRPPGNRAPMPDEAATCK
                     PFLEREIAVAQPEIIVVLGNTAMKNLLDTREGITRARGRFHDYKGIKVMPTFHPAYLL
                     RDPSKKRETWEDLKKVRDYLDQTAKT"
     gene            complement(2320..>2985)
                     /gene="coaBC"
                     /locus_tag="VGD38_10510"
     CDS             complement(2320..>2985)
                     /gene="coaBC"
                     /locus_tag="VGD38_10510"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015939 - pantothenate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HEY0728492.1"
                     /translation="AGRKKDLVGERFLITVGATREEIDPVRFISNRSSGRMGFALAEA
                     ALRRGGDVTVVAGITTVDPPAGAKIVRALSAEEMDQAVARESKQASVFIGAAAIADYR
                     PSQRAEQKIKKTEDSVTLTLERTPDVLANVAAARTIGLLVVGFAAETENVIANAREKL
                     RNKKLDAIVANDVTRSDSGFDSRTNAITIITAQNDQAVELPTLSKSEAANRILDVIVS
                     LRS"
BASE COUNT          580 a          900 c          824 g          681 t
ORIGIN      
        1 cacgcagagc agggaaaagt tgcgtcaaca tctcttccaa ttgttcggtg ccttcgccga
       61 cgtagtagat gtatttcttg ccgcacgacg ggcaaacctt cggcacgccc ttgcgatgat
      121 tgcagtagtg acaaacgatc acgcgctcgc tgcgatgata cgtgagcgtc acgtcgcagt
      181 tgggacattg gatcgtttca ccacacgagc ggcaaagaat aaaacttgaa tagccgcgtc
      241 gattcagcag gatgatcgat tgctcgccac gttcgtgagt ttcctgaatc gcttcgagca
      301 gttcgtccga gaagacacgc ggcttggcgt gacgcatgaa cacgctgcgc atgtcgacga
      361 ttcgggccgt ggccatcggc cgcgccgcga ttcgttccgg caacgtcagt aagcgatatt
      421 ttccggcacg cgcgttgtga aacgattcga gcgacggcgt ggccgagccg agctcgtccg
      481 tggccgagtc tgtttgcgca cgcacgatcg cggtgtcgcg tgcgttgtta tacggcgact
      541 cctgttgtcg ataagtcgat tcgtgttcct cgtcgacgac aatcagcccg aggttctgca
      601 ctggcgcgaa gactgccgaa cgcgtgccga tcacgacgcg cgcttcgccg tttttaacgc
      661 gcgtccattc gtcgaaacgt tcgccgcgtt gcagcgacga atgaaagatc gcgacgcggt
      721 cgccgaagtg actgcgcaag cgctgcgaga acacaggcgt gagcgcaatt tcgggaacga
      781 gcatcatcgc cgatcgtccg cgttcgagcg ccgctcgcat cgcacgaatg tagatctcgg
      841 tcttgccgct gccggttacg ccgtgaagca gaaacgcgcc gtaggtttca gtctcgacct
      901 gctccttgat cttttcgagc acagcgcttt gcgcggacgt caacgtaaag tcttcgaccg
      961 ggcgcgaaac ggagttagcg agtggatcac gtcttactgc ctcgtcgaag acctcaacca
     1021 atcccttcct ttcaagtgaa gcgacagtgg cggcgctcag ttcctttagc ggcaaaggtc
     1081 ccctttgttc caacgccaac agaacctgtt tctgcttctc ggtgatcttt tcggcgtccg
     1141 cattcttgag ccgtacaaac tttcgcaact tggctttcac aaccgaattg cgcgccgttt
     1201 gcggccgcgg atttatcccc ggcggcaacg tcgccttgag cacttcaccg agcggcgacg
     1261 cgtagtattc cgcgacccac tttgcgagct gcaagatctc aggtgtgcaa acaggaacct
     1321 catccacgat ccgctcggct tccttgatct cagattcttc aagatcgatg ccggaaggaa
     1381 gttcgtcgtg aagcgcgacg atataacccg tccgcatttt gcgtccgaac gggcccatga
     1441 tgcgcgcgcc gggttttgcg tgaatgctct gttcaggtgt gagccggtac gtgaacgtct
     1501 gggccacgtg tacgggcact gcgacttcca caaagcgtga ggttttggtc tgtaacgagg
     1561 tttcggctcc ggtgaacaca gatggattct acgtcttcgc cgtctgatcg aggtaatccc
     1621 gaaccttctt caagtcttcc cacgtctcgc gcttcttcga agggtcgcgc agcaggtagg
     1681 ccggatgaaa cgtcggcatc accttgatgc ctttgtaatc gtgaaaacgg ccgcgcgcgc
     1741 gtgtgatgcc ttcgcgcgtg tcgagcaggt tcttcatcgc cgtgttgccg agcacgacga
     1801 tgatttccgg ttgggccacc gcgatctcgc gttcgagaaa cggcttgcac gtagcggcct
     1861 cgtcgggcat gggcgcgcga ttgccgggcg ggcggcagcg attgacgtta ccgatcaaca
     1921 cctcttcacg cttcatcccg atcgcttcga tgatcttcgt gagcaactgc ccggcgcgtc
     1981 cgacaaacgg ccgtgcctgc gcgtcttcat ccgcgcccgg cgcctcgccg acaaacatca
     2041 gccgcgcctt gcgattaccc tccgtatgga ccacgtgcgt gcgatcgacg tgcagcggac
     2101 aacgcgtgca gttcccgatc tcggcatgaa tctgttcgaa cgtttccgct gagggctcta
     2161 atttatttgg cgccggtttg aaatcatcaa acaaagaaaa tccctgctgc tgtttacttt
     2221 catttgcagc acccggctct aaacgaacac cctcgacccc tagcacgcgc aagtgctcga
     2281 gttgcttctt tgtttgttcg atgacttcag gaagtggttt catgatcgga gactaacgat
     2341 aacatccaag attcggtttg ccgcttcgct cttggaaagc gtcggcaatt caaccgcttg
     2401 atcgttctga gcggtgatga tggtaatcgc gttagtcctc gaatcaaaac cggaatcgct
     2461 gcgcgtcacg tcgttggcca cgatcgcgtc cagtttttta ttgcgcagct tttcgcgcgc
     2521 gttggcgatc acgttttccg tttctgccgc aaagccgacg acgagcaatc cgatcgtgcg
     2581 cgcagcggcg acgttcgcca aaacatcagg cgtgcgttcg agcgtgagcg tcacagagtc
     2641 ttcagtcttc tttatcttct gctcggctct ctgagacgga cgataatcag caatcgccgc
     2701 cgcgccgata aaaaccgaag cctgcttgct ctcgcgcgca accgcctggt ccatttcttc
     2761 agccgacaac gcgcgaacga tcttcgcgcc ggcaggcgga tccacggtgg tgattcccgc
     2821 gaccacagtc acgtcaccgc cgcgtctcaa cgccgcttcg gcaagagcga accccattcg
     2881 tcccgacgaa cgattcgaaa taaatcgcac cggatcgatc tcttcgcgcg tcgcgccaac
     2941 cgtgatcaga aaacgttcgc caaccagatc ttttttccgt cccgc
//
LOCUS       DASWTX010000689         4300 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_381051, whole genome shotgun sequence.
ACCESSION   DASWTX010000689 DASWTX010000000
VERSION     DASWTX010000689.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4300)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4300)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4300
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381051"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..829
                     /locus_tag="VGD38_10515"
     CDS             <1..829
                     /locus_tag="VGD38_10515"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY0728493.1"
                     /translation="IEGYTQAMTENYGGDLGERPERWRKIKGGTDLLPKAFARRLEGK
                     IIYGAQVVKIEQDAKTARVVFSKTGAQQTLTADAVLCTIPFSVLRKVELPALSSRKRD
                     AIKRTHYDAVSRVYLQTKNRFWEERGLNGFAFTRGAIEVWHPTWDQPGPRGILKTYAR
                     PGEAERITKLKENQRIESTLKQVDEIFSGLRANFERGVTKCWLDDEWSRGAWAFVAFS
                     DFAAAVAPEGRIYFAGEHLSAWVSWMQGALSSGLRAVKEIDEAQYPHSKTASVYFRY"
     gene            complement(843..1400)
                     /locus_tag="VGD38_10520"
     CDS             complement(843..1400)
                     /locus_tag="VGD38_10520"
                     /inference="COORDINATES: protein motif:HMM:NF017496.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Uma2 family endonuclease"
                     /protein_id="HEY0728494.1"
                     /translation="MSIKAEATIEDLYKVEGKAELVNGEIVHMSPTGGIPHYAAREIT
                     RSLALYEEATGRGYAIGDNTAFVVNLPHRKSFSPDAAFYTGKLTMKFGEGAPIFAVEV
                     RSEGDYGPRAERQMAQKRADYFAAGTLVVWDVDLDSEDVVRVYRATAPNDPTVYRRSQ
                     LAEAEPALPGWTMPVDKLFLKEREG"
     gene            complement(1468..>4300)
                     /locus_tag="VGD38_10525"
     CDS             complement(1468..>4300)
                     /locus_tag="VGD38_10525"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004197 - cysteine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HEY0728495.1"
                     /translation="SGRELTQLKVPNSGVFVSQADAFMAFSDDGKRIATSGFDTDTII
                     WETETAKRVSNLTGRTNMAYNVAFSADGTQLTSGGRTRWDLRTGSGLRIVPAPASSEK
                     TYGVPSPDGRVVAVMTPNTGVVSLVETPSGRQLFTLTPSGGAGVVQKMRFSADSNVLA
                     VVYAAIEQQGQGPIGPTSYLRGSQVKLWDVKNGRELRSVAADELPNEAEFSADGRVVA
                     TIASMGQVVLWDAQSGTRLHELRSSPMASFTPPQIKPGQMPTIPNMNEIVGMMTNVMG
                     SMAAGTMGRTVTSVAFSPDGKTVVTGGFESKANIDLAAMMSGATSGKRPKGSKTPDPQ
                     DLMKDLKVEAVGQVQIWDVASGREIGKLTGHGRAVGKVAFSRDGKLLATGGTDNTIKI
                     WDLAAKRELATLTGHTANIESLDFHPDGRLLATAGEDGSTFLWDTKTGEHLLTLISLD
                     DGGEWMVVTPQGLFDGTPVSWNQILWRYNQETFNVAPIEWFFNEFYYPGLLSDVFAGK
                     RPRVSEDVSKKDRRQPIVKLSLTGPQGPDAAIASRTIRVKIDITDAPADKDNPQGTGA
                     RDVRLFRNGSLVKVWHGDVLKGQPSVSLEEEITVTAGPNRLVAYAFNRDNVKSKDAPL
                     VFAGAESLKRKGTAYIIAVGVNEYENPQYNLKYATADARDFGEEVRKRQTQLGEFERV
                     EVVQLLDKDATKANILAAIKRLAGEPGPPSLKTGPLDALKRVEPEDTVIIYYAGHGTA
                     QAQRFYLIPHDLGYTGDRTKLTGEGLKTMLAHSISDLELEAAVEGIDAGHLLLIIDAC
                     NSGQALEAEEKRRGPMNSKGLAQLAYEKGMYILTAAQSFQAALEAAQLGHGYLTYALV
                     EEGLKSPIADTQPKDGLLIAREWLNFATERVPQMQQEKMTQGRGVGLGIAFTEGEASV
                     ADPEKRSVQRPRVFYRRELEASPLVIAKP"
BASE COUNT          860 a         1358 c         1161 g          921 t
ORIGIN      
        1 gatcgaaggt tatacccaag ccatgaccga gaattacggg ggagacttgg gtgagcgacc
       61 cgagcgctgg cggaagatca aaggcggaac cgatctgttg ccgaaggcat ttgcgcgacg
      121 gctcgaaggc aagatcatct atggcgcaca ggtcgtgaag atcgaacagg atgcgaagac
      181 ggcgcgagtc gttttctcaa aaacgggcgc gcagcagacg ctgactgcag acgctgtgct
      241 ctgcacgatt ccgttttccg tgttgcgcaa ggttgagttg ccggcgctgt cgtcgcgaaa
      301 gcgcgacgcg atcaaacgca cgcattacga cgctgtgtcg cgcgtgtacc tgcaaacgaa
      361 gaatcgcttc tgggaagaac gcggactgaa cggcttcgct ttcacgcgcg gcgcgattga
      421 ggtttggcac ccgacgtggg accagcctgg accacgcggg atattgaaga cgtatgcgcg
      481 gcccggcgaa gcggaacgca tcacgaagct gaaagagaac cagcgcatcg agtcaacgct
      541 gaaacaagtc gacgagatct tttccggact gcgggcgaac ttcgaacgcg gggtgacgaa
      601 gtgttggctg gatgacgagt ggtcgcgcgg tgcgtgggcg tttgttgcgt tcagcgattt
      661 cgcagcggcg gtcgcgcctg agggacggat atattttgcg ggcgaacacc tctcggcgtg
      721 ggtctcgtgg atgcaaggcg ccctctcctc cggcctgcgc gccgtcaaag agatcgacga
      781 agcccagtac ccacactcaa aaaccgcaag cgtttacttt cgctactgac gcgtcgaggt
      841 tcttagcctt cgcgctcttt tagaaagagt ttgtcaacgg gcatggtcca acccggcagc
      901 gcaggttcgg cttccgccaa ttggcttcga cggtaaaccg tcggatcatt cggagcggtc
      961 gcacggtaga cgcgcaccac gtcttcgctg tccagatcta catcccagac aaccagtgtt
     1021 ccggcagcga aatagtcggc gcgcttttga gccatctgcc gttctgcacg cggaccgtaa
     1081 tcgccttcgc tgcgaacctc taccgcaaag atcggcgcac cttcgccaaa cttcatcgta
     1141 agtttaccgg tgtaaaaagc cgcatccggg ctgaacgatt tgcgatgagg aaggtttacg
     1201 acaaaagccg tgttgtctcc gattgcgtag ccacgtcctg ttgcttcttc atataacgcg
     1261 agcgatctgg tgatttcccg ggcggcatag tgaggtattc ctcccgtagg tgacatatgt
     1321 acgatttctc cgttgacgag ctcagccttg ccctcgacct tgtagagatc ttcaattgtg
     1381 gcttcggctt ttatgctcat agacagttgt gagtatttaa tttacttcct tgcccgcatg
     1441 ataccacgcg tcgcgagaaa cgcaacgtca cggtttcgcg atcactaacg gagaagcttc
     1501 cagctcgcgc cggtagaaaa ctcgcgggcg ttggacactg cgtttctcag gatcagcaac
     1561 gcttgcttcg ccttccgtaa acgcaattcc caacccgaca ccacgtccct gcgtcatctt
     1621 ttcctgctgc atctgtggca cgcgttcggt cgcgaagttg agccactcac gcgcgatcag
     1681 cagcccgtct ttcggttggg tatccgcaat cggactcttc aatccctctt caaccaacgc
     1741 gtacgtcaaa tatccgtggc cgagttgcgc ggcctccagc gcggcctgaa aactctgcgc
     1801 cgccgttagg atgtacatgc ccttttcata agcaagctgg gccaagcctt tcgaattcat
     1861 cgggccacgg cgcttctctt cagcttccaa cgcctgacct gaattacacg cgtcgatgat
     1921 cagcaacaag tgtcccgcat caatgccttc aaccgcagcc tccaactcga ggtcggaaat
     1981 actgtgcgcg agcatcgtct tcaaaccttc cccggtcaac ttcgtacggt cgcccgtgta
     2041 accgaggtcg tgcgggatca aatagaaacg ttgcgcctgc gcagtgccgt gtcccgcgta
     2101 gtaaatgatc acagtgtctt ccggctccac tcgcttcaac gcatcgagcg gcccggtttt
     2161 caacgacggc ggaccgggct caccggccag tcgcttgatc gcggcgagaa tgttcgcctt
     2221 cgtcgcgtct ttgtcgagca gttggaccac ctcaacacgc tcaaactcgc ctagctgcgt
     2281 ttgccgcttg cgcacctctt caccaaaatc gcgcgcatcc gcggtcgcat acttcaagtt
     2341 gtattgagga ttctcatact cattcacgcc aacggcgatg atgtaggccg tgcctttgcg
     2401 cttcagactc tccgcgcccg caaacacgag cggcgcatcc ttgctcttca cgttgtcgcg
     2461 attgaacgca taagccacga gccggttcgg cccggccgta accgtgatct cttcttcaag
     2521 cgacacggac ggctgacctt tcagcacgtc gccatgccaa accttcacca gcgagccgtt
     2581 gcgaaacaga cgcacgtcgc gcgcgcccgt gccttgcgga ttgtctttgt cagcgggtgc
     2641 gtcagtgata tcgatcttta cgcgaatcgt gcgtgaagca atggcggcgt ccggcccctg
     2701 tggaccagtc aatgacaact tcacgatcgg ttggcgccga tccttcttcg aaacgtcctc
     2761 cgaaacgcgc ggacgcttgc ccgcaaacac gtccgacaac aaacccggat aataaaactc
     2821 gttgaagaac cactcgatcg gcgcgacgtt gaaagtctcc tggttgtagc gccaaagaat
     2881 ctggttccac gaaacgggcg tgccgtcaaa caacccctgc ggcgtgacga ccatccactc
     2941 gccgccgtcg tcgagcgaga tcagcgtcaa caaatgctcg ccagtcttcg tgtcccacaa
     3001 gaaggtgctg ccgtcttcac ccgccgtagc gagcaagcgt ccgtcaggat ggaagtcgag
     3061 cgattcgata ttggcggtgt ggccggtcaa cgtcgcgagc tcacgcttcg cggcgaggtc
     3121 ccagatcttg atcgtgttgt cagtgccgcc ggttgcgagc agtttgccgt cacgactaaa
     3181 cgctaccttg ccgacagcgc gcccgtgtcc cgtcaacttc ccaatctcgc ggcccgaagc
     3241 aacatcccaa atctgcacct gaccaacagc ttccactttc agatccttca tcaagtcctg
     3301 cggatcgggc gtcttcgaac ctttcgggcg ctttccactg gtcgctccgc tcatcatcgc
     3361 cgcgagatcg atgttggcct tcgactcaaa cccacccgtg accaccgtct tgccgtcagg
     3421 actaaacgca accgaggtca cggtgcggcc catcgttccc gcagccatcg agcccatcac
     3481 gttcgtcatc atcccgacga tctcgttcat gttcggtatc gtcggcatct gtcccggctt
     3541 gatctgcggt ggcgtgaacg aggccatcgg cgagcttctc agctcgtgca atctggttcc
     3601 ggactgcgcg tcccaaagca cgacctggcc catcgatgca atcgtcgcga ccacgcgccc
     3661 gtcagcacta aactcggctt cgttcggcag ttcatccgct gccaccgaac gcagttctcg
     3721 tccgttcttc acgtcccaaa gcttcacctg gctgccgcgc aaatacgacg tcggaccaat
     3781 tggaccttgt ccctgctgtt cgatcgcggc gtaaactacc gccagcacgt tgctgtcggc
     3841 actaaaccgc atcttctgca caacgccggc accacctgac ggcgtgagcg taaacaactg
     3901 ccggccactc ggcgtttcaa ccagcgaaac cacaccggtg tttggcgtca tcaccgctac
     3961 cacgcgacca tccgggctcg gcacgccgta cgttttctct gacgacgccg gcgccggaac
     4021 gatccgcaaa ccgctgccgg tgcgcagatc ccaacgcgtc cttccgccgg acgtaagctg
     4081 tgttccgtcc gcgctgaacg caacgttgta agccatgttc gtgcggccgg tgagattcga
     4141 gacgcgcttc gcggtttcgg tttcccaaat aatcgtgtcc gtgtcgaagc cgctcgtcgc
     4201 gattcgtttt ccgtcgtcac tgaacgccat gaacgcgtcc gcctgcgaca caaacacgcc
     4261 gctgtttgga actttcaact gcgttaactc gcggccgctc
//
LOCUS       DASWTX010000690         4538 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_97103, whole genome shotgun sequence.
ACCESSION   DASWTX010000690 DASWTX010000000
VERSION     DASWTX010000690.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4538
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97103"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2342
                     /locus_tag="VGD38_10530"
     CDS             <1..2342
                     /locus_tag="VGD38_10530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728496.1"
                     /translation="TTGCFPGNRIPQNQLSPAGLAIVKLFPDPTGPGVGDWATTQLQP
                     IDTRQDLIRGDLTITDKMNLMVRYINEKWTHLAASNNFWGDSPYPTLSSDWAQPSHSF
                     AVKLSNTISSRAVNEFQFSIAGNDIIITTNPATQALQDEIASKFPTVFPHDNPVGGTA
                     PSLFWGAGGYANIWHQAPWANREDLYIWKDDFSLIVGSHDLKFGGLFAHNFKDEPGVG
                     AGGGNQQLTIQGCGEQTGHCIADLLLRDTVLLNYTEIADTEIANGRWRDYEFYVNDTW
                     KLHPRVTLTLGLRYSQFPTAWEEDNRISNFFPNLYNGVDFNTGLVTAEEAVAMGLPRS
                     TVNTYKQGWQPRFGLAWDIFGTGKTSARIGFGRYMSRSNVIEDLLRLTGNPPWTTTVS
                     AGSGWNGAGTTLANCPTCRSLDTINPGLINNVAGVNPNAGFAAIDPNFRPPESSQWNL
                     TVAHEILPNTVFEASYIGNHGLHIWRRNVNRNDIPLGPCKGSACDGSTDSARLQIARA
                     GLNVPSPLTGVVQNQGTLIADNRLFRGIGNITTDESNGNSSYHAMQLWLNRRFSDRLA
                     FQAAYTWGHSISDVALTSFTNSTSDPFNFNADRGDADLDRRQTFVGNVVYVLPSAKRW
                     GRAADLALSDWQLNMIASYFGATPIEITTNANTIGTASAVGQRPNYTGAPLYLETSDA
                     TRHLNPAAFARPAPGQMGTLGKGSVRGKPITTVDFSVAKNWRFKERYGIQFRTEFFNL
                     FNHTNFIGYNTDISQPGAFGLLTATQAPREIQLGIKFTF"
     gene            2440..>4538
                     /locus_tag="VGD38_10535"
     CDS             2440..>4538
                     /locus_tag="VGD38_10535"
                     /inference="COORDINATES: protein motif:HMM:NF028228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728497.1"
                     /translation="MYLRSAFLPLLISVFIFQAQGDLFRRHYEAAQRYHQAGNFAAAE
                     AEFKIILAESYLRLGRIYSAQGKYQPAADALKTATSIRADSTEGLVELSIAYFHLGQF
                     SNAIEPLQRALAADAKNAAAHHMLGKSYFMMGEFEKSAEELKTTLKLQPGDYDAEYTL
                     GLAYLKRKDIASAKQLYAGMVQRLGNRPALRVLIGRAYRETGFLPESIEEFKAAIALD
                     PKFPRVHYYLGLTYLYKDGAVRMPDAMEEFKIELAANPEEYFANFYLGILYIMERKWD
                     EAIPLLEKAMRQQPNNPDPYFHLGQAYQGAGKHQQAVEVLQKTIALTPSLDHNDYQVT
                     TAHYRLGQSLIKVGRTSEGEKELQTSAELKSKGFKMDEKKVGAFLSGTPAPNQEGNLV
                     KAEGVVAEPVALDLKTLEKLRLEESLFSKFAAAAHNSIGGLRAQQQDFRGAAAQFAEA
                     ARLNPAQPGLNYNLGLAYYKYEAYKDAIPALENELKVDADNIGIKQLLGLSYFMMQDY
                     AKAASLLEQVIAVKTQDAGLYYPYALSLLKDGKTDAANRAIEQMVLVGGDSPQLHILM
                     SQANYERGDTAKALEELHAALKLDDKVRLAHFYTGLIHLKNGKMDLAASEFESELAVN
                     PNDLQAKYHLGFVALAQQHTERGVKLMREVISERPDFADAYYELGKALLQQGDVPSSV
                     QNLETAAKLKPNQPHVH"
BASE COUNT         1004 a         1338 c         1278 g          918 t
ORIGIN      
        1 acaccactgg ctgcttcccc ggcaatcgca ttccgcaaaa tcaattgagt cccgctggtc
       61 tggcgattgt aaagctcttt cccgatccga ccggaccggg cgtcggtgac tgggccacca
      121 ctcagcttca gccaatcgac acgcgtcagg atctcatccg tggcgacctc accatcactg
      181 acaagatgaa cctgatggtc cgctacatca atgagaagtg gacgcacctg gctgcttcca
      241 acaacttctg gggcgattcc ccgtatccga cgctttcgtc tgactgggcc cagccgagcc
      301 acagttttgc ggtcaagctg tcgaacacca tctcgtcgcg tgcggtgaac gaattccagt
      361 tctcgatcgc cggcaacgac atcatcatca cgaccaaccc ggcaacccag gcgctgcagg
      421 acgagatcgc ttccaagttc ccgacggtct tcccgcacga caatccggtc ggcggcactg
      481 cgccgtcgtt gttctggggc gcgggtggtt acgcaaacat ctggcaccag gcgccgtggg
      541 ccaaccgcga agacctgtac atctggaaag atgacttctc gttgatcgtc ggctcgcacg
      601 acctgaagtt cggcggactc ttcgcccaca acttcaaaga tgagccgggc gtcggcgccg
      661 gtggtggcaa ccagcagttg acgattcagg gttgcggcga acagaccgga cactgcatcg
      721 ccgacctgct gctccgcgac accgttcttc ttaactacac cgagatcgcg gacactgaaa
      781 tcgcgaacgg acgctggcgt gattacgagt tctacgtgaa cgatacgtgg aagctgcacc
      841 cgcgcgttac gttgactctg ggtctgcgct actcgcaatt cccgaccgcc tgggaggaag
      901 ataaccgcat ctccaacttc ttcccgaacc tctacaacgg cgttgatttc aacaccggtt
      961 tggttacggc ggaagaagca gttgcaatgg gtctcccgcg ctccactgtg aatacctaca
     1021 agcagggatg gcagccgcgc ttcggtctcg cctgggacat tttcggcacc ggcaagactt
     1081 cagcaagaat cggcttcggc cgctacatga gccgttcaaa cgtgattgaa gacctgctcc
     1141 gcctgaccgg caatccgcca tggaccacga cggtcagcgc gggttccggt tggaacggcg
     1201 ccggcaccac gttggcgaac tgcccgacct gccgcagtct cgacacgatt aacccgggac
     1261 tcatcaacaa cgtcgcgggt gtgaatccga acgcaggttt cgccgcaatc gatccgaact
     1321 tcaggccgcc cgagagctcc cagtggaacc tgacggttgc gcacgaaatc ttgccgaaca
     1381 ccgtgtttga agcttcgtac atcggcaacc acggtctgca catctggcgc cgcaacgtta
     1441 accgcaacga cattccgctt ggaccatgca aaggcagcgc ttgcgacggc agcaccgatt
     1501 cggcgagatt gcaaatcgct cgcgccggat tgaacgttcc gagcccgctc acgggtgtgg
     1561 ttcagaatca gggtacgttg atagccgaca atcgcctgtt cagaggcatc ggcaacatca
     1621 ccactgacga atcgaacggc aactccagct accatgcgat gcagttgtgg ctgaaccgcc
     1681 gcttcagcga tcgtctcgcg ttccaggctg cttacacctg gggtcactcg atctctgacg
     1741 tagcgctgac gtcgtttaca aactcgacca gcgacccatt caacttcaac gctgacaggg
     1801 gcgacgccga cctcgatcgg cgccagacat ttgtcggcaa cgtcgtttac gtcctgcctt
     1861 cagcgaaacg ttggggccgg gccgcggatc tcgcgctcag cgattggcag ttgaacatga
     1921 tcgcttcgta cttcggtgcg acgccgatcg aaatcaccac caacgcgaac accatcggaa
     1981 cagcgtccgc tgtcggtcaa cgtccgaatt acaccggcgc accgctgtat ctcgagacta
     2041 gcgatgcgac gcggcacctg aacccggcgg cattcgcacg acctgcgcct ggacagatgg
     2101 gcacgctcgg caagggatcg gttcgtggca agccgatcac cacggtcgac ttctcggttg
     2161 cgaagaattg gagattcaag gaacgctatg gcattcagtt ccgcacggag ttcttcaacc
     2221 ttttcaacca cacgaacttt atcggctata acactgacat ttcacaaccc ggcgcgtttg
     2281 gtctcctgac cgcaacgcag gcgccacgtg agattcaact cggtatcaag tttaccttct
     2341 gatatactgc cgtcaggcta aataaggacg aagagttgag cgatccccct caactcttcg
     2401 tctaagtttt ttagagttct atgtcggtca ggggtaacga tgtacctgcg ctcggccttt
     2461 cttcctcttc taatttcagt ctttattttt caggcgcagg gtgatctgtt tcgccgtcac
     2521 tacgaagctg cgcagcgcta tcatcaggcc gggaacttcg ccgccgccga agctgagttc
     2581 aagatcattc ttgccgaatc ttatctgagg cttggccgca tctactccgc gcagggaaag
     2641 taccagcccg ccgccgacgc actgaaaacc gcaacttcaa ttcgtgccga ttcgacggaa
     2701 ggactggtcg agctctcgat cgcttatttc cacctgggcc agttttcgaa cgcgatcgaa
     2761 cccttgcagc gcgcgctcgc tgcggatgcg aagaacgcag cggcgcatca catgctcggc
     2821 aagtcgtatt tcatgatggg cgagtttgaa aaatcggcgg aggagttgaa gacgacgctg
     2881 aagttgcaac ccggcgatta cgatgctgag tacacgctgg gactcgcgta tctgaagcgg
     2941 aaagatatcg cttcggctaa gcagttgtac gcggggatgg tccaacgtct cggcaaccgg
     3001 ccggcgttgc gcgtgctcat cggccgcgct tatcgagaga ctggttttct gccggagtcg
     3061 atcgaggaat tcaaagcggc gattgcgctc gatcctaagt tcccgcgcgt tcattactat
     3121 ctcggtctga cgtatctcta caaagacggc gcggtgcgaa tgccggatgc gatggaggag
     3181 ttcaagatcg agctcgccgc gaatcccgaa gagtatttcg caaacttcta tctcggcatt
     3241 ctttacatca tggagcggaa gtgggacgag gcgattccgt tgctcgagaa ggcaatgcgc
     3301 cagcagccga acaatcccga tccgtatttc cacctgggcc aggcttacca gggcgccggc
     3361 aagcaccagc aggcagtcga ggttttgcag aagacgatcg cgctgacgcc gtcactcgat
     3421 cataacgatt accaggtgac cacggcgcat tatcgtctgg ggcagtcgtt gatcaaagtg
     3481 ggccgcacat ctgaaggtga aaaagagctg caaacgtccg ccgagctgaa gtcgaaaggc
     3541 ttcaagatgg acgagaagaa agtcggcgcg tttctcagtg gcactccggc gcctaatcag
     3601 gaaggtaacc tcgtgaaggc cgaaggcgtt gtcgctgagc ctgtcgcgct ggatttgaag
     3661 acgctcgaaa aactgaggct cgaagagagt ttgttttcga agtttgccgc ggcggcgcac
     3721 aacagtatcg gcggactgcg cgcgcagcag caggactttc gcggcgcggc tgcgcagttt
     3781 gcggaagccg cgcgactgaa tccggcgcag ccgggtctca actacaatct cggtctcgct
     3841 tattacaaat acgaagcgta caaagacgcg attccggcgc tcgaaaatga actcaaggtc
     3901 gatgccgaca acatcgggat caaacagttg ctgggactga gttacttcat gatgcaggac
     3961 tacgcgaaag cggcgtcgct gctcgagcag gtgattgcgg tgaagacgca ggacgcgggt
     4021 ttgtattatc cgtatgcgct ttcgttattg aaggacggaa agactgacgc agccaaccgc
     4081 gcgatcgaac agatggtgct ggtcggcggt gacagtccgc agttgcacat cctgatgagc
     4141 caggcgaact acgagcgcgg cgacaccgcg aaggcgctcg aagaactgca cgccgcgctc
     4201 aagctcgacg acaaagtgcg gctcgcgcac ttttacaccg gcctgattca tttgaagaat
     4261 ggcaagatgg atctcgccgc gagcgagttt gaaagtgaac tcgcagtgaa cccgaacgat
     4321 ctgcaagcga agtatcatct cgggtttgtc gcgttggccc aacaacatac tgagcgcggc
     4381 gtgaagctga tgcgcgaggt cattagcgaa cgtcctgact ttgccgacgc ttactacgag
     4441 ctcggcaaag cgttgttgca gcagggcgac gttccgagca gcgtacaaaa cctcgagacc
     4501 gccgctaagc tcaaacccaa tcagccgcac gtgcatta
//
LOCUS       DASWTX010000691         3639 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_315023, whole genome shotgun sequence.
ACCESSION   DASWTX010000691 DASWTX010000000
VERSION     DASWTX010000691.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3639
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_315023"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..187)
                     /locus_tag="VGD38_10540"
     CDS             complement(<1..187)
                     /locus_tag="VGD38_10540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728498.1"
                     /translation="MRQTHRNLFLLAALLLLTATVQAQDAKPPATPQKIVEQGIAIEF
                     TADPLVQNATKIRAAEDV"
     gene            complement(369..>3639)
                     /locus_tag="VGD38_10545"
     CDS             complement(369..>3639)
                     /locus_tag="VGD38_10545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728499.1"
                     /translation="TFISVENRLDFSKELVTAVAQSLSETGTAQELAAMVYHEQRLHA
                     SFRPDGTPANFVLNGLPRKPGAPFADPCIDSNGVAVGTPRTYKAAAFQLDIKLNKAGW
                     HFPQSRILSLWADVAPTIAGTRPPEPFFFRANTNDCITFYHTNLVPGVYEQDDFQIRT
                     PTDIIGQHIHLVKFDVTSSDGSGNGFNYEDGTFSPDEVIERIHAIRKQNGCVGKDAGD
                     IRDGTFTCPKAKAHPYFGTLGAQTTVQRWFADDVLNNNRVDRTLRTVFTHDHFGPSSH
                     QQTGLYAGLVIEPKGSIWKNPETGVTMGTRAVDGGPTSWQANIIETDPSLSHREFLFE
                     FADYQLAYQAGAGVDVNGRPIADPLRVIGPPIVNEIGLPFIVENGLVCPGGVPAPCPE
                     AVSSKDPGTMSVNYRNEPVPLRVRNPGTNTQATGAAGDFSKVYKSNILRADPLFNVQP
                     TFYPALTKGVQPGDPFTPLLRAYENDKVQIRILVGAHEETHYLTINGHKWLHQPGTPQ
                     DPLAVNNSGYRNSQVAGISEHFEFLTGKESILGNRPFIDYLYQNSASVDGQWNGVWGI
                     MRIYNGRRGLLTDLMALPNNTEGAAQLSTNDSAFTPDTEFPNGITDYKDTTDASVTAD
                     TTETTNTKFMSPDMVQETTNLDGGASLQAFTQRTIVQSLDSDFATGKIVATGICPWNA
                     PRRNISVTAVNASALPGGTLVYNSRPGNGGQLHDPTAIMYFRSSDIDAYGKVKPGVPI
                     EPLVVRARAGECINFTLLNKLPKLMADLDGFNTMPNIIHHFNANQVKPSNQVGLHPQL
                     LAYNVINSDGKNVGFNPNQTIGPGGVARYTWYAGDVVINGFQRIATPIEFGATNLISS
                     DPIKHSNKGAIGSLIVEPEGSTWIEDATSRAQATVTKTDGTSFREFVMQFQTDINMRF
                     ADGSPVPNLGGPEGAEDAEDSAQKALNYRTEPLWKRMGYAPETPFEVTRNFDFTNVLT
                     NAMVGGDPQTPVFTARAGQQVRFRVLNANGHARNNVFNLHGHFWQEEPYANNSKVIGN
                     NPLSEFKGAQYGIGPSSHYEVIPVNGAGGARRVTGDYLYRTQNSFMFDGGIWGIFRVT
                     P"
BASE COUNT          700 a          980 c         1107 g          852 t
ORIGIN      
        1 tgacgtcctc ggcagcgcgg attttcgtcg cgttctgcac gaggggatcg gcggtgaact
       61 cgatcgcgat accttgttcg actattttct gtggtgtggc gggtggcttt gcgtcctgcg
      121 cctgaaccgt tgccgttaaa agtagtaaag ctgcaagtaa gaaaagattt cggtgggttt
      181 gtcgcatcgt ttgcactcct cgagtgaatt gacctgtgcg gtgcaagctt tgtgcctgcg
      241 cagaaccgcg ataaagctgc cagttggctc ttaaaactgc ggaaaattac gaactgttgg
      301 ggaaaaaact tggggtggcc cattaggacc accccacgaa tgacaccgca acttcccagc
      361 tgtcgcaatt acggtgtcac acggaagatg ccccagatgc cgccgtcaaa catgaacgaa
      421 ttctgtgtcc gatacaggta gtcgccggta acgcgacgag caccacctgc accattcacc
      481 ggaatcactt cgtaatgtga cgacggtcca attccatact gcgcgccttt gaactccgaa
      541 agcggattgt tgccaatcac cttcgagttg ttggcgtagg gttcctcctg ccagaagtgt
      601 ccgtggagat tgaacacgtt gttgcgcgcg tgaccgttgg cattcagcac tctgaaccgg
      661 acctgctggc cggcacgagc ggtgaacacc ggtgtctgcg gatcgcctcc caccatcgcg
      721 ttagtcagca cgttggtgaa gtcgaaatta cgagtgacct caaacggagt ttccggagcg
      781 taacccatgc gtttccaaag cggctcagtg cggtagttga gcgctttctg ggccgagtct
      841 tcggcgtctt cagctccttc aggaccaccg agattcggta ccggacttcc gtccgcaaat
      901 ctcatgttga tgtccgtctg gaactgcatg acaaactcgc ggaacgacgt gccatcggtc
      961 ttggtgaccg tcgcttgagc gcgcgacgtc gcatcctcaa tccacgtcga gccttccggt
     1021 tcgacgatca gtgaaccaat cgcgcccttg ttgctgtgct tgattgggtc ggacgagatc
     1081 aggttggtcg cgccaaactc gatcggcgtc gcgatgcgct ggaagccgtt gatgacaacg
     1141 tctccggcgt accacgtgta ccgagcgacg ccgcctggtc caatggtctg gttcggattg
     1201 aagccaacgt tcttaccgtc gctattgatc acgttgtaag cgagcagttg cgggtgcaaa
     1261 ccaacctggt tggatggttt cacctgattg gcgttgaagt gatggatgat gttcggcatc
     1321 gtgttgaagc cgtccagatc cgccatcagc ttcggcagct tgttgagcaa cgtgaagttg
     1381 atgcactcac cggctcttgc tcgaaccacg agtggctcga tcggaacgcc gggtttcacc
     1441 ttgccgtagg cgtcgatgtc cgaactgcgg aagtacatga tcgcagtcgg atcgtggagc
     1501 tgtccgccat ttcccggacg gctgttgtaa acgagcgtgc cgccgggcaa tgccgaggcg
     1561 ttgaccgcgg taacgctgat gtttcttcgt ggcgcgttcc acggacagat gccggtagca
     1621 acgatcttgc ccgtcgcaaa gtcactatcg agcgattgca cgatagtgcg ttgcgtgaat
     1681 gcctggagcg acgcaccgcc gtcgagattg gtcgtttcct gcaccatgtc gggcgacatg
     1741 aacttcgtat ttgtcgtctc ggtggtgtcg gctgtgaccg aagcgtccgt cgtgtccttg
     1801 tagtcggtga taccgtttgg aaactcggtg tcgggagtga acgccgaatc gttggttgaa
     1861 agttgcgctg cgccttccgt gttgttgggc aacgccatca ggtctgtgag taatcctctg
     1921 cggccgttgt agatgcgcat gattccccac acaccgttcc actgaccgtc aacagacgcg
     1981 ctgttctggt acaggtaatc gatgaacggg cggttgccga ggatcgattc cttgccggtc
     2041 agaaattcaa agtgctcgga gatgccggcc acctgcgaat tgcgatagcc ggagttgttg
     2101 actgccagcg gatcctgcgg cgtgcctggt tgatgcagcc acttgtgacc gttgatcgtc
     2161 aggtagtgtg tttcttcgtg cgcgccgacg aggatacgaa tctgcacctt gtcattttca
     2221 taagctcgca gcagcggtgt gaacggatcg cccggctgca cgcccttcgt cagcgccgga
     2281 tagaacgtgg gctgaacgtt gaagagcggg tcggcacgaa ggatgttcga cttgtagact
     2341 ttggaaaaat caccagcagc gccggtggct tgtgtgttgg tccccggatt gcgcacgcgc
     2401 aacggcacgg gctcattccg ataattgaca ctcatcgtgc cagggtcttt cgaggagact
     2461 gcttccggac aaggagccgg aacgccaccg ggacaaacca gaccgttttc aacgatgaac
     2521 ggcaagccga tctcattgac gattggcgga ccgatgacgc gtaacggatc ggcgatcggc
     2581 cggccgttga cgtcaacacc cgcgcctgcc tggtaagcaa gctgatagtc cgcgaactca
     2641 aacagaaact cgcgatggct cagcgacgga tcggtttcga tgatgttagc ctgccagctt
     2701 gtcgggccac catcgaccgc gcgagtgccc atcgttactc ccgtttccgg gttcttccag
     2761 atggaacctt tcggctcgat tactagaccg gcgtagagac cggtctgctg gtgactcgat
     2821 ggtccaaagt gatcgtgcgt gaacactgtg cgcagtgtgc ggtcgaccct gttgttgttc
     2881 aaaacatcgt cggcaaacca gcgttgcacg gtggtctgtg cgccgagcgt gccgaagtac
     2941 gggtgtgctt tcgctttcgg acacgtgaac gtgccgtcgc gaatgtcgcc cgcgtccttg
     3001 ccgacacaac cattctgttt gcgaatggcg tgtatgcgtt cgattacttc atccggactg
     3061 aacgttccgt cttcgtagtt gaagccgttt cccgagccgt ctgacgaggt aacgtcaaac
     3121 ttcacgaggt gaatgtgttg tccgatgatg tccgtcggcg tgcgaatctg aaagtcgtcc
     3181 tgctcgtaga cgccgggtac gagattggtg tgatagaacg tgatgcaatc gttggtgttc
     3241 gcgcggaaga agaacggttc cggtgggcga gtgccggcga ttgtcggtgc tacgtcggcc
     3301 cacagcgaga gaatgcgtga ctgtgggaag tgccatcctg ctttgttcag tttgatgtcg
     3361 agctggaagg cggccgcttt gtaagtgcga ggagttccaa cggcaacgcc gttgctgtcg
     3421 atgcaggggt ccgcgaacgg agcgcctggc ttgcgcggca gtccgttgag cacgaagttg
     3481 gccggtgtgc cgtcgggcct gaagctcgcg tgcaaccgtt gttcgtgata gaccatcgcg
     3541 gccaattcct gggccgtgcc cgtttccgag aggctctggg ccacggctgt gaccaactct
     3601 ttactgaagt cgagacggtt ttcaacgctg atgaaggtt
//
LOCUS       DASWTX010000692         2647 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_162011, whole genome shotgun sequence.
ACCESSION   DASWTX010000692 DASWTX010000000
VERSION     DASWTX010000692.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2647
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162011"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..665)
                     /locus_tag="VGD38_10550"
     CDS             complement(<1..665)
                     /locus_tag="VGD38_10550"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0728500.1"
                     /translation="MRPLAQLQPNDANVFGAHVPDPAAKRILVVDDDEFIRNMFSAYL
                     NENYSASTAASSDEALAELAKDTYGLVVSDIQMPGRNGVELLREIRLRYPDTAVIMIS
                     GIDRPQRIRDALQQGAVDYLVKPCELEVLSFAVERALERRELTLTARSYRADLERQNI
                     ELSERKAELERLQAQIVHSEKMAGLGQLAAGIAHELNNPAGFIYGNMDLIRGYLGRLE
                     LILS"
     gene            complement(684..1370)
                     /locus_tag="VGD38_10555"
     CDS             complement(684..1370)
                     /locus_tag="VGD38_10555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728501.1"
                     /translation="MKTALLFILLAVAAPTPAQSSCEAGVQAPPVGFWTWTAGTQVRV
                     FVIERDFEQEDLPSLLKPLENWNAVSEATGSRVNFKYVGAKASPQHCENCLTIARGPV
                     FDKKRRHLTELRAYSARNDRLMTWATIVVDFTLTNRQALTDAVAHELGHSFGLRDCYS
                     CKAKSTVMNQFGRVNTPNDVPGPTTCDVAQVKSTYKQLALQVTQHKTMKIDEGEEPVD
                     DDTPIVLRKP"
     gene            complement(1372..2019)
                     /locus_tag="VGD38_10560"
     CDS             complement(1372..2019)
                     /locus_tag="VGD38_10560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728502.1"
                     /translation="MKHVFVAILVLAAFVNTAAQEQTPNCVTHHNAPPANSYYWPPDS
                     HVRVFFMRGMFTPEQREMLFTAMNTWTEAATEAGAGVKFSYAGDTYQLSQCNPCLTIT
                     RRDVNKQDRKHYAFFNPLKQDRNGLLLTAWIDFDFATTKPQALLGFMAHELGHGMGLW
                     DCKTCKKHKTIMNAFPGINSDNGLTAPSPCDVEVVRNVYQLHRRVENNPTGARKE"
     gene            complement(2044..>2647)
                     /locus_tag="VGD38_10565"
     CDS             complement(2044..>2647)
                     /locus_tag="VGD38_10565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728503.1"
                     /translation="FKSDVVLQTIGNKGQVTGEYIRNSEFLFDDHGNRIERVTYHPPS
                     TIRELRITKEDIQDLAGAQLLGIDIAESTKYNFHYHDEELLDGKRVYVLSVEPAAKPN
                     PHRMRERYFRGSVWIDAATFQMVKVRGIVEPQGKQRFPLFETWRESAGATFAFPSRTV
                     ADDVLRFPNRDVNYRIRVRYYDYKLFASTVSVKELDQPSN"
BASE COUNT          461 a          648 c          883 g          655 t
ORIGIN      
        1 gagaggatca gttcgaggcg accgaggtag ccgcggatca aatccatgtt gccgtagata
       61 aagccggcgg gattgtttag ttcgtgagca ataccggctg cgagttggcc caggccggcc
      121 atcttttcgc tgtgcacgat ctgcgcttgc aggcgttcca gctcggcttt gcgttctgac
      181 agttcgatgt tttgccgctc gaggtcggcg cggtaactgc gcgccgttag tgtcagttcg
      241 cgacgttcga gtgcgcgttc gactgcaaaa ctcagcactt cgagctcgca cggtttgacg
      301 agataatcga ccgcgccttg ttgcagcgcg tcgcgtatac gttgcgggcg atcgatgccc
      361 gagatcatga tcacggccgt gtcggggtaa cgcagacgaa tctcgcgcag gagttcgacg
      421 ccgttgcggc cgggcatctg gatgtctgaa acgacgaggc cgtaagtgtc tttagcgagc
      481 tcggccaggg cttcgtcgct ggaggctgcg gttgaggcgc tgtagttctc gttgagataa
      541 gccgagaaca tgttgcggat gaactcgtcg tcgtcgacaa ccaggatgcg ttttgctgcc
      601 gggtcgggca cgtgtgcgcc gaacacgttg gcgtcgtttg gttgtagttg cgcgagtggc
      661 cgcatgatgt tttttggacg ggtttatggt ttgcgaagga cgatcggcgt gtcgtcgtca
      721 acgggctctt cgccttcgtc aatcttcatc gttttgtgtt gtgtgacttg cagcgcgagt
      781 tgtttgtacg tcgacttcac ttgcgcgacg tcgcacgtgg ttgggccggg cacgtcattg
      841 ggcgtgttga cgcggccgaa ttggttcatc accgtgcttt tggctttgca cgagtagcaa
      901 tcgcgcaagc caaagctgtg accgagctcg tgggcgacgg catcggtgag tgcctggcga
      961 ttcgtgagtg tgaaatcgac gacgatcgtg gcccaggtca tcaggcgatc gttgcgcgcg
     1021 ctgtaggcgc gtagctcggt gaggtggcgt cgtttcttgt cgaagaccgg accgcgcgcg
     1081 atcgtcagac agttttcgca atgttgggga gacgcttttg cgccgacgta tttgaagttg
     1141 actcgcgaac cggttgcttc tgaaacggcg ttccagtttt caagaggttt taggagagac
     1201 ggcaggtctt cttgttcgaa gtcgcgctcg atcacgaaga cgcggacctg agttcccgcg
     1261 gtccacgtcc agaagccgac cggcggcgcc tgtacgcccg cttcgcagct cgattgtgcg
     1321 ggcgtgggcg ctgcgacggc gagcaggatg aataacagcg cggttttcaa gttactcctt
     1381 tcttgctccg gtaggattgt tttcaacgcg ccggtgaagt tgatagacgt tgcgcaccac
     1441 ttccacgtcg catggtgagg gcgcggtgag tccgttgtcg ctgttgattc ccggaaaggc
     1501 gttcatgatc gttttgtgct tcttgcaggt tttgcaatcc cagaggccca tgccgtgacc
     1561 gagttcgtgg gccatgaagc cgagtagcgc ctggggtttg gtggtcgcga agtcgaaatc
     1621 gatccatgca gtaaggagca ggccgttgcg atcttgtttg agaggattga agaaggcgta
     1681 gtgtttgcga tcctgtttgt tgacgtcgcg gcgggtgatc gtgaggcacg ggttgcattg
     1741 tgagagttgg taagtgtcgc cggcgtagga aaacttcacg cccgcgccgg cttcggttgc
     1801 tgcttcggtc cacgtgttca tggcggtgaa gagcatttcg cgttgttcgg gcgtgaacat
     1861 gccgcgcatg aagaagacgc gcacgtgtga gtcgggcggc cagtagtaag aatttgccgg
     1921 cggcgcgttg tggtgggtga cgcagtttgg tgtttgttcc tgagcggctg tgttgacgaa
     1981 cgccgcgaga acgaggatgg ctacgaatac gtgtttcata gacgtttgtt tggtgcgaga
     2041 gcgtcagttg ctgggctggt ccaactcctt gacgctgacg gtgctcgcga agagtttgta
     2101 atcgtagtaa cggacgcgaa tgcggtagtt cacatcgcga ttgggaaaac gtagaacgtc
     2161 gtcggctacg gtgcgactgg gaaatgcgaa cgtcgcaccg gccgactcgc gccacgtctc
     2221 gaacagtggg aaacgttgct tgccctgcgg ctcgacgatg cctctgactt taaccatctg
     2281 aaacgtggcg gcgtcgatcc acacagagcc gcgaaaatat ctttcgcgca tgcgatgcgg
     2341 gtttggtttg gcggcgggct cgacgctcag cacgtagacg cgcttgccgt ctagtaactc
     2401 ttcgtcgtgg tagtgaaagt tgtatttggt tgactcggcg atatcgatgc cgagtaactg
     2461 cgcgccagcg aggtcctgaa tgtcttcttt agtgatgcgc agttcgcgga tcgttgaagg
     2521 cggatggtaa gtgacgcgct cgatgcgatt gccgtggtcg tcgaagagaa attccgagtt
     2581 gcggatgtat tcgccggtga cctggccttt gttgcctatt gtctgcagca ccacgtcact
     2641 cttgaac
//
LOCUS       DASWTX010000693         1999 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_337810, whole genome shotgun sequence.
ACCESSION   DASWTX010000693 DASWTX010000000
VERSION     DASWTX010000693.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1999)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1999)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1999
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337810"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1201)
                     /locus_tag="VGD38_10570"
     CDS             complement(<1..1201)
                     /locus_tag="VGD38_10570"
                     /inference="COORDINATES: protein motif:HMM:NF013106.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HEY0728504.1"
                     /translation="MAVNRSKYSPTAIINTPPEQRRHLLSKLWLPAVLLLALAAGGLT
                     GIIAAYELNYSRAANEVAALATYRPSVVTRVYADDGETVIGEFALEKRIPLKYEEIPQ
                     VLKNAILAVEDVRFYDHIGIDPIRIMGAAWKNLTTDKLEGGSTLTQQLTKNLFLSKEQ
                     TYTRKVNEWVLALQIERYYTKNQIMELYVNHMFLGANAYGMEAGAETYFGKQAKDLTL
                     AEAALLAGVPKAPSDYSPTSNPAKAKERRDLVLDLMAKNGFVTQAEADAAKAKPIQLA
                     DTAYYQSQRKSSPFDYPVEYIRQELEDKYTTRVAQGGLSVYTTINVEAQKRAYEVVRA
                     GLRNYDRTHTSWRSSYTMIPTTVSNGEGPATPAELNNYKHPDWYGNDYEEGRHLMGLI
                     MKVDRARN"
     gene            1386..1773
                     /gene="ssrA"
                     /locus_tag="VGD38_10575"
     tmRNA           1386..1773
                     /gene="ssrA"
                     /locus_tag="VGD38_10575"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
BASE COUNT          404 a          535 c          573 g          487 t
ORIGIN      
        1 cgttgcgcgc gcgatcgact ttcatgatca ggcccatcaa gtggcggcct tcttcgtagt
       61 cgttgccgta ccagtcggga tgcttgtagt tgttgagttc ggccggtgtt gctggacctt
      121 cgccgttgct cacggtcgtc gggatcatcg tgtagctcga acgccaactg gtgtgcgtgc
      181 ggtcgtaatt ccgcaggccc gcgcgcacaa cttcgtacgc gcgcttttga gcttcgacgt
      241 tgatcgtcgt gtagaccgaa aggccgccct gcgccacacg cgtcgtgtac ttgtcttcga
      301 gctcctggcg aatgtactcg acgggataat caaacggaga cgatttacgt tgtgactggt
      361 agtaagccgt gtcggcgagc tggatcggtt tggctttcgc agcatcggct tcggcttgcg
      421 tgacgaaacc gttcttcgcc atcaggtcga gcaccaggtc gcgacgttct tttgctttcg
      481 cgggatttga cgttggcgag taatcgcttg gcgccttagg cacgccggcg agcaacgctg
      541 cttccgcgag tgtcagatct ttggcctgtt tgccaaagta cgtttccgcg ccggcttcca
      601 tgccgtaagc attcgcgccc agaaacatgt ggttgacgta caactccatg atctggtttt
      661 tggtgtagta gcgttcgatc tgaagcgcga gcacccactc gttaactttg cgcgtgtagg
      721 tttgttcttt tgagaggaaa aggttcttgg tgagctgctg tgtgagcgtg gaaccgcctt
      781 cgagtttgtc tgtcgtcagg tttttccacg cggcgcccat gatgcgaatc ggatcgatgc
      841 cgatgtggtc gtaaaagcgg acgtcttcga ccgcgagaat cgcattcttc agaacctgcg
      901 gaatctcttc atacttcagt gggattcttt tctcgagcgc aaactcaccg atgactgtct
      961 cgccgtcgtc cgcgtagacg cgggtgacca cgctcggacg atacgtcgcc aaagccgcga
     1021 cctcattcgc cgcgcgggag tagttcaact catacgccgc gatgatgccg gttagtccgc
     1081 cggcagcgag cgccagcagg agcacggccg gaagccacag cttggagagt aggtgcctgc
     1141 gttgttcggg tggcgtattg ataattgcgg tgggcgagta tttagaacga tttacagcca
     1201 taaatatgaa ttcccccagg acaacttgcc tcggttacgt gcgtcgtgac aacgtggcta
     1261 gccacaggag agccggaaga gtatagcgca cttggcttta cgagcttaaa cgcgcgggca
     1321 tacaactctg gagcctccct ttgcgtcttt gcatactgcg ggcgataatg accgtgcttc
     1381 gccatggggg cgacaggctt cgacaggaac ctgaacgatc gtcgcgatgc atgccgggct
     1441 cccttatgca gctcgttaaa acgtgtaagg aaacacaact gccaataaca atgaattggc
     1501 tctcgctgcc taattaagca ccgagcgtct cgccgcaagt tgctcatgcg cgcggagtga
     1561 gatgtcactt agatgagctg gcctgctgct tcggtccgtg gcagtgggcg agaccaaagc
     1621 cggactagct tgggttgagg tcttgtcgct tcactgactc gacgttgagc gaatctttgc
     1681 cagcttgtct ggcaagaaag agaagcgact aagcatgtag agtccttcgg cgttggtttt
     1741 tggatccgag ttcaattctc ggcgcctcca ccataaattg cgggagtcct cactcccttc
     1801 gaacgatata gagaccagtt atgagcacca catctcaaac gcacttaatg actgtggaag
     1861 aattcatgaa catcgatgac gagccgaatc gtcacgaatt aatcaaagga gaactcctca
     1921 caatgccttc tccaaagcct ctccacgggc gggttgtcgc caaccttctg atcctgttgg
     1981 gactacacgt caaaggcaa
//
LOCUS       DASWTX010000694         3692 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_315038, whole genome shotgun sequence.
ACCESSION   DASWTX010000694 DASWTX010000000
VERSION     DASWTX010000694.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3692
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_315038"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1349)
                     /locus_tag="VGD38_10580"
     CDS             complement(<1..1349)
                     /locus_tag="VGD38_10580"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HEY0728505.1"
                     /translation="MLTVIFVGLLALPLLLKQFRTRSEAASSSLESSAALKRYGFYLT
                     EIAESAGAKFLHQAPSLDPRLDHIMPQVASMGAGVSIVDYDRDGWSDIYVTNSGEGSK
                     NALYRNLGNGSFKDVAAELGIADVNQPGTGVSMGAVWGDYDNDGYEDLFLYKWGKPEL
                     FHNDAAKTFTRATDKAKLPAWVNANTALWFDYDRDGRLDLFLGGYYSEDVDLWRLKTT
                     KMMPESFEYARNGGRKYLFHNLGDGQFEEVSQKLGIDTRRWALAAAAADLRGTGYPDL
                     FIANDYGISELFFNDGKRFREVGNQTGVGFAPKSGMNATVGDVLNNGKYSIYVSNISE
                     EGVLIQGNNLWVPREGTAGDALKYDNLARSMDVEIGGWSFGAQFGDLNNDGTLDLYLV
                     NGYISADRNTNYWYDFSKIAGGNSTIISDAAHWPAMDGRSLSGYQQKRVWLNDGAGK"
     gene            complement(1373..>3692)
                     /locus_tag="VGD38_10585"
     CDS             complement(1373..>3692)
                     /locus_tag="VGD38_10585"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HEY0728506.1"
                     /translation="RQDSPTSFVDVTAETKLPATVTNADFSGAWAADIEADGDLDVVL
                     GARRGNVIVLRNNGDGTFLNVEPFAGITGATGFAWADFDADGDPDATFVDEIRLVHVF
                     SNERQGQFSKREVPFAFDTGPARAINVADLNDDGVLDLVIARADGAIMRLSDKDHGAG
                     WDVAEVARVDGIPSEPFKLLVADLDNNGGLDLALGTSVLLSDENGKFLAGKSVTQSVF
                     DVADVNSDGRLDLLGLSEERPVHGINTGTKSYHWQVIRPRATSAAGDQRINPFGVGGE
                     MEIRSGLLVQKQPITGPLLHFGLGDQTAADVIRVVWPNGSVRADFEVKPDQEIVIEQR
                     LKGSCPFLFAWNGKQMEFVKDTVPWSSAIGLRINTLGTARVEATEEWYKIGRDQLVPR
                     DGYYDLRVTAELWETYYYDQLSLMVVDHPSGTEIFVDERFVIPAAKLAVTTVSSPRPI
                     VSAVDDNGTDVTNIVKTLDGHYLDNFGRGKYQGVARDHYVEIDLGNDVPAEGPLWLIA
                     HGWMHPTDSSINVAISQGQQEQARPLSLEVPDGRGGWEVARPNLGFPAGRKKICLFDL
                     SNVFKPGTPRKLRLRTNLEVFWDLLEWAVELPDAAPKVTHLNPEVADLHYRGYSVVNQ
                     ANASSPETPDYNRLSGSKQIWRDLIGYYTRFGDVRELLLRADDRYVIMNAGDEMSFRF
                     AAPAPPPPGWVRDYVIRGDGWIKDGDYNSTFSKTVLPLPYHAKSLYDTPPGRLEDEWV
                     YRRFPEDWQNYHTRYVAPDGFVHMLRPRQKSQ"
BASE COUNT          763 a         1119 c         1012 g          798 t
ORIGIN      
        1 aacttacccg cgccgtcgtt gagccaaact cttttttgct gataaccgga caagctgcgg
       61 ccatccatcg cgggccagtg cgcagcgtcg gaaatgattg tcgagttgcc gcccgcgatc
      121 ttcgagaagt cgtaccagta attcgtgttg cgatcggcgg agatgtaacc gttgacgaga
      181 tacagatcga gcgttccgtc gttgttcaga tcgccaaact gcgcgccgaa gctccagccg
      241 ccaatctcga cgtccatcga gcgcgcgagg ttgtcgtatt tcaacgcgtc gcccgcggtt
      301 ccttcgcgcg gcacccaaag attgttgccc tgaatcagca cgccttcttc ggagatgttc
      361 gaaacgtaga tcgaatactt gccgttgttc agcacgtcgc ccacggtcgc gttcatgccg
      421 ctcttgggtg cgaagccgac gccggtctgg ttgccgactt cgcgaaagcg tttgccgtcg
      481 ttgaagaaga gttcggagat gccgtagtcg ttggcgatga agagatcggg ataaccagtg
      541 ccacgcagat cagccgcagc cgctgctaat gcccagcgac gcgtatcgat cccgagcttc
      601 tggcttacct cttcaaactg tccatcgccc aggttgtgga agagatactt gcggccgccg
      661 ttgcgcgcgt actcaaaact ctccggcatc atcttcgtcg ttttcaaacg ccagagatct
      721 acgtcctccg aataatagcc gccgagaaaa agatcgaggc gcccatcgcg atcgtagtcg
      781 aaccacaacg cggtatttgc gtttacccac gcgggcaact tcgctttgtc agttgcgcgc
      841 gtgaaagtct ttgcggcgtc gttgtgaaag agctcgggct tgccccactt gtagagaaac
      901 agatcttcgt aaccgtcgtt gtcgtagtcg ccccaaaccg cgcccatcga aacaccggtg
      961 cccggttgat tcacgtccgc gattcccaac tccgcggcca cgtccttgaa cgaaccgttg
     1021 ccgagattgc gatagagcgc gttcttgctt ccctcgccgc tgttcgtgac gtagatgtcc
     1081 gaccagccgt cgcggtcgta atcaacaatc gaaacgcccg cgcccatcga cgccacttgc
     1141 ggcatgatgt gatccagcct gggatcaagc gacggggcct ggtgcaggaa ctttgcaccg
     1201 gccgactccg cgatttcggt gagatagaaa ccgtaacgct tcaaagcggc cgacgactcg
     1261 agcgaactgc tcgccgcctc gcttcgcgtg cgaaactgtt tcagtaggag cgggagtgcc
     1321 agtagtccca cgaaaatcac agtgagcact actcttgcga acttgcgatc gatcattgcg
     1381 acttctgtct gggcctcaac atatgtacaa aaccgtcggg agcgacgtaa cgcgtgtgat
     1441 agttctgcca gtcctccgga aaacggcgat acacccattc gtcttcgagt cgtccgggcg
     1501 gcgtgtcgta caagctcttc gcgtgatatg gcagcggcag cacggttttc gagaacgtgg
     1561 aattgtagtc cccatccttg atccagccat cgccgcgtat cacgtaatcg cgcacccaac
     1621 cgggcggcgg cggcgcaggc gcggcaaagc ggaacgacat ctcatcacca gcattcatga
     1681 tcacgtagcg atcgtcggcg cgcaggagca actcgcgcac gtcgccaaat cgcgtgtagt
     1741 agccaatcaa atcacgccag atctgtttcg atcccgaaag gcggttgtag tctggtgttt
     1801 caggagacga agcgttcgcc tgattgacga cagaataacc gcgatagtga agatccgcca
     1861 cctcgggatt caagtgcgtg accttcggcg ccgcgtcagg aagttcaacc gcccactcta
     1921 acaaatccca aaaaacctcc agatttgtgc gcaaacgaag ctttcgcggc gtgcctggtt
     1981 tgaagacatt cgacaggtca aacaggcaaa tctttttgcg tccggcagga aatccgaggt
     2041 tgggtcgcgc gacttcccag ccgccacggc cgtccggaac ctccaaactc aacggcctgg
     2101 cttgttcctg ttgtccctgg ctgatggcca cgttgatcga cgaatctgtc ggatgcatcc
     2161 acccgtgcgc gatcagccaa agcggacctt cggcaggcac atcgtttccg agatcgatct
     2221 cgacgtagtg atctcgcgcg acaccctggt attttccgcg cccgaagttg tcgagatagt
     2281 ggccgtcgag agtcttgacg atattagtga cgtctgtccc gttgtcatca accgcggaaa
     2341 cgattggtcg tggacttgaa accgttgtta cggccagctt cgccgctgga ataacaaatc
     2401 gttcgtcgac aaagatctcc gtaccgctgg gatgatccac caccatcaaa cttagctgat
     2461 cgtagtaata ggtttcccaa agttcggccg taacacgcaa gtcgtaataa ccatcgcgcg
     2521 gtacgagttg atcgcgcccg atcttgtacc actcttccgt tgcttcaacc cgggcggttc
     2581 ccaacgtgtt gatgcgcaag ccaattgccg aactccacgg cacggtatct ttaacaaact
     2641 ccatctgctt gccgttccac gcgaaaagaa acggacacga tcctttcagg cgctgctcga
     2701 tcacaatctc ctgatctggt ttaacttcaa aatctgcgcg cactgatccg ttgggccaga
     2761 cgacgcggat cacgtcggct gctgtttgat ctccgagccc gaagtgaagc agtggaccgg
     2821 tgatcggttg tttctgcacg agcaggccgg agcggatttc catctcaccg ccgacgccaa
     2881 acgggttgat tcgttgatcg ccagccgcgc ttgtggcgcg cgggcgaatc acttgccagt
     2941 gatagctttt tgttcctgta tttatcccgt gtactggccg ttcttcactc aaacccaaca
     3001 ggtccagtcg cccgtcacta ttaacatctg caacatcaaa cacgctttgg gtaacactct
     3061 ttccggcgag aaactttcca ttctcatcgc tcaacaaaac agacgtgccg agcgctagat
     3121 cgagtccgcc gttgttgtcg agatcggcga ccagcagctt gaacggttcg ctgggaatgc
     3181 cgtcaacccg cgcgacttcc gccacgtccc aacccgcgcc gtgatccttg tctgacagcc
     3241 gcatgatcgc tccgtcagcg cgcgcgatca cgagatcgag cacgccatcg tcgttcagat
     3301 ccgcgacgtt gattgcccgc gccggcccgg tgtcgaatgc aaacggaacc tcgcgcttgc
     3361 tgaactgtcc ctggcgttcg ttgctgaaga cgtggacgag acgaatctcg tcgacgaacg
     3421 tcgcatcggg atcgccgtcg gcgtcgaagt ctgcccaggc gaacccggtg gcgccggtga
     3481 tgccggcgaa cggttcgacg ttaagaaacg tgccgtcgcc gttgttgcgc aacacgatca
     3541 cgttgccgcg ccgcgcgccg agcacgacgt cgagatcgcc gtcggcttcg atgtccgcgg
     3601 cccacgcgcc gctaaagtcg gcgttcgtga ctgttgcggg cagtttggtt tccgcggtga
     3661 catcgacaaa cgacgtggga ctgtcctggc ga
//
LOCUS       DASWTX010000695         1509 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_224891, whole genome shotgun sequence.
ACCESSION   DASWTX010000695 DASWTX010000000
VERSION     DASWTX010000695.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224891"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..333)
                     /locus_tag="VGD38_10590"
     CDS             complement(<1..333)
                     /locus_tag="VGD38_10590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728507.1"
                     /translation="MSHTSILSRAEIESMGPPLPEEVADTGISEQFLCDLALKHVAML
                     PEPTTNSVAERINLPRTLTEDLLQQLYREKLIEVKMQSAIGSTRYAMLDHGWDRLTRL
                     LSVCGYVGP"
     gene            complement(361..1335)
                     /locus_tag="VGD38_10595"
     CDS             complement(361..1335)
                     /locus_tag="VGD38_10595"
                     /inference="COORDINATES: protein motif:HMM:NF015649.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728508.1"
                     /translation="MNKRRILAIFIAFVLTIAASAMWSASTIEREGDPDAIVLEDSGS
                     EAGEEQPVKKKGGNKIVKVFAAPFKAFGRLFGGKDDNRLQRMSEKDAERFASVAVTKI
                     EDARNQNDRKVRTDGSAREHMESGRDFLLEGRYNEAISELSTAVSLDPKLTEAHNLLG
                     VAYDKKGFGDRAKESFERAVKLEEDAETLNNLGFSLYQNGNYRAAIDRLKRAAKLAPN
                     DERILNNLGLAYCRLGKVDEAYKAFARATGPLTGNLNTAKMMERFGREDDAIRYYEAA
                     RQIDPNNTIALRRLADLYERVGRASDADWARSALAIAQNNGNGNNGGK"
BASE COUNT          293 a          436 c          428 g          352 t
ORIGIN      
        1 tggaccaaca tatccacaca ccgacagcaa acgcgtaaga cgatcccaac cgtggtccaa
       61 catcgcataa cgcgtcgaac caatcgccga ctgcattttc acttcgatca gcttctcgcg
      121 atagagctgt tgcagcagat cttcagtcag cgtgcgcggc aggttgatcc gttccgcgac
      181 ggagtttgtc gtcggctcgg gcagcatggc cacgtgtttc aaagcgaggt cgcagagaaa
      241 ttgctcggag ataccggtgt cggcgacttc ctccggcagg ggtggtccca tgctctcgat
      301 ttccgcgcgg ctcaggatgg acgtgtggga catgtgggtt ctcgtttcgt ttgattgttc
      361 ttacttaccg ccgttattac cgttgccgtt gttctgcgct atcgcgagcg ctgagcgggc
      421 ccagtcagca tcggaagcgc ggccgacgcg ttcatacaga tcagccaggc ggcgcagcgc
      481 gatggtgttg ttcggatcga tctgtcgcgc ggcttcgtag taacgaatcg cgtcgtcttc
      541 acggccgaag cgttccatca ttttcgcggt gttgagattg ccggtcagtg gtccagtcgc
      601 gcgtgcgaac gctttgtaag cttcgtcaac tttgcccaaa cggcaataag cgagaccgag
      661 attgttgaga atgcgctcgt cgttgggcgc gagtttcgcc gcgcgcttca ggcgatcgat
      721 cgccgcgcga tagttgccgt tttgataaag cgagaaaccg aggttgttca acgtctcggc
      781 gtcttcttcg agcttgacgg cgcgttcaaa cgattccttc gcgcgatcgc caaagccttt
      841 cttgtcgtaa gcaacgccga gcaggttgtg cgcttcggtc aacttcggat cgagtgaaac
      901 ggcggtcgag agctcggaaa tcgcttcgtt gtaacggcct tccaaaagaa aatcacgacc
      961 cgattccatg tgctcgcgcg cggagccgtc ggtccgaact ttacgatcgt tctggttgcg
     1021 cgcgtcctcg atcttcgtca cggcgactga cgcaaagcgt tcggcatctt tctcactcat
     1081 gcgctgcaaa cggttgtcgt ctttgccgcc aaatagccgg ccgaaagctt tgaaaggcgc
     1141 agcgaacacc ttgacgatct tgttgccgcc cttcttctta accggctgct cttcgcccgc
     1201 ttccgaaccc gaatcctcga gcacgatcgc atccggatcg ccctcgcgtt cgattgtcga
     1261 agcactccac atcgcgctcg ccgcgatggt cagtacaaaa gcgataaaaa ttgccaggat
     1321 tctacgtttg ttcatggtcc aactcctcta catgttgccg agaacgtcca tgaggttaag
     1381 ggcggccggg ccaaggatcg cgataaagag tgtcgggaaa aggaaacacg cgagcgggaa
     1441 caacagtttc accgccgcct tctgtgcttc ctgttcggct cgctggcgac gcttcgtgcg
     1501 cagcgaatc
//
LOCUS       DASWTX010000696         3393 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_224916, whole genome shotgun sequence.
ACCESSION   DASWTX010000696 DASWTX010000000
VERSION     DASWTX010000696.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3393
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224916"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            245..2641
                     /locus_tag="VGD38_10600"
     CDS             245..2641
                     /locus_tag="VGD38_10600"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HEY0728509.1"
                     /translation="MRRQLIFLLVFVFLLPPAIAQNQSRPAVQVKGLKERVTITRDER
                     GIPYVEAKSDEDLYFAQGYATAADRLWQMDLFRRTARGELAEVLGAGPNNVALDQDKL
                     HRTYGFAQAAEAEVAQASPKSLAIIEAYARGVNAYASSLDPKSLPPEFQLLQYSFRPW
                     TPADSFIIAKIFFEALSDTWRLDVMRQALASLPAEKRNALLPSMSPLDVLVVGKDTKA
                     RSSSARLQQPQAPLSREALDALAHNQSIAAAALDRIGFYADGLAASNNWVISGSRTVT
                     GKPLLANDPHLRPSAPSIWHMVHLSGPGVRVAGITAPGVPGVIIGHNDRIAWGFTNVG
                     PDVQDLYVEKFDPANPKRYQTPQGWQDALVRQEQIKVRKGFTSSEFDTVTHEVTVTRH
                     GPIIFEADGKRYALKWTALDPKVNRPDLGYAMNRARNWKEFNAALESFTAPTQNIVYA
                     DVDGHIGYHAAGVVPIRKSGDGSVPYDGSTDAGEWTSYIPIAKLPQLYDPPSGIIVTA
                     NQRIVGTDYPYFLTHSWAQPYRARRILDLLNEKPKHSTDDFRRILGDVYSIAGVLFAQ
                     EAVKLLRPKLTPADEKLRATLDAFEKWDGRLNAESTVAPILSQMRQTFRSKILAGALG
                     PDLVRNYQWSNFDTTLDRILKERPAEWLPKEFASYEDLMRLSYDEAIANLKKNLGADE
                     TKWTWGEMVKARFPHPLGAAPLIGGQFTVPPFPQNGTGGLLGATVNVGASVSMRLIAD
                     LSDLDKTQQGIALGVSGLPKSPHWSDQLADWRAVTPREFPFTVAAVTKAAKDTLVLEP
                     "
     gene            2649..3236
                     /gene="thpR"
                     /locus_tag="VGD38_10605"
     CDS             2649..3236
                     /gene="thpR"
                     /locus_tag="VGD38_10605"
                     /inference="COORDINATES: protein motif:HMM:TIGR02258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008664 - 2'-5'-RNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HEY0728510.1"
                     /translation="MEWRTFCAFELPFDLRARLEDRIGRLRSNVPDVRASWTRPENTH
                     LTLKFFGNVPVDRLPSISAAADHAAKHFSPIRIEVAKAGVFPNVNRARVLWIGVNDSS
                     GELARLQRMLEEQCAIAGFPKEDRTFKPHLTIARIRTPEGARQLAEAHVRMEFESSEI
                     TLNELIVFRSEPSSKGSKYTPISRHSLSRSPSSPR"
BASE COUNT          692 a          969 c         1008 g          724 t
ORIGIN      
        1 gattgaatcc ggatgtgttg ttttgagttg agggtgcgtg aggtgtttcg tcgcgctcta
       61 cggcgctgtt atgattaagc acgatcttca tcctttcgct agaaggttga ggtccagggt
      121 cggcttcgtg ttgtcgcaca agtcggcccg cttctttgtt ggggacagtc tgcgcactat
      181 aacatagttt cgtccgcgaa ggtggggtta aagcgggcat cgcgatgtgc tagtatccgc
      241 actcatgcga cgacaattaa tcttcctgct cgtttttgtt tttcttcttc ctcccgcaat
      301 tgcgcaaaat cagtcacgcc ccgcggtaca ggtcaaaggc ctgaaggagc gggtgacgat
      361 tacgcgcgac gagcgcggta ttccttacgt cgaggccaag agcgatgagg atctctactt
      421 cgcgcagggc tatgcgacgg cggcggatcg tctgtggcag atggatctgt ttcggcgtac
      481 ggcgcgcggc gaactcgcgg aagttttagg cgctggtcca aacaacgtcg cgttggacca
      541 ggacaagctg catcgcacgt acggctttgc gcaggcagcg gaagcggaag tggcgcaagc
      601 gtcgccgaag tcgttagcca taatcgaagc ctacgcgcgc ggtgttaacg cttatgcgtc
      661 gtcgctcgat ccgaagtcgt tgccgccgga gtttcagctt ctgcaataca gcttccggcc
      721 gtggacgccg gcagactcat tcatcatcgc caagatcttt ttcgaggcgc tgtcagacac
      781 gtggcggctc gacgtaatgc gccaggcgct cgcttcgttg ccggctgaga agcgcaatgc
      841 actattgccg tcgatgtcgc cgctcgacgt gctcgtggtc ggcaaagaca cgaaagcacg
      901 atcctcatca gcacgactgc agcaaccaca ggcgccgctc tcgcgtgaag cattagacgc
      961 gttggcgcac aatcaatcca tcgccgcggc ggcgctggat cgcatcggtt tctacgcgga
     1021 cggcctcgct gcgagtaaca actgggtgat cagcggaagc cgcaccgtta ccggcaaacc
     1081 tttgttggca aacgatccgc acctgcggcc ctcggcgccg tcgatctggc acatggtcca
     1141 cctgagcggt cccggcgttc gcgtcgccgg catcactgca ccgggtgttc ccggagtgat
     1201 catcggtcat aacgatcgta tcgcatgggg ctttacgaac gtcggacctg acgtgcagga
     1261 cctctacgtc gagaagttcg atcccgcaaa cccgaagcgt tatcaaacac cgcagggctg
     1321 gcaggacgcc ctcgtccgcc aggagcagat caaagtccgc aaaggtttta cttcttccga
     1381 gttcgacacg gtcacgcatg aagtcacggt gactcgtcat ggtccaatca ttttcgaagc
     1441 cgacggcaag cgctacgcac tgaagtggac ggcgctcgat cccaaggtga atcgcccgga
     1501 tcttgggtac gcgatgaatc gcgcgcgtaa ctggaaagag ttcaacgccg cgctcgaatc
     1561 attcaccgcg ccgacgcaga acatcgttta cgcagacgtc gacggacaca tcggttatca
     1621 cgctgctggt gtcgtgccga tcaggaagtc gggcgacggc agtgtgcctt acgacggctc
     1681 gaccgacgcg ggcgagtgga ccagttacat cccgatcgcg aagctgccgc agctttacga
     1741 tccgccctcg ggcatcatcg tcaccgcaaa tcaacgaatc gtcggcactg actatcccta
     1801 ctttctgacg cactcgtggg cgcagccgta tcgcgcacgc cgcatcctcg atctgctcaa
     1861 cgaaaaaccg aagcattcaa ccgacgactt ccgccgcatc ctcggcgacg tttactcgat
     1921 cgcgggcgtg ttgtttgcgc aggaagcggt gaagcttttg cggccgaagc tgacaccggc
     1981 tgacgagaaa ctgcgcgcga cgctggatgc gtttgagaag tgggacggac gcctcaacgc
     2041 tgaatccact gtcgcgccga tattgtcgca aatgcgccag acgttccgct cgaagattct
     2101 cgcgggcgcg cttggtccgg atctcgtgcg gaactatcag tggagcaact tcgatacgac
     2161 actcgatcgc atcctcaagg aacgtcccgc ggaatggctg ccgaaagaat ttgcgagcta
     2221 cgaagacctg atgcgcttgt cttacgacga ggctattgcg aacttgaaaa aaaatctcgg
     2281 cgctgatgaa accaaatgga cctggggtga gatggtgaaa gcgcgttttc cccatccact
     2341 cggcgcggcg cctttgatcg gcggacagtt caccgtgccg ccgtttccac agaacggcac
     2401 gggcggattg ttaggcgcga cggtgaatgt cggcgcgtca gtgtcgatgc gcctgatcgc
     2461 agacctgagt gacttggaca agacacagca aggcatcgcg ctcggcgtat cgggtttgcc
     2521 taagagtcca cactggagcg atcaactggc agactggcgc gccgtcacac cgcgtgagtt
     2581 tccgttcaca gtggcggctg tcacgaaggc cgcgaaagat acgctagtgc tcgagccata
     2641 ggaatgccat ggaatggcga actttctgcg cgttcgagct accttttgat cttcgcgctc
     2701 gactcgaaga tcggatcggg cgtttgcgca gcaacgtccc cgatgttcgt gccagttgga
     2761 ctcgcccgga aaacactcac ctgacgctga agttcttcgg caatgtgccc gtcgatagac
     2821 ttccaagcat atcggcggct gccgatcacg cagcgaaaca cttctcgcct attcggatcg
     2881 aggtggcgaa agcgggtgtg tttccgaatg tgaatcgcgc gcgtgttttg tggattggcg
     2941 tcaacgattc gtcaggtgaa ttggccaggc tgcaacggat gctggaagag caatgtgcga
     3001 tcgccggctt cccaaaagag gatcgcacat tcaaaccaca cctgacgatt gcccggatca
     3061 gaactcccga aggtgctcga caactggcgg aggctcacgt gcgaatggag tttgaatcgt
     3121 cagagatcac attgaacgag ctgatcgttt tccgcagcga gccgagcagc aaaggttcga
     3181 agtacacgcc gatttcacgg cattctcttt cgcgctcgcc ttcgtcgccg cggtgagctt
     3241 tgggtttcgt caattcggat gcgcagcagt gtgtccgtcc cgcccggctg caagggtgga
     3301 tgcgccatcg tgcagatagc gtatcgagcg ttttcgttct tttctcgtaa gccaagttct
     3361 tttacgatcc gaggcacgag ggctttgatg tcg
//
LOCUS       DASWTX010000697         6446 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_75274, whole genome shotgun sequence.
ACCESSION   DASWTX010000697 DASWTX010000000
VERSION     DASWTX010000697.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6446
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75274"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..450)
                     /locus_tag="VGD38_10610"
     CDS             complement(<1..450)
                     /locus_tag="VGD38_10610"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEY0728511.1"
                     /translation="MPTYVFKGRNRLNEIVVGERVADNREALRALLRREQVTLTSVKE
                     KGREIGIPKIGGRKKVKAKDLSIFTRQFSVMIDAGLPLVQCLEILAQQQDNKYFQQVL
                     LQVRQDVEEGSTLAAAMGRHSKVFDQLYSNMVEAGETGGILDLILQRL"
     gene            complement(469..1620)
                     /locus_tag="VGD38_10615"
     CDS             complement(469..1620)
                     /locus_tag="VGD38_10615"
                     /inference="COORDINATES: protein motif:HMM:TIGR01420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HEY0728512.1"
                     /translation="MSELLRKLSELGGSDLHITTGSPPQVRVDGHLRPLESYRVLTSA
                     DTKQLAYSVLTDAQKHRFEENLELDFSFGVKGLSRFRANLFNQRGAVGAVFRAIPYEI
                     KAFEELGLPPVVKQLCEKPRGLILVTGPTGSGKSTTLAAMIDKINRDRHEHILTIEDP
                     IEFLHNHKGCLINQREVNADTHGFAAALRTALRQDPDVVLVGEMRDLETIESALRIAE
                     TGHLTLATLHTNSAASTINRIIDVFPSDQQAQIRAQLSLVLEGILCQALLPRAEGAGR
                     AMALEILVPNGAIRNLIREDKVHQIYSMMQTGQDKYGMQTFNQALATLYHKRQISLDT
                     ALQRSSNVDELRELIDRGSGVNAAQTAKPHASPYAQARPIGSRPNVGSR"
     gene            complement(1675..2598)
                     /locus_tag="VGD38_10620"
     CDS             complement(1675..2598)
                     /locus_tag="VGD38_10620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728513.1"
                     /translation="MLRTIAIALILVLSVGVMLPFSNEAHGVRQSVQVSKKRQYRYRS
                     RAWWRRYRARLRQKREAAAALAAHRKAMLALPKNVPVGDLSAVGGPSVPVIPESSLGI
                     SMLPAPPAYTAANTQRVAAAPTAQPVPAQPIVVTTDSQPAAVTPNVQAAHATPNSATR
                     PRVVGSLNASVKSPAATLPGQMSLSVVALSRPNPVFLTSREEKNMLAGLPVADLRRIV
                     IDKMVAAGGWVTNDFIREVNGKRVFVVMARTPGDTLTPERAWTFYFTEAGGRIYGLTT
                     DSSLEFADRMSKEADRYIETLRAKAEPISNK"
     gene            complement(2616..4421)
                     /gene="pilB"
                     /locus_tag="VGD38_10625"
     CDS             complement(2616..4421)
                     /gene="pilB"
                     /locus_tag="VGD38_10625"
                     /inference="COORDINATES: protein motif:HMM:TIGR02538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV-A pilus assembly ATPase PilB"
                     /protein_id="HEY0728514.1"
                     /translation="MSAKLGEILVRENLISPQNLREALDYQREHGGRLGFNLVKLGLV
                     SDDMITAVLSRQYGIPSVNLDLFNIDPAVLRLIPQEVAQKHSVLPLSRVGATLTLAMV
                     DPTNVFALDDVKFMTGLNVEPVVVAEGSVQQAIAKYYGTSREIELASTAAEEASFEKA
                     AKTSKNGNGAITHDDLVSLDSIDFDTEHSEDVEVLEDNEEIDLSTLSRMSEDAPVVRL
                     VNVLLVDSLRRGASDIHVEPYEKELRIRFRIDGVLYDVMHPPLKMRDALISRVKIMSK
                     LDISEKRLPQDGRIKIKVKVDSRSRELDFRVSTLPTLFGEKVVLRLLDKQNLMLDMTK
                     LGFEPESLAKFQRNISKPYGMVLVTGPTGSGKTNTLYSALQSLNTVDTNIMTAEDPVE
                     FNLMGINQVQMKEQIGLNFAAALRAFLRQDPNIVLVGEIRDFETAEIAIKAALTGHLV
                     LSTLHTNDAPSTISRLMNMGIEPFLVATSVNLIQAQRLIRRICKDCKQDHPTPPEALI
                     EVGFSPEEARTLKTFKGKGCATCNNTGYKGRIGLYEVMEITDELRELILIGASALELR
                     KKAIDDGMITLRESGLFKIRDGVTTIEEVVRETVA"
     gene            complement(4697..6037)
                     /locus_tag="VGD38_10630"
     CDS             complement(4697..6037)
                     /locus_tag="VGD38_10630"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY0728515.1"
                     /translation="MTGKHFIGALAVAILLAVASVPAFAQTAELRGKVMMKQADGQTV
                     PLAGARIDVFRTDMKAQYDTKTNKNGEFVFAGLPFIGTYTVVASHATATPNFVPGVKV
                     GRGAPVEITVTPGDGRVLTREDLDKVGGTNPNPPAGGAPSAADKAKMEELAKKNAEIE
                     AGNKKITEANEVIARTFKTGNEALTAANTASRAKNTDEAVQKFTAAIAAYDEGLVADP
                     EQPALLTNKAVALKGRGVERYNSAITNKSLDDAGRTAALDAAKGDFKAAAETSTKAVS
                     MLKGQTAPTDPAELDRYNKNKYAAMLTNSESMRLYVSKADPTKADEGLAAFKDYIAVE
                     QDPAKKSKAQLDAAQMLLDSGQADKALLEFQAVLQSQPDSPEANLGAGLALYAQQDKA
                     KFQEAANYLQHFVDVAPDTNPLKADAKAILAELKSTEKVIPDKTPSRPARRPRP"
     gene            complement(6143..>6446)
                     /locus_tag="VGD38_10635"
     CDS             complement(6143..>6446)
                     /locus_tag="VGD38_10635"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: protein motif:HMM:NF018242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HEY0728516.1"
                     /translation="SGYPDCRPEFYAAFQNVIDLGTKPETNLIIRTPVIGMKKSEIVK
                     KGLDLEAPLQLTWSCYQSSDLACGNCDSCALRLRAFREAGVPDPIPYQLDSNRFAY"
BASE COUNT         1244 a         1748 c         1915 g         1539 t
ORIGIN      
        1 gagtcgctgc agaatcaggt cgagaatacc gcccgtttcg ccggcttcca ccatgtttga
       61 gtaaagctga tcgaaaacct tcgagtggcg gcccattgcc gccgccagtg tcgaaccttc
      121 ttcgacgtcc tgtcgcacct gcagcaggac ctgctggaaa tacttgttgt cctgttgctg
      181 cgcgaggatt tcgagacatt ggaccagggg cagaccggcg tcgatcatca cggaaaactg
      241 ccgcgtaaag atcgacaagt ctttcgcctt tactttcttg cgcccgccaa tcttggggat
      301 gccgatttcg cggccctttt ccttgactga cgtgagcgtg acctgctcgc gccgcaggag
      361 cgcgcgcaac gcttcgcgat tatcggcgac gcgctcgccg accacgatct cgttcaatcg
      421 gttgcggcct ttgaagacat acgttggcat gactatcagc tccgtggctt atctgcttcc
      481 tacgttcggt ctgcttccaa tcggacgtgc ctgtgcatac ggactcgcat gcggtttggc
      541 agtctgagcg gcgtttacgc ccgaaccacg atcgatcaac tcgcgcagct cgtccacgtt
      601 cgacgagcgc tgtaacgcgg tgtctaaaga aatctgacgt ttgtgataca gcgtcgccag
      661 tgcctggttg aacgtctgca tgccgtactt gtcctggccc gtctgcatca tcgagtagat
      721 ctggtgaact ttgtcttcgc gaatcaggtt gcggatggcg ccgttgggaa caaggatctc
      781 caacgccatg gcgcgtccgg ctccttcagc gcgcggcaac agtgcctgac acagaattcc
      841 ttcgagcacc agcgagagct gcgcgcgaat ctgtgcctgc tgatcggaag ggaagacgtc
      901 gatgatacgg ttgatggtcg acgccgcgga gttcgtgtgc agcgttgcga gtgttaagtg
      961 acctgtttcg gcgatgcgca acgctgattc gattgtttcg aggtcgcgca tttcgccgac
     1021 gagcaccacg tccggatcct ggcgtaaagc tgtgcgtaaa gcagcagcaa acccgtgcgt
     1081 gtcggcatta acttcacgct ggttgatcaa acagcctttg tgattgtgca gaaactcgat
     1141 cggatcctcg atcgtcagga tgtgttcgtg acgatcgcga ttgatcttgt cgatcatggc
     1201 tgcgagagtg gttgattttc cggaaccggt tggaccagta accaggatca gaccgcgcgg
     1261 tttttcgcac agttgtttga cgaccggcgg cagaccgagc tcttcgaatg ccttgatctc
     1321 ataaggaatg gcgcggaaga ccgcacccac cgcgccacgt tggttgaaaa ggtttgcgcg
     1381 gaaacgagac aagcctttga cgccgaacga aaaatccagt tcgagatttt cctcgaaacg
     1441 atgcttctgc gcgtcggtga gaaccgaata ggcgagttgt ttcgtgtcag ccgacgtgag
     1501 cacacgatag gattcgagtg gacgaagatg tccgtccacg cgaacctgcg gcggggagcc
     1561 ggtcgtgatg tggaggtccg aaccgccgag ctcagaaagc tttctcagca gttcggacaa
     1621 ggaaatttgg ggaaccgttt cgttcagtcg catccgagtg tctctcccac acagttattt
     1681 gttgctgatt ggttcagctt tagcacgcag cgtctcgatg taacgatccg cttcttttga
     1741 catgcgatcg gcaaactcga gcgatgaatc ggtggtcagc ccgtaaatgc ggccgcccgc
     1801 ttccgtgaaa tagaacgtcc acgctctttc cggagtcagc gtatcgccgg gtgtgcgagc
     1861 catcacgacg aacacgcgct tgccgtttac ttcgcggatg aagtcgttgg tcacccaacc
     1921 accagccgcg accatcttgt cgatcacgat ccggcgcaga tccgcgacag gcaatcccgc
     1981 cagcatgttt ttctcttcac gagaagtcag gaacaccgga ttcggccggc tgagtgcaac
     2041 cactgaaaga ctcatctggc ccggcagtgt tgccgccggc gatttcaccg acgcgttcaa
     2101 gctgccgacc acgcgtggtc tcgttgcgct gttcggagtt gcgtgagctg cttgtacgtt
     2161 tggtgtaacg gcggccggtt gtgaatctgt tgtcacgacg atcggctgtg ccgggaccgg
     2221 ttgagcagtc ggggctgccg caacgcgttg cgtgttcgca gccgtgtaag ccggaggcgc
     2281 gggcaacatg ctgatgccca aagagctttc cggaatgact ggaaccgatg gaccaccaac
     2341 ggctgacaga tcgccgaccg gaacattctt cggcagcgcc aacattgctt tgcggtgagc
     2401 tgctaaagcc gcggcggcct cacgtttctg acgtagacga gcgcgatatc gccgccacca
     2461 cgcacgagag cgataacgat actggcgctt ctttgaaacc tgtacacttt gcctgacgcc
     2521 gtgcgcttca ttcgaaaagg gcaacatcac gcccacggac agcaccagga ttagcgcgat
     2581 agcaattgtt cttaacatgc tcggttctcc tcgaattagg cgaccgtctc gcgaacaact
     2641 tcttcaatcg tcgtcacgcc gtcgcgaatc ttgaatagtc ccgattcacg cagcgtgatc
     2701 atgccgtcgt cgatcgcctt tttccttaat tcaagtgcgg aagcaccgat caagatcaac
     2761 tcgcgaagct cgtcggttat ttccatcact tcgtaaagac cgattcgtcc tttgtagccg
     2821 gtgttgttac aggtcgcaca tcccttgcct ttgaacgtct tgagagtcct cgcttcttct
     2881 ggcgagaaac cgacttcaat cagtgcttcg ggcggagtcg gatggtcctg tttgcaatcc
     2941 ttgcagatac gacggatcag tcgttgtgcc tggatgaggt ttacgctggt ggcgacaaga
     3001 aaaggttcga tgcccatgtt catcaggcgg gaaattgttg agggagcatc attggtgtgg
     3061 agagtggaaa gcacgaggtg accggtgagc gcggctttga tggcgatttc ggccgtttcg
     3121 aagtcgcgga tttcaccgac cagaacgatg ttgggatcct ggcgcaggaa agcgcgcagc
     3181 gcggccgcga agttcaagcc gatctgctcc ttcatctgca cctggttgat gcccatcagg
     3241 ttgaactcga cggggtcttc ggccgtcatg atgtttgtgt cgactgtgtt caacgactgc
     3301 agggctgagt agagcgtgtt tgttttaccg ctgccggttg gaccagtgac gagcaccatg
     3361 ccgtaaggct tggagatgtt gcgctgaaac tttgccaacg actcaggctc gaaaccgagc
     3421 ttggtcatgt cgagcatcag gttctgtttg tccagcaaac gaagcacgac tttttcgccg
     3481 aagagcgtcg gcagggtaga aacgcggaag tcgagctcgc gcgaacgcga gtcgactttg
     3541 actttgatct tgatgcggcc gtcctgcggg agtcgcttct cggagatgtc gagcttcgac
     3601 atgatcttca cgcgcgagat caatgcgtcg cgcatcttca aaggcggatg catcacgtcg
     3661 taaagcacgc cgtcgatacg gaagcggatg cgtaactctt tttcgtaggg ttctacgtgg
     3721 atgtcggatg cgccgcggcg aagcgagtca accagcagca cgttgacgag acggaccacc
     3781 ggcgcgtctt cgctcatgcg cgagagcgtc gaaaggtcga tctcttcgtt gtcttcgagt
     3841 acctcgacgt cttccgagtg ctcggtgtcg aagtcgatgc tgtcgagtga aacgagatcg
     3901 tcgtgcgtga tggcgccgtt gccgttcttt gaagtcttgg cggctttttc gaacgacgcc
     3961 tcttcggctg cggttgaagc gagttcgatt tcgcgcgagg tgccgtaata cttcgcgatg
     4021 gcctgttgca cgctgccttc ggcgacgacg acaggttcga cgttcaagcc ggtcatgaac
     4081 ttaacgtcgt cgagcgcgaa tacgttggtc ggatcgacca tcgcgagtgt gagagttgcg
     4141 ccgacgcgtg agagagggag gaccgagtgt ttttgtgcga cttcctgcgg gatgagacgg
     4201 agaactgcgg gatcgatgtt gaagagatcg agattgacgg aaggaatgcc gtattgccgc
     4261 gagaggacgg cagtgatcat gtcatcactg accaggccca gtttgaccag attgaagccg
     4321 agccggccac catgttcgcg ttggtagtcg agtgcctctc tcaggttttg agggctaata
     4381 agattttcgc gtacgagaat ttcccctaat ttggctgaca tttgtgcctt ctactgggcg
     4441 cggtaaatgt gttcccggta ctggattgga ttggaggcgc ccgactttga gggcgcgagg
     4501 catgctggtc tgctctaatc caacgatgtg gccaacatcg ttgtgcgttc atagtacagt
     4561 ttgaacgcga agagtgtcaa gattcgaatt ccacgaaaac tcgtggagaa tctcacacat
     4621 acggacgtga gaaagcgaaa gggccgcaag ttcctgaagg aacgctgcgg cctttcgact
     4681 cagtctctca agttgattac ggacgaggtc tgcgagctgg acggctcggg gttttgtctg
     4741 gaatgacctt ctccgtgctc ttcagttcag caaggatcgc cttcgcgtct gctttcagcg
     4801 ggtttgtgtc aggcgcgacg tcgacaaagt gctggaggta gtttgctgcc tcctggaact
     4861 ttgccttgtc ctgttgtgca tacagcgcga gtccggcgcc gagattggct tcgggactgt
     4921 caggctggct ttgcaggacg gcctgaaact caagcagggc tttgtcggcc tggcctgagt
     4981 cgagcagcat ctgcgccgcg tcgagctgtg cctttgattt cttggccggg tcctgttcga
     5041 ccgcgatgta gtccttgaac gccgccaagc cttcatccgc tttagtcgga tcggctttgc
     5101 tgacgtacag gcgcatcgat tcggagttgg tcagcatcgc tgcgtacttg ttcttgttgt
     5161 aacggtccag ttcagcagga tcggtcggcg ctgtctggcc tttgagcatc gacactgcct
     5221 tcgtggaagt ctcggcggct gctttgaagt cgcctttagc agcgtcgagc gcggccgtgc
     5281 ggccggcgtc gtcgagtgac ttgttcgtga ttgcggagtt gtaacgctcg actccgcgtc
     5341 ctttcaaagc cacggctttg ttggtcagaa gcgccggctg ttcgggatct gctacgagac
     5401 cttcgtcata cgccgcgatt gctgccgtga atttctggac cgcctcgtcg gtgttcttcg
     5461 cgcggctggc ggtgttcgcg gcagtcagtg cttcatttcc ggttttgaac gtgcgtgcga
     5521 tgacctcgtt ggcttccgtg attttcttgt tgccggcttc gatctcggcg tttttctttg
     5581 ccagttcctc catcttggcc ttgtcagccg cgctcggagc gcctcccgcc ggcggattgg
     5641 ggttcgtgcc gccgaccttg tcgagatctt cacgcgtgag cacgcggccg tcgcccggcg
     5701 tcactgtgat ttcgaccggc gcgccgcggc ccactttcac accgggcaca aagtttggcg
     5761 tcgcggtcgc atgactcgcg acaacggtat atgtgccgat gaagggcaga cccgcgaaaa
     5821 caaactcgcc gttcttgttt gttttcgtgt cgtactgggc cttcatgtcc gttcggaaaa
     5881 catcgattcg cgcgccggca aggggaaccg tttgcccgtc ggcctgcttc atcatgacct
     5941 taccgcggag ctcggcggtt tgtgcgaaag ccggcactga ggcaaccgcc aaaaggatgg
     6001 cgactgcgag tgctccaata aagtgtttac cagtcatttg cttcagattc ctccctgccc
     6061 ggggcttctc aggacgagcc gtaagatgca cccttactaa tttgcggttg taacgataag
     6121 cacccgagat tttgcgtaaa acttaataag caaaacgatt actgtcaagc tggtaaggaa
     6181 tgggatcggg aacacccgct tcacgaaaag ctcgcagccg cagggcgcac gaatcacagt
     6241 tgccgcaggc aaggtcggaa gactggtaac aagaccaggt gagctgcaac ggcgcttcga
     6301 ggtccaaacc ctttttcacg atctccgact tcttcattcc gatcacgggc gtcctgatga
     6361 tcaggttggt ttcgggcttt gtgccgaggt cgatcacgtt ttgaaacgcc gcgtaaaact
     6421 ccggacggca gtcgggatag cccgag
//
LOCUS       DASWTX010000698         2948 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_118428, whole genome shotgun sequence.
ACCESSION   DASWTX010000698 DASWTX010000000
VERSION     DASWTX010000698.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2948)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2948)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2948
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118428"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1462
                     /locus_tag="VGD38_10640"
     CDS             <1..1462
                     /locus_tag="VGD38_10640"
                     /inference="COORDINATES: protein motif:HMM:NF027637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HEY0728517.1"
                     /translation="LPSTIENASGPHVNDPRTGEILESDIQYYHNVMNLNRSWYFLQA
                     GPLDPRAKKLPLPDDLMGELVRYVIAHEVGHTLGFQHNMKASATYPAEKLRNAEWLKT
                     MGHTPTLMDYSRFNYVAQPEDNIPVAALIPGIGPYDKWATMWGYKPIPSARTAQEEKP
                     TLDQWAREQDAKPYLRFSTADARGSDPGENTEAVGDADAIASTALGIKNLKRVADMLL
                     PATTHTGEAYDDLEELYIRMLGQWATELNHVTAIVGGFNSQQKHAGQDGVRFVIVPKE
                     RQAAAVRFLNENAFATPSWALKPEILRRIEPLGATARVNAAQERILNSLFSNTRFDRL
                     VEQEAIDGVVAYRPADFMSDVRRGIWSEIEPGAGAVRIDVYRRNLQNSYIDLLSNKLN
                     LRPSVTDDYRALIKQELRDLSTAITAAMQRTADRATRAHLGDARDQIAKALDPKFAPP
                     ATPAAPAFPFGIDDSEDPFSFNCWPDYAIRIPRDNQ"
     gene            complement(1466..>2948)
                     /locus_tag="VGD38_10645"
     CDS             complement(1466..>2948)
                     /locus_tag="VGD38_10645"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0728518.1"
                     /translation="KHHPTAFFVMIACNLLAHAASVTEVYLALQMLGFETQVAQAYII
                     ESLTKVINAVFAFVPGTIGVYEGGTEVILQKGLGFTPAAGLALALVRKAAIVAWTSAG
                     LIVLTWRTLPNAWRRILDRSPRLQLLMDSLVFSNIAHRPARTAVSVLGTAVGVLLIVF
                     TVGLAHGVLHERGRRESNIGAEIMIRASGSMSLGGSQFRLPVAHAAELAQIEGVRAAT
                     PVGQTLDKSDSGFGQRLIDGINYDEYAAIAQLTMREGRKLELSGDEAIIDPEWQRSRN
                     AKVGDTVKLFERQFKIVGVYEPPGGGRIKIPLRTMQEQEGADNRASGILIACVDPARQ
                     DEVAARILRRFPEDQLVFTRDLPEIYASGVPALNVFIKVVVGVAAAISMLVILLAMYT
                     TVTERTRQIGILKSLGMSKTAIAWVIEQEAIIVSVLGVAVGVVLTLLARAAVMRATSL
                     TIEIEPRWVLIALGVGLLGGSIGALYPALRAARQDAVEALSYE"
BASE COUNT          632 a          904 c          873 g          539 t
ORIGIN      
        1 ccttccgtca acgatcgaaa atgcttccgg tccacacgtc aacgatccgc gcaccggcga
       61 gattctggag tcggacattc agtattacca caacgtgatg aacctgaatc gctcgtggta
      121 cttccttcag gctggaccac tcgacccacg tgcgaaaaag ctgccgctgc ccgacgatct
      181 catgggcgag ctcgttcgct acgtcatcgc gcacgaagtc ggtcacacgc tcggtttcca
      241 gcacaacatg aaggcgagtg cgacctatcc cgcggagaag cttcgcaatg ccgaatggct
      301 caagacgatg ggccacacgc cgacgttgat ggactattcg cgtttcaact acgtcgctca
      361 gccggaagac aacattccgg tcgcagcgct cattccgggc atcgggccat acgacaagtg
      421 ggccacgatg tggggctaca aaccgatccc gagcgccagg actgcgcaag aggagaagcc
      481 gacgctcgat cagtgggcgc gcgaacagga cgcgaaaccg tacctgcgct tttcaaccgc
      541 tgacgcgcgc ggctctgatc ccggcgaaaa cacggaagca gtcggcgacg ccgacgcgat
      601 cgcgtctacg gctttgggaa tcaagaacct gaagcgcgtg gcggacatgc tgttgccggc
      661 caccacgcat acgggcgaag cgtacgacga cctcgaagag ctttacatcc gcatgttggg
      721 ccaatgggcc acggagctga atcacgtgac cgccatcgtc ggcgggttca actcgcagca
      781 gaaacacgcg ggacaagacg gcgtgcgttt cgtgatcgtg ccgaaggaaa gacaggcggc
      841 tgcagtgcgc ttcctgaacg agaacgcgtt tgcgacgccg agctgggcac tgaaaccgga
      901 aattctccgg cgcatcgaac cgttgggcgc aaccgctcgc gtgaacgccg cgcaggaacg
      961 aattctcaac tcgctcttca gcaacacgcg tttcgatcgt ctcgtcgaac aggaagcgat
     1021 cgacggcgtt gtggcttatc gtccggcgga tttcatgtca gacgtgcgcc gcggcatttg
     1081 gagcgagatc gaaccgggcg cgggcgcggt gcgcatcgac gtttatcgtc gcaacttgca
     1141 gaactcgtac atcgatctgc tctcgaacaa gctgaacctg cggccgtcag tcactgacga
     1201 ctaccgcgca ttgatcaaac aggaactgcg cgatttgagc accgccatca cagcggcgat
     1261 gcagcgcacc gccgaccggg cgacgcgggc acaccttggg gatgcgcgcg atcagattgc
     1321 gaaggctttg gatccgaagt ttgccccgcc ggcgactcca gccgcgccgg cgtttccatt
     1381 cggaattgac gacagtgagg atccgtttag tttcaactgc tggcccgact acgcgattcg
     1441 cattccgcgt gacaaccagt aagaactact cgtaactcag cgcttcaaca gcatcctggc
     1501 gggcagcacg cagtgccgga tacaaggcac caatgctccc gccaaggagg cccactccga
     1561 gagcgatcaa gacccagcgc ggttcgatct cgatcgtcaa actcgtcgct cgcatcaccg
     1621 cggcgcgcgc cagtaatgtc agcactacac cgacagccac acccagaacg ctgacgataa
     1681 tcgcttcctg ttcgatcacc cacgcaatcg ccgtcttcga catgccgagt gatttcagaa
     1741 ttccgatctg tctcgtgcgt tcggtgacgg tcgtgtacat cgccagcaag atcacgagca
     1801 tgctgatcgc ggccgcaacg ccgacgacga ccttgatgaa cacattcaac gccggtacac
     1861 cgctcgcgta aatctcaggc aggtcgcgcg tgaagacgag ctgatcttcc ggaaagcgcc
     1921 ggagaatgcg tgcggcaacc tcgtcctgcc tggcgggatc gacacacgcg atcaggatcc
     1981 cggacgcgcg attgtccgcg ccttcctgtt cctgcatcgt gcgtaacgga atcttgatgc
     2041 ggccgccgcc gggcggttcg taaacgccga cgattttgaa ctggcgttca aacaacttca
     2101 ccgtgtcgcc gactttcgcg ttgcggcttc gttgccactc cggatcgatg atggcttcgt
     2161 cgcccgacag ttcgagtttg cggccctcac gcatcgtgag ctgcgcaatc gcggcgtatt
     2221 cgtcgtagtt gatgccgtcg atcagtcgtt gaccaaaacc ggagtcgctt ttgtcgagtg
     2281 tttgtccgac gggcgtcgcg gcgcgaacac cttcgatctg cgcgagctca gccgcgtggg
     2341 ccaccggcag acgaaattgc gagccgccga gactcatgga acccgacgcg cgaatcatga
     2401 tctcggcgcc gatgtttgat tcgcgccggc cgcgttcgtg caaaacaccg tgagcgagac
     2461 cgacagtgaa aacgatcagg agcacgccga cggcggtgcc gagaacgctg accgcagtgc
     2521 gcgcaggtcg atgagcaatg tttgagaaga cgaggctatc cataagaagt tgtaaacgag
     2581 ggctgcgatc caggattcgt cgccacgcat tcggcagcgt gcgccaggtt agtacgataa
     2641 ggccggcgga agtccacgcc acgatcgcgg ctttacgcac gagcgcgagc gcgaggccgg
     2701 cggcaggcgt gaaaccgaga cccttttgca ggatgacttc ggtgccgcct tcgtacacgc
     2761 cgatcgtgcc ggggacgaat gcgaacaccg cgtttatgac tttcgtcagc gattcgatga
     2821 tgtaagcctg tgcgacctgc gtctcgaagc cgagcatctg tagtgcgaga taaacttccg
     2881 tgacactcgc agcatgggcc agcaggttac aggcgatcat cacgaagaac gccgtcggat
     2941 gatgttta
//
LOCUS       DASWTX010000699         1667 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_360311, whole genome shotgun sequence.
ACCESSION   DASWTX010000699 DASWTX010000000
VERSION     DASWTX010000699.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1667
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_360311"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..305
                     /locus_tag="VGD38_10650"
     CDS             <1..305
                     /locus_tag="VGD38_10650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728519.1"
                     /translation="ARLRACSPTLVYGGHGDPVHDFEELFHRYFRAVQQRQSEVIGFV
                     GKDGVTAWDVSRRMFPDADDVHRFLAVSEAVAHLDLAHSEGKVALELKGAVEIYKK"
     gene            374..1411
                     /locus_tag="VGD38_10655"
     CDS             374..1411
                     /locus_tag="VGD38_10655"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEY0728520.1"
                     /translation="MKVKYAIGLLAALILTVAPVLAQQSAPEPPEPPEDLNTFSLFVE
                     GGGFLGVYGEDINNENMGRYRLNQARGVGITRVLADSPAEKAGLRKDDVILRFDGENV
                     TSVRKLNRLVSEIAPDHSVKITISRNGAEQELTATIGKVSDKSSARSLFRMQPRVWKF
                     EGPHFDTDKFNNELNKLNELNKLNDNNDFNFFFTNSRRIGVSTVELTKQLADYFGVPA
                     GKGVLVTSVVEDGPAAKAGVKAGDVITAVDGQEVDSPGDVSRVISGKKEGDVTLTVIR
                     NKSQQTFRVTPREGGFTGTMGRPTVGRQIVIPRIQIPDVNISVPAVNIQLPRVIVSPR
                     IRVQRGVYGPI"
     gene            1468..>1667
                     /locus_tag="VGD38_10660"
     CDS             1468..>1667
                     /locus_tag="VGD38_10660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728521.1"
                     /translation="MKAELEKLIALQNLDTTIRRLEKELEAIPQRRAEIEGEFDRRAF
                     EIRALETRRDEAKHERARLEIEV"
BASE COUNT          415 a          445 c          488 g          319 t
ORIGIN      
        1 tggcgcggct gcgtgcgtgt tcgccgacac tggtttacgg cggtcatgga gatcccgtcc
       61 atgattttga agaactgttt catcggtatt ttcgcgcggt gcagcagcgc cagagtgaag
      121 tgattgggtt cgttggcaaa gacggcgtga ccgcgtggga cgtttcgcgc cggatgtttc
      181 ccgatgcgga cgacgtgcac cggtttttgg cggtgtcgga ggcggttgcg catctcgatc
      241 tggcgcacag tgaaggcaag gtggcgttgg agttgaaagg agcggtggag atttacaaaa
      301 aataaaaaaa caaatggaac ctccgccacc cacctgcgtg taaagcgcaa actcttccgg
      361 aggatttcaa aaaatgaaag tcaaatatgc gattggcctt ctggccgctc tcattctgac
      421 tgttgctcca gttctcgctc aacaatctgc acccgagccc cccgaaccgc ccgaagatct
      481 caacacgttc tcgcttttcg ttgaaggcgg cggattcttg ggcgtctacg gcgaagacat
      541 caacaacgaa aacatgggcc gctatcggct gaaccaggcg cgcggcgttg gcatcacgcg
      601 cgtgctcgcc gacagcccgg cggaaaaagc cggcctgcgc aaagacgacg tgatcctgcg
      661 tttcgacggc gaaaacgtga cgagcgtgcg caagctcaac cgccttgtct cggagatcgc
      721 gcccgatcat agcgtgaaga tcacgatcag ccgcaacggt gcggaacagg aactaaccgc
      781 aacgatcggc aaagtcagcg acaagagcag tgcccgcagc ttgttccgaa tgcaaccacg
      841 cgtttggaaa ttcgaaggac cgcacttcga tacagacaag ttcaacaacg agctaaacaa
      901 gctcaatgag ctaaacaagc tcaacgacaa taacgacttc aacttcttct ttacgaacag
      961 ccgccggatc ggcgtcagca ccgtcgaact gaccaaacag ctcgcggact acttcggcgt
     1021 cccggcaggt aaaggcgtcc tggtcacgtc agttgtcgaa gatggtccag ccgcgaaggc
     1081 gggcgtcaaa gccggcgacg tgatcaccgc ggtcgacggc caggaagttg attcaccggg
     1141 tgacgtctcg cgtgtgatca gcggcaagaa agagggcgac gttacgctca cggtgattcg
     1201 caacaagagc cagcagacgt ttcgcgtgac gccgcgtgaa ggtggcttca cgggaacgat
     1261 gggccggccg accgtaggac ggcagattgt tattccgcga atccaaattc cggatgtaaa
     1321 tatctccgta ccggcggtca acattcaact gccacgtgta atagttagtc cgcgaatcag
     1381 ggtccagcgc ggggtttacg gcccgatctg aaccgttcaa tgacaccgct tgcaccaact
     1441 actcggattg tgtgatgatc cgagctgatg aaagcggaat tagagaagtt aatcgctcta
     1501 cagaatctgg acacaacgat acgaagatta gaaaaagagc tggaagcgat accgcaaagg
     1561 cgcgccgaga tcgaaggaga gttcgatcgg cgcgcttttg aaattagggc cctcgaaacc
     1621 cgtcgcgatg aagccaagca tgaaagggcc cgtttggaaa tcgaggt
//
LOCUS       DASWTX010000700         2943 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_75349, whole genome shotgun sequence.
ACCESSION   DASWTX010000700 DASWTX010000000
VERSION     DASWTX010000700.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2943)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2943)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2943
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75349"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..991
                     /locus_tag="VGD38_10665"
     CDS             <1..991
                     /locus_tag="VGD38_10665"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY0728522.1"
                     /translation="AGLLWILDASINITMEPFRAFVADKLPEEQRTLGFVMQSWFIGI
                     GQTLANALPYLFSALGVVGVMATGIPLSVDYSFKIGAIVFLIAVLWTVLTTKEYPPED
                     MEAFQRLRRERKGIAAGFAEIFSSLAEMPDTMKQLAVVQFFTWFALPCMWQFFSVAIA
                     RHVFGAPNEQSPLFAEATEWGGLCFAAYNVVCFQVAFALPWLANRLGRKTVHMIALVC
                     GGLGLISVLFVTNKFVLFASMAGVGIAWASILSMPYVMLSTAVPPARMGVYMGVFNLF
                     IVIPQIVQSLIMPNIFNNVLGGDARNAVVLGGFSLLIAAATVLIVRDVHERAT"
     gene            1078..>2943
                     /locus_tag="VGD38_10670"
     CDS             1078..>2943
                     /locus_tag="VGD38_10670"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HEY0728523.1"
                     /translation="MRDGVIYEIYPRAFSQRGDFNAITARLDELKDLGVTILWLMPIH
                     PIGQEKKKGTIGSPYAVRDYYAINPDYGNANDLKRLVREAHARGLKVIIDIVANHTSW
                     DSVLMKHPEFYKRDAKGNITYPYDWYDIAALNYNNRELRSYMIDMLKYWIREFDLDGF
                     RCDVAGEVPTDFWETARDELMKVKPDIVLLAEAHKPELLVKAFDLDYSWPLHSALTKV
                     LHGNAPASVLREEWEKEVKESPKDALHMRFSDNHDERRAIARFGERAALAASAFVFAL
                     DGVPMIYNGMEVGDTTESGAPALFEKLPIFWAFGERRPEFRKFYKEMMARRRGSKALR
                     RGTLEWIQNSDESRVVSFVRRAEGEEVLVTINLSSMPFKGTVRGAPVSLAAWEFRIAS
                     STGGDFRADGRLDSRWPTAAKNGFGTSVTLESKVWFTLANGVMTEVFYPTIDSPKVKR
                     LQLHVHTDAGVEKELHDTHHRMELPNPASLTFRQVNSAKSGEYTFTKTYVTDPQRDAV
                     LIDVQFESRKPARLSVHYDPSLKNNGNSALVSNCATEPRTNLNCTIALGFGENPASAT
                     ATARSSLKRGFAAVKQEYEAGWKGYVSGLPRVEARHQRQFDMAAMVLRGLEDKTHR"
BASE COUNT          578 a          755 c          947 g          663 t
ORIGIN      
        1 cgccggcctg ctctggatac tcgacgccag catcaacatc acgatggaac cgttcagggc
       61 gtttgtcgcg gacaagttgc cggaagaaca acgcacgctc gggtttgtga tgcagagctg
      121 gttcatcggc atcggtcaga cgttggcgaa tgcgctgccg tatctttttt ccgcgctcgg
      181 cgtggtgggc gtgatggcca ctggcatacc gctttcggtt gattactcgt tcaagatcgg
      241 cgcgattgtt tttctcatcg cggtgctgtg gaccgtgctg acgacgaaag agtatccgcc
      301 ggaagacatg gaagcctttc aacgtttgcg ccgcgagaga aaaggtattg ccgcaggttt
      361 cgcggagatc ttttcatcgt tggccgagat gccggacacg atgaagcagc tcgcggtggt
      421 ccagttcttc acgtggtttg cgttgccgtg catgtggcag ttcttcagcg ttgcgatcgc
      481 gcggcacgtg ttcggcgccc cgaatgagca gtcgccgttg tttgcggagg caaccgaatg
      541 gggcgggttg tgtttcgcgg cttacaacgt tgtctgtttt caggttgcgt tcgcgttacc
      601 gtggttggcg aaccgcctgg gccgcaaaac ggttcacatg atcgcgctcg tttgcggcgg
      661 cttgggtctg atctcggtgc tgttcgttac gaacaagttc gtgctgttcg cgagcatggc
      721 gggtgtcggc atcgcgtggg cgtcgatcct gtcgatgcct tacgtgatgt tgtcgacggc
      781 ggtgccgccg gcgcgcatgg gcgtttacat gggcgtgttc aatttgttca tcgtgattcc
      841 gcagatcgtg cagtcgctga ttatgccgaa catcttcaat aacgtgctcg gcggcgatgc
      901 gcgcaatgcg gttgtgctcg gaggctttag tctgttgatt gcggcggcca cggttttgat
      961 cgtgcgcgac gtacacgaga gggccacttg aatttgcttt tacgtctgct cctaatccct
     1021 tttctcttgg ccgcaagcac gggcgctctg gcacaacagc ggacggctcc cgactgggtg
     1081 cgtgacggtg tcatatacga gatctacccg cgcgccttct cacaacgagg agacttcaac
     1141 gcgatcaccg cgcgtctcga cgagctcaag gatctgggag tgacgatcct gtggctgatg
     1201 cccattcacc cgatcggtca ggaaaagaag aagggaacga tcggcagccc ttacgccgtg
     1261 cgcgactact acgcgatcaa tcccgattat ggcaatgcca acgatctgaa gcgtcttgtt
     1321 cgcgaagcgc acgcgcgcgg gttgaaagtc attatcgaca tcgtcgcgaa ccacacgtcg
     1381 tgggacagcg tgttgatgaa gcatccggag ttttacaagc gcgacgcgaa aggcaacatc
     1441 acctatccct acgattggta cgacatcgcc gcattgaact acaacaaccg cgaactccgc
     1501 agctacatga tcgacatgct gaagtactgg attcgcgagt ttgacctgga cggctttcgc
     1561 tgcgatgtgg cgggcgaagt gccgacggac ttttgggaaa cggcgcgcga tgagttgatg
     1621 aaggtcaagc cggacatcgt gttgctcgcg gaggcgcaca aacccgagtt gctggtgaag
     1681 gcgttcgatc tcgattactc gtggccgttg cacagtgcgc tgacgaaggt gttgcacgga
     1741 aacgcgcccg cttctgtttt gcgcgaggag tgggagaagg aagttaagga gtcgcccaag
     1801 gacgcgttgc acatgcgctt ctcggacaat cacgacgagc ggcgcgcgat tgcgcggttc
     1861 ggcgaacgcg cggcgcttgc ggcttcggcg tttgtgttcg cgctcgacgg cgtgccgatg
     1921 atctacaacg gtatggaagt gggcgacacg actgagtccg gcgcgcccgc gttgtttgag
     1981 aagttgccga tcttctgggc ctttggcgag cggcgtccgg agtttcgcaa gttctacaaa
     2041 gagatgatgg cgcggcggcg tggcagcaaa gcgctgcggc gcggaacgtt ggagtggatt
     2101 cagaattctg acgagtcacg cgtggtgtcg tttgtgcggc gtgctgaagg tgaagaggtt
     2161 ttggtgacga tcaatttgtc cagtatgcca tttaagggaa cggtacgagg ggctcccgtt
     2221 tctctcgcgg cgtgggagtt cagaatcgcg agtagtacag gaggggattt tagggcggat
     2281 gggagattgg attcgcgttg gcccacggcg gcgaagaatg gatttgggac gtcggttacg
     2341 cttgagtcga aagtgtggtt taccctcgcg aacggcgtga tgacggaagt gttctacccg
     2401 acgatcgact caccgaaggt gaagcgactt cagttgcacg tgcacactga cgccggagtc
     2461 gaaaaggaac tccacgacac gcatcaccga atggagttgc cgaacccagc atcgctgacg
     2521 ttccggcagg ttaactctgc gaaaagcggc gagtacacgt tcaccaaaac ttacgtcacg
     2581 gatccgcagc gagacgctgt gctgatcgat gtgcagtttg agagccgaaa acctgctcgg
     2641 ctttcagttc attacgatcc gtcgttgaaa aacaacggta actcggcgct ggtgagcaat
     2701 tgtgctactg agccacgcac gaatttgaac tgcacgatcg cgctcgggtt tggcgagaac
     2761 ccggccagtg ccaccgccac cgcacgtagc tcactgaagc gtggttttgc cgcagtaaag
     2821 caggaatatg aagcagggtg gaagggttat gtgtccggtt tgccgcgcgt tgaagcaaga
     2881 catcagcggc agttcgacat ggctgcgatg gtcctgcgtg ggcttgaaga caagactcat
     2941 cgc
//
LOCUS       DASWTX010000701         1954 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_97504, whole genome shotgun sequence.
ACCESSION   DASWTX010000701 DASWTX010000000
VERSION     DASWTX010000701.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1954)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1954)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1954
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97504"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..809)
                     /gene="rlmN"
                     /locus_tag="VGD38_10675"
     CDS             complement(<1..809)
                     /gene="rlmN"
                     /locus_tag="VGD38_10675"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0002935 - tRNA
                     (adenine(37)-C2)-methyltransferase activity [Evidence
                     IEA];
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0070040 - rRNA
                     (adenine(2503)-C2-)-methyltransferase activity [Evidence
                     IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0030488 - tRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEY0728524.1"
                     /translation="MTQRVELIGLSQPELVEFVEGLGEPAYRGRQIFAALQHRRLRSF
                     DEMTDLPKELRARLNEVAQASTLNVGSRYISSDGTRRYLMKTHDGLPVETVFIPEEHR
                     DTICFSSQSGCPLQCTFCLTAQLGLLRSLTPGEIVEQILIALNDAYGAGVKPPRGTNL
                     VGMGAGEPFLNFDSLLKALRIMADRNGLYIVPNRVTISTAGIVPRILDLAKVEDRPHL
                     AISLAAPTDELRNELMPINKRWPLEELLNACKIFEKTLKPGELFTFEYVMLA"
     gene            916..1719
                     /locus_tag="VGD38_10680"
     CDS             916..1719
                     /locus_tag="VGD38_10680"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY0728525.1"
                     /translation="MAIGCAAFVYGLRWLEAAMTFHPVRLTADQRVSPPNGAEEVWFT
                     AKDGTRLHGWYFAREQKPQTTIIYLHGNGGNISNVDWLGESLATRGFSVLLFDYRGYG
                     LSAGSALDEEELYLDGEAAWEFVVNEKKAAPETVVLYGQSLGTAIACDTASRKKAGAL
                     ILESGFSSASSLAETALPWLPRFLHRLGRNRFESARKLESVRIPVLVSHGDPDDVIPT
                     NEGRALFAAANEPKQLLIVPGAGHNVFGSAGTAYLDQIDQFIRRATEPR"
     gene            complement(1703..>1954)
                     /locus_tag="VGD38_10685"
     CDS             complement(1703..>1954)
                     /locus_tag="VGD38_10685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728526.1"
                     /translation="AGIDQTTLRPSVDVEYALMKDGKEVGKQAEDWKGLSDSGQRLTL
                     ARLIDTRQLAAGDYEVAIRIRDRVTGQSLSPSQKFSVVQ"
BASE COUNT          389 a          521 c          613 g          431 t
ORIGIN      
        1 gcgagcatga cgtattcgaa cgtgaacaac tcgccgggct tgagcgtctt ttcaaagatc
       61 ttgcaggcgt tgagcaattc ttcgagcggc caacgcttgt tgatgggcat cagttcgttg
      121 cgcagctcat ccgttggcgc ggctaacgaa atcgcaagat gcggacgatc ctcaaccttc
      181 gcgagatcga gaatcctcgg gacgatcccg gcggtggaga tcgtgacgcg attcggcacg
      241 atgtagaggc cgttgcgatc ggccataatg cgcagcgcct tgagcagcga gtcgaaattg
      301 agaaacggtt caccggcgcc catgccgacg aggttcgtgc cgcgtggcgg tttcacgccg
      361 gcgccgtaag cgtcgttgag cgcgatcagg atttgttcga cgatctcgcc gggtgttaac
      421 gagcgcaaca aaccgagctg cgccgtgaga caaaacgtgc attgcagcgg gcaaccggac
      481 tgcgacgaga aacagatcgt gtcgcggtgt tcttcgggaa taaaaaccgt ctcgaccgga
      541 agcccgtcgt gagtcttcat cagatagcgg cgcgtgccgt ccgacgagat gtaacgcgat
      601 ccgacgttga gggtcgatgc ctgtgcgact tcattcagcc gcgcgcgcag ctctttcggc
      661 aggtcggtca tttcgtcgaa actgcgtagc cgacggtgct gcagcgcggc aaaaatctgc
      721 cggccgcgat acgccggttc tcccagtcct tcgacaaact cgaccagttc cggttgggag
      781 agcccgatta attcaacccg ctgtgtcatt gcaaatttat cttagcatct gaggtcgttt
      841 cgtacgtatt agtggcagga tcgtatgcgg cggttgttta ggtcacgtga atctcttatt
      901 ggagctgtgg ttgcgatggc gattggctgt gctgcgttcg tgtatgggtt gcgctggctg
      961 gaggcggcga tgacgtttca tcccgtacgg ctgacggcgg accagcgcgt ttcgccgcca
     1021 aacggcgccg aggaggtctg gttcaccgcg aaggatggga cgcgtttgca cggttggtac
     1081 ttcgcgcgtg agcaaaagcc gcaaacgacc atcatctact tgcacggaaa cggcgggaat
     1141 atctcaaacg ttgactggct gggcgagagc ctcgcaacgc gtgggttcag cgtgctgttg
     1201 tttgattatc gcggttatgg cttgagtgct ggctcggcgc tcgacgaaga ggagctttat
     1261 ctcgacggcg aagcagcgtg ggagtttgtc gttaacgaga agaaagccgc tcctgaaaca
     1321 gtggtgcttt acggtcagtc gttgggaaca gcgatcgcct gcgacaccgc gtcgcgcaag
     1381 aaagccgggg cgttgatact cgagtcgggt tttagttcgg cgagctcatt ggcggaaacg
     1441 gcattgccat ggctgccgcg gtttttacat cgtttgggaa ggaatcgatt cgagtcggcg
     1501 cggaaattgg agtcggtgag aatcccggtt cttgtgagtc acggagatcc cgatgacgtc
     1561 attccgacaa acgaaggccg ggcactcttt gcagctgcaa acgaacctaa gcagctttta
     1621 atagtgcccg gcgcgggtca caacgttttt ggctcagccg gaactgccta cctggaccaa
     1681 atcgaccagt ttattcgccg cgctactgaa ccacgctgaa cttctgcgac ggcgagagcg
     1741 actgaccggt gacgcgatcg cgaatgcgga tcgcgacttc gtaatcgccg gctgcgagtt
     1801 ggcgcgtgtc gatcaggcga gcgagcgtca aacgctgacc ggagtcgctc agtcccttcc
     1861 agtcttcagc ttgcttgccg acctccttac cgtctttcat caacgcgtat tcgacgtcga
     1921 ctgacggacg cagcgtcgtt tgatcgatac cggc
//
LOCUS       DASWTX010000702         1537 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_118534, whole genome shotgun sequence.
ACCESSION   DASWTX010000702 DASWTX010000000
VERSION     DASWTX010000702.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1537
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118534"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(136..585)
                     /locus_tag="VGD38_10690"
     CDS             complement(136..585)
                     /locus_tag="VGD38_10690"
                     /inference="COORDINATES: protein motif:HMM:TIGR01994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HEY0728527.1"
                     /translation="MSELSELYQQVILDHNKKPRNFRKLDTANRSAEGYNPLCGDHLT
                     VYLDVEGDAVKEIAFEGSGCAISKAAASMMTQAVKGKSKEQAEALFTEFHSMVTGELD
                     EETDENNLGNLKIFAGVREFPVRVKCATLPWHTLHAALNNKEQVSTE"
     gene            complement(593..>1537)
                     /locus_tag="VGD38_10695"
     CDS             complement(593..>1537)
                     /locus_tag="VGD38_10695"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEY0728528.1"
                     /translation="GATEGINLVMYGYGRKFIGEGDEIIISAMEHHANIVPWQMLCEE
                     KGARLRVIPMNDAGELLLDEYDGLLNERTKLVGVVHVSNALGTINPIKQMIAHAHKYG
                     VPVLVDGAQAAPHMPIDMQDLDCDFYVFSGHKMYAPTGSGVLYGKAELLEKMNPFQGG
                     GDMIKTVTFEKTTYADLPNKLEAGTPAIASQIGLGAAIDYLNAIGREQAAAHEAELLR
                     YATERISAIEGVRIVGTAKDKASVLSFVIDEIHPHDIGTILDQEGIAVRAGHHCAQPV
                     MQRFNVPATARASFAFYNTKEEIDVLARTIERVIEIFS"
BASE COUNT          303 a          477 c          417 g          340 t
ORIGIN      
        1 gagcgccagg gaccacggag gtgttcacga atgctaggga cccacgccga aggcgttcgc
       61 gagtttcagc ccagggttca taccctggga atgtgaaaag acaaagagtc gaactctgga
      121 ggagttcgcg aagagctact ccgtggaaac ttgctctttg ttgttgagcg cggcgtggag
      181 ggtgtgccag gggagggtgg cgcatttgac gcgaacggga aattcccgga cgccggcgaa
      241 gatcttcaag ttacccaagt tgttctcgtc ggtttcttcg tcaagctcgc cggttaccat
      301 cgagtgaaac tccgtaaaca acgcctcggc ttgttccttg ctcttcccct tcaccgcctg
      361 cgtcatcatg ctcgccgcag ctttcgaaat cgcgcagccg gagccttcaa acgcaatctc
      421 cttcaccgcg tcgccttcga cgtcgagata gaccgtcagg tgatcgccgc aaagcgggtt
      481 gtacccctcg gcactgcgat tcgccgtgtc aagcttgcga aaatttcgcg gcttcttgtt
      541 atggtcgagg attacctgct ggtagagttc gcttaattca gacatgggcc aatcaactaa
      601 agatctcaat cacacgttcg attgtgcgcg cgagcacgtc aatctcttcc ttcgtgttgt
      661 agaacgcaaa tgacgcacgc gccgtcgccg gaacgttgaa ccgctgcatc accggctgcg
      721 cgcaatgatg accggcgcga acggcaattc cctcctggtc caggatcgtg ccgatgtcgt
      781 gcgggtgaat ctcatcgatc acaaacgaca gcacgctcgc tttatccttc gcggtgccga
      841 caatccgcac gccctcaatc gccgaaattc gctccgtggc gtatcgcagc aactccgctt
      901 catgcgctgc ggcctgctcg cggccaatcg cattcaaata atcgatcgcc gcgcccaacc
      961 cgatctgcga tgcgatcgcc ggcgtgcccg cttcgagttt attcggcaaa tccgcgtaag
     1021 tcgttttctc aaacgtgacg gtcttgatca tgtcgccgcc gccctgaaac ggattcatct
     1081 tctcgagcag ttcagccttg ccataaagaa cgccgcttcc ggtcggcgcg tacatcttgt
     1141 gacccgaaaa cacgtaaaag tcgcagtcga ggtcctgcat gtcgatcggc atgtgcggcg
     1201 cagcctgtgc gccgtcgacc agcaccggca caccatactt gtgcgcgtgc gcgatcatct
     1261 gcttgatcgg gttgatcgtg ccgagcgcat tcgacacgtg gaccacgcca accagtttcg
     1321 ttcgctcgtt caacagccca tcgtactcgt cgagcagcaa ctcgcccgcg tcgttcatcg
     1381 ggatcacgcg caagcgcgca cccttctctt cgcagagcat ctgccacgga acgatgttgg
     1441 cgtgatgctc catcgccgaa atgatgatct cgtcgccttc gccgatgaac ttgcggccgt
     1501 agccgtacat cacgaggttg atgccttcgg tcgcgcc
//
LOCUS       DASWTX010000703         1542 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_32551, whole genome shotgun sequence.
ACCESSION   DASWTX010000703 DASWTX010000000
VERSION     DASWTX010000703.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32551"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..340)
                     /locus_tag="VGD38_10700"
     CDS             complement(<1..340)
                     /locus_tag="VGD38_10700"
                     /inference="COORDINATES: protein motif:HMM:NF016228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY0728529.1"
                     /translation="MKLVITGALGHIGSGLIHALAPREASEVVLVDNLSTQRYCSLFN
                     LPSGIDWRFVKADVTSAELEDLFAGAAAVIHLAAITNAAESFDIAEEVERVNYFGTQR
                     VALAAAKVGVP"
     gene            complement(337..1410)
                     /locus_tag="VGD38_10705"
     CDS             complement(337..1410)
                     /locus_tag="VGD38_10705"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY0728530.1"
                     /translation="MKKLLVVLEAGDSLPSGVIRGLAYEDLFAEHGFDAQFVSRRPAR
                     LFENRAFPLRQLVEFAPVRNRLMSRAIAANESRIRKLARDVDIIYLNKVSSHELLQDL
                     LKDKHARIVYDFGDAIWLQEWSASQHDDVLRQVDAVTTDNEVTASYVRKVNPNCVVIP
                     DAPALHAFDARRSELSRKPNDRIVLGWLGSPSTAYNLYVVWEALEELFRRHDNLHLRL
                     VGTGDDLRFIPEFENVKFSCVPAYDQSRMVEEVFGMHVGLFPLQNVERCQMRGVFKAT
                     NYMSGEAAVVASPVGQCADFIRDGFNGFLATTKDEWVGKLESLIFDPGLRRGLVENGL
                     ACVRENFRVDQSFAKLKQVLSSV"
BASE COUNT          372 a          511 c          375 g          284 t
ORIGIN      
        1 acggcacacc aaccttcgcc gctgccagcg ccacgcgctg cgtgccgaaa taattcacgc
       61 gctcgacttc ttccgcgatg tcaaaactct ccgcggcgtt cgtgatcgcc gcgaggtgaa
      121 tcaccgcggc cgcacccgca aaaagatctt caagctccgc cgacgtcacg tcggccttaa
      181 caaatctcca atctattccc gacggaagat tgaacagcga gcaataacgt tgcgtggaca
      241 agttatcgac gagcacaacc tcactcgcct cacgcggcgc gagcgcatgg atcagccccg
      301 aaccgatatg gcccaacgca cccgtgatta cgagtttcat accgacgaca acacctgctt
      361 caacttcgca aatgactggt ccacccgaaa attctcgcgc acgcacgcaa gcccgttctc
      421 aaccagcccg cggcgcaatc ccggatcgaa aatcaagctc tccagtttgc cgacccattc
      481 atccttcgtc gtagccagga acccgttaaa cccgtcacgg atgaagtcgg cgcattggcc
      541 caccggcgaa gcgacgaccg cggcctcacc gctcatgtaa ttcgtcgcct taaacacgcc
      601 gcgcatctgg caacgctcga cgttctgcaa aggaaagagc ccgacgtgca tgccaaaaac
      661 ttcttccacc atgcgcgact gatcgtacgc aggcacacac gagaacttca cgttttcaaa
      721 ctccggaata aaccgcagat cgtcacccgt gccaaccagc cgcaggtgca aattatcgtg
      781 ccgccgaaac agctcttcaa gcgcctccca aaccacgtac aagttataag cagtcgacgg
      841 cgaaccgagc catccgagca cgatacgatc gtttggtttg cgactcagct ccgagcgccg
      901 cgcatcgaac gcgtgcagtg caggcgcatc gggaatcacg acacaattcg gattgacctt
      961 gcgcacgtaa ctcgcggtca cttcgttgtc ggtggtcacc gcatcgacct gacgcaacac
     1021 gtcgtcatgc tgcgacgccg accattcctg caaccagatc gcgtcgccga agtcgtaaac
     1081 aatccgtgcg tgtttgtcct tcagaagatc ttgcagcagt tcgtgagacg agactttgtt
     1141 gagatagatg atgtcgacgt cgcgtgcgag tttgcgaatg cgactctcgt tcgcggcgat
     1201 ggcccggctc ataagacggt tgcgcactgg cgcaaactca accaactgcc gcaacggaaa
     1261 cgcacgattt tcaaagagcc ttgccggacg gcgcgaaaca aactgcgcat cgaaaccgtg
     1321 ttcggcaaac aggtcctcgt aagcgagacc gcggatcacg ccgctcggca aactgtctcc
     1381 cgcttccaaa acgacgagca gctttttcat ctaccgcact gcacccgcaa gaaccaacgg
     1441 ctccgcgtcg tgaatctcac cgcaaacgat cgccttcgtt ctcgcgaggc cttgtttgaa
     1501 atcgtaagcc ggacgccaat caaccaggtc gcgaaaacgt tc
//
LOCUS       DASWTX010000704         2626 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_162530, whole genome shotgun sequence.
ACCESSION   DASWTX010000704 DASWTX010000000
VERSION     DASWTX010000704.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2626
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162530"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1798)
                     /locus_tag="VGD38_10710"
     CDS             complement(<1..1798)
                     /locus_tag="VGD38_10710"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HEY0728531.1"
                     /translation="MDQLTQNLVAIVGRENVLSKADELLVYECDGLPQHKHRPRAVVF
                     PSSTEATSEVMRALARAQGPVTPRGAGTGLSGGALALNSGVVIEFARMRKILRIDAEN
                     RLAVVQPGVVNLHVSRAVLPYGLYYVPDPSSQPSCTIGGNIAESAGGIHCLKYGTTTD
                     HVVACRVVLAGGEIVDLGGESDGYDLLGTFVGSEGTFGVVTEATLKLSPVPPAVRTLL
                     AEFGEVDDASHAVSAIIAAGVMPAAVEMMDREIIRAVEASVFAAGLPPDAGAALLIEL
                     DGIEAGLDDEARKVTSICMEYGARNARLARDETERKKLWAARKGAFGAIGRISPDSMI
                     QDAVVPRSRLPEVLRAAYDIAARNELRIANVFHAGDGNLHPLICFDSRFEAQVRRVKE
                     AGRELMEVCVAAGGTITGEHGVGLDKRELLPLVFSEADMNAMLSVRTSFDPLGLCNPG
                     KIIPMLRGCGEARAVPLNPNSAPLTIKASSSSPLKSVTPALRPGPVYPSSTEELSEIM
                     KHAAAERWTVTPAGGMTLLGKSSSNLIVHANHLDKIIEHEPADLIAVAQAGVTLSAFN
                     KALAENGQWLPLDPPDDGRATLGGVIATGLGGA"
     gene            1885..>2626
                     /locus_tag="VGD38_10715"
     CDS             1885..>2626
                     /locus_tag="VGD38_10715"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0728532.1"
                     /translation="MTLPVHADKPVFVADTIIINAVVHTMDKTQPAAEAVAIYAGRIA
                     AVGATKDIKKLAGPTTRTIDAKKRLLLPGFNDAHTHFMSGGFQLSSVDLRDADSPQEF
                     AARIKAFSQKLPKGRWITGGDWDHERWSDAKLPTKELIDSITPDTPVFVSRLDGHMAL
                     ANSLALKLAGVTRQTLDPPGGVIVRDKSGEPTGVLKDAAQSFVWKVIPPASFDEKLAA
                     ARAASNYAAKLGVTSIQDVSAGTDVAVYQ"
BASE COUNT          540 a          845 c          757 g          484 t
ORIGIN      
        1 gcgcgccgcc gagaccggtg gcgatgacgc cgccgagggt ggcgcggccg tcgtcgggtg
       61 ggtcgagtgg gagccattgg ccgttctcgg cgagtgcttt gttgaatgcg ctgagcgtca
      121 caccggcttg cgcgacggcg attaaatcgg caggctcatg ttcgatgatt ttgtcgaggt
      181 gattggcatg aacaatcagg tttgaagatg atttccccaa cagggtcatg ccaccagcgg
      241 gcgttacggt ccagcgttcg gccgcagcgt gtttcatgat ttcggaaagt tcttcggttg
      301 atgacgggta gactgggcct ggacgaagcg ctggcgtgac gctctttaaa ggggatgaag
      361 aagaggcctt aatggtgaga ggcgctgaat tgggatttaa aggaaccgca cgcgcttcgc
      421 cgcagccgcg cagcatgggg atgatcttgc cggggttgca gagacccagg gggtcaaagg
      481 aggtgcgtac gctgagcatt gcgttcatgt ctgcttcgga gaagacgagt ggcaacagtt
      541 cgcgtttatc taaaccgacg ccgtgctcgc ccgtgatcgt tccgcccgct gcaacacaaa
      601 cctccatcaa ctcgcgcccg gcttctttca cgcgccgcac ctgagcttca aaccgcgagt
      661 cgaagcagat caacggatgc agattgccgt cgcccgcatg aaacacgttt gcgatgcgca
      721 gctcatttcg cgccgcgatg tcgtacgctg cgcgcagcac ttcgggcaga cgcgaacgcg
      781 gcacgaccgc gtcctgaatc atcgaatcgg gcgagatgcg cccgatcgcg ccaaacgcgc
      841 ccttgcgcgc agcccaaagc ttcttgcgct ccgtttcatc gcgcgcgaga cgcgcgttac
      901 gcgcgccgta ttccatgcag atgctcgtca ccttgcgcgc ttcgtcgtcg agtcccgctt
      961 cgatcccgtc caactcaatc aacaacgcgg cgcccgcgtc aggcggaagc ccggccgcaa
     1021 acacactcgc ctcaaccgcg cgaatgatct cgcggtccat catctccacc gccgccggca
     1081 tcacgccagc cgcgatgatg gccgagaccg catgactcgc atcgtcaacc tcaccaaact
     1141 ccgcgagcag cgtgcgcacc gccggcggaa ccgggctcaa cttcagcgtc gcttcagtca
     1201 caacaccgaa ggttccttcc gatccaacaa acgtacccag caaatcgtat ccgtcagatt
     1261 caccgccgag atcgacgatc tcgcctccgg ccagcacgac acgacacgcg acgacgtgat
     1321 ctgtggtcgt gccgtacttc aaacagtgaa tcccacccgc actctcggcg atgttgccgc
     1381 caatcgtgca gctcggctga ctcgacggat cgggcacgta atacaacccg tacggcagca
     1441 ccgcgcgcga cacatgcaga ttcacgacgc ccggttgcac aacagcaagc cggttctcgg
     1501 cgtcgatgcg cagtatcttg cgcatacgcg caaactcgat cacgacaccc gaattcaaag
     1561 cgagtgcgcc gcccgacaaa cccgttcccg cgccgcgcgg tgtgaccgga ccctgcgcgc
     1621 gcgcgagcgc gcgcatgacc tccgacgtcg cttcagtcga cgaaggaaac acgaccgcgc
     1681 gcgggcgatg cttgtgttgc ggcaagccgt cgcactcgta caccagcagc tcgtcggctt
     1741 tggaaagtac gttctcgcgg cctacgatcg cgaccagatt ttgggttagt tgatccacgc
     1801 cgaagttgat tgacagtgta caatctaccg cttatgaaaa ccacacccct actggtttct
     1861 cttgtagctc tgaccctgac ctttatgacg cttccagttc acgctgacaa acccgtgttt
     1921 gtagccgaca cgatcatcat caacgctgtt gtccacacca tggacaagac gcaaccggcc
     1981 gctgaagccg tcgcgatcta cgcgggccgc atcgccgctg tcggtgcgac aaaggacatc
     2041 aaaaaactcg ctggtccaac cacgcgcacg atcgacgcga agaagcgttt gctgctgccg
     2101 ggattcaacg acgcgcacac acatttcatg agcggcggct ttcaactctc gagcgtcgat
     2161 ctgcgtgacg ctgattcgcc gcaggagttt gccgcgcgca tcaaggcgtt tagccagaag
     2221 ttgccgaaag gacgttggat cacaggcggt gattgggatc acgagcgctg gtccgacgcg
     2281 aagctgccaa cgaaagaatt gatcgacagc atcactccgg acacgccggt gttcgtcagc
     2341 cgtctcgacg gtcacatggc gctcgcgaac agcctcgcgc tcaaactcgc gggtgttact
     2401 cgtcaaacac tcgatccgcc cggcggcgtg atcgtgcgcg acaaatctgg cgagccgacg
     2461 ggcgtgctca aagacgcggc gcagagcttc gtttggaaag tcatcccgcc tgccagcttt
     2521 gacgaaaaac tcgccgccgc acgcgccgcg tcaaactacg ccgcgaagct cggcgtcacc
     2581 agcattcagg acgtgtccgc aggcactgac gtcgccgtgt atcaag
//
LOCUS       DASWTX010000705         2105 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_381712, whole genome shotgun sequence.
ACCESSION   DASWTX010000705 DASWTX010000000
VERSION     DASWTX010000705.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2105)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2105)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2105
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381712"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1262
                     /locus_tag="VGD38_10720"
     CDS             <1..1262
                     /locus_tag="VGD38_10720"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0728533.1"
                     /translation="FDRQHRESRRYELLEVYHFPSHQWRGSHAFKTGLNFSHTSFDGT
                     DRSTPVSILRANGTRYQTIEFSGPGVLARKQNEFSAFVQDKWQLNKRFVLDLGLRYDR
                     DQIGKENNFAPRLGFVIAPTESDRTIIRGGVGLFYDKIPLNVSSFEQYQNLVVTTFAN
                     NGVTIVDGPRLFQNTSPDDLENPYSLAWNLQVDHQVSPRLLLRLGYEERSTRRDFVLE
                     PTVNPANPAAGLLLLQNSGRSRYRELQAVARFRFQENRNIYLSYVRSQARGNLNDFNT
                     YFGNQKHPVIRPDEYAKLPYDVPNRLLFWGDFGLPFDIVMTPVLDWHSGFPFSLLNEQ
                     QDFVGPRNEGGHFPQLVTLDLLIMKGLTIPFRGKKYKGRAGFTVFNITNHWNPRDVQN
                     NLASPQFGTFFNSPDRSVRLKFEFVKY"
     gene            1287..2039
                     /locus_tag="VGD38_10725"
     CDS             1287..2039
                     /locus_tag="VGD38_10725"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHB depolymerase family esterase"
                     /protein_id="HEY0728534.1"
                     /translation="MKPCLLLTFALLLISVSPVSSVAKDDITKELIKSNGKTRAYYLY
                     VPSTLAAGAQAPLIVTLHGSGRNGITLVEKWKDYAKKEGIILAGPDASNLQGWSAPQD
                     GPDFLRDLVEELKTKHPVNPRRVYLFGHSAGACFAIHMSLMESQYFAAAAIHAGALRS
                     QREFELIEIPKRKIPISIQVGDSDAFFPVKEVRATSNALQEAGFPVDMIEIKNHDHNY
                     YGSSAKFNQTAWEFLKKHELPEDPLYQRYNWN"
BASE COUNT          483 a          617 c          555 g          450 t
ORIGIN      
        1 ggttcgatcg ccagcatcgc gaaagccggc gttacgaact gctcgaggtt tatcacttcc
       61 cttcgcacca gtggcgcggc tcgcatgctt tcaaaaccgg gctgaacttc agtcacacgt
      121 cattcgacgg caccgacaga agcacgcccg tctcgatcct tcgcgccaat ggaacgcgat
      181 atcaaacaat cgagttcagc ggacccggcg ttctcgcacg caaacaaaac gagttctccg
      241 cgttcgtgca ggacaagtgg cagctcaaca aacgcttcgt gctcgatctc ggtcttcgtt
      301 acgaccgcga tcagatcggc aaggaaaaca acttcgcgcc gcggctcggt ttcgtgatcg
      361 cgcccaccga atccgatcgc acgatcattc gcggcggcgt cggactcttc tacgacaaga
      421 ttccgctgaa cgtcagctcg ttcgagcagt accagaatct cgtcgtgacc acgtttgcaa
      481 acaacggcgt cacgatcgtc gatggcccgc gcctctttca gaacacttcg cccgacgatc
      541 tcgagaaccc ttacagcctc gcgtggaact tacaagtgga ccatcaggta agcccgcgcc
      601 tgctgctgcg attgggttac gaagaacgca gcacgcgccg cgacttcgtg ctcgaaccga
      661 cagtcaatcc ggcaaatccc gctgcaggct tgcttttgtt gcagaactcg ggaagatctc
      721 gttatcgcga actgcaggcg gtcgcgcggt ttcgttttca ggaaaaccga aacatttact
      781 tgtcgtacgt gcgttcgcag gcgcgcggca atctgaacga cttcaacacc tacttcggca
      841 atcaaaagca cccggtgatt cgtccagatg aatacgccaa actgccgtac gacgtgccga
      901 accgcctgct cttctggggc gacttcggtt tgcccttcga catcgtcatg acaccagtgc
      961 tcgattggca cagcggcttt ccgttttcac tgttgaacga acagcaggat tttgtcggcc
     1021 cacgcaacga aggcgggcac ttcccgcagt tggtcacact cgacctgctg atcatgaagg
     1081 gactgacgat tccgtttcgc ggcaagaaat acaaaggacg cgcgggcttt accgttttca
     1141 acatcacgaa ccactggaac ccgcgcgacg tgcagaacaa tctcgcgagc ccgcaattcg
     1201 gcactttctt caatagcccg gaccgaagcg tgcgactgaa gttcgagttt gtgaaatact
     1261 aacctgccta cggaggactt cgagaaatga aaccttgcct tctactcacc ttcgcgctgt
     1321 tgctgatctc cgtgtcgcct gtgtcgtccg tggcaaagga cgacattacg aaggagctga
     1381 tcaagtcaaa cggcaaaaca cgcgcttact atctttacgt cccctcaact ctcgccgcgg
     1441 gcgcgcaggc tccgctgatc gtcacacttc acggctcggg acgaaacggc atcacgctcg
     1501 tggagaagtg gaaagactac gcgaaaaagg aaggcatcat tctcgccggt cccgacgcga
     1561 gtaatttaca aggctggtcg gcgccgcagg atggtcctga cttcctgcgc gatctcgtcg
     1621 aagagttgaa gacgaagcac ccggtcaatc cgcggcgcgt ctacctgttt ggtcactcgg
     1681 ccggggcttg ctttgcgatt cacatgtctc tgatggagtc gcagtatttc gcggccgcgg
     1741 cgattcacgc cggcgcactc agaagccaac gcgagtttga attgatcgag atcccgaagc
     1801 gaaagatacc gatctcgatt caagtgggcg acagcgatgc gttctttccg gtgaaagaag
     1861 tgcgcgcgac cagcaatgcc ttgcaggaag ccggatttcc cgtggacatg atcgagatca
     1921 agaatcacga tcacaattat tacggctcgt cggcgaagtt caatcaaaca gcttgggagt
     1981 ttttgaagaa acatgaactg ccggaagacc cgctgtatca gaggtacaat tggaactagc
     2041 taactcatga tggaagtaat caacctgctg atcgtcgttt tgctcgtgct ggcaaacggc
     2101 ttttt
//
LOCUS       DASWTX010000706         2196 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_75510, whole genome shotgun sequence.
ACCESSION   DASWTX010000706 DASWTX010000000
VERSION     DASWTX010000706.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2196
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75510"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(355..1338)
                     /locus_tag="VGD38_10730"
     CDS             complement(355..1338)
                     /locus_tag="VGD38_10730"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEY0728535.1"
                     /translation="MIQPLEMKETHPIKLHARGVSTTTEVWNTLSASFDGDVSRVAAL
                     VESNPPLLTCQYDYTSPLHLAVREGHVDLVRFLIERRALDPTYRTHPFLDSLLTVAGD
                     RGFDEITQLLRQALADPSLTREWGDTGAIDFEKDETQMRFQQLVNDRQHDDVEAMLQD
                     RPELALDETAFWGEGILAMPAKDGDHRMLEILMDHGARCPDVSKWGARYYFKNYLTAR
                     FLLERGMSPNHMNWRGFTLLHDMAHTGDLAKARLLIEHGADINRVDDEYRSTPLGYAA
                     RWGHLEMVKLLLDCGADADKSGAPWSTPLAWARKKNHAEVEHLLEARELPH"
     gene            complement(1338..>2196)
                     /locus_tag="VGD38_10735"
     CDS             complement(1338..>2196)
                     /locus_tag="VGD38_10735"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY0728536.1"
                     /translation="RWDAAIDTCGYLPRAVRAAAEALSGSVERYVFISSMSAYADVSV
                     KGVAETDPLRTLTSEQLDRAYAIDTAGQPSYGELYGGLKALCEQAAEEVMPGRVLIVR
                     PGLIVGPYDYTDRFTYWVVRVARGGEVLAPGCAERPVQFIDARDLADWTVSMSERGAA
                     GVYNANRAPNTLTMRDVLEECKSSSNSDAVFTWTSEAFLREEKVAAWSEMPLWLPEEE
                     APQLQGFMFVNCDKAIAAGLRIRPVSETIGDTLEWARRELHGEALKAGIDPERGQTLL
                     RKWHESRSH"
BASE COUNT          447 a          671 c          618 g          460 t
ORIGIN      
        1 ccaccctgag ccggcctcga ccatcgccgt acgagatacc ggtgaagctg agtttcaggt
       61 tcaagggagt ccccggctcg atcaagtatt tacccgcggg caaaccgtac gcctcataga
      121 ctccgttttg tcggtgaaca cttcgtacgt tttactctcg ccggtcagct tcactttgac
      181 acccatcagc ggtttttgtt ctcgagtctt taagtcaccc gcgatgcgtg tcttttccgc
      241 ggaagcagga agaccgcgaa gggcgtacaa gtgcacgcca taacacggtc aggagagaag
      301 aggagtattc ccaacgccgc ggttgtgaga agcagtttca tgtgagtgtt cctttcagtg
      361 tgggagttcg cgtgcttcca aaaggtgctc aacttccgcg tggttcttct tgcgtgccca
      421 cgcgagcggc gtggaccatg gcgcgcccga cttgtccgca tccgcgccgc agtccaacag
      481 cagcttcacc atttcaaggt ggccccaacg cgccgcgtag cccaatggag tcgaacgata
      541 ctcgtcgtcg acgcgattga tgtccgcacc gtgttcgatg agtaaacgcg ccttggcgag
      601 gtcgccggta tgggccatgt cgtgaagcag cgtaaagccg cgccagttca tgtgattcgg
      661 gctcatgcca cgttcgagga gaaaccttgc ggtgagatag tttttgaagt agtagcgcgc
      721 gccccacttg gagacgtcgg gacagcgcgc gccgtggtcc atgagtattt cgagcatgcg
      781 atggtcgccg tctttggcgg gcatagcgag tattccttcg ccccaaaacg cggtttcgtc
      841 gagcgcaagc tcgggacgat cttgcagcat tgcttcgacg tcgtcgtgct ggcgatcgtt
      901 tacgagttgc tgaaatctca tctgcgtctc gtctttttcg aagtcgatcg cgccggtgtc
      961 gccccattca cgcgtgagcg acggatcggc cagcgcttgt cgcagaagct gagtgatctc
     1021 gtcaaagccg cgatcgccgg ccacggtgag cagcgaatca aggaaaggat gtgttctgta
     1081 cgtgggatcg agcgcgcgcc gttcgatgag aaaccggacc aggtcgacgt gcccttcgcg
     1141 cacggcgaga tgcagcggcg aagtgtagtc gtactgacac gtcaacaacg gcgggtttga
     1201 ctccaccaaa gccgcgacgc gcgagacgtc gccgtcaaag ctcgcgctga gcgtgttcca
     1261 tacttcagtc gtggtcgaga ctccgcgggc gtgaagcttg atcggatgag tctctttcat
     1321 ttcgagaggt tggatcatta gtgagatctc gattcgtgcc atttgcgaag cagagtttgc
     1381 cctcgctcgg gatcaattcc ggctttcaac gcctcgccat gaagctcacg tcgggcccat
     1441 tcaagcgtgt cgccgatcgt ttcgctaaca ggtctgatgc ggaggccggc agcaatcgct
     1501 ttgtcgcagt tgacaaacat gaagccttgc agttgcggcg cctcttcttc gggtaaccag
     1561 agcggcatct cgctccacgc ggcgaccttt tcttcacgca gaaacgcttc ggaggtccag
     1621 gtaaaaaccg cgtcgctgtt actgctcgac ttacattcct ccagcacgtc ccgcatcgtc
     1681 agggtgttcg gcgcgcgatt ggcattataa acacccgccg cgccgcgctc actcatcgac
     1741 acggtccaat cagccaaatc acgagcgtcg ataaactgaa ccggacgttc agcgcacccc
     1801 ggcgccaaca cctcgccccc gcgcgcaaca cgcacgaccc aataagtaaa cctgtccgtg
     1861 tagtcgtatg gaccaacaat caaacccgga cgaacgatca gaacgcgccc gggcatgacc
     1921 tcttccgcgg cctgttcgca gagcgccttc aaacctccat acagctcgcc atacgacggc
     1981 tggcccgcgg tgtcgatcgc atacgcgcga tcgagctgtt cgcttgtcag agtgcgaagc
     2041 ggatctgtct cagcaacacc cttaacgctg acatccgcat acgccgacat gctcgaaata
     2101 aacacataac gctccaccga tccggacaac gcttccgccg cagcccgaac ggcgcgcggc
     2161 aggtatccac acgtatcaat cgcagcatcc cagcgg
//
LOCUS       DASWTX010000707         2209 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_360731, whole genome shotgun sequence.
ACCESSION   DASWTX010000707 DASWTX010000000
VERSION     DASWTX010000707.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2209)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2209)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2209
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_360731"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1820
                     /locus_tag="VGD38_10740"
     CDS             <1..1820
                     /locus_tag="VGD38_10740"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728537.1"
                     /translation="LDYEEKATDELLRVTELVPNLSELPPADMLFVQAITATVRRNFQ
                     GAIENFEEIARRVPDDEKASAHFDAGRAYERARDPARAISAFEEVTRRDERAAPAYVR
                     LGLLYGRRQEDAKANAAFDKAQALYDAQGSVEGTAEVFFQRGAFLNQGDKLPEAQEQL
                     RRGLDLSLTTDNKPQQIKILLQLGMVAYSAGDTLRAEQFSTRAIDLARSEQLDNLTTN
                     GLIDIGNALFLRGEYSEAEKRFEQALQIAKANKGRRAEARALLSLGSLLVQQGIWAKA
                     LSYLEPALAFYRQGNYRRETSQALLLLGNANQQQGNNDAALELYNEQLQLAQQVNDVA
                     QVAHAHAAIGLLLAHQERFTEALNHYDESYKLNKSLGLEPKTGYDLLNRGGLFWQLGH
                     YKEARDALAQAFDVANRPGGIDKQLLAWVHLFRAQMALSEFRYSEAVAESRKASALGG
                     VQQKDFSVLVSSTYGLAELHSGTSDAGVVKCIKAFDISNRAGAPRLIANAQLALAEAL
                     LATGDVANALTSALRAQQIFARLGSRHSEWRAWLIAAQASRRQQDETKVDEYATRASG
                     LLTAFEKALGASEYNSYLSRPDVQRYLKQLDELLPGANN"
     gene            1847..>2209
                     /locus_tag="VGD38_10745"
     CDS             1847..>2209
                     /locus_tag="VGD38_10745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728538.1"
                     /translation="MSGQMETGADRVSYDTGQQTPVIIKNGGNRPVTIDARYNPFNEL
                     VPGLTWVVSQSASRRRITKLRIDEGTQSDIYNRPSPELASIRIEYENAEILVMEAGNP
                     DTNEIFLVIVSVGVPLSVE"
BASE COUNT          526 a          628 c          627 g          428 t
ORIGIN      
        1 agttggacta tgaggagaaa gcaacggatg agttgttgcg tgtcaccgaa ctggttccga
       61 atctctccga actgcctccg gctgacatgc tcttcgtgca agcgatcacg gcgacggttc
      121 gccgcaactt tcaaggcgcg atcgagaact tcgaggagat cgcgcggcga gtgcccgatg
      181 atgaaaaagc atcagctcat ttcgatgccg gtcgcgccta cgagcgtgca agagatccgg
      241 cgcgcgcgat aagcgcgttc gaagaggtca cccgtcgaga cgaacgagct gctcccgcgt
      301 acgtgcgttt gggtctcctt tacgggagac ggcaggaaga tgcgaaagcc aacgcagctt
      361 ttgataaagc gcaggcgctg tacgacgccc agggcagtgt cgaaggcacc gccgaggttt
      421 tctttcaacg cggcgctttc ctgaatcagg gtgacaagct gcccgaagca caggagcagt
      481 tgcgtcgggg gctggacctg agtctgacga ccgacaacaa accgcagcag atcaagatcc
      541 tgcttcagct cggcatggtt gcttacagcg ccggcgacac gcttcgcgcc gagcagtttt
      601 cgacgcgcgc gatcgatctg gcgcgttccg aacaactcga caatctcacc accaatggcc
      661 tcatcgacat cggcaacgca ctcttcctgc gcggcgaata cagcgaggct gaaaaacggt
      721 tcgagcaagc gctacagatc gcgaaagcaa acaagggccg gcgcgctgaa gcaagggcgc
      781 tgctgtcact cggcagcctg ttggtccaac agggtatttg ggccaaagcg ctgagttatc
      841 tcgaacccgc gctcgcgttt tatcgacagg gaaactaccg ccgcgagact tcacaggccc
      901 tgctgttgct cggtaacgca aatcagcagc agggaaacaa cgacgccgcg ctcgagttgt
      961 ataacgagca gcttcagctt gcgcaacagg taaacgacgt ggcccaggtg gcccacgctc
     1021 atgcagccat cggcctgctc ctcgcgcatc aggaacgctt cacggaagcc ctcaaccatt
     1081 acgatgagag ttacaagctc aacaagtcgc tgggtctcga accaaaaacc ggttacgacc
     1141 ttctcaatcg tggcggcttg ttttggcaac tcggtcacta caaagaagca cgtgacgcac
     1201 tcgcgcaggc tttcgacgtt gccaaccgtc ccggcgggat tgataagcaa ctgctcgcct
     1261 gggttcacct gttcagagcc caaatggcgc tgagcgagtt tcgttatagc gaggctgtgg
     1321 ctgaaagccg gaaggcttcg gcgcttggtg gcgtgcagca gaaagacttc tcggtcctgg
     1381 tttcctccac ttacggactc gccgaacttc actccggcac atcggatgca ggcgttgtca
     1441 aatgtatcaa agcatttgac atctcaaacc gtgccggagc tccgagactt atcgccaacg
     1501 cacagcttgc gcttgccgaa gcactgctgg cgactggcga cgtcgcaaac gctctgacgt
     1561 ctgcgttgcg agctcagcaa atttttgctc gtttgggcag tcgacattcc gaatggcgtg
     1621 cgtggctcat cgccgcgcaa gcaagccggc gacagcaaga cgaaacaaaa gttgacgagt
     1681 acgcgacgcg cgcgtcaggc ctgctgacgg ctttcgaaaa ggccctggga gccagcgaat
     1741 acaatagcta cctctcgagg ccggatgtgc agcgttatct aaagcaatta gacgaactcc
     1801 tgccgggagc aaacaactaa cccttcatct cgaaaggagc aaagcaatga gcggccaaat
     1861 ggaaacgggg gctgaccgag tgtcctacga taccgggcaa caaacaccag tgattatcaa
     1921 gaacggtggc aataggcctg tcactatcga cgctcggtac aaccctttca atgagttggt
     1981 tccgggactt acctgggtgg tgtcgcaatc cgcttccagg agaaggatca caaaattgcg
     2041 gatcgatgaa ggtactcagt cagacatcta taaccggccg tcgcctgaac tggcctccat
     2101 cagaattgaa tatgagaacg ctgagatcct cgtaatggaa gccggcaatc ccgacacaaa
     2161 cgaaatcttc ctggtcattg tgtcagtggg agttcctctt tctgtggaa
//
LOCUS       DASWTX010000708         3320 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_338685, whole genome shotgun sequence.
ACCESSION   DASWTX010000708 DASWTX010000000
VERSION     DASWTX010000708.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3320
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338685"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            307..1278
                     /gene="corA"
                     /locus_tag="VGD38_10750"
     CDS             307..1278
                     /gene="corA"
                     /locus_tag="VGD38_10750"
                     /inference="COORDINATES: protein motif:HMM:NF013694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015087 - cobalt ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006824 - cobalt ion transport [Evidence
                     IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HEY0728539.1"
                     /translation="MITTVCLNSNSQEFTENCIAADISDLREVSGNVIWADVTDPTSE
                     DFRELAEDFGFHHLSIEDCQNQHQRPKIEEYAGYYFIVLYEAELVGPTDRLELRELNI
                     FLGKNYLVTVHSRPIRAIETARRLWPEWLDRADEGSGLLAYLLIDAIVDDYLPLLDLV
                     SERMDTLEDSIFGEFQAEAIEEIFGIKKKLLYLRRAVAPLRDVFNTMLRREQQIFSRG
                     TYVYFQDVFDHLIRVADTIDTLRDMLSSTMDAYLSVSGNRMNMIMKRLTSVSTILMSV
                     TLIAGIYGMNFDLMPELKWRFGYIFALVSMVAVGFALYRYLKKVKWI"
     gene            1275..1601
                     /locus_tag="VGD38_10755"
     CDS             1275..1601
                     /locus_tag="VGD38_10755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728540.1"
                     /translation="MSKKVSLRRHASGNVRKKGNTHQLAAQLAPLEEQNKPAAEQQMK
                     KAQHQRDPGAIVVDNADFNFPKGVVEGGEEKQFLGMEPVVLVVLIIVLGFIAFITWQI
                     TLMPAR"
     gene            complement(1613..1954)
                     /locus_tag="VGD38_10760"
     CDS             complement(1613..1954)
                     /locus_tag="VGD38_10760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728541.1"
                     /translation="MEEKAAFKIGDRVDQMCVNCKEERGHIVTSVSKAGRITRVSCPM
                     CKSSVTYRAGASRASAKSGAPYDRGRTYRKGQILMHPTFGEGEVTEIIEPQKMDVLFA
                     DRIRRMIHAHS"
     gene            complement(2070..2783)
                     /locus_tag="VGD38_10765"
     CDS             complement(2070..2783)
                     /locus_tag="VGD38_10765"
                     /inference="COORDINATES: protein motif:HMM:NF024934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEY0728542.1"
                     /translation="MPVFEGPAQPRDNRLLAALPSEDYERLVPHLGNVSFSLGEVVYE
                     FGGRLDYVYFPTTAIVSLLYTMENGSSAEMGLTGNDGVVGIALFMGGGTMPNHAVVQS
                     AGGAVRLKAKVLQDEFAKGGKFQYLLLRYTQALITQISQTAVCNRLHSVEQQLCRWLL
                     LSHDRLNTDELIMTQELIAGMLGVRREGVTVAAGRLQDAGAISYVRGHIQILDRQRME
                     ETVCECYRVVKNEFDRLLG"
     gene            2931..>3320
                     /locus_tag="VGD38_10770"
     CDS             2931..>3320
                     /locus_tag="VGD38_10770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006779552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TCP-1/cpn60 chaperonin family protein"
                     /protein_id="HEY0728543.1"
                     /translation="MAKQITLGGESRAAILRGVNKLADTVKITLGPKGRNVVLDKKFG
                     SPVITKDGVTVAKEIDLQDATENMGAQMVRVVASRTNDVAGDGTTTATVLAQAIFREG
                     VKAVAAGANPMALKRGIDKAVERAIQQI"
BASE COUNT          796 a          931 c          863 g          730 t
ORIGIN      
        1 gctcttcttt tcggtcgggc cgtttcagac tcggcgttgc ttgtggtgat gactcattct
       61 gctgaggcac cctaccggcc tgccccaaag cagccggagc caaagcgaag cagaacgcaa
      121 gtatccatag ggttgcgata aaactgcctg taaatctggt aaatggcatt cctgtaccgt
      181 aactctttga aggcatcata gataaaaggc gggaagattg gaacctagta tactctggtt
      241 tatcccgtag tcattacggg ccgaagtcaa tattgacacc ccggtaagga gtgagaagat
      301 tcctcagtga tcaccaccgt ctgcctgaac agcaactccc aggaattcac cgaaaactgc
      361 atcgccgccg acatcagcga tcttcgcgag gtcagcggca acgttatatg ggctgacgtt
      421 accgatccga ccagcgagga tttccgtgag ctggccgagg actttggctt ccaccatctc
      481 tcgattgaag actgtcagaa ccagcatcaa cgtccaaaaa tcgaggaata cgccgggtat
      541 tacttcatcg tgctctacga agccgagctc gtgggtccaa ccgacaggct ggagctgaga
      601 gagctaaaca tatttctcgg caagaattat ttggtcaccg ttcacagccg tccgattcgc
      661 gccatcgaaa cggcgcgccg cctctggcct gagtggctcg atcgtgccga cgaaggatcg
      721 ggactgctcg cgtatttgtt aatcgacgcg atcgtagacg attaccttcc cttgctcgac
      781 ctcgtcagcg aacgcatgga cactctcgag gattcgatct ttggcgaatt ccaggccgag
      841 gcaatcgagg agatcttcgg gattaaaaag aagctgcttt atctacggcg tgcggtagcg
      901 ccgctgcgag acgttttcaa tacgatgttg agacgcgagc agcagatttt ttcgcgcggg
      961 acgtatgtct attttcagga tgtgttcgac catctcatcc gcgtagccga cacgatagac
     1021 actctgcgcg acatgctcag ttcgaccatg gacgcttatc tttccgtttc aggcaatcgc
     1081 atgaacatga tcatgaaacg gctcacctca gtgtccacga tcctgatgtc cgtgacactc
     1141 atcgccggca tttacgggat gaacttcgat ctgatgccgg aactgaaatg gcgtttcggc
     1201 tacatctttg cactggtttc aatggtggcc gtagggttcg cgctttatcg atacttgaag
     1261 aaggtgaaat ggatatgagc aagaaggttt cattgcgccg gcacgcgagt gggaacgtcc
     1321 gcaagaaagg caatacacat cagcttgcgg cgcaacttgc tccgttggag gaacagaaca
     1381 agcccgccgc tgaacagcag atgaagaaag cccagcacca acgggatcct ggcgcgatcg
     1441 ttgtggacaa cgcggatttt aattttccga agggcgttgt cgaaggcgga gaagaaaagc
     1501 agttcctggg catggagccc gtggtcctgg tcgtcctgat tatcgtcctc ggtttcatcg
     1561 cgttcataac ctggcagatt acacttatgc cggcccgatg acagagatca cgttacgaat
     1621 gagcgtggat cattcgccgg atgcgatccg caaacaaaac gtccatcttc tgcggttcaa
     1681 taatctcggt tacctcacct tcgccgaacg tgggatgcat caatatctga cctttacgat
     1741 acgtacgccc gcgatcgtat ggcgcgccgg acttggcgga agcacgtgac gcccctgcgc
     1801 ggtacgtgac acttgatttg cacatcggac aactcacacg cgtgatcctg ccggccttgc
     1861 tcactgaagt cacgatgtga ccgcgctctt ccttgcagtt gacacacatc tggtcgacac
     1921 gatctccgat cttaaaagct gccttctctt ccataatttc tcctggttaa tttttcttct
     1981 gacaccaact cacataggga ttttcccaat gttaacacgc gccgtctgtg cgctagctcg
     2041 catatagcgc cgaacccgtt tgaagggacc tacccgagta accggtcgaa ctcgttcttc
     2101 acgacccggt aacactcgca gacagtttct tccattctct gacgatcgag gatctgaatg
     2161 tgaccgcgaa cataactgat tgccccggca tcctgcagcc ggcccgcggc cacggtcacg
     2221 ccttcgcggc gcacacccaa cattccggca attagctcct gtgtcatgat caactcatca
     2281 gtattcagcc ggtcgtggct caacaaaagc caacggcaaa gctgctgttc aactgagtga
     2341 agacgattac aaacggcagt ctgtgagatc tgcgtgatca acgcttgcgt gtagcgcaac
     2401 aacaggtatt gaaacttacc gcccttcgcg aactcatcct gaagcacctt tgctttcagc
     2461 ctcacggctc cgcccgcgct ctgaacaacg gcatgattcg gcatcgtgcc gccgcccatg
     2521 aagagagcga tccctaccac gccgtcgttg cccgtcaaac ccatctcggc gctcgagccg
     2581 ttttccatcg tgtaaagcag cgagactatt gccgtcgtcg gaaagtagac gtaatccagc
     2641 cgtccgccaa attcgtagac cacctcacca agtgaaaagg acacattccc gaggtgcggc
     2701 acgagacgtt catagtcttc acttggaagt gcggctagca ggcggttatc gcgcggttgg
     2761 gcaggtcctt caaagacagg catgaacaat ctcgatgcgc taaccctcaa agcgagtgcg
     2821 cgcgctgact acattgccga aagcatagca tgtatgtggc ctaccgcaca gacgccccgc
     2881 ttagcatagt ccagtctcaa aagggaaact aaacactttg agcgaggata atggcaaagc
     2941 aaataacgct tggcggtgaa tcgcgtgcgg caattctgcg cggtgtgaat aaacttgccg
     3001 acacagtaaa aatcacgctt ggtccaaagg gacgcaacgt cgttctcgac aagaagtttg
     3061 gcagccccgt tatcaccaaa gacggcgtca cggtcgcgaa agagatcgat ctccaggacg
     3121 caaccgagaa catgggcgcg cagatggtca gggtggtagc ttccagaacc aacgacgtcg
     3181 ccggcgacgg cactaccacc gcaacggtac tggcgcaggc gatctttcgc gaaggtgtaa
     3241 aagccgttgc cgccggcgcc aacccgatgg ctttgaagcg cggcatcgat aaagcagtcg
     3301 agcgtgcaat tcaacagatt
//
LOCUS       DASWTX010000709         3115 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_181895, whole genome shotgun sequence.
ACCESSION   DASWTX010000709 DASWTX010000000
VERSION     DASWTX010000709.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3115
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181895"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..659)
                     /gene="hisF"
                     /locus_tag="VGD38_10775"
     CDS             complement(<1..659)
                     /gene="hisF"
                     /locus_tag="VGD38_10775"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR00735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEY0728544.1"
                     /translation="MLAKRIIPCLDVDNGRVVKGIRFGSLVDAGDPVEQGKRYDAEGA
                     DELTFLDITASSDKRDIVAELVRRVADEVFIPFTVGGGLRTVEDIRAILRAGADKITL
                     NTAALETPELISACAETFGSQCVVVAIDARRRNANDPAEGWEVYTHGGRRNVGIDALE
                     WASRAQQLGAGEILLTSMDCDGTRNGYDIELTRAVSDAVRIPVIASGGAGTLEHFYEA
                     LT"
     gene            complement(653..1255)
                     /gene="hisH"
                     /locus_tag="VGD38_10780"
     CDS             complement(653..1255)
                     /gene="hisH"
                     /locus_tag="VGD38_10780"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: protein motif:HMM:NF012345.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEY0728545.1"
                     /translation="MSVAIIDYGVGNLRSVEKAFAATGCEAVVSGDERVLRGADRLVL
                     PGVGAFGACAKALRERGFDGLVREKVEEGTPLLGVCVGMQLLFEESDEFGATPGLGLL
                     PGRVRRFGDELVVPHVGWNRIDQVCENPMFEGVANGSFFYFVHSYYCEPEDKSVVAGE
                     TEYGVRYASVVAKANICGVQFHPEKSQDAGLRLLRNFARC"
     gene            complement(1343..1951)
                     /gene="hisB"
                     /locus_tag="VGD38_10785"
     CDS             complement(1343..1951)
                     /gene="hisB"
                     /locus_tag="VGD38_10785"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF002111.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HEY0728546.1"
                     /translation="MKSQVKNNGRLATVHRKTKETDVRVRLNLDGTGRSSISIGLPFL
                     EHMLELFAKHGLFDLDVKCDGDLEIDDHHSVEDIAITLGQALTQALADKVGINRYGEA
                     VVPMDEALCRSVIDLSGRFYLVYEVPTKRQKIGNFSVELAEHFWRSFAETAKFNLHID
                     CLRGRNTHHILEGTFKASARALRQAVEINARVTGVPSTKGSL"
     gene            complement(1935..3005)
                     /gene="hisC"
                     /locus_tag="VGD38_10790"
     CDS             complement(1935..3005)
                     /gene="hisC"
                     /locus_tag="VGD38_10790"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEY0728547.1"
                     /translation="MTTPLDIIKPAVRALRAYTLSPHRASVKINQNENPWDAPAEIKE
                     EVLRRFAAREWSRYPDFVPVSLQDSLAQFAGWKADGIVAGNGSNELIQALLMVSIGPG
                     KRVLISEPTFALYRQVATVLGGEVETVLLTPELTYDVAALLKKIDETQPDVTIICSPN
                     NPTGCVLAEKDLVALLNASRGLIAIDEAYHEFSRQSVVPLLHEHENLIVLRTFSKAMA
                     FAALRVGYLLASPELVTEIRKAVLPYNLNAFSQIAAEVAIEKYPTLLGPTVEAIVAER
                     DRLYRELSEIEGLAPVVSQGNFMVVRARRDVRQIFEELLKRDILVRDVSGYPMLREYF
                     RVSVGTPEENDRLLRALNEIAG"
BASE COUNT          706 a         1106 c          713 g          590 t
ORIGIN      
        1 gtcaacgctt cgtaaaaatg ctcgagcgtc cccgcgccgc cggacgcaat gaccggaatc
       61 cgcaccgcgt cggaaaccgc gcgcgtcagt tcgatatcgt aaccgttgcg cgtgccgtcg
      121 cagtccatgc tcgtcaacaa aatctcgccc gcgccgagtt gctgtgcgcg tgaggcccac
      181 tcgagtgcgt cgatgccaac gttgcgccgg ccgccgtgcg tgtaaacttc ccaaccctca
      241 gcaggatcgt tcgcgttgcg ccggcgcgcg tcgatcgcga ccacgacgca ctggctgcca
      301 aacgtttccg cgcacgcgct gatcagttcc ggtgtttcga gcgcggccgt attgagcgtg
      361 atcttgtcgg cgcccgcacg caagatcgcg cgaatgtctt cgaccgttcg cagcccaccg
      421 ccgaccgtga acggaatgaa gacttcatcc gccacgcgcc gcacgagctc cgcgacgatg
      481 tcgcgcttgt ctgacgacgc ggtgatgtcg agaaacgtca gctcgtccgc gccctcagca
      541 tcgtaacgct ttccctgctc gaccggatcg ccggcgtcga cgagcgatcc aaaccggatg
      601 cctttcacca cgcgcccgtt atcgacgtcg agacagggaa tgatccgttt cgctagcatc
      661 gtgcgaaatt tctcagcagc cgcaggcccg cgtcctgact cttttccggg tggaactgca
      721 cgccgcaaat gtttgccttc gctacgaccg aagcatacct gactccatac tccgtctcac
      781 ccgcgaccac agatttgtct tcgggctcgc agtagtacga atgcacaaaa tagaagaaag
      841 aaccgttagc aaccccttca aacatcggat tttcacagac ctgatcgatt cggttccaac
      901 ccacatgcgg cacaactaac tcgtcaccaa accgtcgcac tctgcccggc aacaacccca
      961 gccccggcgt cgcgccaaac tcatcagact cttcaaacaa caactgcatc ccaacgcaaa
     1021 cacccaacag cggcgtccct tcctcaacct tctcccttac caacccatca aacccgcgct
     1081 ccctcaacgc cttcgcacac gcgccaaacg cccccacccc aggcaacacc aatctatcgg
     1141 ctccccgcag aacccgctca tcaccactca ccacggcctc acaaccggta gcggcaaacg
     1201 ccttctccac cgacctcaaa ttccccacac cgtaatcaat aatcgctacg ctcacgctac
     1261 ttgtaccgat cccctctcct cagtccctcg caagcgggac aatcccctcc cctttaggcc
     1321 acaccagacc gatcacctgc gctcacagcg atcccttcgt actcggcacc ccagtaacac
     1381 gagcattgat ctccaccgcc tgccgtagcg cgcgggcgga ggccttgaac gtcccttcaa
     1441 gaatgtgatg cgtgttacgc ccgcgcaaac aatcgatgtg cagattgaac ttcgccgtct
     1501 ccgcaaacga gcgccagaaa tgctccgcga gctccacgga aaaattcccg atcttctgcc
     1561 gcttcgtcgg cacctcgtac acgagataaa accgccccga aagatcgatc accgaacgac
     1621 acaacgcctc atccatcggc acaaccgctt caccataacg attaatcccc accttgtccg
     1681 caagcgcctg cgtcaacgct tggcccaacg tgatcgcgat gtcttcaacc gaatgatgat
     1741 cgtcgatttc aagatctcca tcacacttca catccaagtc aaacagccca tgcttcgcaa
     1801 acagctccag catgtgctcc agaaacggca agccaataga gatcgaggac cggcccgtgc
     1861 catcgagatt gagcctgacg cgcacgtccg tctctttcgt cttgcgatga acggtcgcca
     1921 aacgaccgtt attcttaacc tgcgatttca ttgagtgccc tcaacaaccg gtcgttctct
     1981 tcaggcgtac ccacactcac acgaaaatac tcccgcaaca tcggatatcc gcttacatcc
     2041 ctcacgagta tgtctcgctt caacaactcc tcaaaaatct gcctgacatc cctcctcgct
     2101 cggaccacca taaaattccc ctgcgaaacc accggcgcca acccctcaat ttccgacaac
     2161 tcgcggtaca aacggtccct ttcagcgacg atagcctcga ccgttggtcc aagcagggtg
     2221 ggatacttct cgatcgccac ttccgccgcg atctgagaaa aagcattcag attgtacggc
     2281 aacacagcct tgcgaatttc cgtcaccaac tccggcgacg caagcaagta cccgacgcgc
     2341 agcgccgcaa acgccatcgc tttcgaaaac gtgcgcaaca cgatcaggtt ctcgtgctcg
     2401 tgcagcaacg gaaccacaga ttgtcgcgaa aattcatgat acgcctcgtc gatagcgatt
     2461 agaccgcgcg aggcgttgag gagtgcgacg agatcttttt cagcgaggac gcagcccgtc
     2521 gggttgtttg gcgaacagat gatcgtgacg tccggttgcg tctcatcaat ctttttgagc
     2581 aacgccgcaa cgtcgtaagt caactccggc gtcaacaaaa ccgtttcgac ttcaccaccc
     2641 agcaccgtgg ccacttgcct gtacaacgca aacgtcggct cagaaatcag cacgcgtttg
     2701 ccggggccga tcgaaaccat caacagcgcc tgaatcaact cgttcgagcc attacccgca
     2761 acgatcccgt ccgctttcca acccgcaaac tgcgccaggc tgtcctgcaa actcaccggc
     2821 acaaaatccg gataccgcga ccactcgcgt gccgcaaacc gccgcagcac ttcttccttg
     2881 atctccgccg gcgcgtccca cggattctcg ttctgattga tcttcaccga cgcgcgatgc
     2941 ggcgagagcg tgtacgcgcg cagcgcacgc accgcaggct tgatgatgtc gagtggcgtc
     3001 gtcatttttc ttttcgaaca acagccgagc gcgcgtgagc cgcgaggcct tcgcattggg
     3061 ccaaggtcga gacgctctcc gcaaccgagt cgaacgcgcc ggcagaatac cgcaa
//
LOCUS       DASWTX010000710         3211 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_225354, whole genome shotgun sequence.
ACCESSION   DASWTX010000710 DASWTX010000000
VERSION     DASWTX010000710.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3211)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3211)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3211
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225354"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..577)
                     /locus_tag="VGD38_10795"
     CDS             complement(<1..577)
                     /locus_tag="VGD38_10795"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEY0728548.1"
                     /translation="MRTIVSLLLLLLMLALAAYDAVAQQLRDVARTVDSSVVVIKTVE
                     KNLLTMPQTMFVSSPGSGSGVLISSDGQVLTAAHVVQAADKIEVEFSDGQVVPAKVIS
                     SVPSADVAMLKLDWVPYNAKPARLGDSDKMQVGDDVFIIGAPYGMGHSLSAGHISARR
                     APKTSVAGTIALEMLQTDAAINKGNSGGPMFN"
     gene            complement(589..1245)
                     /locus_tag="VGD38_10800"
     CDS             complement(589..1245)
                     /locus_tag="VGD38_10800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728549.1"
                     /translation="MKSLLLGVGLGALVSLSALTATAQTNATALAKYQWKRRTEVQRN
                     GETKNVQVALVRYDVNGRQQTTPISGTAEPDLPKFGLRKAIAEKKFKAFRETVQQLGD
                     LARAYSEFTPEQMQKFMASASMTPAVVGGQQLMRVDGGNVLHSGDKMTIWTDPASRKQ
                     RRVEIQTVLDDKPVRIVSEFKDLSASGPTYMAVSRINYDDGAVVIITENFDHLTASRQ
                     "
     gene            complement(1284..1790)
                     /locus_tag="VGD38_10805"
     CDS             complement(1284..1790)
                     /locus_tag="VGD38_10805"
                     /inference="COORDINATES: protein motif:HMM:NF024978.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4136 domain-containing protein"
                     /protein_id="HEY0728550.1"
                     /translation="MMRVVRNLLGGSVLMLLAATALMAQSVQTDYDRTFNLSKLRSYS
                     FVNQQRGPRDPLAASPINDRRIHDTLNAQLQANGFSESGQPDFLISYFVSTKTGLDIQ
                     DNRYGWFQRRGTIDVDQVTEGTLVVVFVDNATKQEVWRGYATGTLNPKKLNEDVTKAV
                     TKLVQKFK"
     gene            complement(1820..>3211)
                     /locus_tag="VGD38_10810"
     CDS             complement(1820..>3211)
                     /locus_tag="VGD38_10810"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEY0728551.1"
                     /translation="VELGAITKGVRLIEGGVARAEVPLSELGQGMSPFPFLLIVEQGK
                     HETLLYEFIKSHGKDVRWQTTLTDFSQDDAGVAGTIVNASGEKQLVQAKYLVACDGAK
                     SRVRKELGLTFKGSTLERLFYVADVQIKWDFPHDMLAACLAKDQSTAFFPMPGADHYR
                     IVGAFPEDTELKEGEVLYEEIERQILADTQLELDIYKVNWFSTYKVHSRRVNKFSEGR
                     CFVAGDAAHIHSPAGAQGMNTGIQDGYNLAWKLALVLRGDANARILDTYNEERVEIAK
                     RLLETTDRMFDLLVNPAWMLSFARRYVFPYVANFLVGLESVNQFIFPLISQIGITYRE
                     RTLSFDTGEDFEIKAGDRMPHFLVDGKGVFDWLHAPSFHLLTFTNEIEGPEHMRERIE
                     HEFRRLVDYHAFPLNERVTEIFGTDKPFSVLLRPDNYIGFVSSRAPLAELRAYFDAAI
                     GRPQARSQSEVAG"
BASE COUNT          677 a          966 c          852 g          716 t
ORIGIN      
        1 gattgaacat tggaccacca gaattgcctt tattgatcgc ggcgtccgtt tgcaacatct
       61 cgagcgcaat cgtccccgcc accgaggtct tcggcgcacg gcgcgcgctg atgtgtcccg
      121 ccgaaagact gtgacccatc ccgtacggcg caccgatgat gaacacgtcg tcgccgacct
      181 gcatcttgtc agagtcgccc aagcgcgcgg gcttcgcgtt gtacggaacc caatccagct
      241 tgagcatcgc aacgtccgca ctcggcaccg acgaaattac tttcgccggt accacttgcc
      301 cgtcgctgaa ctccacctcg atcttgtcag cggcctggac cacatgcgcc gccgtcaaca
      361 cttggccgtc gctcgagatc aaaactcccg atcccgagcc cggcgaactg acaaacatcg
      421 tctgcggcat cgtcaacaaa ttcttctcga ccgtcttgat cacgacgacc gatgaatcaa
      481 ccgttcgcgc cacgtcgcgc agttgctgtg caacagcgtc gtacgccgcg agtgccaaca
      541 tcaatagcaa gagtagtagt gaaacaatgg ttctcatgat gattgccttt actggcgcga
      601 cgcggttagg tgatcgaagt tctcggtaat gatcaccact gcgccgtcgt catagttaat
      661 acgagagacg gccatgtacg ttggaccact cgcagaaaga tctttgaact cggaaacgat
      721 ccgaactggt ttgtcgtcca acaccgtctg aatctcaacg cgccgttgct tgcgcgacgc
      781 cggatcggtc cagatagtca ttttgtcgcc gctgtgcagc acgttgccgc cgtccacgcg
      841 catgagctgc tgtccaccaa ccactgcagg cgtcatggat gcggacgcca tgaacttctg
      901 catctgctcc ggagtgaact cgctgtaagc gcgagccaaa tcacctaact gctgcaccgt
      961 ttccctgaac gccttgaact tcttctcggc gatcgctttg cgcagaccaa acttcggcaa
     1021 gtctggttcg gctgtaccgg agatcggcgt cgtttgctgg cggccgttaa cgtcgtaacg
     1081 gaccagcgcc acttgcacgt tcttcgtttc accgttgcgt tgcacttccg tgcggcgctt
     1141 ccattgatac ttcgctagcg ccgtcgcatt tgtttgggct gtcgcggtga gggcgcttag
     1201 cgatacgagc gcccccaacc caacacccag cagtaagctt ttcatttcat tttcacctcc
     1261 gcttagtttt tgcccgcctg gttctatttg aacttttgaa cgagcttcgt caccgctttc
     1321 gtgacgtctt cattcagctt cttggggttg agcgttccgg tggcataacc gcgccacact
     1381 tcctgcttcg tcgcgttgtc gacaaacacg acgacgagcg tgccttcagt cacctgatcg
     1441 acgtcgatcg ttccgcggcg ctgaaaccag ccgtagcgat tgtcctgaat gtcgagaccg
     1501 gtcttggtcg aaacgaaata gctgatcaga aaatccggct ggccgctttc gctgaaaccg
     1561 ttggcctgga gctgtgcatt caacgtgtcg tgaatgcggc gatcgttgat cgggctggca
     1621 gcgagcgggt cgcgtggtcc acgctgctgg ttgacgaagc tgtaactgcg tagcttcgag
     1681 aggttaaagg tgcggtcgta atcagtttgc actgactggg ccatcagggc tgtggcggcg
     1741 agcaacatga gcacactacc gcctaacaag ttgcgaacaa ctctcatcat ggttctcctt
     1801 agatttaggg gtttaaaagt tagccggcta cctccgactg actccgcgct tgcgggcgtc
     1861 cgatagcagc atcgaaatag gctctcaact ctgcgagcgg agcgcgggac gaaacaaagc
     1921 cgatgtagtt atccggtctc agcaacacgc tgaaaggctt gtccgtaccg aagatctccg
     1981 tgacgcgttc gttaagagga aaggcgtggt agtcgacgag gcgccgaaac tcgtgctcga
     2041 ttctttcacg catatgttcc ggaccttcga tctcgtttgt aaaagtaagc agatgaaaac
     2101 tcggcgcatg cagccagtcg aaaacgccct ttccgtcaac taaaaagtgc ggcatacgat
     2161 cgccggcttt gatctcaaag tcttcgccgg tatcaaaact caacgtgcgt tcgcgatacg
     2221 tgatgccgat ctgcgaaatg agcggaaaga taaactggtt gactgactcc aaaccaacca
     2281 gaaaattagc gacgtacgga aacacgtagc ggcgcgcgaa cgagagcatc cacgcaggat
     2341 tcacgagcag atcgaacatg cgatccgtcg tctccagcag acgcttcgca atctcgacac
     2401 gttcctcgtt gtaagtgtcg agaatgcgcg cgttcgcatc accacgcagg acgagcgcga
     2461 gtttccacgc caggttgtaa ccgtcctgaa tgcccgtgtt cattccctgc gcccccgccg
     2521 gggaatgaat atgcgccgcg tcgccggcca caaagcagcg gccttcgctg aacttgttaa
     2581 cgcgccgcga gtgaaccttg taagtcgaaa accaatttac tttgtagatg tcgagctcga
     2641 gctgcgtgtc cgcaagaatc tgccgctcga tctcttcgta caacacctcg ccttctttga
     2701 gttccgtgtc ttccgggaag gcgccgacga tgcggtaatg atccgcgccc ggcatcggaa
     2761 agaacgccgt cgactggtcc ttcgccagac acgccgcgag catgtcgtgc ggaaagtccc
     2821 atttgatctg cacgtcggcg acatagaaca ggcgctcgag cgtgctgcct ttaaacgtca
     2881 gacccaactc tttgcgaacg cgactcttcg cgccatcgca agcgacgaga tactttgcct
     2941 gtaccaactg cttctcgccg cttgcgttaa cgatagtgcc cgccaccccc gcgtcgtctt
     3001 gcgaaaagtc ggtaagagtc gtttgccacc ggacgtcttt gccgtggctc ttgataaatt
     3061 cgtaaagcag cgtctcgtgt ttgccctgtt cgacaatcag caggaacgga aacgggctca
     3121 tgccctggcc caactccgac aacggaactt ccgcgcgcgc aacgccgcct tcgatcaggc
     3181 ggacgccttt agtgatcgcg ccgagctcga c
//
LOCUS       DASWTX010000711         2182 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_97840, whole genome shotgun sequence.
ACCESSION   DASWTX010000711 DASWTX010000000
VERSION     DASWTX010000711.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2182
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97840"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2182)
                     /locus_tag="VGD38_10815"
     CDS             complement(<1..>2182)
                     /locus_tag="VGD38_10815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728552.1"
                     /translation="GGRSIAVAGSVSRPNEYYFGATGGGVWKTTDGGTTWRAVSDRDF
                     KSSSVGSIGLCEANPDVLYVGMGETQLRGNIMQGDGVYKTTNGGTNWVHSGLHDSQAI
                     ARIRVHPSNCDIAWAAVLGHPYGPNTERGIFKTTDGGKTWQRVLYRDDRTGGVDLSLD
                     PSNPDVMYAGLWQVNRTSWSLESGGPGSGMFKSTDGGRTWTELTRNAGLPKGVWGKIG
                     LSVSGADRNRVYAIIEAEDGGVFRSDDAGQTWTRTNEDRRLRQRAFYYTRIYADPKDK
                     DLVYVLNVGFHKSTDGGKTFPTTIRVPHGDNHDMWIAPNDNQRMVESNDGGGNVSVNG
                     GQTWTDQDYPTAQLYHIIASNHKPYWVCGAQQDNSTACVRSRGWPQMAPLVAVGGGES
                     GYIANDPENPNIFYAGSYGGLLTRYDYSVGASQVINVWPENPMGHSSSDIRERFQWTF
                     PIVFSRVGPKKLYVGSQHLWVTTTDGKSWQKISPDLTRHDPKTMGPSGGPITKDQTGV
                     ETYATIFTIAPSQHNANVIWTGSDDGYVFLTQDGGKTWNNVTPRDLPELSRISLIDVS
                     PHRPGTAFMAAKRFQLDDRAPYIYRTDDYGKTWTKIVNGIAAGHYVHAVREDHVRAGL
                     LFAGTEHGVYISFDNGTSWQPFSRNLPDVQVSDLVIKDNDLVIGTHGRSAYVMDNITP
                     LRELNRTIASQNVVLFRPSDAARGLDQTVAISYFLKQPAQKVTI"
BASE COUNT          416 a          671 c          624 g          471 t
ORIGIN      
        1 tcgatcgtga ccttctgcgc cggctgcttc aggaaatacg aaatcgcgac ggtctgatct
       61 agaccgcggg ccgcgtctga gggcctgaaa agcacgacgt tctgcgaagc gatggtgcgg
      121 ttcagctcac gcaacggcgt gatgttgtcc atgacgtaag cggagcgacc gtgcgtgccg
      181 attaccaggt cattgtcctt gatgaccaaa tccgaaacct gaacgtccgg caaattgcga
      241 ctaaacggct gccagctcgt tccgttgtcg aacgagatgt agacgccgtg ttccgtgccc
      301 gcgaacaaca gcccagcccg cacatgatcc tcgcgtaccg cgtgaacgta gtggccggct
      361 gcaatgccgt tcacgatctt cgtccacgtc ttgccgtaat catcggttcg atagatatac
      421 ggtgcgcgat catcgagttg aaaccgcttg gcagccatga atgcagtgcc gggccgatgc
      481 ggcgaaacat cgatcaggct gatgcgggat aactccggca aatcgcgcgg tgtaacgttg
      541 ttccaggtct tgccgccgtc ctgcgtgaga aacacgtaac catcgtcgct gccagtccaa
      601 atcacatttg cattgtgctg cgacggcgca atcgtgaaaa tcgtcgcgta agtttcgacg
      661 ccggtctggt ccttggtaat tggaccgccc gatgggccca tcgtcttcgg atcatgccgc
      721 gttagatcgg gactgatctt ctgccagctc ttgccgtcgg tggttgtcac ccacaaatgc
      781 tgcgatccga cgtacaactt ctttggaccc acgcgcgaga aaacgatcgg gaacgtccac
      841 tggaagcgtt cacggatgtc cgatgatgag tgccccatcg gattttccgg ccacacgttg
      901 atcacttgtg atgcgccgac cgagtaatcg tagcgtgtga gcaacccgcc gtagctaccc
      961 gcgtagaaga tgttgggatt ctccggatcg ttcgcgatgt agccgctctc accgccaccc
     1021 actgccacca gcggcgccat ctgcggccag ccgcggctgc gcacgcacgc ggtgctgttg
     1081 tcctgctgtg cgccacatac ccaatacggc ttatgattcg acgcgatgat gtgatacagc
     1141 tgcgccgtcg gataatcctg atcggtccag gtctgaccgc cattgactga aacgttaccg
     1201 ccgccgtcgt tcgattcgac catgcgttga ttgtcgttgg gcgcaatcca catgtcgtga
     1261 ttgtcgccgt gcggcacgcg aatagtcgtg gggaacgtct tgccgccgtc tgtcgacttg
     1321 tgaaacccaa cgttcaggac atacacgagg tctttgtctt ttggatcggc atagatgcgc
     1381 gtgtagtaga acgcgcgctg ccgcagccgc cgatcctcat tggtgcgcgt ccaggtttgg
     1441 cccgcgtcgt cggagcgaaa cacgccgccg tcttcagctt cgatgatggc ataaacgcgg
     1501 ttgcgatctg cgcctgatac agataggccg attttacccc acacgccctt cggcaggcca
     1561 gcgttgcgcg tcaactccgt ccaggtgcgt ccgccgtcag tgctcttgaa catgccgctg
     1621 ccgggtccgc cgctctcgag tgaccatgag gtcctgttga cctgccaaag accggcgtac
     1681 atcacgtctg gatttgatgg atcaagcgag agatcgacgc cgcccgttct atcatcgcgg
     1741 tacaacacgc gctgccacgt cttgccgcca tcagtggttt tgaaaattcc gcgctccgtg
     1801 ttcggaccgt acggatgtcc aagcaccgcg gcccaggcga tatcgcagtt gcttgggtgc
     1861 acgcgaatgc gcgcaatcgc ctgcgaatca tgcaatccgc tgtgcaccca gttggtgccg
     1921 ccattggtgg tcttgtaaac gccatcaccc tgcatgatgt tgccgcgcag ctgggtttcg
     1981 cccatgccca cgtacaagac atccgggttg gcctcgcaca ggccaatgga gccgacggat
     2041 gagctcttaa aatcgcgatc cgaaacggcg cgccacgtgg tgccgccatc agtcgtcttc
     2101 caaacaccgc cgccggtcgc gccgaagtag tattcgttcg gccggcttac gctgcctgcg
     2161 acagcgatcg accggccgcc tc
//
LOCUS       DASWTX010000712         4742 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_8366, whole genome shotgun sequence.
ACCESSION   DASWTX010000712 DASWTX010000000
VERSION     DASWTX010000712.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4742)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4742)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4742
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8366"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..729
                     /gene="eda"
                     /locus_tag="VGD38_10820"
     CDS             <1..729
                     /gene="eda"
                     /locus_tag="VGD38_10820"
                     /EC_number="4.1.2.14"
                     /EC_number="4.1.3.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR01182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008675 -
                     2-dehydro-3-deoxy-phosphogluconate aldolase activity
                     [Evidence IEA];
                     GO_function: GO:0008700 - 4-hydroxy-2-oxoglutarate
                     aldolase activity [Evidence IEA];
                     GO_process: GO:0009084 - glutamine family amino acid
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009255 - Entner-Doudoroff pathway through
                     6-phosphogluconate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HEY0728553.1"
                     /translation="GDERRHGASRSMNKAEVIQTIRDIGVIPVVRAQSADEAMQAIDA
                     IREGGISILEITMTVPGAVGVIEEVSKRYGNEALVGAGTVLDPETARACILAGAQFIV
                     SPALNTETVEVCRYNEIAVMPGALTPTEVVQAWRSGADFVKVFPAGAVGGASYLKALK
                     APLPQIELIPTGGVSLKTAADIINAGASALGVGADLVDLQAIREGQQQLITERAREFV
                     RIVREARSCGFSQALLVPELPARA"
     gene            complement(686..1417)
                     /locus_tag="VGD38_10825"
     CDS             complement(686..1417)
                     /locus_tag="VGD38_10825"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FadR/GntR family transcriptional regulator"
                     /protein_id="HEY0728554.1"
                     /translation="MAEANANIFKAIDAERRGTSFEEVVTQLREMIHRGELRPGDRLP
                     PERDLAKQLGVSRPTLRAGISSLAAVGVLQPRRGAGTFVVEAEGPPTLDSSALRLMAS
                     LQRFTPAEMFEARRSLEMSIAALAAERATGEQMAEMSEEITGMFASLDEPEQFLVHDM
                     RFHQTVAAASGNRIMTALMNMVATILFEVRSKTVRRARDLKESAEMHRAIYRAIRDRN
                     PEAARNAMRDHLMLAQAAQEQEELD"
     gene            complement(1429..3957)
                     /locus_tag="VGD38_10830"
     CDS             complement(1429..3957)
                     /locus_tag="VGD38_10830"
                     /inference="COORDINATES: protein motif:HMM:NF019113.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 88 protein"
                     /protein_id="HEY0728555.1"
                     /translation="MTTRRSFIKHALLSGVAVAVTPRLVAALSAENPWQTVMPSILER
                     IKPPRFPNRTFNLHRFGAKADGRTDCTAAFRNAIDACSKAGGGRVIVPSGAYLTGAIH
                     LKSNVNLHISHGATVKFSQNPKDYLPVVFSRWEGVELFNYSPFIYAFEQRNIAITGAG
                     TLDGQSDNEHWWPWNGRPQYGWKEGLKHQRPDRNSLFGMAERGVPVRERVFGEGHYLR
                     PQFIQPYRCQNVLIDGVTIQNSPMWEIHPVLCRNVIVQNVKINSHGPNNDGCDPESCT
                     DVLIKDCYFDTGDDCIAIKAGRNADGRRLNAPTENIIVQGCRMKDGHGGITVGSEISG
                     GVRNLFAENCRLDSPNLDHALRVKNNAMRGGLLENLHFRNIEVGQVAHAVITIDFNYE
                     EGTKGSFIPVVRDYTVENLRSGKSKHALDVQGLTNAPVINLRLTNCTFDNVAEGSILK
                     NVVDANFEDVKINGKSYAKKPISEQAAATAMTALWGGGYPAKWTYDHGLVLKGIEQVW
                     HNTRDEQYLAYIKRSMDHFVDDDGAIRTYTIDEYNIDHVLPGRNLLFLYKQTGQEKYR
                     KAAALLREQLKTHPRTSEGGFWHKKIYPWQMWLDGLYMGEPFYAEYAVTFNEKNAFDD
                     IAKQFILMERHARDAKTGLLYHGWDESRKQRWANPTTGRSPNFWGRAMGWYAMGLVDT
                     LDHFPQRHPQRAELIAILNRLARAVAKYQEPSSGLWYQIVDKANAKGNYLESSAACMF
                     VYALAKGVRKGYLPASYMRVAENGYRGITREFLRTDANGQLNLERTVSVNGLGGNPYR
                     DGSYEYYLSEKVVTNDPKGVGALILAAVEMERRGARATGKKRVS"
     gene            complement(3954..>4742)
                     /gene="pelA"
                     /locus_tag="VGD38_10835"
     CDS             complement(3954..>4742)
                     /gene="pelA"
                     /locus_tag="VGD38_10835"
                     /EC_number="4.2.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF021041.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030570 - pectate lyase activity [Evidence
                     IEA];
                     GO_process: GO:0045490 - pectin catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pectate lyase"
                     /protein_id="HEY0728556.1"
                     /translation="RAAVLRQKKKNDSTIDNSSTFTQLSFLARVFTAQHHERHRESFI
                     KGLDYLLKAQYPNGGWPQFYPDLSGYYKHITFNDGAMVGVLKLLRDVAQAKPVFAFVD
                     EARRARAAEAVEKGIECILKTQVVVNGKRTVWCAQHDEVTLAPATARKYEVPSLSGGE
                     SVDIVRFLMSIKDPSPSVIESIESAVAWFKQSSVKDPKGTITWARFYELGTNRPIFVG
                     RDGVIKYNIAEIDEERRNNYAWYVDDAAKLLSREYPAWRKKTTR"
BASE COUNT          873 a         1344 c         1432 g         1093 t
ORIGIN      
        1 ggtgatgaaa ggcggcacgg cgcgagtcga tcgatgaaca aagctgaagt catacaaact
       61 attcgcgaca tcggagtcat tcccgtggtg cgcgcgcagt ccgcggacga agcgatgcag
      121 gcgatcgacg cgattcgcga aggcggcatc tcgattctcg agatcacgat gacggtcccg
      181 ggcgcggtcg gcgtgatcga agaagtgtcg aagcgttatg gcaacgaagc gctggttggc
      241 gcaggcaccg tgctcgatcc cgaaactgcg cgagcgtgta ttctcgccgg tgcacagttt
      301 atcgttagcc ccgcgttgaa tactgaaacg gtagaagtct gccgctacaa tgagattgcc
      361 gtgatgccgg gtgcgttgac gccgactgaa gtggtccagg cgtggagatc gggcgcggat
      421 tttgtaaagg tgtttccggc gggtgcagtc ggcggcgcga gttacctgaa ggcattgaaa
      481 gcgccgttgc cgcaaatcga attgataccg acgggtggtg tgtcgttgaa gacggccgcg
      541 gatattatta acgccggtgc aagcgcgctc ggtgtgggtg cggatttagt tgatctccaa
      601 gcgatacgtg agggtcagca gcagttaatt actgagcgcg cgcgcgagtt tgtgaggatt
      661 gttcgggaag ctcgatcctg tggctttagt caagctcttc ttgttcctga gctgcctgcg
      721 cgagcatgag gtgatcgcgc atcgcgttgc gcgcggcttc gggattgcga tcgcgaatgg
      781 cgcgataaat tgcccggtgc atctcggccg actccttcaa atccctcgcc cgccgcaccg
      841 tcttgctgcg cacttcaaac aggatggtcg cgaccatgtt catcagcgcc gtcatgattc
      901 gattacctga cgctgccgcg accgtctgat gaaaacgcat gtcgtgaacg agaaactgtt
      961 ccggctcgtc gagcgacgca aacatgcccg tgatctcttc cgacatctcg gccatctgtt
     1021 cgcccgtcgc acgctcagcc gcgagcgccg caatcgacat ctccaaagat cgtcgcgctt
     1081 caaacatctc ggccggtgtg aagcgttgca gcgaagccat caaacgcaac gcgctgctgt
     1141 cgagtgtcgg tggaccttca gcttcgacga cgaaagttcc cgcgccacga cgcggttgca
     1201 acacgccgac tgcggcaagg gaactgatgc ccgcgcgcaa cgtcggacgg ctgacgccga
     1261 gctgtttggc gaggtctctt tccggcggca gtcgatcgcc gggccgcagc tcgccgcgat
     1321 gaatcatctc gcgaagctgc gtgacgacct cttcgaaact ggtgccgcgg cgttccgcgt
     1381 cgatggcctt gaaaatgttt gcgtttgctt ccgccatttg cctgctggtt agcttaccct
     1441 tttcttgccg gttgcacgag cgccacgtcg ctccatttca acagcggcga gtatcagcgc
     1501 gccgacgcct ttcggatcgt tcgtgacgac tttctcgctg aggtagtact cgtaactgcc
     1561 gtcgcgatat ggattgccgc cgaggccgtt aacgctgacg gtgcgttcga gattcaattg
     1621 accattcgca tcggtccgca gaaactctct cgtgattcca cgataaccat tctccgcgac
     1681 gcgcatgtag ctcgccggca agtagccctt gcgcacgcct ttcgcgagcg cgtagacaaa
     1741 catgcacgca gcggatgact cgagatagtt tcctttcgcg tttgctttgt cgacgatctg
     1801 ataccagaga ccggagcttg gctcctggta cttcgcgacc gcgcgcgcga gtcgattaag
     1861 tatcgcgatc aactcggctc gttgtgggtg cctctgcgga aagtggtcca gggtatcgac
     1921 gaggcccatc gcgtaccagc ccatcgcgcg gccccagaag tttggcgagc gcccggttgt
     1981 cggattggcc caacgctgct ttcgcgattc gtcccaaccg tgatagagca ggccggtctt
     2041 cgcgtcgcgc gcgtggcgtt ccatcaggat gaactgcttc gcgatgtcgt cgaaggcgtt
     2101 cttttcgttg aacgtgacgg catactcggc gtagaaaggc tcgcccatgt agagaccgtc
     2161 gagccacatc tgccacggat agatcttctt gtgccagaag ccgccttcgg aagtgcgggg
     2221 gtgagttttg agttgttcgc gcagcagagc ggcggctttg cgatactttt cctgaccggt
     2281 ctgtttgtaa agaaacagca gattgcgtcc gggaagaacg tggtcgatgt tgtactcgtc
     2341 gatcgtgtag gtgcggatgg cgccgtcgtc gtcgacgaag tggtccatgc tgcgcttgat
     2401 gtacgcgagg tactgctcgt cacgcgtgtt gtgccagacc tgttcgatcc ctttcagcac
     2461 gaggccgtga tcgtacgtcc acttcgcggg ataacctcca ccccacaagg ccgtcatcgc
     2521 ggtcgctgct gcctgttcgg agatcggctt ctttgcgtag gacttgccgt tgatcttaac
     2581 gtcttcaaaa tttgcgtcta cgacgttctt gagaatgctg ccctcggcga cgttatcgaa
     2641 cgtgcagttt gtaagacgca ggttgatcac gggcgcattg gtcaggccct gcacgtctaa
     2701 cgcgtgcttg ctcttgccgc tgcgcaggtt ttctaccgtg tagtcgcgca cgacggggat
     2761 gaacgacccc ttcgttcctt cttcatagtt gaaatcgatc gtgatcacgg cgtgggccac
     2821 ttgcccgact tcgatgttgc ggaagtgcag gttctccaac agcccgccgc gcatcgcgtt
     2881 gttcttcaca cgcaacgcgt gatcgaggtt cgggctgtcg agccggcagt tttccgcaaa
     2941 caggttgcgc acgccgccgg agatctcgct gccgacagtg atcccgccat gaccgtcttt
     3001 catccggcag ccctgcacga tgatgttttc ggtgggagcg ttgagccgcc gtccatccgc
     3061 attgcgtccg gccttgatcg cgatgcagtc gtccccggtg tcgaagtagc aatctttgat
     3121 cagcacgtcg gtgcacgatt cgggatcgca gccgtcgttg tttggtccat gactgttgat
     3181 cttcacgttc tgcacgatca cgttgcggca gagcaccgga tggatctccc acatcggcga
     3241 gttttgaatc gtgacgccgt cgatcagcac gttttgacag cgatatggtt gaatgaactg
     3301 cggccgcaga taatgacctt caccaaacac gcgctcgcgc acgggcacgc ctctttcagc
     3361 catgccgaac aaagagtttc gatccgggcg ctggtgcttc aagccttcct tccaaccgta
     3421 ttgcgggcgc ccgttccagg gccaccagtg ttcgttgtcg ctctgtccgt cgagcgtgcc
     3481 tgcgccggtg atggcgatgt ttcgttgttc gaacgcgtag atgaacggcg agtaattgaa
     3541 cagttcgacg ccttcccagc gcgagaagac gacgggcaag tagtctttcg gattctggct
     3601 gaacttcaca gtcgcgccgt gcgagatgtg gagattgacg ttgctcttca ggtggatcgc
     3661 gccggtgaga tacgcgcccg agggcacgat tacgcggcct ccgcctgctt tgctgcacgc
     3721 gtcaatggcg ttgcgaaagg ctgcggtgca atcggtgcgg ccgtcggctt tcgcgccgaa
     3781 gcgatggaga ttgaatgtgc ggttcgggaa gcgcggcggc ttgatgcgtt cgagaatcga
     3841 aggcatcacc gtttgccacg ggttttccgc tgacaacgca gcgaccagtc gcggcgtgac
     3901 ggcgacggct acgccgctca gcaaagcgtg cttgatgaaa ctgcgtcgtg ttgtcatctc
     3961 gtagtcttct tgcgccaggc cggatactcg cggctcagta gtttggcggc atcgtcaacg
     4021 taccaggcgt agttgttgcg gcgctcttca tcgatctcgg cgatgttgta cttgatcacg
     4081 ccatcgcggc caacaaagat cggccggtta gtgccgagtt cgtaaaagcg ggcccaggtt
     4141 atagtaccct ttgggtcttt gaccgaggat tgtttgaacc aggccactgc ggactcgata
     4201 gattcaatta cagacggtga aggatctttg atcgacatca ggaaccgcac gatgtcaaca
     4261 ctctctccgc cgctcaacga aggcacttca tactttcgcg cggtagcggg ggcgagtgtc
     4321 acctcgtcgt gttgcgcgca ccagacagtg cgtttgccgt ttacgacaac ctgcgttttg
     4381 agaatgcact cgattccttt ttcaactgcc tcggcggcgc gcgcgcggcg agcttcgtcg
     4441 acgaatgcga aaacgggttt cgcttgtgcg acgtcgcgca gcagcttcaa cacaccgacc
     4501 atcgcgccgt cgttgaacgt gatgtgtttg tagtaaccac tcaggtccgg gtagaactgc
     4561 ggccagccgc cgttcggata ctgcgctttc agcaggtaat cgagaccttt aataaatgac
     4621 tcgcgatgac gttcatgatg ttgcgccgtg aagacacgcg cgagaaacga taactgcgtg
     4681 aatgtcgaac tgttgtcgat cgtcgagtcg ttcttctttt tctgccggag aaccgcggct
     4741 cg
//
LOCUS       DASWTX010000713         4989 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_338775, whole genome shotgun sequence.
ACCESSION   DASWTX010000713 DASWTX010000000
VERSION     DASWTX010000713.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4989)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4989)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4989
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338775"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            109..1536
                     /locus_tag="VGD38_10840"
     CDS             109..1536
                     /locus_tag="VGD38_10840"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY0728557.1"
                     /translation="MKTEKRNSRKGSVLVVDDEEIMREVLETLLTAEGYRVDLAKTGE
                     EGLEAYGRRAFDVVLLDVSMPGIGGLRALEEFLKMDPEAVIVMITAYATFDTAIAAWE
                     RGAFGCIRKPFQNEQIIAQIAAGIKRRRKEEERRTLRRAMSKAVDRGEIIGRSDLMQE
                     VFRLVEQVAPARSTVLITGESGTGKELIAKAIHEASTRAGRPFVTVNSSNIPSELLES
                     ELFGHTRGAFTGAVAAKKGLFEVADGGSIFLDEIGDIPPETQVRLLRVIQEREFTPLG
                     DTAPRRVDVRIIAATNIDLKEAVRQGSFREDLYYRLAVVPIELPPLRDRNEDILPLAQ
                     HFIQKYNDENGRNVSEQLAPEVLALLEQYSWPGNVRELENTIERAVVIAPGDEITKEC
                     LRAEISDPKSVASGHQDGASNAAVGDIGRGINFYEEVRRFEIDLIRRALEQTGGHQSR
                     AARLLGMNATTLNSKIKTYNINLRP"
     gene            1533..2000
                     /locus_tag="VGD38_10845"
     CDS             1533..2000
                     /locus_tag="VGD38_10845"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY0728558.1"
                     /translation="MKRRELDGCPITGALQMLGDKWTMLVVRELVSGPKRTMELLNSL
                     FPISSRTLVARLRDMENDNFVERRDFGGNPPHIEYSLTERGRLLLPLLESLRQLGLVL
                     GCNDCRDRKLRLGSYCEPCPLNENGIALPQLPAAERPATPVHRREQDDSIVLL"
     gene            complement(1997..3115)
                     /gene="trxB"
                     /locus_tag="VGD38_10850"
     CDS             complement(1997..3115)
                     /gene="trxB"
                     /locus_tag="VGD38_10850"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEY0728559.1"
                     /translation="MRKRDVVIIGSGPAGLTAAIYTARASLKPLLIDAPADATQQTTP
                     GGQLMITTDVENYPGFSEGIQGPELMHEFRKQAERFGTEFMEGWITEVDLSERPFQIY
                     IDGGPTISTETLIIATGASAKWLGIPGEAKVPDGFGGNGVSACATCDGPLPAFRNKTL
                     VVVGGGDTAMEEATFLTRYAAKVYVVHRRDKLRASKIMQEKAFKNEKIEFIWNTAVRE
                     IVGTPEEGVSGVRLENLHTGEERIFPCAGVFVAIGHRPNTDLFKGQLDMDEIGYLKTG
                     GHSTATNIPGVFACGDVQDSFYRQAVTAAGTGCMSAIDAERFLDHLPVAMPSGEEVTI
                     EGEHITADRQAIITPDGHMIPNDTEVPSDAQVVVEDQV"
     gene            3200..4093
                     /locus_tag="VGD38_10855"
     CDS             3200..4093
                     /locus_tag="VGD38_10855"
                     /inference="COORDINATES: protein motif:HMM:NF014757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HEY0728560.1"
                     /translation="MPTIETIAVIGAGTMGHGIAQVAAANGFRVLLNDVDREALARGV
                     RAIEGNLAKGIQLAKLTEDDRDRTLQHIHGTTKLEDCAAADLVIEAAPEKLELKQNIL
                     RLLENVSGHPFIFASNTSSLSISEIAAESRRPEAVVGRHFFNPVHIMRRVEIVVGKQT
                     SDGTVQTVTEVGRKMRKEPIVVKDVPGFASSRLGVALGLEAMRMVEQGVASPRDIDTA
                     MELGYNHPMGPLKLTDLVGLDVRLSIAEYLHRELGSETFRPPEVLRRMVSEGKLGKKT
                     GQGFYDWTKEDATARKGAQSS"
     gene            4112..4516
                     /locus_tag="VGD38_10860"
     CDS             4112..4516
                     /locus_tag="VGD38_10860"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HEY0728561.1"
                     /translation="MSTPYNNEERRFALRMALRLPIVISGRTEDGSAWSEPTETDDIS
                     TSGALFHLNQKVTRGERLYLRAHRPDGTPIEATALVVRVAPAIYGTARVGVQIAEPTE
                     NWLRLFVSWVADEQPVPPDPDGPPPEQAPTKS"
     gene            4535..>4989
                     /locus_tag="VGD38_10865"
     CDS             4535..>4989
                     /locus_tag="VGD38_10865"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HEY0728562.1"
                     /translation="MPQTYETLLLEKRERVAIITINRPDKLNALNIKTREEGAALLDE
                     LRNDDSVGVVVITGAGEKAFIAGADIGEFAGRTSVTQREVMMTKSLFTTIDVFPKPII
                     AMINGFCLGGGCELALACDIRIASENASFGQPEIKLGIIPGGGGTQRLTR"
BASE COUNT         1083 a         1474 c         1447 g          985 t
ORIGIN      
        1 ccagggttgt tttcaaccct gggttttttg ttttctaagc gaaggcaacg ctgaaagcgt
       61 tggcgacctc tttgttttac gttgtgaagt agctacacta cgcccttcat gaagacggaa
      121 aagcgtaact ccagaaaagg ctccgtactc gtcgtcgacg acgaggagat catgcgtgag
      181 gtgctggaga cacttctgac cgccgagggt tatcgggtcg atcttgccaa gacaggcgag
      241 gagggactcg aggcttatgg gcggcgcgcg tttgatgtcg tgctgctcga tgtgtccatg
      301 cccggcatcg gcgggctgcg cgcgctcgaa gagtttttga agatggatcc ggaggccgtc
      361 atcgtcatga tcacggccta cgcgacgttc gacaccgcca tcgccgcctg ggagcgcggt
      421 gcgtttggct gcatccgcaa gccgtttcaa aacgaacaga tcatcgcgca gatcgccgcc
      481 ggcattaaac gccgccgcaa agaagaagaa cgacgcacac tgcgacgcgc gatgagcaaa
      541 gccgtcgatc gcggcgagat catcggccgc tccgatctga tgcaggaagt tttccggctc
      601 gtcgaacaag tcgcgcccgc acgctcgacg gttctgatca cgggtgagag cggcaccggt
      661 aaggaactga tcgccaaagc aattcacgaa gcgagcacac gcgcgggccg cccgtttgtc
      721 accgtcaaca gttcaaacat tccttcagag ctgctcgagt ccgaattgtt cggccacacg
      781 cgcggcgcat tcactggcgc cgttgctgcc aagaaaggtc tgttcgaagt cgcagacggc
      841 ggctcgatct ttctcgacga aatcggcgac ataccgcccg aaacccaggt gcgtttgctg
      901 cgcgtgattc aggaacgcga gttcacaccg ctcggcgaca cagcgccgcg gcgcgtcgac
      961 gtgcgcatca tcgccgcgac aaacatcgat ctgaaagaag ccgtacggca gggaagtttt
     1021 cgcgaggatc tttactatcg actcgccgtc gtaccgatcg agttgccgcc tttgcgcgat
     1081 cgcaacgaag acatcctgcc cctcgcccaa cacttcattc agaagtacaa cgacgagaac
     1141 ggccgcaacg tctccgaaca actcgcgccc gaagttctcg cactgctcga gcagtattcc
     1201 tggcccggca atgtgcgtga actcgaaaac acgatcgaac gcgcggtcgt gatcgcgccc
     1261 ggtgacgaga tcaccaaaga atgcctgcgc gcggaaatca gcgatccgaa atcagtcgcg
     1321 tccggccatc aggacggcgc aagcaacgca gcggttggag acatcggccg cggcatcaat
     1381 ttctacgaag aagtgcgccg gtttgaaatc gacctgatcc ggcgcgcgct cgaacaaaca
     1441 ggcgggcatc aatcgcgcgc cgcgcgtttg ctcggcatga acgccacaac gctcaactcg
     1501 aaaatcaaga cgtacaacat caacttaaga ccatgaaacg acgcgaactc gacggctgtc
     1561 cgatcaccgg cgcactacag atgctgggcg ataagtggac catgctggtc gtgcgtgaac
     1621 tcgtctccgg tccgaagcga acgatggaac tgctcaacag cctcttcccg atcagcagcc
     1681 gcacactcgt cgcgcgtttg cgcgacatgg aaaacgacaa cttcgtcgag cgcagagact
     1741 tcggcggcaa cccgccgcac atcgagtatt cgttaaccga gcgcggccgg ttactgttgc
     1801 cgctgctcga atcgctgcgg caactcggcc tggttttagg ttgtaatgat tgtcgagatc
     1861 gaaaactgcg tttgggaagt tattgtgaac cgtgtccgct aaacgagaac ggaatcgctc
     1921 tcccgcaact gcccgccgcc gaacgtccgg caacgccggt tcaccgccgc gagcaagacg
     1981 actcgatcgt gctgctctaa acctgatctt ctacaacgac ctgcgcatcg gacggcactt
     2041 cagtgtcatt cggaatcatg tgcccgtcag gcgtgatgat ggcctgacga tccgccgtga
     2101 tgtgttcgcc ttcgatcgtg acctcttcgc cactcggcat cgccaccggc aggtgatcga
     2161 gaaaacgttc cgcgtcgatc gccgacatgc agccggttcc ggccgccgtc acagcctgcc
     2221 gatagaacga gtcctgcacg tcgccacacg caaacacgcc cgggatgttc gtcgccgtcg
     2281 agtgccctcc cgtcttgagg tagccgatct catccatatc caactggccc ttgaacaggt
     2341 cggtattcgg ccgatgtcca atcgcgacga aaacgcccgc acacggaaaa atacgctctt
     2401 cacccgtgtg cagattctcg agtcgaacac cgctgacgcc ttcttccggc gtgccgacaa
     2461 tctcgcgcac cgcggtgttc cagataaact cgatcttctc gttcttgaac gccttttcct
     2521 gcatgatctt cgacgcgcgc aacttgtcgc gccggtgaac cacgtaaact ttcgcggcgt
     2581 agcgcgtcag aaacgtcgct tcttccatcg ccgtatcgcc gccgccaacc acgaccagag
     2641 tcttgttacg aaaagcaggc aacggaccgt cgcaagtcgc acaggcagaa acgccgttgc
     2701 cgccgaaacc gtccggaacc ttcgcctcac cgggaatccc gagccacttg gcggacgcgc
     2761 ccgtcgcgat gatcagcgtc tcggtcgaaa tcgtcggccc accgtcaatg tagatctgaa
     2821 aaggacgctc gctcaggtcg acttccgtga tccagccttc cataaactcg gtcccgaaac
     2881 gttcggcctg tttacgaaac tcgtgcatca gctcggggcc ctgaatgcct tccgaaaagc
     2941 ccggataatt ctcgacatca gtcgtgatca tcaactgtcc gccgggcgtg gtttgctgtg
     3001 tggcatcggc cggggcgtca atgagcaggg gtttgaggct cgcgcgtgcg gtgtaaatcg
     3061 cggcggtcag tccggcgggt ccggatccaa taataacgac gtctcttttt cgcatttggt
     3121 tatccattag gagcaaggga gtatagccat ttcggttgag cgtatagtat aactagcgtc
     3181 aatgaggtag tcgaactctg tgccaacgat tgaaactatc gccgttattg gcgcgggcac
     3241 gatgggccac gggattgccc aggttgccgc cgccaatggg tttagagttc ttctcaacga
     3301 cgtggatcgt gaagccctgg cgcgcggggt tcgcgctatc gaaggaaatc tcgccaaggg
     3361 aatccaactc gcgaagttga ctgaagacga tcgcgaccgc actttgcagc acattcatgg
     3421 cactaccaaa ctggaggatt gtgccgcagc ggacctggtc atagaagctg cgccggagaa
     3481 gttggaactg aaacagaaca tactccggct gctcgaaaac gtttccggcc acccattcat
     3541 ttttgcgagc aatacttcgt cgctgtctat ttcggaaatc gccgcggagt cgcgccgtcc
     3601 cgaggccgtt gtcggcaggc actttttcaa tccggtgcat atcatgcggc gggtggagat
     3661 cgtcgtaggc aagcagacaa gcgacgggac cgtacagaca gtcacggaag ttggccgcaa
     3721 gatgcgcaag gagccgatcg tcgtcaagga cgttccgggt tttgcatcga gccggttggg
     3781 agtcgcgctc ggactcgagg cgatgcggat ggtcgagcag ggcgtcgcga gtccccgcga
     3841 cattgatacc gcgatggaac tcggttacaa ccatccgatg ggaccgttga agttgaccga
     3901 cctcgtcggg ctcgacgtgc gtttgagcat cgccgagtat ctgcatcgcg agctgggctc
     3961 ggaaacgttt cgaccgcctg aagttttgcg ccgcatggtg agcgaaggaa agttgggaaa
     4021 gaaaaccggc cagggttttt acgactggac caaagaagac gccactgctc gtaaaggcgc
     4081 gcagtcttct taaacgctcc tgaatgtgac gatgagcacg ccgtataaca acgaagaaag
     4141 acgattcgcg ctacgcatgg cgttgcgcct gccgattgtc atttccggcc gcaccgaaga
     4201 cggttccgcg tggagcgagc cgaccgagac cgacgacatc tcgacttccg gcgcactctt
     4261 tcatctgaat cagaaagtga cgcgcggcga gcgtttgtac ttgcgggcgc accggcctga
     4321 cggcacaccg atcgaagcga ccgcgctcgt ggtgcgtgtg gcgccggcga tttacggcac
     4381 cgcgcgcgtc ggcgtgcaga tcgctgagcc gacggaaaac tggctgcggt tgtttgtgtc
     4441 gtgggttgcc gatgaacagc ctgtaccgcc cgatccggat ggcccaccac cggaacaagc
     4501 ccctacgaaa tcctaattta gttcggagtt attgatgccg cagacatacg agactttgct
     4561 gctcgaaaaa cgcgagcgcg ttgccattat cacgatcaat cggcctgaca aactaaacgc
     4621 actgaacatc aagacgcgcg aagaaggcgc tgctttgctg gacgaactgc gcaacgacga
     4681 ttcagtcggc gtggttgtaa tcaccggcgc gggtgaaaaa gctttcatcg ccggcgcgga
     4741 catcggcgag tttgccggac gcacgtcggt cacgcagcgc gaagtgatga tgaccaagtc
     4801 gttattcacg acgatcgacg tctttccgaa acctataatc gcgatgatca acggtttctg
     4861 tttgggcggc ggttgtgagc tcgcattggc gtgcgacatt cgcatcgcga gcgagaacgc
     4921 gtcgtttggc caaccagaga tcaagctcgg aatcattcct ggcggcggcg gcacgcaacg
     4981 tttgacgcg
//
LOCUS       DASWTX010000714         2294 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_225408, whole genome shotgun sequence.
ACCESSION   DASWTX010000714 DASWTX010000000
VERSION     DASWTX010000714.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2294
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225408"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..362
                     /locus_tag="VGD38_10870"
     CDS             <1..362
                     /locus_tag="VGD38_10870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728563.1"
                     /translation="LNSNHDFVAYRGAGASDRLQVRFDDDRYLKYIPIRRAWTTCIEE
                     KLPAGVAGALVNQTHVFDDLYLFIDEQQKRLYKAIDGHRSIAEILDHEQDASAAREFF
                     EKLWWLDQAVFDTSKAQ"
     gene            760..2238
                     /locus_tag="VGD38_10875"
     CDS             760..2238
                     /locus_tag="VGD38_10875"
                     /EC_number="3.2.1.21"
                     /inference="COORDINATES: protein motif:HMM:NF012457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008422 - beta-glucosidase activity
                     [Evidence IEA];
                     GO_process: GO:0030245 - cellulose catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GH1 family beta-glucosidase"
                     /protein_id="HEY0728564.1"
                     /translation="MSKKVSRRTFAKLSGAAALAMSAELPSLGSTSAPQTRSAATNYS
                     GREFPRGFIWGTATASYQVEGAVKEDGRGPSIWDTFSHTPGKVVNNANGDVANDHYHL
                     YKSDVQLMKSLGVKAYRFSIAWPRVFPNGDGPPNPKGLDFYNRLVDELLANGITPFAT
                     MYHWDLPQSLQDRFGGWEGRETAKAFGDYAGYVAARLTDRVKHIFTINEFGAFIEVGY
                     RWGIHAPGLKLTGLRLNQTRHHAVLGHGLAVQAIRASAKNGTRIGNAENITIPVPVVE
                     TAEHVKAAESAMREMNAQYLTVIMEGKYTDWYLKSAGADAPKFTPEDLKIISSPLDFV
                     GINVYTPQFVRADQSSPVGYAHVPHPPSFPHAPSPWLFVAPDALYWGPRHVAKLWGVK
                     ELYITENGCSSADVPAQDGRVYDTDRVTYLRSYLTQLRRATAEGVPVRGYFLWSLMDN
                     FEWADGYTNRFGIHYVDYATQKRTPKLSADFYREVIARNAVV"
BASE COUNT          495 a          615 c          704 g          480 t
ORIGIN      
        1 gattgaacag taaccacgac tttgttgctt atcgcggtgc cggcgccagc gatcggttgc
       61 aagtacgttt cgacgacgat cgctacctta agtacatacc gatccggcgc gcgtggacca
      121 cgtgcatcga ggaaaagctg cctgccggcg tggcgggcgc gttggtcaac cagacacacg
      181 tcttcgacga cctttacctc ttcatcgacg agcaacagaa gcggctctac aaggcaatcg
      241 acggccaccg cagcatcgcc gagatcctgg accatgagca ggacgcctcg gccgcgcgcg
      301 aatttttcga gaagctctgg tggctcgatc aggcagtgtt cgacacgtcg aaagcgcagt
      361 gattgactta ttcagagtag tttgtacaat gcgcccatga aaaccaaaaa aacctcaaag
      421 acctcaaagg aacaaaagat taagcgccct ccccgcgcaa ttctttcgcg agaagaagtc
      481 ataaagcgaa tggaatcgtt tcccgagcga gcggagcggt tcattgagag tgtaagaacg
      541 ggtaagaggt acataccgga tgctcgagcg gacaagagtt gaggtttaca ttcctgctct
      601 ttccgcgacc gcgtaccaaa acctactaag cacctcttga agcagagttc actcatgctt
      661 tcggcgggag tagtgtcttg cgaggactac agggcagtta cctttcgggg acaggtgacc
      721 gcgtagggga tagcatcaat gtggaaggag gcctaacgct tgagcaagaa agtctcgaga
      781 cgtacttttg caaaactgag tggcgctgcc gcgctcgcga tgagtgccga actgccttcg
      841 ctcggctcta ctagtgctcc ccagacgcgt agtgccgcga ctaattattc ggggcgtgag
      901 tttccgcgcg ggtttatctg gggtacggca acggcctcct atcaagtgga gggtgcggtt
      961 aaggaagacg gccgtggtcc ttcaatctgg gacacgtttt cgcacacacc cggcaaggtt
     1021 gtgaataacg cgaatggcga cgtggcgaac gatcattacc acctttacaa gagtgacgtg
     1081 cagttgatga agtcgctcgg cgtgaaggcg tatcggttct cgatcgcgtg gccgcgcgtg
     1141 tttccgaacg gcgatggtcc accgaatccg aaaggactcg acttctacaa tcgtctggtt
     1201 gatgagttgc tcgcgaacgg catcacgccg tttgcaacga tgtatcactg ggacttgccg
     1261 cagtcgttac aggatcgatt tggcggctgg gaaggacgcg agacggcgaa agctttcggc
     1321 gactacgctg gttatgtcgc ggcgcgtttg accgatcgcg tgaagcacat cttcacgatc
     1381 aacgagttcg gcgcgtttat tgaagtcggt tatcgctggg gaatacacgc gcccgggttg
     1441 aagctcacgg ggttgcgttt gaatcaaacg cgccatcacg cggtgttggg ccatgggctc
     1501 gcggtgcagg cgattcgcgc gagcgccaag aacggcacgc ggatcggaaa cgcggaaaac
     1561 atcacgattc cggtgcccgt cgtggaaacg gcggaacacg tcaaggctgc ggagagtgcg
     1621 atgcgcgaga tgaacgcgca gtatctcacc gtgatcatgg aagggaagta caccgactgg
     1681 tacttgaagt cggccggagc ggatgcgccg aagttcacgc cggaagattt gaagatcatt
     1741 tcgagtccgc tcgacttcgt cggcatcaac gtttacacgc cgcagtttgt gcgcgcggat
     1801 cagtcatcgc cggttggtta tgcgcacgtg cctcatccgc cgtcgtttcc gcacgcgccg
     1861 tcgccgtggc tctttgtcgc gccggatgcg ctgtattggg gaccgcgtca cgtcgcgaag
     1921 ttgtggggcg tgaaagagct ctacatcacg gagaatggtt gttcgtctgc ggacgtcccc
     1981 gcgcaggatg ggcgcgtcta cgacacggat cgcgttacgt acctgcgcag ttatctgacg
     2041 cagttgcgcc gcgcgacggc ggaaggcgtt ccggtgcgtg gttatttcct gtggagtttg
     2101 atggacaact tcgagtgggc cgacggctac accaatcgct tcggcattca ctacgtcgac
     2161 tacgccaccc aaaagcgcac ccccaagctg agcgccgatt tctaccgcga agtcatcgcg
     2221 cgcaacgcgg tggtgtgacg tatttggcca tagcgttttg ctcaacgcgc aaagaggagg
     2281 tgcgcatttc ggcg
//
LOCUS       DASWTX010000715         1831 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_181969, whole genome shotgun sequence.
ACCESSION   DASWTX010000715 DASWTX010000000
VERSION     DASWTX010000715.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1831)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1831)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1831
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181969"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1014
                     /locus_tag="VGD38_10880"
     CDS             <1..1014
                     /locus_tag="VGD38_10880"
                     /inference="COORDINATES: protein motif:HMM:NF014026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEY0728565.1"
                     /translation="NVKSIAVIGPLADDRRAPLGPWNGDGREENTVTMLAGIKAGVSA
                     QTKVGYAKGCDIKGDSDAGFGEAVALAREADVALVFVGESDEMGGEAASRSSLDLPGR
                     QMDLVKAIQATGKPTVVVLVNSRPMTFGWIVDNVPSILVAWMGGSQAGNAIADVVFGG
                     VNPSGKLPVTFPRTVGQVPIYYNHLNTGRPPEEQNKYSSKYLDVPWTPQFPFGYGLSY
                     TTFKVSNLQLSAPRMRATDKMVVSVDVENSGPRAGDEVVQLYIRDPVASLSRPVKELK
                     GFQRVTLKPGEKRRVEFTLLHDHLAFWNREMRFVVEPGEFRVMVGSNSRDVIEAKFEV
                     VER"
     gene            1059..>1831
                     /locus_tag="VGD38_10885"
     CDS             1059..>1831
                     /locus_tag="VGD38_10885"
                     /inference="COORDINATES: protein motif:HMM:NF021596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HEY0728566.1"
                     /translation="MSAASASATEAFIDDLQKRSFHYFWEQADPRTGLVPDRARMDGS
                     PLPESHRDVASIAATGFGLTGLCIAAERNWVERTQAIERARITLRFFDSRAFHQRGWF
                     YHWLDAKTGDRRWNSEISSIDTALLLGGILTVKQCFASDPEIVRLSNRIYHRVDFRWM
                     LNGHPLLLSHGWKPETGFLHPRWDTYSEDTILYILGIASPTHPISPASWYALWRDRYR
                     YEGNIYYTTIGVPLFMHQYSHAWIDFRNRRENRGDRIDY"
BASE COUNT          354 a          506 c          572 g          399 t
ORIGIN      
        1 aatgtgaagt cgatcgccgt gattggacca ctcgcggacg atcgccgtgc gccgcttggc
       61 ccgtggaatg gtgacgggcg tgaagaaaac acggtcacga tgctggcggg tatcaaggcg
      121 ggtgtttcgg cgcagacgaa ggtcggttat gcgaagggtt gtgacatcaa gggcgattcc
      181 gatgcgggat ttggtgaggc tgtcgcactc gctcgcgagg ctgacgtcgc gctcgtgttt
      241 gttggcgaga gcgacgagat gggtggcgaa gcggcgtcgc ggagttcgct cgatctgccg
      301 ggacggcaga tggatttggt caaagcgatt caagcgaccg gcaagccgac ggttgtcgtt
      361 ctggttaaca gcaggccgat gacgtttggc tggatcgtcg ataacgtgcc gtcgattctc
      421 gttgcgtgga tgggcggcag ccaggcggga aatgcgatcg ccgacgttgt tttcggtggt
      481 gttaatccga gtgggaagtt gccggtgacg tttccgcgca cggtcgggca ggtgccgatt
      541 tactacaacc acttgaacac gggccgtccg ccggaagagc agaataagta ctcgtcgaag
      601 tatctcgacg tgccgtggac gccgcagttc ccttttggtt acgggctcag ctacacgacg
      661 ttcaaagtga gcaacctgca actgagtgcg ccgcggatgc gcgcgacgga caagatggtg
      721 gtgagtgttg acgttgagaa ctcgggacca cgtgcgggtg acgaggtggt ccaactttac
      781 attcgcgatc cggttgcgtc gttatcgcgg ccggtgaaag agctcaaagg ttttcagcgc
      841 gtgacgttga agccgggtga gaagcggcgc gtggagttta cgctgttgca cgatcacctg
      901 gcgttttgga atcgtgagat gcgtttcgtg gtggagccgg gcgagttcag agtgatggtc
      961 ggatcgaatt cgcgcgatgt gatcgaggcg aagtttgaag tggttgagag gtagctccta
     1021 tccctaaaat tggctttact gtcctggttc taatttttat gtccgcggcc tcggcgagcg
     1081 ccaccgaggc tttcatcgac gaccttcaaa aacgctcttt ccactacttc tgggaacaag
     1141 ccgatccgcg caccggctta gtcccggatc gcgcgcgaat ggacggctcg ccgctgccgg
     1201 agagccatcg cgacgtggca agcatcgccg ccacaggttt cggccttacc ggactctgca
     1261 tcgcagccga gcgcaactgg gtagaacgca ctcaggcgat cgaacgcgcg cgtatcacgt
     1321 tgcgcttctt cgattcgcgc gcgtttcatc aacgcggctg gttctatcac tggctcgacg
     1381 caaagacagg cgaccgccgc tggaacagcg agatctcatc gatcgatacc gcgttgctgc
     1441 tcggcggtat tctcaccgtc aagcaatgct tcgccagcga tcctgaaatc gttcgcctct
     1501 ctaacaggat ttaccaccgc gtcgacttcc gctggatgct caacggccat ccgctactcc
     1561 tctcacacgg ctggaaaccc gaaacaggct tcctgcaccc gcgctgggac acttacagcg
     1621 aggacacgat cctctacatc ctcggcattg cctcgccgac gcacccgatt tcacccgctt
     1681 cgtggtacgc attgtggcgc gatcgttatc gttacgaagg caacatttac tacaccacga
     1741 tcggcgtgcc gctgttcatg catcagtact ctcacgcctg gatcgatttc cgcaaccggc
     1801 gcgaaaatcg cggtgaccgc atcgactact t
//
LOCUS       DASWTX010000716         1519 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_97929, whole genome shotgun sequence.
ACCESSION   DASWTX010000716 DASWTX010000000
VERSION     DASWTX010000716.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1519
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97929"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1095)
                     /locus_tag="VGD38_10890"
     CDS             complement(<1..1095)
                     /locus_tag="VGD38_10890"
                     /inference="COORDINATES: protein motif:HMM:NF014069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEY0728567.1"
                     /translation="MTERIYRDPVHNIIRLQTDSDEGDLMMRLIDAAEFQRLRRIKQL
                     GLGLYTYQGAEHSRFTHSLGAFHLMTRVLDRFSERYSIAPADRVAARAAALLHDVGHG
                     SFSHVMEKLINFHHEQHTVQVILDDGSEIGALLKSYSPDLPRNVAAIIEGSFKPSALA
                     QLVSSQLDVDRMDYLLRDSLMTGAKYGIYDLEWIINALAIDEDADRIYVEARGVYAVE
                     EYLQARYYMFRQVYFHRTLRSAEAALRSIIRRALRLLDEGKEVWHAPDTAFEKILRRE
                     ELSITEHLQIDDSDFVFHVKQWQRSGDEILSDLSRRFTARRLFKAIDLDMPQDQQAEF
                     LRGARKIVEQAGFDPEYYFVEDRASDLPYYN"
BASE COUNT          356 a          398 c          425 g          340 t
ORIGIN      
        1 gttgtagtac ggcagatcgc tcgcgcggtc ctcgacgaag tagtactcgg gatcgaaacc
       61 cgcctgctcc acaatctttc ttgctccacg cagaaactcc gcctgctgat cttgcggcat
      121 gtcgagatcg atcgctttga acaaacggcg cgcggtgaag cgacggctca gatcgctcag
      181 gatctcgtca cccgatcgct gccactgctt gacgtgaaaa acgaaatccg aatcgtcgat
      241 ctgaagatgt tctgtaatcg acaactcttc gcggcgcaga attttttcaa acgcagtgtc
      301 cggggcgtgc cagacttctt tgccttcgtc gagcagccgc aacgcacggc gaatgatcga
      361 acgcagcgct gcttccgccg aacgcaacgt gcgatgaaag tagacctggc gaaacatgta
      421 ataacgcgcc tgcaagtatt cctcgaccgc gtacacaccg cgcgcttcga catagattcg
      481 atccgcgtct tcgtcgatcg cgagcgcgtt gatgatccat tcgagatcgt agatgccata
      541 cttcgcgccc gtcatcagcg aatcgcgcag gagataatcc atgcgatcga cgtcaagctg
      601 cgacgatacg agttgggcca acgcagacgg tttgaaagag ccttcgataa tcgcggcgac
      661 attgcgcggc aggtcaggcg agtaagactt cagcaacgcg ccaatctccg atccgtcgtc
      721 gagtatgact tgcaccgtgt gttgctcgtg atgaaagttg atcaacttct ccatcacatg
      781 cgagaacgaa ccatggccca cgtcatgaag caaggcggcc gcgcgcgctg caactcgatc
      841 ggcgggagca atcgaatatc gttcgctgaa acgatcgagc acgcgagtca tgagatgaaa
      901 cgcgccgagc gaatgagtga agcgtgagtg ttcggcgccc tggtacgtgt atagaccaag
      961 tccgagctgc ttgatacgcc gcagacgttg gaattccgcc gcgtcgatca gccgcatcat
     1021 caggtcgcct tcgtctgagt cagtttgcaa ccggattatg ttgtggacgg gatcgcgata
     1081 gatgcgttct gtcattcggt cctaaatata taacagcggc ctccggaaac cagcgaagcc
     1141 ggttgaaatt tctggatttt cccatttttt tggatttagc ccgcgaaggc cggtgtgtcc
     1201 atttgctcca atcggtgaat ttttgcagga aaaaggactg ctggcacgcg ggcatggtaa
     1261 ttgccaaaaa cccgccggac gaggcctctt ttttaagccg ctcgtttagg aattcatttg
     1321 gtgctaccag caaataaggg gtgattcgac acaggagggg aggtagcacc gttgtctagt
     1381 tcaagaaagg aaagcagaaa atgaagaatg tttttaagtt tattggcctg tcggcgttgc
     1441 tgatgagctt cgcgctgttt gctggcagcg tgtttggcca aacaacgacg acagggtcaa
     1501 ttgaaggcac ggtgaccga
//
LOCUS       DASWTX010000717         2705 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_269126, whole genome shotgun sequence.
ACCESSION   DASWTX010000717 DASWTX010000000
VERSION     DASWTX010000717.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2705
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269126"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..963
                     /locus_tag="VGD38_10895"
     CDS             <1..963
                     /locus_tag="VGD38_10895"
                     /inference="COORDINATES: protein motif:HMM:NF013200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HEY0728568.1"
                     /translation="IEHKGGVANKSSFEAIAAAQALGAELQQKVSLVVLGADVSALAQ
                     DLAGYDVEKVICATNAKLADYTPDAYADGFEQIVKQVDPSFVFLTHTYQVRDFGPKLA
                     ARFKKGLISDCIRARVEGGKIGFTRRIFLGKLDADVISDGEAPVFATFQTGAYRPDQA
                     AKGSGAPVENVAVEIGDVRMKPEAPFQEAKQAVDLTKADVIVAVGRGIKSKENLALAE
                     KLAEVLGGDIAASRPICDAEWLPIDRQIGSSGQTVAPKLYVALGISGAIQHLVGMKNS
                     GTIVAINKDPEAPIFDIADYGIVGDLFEAVPVLTEEIKKIRGLA"
     gene            complement(947..1798)
                     /locus_tag="VGD38_10900"
     CDS             complement(947..1798)
                     /locus_tag="VGD38_10900"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEY0728569.1"
                     /translation="MKKFAYLILLIPLLLTLALGACGRNEKRYDLKGKVVMVEKEKRL
                     VTMAHEEVPGLMPAMTMPFTVPSQADLDFLAPDDQVSATLVVAGSQSWLENLFVSRIS
                     GAPTADAASMPAEAKPGDEVPNTTLRNQDGKEIRLHNYRGKALLLTFIYTRCPLPEYC
                     TLMSNNFAQIDRQLQQNPEVYARTHLLSVSIDPKYDTPQVLRSYGAAHTERYENETFA
                     HWEFASGDQVKELAQFFGLRYFDEKDQIIHGLKTVIVKPDGTVAKVYTGNDWKPEDVA
                     NELKRVL"
     gene            complement(1795..>2705)
                     /locus_tag="VGD38_10905"
     CDS             complement(1795..>2705)
                     /locus_tag="VGD38_10905"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEY0728570.1"
                     /translation="AAGNWEAARVAAQSALRLTNDQQRRSELLTILRSAYDTLAPYRL
                     PKFNQLSLTFGSGSNPLPQHDALADALLSLGVYDEGLPEFLATSAAKAPAVDLSYTLA
                     RLSLQAGLPNRAVRFAEPVWRNMPADYVIDLAPREMVELLYPVPFRESLLKHATSRNV
                     DPRFVLSIARQESRFQVEAKSVAAARGMMQFIPSTANEIAAQLNMKNFQQDDLYNADT
                     AILFGSQYLANLFKQFPDQPQAVAGAYNGGADNLERWIGRSRSTEADRYVPEIGFSQT
                     KDYVYKVLANFWTYQRLYNAQLEPAK"
BASE COUNT          542 a          741 c          845 g          577 t
ORIGIN      
        1 atcgaacaca aaggcggcgt cgcgaataaa agctcttttg aagcgattgc agcggcgcag
       61 gcgctcggcg cggagttgca gcaaaaggtc agcctcgtag tgcttggagc tgacgttagc
      121 gcgttggccc aggaccttgc gggctacgac gtggagaaag tgatttgcgc cacgaatgcg
      181 aagctcgcgg attacacgcc ggacgcttac gcagatggtt tcgaacagat cgtgaagcaa
      241 gtcgatccga gctttgtttt cctgacgcac acgtatcagg ttcgagactt cggtccgaag
      301 ctcgcggcta gattcaagaa gggtctcatc tctgactgca ttcgcgcgcg cgtcgaaggc
      361 ggcaagatcg gattcacgcg cagaatcttc ctcggcaagc tggacgcgga tgttatctcc
      421 gatggtgagg cgcccgtgtt tgcgactttc cagacgggtg cttacaggcc cgatcaagct
      481 gccaagggaa gcggcgcgcc tgtcgagaac gttgccgttg agattggcga cgtgcgcatg
      541 aagcctgaag cgccgttcca ggaagcaaag caggccgtgg atctcacgaa ggctgacgtc
      601 atcgtcgcgg ttggccgcgg gatcaagagc aaagagaacc tcgcgctggc tgagaagctt
      661 gccgaagtgc tcggcggtga catcgctgct tcacgtccga tctgcgacgc cgagtggctg
      721 ccgatcgatc gccagatcgg atcctcgggc cagacggtcg cgccgaagct ttacgtggcg
      781 ttgggaatct ccggcgcgat tcagcacctc gtcggcatga aaaactccgg caccatcgtg
      841 gcgatcaaca aagaccccga agcgcccatc ttcgacatcg cggactacgg catcgtcggc
      901 gacctgttcg aagccgtgcc ggtgctcacc gaagagatca agaaaatcag aggactcgct
      961 tgagttcgtt cgcgacgtcc tctggtttcc aatcgttgcc ggtgtaaacc ttcgcgactg
     1021 ttccatccgg ttttacaatc acggtcttta gcccgtgaat aatctggtcc ttctcgtcga
     1081 aatatctgag tccaaaaaac tgcgccagct ccttcacctg atcgcctgaa gcaaactccc
     1141 aatgcgcgaa cgtctcgttt tcgtagcgct cggtgtgcgc cgcgccgtag ctgcgcagga
     1201 cctgtggcgt gtcgtacttc ggatcgatgc tgacgctcag caggtgtgtg cgcgcgtaga
     1261 cctccgggtt ctgttgtagc tgtcgatcga tctgcgcgaa gttgttgctc atcagcgtgc
     1321 agtattcggg cagcgggcag cgcgtgtaga tgaacgtcag cagcagcgct ttgccgcggt
     1381 agttgtgcaa acggatctct ttgccgtcct ggttgcgcag cgtagtgttt ggcacttcat
     1441 cgcccggttt tgcttcggcg ggcattgagg ctgcgtccgc tgttggggcg ccactgattc
     1501 tcgacacgaa caggttttcc agccagcttt gcgaacccgc gacgacgagc gtcgccgaaa
     1561 cctgatcgtc gggcgcgaga aagtcgagat ccgcctggct cggcacggtg aacggcatcg
     1621 tcatcgccgg catcagtccc gggacttctt catgcgccat cgtcacgaga cgtttttcct
     1681 tctcgaccat cacgaccttg cctttcagat cgtaacgttt ctcattgcga ccacaggcgc
     1741 ccaaagcgag cgtcagcagg agagggatta agaggatcaa gtaagcaaat tttttcattt
     1801 cgccggctcg agttgcgcgt tgtagagacg ttgataagtc caaaagttgg ctagcacttt
     1861 atagacgtaa tctttcgttt gcgagaagcc gatttcgggc acgtaacgat cggcttcggt
     1921 tgaacgcgag cggccgatcc agcgctcgag gttgtcggcg ccgccgttgt aagcgcctgc
     1981 gactgcctgc ggctgatcgg gaaactgttt gaacaggttc gcgagatact gcgagccgaa
     2041 gaggatcgca gtgtcggcgt tgtagagatc gtcctgttga aagtttttca tgtttagttg
     2101 cgcggcgatc tcgttcgcgg tcgagggaat gaactgcatc attccgcgcg cggcggcgac
     2161 ggacttcgcc tcgacctgga aacgtgattc ctgacgcgcg atcgagagca caaaccgcgg
     2221 atcgacgttt cgactggtag cgtgtttgag cagcgactcg cgaaacggca cgggatagag
     2281 caactcgacc atttcgcgcg gagcgagatc gatcacgtaa tccgcgggca tgtttcgcca
     2341 cacgggctcg gcgaagcgta ccgcgcgatt cggcaggccg gcttgcaacg agagacgtgc
     2401 aagcgtgtag gacagatcga cggccggggc cttggcagcg ctggtcgcga gaaactcggg
     2461 caagccttcg tcgtaaacac cgagtgacag taacgcatcc gcaagcgcgt cgtgctgtgg
     2521 gaggggattg gagccacttc cgaaagtcaa ggatagttga ttgaacttcg gtaggcggta
     2581 aggcgctagc gtatcgtagg cggagcgcag gatcgttaat agctcggagc gtcgttgctg
     2641 gtcgttagtt agtcgtaagg cagactgagc cgcgacgcgc gcggcttccc aattgccggc
     2701 ggcgc
//
LOCUS       DASWTX010000718         4070 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_75656, whole genome shotgun sequence.
ACCESSION   DASWTX010000718 DASWTX010000000
VERSION     DASWTX010000718.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4070
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75656"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..729
                     /locus_tag="VGD38_10910"
     CDS             <1..729
                     /locus_tag="VGD38_10910"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY0728571.1"
                     /translation="FNFNESARGGRAYPIVGRISQSKSVEQVNAALANLARQNEQDFG
                     STNQEYAGRAIYVQPLTEYYLGPVRRALFILLGAVGLVLLIACANVANLLLARSMSRS
                     HEIAIRRAMGASRARIIRQLLVESTVLGLIGGGLGLLIAWWGTRLLFNVIPAGTIPAG
                     LDVAMNVQVLLFTLGVSLVTAFMFGLWPAIQGSRTQTREALQTASQRTTAGVGSRRAQ
                     SVLVVAEVGLSLVLLVPLVALRCE"
     gene            complement(1172..1471)
                     /locus_tag="VGD38_10915"
     CDS             complement(1172..1471)
                     /locus_tag="VGD38_10915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007182542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEY0728572.1"
                     /translation="MVTVGLLVRLEAKAGKEADVESFLKSGLALVQEEPDTTAWFAIR
                     MGPSTFGIFDAFPDDSGRQAHLTGRVAAALMAKASELLAQPPVIEKVDVLAAKLP"
     gene            1559..2518
                     /locus_tag="VGD38_10920"
     CDS             1559..2518
                     /locus_tag="VGD38_10920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728573.1"
                     /translation="MKDSGKLKDEVDGLFKLPLAEFIEARNALAKRLKQSGRVDDANL
                     VKTLVKPSVSAWAVNQLYWNHRVAFDRLLAAGQRFHKAQASGLSGKVADLRGSLDARR
                     EALLRRSELAESVLSEAGHSPSPDTIRRVTTTLEGISAHASVADGPTLGRLSQDVDPP
                     GFDLLASFVSGVGTTKRTPEPARASQKSNNVTAISQQKAARDAREREEKRKLEATRQV
                     RIAAAKLALQSAKKSLVNARTRAQSLEAAQKKANAEVKEAEKRKREAEERLKAANAAH
                     EQAVQRAQDVADEATDAAQAVEDARRSVDKETKELESLFSESL"
     gene            complement(2502..2891)
                     /locus_tag="VGD38_10925"
     CDS             complement(2502..2891)
                     /locus_tag="VGD38_10925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728574.1"
                     /translation="MAERINQVLLVLDRDYDGELASVPANTHVWLVDSPANRQAAANY
                     RALHGGSGVETGATTFKALDDDPASETWLKVLGDIELHHSEYSSDPPYSVLEVVGARL
                     SASVKRAIEALGFSKFERTEVGFRAIR"
     gene            3011..>4070
                     /locus_tag="VGD38_10930"
     CDS             3011..>4070
                     /locus_tag="VGD38_10930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728575.1"
                     /translation="MSNVRVLVGTRKGAFILTADGKRQNWDVSGPHFAGWEIYHMKGS
                     AVDPNRIYASQTSGWFGQIIQRSDDGGKTWFQPGTPAGEPTTTPDGMPKGESNKFVYD
                     TSEETGKPLTTHQFYDGTPHPWEFKRVWHLEPSLDSPDVVYAGVEDAALFRSTNGGQT
                     WEELSGLRGHGTGSEWQPGAGGMCLHTVLLDSANRDRIIIAISAAGAFRTDDGGANWK
                     PINKGLHSEYIPNPTAEVGHCVHHIAMHPAKSNLLFMQKHWDVLRSDDAGDSWHEVSG
                     NLPTDFGFVIDVHAHEPETIYVVPIKSDSEHYPPDGKLRVYRSRTGGNEWEALTNGLP
                     QANCYVNVLRDAMAVDSLD"
BASE COUNT          871 a         1187 c         1219 g          793 t
ORIGIN      
        1 tttaacttca acgagtcggc gcgaggcgga cgggcgtacc cgatcgtggg ccgcatcagc
       61 cagagcaagt ctgtcgagca ggtgaatgcc gcgctcgcaa atctcgcgcg gcaaaacgag
      121 caggactttg gcagtacaaa ccaggaatac gccggccgcg cgatctacgt ccaaccgctc
      181 accgaatact atcttggacc agtgcgcagg gcgttgttca tcttgctcgg cgctgttggt
      241 ttggtcctgc tgatcgcgtg cgccaacgtc gcgaacttac tcctcgcacg gtcgatgagc
      301 cgctcgcacg agatcgcgat ccggcgtgcg atgggcgcga gccgcgcgcg gatcattcgt
      361 caactgcttg tcgagagcac cgtgcttggt ttaatcggcg gcgggctcgg attgctgatc
      421 gcgtggtggg gaacacgttt gctgttcaac gtgattcccg cgggcacgat tcccgcaggc
      481 ctcgacgtcg cgatgaacgt gcaggtgcta ctcttcacgt taggcgtctc actcgtgact
      541 gcgttcatgt ttggtctctg gcccgcgatt cagggctcac gaacacaaac acgcgaggca
      601 ctgcaaaccg cgagtcaacg aacaaccgcc ggcgtcggtt cgcgacgcgc gcagagcgtg
      661 ctcgtagttg cggaagttgg gttgtcgctg gtcctgctcg tgccgttagt ggccctgcgc
      721 tgcgagtgaa ttagttctga gttcaagctt tcgcctgcgt cgcagccaac ctaaagattg
      781 aactggcatt gcgccaaaca ccctcttggt gtggctccgc cgccgacgtg aggcgaggct
      841 ctccgtactg cggctgcgcc gccggctgtg agatacaaga caaggctccg ccccgccggt
      901 cgcgctccgc cgtcgcttag caggggtgac ttcggtaccg gcctcgtagc ggctttgccg
      961 ccggatgtga ggcggggctc cgccccgccg cggagttaaa gagaagcaac cgggcatagc
     1021 caatttgtta ttccaaaacg cgaccggcgg ggcggagccc cgcctcacat ccggcggcaa
     1081 agccgcggca cagaggcgcc gtctcggttg aggtagacca agggtgaggg ggcggaagat
     1141 cttcatgttt aaatcatcga cccagacgag cttaaggcag cttcgctgcg agcacgtcca
     1201 ccttctctat cacgggtggt tgggccagta gttccgaagc ttttgccatc agtgccgctg
     1261 cgactcgccc ggtgagatgc gcttgtcggc cggagtcgtc gggaaaggcg tcgaagatgc
     1321 caaacgtcga tggtcccatg cggatggcga accatgctgt cgtgtccggt tcctcctgga
     1381 ccagcgccag gccgctcttg agaaaactct caacgtccgc ttctttacca gctttcgctt
     1441 cgagccgtac gagcaatcct acagtcacca tttgcttgcc tccttgcatc ttcgcgcctc
     1501 tgaattgccg atttatttca ctcggcgttt ttcgtgaaca gtgagaaact aacgcatcgt
     1561 gaaagacagc ggcaagctca aggatgaggt tgatggtctg ttcaaactcc cactcgcgga
     1621 gttcatcgag gcgcggaatg cgctcgcgaa gcggttgaag cagagcgggc gtgtggacga
     1681 cgcgaacctc gtgaagacac tcgtgaagcc ttcagtgtcg gcgtgggccg tcaatcaact
     1741 ttactggaac catcgcgtcg cgttcgatcg attgctcgcg gcaggtcaac gttttcacaa
     1801 ggcacaggct tccggtcttt ccggcaaggt cgccgatctg cgcggatcgc tcgacgcgcg
     1861 ccgtgaagcg ctcttgcgtc gttcagaact cgccgaatcc gtgttgagcg aggcggggca
     1921 cagcccgtcg ccggatacga ttcgccgcgt caccacaact ctcgagggaa tttcggcgca
     1981 tgcgtccgtg gccgatggtc caacactcgg aagactgagc caggatgtgg acccacccgg
     2041 ttttgactta ctcgcttcgt ttgtttccgg cgttggaaca acgaagcgaa cgccggaacc
     2101 agcgcgggct tcgcagaagt caaacaacgt caccgccatc tcgcagcaga aagccgcgcg
     2161 tgacgcgcgt gagcgtgaag agaaacgcaa gcttgaagcg acccgtcagg taagaatcgc
     2221 tgccgcgaaa ctcgcgcttc agtcggcaaa gaaatcgctt gtcaatgcgc gaactcgcgc
     2281 gcaaagtctg gaagcggcgc agaagaaagc aaacgcggaa gtaaaagaag ccgagaagcg
     2341 gaagcgtgaa gcagaggagc gcctcaaagc cgccaacgcc gctcacgaac aggcagtgca
     2401 acgagcacaa gacgtcgccg acgaagcaac tgacgctgct caagcagtgg aagacgcgcg
     2461 gcgcagcgtg gacaaagaaa ctaaagagct cgagtcattg tttagcgaat cgctctgaaa
     2521 ccaacttccg ttcgctcaaa cttgctgaag cccagagcct cgattgcgcg tttcactgaa
     2581 gcgctgagcc gcgctccgac gacttccaaa accgagtaag gcggatccga cgagtattcg
     2641 ctgtggtgca gctcgatatc gccaagcacc ttcagccagg tttcggaagc cggatcatcg
     2701 tccaacgcct tgaaggtggt ggcgccggtt tcaacacccg agccgccgtg aagcgcgcga
     2761 taatttgccg cggcctgccg gttcgccgga ctgtcgacaa gccaaacgtg cgtgttcgcg
     2821 ggaacgcttg cgagttcgcc gtcgtaatca cggtccagca ccagtaatac ctgattgatt
     2881 cgttcagcca tttttcgtta ggttatacaa caaaaattct aacctgaatg tcgatttcgc
     2941 ccgtcgtcgt tcgacttact gttaaaggag tcgaaatttg ctagcaactt tctaaagaag
     3001 gaacgaaaag atgagcaacg taagagtact cgtaggcacc cgcaagggag cattcattct
     3061 gactgcggat ggtaaacgcc aaaattggga cgtcagcggc cctcactttg ccggctggga
     3121 gatttaccac atgaaaggtt cggccgtgga tccgaaccgc atttacgcgt cgcaaaccag
     3181 cggctggttc ggtcagatca ttcaacgctc cgacgacggc ggcaagacgt ggtttcagcc
     3241 cggcacaccc gccggtgaac cgacgacgac gcccgatgga atgccgaagg gcgagagcaa
     3301 caagtttgtt tacgacacgt cggaagaaac cggcaaacca ctcacgacgc accagtttta
     3361 tgacggcacg ccgcacccgt gggagttcaa acgagtttgg cacctcgaac catcgcttga
     3421 tagtcccgac gtcgtctatg ccggcgttga agacgcggcg ctgtttcgtt cgaccaacgg
     3481 cggacagacg tgggaagagc tttccggtct gcgcggtcac ggcacgggtt ctgagtggca
     3541 accgggcgcc ggcggcatgt gcctgcacac cgtgctgtta gactcggcca atcgcgaccg
     3601 catcatcatc gcgatctccg cggcgggtgc gtttcgcacc gacgacggcg gcgcaaactg
     3661 gaagcccatt aataaaggac tgcactcgga atacattccg aatccgaccg ctgaagtggg
     3721 ccactgcgtt caccacatcg cgatgcatcc tgcaaagtca aacctgctgt tcatgcagaa
     3781 gcactgggac gtgttgcgca gcgacgacgc gggtgattcg tggcatgaag tcagcggaaa
     3841 cttgccgacc gatttcggtt tcgtgatcga cgttcacgca cacgagccgg aaacgatcta
     3901 cgtcgtaccg atcaagagcg acagcgaaca ctatccgccg gatggaaagt tgcgcgtcta
     3961 tcgcagccgc acgggcggca acgaatggga agcgctcacg aacggactgc cgcaggcgaa
     4021 ctgttacgtc aacgtgttgc gtgatgcgat ggcggttgat tcgcttgatt
//
LOCUS       DASWTX010000719         1656 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_247210, whole genome shotgun sequence.
ACCESSION   DASWTX010000719 DASWTX010000000
VERSION     DASWTX010000719.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1656
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247210"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..942)
                     /gene="hrcA"
                     /locus_tag="VGD38_10935"
     CDS             complement(<1..942)
                     /gene="hrcA"
                     /locus_tag="VGD38_10935"
                     /inference="COORDINATES: protein motif:HMM:TIGR00331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcriptional repressor HrcA"
                     /protein_id="HEY0728576.1"
                     /translation="MQATEKGVLDSRAEILLAALIKEHLVTGEAVGSRVLSDRFAHGY
                     GWSPATIRNVMGELEEAGFVDQPHTSAGRVPTDKGYRYYVDNMLGEARLSRSDLKAID
                     HLFSVNEFDPSSSPDRLMETASHVLSALSQNVGIVISPSLGENRLKHIDFVQLPDKRI
                     LVVLVSTASIVHNKVIRVSDEFSQDELDRTANYLNTEFSGKSLLSIRAEIVDLMKEEK
                     ALYDRLLQNAVLLCERSLEGEETSGGEVYVDGASNILTKPDFDDVERMRDLFRMFEEK
                     SRLIKILNECVHEHPYSGDVHVVIGREHPTDSMRSCAL"
     gene            1157..>1656
                     /locus_tag="VGD38_10940"
     CDS             1157..>1656
                     /locus_tag="VGD38_10940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728577.1"
                     /translation="MNEVTKYFADAFRHMGGNRGVPSIEVRFYPYAGLRHTIRLRSGR
                     VYVRLSDICKDASPEVLRALAWILVARLLGKKVPTIHDRVYRDYSLTPDVMRSSDLAR
                     RGRGRKMISTAQGEVYDLDRMFTKLNRRYFDGQIPKPTITWSQRRTRSILGHHDHIYD
                     SITISKT"
BASE COUNT          316 a          486 c          494 g          360 t
ORIGIN      
        1 cagggcgcaa ctccgcatcg agtctgtggg gtgctcgcgg ccgatgacta cgtgcacgtc
       61 gcccgagtac ggatgctcgt ggacacactc gttgagaatc ttgatcagcc gcgacttctc
      121 ttcaaacatg cggaacagat cgcgcatgcg ttcgacgtcg tcgaagtcgg gcttggtcag
      181 gatgtttgaa gcgccgtcga cgtaaacttc gccgccgctc gtctcttcgc cctcgagact
      241 ccgctcacag agcagcaccg cgttttgcag cagtcgatcg taaagcgcct tctcctcttt
      301 catcaggtcc acgatctcgg ccctgattga taacaggctc ttgccgctga attccgtgtt
      361 caggtagttg gcggtgcggt cgagctcgtc ctgagagaac tcgtcagaga cgcgaatgac
      421 cttgttgtga acgatgctgg cggtcgagac gagcaccacc aggatgcgct tgtccggcaa
      481 ttgcacgaag tcgatgtgct tcagccggtt ctcgccgagc gaaggtgaaa tgacgatgcc
      541 gacgttctgc gaaagcgccg agagaacgtg cgacgccgtt tccatcaggc ggtccggcga
      601 cgacgacgga tcgaattcgt taactgaaaa caggtgatcg atcgccttta gatcgcttcg
      661 cgacaggcgc gcctcgccga gcatgttgtc gacgtagtag cgatagcctt tgtcggtcgg
      721 cacgcggccc gcggacgtgt gcggctgatc gacaaagccg gcttcttcga gttcgcccat
      781 cacgtttctg atcgtcgcgg ggctccagcc gtagccgtgc gcgaagcgat cggacaacac
      841 gcgcgagccg acggcttcac cggtcaccag gtgctccttg atcagcgcgg cgagcaggat
      901 ctcggcgcgg gagtccagga cgcccttttc cgtggcttgc aagttggagg ctcgacgggg
      961 catagaatta gcgttttgca gtataaatgt tttgtccaga gattgcacag atcgggcgta
     1021 aacccctgta ttttagagac ttccggccgc cctcccgccg cgggttgacg gttctacttt
     1081 cccgtcctta agattgagcc ctccttttcg ggtccggcag tatgtgacag tgtctgggca
     1141 gttcggcagt actcacatga acgaagtaac taaatatttc gccgacgcgt ttcgtcatat
     1201 gggcggtaac cgaggcgtgc cttcgatcga agtgcgcttt tatccctacg ccgggctccg
     1261 acacacgatt cgtttgcgct cgggacgcgt ctatgtgcgt ctctcggaca tctgcaagga
     1321 tgcatcaccc gaggttctgc gtgcgctggc gtggattctc gtcgcgcggc tgctcggaaa
     1381 gaaggtgcca acgattcacg accgcgttta tcgcgactat tcgttgactc cggacgtgat
     1441 gcgctcgtcg gacctcgcgc ggcgcgggcg cgggcgcaag atgatctcga cggcacaggg
     1501 cgaggtttac gatctcgacc ggatgttcac caaattgaac cggcgttact tcgacggaca
     1561 gattccgaag ccgacgatca cctggtcgca acggcgcacg cgcagcattc tcggccatca
     1621 cgaccacatc tacgacagca tcacgatcag caagac
//
LOCUS       DASWTX010000720         2573 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_404526, whole genome shotgun sequence.
ACCESSION   DASWTX010000720 DASWTX010000000
VERSION     DASWTX010000720.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2573
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404526"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1101)
                     /locus_tag="VGD38_10945"
     CDS             complement(<1..1101)
                     /locus_tag="VGD38_10945"
                     /inference="COORDINATES: protein motif:HMM:NF014758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY0728578.1"
                     /translation="MSQQRLAPIGKPVSRVDGRLKVTGGARYAAEFKQQDVTHGVLVM
                     STIANGRIKSIDTKAAERAPGVLGVVTHLNAPKLNFPERTMGPNRVSDDGVAPWVGRS
                     LPVLQSDTIYFNAQPIGIVVAETLEQAEYAATLVQATYEERPPVTSLEAEVSRAFPPQ
                     EGAVKEPPLGRYADYTRGDPQAFSKAEVSVDETYTIPIEHHSPMELLSTIAQWTGNKL
                     TVHDKTQWVPNVQEHLAMVFNIPVADVHVISPFVGGAFGSSLRVWSHPVVAAMAARAV
                     RRPVKLVVTRKQMFTSHGHRPYTVQRVALGASKDGKLTAIVHEGYAQTSLYEENTEAL
                     LDASRILYASPNCTTKYRLVRGNIQTPLYMRAL"
     gene            complement(1098..2096)
                     /locus_tag="VGD38_10950"
     CDS             complement(1098..2096)
                     /locus_tag="VGD38_10950"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HEY0728579.1"
                     /translation="MKPFAFTRASNNQAAIQAVVRDQAARFIAGGTNLVDLMKEDVEQ
                     PNHLVDINRLALTRIEERNNGLRLGALARNSDTANHRLVRERFPLVSQAILSGASAQL
                     RNAATNGGNLMQRTRCYYFYDTAMPCNKRQPGSGCGALEGFNRMHAILGASTQCIAVH
                     PSDMCVALVALDAVVQVEGPQGARTIPFAEFHRLPGDTPQLDTNLKHGELITAIDLPA
                     AASSFAANSYYLKIRDRASYAFALVSVAVGLDIQNGTIRQARLALGGVAHKPWRAPEA
                     EAVLNGARANQETFRRAAAAALERAQGYKHNSFKIELGRRAIVRALTTAAGEGGTA"
     gene            complement(2093..>2573)
                     /locus_tag="VGD38_10955"
     CDS             complement(2093..>2573)
                     /locus_tag="VGD38_10955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017953226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEY0728580.1"
                     /translation="LDPRVSLLNLLREQLDLPGTKKGCDHGQCGACTVLVDGRRINSC
                     LALAVTYDGAEITTSEGLAKGDQLHPLQAAFIEHEGFQCGYCTSGQICSAFGMLQEVE
                     QGTVSHVTPDVRRQGRVELTDEEIRERMSGNICRCGAYPGIVSAIREVSGGAGRSSI"
BASE COUNT          516 a          860 c          689 g          508 t
ORIGIN      
        1 caaggcgcgc atgtaaagcg gcgtctgaat gttcccgcgc acgagccggt actttgtcgt
       61 gcagtttgga ctcgcgtaaa gaattcgcga cgcgtccaac agcgcttccg tgttctcttc
      121 gtaaagcgac gtctgcgcgt aaccctcatg cacgatcgcc gtcagcttcc catccttgct
      181 cgcacccaag gcaacacgct gcacggtgta cgggcgatgc ccgtgcgaag tgaacatctg
      241 cttgcgcgtc acgacaagct tcaccggccg ccgcaccgcg cgcgccgcca tggcagccac
      301 aaccggatgc gaccacaccc tcaacgacga tccaaacgcg ccaccaacaa acgggctaat
      361 cacatgcacg tcagccaccg gaatgttgaa aaccatcgcg aggtgttcct gaacattcgg
      421 aacccactgc gtcttgtcgt gaactgtgag cttgttcccg gtccattgag caatcgtcga
      481 gagcaactcc atcggactgt gatgttcgat cggaatcgtg taagtctcgt cgaccgaaac
      541 ctccgctttg ctgaacgcct gcggatcgcc gcgcgtgtag tccgcgtagc ggcccaacgg
      601 cggctctttg accgcgcctt cctgcggcgg aaacgcgcgg ctgacctccg cttccaaact
      661 cgtcaccggc gggcgttctt catacgtcgc ctgcaccagc gtcgccgcgt attccgcctg
      721 ctccaaagtc tccgccacaa caattccaat cggctgcgcg ttgaaataga tcgtgtcgct
      781 ctgaagcacc ggcaacgagc gtccaaccca cggcgctacg ccatcgtccg aaacgcgatt
      841 tggtcccatc gtgcgttccg gaaaattcaa cttcggcgcg ttcaggtgcg tgacgacgcc
      901 gagcacaccg ggcgcacgtt ccgccgcttt cgtatcgatc gacttgatgc gtccattcgc
      961 gatcgtgctc atcaccagca cgccgtgcgt cacgtcctgc tgtttgaact ccgccgcata
     1021 acgcgcgcca cccgtcacct tcaaacggcc gtcgacacga ctaactggtt taccgatcgg
     1081 cgctaatcgc tgttgactca tgcggttcct ccttcaccag cggccgtcgt cagcgcgcgc
     1141 acgatcgcgc gccggcccaa ttcgatcttg aaactgttgt gcttgtaacc ctgcgctctt
     1201 tcgagagctg ccgcagcagc acgccggaaa gtctcctgat tcgcacgcgc gccattcaac
     1261 acggcttccg cttccggtgc gcgccacggt ttatgggcca caccgccgag cgcgagacgc
     1321 gcttgcctga tcgttccatt ctgaatgtcg agccccacag ctaccgagac gagcgcgaac
     1381 gcatacgacg cgcggtcgcg aatcttcaag taataagaat tcgccgcaaa gctcgacgca
     1441 gcagcgggca agtcgatcgc cgtgatcagt tcgccgtgct tgaggttcgt atcgagttgc
     1501 ggcgtgtcac cgggcaaacg atgaaactcc gcaaacggaa tcgtcctcgc accctgcggc
     1561 ccttcaacct ggaccaccgc atcgagcgcc accagcgcaa cgcacatgtc cgacggatgc
     1621 acggcaatac actgcgtgct cgcgccgaga atcgcgtgca tgcgattgaa accctcgagc
     1681 gcaccacaac ccgaacccgg ctgccgtttg ttgcacggca tcgcagtgtc gtagaagtaa
     1741 taacaacgcg tgcgctgcat gagattgccg ccattcgtgg ccgcattccg cagttgcgcg
     1801 ctcgcgcccg aaagaatcgc ctgcgacacg agcggaaaac gttcgcgcac gagacgatga
     1861 tttgcggtgt cgctgttgcg agcgagcgcg ccgagacgca aaccattgtt tcgttcctcg
     1921 atgcgcgtca aagccaaacg attgatgtcc accagatgat taggctgttc gacgtcctct
     1981 ttcatgaggt cgacgagatt ggtcccgcct gcaatgaacc gtgcagcctg atcgcgcacc
     2041 acggcttgga tcgccgcctg gttgtttgaa gctcgtgtga aagcaaacgg tttcatatcg
     2101 aactccttcc tgccccaccg ctcacttcgc ggatggccga cacaatgccg gggtaagcac
     2161 cgcagcggca gatgttcccc gacatccgct cgcgtatctc ttcgtcagtc agctcaacgc
     2221 gtccctggcg gcgcacgtcc ggcgtcacgt gactcaccgt tccttgctcg acttcctgca
     2281 acattccgaa agcagaacag atctggcctg acgtgcagta accgcattga aaaccttcgt
     2341 gttcaatgaa cgccgcctgc aacggatgca actgatcgcc tttcgccaac ccctcgctcg
     2401 tcgtgatctc cgcgccgtcg taagtcactg ccagcgcgag acacgaattg atacgccggc
     2461 cgtcgacgag caccgtacac gcgccgcact ggccgtgatc gcagcctttt ttcgtcccgg
     2521 gaagatcgag ttgttcgcgc aggagattga gtaacgaaac acgcggatcg aga
//
LOCUS       DASWTX010000721         4494 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_8497, whole genome shotgun sequence.
ACCESSION   DASWTX010000721 DASWTX010000000
VERSION     DASWTX010000721.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4494)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4494)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4494
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8497"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            298..1584
                     /locus_tag="VGD38_10960"
     CDS             298..1584
                     /locus_tag="VGD38_10960"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0728581.1"
                     /translation="MCEQLPDDERREIGAQANQLLANSQQQATRERLQKCLDMIAEAH
                     SRHEAQREQEIHAQKMAALGELSFGVAHNVNNTLTGILGRAQLILRNSNDEAKIKSGL
                     ELIIKSAEDGAHIIRRIQDFARQRPSREFETISIAELLKDACEMTRPRWEARSEFAQI
                     RFALHADCQAYVKGDPVELREVLVNMIYNAIDAMPSGGEIRLATLENRERVVICVGDT
                     GTGMSSEVKQRLFDPFFTTKGKAGTGMGLAVSFGIIRRHEGSIEVDSEPGRGTTFKIS
                     LPKVVAETPDASGALPAAHGATAPDDKIRVLVVDDETHVREVLIEALEAEGCEVVSAQ
                     SGEIALALYEQYGGRFDAVFTDIGMPDMNGWELCTEIRERSKTIPLAIISGWADAISI
                     QTRNAVNADWVVAKPFDINKICAIAQEIAQRKLVTA"
     gene            complement(1946..>4494)
                     /locus_tag="VGD38_10965"
     CDS             complement(1946..>4494)
                     /locus_tag="VGD38_10965"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HEY0728582.1"
                     /translation="DYAQRALESFRQSGEWRGLAEAYFGVGVADIQEGNYEAGLENLE
                     QALKLIGDRPAAYMLGRTYANMAGACWFLKRPQEGIDYLKKAITYYERTDHKTNAADG
                     YNNLGINLILIGQWDRAQEALERAFALATEVDERGAKVPMILDSLGELHMLRGDLDQA
                     KDYLLRAVTLAHENGNKWYAAQALRTLARCYIAIEDPVSALTKAREALSLAEIIGDRQ
                     AICESRLIAAEAYLQTRELDECSRELQFVADQTTDSATDLGFTGEAHRLNGILNMMRN
                     DNAAAAQHFGSSVSIFDMLGDRYRAARAHLELGRAYATILPDRAGEHLSRALNTFREL
                     GARVDLSRAEEELRDLARSTPEKNQEQSALTQLLTLRLAEAVASRELLLRELAAVMRQ
                     ETGAQRVLIMEKGERNEPRVVISIGCTPADAVKIAVDLNDVYDDRDRERYCKKHDAEL
                     IFLKSSNAPPATLYLAPRNRSALPKGVALEPLLRVVELGMDVCALRAGAQKSGNQERS
                     DELAGTSLMPGFIHSSPAMTQLVEEVHKIRSSDVTVLVTGESGTGKELVARAIHAISS
                     RRAKVFVPFNCTAVPKELSEGYLFGYRRGAFTGAVSDSHGVIRTAAGGTLFLDEVGDL
                     PLDVQPKLLRFLQEGEIQPLGEQRPSKVDVRIIAATNTDLEEMVAQGRFREDLYYRLN
                     VIRLRVPPLRERRSEIPTIVNYYVNHYSAKFGRTDIQITPQAVDLLMVSDWPGNVRQL
                     CNEIQRTVARAEDGTIITPEHLSPELKRTSSPTTPSATAASIASLPSSTLQGPGGTLA
                     HALAEVERRMISDALRRHGGNISRAARELGLTRRGLYLKLERHELSAKAG"
BASE COUNT          949 a         1404 c         1306 g          835 t
ORIGIN      
        1 agtgatcttg cggatagcgt gggctgcgct caggttgatg aaacgttggc ccgcttgtac
       61 cttactagtg aagattacga ccgagcggaa cgtgcgatac agtttgcggt gcacacgcta
      121 gagggttgcg gggaagatgc gcttctggcc gaagctctca caacaaaagg cctcattctt
      181 tgtcgtttac gacatcgtca ggaggctaaa ccgatccttg agcgcgctag acgggtggcg
      241 gagcggtgtg gggataggga gggggccggg agggcgctgc tcatcttgat tgaggagatg
      301 tgtgaacagc tccccgatga tgagcgccgc gagatcggag cccaggccaa tcagttactc
      361 gccaactccc aacaacaagc cacccgcgaa cgcctccaga agtgcctcga catgatcgcc
      421 gaggctcata gccgccacga agcccaacgc gaacaggaaa ttcacgccca gaagatggcc
      481 gccctcggcg agctctcgtt cggcgtcgcc cataacgtca acaacacgct gacaggcatc
      541 ctgggccgcg cgcagttgat actccgtaac agtaacgacg aggcgaaaat caaatcaggc
      601 ctcgagctga tcatcaagag cgccgaagac ggcgcccaca tcatccgccg catccaggac
      661 ttcgcccgcc agcgccccag ccgcgaattc gagaccatct ccatcgccga actgctcaag
      721 gatgcctgcg aaatgacccg cccgcgctgg gaggcgcgct cggagtttgc ccagattcgc
      781 ttcgcgctac acgccgattg ccaggcgtac gtcaaaggcg atccggtcga actgcgcgaa
      841 gtgctggtca acatgatcta caacgccatc gacgccatgc cgtccggcgg cgagatccgc
      901 ctcgccacgc tggaaaaccg cgaacgcgtc gtcatttgcg ttggcgacac cggaaccggc
      961 atgagctccg aggtcaaaca acgactcttc gacccgttct tcaccaccaa aggcaaggcc
     1021 ggcacgggca tgggcctcgc cgtgagcttc ggtatcatcc gccgtcacga gggctccatc
     1081 gaggtcgaca gcgaacccgg ccgcggcacc accttcaaaa tttcactacc gaaagtcgtg
     1141 gccgaaacgc cggatgcctc cggcgcactg cccgcagcgc acggcgccac cgcccccgac
     1201 gacaagattc gcgtgctggt ggttgacgac gagacccacg tacgcgaggt gctgatcgaa
     1261 gcgctcgaag cggaaggctg cgaagtggtc tcggcgcaaa gcggggagat tgcgctggcg
     1321 ctttacgaac agtacggagg taggtttgac gccgtcttca ccgacatcgg catgcccgac
     1381 atgaacggct gggagctgtg cactgagatt cgcgagcgct cgaagacgat cccgctcgcc
     1441 attatcagcg gctgggccga cgcgatcagc atccagacca gaaacgccgt caacgccgat
     1501 tgggtcgtgg caaaaccgtt cgatatcaac aagatctgcg ccatcgctca ggaaattgcc
     1561 caacgaaaac tggtaaccgc ctaactggac cttgaaatca aggcaaaccg ttgaaacggt
     1621 ttcctggcgt gggcttgtct gttcacccgg ctaaagccgg gtgagaatga aatgacgtca
     1681 aacccaaatt cccaagcctt tccgggcgca acagttgagg ttgaagcgtt gacgctgtaa
     1741 ctggcttggg ctgggcgact cacccggcta aagagccgag attgagacag gtcaacccaa
     1801 actcccaagc ctttccggcg cgacagttga ggttgaggct gtagctggct ttggctgggc
     1861 gactcacccg gctaaagcgg cgagattgag acaggtcaac ccaatgtaag gcttcccgcg
     1921 tgtacaaagt tgaaacttgg aacggttaac cagctttggc gctgagttcg tggcgctcaa
     1981 gtttgaggta gaggccgcgg cgggtgagac ccagttcgcg ggcggcgcgg gagatgttcc
     2041 cgccgtgacg gcgcaaggcg tccgagatca tgcggcgctc gacttccgcc aaggcgtgag
     2101 ccagcgtccc gcccggacct tgcagtgttg aagaaggcaa cgaagcgata gaagcagccg
     2161 ttgccgacgg agtcgtgggc gaagatgttc gtttcagctc cggcgacagg tgttcgggcg
     2221 tgattatcgt cccatcctca gcgcgcgcga ccgtgcgctg aatctcgtta caaagctgac
     2281 gcacgttgcc gggccagtcg ctcaccatca gcaggtccac ggcctgcggc gtgatctgaa
     2341 tgtctgtgcg cccaaacttc gccgagtagt ggttgacgta gtagttgacg atcgtcggta
     2401 tctcggaccg gcgctcgcgc agcggcggca cccgcaaccg gatcacgttg agacggtaat
     2461 agaggtcctc acgaaaacgt ccctgcgcca ccatttcctc gagatccgtg ttcgtcgccg
     2521 cgatgatacg cacgtcgact ttgctcggcc gttgttcgcc cagcggctga atctcgcctt
     2581 cctgcaggaa tcgaagcagc ttgggctgga cgtcgagcgg caggtcgccg acttcatcga
     2641 gaaacaacgt accaccagcc gcggttcgaa tgacaccgtg cgagtctgaa accgcgcccg
     2701 tgaaagcccc gcgccggtaa ccaaacaggt aaccttccga cagctccttc ggcaccgcgg
     2761 tacagttgaa cggaacgaaa accttcgccc gccgcgacga gatcgcgtga atcgcacgcg
     2821 ccaccagttc cttgcccgtg cccgactcgc ccgtgaccag caccgtcaca tccgacgaac
     2881 gaatcttgtg aacttcctcg accaactgcg tcatcgccgg actggaatga atgaacccgg
     2941 gcatcaaact cgtgccggcc agttcatcgg aacgctcctg gttgccactc ttctgcgcgc
     3001 cagcccgcag cgcacaaaca tccatcccca gctcaaccac gcgcaacaac ggttcgagcg
     3061 cgacaccttt cggcagcgcg gaacgattcc gcggcgccaa ataaagcgtc gccggaggcg
     3121 cgttggacga tttgaggaag atcagttccg catcgtgctt cttgcagtaa cgttcgcgat
     3181 cgcggtcgtc gtaaacgtcg ttcaaatcca cggcgatctt aacggcgtca gccggcgtgc
     3241 acccgatcga gataacgacg cgcggttcgt tgcgctcgcc cttttccatg atgagcacac
     3301 gctgcgcgcc agtctcctgc cgcatcaccg cggcaagttc acgcagcaac agctcgcgcg
     3361 atgcaaccgc ttccgccaaa cgcagcgtca agagttgcgt cagcgccgat tgctcctgat
     3421 tcttttccgg agtcgaacgc gcgagatcgc gcagctcttc ttccgcccgc gacaaatcaa
     3481 cacgcgcgcc gagttctctg aacgtattca acgcccggct cagatgttcg ccggcacgat
     3541 caggcaggat cgtcgcgtaa gcccgcccaa gctcgagatg cgcgcgcgca gcacgataac
     3601 gatctccgag catgtcgaaa atggaaacgc tgctgccgaa atgctgtgcg gccgcggcgt
     3661 tatcgttgcg catcatgttc agaatgccgt tgaggcggtg cgcctcgccg gtgaaaccga
     3721 gatcggtcgc ggagtcagtc gtttgatcgg caacaaactg aagctcgcgc gagcattcgt
     3781 cgagttcacg tgtttgcagg taggcttcag ccgcgatcaa acgcgactca cagatcgcct
     3841 ggcggtcgcc gatgatttca gcgagcgaca aagcctcgcg cgcctttgtc aacgcactca
     3901 ccggatcctc gatcgcgatg taacaacgcg ccagtgttcg cagcgcctgt gctgcatacc
     3961 acttgttgcc gttttcgtga gctaaagtca ccgcgcgaag gagatagtct tttgcctggt
     4021 ccagatcgcc acgcagcatg tggagttcgc caagcgaatc cagaatcatc ggcaccttag
     4081 cgccgcgctc gtcgacttcc gttgcgagcg caaaggcgcg ttcgagtgct tcctgcgcgc
     4141 gatcccattg cccgatcaga atcagattga taccgagatt gttgtaaccg tcggcggcgt
     4201 tcgtcttgtg atcggtgcgc tcgtaatacg tgatcgcctt cttgaggtaa tcgatgcctt
     4261 cctgcggacg tttcaggaac cagcacgcgc cagccatgtt cgcgtacgtg cggccaagca
     4321 tgtacgcagc cggacgatcg ccaatcaatt tcaacgcctg ttcgaggttt tcgaggcccg
     4381 cctcgtagtt gccttcctga atatcggcga cgccgactcc gaagtacgct tcagcaagtc
     4441 cacgccattc gccgctttga cgaaaactct ccaacgcccg ctgtgcgtag tcgc
//
LOCUS       DASWTX010000722         3172 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_420901, whole genome shotgun sequence.
ACCESSION   DASWTX010000722 DASWTX010000000
VERSION     DASWTX010000722.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_420901"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1485)
                     /locus_tag="VGD38_10970"
     CDS             complement(<1..1485)
                     /locus_tag="VGD38_10970"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEY0728583.1"
                     /translation="MTQRRMYPRRKLPQLIVLVLYLALIPSTGPYATRAQRTTAPQKR
                     PKLVLLIVVDQFRYDYLERFGDLFGPNGLRRLLRDGASWTQANYDHFPTYTAPGHGTM
                     MTGASPSETGIVGNDWIDRPSGKRITSVTDENVKLLGSGDPREVAASPHRLLSSTVGD
                     ELRLLTNDRSKVIGISAKDRSAILPAGRHANAAYWLSNTGTMASSTYYFDQLPAWVTA
                     FNNTKPSDKYFGAKWERLLPESEYLKHAGPDVQPWEKVVAAGDTNAFPHTITGGAKEP
                     NSAYYFALDHSPFSNDVLVSFAQEAIVNEKLGQDDDPDVLTVSFSASDYVGHRYGPYS
                     HEAMDITLRVDRQIATLLDFIQARVGLSNTLIAFTADHGVSPIPEHAAALGLGGGRLK
                     TPDIFATIRTAISARYNPQGKSPDPSADYILKYNNWGVVTDAFINGNVYFNYEALKRD
                     NVDLEEISKVVAAAALTIPGVARSFTRAQLLRGETSITDPIERRV"
     gene            complement(1543..2766)
                     /locus_tag="VGD38_10975"
     CDS             complement(1543..2766)
                     /locus_tag="VGD38_10975"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0728584.1"
                     /translation="MTLLMIIRVAFRALVRNKMRAALTMLGIIIGVSAVIAMVSIGQG
                     ASASVQAQIESIGTNLLFVSAGAQNVGGVRSGTGDTGTNTLTVEDLEAIRREVPSVSM
                     VTPAINARSQLIAGNMNWNTSVQGVSEQYPDIRKWPVQSGTFFTDSDVRSAARVIVIG
                     QTIADNMFPGMDAVGQTLRVQNLPFRVVGVMARKGQDQGGRDQDDIAFAPYTTVQKKV
                     LGNTRVQIAYVSAITEDATYTAQSQIGELLRQRHKLTASEPDDFTVRNMTDVAEAANE
                     TSKTMTILLACIAGVSLLVGGIGIMNIMLVSVTERTREIGIRMAIGARSSAVRSQFLI
                     ESIVLSLTGGTIGILLGIGLSLAIPAMLGWPTLVSMMAIVGSVVFSVAVGVFFGYYPA
                     RKAASLDPIEALRYE"
     gene            complement(2770..>3172)
                     /locus_tag="VGD38_10980"
     CDS             complement(2770..>3172)
                     /locus_tag="VGD38_10980"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY0728585.1"
                     /translation="TRHQRAMEALAAVGLSGREQNHPNQLSGGQQQRVAVARSLVNNP
                     ALILADEPTGNLDSRTSVEVMEIFQRLNRERGITLVLVTHEPDIAQYAQRVVVFKDGK
                     IKSDYPVTDQRDAAEELKNMPLITDDDEDDE"
BASE COUNT          582 a          931 c          968 g          691 t
ORIGIN      
        1 cacgcgccgt tcgatcggat ctgtgatcga tgtttcaccg cgcaggagtt gcgcccgcgt
       61 gaacgaacgt gcgacgccgg gaattgtcag cgccgcagcg gcgacgactt ttgagatctc
      121 ttcgagatcg acgttgtcgc gtttgagtgc ttcgtagttg aaatagacgt tgccgttgat
      181 gaacgcgtcg gtcaccactc cccaattgtt gtatttcagg atgtaatcgg cgctcgggtc
      241 cggcgacttg ccttgcgggt tgtaacgcgc gctgatcgca gtgcggatcg tcgcgaatat
      301 gtcgggtgtt tttagtcgcc cgccgccgag accgagtgcg gcggcgtgtt ccgggatcgg
      361 cgagacgccg tgatccgccg tgaacgcgat cagtgtgttc gacaatccga ctcgcgcttg
      421 tatgaagtcg agtagtgtcg cgatctggcg atcgacgcgc agcgttatgt ccatcgcttc
      481 atggctgtat ggtccatagc gatggccgac gtaatcgctg gcggagaaac tgacggtgag
      541 cacgtccgga tcgtcgtcct ggccgagttt ctcgttgacg attgcttcct gtgcgaatga
      601 aaccagcaca tcgttgctga atggcgaatg gtccagagcg aagtagtagg ccgaattggg
      661 ttccttcgcg ccgccggtga tcgtgtgggg aaaggcgttt gtatcgccag cggcgacgac
      721 cttttcccat ggctgcacgt cggggccggc gtgtttcagg tattcgcttt ccggaagcag
      781 gcgttcccat tttgcgccga agtacttgtc ggatggtttg gtgttgttga aggcggtgac
      841 ccaggccggc agttgatcga aatagtacgt ggaagacgcc atcgtgccgg tgttgctcaa
      901 ccagtaagcg gcgttcgcat gacggccggc gggcaggatc gccgagcgat cttttgcaga
      961 gatgccgatc actttcgagc gatcgttcgt gaggagccgt agttcgtcgc cgaccgtgga
     1021 gctcaggagt cggtgcggac tggctgcgac ttccctggga tcgccgctgc cgagcagttt
     1081 tacgttctcg tccgtgacgc tcgtgatgcg ctttccgctg gggcgatcga tccagtcgtt
     1141 gccgacgata cctgtttcag atggagacgc gccggtcatc atcgtgccgt gaccgggtgc
     1201 ggtgtaagtt ggaaagtgat cgtagttcgc ctgtgtccac gacgcgccgt cgcgcagcaa
     1261 acgtcgcaat ccgtttggcc cgaacagatc gccgaagcgc tcgaggtagt cgtagcgaaa
     1321 ctggtccacc acgatcagca gcaccagctt cggacgtttt tgcggcgctg ttgtgcgttg
     1381 agcgcgtgta gcgtacggcc cagtggaagg gattaaagca agataaagga caagaacgat
     1441 caactgcggc aacttgcggc gtggatacat gcggcgctga gtcatgcgcc gcatgttaac
     1501 cgaccgagag tctacgcgta tagaagttaa cgcggaatta atttactcgt agcgtagcgc
     1561 ttcgatgggg tcgagcgacg cggctttgcg cgccgggtag taaccgaaga agaccccgac
     1621 cgcgaccgag aagaccactg agccgacgat ggccatcatc gagaccagcg tgggccaacc
     1681 gagcatcgcc ggtatcgcga gcgatagacc gatgccgagc agaatgccga tcgttccacc
     1741 agtcagactc aacacgatcg actcgatcaa aaactgacta cgcaccgccg acgagcgcgc
     1801 gccgatggcc atgcgaatgc cgatctcgcg ggtacgttcc gttaccgaca cgagcatgat
     1861 gttcatgatg ccgatgccgc cgacgagcag cgacacgccc gcgatacacg cgagcaggat
     1921 cgtcatcgtc ttactggttt cgttcgcggc ttccgcgacg tcagtcatgt tgcgcaccgt
     1981 gaaatcgtcc ggttcgctcg cggttagttt gtgccgctgc cgcagcagtt cgccgatctg
     2041 cgattgcgcc gtgtaggttg cgtcttcagt gatcgcggaa acatacgcga tctgaacgcg
     2101 cgtgttgccg agcactttct tttgcacagt cgtgtacggc gcgaaagcga tgtcgtcctg
     2161 atcgcggccg ccctggtcct gtcccttgcg agccatcacg ccgacaacgc gaaacggcag
     2221 gttttgcacg cgcagcgtct gtcccaccgc atccattccc ggaaacatgt tgtcggcaat
     2281 agtctgaccg atcacgatca cacgcgccgc gctgcgaacg tcgctgtcag taaaaaacgt
     2341 tccgctctgc acgggccact tgcggatgtc cggatactgc tcgctcacgc cctgcacgga
     2401 cgtgttccag ttcatgttgc ccgcgatcag ttgcgaccgc gcgttgatcg ccggagtcac
     2461 catcgaaaca ctcggcactt cgcgcctgat cgcttcgaga tcttcaaccg tcaacgtgtt
     2521 cgttccggtg tcgcccgtgc cgctgcgaac gccgccgacg ttctgcgcgc ccgcgctcac
     2581 gaacagcagg ttggtgccga tgctttcgat ctgcgcctgc acggacgccg acgcgccctg
     2641 accgatactc accatcgcga tcacggccga gacgccgatg atgatgccga gcatcgtcaa
     2701 cgcagcgcgc atcttgtttc tcacaagcgc gcggaaagca acacggataa tcattaagag
     2761 tgtcatcgtc tactcgtcgt cttcgtcgtc gtccgttatc agcggcatgt ttttcagttc
     2821 ttccgccgcg tcgcgctggt ccgtcaccgg ataatcgctc ttgatcttgc cgtctttgaa
     2881 cacgaccacg cgctgcgcgt actgcgcgat gtcgggttcg tgcgtaacaa gcacgagcgt
     2941 gatgccgcgt tcgcggttca ggcgttgaaa gatttccatc acttcaactg acgtgcgcga
     3001 gtcgaggtta ccggtcggct cgtcagccag gatcaacgcc ggattgttca ccagcgaacg
     3061 cgcaaccgcg acacgctgtt gctgaccacc tgacaactgg ttcgggtggt tctgttcgcg
     3121 gccgctgagt ccgactgccg ccaacgcttc catcgcgcgc tggtgccgcg tc
//
LOCUS       DASWTX010000723         2125 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_32906, whole genome shotgun sequence.
ACCESSION   DASWTX010000723 DASWTX010000000
VERSION     DASWTX010000723.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32906"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..316
                     /locus_tag="VGD38_10985"
     CDS             <1..316
                     /locus_tag="VGD38_10985"
                     /inference="COORDINATES: protein motif:HMM:NF019121.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728586.1"
                     /translation="STGNVSFVVPAPLTKAMTLRIQRMAIRAFQSIDGSGLARVDFFL
                     PRDGGALIINELNTMPGLTEVSGYPKMWQASGLPFAQLLETLIDLAFERHRDKSLTKT
                     SR"
     gene            complement(318..1223)
                     /locus_tag="VGD38_10990"
     CDS             complement(318..1223)
                     /locus_tag="VGD38_10990"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0728587.1"
                     /translation="MRIRLPFLLAFLQVIALATLSQDQDDDVIRTSTDNVVLNITVTD
                     KNGQYVKGLKASDFKVYEDGVEVKPEAVASFSLQESPYAAVVLLDSSGSMEARFTLAR
                     SAAIRFLDGLRPEDVAAVYRFDSKVERVQEFSGGRDLAPMAYAIRAKGMTSLNDAIVE
                     ASRTLAERTEHRKAIVILSDGMDTFSKASSDKAVESALAIGASIFAVDMSDLQMGGSA
                     ARQGAPQLKSFAEKTGGRFVATPGGQALRDAFAGIAEELGPQYTLAYRPLNKARDGKW
                     RKLEVKLNREDLTVRTRKGYRAPKK"
     gene            complement(1230..1811)
                     /locus_tag="VGD38_10995"
     CDS             complement(1230..1811)
                     /locus_tag="VGD38_10995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728588.1"
                     /translation="MKTTKPKDVYACARFILLGCALLFVSANTVAAQFDQETTPRPPR
                     PDSPTRDRDQSPLGNFEEEIRAKRAIKMAEKDHEENLSRAKEIGDLAKYLQTSLKDKT
                     TIDRESMKKIERLEKLTKKIRNEAGGEDEEVKIIDRPADITGAVNQIAESAESLSKAV
                     QNTPRQVVSASVIGNANVLLELIKLLRAFDPRP"
BASE COUNT          399 a          586 c          613 g          527 t
ORIGIN      
        1 gagcacgggc aacgtcagtt ttgttgttcc cgcgccgctg acaaaagcga tgactttgcg
       61 cattcaacga atggcaattc gcgcgtttca gtcgattgac ggtagtggac tggcacgcgt
      121 ggatttcttt ctgccgcgcg acggcggcgc actgatcatc aacgagttga atacaatgcc
      181 gggactgact gaggtgtccg gttatccgaa gatgtggcag gcttcaggtc tgccgtttgc
      241 gcagttgctc gagacgctga tcgatctcgc tttcgagcgg catcgcgata agtcgcttac
      301 caaaaccagc cggtaattta tttcttcggc gcgcgataac ctttgcgcgt gcgcaccgtg
      361 agatcctcac gattcagttt cacttccagt ttgcgccact tgccgtcgcg agctttgttt
      421 agcggccggt aggcgagcgt gtattgaggg cccaactctt cagcaatgcc ggcgaatgcg
      481 tcgcgcaagg cttgtccacc gggcgtggcc acgaaccggc cgcccgtctt ctctgcaaaa
      541 ctctttaact gcggcgcgcc ctgacgtgcg gctgaaccac ccatttgcaa gtcagacatg
      601 tcgacagcga agatgctggc gccgatcgct agtgcgctct cgactgcttt gtcgctcgag
      661 gctttgctga acgtgtccat gccgtcggaa aggatcacga ttgctttgcg atgttcggtt
      721 cgttcggcga gtgtgcgcga ggcttcaacg atcgcgtcgt tcaggctcgt cattcctttc
      781 gcacgaatgg cgtaggccat cggtgcgaga tctctgccgc ccgagaactc ctgcacgcgt
      841 tccacctttg aatcgaaacg ataaaccgcc gcgacgtctt ccgggcgcaa gccgtcgaga
      901 aacctgatcg ctgccgaacg cgcgagagtg aagcgtgctt ccatgctgcc ggaactatcg
      961 agcagcacga ccgcggcata aggtgattct tgaagtgaga agctcgcgac ggcttcgggt
     1021 tttacttcaa ccccatcctc atacacttta aagtcggaag ctttgagacc tttgacgtac
     1081 tggccgttct tgtccgtgac cgtgatgttg agcacgacgt tgtcggtgct cgtgcggatc
     1141 acatcgtcat cctgatcttg tgagagcgtg gcaagggcga tgacctgaag gaacgcgagc
     1201 aggaagggta aacggatgcg catttgtgat tagggtcggg gatcgaaagc acgcagcagc
     1261 ttgatcagct caagtaaaac gttagcgttg ccgatcaccg aagccgaaac aacctgacgc
     1321 ggcgtgttct gcacggcttt ggataacgac tcagcgcttt cggcgatctg gtttacggcg
     1381 ccggtgatgt cagccgggcg atcgatgatt tttacttcct cgtcctcgcc gccggcttcg
     1441 ttgcgaatct tcttcgtcaa cttttcgagc cgctcgatct tcttcatcga ctcgcgatcg
     1501 atcgtggtct tgtctttcag gcttgtttgc aaatacttgg cgagatcgcc gatctctttt
     1561 gcgcggctaa ggttttcctc gtggtccttc tcagccatct tgatcgcgcg ttttgcgcga
     1621 atttcttctt cgaagttgcc gagtggagat tgatctcgat cgcgagtggg gctgtccgga
     1681 cgcggcgggc gcggtgttgt ttcctggtcg aattgcgccg ctacggtgtt tgcgctgaca
     1741 aagagaaggg cacagccgag aaggatgaag cgcgcgcagg cgtatacgtc ttttggcttt
     1801 gtcgtcttca ttcgttttcg tgctgaccct tgaggctcga gctgaatgct aacgcaccat
     1861 ctaaattctc tcaaccactc tgacgacacg cacgccacct tcgttgcacg cccgcgctga
     1921 gacttcacct taaccatcgg cacgccgacc cttaaacaga aacgtgagcc acagatcaca
     1981 cggacttaca cagattaaag aattggttta aggaacgcgg ccggggttgt ctggggtgtt
     2041 gatgaagtcg ccgggtttgg ttgtgcgctt gccgacgacg acctgcggtt gcagtcgctc
     2101 cggttggcgc ttcttgcctt gtgac
//
LOCUS       DASWTX010000724         5417 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_269207, whole genome shotgun sequence.
ACCESSION   DASWTX010000724 DASWTX010000000
VERSION     DASWTX010000724.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5417
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269207"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..812)
                     /locus_tag="VGD38_11000"
     CDS             complement(<1..812)
                     /locus_tag="VGD38_11000"
                     /inference="COORDINATES: protein motif:HMM:NF012640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HEY0728589.1"
                     /translation="MTKVVFGPSERAPGGWRLAFDEPRETRVAERVEEVLPLLAFAEE
                     RAQAGAYVALMIAYEAAAAFDSALTTHEKGEFPLVWVGVFDGAAEFPEAAGGSFASEG
                     WKPRIDKAEYDDAVGMICEFIAAGDTYQVNYSFPLTSTFSGDAYAWYRELCVAQGAPY
                     SVYLELGRYQVLCLSPELFFAREGDHVVTKPMKGTKTRGRWLEEDLEHAAWLRESRKD
                     RAENVMIVDLLRNDLGKVSVPGSVRVSSLFDVERFETVWQMTSTVESTLRPGT"
     gene            870..1244
                     /locus_tag="VGD38_11005"
     CDS             870..1244
                     /locus_tag="VGD38_11005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728590.1"
                     /translation="MSDLPGLRTCPVCEKEPRGHRYARLASIIDNPNDQSRADKFLKD
                     IASRRWSEVLPINEWQGGADMFELYALRCPTSRLALIVVRSPFELFDDDHIAAIETLT
                     TDESSTLAALIGLHGIKSRFDL"
     gene            1411..5151
                     /locus_tag="VGD38_11010"
     CDS             1411..5151
                     /locus_tag="VGD38_11010"
                     /inference="COORDINATES: protein motif:HMM:NF028519.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY0728591.1"
                     /translation="MRKPLFAFLLLTFCLIAVAKGQGTTSRVTGTVHDANGAAIAGAT
                     VTLTNEATAVSFTAQTSDSGTYSFDLVQVGKYTVAIEKQGFKKFVSQGNPVNVNQPAT
                     VNATMETGVVQETVLVSAAAEQVQLSTSGNLGTTIEQQTLESLPIVGTRGRNPLDLLN
                     FQPGVVFGGNTGGAVNVNGSRDRAFNFTLDGIDINESTAGGSNFTPLRPNPDSVQEFQ
                     VVTSNFTAELGRSSGAQVTLVTKSGSNEFHGNLFEYYRTPALDARSYPVTIAGAAKDQ
                     FVQHIFGGSLGGPLFNPGFGEGNRAGWLRDKAFFFVNLQFLRAYDTALVTRTVYTQAA
                     RQGLFRYVVGRANAPAGTATPAVNGNGAPVLPACNGTPPTNSPCIASYNIATNPTGVG
                     LDPTLSQLINNMPLPNNFTTGDGLNTAGFNFASPQREKQYDFVSKFDFTINDKSLIYV
                     RYAQGSQSTFGDSANGGRPVFPDAPNFVDTSRTPKNLAINWRWSPTATFTNEAIFGIS
                     KFFFTFATPNPDQNLPFSFINVATPNTNFSYNARGVRTFQFIDNATLIRGSHTLKGGI
                     NFRFNRHRDDRSNVAGSAIEPVVTLSGVAGFTGFNLPASGATSINANDLTRLQNTIVD
                     QLGRVNTVSQAFVLDPSNPSGFAPAGTRWLNEANYTELDFYFQDNWRARSNLVFDLGL
                     RWEAKLTPSVNGRPILVPNQSVKLGATPSNTLKWVEGDLFESDFGKFMPSVGFAWDPF
                     KSGKTSVRGNYRLASDRIATFLFGSFIFQSTPGNNTAATNSNFGAGGGLFRNIGPVIA
                     GLAPASTPDALRQPAQFSTASTSVIDPDLQFPQVHEWSFSFQREIGQNVVEVNYIGKH
                     AVHLLGGYNVNQVNIFAGVPGLSEANFLDAFNKIRASSSYNSPLINLLMSGNAANNGG
                     TARFRALNTTNITQGSVAAAALVVSQKTCVAADVTAGICSNANLNRRLLDVNGFPFLL
                     QPFPQFTGGLNVFDSNDYSNYGALQMIFKRRINAGLGFQFAYTLSKSKDNRSWDPSLS
                     GVSTGSVQAASSTPFDLRDRNLNYTYSDFDRRHVFQGTYVYELPFGKGRKFGGDLPSV
                     VDYIVGGWQMAGTVLWASGRPFTVYSGINTVSNVVQSTADCNGCTRNSGRLVLESGRN
                     FWFDTSTRSQFSAPAPGSIGNTGRNFFLAPNYFQWDSSLSKKFKLGERVSFDIRLDAR
                     NVLNNPSFDNPTAVITSTIFGRINDSVTNNARRIQLSGKLSF"
     gene            complement(5211..>5417)
                     /locus_tag="VGD38_11015"
     CDS             complement(5211..>5417)
                     /locus_tag="VGD38_11015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728592.1"
                     /translation="IQFRTEMFNAFNHTNFDNPRDASTGSPSIRSSVFASACCAAVAP
                     PSTQTIVQTGEAARVIQFALKVQF"
BASE COUNT         1167 a         1735 c         1413 g         1102 t
ORIGIN      
        1 gttcccggcc gcaaggtcga ttcgactgtc gacgtcatct gccaaaccgt ttcgaatcgt
       61 tcgacgtcga acagcgaaga cacgcgcacg cttcccggca ctgaaacctt tccgagatcg
      121 tttcgcagca ggtccacgat catcacgttc tcggcgcgat cctttcgcga ctcgcgcaac
      181 cacgccgcgt gctcgagatc ttcctcaagc cagcgcccgc gagtctttgt gcccttcatc
      241 ggttttgtga cgacgtgatc accctcgcgc gcaaaaaaga gctccggcga caagcagagc
      301 acctggtaac ggcccagctc gagataaacg gaatatggcg caccctgcgc gacgcacagt
      361 tcgcgatacc acgcgtaagc atcaccgctg aaagtggaag ttaacggaaa cgagtagttg
      421 acctggtaag tgtcgcccgc cgcgataaac tcgcaaatca ttcctaccgc gtcatcgtat
      481 tcggctttat caatcctggg tttccatccc tccgaagcaa aacttccacc cgcggcctcc
      541 ggaaactcag ccgcgccatc aaacacaccc acccacacaa gcggaaactc gcccttctcg
      601 tgcgtggtca acgcagaatc aaacgcagcc gccgcctcat acgcgatcat cagcgccaca
      661 tacgcccccg cctgcgcacg ctcctcagcg aacgcgagca acggcaacac ctcctccacc
      721 cgctccgcga cacgcgtctc ccgcggctca tcgaacgcga gccgccaccc cccgggcgca
      781 cgttcgcttg gaccaaatac tactttcgtc atcggtgcgc gcagtctatc atgttcgccg
      841 gatgctccat cacgtcggaa gagttcaaga tgtctgatct accgggtcta cggacctgtc
      901 ccgtttgcga gaaagaaccg cgtggccaca ggtacgctcg tttggcttcg atcattgata
      961 acccgaacga ccagtctcgc gcggataagt tcctgaagga cattgctagc aggcgctggt
     1021 cagaagtcct cccgatcaac gagtggcagg gtggcgccga tatgttcgag ctttacgcgc
     1081 tccgatgtcc cacctctcga ctggcgctaa tcgttgtacg ctcgccgttt gaactgttcg
     1141 acgacgatca catcgcggcg attgagactc tgactaccga cgaaagttcg actctcgccg
     1201 ccctcatcgg tctacacggg atcaaaagcc gcttcgatct ttagaatcaa agtcggctgt
     1261 catccgctcc tacgccgacc atcagcgatt cttatcaaaa ggataagaat ctttagctac
     1321 cattattcca cgtccagcca tataatccgc ccgaaatttc gtagcttaac ccttacttcc
     1381 aaccaatttc gcttcgaatg agaggatgaa atgagaaaac cactgtttgc gtttttgctc
     1441 ctgacgttct gtctcattgc ggtggccaag ggccagggaa ctacctcccg cgttacggga
     1501 actgttcacg atgccaacgg cgccgcgatc gccggtgcga cggtaacact gacgaatgag
     1561 gctaccgcag tttcttttac ggcacagacc agcgatagcg gcacgtattc cttcgacctg
     1621 gtccaggtcg gaaaatacac cgtcgcgatc gagaagcaag ggttcaagaa gttcgtcagt
     1681 cagggcaatc ccgtcaacgt caaccagccc gcgacggtga atgccacgat ggaaaccggc
     1741 gtggtgcagg aaacggtgct cgtctcggcc gccgccgaac aggtgcagtt gagcacgtcc
     1801 ggaaacctcg gcaccaccat cgagcaacag acgctcgaga gtctgcccat cgtcggcacg
     1861 cgcggccgca atcctctcga cctgctgaac tttcaacccg gcgttgtgtt tggcggcaac
     1921 accggcggcg cagtcaacgt gaacggctcg cgcgatcgag ctttcaactt cacgctcgac
     1981 ggtatcgaca tcaacgagtc gaccgccggt ggttcaaact tcacgccgct tcgtccgaat
     2041 ccggattcgg tccaggagtt tcaggtcgtc accagtaact tcaccgccga gctcggacgc
     2101 agcagcggcg cgcaagtcac gctcgtcacc aagtcgggct cgaacgagtt tcacggcaac
     2161 ctgtttgaat actaccgcac accagcactc gacgcgcgaa gctatccggt gacgatcgcg
     2221 ggcgcggcga aggaccagtt cgtgcaacac atcttcggcg gcagtctcgg tggtccactc
     2281 ttcaatcccg gtttcggcga aggcaatcgc gccggttggt tgagagacaa agccttcttc
     2341 ttcgtcaacc tgcaattcct gcgcgcgtac gacacggcgc tcgtcacgcg aactgtttac
     2401 acgcaggccg cacgacaagg actgttccgc tacgttgtcg gccgtgcgaa tgcgcccgcc
     2461 ggcactgcca cacccgcagt caacggcaat ggagcgccgg tgcttccggc ttgtaacggc
     2521 acgccgccga caaactcgcc gtgcatcgct tcatacaaca tcgcgaccaa tccaaccgga
     2581 gtcggcctcg atccgacgct gagccaattg atcaacaaca tgccgttgcc aaacaacttc
     2641 accaccggcg acggcctgaa caccgcaggc ttcaacttcg cttcgccgca acgcgaaaag
     2701 cagtatgact tcgtcagcaa gtttgacttc acgatcaacg acaagagttt gatctacgtg
     2761 cgctatgcgc agggaagtca aagcactttc ggcgactcgg ccaacggcgg ccgcccggtc
     2821 tttcccgatg cgccgaactt cgtggatacg tcgcgcacgc cgaagaacct cgccatcaac
     2881 tggcgttggt ctccgaccgc gactttcaca aacgaagcca tcttcggcat cagcaaattc
     2941 ttctttactt tcgccacgcc gaatcccgat cagaatctac cgttctcgtt catcaacgtc
     3001 gccacgccaa acacaaattt ctcttacaac gcgcgcggcg tccgaacatt ccagttcatc
     3061 gacaacgcga ctttgatccg cggctcgcac acgctcaagg gcggaatcaa cttccgcttc
     3121 aaccgccatc gcgacgatcg ttcgaacgtt gccggttcgg cgatcgagcc ggtcgtgacg
     3181 ctgagtggcg ttgccggttt caccggtttc aatctgccgg cgtcaggcgc gaccagtatc
     3241 aacgccaacg atctcactcg cctgcaaaac acgatcgtgg accagcttgg cagagtcaac
     3301 actgtctcgc aggccttcgt tctggacccg agtaacccgt caggctttgc tccggcagga
     3361 acaagatggc tgaacgaagc caactacacc gagctcgatt tttacttcca ggacaactgg
     3421 cgcgcgcgat cgaatctcgt gttcgacctc ggtctgcgtt gggaagcgaa gttgacgccg
     3481 tccgttaacg gacgtccgat tctcgtgccg aaccagtcgg tgaaactcgg cgccacgccg
     3541 tcgaacacgt tgaaatgggt tgaaggcgat ctcttcgaaa gcgacttcgg caagtttatg
     3601 ccatcggtcg gattcgcgtg ggacccgttc aagagtggca agacttcggt gcgcggcaac
     3661 taccggctcg cgtctgacag aatcgccacc ttccttttcg gctcgttcat tttccaaagc
     3721 acgcccggaa acaacaccgc cgccacgaac tcgaacttcg gcgcgggcgg tgggctcttc
     3781 cgcaacattg gaccagtcat cgcgggcctc gcgcctgctt caacgcctga cgcgctgcgc
     3841 cagccggccc agttcagcac tgcgtcgacg agcgtgatcg atcccgatct gcagtttccg
     3901 caagtacacg aatggtcgtt ctcgttccag cgagagatcg ggcagaacgt tgtcgaagtg
     3961 aactacatcg gcaagcacgc ggtccatctg ctcggtggtt acaacgtcaa ccaggtaaac
     4021 atctttgccg gcgtgccggg tctcagcgaa gcgaatttcc tggatgcctt caacaagatt
     4081 cgggccagct cctcctacaa cagcccgttg attaacctgc tcatgtcggg caatgcggcc
     4141 aacaacggcg gcactgctcg tttccgcgct ctcaacacga caaacatcac tcaaggtagt
     4201 gttgccgccg ccgctctggt cgtctcccaa aagacttgtg ttgccgcgga cgtgaccgcg
     4261 gggatctgca gcaacgcaaa cctcaatcgc cggctgctcg acgtcaacgg ttttccgttt
     4321 ctcctgcagc cgtttcctca gttcacgggt ggtctgaatg ttttcgacag taacgactac
     4381 tcgaactatg gcgcgcttca gatgatcttc aaacgcagaa tcaacgcggg actgggcttc
     4441 cagttcgctt acacgctctc gaagtcgaaa gataaccggt cgtgggatcc gtctctcagc
     4501 ggcgtctcaa ccggatcggt ccaggcggcg tcgagtacgc ctttcgacct gcgcgatcgt
     4561 aatttgaact acacgtactc cgacttcgat cggcgtcacg tctttcaggg cacttacgtt
     4621 tacgaactgc cgtttggcaa aggccggaag tttggcggtg acctgccgtc ggttgtggac
     4681 tacatcgtcg gcggatggca gatggcggga acagtgctct gggcttcggg ccgcccgttc
     4741 acggtttact cgggcatcaa cacggtcagc aacgtggtcc aatccactgc cgactgcaat
     4801 ggctgcacgc gaaacagcgg acgcctagtt ttggaaagcg gcaggaactt ctggttcgac
     4861 acttcaacgc gcagccagtt ctcggcaccg gcgcccggct cgatcggcaa caccggccgc
     4921 aacttcttcc tcgcgccgaa ttacttccag tgggattcgt cgctttcgaa gaagttcaaa
     4981 ctcggcgagc gcgtgagttt cgacatccgt ctcgacgcgc gcaacgtcct gaacaacccg
     5041 tcgtttgata acccgacggc cgtgatcacc tcgacgatct tcgggcgcat caacgacagc
     5101 gtgacgaaca acgcacgccg catccagctc tcgggcaagc tgagcttcta aatcacaaga
     5161 ggcacaagag cacagagaag tctctgcgtt tcttgtgcct cttcgtgtat ttaaaactgc
     5221 actttcaaag caaactggat cacgcgcgcg gcctcacccg tctgcacgat cgtctgcgtt
     5281 gaaggtggcg caaccgctgc gcaacatgcc gaagcaaaca cgctcgacct gatgctcggc
     5341 gaacccgtcg atgcgtcacg cgggttgtcg aagttcgtgt gattgaaagc attgaacatc
     5401 tcggtacgaa actggat
//
LOCUS       DASWTX010000725         2728 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_339135, whole genome shotgun sequence.
ACCESSION   DASWTX010000725 DASWTX010000000
VERSION     DASWTX010000725.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2728
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339135"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..991)
                     /locus_tag="VGD38_11020"
     CDS             complement(<1..991)
                     /locus_tag="VGD38_11020"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HEY0728593.1"
                     /translation="MRIGLDGMPLAQLRTGVGTYTFELARALAAEAPADEFELISPLP
                     YDETGPTNVPANLQLIYSRPNFLQRRWWTLGLPSYLKRNPLALFHGTNYEVPLRAQCP
                     TVVTIHDLSLLLHSSTHEARAVRRARLLLPLMARRASRIITPSEQVRDEVCEHLKIHR
                     DKVFATPLAPRASFTPLPLPETVETRRRLGIEDEFLLFTGTIEPRKNLATVIEALEVL
                     LLVTGLEPQLVVAGKTGWKVDGVLARVQKSPIRDRVRFVGFVTDEELRALYSSCRAFV
                     YPSIYEGFGLPPLEAMACGAPVVSSRVPSIKESVARIISATDSKGLAKTIVKLL"
     gene            990..2396
                     /locus_tag="VGD38_11025"
     CDS             990..2396
                     /locus_tag="VGD38_11025"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY0728594.1"
                     /translation="MNQPRLEIDDLASVIRESMAAQQNDQPPRRSVQNVSPETAPPKL
                     RLQPDFEPRSDHRYHLNDLLRFHDRVFVQAAYRAVLKRSPDETETLRDLKRLRSGYVN
                     KVDLLADLRFSQEGRAKGVQVDGLLVPMLIRRLGQLPLIGYPIRLGIALMRLPNSIRD
                     QREFGSYVLSQHEQIADFINVTADRLTQRIDSLATEQQTLAQRQTDSQQWQEYFEGVA
                     GTYFDDMKYRIATLRADTSQELAALRFRLGDVTDPELEQLYVALEDRFRGSRAEIKER
                     FREYLPYVKDSTPVVDLGCGRGEWLELLTENGIAARGVENNPLQVRQCTDRGLDVAEQ
                     DLFAFLQSLPDDSAGTITGFHIVEHVPFSALVELLNEVLRVLRPGGVAIFETPNPENV
                     IVGSNYFYLDPTHRHPLPTELMEFLFKNRGFENVELLMLHPWESGRVPGEGLLAERFN
                     AYFYGPMDYAIVGRKVGP"
     gene            2393..>2728
                     /locus_tag="VGD38_11030"
     CDS             2393..>2728
                     /locus_tag="VGD38_11030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728595.1"
                     /translation="MRILIATVQVPFIRGGAEVHAEGLRDALVAAGHEAEILAIPFKW
                     YPPEKILDHILACRLLDVSEVAGTRVDRLIGLRFPSYFIPHPNKVLWILHQHRTAYEL
                     WDHALSDLVY"
BASE COUNT          564 a          828 c          766 g          570 t
ORIGIN      
        1 tcagcaactt aacaatagtt ttagctaacc ccttagaatc cgtggccgag ataattcgcg
       61 ccacggattc ttttatgctc ggaacccggc tcgataccac gggcgcccca cacgccatcg
      121 cttccaacgg cggcagtcca aacccttcat aaatggaagg gtagacgaaa gcgcggcacg
      181 acgaatacag cgcccttagc tcttcatccg tcacaaaccc cacaaagcgc acccgatccc
      241 gtatcggtga tttctgtact cgcgccagaa ccccatccac cttccaaccc gttttaccgg
      301 caactactaa ctgcggctcc aaaccagtca ccagcaacag gacttccaga gcttcgatca
      361 ccgtcgccag gttcttgcgc ggttcgatcg tgccggtaaa gagcaggaac tcgtcttcaa
      421 tacccaggcg tctccgcgtc tcaacggttt ccggcagtgg cagcggcgtg aaactcgcgc
      481 gcggcgcgag tggtgtcgca aacaccttgt cgcgatgtat tttcaagtgt tcgcagacct
      541 cgtctcgcac ctgttctgaa ggcgtgatga tgcggctcgc cctgcgcgcc atcagcggca
      601 gcagcaaacg cgcgcgacgg accgcgcgcg cttcgtgcgt gctagaatgc agcagcaacg
      661 agagatcgtg aatagtaact accgtcgggc actgcgcccg caacggcacc tcgtaattcg
      721 tgccgtgaaa tagcgcgagc gggtttcgtt tgagatagga cggcagaccg agagtccacc
      781 agcgccgctg caagaagttc ggccgcgaat agatcagttg gagattggca gggacgttgg
      841 ttggaccagt ctcgtcatag ggcaacggtg agatcaactc aaactcatcc gcgggcgctt
      901 cggccgccaa cgcacgggcc agctcgaacg tgtacgttcc gacgcccgtt cgcagttggg
      961 ccagcggcat tccgtcgaga cctatgcgca tgaatcaacc tcggctcgag atcgacgatc
     1021 tggcgtccgt aattcgcgag tcgatggcgg cgcagcaaaa cgatcagccg ccgcgccggt
     1081 ctgtgcaaaa cgtctcaccc gaaactgctc ctccaaaact caggctgcaa cccgacttcg
     1141 aaccgcgttc ggaccatcgc tatcacctga acgatctgct gcggtttcac gaccgcgtct
     1201 ttgtgcaggc tgcgtatcgc gcggtcttga aacgttcgcc tgacgaaacg gaaacgctgc
     1261 gcgatctcaa acgtttgcga agcggttacg tcaacaaggt cgacctgctc gcggacctgc
     1321 gcttttccca ggaaggccgg gccaagggag ttcaggttga cggcctgctc gttccgatgc
     1381 tgatcaggcg tttgggccaa ctgccgctca tcggttatcc gattcgtctc ggtatcgcgc
     1441 tgatgcgttt gccaaactcg atccgcgatc agcgggagtt tggcagttat gtcctgtcgc
     1501 agcacgaaca gattgcggat tttatcaatg tcacggcgga tcgcttaaca cagcgaatcg
     1561 atagtctcgc caccgagcaa caaaccctcg cgcaaagaca aacagactca cagcagtggc
     1621 aggagtattt cgagggcgtc gccggcacgt atttcgacga catgaaatat cgcatcgcta
     1681 ccttgcgcgc cgacacttcg caagagttgg cagcgttgcg ttttcgcctc ggcgacgtga
     1741 ccgatcccga gctcgaacaa ctctacgtcg cgctcgaaga tcgttttcgt ggatcgcgcg
     1801 cggagatcaa ggaacgattt cgcgagtatc tgccttacgt gaaagacagc acgccggtgg
     1861 tcgatctcgg ttgcgggcgt ggcgagtggt tggaactgct cacggaaaat ggaatcgccg
     1921 cgcgcggtgt cgagaacaac ccgctccagg tccggcaatg caccgatcgt ggtctcgacg
     1981 tcgccgaaca ggatctcttc gcgtttctcc aaagcctgcc cgatgacagc gccggcacga
     2041 tcacgggctt tcacatcgtc gagcacgttc cgttcagcgc gctcgtggag ttgctgaatg
     2101 aagtgctgcg tgtgcttcgt cccggcggcg tcgcgatctt cgaaacaccg aatcccgaaa
     2161 acgtcatcgt cggcagcaac tacttctatc tcgacccgac tcatcggcat cctttgccaa
     2221 ccgagttgat ggaatttcta tttaagaatc gcggctttga aaacgtcgaa ctgctcatgc
     2281 tgcatccgtg ggagagcggc cgcgtccccg gcgagggcct tctggcggaa cgtttcaatg
     2341 cttactttta cggaccgatg gattacgcca tcgtgggccg gaaggttggt ccatgagaat
     2401 cctcatcgcc accgtccagg ttcctttcat tcgtggcggc gcagaggttc acgccgaagg
     2461 cttgcgcgac gcgctcgtcg cggcgggaca cgaagcggag atactcgcga ttccgttcaa
     2521 gtggtacccg ccggagaaaa ttctcgatca cattttggcg tgccgcctgc tcgacgtttc
     2581 ggaagttgcg ggcacgcgtg tcgaccggct catcgggttg cgtttcccgt cgtatttcat
     2641 tccgcacccg aacaaggtgc tctggatttt gcaccagcat cgcacggcgt atgagttgtg
     2701 ggaccatgcg ctcagcgacc ttgtttac
//
LOCUS       DASWTX010000726         3496 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_295145, whole genome shotgun sequence.
ACCESSION   DASWTX010000726 DASWTX010000000
VERSION     DASWTX010000726.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3496)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3496)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3496
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295145"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..261
                     /locus_tag="VGD38_11035"
     CDS             <1..261
                     /locus_tag="VGD38_11035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728596.1"
                     /translation="ERAAANHREVSLAAKVNWLRKTLQSRVTLVFDHAAGLRCFCMGG
                     AAVGVAELHVFWRCLKSLTNGVVIGNDDCGRLMTINQEQGES"
     gene            complement(481..1509)
                     /locus_tag="VGD38_11040"
     CDS             complement(481..1509)
                     /locus_tag="VGD38_11040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HEY0728597.1"
                     /translation="MLTRFMVAETLIAIKDLKVHFNLGRNRVVKAVDGVTVDIAKGET
                     LGLVGESGCGKSTLGRAVLRLTEPTSGQVLYRNNDLAHLSGRQLREQRRHLQIIFQDP
                     YASLNPRMTVGQIVGEPLETFRLARGREAEQRVQELLETVGLSKRFIKRYPHEFSGGQ
                     RQRIGIARALAVDPDFIVADEPISALDVSIQAQIMNLLEKLRREKNLTYLFISHDLRA
                     IRHVSDRVAVMYLGRLVEVADAKTIYAEPLMPYTKALISAVPVPDPEIEATRQRIMLE
                     GDVPSPINPPKGCPFHTRCPYAIDVCKEVVPQLVEIKPAHFAACVRISPAMPHIEEVP
                     PGTAPGLE"
     gene            complement(1484..2461)
                     /locus_tag="VGD38_11045"
     CDS             complement(1484..2461)
                     /locus_tag="VGD38_11045"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0728598.1"
                     /translation="MILLEVKDLRTYFETDDGLVKAVDGISFQLQRGETLGIVGESGS
                     GKSVTNLSIIRLVPAPPGKIAGGEVLFKGEDILLLPPDAVRKIRGRRIAMIFQDPMTS
                     LNPFMKISRQLMEMTQLHLGHTKSQAYEHAIKMLETVGIPDARTRADSYPHEFSGGMR
                     QRVMIAMALSCEPELLIADEPTTALDVTIQAQILELIKKLKQETGTSVILITHDLGVV
                     AGMTDHVIVMYAGKIFEQAKTKELFARPGTPYTKGLLRSVPDPTDEQGKLYQIPGLPP
                     DVAHLKPGCPFAERCERAEDICRKEFPPFVELTPDHHSLCHFAHEVYGG"
     gene            complement(2458..3414)
                     /locus_tag="VGD38_11050"
     CDS             complement(2458..3414)
                     /locus_tag="VGD38_11050"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0728599.1"
                     /translation="MQPEPEIHTEGGEFVKGTSLWRDAWRRLLKNKLAVFGLVVVILI
                     TLASITGPTIIKRTFGFTPDYIPTGDMKLVRSFPPFKGPDGEFSWKHPMGTDNAGRDQ
                     LARVLQGGQISLFVGVIATLVSLIIGVSYGAISGYVGGRVDNLMMRIVDVLYSLPYVI
                     LVIVLLSMFRSQTPRGQLILLFIALGSVSWLTMARIVRGQVLSLKNQEFVLAARATGV
                     SAPRIIFRHVVPNTLGPVIVYATLTIPQIMLTEAFLSFLGLGVQAPLASWGSLAADGI
                     QNIAIFPWQLIFPGVTMALTLFSLNFLGDGLRDALDPQMRTI"
BASE COUNT          761 a          999 c         1032 g          704 t
ORIGIN      
        1 gaacgcgcgg ccgccaatca ccgcgaggtt tcgcttgccg ccaaggtcaa ctggcttcgc
       61 aaaacactgc agtcccgcgt gacacttgta ttcgatcatg ccgccggcct tcgttgcttc
      121 tgcatgggcg gcgccgcagt aggggtcgca gagttgcacg tgttctggcg atgtctgaaa
      181 agcctgacaa atggagttgt tattggaaac gacgactgcg ggcggctgat gaccatcaac
      241 caggagcagg gcgagtcctg agttggccgc gagcccatcc tgaacctccg gccacgcggg
      301 aggggcatct tcgcggtgtt cctgagtatt tggggcaatg ggggatttct tcattagctt
      361 ctgggcacaa gcctatggaa ccctccctca tccgcacacg aggattacct tagtcctaaa
      421 cagcgaatag caaggggatt tcaagggcag taggccaaaa cgccacgaaa aaagcgagct
      481 ttattcgagg ccgggagcag tgccgggcgg aacctcctcg atgtgaggca tggccgggct
      541 gatcctgacg catgcggcaa aatgcgcagg cttaatctca acgagttgag gaaccacctc
      601 cttgcaaaca tcgatcgcat acggacaacg cgtatgaaaa gggcatcctt ttggcggatt
      661 gatgggcgag gggacgtcgc cctccagcat tatacgttgt ctcgtcgctt cgatctcggg
      721 gtcgggcacg ggcacggccg atatgagcgc cttcgtgtaa ggcatcaatg gctcggcgta
      781 gatcgtcttg gcgtcggcaa cctccaccag cctgccgagg tacatcactg ccacccgatc
      841 cgaaacgtgc ctgatcgccc gcaggtcgtg tgaaatgaaa agataagtga ggttcttctc
      901 tcgccgcaac ttctcgagca ggttcatgat ctgcgcctga atcgaaacgt ccagcgcgga
      961 gatcggctcg tcggcaacga tgaaatcggg atcgaccgcg agtgcgcgcg cgataccgat
     1021 gcgttggcgt tgtccgcctg agaattcgtg cgggtagcgt ttgatgaatc tcttactcag
     1081 accgacagtc tcgagtagct cctgaacgcg ctgctccgct tcccttcctc gtgcgagacg
     1141 aaacgtctcc aaaggttcgc cgacgatctg gcccacggtc atgcgtggat tcagcgacgc
     1201 gtaaggatcc tgaaagatga tttgcagatg acgccgttgt tcgcgcaact gcctgcccga
     1261 gagatgggcc aggtcgttgt tgcgataaag aacttgtccg ctggtcggtt cggtgagccg
     1321 taaaacggca cggccgaggg tcgacttgcc gcagccggat tcgccgacga gtccgagcgt
     1381 ctctcccttt gcgatatcga cggtcacgcc gtcgaccgcc ttcacgacgc gattgcggcc
     1441 gaggttgaag tgcaccttta gatctttaat ggcgatgaga gtttcagcca ccataaacct
     1501 cgtgagcaaa atgacagagt gaatgatgat cgggtgttag ctcgacaaac ggcggaaact
     1561 ctttccggca gatgtcctcg gcgcgttcgc aacgctcggc aaacgggcaa ccgggtttca
     1621 gatgggccac gtcgggcggc agcccgggaa tctggtaaag cttgccttgc tcgtcggtcg
     1681 gatcgggtac cgagcgcagc agtcctttcg tgtacggagt accgggacgc gcaaacaact
     1741 ctttcgtctt cgcctgttcg aagatctttc cggcgtacat cacgatcacg tgatcggtca
     1801 tgccggcgac gacgccgaga tcgtgcgtga tcaggatgac gctggtgccg gtttcctgtt
     1861 tgagtttttt gatcagttcg agaatctgcg cctggatcgt gacgtcgagc gccgttgtcg
     1921 gttcgtccgc gatcagcaac tcgggttcgc acgaaagcgc catcgcgatc atcacgcgct
     1981 gtcgcatgcc gccggaaaac tcgtgtggat aactgtcagc tcgcgtgcgc gcgtcaggta
     2041 tgccgacggt ctccagcatc ttgatggcgt gctcgtaagc ctgcgatttc gtgtgaccga
     2101 gatgcagttg cgtcatctcc atcaactgcc tggagatctt catgaacggg ttcagcgacg
     2161 tcatcgggtc ctgaaagatc atcgcgatgc ggcgcccgcg gatcttgcgc accgcgtcag
     2221 gcggcagcaa caggatgtcc tcgcctttga agagcacttc gccgccggcg atctttcccg
     2281 gaggagcggg aacgaggcgg atgatcgaga ggtttgtaac agacttgccg gagcccgatt
     2341 cgccgacaat gccgagcgtc tcgccgcgct ggagttgaaa cgagatcccg tcgacggcct
     2401 ttacgagacc gtcgtcagtt tcgaagtacg tgcggagatc tttgacctct aaaaggatca
     2461 aatggtcctc atttggggat caagcgcatc ccgcaggccg tcgcccaaaa agttgagtga
     2521 aaagagggtc agcgccatcg tgacgcccgg aaagatcagt tgccacggaa agatcgcgat
     2581 gttctggatg ccgtcggccg cgagactgcc ccacgatgcg agcggcgcct gcacgcccaa
     2641 accgagaaac gacagaaacg cctccgtcaa catgatctgc ggaatcgtca gcgtggcgta
     2701 gacgatcacg ggtccgagag tgttcggcac gacatgacga aagataatgc gcggtgctga
     2761 cacgccagtc gcgcgcgctg ccaacacaaa ttcctggttc ttcagcgaca gcacctggcc
     2821 gcgcacgatg cgggccatcg tcagccacga cactgaacca agcgcgataa acagcagtat
     2881 caactgcccg cgcggtgttt gactgcgaaa catcgacagc aggacgatca ccaggatcac
     2941 gtacggcaac gaatagagca catcgacgat gcgcatcatc aggttgtcaa cacgcccgcc
     3001 gacgtaaccc gagatcgcgc cgtagctgac gccgatgatc aacgacacga gcgtcgcgat
     3061 gacgccgaca aacaacgaga tctgcccgcc ctgcaagaca cgcgcgagtt gatcgcgtcc
     3121 ggcgttgtcg gtgcccatcg ggtgtttcca cgaaaactca ccgtcaggtc ccttgaacgg
     3181 cggaaacgat cggacgagtt tcatgtcgcc ggtcgggatg tagtcaggcg tgaaaccaaa
     3241 cgtgcgcttg atgattgttg gaccagtaat cgaagcgagc gtgatcagta tcacgacgac
     3301 gagaccaaac acggccagct tgtttttcaa caaacgccgc catgcgtcac gccataacga
     3361 cgtgccctta acaaactcgc caccttcagt gtgaatctct ggttccggtt gcattactcg
     3421 tatctcacgc gtggatcgag gtacgcataa acgatgtcca ccaacaggtt cattcacagc
     3481 aaagtgatcg cgatga
//
LOCUS       DASWTX010000727         2418 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_225660, whole genome shotgun sequence.
ACCESSION   DASWTX010000727 DASWTX010000000
VERSION     DASWTX010000727.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2418)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2418)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2418
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225660"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..548)
                     /locus_tag="VGD38_11055"
     CDS             complement(<1..548)
                     /locus_tag="VGD38_11055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728600.1"
                     /translation="MDLQTSAFERELESPVLNDVLPLCELAKGLEEAGEFEVAEDVLR
                     PFWAGVSHRPNTEGLTDDAKAELLLRTGTLTGWLGSARQIPGSQELAKDLISESGSLF
                     EAVGLSDKLAESRINLAVCYWREGGLDEARVTLGLVLESLHESRSEQKLRALLTSAIV
                     ESAATRDRSALLIYKEAAPLFQS"
     gene            688..924
                     /locus_tag="VGD38_11060"
     CDS             688..924
                     /locus_tag="VGD38_11060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728601.1"
                     /translation="MKPVKNLVFALLLVFAITGTISAGEVPIPPAPPRATAVDTDGAI
                     LPSPVDPYSEQSGETVETSDYLLFEAFKALFSLY"
     gene            complement(1156..>2418)
                     /locus_tag="VGD38_11065"
     CDS             complement(1156..>2418)
                     /locus_tag="VGD38_11065"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HEY0728602.1"
                     /translation="LTAVLRHATPLEAKYLVKLLAGDLRIGLREGLVEDAIARVFGQS
                     LADVSYANMLLGDIGETAARARRADLHDVNMRLFHPIKFMLATPAADLTDIARTMPEE
                     FLVEDKFDGIRAQAHVENGRVAIYSRTMDEITHRFPELVEPLRSLPTDAIIDGEIVPA
                     NDDAILPFSELQKRLGRKTVGTQLLIAVPVVLVAYDLLYAGGKVLIDEPLAERRRVLE
                     QLAPGSGPIRLSEGKLFTEAGLLDDEFDRARARGNEGLMIKSPGSSYKPGRRGREWLK
                     LKRAIATLDVAVTAVEVGHGKRRHLLSDYTFAVRRSNEEDELLNIGKAYSGLTDQELL
                     ELTEWFKAHTVQEFGHGRVRIVEPSIIIEVTFDRIQPSKRHKSGYALRFPRILRLRPD
                     KTTRDIDTLETVKRLVEGTERPQAGADP"
BASE COUNT          543 a          790 c          551 g          534 t
ORIGIN      
        1 gattgaaaca acggcgctgc ttctttgtag attaacaaag cactgcgatc ccgcgtggcc
       61 gcagactcga caatagcgct tgtcaaaagt gcacgcagct tttgctcgct tcggctttca
      121 tgtaggctct caagcaccaa ccctaatgtg acgcgggctt cgtcaagtcc gccttcgcgc
      181 caatagcaca cggctaagtt tatgcgcgac tcagccagct tgtcactcag accgacagcc
      241 tcaaacaagg acccactttc actgatcagg tccttagcaa gttcttgtga tccaggaatt
      301 tgtcgcgcgc ttccgagcca cccagttaat gttcccgttc tgagtaaaag ttcagccttc
      361 gcatcgtccg ttagaccttc ggtattaggg cggtgcgaca cacctgccca aaagggcctt
      421 aagacatcct cagccacttc aaactcgcca gcctcttcaa ggcccttcgc caattcgcat
      481 agcggcagga catcattcaa gactggactc tcaagctccc tttcaaaagc ggatgtctgc
      541 aaatccatat aagatctcca gttttttgat tggcaaggaa ccttgcaagc ctctcaattg
      601 acggatatta tcaagaccaa ccaataaatc tctttggttg cacaccactt caccggcttt
      661 gactacacat tcttgaggag aagatcaatg aaacctgtca aaaatttagt gttcgcgtta
      721 ttgctcgtct tcgccatcac aggcacaatt tcggctggcg aagtaccgat tccgcctgcc
      781 cctccacgag caacagcagt tgatacagat ggtgctattt taccatctcc ggtagatcca
      841 tattccgaac agtctggaga aacagtcgaa acgtcagatt acctgttgtt cgaagcgttc
      901 aaagcccttt tctctttgta ctaagaaaac gcacaaccac gaacaaaggc tctcgcaact
      961 tacgccgtag cgtagtctcg cggcctgcgt tctgtgtgtc cgggctcacc gataacgttc
     1021 gaaatacctg actgggaggc ggtgacgcgt tgcatcctac ccccatctgg ccgctgaagc
     1081 aataggaact ttcactttta cacggccaat ggggggtaat cttcagtcgc cacccccggt
     1141 ttcatggtct aattttcaag gatccgcccc ggcctggggc ctttctgtgc cttcaaccag
     1201 ccgttttacg gtctccagcg tgtctatgtc ccgagtcgtt ttgtccggcc gcagccgcaa
     1261 aatcctcgga aaacgaagcg catacccgct cttgtgccgc ttcgacggct gaatcctatc
     1321 aaacgttact tcgatgatga tactcggctc aacgatgcgg acccgcccgt gaccaaattc
     1381 ctgaacggta tgggccttga accactccgt cagctccagc aactcctggt cggtcaaccc
     1441 cgaatacgcc ttgccgatat tcaacagctc atcttcttcg tttgagcgcc ggaccgcaaa
     1501 cgtgtaatcc gacaacaggt gccgccgctt cccgtgcccc acctcaaccg ccgtcaccgc
     1561 cacgtccagc gtcgcgatcg cccgtttcaa cttcagccac tcgcgccccc gccgccccgg
     1621 cttatacgac gaaccgggac tcttaatcat caacccttcg ttgccgcgcg cccgcgcccg
     1681 gtcaaactcg tcatccagca ggcccgcctc ggtgaacagc tttccctccg acaaccgtat
     1741 tggaccgctg ccgggcgcca attgttccaa aacccgccgc cgctcggcca gcggctcgtc
     1801 aatcaaaacc ttcccgccgg catataaaag gtcatacgcc acaagcacaa ccggcaccgc
     1861 tatcaacagt tgcgtcccaa ccgtcttccg ccccagccgc ttctgcaact cactgaatgg
     1921 cagaatcgcg tcgtcattgg ccggtactat ctcgccgtcg ataatcgcgt cagtcggcaa
     1981 cgagcgcagc ggctcgacca gctccggaaa ccggtgcgtg atctcgtcca tcgtccgcga
     2041 atagatcgcg acgcgcccgt tttccacatg cgcctgcgcc cgaatcccgt caaacttatc
     2101 ctcaaccaga aactcttccg gcattgtccg cgcgatgtcc gtcaggtcgg ccgccggcgt
     2161 cgccaacatg aacttgatcg gatgaaacag acgcatgttg acgtcgtgta agtctgcacg
     2221 cctggcacgc gccgcggttt caccaatatc gcccaaaagc atatttgcgt aagacacgtc
     2281 ggcaagcgac tgcccaaaca cccgggcgat cgcgtcttct accaggcctt ctcgcagacc
     2341 aatgcgcaga tcaccggcaa gcagcttgac gagatacttg gcctccagcg gcgtcgcatg
     2401 acgaagaaca gccgtcaa
//
LOCUS       DASWTX010000728         1537 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_225696, whole genome shotgun sequence.
ACCESSION   DASWTX010000728 DASWTX010000000
VERSION     DASWTX010000728.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1537
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225696"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(98..640)
                     /locus_tag="VGD38_11070"
     CDS             complement(98..640)
                     /locus_tag="VGD38_11070"
                     /inference="COORDINATES: protein motif:HMM:NF024966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4440 domain-containing protein"
                     /protein_id="HEY0728603.1"
                     /translation="MLRSLSSRVFVSSRLFTQLSLLFVLVLLSLCVACQGQAGADTRA
                     ADEATLRNLDAEWSKAAGAKDLEKTVSYYTDDAIILPPNLPTITGKQGARAMWQGMFS
                     VPGFGGGWKATKVEVARSGDLGWVTGTYELTETDPSGRPIVDKGKYLEVWRKQADGSW
                     KCVADMFNTDLSSVGAAGER"
     gene            complement(765..>1537)
                     /locus_tag="VGD38_11075"
     CDS             complement(765..>1537)
                     /locus_tag="VGD38_11075"
                     /inference="COORDINATES: protein motif:HMM:NF013539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEY0728604.1"
                     /translation="SREMAKRYDVDATTILRTTQVLGYKSFAEFAAALRQHFVARITP
                     YTVLKAATREKRSVADHVDQALDKALDNLNILKSNLDKQKVIELARTIKRSRHVLVVG
                     LDFAASLSYYLAYGLLALGFDAEAPIGSSGNLQYKVEVLTSKDVLIAISFGQCLRDTV
                     EAVQRARQQGVPTFGITDSNTSPIARYCDSHLIAPVVSPSFVNSYVAPMAVISALHVA
                     CAHIDPNRSLSRLRPTDREYASGHRWYRESKRSNGNEP"
BASE COUNT          359 a          483 c          400 g          295 t
ORIGIN      
        1 gaacagtccg acgcttacga gcccgaagga tacaaacgcg tgctggtcca attgcgctcc
       61 ggagtgaagg cgtgggttta cctccagcgg gcctaatcta tctctcgcca gcagccccca
      121 cagacgacag atctgtattg aacatatccg ccacgcactt ccaactcccg tccgcctgct
      181 tacgccaaac ttccaaatac ttgcccttat caactatcgg ccgcccgctt ggatccgtct
      241 cggtgagttc gtaggtgccg gtcacccaac ccaaatcacc ggatcgcgcg acctcgactt
      301 tcgtcgcctt ccaaccacca ccgaatccag gcacgctgaa cattccctgc cacatcgcgc
      361 gcgcgccttg cttccctgtt atcgtcggaa gatttggcgg caggatgatc gcatcgtccg
      421 tgtagtaaga gaccgtcttc tccagatcct tcgcgcccgc agccttggac cactccgcgt
      481 cgagatttcg caacgtcgct tcatcggcag cacgcgtgtc ggcgccagct tgtccctggc
      541 aagcaacaca caacgacaat aggaccaaga cgaagagcag actaagctgc gtaaacaaac
      601 gagaagaaac aaaaacacga gaagacaacg atctgagcat cagcgggaac ctcagttgtg
      661 gattcagcag aacttatggc cggtgcgatc atacttcgga aacgccgtcg atgcgacttc
      721 aacgcgaatc gaacggcccg caagcgttaa gttgaagggt agtgttaagg ctcgttgccg
      781 ttcgagcgct tcgactcgcg ataccagcga tggcccgaag catactcgcg atccgtcggt
      841 cgcaggcgcg acaacgaacg attcggatcg atgtgcgcgc aggccacgtg aagggcgctg
      901 atcaccgcca tcggcgcaac gtaagaattg acaaacgaag gactcaccac cggcgcaatc
      961 aaatgcgagt cgcaatagcg cgcgatcggc gacgtgttgc tgtcagtgat gccaaacgtg
     1021 ggaacaccct gctgccgcgc gcgctgcacc gcttcaaccg tgtctctcaa acactggcca
     1081 aaactgatcg cgatcagcac gtctttcgac gtcaacactt caaccttgta ttgcaggttg
     1141 ccgctgcttc caatcggcgc ctcagcgtcg aagccgagcg cgagcaaacc gtaagcaagg
     1201 tagtacgaaa gcgacgccgc gaaatccaaa ccgaccacca gcacgtgacg cgaacgcttg
     1261 atcgtccgcg cgagttcgat cactttctgc ttgtcgagat tgctcttgag aatgttgaga
     1321 ttgtcgagcg ctttatcgag cgcctggtcc acgtgatcgg caacactacg cttctcgcgc
     1381 gtcgccgctt tcagcaccgt gtaaggcgtg atgcgcgcaa caaagtgttg ccgcagcgca
     1441 gccgcaaact cagcaaaact cttgtaaccg agaacctgcg tcgtgcgcag aatcgtggtc
     1501 gcgtcgacat cataacgctt cgccatctcg cgtgacg
//
LOCUS       DASWTX010000729         2318 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_182181, whole genome shotgun sequence.
ACCESSION   DASWTX010000729 DASWTX010000000
VERSION     DASWTX010000729.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2318
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182181"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..993)
                     /locus_tag="VGD38_11080"
     CDS             complement(<1..993)
                     /locus_tag="VGD38_11080"
                     /inference="COORDINATES: protein motif:HMM:NF019850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HEY0728605.1"
                     /translation="MTKIVALGPAWSNMAHYHLIGVCGTAMASLAGMLQARGHRVTGS
                     DENVYPPMSTMLRDLGIEVLQGYTAEHLTPSPDCVIVGNAIPRGNPEVEETLNRKLLY
                     RSQAEVVKEEFIRGRHSLAVAGTHGKTTTTSIAAWVMDQGGLDPTFLIGGVAQNFSTS
                     FRVTTSDYFIIEADEYDTAYFDKGPKFMHYLPELAIVNNIEFDHADIYRDLDAVKLAF
                     RRFMNLVPSNGRLIAGWDSPNVRAVVASFGARLFTNLETFGTSDEAKWQVRNADFSGG
                     LSKFEVVREGHTWGNFETPLLGEFNLLNCLAVIIAADAWGVSREQIKEALATFKN"
     gene            1248..>2318
                     /locus_tag="VGD38_11085"
     CDS             1248..>2318
                     /locus_tag="VGD38_11085"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HEY0728606.1"
                     /translation="MKQKKYLLSLTLIFVSPLLAFASNATAPHADRINVAAAENGGIA
                     SASSTADNYTPDAVIDGDRKGINLTTGGGWRDETPGAFPDWVQVEFNGVMSVDEVSVF
                     TQQDTWWSPLEPSPTLAFFNNGVTSFEVQRWDGEKWITIPGVLITNSNLVWRRFTFPK
                     VDTDRIRVLIHAAKIPNSTIVEVEAFGVPAVPPDPNPTPAPTPVPGSVEADLAARDIF
                     FDQDNNVGFGTHTPIFNDDGTTGAFVGRFVAIDGRLTGAAAYLGLGGTVPTPGDRVGV
                     LNFYNWAMGGADHRTAGIYSFNGPQLGTGTLEIATAPNFIGPVRRMQIAHTGEIGINH
                     LASTGNQLTVMGKSTASTTKALS"
BASE COUNT          536 a          632 c          633 g          517 t
ORIGIN      
        1 attcttgaac gttgcgagtg cttctttgat ttgctcgcgg ctcacgcccc acgcatccgc
       61 ggcgatgatc acggcgagac agttcaacag attgaactca cccaacagcg gcgtctcgaa
      121 gtttccccac gtgtgacctt cgcgaacgac ttcaaacttt gaaagtccgc cgctgaagtc
      181 ggcattacga acctgccact tcgcttcgtc gctagtgcca aacgtttcga ggtttgtaaa
      241 cagccttgcg ccaaacgatg cgacaaccgc gcgcacgttt ggactgtccc agccggcaat
      301 caatcgtcca ttcgacggca cgagattcat gaaacgacga aaagccagct tcaccgcatc
      361 gagatcgcga tagatgtcgg cgtgatcgaa ttcgatgttg ttgacgatcg cgagctcagg
      421 caggtagtgc atgaacttcg gacccttgtc gaagtaagcg gtgtcgtatt cgtcggcttc
      481 gatgatgaaa taatcgctag tagtcacacg aaaactcgta ctaaagtttt gcgcaacgcc
      541 gccgatgagg aacgtcggat cgagtccgcc ctggtccatg acccacgcgg caatactagt
      601 cgtcgtcgtt tttccgtgcg tgcctgcgac tgcgagcgag tgacgaccgc gaataaattc
      661 ttccttaaca acttccgcct gcgatcgata aagcagtttg cgattgagcg tctcttcgac
      721 ttccggatta ccgcgcggga tcgcattgcc gacgatcacg caatcaggcg acggcgtgag
      781 atgttccgct gtgtaaccct gtaacacctc gatgccgaga tcgcgcaaca tcgtcgacat
      841 cggtggataa acgttttcgt cagaaccagt cacacgatgt ccgcgcgctt gaagcatacc
      901 cgcaagcgat gccatcgcgg ttccgcaaac tccgatcaag tgatagtgtg ccatgttgga
      961 ccacgctggt cctaaagcga caatctttgt cactccagga atgaattcac tgtgctagac
     1021 tccgaaggtc cttagttggt cttgtctccc ccacacgatg acgtagagga taccacttta
     1081 gtgtcgcccc accgttaacc aagaacaaga gggtttccca cacccgtcaa gttcaatccg
     1141 atttcaaaag acacggcaag ttcctgtcgc tgtgttccga ggcgtttgtg tgttcgaacg
     1201 acacttatgg gattcgcaag tttggagaag aatgaaggga gtgaactttg aaacaaaaga
     1261 aatacctgct gagtctgact ctgatttttg tgtcgccact gttggcgttc gcgtcgaacg
     1321 ccactgctcc gcatgccgat cgtatcaacg tagcggctgc tgagaatggc ggtattgcca
     1381 gtgcctcatc cactgctgac aactataccc ccgatgccgt gatcgacgga gatcgaaaag
     1441 gcatcaatct aactacaggt ggtggttggc gcgacgaaac acccggcgct tttcctgact
     1501 gggtgcaggt cgaattcaac ggcgtgatga gcgtcgacga ggtcagcgta tttactcaac
     1561 aagacacgtg gtggagcccg ctcgagccgt cgccgactct ggcgttcttc aacaacggtg
     1621 tcacgagttt cgaagtgcag aggtgggatg gtgaaaagtg gatcacgatc ccgggtgttc
     1681 tgatcacgaa tagcaacctg gtgtggagaa ggtttacgtt tccaaaggtc gacacggata
     1741 gaatccgggt gttgattcat gccgcgaaaa ttccgaacag taccattgtg gaagttgaag
     1801 cgtttggtgt gccggccgtt ccgccggatc cgaatccgac gccggcgccg acgcccgtgc
     1861 ccggaagcgt ggaagctgat ctggctgcac gcgacatctt tttcgatcag gacaacaacg
     1921 tcgggtttgg tacccacaca ccgatcttta atgacgacgg aactaccggt gcattcgtcg
     1981 gcaggttcgt cgcgatcgat ggacgtctga caggagccgc cgcatatctg ggtctcggag
     2041 gcactgttcc gactcctggc gacagagtcg gcgtgcttaa cttctacaac tgggcgatgg
     2101 gtggcgccga tcacaggact gcggggatct actcgttcaa cgggccacag ctcggaacag
     2161 gaacactcga aatcgcgact gcgccgaatt tcatcgggcc tgttcgacga atgcagatcg
     2221 cacacacggg tgaaatcgga atcaaccact tggcgagtac gggtaaccag ctaacggtga
     2281 tgggaaaatc gactgcctcg actaccaagg cgctttca
//
LOCUS       DASWTX010000730         2152 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_225721, whole genome shotgun sequence.
ACCESSION   DASWTX010000730 DASWTX010000000
VERSION     DASWTX010000730.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2152
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225721"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..995
                     /locus_tag="VGD38_11090"
     CDS             <1..995
                     /locus_tag="VGD38_11090"
                     /EC_number="3.4.13.-"
                     /inference="COORDINATES: protein motif:HMM:NF013413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070573 - metallodipeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="membrane dipeptidase"
                     /protein_id="HEY0728607.1"
                     /translation="IRPWYVQNGGSTRRTLDMIDSVYRAVERNPRDLMIATSVADIRR
                     AKRLNKVACLMGIEGGHAIEDSLPTLREFYRLGVRYMTLTWNNTNNWADANRPPQRHD
                     GLNDFGREVVREMNRLGMLVDVSHVSDETMSDALDVSKAPIIASHSSARALSDVSRNI
                     PDDLLRRIAKNGGVVNVNFYSMFVDAKTVRPQSIERDRRLKAQQDALDEKYKNDPERL
                     AEESDKLEQANPLPPLPISKLIDHIDHIVKVAGIDHVGIGADFDGANDMPEGAKDVSM
                     LPNITYELLKRGYSERDIHKILGGNMLRAFAEAERVSRSMSRTISGDGSTKRLK"
     gene            complement(1053..1298)
                     /locus_tag="VGD38_11095"
     CDS             complement(1053..1298)
                     /locus_tag="VGD38_11095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728608.1"
                     /translation="MADDRMRNDDRDKNLGGQHQGDYGKGQQSPARNKQDDDFSTGKR
                     GTGQQSQQGEPKHMKDQFGTSERSGAGQGRQGGDQDI"
     gene            1478..>2152
                     /locus_tag="VGD38_11100"
     CDS             1478..>2152
                     /locus_tag="VGD38_11100"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen-III oxidase family protein"
                     /protein_id="HEY0728609.1"
                     /translation="MTQAGLYIHIPFCRSRCSYCDFATGLYENALAERYVHALSQEIS
                     SSNMAGARVDTIYFGGGTPSLLEPSQLEQVLSELSERFAVEAAAEVTLEINPGSITVE
                     KLRAFRSLGINRASFGAQTFDDRELAKLGRSHTAADARRTFHDLREAGFDNVSFDLIA
                     GLPGQTLDGWQRNVDEALQLQPEHLSFYLLEVHSGTPLAQHIERGLQPVPDEDLAAVM
                     YESMLER"
BASE COUNT          496 a          617 c          584 g          455 t
ORIGIN      
        1 acatcagacc gtggtacgtg cagaacggcg gctcgacgcg ccgcacgctc gacatgatcg
       61 actccgtcta tcgcgccgtc gaacgcaatc cacgcgatct gatgatcgcc acatcagtgg
      121 ccgacatccg ccgcgccaaa cggctcaaca aagtcgcgtg tttgatgggc atcgaaggcg
      181 ggcacgcgat cgaagactcg ttgccgacgt tgcgcgagtt ttaccggctc ggcgttcgtt
      241 acatgacctt gacgtggaac aacaccaaca actgggccga cgctaatcgt ccaccgcaga
      301 gacatgacgg actgaacgac ttcggccgcg aagtcgtgcg tgagatgaac cgtctcggaa
      361 tgctcgtcga cgtctcgcac gtctccgacg aaacgatgag cgacgccctc gacgtatcca
      421 aagcgcccat catcgcttcg cactcttccg cacgcgcgct cagcgacgtg tcgcgaaaca
      481 ttcctgacga tctgctgcga cgcatagcga agaacggcgg cgttgtgaac gtcaatttct
      541 acagcatgtt tgtcgacgcg aagacggtta gaccacaaag tatagaacgc gaccggcgct
      601 tgaaagcaca acaggacgcg ctcgacgaaa aatacaagaa cgatcccgaa cggctcgccg
      661 aagagagcga caaactcgaa caagcgaatc cgttgccgcc gttgccgatt tcaaaactga
      721 tcgatcacat cgatcacatc gtgaaagtcg cgggcatcga tcacgtcggc atcggcgctg
      781 acttcgacgg cgccaacgac atgcccgaag gcgcgaaaga tgtctcgatg ttgccaaaca
      841 tcacttacga actgttgaaa cgcggctaca gcgaacgcga cattcacaaa attctcggcg
      901 gaaacatgtt gcgtgcgttt gccgaagctg agcgtgtctc gcgcagcatg agtagaacga
      961 tcagcggcga cggcagcacc aagcggctca aataaaaaaa gagcacggca tgcgagccgt
     1021 gctcaaagca gaaaagaaga gagtttgttg agttagatat cctggtcacc accctgacgg
     1081 ccctggcccg cgcccgaccg ttctgaggtg ccgaattggt ccttcatgtg tttgggttcg
     1141 ccctgctggc tctgttggcc cgtgccacgc ttgccagtag agaagtcgtc atcctgttta
     1201 ttgcgtgcgg gtgactgctg gcccttgccg tagtcgccct gatgctgacc acccaaattt
     1261 ttgtcgcgat cgtcgttcct cattctgtca tctgccatct ttgtctaccc tcccatgttg
     1321 cgatggttaa ttgatagccg ctcttgagta actcaacctg cgtgccaatt aaatggcccg
     1381 taaatcattg aaactaaggc ctgatttgcg tccgcaaacc aatacgcggg ggaaatgaaa
     1441 tcatacacag cgtgcgtgtt atcatgagtt tgcattcatg acgcaagcag ggctttacat
     1501 tcacattccg ttctgtcgtt cgcggtgttc gtattgcgac ttcgcgactg gtctgtatga
     1561 gaacgcactc gcggaacgtt acgtacacgc gttgtcgcaa gaaattagtt cttcaaacat
     1621 ggctggcgca cgcgtcgaca cgatctattt cggtggtggt actccttcgt tacttgagcc
     1681 atcgcaactc gagcaagtcc tgagtgagtt gagcgagcga ttcgcggttg aggcagcggc
     1741 ggaagtcacg ttagagatca atccgggcag catcaccgtg gaaaaactgc gtgcctttcg
     1801 cagtctcgga atcaatcgcg cgagctttgg cgcgcagaca ttcgacgatc gcgaactcgc
     1861 aaagctggga cgttctcata cagccgctga cgcgcggcgc acatttcacg atcttcgcga
     1921 ggcgggattt gataacgtga gtttcgatct gatcgccgga ttgcctggtc aaacactgga
     1981 cggctggcag cgaaacgtcg acgaagcgct tcaattacag cccgaacatc tgtcttttta
     2041 tctcctcgag gtgcactcgg gaacgcccct ggcccaacac atcgaacgcg gactccagcc
     2101 cgttcccgat gaagatctcg cggcggtcat gtacgagtcg atgctcgagc gc
//
LOCUS       DASWTX010000731         3029 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_339242, whole genome shotgun sequence.
ACCESSION   DASWTX010000731 DASWTX010000000
VERSION     DASWTX010000731.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3029
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339242"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2362)
                     /locus_tag="VGD38_11105"
     CDS             complement(<1..2362)
                     /locus_tag="VGD38_11105"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0728610.1"
                     /translation="MKKLLFAFMLAALALSLSAVTAFAQSTAGVTGTVKDSNGAVIAG
                     ADVKLTDTKTGVELTTQTNDQGVYNFPKVLPGQGYKLSFTASGFQTLVINDVALGVGT
                     VVTHNAEMTIGEVSGTVVVTASNEVTLNTSDASVGNVIGERRLKELPIQIRNSPAALI
                     GLQPGVVGNNVGTGTTNRVGSVTGSRADQGNITIDGIDANDQATGQFAATVGNAPIDA
                     IQEFRAVSTNPGAADGRSSGGQVELVTKSGTNEFHGNVREYNRTAATAANSFFNNRAG
                     VARPQLTRNQFGGSIGGPIIKDTMFFFFDYEGRRDAQGISYLRVVPLNHFRQGGLGFL
                     NNTAGCAATARLNTNPNCITILSPAQVAALDPAGVGGNQALLQFINSRYPQANDLTAG
                     DGINTGGFRFNAPSKREDNTYTTRIDWNASSKQKFFGRFNIARRIQTDTVNSVAAQFP
                     GDPETAQIIVRDYTWVVGHTWTASPTLVNQITVGAARSGLLFPNNFDPVSPNSFTFGM
                     GLAAPFASISEQDRFVLTPTIRDDVTWTRGTHSFEFGGSFKPIRSESGIVNDFNFPTV
                     GLGGLLTSLAPSLRPGSIGTGTARTGNYDAAFTFLLGRYAQVATNFNYDQSGTAFAPA
                     TGKHRDYRYNELELYFQDNWRVRNNLTLNLGVRWHLYPAPYEADGFQAGPDVDMRSLF
                     DIRQRNNAAGIGTDTAEPQLRYDLIGKANNARSLYETDLNNFGPRFGFAYTPAFTSGI
                     LGKIFGDNRTVIRGGGSVVFDRPGGGITFIQDQVSYLFDNSFTTQFP"
     gene            complement(2730..>3029)
                     /locus_tag="VGD38_11110"
     CDS             complement(2730..>3029)
                     /locus_tag="VGD38_11110"
                     /inference="COORDINATES: protein motif:HMM:NF036831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEY0728611.1"
                     /translation="ARARMEPGVQHYAVDLVRRTRTHSFVHYGASPRASVALLLCSKA
                     LAAIRGRQFATPDDVRDVALPVLRHRLTLRAEAELDGVTPDAVITDILGAAEVPR"
BASE COUNT          687 a          806 c          878 g          658 t
ORIGIN      
        1 ccgggaactg cgtcgtgaac gagttgtcga acaggtacga gacctggtcc tgaatgaacg
       61 tgataccgcc gcctggacga tcgaaaacaa ctgaaccgcc accgcggatc actgttctgt
      121 tatcgccgaa gatcttgcca aggatgccgc ttgtgaaagc cggcgtgtag gcaaaaccaa
      181 agcgcggacc aaagttattc aggtccgttt cgtacaatga acgagcattg tttgccttgc
      241 cgatgagatc gtaccggagc tgaggctcgg cggtgtcggt cccaattccg gcagcgttgt
      301 tacgttgacg gatgtcgaac aaactgcgca tatcgacgtc cggaccggcc tggaatccgt
      361 ccgcctcgta aggcgccgga tacaagtgcc agcgaacacc gaggttcaac gtcaggttgt
      421 ttctaactct ccagttgtcc tggaagtaga gttcgagttc gttgtagcgg taatcgcgat
      481 gcttaccggt ggccggcgcg aacgcagtac cagattgatc gtagttgaag ttcgtagcga
      541 cctgagcgta acgtcccaga aggaaagtaa acgctgcgtc gtagttaccc gtgcgcgccg
      601 tgcccgttcc gatagaacct ggccggaggg agggggcgag cgaggtcagc agaccaccaa
      661 gtccgacggt cgggaagttg aagtcgttaa cgattcccga ctcggaacgg atgggcttga
      721 aagagccgcc gaactcaaac gagtgcgtgc ctctggtcca agtcacgtcg tcgcgaatcg
      781 tcggcgtgag cacgaagcga tcctgctcac tgatgctcgc aaacggcgcg gccaaaccca
      841 ttccgaaagt gaatgaattc ggcgagactg gatcaaagtt gttcgggaac agcaatcccg
      901 aacgggcagc accaactgtg atctggttga ctaacgtcgg gctggcggtc caggtgtggc
      961 ccacaaccca agtgtagtca cgaacgatga tttgagcggt ttcaggatcg cccgggaact
     1021 gagctgcaac cgagttaacg gtgtcagtct ggatacggcg agcgatgttg aaacggccaa
     1081 agaatttctg cttcgagctg gcgttccagt cgatgcgggt ggtgtaggtg ttgtcttcgc
     1141 gcttcgacgg agcattgaag cggaagccgc cggtgttgat gccatcgccc gcagtcaagt
     1201 cgtttgcttg cggataacgg ctgttgatga actgcagcaa cgcctggttt ccaccgacgc
     1261 cggcgggatc gagagctgcc acctgagccg ggctcagaat ggtgatgcag ttcgggttgg
     1321 tgttcaaccg tgccgtggcg gcgcaaccgg ctgtgttgtt aagaaagcca aggcctccct
     1381 ggcggaagtg attcaatgga accacgcgca agtaggagat gccctgggca tcgcgacgtc
     1441 cttcatagtc aaagaagaag aacatcgtgt ctttaatgat tggaccaccg atgctgccac
     1501 caaactgatt acgagtcagc tggggacgcg caacgcccgc gcgattgttg aagaagctgt
     1561 tcgctgcggt ggctgcggtg cggttgtatt cgcgcacgtt gccgtggaac tcgttggtgc
     1621 cgctcttggt caccaactcg acctggccgc cgctgcttcg tccatcagca gcgccggggt
     1681 tcgttgaaac cgcgcggaac tcctggatgg catcgatcgg agcgttgccg acggtcgctg
     1741 cgaattggcc cgtggcctga tcgttcgcgt cgataccgtc gatggtgatg ttgccctggt
     1801 cggcgcgtga accggtaacg gaaccaacgc ggttagtagt gccagtacca acgttgtttc
     1861 cgaccacacc gggttgcaaa ccgatcagcg cagcaggtga attacgaatc tgaattggaa
     1921 gctctttaag tcttcgttct ccgataacgt taccgacgct cgcgtcggag gtgttcagcg
     1981 taacctcatt ggaggccgtc accacaacgg tgccggaaac ctcgccgata gtcatttcgg
     2041 cattgtgtgt taccaccgtg ccaacgccga gagcgacgtc attgattacc agagtttgaa
     2101 aacccgaagc agtgaaactg agcttgtagc cttgacccgg caacactttg gggaagttgt
     2161 acacaccctg atcgttggtc tgggtggtca attcaacgcc ggtcttcgta tctgtcagtt
     2221 ttacgtcagc accggcaata accgcaccgt tgctatcctt aactgttcct gtcacacccg
     2281 cggtgctctg agcaaatgct gtgacagcag ataagctcaa agccagggcc gcaagcatga
     2341 aggcgaaaag caatttcttc atttgggctc cttcccgaaa catactttgt tggaggacct
     2401 tctcgaagcc gttttagagt gcttgttagc ttcagaagtc ttaatcatca aaatctcact
     2461 tgttaggaat ccgtgagatg aaaagttcga caaacatagg gagacaacac agcctgcctc
     2521 cgttatgcaa ggaatgttcc catatacagt ttttaggaga gaggcgcgga aatacctata
     2581 tagagcgacg gagaggagtc gtcgaaagca tgacgttcat ccaaaatcca aaagttcttt
     2641 tcaaaatctc aaattctaca aacccaatgt tcattcacat ttatgaataa tgcctcggca
     2701 tttttgtaca gttgtggtcc agcgacgttt tagcggggca cctcagcggc tccgagaatg
     2761 tccgtgatca ccgcgtccgg cgtgactcca tcaagctccg cttcagcacg taatgtcagc
     2821 cggtgacgaa gcaccggcaa cgcaacgtcg cgcacgtcat ccggagtcgc gaattgtcgt
     2881 ccgcgaattg ccgcgagtgc tttcgaacat aagagcaacg cgactgacgc acgtgggctc
     2941 gcgccgtagt gaacgaatga atgggttcgc gtacgacgga ccagatcgac agcgtagtgc
     3001 tgcacgcccg gctccatccg cgcgcgcgc
//
LOCUS       DASWTX010000732         2236 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_339256, whole genome shotgun sequence.
ACCESSION   DASWTX010000732 DASWTX010000000
VERSION     DASWTX010000732.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2236
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339256"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..754)
                     /locus_tag="VGD38_11115"
     CDS             complement(<1..754)
                     /locus_tag="VGD38_11115"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEY0728612.1"
                     /translation="MIPRKYIDRLRNELAGRVLEAGDPGYDQSIVIDNGRIDLRPGVV
                     VMCANARDVATAYRFAIEHEMHFTVRGGGHSAAGYCLNQGGMVIDLTNMTAKRLDLDR
                     QVVWCETGNRWRDLYLFLQATNTGLIPIGGGCPTVGIPGFMLGGGISFVSRSYGLSVD
                     NLISIDLITPDGKLRKISAESKSKEDRDLWWACRGGGGGNFGIAVAFEIRVHQPNTPT
                     MLVGQIRYPVEYAQEVLGFYNEWIQKAPDELAV"
     gene            complement(1067..1312)
                     /locus_tag="VGD38_11120"
     CDS             complement(1067..1312)
                     /locus_tag="VGD38_11120"
                     /inference="COORDINATES: protein motif:HMM:NF013540.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY0728613.1"
                     /translation="MGRSRRNKPKKLSQKLLAIRKRLNMSQTQMARALQLKVHYSAVS
                     NFELGTREPDMIVVLRYARLAGVPMESIVDDQMNLPE"
BASE COUNT          485 a          609 c          608 g          534 t
ORIGIN      
        1 agacggcgag ctcatccggc gctttctgga tccattcgtt gtagaaaccg agaacttcct
       61 gcgcgtactc gacgggatag cggatctggc ccacgagcat cgtcggcgtg tttggttgat
      121 gcacgcgtat ctcgaaggca accgcgatcc cgaagtttcc accgccaccg ccgcggcagg
      181 cccaccagag atccctgtcc tctttagact tcgactcggc ggagattttt cggagtttgc
      241 cgtcaggcgt gatcagatcg attgaaatca gattgtcgac gctgagaccg tacgagcggg
      301 aaacgaaact gattccgccg ccgagcatga agcccgggat gccgacggtc ggacagccgc
      361 cgccgatcgg aatcaaaccg gtgtttgtgg cttgaaggaa gagataaaga tcgcgccagc
      421 gattgccggt ctcgcaccag acaacctgtc gatccaaatc aagtcgcttg gcggtcatgt
      481 tggtgaggtc aatcaccata ccgccctggt tcaaacagta acccgcagcg ctgtgaccgc
      541 cgccgcgcac tgtgaaatgc atttcgtgct cgatggcgaa tctatatgca gtcgcgacgt
      601 ctcgcgcgtt ggcgcacatg accacgactc cgggccgtag atcgatgcgt ccgttgtcaa
      661 tgacgattga ttgatcgtaa ccgggatcgc ctgcttcgag tacgcgtccc gccagctcat
      721 ttctgagtct atcgatatat ttgcgtggaa tcatgacctt ctcctccgac gacttggtct
      781 ccagtcatct gcacagatct gcgaggtacc ttatgaattt ccgggagtta attgctgaca
      841 gtcgagaacg ctgaccttag aaagcctgct tgatcgaacc aggttgaaac gtaatctgct
      901 ctgggcgtag agcaatatgg caagtgagat cacgtcgggt cgcccgaggt aacataagcg
      961 ggttgggcaa cggcgcaata ctacacgcag tgataaaaaa tgcaagaact tttgcggcgt
     1021 agttgagcga gaatagcggt gaggtgaaag accgtggcgg ctttcatcat tcaggcaggt
     1081 tcatctgatc gtcgacaata ctttccatcg gcacgcctgc gagtcgtgca taacgtagga
     1141 ccacgatcat gtcaggttcg cgtgtgccga gctcaaaatt cgaaactgct gagtagtgaa
     1201 ccttgagttg aagcgctctc gccatttgtg tttggctcat gtttagacgc tttctgatcg
     1261 ccaacagctt ctgactcaac ttcttcggct tgtttcggcg cgagcgtccc atcaggccat
     1321 aactcctgac gaagatgcgc tcttgtattt atatgtattt tcacttacac tgcgcgccga
     1381 cctagaggat accctgaacg cccgaactaa tcgggcggat ctcactggcg ggtttgccct
     1441 cgcgcccttt tcaacactgc tcctttacat gtgtttgtag tttggagcgc gcgcagccca
     1501 gaggcaaatt gtgggtgcct gtgcgttccg cgagagcggt agttcggctt gagaatcggc
     1561 taccgctctc agtctgagtt ttttaatccc accaattcac atacaacatc attacaccgg
     1621 cggggtccgg cgctctttct tgctcatctt cgtaagaacc ggaggttagc gcacggattt
     1681 tcgcttagca acctatttgc gcgctttctt gttttcgtta atctgtggtc gttgtgttcc
     1741 tcagcgacga gcagaaggag gcattatggg gcatgggtaa aaaagggaca gcggttgtgg
     1801 tcctaatgtt tgcgttgttg atgagcaccg ttgttgcgca gcaaccgcaa cagcgcggcg
     1861 cgttgcaaga cccaccgtgg ctgaaggaat tcgttcacaa acggatcgtg tacagcgttc
     1921 cggggatgac gcgcgttaaa gtctcgaagg acgtgatcta caagcgcgtc gcgggcgccg
     1981 aactcaagct cgacgtttac tcaccactca acacgcggcg tggtgtgcgt cgtccagcgg
     2041 tgatcttcat tcacggtgga cgcattcctc cgaacttact cactacacct aaagactgcg
     2101 caatagcaag agtgttccgc cgatgtttat tgcgcgcgca ggcctcgaca atcccgagtt
     2161 caacgaggct atcgatcgct tcgtccaact cgcgctctca aagaacctca cagtcgaggt
     2221 agtcaatcac gccacc
//
LOCUS       DASWTX010000733         6522 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_295263, whole genome shotgun sequence.
ACCESSION   DASWTX010000733 DASWTX010000000
VERSION     DASWTX010000733.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6522
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295263"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            83..475
                     /gene="rplS"
                     /locus_tag="VGD38_11125"
     CDS             83..475
                     /gene="rplS"
                     /locus_tag="VGD38_11125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEY0728614.1"
                     /translation="MNRLDKIEETQLRKNIPEFQPGDTVRVHVRIKESETKERLQAFE
                     GVVIARKHGGARETITVRKTSFGVGVERIFPLHATIIDHIDLVKRGRVRRAKLYYLRG
                     LRGKAARIRERDTRGERNGEQAAAAKGK"
     gene            516..1661
                     /locus_tag="VGD38_11130"
     CDS             516..1661
                     /locus_tag="VGD38_11130"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HEY0728615.1"
                     /translation="MRIAIDAHSVGAKLGGNESYAVNLIEALAQIDSVNNYTLYVTTA
                     EARDRFHQRWPNFKVHTTLPHTPLIRIPLTLSAELRKHPVDVLHVQFTAPPFCPCPVV
                     VSVHDLSFEHLPQTFLRRSRTQLRLTVRHSARRADRILTLSEHTRGDVIKTYKIDPAK
                     VVAIPLAAPAHFGPVTDDKELQRVRHNYGIDGDYVLSVGSIQPRKNLVRLINAYASLR
                     GIHSGNSFPKLVIVGKKGWLYDETLRALEETGVKDSIVLTGYVPEPDLPALYSGALCF
                     VYPSYFEGFGLPPLEAMKCGAPVVVGDATSLPEVVGDAGLKVDPFDVSAIAAAIGEVI
                     NNSELRRELRVKGLKRAEMFDWQDTARQTLQVYEQVARKTYRSAAAT"
     gene            1663..2820
                     /locus_tag="VGD38_11135"
     CDS             1663..2820
                     /locus_tag="VGD38_11135"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF020874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0728616.1"
                     /translation="MRIAILGTRGIPASYGGFETFAEHLATRLVARGHEVTVYSRAHY
                     VSPRQLEYHGVRIEVLPTIRHKYFDTVVHTFLSAVHAVSRRFDVALICNSANAPFSPI
                     LRFTGTPVAINVDGLEHKRKKWGVLGRRYYRIAEYLSTVLPNEVVTDAQVIQDYYQVH
                     HNTPSTMIAYGSEVERRPDRAAVRKWRVEPNRYVLYVSRLEPENNAHLVIEAFKKVRT
                     AYRLLIVGDAPYAESYINNLKAQARGDKRIIFTGFVFGQDYRALQQNAYCYVHATEVG
                     GTHPALLEAMGYGNCVLTLATPENIEVVGDAGVPYIDEFDLAEKLQRVLRDGSLVHAY
                     RHRAQLRVRTHYDWENVVDQYERLFARMCGQELSETSRIPEPAETEISTTV"
     gene            complement(3150..4352)
                     /locus_tag="VGD38_11140"
     CDS             complement(3150..4352)
                     /locus_tag="VGD38_11140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728617.1"
                     /translation="MSSTNPVVQAIISGAAPQPARLAAARGMLPLQQHELLEILVALA
                     EGNDAELATAAKETLKAETPEDLLVAATADDTPPSVLAYLATQPDATLNIYEAAILNP
                     KTPDDALAKLAASTAHGSLLELITINQQRLVRAPELIDAILANPARTGEAERRARETR
                     KEFFEKERGARQIADELRARGQTAAAEFFETAELTTATGELSFDDAWVIAQHIEVSDD
                     DLDDSWLPAERYADLISETAEEITANVQRILEQERLETGSEVNAERVSLIRRIMFMNT
                     KDRVKLALKGDREARSILIRDSNKVVCSAVVNNPRITEQEIENVAAMRTVSDEVLRLI
                     AMNRSWARNYSIIHNLARNPKTPIPTAMNILLRIRTKDLLTLSQNRNVSETVRRQAHR
                     LANARSGE"
     gene            complement(4353..>6522)
                     /gene="secA"
                     /locus_tag="VGD38_11145"
     CDS             complement(4353..>6522)
                     /gene="secA"
                     /locus_tag="VGD38_11145"
                     /inference="COORDINATES: protein motif:HMM:NF009538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0017038 - protein import [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEY0728618.1"
                     /translation="LRDNMKFDLTTCVQRGHYFAVVDEVDSILIDEARTPLIISGPSD
                     EATDKYKNADAIIPHLKKGEDVDGKKTGDYVVDEKAHTAVLTEEGVEKAERLLGVGNL
                     YDPSNMELLHCVEQALKAHTLYKLDHQYVVQDGEVIIVDDFTGRLMKGRRWSDGLHQA
                     VEAKEGVEIEKENQTLATITLQNYFRLYEKLSGMTGTAETEAAEFASTYKLDVIVIPT
                     HMPMVRTDNSDVIYRTLPEKWDAVVEEIKNCHEKGQPALVGTVSVENSELIARRLSKA
                     AVPHNVLNAKYHEREAEIVAQAGRKGSVTIATNMAGRGTDILLGGNPDFMAREFLKKE
                     EIDPDEATDEQWKIAYERAKRIVEDEHNEVVGLGGLHIIGTERHESRRIDNQLRGRAG
                     RQGDPGSSRFFLSLEDDLMRIFAGDKVKALMQRLGMEKGVAIESGMVSKRIAAAQKSV
                     EGRNFEARKHLLEYDDVMNKQRETIYGLRRQLMEEPDQREYLMGDPPAAGVAYDLLSD
                     LTRQYLNPDISPDDWDVENYKIQIKTIYDFDVDSEGLDLQRYTSQEVVDTIWERLKEK
                     YKRKEEQIGPEAMRTYERIIMLNIIDAQWKDHLLSLDHLKQGIGLVGYGQKDPLVEYK
                     KQSFDMFQEMLDRIDTNTIRSLFNLQIVSGEPPETVRRRAPLRPSPLTFTGPNQGATP
                     AGQEDGKIKTVVRDQPKVGRNEACPCGSGKKYKKCHGINA"
BASE COUNT         1341 a         1837 c         1870 g         1474 t
ORIGIN      
        1 aggccgcact cgaaaagaca cggcgcaagc gccccgattt attgaagaac taataagtga
       61 acgcggtaga aggagcatca caatgaaccg attggataag attgaagaga cgcaattacg
      121 aaagaacatt ccggagtttc agccgggcga cacggtccgc gttcatgtcc ggatcaagga
      181 atccgagacg aaagaaagac tgcaggcttt tgagggcgtt gtgattgcac gtaagcatgg
      241 cggcgcacgc gaaacgataa cggtacgaaa gaccagcttc ggcgtcggcg tcgagagaat
      301 cttcccgctg cacgccacga tcatcgatca catcgatctc gtcaaacgag gacgcgtccg
      361 gcgcgccaag ctctactacc tgcgcggact tcggggtaaa gcagcacgta ttcgcgagcg
      421 cgatacgcgc ggcgagcgaa acggcgagca ggccgcggca gccaaaggca agtaagacct
      481 ttctcggtct gacaatttga aacgggagaa accgattgcg gatcgcaatc gatgcgcatt
      541 ctgtcggggc gaagctcggg ggaaacgaaa gctacgccgt taaccttatc gaagcgctcg
      601 cgcagatcga tagcgttaac aactacactc tctacgtcac cactgccgag gcgcgcgatc
      661 gttttcacca gcgctggccc aacttcaaag ttcacaccac gctgcctcac acgccgctga
      721 tcagaatccc actgacactc agcgccgagc tgcgcaagca tccggtcgac gtgctgcacg
      781 tacaattcac cgcgccgccg ttctgtccgt gtcccgtcgt cgtcagcgtt cacgaccttt
      841 ccttcgaaca tttgccacag acttttctac gccgcagccg cacccagttg agattgacag
      901 tgcggcattc tgcccggcgg gccgaccgga ttctcacgct ttccgagcac acccgcggcg
      961 acgttataaa gacctacaaa atcgatccgg caaaggttgt tgctattccg ctggccgctc
     1021 cggcccactt tggtccagtc acggacgata aggaacttca acgtgtgcga cacaattacg
     1081 ggatagacgg agattacgtt ttatccgtcg gttctattca gccccgtaag aatctggtgc
     1141 gtctaataaa tgcgtacgca tcgctgcgag ggattcactc aggaaatagt tttccaaaac
     1201 tcgtcatagt aggtaaaaag ggttggctct atgacgagac tttgcgagcc cttgaagaaa
     1261 ctggcgtcaa agattcgata gtgctgacgg gttatgttcc ggagccggat ctgccggcac
     1321 tttattccgg agcactctgt tttgtttatc cgtcatactt cgaaggcttt ggtttgccgc
     1381 cactcgaagc aatgaaatgc ggcgctccgg tcgtcgtcgg tgatgcgacg agcctgccgg
     1441 aagtcgtcgg tgatgccgga ttgaaggttg acccgttcga tgtctctgcg atcgcagcgg
     1501 ccatcggcga ggtaatcaac aattctgaat tgcgcaggga actacgtgtt aaaggtctaa
     1561 aacgggccga aatgtttgac tggcaagaca ccgcccggca aacattgcag gtctacgaac
     1621 aggtcgcgcg gaagacatac cgttccgcag cagctacgta aaatgcgcat cgctatcctg
     1681 ggaacccgag gtattcctgc cagctatggc gggtttgaaa ccttcgccga gcatctcgcc
     1741 acgcggctcg tcgctcgcgg tcatgaagtg accgtttaca gccgagcgca ttacgtttcc
     1801 ccgagacaac tcgaatatca cggcgtgcgg atcgaagtct tgccgacgat ccggcacaaa
     1861 tacttcgaca ctgtagttca cacgtttctg tccgctgttc acgctgtttc acgccgcttc
     1921 gacgtcgctt tgatctgcaa ctctgcgaat gcgccgttca gtccgatcct gcggttcacg
     1981 gggacgccag tggcgatcaa cgtcgatggg ctcgagcaca aacgcaaaaa gtggggcgtg
     2041 ctggggcgtc gttactatcg tatcgctgag tatctgtcga ccgtgttgcc gaatgaagtg
     2101 gtgactgacg cgcaggtgat tcaggattat taccaggtcc atcacaacac gccgtcgacg
     2161 atgattgctt acggcagtga agttgaacgg cgtccggatc gtgcggccgt gcgcaagtgg
     2221 cgtgtcgagc cgaatcgtta cgttttgtac gtctcgcggc tggaacccga gaacaatgcc
     2281 cacctcgtaa ttgaggcttt taagaaagtg cggacggcgt accggctgct gatcgtcggc
     2341 gatgcgccgt atgctgaaag ctatatcaac aacctgaagg cccaggcacg cggcgacaag
     2401 cgaatcatct ttacgggctt tgtttttggt caggattatc gcgcgctgca gcaaaacgct
     2461 tattgctacg ttcacgccac cgaagtcggc ggaacgcatc cggcgctgct cgaagcgatg
     2521 ggctatggaa actgcgtact gacactcgcg acacccgaga acatcgaagt cgttggtgac
     2581 gccggcgtgc cgtacatcga tgaattcgat ctagccgaga aactacaacg cgtgctgcgc
     2641 gacggttcgc tggtccacgc ctatcggcac cgcgcccagc tgcgcgtgcg aactcattac
     2701 gactgggaaa acgtcgtgga ccagtacgag cggctattcg cgcggatgtg cggccaggaa
     2761 ctttcggaaa cttcacgaat accggaaccc gcggaaaccg agatctccac gacggtttag
     2821 aaaataaaaa agcttcagaa agagggatgc cccgcctgtt cacaggaact ggcggggcaa
     2881 agcgtcaaag ggcagggttc gggcaaaaca agggtggcaa tccaaagcat gagaaccact
     2941 cgaaactacg aacggtccgt acgggcggtg cgtttttgcg ggcaaagata cgggtaaaaa
     3001 tagcaatatt cgcgcacagc cgactggcac ccacagagtt atcaaataag caaaaaacct
     3061 tactaactac gaagtgtgag gaattatacg ttttaattgt gacctgtcaa gaacattatt
     3121 aactatttcg caaaaatttc gtgacggctt cactcgcccg agcgggcgtt ggcaagacga
     3181 tgggcctggc ggcgcacagt ctcggacacg ttgcggttct gcgaaagggt caggaggtcc
     3241 ttcgtgcgga tgcgcaggag gatgttcatt gccgttggaa tcggcgtctt gggattgcgc
     3301 gcgaggttgt gaattatcga gtagttgcgc gcccaacttc tgttcatcgc aatcagacgc
     3361 agcacctcat ccgacacggt ccgcatcgcg gcgacgtttt caatttcctg ttcggtgatg
     3421 cgcgggttgt tcaccacggc cgaacagacc accttgtttg aatcgcgaat caggatgctg
     3481 cgtgcttcac ggtcgccttt cagcgcgagc ttcacgcggt cctttgtgtt catgaacatg
     3541 atgcggcgaa tcagcgaaac gcgttcggcg ttgacttcgc tgccggtctc gagccgctcc
     3601 tgttcgagga tgcgctgaac gttggcagtg atttcttccg cggtttcgga aatgagatcg
     3661 gcgtaacgtt cagccggcaa ccagctatcg tcgaggtcgt cgtcggagac ttcgatgtgc
     3721 tgagcgatca cccacgcgtc gtcaaaactg agttcgccgg ttgctgttgt taattccgct
     3781 gtttcgaaaa actcggccgc ggcagtttga ccgcgcgcgc gcaactcgtc tgcgatctgg
     3841 cgtgcgccgc gttctttctc gaaaaactct ttgcgtgttt cgcgcgcgcg gcgttcagct
     3901 tcacccgtgc gtgcggggtt cgcgaggatg gcgtcgatca actccggcgc acggaccagt
     3961 cgttgctggt tgatggtgat cagttcgagc aacgaaccgt gtgccgttga agcggcgagt
     4021 tttgcgagtg cgtcgtcggg cgttttcgga ttgaggatcg cggcttcgta gatgttcagc
     4081 gttgcatcgg gttgtgtggc gagatacgca agcacgctcg gcggcgtgtc gtcggcggtt
     4141 gccgcgacga ggagatcttc gggagtttca gctttgagag tttcttttgc agcggtggcg
     4201 agctcggcgt cgttgccttc ggcgagggcc acgaggatct ccagcagctc gtgttgctgg
     4261 agcggcaaca ttccgcgagc agcggcaagc cgcgccggtt gtggcgcggc gccgctgatg
     4321 atcgcttgaa caacgggatt agttgagctc aatcaggcgt ttatgccgtg acacttcttg
     4381 tatttcttcc ctgaaccgca cggacaggcc tcgttccgtc cgaccttcgg ctgatcgcgg
     4441 accaccgtct taattttgcc gtcctcttgt ccagccggag tcgcgccctg atttggacca
     4501 gtgaaggtca gcggagacgg acgaagtggc gcgcgacggc gaaccgtttc gggtggctcg
     4561 ccagacacga tttgcaggtt gaacagcgaa cgaatcgtgt tcgtgtcgat gcggtcgagc
     4621 atctcctgga acatgtcgaa gctctgcttc ttgtactcaa caagcggatc cttctggccg
     4681 taaccgacca gcccgatgcc ctgcttcagg tggtccaacg agagcaggtg gtccttccac
     4741 tgcgcgtcga tgatgttgag catgatgatg cgctcgtaag tgcgcatcgc ttcgggaccg
     4801 atctgctctt ccttgcgttt gtacttctct ttcagccgtt cccagatcgt gtcgacaact
     4861 tcctgcgacg tgtaacgctg cagatcgaga ccttcgctat cgacgtcgaa gtcgtaaatc
     4921 gtcttgatct gaatcttgta gttttcgacg tcccaatcgt ccggcgaaat atccggattc
     4981 aggtattgcc gcgtcaggtc tgacagcagg tcgtaagcca cacccgcagc cggcggatcg
     5041 cccatcaggt actcacgctg atcgggctct tccatcaact gccggcgcaa gccgtagatc
     5101 gtctcgcgtt gcttgttcat gacgtcgtca tactcaagca ggtgtttgcg agcttcgaag
     5161 ttgcggcctt caaccgactt ctgcgcggcg gcgatacgct tcgagaccat gcccgattcg
     5221 atcgccacgc ccttttccat gccgagccgt tgcatcaacg ctttgacttt gtcgcccgcg
     5281 aagatgcgca taagatcgtc ttccaacgac aggaagaaac gtgacgaacc cgggtcgccc
     5341 tggcgtccgg cacggccacg aagttgattg tcgatgcgcc gcgattcgtg acgttcggtg
     5401 ccgatgatgt gcagcccgcc gaggccgact acttcattgt gctcgtcttc gacgattcgc
     5461 ttcgcgcgtt cgtaagcgat cttccactgc tcgtccgtcg cttcgtcagg atcgatctct
     5521 tccttcttca gaaactcgcg cgccatgaaa tcgggattgc cgcccaacag gatgtcggta
     5581 ccgcggcccg ccatgttggt ggcgatcgtc accgaaccct tgcggcctgc ctgggccacg
     5641 atctccgctt cccgctcgtg atacttcgcg ttcagcacgt tgtgcggcac tgcggctttc
     5701 gacaaccgcc gcgcgatcaa ttcagagttc tcaaccgaga cggtaccgac gagcgccggc
     5761 tggcctttct cgtgacaatt cttgatctct tcgacgaccg cgtcccactt ctcgggcagc
     5821 gtgcgataga tcacgtccga attgtcggta cgaaccatcg gcatgtgcgt cgggatcacg
     5881 atcacgtcga gtttgtaagt cgaggcaaat tccgccgctt cggtttcggc cgtaccggtc
     5941 atgccggaca gcttctcgta aaggcggaaa taattctgca gcgtgatggt cgcgagcgtc
     6001 tggttctctt tctcgatctc gacgccttct tttgcttcaa ccgcctggtg caaaccgtct
     6061 gaccagcggc ggcccttcat caagcggccg gtgaagtcgt cgacgatgat aacttcgccg
     6121 tcctggacca cgtactggtg atcgagtttg taaagcgtgt gggccttcaa cgcctgctcg
     6181 acgcagtgca gcaattccat gttcgaagga tcgtagagat tgccgacgcc cagcaggcgc
     6241 tccgctttct ccacaccttc ttcggtcaac actgccgtgt gcgctttttc atcgacgacg
     6301 tagtcgccgg tctttttgcc gtcgacgtct tcgcccttct tcaggtgcgg aatgatcgcg
     6361 tcggcgtttt tgtacttgtc agtggcttcg tcggatggtc cggaaatgat tagcggcgtg
     6421 cgcgcttcgt cgatcagaat cgagtcgacc tcgtcgacga cggcgaagta atgaccacgc
     6481 tgtacacaag tggtgaggtc aaacttcatg ttgtcgcgca gg
//
LOCUS       DASWTX010000734         1998 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_98298, whole genome shotgun sequence.
ACCESSION   DASWTX010000734 DASWTX010000000
VERSION     DASWTX010000734.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1998)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1998)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1998
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98298"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..395
                     /locus_tag="VGD38_11150"
     CDS             <1..395
                     /locus_tag="VGD38_11150"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY0728619.1"
                     /translation="SACRAAVPVMKQQKFGRIVIISSTAGQRGEAGFSNYAASKGGQI
                     SFMKSLASELGPFGINVNCVAPGWVTTDMTSATLADRTRMESILKEIPKGRVATPEDI
                     AGPVVFLCSAWADHITGDTISVNGGSVL"
     gene            413..1627
                     /locus_tag="VGD38_11155"
     CDS             413..1627
                     /locus_tag="VGD38_11155"
                     /inference="COORDINATES: protein motif:HMM:NF018743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1343 domain-containing protein"
                     /protein_id="HEY0728620.1"
                     /translation="MTLTLEREKAKNSVQHVELGLERLLQDQIVDLKGARIGLICNQA
                     SVDHGFHHAADLLHQHPDIDLRALFGPQHGIRGDVQDNMIETAHGMDRKTNLPVHSLY
                     SETREPTEDMLRDVDVLVFDMQDVGCRIYTFVYTLANCMRAAVQFGKRVVVCDRPNPI
                     NGVSVAGNILELEYASFVGQFPLPTRHGMTVGELARMFNDHFSIGCEMEIVPMNGWRR
                     EFWHDDTDAPWVLPSPNMPTLDSATVFPGAVHFEGTQVSEGRGTTRPFELIGAPYIDP
                     DDYADRLNALNLAGVFFRSCAFQPTFQKHAGVTCGGVQIHVTDRDVFEPVFAGIAMVK
                     LIHDMYPNEFRWKEPPYEYVYDKNPFDVIAGTNKIREAFEQGVDLDAIAETWKRPLLE
                     FKQLREPFLIYK"
     gene            1751..>1998
                     /locus_tag="VGD38_11160"
     CDS             1751..>1998
                     /locus_tag="VGD38_11160"
                     /inference="COORDINATES: protein motif:HMM:NF042755.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6677 family protein"
                     /protein_id="HEY0728621.1"
                     /translation="MVKSERLEVDLVERAPGSAWLIGLSAWFIPGSGHLILRKWGRAA
                     LMGGVVWLCFFLGMAMGGHMFDLTTGQGSSVWLQVPPM"
BASE COUNT          442 a          508 c          613 g          435 t
ORIGIN      
        1 ggtcggcttg tcgcgcggca gttccggtga tgaagcaaca gaagtttgga cgcatcgtta
       61 tcatcagctc aacggcaggg cagcgcggcg aggccggctt ttcgaattac gctgcttcga
      121 aaggcgggca gatctcgttc atgaagtcgt tggcgagcga gttgggacct tttggaatca
      181 acgttaactg cgtggcgccg ggctgggtta ccaccgacat gacaagcgcg acactcgcag
      241 atcgaacacg catggaatcg atccttaaag agattccgaa gggtcgagtc gcgacgccgg
      301 aagacatcgc cggcccggta gtttttctgt gtagtgcgtg ggccgatcac atcacgggcg
      361 acacgatcag cgtgaacggc ggatcggttc tataaatcgg agaagctgaa gtatgacctt
      421 aactctcgaa agagaaaaag cgaagaactc ggtgcaacac gtagaactcg gacttgagag
      481 attacttcaa gaccagatcg tcgacttgaa aggcgcgcgt atcggtctca tttgcaacca
      541 ggcatccgtt gaccacggtt tccatcacgc ggcggacctt ctgcaccagc atccggacat
      601 cgacctgcgc gctttgtttg gtccacaaca cggcatccgc ggtgacgtgc aggacaacat
      661 gatcgagacc gcgcacggca tggatcgcaa aaccaacctg ccggttcatt cgctttacag
      721 tgaaacgaga gaaccaaccg aagacatgct gcgcgatgtg gacgtgctcg tcttcgacat
      781 gcaggacgtc ggctgccgca tctacacgtt tgtttacacg ctcgcaaact gtatgagagc
      841 ggcggtgcag tttggaaaga gagtcgtggt ttgcgatcgt cctaatccga tcaacggcgt
      901 cagcgtcgcg gggaacatac tcgaacttga atatgcgtcg ttcgtcggtc agtttccgtt
      961 gcccacgcgt catggaatga ctgtcggcga gctcgcgcga atgttcaacg atcactttag
     1021 cattggctgc gagatggaga tcgtgccgat gaatggctgg cggcgcgagt tctggcacga
     1081 cgacaccgac gcgccgtggg tactgccttc gccaaacatg ccgacgctcg attcagcgac
     1141 agtgtttccg ggcgcggtcc atttcgaagg cacgcaggtg tcagaaggaa gaggaacgac
     1201 acgaccattt gaattgatcg gcgcgcctta catcgatcct gacgactacg cggatcgatt
     1261 aaacgcgctc aacttggcgg gcgtgttctt tagaagctgc gcgtttcaac cgacttttca
     1321 gaagcatgcg ggcgtgacgt gcggcggcgt gcagattcac gtcaccgatc gcgatgtatt
     1381 cgaaccggta ttcgcaggca tcgcgatggt gaagctaatt cacgacatgt acccgaacga
     1441 gtttcgctgg aaagagccgc cttatgaata cgtctacgac aagaatccct tcgacgtgat
     1501 cgcgggaacg aacaagattc gcgaagcgtt cgagcagggc gtcgatctcg acgcgatcgc
     1561 ggagacgtgg aagcggccgc tgctcgagtt caagcaactt cgcgaaccgt tcttgatcta
     1621 caaatagcta aggtatttag tcagaggtcg tcatgccgac ggctaaagtt aatagtgagc
     1681 ttgcgcgttt tgcgagcggc gtcatcttaa ggtaaaacgt taatcgtctt catcagcatg
     1741 gaggagtgat ttggttaagt cggaaaggtt agaagtcgat ctggtcgagc gggcgccggg
     1801 gagcgcgtgg ctcatcgggc tctcggcgtg gttcataccg ggcagcggtc atttgattct
     1861 gcggaagtgg ggccgcgccg cgttgatggg tggcgttgtt tggctgtgct tcttcctggg
     1921 catggcgatg ggcggacaca tgttcgatct gacaaccggg caaggttcgt ctgtgtggct
     1981 tcaggtgccg ccgatgat
//
LOCUS       DASWTX010000735         6479 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_295301, whole genome shotgun sequence.
ACCESSION   DASWTX010000735 DASWTX010000000
VERSION     DASWTX010000735.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6479)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6479)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6479
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295301"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..790)
                     /locus_tag="VGD38_11165"
     CDS             complement(<1..790)
                     /locus_tag="VGD38_11165"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0728622.1"
                     /translation="MPPALRVESVSKQYRIYDRPVDRLKESVTRGRWKTHREFWALHD
                     VSFEIEAGTTTGIIGPNGSGKSTLLQIITGTLEPTHGTVWHEGRIAALLELGAGFNPE
                     FTGIENIFMNASLLGLSKAETERLLPEIASFAEIGAFIHQPLKTYSSGMYIRLAFATA
                     IAVSPQILIIDEALSVGDAVFQHRCTRRIKEMQEAGTTILFVSHDPGAIRALCSRAIL
                     LNGGRMEADGPPADVLDRYQKVIMAAEAAYAEAQLGTEKTTDSSV"
     gene            complement(795..1772)
                     /locus_tag="VGD38_11170"
     CDS             complement(795..1772)
                     /locus_tag="VGD38_11170"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016509474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HEY0728623.1"
                     /translation="MTKRALITGITGQDGSYLAEYLLNLGYEVHGLVRRVALETPEIR
                     FSRISHLLDRVTLHPASLESYASIFHVLSKYDFDECYHLAAQSFVAESFADGFSTMNM
                     NINGTHHVLAALREVRPKCRFYFAGSSEMFGNATEVPQTESTPFQPRSPYGISKLAGF
                     HLTRNYRDAYGLFCLSGILFNHESPRRGLEFVTRKTTSTVARIKLGLASELRIGNLDA
                     RRDWGHAVDYVRAMHAMLQQREPDDFVVATGETHSVRELCELAFAEVDLDWQEFVKVD
                     ELYYRPTEVDQLIGDASKARRVLEWEPTYTFHELIKEMVASDLRALDLQ"
     gene            2030..4414
                     /locus_tag="VGD38_11175"
     CDS             2030..4414
                     /locus_tag="VGD38_11175"
                     /inference="COORDINATES: protein motif:HMM:TIGR03437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728624.1"
                     /translation="MTSLPNSAFNLTLGDMSANGRFVVFTSTADLSTEKGLDGRNNAD
                     GNREIFLADYAQRRIFQITNTRNVPNPTPTPSPTPTPSPTPTPTASPTPTPTPTPLPA
                     DPTAAKIEIVNRGPMISLAPQLVEGQRFYVIVFSSNAPTPGNFNGTEGTLAQDANTEI
                     WIYRVPAVVDVDLTLGADLPRSDLALGTFTQVTNTPASRLPTAGVPGTTTTAPKAPFF
                     ADDNREATINDSGTILAFISTRNLVPGVGNTDANPELFLFNIGAGTFSQGTNTQDATP
                     GIGFIFQSNPMLSADGSVVSFASSANLAANNADGNAEIFIANFSGSAVSNIRQVTRTL
                     NGPNNTNVLSPGRRLSRDGGFIVFESLATDPKANTTPSNSVLGSFVYNVSTDTFVEVG
                     PRPVQFPDSTRFPTFTDYNSSLTPGTVVFASALNFRPNGTFPAEAQDSEGMNPQRRTQ
                     LFSTPLPTSTSQTFTRLTNVPATFIFAGILPVTSETRTRSVFLLGGGDLGGGNGDSSL
                     ELFYLLTPQVTAQSNATLSFFTGASNMPVAAATPVPSPTPSPTPTPSPSPGAPFALAP
                     GELTIVRSTVALAPSNAVACPLMTSICASETQRAPALPIELNGVSVSVNGAAAGLYFV
                     GNAEKQINFVMPPGTAVGLATVVVNILDAGANTDTQLRGFVQITAGQPDIFSSTGDAN
                     GRAVARNATTLTAEPFDVTTNGNPTVIQLTVTGVRFAARTEITVTVGTTVITGEGIVS
                     VMPNRENHGFDLINFALPASLAGAGDVPVQVSFTRSGVTTVSRPAATAPRITIN"
     gene            4546..>6479
                     /locus_tag="VGD38_11180"
     CDS             4546..>6479
                     /locus_tag="VGD38_11180"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF012630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031012 - extracellular matrix [Evidence
                     IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="matrixin family metalloprotease"
                     /protein_id="HEY0728625.1"
                     /translation="MQYPAAIVASVALFLALGAGERLETRDSSEIDPIAPQTVKRIHW
                     PKRTIAIAFSNSLLSPGANIKPDSDVVGAARRALGRWSSLAHINFIVTWSPATSVSPA
                     DSGDGVNLVTIAVTPENEQFNSDSTTGRTRVFFNPETGGIVEADISINPRPRAEDGTA
                     LQFSTDGTPGTYDLEATFTHEIGHLLGLEHSAVLASTMQSRQAFNGTFGLPALTERTL
                     SEDDRQKVRSLYGPGQQRLGRIEGRLIDNRTQGVLAPLSGVNVWAENAATGRVMASDV
                     TAADGSYELEGLEPGQYRVMVAPAAGENGAKFRSFEMSNQVVVKANNATPLSSNMVPA
                     QAATLNPKLIGLNAELSTVALPLEPGKRVKLYLAGEGVDQVPGTSITINSPFFTIDAA
                     TLTREQMSTPVPVISVEVQVAPYVPFGDYTVRLQSNSGETAYVPGAITIDPAANAALS
                     NPVDDFRFFINQQYLDLTGRDADPVVLEKLSGQLTQCGGRVECLRSRRVDVSTAVLAE
                     NDLPGTGVFLHGLYTVGLGRRPKFAEFETDRNALMSQSGEVERGRMAFILAFVQRAEF
                     KRRYAPAMKASEFVDAVLLSLMQNSSVDLAVMRTELIALADEPAAGRATVLARIIGQQ
                     SVIDAQYHHAFILSHYFGYLR"
BASE COUNT         1296 a         2000 c         1833 g         1350 t
ORIGIN      
        1 gcactgaaga atccgtcgtc ttctccgtcc caagctgcgc ttccgcgtac gccgcttccg
       61 ccgccatgat caccttctga taacgatcca gcacatccgc cggtggtcca tccgcttcca
      121 tgcgcccgcc attcaacagt atcgcacgcg aacacagcgc ccgaatcgca cccggatcgt
      181 gcgacacaaa caagatcgtc gtcccggctt cctgcatctc cttgatccgg cgcgtgcaac
      241 gatgctgaaa caccgcatcg ccaaccgaca acgcctcgtc aataatcaag atctgcggcg
      301 acaccgcgat cgccgttgca aacgcgagcc ggatgtacat gccgctcgaa tacgtcttca
      361 gcggctgatg aataaacgcg ccaatctccg caaaactcgc gatctccggc aacagccgct
      421 ccgtttcagc tttcgacaac cccagcagcg acgcgttcat aaaaatattc tcaatcccgg
      481 tgaactccgg attgaatccc gcgccgagct cgagcaacgc cgcgatgcgt ccttcgtgcc
      541 agacggtgcc gtgcgtcggt tcgagtgtgc cggtgatgat ttgcagcagg gtggatttgc
      601 cggagccgtt tggaccgatg atgcccgtcg tcgtgcccgc ttcgatctcg aaactgacgt
      661 cgtgcagcgc ccagaattcg cgatgcgtct tccagcgccc gcgcgtcacg gattctttca
      721 gccgatcgac aggccggtcg tagatccggt actgcttgga aacactctcg acgcgtaagg
      781 ctggcggcat agttttactg taagtccaaa gcccggagat cggaagccac catctctttg
      841 atcagttcgt gaaaggtgta cgtcggttcc cactccaaca cacgccgcgc tttcgacgca
      901 tcgccgatca actggtccac ttcagtcggc cggtagtaaa gctcgtcgac tttcacaaac
      961 tcctgccagt ccagatcgac ttccgcaaaa gccagctcgc acagttcacg aacgctgtgc
     1021 gtctcaccgg tcgcgacaac aaaatcgtcc ggctcgcgct gctgcaacat cgcgtgcatc
     1081 gcgcgcacgt aatcaaccgc gtgaccccaa tcgcggcgcg cgtccaggtt tccaatccgc
     1141 agctctgatg cgagcccgag cttgatccgc gcgaccgtgc tggttgtctt gcgtgtgaca
     1201 aactccagtc cgcgccgcgg gctttcgtgg ttgaacaaaa tcccgctgag acaaaataga
     1261 ccataagcgt cgcggtagtt tctggtcaga tgaaacccgg cgagtttgct gattccgtac
     1321 gggctgcgtg gctgaaaagg cgtgctctcg gtttgcggga cctcggtggc gttgccaaac
     1381 atctcgctcg aaccggcaaa ataaaatcgg cacttgggcc gtacctcacg caacgcggcg
     1441 agcacgtgat gcgtcccatt gatgttcata ttcatcgtcg agaagccgtc ggcgaagctt
     1501 tccgccacga agctctgggc ggcgaggtga taacactcgt caaagtcgta cttgcttaat
     1561 acatggaaga tgctggcgta gctttccaga ctcgccggat gcagcgtcac ccggtccagc
     1621 agatgggaaa tacggctgaa tcgaatctcc ggcgtttcca gtgccacgcg ccggaccagg
     1681 ccatggacct cgtagcccaa attgagaaga tattcggcca gatagcttcc atcctggccg
     1741 gtgatgccgg taatcagcgc tcgtttggtc acgttgctga tttgaccaca taatccgcag
     1801 attgcacaga tgcttgcgat accgcagggg ttctgcttag aatgaccgct cttcagctcc
     1861 ccgaagggca tctaatctgc tgtttatcta cgtctttatc gcggaggatt tcgtgaagca
     1921 agttttctgg ttcgtgtgcg ccagtatcgt gtgtattttc gccgcggggt cgctatcctc
     1981 cgttgcggct caaactacga ccccaactcc cgatccttat gccgctcaat tgacttcgct
     2041 tccgaacagc gcattcaacc tgacgctcgg cgacatgtcc gctaacggcc ggttcgtcgt
     2101 tttcacttct accgcagact tgtcgacgga aaagggtttg gacggtagaa acaacgccga
     2161 cggcaaccgc gagatcttcc tggccgatta cgcgcagcga cgcattttcc agattaccaa
     2221 caccaggaac gtaccaaatc cgacgccgac tccatcgccg acaccgacac cgagtccaac
     2281 gccgactccg acagcaagtc cgacaccaac accgactccg acgccgttac cagcagatcc
     2341 cacggccgcg aagatcgaga tcgttaaccg cggaccgatg atctcgttgg cgccgcaatt
     2401 ggtcgaaggc cagcgtttct acgtgatcgt cttcagttca aacgcgccga ctccgggaaa
     2461 tttcaacggc accgaaggca cactcgcgca ggacgccaac accgagatct ggatctatcg
     2521 cgtgccggca gtcgtcgatg tggatttaac actgggagca gatctaccgc gcagcgattt
     2581 ggccctcggc acgttcacgc aagtgacgaa cactcccgcg agccgtctgc caactgcggg
     2641 cgttcccgga acgacaacga ctgccccgaa agcgccgttt tttgccgacg acaaccgcga
     2701 agccactatt aacgattccg gaaccattct cgcttttatc tcgacgcgca atcttgttcc
     2761 cggcgtcggc aataccgacg ccaatcccga gctcttcctt ttcaacatcg gcgcgggcac
     2821 ttttagtcag ggcacaaaca cacaggacgc aactcccgga atcgggttta tctttcaaag
     2881 taacccgatg ttatctgccg atggatcagt agtgtctttt gcgtccagcg ctaatcttgc
     2941 tgcgaacaac gcggacggga acgccgagat ctttatcgcg aacttcagtg gttcggccgt
     3001 cagcaatatc cgccaggtta cgcgcacgct gaacgggcca aacaacacga acgttttgag
     3061 tcccgggcgg cgtttgagcc gcgacggcgg cttcattgtc ttcgaatcac tcgcgaccga
     3121 tccgaaagcg aatacgactc ccagcaactc ggttctcggg tcttttgtgt acaacgtctc
     3181 gacggatacg ttcgttgaag tcggcccacg cccggtgcaa ttcccggact ccactcgctt
     3241 cccgacattc acggattaca actcttcgct gacgccgggc accgtggttt tcgcgtctgc
     3301 tttgaacttc cgtccgaatg gcactttccc ggccgaggcg caggacagtg agggaatgaa
     3361 cccgcagcga agaacgcagc tcttctcgac gccgttaccg acgtcaactt cgcagacttt
     3421 cactcggctg acgaacgtgc cggccacatt tattttcgcc ggcatccttc cggtaacgag
     3481 cgaaacgcgc acgcgttcgg tgttcctcct cggcggtggc gatcttggcg gtggcaatgg
     3541 cgacagttca ctcgagttgt tctacctgtt gactccgcaa gtaacggcgc aatcgaacgc
     3601 gacgctttcg ttcttcacgg gcgcgagtaa catgccggtc gctgcggcga ctccggttcc
     3661 gagtccgact ccgagcccaa caccgacgcc gagcccgtcg cccggtgcgc cgttcgcttt
     3721 ggcgccgggt gagttgacga tcgttcgctc gaccgtcgca cttgcgccgt cgaatgccgt
     3781 ggcgtgtcct ttaatgacgt cgatctgtgc ttcagaaaca cagcgcgcgc ctgcgttgcc
     3841 gattgagttg aacggagttt ctgtttccgt gaacggcgcg gctgctggtc tttatttcgt
     3901 cggcaatgcg gagaaacaga tcaacttcgt tatgccgccg ggaacggcgg tgggccttgc
     3961 aaccgttgtc gtcaatatcc tcgacgcggg cgcgaacact gatacgcaat tacgtggttt
     4021 cgtgcagatc actgccggcc agccggatat cttcagtagc accggcgacg caaacggccg
     4081 cgcggtggct cgaaacgcca ccacgttaac tgccgaaccg tttgacgtca caaccaacgg
     4141 caatccgacg gtgattcagt tgaccgtcac tggtgtgcgc tttgccgcgc gcaccgagat
     4201 caccgtgacc gtcggcacga ctgtgattac gggcgagggg atcgtctccg tcatgcccaa
     4261 tcgggaaaat cacgggttcg acttgattaa cttcgctctg ccggcatctc tggctggcgc
     4321 aggcgacgtg ccggtacagg tttcgtttac acgcagcgga gtcaccacgg tcagtagacc
     4381 ggcggcgacc gcgccacgga taacgatcaa ctaaacctcg tttccgcagt ctcagttttt
     4441 tacgagcatg gggggcaaag catggtacga tgcgcccgtt ggccggcccc ccagccccaa
     4501 ctcacgctgc tttgctgaaa acttgtcctc tccaggaagc acttgatgca atatcctgcg
     4561 gccatcgtcg cgagtgtggc tttgttcctg gctctcggcg ctggagagcg tctggagacg
     4621 cgcgactcct ctgagataga tcccatagca ccgcaaacag tgaagcgaat ccattggccc
     4681 aaacggacca tcgcgatcgc tttttccaac tctttgctga gtccgggcgc gaatatcaaa
     4741 ccggacagcg acgtcgtcgg cgccgcgcgg cgcgcgctcg ggcgctggtc cagtctcgca
     4801 cacatcaact tcatcgtgac ctggagcccg gccacgtcgg tcagtccggc tgacagcggc
     4861 gacggcgtga atctcgtgac gatcgcagtc acgcccgaaa acgaacagtt caattccgac
     4921 tcgaccaccg gccgcacgcg cgtctttttc aatcccgaaa ccggcggaat cgtcgaggct
     4981 gacatcagca tcaatccacg cccgcgcgcc gaagacggca ccgcgttgca gttttccact
     5041 gacggcacgc cgggcactta cgatctcgaa gcgactttca cgcacgagat cggccacctg
     5101 ctcgggctcg aacactcagc cgtgctcgcg tccacgatgc agagccggca ggcgttcaac
     5161 ggcacttttg gtttgcccgc gttgaccgag cgcacgttga gtgaagacga ccggcagaag
     5221 gttcgcagtc tgtatgggcc gggacaacag cgtctcggcc gcattgaagg ccgtttgatc
     5281 gacaaccgca ctcagggcgt gctcgcgccg ttgagtggcg taaacgtttg ggccgagaac
     5341 gcggcgacgg gccgcgtgat ggcgagcgac gttacggctg cggacggctc ttacgaactc
     5401 gaaggactcg aacccgggca gtatcgcgtg atggtcgcgc cggctgctgg tgagaacggc
     5461 gcgaagtttc gcagttttga gatgtcgaac caggtcgtgg tgaaggcgaa caacgcgacg
     5521 ccgctcagtt cgaacatggt gccggcgcag gccgcgacac tcaatccgaa gttgatcgga
     5581 ctcaacgccg aactctcgac cgttgcgctg cctctcgaac cgggcaaacg cgtgaagctt
     5641 tatctcgctg gagaaggtgt cgatcaggtg ccgggcacga gcatcacgat caactcgccg
     5701 ttcttcacga tcgatgcggc gacgctcaca cgcgaacaaa tgtctacgcc ggttccggtg
     5761 atcagcgtcg aggttcaggt tgcgccgtat gtgccgtttg gcgattacac ggttcggctg
     5821 caatcaaact ccggtgaaac tgcgtacgtg ccgggcgcga tcacgatcga tccggcggcg
     5881 aatgcggcgc tgtcgaatcc cgtagacgac ttccgattct ttattaatca acagtatctc
     5941 gacctcaccg gacgcgacgc cgatccggtg gtgctggaga agctgagtgg tcagttgacg
     6001 cagtgtggcg gcagggttga gtgcctgcgt tcgcgtcgcg tcgatgtttc gaccgcggtg
     6061 cttgcggaga atgatctgcc gggcacggga gtttttctgc acgggcttta cacggtggga
     6121 ctcgggcgtc gtccgaagtt tgcggagttt gagactgacc ggaacgcgtt gatgagtcag
     6181 agcggggaag tcgagcgcgg ccgcatggcg ttcattctcg cgtttgtgca acgggctgag
     6241 ttcaaacgcc gttacgcgcc ggcgatgaag gcgtcggagt ttgtcgatgc ggtgctgttg
     6301 tcgctgatgc aaaacagcag tgtggatctg gcggttatgc gcaccgagtt gatcgcgttg
     6361 gcagacgagc cggctgccgg gcgcgctacg gtattggcgc gaatcatcgg gcagcagtcg
     6421 gtgatcgacg cgcagtacca ccacgcgttc atcctgtctc actattttgg ctacctgcg
//
LOCUS       DASWTX010000736         5507 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_247424, whole genome shotgun sequence.
ACCESSION   DASWTX010000736 DASWTX010000000
VERSION     DASWTX010000736.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5507
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247424"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1686
                     /locus_tag="VGD38_11185"
     CDS             <1..1686
                     /locus_tag="VGD38_11185"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein"
                     /protein_id="HEY0728626.1"
                     /translation="GMIDDSDIFAIDINPRDPNHVIASACSGIYESKNAGENWRKVQG
                     IPSQSRRTRAILQHPSVPGIVFAGTTEGFWRSDKGGDADSWMVTTSRQLEINSIAVHP
                     SRPDMIYIGTNNYGIMISTDGGKSFTPSNGGFSGRFAYAILPDRETPNRIYASTINTA
                     TGGGFFFVSNDNGETWRPSMRSMPSRLITYAIVQDTRNANLLYLGTNLGVYRSIDRGA
                     NWAPVWSPTNPDEKKKATAKKGAKKPAATTARGRRPAAANKDSIMQAQQALRTNGYQL
                     GEPDGKMGKATIAAVKKFQTDRHLPVTGKLDALTLGALGVGGPGTGGGQVDVAKANVI
                     LADAVNALVHTVDPETQQPGYLAATNTGLYRSLDPSKGWQKLSYGSFDPRTTCVSTNL
                     KTPETIWVGTPSSGVLVSNDSGNTWQQVQGIPTDMPVNTVVQDPQRPANVYVGTKQTV
                     FISQDGGKTWKRRGGNLPFGDFTSILVNPRNSDEIFVGNAYQISEVGGGVYRSIDGGD
                     TWTRIDPKARRLPSQRIWALAFDPHDQDVLFVGSHSAGVYVVPRTSAVLSSAQ"
     gene            2035..3882
                     /locus_tag="VGD38_11190"
     CDS             2035..3882
                     /locus_tag="VGD38_11190"
                     /inference="COORDINATES: protein motif:HMM:NF004952.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEY0728627.1"
                     /translation="MSSEQPKLNDSEADNNQTTSGKAEPQPQRTTMTSQTGTGTATQT
                     DVDDADDSRAAGDVDFGQLLDQFEQEQATLEEGEVVRGTVVGLSERGVVIDFGYKSEG
                     IVNPAEFTENGQLTVKAGDEVEVLVKSMETADGLPVLSRADAVRMKAWDDLEKAYREG
                     SSVKGRVVDRIKGGLRVDIDGIAAFLPGSQVDVRPVRNLDSLRNQIIEAKVIKLNRKR
                     SNVVLSRKSVIEQENTGRKDQTLMGIEEDIVVEGQIKNLTDYGAFVDLGGVDGLLHVT
                     DMSWGRLQNPNELFKVGDTIQVKVLKFDRERERVSLGYKQLLPDPWSSVEERFPVGTR
                     ISGRVASVADYGAFVELEPGVEGLVHVSEMSWSKRVKHPSKVVNPGDMVEVEVLSVDP
                     KARRISLGMKQVQENPWQTLHERYQVGTRVHGRVRNLTDFGAFIEIEDGVDGLVHVSD
                     ISWSRRIKHPSEVLKKGQEIDAVITSIDSENRRLSLSIKDLEPNAWEKFTTEHKPGDV
                     VRGKVARFANFGAFVELDDNLEGLCHISELSEERVAKPEDVVQLGQELDFKILRIDPD
                     TKKIGLSARAVGKDEPIIDTKIYSSEAGGGMASLGELADFGLKAESNDE"
     gene            4012..4278
                     /locus_tag="VGD38_11195"
                     /pseudo
     CDS             4012..4278
                     /locus_tag="VGD38_11195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015900354.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
     gene            4398..4883
                     /locus_tag="VGD38_11200"
     CDS             4398..4883
                     /locus_tag="VGD38_11200"
                     /inference="COORDINATES: protein motif:HMM:NF023395.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HEY0728628.1"
                     /translation="MQRLWSPWRSKYIASGVDSQKEGCVFCSIAADPDGDAANFVLHR
                     GEHAFVLLNLYPYITGHLMIVPYLHTSEFDSVAKEITDEMMDLAKRSQTALREVYSPS
                     GFNMGMNLGSAAGAGIADHIHIHVLPRWSGDTNFMTTVGESRVIPEALEVTYQKLKEK
                     F"
     gene            complement(4880..>5507)
                     /locus_tag="VGD38_11205"
     CDS             complement(4880..>5507)
                     /locus_tag="VGD38_11205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728629.1"
                     /translation="QGDNPHDRLRPYQSAKIITSHVTYGSRLAKEIGLPQTIADFIPQ
                     QHGTRTLHYFLRKAQAQAKPNETVDEADFRYPGPKPQFKEAAIMMLADSCEAAARSLA
                     RADPENIRAIVVKIVDAIVSDGQLDQCDITLQELTTIREAMISALTAIYHARIDYPGF
                     NPPPAGPLPAGDIDSEERGVSYSKPSEVPMSRGGEVEDEALPRKVGKR"
BASE COUNT         1220 a         1580 c         1634 g         1073 t
ORIGIN      
        1 ggcatgatcg acgattcgga catcttcgca atcgacatca atccgcgcga tccgaatcac
       61 gtgatcgcgt ccgcgtgcag cggtatttac gagagcaaga acgcaggcga gaactggcgc
      121 aaggtgcagg gcatcccctc gcaatcgcgc cgcacccgcg cgatcctgca gcacccttca
      181 gttccgggca tcgtgttcgc cggcacgacc gaaggcttct ggcgttcaga taaaggcggc
      241 gatgccgact cgtggatggt cacgacttcg cgccaactcg agatcaactc gatcgccgtg
      301 catccgtcgc gtcccgacat gatttacatc gggaccaaca actacggcat catgatctcg
      361 accgacggcg gcaaatcgtt cacgccgagc aacggcggat tcagtggacg atttgcttat
      421 gcgattcttc ccgatcgtga aacgccgaat cgcatttacg cttcaaccat caacacagca
      481 accggcggcg gtttcttctt cgttagcaac gacaacggcg agacgtggcg tccatcgatg
      541 cgcagcatgc cgtcgcgttt gatcacctac gcgatcgtgc aggatacgcg caacgcgaac
      601 ctgctgtacc tcggaacaaa cctcggcgtc tatcgctcga tcgatcgtgg cgcgaattgg
      661 gcgcccgtgt ggtcgccaac caatcccgac gagaaaaaga aggccacagc gaagaagggc
      721 gcgaagaaac cagcagcgac gacggcgcga ggacgccgcc cggcggcagc caacaaggat
      781 tcgatcatgc aagcgcagca ggcgcttcgc actaacggct atcaactcgg cgaacccgac
      841 ggcaagatgg gtaaggcgac gatcgcggca gtgaagaagt tccagaccga tcggcacctg
      901 ccggtaaccg gcaagctcga tgcgctcact ctcggcgcgc ttggcgttgg cggccccggc
      961 acaggcggcg gccaggtaga cgtggcgaag gctaacgtca tcctcgcgga tgcagtgaac
     1021 gcgctggtcc acactgtcga tccggaaacg cagcaaccag gctatctcgc tgcgaccaac
     1081 accggtctct atcgcagtct cgatcccagc aagggttggc agaaactttc atacggcagt
     1141 ttcgatccgc ggacaacctg tgtttcaacg aacctgaaaa cacccgaaac catttgggtc
     1201 ggaacaccga gttccggcgt tctcgtttca aatgacagcg gcaacacgtg gcaacaggtt
     1261 caaggtattc cgactgacat gcccgtgaac acggtcgtgc aggatccgca acgtccggcc
     1321 aacgtttacg taggcacgaa acaaacagtc ttcatctctc aagatggcgg caagacgtgg
     1381 aagcgccgtg gcggcaatct gcctttcggc gacttcacca gcatcctggt caatccgcgt
     1441 aacagcgacg agatctttgt cggcaacgcg tatcagatca gtgaagtcgg cggcggcgtt
     1501 taccgcagca tcgacggtgg cgacacgtgg acacgcatcg atcccaaggc caggcgtttg
     1561 ccgagtcagc gcatctgggc gttggctttt gatccgcacg atcaggacgt gctgtttgtc
     1621 ggttcgcact ccgcgggcgt gtacgttgtt ccgcgaacca gcgccgtgct ctcctcggcg
     1681 cagtaacttc aacttttctt cccgcacgga cttgcgcgct gttgccttga catgcgctcg
     1741 cgcagacgtg tacattgccg ccctacccgg aaatcggcgg cgggtgtttg tcggaccaag
     1801 cggggtgact aaacggcagg gcggtaatcg aaactaatta gctcgacatt tccaaatcca
     1861 aacggctcgc ttcctcgcca gcttcaattc ccgacaacgc caaggtcaaa aatactgaca
     1921 gccgctgaac actgtctgcc agtcagcgaa gacctgcgct gattgttaca gtctagtgag
     1981 cgcgatatga tcgacccacg cgttgaaact tacccgggga ctacaggagt atgcatgtct
     2041 agtgaacaac ccaagctgaa cgacagcgag gccgacaaca accaaacaac ttccggcaag
     2101 gcggagcctc agccgcaacg aacaacgatg acttctcaaa ccggaaccgg aaccgcaacc
     2161 caaacagacg tcgacgatgc agacgattca cgcgccgcgg gcgacgttga tttcggacag
     2221 ctcctcgacc aattcgaaca agaacaagcg acgcttgaag aaggcgaagt cgttcgtggc
     2281 accgtcgtag gtctcagcga gcgcggtgtc gttattgatt ttggttacaa gtcggaaggc
     2341 attgttaacc cggcggagtt taccgagaac ggacaactca cagtcaaagc cggcgacgaa
     2401 gtcgaagtgc tcgtgaagag catggaaacc gccgatggcc tgccggtact ttcgcgcgct
     2461 gacgccgttc gcatgaaggc gtgggacgac ctcgagaagg cgtatcgcga aggctcaagc
     2521 gtcaaaggcc gcgttgtcga tcgcatcaag ggcggtctgc gcgtcgatat cgacggcatc
     2581 gccgcgttcc tgccgggctc gcaagtagac gtgcggcccg tgagaaatct cgacagcctg
     2641 cgcaaccaga tcatcgaagc caaggttatc aagctgaacc gcaagcgttc gaacgtggtg
     2701 ttgtcgcgca agtccgtcat cgagcaggaa aacaccggac gcaaagacca gacgttgatg
     2761 gggatcgagg aagacatcgt cgtcgaaggt cagatcaaga acctcaccga ttacggtgcg
     2821 ttcgttgacc tcggcggtgt cgatggtttg ttgcacgtca ctgacatgtc gtggggccgc
     2881 ttacagaatc cgaacgagtt gttcaaagtc ggcgacacca ttcaggtgaa ggtgctgaag
     2941 ttcgatcgcg aacgcgagcg cgtctcgctc ggctacaagc aattgctgcc cgatccgtgg
     3001 tccagcgtgg aagaacgttt cccggtaggc acgcgaattt ccggacgcgt cgcgagcgtt
     3061 gccgattacg gtgctttcgt cgagctcgag ccgggtgttg aaggattggt ccacgtttct
     3121 gagatgagct ggtccaagcg cgtgaagcac ccgagcaaag tcgttaatcc gggcgacatg
     3181 gtggaagtcg aagtgttgag cgtcgatccg aaagcacggc gcatcagtct cggcatgaag
     3241 caggtgcagg agaacccgtg gcaaacgctg cacgagcgtt accaggtggg cacgcgcgtt
     3301 cacgggcgcg tcagaaacct gactgacttc ggcgccttta tcgagattga agacggcgtc
     3361 gacggcctgg ttcacgtttc ggatatttcg tggtcgcggc gcatcaagca cccgagcgag
     3421 gtactgaaga aagggcagga gatcgacgcg gtcatcacca gcatcgatag tgagaatcgc
     3481 cgcctgtcgt tgtccatcaa ggatctcgag ccgaacgcgt gggagaagtt caccaccgag
     3541 cacaagcctg gtgacgtcgt tcggggcaag gtcgcccgtt tcgccaactt cggcgcgttt
     3601 gtcgaactcg acgacaatct cgaaggcctc tgccacatct cggagctttc cgaggagcgc
     3661 gtggcgaagc ccgaggacgt ggttcaactg ggacaggagc tcgatttcaa gatcctgcgc
     3721 atcgatcccg acaccaagaa aatcggcctc tccgcccgcg cggtgggcaa ggacgagccc
     3781 atcatcgaca cgaagatcta ttcttcggaa gcgggcggcg gcatggcgtc attgggcgaa
     3841 ctggcggatt tcggtctcaa ggccgagtcg aacgacgagt agacaatcca cagattccag
     3901 ggattacaca gggtctctct ctgtgtaatc tgtggatgta ccttgtacga ctaacataac
     3961 ctcgctatta tcaatacgtt agtttacacc cctaactgat cgaggtgatg catgacaaaa
     4021 gcagaactcg tcgaagacgt agcgcgagcg gctgagctca cgaagaagga cgccgaacgt
     4081 ttagtcgaaa ttgtctttga cagcatcatt gagactttga accagggcga gaagatcgaa
     4141 ctgcgcggct tcggcagctt ccgcgtccgc gagcgcggcg cgcgccgtgg gcggaacccg
     4201 aagacgggcg acccggtcag catccccgcc aagcgggtgc cgtacttcaa acccggtaag
     4261 gagctgaaag agctcatcaa cgacgacaat gcggccgcac aagcctcgca aacaaactcc
     4321 tcacgcgggc tgacagacga caatcatcag ccgccaatca tttagcccct ttaggtccag
     4381 ccgcgaggta attcgagttg cagagattgt ggagtccctg gcgttccaag tacatcgcgt
     4441 cgggtgtcga ttcacagaag gaaggctgcg tcttttgtag catcgcggcc gatccggacg
     4501 gcgacgcggc taacttcgtg ctgcatcgcg gcgagcacgc gttcgtgctg ctcaatcttt
     4561 atccgtacat caccgggcac ctgatgatcg tgccttacct gcacaccagc gagtttgatt
     4621 cggtggcgaa agagatcacg gatgagatga tggatctcgc gaagagatcg cagacggcgc
     4681 tgcgtgaggt ttattcaccg tcaggtttca acatgggaat gaatctcggc tccgccgcgg
     4741 gcgcgggtat cgcagaccac attcacattc acgtgttgcc gcgctggagt ggtgacacga
     4801 atttcatgac tacggttggt gagtcgcgcg taattccgga agcgttggaa gtgacttacc
     4861 agaagttgaa agagaagttc taacgtttac cgaccttgcg tggcagcgcc tcgtcctcga
     4921 cttcaccgcc acggctcatc ggaacctcag aaggtttgct gtagctcacg ccacgttctt
     4981 cgctgtcgat atcgcctgcc ggtaatggac cagcgggcgg cgggttgaag cccggataat
     5041 cgatccgcgc gtgatagatc gcggtgagcg cgctgatcat cgcttcgcga atcgtcgtca
     5101 gctcctgcaa cgtgatgtcg cactgatcga gctgcccgtc gctgacgatc gcgtcgacga
     5161 tcttcacgac gatcgcgcgg atgttttccg gatcggcgcg cgcgagagat cgcgccgctg
     5221 cttcgcacga gtccgccagc atcatgatcg cggcttcttt gaactgcggc tttggtccgg
     5281 gataacggaa gtcggcttcg tcgactgttt cgttcggctt tgcttgcgcc tgtgctttgc
     5341 gcagaaagta gtgcagcgtg cgcgtgccgt gctgttgcgg gatgaagtcg gcgatcgtct
     5401 gcggcagtcc gatctctttt gcgagacgcg agccgtaggt gacgtgactc gtgatgatct
     5461 tggcgctttg ataaggccgc agacgatcgt gtggattgtc tccctgc
//
LOCUS       DASWTX010000737         3008 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_421094, whole genome shotgun sequence.
ACCESSION   DASWTX010000737 DASWTX010000000
VERSION     DASWTX010000737.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3008
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421094"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..655
                     /locus_tag="VGD38_11210"
     CDS             <1..655
                     /locus_tag="VGD38_11210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728630.1"
                     /translation="TRFDANGRFAFRAGYPLSSLVDDGIVNTSDALVPGDFRAERARS
                     LLDRRHRLVVSGTFNLRRLIGGLTLSPIWRVASGAPFNISLSGLDRNLDDVSNDRPNY
                     SGDLRLLRWRKPNEPLDPSVLAAFSLPPLGQSGNLPRNAGRGPGLFVFDLNVTRDFKT
                     GPLKFRSSIELNNVLNKTVFSFGSEFINFTSNSNESLFLATRTGRPRQLRIGLKAEF"
     gene            656..1042
                     /locus_tag="VGD38_11215"
     CDS             656..1042
                     /locus_tag="VGD38_11215"
                     /inference="COORDINATES: protein motif:HMM:NF024759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GxxExxY protein"
                     /protein_id="HEY0728631.1"
                     /translation="MEEYRDLTYKIIGVFYDVYNELGHGFLESVYQKSFGLALQAAGL
                     EACWPIAIPVSFRGQQVGHFEADMLVEKCVLLELKAMRALERSHEAQLRNYLRATDIE
                     VGLLFNFGLRPEFRRLLFTNPGKVIR"
     gene            1304..2020
                     /locus_tag="VGD38_11220"
     CDS             1304..2020
                     /locus_tag="VGD38_11220"
                     /inference="COORDINATES: protein motif:HMM:NF025690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4388 domain-containing protein"
                     /protein_id="HEY0728632.1"
                     /translation="MPVTDSQSEHVNEIEAALLDAELFMKYQAPERAIKRLKTALEVN
                     SRSIKLRERLREVYAGQKNKEEAARQCLALASLYIEREDFETAHDRLLEAKQLDERIN
                     IAGGLEAIRRARRPDLKPSPTAAEPVFERKHFTLAGDLRSISVFDAIQVIENARLNGV
                     LTLSGAGHEGQVKFNDGRIVDASFRGDSGDRAFQRVVEITNGTFEFQKTVEQFPVRIE
                     ALTNTNLILDTLRLLDEQKQ"
     gene            complement(2195..>3008)
                     /locus_tag="VGD38_11225"
     CDS             complement(2195..>3008)
                     /locus_tag="VGD38_11225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728633.1"
                     /translation="KGTRLLDERGYVSDWPSMSLEFALQYGCPLRANYSERHLREWGR
                     LSSLHAKLTTGDAGAPSIDKIEWVEKASPEIERMQEATSICAHCPACLPLEVAGDGES
                     VGCLGRINYPIEAVFEKFLADRVQLSLDTLDRDDQPRLLRILVDPESPFDGEATKELR
                     RVVTEEGLRFFELRVPIVLTRDAARLTTDNVFDLLAGFRSEDSQQTTYTRELPFEAAA
                     DYYDFLDLLLRNELSQSEITRLTARSRNYTQFLRLLTAIEKAEALNTRLLID"
BASE COUNT          654 a          939 c          758 g          657 t
ORIGIN      
        1 cacgcgcttt gatgcaaatg ggcgctttgc tttccgcgcg ggttacccgc tttccagttt
       61 ggttgacgat ggcatcgtca atacatcaga cgcgctcgtt cccggagact ttcgcgccga
      121 acgcgcgcgc agtttgctcg atcggcgtca tcgtcttgtt gtctccggca cctttaatct
      181 ccggcgtctt atcggtggtc taactctttc accgatctgg cgcgtggcct ctggggcgcc
      241 cttcaacatc tccctcagtg gcctcgaccg caacctcgac gacgtgagta acgatcgccc
      301 caactactcc ggcgaccttc gtcttcttcg ctggcgtaaa cccaatgaac ctctcgatcc
      361 ttccgtactc gcagccttca gccttccacc actcggtcaa tccggaaacc tcccccgcaa
      421 cgccggccgc ggccccggcc tcttcgtgtt cgacttgaac gttacgcgag acttcaaaac
      481 aggaccgcta aagttcaggt cgtcgatcga actgaacaac gtcttaaata aaacagtctt
      541 cagttttggt tcggaattca tcaacttcac atcgaattcc aatgaatccc ttttcttggc
      601 gacgcgcacc ggacgccctc gccaactgcg tatcggccta aaggcggagt tctaaatgga
      661 ggaataccgg gatcttactt acaagatcat cggcgtcttc tacgacgtct acaacgaact
      721 aggacacggg tttctcgaat cggtctatca gaagtctttt ggattagcgt tgcaagccgc
      781 tggtctcgag gcgtgctggc cgatcgcgat ccccgtgtct tttcggggtc agcaggtggg
      841 acatttcgaa gccgatatgc tcgtcgagaa atgtgtattg ctcgaattaa aagctatgag
      901 ggcgctggag cggtcccacg aggctcagtt gcggaactat ctgcgcgcta cggatatcga
      961 ggtcggatta ctgttcaact tcggcttgag acctgagttt cgaagactgc ttttcaccaa
     1021 ccctggcaaa gtaattcgtt gaagcctgag atcctgtttc gtgagcattc acacgggccg
     1081 aaacctgctt ttccgcagaa tcacagcgcg cccgggactt ctcaattcgt cgtttcatcc
     1141 atcgctggtt catttttcct actaccttcc aactacttct gatgtcttcc tgcccccgca
     1201 gtttgcatct ccttaatagc caacgcgtat tgatacgaaa aaacagctca tttcgttgtg
     1261 ataaactccc gtttggccgc aagtcggagg ttttctcccg gaaatgccag tcactgactc
     1321 acaatccgaa cacgtcaacg agatcgaggc cgccttgctc gacgccgagc tcttcatgaa
     1381 ataccaggcg ccggaacgcg ccatcaagcg cctcaagacc gcgcttgagg tgaacagccg
     1441 gtccatcaag ctgcgcgaac gcctccgcga agtctatgca ggtcagaaga ataaagagga
     1501 agcggcgcgc caatgcctcg cgctggccag tctttatatt gaacgcgaag acttcgagac
     1561 tgcgcacgac cgtctgctcg aagccaaaca gctcgacgaa cgcatcaaca ttgcgggtgg
     1621 actcgaagcg atccgacgcg cccgccggcc ggatttaaaa ccgtctccta cggccgccga
     1681 gcccgttttt gaacgaaaac atttcacgct cgcgggcgac ctgaggtcga tcagcgtctt
     1741 cgacgcgatt caggtcatcg agaacgcccg gttgaatggt gtgttgacgc tgagcggcgc
     1801 ggggcacgaa ggccaggtga agttcaacga cgggcggatt gtcgatgcgt cattccgcgg
     1861 ggatagtggt gatagggctt ttcagcgggt cgtggagata acgaacggaa cgtttgaatt
     1921 ccaaaagacc gtcgaacaat tccccgtccg aatcgaagcc ctcaccaaca ccaacctcat
     1981 cctcgacacg ctgcggctgc tcgacgagca gaagcagtga tttgctcggc tctgcctgaa
     2041 tcccaccgac gcagtcggtg gtacttcaat gccccaccta ccccaacaaa ctcaggatcg
     2101 acaatcccac caacgcagtt ggtggatcgt taactcttca cccagggggg aagtgaacga
     2161 tccaccgact tcgtcggtgg gattttaacc aggctcaatc gatcaacaac ctcgtgttca
     2221 gcgcttcggc cttttcgatc gccgtcagca gccgcaagaa ctgcgtgtag tttcggctgc
     2281 gcgccgtgag ccgtgtgatc tcggattggc tgagttcgtt ccgcagcagc aggtcgagga
     2341 agtcgtagta atcagcggcc gcctcaaacg gcagctcgcg tgtgtacgtc gtctgctgac
     2401 tatcttccga acgaaacccc gcaagcaggt cgaaaacgtt atccgtcgtg agccgcgccg
     2461 catcgcgcgt caacacgatc ggcactcgca gctcaaagaa ccgcaacccc tcctcagtca
     2521 caacgcggcg caactccttc gtcgcctctc catcaaatgg cgactccgga tcaaccaaaa
     2581 tacgcaacag ccgcggttgg tcgtcccgat ccagcgtgtc gagcgaaagc tgcacccggt
     2641 ccgcgaggaa cttctcaaac accgcctcga tcggatagtt aatcctcccc aagcacccga
     2701 ccgactcgcc atcacccgca acctcaagcg gcaaacacgc cggacagtgc gcgcagatac
     2761 tcgtcgcctc ctgcatgcgc tcgatctcgg gcgacgcttt ttccacccac tcgatcttgt
     2821 cgatcgacgg cgcgccagcg tctccagtgg tcaatttcgc gtgcaaactg ctcaaacgtc
     2881 cccactcgcg caggtgtctt tccgagtaat tcgcccgcaa cgggcaaccg tactgcaatg
     2941 caaattccaa tgacatcgat ggccaatcac taacatagcc ccgctcatcg agcaagcgag
     3001 tgcctttg
//
LOCUS       DASWTX010000738         2998 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_75873, whole genome shotgun sequence.
ACCESSION   DASWTX010000738 DASWTX010000000
VERSION     DASWTX010000738.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2998)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2998)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2998
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75873"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..336
                     /locus_tag="VGD38_11230"
     CDS             <1..336
                     /locus_tag="VGD38_11230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728634.1"
                     /translation="EGDGKATRKKRPRILAITTDCCTGCSGSPACIEYCPIEACMFWV
                     PDEDHPPFGRIEVDPYLCIGCQKCTSKGPDGAFLDGCPWDAIEMVPTDDWEAVHGITL
                     PDSPPAPPA"
     gene            complement(333..1154)
                     /locus_tag="VGD38_11235"
     CDS             complement(333..1154)
                     /locus_tag="VGD38_11235"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HEY0728635.1"
                     /translation="MPRGRAPGSGPILILAALFVVATFLAWYFTWFGRELSDADISKY
                     LADDKNPRHVQHALLQIQQRIERGDATAKNWYPQLVALSNSAEPEFRLTVAWLMGFDN
                     QAPQFHESLLKLVKDQEPLVRRNAALALVRFNDPSGREELVAILKPYPVRAPVNGVVA
                     SSLQEGATVARSTLLARIEQADKTVVQVRSPLPGKIQKVVKANGSQVSQGDEVLSLNS
                     DENSIWEALRGLSLVGTAEDVQVVESYANPNAVSARIHDQANLTLKAIKARIKPG"
     gene            complement(1147..1578)
                     /locus_tag="VGD38_11240"
     CDS             complement(1147..1578)
                     /locus_tag="VGD38_11240"
                     /inference="COORDINATES: protein motif:HMM:NF016153.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF420 domain-containing protein"
                     /protein_id="HEY0728636.1"
                     /translation="MADFISYLPHVNACLNGTSAILLFTGYTFIRSRNVIAHRACQIA
                     ALCISLLFLASYLTYHYNHGATRFLGTGLARTFYFTVLTSHTILAIVIVPLVILTFYR
                     AFRGDFLRHRRIARITLPLWLYVCVTGVIVYVMLYHLYPHA"
     gene            complement(1591..1965)
                     /locus_tag="VGD38_11245"
     CDS             complement(1591..1965)
                     /locus_tag="VGD38_11245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728637.1"
                     /translation="MRKELGLLNFMCLLVALAFLALAIISVISSGDFFTIDNLFIITV
                     SLLMALMFVVSPLLYLKSEGKLPLPGLKRSPSLPPASNGGPEPLRSAARTPPLLDAKG
                     RAVPPDVKAIMNRMSPTEAKDA"
     gene            complement(1990..2205)
                     /locus_tag="VGD38_11250"
     CDS             complement(1990..2205)
                     /locus_tag="VGD38_11250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728638.1"
                     /translation="MADDNPLAIDVERNTTRGRFCPRCGGKIIPSNRAVYQTGADPAG
                     SFPLWQCERCGYEEVGERKKPAGKARH"
     gene            complement(2198..2434)
                     /locus_tag="VGD38_11255"
     CDS             complement(2198..2434)
                     /locus_tag="VGD38_11255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728639.1"
                     /translation="MRLRAWHTALIVALVAAAVLLFAVPADAQCSMCRAALNGSNNAR
                     FIRGLSIGVLVLLIPPVTIFCSIFIVLRRYRGDG"
     gene            complement(2434..2799)
                     /locus_tag="VGD38_11260"
     CDS             complement(2434..2799)
                     /locus_tag="VGD38_11260"
                     /inference="COORDINATES: protein motif:HMM:NF015582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C oxidase subunit IV family protein"
                     /protein_id="HEY0728640.1"
                     /translation="MSDHGAHVEEHFSGSNKLFISIWVWLLVLTLLEIFLAYKPMALH
                     LMLTVLLGLSLIKAFLIMAYFMHLKFERLSLIITLIPALVVCILLLLIFFPDSFRSQG
                     LRYQYKEPPPVAPPPVEEL"
BASE COUNT          727 a          881 c          819 g          571 t
ORIGIN      
        1 gagggcgacg gtaaggcaac tcggaagaaa cggccgcgca tactcgccat caccaccgat
       61 tgttgcaccg gctgctccgg ttcaccggcg tgtatcgagt attgtccgat tgaagcctgt
      121 atgttctggg tgcccgatga agaccatcca ccgttcggcc gaatcgaagt ggatccttac
      181 ctgtgcatcg gttgccagaa gtgcaccagc aaaggtcctg acggcgcgtt tctcgacggt
      241 tgtccgtggg acgcgatcga gatggtgccg actgacgact gggaagccgt gcacggtatc
      301 acgctgccgg actcaccacc cgcaccacca gcttaaccag gtttgattct cgccttgatc
      361 gcttttaagg tgaggttggc ttggtcgtga attctcgctg agacggcgtt agggtttgcg
      421 taactctcga ctacctgaac atcttccgca gttccaacta aagacagccc tcgaagcgct
      481 tcccaaatac tgttctcatc tgaattcaga ctcaaaacct cgtcgccctg ggaaacctgt
      541 gatccatttg ctttaacgac cttttgaatc ttccccggca acggcgaacg cacctgcacg
      601 accgtcttat ccgcctgctc gatacgcgcg agcaacgtac tgcgcgccac cgtcgcgccc
      661 tcctgcaaac tgctcgcaac cacaccattc accggcgctc tcaccggata cggtttcaaa
      721 atcgcgacca gctcttcacg accactcgga tcgttgaacc gaacaagcgc caacgccgca
      781 ttgcggcgca cgagcggttc ctgatctttc actaacttca acaacgattc atgaaactgc
      841 ggcgcctggt tgtcgaaccc catcaaccat gcaaccgtca aacgaaactc cggctcagcg
      901 ctgttactca acgcaaccaa ctgcggatac cagtttttcg ccgtcgcgtc accacgttcg
      961 atgcgttgct gaatctgcaa caacgcgtgc tgcacgtggc gcgggttctt gtcatccgca
     1021 aggtatttcg agatgtcggc gtcggacagt tcgcgtccaa accaggtgaa ataccacgcc
     1081 aggaaagtcg cgacgacgaa cagtgcggca agaatcagga ttggaccaga gccgggtgcg
     1141 cgacctctag gcatgcgggt aaagatgata aagcatgacg tacacgatca cgcccgttac
     1201 acatacgtac agccacagcg gcaacgtgat ccgcgcgatg cgccggtggc gcagaaagtc
     1261 tccacgaaac gcgcgataga acgtcaggat cacgagcggc acgatcacga tcgccaggat
     1321 cgtatggctc gtcagcaccg tgaaatagaa cgtacgcgcc agaccggttc cgagaaaacg
     1381 cgtcgcgccg tggttgtagt gataagtgag atacgaagcg agaaagagta acgagatgca
     1441 cagcgcggcg atctgacacg cgcgatgcgc aatcacgtta cgcgatcgga tgaatgtata
     1501 accggtgaat aacagaatcg cgctggtgcc gttcagacaa gcgttgacgt gcggtaaata
     1561 agagatgaaa tcagccacag agaaagaata tcacgcgtcc ttggcttcag tcgggctcat
     1621 gcggttcatg atcgccttga cgtcgggcgg cacagcgcgg cctttcgcgt cgagcagtgg
     1681 cggtgtgcgt gcggccgatc tcaacggctc tggaccacca ttcgacgccg gcggcagcga
     1741 cggcgaacgc ttcaggcccg gcagcggcaa cttgccttcg gacttgagat agagcagcgg
     1801 actgacgaca aacatcaacg ccatcagcag actcaccgtg atgatgaaga gattgtcgat
     1861 ggtaaaaaag tcgccggaac tgatcacgct gatgatggcc aacgccagga aggccagcgc
     1921 caccagcaga cacataaagt tgagaagtcc gagttctttg cgcatcacag tcgctgtcat
     1981 tgtatgtgtt tagtgccggg cctttccagc aggcttcttc cgttcaccaa cttcctcgta
     2041 accgcatcgt tcacattgcc acaacggaaa cgatcccgcc gggtcggcgc ccgtttgata
     2101 aaccgcgcga ttcgagggaa tgatcttccc tccacaacgc gggcagaacc gtccgcgcgt
     2161 cgtgtttctc tctacgtcga ttgcgagcgg gttgtcgtca gccatcgcct cggtaacgcc
     2221 tcaacactat gaagatcgaa caaaagatcg tgaccggcgg aatcaacaac accagcacgc
     2281 cgatactgag ccccctgata aaccgcgcgt tgttggaacc gttcagcgcg gcgcggcaca
     2341 tcgagcattg cgcgtcggca ggcacggcaa acagcaacac tgctgctgcc accaacgcga
     2401 cgatcaaagc tgtatgccac gcgcgcaaac gcattagagt tcctcaaccg gcggcggcgc
     2461 gacgggcggc ggttccttgt actggtaacg caagccctgc gaccggaagc tgtcggggaa
     2521 aaagatcagc aataacagga tacagacgac cagcgccggt atcagtgtaa taatcaaact
     2581 cagccgctca aatttcaagt gcatgaagta ggccatgatc aagaacgctt tgatcagcga
     2641 aaggcccagc aggacggtga gcatgaggtg gagagccatc ggcttgtagg ccagaaagat
     2701 ctccagcagc gtcagaacca acagccaaac ccaaatcgag atgaacagct tgtttgagcc
     2761 cgaaaaatgc tcttcaacgt gtgctccatg atcgctcatt gcagcattcc tccagttggg
     2821 ttagtgcggg accgcggcca ggtggccgcc gatatccact gacatgatgt agatcagcgg
     2881 gaacacaaac atccagacga ggtcgacgaa gtgccagtag aggccgctga tctcgacgtc
     2941 ttcgtgcttc agcttgttca cacgcgcggc gacgaccgcg agataaacag cgcccgaa
//
LOCUS       DASWTX010000739         2289 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_138880, whole genome shotgun sequence.
ACCESSION   DASWTX010000739 DASWTX010000000
VERSION     DASWTX010000739.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2289)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2289)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2289
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138880"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1822)
                     /locus_tag="VGD38_11265"
     CDS             complement(<1..1822)
                     /locus_tag="VGD38_11265"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0728641.1"
                     /translation="MSASQIGKILVVDDEVELKNVLVEALVSQGYRTTGLKSGAEALA
                     AIRTQAFDVVLTDLIMPGMDGVTLVQEALQMDPHLVCIVMTGQGTIQTAVDAMKVGAF
                     DYVLKPFRFDTLPPMIDRAMDVRQMRLENLQLRETVAIYELAQTITLTPDPQAVINKL
                     VEAVLKQTDADEVAVLLPCNDGTDDLYVAAVDGAVPERSVNERVPGDFHENSSSFSIP
                     LQVGNKVVGMLNINAWTRLRPFTVAQMKVLTILAATAAAALESASRRDLEQQLRQSQK
                     MEAIGRLAGGVAHDFNNLLTAINGYSSLALQRSNPDDRVRGYLEEIKKAGERAANLTR
                     QLLAFGRKQMLKPVVLNLNDIVSDMNKMLRRLIGEDIRFNAKFDPDLKPIKADPGQIE
                     QVLVNLVVNSRDAMPQGGILTIETTNFESHAEFAVKHLGLAPGQYVVLTVSDSGCGMD
                     EKTKARIFEPFFTTKEKGRGTGLGLSTVYGIVKQSGGSVWVYSELGKGTVFKVYFPQL
                     EEGPEFAKPALVETAVPRGSETILLVEDEDVVRGLARKILEQAGYYVLDARGGEEALR
                     LCRELPGPIHLLLTDVVMPETSGKEIAECMQKLRPLTRVLY"
BASE COUNT          465 a          664 c          639 g          521 t
ORIGIN      
        1 tgtaaagcac gcgcgttaac ggccgcagct tctgcataca ctccgcgatc tctttgccgc
       61 ttgtttccgg catcacgacg tcggttaaca acagatgaat cggccccggc agctcgcggc
      121 acagacgaag cgcttcttcg ccgccgcgag cgtcgagcac gtagtaaccc gcctgttcca
      181 gaatctttcg cgcgagtccg cgcacgacgt cttcatcttc gacgagcaga atggtctccg
      241 agccacgcgg cacggccgtt tcaaccaatg ccggtttcgc gaactccggt ccttcttcta
      301 attgcggaaa gtagactttg aagacagttc ccttacccag ctcgctgtaa acccaaacac
      361 tgccgccgct ctgtttgacg atgccgtaaa cagtcgatag accaagcccg gtgccgcgtc
      421 ctttttcttt cgtggtaaag aacggctcga agatgcgcgc ctttgtcttc tcgtccatgc
      481 cgcaaccact gtcactcacg gtgagcacga cgtactgacc cggcgcgaga ccgagatgct
      541 tgaccgcaaa ctcggcatgg ctttcaaagt tcgtggtctc gatcgtgagg attccgccct
      601 gcggcattgc atcacggcta ttgacgacga gattgacgag tacctgttcg atctgacccg
      661 gatcggcttt gatcggtttg agatcgggat cgaacttggc gttgaaccgg atgtcttcgc
      721 cgatcaaacg ccgcagcatc ttgttcatgt cggaaacgat gtcgttcagg ttgagaacga
      781 cgggtttcag catctgcttg cggccgaacg cgagcagttg gcgcgtcagg tttgcggcgc
      841 gctctcctgc ctttttgatt tcttcgagat agcctctgac gcgatcgtcg ggattggagc
      901 gttgcagcgc gagactgctg tagccgttga tggcggtgag caggttgttg aagtcgtggg
      961 ccacgccacc ggccagccgc ccgattgctt ccatcttctg cgactgccgt aactgctgtt
     1021 cgagatctct tcgcgacgcg ctttcaagcg ccgccgcagc ggtcgccgca agaatcgtca
     1081 acaccttcat ctgcgcgact gtgaagggac gcaaccgtgt ccaggcgttg atgttcagca
     1141 tgccgacgac tttgttaccc acctggagcg gaatcgaaaa cgacgaactg ttttcatgaa
     1201 aatcccccgg cacacgctcg ttgacggatc gctccgggac cgcgccgtcc accgcggcaa
     1261 cgtaaagatc gtcagtaccg tcgttgcacg gcagcaagac cgcaacttcg tcggcgtcag
     1321 tctgtttgag aacggcttcg acgagtttgt tgatgactgc ttgcggatcg ggcgtgagcg
     1381 taatcgtctg ggccagctcg tagatcgcca ccgtctcgcg cagttgcagg ttttcgagcc
     1441 gcatctgccg gacgtccatc gcccgatcga tcatcggcgg caaggtgtcg aaacgaaacg
     1501 gcttgagcac gtaatcaaac gcgccgactt tcatcgcgtc gactgccgtt tgaatcgtgc
     1561 cctgacccgt catcacgatg cagacgaggt gtggatccat ttgcagagct tcttgtacga
     1621 gcgtgacgcc gtccatgccc ggcataatca ggtctgtcag cacgacgtcg aaggcttgag
     1681 tgcggatggc cgcgagggct tcggcgcctg acttgagacc cgtagttcga taaccctgtg
     1741 agactaaagc ctcaaccaga acattcttga gctcgacctc atcgtcgacc accaggattt
     1801 ttccgatttg gcttgcactc atgatggctt gaaccttgaa agcattacac agaggtgggg
     1861 gacggcaacc tcgccctggt cgccgccccc ctttgcacgc gcgaggactg ttcgagactc
     1921 tgcgcgcgta tcgttaaact ctatttgact gcgactcgcg cctgattgga cccgcacggc
     1981 tcgagctaaa gaccccgctg aacagaaacc actttgtaca tgtgaaactg gggcacgctg
     2041 gtgctggtgt ttgatcccca ctgatgcata gcccgcttgg ctcgatgacg tgaggttttg
     2101 agacttgatt ttaaaccgca ttcaattgag cgtggggcta tttgcatcaa tcaaatatcg
     2161 cgtgattagg ctaagcgcta cggcgatagt gcgcaatgag gagattcctg aagggaaact
     2221 cagggaagtc ctgagggggt aaacgctctt gacaactatt cgacctggat caaaccgacg
     2281 acgatggca
//
LOCUS       DASWTX010000740         2090 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_382458, whole genome shotgun sequence.
ACCESSION   DASWTX010000740 DASWTX010000000
VERSION     DASWTX010000740.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2090
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_382458"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..184
                     /locus_tag="VGD38_11270"
     CDS             <1..184
                     /locus_tag="VGD38_11270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728642.1"
                     /translation="IDTSKPHPFVQEGNTEFNMFLWMPPEGDRAGDILFADSTIFSTL
                     FGADDSLRNFWRNLVT"
     gene            174..1505
                     /locus_tag="VGD38_11275"
     CDS             174..1505
                     /locus_tag="VGD38_11275"
                     /inference="COORDINATES: protein motif:HMM:TIGR01413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Dyp-type peroxidase"
                     /protein_id="HEY0728643.1"
                     /translation="MLHNGATTQLELDDIQSGVLRPRPTPYVATYIAFRIDDRKAGRE
                     LIHRASQVVTSAANPNSPLADTWVSVALTCKGLEALGVPRESIESLSWEFRQGMAARA
                     KELGDVGESAPQNWEEPLGSSDLHVVLVAVSPDEGRLESALERARETYRNMPGITAIW
                     RQNCHALATETEPFGFRDGISHPAIEGSGIAGTNPQEQPLKAGEFVLGYRDELGGVQR
                     TEPEILGRNGTYVVFRKLHQRVAEFRKYLKANSSTVADEELLAAKMMGRWRSGAPLAL
                     CPFHDDAVLGADSKRNNNFLFEADDAAGFKTPGGSHIRRCNPRDAAIAGVARIHRMIR
                     RGTAYGPELPEGVLEDDGVDRGLMFAFVGAHLGRQFEFVQSQWVNDGVFFGAGDDKDP
                     IIGSNGNNFTLPRKPVRKRLQGIPQFVVTRGGEYCFMPGLRALRWLSELKT"
     gene            1618..2019
                     /locus_tag="VGD38_11280"
     CDS             1618..2019
                     /locus_tag="VGD38_11280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728644.1"
                     /translation="MRDMLLRMLMNFSDRVGGPMTFRIILQPLMASLLAIRAGMKDAQ
                     TGRPPYLWTILTDAGQRGDLVREGWKSVARVFVLAIVMDVIYQVVVLKWVYPFELLLI
                     AILLAVVPYLLIRGPVNRLVRRLRRKREATP"
BASE COUNT          406 a          590 c          654 g          440 t
ORIGIN      
        1 aatcgacact tcaaagccgc acccgttcgt tcaggaaggc aacaccgaat tcaatatgtt
       61 tctgtggatg ccgcccgaag gcgatcgcgc gggtgacatt cttttcgccg actcgacgat
      121 cttcagcacg ttgtttggcg ctgacgacag tctgcgaaac ttctggagaa atcttgttac
      181 ataacggagc aaccactcaa ctcgagctcg acgacattca gagcggtgtg cttcgtccgc
      241 ggcccactcc ttacgtagcc acttacatcg cgtttcgcat cgacgatcgc aaggccggac
      301 gcgagctgat ccaccgcgcg tcgcaggtcg tgacgtctgc tgcgaatcca aacagtccac
      361 tggctgacac gtgggtcagc gttgcgttga cgtgcaaagg tctcgaagcg ctcggcgtgc
      421 cgcgcgaatc gatcgagagt ctttcgtggg agtttcgcca gggcatggcc gcgcgcgcga
      481 aagagttggg cgacgttggc gagagtgcgc ctcagaattg ggaagaaccg cttggaagtt
      541 cagacttgca cgtcgtgctg gtggcggtct cgccagacga gggacgactc gaatccgcgc
      601 tcgaacgcgc acgagagact taccgcaaca tgccgggcat cacggcgatc tggcgtcaga
      661 actgtcacgc gctggcgacc gaaaccgagc ctttcggatt tcgcgacggc atcagccatc
      721 cggcgatcga aggcagcggc atcgcgggaa cgaatccgca ggaacagccg ctcaaggcgg
      781 gtgagtttgt actcggttat cgcgacgaac tcggcggtgt gcaaagaacc gagcccgaga
      841 ttctcggccg caacggaacg tacgttgtgt ttcgcaagtt gcaccagcgc gttgccgagt
      901 ttcgcaaata tctcaaagcg aattcgtcga ccgttgcaga tgaagaactg ctcgcggcga
      961 agatgatggg ccgctggcgc agtggcgcgc cgctcgcgct gtgcccgttt cacgacgacg
     1021 ctgtactcgg cgctgattcg aaacgcaaca acaactttct tttcgaagca gacgatgccg
     1081 cgggtttcaa gacaccgggc ggctcgcaca tcagacgctg caatccgcgc gacgcagcga
     1141 tcgcgggcgt ggcgcggatt caccgcatga ttcgacgcgg cactgcgtat ggaccagagc
     1201 tgccggaagg cgtgctcgaa gacgacggcg tcgatcgcgg gttgatgttc gcgtttgtcg
     1261 gcgcgcatct cgggcggcag tttgagtttg ttcagtcgca gtgggtcaac gacggcgttt
     1321 tcttcggcgc tggagatgac aaggatccaa tcatcggttc aaacggcaac aactttacgc
     1381 tgccgcgtaa gccggttcgc aaacggttgc agggcatccc gcagtttgtc gtcacgcgcg
     1441 gcggtgagta ttgcttcatg ccgggcctgc gcgcgttgcg ttggttgagc gagttgaaga
     1501 cgtagtgatc agagtcggca ttcttgtgct tgtgctaatc accgctgttg agtcgcgctc
     1561 atgccggccg ggtaaaccgc gcccttggcc cacagccttg gaatgaggat ctgacgaatg
     1621 cgagacatgt tgctgcgcat gttgatgaac tttagcgacc gtgtcggcgg gccgatgacg
     1681 tttcggatca ttctgcaacc gctgatggcc tcgctactcg ccattcgtgc cgggatgaaa
     1741 gatgcgcaaa caggccggcc gccgtacctc tggaccatac tcaccgatgc gggtcagcgc
     1801 ggcgatctcg tgcgcgaggg atggaagtcg gttgcgcgtg tgtttgtgct cgcgatcgtg
     1861 atggacgtta tttatcaggt ggttgtgctg aagtgggttt acccgtttga attgcttctg
     1921 atcgcgatac tgctggccgt agttccatac cttttgattc gtggtcccgt gaaccgtctc
     1981 gtgcgtcgcc tgcgacgcaa gcgtgaagcg acgccataat ggacggccca cgatctttgg
     2041 ggcaaagccc gaaccagggg cgcagcccac tccgctcatc aagcggcttc
//
LOCUS       DASWTX010000741         3918 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_404877, whole genome shotgun sequence.
ACCESSION   DASWTX010000741 DASWTX010000000
VERSION     DASWTX010000741.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3918)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3918
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404877"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2440)
                     /locus_tag="VGD38_11285"
     CDS             complement(<1..2440)
                     /locus_tag="VGD38_11285"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0728645.1"
                     /translation="MYESLSQYSPQQLVRYRTISVACALLTMSIGVVGLLGWILDNEI
                     LKRIHPALVTIKANTAVCLILTSAALLLLRDPLTSNWKRRTGQLFAILVALVGFLTLI
                     QHLTGWNIGIDQLLFTETEAAAGPSFPGRMGVAASLNFIFFGFALMFLDARSPRWFRV
                     SNVAVLLVVTVTVLVFLYYFYGIETHDPIARYFTIALHTVIAFFSLCAGILLMRPERG
                     LVAIMLGNSPGGIVARRMWPMLLVVVLLGSIRAFGRESGWFGAGFGTAIFVLSILLIL
                     AALIWWTAVSLDRTDRERRQAEKRLDVLFRVSELVRTLRDPYELSYAVAQTVGVELDL
                     RRCLFNETDVERDLEIVHRDYCDRAESVAGVHRISDYSSVTSAAMMRGEAVINCDSKT
                     DPRTAADYKRAYEPNGERAYVAVPLMRDGQWVASLWASDDQPREWTKEEVSLLRSVAE
                     RTWTAIEKLRAEAERERLLQSEQEARDVAEKANQLKDEFLATLSHELRNPLNVILGYS
                     ELFLRTPEIEESSRLRKMAEALRRNAQSQSQLINDLLDLSRLQRGKISLNHETVSLAA
                     IIDNAVDTVRSEAAAKGVEIHLNIGDQFLLVDGDRLRLQQIAWNVLNNAVKFTPAGSI
                     NISLTRDEREAVLVIEDTGEGIDPSFLPHVFEMFRQADSSNSRRHGGMGIGLALVRQL
                     VQLHGGTIAAESAGTGKGSRFTIRLPLTTDAVRNPTGTAPPRALSAIADTDFLIVDDS
                     EDTIAMLDQLLKLSGANVTTATTGADALRIASEREFDVILSDISMPGMDGFEFLRRLR
                     QISGRQHVPVIAITG"
     gene            2954..3358
                     /locus_tag="VGD38_11290"
     CDS             2954..3358
                     /locus_tag="VGD38_11290"
                     /inference="COORDINATES: protein motif:HMM:TIGR02246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgcJ/EcaC family oxidoreductase"
                     /protein_id="HEY0728646.1"
                     /translation="MTDTTQNDKHAIRDMVRTWLEASKRGDSTTLLSLLADDVIFITP
                     GREPFGKEAFQGAEDQMKDMNMEAEIDIKEIEVAGPWAWMRSFLTVTFTPTGGDSSRM
                     SGHILTVLQKQPDGRWVIKRDANFVQPETTKG"
     gene            3449..3883
                     /locus_tag="VGD38_11295"
     CDS             3449..3883
                     /locus_tag="VGD38_11295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728647.1"
                     /translation="MRRFTILAVAVFSFLIVSTGSTLAQRQWYRGNVREVIRDLESDT
                     DRYKGSLDNALDRSRLNGSRTEDEINEHVKRFEEATDHLRDRAEDRQYAPNLAREVLN
                     RGRSINVFMRRHRLGGQAESDWAKVRNDLNRLANSYYINWRW"
BASE COUNT          858 a         1145 c         1165 g          750 t
ORIGIN      
        1 agccggtgat tgcgatgacg gggacgtgtt ggcggcccga gatttggcgc aggcgtcgca
       61 ggaattcgaa accgtccatt cccggcatcg agatgtctga caggatcacg tcaaactctc
      121 tttcacttgc gatacgcaaa gcgtcggcgc cggtcgtcgc ggttgtcacg tttgcgccgc
      181 tgagtttcag cagttggtcc aacatcgcga tcgtgtcttc ggagtcgtcg acgatcagaa
      241 agtcggtgtc ggcaatggct gacaatgcgc gcggaggcgc ggtgcctgtt ggattacgga
      301 ccgcgtcggt tgtgagcggc aggcgaatgg tgaagcgcga gcctttgcct gttccggccg
      361 attcagccgc gatcgtgccg ccgtgaagct gaacgagttg ccggacgagc gcgaggccga
      421 tgcccatgcc gccgtgtctg cggctgttgc tgctgtcagc ctgacgaaac atctcgaaaa
      481 cgtgcggcag aaagctcgga tcgattccct cgcccgtgtc ttcgataacc agcaccgcct
      541 ctcgctcgtc gcgagtcaga ctgatgttta tgctgcccgc gggcgtgaac ttcaccgcgt
      601 tgttcagaac gttccacgca atctgttgca gacgcaaacg gtcgccatcg acgagcagaa
      661 actgatcgcc gatgttcagg tgaatctcga cgccctttgc cgctgcttca ctgcgtacag
      721 tgtccaccgc gttgtcgatg atggccgcca gcgagactgt ctcgtggttc agagaaatct
      781 ttccgcgctg gagccgcgat agatcgagca ggtcgttgat caactgcgac tgcgactgcg
      841 cgttgcgacg cagtgcttca gccatcttgc gcagccgcga cgactcttcg atctccggcg
      901 ttcgtaaaaa cagttccgag tagccgagaa tgacgttcaa cggattgcgc agctcgtgtg
      961 aaagcgtggc cagaaactcg tctttgagtt gattggcttt ttccgctacg tcgcgtgctt
     1021 cctgttcgct ttgcaacaac cgctcgcgct ctgcttccgc acgcagcttt tcgatcgccg
     1081 tccacgtgcg ttcggcaacg ctgcgcaaca gcgacacttc ctctttcgtc cattcgcgcg
     1141 gctgatcgtc gctcgcccac agcgatgcga cccattggcc gtcgcgcatc agcggcaccg
     1201 cgacatacgc gcgctcacca ttcggctcgt aagcgcgttt gtaatccgcg gcggtgcgcg
     1261 gatcggtttt ggagtcgcag ttgatgactg cttcgccgcg catcatcgcg gccgaagtga
     1321 cgctgctgta atccgagatg cgatgaacgc ccgcgaccga ttcggctcgg tcgcagtagt
     1381 cgcgatgaac gatctccagg tcgcgctcga cgtctgtttc gttgaacagg caacggcgca
     1441 gatcgagttc gacgccgact gtttgcgcca cggcgtaaga gagctcgtaa ggatcgcgca
     1501 gcgtgcgcac cagttcgctg acgcgaaaga gcacgtcgag acgtttttct gcctgccggc
     1561 gttcacggtc ggtgcgatcg agtgagaccg cagtccacca gatcaacgcg gcaaggatca
     1621 ggagaatgct caggacaaat attgccgtcc cgaaccccgc gccaaaccac ccggattcgc
     1681 ggccaaatgc cctgatggat ccgagcagaa cgacgaccag caacatcggc cacatgcgcc
     1741 gcgccacgat gccgcccgga ctgttgccca gcatgatcgc gacgaggccg cgctcgggac
     1801 gcatcaacag gattccggcg cagagactga agaacgcgat cacggtatgc agcgcgatcg
     1861 tgaagtagcg cgcaattggg tcgtgagtct cgatgccgta gaagtagtaa aggaagacga
     1921 gtacggtgac ggttacgacc agcaacacgg cgacgttcga gacgcgaaac catcgcggcg
     1981 agcgcgcgtc gagaaacatg agtgcgaagc cgaagaagat gaagttaagc gacgcggcca
     2041 cacccattcg gccgggaaac gacggacccg ccgccgcttc tgtttcggta aagagcaact
     2101 gatcgatgcc gatgttccaa ccggtcaaat gctggatcaa agtcaggaag ccgactagag
     2161 cgaccaggat cgcgaacaat tggcccgtgc gccgcttcca gttcgatgtt aaaggatcgc
     2221 gaagaagcag cagcgctgcg gaggtcagga tgagacaaac agcggtgttt gccttgatcg
     2281 tgacgagagc tggatgaata cgcttgagaa tctcgttgtc gaggatccag ccaagcaaac
     2341 caaccacgcc gatagacatc gtcagcaacg cgcacgcgac cgagatggtt cggtagcgta
     2401 ctaactgctg cggtgaatac tgcgaaagag attcgtacat cggctgatct ttttgcgaag
     2461 tttataccgt gcgcctgcgt tctcctaaac gcgtcgactt atgactcgcc gccgggatgt
     2521 ggcggcccgc gcggcatacg gcgtccccgc cggatgtgag gcggctcgtg gcctacggct
     2581 ccgccgccgg atggttgcgg ctcgcggcaa tacggattcg ccgccgatgg tggcggctcg
     2641 tggcctacgg cttcgccgcc ggatgtgagg cgaggctacg cctcgccggt tggctgataa
     2701 aaataaatcg ggctatgccc ctggtccggg cttcgcccga aaggccaaag gccgaacgag
     2761 gggcacagcc catttcctct actcaagtcc tgcggcgagg cagagcctcg cctcacatcc
     2821 ggcggcgaag ccgaagaggc gcggaccaat gccgcccgag attgactgcc gccgcgagtg
     2881 atgccgccgc gactgagcgc cgccaagact caatgcagcc caaactagtg gacggagtta
     2941 tcatgaagcc gctatgacag acactactca aaacgataag cacgcaattc gcgacatggt
     3001 tcgtacctgg ctcgaagcaa gtaaacgggg cgactcaaca actttgctga gcctcctcgc
     3061 agacgacgtg atctttatca ctcccggccg ggagccattt ggcaaagagg cgttccaagg
     3121 cgccgaggac cagatgaaag acatgaacat ggaagccgag atcgacatca aggagatcga
     3181 ggtggctgga ccatgggcgt ggatgcgcag ttttttaact gtaactttca cgccaaccgg
     3241 cggcgattcg agtagaatgt cgggccacat tctcaccgtc ctgcaaaagc aacccgacgg
     3301 ccggtgggta atcaaacgcg acgcgaactt tgttcaacca gaaacgacca aagggtaggt
     3361 acaagccacc taccccagtt ttctcgacca gcaagatgtt ccgaacgtct aaagttggac
     3421 agtaaatttg aaccggagga ccttattggt gagaagattc acgattttgg cggtagcggt
     3481 tttcagtttc ctgatcgttt ccaccggaag cactctcgca caacgccagt ggtatcgcgg
     3541 caatgtgcgc gaagttatca gagacctcga gtcagacacg gatcgttaca agggttcact
     3601 ggacaatgca ctcgatcgca gccggctcaa cggcagccgc acagaagacg agatcaacga
     3661 gcacgtaaag agatttgaag aagcaacgga ccacctgcgc gatcgcgctg aggatcgcca
     3721 gtacgcgccg aacctcgcgc gtgaagtcct caaccgcggc cgatcgatta acgtcttcat
     3781 gcgccggcat cgcctcggcg gccaggcaga atcggattgg gccaaggtgc gaaacgatct
     3841 gaaccggtta gcaaattcct actacatcaa ctggagatgg tgatagccct cagctatcac
     3901 cacccacatt actcagcc
//
LOCUS       DASWTX010000742         4119 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_182276, whole genome shotgun sequence.
ACCESSION   DASWTX010000742 DASWTX010000000
VERSION     DASWTX010000742.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4119)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4119)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4119
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182276"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3440)
                     /locus_tag="VGD38_11300"
     CDS             complement(<1..3440)
                     /locus_tag="VGD38_11300"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY0728648.1"
                     /translation="MRSTRNTRQSLVQICGVLLFALVAFPSAHAQTVVGRISGTIQDA
                     NGASVPNATVKVINSATNSERTVTSDDNGFYAVTNLPVGTYTIEAEQKGYKKALVSGQ
                     NVTADARLTVDIKLEAGDISETVEIVAAGGETVNTTSGEVSRLIDRQQVQNLALNGRN
                     FIQLLSLVPGVALINDDQLELTTSLATNNQSINGNRGQTNNVTVDGGFNLQSGSNASQ
                     VNNVGIDYIQEVKIQTSNFSAEYGRNSGAQVSLVTRSGGNDFHGSAFEFIRNDKLDAR
                     SFFAPVRPPLRFNNFGYSFGGPIFKDKLFFFGGQEWKYIRRLSSAQLRTVPTLAELNG
                     DFSRRLRGFDGVVGTADDGVLRDPNNAANTCVAPVVNAQGVVTTQAIRTGCFGGNNVA
                     LRNIIPTNRITADGLAIANVYRTAIGLAAAFNNNPVGNNVTFQQPNPLDYREDLLRID
                     YRINSKHSIYGRYIHDKNELIDPFGTFINTQLPTIPSLRRRPGTSMQISHTWMVTPTF
                     INEAKATGAIVAQRIPPAGDLWERETYGFQFQQLFTGGGRFENSIPDTTVNGFASFFG
                     AARSLVSPTTDINVSDTVTWVRGNHTLKTGVSVTRNRIDQNARTTYAGQVDFSTGGNN
                     RTTNNSFADALLGNFRTYSEQALDPVGFFRFTQTEAFIADSWKVNRKLSLELGMRYQY
                     GVPIYTQANNLANFDPALYNPAQAVTILANGTIDTTKGGNRFNGLVRAGNGVPAEELG
                     RVPNGDSATVLAVPAGAPRGLYEGHHYIMPRVGFAYSPFDDNKTSIRGGFGMYYDRIE
                     GNLIFPSLSNPPYATSAQFQNANLSNITGGSTTAAPFAQINAINPKLDTPYTMSYSLS
                     VQRELPYGIFAEAAYVGNLGRHLIRQPDINQPTFEQIRANLAGPNVNVNAIRPFKGYT
                     AIRMRLSDATSNYHGMQLYAAKRKGDLLMTTSYTWSKVLTDASGFNDNPEDPTNRDYN
                     YGPATFDRRHVFALTYTYTLNMFSRTRGFTRALLHGYEISGITRLQSGPYLTVTATGT
                     GTVGSALGNRRADCVSEDTLFPEGERGPRSWARRDAFAAAPDTRRGTCGVGTLLGPGA
                     QTWDFSLRRRFGLTERFKLQFQADIFNAFNRTNFRDLESNLNAGAFGQISTSGPPRNI
                     "
     gene            complement(3471..>4119)
                     /locus_tag="VGD38_11305"
     CDS             complement(3471..>4119)
                     /locus_tag="VGD38_11305"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEY0728649.1"
                     /translation="QIENSGKACALAQLWATRSDVVASGNSVFVSVSDGVGVGIVVNG
                     ELLRGRHNTAGEFGHVPLSIDGPRCSCGATGCWEAYVSNLATLSRYFGHDLADVRPRD
                     AETATFTVEDLIARARAGDAKALAALNSTARYLGLGLASIINSLDPARIYIGGEITTA
                     WSLIEPIVRGAVRERTLTDFGGTTEIHIVPAEEHPRLRGAVALVAAPAFAAPMVA"
BASE COUNT          792 a         1170 c         1273 g          884 t
ORIGIN      
        1 tgaatattcc gcggcggtcc cgacgtcgag atctgcccaa acgcgcccgc gttcagattg
       61 ctttccaggt cgcggaagtt cgtgcggttg aaagcattga atatgtctgc ctggaattgc
      121 aacttaaacc gctcggtcaa cccgaaacga cgccgcagcg agaagtccca cgtttgcgcg
      181 cccgggccca acaacgtccc cacgccgcac gttccgcgtc gcgtgtccgg cgctgccgca
      241 aacgcatccc gcctggccca actccgcggc ccacgctcgc cttcggggaa gagtgtatct
      301 tcgctgacac aatccgcgcg gcgattacca agcgccgaac cgaccgttcc ggtgccggtc
      361 gcagtgaccg tcaagtaagg ccctgactga agacgcgtga tgccgctgat ttcataaccg
      421 tgcagcaacg ctctcgtgaa gccgcgcgtc cggctgaaca tgttcagcgt gtaggtgtac
      481 gtcagtgcaa acacgtggcg acgatcgaaa gtcgctggtc catagttgta atcccggttg
      541 gttggatctt cgggattgtc gttgaagccg ctggcgtcgg tcagcacctt ggaccacgtg
      601 tacgacgtgg tcatcaacag atcgcctttg cgtttcgcgg cgtagagctg catgccgtgg
      661 taattcgacg tagcgtcact caaccgcatg cggatcgcgg tgtagccttt gaacggccga
      721 atggcgttga cgttgacgtt tggaccagcg agattcgcgc ggatctgctc gaacgtaggc
      781 tgattgatgt ccggctggcg aatcagatgc cggccgaggt tcccgacgta cgctgcttcg
      841 gcgaagatgc cgtacggcag ttccctttgc acgctgaggc tgtagctcat cgtgtaaggc
      901 gtgtcgagct tgggattgat cgcgttgatc tgcgcgaacg gcgccgctgt ggtcgagccg
      961 ccggtgatgt tcgacaggtt cgcgttctgg aattgagcgc tggtcgcgta cggcggattg
     1021 ctcagcgacg ggaagatcag gttgccttcg atgcgatcgt agtacatgcc aaagccgcca
     1081 cgaatcgacg tcttgttgtc gtcgaacggc gaataagcaa acccgacgcg cggcatgatg
     1141 tagtgatgac cttcgtaaag accacgcggt gcgccggccg gcactgcgag cactgtcgcg
     1201 ctgtcgccat tgggcacacg gcccagctct tccgccggca ctccattgcc ggcacgaacg
     1261 agaccattga agcgattgcc gcctttggtc gtgtcgatgg ttccgttcgc gagaatcgtt
     1321 acggcctgcg cgggattgta aagcgcggga tcgaagttcg cgagattgtt cgcctgcgtg
     1381 tagatcggca cgccgtactg gtaacgcatg ccgagctcga gactcagctt gcgattaact
     1441 ttccaactgt ccgcgataaa agcttccgtt tgcgtgaagc ggaaaaagcc gacgggatcg
     1501 agcgcttgct cgctatacgt gcggaagttt ccgagcaaag catcggcgaa cgagttgttc
     1561 gtagtgcgat tgttgccgcc ggtgctgaaa tccacctggc ccgcgtaagt ggtgcgtgcg
     1621 ttttgatcga tgcggttgcg cgtgacactc acaccggtct tgagtgtgtg attaccgcgc
     1681 acccacgtga ccgtatcgct gacgttaatg tcggtcgtcg gcgagaccag cgaccgcgcc
     1741 gcgccgaaga aactcgcaaa gccgttgacc gtcgtatcgg gaatcgagtt ttcaaaacgc
     1801 ccgccgccag tgaacagttg ctgaaactgg aatccgtacg tttcgcgttc ccagagatcg
     1861 ccggcaggcg gaatgcgttg ggccactatc gcgccggttg ctttcgcttc gttgatgaac
     1921 gtgggcgtca ccatccatgt gtgggaaatc tgcatcgacg tgcccggacg cctgcgcaaa
     1981 ctgggaattg tcggcaactg cgtgttgatg aacgtgccga atggatcgat cagttcgttc
     2041 ttgtcgtgaa tgtaacgacc gtagatactg tgcttcgagt tgatgcgata gtcgatgcgc
     2101 aacaggtctt cgcgatagtc gagggggttc ggttgttgga acgtcacgtt gttgccgacg
     2161 gggttgttgt tgaatgccgc ggcgagaccg atcgcggttc gataaacgtt agcgatcgcg
     2221 aggccgtcgg cggtgatgcg attcgtcgga atgatgttgc gcagcgccac gttgttgccg
     2281 ccaaagcagc cggttcgaat ggcctgtgtc gtgacaacgc cttgtgcatt gacgaccgga
     2341 gcgacgcagg tgttggctgc gttatttgga tcgcgaagca cgccgtcgtc cgccgttcca
     2401 accacgccgt caaaaccgcg cagccgccgc gagaagtcgc cgttgagctc cgcgagtgtc
     2461 ggcaccgtgc ggagttgcgc gctcgagaga cgccggatgt atttccactc ctgcccgccg
     2521 aagaagaaca gcttgtcttt gaaaatcgga ccaccaaaac tgtagccgaa attgttgaag
     2581 cgcaacggcg gccgcacagg tgcaaagaac gagcgcgcat cgagtttgtc gttgcgaatg
     2641 aattcaaacg cactgccgtg aaagtcgttg ccgccgctgc gcgtcacgag actgacctgc
     2701 gcgcccgagt tgcgcccgta ctcggcggag aagtttgacg tctgaatttt tacttcctga
     2761 atgtaatcga tgccgacgtt gttgacctgg ctcgcgttgc tgccggattg caggttgaaa
     2821 ccgccgtcga cggtgacgtt gttagtctgt ccgcgattgc cgttgatcga ctggttgttc
     2881 gtcgcgaggc tcgtcgtcag ttcgagctgg tcgtcattga tcaacgcgac gccgggaacg
     2941 agcgacaaaa gctggatgaa gttgcggccg ttcagcgcga ggttctgcac ctgctgtcga
     3001 tcgatcagac gcgagacctc gcccgaagtc gtgttcaccg tttcaccgcc agcagcaaca
     3061 atctcgaccg tttccgaaat atcgccggct tcgagtttga tatcgaccgt taggcgggcg
     3121 tcagcagtga cgttctgacc ggagaccagc gccttcttgt agcccttctg ttcggcttcg
     3181 atcgtgtacg tgccgacggg caagttggtc acagcgtaga aaccgttgtc gtcactcgtg
     3241 acggtgcgtt cggagttcgt cgcactgttg atgaccttca cggttgcgtt tggaacactc
     3301 gctccatttg catcctggat cgtgccggag atgcgtccca cgaccgtttg cgcgtgcgcg
     3361 ctcgggaaag cgacgagggc gaacaacaac acgccgcaaa tctgaaccag ggattgacgg
     3421 gtatttctgg tacttcgcat cgatctgaca cctccagttg attagagaat ttaggccacc
     3481 atgggcgcgg cgaatgcggg cgcggctacg agagcgacag cgccgcgcaa acgcgggtgt
     3541 tcttccgctg gtacgatgtg aatctcagtt gtgccaccaa agtcggtcag cgtgcgctcg
     3601 cgcaccgcgc cgcgcacgat gggttcgatc aggctccacg ctgtcgtgat ttcgccgccg
     3661 atgtagattc gcgccggatc gagtgagttg atgatcgacg cgagaccgag cccgagataa
     3721 cgcgcggttg aattgagcgc cgcgagtgct ttcgcatcgc ccgcacgcgc gcgggcaatc
     3781 aggtcttcaa ccgtgaacgt cgcggtttca gcgtcgcgcg ggcgcacgtc tgcaaggtcg
     3841 tgtccgaagt aacgcgacaa tgtcgcgaga ttcgaaacgt acgcttccca gcagccggtc
     3901 gcgccgcacg aacaacgtgg tccatcgatg ctcaaaggaa cgtgtccaaa ttcaccggcg
     3961 gtgttgtgac gcccgcgaag aagttcgcca ttcaccacga tgccgacgcc aacgccatcc
     4021 gacacgctta cgaaaacaga gtttcctgaa gcgacaacgt cgctgcgggt ggcccacagc
     4081 tgtgcgaggg cgcaggcttt accggagttc tcgatttga
//
LOCUS       DASWTX010000743         1793 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_163456, whole genome shotgun sequence.
ACCESSION   DASWTX010000743 DASWTX010000000
VERSION     DASWTX010000743.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1793)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1793)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1793
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163456"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..334
                     /locus_tag="VGD38_11310"
     CDS             <1..334
                     /locus_tag="VGD38_11310"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEY0728650.1"
                     /translation="GDRVGRDVFLVSITVDPAVDTPEKMKKYAQNFHAGPGWIFLTGK
                     KENLDWALYKLGQYVENKDDHKTILIVGNETTGLWKKAFAMANVAELVQVVESVVNDK
                     GGDKGATK"
     gene            345..>1793
                     /locus_tag="VGD38_11315"
     CDS             345..>1793
                     /locus_tag="VGD38_11315"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HEY0728651.1"
                     /translation="MKKHLFVLLIILALSVPLAAQSVDCGCEDKPLPDVLGVVNGVKI
                     TKQDLSAETRSRVEQLQRQVIEARQRELDLQIDSLLLENEAKKRGVTQSQIIKDEIIA
                     KVQTPTDADAQAFYDKNKASIKAEFKDEKNNIVEFLRYQRQQEEAQKFAERLRAAAQV
                     KVLAKPTAPALTSADRARVLAVVNNKQITMGDIEDSLRPLIFNVQEQVYALRKQDLEL
                     KINDTLLSQEAQKKGVTTRALLDAEVSAKVPAVTDAQAQEFYNQNKDRISGEFAALKT
                     QIVQYMKEEKEQAATLAYAEQLRRASKVEMNLSAPESPAFSIATDDQPVKGNAKALVT
                     IVEFTDFECPSCARQHPVLERIVSEFGDRVRLVVRDFPLSQHANARKAAEAAEAAREQ
                     GKYWEYASVLFRNQSALGVDKLRQYATEVGLDRARFDASLESGKFSDKVQRDVIDGRK
                     LGINGTPTLYINGRRLSDNSYETLKSAIEAALK"
BASE COUNT          439 a          454 c          568 g          332 t
ORIGIN      
        1 cggcgaccgc gtcggccgtg acgtttttct cgtgtcgatc acggttgacc cggctgtcga
       61 cacgcccgaa aagatgaaga aatacgcgca gaactttcac gctggtccag gatggatatt
      121 tctgaccgga aagaaagaga acctcgattg ggcgctctac aagttgggcc aatacgtcga
      181 gaacaaagac gaccacaaga cgatcctgat cgtcggcaac gaaacgaccg ggttatggaa
      241 gaaagcgttt gcgatggcga acgtggccga actcgtgcag gtcgtcgaaa gcgtggtcaa
      301 tgataaaggc ggcgataaag gcgccaccaa gtaacaggag tcttatgaaa aaacatttat
      361 tcgttctact aatcatattg gcgctgagtg tgccccttgc ggcgcagagt gttgactgtg
      421 gctgcgaaga caagccgctg ccggacgtac tcggcgtcgt caatggcgtg aagatcacga
      481 aacaggatct gagcgcggag acgcgttcgc gggtggaaca gttgcaacgg caggtgatcg
      541 aggcgcgcca gcgtgagctc gatttacaga tcgattcgtt gttgctcgaa aacgaagcga
      601 aaaagcgtgg cgttacgcag tcgcagatca tcaaggacga gatcatagcg aaggtccaaa
      661 cgccgaccga cgccgatgcg caggcgttct acgataagaa caaggcgagt atcaaagcgg
      721 agttcaagga tgagaagaac aacatcgtcg agtttctccg gtatcaacgg cagcaggaag
      781 aggcgcaaaa gttcgccgag cgtttgcgtg ctgcggcgca ggtgaaagtt ttggcgaagc
      841 cgaccgcgcc ggctttgacg agtgcggatc gtgcgcgtgt gttggctgtt gtgaataaca
      901 agcagatcac gatgggcgac atcgaagaca gtctgcgacc gttgatcttc aacgttcagg
      961 aacaggttta cgcgctgcgt aagcaggacc tcgagctgaa gatcaatgac acgttgctct
     1021 cgcaggaagc gcagaagaaa ggtgtcacta cgcgcgcgtt gctcgacgcg gaggtgagcg
     1081 cgaaagttcc ggctgtcacg gacgcgcagg cgcaggagtt ttacaatcag aataaagatc
     1141 ggatcagtgg tgagttcgcc gcgctgaaga cgcagatcgt tcagtacatg aaggaagaga
     1201 aggagcaggc agcgacgctt gcgtacgccg agcagttgcg gcgcgcgtcg aaggtcgaga
     1261 tgaatctgag cgcgccggag tcgccggcgt tttcgatcgc cacggacgat cagccggtga
     1321 agggaaacgc gaaggcgctg gttacaatcg ttgagtttac ggatttcgaa tgcccgagtt
     1381 gtgcgcgtca gcatccggtg ctcgaacgga tcgtgagcga gtttggcgat cgcgtgcggc
     1441 tcgtcgtgcg cgactttccg ctgtctcagc acgcgaacgc gcgcaaggct gcggaagctg
     1501 ctgaagcggc gcgcgagcag ggtaagtact gggaatacgc gagcgtgctt ttccgtaatc
     1561 agtcagcgct tggtgttgat aagctgcggc agtatgcgac cgaggtcgga ctcgatcgcg
     1621 cgcgcttcga tgcctcgctc gaaagcggaa aattctcgga caaagtccag cgcgacgtga
     1681 tcgatggccg caagctgggc atcaacggca ccccaaccct ctacatcaac ggcaggcgcc
     1741 tctccgacaa ctcctacgaa actctaaaat ccgccatcga agccgccctc aag
//
LOCUS       DASWTX010000744         1987 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_119170, whole genome shotgun sequence.
ACCESSION   DASWTX010000744 DASWTX010000000
VERSION     DASWTX010000744.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1987)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1987)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1987
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119170"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..991
                     /locus_tag="VGD38_11320"
     CDS             <1..991
                     /locus_tag="VGD38_11320"
                     /inference="COORDINATES: protein motif:HMM:NF012700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728652.1"
                     /translation="KKVLGADERIVQLETELFAGVCRQIAAETKRIQMTARALAALDA
                     LAAMAETSARRRYVRPVLHDGDELEIVQGRHPVIEAFIDEPFVPNSVYLNNSTDRLLI
                     ITGPNMGGKSTILRQTAIISILAQTGCFIPAERARLPLLDRIWTRVGASDDLTRGRST
                     FMVEMTETAAILHSATPRSLVLLDEIGRGTATFDGLSIAWAVAEYLHDSPDHAAKTLF
                     ATHYHELTELAERLPGAQNYQITATEREGEVVFLHKLERGRASKSYGIEVARLAGLPP
                     PVLATAREVLARLERYELEVFSDQEPGMEDKALIRAARRRVVAQASLFESESL"
     gene            complement(999..>1987)
                     /locus_tag="VGD38_11325"
     CDS             complement(999..>1987)
                     /locus_tag="VGD38_11325"
                     /inference="COORDINATES: protein motif:HMM:NF019912.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728653.1"
                     /translation="SRFGQKFWVKTKYATAVAAPTTLAVDPARTRRPENEEQAIHPLY
                     AYLYVVDRYEGLIVVNAATLLDGDPLNNYLKRAREAFNPNGVLTGANNITIAGMYAYI
                     TTEKALVVVDINDPLAPRVVGEIILKKPRSVAVQFRYGFVVDDEGLKVVDVTEPEKTR
                     LVEGAFVPLGDAHDVYVARTYAYVANGKDGVAIVDVEQPERPRLDQVFNAGGQLNDVH
                     QVKIAMTNASLFAYVADGKNGLRILQLTSPETMPEYAGFSPRPRPELIATFKTKGDAL
                     AISKGLDRDRAADESGNQISVFGRRGARPFTFDEMMRLLRTNDGKGEWFKVK"
BASE COUNT          422 a          694 c          487 g          384 t
ORIGIN      
        1 aaagaaagtg ctcggcgctg atgagcgcat cgttcaactg gagaccgaat tattcgctgg
       61 tgtgtgccgg cagattgccg ccgagacgaa acgcattcag atgacggccc gcgcgctcgc
      121 ggcgctcgac gcgctcgctg cgatggccga gacctccgcg cggcgccgct acgttcggcc
      181 ggtgctacac gacggcgatg agttggagat cgttcaaggc cgacacccgg tgatcgaagc
      241 gttcatcgac gagccgttcg tgccgaatag cgtctatctc aacaactcaa ccgatcgcct
      301 gctgatcatc actggtccaa acatgggtgg caagagcacg atcctgcgcc aaacagccat
      361 catcagcata ctcgcgcaga ccggttgttt cattcccgct gaacgcgcgc gactcccgtt
      421 gctggatcgc atctggacgc gcgtcggcgc ttcagacgat ctcacgcgcg ggcgttcgac
      481 gttcatggtc gagatgactg agaccgccgc gatcctgcac agcgccactc cgcgttcgct
      541 cgtattgctc gacgagatcg gacgcggcac cgcgacgttt gatgggctct cgatcgcgtg
      601 ggccgttgct gaatacctgc acgattcacc ggatcacgca gccaaaacac tcttcgccac
      661 gcactaccac gagctcaccg agctcgcgga acgtttgccc ggcgcgcaga actaccagat
      721 caccgccacc gagcgcgaag gcgaagttgt cttcctccac aaactcgaac gcggtcgcgc
      781 ctccaaatcc tacggcatcg aagtcgcgcg cctcgccggc ctccctccac ccgtcctcgc
      841 caccgcacgc gaagtcctgg cgcgtcttga acgttacgag ctcgaagtct tttccgacca
      901 ggaaccgggg atggaagaca aggcattgat ccgcgccgca cggcgacgag tagtagcgca
      961 agcgtcgctc ttcgaaagcg aatctctgtg aactccgctt acttaacctt gaaccactcg
     1021 cccttgccgt cgttggtcct gagcaaccgc atcatctcgt caaacgtgaa cggacgcgcg
     1081 ccgcgacggc cgaacaccga gatctgattc ccactctcgt cagcggcgcg atcccgatcg
     1141 aggcccttcg aaatcgctaa cgcatcccct ttggtcttga acgtcgcgat cagctccggc
     1201 cgcggccgcg gactaaaccc cgcatactca ggcatcgtct cgggcgacgt gagctgcaag
     1261 atcctcaatc cgttctttcc atcagccacg tacgcaaaca ggctcgcgtt cgtcatcgcg
     1321 atcttcacct ggtgcacatc attaagctgc ccaccggcat taaacacctg gtccaaccgc
     1381 ggccgctccg gctgttcgac atcgacgatc gcaacaccgt ctttcccatt cgcgacgtac
     1441 gcgtaagtcc gcgcaacata aacatcgtgc gcatcaccca acggaacaaa cgcgccctcc
     1501 accagtcgcg tcttctccgg ctcggtcaca tcaacaacct tcaacccctc atcatcaacc
     1561 acaaatccat atctaaattg aacagccacg ctccgcggct tcttcaaaat aatctctcct
     1621 actacacgtg gcgccagcgg gtcgttaata tcaacaacaa ccaatgcctt ctctgtcgta
     1681 atgtacgcat acatacccgc gatcgttatg ttgttcgcac ccgtcaacac accattcgga
     1741 ttgaacgcct cacgcgcgcg cttcaaatag ttgttcagcg gatcgccgtc caacaacgtc
     1801 gccgcgttaa ctacgatcaa cccctcatac cgatctacca catacaaata cgcatacagc
     1861 ggatgtatcg cctgctcttc attctcgggc cgccgcgtcc gcgcgggatc cacggccagc
     1921 gtcgtcggcg ccgccaccgc cgttgcatac ttcgtcttca cccaaaactt ctgcccaaac
     1981 cgcgaca
//
LOCUS       DASWTX010000745         3207 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_361475, whole genome shotgun sequence.
ACCESSION   DASWTX010000745 DASWTX010000000
VERSION     DASWTX010000745.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3207
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_361475"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            72..569
                     /locus_tag="VGD38_11330"
     CDS             72..569
                     /locus_tag="VGD38_11330"
                     /inference="COORDINATES: protein motif:HMM:NF017015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY0728654.1"
                     /translation="MKVIDWLAKQFDQETKTTRRHLERLPEDKLDWQPHEKSYTAGAL
                     ASHLVECVNWTTDIFTKNEVNFDPATYKPYLAASTTELLEAFDKAVADGKRVLEGIDD
                     EAAMQLWSLKFGGRTLFERPRMDVFRDFTLSHLIHHRGQYSVYLRLLNVPVPSTYGPT
                     ADEQG"
     gene            complement(571..1674)
                     /locus_tag="VGD38_11335"
     CDS             complement(571..1674)
                     /locus_tag="VGD38_11335"
                     /inference="COORDINATES: protein motif:HMM:NF010539.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEY0728655.1"
                     /translation="MSFISKTAAFMGMGSLRNLVSDSIAIDMGSHATIIYVRGTGVVI
                     DQPSLVAVNNITGEVVAVGLEARAMYGREARDITVVAPLLNGVVADFERTREMLAYFV
                     REARSGSSFFSRRALMSVYPGVTHVERRALLTAAEHARIGRVMMMDEGLAAAFGAGVK
                     LDDVRASAMVEIGSGTTNVTVVGNGAIIHSRAERIGSADINTAIINHVRRHRGLAIGP
                     PSAERLKIELASATLPDDLGREITVRGRDVVTGSPGAITITAGEIYPVAQYVVAKIVD
                     GVSATLAELSPEVAGDIYDRGLILTGGGALFEGIAEYMTEQTKLAVRVADEPRYATVR
                     GLARMFDDPLLLRRVVRSESPPLLDEENEAYSL"
     gene            1744..3075
                     /locus_tag="VGD38_11340"
     CDS             1744..3075
                     /locus_tag="VGD38_11340"
                     /inference="COORDINATES: protein motif:HMM:NF004718.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY0728656.1"
                     /translation="MATTKPDTMTGEQIVELSRRHTIFEWSVQSAVDPIPVAHAKGIY
                     FYTPEGKRFIDFNSQLMCVNIGHSDERVVRAIQKQAETLSYANPFMATEVRARLAAKL
                     AEITPGDIDTFFFTNGGAEANENAIRIARMFTGRHKIGARYRSYHGGTAGVLTLTGDP
                     RRWGAEPGIPGVFRIPDFYHGIQKGFDTTEEVLARTEETIELEGPKTIAAIIVEPVVG
                     TNGILIPPDGYMQGLRALCDKHGIMLIADEVMAGFGRTGEWFSMDHWNVVPDLISMAK
                     GLTSAYVQLGAVGMRRQIAEHFQKNFFYGGLTYNSHPLACAAGLATIAVYEEDKLIEN
                     AREMGKLMRTLMEDLQNRHPSVGATRNIGLFGIFELVRNRDTREPLAPFNGTSPEMQA
                     LGKFFRQEGLYTFVRWNTFFTNPPLCINEAELREAFAIIDRGLEITDQAAS"
BASE COUNT          674 a          968 c          949 g          616 t
ORIGIN      
        1 ctgtaggtag aaacttgaag taccaccaac cttgttggtg ggttcctgat acccaaccta
       61 aggagcagag catgaaagtc atcgactggc tggcgaagca gtttgatcaa gaaaccaaga
      121 ccacgcgcag gcatctggag cgcttgccgg aggacaagct ggactggcag cctcatgaaa
      181 agtcgtacac cgcgggcgca ctggcgtcgc acctcgtaga gtgcgtgaat tggaccacgg
      241 acatcttcac gaagaacgaa gtgaacttcg atcccgcgac ctacaaaccg tacctcgccg
      301 cctcaaccac cgagctgctc gaggcttttg acaaagctgt agcggacggc aaacgcgtgc
      361 tggaaggtat tgacgacgag gcggcgatgc aattgtggag tctgaagttc ggtggcagga
      421 cgctgttcga acgcccccgg atggacgtct tccgcgactt cacgttgagc cacctgattc
      481 accatcgcgg acagtattcg gtttatctcc gtctactgaa cgtgccggtg cccagcactt
      541 acggcccaac ggctgacgag cagggttgac ctacaacgag tacgcctcgt tttcttcgtc
      601 caacaacggc gggctttcgc ttcggaccac gcggcggaga aggagcggat cgtcgaacat
      661 gcgcgccagg ccgcgaacgg tcgcgtagcg gggttcgtcg gcgactctca ccgccagttt
      721 tgtttgttcg gtcatgtact cggctatgcc ttcaaacaac gccccgccgc cggtgagaat
      781 gaggcctcga tcgtagatgt cgccggcgac ttcaggcgac agttcggcaa gtgtcgcaga
      841 gacaccgtcg acaatcttcg ccaccacata ctgcgcgacc ggatagatct ctcccgccgt
      901 aatggtgatt gcgccgggac tacccgtaac cacgtcgcgc cctcggacag tgatttcgcg
      961 ccccagatcg tcaggcaagg ttgctgaagc gagctcgatc ttgagccgtt cggctgatgg
     1021 tggaccgata gccaacccgc gatggcgtcg cacgtggttg atgatggcgg tgtttatgtc
     1081 cgcgctgccg atgcgttccg cacgcgagtg aatgatcgct ccgttgccaa caaccgttac
     1141 gtttgtcgtg ccactgccga tttccaccat cgctgacgca cgtacgtcgt ccagctttac
     1201 ccccgcgccg aaagccgcgg cgagtccttc atccatcatc atgacgcgtc cgatgcgcgc
     1261 gtgctccgct gcagtcaaca acgcccggcg ttcgacgtga gtcacacccg gatacacgct
     1321 catcagcgcg cggcggctga agaacgacga cccactgcgc gcctcgcgca cgaagtacgc
     1381 caacatctcg cgcgttctct cgaagtcagc cacgacgccg ttgagcaacg gcgcaactac
     1441 cgtgatgtcg cgcgcctcgc gcccatacat cgcgcgcgct tcgagaccaa ccgcaaccac
     1501 ttcgccggta atgttgttga ccgccaccag cgacggctgg tcgatcacga caccggtgcc
     1561 gcgcacgtaa atgatcgtcg catgggaacc catgtcgatc gcaatcgaat cggaaaccag
     1621 gttccgcagc gaacccattc ccatgaacgc cgctgtctta ctgatgaagc tcatgtcaga
     1681 cggatgattg tgtaaacgtt gtggcgttgt caatcgccgc cgatttgagt agcatcccgg
     1741 gccatggcta caacaaaacc tgacacgatg acgggcgagc agatcgtcga actctcgcgg
     1801 cgtcacacca tttttgaatg gtccgttcaa tcagccgtcg acccgattcc cgtggcgcac
     1861 gccaagggca tttacttcta cacgccggaa gggaaacgct tcatcgactt caacagccag
     1921 ttgatgtgcg tcaacatcgg gcacagcgac gaacgcgtcg tacgcgcgat tcagaagcaa
     1981 gccgagacgc tgtcatacgc gaacccgttc atggcgaccg aggtacgcgc gcggctggcg
     2041 gcaaaactcg ccgagatcac gcctggcgac atcgacacgt tcttctttac caacggcggc
     2101 gcggaggcga acgaaaacgc gatccgcatc gcgcgcatgt tcaccggacg ccacaagatc
     2161 ggcgcgcgtt atcgctcgta tcacggcggc accgcgggcg tattgacgct gacgggcgat
     2221 ccgcggcgtt ggggcgccga gccgggcatt ccgggcgtgt ttcgcattcc ggatttctat
     2281 cacggcattc agaagggctt tgacacgact gaagaagtgt tggcgcgtac cgaagagacg
     2341 atcgaactcg agggaccgaa gacgatcgcc gcgatcatcg tcgagccggt ggttggcaca
     2401 aacggcattc tcattccgcc tgacggttac atgcagggac tgcgcgcgct gtgcgacaaa
     2461 cacgggatca tgctcatcgc ggatgaagtg atggccgggt ttggtcgcac cggcgagtgg
     2521 ttttcgatgg accactggaa cgtcgtgccg gatttaatat cgatggcgaa gggattgacg
     2581 agtgcttacg ttcaactcgg cgcggtcggc atgcgacgcc agattgccga gcacttccag
     2641 aagaacttct tttacggtgg tttgacgtac aacagtcatc cactcgcttg cgccgccggt
     2701 ctcgccacga tcgccgttta cgaggaagac aagctgatcg aaaacgcgcg cgagatgggc
     2761 aagctgatgc gcacgctcat ggaggatctg caaaatcggc atccgtcagt cggggcgacg
     2821 cgcaacatcg gcctgttcgg aatttttgag ctggtacgaa atcgcgacac ccgcgagcct
     2881 ctcgcgccct tcaacggcac gtcacccgag atgcaggcgc tgggcaagtt tttccgtcag
     2941 gaaggactct acaccttcgt gcgctggaac acgttcttca cgaacccgcc gctctgcatc
     3001 aatgaagcgg agctgcgcga agcgtttgcg atcatcgaca gagggctgga gattaccgac
     3061 caggcagcaa gctaaagctt agtgtactta ggaagcggct tcgctgcggt ttagaggcac
     3121 ggcagcgctg cgatttagag gcacggcttc gctgcggttg gaggagcggc ttcgccgccg
     3181 gatgtgaggc gaggctccgc ctcgccg
//
LOCUS       DASWTX010000746         4288 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_226038, whole genome shotgun sequence.
ACCESSION   DASWTX010000746 DASWTX010000000
VERSION     DASWTX010000746.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4288)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4288)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4288
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_226038"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            43..474
                     /locus_tag="VGD38_11345"
     CDS             43..474
                     /locus_tag="VGD38_11345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728657.1"
                     /translation="MSSPYHKEEPSNPERIDDLMLRDDDDRDAHDDQGRTASSVRDIA
                     SRIPESLSAIGRDISRTIEKAISAKDDYVVAVKISPEAQEKLEALVQAGVFRSRAEAA
                     GFLIDEGIKTQSALFERVRQKLAEIERLRAELRGLIADNKV"
     gene            599..2077
                     /locus_tag="VGD38_11350"
     CDS             599..2077
                     /locus_tag="VGD38_11350"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEY0728658.1"
                     /translation="MADTFQLPPTPIEEFTLANGLRVVLSPDRAIPVVSVAVYYDVGS
                     RNEREGRTGFAHLFEHMMFQGSENVPKAAHFQYIFNAGGTMNGTTSTERTNYFETLPS
                     NYLPLAFWLESDRMRSLKVTQENLDNQRHAVQEEKRLRYDNQPYVNAFLLMNELIFTN
                     PANAHSTIGSMEDLDAATIDDVREFFRIYYAPNNAVLSVVGDFDNAEARALADKYFGN
                     IPSQPLPPPVDVSETENVAATEETYHDPLAPAPAFVLGWKVPARRTPDFYALSLAGTL
                     LFEGDSSRLYQKLVKGDESVISIEGGVDERRGPSALYIFALPKPGQEVTTIRSQIFDE
                     IKRIAADGPTEAEMEKLRNSLCNDAVRGRQSTMYRAQRLAEFALYDSNPRLVDSELDH
                     YLNVTAEDIKRATSKYLDSPNRVVLDIVPAPAAEAEEATAASPQPPAEAHQPASPAPQ
                     IPGVPAPEPAVDVPHVKPATSPEQPKDPADVQPPTESGPVHV"
     gene            2121..3815
                     /locus_tag="VGD38_11355"
     CDS             2121..3815
                     /locus_tag="VGD38_11355"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY0728659.1"
                     /translation="MSQPEPFRSQAPAPLPPRPITIPAAHETVLPNGLTIVVVEDKRL
                     PLVSYRLAFRVGGAFDPPDLPGLTDLLAGLLPEGTVSRTSREIADEVARMGASISAGA
                     NSDYTIVGASALNFFNDQILDLMAEIVLQPSFPENEVELAKQNTKESLRQQRAQPSFL
                     ASEMVSRVMFGQHPYSVVAPTPESVDRSSRDEFVRFHREKFVPNSAVFIVVGDVKHEE
                     IVKRIESLFSTWERGADLVTNFPAPPVRTRRTAYVVDRRGSAQSNIVVANSGILRTSP
                     DYFPMLLMHTVLGANASSRLFMNLREEKGYTYGAYTNLDARRTAGTFRATAEVRTPVT
                     GDSLKEFFYELNRIRTDLVSEKEIKDAKSYLTGVFPIRLETQEGLTDQLVQIKMLNLP
                     DNYLDHYRDRVQAVTVGDIQRVATKYVKPDEAAVIIVGDGANVLEQIKPYVGDIEVYS
                     TSGKRKSLDAPPSTDIVGSWSIEVETPLGQSIPATLTLTREGDGFAAKISSDMGNADL
                     GVVNLTDNSFQKTTFLEMDGHQVEAEVSARFQGDQTEGTLKLENSPLLAFTGSKDD"
     gene            complement(3964..>4288)
                     /locus_tag="VGD38_11360"
     CDS             complement(3964..>4288)
                     /locus_tag="VGD38_11360"
                     /inference="COORDINATES: protein motif:HMM:NF026220.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YCF48-related protein"
                     /protein_id="HEY0728660.1"
                     /translation="YHVDFRNDDKGWVVGARGMLLRTTDGGETWVAAHTNAKVTLLSV
                     QFVNDDDGWAIGRGGTILRTSDEGRTWTTQESTTKQNLYSLHFNKKIGWTVGGEGIIL
                     RYERD"
BASE COUNT          958 a         1265 c         1213 g          852 t
ORIGIN      
        1 cggacagtgg aattcagaag ttactaaagg agtcttttcg aaatgagcag tccgtatcac
       61 aaagaagaac cctccaatcc ggaacgcatt gacgacctga tgctgcgcga cgacgacgac
      121 cgtgacgcgc acgacgatca gggccgcacc gcctcttcgg tgcgcgatat tgcctcgcga
      181 attccggagt cgttgagcgc gatcggccgg gacatcagca gaactatcga gaaggcgatc
      241 tcagcgaaag atgattatgt tgtggcagtg aagatttcgc cggaagcgca ggaaaaattg
      301 gaggcgttgg tccaggcggg cgtgttccgc agccgcgccg aggcagcagg atttctaatc
      361 gacgaaggta tcaagactca atcggcattg tttgaacgcg tcagacaaaa actcgccgag
      421 attgaacggc tgcgcgcaga actccgcggc ctgatcgccg acaacaaggt ttgaaactca
      481 cgaactgaga cgcgctcgta attcgggcac aaccaattaa ccacccccca aagcagtgct
      541 ttaccagtcc tctcaaacgg taaagcacgt ctttgtttct gatagagaaa acaaactcgt
      601 ggcagacacg tttcaattac cacctacacc aatcgaagaa tttactctgg ccaacggttt
      661 acgtgtggtc ctgagtcccg accgtgcgat tccagtcgtt tccgtcgccg tgtattacga
      721 cgtcggctcg cgcaacgaac gcgaaggacg caccggtttc gcgcacctct tcgaacacat
      781 gatgtttcag ggttcggaga atgttccgaa ggcggcccat ttccagtaca tcttcaacgc
      841 cggtgggacc atgaatggga ccacctcaac cgaacgaacc aactacttcg agacgttgcc
      901 gtcaaactat ctgccgctgg ctttctggct cgagagcgat cgcatgcgct cgctgaaagt
      961 gacgcaggag aacctcgaca accagcgcca tgccgtgcag gaagaaaagc gcctgcgtta
     1021 cgacaatcaa ccgtacgtga acgcgtttct gctcatgaac gagttgattt tcactaaccc
     1081 ggcgaatgcg cactcgacga tcggttcgat ggaagatctc gacgccgcga caatcgacga
     1141 cgtgcgcgag tttttccgga tttattacgc gccgaacaat gctgtgttgt cagtcgtcgg
     1201 cgactttgat aacgctgagg cgcgtgcttt ggccgacaag tactttggca acattccgtc
     1261 gcagccgtta ccgccgccgg ttgacgtttc ggaaactgaa aacgtcgcgg caacggaaga
     1321 gacgtatcac gatccgctcg cgcccgcgcc ggcgtttgtg ctcgggtgga aagttccggc
     1381 gcgacgtacg cctgactttt acgcgttgtc gctcgcgggc acgttgttgt ttgaaggtga
     1441 cagttcgcgg ctttatcaga agttggtgaa gggtgatgaa tcggtcatct cgatcgaagg
     1501 cggcgtcgat gaacgacgtg gcccatcggc gctctacatc ttcgcgttgc ccaagccggg
     1561 ccaggaagtg acaacgattc gcagccagat cttcgacgag atcaagcgga tcgcggctga
     1621 tggtccaacc gaagccgaga tggagaaatt gcgtaattcg ttgtgcaacg atgctgtgcg
     1681 tgggcggcag tcgacgatgt atcgcgcgca gcggcttgcg gagtttgcgc tttacgattc
     1741 gaatccgcgt ctggtggatt cggagttgga ccactacctg aacgtgaccg ctgaagacat
     1801 caaacgggcg acctcgaaat atcttgatag tccgaatcgt gtcgtgctgg acatcgtgcc
     1861 ggcgcccgcc gcggaagctg aagaagcgac agccgcttca ccgcagccgc ccgcggaggc
     1921 gcatcagccc gcgtcgcctg cgccgcaaat tccgggagtg ccggcgccgg aaccggcggt
     1981 ggatgtcccg catgtgaaac cggcgacatc tccggaacaa ccaaaagatc ccgcggacgt
     2041 acagccgcca acggaatcag gaccagttca cgtgtaacac atcccaccga cggagtcggt
     2101 ggttcgttca tacgcaacct atgagtcaac cagaaccttt tcgtagccag gcgcccgcgc
     2161 cgctaccacc aagaccaatc actattcccg cagcacatga gaccgtgctg cccaacgggc
     2221 tcacgattgt tgttgtcgaa gacaaacgtc tgcctttagt cagctaccgg ctggcatttc
     2281 gcgtcggcgg cgcgttcgat ccgcccgact tgccgggtct cacggaccta ctcgccggac
     2341 tactacccga aggaaccgta tccagaacga gccgcgagat cgccgacgag gtcgcgcgca
     2401 tgggcgcgag tatttctgcc ggcgcgaatt ccgactacac catcgtcggg gcttccgcgc
     2461 tcaacttttt caacgaccag attctcgact taatggccga gatcgttttg cagccgtcat
     2521 tcccggaaaa cgaagtcgaa ctcgcgaaac aaaacacgaa ggaaagcctg cgccaacaac
     2581 gcgcgcagcc atcgtttttg gccagcgaga tggtgtcgcg tgtgatgttc ggccagcacc
     2641 cgtactcggt cgtcgcgccc acgccggagt cggtagatcg ttcatcgcgc gacgagttcg
     2701 tgcggtttca ccgcgagaag ttcgtgccga acagcgccgt gttcatcgtc gtgggtgacg
     2761 ttaagcacga agagatcgtg aagcgcatcg agtcgctgtt ttcgacgtgg gaacgcggcg
     2821 cagatctcgt aactaacttc cccgcgccgc cggtccgaac caggcgcacg gcctatgtcg
     2881 tggatcgacg cggctcggcg cagtcaaaca tcgtcgtcgc caacagcggc atcctgcgca
     2941 ccagtcccga ctactttccc atgctgctga tgcacaccgt gctcggcgct aacgcctctt
     3001 cgcggctgtt catgaacctg cgcgaagaaa agggctacac ctacggcgct tacacaaacc
     3061 tcgacgcacg cagaactgcc ggcacttttc gcgcgaccgc cgaagtgcgc acacccgtca
     3121 ccggcgattc gctgaaagag ttcttttacg agttgaatcg catccgcacc gacctggttt
     3181 ccgagaagga gatcaaagac gcgaagtcgt atctgacagg cgtgtttccg atccggctcg
     3241 aaacgcagga aggactcacg gatcaactcg tgcagatcaa gatgttgaat ctgccggaca
     3301 actacctgga tcactaccgc gatcgcgttc aggccgtgac tgtcggagac attcaaagag
     3361 tcgccacgaa gtacgtcaaa cctgacgaag cagcagtgat catcgtcggc gacggcgcga
     3421 acgtgctcga acagatcaag ccatacgtcg gcgacatcga ggtctacagc acgagcggca
     3481 aacgaaaatc tttggacgca ccgccaagca ccgacatcgt gggatcgtgg tcgatcgaag
     3541 tcgagacgcc gctcgggcaa agcatccccg ctacactcac gctcacgcgt gaaggcgacg
     3601 ggttcgcagc gaagatctct tcggacatgg gtaacgcgga tttgggcgtg gtgaatctca
     3661 ccgataattc gtttcagaag accacgtttt tggaaatgga cgggcaccag gtagaggctg
     3721 aagtgtccgc gcgttttcag ggtgaccaga cggaaggcac gctcaagctg gaaaactcgc
     3781 cattgctcgc gttcaccgga agcaaagacg actgaaagca acccgtgatt agtaacttca
     3841 catcaaaggc ctcgaggtta aacggatcgc cgcaaggata gcgacgacca taacactcgg
     3901 ttcctcctgt gatttacgcc cggtatgtcg gccatgccgg gcgttttgtt ttgcccgcgg
     3961 ttctcagtcg cgctcgtagc gcaggatgat gccctcgccg ccgaccgtcc agccgatctt
     4021 cttgttgaaa tgcagcgagt aaaggttttg cttagttgtc gactcttgcg tcgtccaggt
     4081 tcgtccctcg tcgctggtgc gcaggatggt tccgccacgg ccgatcgccc agccgtcgtc
     4141 gtcgtttaca aactgcacgc tgagcagcgt cacctttgcg ttcgtgtgcg ccgccaccca
     4201 cgtttctccg ccgtcggtcg tgcgcaacag catgccgcgc gcgccgacga cccaaccctt
     4261 atcatcgttg cgaaaatcga cgtgatac
//
LOCUS       DASWTX010000747         1699 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_226052, whole genome shotgun sequence.
ACCESSION   DASWTX010000747 DASWTX010000000
VERSION     DASWTX010000747.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1699
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_226052"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1040)
                     /locus_tag="VGD38_11365"
     CDS             complement(<1..1040)
                     /locus_tag="VGD38_11365"
                     /inference="COORDINATES: protein motif:HMM:NF014044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
                     /protein_id="HEY0728661.1"
                     /translation="MQEFEKLGAFYLGRPYDLENKKPKEGLLLYDSKDLVTHAVCVGM
                     TGSGKTGLCITLLEEAAIDAIPAIIIDPKGDLSNLLLTFPNLATEDFAPWTNEGEDAA
                     QKAQLWKDGLASWGQDGERIKRLRDAAEFRVYTPGSNAGIPVSILKSFDAPNETVRQD
                     NELLGERINTTATSLLGLIGITADPLRSREHILISNILNHEWSNGRNLDIASLIQQIQ
                     NPPMTKIGVMELDSFFPAGDRMELAMALNHLLASPSFASWMEGEPLDVQQLLYTSAGK
                     PRLSIFSIAHLGDAERMFFVSLLLNQVLGWMRTQSGTTSLRAIVYMDEIFGYFPPVAN
                     PPSKQPLLTLLK"
     gene            complement(1027..>1699)
                     /locus_tag="VGD38_11370"
     CDS             complement(1027..>1699)
                     /locus_tag="VGD38_11370"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY0728662.1"
                     /translation="VTQTFGLGMFEPFTAEHFDRLEQFFFERGADTFHEVCPLADPST
                     FTLFSERGYKPIEFSNVLYRPISTDLRLDASRNEQIKVRRTGKDEIDLWADTAFEGWN
                     EFTEVADFLRDLGQVVARSQSLSFLAELDGKPIAAGALSIVGDVALLAGASTIPSARR
                     QGAQLALLEERLRYGAAHGCTVAMMVTQPGSGSQRNSERHGFRIAYTRTKWQLQRGNN
                     QDAGI"
BASE COUNT          314 a          485 c          531 g          369 t
ORIGIN      
        1 tgcttcagca gcgtgagcag cggctgcttg ctcggcgggt tcgcgaccgg cgggaagtag
       61 ccgaagatct cgtccatgta gacgatcgcg cgcaaactcg tcgtgcccga ctgcgtccgc
      121 atccaaccca acacctggtt cagcagcagg gaaacgaaaa acatgcgctc agcgtcgccg
      181 aggtgcgcga tcgaaaagat cgacagccgc ggcttgcccg ccgatgtgta gagcaactgc
      241 tgcacgtcga gcggctcgcc ttccatccag ctcgcgaaac tcggcgacgc gagcaggtgg
      301 ttcagcgcca tcgcgagttc catgcgatcg ccggccggga agaacgagtc gagctccatc
      361 acgccgatct tcgtcatcgg tggattttga atctgttgaa tcaacgaagc gatgtcgagg
      421 tttcgcccgt tggaccactc gtgattgagg atgttcgaga tgaggatgtg ttcgcggctg
      481 cgcaacggat cggccgtgat gccgatcagt ccgagcaggc tggtcgcggt ggtgttgatt
      541 cgttcgccga gtagttcgtt gtcctgccgg acggtttcgt tcggagcgtc gaatgatttg
      601 agaatcgaaa cgggaatacc ggcgttgctg ccgggcgtgt agacgcgaaa ctccgcggcg
      661 tcgcgcaggc gtttgatacg ttcgccgtcc tggccccagc ttgcgaggcc gtctttccag
      721 agttgcgctt tttgtgcggc gtcttcgcct tcgttggtcc acggcgcgaa gtcttctgta
      781 gcgagattcg gaaatgttag cagcaggttg ctgaggtcgc cctttggatc gatgatgatt
      841 gccgggatcg cgtcgatggc ggcttcttcg agcaacgtga tgcacagacc ggttttgccg
      901 ctgccggtca tgccgacgca cacggcgtgc gtcacgagat ctttcgagtc gtaaagcagc
      961 agaccttctt tcggtttctt gttttcgaga tcgtagggac ggcccaggta gaacgcgccc
     1021 agcttctcaa attcctgcat cctgattgtt tcccctctgt agttgccact tggttcgcgt
     1081 gtaagcgatg cgaaatccgt gacgttcgga attgcgttgc gagccgctgc cgggctgcgt
     1141 gaccatcatc gcgacggtgc agccgtgcgc cgcgccgtaa cgcaggcgtt cttcgagcaa
     1201 cgcgagttgt gctccctggc ggcgcgcgct tggaatcgtg ctcgcgcctg cgagcaatgc
     1261 gacgtcgccg acgattgaaa gcgcgccggc ggcgatcggt ttgccgtcta actcggcgag
     1321 gaacgaaagc gactgtgagc gcgccacgac ctggccaaga tcgcgcaaga agtcagccac
     1381 ttcagtaaac tcgttccaac cctcgaatgc cgtgtctgcc cacaggtcga tttcgtcctt
     1441 gcccgtgcgc cgcactttta tctgctcgtt gcgcgatgcg tcgaggcgca agtcggttga
     1501 gatgggccgg tacagcacgt ttgaaaactc gatcggcttg tagccgcgct cgctgaacag
     1561 tgtgaacgtg gatggatccg cgagcgggca cacttcgtga aaagtatcag cgccacgttc
     1621 gaagaaaaac tgttcgagtc gatcgaagtg ttccgcagtg aacggctcaa acatgcccaa
     1681 gccaaacgtc tgcgtgacc
//
LOCUS       DASWTX010000748         1523 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_163597, whole genome shotgun sequence.
ACCESSION   DASWTX010000748 DASWTX010000000
VERSION     DASWTX010000748.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163597"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            412..1089
                     /locus_tag="VGD38_11375"
     CDS             412..1089
                     /locus_tag="VGD38_11375"
                     /inference="COORDINATES: protein motif:HMM:NF039204.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5715 family protein"
                     /protein_id="HEY0728663.1"
                     /translation="MLERREMVPVPGVTETYVLYGVAQRVDDSEFTSEPGVTPDYGPI
                     QALAKNFAGRSYDFNVPADRAALKSNMLSSLRPAALKILEEVAAAYHKQFNRPLPVSS
                     LVRPEQYQRALARVNRNAVKIDTPPHSTGLAFDIDYRYMTGAEQSFVMTELARLKNAG
                     RIEAIRERNANYHVFAFINGTRPNDALIESKLEEAMPPGVAANKTVEKTKPKPKKATR
                     PKRKRRR"
     gene            1181..>1523
                     /locus_tag="VGD38_11380"
     CDS             1181..>1523
                     /locus_tag="VGD38_11380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728664.1"
                     /translation="MKNGKVHIALIVVVLAAVIGVVSFSGRSSNLGQAAQSKNESRVK
                     STSRVADRPSTATTAKASTVAFAAAASRNAALRNEVTWTFGGKQQRGWSLYELLISKT
                     LKTPEDAGTSDF"
BASE COUNT          353 a          402 c          449 g          319 t
ORIGIN      
        1 aagtctgcta atgatactcc tttctgatca ggtgtcaacc gccaatttgc aatggttctt
       61 gctagtctgt tgcggtgaga tttcgttcta attatgaaga aagctttggt cattgctgtc
      121 gtagttatcg gattagccgt ctggtccgta cggcatttca gaggtctgaa gcgcctgccc
      181 gaagtgtcaa cccaagtgag caatatgagc agcgcagcgg cctttcaaca gtggcaacag
      241 gctgtagagc aagtcagagg taatcgagat gaatccctgc tcgggagcgt tgcccaaacc
      301 cctcccgaac tcaaacatta tgatgagcgg tattggtttc tggccgcgca gatcgccgag
      361 gtcgccagat acaatctccc gatttgccgg gactacttcg acctagcgcg aatgcttgag
      421 cgccgcgaga tggtgccggt tccgggcgtg accgagacct acgtcttgta tggcgtggcg
      481 cagcgggttg acgacagcga gttcaccagc gaaccaggtg tgacacccga ctatggacca
      541 attcaggcgc tggcgaagaa cttcgcgggc cgttcgtacg acttcaacgt cccggccgac
      601 cgcgcagcgc tgaagagcaa catgctcagc tctttgcgtc cggcggcgtt gaagatcctg
      661 gaggaagtgg cagcggcgta tcacaagcag tttaatcggc cgttgccggt gagctcgctg
      721 gtgaggccgg aacagtatca gcgcgcactg gctcgagtga accgcaacgc tgtaaagatc
      781 gacacgccgc cgcattcgac gggtctggct tttgacattg actatcgtta catgaccggc
      841 gcggagcaga gctttgtgat gactgagttg gcgcggctga agaatgccgg acgtatcgag
      901 gcgatacgcg aacgcaatgc gaactatcac gtgtttgcct tcatcaacgg cacgcggccg
      961 aatgacgcgc tgatcgagtc gaagctggaa gaggcgatgc cgcccggagt ggcagcaaac
     1021 aaaacagtcg agaagactaa gccgaagccg aaaaaggcga cgcgtcctaa acgcaaacgg
     1081 cgtcgttaat ttgacctgtg gtcgaaccgg ctgtgatctt tgtgcatcac atcgtttccc
     1141 ccggctaaac ctcacgtaaa atagcggcac aggaaaatat atgaagaatg gcaaggttca
     1201 tattgcgctg atcgtggttg tgctcgcagc cgtgattggg gttgtttcgt tctcaggtcg
     1261 tagcagcaat cttggacagg cggcgcagtc gaaaaatgaa tcgagagtta agtccacttc
     1321 gcgcgtcgcg gatcggccca gcaccgccac cactgcaaag gcttcgactg tggctttcgc
     1381 cgccgctgct tcgcgaaacg cagcgctgag aaatgaagtc acgtggacct tcggcggcaa
     1441 acaacagcgc ggctggtcgc tttacgaact cttgattagc aagacactca aaacgccgga
     1501 agatgcaggc acgagcgact tcg
//
LOCUS       DASWTX010000749         3134 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_295471, whole genome shotgun sequence.
ACCESSION   DASWTX010000749 DASWTX010000000
VERSION     DASWTX010000749.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3134)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3134)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3134
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295471"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2604)
                     /locus_tag="VGD38_11385"
     CDS             complement(<1..2604)
                     /locus_tag="VGD38_11385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728665.1"
                     /translation="MIGFAPQSAVKVEGCVSCHGMIEPMHKYGPTETLEKIKDGKDAV
                     GLSCTACHGGNPATKLKEEAHVKPKFPDEWRRAGNYSGANPERSNTLLNRESWEFVRF
                     VNPGDLRVAAKTCGNAGCHEIESKNVARSMMTHGAMLWGAALYNNGSFHLKDPRFGES
                     YTEAGRPQTLLQEGRDLTDEERRAKGLLTFLEPIPRWEISQPGNVLRVFERGGRRRLE
                     VGLPDKEEEPGKPDKGLSPRGFGTANRTDPVFLGLQKTRLLDPTLNHLGTNDHPGDYR
                     SSGCSACHVIYANDRDPAHSAFYQTAGTLGRSQTADTTIPKNESGHPIKHQFTSQIPS
                     SQCMVCHMHPGTNMVASYMGLTWWDNESDGAKLYPAKQHDPSQDEEQEKLNRNPEGAS
                     LRGLWSNFEFLKDTGSPEFNALLRNTQFADSHGHGWLFRKVFKRDRKGNLLDADGNIV
                     SPDDPAKFSKAVHLTDIHLERGMHCVDCHFRQDSHGDGNLYNEPRAAIEIACEDCHGT
                     IKQKATLFTSGPAAAPVTGTIAERRKSQNQPLIGQDLTRIRTRDAEGTRIPLFQRVPR
                     DRKRKDEKGVDIDLKAGDVVQNSLVVPGRWWRVPQTLDTVTPNARDYNEKSSYAKTIR
                     KDNVKWGDVPANSNDLAHRDDDMTCVSCHSSWMTSCFGCHLSMQANRKMPNRHNEGGN
                     TRNYTQYNFQVLRDDIFMLGRDGTVTGNRVAPVRSSSAVLVSSQNQNREWIYSQQQTT
                     SAEGFAGQAFNTHVPHTVRSKETKGCSDCHVSEKNDNNAWLAQLLLQGTNFVNFMGRY
                     VYIAADHALEVVAATEPTEPQAVIGSTLQKIAYPSNYDRFVRGGRQLKTFYEHVGNPK
                     VLQVQLRGEYAY"
     gene            complement(2641..>3134)
                     /locus_tag="VGD38_11390"
     CDS             complement(2641..>3134)
                     /locus_tag="VGD38_11390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728666.1"
                     /translation="FSFWVRNGIRLTQTGVGLVQPNSLLPSLRSSKIQGQANFVNPGI
                     FLYNGGLDVELTQRIKAVMNVNYLRFHRTEPLELVLFQNRIRHDIGFDYSLGVAYRPF
                     LINNFTLTFGASALQTGRGFRDIFTDASRNCPPGVEDFCQPNVISPNKALYSLFAQAK
                     FVF"
BASE COUNT          652 a          994 c          803 g          685 t
ORIGIN      
        1 gtacgcatac tcaccgcgca actgcacctg caacaccttc ggattgccca cgtgttcgta
       61 aaacgtcttc aactgccgcc caccacgcac gaaccgatcg tagttcgacg gatacgcgat
      121 cttctgcaac gtgctgccaa tcaccgcctg cggctcagtg ggctccgtcg cggccacaac
      181 ctccagcgca tggtccgccg cgatatacac atagcggccc atgaagttca caaagttcgt
      241 gccctgcaac agcaactgcg cgagccacgc gttgttgtca ttcttctccg acacgtgaca
      301 atcactacaa cccttcgtct ccttcgaacg aaccgtgtgc ggcacgtgcg tgttgaaagc
      361 ctgaccggca aaaccttcag ccgaggtggt ctgttgctgt gagtaaatcc attcgcgatt
      421 ctgattctgc gagctaacca gcacagccga cgacgaacgc accggcgcga cgcgattgcc
      481 cgtcacagtt ccatcgcggc ccagcatgaa gatgtcatca cgcaacacct ggaagttgta
      541 ctgcgtgtag ttgcgcgtgt tgccgccttc gttgtggcgg ttcggcatct tgcgattcgc
      601 ctgcatcgac aggtgacaac caaaacaact cgtcatccac gaagagtgac acgagacgca
      661 cgtcatgtcg tcgtcgcgat gggccaggtc gtttgaattc gccggcacat cgccccactt
      721 cacgttgtcc ttgcgaatcg tctttgcgta gctcgacttc tcgttgtagt cgcgcgcgtt
      781 cggcgtgacc gtgtcgagcg tctgtggcac gcgccaccag cgaccgggca cgacgagcga
      841 gttctgcacg acgtcgccgg ctttgagatc aatatcgacg cctttttcat ccttgcgttt
      901 tcgatcgcgc ggcacacgct gaaacagcgg aatcctcgtc ccttccgcgt cgcgcgtgcg
      961 aatgcgcgtg aggtcctgac caatcaacgg ttggttctgc gacttacgtc gttccgctat
     1021 cgtacctgtc actggggccg ccgccggacc cgacgtgaac agcgtcgcct tctgtttgat
     1081 cgtgccgtgg caatcttcgc acgcgatctc gatcgccgcg cgcggctcgt tgtagagatt
     1141 accgtcgccg tgcgaatcct gacggaagtg acaatcaacg cagtgcatgc cgcgttcgag
     1201 atgaatgtcc gtgagatgca cggccttact gaacttcgcc ggatcgtcag gcgagacgat
     1261 gttgccgtcg gcgtccaaca ggttgccttt gcgatcgcgt ttgaacactt tgcgaaacag
     1321 ccagccgtgc ccgtgcgaat cggcaaactg cgtgttacgc aacagcgcgt tgaactccgg
     1381 cgagccggtg tctttcagga attcaaagtt ggaccataag ccacgcaagc tcgcgccttc
     1441 gggattgcga ttgagcttct cctgttcctc atcctgactc ggatcgtgtt gcttcgccgg
     1501 atacagcttc gcgccgtcgc tctcattgtc ccaccacgtg aggcccatgt agctcgcgac
     1561 catgttcgtg cccgggtgca tgtgacagac catgcactgc gacgacggaa tctggctcgt
     1621 gaactggtgc ttgatcggat ggcctgattc gttcttggga atggtcgtgt cggccgtttg
     1681 cgaacgcccg agagtgcccg cggtctggta gaaagcggag tgcgccggat cgcgatcgtt
     1741 tgcatagatc acgtgacacg ctgaacaacc tgacgacctg tagtcacccg gatgatcgtt
     1801 cgtgccgagg tggttgagcg tcggatccag caagcgcgtc ttctgcaaac caagaaacac
     1861 gggatcagtt cggttcgccg tcccaaatcc acgcgggctc aatcccttat caggcttgcc
     1921 aggctcttct tctttatccg gcaacccgac ttccaggcgg cgccgtccac cgcgttcgaa
     1981 cacacgcaac acgttacccg gctgcgagat ctcccaacga ggtatcggct ccaaaaaggt
     2041 caacaatcct ttggcgcgcc gctcctcatc cgtcaaatcc cttccctctt ggagtaacgt
     2101 ttgcggccgt ccggcttcag tatagctctc gccaaaccgc ggatctttca gatgaaaact
     2161 gccgttgtta taaagcgccg cgccccacaa catcgcgccg tgcgtcatca tgctgcgcgc
     2221 cacattcttc gactcgatct cgtgacaccc cgcgttaccg cacgtcttcg ccgccacacg
     2281 cagatcgccc ggattaacaa acctcacaaa ctcccaactc tcacgattca acaacgtatt
     2341 cgaccgctcc ggattcgcgc cgctgtaatt ccccgcgcgg cgccactcat ccggaaactt
     2401 cggcttcaca tgcgcttcct ctttcaactt cgtcgccgga ttcccgccat gacacgccgt
     2461 acaactcaac cccaccgcat ccttaccatc cttaatcttc tcgagcgtct cagtgggccc
     2521 atacttgtgc atcggctcta tcatcccgtg acacgacaca cacccctcga cctttaccgc
     2581 agactgcggt gcaaaaccga tcatgataat caaataaaaa acgatctgtg tcatctgtgg
     2641 ttaaaacacg aacttcgctt gcgcgaataa cgaatacaaa gctttgttcg gactgataac
     2701 gttgggctga cagaagtctt caacgccggg cggacagttg cgcgacgcgt cggtgaatat
     2761 gtctcggaag ccgcgccctg tctgtaacgc cgacgcgcca aacgtcagcg tgaagttgtt
     2821 aatgagaaac ggccgataag caacgccgag actgtaatcg aaaccgatat cgtgccggat
     2881 gcgattctga aacaggacca actccagcgg ctcggtgcga tgaaagcgca ggtagttcac
     2941 attcatcacc gccttgatgc gctgcgtcag ttcaacatcg agcccgccgt tgtaaagaaa
     3001 gatcccggga ttgacgaagt ttgcctgacc ctgaatcttg ctgctgcgca aactcggcaa
     3061 cagactgttc ggttggacca gcccaacgcc cgtctgcgtc aaacgaattc cattgcgtac
     3121 ccaaaacgaa aact
//
LOCUS       DASWTX010000750         3293 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_339585, whole genome shotgun sequence.
ACCESSION   DASWTX010000750 DASWTX010000000
VERSION     DASWTX010000750.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3293
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339585"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>3293
                     /locus_tag="VGD38_11395"
     CDS             <1..>3293
                     /locus_tag="VGD38_11395"
                     /inference="COORDINATES: protein motif:HMM:NF019323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-2-macroglobulin family protein"
                     /protein_id="HEY0728667.1"
                     /translation="GDDEEDSGYYGADLVTEGDATLNARGDAYVDFEVPAPDPKEEWD
                     YSYRLEAQVTDASRREMQGAASFIGTRGKTVADAYPERYLYYQGDAATIRVKTADYAG
                     KPVSEKVTLKFIEQTWEKQSKWEENNGYKYEIVDYILHERELATGEVNTDSEGNATYN
                     FTVPSPGSIYVKAIITENGKEIVNRGGSFWAPDKMGQWSDFSYQDYDEKSIKLVPDKK
                     SYRPGETAQVLVMLPVDQAHLLVTTELSEILTARQINATGRSIVIDVPIDKKYAPNVY
                     LDVSFVKNSDMYNQSQIIGVPARDKMLKLDIVPNKNEFKPRDVASYTIVARNDDGSPA
                     ANTEISLGIVDEAIYSISPETAGNIKRDFYGRRYNEVQTNLAIHCTFTGYGGEKPADL
                     AKNKPAYQLADFKNDSAYAETTIRKEFKDTAFWQPEVVTGGDGKATVSFKLPDNLTTW
                     RATARGVTADTRVGSAVQKTIARKDVIMRLEMPRFLTEGDTVTISGVVHNFLKSDKST
                     KISLELNGAQLLDAPASTVTIRPNGEHRVDWRVQANTVGKLTLLAKALTDTESDAVEM
                     TMDILPHGLKQTAGKTTTITQNDADQTINLDVPGRANTQARALRIEVSPSIAGALFGA
                     LDYLTSFPYACTEQTMSSFVPNLVVAQTLKDVPTAKIRASNDLDAKVRKGLDRLYANQ
                     HGDGGWGWWKDDRSDPFMTAYVVDGLTMASRAGYPVDDWRREQGRQKLLSLLNAGKND
                     NGNPIDDETRAYMIYAFTESGDSDTRFIDELYGKRNNLGAYGRALLALALHERNDGRA
                     QEVANLIESSALQDEFGVHWQTVRVNDYGRDVYLDAEATSLSLKALSRIKPDSNLLSR
                     TARWLVHNRTNGYYWRSTKETAFAIYGLSDYLKVSTELSPDYTFEVYLNGTKVAGQHV
                     GADEATNAEAITVWKKGTEIGPSNQIRIVKRGKGALYVSAALEYFTADENVAAQSAGG
                     LKITREYLRLHVTEDQNGKASWKIDPLSGELRSGDMIVVRLRLTGPRAQYLMIEDPIP
                     AGAEQVARVSGIYLNHSLGQWTDWYSNREFRDNRTAIFMNYFDGEAMLQYAMRVEVPG
                     DFKIAPARG"
BASE COUNT          794 a          943 c          984 g          572 t
ORIGIN      
        1 aggtgacgac gaggaggatt ccggctacta cggcgccgat ctggtaaccg agggcgatgc
       61 tacgttgaat gccagaggcg atgcgtatgt cgacttcgaa gtgcctgcgc ctgatccaaa
      121 agaagaatgg gactattcat accggttgga agcgcaggtc accgacgcct cacgccgaga
      181 gatgcagggc gccgcttcat tcatcggcac gcgcggcaag actgtcgccg acgcctatcc
      241 ggaacgctat ctttattacc agggcgacgc cgctacgatt cgcgtgaaga ccgcggatta
      301 cgcgggtaaa cctgtctccg aaaaagtcac gctgaagttc atcgaacaaa cgtgggagaa
      361 gcaaagcaag tgggaagaga acaacggcta caagtatgag atcgtcgatt acatccttca
      421 cgaacgcgag ttagcgactg gcgaagtgaa caccgatagc gagggcaacg caacttacaa
      481 cttcacagtg ccttcgcccg gcagcatcta cgtcaaagca atcatcaccg agaacggcaa
      541 agagatcgtc aatcgcggcg ggtcgttttg ggcgcccgac aagatgggcc agtggtcgga
      601 tttttcatat caggattacg acgagaaatc gatcaagctt gtccccgata agaagtcata
      661 caggccgggc gaaaccgcgc aggtgctggt aatgctgccg gtggaccagg cgcacttgct
      721 cgtgactacg gagttgtcgg aaatcctcac ggcgcgccag atcaacgcca ccggccgcag
      781 catcgtgatc gatgttccga tcgacaagaa gtacgcgcca aacgtctacc tcgacgtgtc
      841 gttcgtgaag aacagcgaca tgtacaacca gagccagatc atcggcgtgc ccgcgcgcga
      901 caagatgctg aagctcgaca tcgttccgaa caagaacgag tttaagccac gcgacgtcgc
      961 gtcctacacg atcgtcgcgc gcaacgacga cggctcacct gccgcgaaca ctgagatcag
     1021 tctcggaatt gtagacgaag cgatttacag catctcgccc gaaacggccg gcaacatcaa
     1081 gcgcgacttc tatggccggc gctacaacga agtgcagacg aatcttgcga ttcattgcac
     1141 gttcaccggt tacggcggtg aaaagcccgc ggacctggcg aagaacaagc ccgcttatca
     1201 gcttgccgat ttcaagaacg acagtgccta cgccgagacc acgattcgta aagaattcaa
     1261 agacactgca ttctggcaac ccgaggtagt aacgggcggc gatggcaaag caaccgtgag
     1321 ctttaagctg ccagacaacc tcacaacgtg gcgcgcgacg gcgcgcggtg tgacggccga
     1381 cacgcgcgtt ggttcagctg tacagaaaac catagcacgc aaagacgtga tcatgcgttt
     1441 ggagatgccg cgcttcttga cggaaggcga cacggtcacg atctcgggcg tcgttcacaa
     1501 cttcctgaag agcgacaagt ccacgaagat ctcgctcgag ttgaacggcg cgcagttact
     1561 cgatgcgcct gcctcaaccg tcacgattcg cccgaacggc gagcatcgtg ttgactggcg
     1621 cgtacaggcg aacacggtcg gcaaactgac gttgctcgcg aaagcgctca ccgacaccga
     1681 gtccgacgca gtcgagatga cgatggacat cctgccgcat ggcctgaaac aaacggcagg
     1741 caagacgacg acgatcacgc agaacgacgc ggaccaaaca atcaatctcg acgtgccggg
     1801 acgcgcgaac acgcaggcgc gcgcgctgcg gatcgaagtg tcgccgtcca tcgccggcgc
     1861 attgttcggc gcgcttgatt acctcacgag ttttccttac gcgtgcaccg aacaaacgat
     1921 gtcgagcttc gtgccgaacc tcgtcgtggc ccagacgttg aaagacgttc cgaccgcgaa
     1981 gatccgcgcg tcgaacgatc tcgatgcgaa agtccgaaaa ggtctggacc ggttgtatgc
     2041 gaatcagcat ggcgacggcg gttggggctg gtggaaagac gaccgcagcg atccgttcat
     2101 gacggcctac gtcgtcgatg gtctgacgat ggcgagccgt gccggttatc ccgtcgacga
     2161 ctggcggcgc gaacaggggc ggcaaaaact gttgtcgttg ctcaacgcgg gcaagaacga
     2221 caacggcaat ccgatcgacg acgaaacgcg tgcttacatg atttacgcgt tcaccgaaag
     2281 cggcgatagc gacactcgct ttattgacga gttgtacggc aagcgcaaca acctcggtgc
     2341 ttacgggcgc gcgttgctgg cgctggcttt gcacgaacgc aatgacgggc gcgcgcagga
     2401 agtcgcgaac ctgatcgaaa gctcggcctt acaggacgag ttcggagtgc actggcaaac
     2461 cgtgcgggtc aacgactacg gccgcgatgt ttatctcgac gcggaagcga cgtcgctttc
     2521 gctgaaggcg ctgtcgcgga tcaaacccga ttcaaacctg ctgtccagga ccgcgcgctg
     2581 gctggtccat aaccgaacca acggctacta ctggcgatca accaaggaaa ctgcgttcgc
     2641 catctacggg ctcagcgatt atttgaaagt cagcacggag ctgtcgcccg actacacgtt
     2701 cgaggtttat ttgaacggga ccaaggttgc gggacaacac gtcggggccg atgaggccac
     2761 gaacgcagag gccatcacgg tttggaagaa aggcaccgag attggtccat caaaccagat
     2821 ccggatcgtg aaacgcggca aaggcgcttt gtacgtttcg gccgcgcttg aatacttcac
     2881 cgccgatgaa aacgtggcgg cacaatcggc aggcggattg aagatcacgc gtgagtacct
     2941 gcggctgcac gtgactgaag accagaacgg caaggcgagc tggaagatcg atccactgag
     3001 cggcgagctg cgttcaggcg acatgattgt cgtcaggctg cggctcaccg gcccacgcgc
     3061 gcagtatctg atgatcgaag atccgattcc cgcgggcgcg gagcaagtcg cgcgcgtgag
     3121 cgggatttat ctcaatcact cgcttggcca atggaccgac tggtacagca accgcgagtt
     3181 ccgcgacaac cgcaccgcga tcttcatgaa ttacttcgac ggcgaggcga tgctgcagta
     3241 cgcgatgcgc gtcgaggtgc cgggtgactt caagatcgca cccgcgcgcg gcg
//
LOCUS       DASWTX010000751         2101 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_295507, whole genome shotgun sequence.
ACCESSION   DASWTX010000751 DASWTX010000000
VERSION     DASWTX010000751.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295507"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1310
                     /locus_tag="VGD38_11400"
     CDS             <1..1310
                     /locus_tag="VGD38_11400"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEY0728668.1"
                     /translation="LRGLDALRGMAAMAIVLYHATDQSQAALPNNLLYYPARLVQLAS
                     SQAYISVFLFFVISGFCIHLQWARARAAGEEPNIKFGAFWKRRIRRLYPPYVIALALY
                     LLLTAWTIGIDVTRFFVYDLGIHLLMLHNLDSHTAYSINGVFWTLAIEEQLYLAYFLL
                     LFLRARWGWTVTLAVCLLARAGWMVFSHVVWLKTGFGLPVPESAAAHWFTWALGAIAV
                     EAMFGLVKLPNWARDLRVATVLIIPASVISAYLPVISKDTPLHDVSWFLIHPLWGLGF
                     FVVVNRIVVSEQSWIRQVRLPSLISIIATLGIFSYSIYLTHELMIMQSWRWINTSHLQ
                     LVNVFLVVLPATVVFAFVFFWFCEKPFMVRRNSSVHTSVKEGFPSRAFLTTLRARFNA
                     RLHRVSGTAEPDTEPATATGAVGPTPRLANTYADSIAVADGQN"
     gene            1285..>2101
                     /locus_tag="VGD38_11405"
     CDS             1285..>2101
                     /locus_tag="VGD38_11405"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HEY0728669.1"
                     /translation="MPSPTVRIDAYRAPAGRIIGAALTNNTAYTRLGHLTDRIGHRLS
                     GSANLERAIAWAIAEMKKDGLDNVRAEKVMVPHWVRGQESLEMLAPLPTKLSLLGLGN
                     SVATPAAGITADAVVVRNFAELDALGEKVRGKIVVYNAPFTNYGATVQYRLNGASRAA
                     RYGAVAALVRSITPTSLQTPHTGAMNYDPQQPKIPVAAITIEGAELLQRTYDRGDQIS
                     LRLKMEAKFLPDAESANVVAELKGTERPDEIVLIGGHYDSWEVGQGAHDDGGSC"
BASE COUNT          374 a          579 c          641 g          507 t
ORIGIN      
        1 gcctgcgcgg tctcgacgcg ttgcgcggga tggctgctat ggccatcgtg ctctatcacg
       61 cgacggatca gagccaggcg gccctgccga ataacctgct ctactatccg gcgcggttgg
      121 tccagctcgc gagctcgcaa gcgtacatca gtgtatttct gttctttgta atttccggtt
      181 tctgtattca cctgcagtgg gcgcgtgctc gtgcggcagg tgaagagccg aacatcaaat
      241 tcggcgcgtt ctggaaacgg cgcatccggc ggctgtatcc gccgtacgtc atcgcgctcg
      301 cgctttacct gttgctcact gcatggacca tcggtatcga cgtaacgcgc ttcttcgttt
      361 acgacctcgg cattcacttg ctgatgcttc acaacctcga ctcgcacacg gcttactcga
      421 tcaacggcgt cttctggaca ctcgcgatcg aggagcaact ctatctcgct tactttttgt
      481 tgctgttctt gcgcgcgcgc tggggttgga ccgtgacatt ggctgtgtgt ttgctggcgc
      541 gtgcgggttg gatggtgttt agtcacgtcg tctggctcaa gacaggattc gggctgccgg
      601 tgccggagtc ggcggcggcg cactggttca cgtgggcgct cggcgcaatc gctgtcgagg
      661 cgatgtttgg tttggtgaaa cttccgaact gggcgcgcga tctgcgcgtg gcgacagtgc
      721 taatcattcc ggcgtcggta atctctgcgt acctgccggt gatttcgaaa gacacgccgc
      781 ttcacgacgt gagctggttc ctgattcatc cgttgtgggg attgggattc ttcgtcgtcg
      841 tcaaccgcat cgtggtgtcg gaacaaagtt ggatacgcca ggtcaggttg ccgtcgttga
      901 tctcgatcat tgcgacgctt ggcatctttt cgtattcgat ttacctgaca cacgagttga
      961 tgatcatgca gtcgtggcgc tggattaata cgtcgcactt gcaactcgtc aatgtgtttc
     1021 tcgtcgtcct tccggcaaca gttgtctttg catttgtctt tttctggttt tgtgagaagc
     1081 cgttcatggt gcggcgtaac agttctgtcc atacatccgt taaggagggt tttccatcac
     1141 gtgcgtttct taccactctt cgcgctcgtt tcaacgctcg cttacaccgc gtctcaggta
     1201 ccgcagaacc cgacaccgaa ccagcaacag caacaggcgc cgttggccca accccccgcc
     1261 tcgccaacac ctacgccgat agtattgccg tcgccgacgg tcagaattga cgcttaccgc
     1321 gctcctgcgg gacgcatcat cggcgccgcg ctgactaaca acacggctta tacaagactc
     1381 ggtcatttaa ccgatcgcat cggtcatcgt ctcagcggtt ccgcgaatct ggaacgcgcg
     1441 atcgcgtggg ccatcgcgga gatgaagaaa gacggcttgg ataacgtgcg cgccgagaag
     1501 gtgatggtgc cgcattgggt tcgcggccag gagagtctcg agatgctcgc gcctctgccg
     1561 acgaagttgt cgctgctcgg gctcgggaac agtgtcgcga cgccggcggc aggcattact
     1621 gccgacgctg tcgtggtgcg caactttgcc gagctggatg cgcttggtga aaaagtgcgc
     1681 gggaagatag tggtgtacaa cgcgccgttt acaaattacg gcgcgaccgt gcagtaccgt
     1741 ttgaatggcg cttcacgcgc agcacgctat ggcgcggttg cggcgctggt gcgttcgatc
     1801 acgcccacca gcctgcagac gccgcacacg ggcgcgatga attacgatcc gcagcaaccg
     1861 aagattccgg ttgcggcgat cacgatcgaa ggcgcggagt tgttgcagcg cacttacgat
     1921 cgtggcgatc agatttcttt gcgactgaaa atggaagcga agtttttgcc ggatgctgag
     1981 tcggcgaatg tggttgcgga gttgaaaggg actgagcggc cggatgagat cgttttgatc
     2041 ggcggtcact acgactcgtg ggaagtgggc cagggcgcgc atgatgatgg cggaagttgt
     2101 a
//
LOCUS       DASWTX010000752         2866 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_163659, whole genome shotgun sequence.
ACCESSION   DASWTX010000752 DASWTX010000000
VERSION     DASWTX010000752.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2866)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2866)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2866
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163659"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1084
                     /locus_tag="VGD38_11410"
     CDS             <1..1084
                     /locus_tag="VGD38_11410"
                     /inference="COORDINATES: protein motif:HMM:NF044477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEY0728670.1"
                     /translation="VGLTERYLSSDPPKPKQLSSLKAEVHAAFERPHRELRQAQWQQA
                     SGTSGTILSIGTALRQIASPNGKNQSVQPTETDIPLSQLTALNAKLATMNLAERRALA
                     GLTSQRSEIIVAGGHILEAAMRALGINVIRTCEWALREGVIIDSVRELEDESRPPAPN
                     FADQKLRGVHAVGRRFGYEETHARQVAKLAEKIFDSLAPTENLSRHHRTLMLAGALLH
                     DIGYHIAHESHQKHALYLITNSELTGFSEAERAVIANIARYHRGSLPKKRHPEYAALN
                     LPDREIVCKLGGIVRLADALDRSHDSRIYDVQCREKSGALHFDLHSDADCANELLEVE
                     RKRELFEQAFNRTLSFSVRRQKAVRA"
     gene            1094..2194
                     /locus_tag="VGD38_11415"
     CDS             1094..2194
                     /locus_tag="VGD38_11415"
                     /inference="COORDINATES: protein motif:HMM:NF017085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAD domain-containing protein"
                     /protein_id="HEY0728671.1"
                     /translation="MAKAKKIRELDCNAPAIQGIRLVFLTRFEELLEWRKAALDWSDP
                     EGVHSMRVASRRLRSTMRDFQPYVPKRSFTSVAKQLKGLAAALGEVRDQDVGIAALEE
                     IQKKAPAAHADALNRFIENRKQLREQQRKKLKAALAKSELKKLETDFVAAVEEASAAV
                     GRKSKRTALPSFVDVSRDIIRDRLKEFEKRSDGLFRPLDVEALHDLRITTKRLRYAIE
                     LVAPCFDRSIMTHAKRAALLQTTLGDLHDCDSWILTLGKEIVPARKENATEQVAAFVW
                     LMNHFSRLRTKHLHHAFNRWCEWETHDASGRLRAAITEEKPAEQEPEVQAVAEPEDQT
                     AESQVPEQPSEPQDQLIEPQDQVAGEQMRQAL"
     gene            complement(2158..>2866)
                     /locus_tag="VGD38_11420"
     CDS             complement(2158..>2866)
                     /locus_tag="VGD38_11420"
                     /inference="COORDINATES: protein motif:HMM:NF014821.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Ada metal-binding domain-containing protein"
                     /protein_id="HEY0728672.1"
                     /translation="SRLPAWMTAPQDLEAEIKTREVAREHAPVETRTARWSPWDERSK
                     ERPMPSTPASASVQSVFSTGAGGPVPAPRDPNQIAQNTVFYAWEFFRQYFFWWYWGAY
                     VLFQFSGLGFTLGFLVATITMSLWALFTGVYKANELVRNARLKQATLTAPLPPVPPTP
                     RRNPLSWQTVTHVYPLPAPQKPPQAIVGNRVLGIYHLQDCNWVEQISAANTVTFASPS
                     EAASHGYKACRICSPAT"
BASE COUNT          665 a          810 c          852 g          539 t
ORIGIN      
        1 agttggtcta acagagcgtt atctcagttc ggatccacca aaaccaaaac agctttccag
       61 tctcaaagcc gaggtccacg ccgcgttcga acgtccgcac cgcgagttgc ggcaagcgca
      121 atggcaacaa gcatcgggca cttcaggcac gatactctcg atcggcaccg cgcttcgcca
      181 gattgcatcg ccgaacggca agaaccagtc agtgcagccg acggaaaccg acatcccact
      241 gagccagctc accgccttga acgcgaaact cgcgacgatg aatcttgcgg aacgccgcgc
      301 gctggcagga ctgacttcac agcgatccga aatcatcgtc gccggtggtc acatactcga
      361 agccgcgatg cgcgcgttgg gcatcaacgt gatccggacg tgtgagtggg ccttgagaga
      421 aggcgtgatc atcgacagcg tgcgtgagct cgaagacgag tcgcgacctc cggcgccgaa
      481 ttttgcggat caaaaactgc gcggcgtgca cgcggtcgga cgccgtttcg gttacgaaga
      541 aacacacgcg cgccaagtcg ccaaactcgc ggaaaagata ttcgacagtc ttgcgccaac
      601 tgagaacctg tcgcggcatc atcgtacgct tatgcttgcc ggcgcgctgt tgcacgacat
      661 cggttatcac atcgcacacg agtcgcacca aaaacacgcg ctctatctga ttacaaattc
      721 cgagctcacg ggtttttccg aagccgagcg cgccgtgatc gcgaacatcg cgcgttatca
      781 tcgcggctcg ctgccgaaga agcgccaccc cgaatacgcg gcgctgaatc tgccggaccg
      841 ggagatcgtt tgcaagctgg gtggcattgt aagattggct gacgcgttgg accgtagtca
      901 cgatagtcgc atctacgacg ttcagtgccg cgagaagtcg ggcgcgttgc atttcgacct
      961 gcacagcgac gccgattgcg ccaacgaatt gctggaagtt gagagaaagc gggaactgtt
     1021 tgaacaggca ttcaatcgaa ctctgagttt tagtgtgcgg cggcaaaagg ccgttcgcgc
     1081 ctgattagaa cttatggcca aagcgaagaa aatacgcgaa cttgattgca acgcgccggc
     1141 tattcaaggc atacggttgg tgttcctgac gcgattcgaa gagctgctcg agtggcgcaa
     1201 agcggcgctc gactggtccg atcccgaagg cgttcactcg atgcgcgttg cttcgcggcg
     1261 tttgcgcagc acgatgcgtg attttcagcc gtacgttccg aaacgaagtt ttacgtccgt
     1321 ggcgaaacag ttgaagggtc ttgcggcagc gctcggcgaa gtgcgagatc aggacgtcgg
     1381 catcgcggcg ctcgaagaga ttcagaagaa agcacccgcc gcacatgctg atgcgctcaa
     1441 ccgattcatc gagaatcgaa aacagctccg cgagcagcag cgaaagaaac tgaaagcggc
     1501 gcttgcgaag agtgaactaa agaaactgga aaccgatttt gtcgctgccg ttgaagaagc
     1561 gagtgccgcg gttggacgaa agagcaagcg aacagcgctg ccgtcgtttg tagatgtttc
     1621 ccgagacatc attcgcgatc gtcttaaaga gtttgagaaa cgcagtgatg gattgttcag
     1681 accgctcgac gttgaagcgc tgcacgatct gcgcattacg acgaaacgtc tgcgttacgc
     1741 gatcgaactg gtcgcgccgt gcttcgatcg ctcgattatg acgcacgcga aacgagcggc
     1801 gctcttacaa acgactctcg gcgatcttca cgattgcgat agttggatcc tgacgctcgg
     1861 caaggagatc gttccggcga gaaaagaaaa cgcgacagaa caagtggcgg cgtttgtgtg
     1921 gttgatgaat cacttctcga ggctgcgcac gaaacacttg caccacgcgt tcaatcgctg
     1981 gtgtgaatgg gaaacacacg atgcgagtgg gcggttgcga gcagcgataa ctgaagaaaa
     2041 accggcagag caggaaccgg aagttcaagc ggttgcggag ccggaggatc aaaccgcgga
     2101 gtcacaggtg ccggaacaac ccagcgaacc acaggatcag ctcatcgagc cgcaggatca
     2161 agtcgcgggc gaacagatgc gacaggcttt gtaaccgtgt gacgccgctt ccgacggtga
     2221 agcaaacgtg accgtgttcg ccgccgagat ctgttccacc caattgcaat cctgcaagtg
     2281 ataaatcccc aacacgcggt tgccgacgat cgcttgcggc ggtttctgcg gcgccggtag
     2341 cggatacacg tgcgtgaccg tttgccacga gagcgggttg cgtcgcggcg tgggtggcac
     2401 aggcggaagc ggagcggtta gcgttgcttg tttcagccgc gcgttgcgca cgagttcgtt
     2461 ggctttgtac acgcccgtga agagggccca aagcgacatc gtgatcgtcg cgactaaaaa
     2521 cccgagcgtg aaacccaggc cgctaaactg aaacagcacg taggcgcccc agtaccacca
     2581 gaagaaatac tgccggaaaa actcccacgc ataaaagaca gtgttctgcg cgatctggtt
     2641 tggatcgcgc ggcgccggca ctgggccacc ggcccccgtg ctgaagaccg actggaccga
     2701 cgctgacgcc ggtgtgctcg gcatcggacg ttccttgctt ctctcatccc acggcgacca
     2761 gcgcgcggtt ctcgtttcca cgggagcatg ttcgcgcgcg acttctctcg tctttatctc
     2821 tgcttccaga tcctgcggag ccgtcatcca cgcgggcaat cgcgac
//
LOCUS       DASWTX010000753         1964 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_226167, whole genome shotgun sequence.
ACCESSION   DASWTX010000753 DASWTX010000000
VERSION     DASWTX010000753.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1964
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_226167"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..793
                     /locus_tag="VGD38_11425"
     CDS             <1..793
                     /locus_tag="VGD38_11425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728673.1"
                     /translation="YHAGTLSIRERLGRSLTMDFNYTLSHSMDDASGLQTSAAFGGAF
                     ILNPLRQEDSFANSDFDVRHIINANAVWELPFGRGRKFFSGVNKLANAFLGGWQMSGI
                     FRWNSGLPMFSPYDDARWATNWNAQSSGVRIRPVESCPTQGGKLFGNCLLEAYRSWRG
                     AFAGETGDRNVLRLPGYVNLDMGLSKSFDMPWSETQKLQIRFEVFNVSNTQRMFGMDT
                     SRSGFGLQLDPDQITSVDDIPTNWSNFTSIQGQPRVMQIGARFTF"
     gene            910..1911
                     /locus_tag="VGD38_11430"
     CDS             910..1911
                     /locus_tag="VGD38_11430"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728674.1"
                     /translation="MRRVVFPVFAILALSACVYAQAPDRKAQLGIGGGSYILFGDLTV
                     NEGSEKRAAPLVYEVLLNNPGGRPADRQYVSSGGRYQFINLAPGQYELVVLLDHQEIG
                     RMRVEILSGGAERVQQNLELAWKGNASAKPGSVSVADFYKRLDANEKLFVTAREATDQ
                     KRYDDAITTLRQLVAADPNDFQAWAELGTVYLFKQNLDESENAYVKSVTARPQFFLGQ
                     MNLGRVRVARKNYEGAIEPLTKAVELQPSSADANYYLGESYLQIKKGSKAVGYLNEAI
                     KLDPVNKADLHLRLAALYNAAGHKNLAAIEYEEFLKKKPNYPDRKKLEDYIAANKKP"
BASE COUNT          427 a          541 c          559 g          437 t
ORIGIN      
        1 ctatcacgcc ggtacgctca gcattcgcga gcgcctcggt cgtagcttga cgatggactt
       61 caactacacg ctctcacatt cgatggacga tgcttccggg ctccagacca gcgccgcgtt
      121 cggtggggcg tttattctga atccattacg tcaggaagac tccttcgcca attccgactt
      181 cgacgtgcgg catatcatca atgccaacgc cgtttgggaa ttgccgtttg gccgtggccg
      241 caagttcttc tccggcgtca acaagctggc caatgctttt ctcggtggct ggcaaatgag
      301 cggcatcttc cgttggaact ccggcttgcc gatgttcagt ccatacgacg atgcgcgttg
      361 ggccaccaac tggaacgcgc agagcagcgg cgtccgtatc cgtccggttg agtcttgtcc
      421 cacacagggc ggcaagctct ttggcaactg cctgctcgaa gcgtatagaa gctggcgtgg
      481 tgcgttcgct ggtgaaaccg gcgatcgcaa cgtactgcgc ctgcctggtt acgtgaatct
      541 cgacatgggc ttgagcaagt cgtttgatat gccctggagc gaaacacaga agcttcagat
      601 tcgcttcgag gtattcaacg tcagcaacac gcagcgtatg tttggtatgg acaccagccg
      661 cagcgggttt ggtttgcagc tcgacccgga ccagatcacc tcggttgacg atattcctac
      721 caactggtcg aactttactt cgatccaggg gcaaccgcgc gtgatgcaga tcggagctcg
      781 tttcaccttc tgagcttcac cctgggggtt aacttaaatg cgggctggag cctcacgagg
      841 cttcagcccg tctttgtttc tgtgataaat agaacgctcg cgcggaaatt tagaaaggag
      901 aaccggttca tgcgtagagt tgttttccct gtgttcgcca tactcgcgtt gagcgcgtgt
      961 gtgtacgcac aagccccgga tcgaaaggcg caactcggaa ttggaggcgg gtcttatatt
     1021 ctttttggcg atctcacagt aaacgaaggc agcgagaagc gagcggcgcc gcttgtgtat
     1081 gaggtcttgc tcaacaatcc cggcggcagg ccggcggatc gccagtacgt cagttccggc
     1141 ggccgctacc agttcatcaa tctggcgccg gggcaatacg aattggtcgt tcttctggac
     1201 caccaggaga tcggtcgaat gcgcgtcgag attttgtctg gtggtgcgga acgagttcag
     1261 cagaatttag aactggcatg gaagggaaat gcctcggcca aaccaggttc agtttccgtt
     1321 gccgattttt acaaacggct cgatgcgaac gagaagttgt ttgtgaccgc gcgtgaggca
     1381 accgatcaga agcgttacga cgacgcgatt acgactctgc gccaactcgt cgccgccgat
     1441 ccaaacgact tccaggcctg ggccgagctc ggcaccgtct atctcttcaa acagaatctc
     1501 gacgagagcg aaaacgctta cgtgaagagc gtgactgcac ggccgcaatt cttccttgga
     1561 caaatgaacc tcggccgcgt gcgcgtcgcg cgcaagaact acgaaggcgc gatcgagccg
     1621 ttgacgaaag ctgtcgagct tcaaccgtcg tccgcggatg cgaattacta tctcggcgag
     1681 tcgtacttgc agatcaagaa aggctcgaaa gcagtcggtt atctcaacga agcgatcaag
     1741 ctcgatccgg taaacaaggc cgatcttcat ttgcgcttgg cggcactcta caacgccgcg
     1801 ggccacaaga atctggcggc gatcgagtat gaggagtttc tgaagaagaa gcccaactac
     1861 ccggatcgca agaagctcga agactacatc gccgctaaca agaagccttg aaaacgctgc
     1921 ttagcttact gctgttgtcg ctgatcgcag ccgcggcgct gttt
//
LOCUS       DASWTX010000754         2033 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_295517, whole genome shotgun sequence.
ACCESSION   DASWTX010000754 DASWTX010000000
VERSION     DASWTX010000754.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2033)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2033)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2033
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295517"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1049)
                     /locus_tag="VGD38_11435"
     CDS             complement(<1..1049)
                     /locus_tag="VGD38_11435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728675.1"
                     /translation="MAILTLTTGAYAQTKLLRFPDIRGDRVVFTYAGDLWTAPSSGGN
                     AIRLTSHPGVEVFGKFSPDGKWVAFTGQYDGDEQVYVVPTSGGEPRQLTFYPAHGPLP
                     PRWGWDNQVFGWSNDGKRIYFRSLRDSWTLPIARLFSVSVDGGPAEALPMPTAGSGDY
                     SPSGSEMVYSPQSRDFRSEKRYSGGQANQLYIFDLKTNSAKRITEGPRATRDAMWVGD
                     TIFFNSDRDGHFNLYAYTVSNGRTSKVTNNQPWDVRWPSSDNENQIVYELNGELQVLD
                     ARTKRSTPISINVPDEGNARRPSRVFAGNLIESVGLSPKGERAIFVARGDVFTAPIEK
                     GPTRNLTDSSNAHDK"
     gene            complement(1104..>2033)
                     /locus_tag="VGD38_11440"
     CDS             complement(1104..>2033)
                     /locus_tag="VGD38_11440"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0728676.1"
                     /translation="AVTRVEGVTNTVTAPTGGLISGPAARINLLGTAPKEMAVVPQAA
                     LVINYPRVGGGGGGGFGGPQQLQTNLSEVLEANARQLEQIRKMLRDAEAYGRARDAYA
                     KDRSLPRPDQNIVLESLVPYVRGQQPVIFRAEREVEIRGAIRFAEEMKLKPIILGGND
                     AWKVASLLKEKNVPVILTGVFSLPVREDDAYDTLYENPAKLQEAGVLFAISTGDSGPE
                     VRNLPQYAGMAAAYGLSKSDALKAVTLNPARIMNAADQLGSIEPGKMANLVVTDGDLL
                     EIRTHIRYLFIDGRPVVLSSRHTELNDAFKNRK"
BASE COUNT          432 a          648 c          548 g          405 t
ORIGIN      
        1 cacttgtcgt gcgcgttcga agagtcagtc aggtttcgcg tcggtccttt ttcgatcggc
       61 gcggtaaaca cgtcgccgcg cgcaacgaag atcgcgcgct cgcctttcgg gctcaaacca
      121 acagactcga tcagattccc cgcgaacacg cggctcggac gacgcgcatt tccctcgtca
      181 ggaacgttga tcgagatcgg cgtgctgcgc ttggtgcgcg catcaagcac ctgcaactca
      241 ccattcaact cgtaaacgat ctggttctcg ttgtctgaac tgggccaacg aacgtcccac
      301 ggctggttgt tagtgacctt cgacgttcgg ccattcgaaa cggtgtaagc gtaaagattg
      361 aaatgcccat cgcgatcgga attgaaaaag atcgtatcgc cgacccacat cgcgtcgcgc
      421 gtcgcacgtg gtccttcagt gatccgtttc gcggagttgg tcttcaggtc gaagatgtaa
      481 agctgattcg cctggccgcc gctatatcgc ttttccgatc tgaaatcgcg cgattgcggc
      541 gagtagacca tctcacttcc gctcggcgaa tagtctccgg aacccgcggt gggcatcggc
      601 aatgcttcgg ctggaccacc gtcaaccgaa actgaaaaca gccgcgcgat cggcagcgtc
      661 cacgaatcgc gcaaggaacg gaagtagatc cgcttgccat cattactcca cccaaacacc
      721 tgattgtccc aaccccagcg cggcggcaat ggaccatgcg ccggatagaa cgtgagctgg
      781 cgcggttcac cacccgacgt cggcacgacg taaacctgtt cgtcgccgtc gtattgtccg
      841 gtgaacgcga cccacttccc gtcaggcgaa aacttgccaa acacttcgac gccgggatgt
      901 gaagtcaaac gaatcgcgtt accgccgctc gaaggcgcgg tccacagatc gcccgcataa
      961 gtgaagacaa cgcgatcgcc gcgaatgtcg ggaaagcgca acaacttcgt ctgggcataa
     1021 gcgcccgtgg tcagagtcaa aattgccaaa aagaggacag cgatacggat aaccaagaga
     1081 acctcctaaa aactaagccg aatttacttc cgattcttga acgcgtcgtt caattcagtg
     1141 tgtcgactac ttaacaccac cggacggcca tctataaaca aatatcgtat gtgggtgcgg
     1201 atctcgagca aatcgccgtc ggtcacgacg aggttcgcca tcttgccggg ttcgatcgaa
     1261 ccaagctggt ccgccgcgtt catgatgcgc gcgggattga gcgtcaccgc cttcaacgcg
     1321 tccgacttcg aaagcccgta agccgcggcc atgcccgcgt actgcggcag gttgcgcacc
     1381 tcgggaccgc tgtcgcccgt cgagatcgca aacaaaactc ccgcctcctg aagcttcgcg
     1441 ggattctcgt agagcgtgtc gtaagcgtcg tcttcacgca ccggcagcga gaacacgccc
     1501 gtcaggatca ccggaacgtt cttctccttc aacaaactcg cgaccttcca cgcgtcattg
     1561 ccgccgagaa tgatcggctt gagtttcatc tcttccgcaa accggatcgc gccgcgaatt
     1621 tcgacctcgc gctccgcacg aaagatcacc ggctgttgtc cacgcacgta aggcacgagc
     1681 gattcaagca cgatgttttg atccggacgc ggcaacgaac gatctttcgc gtaagcgtcc
     1741 cgcgcgcggc catacgcttc cgcgtcgcgc aacatctttc gaatctgctc gagttgccgc
     1801 gcgtttgctt ccaacacttc cgacaggttc gtctggagtt gttgtggacc gccgaagcct
     1861 ccgccgccgc cgccgccgac gcgcggataa ttgatcacga gcgcggcctg cggaacgacc
     1921 gccatctctt tcggcgccgt gccgagcaaa ttgatccgcg ctgccgggcc cgaaatcaaa
     1981 cccccggttg gcgcggtgac ggtgttcgtc acgccttcga ctctcgtcac cgc
//
LOCUS       DASWTX010000755         4705 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_316053, whole genome shotgun sequence.
ACCESSION   DASWTX010000755 DASWTX010000000
VERSION     DASWTX010000755.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4705
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316053"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(125..1009)
                     /gene="rfbD"
                     /locus_tag="VGD38_11445"
     CDS             complement(125..1009)
                     /gene="rfbD"
                     /locus_tag="VGD38_11445"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: protein motif:HMM:NF016228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008831 - dTDP-4-dehydrorhamnose reductase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HEY0728677.1"
                     /translation="MKKILITGAGGLVGKASIEHCLANGDEVVAYDHQALDIGDAAKV
                     EAVITSERPDAVINCAAWTNVDGCEDDPAKAERANAAGPENLARACRLANAGLLTIST
                     DYVFDGSKDGFYTQRDQPRPLSVYGRFKLEGERRSQVEHARTIVVRTGYIFGPGGRNF
                     LSTVVERAKRGEKLKAITDSWGTPTYVRDLAARLRELVELDLPGIFHVVSGGDGATFE
                     TFTREALKLSRCEPGLLEPVSMDSLSRPAPRPRNSKMKCLLSEAIGLPPLPHWQEGLA
                     HFVARMDHEQGQNRGIAV"
     gene            complement(1006..2031)
                     /gene="rfbB"
                     /locus_tag="VGD38_11450"
     CDS             complement(1006..2031)
                     /gene="rfbB"
                     /locus_tag="VGD38_11450"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007846915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008460 - dTDP-glucose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HEY0728678.1"
                     /translation="MRTIFVTGGAGFIGSAFVRLLLEETVACEVVNFDALTYAGNLEN
                     LAGIDDPRYRFIRGDIADAEAVAHALEPGTDAIVNLAAESHVDRSIASADDFLRTNIL
                     GTQTLLDAARQNGVRRFVQVSTDEVMGSLPEQDDAFFTEDSPFAPNSPYAASKAAAEH
                     LVRAAHHTFGLDTVITRCGNNYGPRQFPEKFLPLAIANALSDREIPVYGDGLNVRDWI
                     YVEDHARAIFAALGKGESGRVYNIGARNPRRNLEVVESLLDALGKPRSLIRFVKDRPG
                     HDRRYAIDPARAETELGWRPRETWESGLRKTIDWYCANSQWIRNTQNGAYREYYKVQY
                     GTEVGGD"
     gene            2383..3324
                     /locus_tag="VGD38_11455"
     CDS             2383..3324
                     /locus_tag="VGD38_11455"
                     /inference="COORDINATES: protein motif:HMM:NF024627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HEY0728679.1"
                     /translation="MIKLYPSIKAIVVTTFILALATVAQAQATRTWVSGVGDDVNPCS
                     RTAPCKTFAGAISKTAKDGEISVLDPGGYGAVTITKSIYINGTHGAGYGSILNSLVNG
                     VVINITDPADVRKAVRLRALDINGVSTGINGVSILAANNVWIEDSVIDGNTGDGINSG
                     MGIRVNATNSINLFVSDTMIHKNVTGIRVSTTAGFATANIRNSNIEGNGTGVNAASNN
                     SFVTVTDSRIAFNTGAGATASVSGSNLTLSRCVIANNNPGINAAAGSAVKALSNDVIF
                     NVTGFGGTTAVIQTDGQNRNAGNTTPGAPGGGLVTIH"
     gene            3454..4665
                     /locus_tag="VGD38_11460"
     CDS             3454..4665
                     /locus_tag="VGD38_11460"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY0728680.1"
                     /translation="MALKRQAITSYPVAAFIEPNLYCNLQCPACPTGLRLGLRPTVAI
                     DEELFKGTIDEIGDYIFQLYMYNWGEPLLHKRTPEMIAYAKKKDINILLSTNLSINLS
                     DDYIDRLVLSGLDRMLVSIDGVTQESYARYRKNGNLALLRENLLRIQRAKQRLGRTTP
                     KLVWQFLVFRHNEHEIEQARALHKEWGADEFLVGGAEMPVEPHREGFEPSTIPAYNIY
                     HPDHPLQKESARQMTSDRACAWLYGVFVLNPNGKVSPCCAVPSEKLDFGEYQKGDFFS
                     IWNNETFRRARRMFTPAPGKSQPPPLKEEQKEAIGKRIDGMALRVVNNLREDKLICHE
                     CPIPFMQNYTDPIIADVAAAQRAGAAHATSLTGRARHLMNYMLMGGPMLNGMWRTRSF
                     VNKLVSLRAPQ"
BASE COUNT         1075 a         1409 c         1260 g          961 t
ORIGIN      
        1 cggtcgacgg caggcatcgg catcaagcgg ttatcttgcg acatcatatt tttcggcttt
       61 ccaactgcag aactctaatg aatgaagaat aatagcagag actcgttctg aggcaagtcg
      121 caactcagac cgcaatcccg cgattttggc cttgttcgtg atccatccgg gccacgaagt
      181 gggctaggcc ttcttgccaa tggggaagag gggggagacc tattgcttcg gacaacagac
      241 acttcatttt cgaatttcgc ggccgcggag cgggacgcga gagtgaatcc atgctcaccg
      301 gctcaagcag ccccggttca cagcgcgata gtttaagcgc ttcacgcgta aaagtctcga
      361 aagttgcgcc atcaccgcca ctaaccacgt gaaaaattcc cggcaggtcc aattcgacca
      421 gttcgcgtaa ccgggccgcg aggtcacgga cgtacgtcgg cgtaccccag gaatccgtga
      481 ttgctttcaa cttttcaccg cgttttgcgc gctcgacgac ggtgctcagg aaattacgcc
      541 cgcccgggcc aaagatgtaa cccgtgcgga ccacaatcgt gcgcgcgtgt tccacctgcg
      601 accggcgttc gccttcgagt ttgaaacggc cgtagacact caaaggccgc ggctggtcgc
      661 gttgcgtgta aaaaccgtct ttcgaaccat cgaaaacgta gtctgtcgag atcgtcaaca
      721 accccgcatt cgcgaggcgg caggcacgcg ccaggttctc aggtccggcc gcattggcgc
      781 gttccgcttt tgccggatcg tcttcgcagc cgtcgacgtt cgtccaagct gcgcaattga
      841 tcaccgcatc gggccgttcg ctcgtaataa cagcttcaac cttcgcagcg tcgccgatat
      901 cgagcgcctg atggtcgtac gcaacgacct catcgccgtt agcgagacaa tgctcgatac
      961 tcgccttgcc aaccagcccg cccgcgcctg tgatcagaat cttcttcaat cgccaccaac
     1021 ctcagttcca tactgcactt tgtaatactc gcgatacgcg ccgttctgcg tgttcctgat
     1081 ccactgcgaa ttagcgcagt accagtcgat cgttttccgc aatccgcttt cccacgtttc
     1141 gcgcggccgc cagccgagct ccgtttcagc acgcgccgga tcgatcgcat atctccgatc
     1201 gtgtcccgga cgatccttca cgaaccggat caaactgcgc ggcttgccaa gcgcgtcgag
     1261 caatgactca accacctcga gattacggcg aggattacgc gcgccgatgt tgtaaacacg
     1321 gcccgattca ccttttccta aagcggcaaa aatcgcgcgg gcgtggtctt cgacatagat
     1381 ccagtcgcgc acgttcaggc cgtcgccata gaccggaatc tcccgatcgc tgagcgcatt
     1441 cgcaatagcg agcggcaaaa acttttcggg aaactggcgt ggcccatagt tattgccgca
     1501 gcgcgtgatc accgtgtcca gaccaaacgt gtgatgtgcg gcgcgcacga gatgctcggc
     1561 cgcggctttc gaagcggcgt acggactgtt cggcgcaaac ggcgagtctt ctgtaaagaa
     1621 ggcatcgtcc tgttccggca agctccccat cacttcgtcg gtcgaaacct gcacaaaacg
     1681 ccgcacgcca ttttgccggg ccgcgtccag caaagtttgc gtgccgagga tgttggtccg
     1741 caagaaatca tccgccgacg cgatgctgcg gtccacgtgc gactcggcgg cgaggtttac
     1801 gatcgcatcg gtcccgggtt cgagcgcgtg ggccaccgcc tcggcatcag caatgtcccc
     1861 gcgaatgaac cggtagcgtg gatcgtcgat tccggccagg ttttcgaggt tacccgcgta
     1921 ggtaagcgcg tcgaaattca cgacctcgca agcgacggtt tcttccagca aaaggcgcac
     1981 aaatgccgag cctataaagc ccgcgccgcc ggttacaaag atagttcgca tcacttacaa
     2041 aagttcccgt ccaggcaaac aaaaaaattt ggaccagccc agtatacttt taagtctccg
     2101 attgcgcgtt atgggatcga gggaagcact gaaactaatt ttgttgacat gccgtcagac
     2161 ttgtagtaaa aaactgcgcc tttcaaacag gtgacgatct tgcatgagac aagattgtag
     2221 tcaaaaaccc tcgcttttcc gccagctctg attaccgagc tcaactccct aaggagactt
     2281 caactttttg caatttgcgt cacgttcgaa cccgggatgg taaatcactt tgactctgga
     2341 cccccccaga cccttcaacc actaaaagga gacagtagaa aaatgattaa gctttacccc
     2401 tctattaagg cgatcgtagt aaccactttc atcctcgctt tggctacggt cgctcaagcc
     2461 caagccactc gcacatgggt gtcaggtgtc ggcgatgatg ttaacccctg cagccgcact
     2521 gccccctgca agaccttcgc aggcgcaatc tccaagactg cgaaagacgg tgaaatcagc
     2581 gttctcgatc ccggtggtta tggcgcagtc acgatcacca agtccattta catcaacggc
     2641 acccacggcg ctggatacgg ctcgatcctg aactcgctcg tgaatggcgt ggtcatcaac
     2701 atcaccgacc cggccgacgt tcgtaaggct gtccgcctgc gcgcgctcga catcaatggc
     2761 gtttcgaccg gtatcaatgg cgtgagcatt ctcgcggcca acaacgtgtg gatcgaagac
     2821 agtgtcatcg acggcaacac cggcgacggc atcaactcgg gtatgggcat ccgcgttaac
     2881 gctacgaaca gtatcaacct cttcgtgtcc gacacgatga tccacaagaa cgtgaccggc
     2941 atcagagtca gcaccacggc cggtttcgca acagctaaca tccgcaactc gaacatcgaa
     3001 ggaaacggca ctggcgtcaa cgccgcttcg aacaacagct tcgttacggt aacggacagc
     3061 cgcatcgcgt tcaacacggg cgctggcgcg actgcaagcg tttccggctc gaacctgacc
     3121 cttagccgat gcgtcattgc gaacaacaac ccgggaatca acgccgctgc cggatcggcc
     3181 gtcaaggcgc tgagcaacga cgtgattttc aacgtcaccg gattcggcgg caccactgcc
     3241 gtgattcaaa ctgacggcca aaaccgtaac gcgggtaaca ccaccccagg tgctccgggc
     3301 ggcggtcttg tcacaatcca ttaatccggt tctccccaaa cccggatctc aagtccccgc
     3361 acgttacttc caaacgtgcg gggaatttct tatgctcagt gcctcgtgaa gaagccgaag
     3421 gcatatctca acgttttaaa gctcagggtc aacatggcac tgaagcgtca ggcgatcacc
     3481 agctaccctg tggcggcctt catcgagcca aacctttatt gcaatctcca gtgccccgcc
     3541 tgtccgacag gcttgcgcct gggcctgcgg ccgacagtcg cgattgacga agagctcttc
     3601 aaaggcacca tcgacgagat cggcgactac atatttcagc tttacatgta caactggggc
     3661 gagccgcttt tgcacaagcg aacgcccgaa atgatcgcgt acgcgaagaa gaaagacatc
     3721 aatatcctgc tgagcactaa cctcagcatc aacctgagcg acgattacat cgatcggctg
     3781 gtgttgagcg gactggaccg gatgctcgtt tcgatcgacg gcgtaacgca ggagtcgtat
     3841 gcgaggtacc ggaagaatgg aaatctcgcg ctgttgagag aaaacctgct gcggatacag
     3901 cgcgccaaac agcgtctcgg ccggacgacg ccgaaattag tttggcagtt ccttgttttt
     3961 cgtcacaatg aacacgagat cgagcaggcg cgcgcgctgc acaaggagtg gggcgcggac
     4021 gagtttctcg tcggtggcgc ggaaatgccg gtcgagccgc atcgggaggg tttcgagccg
     4081 tcaacgattc cggcttacaa catctatcat ccggatcatc cgttacagaa agaatcggcg
     4141 cgacagatga cgagcgatcg cgcgtgcgcg tggctgtatg gtgtgtttgt gctcaatccg
     4201 aatggcaagg tctcgccgtg ttgtgccgtg ccgtcggaga agctcgactt cggcgagtat
     4261 cagaaaggcg acttctttag tatctggaac aacgaaacgt tccggcgcgc acggcgaatg
     4321 tttacacccg cgccgggcaa gtcgcagccg ccgccattga aagaggaaca gaaggaagca
     4381 atcggcaaac ggatcgacgg aatggccctg cgtgttgtga acaacctgcg cgaggataaa
     4441 ctgatctgtc acgagtgtcc gataccgttc atgcaaaact acaccgatcc gatcatcgcg
     4501 gacgttgccg cagcgcaacg cgccggcgcg gctcacgcca catcgctgac cggccgcgcg
     4561 cggcacctga tgaattacat gctcatgggt ggtccaatgt tgaatggcat gtggcgcaca
     4621 cgctctttcg taaataaact ggtatcactc cgcgctcctc aataagtggc gcgctgaact
     4681 gctgaagatg aaagtcgtga tcctg
//
LOCUS       DASWTX010000756         1761 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_421335, whole genome shotgun sequence.
ACCESSION   DASWTX010000756 DASWTX010000000
VERSION     DASWTX010000756.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1761
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421335"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1646
                     /locus_tag="VGD38_11465"
     CDS             <1..1646
                     /locus_tag="VGD38_11465"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0728681.1"
                     /translation="TLFGLQNLIPRDAFGAWTMISILLVAFTAAKGIAEYLSTYLMAR
                     IGQSAVLKLRQDLYGHLLDQSATFFERHRTNYLVSRLVTSAAAIETAVTATVRDMLRE
                     SFSLIFFLAASFYYSWRLTLGSLVIAPIIGFLTAKFGKALRNLARESFEGSKELTDTA
                     QEALANQGIVKAYRAEKREASRFTKVAQRSVRANLRSASIAGLSPPTIEMIGILFVVG
                     LLFVGQQEIIAGRMSTSQFLTFLFFLFRSYDPMRKLSRLQNSMEQALAAAHHVWEVMD
                     EHAEIKEKPGAGALAPLQSEIELKNVSFGYANETRSVLHEVNLKIKAGTMVALVGESG
                     GGKSTLTKLLPRFHDPTSGAVLWDGIDLRDAKLASLRQQIALVTQETVLFNDTVRHNI
                     AYGKPDATDIEIEEAALIAFAHDFIREMPDKYDTIVGERGIFLSGGQRQRLAIARAIL
                     VNAPVLILDEATSALDAESERLVQRAIANLVRNRTTIVIAHRLSTVRRADVIVVMEAG
                     RIIEMGTHTELLAQGGQYRKLYALQFADEEEEPQVPQLI"
BASE COUNT          366 a          505 c          514 g          376 t
ORIGIN      
        1 caacgttgtt tggcttgcag aatctgatcc cgcgcgacgc gtttggcgcg tggacgatga
       61 tctcgattct gctggtcgct ttcacggctg caaagggtat cgccgagtat ctctcgacct
      121 acctgatggc gcgcatcggg cagtcagcag tgcttaaact gcggcaggat ctgtatggtc
      181 acctgctcga tcaatcggcg accttcttcg aacgccatcg cacgaactac ctcgtctcgc
      241 ggctcgtaac gagcgccgcg gctatcgaaa ccgcggtaac cgcgaccgtg cgcgacatgc
      301 tgcgggagag tttttccctc atcttctttc tggccgcgtc cttttattac agttggcgtt
      361 tgacgctcgg ttcgctcgtg atcgcgccga ttatcgggtt tctgacggcg aagttcggca
      421 aggcgctgcg caacctggcg cgcgagagtt ttgaaggcag taaggaactg acggacacgg
      481 cgcaggaagc actcgcgaat caaggcatcg tcaaagctta tcgtgcggag aaacgtgagg
      541 cgtctcgctt cacgaaggtt gcgcaacgga gtgttcgcgc gaacctgcgc agcgcgagca
      601 tcgcgggcct gtccccgccg acgatcgaga tgatcggaat tctcttcgtg gttggtctgc
      661 tcttcgtcgg ccagcaggag atcatcgccg gacgaatgag cacgtcgcag ttcctgacgt
      721 tcctcttctt tctgttccgc agttacgacc cgatgcgcaa gctttcgcgg ctgcagaaca
      781 gcatggaaca ggcgctcgcc gctgcacatc acgtttggga agtgatggac gagcacgcgg
      841 agatcaagga aaagcccggc gccggtgcgc tcgcgccgct acaaagcgag atagaactga
      901 agaacgtttc gtttggttat gcaaacgaga cgcggtccgt gttgcatgaa gtaaacctga
      961 agatcaaagc gggaacgatg gtcgcactcg tcggggagtc aggcggcggc aagtcgactt
     1021 tgacgaagct cctgccgcgt tttcacgatc cgacttccgg cgcggtgttg tgggatggaa
     1081 tcgatctgcg cgacgcaaag ctcgcgagct tgcggcaaca aatcgcgtta gtgacacaag
     1141 agaccgtgct cttcaacgac accgttcgtc ataacatcgc ttacggcaaa cccgacgcga
     1201 ctgacatcga gatcgaagag gctgcgctga tcgctttcgc gcacgacttc attcgcgaaa
     1261 tgcctgacaa atacgatacg attgtcggcg agcgcggcat ctttctttcc ggcggtcaac
     1321 gccaacgact ggccattgct cgcgctattc tggtaaatgc ccccgttttg attttggacg
     1381 aggcgacttc cgcgctcgac gccgagtcgg aacgcctggt gcagcgggcc attgccaacc
     1441 tcgttcgcaa tcgtacgacg atcgtaatcg ctcaccgcct ttcaaccgtg cgtcgcgcag
     1501 acgtaattgt tgtgatggag gccgggcgca tcatcgaaat gggtacccac accgaattgc
     1561 tggcccaggg cggacaatac cgcaagcttt acgcgctcca attcgctgac gaagaagaag
     1621 agccacaggt tccacagctt atatgaaatc aatgaccgga tacggcaagg cgatggtggc
     1681 gggtgatgac ttctccgtct ctgtcgacct caagaccgtc aacaatcggt ttctcgacat
     1741 tcacctccgc gtaggcgccg a
//
LOCUS       DASWTX010000757         1664 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_405197, whole genome shotgun sequence.
ACCESSION   DASWTX010000757 DASWTX010000000
VERSION     DASWTX010000757.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1664
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405197"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1664
                     /locus_tag="VGD38_11470"
     CDS             <1..>1664
                     /locus_tag="VGD38_11470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728682.1"
                     /translation="SLATNDIIYDPTRQTIYASVPSGAPGNADNVVRIDPATGAIGPV
                     VTSGSNPGRLALSADNQFLYVGLNGANSIRRFDLQSSSTANEFSLGIGSFGAPNRAQE
                     IEVVPGQTQSVAVALQGEGSNHEGVAIYDNGVARPNRAPQSPQNDVIEFAGAGTLFGY
                     NTTNSEFGLHRFTVDANGLTPSGATISNMIKAEADIKFDNGLLFASNGIVFDPQSATI
                     AGAFQLPGFGYAVAPDAANNRVYFITAADSDTFVSLWAFDLQTFLPVGKVTLTGLTGQ
                     PRRLIRCGPNVFAVRSSENQVFLVQTSSIQPIAPTPLPSPTLGADSVIRLQLPANDLI
                     FDPGTQKVYASVPGNVAGIGNTIAPIDPNTGNVSTPVFIGSNPNRLAVSDNNQFLYAG
                     LDGAAGVRRFDLASQAAGSQFPLGFNPSNGQLTALDIEVQPGNASVLAVTLKNRAFFP
                     SYDGIAVYDNGVRRANRFDSGVGGPAIEFGASPSVLYHMGGFAEFNKYTVDGSGLTLV
                     KSTRNLIVGGEFVFDDGKVYSASGQAADAETGAVFGSFPISGFVAS"
BASE COUNT          342 a          516 c          462 g          344 t
ORIGIN      
        1 tctcgctcgc cactaacgac attatttacg atccaaccag acagaccatc tacgccagtg
       61 tgccgagcgg cgctcccgga aacgccgaca acgtggtccg tatcgatccc gccaccggcg
      121 cgatcggtcc agtggtcacg agcggaagca atcccggccg attggcactc tccgccgaca
      181 accagtttct ctacgtcggt ctcaacggcg ccaattcgat cagacgtttc gatctccaat
      241 cgtcgagcac tgcaaacgag ttttcactcg ggatcggttc gttcggagct ccgaatcgcg
      301 cgcaggagat cgaagtcgtg ccgggccaga cgcagtcggt cgcggttgca ctgcaaggtg
      361 agggttccaa tcatgaggga gtcgcgattt acgacaacgg cgttgccaga cccaacaggg
      421 cgccgcaaag cccgcagaac gatgtgatcg aattcgccgg cgcaggaacg ctcttcggtt
      481 acaacacaac gaatagcgaa ttcggtctgc accgcttcac ggtggacgcc aacggtctca
      541 cacccagcgg cgccaccatc tcgaacatga tcaaagccga ggccgatatc aagttcgaca
      601 acggtctttt attcgcgagt aacggaattg ttttcgatcc gcagtctgcg acgatcgccg
      661 gcgcttttca gttaccggga tttggctacg cggtggcgcc tgacgccgcc aacaatcgtg
      721 tttatttcat cactgccgcg gacagcgata cgtttgtttc gctctgggcc ttcgatctcc
      781 agacgtttct tccagtcggc aaagtcacgc tcacgggcct gacgggccaa ccgagaagat
      841 tgatccgctg cggcccgaac gtgtttgccg tgagatcgag cgaaaaccag gtctttctgg
      901 tccagacgtc gtcaatccag ccgatcgctc cgactccgtt gccctcgccg acactcggcg
      961 ccgattcagt catcagactg caactgccgg ccaacgatct gatcttcgat cccggcacgc
     1021 agaaggttta cgccagcgta ccgggcaacg tcgccggcat cggcaacacc atcgcgccga
     1081 tcgatcccaa cacgggtaac gtcagcacgc ctgtattcat cggcagtaat ccgaacaggc
     1141 ttgcagtgtc ggacaacaat caattccttt atgccggtct cgacggagcc gcaggtgtac
     1201 gccgctttga tctcgcatcg caagccgcgg ggtcacagtt tcctttgggc ttcaacccat
     1261 ctaacggaca attaaccgcg ctggacatcg aggtccaacc aggcaatgcg tcggtgctgg
     1321 cagtcacgct gaagaacagg gcgttcttcc cttcgtacga cggcatcgct gtttacgaca
     1381 atggcgtgag gcgcgcgaac cgcttcgact cgggcgtcgg cggcccggcg atcgaattcg
     1441 gcgcttctcc atccgtgctt taccacatgg gtggcttcgc ggagttcaac aaatacaccg
     1501 tcgacggctc tggcttaacg ctcgtgaagt cgactcgcaa cctgattgtc ggcggcgagt
     1561 ttgtgttcga cgacggaaag gtttattcgg ccagcggaca agcagcggat gcggagaccg
     1621 gagccgtgtt tggctcgttt ccgattagcg gcttcgtcgc ttca
//
LOCUS       DASWTX010000758         1744 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_163762, whole genome shotgun sequence.
ACCESSION   DASWTX010000758 DASWTX010000000
VERSION     DASWTX010000758.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163762"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            142..633
                     /locus_tag="VGD38_11475"
     CDS             142..633
                     /locus_tag="VGD38_11475"
                     /inference="COORDINATES: protein motif:HMM:TIGR00177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MogA/MoaB family molybdenum cofactor
                     biosynthesis protein"
                     /protein_id="HEY0728683.1"
                     /translation="MQPIRIAIITISDGVASGTREDRSGARIRAWSEQHGYVVLQHLQ
                     IADDAAEITARLIDLADDACDLIVTTGGTGLTARDVTPEATMAAIDRNVPGIAEALRA
                     RGAANTKYSWLSRGVAGVRGRTLIVNLPGSENGVRDGLDLLDELAGHAVQLLRGIETD
                     KHA"
     gene            639..>1744
                     /locus_tag="VGD38_11480"
     CDS             639..>1744
                     /locus_tag="VGD38_11480"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY0728684.1"
                     /translation="MAERVLITTVDLEPAVRLRDAFEEAGFAVELLTPGEHIADVPDP
                     MLLILTGGLEEKQARRLAREAVDYNRLPVIALVDSPAQATQDLRFRLGVSEFAAKPID
                     PADVALIGRRLIERQHLRAVTGIVGETDAMREAMERVVQIAPVNATALITGESGTGKE
                     RIARGIHALSPRKHRPFIAANVAALPETLLESELFGHEKGAFTGAVGQRKGYFELAHH
                     GTLFLDEIGEMPHNTQAKLLRVLEEREFMRVGGESAIRVDVRVIAATNQNIRYLVDSG
                     RFRRDLYYRLNVLHIDLPPLRERKADIPLLVESFIRQTSKEHDRPQVTISTEAMTLLM
                     RYEWPGNVRELKNLIESMVVLAPGRVIQPQDIPP"
BASE COUNT          364 a          514 c          548 g          318 t
ORIGIN      
        1 cgagcatggt gtcggactcg catatgtcgc aaccgaagcg agcaaagtcg gcacgccgct
       61 gcagatcatg gtgcgcgaca aaccggtcgc cgcggaagtg cagcgtgcgc cgttctacaa
      121 ggaaggaacg gtcaagaagt agtgcagccg attcgcatcg ccatcatcac gatttccgac
      181 ggagttgcga gtggcacccg cgaagatcgc agtggcgcgc gcattcgcgc ctggagtgag
      241 cagcatggct acgtcgtgct gcagcatctc caaatcgccg acgatgcggc ggaaatcacg
      301 gcgcgcttga tcgatcttgc cgatgatgca tgtgatttga ttgtcacgac cggtggcacg
      361 ggactcacgg cgcgcgatgt tacgccggaa gccacaatgg ctgccatcga ccgcaacgtg
      421 cccggcatcg cggaggcgtt gcgcgcgcgc ggcgcagcca acacgaaata cagctggctt
      481 tcccgcggtg tcgccggtgt gcgcggccgc acattaatcg tgaatctgcc aggcagcgaa
      541 aatggtgtgc gcgacggatt ggacctgctg gacgagctgg cgggtcacgc agtgcaactg
      601 ctgcgcggca tcgaaaccga taaacacgcg taatcgaagt ggctgaacga gtactgatca
      661 cgacggtcga tctcgagccg gcagtccggc ttcgcgatgc ctttgaagaa gcgggcttcg
      721 cggtggagct gctcacgccc ggcgagcaca tcgcggatgt gccggatccc atgctgctca
      781 ttctgaccgg cggactcgaa gaaaagcagg ctcgtcgtct cgctcgtgaa gcggtggact
      841 acaatcgtct gccggtcatc gcactcgtcg attccccggc gcaggcaacg caggatctcc
      901 ggtttcgcct cggcgtgagt gaattcgcag ccaagcccat cgatcccgca gacgtcgcac
      961 tcatcggccg tcgtttaatc gagcggcaac atctccgagc ggtcaccggc attgtcggcg
     1021 aaaccgatgc gatgcgtgaa gcgatggagc gcgtcgtgca aattgcgccg gtcaatgcca
     1081 ctgcgctcat cacgggggaa agcggcaccg gcaaggaacg catcgcgcgc ggcatccacg
     1141 cactctcgcc gcgcaaacat cggccgttta tagccgctaa cgtcgcggcg ttgccggaga
     1201 ccttgctcga gagtgagttg ttcggtcatg agaagggcgc attcactggc gcagtcggac
     1261 agcgcaaagg ctatttcgag ctcgcgcacc acggcacgct gtttctcgat gaaatcggcg
     1321 agatgccgca caacacgcaa gcaaaactgt tgcgcgtgtt ggaagaacgc gaattcatgc
     1381 gcgtgggtgg cgagtcggcg attcgcgtcg acgtgagggt catcgccgcg accaaccaaa
     1441 acattcgtta cttggtggac agcgggcgat tccgccgtga tctgtattat cgcctgaacg
     1501 ttttgcacat cgacttgccg ccgctgcggg agcgcaaagc agacattccg ctgctggttg
     1561 aatcattcat tcgacagacc agcaaagagc acgatcggcc ccaggtaacg atctccaccg
     1621 aagcgatgac gcttctgatg cgctatgagt ggcctggcaa cgttcgtgag ttgaagaacc
     1681 tgatcgaatc gatggtcgtc ctggccccgg gacgggtgat tcaaccgcaa gatatcccgc
     1741 cgga
//
LOCUS       DASWTX010000759         5573 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_204013, whole genome shotgun sequence.
ACCESSION   DASWTX010000759 DASWTX010000000
VERSION     DASWTX010000759.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5573
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204013"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..440)
                     /locus_tag="VGD38_11485"
     CDS             complement(<1..440)
                     /locus_tag="VGD38_11485"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEY0728685.1"
                     /translation="MNTSPGQVVAVDTQVALGDEQTKKYLTLLELSKAIASHRDLSGL
                     FHDLACRLQSLIDFSHLGVLLYDSNRNVMRLHLVESCAPGKQQPAAEVPMEGSIAGWV
                     WTNQEAVVIRDLETEDRFPYAKILLEKPVKSICSVPLTTAHQRLG"
     gene            641..922
                     /locus_tag="VGD38_11490"
     CDS             641..922
                     /locus_tag="VGD38_11490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728686.1"
                     /translation="MLRITTHDNAGNISLFIEGKLAGPCVGELEKCWRRAVAGEAPLP
                     SLIDLTDVSYIDTNGKQLLSQMKEHGIKLVANGLMSKFFLDEIETHVKH"
     gene            960..1784
                     /locus_tag="VGD38_11495"
     CDS             960..1784
                     /locus_tag="VGD38_11495"
                     /inference="COORDINATES: protein motif:HMM:NF012925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 16 protein"
                     /protein_id="HEY0728687.1"
                     /translation="MKLLPLLLFIVISQCVCYSQSSSTAPGSGQWRLVWADEFNYQGL
                     PDAEKWSYDVGGHGWGNKELQFYSDRRKENARVEKGSLIIEARRDNWEGHEYTSARLV
                     SKAKGDWTYGRFEVRAKLPTGKGAWPAIWMLPTKPQYGGWPSSGEIDIMEQVGFEPHV
                     IHASVHTKSYNHNIKTHKTARTEVPNATSGFNVYAVEWTPEEIRGYVNERQYFSFKNE
                     RLTNASADFKQWPFDQPFHLLLNIAVGGTWGGQQGVDPAVWPQRMEIDYVRVYSHR"
     gene            1846..5007
                     /locus_tag="VGD38_11500"
     CDS             1846..5007
                     /locus_tag="VGD38_11500"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728688.1"
                     /translation="MSKHLLLVLVLCLFVCPVAAQTPASADDYNSIFKTVKWRSIGPF
                     RGGRSVAGTGVVGDSKTYYMGTTGGGLWKTDDMGMSWRNISDGFFKTGSVGAIAVAES
                     DPNVVYVGMGEHAVRGVMTHHGDGVYKSTDAGKTWKRVGLESSQHIARIIVHPKDPNI
                     VWVAAQGALYSKSTQRGVFKSVDGGATWKNVLFVDDKTGASELSMDMTNTRILYAAMW
                     EHGRLPWKVISGGPGSGLYKSTDGGETWERLKDGLPDELGKMAIAVSRSNPEKVYALI
                     ESDSDKEAGGLFVSTNGGKKWNRITNDHRLVQRAWYYIELFIDPKDENTIYVLSAAAY
                     RSADAGKTWETLSGTHGDFHDLWINPDNPANMIISNDGGAAITFNGGKIWSTQSNMPT
                     AQFYRINVDNQFPYRIYGGQQDNSSVSIASRELGGGGIGTSSWTYSAGGESAFLAFNP
                     DDPKYVMGGSYQGTIEVLDVKASASTQVMAAPIQYLAMDAKDLKYRYNWNAPIIWSKH
                     EPNVFYHGAHVLLKTTDMGRTWKEVSPDLTRNEKEKQGKGGGPYTNEAVGAENYGTLA
                     YVMESPHEKGVIYTGSDDGLVYVTRDGGANWKNVTPKGLAECLVNAIEVSPHDKATVY
                     IATTRYKFNDHTPGLYKSTDYGNTWTRIDNGIARNAFTRVVREDDARRDLLYAGTELG
                     VFISWNGGKDWSPFQLNLPITPITDLRVHKGNLIAATSGRSFWILDDLSVIRQYKGNV
                     NTFALYRPDNVHLVNGGSELDQTSEDFTGANTFRGVNPATGVVIYYQLPELKKDDEIT
                     MEIKDSAGNLVRSFTSKADEKFIRYEAGPRPNPTLSKTKGLNRFVWDLRYPTMVGVPH
                     VRIEGGFNGHKAIPGKYSITLKTPAQTLSSDVEILPNPLYPTDAATYAEYHRTMSGME
                     AELTTMHRLVNSLFEKQKQLESLLGTLPAGEKYAAIKKDGEALLKKMKAWDEDMVQRK
                     SKAYDDVENFPNKFTANYLFMINATESDIPRVNQPSLDRLRELNAQWATLKARADEIQ
                     NRDIPAFNKKLFDAGVGAIWTTD"
     gene            complement(5022..>5573)
                     /locus_tag="VGD38_11505"
     CDS             complement(5022..>5573)
                     /locus_tag="VGD38_11505"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY0728689.1"
                     /translation="EPERRLNVVIRTDALDASQLAEAARAEVKNFDPNQVIWRTQTLE
                     ELLGTSVAPRRFNMLLLGIFASVALVLAAVGLYGVMSYSVSWRTHEIGIRMALGAKRA
                     DVLRLVIRQGMTMALIGLGVGLLGAFAMSRVIAGLLYGVSPKDPLTFAGVSIVLLAVA
                     LLACLLPARRATRVNPIVALRSE"
BASE COUNT         1287 a         1537 c         1667 g         1082 t
ORIGIN      
        1 ccgagacgct ggtgcgccgt ggtcagcggc acactgcaaa tcgactttac gggcttttcg
       61 agcaggatct tcgcgtaagg aaaacgatct tccgtttcga gatcgcgaat gacgaccgct
      121 tcctggttcg tccagaccca gcccgcgatc gatccttcca tcggcacttc cgccgccggt
      181 tgttgcttgc ctggcgcaca cgattcgacc aggtgcaacc gcatcacgtt gcgattggag
      241 tcgtaaagca gcacgccgag atgtgaaaaa tcgatgaggc tttgcagccg gcacgcgaga
      301 tcgtgaaaga gccctgacag atcccgatgc gacgcgatgg ctttcgagag ttcgagaagg
      361 gttagatact ttttagtctg ttcgtcgcct aatgcgactt gcgtatcgac ggctacgacc
      421 tgaccgggag atgtgttcac gtcttaattc cttgcttgta ttcccgaaag gatacttgac
      481 cgggtgacgc cgggcaaccg cggtctccgc tgactgacga tataccgcca tttggcggtt
      541 tgctgtcacg ttcttgctcg aatgtaacgg catttgctgt cgattagttt ctaaaatgct
      601 gtggcaaagc agttgctctt ggcggcggcg ggaacatacc gtgttacgca tcactacaca
      661 cgacaacgct ggaaatatca gtctctttat cgaaggaaaa ctcgccggtc cgtgcgtcgg
      721 ggagttggaa aagtgctggc gccgcgcggt cgcgggcgaa gcaccgctgc cgtcgctgat
      781 cgacctcacc gacgtgagct acatcgacac caacggcaaa caattgctct cgcaaatgaa
      841 ggaacacggc atcaagctcg tcgcgaacgg tctgatgtcg aagtttttcc tcgacgagat
      901 cgaaacgcac gtaaaacact gattgcaaag tatcttgtta ggcggtagcc tcacgtttga
      961 tgaaactgct gcctctgctc ctattcatag tcatctcgca gtgtgtttgt tattcgcagt
     1021 cgtcttcaac cgcgccgggc tccggccagt ggcggctcgt ttgggctgat gaattcaact
     1081 accagggtct gcccgacgcg gagaagtggt cgtatgacgt tggcggccac gggtggggca
     1141 acaaggaatt gcagttctac agcgaccgtc gcaaagagaa cgcgcgcgtc gaaaagggtt
     1201 cgctcataat cgaagcccgc agagacaact gggaaggcca cgaatacact tcggcgcgat
     1261 tggtttctaa agctaagggc gattggacgt acggacgttt cgaagtgcgg gcgaagctgc
     1321 cgacgggcaa aggcgcgtgg ccggcgatct ggatgctgcc gacgaaaccg caatacggcg
     1381 gctggccgag cagcggcgag atcgacatca tggaacaggt cgggttcgag ccgcacgtga
     1441 tccatgcctc agtgcatacg aagtcgtata accacaatat caagacgcac aaaactgcgc
     1501 ggaccgaggt gcccaacgcc acgagcgggt tcaacgtgta cgcggttgaa tggacgccgg
     1561 aagagattcg cggctacgtc aacgagcggc agtacttcag tttcaagaac gaacgtctta
     1621 caaatgcttc tgctgatttc aagcagtggc catttgacca gccgtttcat ctgctgctga
     1681 acatcgccgt cggcggcacg tggggcggcc agcagggtgt cgatccggcc gtctggccgc
     1741 agcgcatgga gatcgattac gtccgcgttt atagccacag atgaacgcag gctgtattat
     1801 tcgccaaatt ctttgactcg acttttcaga cgaggaccca tttgcatgtc taaacacctg
     1861 ctcctagtgc ttgttttgtg tttgttcgtt tgccccgtag ccgcgcagac tcctgcgagc
     1921 gcggatgatt acaacagcat tttcaagacc gtgaaatggc gttcgatcgg cccgtttcgc
     1981 ggcggacgtt cggttgccgg cacgggcgtc gtgggcgatt cgaagaccta ttacatggga
     2041 acgaccggag gcggtctttg gaaaaccgac gacatgggaa tgagttggcg aaacatctcc
     2101 gacggttttt tcaaaacggg gtccgtcggc gcgatcgctg tcgctgaaag cgatccgaac
     2161 gtggtttacg tcggcatggg cgaacacgcg gtgcgcggtg tgatgacgca ccacggcgac
     2221 ggcgtctaca aatcgaccga cgccggaaag acgtggaagc gtgtcggact cgaatcgtcg
     2281 cagcacatcg cgcgcatcat cgttcatccg aaagatccga acatcgtgtg ggtcgcggcg
     2341 cagggcgcgt tgtacagcaa gtcgacgcaa cgcggcgtgt tcaagtccgt cgacggcggt
     2401 gcgacgtgga agaacgtgct gttcgttgac gacaaaaccg gcgcgtcaga gctctcgatg
     2461 gacatgacca acacgcggat tctgtacgcc gcgatgtggg aacacggccg cttgccgtgg
     2521 aaagtcatca gcggcggacc gggcagcggg ctttacaagt caaccgacgg cggcgagacg
     2581 tgggaacgtt tgaaagacgg attgcccgac gaactcggca agatggcgat cgccgtaagc
     2641 cgttcgaatc ccgaaaaagt ctacgcgttg atcgagagcg actctgataa ggaagcgggt
     2701 ggtttgtttg tttcaaccaa cggcggcaaa aaatggaacc gcatcacaaa cgatcatcgc
     2761 ctggtccaac gcgcgtggta ctacatcgag ctcttcatcg atcccaaaga cgaaaacacg
     2821 atctacgttt tgagtgccgc ggcgtatcgt tcggctgatg cgggcaaaac gtgggaaacg
     2881 ctttccggca cgcacggcga ttttcacgac ctttggatca atcccgacaa tcccgccaac
     2941 atgatcatct ccaacgacgg cggcgccgcg atcacgttca acggcggaaa gatctggagc
     3001 acgcagagca acatgccgac cgcgcagttc taccggatca atgtcgacaa ccagtttccg
     3061 tatcgcatct atggcggcca gcaggacaac tcgtctgttt cgatcgcgag ccgcgagttg
     3121 ggcggtggcg gaatcggcac gtcgagctgg acgtactcgg cgggcggcga gagcgcgttt
     3181 ctcgcgttca atccggacga tccgaagtac gtgatgggcg gcagttatca gggaacgatc
     3241 gaagtgctcg acgtgaaagc aagcgcgagc acgcaggtga tggcggcgcc gattcagtac
     3301 ctcgccatgg acgcgaagga cctcaagtat cgttacaact ggaacgcgcc gatcatctgg
     3361 agcaagcacg agccgaacgt cttctatcac ggcgcgcacg ttctattgaa gacgaccgac
     3421 atgggccgca cgtggaaaga agtctcgccc gatctcacgc gcaacgaaaa agagaaacag
     3481 ggcaaaggcg gtggtccata cacgaacgaa gccgtcggcg cggaaaacta cggcacgctg
     3541 gcgtacgtga tggagtcgcc gcatgagaaa ggcgtgatct acacgggcag cgatgacggt
     3601 cttgtttatg tcacgcgtga cggtggcgcg aattggaaga atgtgacgcc gaaaggtctc
     3661 gccgagtgtt tggtcaatgc gatcgaagtg tcgccgcacg acaaagcgac ggtttacatc
     3721 gcgaccacgc gttacaagtt caacgaccac actccgggtt tgtacaagag cactgattac
     3781 ggaaatacct ggacgcggat cgacaacggc atcgcgcgca atgcgttcac gcgtgtggtg
     3841 cgtgaggacg atgcgcgccg cgatctgttg tatgcgggca ccgagctcgg cgttttcatt
     3901 tcgtggaacg gcggaaagga ttggtcgccg tttcagttga acctgccgat cacgccgatc
     3961 actgacttgc gcgttcacaa gggaaacctg atcgccgcga cgtcgggaag atcgttctgg
     4021 atactcgacg acctgagcgt gattcgccag tacaaaggca acgtcaacac gtttgcgctg
     4081 tatcggcctg acaatgttca tctcgtcaac ggcggcagcg agttggacca aacgagtgaa
     4141 gacttcacgg gcgcgaacac gtttcgcggc gtgaatcccg cgaccggcgt cgtcatttac
     4201 taccaactgc ccgaactgaa aaaagacgac gagatcacga tggagatcaa agactccgcc
     4261 ggcaatctcg tgcgcagctt cacgtcgaaa gcggatgaga agtttattcg ctacgaagct
     4321 ggtccgcggc cgaacccgac gctgtcgaaa acgaagggct tgaaccggtt tgtttgggac
     4381 ctgcgttatc cgacgatggt tggtgttccg cacgtacgca tcgaaggcgg cttcaacggt
     4441 cacaaagcga taccgggtaa gtacagcatc actttgaaaa cgccggcgca aacgctatcg
     4501 agcgatgtcg agattctccc gaacccgctg tatccgaccg acgccgcaac gtacgcggaa
     4561 tatcaccgca cgatgtcggg catggaagcg gaactgacta ccatgcaccg gctcgtgaac
     4621 agtcttttcg aaaagcagaa gcagttggag tcgttgctgg gtacgcttcc ggcgggtgag
     4681 aagtacgcgg cgatcaagaa agacggcgag gcgttgttga agaagatgaa ggcgtgggat
     4741 gaggacatgg tccagcgcaa gtcgaaagcc tacgacgacg tcgaaaactt cccgaacaag
     4801 ttcaccgcga attacctgtt catgatcaac gcgacggaaa gcgacattcc gcgagtgaac
     4861 cagccttcgc tggatcgcct gcgcgagctg aacgcgcaat gggccacgtt gaaagctcgc
     4921 gcggatgaaa tccagaatcg cgacataccg gcgttcaaca agaaactgtt tgacgccggg
     4981 gtcggagcga tctggaccac ggattagacg gattaacgtc gctattcgct tcgcagcgca
     5041 acgattggat tgacgcgtgt tgctcggcgt gccgggagaa ggcacgccag caacgcgacg
     5101 gccagcaaca caatcgaaac gcccgcgaac gtcagcgggt cttttggtga aactccgtaa
     5161 agtagcccag ctatcacacg cgacatcgca aatgcgccga gcagaccgac gcccaggcca
     5221 atcaacgcca tcgtcattcc ctgccggatc acgagccgca acacgtcggc tcgtttcgcg
     5281 ccgagcgcca tgcgaatacc gatctcgtgt gtgcgccagc taaccgaata actcatcacg
     5341 ccgtagagcc cgacagccgc gagcacaagc gcgacgctcg caaagattcc gagcagcaac
     5401 atgttgaaac ggcgcggtgc gaccgacgtg cccaacagtt cctcgagagt ttgggtgcgc
     5461 cagatcacct ggttcggatc gaagttcttc acttcagcgc gtgcggcctc cgcgagctgc
     5521 gacgcatcga gcgcgtccgt gcgaatcacg acgttcaggc gccgctcggg ttc
//
LOCUS       DASWTX010000760         3260 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_361746, whole genome shotgun sequence.
ACCESSION   DASWTX010000760 DASWTX010000000
VERSION     DASWTX010000760.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3260)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3260)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3260
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_361746"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..672)
                     /locus_tag="VGD38_11510"
     CDS             complement(<1..672)
                     /locus_tag="VGD38_11510"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY0728690.1"
                     /translation="MLPYLLLLLLPLVQTNATLELIVKDPSGALVSKAQVQLIRNGKP
                     QSSAQTNQRGEARFNKLPPGRYQVHIEAAGFKAFDLQDVDLTAGANRKEVALEIDPIT
                     VDVDVADEAQVRNTNPNGPAFSNVLTAEQIAELPDDPDEFENAINQLAGPGAQIRVNG
                     FRGGKLPPKNQIREIRFRLNPYAAENHDAGFGLVDIITKPGVNSWHGSFNFGFRDEAL
                     NARQVF"
     gene            complement(672..1574)
                     /locus_tag="VGD38_11515"
     CDS             complement(672..1574)
                     /locus_tag="VGD38_11515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728691.1"
                     /translation="MKLLTLLLLSLVSIPTVYANDQRANEILKQAREAIGGEQRLQKL
                     EALHINGQYRRVFGERQMAGDREISIALPNKYLVEDSMNPGGLSTAMINTRGLNGERA
                     WSGSSGGGGGMVFRIGGPGGAQLTPEQMEAGLRRIYQAEFTRYVLAMTLAAPASLSLD
                     YKYAGESDVEGEPVDVVDVSGPDNFAVRLFFDKKNHLPLLLSYRGPKPRIMTLSRPAG
                     GSAKPEDLKKSAEEAQKKLHAEAPVAPEEVDFFIRLSDHKKVDGLMLPFKLTFLTDSE
                     VSEEFEISKYQVNPQFKADKFEKH"
     gene            1669..2412
                     /gene="pgsA"
                     /locus_tag="VGD38_11520"
     CDS             1669..2412
                     /gene="pgsA"
                     /locus_tag="VGD38_11520"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008444 -
                     CDP-diacylglycerol-glycerol-3-phosphate
                     3-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEY0728692.1"
                     /translation="MNLPNGLTLLRIFIVPLLVVVLLTPFSENWFGVPRHILGVLMFL
                     GAALTDYLDGHIARSRGQVTRLGQLLDPIADKLLISAALISLVENQLAPAWAVVIIIG
                     REFAVTGLRSIAAVEGVVISASKMGKFKMLAQVVTVALLIGSSVAGQPPVANFGRPFP
                     AIEFWSVPELRMAWQHLVADGPTTGNDWQVLIYTAGRAMLWLVVISSCTSMYGYFSSF
                     YRAVVAGRAEQSRKEAQKAQKEAQKAQIV"
     gene            complement(2423..>3260)
                     /locus_tag="VGD38_11525"
     CDS             complement(2423..>3260)
                     /locus_tag="VGD38_11525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728693.1"
                     /translation="QLQRLPQMPEVVGAENEQEQRMFTSGNIVYINAGSRQGITEGHN
                     FQIIRPRGDVKGVHREKKGYLGTYIQEVGQLQVFKVGENTSAAQITSSCGNMVLLGDF
                     LTQIPDRASPLQQPETNVERFVDPSQKQTGRLMMAKDNREMVTRNDVVYIDLGVEDNV
                     KAGDYLTIYRPLGTGNITRVDNEEMARNRSVGFQSERYRGGGFSSQGSRAKDSTAFQD
                     TEGRYRYNPITTREVKKHRPVMPRKVVGEMVIIDVQKRTATAIITRTVGEVHTGDWVE
                     MK"
BASE COUNT          608 a          896 c          992 g          764 t
ORIGIN      
        1 gaacacctgt cgcgcgttca gcgcttcatc gcggaagccg aaattgaatg aaccgtgcca
       61 ggagttcacg ccgggcttgg tgatgatgtc gacgagacca aagccggcgt cgtgattctc
      121 ggcggcgtac ggattgagac gaaaacggat ctcgcggatt tggttcttcg gcgggagttt
      181 gccgccgcga aaaccgttga cgcggatttg cgcgcccgga ccggcgagtt ggttgatcgc
      241 gttttcaaac tcgtccgggt cgtcagggag ttcggcgatc tgttcggcgg ttagcacgtt
      301 gctgaacgcc gggccgttcg gatttgtgtt tcgtacctgt gcttcgtccg cgacgtcgac
      361 gtcgacggta atcggatcga tctcgagtgc gacttctttg cggtttgcac cggcggtgag
      421 atcgacgtcc tggagatcga aagccttgaa cccggcggct tcaatgtgaa cctgatagcg
      481 tcccgggggg agcttattga accgcgcttc accacgctga tttgtttgcg cgctcgactg
      541 tggttttccg ttcctgatca gttgcacttg cgctttgctg accagcgcgc cggacggatc
      601 tttaacgatc agctccagcg tggcgttcgt ttgaacgagc ggaagcagaa gcaaaaggag
      661 ataggggagc atcagtgttt ctcgaacttg tcggctttga actgcgggtt cacctggtac
      721 ttcgagatct caaactcttc cgagacctcg ctgtcggtga gaaacgtcag cttgaacggc
      781 agcatcaggc cgtcgacttt tttgtgatcg ctgagacgga tgaagaagtc gacttcttcg
      841 ggcgcgaccg gagcctcggc gtggagtttc ttctgggcct cttccgcaga tttttttaga
      901 tcctcaggct ttgcggagcc gccggccgga cgactcaaag tcataatcct aggtttggga
      961 ccacgataac tcagcaacag cggtaaatga tttttcttgt cgaagaagag acgcaccgcg
     1021 aagttgtcag gaccgctaac gtcgaccacg tccacgggtt cgccttcgac atctgactcg
     1081 cccgcgtatt tgtagtcaag cgacaacgac gcgggtgcag cgagcgtcat cgcgagcacg
     1141 taacgcgtga attcagcttg atagatccgg cgcagcccgg cttccatctg ttcgggcgtc
     1201 aactgcgcgc cgcctggacc accaattcgg aaaaccatgc caccaccgcc gccgctcgaa
     1261 ccgctccacg cgcgctcgcc gttcagcccg cgcgtattga tcatcgcggt gctcagcccg
     1321 ccgggattca tcgaatcttc gacgaggtac ttgttcggca gcgcaatgct gatctcgcgg
     1381 tcgccggcca tctggcgttc gccgaagacg cggcggtact ggccgttgat gtgcagcgct
     1441 tcgagttttt gcaggcgttg ttcgccgccg atagcctcgc gagcctgctt caggatctcg
     1501 tttgcgcgct gatcgttggc ataaacagtt gggattgaaa caagggatag aagtagtagg
     1561 gtcaggagtt tcatactccg tattcaacgg agttgcgcga aaagttccac aaagaaaaga
     1621 aacgccgtcg ttgacctctt ttaaatagcg acctacactc gcagcaccgt gaacctgccc
     1681 aatggattaa cgcttctgcg gatcttcatc gtgccgctgc tggtggtcgt cttgttgacg
     1741 ccgttttccg aaaactggtt tggcgtcccg cggcacatcc tgggcgtgtt gatgtttttg
     1801 ggtgcggcgc tgaccgacta tctcgacggg cacatcgccc gcagccgtgg acaagtcacg
     1861 cggctgggcc aactactcga cccaatcgcc gacaagctgc tgatctccgc ggcgttgatc
     1921 tcgctggtcg agaatcaact cgcgccggcg tgggccgtcg tcattattat tggccgcgag
     1981 tttgctgtga cgggactacg ttcgatcgcg gctgttgaag gcgtggtgat ctcggcgtcg
     2041 aagatgggca agttcaaaat gttggcccag gtggttacgg tggcgctgct aatcggatcg
     2101 agcgtcgccg ggcagccgcc ggtggcaaac ttcggacggc cgtttccggc gatcgagttc
     2161 tggtcggtgc ctgagctgcg catggcgtgg caacacctgg tcgccgatgg accaacgacg
     2221 gggaacgatt ggcaggtgtt gatttacacg gctggcagag caatgctctg gctcgtggtg
     2281 atctcgtcgt gtacttcgat gtacggatat ttcagctcct tctaccgcgc ggtcgtggcc
     2341 ggccgcgcgg agcagagccg caaagaagcg cagaaggctc agaaggaagc gcagaaagca
     2401 cagatcgttt gagatcggtg gtctacttca tctcaaccca gtcgccggtg tgaacttcac
     2461 cgaccgtgcg cgtgatgatg gcggtcgcgg ttctcttctg cacgtcgata atcaccattt
     2521 cacccacaac cttgcgcggc atcaccgggc gatgcttttt gacttcgcgg gtcgtgatcg
     2581 ggttgtagcg ataacgtccc tcggtatcct gaaaggccgt cgaatccttc gcacgcgaac
     2641 cctgactgga aaaaccgccg ccgcgataac gttcgctttg aaaaccgacc gaacggttgc
     2701 gcgccatctc ttcgttgtcg acgcgcgtga tgtttccggt gccgagcggg cgatagatcg
     2761 tcaggtagtc gccggctttg acgttgtcct cgacgccgag gtcgatgtag acgacgtcgt
     2821 tgcgcgtcac catctcgcgg ttatctttcg ccatcatcag gcggccggtc tgtttttggc
     2881 tcggatcgac gaaacgctcg acgtttgttt caggctgctg caacggtgag gcgcgatctg
     2941 gtatctgagt aagaaaatcg cccaacaaaa ccatattgcc gcaggaagag gtgatttgcg
     3001 ccgcggaggt gttttctccg actttgaaaa cttgtagctg gccgacttcc tgaatgtaag
     3061 tgccgagata gcctttcttt tcgcggtgaa cgcctttaac gtcgccgcgc gggcggatga
     3121 tctggaagtt gtggccttcg gtaatgccct ggcgcgaacc ggcattgata taaacgatgt
     3181 tgccgctggt gaacatgcgt tgttcctgct cgttctcggc gccgacgact tcgggcattt
     3241 gtggcaggcg ttgaagctgg
//
LOCUS       DASWTX010000761         1935 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_163802, whole genome shotgun sequence.
ACCESSION   DASWTX010000761 DASWTX010000000
VERSION     DASWTX010000761.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1935)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1935)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1935
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163802"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..978
                     /locus_tag="VGD38_11530"
     CDS             <1..978
                     /locus_tag="VGD38_11530"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HEY0728694.1"
                     /translation="PTAQPAPTPHAVMSAASFYPQKIPAPATTAIQFSSTLALELTAP
                     DVTQEPAGTNVSMDVSPPVTGESGPVSPIPLNVPSEDVSLTKVYRVGPGDVLDIRINE
                     SQPQQSTLFTVTPAGLLEHPLLAEPLSVAALTTEEIQTKIQDDLKARALIENPAVSVG
                     VRDYTSHAILVSGLVKDSGTKFLRREAIPLYVVVADAQPLPEAAKVTVVRNERNQVFE
                     IELTNVTHMNMLVRTGDVINLHPNETQFVYVGGEVKAPGEKIFRRGLTLMQAILSAGG
                     VTSKSKVAEVGRDDGRGFLVKTSFTLKDIQTGKVMDPQIKAGDRIMILR"
     gene            1001..1384
                     /locus_tag="VGD38_11535"
     CDS             1001..1384
                     /locus_tag="VGD38_11535"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY0728695.1"
                     /translation="MNDFPPAVPEIPVTDMNAALEYYERKLGFEVDWGGAEGGIAGIS
                     KGQCRMFLTDQAFRAYHGNAVPVLIWLNVNSKEEVDELHERWKASGAKITSPPESKPW
                     KLREFTASDLDGNLFRVFYDFSRDN"
     gene            1390..>1935
                     /locus_tag="VGD38_11540"
     CDS             1390..>1935
                     /locus_tag="VGD38_11540"
                     /inference="COORDINATES: protein motif:HMM:NF016946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008488 - gamma-glutamyl carboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0017187 - peptidyl-glutamic acid
                     carboxylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HTTM domain-containing protein"
                     /protein_id="HEY0728696.1"
                     /translation="MRRLCAALFKPVDISFLVAFRIIFGGVMVWEVYRYFTNGWITRY
                     FIEPVLTFPYYGFGWVKPWPGRGMYVHFAVLGVAAACVMVGFLYRFAAPVFFLAFTYF
                     FLLEQTRYLNHFYLVCLISFLMCFLPAERAFSVDALLRPKIRSDVVPAWTLWLLRAQV
                     GIPYFFGGIAKLNSDWILGGEP"
BASE COUNT          428 a          527 c          531 g          449 t
ORIGIN      
        1 ccaacggcac aacccgcgcc tactcctcac gcagtaatgt cagcagcaag cttttatcct
       61 caaaagattc cggcgccggc taccacggcg attcaattct cctccacttt ggcgctcgag
      121 ttaactgccc ctgacgtaac acaggaaccg gccggcacga atgtctcaat ggatgtgtcg
      181 ccaccagtga ctggtgaaag cggaccggtg agcccgatac cgctcaacgt tccgagcgag
      241 gatgtttcac taacaaaggt ttatcgcgtt ggaccaggcg acgttttaga cattcgtatc
      301 aacgaatcgc agccgcagca atcgacactc tttacagtga cgcccgcggg cctgttggaa
      361 cacccgctgc tcgccgaacc gttaagtgtt gccgcgctta ctacggaaga aatccaaacc
      421 aagatccaag acgatctgaa ggcgcgcgca ttgatcgaaa accctgcagt gagtgtggga
      481 gtgcgcgact acaccagtca tgcgatcctg gtcagcgggt tggtaaagga ctccgggacc
      541 aagtttctac gacgtgaagc gatcccgctt tatgtcgtcg tggcggacgc tcagccgctg
      601 cctgaagcag cgaaggtcac agtggtgcgc aatgagcgaa accaggtgtt tgaaatcgaa
      661 ctcacaaacg tcacacacat gaacatgctg gttcgtaccg gcgacgtcat caatctccac
      721 ccgaatgaaa cgcagttcgt ttacgtcggc ggcgaagtca aagcacccgg cgagaagatc
      781 tttcgccgtg gattaacgct catgcaggct attctttcag ccggcggcgt gacgtcgaaa
      841 tcgaaagtcg ctgaggtggg ccgtgacgac gggcgaggtt ttctggtaaa aaccagcttc
      901 acgttgaagg acatccagac gggaaaggtc atggatccgc aaatcaaagc cggcgatcga
      961 ataatgattc tgcgctgatt aaacggacca taaaaatccg atgaacgatt ttcctcccgc
     1021 agtgcctgag atacctgtga ctgatatgaa cgcggcgctg gagtattacg agcgcaaact
     1081 cggcttcgaa gtagattggg gcggcgccga aggcggcatc gcgggaatct cgaaaggcca
     1141 gtgccggatg ttcctcacgg accaggcttt tcgcgcgtat cacggcaacg ctgtgccggt
     1201 gctgatctgg ttaaatgtga acagcaaaga agaagtagac gaactgcacg agcgctggaa
     1261 agcgagcgga gcaaaaatca cctcacctcc ggagtcaaag ccatggaagc tccgcgagtt
     1321 cacggcgtct gacctggacg ggaatctgtt tcgcgtcttt tacgacttct cgcgggataa
     1381 ctgagaaaaa tgcgacgttt gtgcgcagct ctcttcaaac cagtcgatat ctcattcctg
     1441 gttgccttcc gaatcatctt cggcggcgtc atggtgtggg aagtttatcg ctacttcact
     1501 aacggctgga tcactcgtta cttcatcgaa cccgttctta cttttcctta ctacggtttt
     1561 ggttgggtga agccgtggcc cggccgcggc atgtacgttc actttgccgt gctcggcgtc
     1621 gcagccgctt gtgtgatggt cgggtttctt tatcgctttg cggcgccggt cttctttctt
     1681 gctttcacat acttttttct actggagcag acgcgttatc tcaatcactt ttatttggtc
     1741 tgcctgatca gttttctgat gtgtttcctc ccggccgaac gcgctttctc ggtcgatgcg
     1801 ttgttgcgcc cgaagatccg ctcggacgta gttcccgcgt ggacgttgtg gttgttgcga
     1861 gcacaggtcg gcataccata tttcttcggc ggcatcgcga agctcaacag cgattggata
     1921 ctcggcggcg agccg
//
LOCUS       DASWTX010000762         1759 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_382976, whole genome shotgun sequence.
ACCESSION   DASWTX010000762 DASWTX010000000
VERSION     DASWTX010000762.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1759)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1759)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1759
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_382976"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1345)
                     /locus_tag="VGD38_11545"
     CDS             complement(<1..1345)
                     /locus_tag="VGD38_11545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728697.1"
                     /translation="MKLASPKLDTSHLSRDEEALSRCELALEFKDKADYASALQIMRP
                     LWHGVGERPDTRDLHPATVAEVLLCTGILTGWIGSRDQIPDAQETARNLITESINYHE
                     SHKDIRKVAEAQSELAYCYWRDGQINEARIMLQEALERLPPAGLKRARALLKLADVEQ
                     SAGRHYDALKILTDNASVFTKIRHLATKGSYHNELAMTFEQIAVGDHRPDYFHCALVE
                     YKVAEHQFKLAKNHIFRACVKNNVAVVLTNLRRFKEAHKHLDQARDLTVRFKDRTRTA
                     QVDCTRAELLIAEGKFKAAEAVARRAASALDKVGHRTWLADALISQATALARLGKHER
                     AHVVLQRAMEVAHEADALNKAGLAALTLIEEVDRLSPDTLQAAYQQAREWLADSQSRQ
                     VLSRLNAAAGKLAARVRKELSRDEAIEILLSKPCDLDQKLLEYEHDLIKQALKQSN"
     gene            1493..1714
                     /locus_tag="VGD38_11550"
     CDS             1493..1714
                     /locus_tag="VGD38_11550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728698.1"
                     /translation="MKPVVLAVALTGLLSVTALAGNIPTNDGAAPGNIPTSDVVAPPP
                     PPASQATASTSSSVTLANFVLTIVTLINR"
BASE COUNT          336 a          507 c          500 g          416 t
ORIGIN      
        1 cgttcgactg cttcaacgcc tgcttgatca agtcgtgctc gtactcaagt agcttttggt
       61 ccaggtcgca gggtttgctc aacaggatct cgatcgcttc gtcgcggctc agttccttgc
      121 gcacgcgcgc ggcgagtttt ccagccgccg cattcaatcg cgacaacacc tggcggcttt
      181 gggagtcggc caaccactcg cgcgcctgct gatacgctgc ttgcaaagtg tccggcgaca
      241 ggcgatccac ttcctcaatt aacgtaagcg cagccaaacc ggctttgttg agtgcgtctg
      301 cttcgtgcgc cacttccatc gcgcgctgca aaacaacgtg agcgcgttcg tgtttgccca
      361 agcgggccaa cgcggtcgcc tgtgagatca gcgcatctgc aagccaggtt cgatgaccga
      421 ctttgtctaa cgccgatgcc gctcggcggg cgacggcttc agcggctttg aactttcctt
      481 ccgcgatcag cagttcagca cgagtgcagt cgacctgtgc cgtacgcgtg cgatccttga
      541 agcgaacggt caggtctcgc gcctgatcga gatgtttgtg agcttccttg aaccggcgca
      601 ggttcgtaag cacgaccgcg acgttgttct taacgcaagc acgaaaaatg tgattcttcg
      661 ctagcttgaa ttgatgttcg gcgactttat attcaaccag cgcgcagtga aagtaatcag
      721 gccggtggtc cccgactgcg atttgctcga acgtcatcgc tagttcgttg tggtaagagc
      781 ctttggtcgc aagatgtcga atcttggtaa agaccgaagc attgtcggtg agaatcttga
      841 gcgcgtcgta atgcctgccc gctgactgtt cgacgtccgc cagcttgagg agcgcccgcg
      901 ctcgtttgag tccagccggc ggcagccgtt cgagcgcctc ctgcagcatg attcgcgctt
      961 catttatctg gccgtctcgc cagtagcaat aagcgagctc cgactgcgcc tcggcaacct
     1021 tcctgatgtc cttgtgcgac tcgtgatagt tgatgctctc ggtgatcagg tttcgggcgg
     1081 tctcttgcgc gtccgggatc tgatcgcggc tgccaatcca gcccgtcagg attcccgtgc
     1141 aaagcaggac ctcagccacc gtcgccggat gaaggtctct ggtgtcgggc cgctcgccga
     1201 ctccatgcca caatgggcgc atgatctgaa gagcgcttgc gtagtctgct ttgtctttga
     1261 attccaaagc gagttcgcac cgggacagag cttcctcgtc ccgcgacagg tgcgacgtgt
     1321 cgagctttgg tgaggctaac ttcaattgat agaccttctt gcggtgagta aaaagagcct
     1381 tgcgggcgga tattaaaccg cgttcgggcc ggcccgcaag aactttctat attggcttcg
     1441 cgatttctga tacaagtaga cttgcatcct caattaaaag gagactctca acatgaaacc
     1501 cgtggtattg gctgttgctc ttacagggtt gctgtctgtc accgctctag cgggaaatat
     1561 tccgaccaac gacggcgcgg cgccgggcaa tatcccgacc agtgatgttg tggcgccgcc
     1621 accgccgccg gcatcacagg cgacggcgag cacgagttca agtgtgacac tcgcgaattt
     1681 tgtactcacg atcgttacgc tgataaaccg ctagactgaa gtggtaactc ccagttgggt
     1741 acaactgccc gtgtggcgg
//
LOCUS       DASWTX010000763         5181 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_99075, whole genome shotgun sequence.
ACCESSION   DASWTX010000763 DASWTX010000000
VERSION     DASWTX010000763.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5181
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99075"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3744
                     /locus_tag="VGD38_11555"
     CDS             <1..3744
                     /locus_tag="VGD38_11555"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY0728699.1"
                     /translation="VGAGADDHLDLPFRNEELLVKVARLVERHRIGQATRESEARYRE
                     LFENANDIIYTHDLKGYFTSLNRSGERITGYSREETMRMNVADVIAPEYLDLAREMIA
                     HKAAEHVSTVYEIDIISKKGRRVRLEVSTRLIFRDGKPIGVQGIARDLTERKYSEEAL
                     RETQAFFNSFMDNSPAVAFMKDHTGRYVYVNKPFERLFGQDLNFLKGRMSFDWLPPAT
                     AAQTHEHDLKILNSGQPEQVVETIPTEDGTPHSWLVFKFPTIDASGNKYVAGVGVDIT
                     ERRRAEEALAQQAQREGMVHRISQAIRCSLDSHEIYKTAVRELGSFLAVDRCSLFMRD
                     DRAKCAMNVAEYHAQGVEPAASEFTLAHLQTLIKALDETGVLPFSDAAHDPRIAELYS
                     NILSKADVKSIMYVAIRVGDDVPAAFALSTTKHLREWTEADIAMAKAVADQTGIAIRQ
                     AELYQKAESTSIREALVNRLTTAIRASLRMPEVLSTATRELGRALAASRVHVFLSVSE
                     ELGSPLEHEYLVANAKSIKPMPIGADHPTGRRLSTSSEPLIIDDALNFEDESFVLRDY
                     VRTHAEKLNVRSQINYPLIVKGQFRGVLSIHQTDRIRRWTEDEVMLVEALAERLSIGI
                     GQAELFEMVARGKTEWETTFDAMSDGIFIFDRSGELKRVNRAGAAMEAVHPRLLLGRK
                     CCDILRTSEEDEACVVEKAIETSRSVTIEITPARLNRPLLVSIEPVLDETSKALAVVC
                     TARDLSELRKVEAVAREHQSLLNNILESARESIYAVDPDGNFKWCNTATLQGLGFQRH
                     DFIGRPLLDMVYEGDRELVREKLAAALTGVPQTYEMRYFSHDGRLRHARVDNSPLVVE
                     GKTTGVLGIARDITEQKEERERAARADKLRALGQLASGVAHDFNNSLAAILGRAQLLR
                     RQVTDAALVRNLDIIQTAAEDAAATVRRIQTFARKSPVKEFELLDVASLLNDAIEITR
                     TRWENEARLRGLEYQVRLEAEEGQNAYGSASELREVFVNLIVNAVDAMPRGGKLFIMC
                     RRNDDRLELKFSDNGMGMPDDVRSKIFEPFFSTKGAHGTGLGVSVSYRIIERHEGSIS
                     VDSQPGSGTTFTIDLPAALPEPSLDDVEMSSDETAPLRILVIDDEAPVRETLAEMLVA
                     VNHRVELAGSGLEAVEKLRQGGFDLVFTDLAMPEMDGWETARLIRKDWPNMRIVLVTG
                     YGPTTAPPSGEEDLVDAIIGKPFDFTQVGSTLNALARQLQPVS"
     gene            complement(3737..4870)
                     /locus_tag="VGD38_11560"
     CDS             complement(3737..4870)
                     /locus_tag="VGD38_11560"
                     /inference="COORDINATES: protein motif:HMM:NF020130.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] synthase III
                     C-terminal domain-containing protein"
                     /protein_id="HEY0728700.1"
                     /translation="MINLLSAATSVPKNVFRTSELVGSLMHKLSPELINTIGALGVDQ
                     RYSVLDNYPEFLSGKPKLATSSTTELGVAATRRCIQEWGGDPNRIGLLVAATNTPDQM
                     LPCLASEIMGKTHGVLSRSLRTVSMQAQGCSVLLKSIEVAQWYLAANPGKLAIVVMAE
                     AHTPYVAPLLRNEYSGYRELVRLRKEQKLDAENFELQRLDTTFVIQSMLFGDGAVALL
                     VGDEEGKPAFGPISHLTNDQPNDMNLLTMVSNSSHPFLKGRPQYFMQPSVPARGAHYA
                     VTTVKNVLQHPDSPVSDIQEVDDCLIHTGSKKILDGVCSQLDLHPDSEKVHGSYQVLQ
                     RYGNLSSASTGFMLAEKGEWSGPAIVVGFGVGFTASAGIMNFN"
BASE COUNT         1112 a         1462 c         1529 g         1078 t
ORIGIN      
        1 gtcggcgccg gcgccgacga ccatctcgat cttcccttcc gtaacgaaga gctgctggtg
       61 aaagtcgcgc ggctggtcga acgtcatcgc atcggccagg cgacccgcga gagtgaagcg
      121 cgttatcgcg agctcttcga aaacgcgaac gacatcatct acacgcacga tctcaaaggc
      181 tacttcacgt cgctcaatcg cagcggcgaa cgaatcaccg gctactcgcg cgaagaaacg
      241 atgcgcatga acgtcgccga cgtgatcgcg cccgagtatc tcgatctcgc ccgcgagatg
      301 atcgcgcaca aagccgccga gcacgtttcg actgtttacg agatcgacat catctcgaaa
      361 aaaggacgcc gcgttcgtct ggaagttagt acgcggctga tcttccgcga tggaaagccg
      421 atcggcgtgc agggcatcgc gcgcgatctg acggaacgaa agtattcgga agaagcgttg
      481 cgtgagacgc aggcgttctt caacagtttc atggacaaca gccccgcagt ggctttcatg
      541 aaagaccaca cgggacgtta cgtctacgtc aacaaacctt tcgaacgctt attcggtcag
      601 gacctcaact ttctcaaagg ccgcatgagt ttcgactggc tgcctcccgc aacagccgcg
      661 caaactcacg agcacgatct gaagattctc aacagcggcc agccggagca ggttgttgaa
      721 accattccga ccgaagacgg cacgccgcac tcgtggctgg ttttcaagtt tccgactatc
      781 gacgcttccg gtaacaagta tgtcgcgggc gtgggcgtcg acatcacgga acgacggcgc
      841 gcggaagagg cgctggccca acaggcgcaa cgcgagggca tggtccatcg catctcgcag
      901 gcgattcgtt gctcgctcga cagtcatgag atttacaaga ccgcggtgcg cgagcttggt
      961 tcgttcctgg ccgtcgatcg ttgttcgctg ttcatgcgag acgatcgcgc gaagtgcgcg
     1021 atgaacgtcg ccgagtatca cgcgcaaggc gtggagcccg ccgcgtcaga atttacgttg
     1081 gcccacctgc agacactcat caaagcgctg gatgaaacag gcgtgttgcc tttttccgac
     1141 gccgctcatg acccgcgaat cgccgaactt tacagcaaca tcctttcaaa agccgacgtg
     1201 aagtcgatca tgtacgtggc gatcagggtc ggcgacgacg tgccggctgc tttcgcgttg
     1261 tcgaccacga aacatctgcg cgagtggacc gaagcagaca tcgcgatggc gaaggccgtc
     1321 gcggaccaga cgggaatcgc cattcgccag gccgagcttt accagaaagc cgagagcact
     1381 tcgatacgtg aagcgctggt gaaccgtttg acgacggcga ttcgcgcatc gttgcgaatg
     1441 ccggaagtgc tcagcacggc cacgcgtgaa ctcggccgcg cactcgctgc gtcgcgagtt
     1501 catgtttttc tttccgtcag cgaagagctc ggctcgccgt tggaacacga atacctcgta
     1561 gcaaacgcga agagcatcaa gccgatgccc atcggcgccg atcatccgac tggccggcgg
     1621 ctgtcgactt cgagcgagcc gctaatcatc gacgatgcgt tgaactttga agacgagtcg
     1681 tttgtgctgc gtgattacgt tcgcacacac gcggagaagc tcaacgttcg ttcgcagatc
     1741 aactacccgc tgatcgtcaa aggacagttt cgcggcgtgt tgagtattca ccaaacggat
     1801 cgcattcgcc gttggaccga agatgaagtg atgctggtcg aggcactcgc cgaacgattg
     1861 tcgatcggta tcggacaggc ggagctgttc gagatggtcg cgcgcggcaa gacggagtgg
     1921 gaaacgacgt ttgacgcgat gtctgacggt attttcattt tcgatcgctc tggcgagctc
     1981 aaacgagtga atcgtgcggg tgcggcgatg gaagccgttc atccgcggtt gctgctcggc
     2041 cgaaagtgtt gcgacatcct ccgcacgagt gaagaagacg aagcctgcgt ggttgaaaag
     2101 gcgatcgaga cgagccgcag tgtgacgatc gagatcacac cggcgcgttt gaatcgtccg
     2161 ttgctggtgt cgatcgagcc ggtgctcgac gaaacgagta aggcgctggc tgtggtttgc
     2221 acggcgcgcg acctttcgga gctgcgcaag gtcgaggcag ttgctcgcga gcaccagtca
     2281 ttgctgaaca acattctcga gagcgcgcgc gaatcgattt acgctgtcga ccctgatggg
     2341 aatttcaaat ggtgcaacac cgcgacgttg caaggtctcg gttttcaacg tcatgatttc
     2401 atcggacggc cgttgctcga catggtttac gaaggcgatc gcgagctcgt gcgtgaaaaa
     2461 ctcgccgctg ctttgaccgg cgtgccgcaa acgtacgaga tgcgctactt ctcgcatgat
     2521 ggccgtttac gtcacgcgcg cgtcgacaac tctccgctcg tagttgaagg caaaactacc
     2581 ggcgtgctgg gcatcgctcg cgacatcacc gagcagaagg aagaacgcga acgtgcggcg
     2641 cgcgccgaca agttgcgcgc gttgggccaa ctcgcgtcgg gcgtcgcgca cgacttcaac
     2701 aactcgctcg ctgcgatact cggccgcgcg caactgctgc gccgccaggt gaccgacgcc
     2761 gcactcgtac gcaatctcga catcattcaa acagccgcgg aagacgcggc cgccactgtc
     2821 cggcgtatcc agacattcgc gcgcaagtcg ccggttaaag aatttgaatt gctcgatgtc
     2881 gccagtcttt tgaacgacgc gatcgagatc acgcgtacgc gttgggaaaa tgaagcacgt
     2941 ttgcgcggtc tcgaatacca ggtgcggctc gaagctgagg aaggccagaa cgcctacggc
     3001 agtgcgtctg agttgcgcga ggttttcgtc aatctgatcg tgaatgccgt cgacgcgatg
     3061 ccgcgtggcg gcaagctgtt catcatgtgc cgccgcaacg acgatcggct agagctcaag
     3121 ttcagcgaca acggcatggg tatgcccgac gacgtgcgct cgaagatctt cgagccgttt
     3181 ttctcgacga aaggcgcgca cggcaccggt ctcggtgtgt cagtcagcta ccgcatcatc
     3241 gaacggcatg agggatcgat cagcgtcgat tcgcaacccg gcagcggcac gactttcacg
     3301 atcgacttgc ccgcggcatt gcccgagcca tcgcttgacg atgttgagat gagctctgat
     3361 gaaactgcgc cgctgcgaat tctcgtgatt gacgacgaag cgccggttag agaaacgctc
     3421 gcggaaatgc tcgtggcggt gaatcaccgg gttgagttag ctggcagtgg tctggaggcc
     3481 gtggagaagt tgcggcaagg cggatttgat cttgtgttca cggatctcgc gatgcccgag
     3541 atggacggct gggagactgc gcgtttgatt cgtaaggact ggcccaacat gcgcatcgtt
     3601 ctcgtgacgg gctatggacc aaccacggcg ccgccaagtg gcgaagagga tctagtcgac
     3661 gcgatcatcg gcaaaccatt cgacttcacg caagtcggct cgaccctcaa cgcactggcg
     3721 cgtcagctcc aaccagttag ttgaaattca taattcccgc actcgcagta aatccaactc
     3781 caaatcctac cacgatcgcc ggacccgacc attcgccttt ttccgcgagc atgaagcccg
     3841 tcgaagcgct ggaaaggttt ccgtagcgtt gcaggacttg gtaagagccg tgcacctttt
     3901 ctgaatccgg gtgcaggtcg agctgcgaac aaacgccgtc gagaatcttc ttgctgccgg
     3961 tgtggatcaa acaatcgtcg acttcctgga tgtcagacac tggcgagtcg ggatgctgca
     4021 gcacgttctt gacggtcgtc actgcgtagt gcgcgccgcg cgcaggcacg ctcggctgca
     4081 tgaaatactg tggccttcct ttcaggaaag gatgcgaact gttgctgacc atcgtcaaca
     4141 ggttcatgtc gttcggttga tcgttggtca ggtgcgagat tggtccaaac gccggctttc
     4201 cttcttcatc gccgacgagc agggccaccg cgccgtcgcc gaagagcatc gactggatca
     4261 caaacgtcgt atccaatctt tggagctcga agttttcggc gtcgagcttc tgctctttcc
     4321 gcaatctcac gagttcgcgg taacccgagt actcgtttcg cagcaacgga gcgacgtaag
     4381 gcgtgtgcgc ttcggccatc accacgatcg cgagcttgcc ggggttcgcc gcgagatacc
     4441 attgggcgac ttcgattgat ttcagcaaca cagaacaacc ctgcgcctgc atgctgactg
     4501 tgcgcaacga acgggaaaga accccgtgtg tcttgcccat gatttctgaa gccaggcaag
     4561 gcagcatttg atccggtgta ttggttgctg ccaccagcag accgatccga ttaggatcgc
     4621 cgccccactc ttgaatgcat cggcgcgtcg ccgcgacgcc gagttcggta gtggaactgg
     4681 ttgctagttt tggtttgccg gaaaggaact cggggtagtt gtcgaggacc gagtaacgtt
     4741 gatcgacgcc gagagcgccg attgtgttga taagctccgg ggagagcttg tgcatcaggc
     4801 tgcccaccaa ctccgatgtc ctgaagacat ttttaggcac cgaagtcgct gctgataaca
     4861 agttgatcat tgtcgtttta ctccaacaag aggggggttg ccgcacccga ccggccttgt
     4921 tcttaaattt tgttcacttt tttggattac aagccctgtg ccgcagaggt cgagttacgg
     4981 cacgtttaag ctaaagtctt tgtttgagac atttacacgt ttgtcgcgga gcaatgcgag
     5041 ggggcgcgat agcaggtctt tttggatacc gaataaacac ccacccgcgc atgattgcta
     5101 ttgctaggat tttcggaatc tcaacgcgac aacgcgctgg tacggcaata tacacatggc
     5161 tagagtgtat tcacacacta a
//
LOCUS       DASWTX010000764         1885 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_269610, whole genome shotgun sequence.
ACCESSION   DASWTX010000764 DASWTX010000000
VERSION     DASWTX010000764.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1885
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269610"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1503
                     /locus_tag="VGD38_11565"
     CDS             <1..1503
                     /locus_tag="VGD38_11565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728701.1"
                     /translation="VPAAPVGYFGVTFSPDGNDLYYVIKANLDQGTLYRIPVLGGTPV
                     KLSERLDGPVSFSPDGKQFVFVRGNYPNANSSALIIANVDGTGERELAIKNFPERFSP
                     IFFTGPSWSPDGKLVAAPVATTGGQSRLLGFSVADGKEQQLWQQTWPFTGRVQWLPDM
                     TGLIVVAGETAAAAQLWFVNPADGSGRRITNDLGTYRSIGMTQDGKTITTVQAQGLVN
                     LWIAPDGDVAKASRLPTGNVSFYSSSGNNVTWTPDGRIVFVSNEGGNPNIWITTPDGS
                     ERKQLTANDAANFSPVVSADGKYIVFSVWRGGTRALWRMQVDGRNLVQLTFGTTDSFP
                     SISPDSRWIIYTAQTGGMPTLWKVSIDGGTPTRVMERNATMSVISPDGKYIAYTYPES
                     ADATAPANRIAVMPFEGGEPIKTFQVNSSGTVLAVIKWANDGKSLFYTVTANNITNIW
                     NQPIDGGPPKQVTEFKEMLMTGFAWSSDGKQLACTRGNLVRDAVLIRDLK"
     gene            1500..>1885
                     /locus_tag="VGD38_11570"
     CDS             1500..>1885
                     /locus_tag="VGD38_11570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728702.1"
                     /translation="MSHTLLTIILICVTVVSVDAQTLRKYDLKPSDLPPPNPAEDAVN
                     PPRVVPRPAGAQLIMPPGFSIETFAEGEFREPRWLALAPNGDVFLSDARAGKIIVLRD
                     ANKDGVAEERFTFVEGMKQPFGMAFW"
BASE COUNT          415 a          520 c          556 g          394 t
ORIGIN      
        1 gttcccgctg ctccggtcgg atatttcggc gtgacgtttt caccggacgg aaacgatctt
       61 tattacgtca tcaaagcgaa cctcgaccag ggaacccttt atcgcattcc ggtcctcggc
      121 ggcacgcccg taaagctcag cgagcggctc gatggaccag tcagcttttc acccgacggt
      181 aaacagtttg tcttcgtgcg cggcaactat cccaacgcca actccagcgc gttgattatc
      241 gccaacgtcg acggcaccgg cgaacgtgag cttgcgataa agaactttcc cgagcgtttc
      301 tcgcccatat tttttactgg cccatcatgg tcgccggacg gaaaactcgt cgcggcgcca
      361 gtcgcgacga cgggcggcca gagtcgtttg cttggttttt cagttgccga cggtaaagaa
      421 cagcagcttt ggcaacagac gtggcccttc acaggccgcg ttcagtggct cccggacatg
      481 accggattga tagtcgtcgc gggagaaact gccgccgccg cacaactctg gtttgtcaat
      541 cctgccgatg gcagcgggcg ccgcatcaca aacgacctcg gcacctatcg ctcgatagga
      601 atgacgcagg acggaaagac aatcacaaca gttcaggcac aaggattagt gaatctatgg
      661 atcgcgccgg acggcgacgt ggcgaaagct tccagactgc cgaccggcaa cgtgagtttt
      721 tattcctcgt cgggaaataa cgtgacgtgg acgcccgacg gaaggatcgt gtttgtttcg
      781 aacgagggcg gtaaccccaa catttggatt acaacgcccg acggcagcga gcggaaacag
      841 ttgactgcaa acgacgcggc taacttctcg cccgttgtct cggccgacgg caagtacata
      901 gtgttcagcg tgtggcgcgg tggaacaaga gctctttggc gcatgcaggt ggacggtcgc
      961 aatcttgtgc agttgacgtt cggcacgacg gattcgttcc cgagtatctc gcctgacagt
     1021 cgctggataa tctacaccgc gcagaccgga ggaatgccga ctctttggaa ggtctcgatt
     1081 gatggcggaa cgccaacgag ggtcatggaa cgcaacgcga cgatgagcgt catctctcca
     1141 gacggcaagt acatcgctta cacgtatcct gaatccgcgg atgcaaccgc gccggcaaac
     1201 cgcatcgctg tgatgccatt cgagggtggc gagccgataa agacgtttca ggtaaattcg
     1261 agtggtacag tattggccgt catcaagtgg gccaacgatg gcaaatcgct tttttataca
     1321 gtgacggcaa acaacatcac gaacatctgg aatcagccga ttgacggtgg tccaccgaaa
     1381 caggttaccg agtttaaaga gatgctgatg acgggcttcg cctggtcgag tgacggaaaa
     1441 cagctcgcgt gtacgcgcgg caatcttgtt cgtgatgcag tgttgattcg ggacctcaaa
     1501 tgagccacac attactaaca atcatcttga tctgcgtgac cgttgtttct gtagatgcgc
     1561 agactctccg aaagtacgac ttaaagccgt ccgatctgcc gccgccgaat ccggccgaag
     1621 acgcggtcaa tccaccgcgc gtggtgccgc gtccggcggg cgcgcagttg atcatgccgc
     1681 cgggtttttc gatcgagacg tttgccgaag gtgagtttcg cgagccgcgg tggttggcgc
     1741 tcgcgccgaa cggcgacgtg tttttgtctg acgcgcgcgc gggcaagatt atcgtgctgc
     1801 gcgacgcgaa caaagacggc gtcgcggaag agcgcttcac tttcgtggag ggaatgaagc
     1861 agccgtttgg catggcgttc tggaa
//
LOCUS       DASWTX010000765         2290 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_139356, whole genome shotgun sequence.
ACCESSION   DASWTX010000765 DASWTX010000000
VERSION     DASWTX010000765.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2290
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139356"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            377..>2290
                     /locus_tag="VGD38_11575"
     CDS             377..>2290
                     /locus_tag="VGD38_11575"
                     /inference="COORDINATES: protein motif:HMM:NF012602.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEY0728703.1"
                     /translation="MTTKHKNETFYPGPSRGRLAAFPPKERWDDWTELDSRAWPRRVE
                     RHYSLVPTTCFNCESACGLLAYIDKVTGEVQKFEGNPEHPGSRGRNCAKGPATLNQVT
                     DPDRILYPMKRAGKRGEGKWERTTWDEALDVLAKRIRTAIVENRRQEIMYHVGRPGED
                     GFTERILAAWGIDGHNSHTNICSSGSREGYQLWMGLDRPSPDHANAKVILLISAHLES
                     GHYFNPHAQRVIDGKANGAKLIVFDTRLSHTATHADYWVAPYPGSETAILLAIANYLI
                     QNELYNRDFVEQWWNWKEVVDGDFADFERELKTLYRDYTFEFAAEESGVDAKVIKEIA
                     ELVATAGTRFSSHNWRSAASGVSGGWSVARALFMLNALLGAVATEGGVYPNAWNKFVP
                     RPIYTPPHPNMWNEVTWPREYPLSMNEMSFLLPHFLKDGRTKLDVYFTRVYNPVWTNP
                     DGFSWIEVLTDPDLIKTYVALTPTWNETAYYADYVLPMGVGSERHDLHSYETHDSQWL
                     GFRQPVMKAARERAGETINDTRDVNPGEVWEENEFWLELTWRIDPDGSLGIRQYAESK
                     KNPGTRLSVDEYYEWIFDHSVPGLPEKAAEEDLTPLQFMRRYGAFEVKDKIGKIYDQT
                     VGPEELDDAREDDL"
BASE COUNT          562 a          609 c          668 g          451 t
ORIGIN      
        1 acaaggagat agaagatgga atcgtcgaag cagttcccgg cgacgaagta atgaacaggc
       61 tacgcgctcg atataaacgc taagaactta tgaaatacac ctttcatcct cacgctgaaa
      121 gggaactaga agaaatagag agtcactaca acgacatact tcacgaactt ggaaatcggt
      181 ttcgagaaga tgttgagatg acagtttccc gaattcttga gtttccaaac gcctggcagc
      241 cactgtcccg agtgttcaga cgttgcaggt tagataggtt tccctacgca ataatttacc
      301 gagtgcggga aaacgagatt cgcgtgttgg cggtggcgca tcagcgtcgc gagcccaatt
      361 actggaagag ccgaagttga ctaccaaaca caagaacgaa accttttatc cggggccgag
      421 tcgggggagg ttggcggcgt ttcccccgaa ggagaggtgg gatgattgga ccgagctcga
      481 ttcgagggct tggcccagga gagtcgagcg gcattactcg ttggtgccga cgacgtgctt
      541 caactgtgag tcggcgtgtg gactgctggc ttatatcgac aaggtcacgg gtgaggtgca
      601 gaagtttgag gggaatccgg agcatccggg ttcgcgtggg aggaattgcg ccaaggggcc
      661 ggcgacgctc aatcaggtta ccgatccgga tcgcattctg tatccgatga aacgcgccgg
      721 taaacgcggc gaaggtaagt gggagcggac gacgtgggac gaggcgttgg atgtactcgc
      781 caaacgcatc cgcaccgcga tcgtcgagaa ccggcggcag gagatcatgt atcacgtcgg
      841 gcggccgggt gaagatggtt ttactgagcg cattctcgcc gcgtggggca tcgacggtca
      901 caactcacac acaaacattt gttcgtcggg cagtcgcgaa ggttaccaac tctggatggg
      961 tctcgatcgg cccagcccgg atcacgcaaa cgcgaaagtc atactgctga tcagtgcgca
     1021 tctcgagtcg ggccattact tcaatccgca cgcgcagcgt gttatcgacg gcaaagcgaa
     1081 cggcgcgaaa ctgatcgtgt tcgacacgag gctttcgcac acggcgacgc acgctgatta
     1141 ctgggtcgcg ccgtatcccg gttcggaaac ggcgatcctg ctcgccatcg caaactattt
     1201 gattcagaac gagctttaca accgtgattt cgtcgagcag tggtggaatt ggaaagaggt
     1261 agtggacgga gattttgcgg attttgaaag agaattaaaa acactttatc gagattacac
     1321 gtttgagttt gccgctgaag agtccggtgt tgacgcgaag gtaatcaaag aaatagctga
     1381 gctggttgct accgcgggga cgcggttttc gagtcacaac tggcgcagcg ccgcgtcggg
     1441 cgtgagcggc ggctggtccg tcgcgcgcgc gctgttcatg ttgaatgcac tgctcggcgc
     1501 agtcgccacc gaaggcggtg tttacccaaa cgcatggaac aaattcgtcc cgcggccgat
     1561 ctacacgcca ccacacccaa acatgtggaa cgaggtcacg tggccgcgcg agtatccgct
     1621 ctcgatgaac gagatgtcgt tcctgctgcc gcacttcctc aaagacggcc gcaccaaact
     1681 cgacgtctat ttcacacgcg tctacaaccc cgtctggacc aaccccgacg gcttctcgtg
     1741 gatcgaagtc ttaaccgatc ccgatctcat aaaaacctac gtcgcgctca cgccaacgtg
     1801 gaacgaaacc gcttactacg ctgattacgt tctgccgatg ggcgtcggct ccgaacgcca
     1861 cgatcttcac tcttacgaaa cacacgattc acagtggctc ggctttcgcc agccggtgat
     1921 gaaagccgca cgcgaacgcg caggcgaaac gatcaacgac acgcgcgacg tcaatcccgg
     1981 cgaggtgtgg gaagaaaacg aattctggct cgaactaacg tggcgcatcg acccagacgg
     2041 atccttgggc attcgccagt acgccgaaag caaaaagaac ccaggcacgc gtctcagcgt
     2101 cgacgagtac tacgaatgga ttttcgatca ttcagttccc ggtctgccgg aaaaagccgc
     2161 ggaagaagat ctgacgccgc ttcagttcat gcgccgttac ggggcttttg aagttaaaga
     2221 caagattggc aagatctacg atcaaacagt cgggccagaa gagctcgacg acgcacgcga
     2281 agacgacctc
//
LOCUS       DASWTX010000766         2184 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_383042, whole genome shotgun sequence.
ACCESSION   DASWTX010000766 DASWTX010000000
VERSION     DASWTX010000766.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2184
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_383042"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2011
                     /locus_tag="VGD38_11580"
     CDS             <1..2011
                     /locus_tag="VGD38_11580"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEY0728704.1"
                     /translation="TGKAAKVDTDNYPDPIRSFDAIWAPDSKWIAYSKNLPSHLRAIF
                     VYSLAEKKSFQVTDGLADSVSPAVDVNGKYLYFMASTNYGPSTGWLEMSSIDRPVRRA
                     IYLVVLSATEPSPLLPETGDEPPAPPREQPPAQTPPVQPAPPAPRTVNVRIDPNGIGQ
                     RILAVNVPVGDYANLAAGAAGSFYYTEPVIPGGATAFRLQRYELRTRAAAPFLEGIRA
                     YSVSADKKKLLYQMAAGGGASWGVVATDRPAKVGDGPINVAQLETRVDPRAEWEQIYR
                     ETWRVQREHFYDPQFHGADWNAIYEKYRPLLAFVRHRADLGYLIATVGGELAVGHSYV
                     TALGDVPTEDPVNVGLLGADFAIENGRYRIKKIYSGENWNPELRAPLNAPGIQVSEGD
                     YVLEVNGRALVTPANIYSLFEGTANRQTLIRVSKTPSADGSKVVTVVPVANEDGLRTR
                     AWIEDNRRLVDKLSNGRLAYVWLPNTTGPGYVAFTRYYYSQQDKEGAVIDERYNQGGQ
                     IADYIVNELDRKLLGYFAQRDGEPTTSPIAGIYGPKVMIINESAGSGGDALPYYFRLR
                     KIGPLIGTRTWGALVGTLGIPATIDGGGITAPTLAFYDVSGRWAVENEGVAPDIEVEY
                     TPAEVLKGRDPQLERAVQEAMKLLEQNPVKRVPRPAPINRVTSSK"
BASE COUNT          461 a          648 c          655 g          420 t
ORIGIN      
        1 gacgggcaaa gctgcaaagg tcgacactga caactatccc gatccgattc gttcgttcga
       61 cgccatctgg gcgcctgatt cgaagtggat tgcgtactcc aaaaaccttc ccagccacct
      121 gcgcgcgatc tttgtctact cgctcgccga gaagaagtcg tttcaggtta cggacggatt
      181 agccgattcg gtctcgcctg cggtcgacgt caacggcaag tatctctact tcatggcgag
      241 cacgaactat ggaccaagca ccggctggct cgagatgagc tcgatcgatc gtccagtgcg
      301 ccgcgcgatc tatctcgtgg ttttgagtgc gaccgagccg tcaccgctct tgcctgaaac
      361 gggtgacgaa ccaccagcgc caccgcgcga acagccgcct gcgcaaacgc cgccggttca
      421 acccgctccg ccggcgccgc gaacggtcaa cgttcgtatc gatccgaacg gcatcggtca
      481 gcgaatactc gcggtgaatg ttccggttgg tgactacgcg aatctcgccg ccggcgcggc
      541 gggtagtttc tattacacgg agccggtcat cccgggcggc gccacggcct ttcgcttgca
      601 acgttacgaa ctgcggacac gcgcggcggc gccgtttctc gaaggcattc gcgcgtactc
      661 tgtttccgca gacaagaaga agctgcttta ccagatggcc gcgggcggcg gcgcatcgtg
      721 gggcgtcgtc gcaaccgatc gtccagcaaa ggttggcgat ggaccaatca acgtggccca
      781 actcgaaacg cgtgtcgatc cgcgcgcgga gtgggagcag atctatcgcg aaacctggcg
      841 cgttcaacgc gaacactttt acgaccccca atttcacggc gccgattgga acgcgatcta
      901 cgagaagtat cgcccgctgc tcgcgtttgt tcgacatcgc gctgacctcg gttacttgat
      961 cgcgactgtc ggcggtgaat tggcggtggg ccattcgtac gtgacggcgc ttggcgatgt
     1021 gccgactgaa gatccggtta acgtcggctt gctgggcgcg gatttcgcga tcgaaaacgg
     1081 acgctaccgg atcaagaaaa tctatagcgg cgagaactgg aaccccgaac tgcgcgcgcc
     1141 gctaaacgcg cccggaattc aagtctctga aggcgattac gtgttggagg taaacggccg
     1201 cgcgctcgtg acgccggcga atatctacag cctcttcgaa ggcacagcca atcgtcagac
     1261 gttgattcgt gtcagcaaaa cgccgtcagc cgacggttca aaggtcgtaa ccgtcgttcc
     1321 ggttgcgaat gaagacggac tgcgcacgcg cgcgtggatc gaagacaatc gacgcctcgt
     1381 cgacaagctt tccaacggcc gtctcgctta cgtttggctg ccgaacacca ccgggccggg
     1441 ctacgtcgct ttcactcgtt actactattc gcaacaggac aaagaaggcg cggtcatcga
     1501 cgagcgctac aaccagggcg gacagatcgc cgactacatc gtcaacgagt tggaccgcaa
     1561 gctgctcggt tacttcgcgc aacgtgacgg cgagccgacg acgtcgccga tcgcgggcat
     1621 ctatggtcca aaggtcatga tcatcaacga gtctgccggt tcgggtggtg acgcgcttcc
     1681 ctactacttc cgcttgcgca agattggtcc attgatcggc acgcgcacgt ggggcgcgct
     1741 tgtcggcacg ctcggcatac cggcgacgat cgacggcggc ggcatcaccg cgccgacact
     1801 cgcgttctac gacgtgtccg gccgctgggc cgtggagaac gaaggcgtcg caccggatat
     1861 cgaagtcgag tacacgccag ctgaagtatt aaaaggacgc gatccgcaac tcgagcgcgc
     1921 ggttcaggaa gcaatgaaat tattggaaca gaacccggtg aagcgagtgc cacgaccagc
     1981 cccgatcaat cgcgtgacta gctcaaagtg agtgcacaaa catgcgggtt ggttctgagt
     2041 tcaagcttta gcttgctgca ccatgcagcc taaaggctga actcaaaaca gcgaaccagt
     2101 tgtcggagga caatgatgaa aagggttgta agactggcat tagtttggct ggccgttctg
     2161 gtgcaggttg ccgcggttca ggcg
//
LOCUS       DASWTX010000767         2402 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_55064, whole genome shotgun sequence.
ACCESSION   DASWTX010000767 DASWTX010000000
VERSION     DASWTX010000767.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2402)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2402)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2402
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55064"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1782
                     /locus_tag="VGD38_11585"
     CDS             <1..1782
                     /locus_tag="VGD38_11585"
                     /inference="COORDINATES: protein motif:HMM:NF015862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-binding protein"
                     /protein_id="HEY0728705.1"
                     /translation="YQLTVEHVGAVPNHPWVSSVIIRLPQNLPAAGDVLVRIKYHDLA
                     SNRVRVGIGQIGGGPTDDIGAIPTPGLAFPIVPPAAITATNLTSTDVQTILQQAASAA
                     ASLGKAVTIVVTDREANIIGLFAMTGAPATTTVRSVGTAGQGLEGIVAPASEAATAKA
                     ATAAFFSTTGNAFSTRTAGFIIQEHFPPGISFRPGGPLYGVQFSSLPCSDIKKPSARL
                     GLSADPGGLPIYKDGLPAGGIGIEGDGLYTVDRNPIDNDQPFEEVIAASAIRGFEAPS
                     GIRGDTILVDGIRLPCTNITNPLVPGTVASIVGSIVSPPPASEFVPQMIGGVAGEVSP
                     RFFPFIAGTAPVANGLTAADVQTSISRAALQSNITRAAIRQPLGSTARVTIAVVDAAG
                     VVLGVFRQQDAPVFGFDVAVQKARSAAFFSSAHAATALRTAGLGSYVDRAIADGVRLD
                     GSIAFSDRAIGFLHRPFFPDGIDNTAAGPFSTAIGNWSPFNVGLQLDIVRANFLAALS
                     GPVASCTSIPGLANGAQIFAGSVPLYKNGVLVGAIGISGDGIDQDDLIAAAGANGFSP
                     PVNVRSDQFFVRGVRLPFLKFPRSPNL"
     gene            1786..>2402
                     /locus_tag="VGD38_11590"
     CDS             1786..>2402
                     /locus_tag="VGD38_11590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728706.1"
                     /translation="MTRLLFVLILLALTLPIGISHSQTQDTTTRQSGVVRLRARVKLS
                     DSAPLRGLARKRFFLIPGSLEQNRALVEAIERQPLVTRDCYYTKNGASPALIAWLKEA
                     DCESVYCRDVEQDFIAGPKAVPEFASAFAASEKEFGNAATARKWLTTNVPANLRDGFY
                     RDRKGVIDTLLKQAGANVQSVMTDRNGTAFFTDLAPGTYVITNLVP"
BASE COUNT          445 a          738 c          722 g          497 t
ORIGIN      
        1 tatcagctaa ccgttgaaca cgtgggcgcc gtccccaacc atccgtgggt ttcatccgtc
       61 atcatccgcc tcccccaaaa ccttccggca gcgggcgacg tgctggtgcg gatcaaatac
      121 cacgacctcg ccagcaatcg cgtgcgcgtc ggtatcggac aaatcggcgg tggtccaact
      181 gacgacatcg gcgcgatccc gacgcccggt ctggcgtttc cgatcgttcc gcctgcggcg
      241 atcacggcta ccaacttaac ttcaaccgac gtgcaaacga tcctgcagca ggccgcttca
      301 gccgcagcgt ctctcggcaa agcggtaacg atcgtcgtca ccgatcgcga ggcaaacatc
      361 atcggccttt tcgcgatgac gggcgcgcct gcgacgacga cggttcgcag cgtcggcacc
      421 gcaggccagg ggctcgaagg catcgtcgca cccgcttcag aagcagcgac ggcaaaggcc
      481 gcaaccgccg cgttcttcag cacgacgggg aacgccttct cgacgcgcac ggcgggcttc
      541 atcatccagg aacattttcc gcccggcatc agttttcgcc cgggtggacc actttacggc
      601 gtgcagttct cttctctgcc gtgcagcgac atcaagaagc cgtcggcgcg tcttggactt
      661 tctgccgacc cgggtgggtt gccgatttac aaagacggac ttccggccgg cggcatcggt
      721 atcgaaggcg acgggctgta cacggtcgat cgcaatccaa tcgacaacga tcaacctttt
      781 gaagaagtga tcgccgcgtc ggcgattcgc ggctttgaag caccgtccgg gattcgcggc
      841 gacacgatac tcgtcgacgg catccggctt ccgtgtacaa acatcacgaa tccactcgtg
      901 ccgggcacgg ttgcgagcat cgtgggctcg atcgtttcac cgcctccggc gtcggagttt
      961 gtgccgcaga tgatcggcgg cgttgcgggt gaagtcagtc cgcgattctt cccgtttatc
     1021 gcgggcacgg cgcccgtcgc gaatggattg accgccgcgg acgtgcagac gagcatctcg
     1081 cgcgcggcgc tccagtcaaa catcacgcgc gccgcgatcc ggcaaccgct cggcagcacc
     1141 gcgcgtgtga cgatcgccgt cgtcgatgcg gcaggtgtcg tgctcggtgt gtttcgccaa
     1201 caggatgcgc cggtgtttgg gtttgacgtg gcagtgcaaa aggctcgcag cgccgctttc
     1261 ttttcgagcg cccacgccgc gactgcgtta cgaaccgcgg gcttggggtc ttacgtcgat
     1321 cgtgcgatcg cggatggtgt gcggctcgat ggttcgatcg cctttagcga tcgcgcgatc
     1381 ggttttctgc accggccgtt tttcccggac ggcattgata acactgcggc tggaccattc
     1441 agcacggcga tcggaaactg gagcccgttt aatgtcgggc tgcaattgga tattgtgcgc
     1501 gcgaactttc ttgctgcatt gagtggacca gtcgcttcgt gcacttcgat acccggtttg
     1561 gcgaatggcg ctcagatctt tgcgggcagt gtgccgcttt ataaaaacgg cgtgcttgtg
     1621 ggcgcgatcg ggatcagcgg cgacgggatc gatcaggacg acttgatcgc cgcggcaggc
     1681 gcgaacggtt tttcaccgcc ggttaatgtt cgttcggatc agtttttcgt gcgcggtgtg
     1741 cgtctgccgt ttttgaagtt tcctcgcagt ccgaatctgt aaacgatgac tcgcttattg
     1801 ttcgtgctga ttctgttggc gttgacactg ccaatcggaa ttagccactc acaaacgcag
     1861 gacacaacga cgcggcaatc gggcgtggtg cgtctgcgcg cgcgagtgaa gctgagcgac
     1921 tcagcgcctt tgcggggtct cgcacgcaaa cgattcttct tgattcccgg ctcgctcgaa
     1981 cagaaccgcg cgctcgtgga agcgatcgaa cgccagccgc tcgtcacgcg cgattgctac
     2041 tacacgaaga acggcgcgag tcccgcgttg attgcatggc tgaaggaagc cgactgcgaa
     2101 tcggtttact gccgcgacgt cgaacaggat ttcatcgcgg gtcccaaagc cgtgcccgaa
     2161 tttgcatccg cgttcgccgc gagcgaaaag gaattcggca acgccgcgac cgcacgcaaa
     2221 tggctgacga caaacgtgcc tgcaaacttg cgcgacggtt tctatcgcga tcgcaaaggc
     2281 gtgatcgaca cgttgctcaa acaagcaggc gcgaacgttc aatcggtaat gaccgatcgc
     2341 aacggcactg cctttttcac cgatctcgcg ccgggcactt acgtcatcac aaacttagtt
     2401 cc
//
LOCUS       DASWTX010000768         2218 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_99124, whole genome shotgun sequence.
ACCESSION   DASWTX010000768 DASWTX010000000
VERSION     DASWTX010000768.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2218
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99124"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2104)
                     /locus_tag="VGD38_11595"
     CDS             complement(<1..2104)
                     /locus_tag="VGD38_11595"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0728707.1"
                     /translation="MQTILQDLRYAFRMMRRRPGFTAVIVITLALGIGANTAIFSVVN
                     AVLLRPLPFPNPEQIVILRDDLTGRQLTDVGMSVDELKDLQERAGVFDQVSALWAGDA
                     NLTGSDRPERIELLAVSPNYFSLLGVNAQLGRVFGPQDQAQGFAESVVISDGLWRRLF
                     GSDPNVLGKRISADSDVYTIVGVMPPGFRHPARTLRNEVDVWATAGFAAKPFETPVRA
                     QRILPGAIGRLKPGVTVEQAQARVNDLVSILRTEFPKEYPPESGWTIRVLPVRELLVG
                     KVQSTLLVLLAAGGLVLLIGCANIANLLLARSSARHREMAIRLSLGAGRRRLVVQLLI
                     ESLVLALLGGIVALIVMTALMSVLLGFVPADVPRLNEVSVNASVLGFVFLISTLTGLL
                     FGLIPALQASRPDVVVNLKEGALGGGSGARHHRFRSALVVVEFALSLVVMIGAGLLIR
                     SFGRLLEVNPGFNPSKVLMARIWLPIPNNPDLDPYRPPDKRVAFVKEILQRTSALPGV
                     QHAAVGSGNGVPLMGPHNNAQFVVEDQPALDTSRPSAQVSTVSPDYFRVLDTPLLRGR
                     FFQPSDDLQAPRVVLIDDALARRWFPDQDPVGKNIKFGKRESTARWLTVAGVVGNIKT
                     DGFEKPDQPHAYLPILQSPGYGMAIYLRTNVDPASLTNQLRQQVQAVDPNLPVFGERT
                     LEDVVSASLAQRRFAMQVV"
BASE COUNT          515 a          673 c          628 g          402 t
ORIGIN      
        1 tcaccacctg catcgcgaaa cggcgttgcg ctaacgaagc cgagaccaca tcctcgagcg
       61 ttcgctcacc gaaaacagga agattcggat cgacagcctg cacttgttgt cgcaattggt
      121 tcgtcaaact cgcagggtca acgttggttc gcaggtagat cgccatgccg taccccgggc
      181 tctgaagaat gggcaaataa gcgtgaggct gatcgggttt ttcgaagccg tcagtcttga
      241 tgtttccgac cacacccgcg accgtcagcc accgcgctgt cgactcgcgt ttcccaaact
      301 tgatgttttt gccgaccggg tcttgatcgg gaaaccatct gcgcgccagc gcgtcgtcga
      361 tcaacaccac tcgcggcgcc tgaagatcgt cactgggctg gaaaaatcgg ccgcgcaaca
      421 acggcgtgtc gagaacgcga aagtaatccg gactgacagt cgacacctgt gcgctcggac
      481 gcgacgtgtc gagcgcgggt tgatcctcga cgacaaattg agcgttgttg tgtgggccca
      541 tcagcggaac accgttaccg ctgccaaccg ccgcgtgctg cacaccagga agcgcgctcg
      601 tgcgctgcag aatttccttc acaaaagcca cgcgtttgtc cggcggccgg taaggatcga
      661 gatcgggatt gttaggaatc ggcagccaga tgcgggccat caaaaccttg ctcgggttga
      721 agccgggatt gacttccaac aaccgtccaa agctgcggat cagcaagcct gcgccgatca
      781 tcaccaccag tgataacgcg aactcgacga ccacgagtgc gctccggaaa cgatgatgac
      841 gcgcgcccga gccgccgccc agcgctcctt ctttcaggtt caccaccaca tcgggacgcg
      901 acgcttgcag cgcgggtatg aggccgaaga gcaaacccgt caaagtggag atgagaaaca
      961 cgaaacccag cacgcttgcg tttacactca cctcgttgag acgcggaaca tcggccggca
     1021 cgaatccgag caacacgctc atcaacgcag tcataacgat aagcgccacg atcccgccga
     1081 gaagagccag taccaggctc tcgatgagaa gttggaccac cagtcggcgg cggccggcgc
     1141 cgagagacag gcgaatggcc atttcgcgat ggcgggccga agagcgcgcg agcaacagat
     1201 tggcaatgtt ggcgcagccg atcagcagga ccaatccacc ggcagctaac agcaccagaa
     1261 gagttgattg cactttcccg accagcagtt cgcgcaccgg cagcacgcgg atggtccaac
     1321 ccgattccgg cggatactct ttcggaaact ccgtgcgcag gattgatacc aggtcgttaa
     1381 ctctcgcttg tgcttgctcg acagtcacgc ccggtttcaa gcggcctatt gcgcccggca
     1441 aaatgcgttg tgcccgcacc ggcgtctcaa acggtttcgc cgcgaaacct gccgtggccc
     1501 acacgtccac ttcgttgcgc agcgtgcgcg ccggatgtcg aaagcccgga ggcatcacgc
     1561 cgacgatggt atagacgtcg ctatcggcgg agattctttt acccaagaca ttcggatcag
     1621 agccaaacag acgacgccac aatccgtcgc tgatcacgac cgactctgca aacccctgtg
     1681 cctggtcctg tggtccaaag acgcggccga gttgcgcgtt cacgccgagc aaagaaaaat
     1741 aattaggact caccgcgagt aactcgatgc gctcgggccg atccgatccg gtcaggttcg
     1801 catcgccggc ccagagtgcc gacacctgat cgaaaacacc ggcgcgttcc tgaagatctt
     1861 tcagttcatc aacggacata ccgacgtcgg taagctgacg tcccgtcagg tcatcacgca
     1921 ggatcacgat ctgttcgggg ttcggaaaag gcaacggtct gagaagcacg gcattcacga
     1981 cgctgaagat cgcggtgttg gcgccgatac ccagtgcgag agtgatgacg ataacagccg
     2041 taaaacccgg cctccgtcgc atcatgcgaa aggcgtaacg caggtcctgc aggatggttt
     2101 gcattttctt ttcctaaacc atgagactag gcatagatta atactgccaa gaagtgggca
     2161 cgtcaatagt gccatcccgc gcatgcaaat tggagtacgt gaggagcgaa tcggtctc
//
LOCUS       DASWTX010000769         2402 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_247781, whole genome shotgun sequence.
ACCESSION   DASWTX010000769 DASWTX010000000
VERSION     DASWTX010000769.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2402)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2402)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2402
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247781"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            49..>2402
                     /locus_tag="VGD38_11600"
     CDS             49..>2402
                     /locus_tag="VGD38_11600"
                     /EC_number="2.2.1.2"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF007080.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional transaldolase/phosoglucose
                     isomerase"
                     /protein_id="HEY0728708.1"
                     /translation="MSNLLVEVMKLGQSIWYDNIRRAMLVSGDLKMKIEQDDLRGVTS
                     NPTIFEKAITGSTDYDEQMRSLINAGKSVKEIYEALVIDDIGRAADILKPVYDETDGV
                     DGYISLEVNPRLAYDTKGTIEEADRLFHTLGRKNVMIKIPAAQEGLPAIEEAIYRGIN
                     VNVTMIFSIENYEQVANAFIKGLERRAAEGKTVDHIASVASFFVSRVDTMIDADLEYR
                     ARHSPAEEKAALENLCGKAAIAIAKLAYQRFKEIFHGERFATLKAKGAQVQRPLWAST
                     GTKNPKYSDVLYVDNLIGPDTVNTVPPATYTAFRDHGKVALTLEQGLNECRDTISKLA
                     ELGIDMKEVTAKLQSDGLASFVGSFDTLVESIEAKRDALVSGIHQRLTASLGKYDDAV
                     STAIKEADKGDVIRRIWRKDASLWKEDPAHQKIIKNALGWLTVPDQMIGVEDDLIAFA
                     DRIRGVREFKHLMLCGMGGSSLCPEVLRQTFGHQEGYPELLVLDSTDPDAFCDIADQI
                     DITKCLFIISSKSGTTTEPLVFYKYWYDQVGKRKENPGECFIAITDPGTLMEQMATED
                     KFKRIFLNPPDIGGRYSALSYFGMVPAALMGLDIKKLLDRSERIVHSCASVVPAADNP
                     GARLGAILGECARAGRDKLTIVADPKISSLGLWIEQLIAESTGKEGKGIGPVAGETLG
                     PPSVYGDDRLFVSIAVGKLDGETDVKLKALEAAGHPVVYRTLTDLYDLGEEFFLWEIA
                     TAFAGYRLGINPFDQPNVQESKDATKELLEKFANDGKLDEQPVLV"
BASE COUNT          588 a          621 c          672 g          521 t
ORIGIN      
        1 atcccacggg cacggctaaa ttcgtccccg aattaaagga gcgagcctat gagcaaccta
       61 cttgttgaag taatgaagct aggccagtca atctggtatg acaatatacg ccgcgcgatg
      121 cttgtcagcg gtgacctgaa aatgaagatc gaacaggacg atctacgggg cgtaacatca
      181 aatcctacta tctttgagaa ggcgatcacc ggttcaactg actatgacga gcagatgcgg
      241 tctctgatca acgccggcaa gagcgtcaaa gaaatctacg aagccctggt catcgacgac
      301 attggtcgcg cagcggacat cctaaaacct gtttacgatg agaccgacgg tgtcgatggt
      361 tacataagtc tcgaagtgaa tccgcgtctc gcgtatgaca cgaagggcac aattgaagag
      421 gctgaccgcc tgttccatac gctgggccgg aagaatgtga tgatcaaaat tccggctgcc
      481 caggaagggc taccggcgat tgaagaagcg atctaccgcg gcattaacgt gaacgtcacg
      541 atgatcttct cgattgaaaa ctacgagcag gttgccaatg cttttatcaa gggactggaa
      601 aggcgtgctg ctgaaggcaa aacagtcgat cacatcgctt cggtagccag cttttttgtc
      661 tcgcgagtcg acacgatgat cgacgctgac ctcgagtaca gggcgcgtca cagcccggcg
      721 gaggagaagg ccgctctcga aaacctttgc ggcaaagcag cgatcgccat cgccaagctt
      781 gcttatcagc gatttaaaga aatctttcat ggggagagat ttgccactct gaaggctaaa
      841 ggcgcacagg tgcaacgacc gctctgggcc tcgaccggaa ccaaaaatcc aaaatattcg
      901 gatgtcttat acgtcgacaa cttgatcggc ccggacacgg ttaatactgt tccgccggct
      961 acctacacag ccttccgcga tcacggcaaa gtggcgctaa cgcttgagca agggcttaac
     1021 gagtgccgtg acacaatctc aaaactcgcc gaactgggaa ttgatatgaa ggaagtgact
     1081 gcgaaactcc agtccgatgg gctggcttct ttcgtcggtt cattcgatac cctggtcgag
     1141 tccattgagg caaagcgtga cgcgcttgtt tccgggatcc atcaacggtt aaccgcttcg
     1201 cttggaaaat atgacgatgc ggtcagcacg gcgatcaagg aagctgacaa aggcgatgtc
     1261 attcgccgta tttggcgcaa ggacgcatcc ctttggaaag aagacccggc gcatcaaaaa
     1321 atcatcaaga atgcgctcgg ttggctcacg gtgccggacc agatgatcgg cgtcgaagat
     1381 gatctgattg cgtttgccga tcgcattcgc ggcgtgcgag agttcaaaca cctcatgctc
     1441 tgcggcatgg gcggctcctc actctgcccg gaagtcctgc gtcagacatt cggccatcaa
     1501 gaaggctatc ccgagctatt ggttcttgac tcgactgatc cggatgcctt ctgcgacatc
     1561 gcggatcaga tcgacatcac aaagtgtctt ttcatcatct cgtcgaaatc gggaaccacg
     1621 accgagccgc tggttttcta caaatactgg tacgaccagg tcggcaagcg taaggagaat
     1681 cccggcgaat gcttcatagc gatcactgat ccggggacct tgatggagca aatggccacg
     1741 gaggataagt tcaaacgaat ctttctgaat ccgcccgaca tcggcgggcg ctattcagcg
     1801 ctttcctatt ttggtatggt gccggccgct cttatgggac tcgacattaa gaagctgttg
     1861 gatcgttcgg aaagaatcgt gcattcttgc gcttcggtcg ttccggcggc cgataacccg
     1921 ggtgcgcggc tgggcgcgat tctcggcgag tgtgctcgag cggggcgcga taaacttacc
     1981 attgtcgccg acccaaagat ttcatctctg ggtctctgga ttgaacagtt gattgcggag
     2041 agcaccggca aggaaggcaa aggaattggt cccgtggcgg gtgaaacctt ggggccgcct
     2101 tcagtctacg gcgacgacag gctgtttgtc tcaatcgccg tcggcaaact cgatggtgaa
     2161 accgacgtaa aactaaaggc gttggaagcc gcgggccatc cggtcgttta ccgcacgctg
     2221 acggatctct acgatcttgg cgaagagttt ttcctatggg agattgcgac agcgtttgcc
     2281 ggctaccgcc tcggcatcaa tcctttcgat caaccgaacg tgcaagagtc gaaggatgcc
     2341 accaaagagc tgctcgagaa gtttgccaat gatggcaagt tggatgagca gccggtgttg
     2401 gt
//
LOCUS       DASWTX010000770         2587 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_361883, whole genome shotgun sequence.
ACCESSION   DASWTX010000770 DASWTX010000000
VERSION     DASWTX010000770.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2587
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_361883"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            33..1154
                     /locus_tag="VGD38_11605"
     CDS             33..1154
                     /locus_tag="VGD38_11605"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY0728709.1"
                     /translation="MSNKAVQVVQLLRSSKREKRLGTVILFITSRCNAFCQTCFYHEE
                     LNQPGDLTFAQLEKISQTMPPITDLWLSGGEPTLRRDISDVIDQFVHNNGVERVIIPT
                     NGLIKSRVFDIVDSALSKHPALDLYLNIALDGYGETHDRIRGVPGNWTKTLDCIEFLY
                     PLKDKYTDRFRLNVNTVVCAENYTEIETLAEFMWQNYKLDGQYFNIIRGETLVGEQIK
                     QVPPEVLPAMYAKVAKLTKRYGDRMFADDEKSKRFVKNVAYVGTITTHYRTQHANFAQ
                     PTPWAFPCTAGQTTAVIDYNGDVRACELREKFATLADFDYDFGALWSAQARTEELTKI
                     DGGKACWCTHVCFIHDSMRHSRRALLYEVPKNFLTRETW"
     gene            1155..1361
                     /locus_tag="VGD38_11610"
     CDS             1155..1361
                     /locus_tag="VGD38_11610"
                     /inference="COORDINATES: protein motif:HMM:NF021073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HEY0728710.1"
                     /translation="MADKDENRKSGFAYAAAVTLFAAVASFCGLGYLLDRWLGTEPWL
                     LVGGIVLGSALGLFEFVRLSSKTY"
     gene            1384..1785
                     /locus_tag="VGD38_11615"
     CDS             1384..1785
                     /locus_tag="VGD38_11615"
                     /inference="COORDINATES: protein motif:HMM:NF015834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit I"
                     /protein_id="HEY0728711.1"
                     /translation="MADSQGNAINLRIFRTMAIATGLGVAVSALIGPWRVTTGLLLGG
                     LLALFNHRWLKNSAAAAIRLSTTGGTSHFNLAQFLLRYLVIAAVIFATVTLDLVNLPA
                     VLAGLCSFVVAMMVEASREFYFAIIEREEIS"
     gene            1785..>2587
                     /gene="atpB"
                     /locus_tag="VGD38_11620"
     CDS             1785..>2587
                     /gene="atpB"
                     /locus_tag="VGD38_11620"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF012347.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000276 - mitochondrial
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_component: GO:0045264 - plasma membrane
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEY0728712.1"
                     /translation="MFWLSDAPAAAEHAEETTEHAAEAAHHSPIIVELVNHYFGESVH
                     AFQIKHTKPWWDWFLGKFGSSAESAFGPYTVENAIPWYTVMFFIACILSVVIIWIFKG
                     KLSESEPGHGQQTLELSVLAVRNMLADIIGPHGLKYFPVVMTFAVLILVSNLMGLFPL
                     FMSPTAATSVTFALGLSSFLYYNYIGINENGIFNHLKHLAGPIWWIAPLIFPIELISN
                     LIRPFSLGIRLFGNLFADEKVLETVANLAPPWSQFLVPLPLMALSVFVAV"
BASE COUNT          541 a          766 c          683 g          597 t
ORIGIN      
        1 actgaagctg tcattatctc ccgcgactcc tgatgagcaa caaagcggtc caagttgtgc
       61 agttgttgcg ttcgtcgaaa cgcgagaagc gtctcggcac ggtcattctg tttatcacgt
      121 cgcgttgcaa cgccttctgc cagacatgtt tctatcacga agagttgaac cagcccggcg
      181 acctgacctt cgcgcaactc gaaaagatct cgcaaacaat gccgccgatc actgacctgt
      241 ggctgtccgg tggcgagccg acgctgcgcc gagatatttc tgatgttatc gatcagttcg
      301 ttcataacaa cggtgtggag cgggtcatta tccccaccaa cggtttaata aaatcccgag
      361 tctttgacat cgtagacagc gccctttcaa aacatcccgc gctcgatctc tacctgaaca
      421 tcgcgctcga cggctacggc gaaacacacg atcgcatccg cggcgtgccg ggcaactgga
      481 ccaaaacact cgactgcatc gagtttctct acccgctgaa agacaagtac accgatcgct
      541 tccggttgaa cgtcaacacc gtcgtctgcg ccgagaacta caccgagatc gaaacgctcg
      601 ccgagttcat gtggcagaac tacaaactcg acggccagta cttcaacatc atccgcggcg
      661 aaacactcgt cggcgaacag atcaaacaag tgccgccgga agtgttgccc gcgatgtacg
      721 ccaaagtcgc caagctcacg aaacgctacg gcgatcgcat gttcgcggac gacgagaaga
      781 gcaaacgttt cgtcaaaaac gtcgcctacg tcggcacaat cacgacccac tatcgcaccc
      841 aacacgcaaa cttcgcacag ccgaccccgt gggcctttcc gtgcacagca ggccaaacca
      901 cggccgtgat cgattacaac ggcgacgtcc gcgcctgcga actgcgcgag aagttcgcca
      961 cgctcgccga cttcgattac gacttcggcg ccctctggtc cgcgcaagca cgtaccgaag
     1021 agttaacgaa aatcgacggc ggtaaagcct gctggtgtac gcacgtctgt tttattcacg
     1081 attccatgcg ccactcacgc cgcgctttgc tttacgaagt ccccaaaaac ttcctcacgc
     1141 gcgagacgtg gtaaatggcg gacaaggacg aaaatcgaaa aagcgggttc gcctacgccg
     1201 ccgctgtcac cctcttcgcc gccgtcgcct ccttctgcgg cctcggctac ctgctggatc
     1261 gctggctcgg caccgagccg tggctactcg ttggcggcat cgtcctcggc tccgcgctgg
     1321 gactattcga gtttgtgcgt ttgagttcaa agacgtatta aattaaaatc accggcttcg
     1381 ctcatggcgg attctcaagg taacgctata aatctgagga ttttccggac gatggctatt
     1441 gccaccgggc tgggtgtggc cgtgtcggcg ctgattggcc catggcgcgt gacgacgggg
     1501 ctgctcctcg gcgggttgct ggcgcttttc aatcatcgct ggttgaagaa ttcggccgcc
     1561 gcggcgatcc ggctttcaac caccggcggc acgtcgcact tcaatctcgc gcagtttttg
     1621 ttgcgctatc tcgttatcgc ggcagtcatt tttgcgaccg tcacgctgga ccttgttaat
     1681 ttgccggcgg tgctggcggg cctgtgcagt ttcgtggtgg ccatgatggt cgaagcttca
     1741 agagagtttt atttcgcaat tatcgagcga gaggaaatta gttgatgttc tggttgtcgg
     1801 acgcacccgc tgcggcagag cacgcggaag aaacgacgga gcacgcggcg gaagccgcac
     1861 atcattcgcc tatcattgtc gagcttgtca atcactactt cggtgaatct gtacacgcat
     1921 tccagatcaa acacaccaaa ccgtggtggg actggtttct cggcaagttc ggttcgagtg
     1981 ctgaatctgc ttttggcccc tacacggtcg agaacgcgat cccgtggtac acggtgatgt
     2041 tcttcatcgc gtgtattttg agcgtggtca tcatctggat tttcaagggc aagttatccg
     2101 aatcagaacc gggtcacggc cagcagacgc tcgagctcag cgtcctcgcg gtgcgcaaca
     2161 tgctcgcgga catcattgga ccacacggtt tgaagtattt cccggtggtg atgacgtttg
     2221 ccgtgctcat ccttgtttca aacctgatgg gactgtttcc gttgttcatg agtccgaccg
     2281 cagcgaccag cgtcacgttc gcactcgggt tgagttcgtt tctttactac aactacatcg
     2341 gcatcaatga gaacggcatc ttcaatcact tgaaacacct ggccggccca atctggtgga
     2401 tcgcgccgct catctttccg atcgagttga tcagtaattt gattcgcccg ttttcactcg
     2461 gcatccgtct cttcggcaac ctgtttgccg acgaaaaagt gctggagacc gtcgccaatc
     2521 tcgctccgcc ctggtctcag tttctcgtgc cgctaccgct gatggcgctg agtgttttcg
     2581 tggctgt
//
LOCUS       DASWTX010000771         3520 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_76279, whole genome shotgun sequence.
ACCESSION   DASWTX010000771 DASWTX010000000
VERSION     DASWTX010000771.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3520
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76279"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2603)
                     /locus_tag="VGD38_11625"
     CDS             complement(<1..2603)
                     /locus_tag="VGD38_11625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728713.1"
                     /translation="MNPNYRVRGELTGPSLTAPLTLEAPIGQPLNIPPLSNAGDHLIR
                     NLRVVDLSTPEQPVVTSVTPDSCGIVVIERLLVSQVQVQQLSYDQIVQAGINITGDSY
                     RAFNFVLGIATSSTAQTINIPVAFPPVGVTDPRPVIGTPSVSGPGIDVPSVYPIMLQA
                     EGPDGEPQGLPQLPGEEPVKIPGVIVFPGRVGFLHQFFEAIVIVSNGAPNGAPLVLRG
                     LHAKALLPNAGTPGDTADDPLRIAETQVGGRVSELDLHGLGADNKYGTADDTTSFGPG
                     EAGQASFLLEGLQEGLHTVNFDLEAMLEGLPSGPVKVRGEVTGAVLVRDASFAVTFTH
                     PNVVREGNDYDLGMTIYNSGQTDIQGAFAQLPPTSISGASLKNQDTGLRQFPNTIKRG
                     ESATVKWRLNANVTGEVTASYVKVGEGVSAGLALVTGVGDRNIPLSPDSLILPEPVKH
                     LPPNTVDAARALLGQAWSIANAPAGSLPQGIASVSKQTVVNRAVELGIAGMRVDFGEP
                     VMVSLDTVLRDWLGELQDFPDTGFADTQRNTRSGYEWFDSVGAEIYERLNGPSPVTPL
                     AFHQEFANTELPRSRFISALVTHANGQAIAGTRFVDAQGKNVGFGVTPDERAGDLAQG
                     SSLRLSQTDVISGAVTNGGQMLVISNPVLDNWTLELNGWLAGAVDLSFVAPTNSQSYN
                     LYSWTGIQIAQGGKYRVRFKPLSLSSVPVLEQFQNGSWQTIAGTAAAVTPLTQPAPRV
                     VGVTQVTPEVVAGGDKYGRLVGILFSKPMLQDQAQTISRYRIGGGVLKGSNPAQQVGD
                     PISVTGARIDYGNRFVFLSLNSTIGPYIDRDLTITSMLDTRRLPLSPSPVTTAIRPRV
                     SFQGVPPGAYLT"
     gene            3305..>3520
                     /locus_tag="VGD38_11630"
     CDS             3305..>3520
                     /locus_tag="VGD38_11630"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0728714.1"
                     /translation="MTPSKQIRILSVEDHPVFRQGLATIIETESDMVLVAQAANGVEA
                     IDEFRRHRPDITLMDLRLPGANGTDILI"
BASE COUNT          736 a         1024 c         1032 g          728 t
ORIGIN      
        1 gtcagatatg cgccgggcgg cacgccctgg aacgagactc ttggcctgat ggccgtcgtg
       61 accggcgaag gcgaaagagg cagacgccgg gtgtcgagca tgctcgtgat cgtgagatcg
      121 cggtcgatgt atggtccaat cgtggaattc agactcagaa agacaaagcg attaccgtaa
      181 tcgatccgcg caccagtgac actgatcgga tcgccgactt gctgcgcggg atttgaaccc
      241 ttcaacacgc caccgccgat gcggtagcga gagatcgttt gcgcctggtc ctgtagcatc
      301 ggcttcgaga acaggatccc gaccaaacgg ccgtacttgt cgccaccggc gacgacttcc
      361 ggcgtcacct gagtaacacc gaccacgcgc ggcgctggtt gtgtcagtgg tgtgaccgcg
      421 gcggcggtcc cagcgatcgt ctgccacgag ccgttttgaa actgttcgag cacgggcacg
      481 ctgctcaagg acaacggctt gaaacgaacg cgatacttcc cgccctgtgc gatctggatc
      541 ccggtccagc tatacaggtt gtaagactga ctgttcgtcg gcgcgacgaa cgaaagatcc
      601 accgcgcctg cgagccagcc gttcaactcc agcgtccagt tgtcgagaac gggattcgag
      661 atcaccagca tctggccgcc gttggtgaca gctccgctga tgacgtccgt ctgagacagg
      721 cgcagcgaac tgccttgggc caggtcgccg gcgcgttcgt ccggtgtgac accaaagccg
      781 acgttcttac cctgcgcatc cacgaaccgc gtaccggcga ttgcctgtcc atttgcgtgt
      841 gtgacgaggg cggagataaa acgcgagcgc ggcagttcgg tgtttgcaaa ctcctgatgg
      901 aaagcgagcg gagtgacggg agatggtcca ttcaaacgct cgtagatctc cgcgccgacg
      961 ctgtcgaacc attcataacc cgaacgcgtg ttgcgttgag tatcggcaaa tcccgtatcg
     1021 ggaaagtctt gtagttcacc caaccaatcg cgcaagaccg tgtcgagcga gaccatgacc
     1081 ggctcgccga agtccacacg cattcccgct atgcccaatt cgacggcgcg attgacgacc
     1141 gtctgtttcg acacgctcgc gatgccttgc ggcagcgaac ccgcgggagc attcgcaata
     1201 ctccacgcct ggcccaacag agcgcgggcg gcgtcgaccg tgttcggcgg taagtgcttg
     1261 accggctcgg gcaggatcaa cgaatcggga gagagtggaa tgtttctatc gccgacgcct
     1321 gtgacgagcg cgagtcctgc gctgacacct tccccgactt tcacgtaaga ggcagtgacc
     1381 tcgccggtga cgttcgcatt cagacgccac ttcacggtcg cggattcgcc gcgcttgatc
     1441 gtgtttggaa actgtcgtaa tcccgtgtcc tgattcttaa gcgatgcgcc gctaatagaa
     1501 gtgggaggaa gctgcgcaaa cgcgccctgg atgtccgttt gaccggagtt gtagatcgtc
     1561 atccccaggt cgtagtcgtt gccttcacgg acgacattcg gatgtgtaaa cgtgactgca
     1621 aaactcgcgt cgcgcacgag cactgctccg gtaacctcgc cgcgaacttt gactggacca
     1681 ctcggtaaac cttcgagcat cgcctcgaga tcgaagttga ccgtatgcag tccttcctga
     1741 agaccttcga gcagaaacga cgcctgacct gcttcacctg gaccaaaact cgtggtgtcg
     1801 tcggctgtgc cgtacttgtt gtctgcgccg agaccgtgca gatcgagctc tgaaactctg
     1861 cccccaacct gagtctcagc gatgcgcaac ggatcgtccg cagtgtctcc gggtgttcct
     1921 gcattcggaa gcagcgcttt cgcgtgcaag ccacgaagca cgagtggcgc tccattgggc
     1981 gcgccgttcg agacgatcac gatcgcttca aagaactgat gcagaaatcc aacgcggccc
     2041 gggaacacga tcacaccggg aatcttcacc ggctcttcac caggcagttg cggcaaaccc
     2101 tgcggctcac cgtctggtcc ttccgcctga agcatgatgg gataaacact cggcacgtcg
     2161 ataccgggcc cgctcacgga aggtgtgccg atcaccgggc gcgggtctgt tacgccaacc
     2221 ggcggaaatg cgaccgggat gttgatggtt tgtgcggttg acgacgtcgc gatgccgaga
     2281 acgaagttga aagctctgta cgaatcaccg gtgatgttga tccctgcctg aacgatctgg
     2341 tcgtaactca gctgttgtac ctggacctga gaaacgagca ggcgctcgat gacgacgatg
     2401 ccgcacgagt caggtgtgac cgaggtcaca accggctgct cgggtgtgct caagtcgacg
     2461 acacgcaggt tccggatcaa atgatctccg gcgttgctga gcggcggtat gttcagtggt
     2521 tgaccaatcg gagcctcgag tgtgagtggc gccgttaacg atggaccagt cagttctcca
     2581 cgaacgcggt aattaggatt caaagcaccg atgatgctta gtggatctgt tccgtcggga
     2641 acgcgaacgc tggtgtgaat ggaggtcgcc gtattttttg gaacggttag ggtggcagga
     2701 tcagccgtga ccgcaagtcc aagtaagtcg aaatcggctg cggcgagaac gggcgacaag
     2761 gcactgttca tcgacaagga tgaagcagat ttgactttgc ccgttcgtgt gtttctatcc
     2821 cggcctgccg gcgcccgctt cggtttaact ctcgcgttgc gggcaccggt ttgctccccg
     2881 ttttggccgg gatcctgtaa agcactcaca ccgaccgcga acaccaggag gagagacatc
     2941 gccacgatgg tccaggttcg cagtgaactt tttagaccta tccgcttcgt cgggtggata
     3001 gagcttcccc ccgcggggtt tttgtgagtc atcgattttg aatcactccg gtccgaaagg
     3061 atgacgttct ggactgaggt ctatcgcttc cgcgatgcgc ccccacgcca ttgcaagtag
     3121 gatcgaatct atcgggtaaa cgatcactga ttgctttgct atgtaggtaa gagatgtgaa
     3181 ccttcgcccg tattaccagc ggtgcaaaat tttttgcaac gaacttcgcc gcgcaaccac
     3241 ctttgcaaat gctggctaac tgcatacgcc atcagttaca ctccgcgaaa atcagagata
     3301 taccgtgacg cccagcaaac agatccgcat tctgagtgtc gaagatcacc cggtgtttcg
     3361 gcagggtctg gccaccatca tcgagaccga atctgacatg gtcctcgtcg cgcaggctgc
     3421 aaacggcgtg gaagcaatcg acgagtttcg ccgtcaccgg ccagacatca cgctgatgga
     3481 cctgcgcctt cccggcgcca atggcactga tatcttgatc
//
LOCUS       DASWTX010000772         1988 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_405553, whole genome shotgun sequence.
ACCESSION   DASWTX010000772 DASWTX010000000
VERSION     DASWTX010000772.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1988)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1988
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405553"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(183..971)
                     /locus_tag="VGD38_11635"
     CDS             complement(183..971)
                     /locus_tag="VGD38_11635"
                     /inference="COORDINATES: protein motif:HMM:NF014003.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent chlorinase/fluorinase"
                     /protein_id="HEY0728715.1"
                     /translation="MKAGAAPVITLLTDFGTADYFVAAVKGVILTINPQVSLVDITHE
                     VPPQDIESGAFTLLTCYNDFPSGTIHVAVVDPGVGSARRGIVVRAGSHYFVGPDNGLF
                     SYICDCEPSFEVFQLTAEKYFRPSPSPSFHGRDVFAPVAAVLSTGVKRNKLGPRIKDA
                     VRLAPLAPVKDQDGSLRGRIIHIDHFGNCITNFTRADIPASAHIELRIKRHIIRTVRK
                     FFADGPSDALFAIWGSAGFLELSLNGGSAASALRAHRGDTVVLS"
     gene            complement(968..1963)
                     /locus_tag="VGD38_11640"
     CDS             complement(968..1963)
                     /locus_tag="VGD38_11640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728716.1"
                     /translation="MKYLKLPLVVLLSVCVSGLLAIVSVGAAPQGQSTALERGYRTGY
                     SDGYTAGYKDITVKAPRDFQNKEDYQRADRSFNEAWGTIEDYRDGYQQGFEAGYGAGY
                     EQQQFNSSLPTGFRRRGGASAIDVNINNSTAPVNTTSANDDEDLKVTPIGPIAIPRNT
                     ILALELITPVSTDASQRGDRIQARVVEPAQYAGYIVDGHIAQVKRPGKVKGTAQLQLA
                     FDQIRSPDNRTAELHAELLEISPMGGDNEPQVDSEGGVKGRDSTKDDAAKVGAASGVG
                     AIIGAIAGGGKGAAIGAIIGGGAGTAGVMTQRGKDIRLARGQNLKIRTSTDTGVM"
BASE COUNT          404 a          572 c          603 g          409 t
ORIGIN      
        1 ggctgagccc gtaccaggag cctagcccct ttattctttt aatcgcctcc ggcgaggccg
       61 agcctcgcct cacatccggc ggcggagccg ctgctggttg tcatgacaga gcaacgggtc
      121 ctcatggcag agtacgcgtc cttatcacag agcgaccggt cctcatgaca gatcaccttg
      181 gctcaggaca gaacaactgt gtcgccgcgg tgggcgcgga gggctgaggc ggcggagccg
      241 ccgttgaggg agagttcgag gaagccggcg ctgccccaga tggcgaagag agcgtcgcta
      301 gggccgtcag cgaagaattt gcgaacggtg cggatgatgt gtcgtttgat gcgcagttca
      361 atgtgagcgg aggcgggtat gtcggcgcgg gtgaagttgg tgatgcagtt gccgaagtgg
      421 tcgatgtgga tgatgcgccc gcgaagtgat ccgtcttgat ccttgaccgg cgcgaggggc
      481 gccaggcgta ctgcgtcttt tatccgtggt ccaagcttgt tccgcttcac acccgtcgaa
      541 agcacagcgg cgacgggcgc aaagacgtcg cgcccgtgaa agctgggact cggcgacggc
      601 cggaaatact tctcagccgt gagttggaac acttcaaaag acggttcgca gtcgcagata
      661 taactgaaga gaccgttgtc tggtccaacg aagtaatgcg aacccgcacg cactacaatc
      721 ccgcggcgcg cagaacccac acccggatcc acaaccgcga catgaattgt tcctgaagga
      781 aaatcgttat aacaggtgag cagcgtgaaa gcgccggatt caatatcctg cggcggcacc
      841 tcgtgcgtga tgtcgacaag cgaaacttgc gggttgatgg tgaggatcac acccttcact
      901 gccgcaacaa agtagtccgc cgtcccgaaa tcagttagca gcgtgatgac gggagcggcg
      961 ccggctttca catcacgccc gtgtcggttg aagtgcgaat cttcaagttc tggccgcgtg
     1021 cgaggcgaat gtctttacca cgttgcgtca tcacaccggc cgtgcccgca ccgccgccga
     1081 tgatcgcacc aatcgccgcg cccttaccgc caccagcaat cgcaccgatg attgcgccaa
     1141 cacccgaagc agcgccaact ttagcggcgt cgtccttcgt cgaatcacga cctttaacac
     1201 cgccttcaga gtcgacctgc ggctcgttgt cgccacccat cggcgagatc tcgagcagtt
     1261 cggcatgaag ttcggcagtg cgattgtcag gtgaacgaat ctgatcgaac gcgagctgga
     1321 gttgggccgt gcccttcact ttgcccggac gcttcacctg tgcgatgtga ccgtcgacga
     1381 tgtaccccgc atactgcgcc ggctcaacca cacgcgcctg aattcgatcg ccgcgctgac
     1441 tggcgtcagt ggaaaccggc gtgatcagtt cgagcgcgag aatcgtgtta cgcgggatcg
     1501 cgatcgggcc gatcggcgtt actttgaggt cttcgtcgtc gttagcggaa gttgtgttaa
     1561 cgggcgctgt cgaattgttg atattgacgt caattgcgga cgcgccgcca cggcgacgaa
     1621 atccggtagg cagcgacgag ttgaactgct gctgttcgta acccgcaccg tagccggctt
     1681 cgaaaccctg ctgataaccg tcgcggtaat cttcgatcgt tccccaagcc tcgttgaagg
     1741 agcgatcggc gcgttggtag tcctctttgt tttgaaagtc acgcggcgct ttgacggtga
     1801 tgtctttgta acccgcggta tagccgtctg aatatcctgt gcgataaccg cgttcgagcg
     1861 cggttgattg tccctgcggc gctgcgccga cagagacgat ggccagcagt ccgctcacgc
     1921 agacgctcaa taaaaccacc aggggaagct tgagatattt cattggttat gtccttccga
     1981 agaattta
//
LOCUS       DASWTX010000773         2012 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_164037, whole genome shotgun sequence.
ACCESSION   DASWTX010000773 DASWTX010000000
VERSION     DASWTX010000773.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2012
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164037"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(28..1452)
                     /locus_tag="VGD38_11645"
     CDS             complement(28..1452)
                     /locus_tag="VGD38_11645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme-like NAD(P)-binding protein"
                     /protein_id="HEY0728717.1"
                     /translation="MQPTPSASYSLTLRVKLSSRAGSLGELTTAIGRAGGDIGAIDIV
                     TVGNNYIIRDLTVASASSAHGEQIVQAVKDIDGVELLQVSDPTFLMHLGGKIEVVSKV
                     PLKTRADLSMAYTPGVARICDAIYKDPEKVFTLTIKKNTVAIVTDGTAVLGLGDIGPA
                     AAMPVMEGKAMLFKEFAGVDAFPICLNTKDPDEIVRTVKTISTGFGGINLEDISAPRC
                     FEIEERLKEELDIPVFHDDQHGTAVVVLAALINALKIVNKQMDQIKVVVNGVGAAGVA
                     CSKIIMAAGVKNIIGCDQTGAIYRGRKEHMNWLKDWYAQNTNPNNEQGTVHDVIKGAD
                     VFLGLSVPGVIDVGDVQRMAEQPIVFAMANPTPEIMPEDAADYVAVMATGRSDYPNQI
                     NNVLCFPGIFRGALACRAVRINEEMKLAAANAIAGIITDAELHPEYIVPSVFDKRVAE
                     AVANEVEAAAYKTGVARRERSPER"
     gene            complement(1463..>2012)
                     /locus_tag="VGD38_11650"
     CDS             complement(1463..>2012)
                     /locus_tag="VGD38_11650"
                     /inference="COORDINATES: protein motif:HMM:NF022188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2520 domain-containing protein"
                     /protein_id="HEY0728718.1"
                     /translation="LSSEVLSPLRSKGWSTGSVHPLISVSEPNAPIDGAFWSVEGDAR
                     AVRLGKTLVRDLGGTSFSIRTADKPLYHAAAVMTSGNVTALFDVALEMLVECGLTRET
                     ARRILQPLLVSTVHNLETKDPAAALTGTFSRGDVETVKRHLAALKDHELTEALKLYCL
                     LGRQSLKLTKKGTGITGILDGC"
BASE COUNT          357 a          602 c          612 g          441 t
ORIGIN      
        1 ctagccactt ttcgcgcgcc tggtctttca tctttctggg gagcgctcgc ggcgggcgac
       61 gcccgttttg taagccgctg cttccacttc attcgccacc gcctcggcga cgcgcttgtc
      121 gaaaacagaa ggcacgatgt actcgggatg cagttccgcg tcggtgatga tcccggcgat
      181 ggcgtttgcg gcggcgagct tcatctcttc gttgatccgc accgcacggc acgcgagcgc
      241 gccgcgaaag atccccggga agcagagcac gttgttgatc tggttcggat agtcagaccg
      301 tccggtcgcc attaccgcga cgtaatcggc ggcgtcttcg ggcatgatct cgggcgtcgg
      361 gttcgccatc gcgaaaacga tcggctgctc ggccatgcgc tgcacgtcgc cgacgtcgat
      421 cacgcccggc accgacaagc ctagaaaaac atccgcgccc ttgatcacgt cgtgcacggt
      481 tccctgttcg ttgtttggat tggtgttttg cgcgtaccaa tccttgagcc agttcatgtg
      541 ctctttgcgg ccgcggtaaa tcgcgccggt ctgatcgcag ccgatgatgt tcttcacacc
      601 cgcggccatg atgatcttcg aacacgccac acccgccgcg ccgacgccgt tcacgaccac
      661 tttgatctgg tccatctgct tgttgacgat cttcagcgcg ttgatgagcg ccgcgagaac
      721 cacgaccgcg gtgccgtgct ggtcgtcgtg aaagaccggg atgtcgagct cttccttgag
      781 ccgctcttcg atctcgaaac aacgcggcgc ggagatgtct tcgagattga tcccgccaaa
      841 gccggtcgag atcgttttca ccgttcgcac aatctcgtcc gggtctttcg tgttcaaaca
      901 aatcggaaac gcgtcgacgc cggcaaattc cttgaacagc atcgccttgc cttccatcac
      961 gggcatcgcc gcagccggac cgatgtcgcc gagtccgagc acggctgtgc cgtcagtcac
     1021 gatcgcgacc gtgttcttct tgatcgtcag cgtgaaaact ttttccgggt ctttgtagat
     1081 cgcgtcgcag atgcgcgcga cgccgggcgt gtaggccatc gagagatcgg cgcgcgtctt
     1141 gagcggcact tttgagacga cctcgatctt gccgccgagg tgcatgagaa atgtcggatc
     1201 ggaaacctgt aacagctcga cgccgtcgat gtctttgact gcctggacga tctgttcgcc
     1261 gtgcgcgctc gaagcggacg cgaccgtgag atcgcggatg atgtagttgt tgccgacggt
     1321 gacgatgtcg atggcgccga tgtcgccgcc ggcgcggccg atggccgtcg tcagttctcc
     1381 gagcgatccg gcgcgagaag aaagcttgac gcgcagagtc agactgtaac tcgcgcttgg
     1441 tgttggctgc atatttcaga ctttaacatc cgtcaagaat ccctgtaatc cctgttccct
     1501 ttttggttaa cttgagggac tgccggccaa gcaggcaata cagcttgagc gcttcggtca
     1561 gctcgtggtc cttcaatgcc gcgaggtgtc gcttgaccgt ttcgacgtcg ccgcgtgaaa
     1621 acgtgccggt cagggcggcg gccggatctt ttgtttcgag gttgtggacc gtgctgacga
     1681 gcaagggttg aagaatccgg cgggcagttt cgcgtgtgag gccgcactca accagcatct
     1741 ccagggcgac gtcgaacagg gcggtgacgt taccggaagt catcactgcc gcggcgtgat
     1801 agagcggttt gtccgcggtg cggatcgaaa agctcgtgcc gccgagatcg cgcaccagtg
     1861 ttttgcctaa acgcacggcg cgggcgtcgc cttcgacgct ccagaacgcg ccgtcgatcg
     1921 gagcgtttgg ctcgctgacg gaaatcaacg gatgaaccga gccggtgctc cagcctttag
     1981 acctcagagg tgaaagaact tctgatgaca gc
//
LOCUS       DASWTX010000774         6572 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_99244, whole genome shotgun sequence.
ACCESSION   DASWTX010000774 DASWTX010000000
VERSION     DASWTX010000774.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6572
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99244"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..371
                     /locus_tag="VGD38_11655"
     CDS             <1..371
                     /locus_tag="VGD38_11655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728719.1"
                     /translation="GGRFRMDFGKPIEIAQVNSYSWHPNSRGPQLYKLYAADDSETTL
                     DLNPQRGVDPATRGWKFIATVNTLPQQGEDGGQYAASVSASSGSLGQFRYLLFDCYVT
                     ELYDNWGNTFYSEIDVVVKN"
     gene            complement(387..968)
                     /gene="leuD"
                     /locus_tag="VGD38_11660"
     CDS             complement(387..968)
                     /gene="leuD"
                     /locus_tag="VGD38_11660"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: protein motif:HMM:NF002458.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEY0728720.1"
                     /translation="MQPFRQHTGLVAPLDRANVDTDQIIPKQFLKRIERTGFGQFLFY
                     DWRYSQDGQPNPSFVLNESRYQGASILVADKNFGCGSSREHAPWALGEFGFRVIIAPS
                     FADIFSNNCFKNGILPIALPVEEIMKRAREVEGYQLTVDLEQQTVSDDSGLATPFTVG
                     TFQRYCLLEGLDDIGLTLRHEDAIKRYEAGRGF"
     gene            complement(968..2365)
                     /gene="leuC"
                     /locus_tag="VGD38_11665"
     CDS             complement(968..2365)
                     /gene="leuC"
                     /locus_tag="VGD38_11665"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: protein motif:HMM:NF009116.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEY0728721.1"
                     /translation="MKSLFDKLWQAHVVREAEGEPTLLYIDLHLIHEVTSPQAFDGLR
                     QAGRRVRRPDLTFGTVDHNVPTTDRSLPIADAVAANQVEALRRNCKEFGVQLFDIHSP
                     EQGIVHVIGPELGLTQPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQCLPQN
                     KPRTMKVHTSGALPEGVTAKDLALGIIGKSGTDGATGYVIEYAGEAVRALSMEGRMTL
                     CNMSIEAGARAGMIAPDETTFAYLKGRRFVPKHWDKALSRWRTLVSDDDAVFDATVEI
                     DASRLEPFVTWGTSPGMVVPITSVVPDPADVQNAADRQAAERALEYMALEPHTSIQTI
                     AIDRAFIGSCTNARLEDLRAAARVVKGYRISSSVSAMVVPGSQEVKRAAEREGLDRIF
                     NEAGFEWREAGCSMCLGMNADILQPGERCASTSNRNFEGRQGRGGRTHLVSPMMAAAA
                     AIRGHFTDVREWEFK"
     gene            complement(2373..3473)
                     /gene="leuB"
                     /locus_tag="VGD38_11670"
     CDS             complement(2373..3473)
                     /gene="leuB"
                     /locus_tag="VGD38_11670"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: protein motif:HMM:NF012407.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEY0728722.1"
                     /translation="MKLRITVLPGDGIGPEVTAEAVRVLQTVAAIHGYRFEFEEQAIG
                     GVAIREFGSPLPTKTLDACLASNAVLLGAVGAPEYDRLPPNQRPEAGLLLLRRALGGY
                     ANLRPAISYSAIAGCSPLREDVCEGADILIVRELLGGLYFGEPRGFNGSTVATNTMTY
                     SVEEIERIARVAFEAARGRRGKVTSVDKANVLETSQLWRQTVTRVSRDYPDVTLDHLY
                     VDACAMHLMVNPRRFDVVLTENLFGDILSDEAAVIAGSLGMLASATIGGEVGLYEPVH
                     GSAPDIAGQGVANPCGAIATAAMMLRHSAGLDQEATDIENAIHAVLEAGYRTPDIASG
                     TGGYLASTSEIGELVCEAVTEIADMRHAYHAV"
     gene            complement(3479..4627)
                     /locus_tag="VGD38_11675"
     CDS             complement(3479..4627)
                     /locus_tag="VGD38_11675"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: protein motif:HMM:NF002086.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEY0728723.1"
                     /translation="MSRISIFDTTLRDGEQSPGCSMDLREKIRMAEKLEELGVDIIEA
                     GFPIASEGDFAAVRAVATQCREVKVAALCRTAEQDVARAAEALARAAHPRIHTFCATS
                     DIHLEHKLKKSRAEVIEMTRAAVSQARSYAEDVEFSAEDATRSDIDYLCEVLEVAVDA
                     GASVLNVPDTVGYTTPPEMARLVQQVRERVVRDRDVIVSVHCHNDLGLAVANSLAAFE
                     AGARQVECTINGIGERAGNASLEEIVMALHVRSDRLPFETGIVTTELYPASQLLSSIV
                     GFDVQPNKAIVGRNAFAHEAGIHQHGVINNPLCYEIMTPESVGVPANSLVLGKHSGRH
                     ALSLRYQELGYKVSSSELEAAYRRFTDLADKKKRIYDQDLISLLSAAA"
     gene            complement(4719..6533)
                     /locus_tag="VGD38_11680"
     CDS             complement(4719..6533)
                     /locus_tag="VGD38_11680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728724.1"
                     /translation="MIQITICLFSFLLLSPPTDLRKTALKSATPDDEIVRLDINNDRQ
                     PDILERWWNGKRVRWLDENGDMLPTDTRGDQVADVMQIDRNGDGVYDTALDINIKWAD
                     NDGDGRADLQAFATQGREWSNGKFDPGTSHWMVFVDVEKDGVLGWIDWEKYDFDNDNW
                     GYTGVTDWLPDYNGDAVFLKVHRPPQSLPDPRLNWENPFAFFDFDKDGASEMAIRWLD
                     PVPPLDKDITKLSGVLNEAFATFDVDNDSTKGNETDYDMSLRGAGGPGIPYRQFVHKY
                     PALKGNPKFDRCFQWNNWRQIDELMYMPHEKSFDSFFTTRWGSMYFVFDEDDDDHRWE
                     RVEMYYPMHGFGGPKEIDLYTTKKWRRSNYAELAMVAPGERPGISGHPQADSIGDRGE
                     FDEDNSGGGKLYVGVFDRKLHLAGAEWGAWTVDKNGEFHGGNKTPSPRPIAPRVEEVV
                     KYTDTDNNGFLDTVEHDYDGDRTIDLRVSLLDYRSASNPNPDVVPLFDIHKAGWKGLN
                     ELATQIANQSFQEALVVYRAAWRRGLTTPEIDKLASASAIGERYDHGYWLKEKIFREI
                     RSRLRQTQQNQLEKDLTRLYYMGQFEEYARLIALVPGR"
BASE COUNT         1330 a         2036 c         1831 g         1375 t
ORIGIN      
        1 cgggcgggcg cttcagaatg gacttcggca aaccgatcga gatcgcgcag gtgaattctt
       61 attcgtggca cccgaacagt cgtggtccac agttgtacaa gctgtacgcc gccgacgatt
      121 ccgaaacgac tctcgatctc aaccctcagc gcggtgtcga ccccgcgact cgcggttgga
      181 aattcatcgc aaccgtgaac acgttgccgc aacagggcga ggacggcgga cagtacgccg
      241 cgagcgtcag cgcttcaagt ggcagtctgg gccagtttcg ctatctgctt tttgattgtt
      301 acgtgacgga gttgtacgac aactggggca acaccttcta cagcgagatc gacgtggttg
      361 ttaaaaattg attcgccttc tatccgctaa aatccccgtc ccgcttcgta acgcttgatg
      421 gcgtcctcgt gtctcagcgt caaccctata tcatcaagcc cttccaacaa gcagtagcgc
      481 tgaaaagtcc cgacggtaaa cggagtcgcg agcccactgt cgtctgaaac tgtttgctgc
      541 tcaaggtcga cggtcagttg ataaccctcg acttcccgcg cgcgcttcat aatttcttca
      601 accggcagcg cgatcgggag tattccgttc ttgaagcagt tgttgctgaa gatgtcggca
      661 aacgacggag cgatgatcac tcgaaaacca aactcgccaa gcgcccacgg cgcgtgctct
      721 cgtgacgaac cgcaaccgaa gttcttgtcc gcaacgagta ttgacgcacc ctgataccgg
      781 gactcgttca gcacgaacga cggattcggc tgcccgtctt gcgagtagcg ccagtcgtaa
      841 aaaagaaact gcccaaaacc cgtgcgctcg atgcgtttca aaaactgctt cggaatgatc
      901 tgatcggtat cgacgttcgc acgatcgagc ggcgcaacga gtccggtgtg ttggcgaaac
      961 ggctgcatca cttaaactcc cactcgcgca cgtcagtaaa gtgtccgcgg atcgccgctg
     1021 ccgcagccat catcgggctc acgagatgcg tgcgcccgcc gcgtccctgg cgcccttcga
     1081 aattgcgatt gctcgtcgac gcgcaacgct cgcccggctg cagtatgtcg gcgttcattc
     1141 ccaaacacat cgaacaaccc gcttcgcgcc actcgaatcc cgcttcgttg aaaatgcgat
     1201 cgagaccttc acgctccgcc gcgcgcttca cttcctgcga acccggtacg accatcgcac
     1261 tcaccgacga actaatgcga taacccttca ccacacgcgc ggccgcgcgc agatcttcga
     1321 gacgcgcgtt cgtacacgac ccgataaacg cgcgatcgat cgcaatagtt tgaatgctgg
     1381 tgtgcggctc gagcgccatg tattcgagcg cacgttccgc ggcctggcga tccgctgcgt
     1441 tctgcacatc tgccggatcg ggaacaacgc tcgtgatcgg cacgaccatg cccgggctcg
     1501 tgccccacgt tacgaaaggt tcgagtcgcg acgcatcgat ctcgaccgtc gcgtcgaata
     1561 cggcatcgtc gtcactcaca agcgtacgcc aacgactcaa cgccttgtcc caatgcttgg
     1621 gaacgaatcg tcgccctttc agatacgcga acgtcgtttc atccggcgcg atcatgcccg
     1681 cgcgcgcgcc ggcttcaatg ctcatgttgc acagcgtcat gcgcccctcc atcgaaagcg
     1741 cgcgcaccgc ttcacccgcg tactcgatca cgtaaccggt cgcgccgtca gtgccgctct
     1801 tgccgatgat gccgagcgcg agatccttcg ccgtcacacc ttccggcaac gcgccgcttg
     1861 tgtgcacttt catcgtgcgt ggtttgtttt gcggcaaaca ctgcgttgcg agtacgtgct
     1921 cgacctcgct cgtaccgatg ccaaacgcga gtgcgccaaa cgcgccgtgc gtgctcgtgt
     1981 ggctgtcacc gcaaacgatc gtcatgccgg gttgcgtcaa cccgagctcc ggaccgatga
     2041 cgtgtacgat gccttgttcg ggcgagtgaa tgtcaaacaa ctgcacgcca aactccttgc
     2101 agttgcgccg cagtgcttcg acctgattcg ccgcgacagc gtcggcaatc ggcagactgc
     2161 gatcggttgt gggcacattg tggtccaccg tgccgaaagt cagatcaggc cggcggaccc
     2221 ttcggcccgc ctgccttaga ccatcaaacg cctggggaga cgtgacctca tgaatgaggt
     2281 gcagatcgat atagagcagc gtcggctccc cctccgcctc acgaacgacg tgggcctgcc
     2341 acagtttgtc gaacagggat ttcacagatt ccttacacag cgtggtacgc gtggcgcatg
     2401 tcggcgattt cggttacggc ttcgcagacc agttcgccga tttcgctggt gctggcgagg
     2461 tagccgccgg tgccggaggc gatgtcgggt gtccgatagc cggcttcgag cacggcgtga
     2521 atcgcgtttt cgatgtccgt tgcttcctga tcgagacccg ccgagtggcg cagcatcatc
     2581 gccgctgtcg caatcgcacc gcagggattc gcgacgccct gacccgcaat gtccggcgcc
     2641 gatccgtgta ccggctcgta aagtccgact tcgccaccaa tcgtcgccga cgcgagcatc
     2701 ccaagcgatc ccgcaatcac cgccgcttcg tccgaaagaa tgtcgccaaa caagttctcg
     2761 gttaacacga cgtcaaaccg ccgcggattc accatcaggt gcatcgcaca cgcgtcgacg
     2821 taaagatggt ccaacgtgac atccggataa tcacgcgaga cgcgcgtgac cgtctgccgc
     2881 cacagttgcg aagtctcgag cacgtttgcc ttatcaaccg acgtgacttt cccacgccgt
     2941 ccccgcgccg cctcaaaagc aacgcgcgca atgcgctcga tctcttcgac cgaataagtc
     3001 atcgtgttgg tcgcgacagt cgatccattg aacccgcgcg gctcgccgaa gtacaacccg
     3061 ccaagcaact cgcgaacgat cagaatgtcc gcgccctcac acacgtcttc acgcaacggc
     3121 gaacaacccg caatcgccga atacgaaatc gccgggcgca gattcgcgta tccaccaagc
     3181 gcgcgccgca gcaacaacaa gcccgcttca gggcgctggt tcggcggcag ccggtcgtat
     3241 tcaggagcgc cgactgcgcc gagcagcacc gcgttgctgg ccaggcacgc atccagtgtt
     3301 ttcgtcggca acggcgaacc gaattcgcga atcgctacgc cgccaatggc ctgttcctca
     3361 aactcaaacc ggtacccgtg aattgcagca acagtttgta gtacccgaac cgcttccgcg
     3421 gtaacctctg gtccaatgcc gtcccctggg agaaccgtaa ttcttaattt catgatcttc
     3481 acgcggctgc actaagcagc gaaatcaaat cctgatcgta aatccgtttt ttcttatccg
     3541 ctaaatccgt gaacctgcgg tacgccgcct cgagctcgct cgaactaact ttgtacccaa
     3601 gctcctgata acgcaacgac agcgcatgac gccccgagtg cttgccgagc acgagcgagt
     3661 tcgcgggcac gccgacagat tcaggcgtca tgatctcgta gcagagcgga ttgttgatga
     3721 cgccgtgttg atgaatgccg gcctcgtgcg cgaacgcatt gcggccgaca atcgctttgt
     3781 ttggctgcac gtcgaacccc acgatgctcg agagcaactg gctggccgga taaagttcag
     3841 tggtgacgat tccggtttcg aatgggagcc gatccgaccg cacgtgcaac gccatcacga
     3901 tctcttccag cgaagcattg cccgcacgtt cgccgattcc gttaatggtg cattcaacct
     3961 gtcgcgcccc ggcttcaaac gccgcaagac tgttggcgac cgcgagaccg agatcgttgt
     4021 ggcagtgaac actgacaatc acgtccctgt ctctcacgac ccgttcgcgc acctgttgga
     4081 ccaaacgcgc catctcgggc ggcgtcgtgt aaccaacagt gtccggcacg ttcagcaccg
     4141 aagcgcccgc atcaaccgca acttcgagca cctcgcaaag gtagtcgata tcgctgcgcg
     4201 tggcgtcttc ggccgaaaac tcgacgtcct cagcataact gcgcgcctgg ctaacggcag
     4261 cgcgagtcat ctcgatcact tcagcccgcg acttcttcag tttgtgttct agatgaatgt
     4321 cggacgttgc gcagaaggtg tggattcgcg gatgggccgc gcgagccaac gcttcagccg
     4381 cccgcgcgac gtcctgttcg gcggtgcggc acagcgcagc gactttgacc tcgcggcact
     4441 gcgtggccac ggctcgcacc gcggcgaagt cgccttcaga agcgatcgga aacccggctt
     4501 cgatgatgtc gacgccgagc tcctcgagct tttccgccat ccggatcttc tctcgcaggt
     4561 ccatcgaaca ccccggtgac tgttcgccat cgcgtaaggt ggtgtcgaag atgctgattc
     4621 tggacattgg ggattttcct cctgtgggca agggaggatg ctaaggagtg ttggtccgag
     4681 agtcaaagct ataatcttta tggaaagata aattaaattt accttcccgg gactagcgcg
     4741 ataaggcgtg cgtattcctc aaactggccc atgtagtaaa gccgcgtcag gtctttttcg
     4801 agttgattct gttgagtttg gcgcaggcgc gagcggatct cgcgaaagat tttttccttc
     4861 agccagtagc cgtgatcgta acgttcgccg atagccgagg cggaagcgag cttgtcgatc
     4921 tcgggcgttg tcaggccacg gcgccacgcc gcgcgataaa ccaccagcgc ttcctgaaac
     4981 gactggttag cgatctgcgt ggcgagttcg ttcaggcctt tccagcctgc tttgtgaatg
     5041 tcgaacagcg gcacaacgtc cggattcgga ttgctcgcgg aacgataatc aagcagcgac
     5101 acgcgcaggt cgatcgtgcg gtcgccgtcg taatcgtgtt cgacggtgtc gagaaaaccg
     5161 ttgttgtccg tgtcggtgta cttcacgacc tcttcaacac gcggggcgat cggccgcggc
     5221 gaaggcgttt tgttcccacc gtgaaactcg ccgttcttat cgacagtcca cgcgccccat
     5281 tccgcgcccg cgaggtgcag ctttctatcg aacacaccga catacaactt tccgccgcct
     5341 gaattgtctt cgtcaaactc accgcgatcg ccgatcgaat cagcctgcgg atgaccggag
     5401 attcccggcc gctcgccagg cgcgaccatc gccagctcag cgtagttgct gcggcgccac
     5461 ttcttcgtcg tatagagatc gatctccttt ggaccaccaa agccgtgcat cgggtaatac
     5521 atctcgacgc gttcccagcg atgatcgtcg tcgtcttcgt caaacacgaa atacatcgaa
     5581 ccccagcgcg tggtgaagaa actgtcgaaa ctcttttcgt ggggcatgta catcagctca
     5641 tcgatctgcc gccagttgtt ccactgaaag caccgatcga acttcggatt gcctttcagc
     5701 gcgggatact tgtgcacgaa ttgtcgatac ggaatgcctg gaccaccagc gccgcgcaag
     5761 gacatgtcgt aatcagtctc gttgcctttg gttgaatcgt tgtcgacgtc gaacgtggcg
     5821 aacgcttcgt tgagaacgcc ggaaagcttc gtgatgtcct tgtcgagggg cggcaccgga
     5881 tcgagccagc gaatggccat ctcgctcgcg ccgtctttgt cgaagtcgaa gaaagcaaag
     5941 gggttttccc agttgagacg cggatcgggc agcgactgcg gtggacgatg aactttcagg
     6001 aaaacagcgt cgccgttgta gtcgggaagc cagtcggtga cgccggtgta gccccagtta
     6061 tcgttatcga aatcgtattt ctcccaatcg atccagccga gcacgccgtc tttttcgacg
     6121 tcgacgaaga ccatccagtg tgacgtgccc ggatcgaact tgccgttgga ccactcgcgg
     6181 ccttgcgtgg cgaaggcttg cagatcggcg cggccatcgc cgtcgttgtc ggcccacttg
     6241 atgttgatgt cgagcgcggt gtcgtagacg ccgtcgccgt tgcgatcgat ttgcatgacg
     6301 tcggcgacct gatcgccgcg cgtgtcggtc gggagcatgt cgccgttttc gtcgagccag
     6361 cgcacgcgct tgccgttcca ccagcgttcg aggatgtcgg gctggcgatc attgttgatg
     6421 tcgagacgaa cgatctcgtc gtcaggtgtt gctgatttga gtgccgtttt gcgcagatcg
     6481 gtgggcgggg ataaaagcag aaaagaaaaa aggcaaattg tgatctggat catgacgggg
     6541 gcttatagca cctcggtttc gtgaagtaca at
//
LOCUS       DASWTX010000775         4477 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_362066, whole genome shotgun sequence.
ACCESSION   DASWTX010000775 DASWTX010000000
VERSION     DASWTX010000775.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4477)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4477)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4477
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362066"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..634)
                     /locus_tag="VGD38_11685"
     CDS             complement(<1..634)
                     /locus_tag="VGD38_11685"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY0728725.1"
                     /translation="MPTEFRNEPFTDFSKEENAQAMRAALEKVGAELGREYPLVIGGE
                     RIATDSKLDSFNPANRTQLVGRFNKATKELASRAVEEAAKAFQTWRHAPAEERSALLY
                     RVAEILRERRHEFSAWMVYEVAKTWAEADADTAEAIDFCDFYANEMLRYASDQPLYQV
                     TGEESKLEYIPLGVGAVIPPWNFPLAIMAGMTVASIVTGNTVVLKPSSDAP"
     gene            complement(662..1177)
                     /gene="def"
                     /locus_tag="VGD38_11690"
     CDS             complement(662..1177)
                     /gene="def"
                     /locus_tag="VGD38_11690"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: protein motif:HMM:NF001159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEY0728726.1"
                     /translation="MALLEIVKWPAPVLDTPADPVTEFDESLAKLVSNMFETMYAAPG
                     VGLAAVQVGVPKRLFVMDCSGGKDPKQRVVLINPEVLRVEGTQNGDEGCLSFPGIFTP
                     VERNLRAIVKAQDLKGNWFELDGMELTARCMLHETDHCDGIVFLDKMSALKREIVKRK
                     IKKLQKAGKWD"
     gene            complement(1681..2880)
                     /gene="aroC"
                     /locus_tag="VGD38_11695"
     CDS             complement(1681..2880)
                     /gene="aroC"
                     /locus_tag="VGD38_11695"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEY0728727.1"
                     /translation="MLRFTTAGESHGRALVAIVEGLPAGLPINQELIDDELRRRQLGY
                     GRGGRMKIERDHAEILNGVRHGLTLGSPITLLIENKDWPNWTDVMAAEAREIAPEKSR
                     RLKRPRPGHADLPGGLKYDVRDLRNILERASARETTARVACGALAKQLLASFGIEVRS
                     HVIQLGGIPDKPLELTWDQIAAIADDAPLHCADAEVEQKMIALIDEVRHRGDTLGGIF
                     EVAVRGVVPGLGSHTAWDLKLDGLLAQAVMSIPAVKAVSIGAGAEASSLPGSEVHDEI
                     AYNAETREFIRETNRAGGLEGGITNGEEIRIRGHLKPLSTLRRSLRSVDIDTKEEEAA
                     AFERSDVTAVPAAGVIGESMVALTLARAMREKFAGDSLGEMKRNFEASREQLRGYSSE
                     HATVRVR"
     gene            complement(2880..4283)
                     /locus_tag="VGD38_11700"
     CDS             complement(2880..4283)
                     /locus_tag="VGD38_11700"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEY0728728.1"
                     /translation="MQTKSDPDEIQSFLGDASFIRDGHADRVVLPETIEEVAEVLAAA
                     NRDRIPVTVSGAGTGTVGGRVPFGGIVLATDRLNRIKSIENFRGVAEAGVILADFQRA
                     VDQQGLLYPPDPTERGCFLGGTVATNASGARTFKYGPTRNYIERLKVALASGEVLDLR
                     RGYKIPKIPTPSYHRPATRKNAAGYFVSQNMDALDLFIGSEGTLGVICEIEARLVPKP
                     QGLLSGVVFFANESDVLAFVAEAKSGAVDARALEFFDNESLNFLRQKYPEVPGAAVAA
                     IFFEQETTDQTEEAILNQWMVLLDKHHAFNDSWFATNEQDQARLREFRHQLPVLMNEW
                     FAHYRQRKVSTDMAVPDVAFPGLFDLYKQTLASSGLRYTIFGHIGDNHVHVNILPRDE
                     DEGARARELYVQFLKYAASVGGTLSAEHGVGKLKRDYLRLFYNDEQLREMAALKKTFD
                     PHGILGRGNIFAEDFLN"
     gene            complement(4283..>4477)
                     /locus_tag="VGD38_11705"
     CDS             complement(4283..>4477)
                     /locus_tag="VGD38_11705"
                     /inference="COORDINATES: protein motif:HMM:NF014232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrB/UvrC motif-containing protein"
                     /protein_id="HEY0728729.1"
                     /translation="SEADYFKVPTEVDQIEDYSPENLEATITRLEVEMRAAAKRFEFE
                     KAAELRDRIKVLRERELQLT"
BASE COUNT          866 a         1371 c         1261 g          979 t
ORIGIN      
        1 tcggcgcgtc tgaagaaggc ttcaacacga ccgtgttgcc ggtcacgatt gaagccacag
       61 tcataccggc catgatcgcg agcgggaagt tccacggtgg aatcacggcg ccgacgccca
      121 gcggaatgta ctcgagcttg ctttcctcgc cagtcacttg atacagcggt tggtcgctgg
      181 cgtagcgcaa catctcgttg gcgtagaagt cgcagaagtc gatcgcttca gccgtatccg
      241 cgtcggcttc ggcccacgtc ttggctactt cataaaccat ccacgcggaa aactcgtgcc
      301 gccgctcgcg caggatttcc gcgacgcgat acagcaacgc cgagcgctct tcagccggag
      361 cgtgccgcca cgtttgaaag gctttcgcgg cctcttcgac cgcacggctc gcgagctctt
      421 tggtcgcttt gttgaagcgg ccgacgagct gtgtgcgatt ggctggattg aaactgtcga
      481 gtttgctgtc ggtggcgata cgctcgccgc cgatgactag cggatactca cgcccgagtt
      541 cggctccgac cttctcgagt gcagcgcgca tggcctgcgc gttctcttct ttgctgaaat
      601 cagtaaacgg ttcattacga aattcggtag gcattcagac tccgtagttt gtacttggtt
      661 gttaatccca cttgccggct ttttgcagtt tcttgatctt gcgcttcacg atctcgcgtt
      721 tgagcgcgct cattttgtcg agaaacacga tgccgtcgca gtggtcggtt tcgtgcagca
      781 tgcagcgcgc ggtgagttcc atgccgtcca gctcaaacca gtttcctttc aggtcctggg
      841 ctttgacgat cgcgcgcagg ttgcgttcga cgggcgtgaa gatgccggga aaagaaaggc
      901 atccttcgtc gccgttttgc gtgccttcga cacgcaggac ttccgggttg atgagcacga
      961 cgcgctgttt cggatctttg ccaccggagc agtccatgac aaaaagccgc ttggggactc
     1021 cgacctgcac cgcggccagg ccgacgcccg gcgcagcgta catcgtctca aacatattgc
     1081 tgaccagctt cgcgaggctc tcgtcaaact ccgtcacggg atccgcggga gtatcgagca
     1141 ccggcgccgg ccatttaact atctccaaca gtgccattat tgcttccgtt tctaagtcgc
     1201 cgttgattgc gtgtgacgcc accttcgagc gacggtctac gatgtggatt ctacgccgaa
     1261 cgctgctcca acgctaattg cctcttggct gtaccgaagg gcttttatag aacacctggg
     1321 cgctcgggta agccgtagcg cgttggtaac cgtacagttt gtgcacggta ccaagtttgt
     1381 gcacggtacc agtctgtaaa cgttaccggt tttgtaaaca gtagcgctcg aataaacggt
     1441 agcgcttgat aaaacccggc ttccgccgcc ggatgtgagg cgaggctctg cctcgccgga
     1501 ggtggcgggt ctaaaagcat tggggcttcg cccctggttc gggcttcgcc ccccagactg
     1561 ttaggccaga ggccgaacga ggggcgcagc cccatttgtt ttttcaacgt caacggcggg
     1621 gcgtagcccc gcctcacatc cggcggcgga gccgttgagt gagttgcgct tcgctatcaa
     1681 ctaacgcact cgcaccgttg cgtgctcgct cgaatacccg cgaagctgct cgcgggaggc
     1741 ttcgaagttg cgcttcattt cgccgagact gtcgccggcg aacttctcgc gcatggcgcg
     1801 cgcgagggtc agagcgacca ttgattcacc gatgacgccg gctgcaggaa ccgcggtgac
     1861 gtcggagcgt tcgaaggccg cggcttcttc ttccttcgtg tcgatgtcca cagatctcag
     1921 cgagcgacgg agcgtcgaca aaggtttcag gtggccgcgg atgcggatct cttcgccgtt
     1981 cgtaatgcca ccttcgagcc cgcccgcgcg gttcgtctcg cgtatgaact cgcgcgtctc
     2041 ggcgttgtaa gcaatctcgt cgtgaacttc agaacccggc agactgctcg cttcggcgcc
     2101 cgcgccgatg gaaacagcct tcactgccgg tatcgacatc accgcctgcg ccagcaatcc
     2161 atcaagcttc agatcccacg cagtgtgcga acccaacccc ggcacgacac cgcgaacagc
     2221 gacctcgaag atcccgccaa gtgtgtcgcc gcggtgacgc acttcgtcaa tcaacgcgat
     2281 catcttctgc tcgacttcag cgtcagcaca gtgcaacggc gcgtcgtcag caatcgcggc
     2341 gatctggtcc cacgttaact cgagcggctt atcgggtatg ccgccgagtt gaatcacatg
     2401 actgcgcact tcgatgccaa acgacgcgag caactgtttc gcaagcgcgc cacacgcaac
     2461 gcgcgcggtc gtttcgcgag ccgaagcgcg ttcgagaatg ttgcgcagat cgcgcacgtc
     2521 gtacttcaac ccgcctggca gatcggcgtg ccccggccgc gggcgcttca aacgccgcga
     2581 cttctccggc gcaatctcgc gcgcctcagc agccatgacg tcggtccagt tgggccaatc
     2641 cttgttttcg atcagcaacg tgatcggcga gccgagcgtg agcccatgac gaacgccgtt
     2701 caaaatctca gcgtggtcgc gctcgatctt catgcgcccg ccacgcccgt aaccgagctg
     2761 ccgccggcgc agttcgtcgt cgataagttc ttgattgatc ggcagtcccg cgggcagacc
     2821 ttcaacaatc gcgaccagcg cgcgtccgtg tgattctccg gctgtggtga atctgagcat
     2881 cagttcaaga agtcctcggc gaagatgttt ccccgtccga ggataccatg cggatcgaaa
     2941 gtctttttca acgcggccat ctcgcgaagc tgttcgtcgt tataaaaaag ccggaggtag
     3001 tcgcgtttca acttgccgac gccgtgttcg gcggagagcg taccaccaac cgaagcggcg
     3061 tacttcagaa actgcacgta gagctcgcgc gcgcgggcgc cttcgtcttc gtcgcgcggg
     3121 agtatgttga cgtgaacgtg attgtcaccg atgtgaccga agatcgtgta acgcaaacca
     3181 cttgacgcca atgtctgttt atatagatca aagagtccgg gaaacgcgac gtccggcacg
     3241 gccatgtcgg ttgagacttt tcgctgccgg taatgcgcaa accactcgtt catcaacacc
     3301 gggagttggt ggcgaaactc ccgcaatctt gcctggtcct gttcgttggt agcaaaccac
     3361 gaatcgttga aggcatggtg cttatccaac aaaaccatcc actgattgag aatcgcttct
     3421 tccgtttgat ccgtcgtttc ctgttcgaaa aagatcgcgg cgacagccgc cccggggacc
     3481 tccgggtatt tttggcgcag gaagttcagt gattcgttat cgaagaattc gagtgcgcga
     3541 gcgtctacag cgccgctctt tgcttccgcg acgaaggcga gcacgtcgga ttcgttggcg
     3601 aagaacacca caccgctcag gagaccttgc ggcttcggca cgagcctggc ttcgatctcg
     3661 cagatgacgc cgagagtgcc ttcgctgccg atgaaaagat cgagtgcgtc catgttttga
     3721 gagacgaagt aacccgctgc attcttgcgc gtcgccgggc gatggtaact cggcgtaggg
     3781 attttgggga tcttgtagcc gcggcgcaga tcaagaacct cgccggaagc aagcgctacc
     3841 ttcaaacgct cgatgtaatt gcgggttggg ccatacttga atgtgcgagc gcccgaagcg
     3901 ttcgttgcga cagtgccacc gaggaaacag ccgcgttcgg tcgggtctgg cgggtaaagc
     3961 aacccttgct gatctacggc tcgttgaaaa tccgctagta ttactccggc ttcagccacg
     4021 cctcgaaagt tttcaatact cttaatacgg ttgagccgat ccgtcgccaa cacgatcccg
     4081 ccgaacggaa cgcgcccgcc aaccgttccc gttccagctc ctgaaaccgt taccggaatc
     4141 cgatcgcgat tagcagcagc aagcacttcc gccacttcct caatcgtttc cggaagtacg
     4201 acgcgatccg cgtgtccgtc gcgtataaaa ctcgcgtctc ctaaaaacga ctgtatctcg
     4261 tcagggtcgg acttcgtttg catcacgtca actgtaattc acgctcgcgc aacaccttga
     4321 tccgatcgcg cagctcagcc gccttctcaa actcaaaccg cttcgccgcc gcacgcatct
     4381 ccacctccaa ccgcgtaatc gtcgcttcga ggttctccgg cgagtagtcc tcgatctggt
     4441 ccacttcggt cggcaccttg aagtagtccg cttcaga
//
LOCUS       DASWTX010000776         3504 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_421620, whole genome shotgun sequence.
ACCESSION   DASWTX010000776 DASWTX010000000
VERSION     DASWTX010000776.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3504
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421620"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..822)
                     /gene="carA"
                     /locus_tag="VGD38_11710"
     CDS             complement(<1..822)
                     /gene="carA"
                     /locus_tag="VGD38_11710"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR01368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEY0728730.1"
                     /translation="MSSKIPALLALEDGRTFRGTSWGAEGEACGEMVFNTSMTGYQEV
                     LTDPSYAGQIVCMTYPLIGNYGVNEEDAESSRPWVEGFVVREASRITSNWRAEESLAS
                     YLKRWNIVAIEGIDTRALVRHIRDKGAMRACLSTVDLDEASVVEKARQSPPMENRELA
                     SVVTTKEPYEFSAKGEERFHVICYDFGVKRNSLRELAELGVRTTVVPASTPAADVLAM
                     KPDGIFLSNGPGDPASMNKEVEEIRSLLQAQVPMFGICFGHQLLGRAFGGSTFKLV"
     gene            complement(829..2133)
                     /locus_tag="VGD38_11715"
     CDS             complement(829..2133)
                     /locus_tag="VGD38_11715"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728731.1"
                     /translation="MTNWLRLLLMIFYAPLRGMREVREQSLAPVAFLAFIAQAAYSYL
                     TDKFSGVGYGGRIFSELFNAALIVVLVAVVLVPILTLVANTFERRGSFRVVITQEYAP
                     VAATMFYVLTVANVISILIAVVFHYSGLQDQQVAAMIQNSEQSRAMLQRMFGNTAEVD
                     LAAEQLKNPALVAQNLFVMPKLVLFSIGTVFGVRDVFRTSFLRALGISIISAVAAMFV
                     APTAAWLFSGVLGSPFLIILLFMLLRGYFSDIMGTHRAKAAFKQNLESATLNPADASA
                     HYNLGLIHQNRGELDQARERFERALQIDDGEIDASYQLGRIARQQKRYSDAIQNFEHV
                     VTRDPAHSQHEIWREVAATYIAAGQYEDARNALEQFLEHRPSDPEGLYLMGRAHAGLG
                     HKREATNLMQACIEAVKTAPAYKYRASKRWLNEAQQFIKGSQ"
     gene            complement(2147..2887)
                     /gene="lepB"
                     /locus_tag="VGD38_11720"
     CDS             complement(2147..2887)
                     /gene="lepB"
                     /locus_tag="VGD38_11720"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:TIGR02227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEY0728732.1"
                     /translation="MFGISKRRPPPFGGVHVDDDKDIQVQKPEQAQRNDLWSEARLLL
                     RDLIFALMIAALVVVFVVQPVKVEGTSMLPRLHDGERIFVNKLIYYDEFRWAPKVDRG
                     DIVVFWYPEDPSKSYIKRVIGLPGDTIEVHEGVVRVNGRDVEERYLDPRLNVSHRSSA
                     PIYVKPNYYFVMGDNRDNSSDSRFWGLVPKKYIYGKALFRYWPLTSASVIHHEDLAPT
                     GPPGPAPAPNYTRELQEPSPGEENPQRP"
     gene            3069..3386
                     /locus_tag="VGD38_11725"
     CDS             3069..3386
                     /locus_tag="VGD38_11725"
                     /inference="COORDINATES: protein motif:HMM:NF012442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEY0728733.1"
                     /translation="MIKLDIINRVADKTGVPKMKAEQAVEALFHSMKEALTRGERIEL
                     RGFGVFVVKPRKRGVGRNPRTGEEVAIPSGKTIRFKPGKELQAHDGGDTVIDDDTGDD
                     DDF"
BASE COUNT          755 a         1007 c         1013 g          729 t
ORIGIN      
        1 cacgagcttg aacgttgaac cgccaaaggc gcgtccgagt agctggtgtc caaaacagat
       61 cccaaacatc ggcacctgcg cttgcaacag tgagcgaatc tcttcgacct ctttgttcat
      121 cgacgccgga tcgcctggtc cattcgacag gaaaattccg tcgggcttca ttgccagcac
      181 gtcggcggca ggtgttgaag ccggtacgac ggtggtgcga actccgagtt cggcgagctc
      241 gcgcagtgaa ttgcgtttca cgccgaagtc gtaacagata acgtgaaagc gctcttcgcc
      301 ttttgcggaa aactcgtaag gctcttttgt cgtgacgacg ctcgccagct cacgattctc
      361 catcggcggc gactgccgtg ctttctcaac cacactcgct tcgtcgagat cgactgtgga
      421 aagacacgcg cgcatcgcgc ccttgtcgcg aatgtggcgc acgagcgctc gcgtgtcgat
      481 gccttcgatc gcgacgatgt tccagcgttt caaatacgaa gcgagactct cctcggcgcg
      541 ccagttggaa gtgatccggc tcgcttcacg cactacaaaa ccctcgaccc acgggcgcga
      601 cgactcggcg tcttcttcgt tgacgccgta gttgccgatg aggggatacg tcatgcagac
      661 gatctgtccg gcgtaggacg gatcggttag cacctcctgg taacccgtca tcgacgtgtt
      721 gaaaaccatt tcgccgcacg cttcgccttc ggcgccccac gaggtgccgc gaaacgtacg
      781 tccatcttcg agcgctaaga gggctggaat cttgcttgac atgtgagttt actgactgcc
      841 tttgatgaat tgctgcgctt cattcaacca acgcttgctt gcgcgatact tgtacgccgg
      901 agcggttttc acggcctcga tacaggcttg catgaggttg gtcgcttcgc gtttgtgacc
      961 gagaccggcg tgggcgcggc ccatcagata aagcccttcg ggatcagacg gacgatgttc
     1021 gagaaactgc tccaacgcgt ttcgcgcatc ttcgtattgg cctgccgcga tgtaagtcgc
     1081 cgctacttcg cgccagatct cgtgctgcga gtgcgcggga tcgcgcgtca cgacgtgctc
     1141 gaaattctga atcgcgtcgg agtaacgttt ctgctgccgc gcgatgcggc ccaactggta
     1201 actcgcgtcg atctcgccat cgtcgatctg aagtgcgcgt tcgaaacgtt cgcgagcctg
     1261 atcgagctcg ccgcggttct gatgaatcaa gccgagattg taatgcgctg aagcgtccgc
     1321 cggattcagc gtggcggatt cgaggttctg tttgaatgct gccttcgcgc gatgcgtgcc
     1381 catgatgtcg ctgaagtagc cgcgcagcaa catgaagagc aggattatca ggaaaggtga
     1441 accgagcacg ccggagaaga gccacgcggc ggtcggagcg acgaacatcg ctgccactgc
     1501 cgagatgatc gagatcccca aagcgcgcag gaacgacgtg cgaaacacgt ctctcactcc
     1561 gaacacggtg ccgatcgaga acaacacgag cttgggcatt acaaacaagt tctgcgcgac
     1621 aagcgcggga ttcttgagtt gttctgccgc caggtcgact tcggccgtgt tgccaaacat
     1681 ccgttgcagc atcgcgcgcg attgctcgga gttctgaatc atcgccgcga cttgctggtc
     1741 ctgaagacct gaatagtgaa atacgacagc aatcagaatc gaaatgacgt ttgcgacggt
     1801 caacacgtag aacatcgtcg ccgcgaccgg cgcgtactcc tgtgtgatca ccacacgaaa
     1861 actgccgcgc cgctcgaacg tattcgccac gagcgtgagt atcggcacga gcaccaccgc
     1921 caccagcaca acgataaggg ccgcgttgaa cagttcggaa aatatccggc cgccgtatcc
     1981 gacaccagaa aacttatcgg tcagatagct gtaggccgcc tgagcgataa acgcgaggaa
     2041 cgcaaccggc gcgagcgact gttcgcggac ttcacgcatc ccgcgcaagg gggcgtaaaa
     2101 gatcatgagc aggagacgca gccagttagt catatcaagt cgatgttcag ggccgttgcg
     2161 ggttttcctc gcccggcgat ggttcctgaa gctctcgggt gtaattcggc gcgggcgccg
     2221 gccccggcgg gcccgtaggc gcgagatcct cgtggtgaat cacgctcgcg gacgtcagcg
     2281 gccagtagcg aaagagcgct ttgccgtaaa tgtacttctt gggcaccaat ccccagaaac
     2341 gcgaatcgct cgagttgtcg cgattgtcgc ccatcacaaa gtagtagttt ggctttacgt
     2401 aaatcggcgc ggaactgcga tgcgaaacgt tcagacgcgg atcgagatag cgctcctcga
     2461 cgtcgcgtcc attaacgcgc acgacgcctt cgtgtacctc gatggtgtcg cccggtaaac
     2521 cgatcacgcg tttgatgtaa ctctttgaag gatcttctgg ataccagaag acgacgatgt
     2581 cgccgcgatc cacctttggc gcccagcgaa actcgtcgta gtagatcagc ttgttgacga
     2641 agatgcgctc gccgtcgtgc agacgcggca gcatcgaagt gccttccact ttcaccggct
     2701 gcaccacaaa gacgaccacc agcgccgcga tcatcaacgc gaagatcagg tcgcgcaaca
     2761 gcaggcgcgc ttcggaccac aggtcgttgc gctgcgcctg ttccggcttc tgaacctgga
     2821 tgtctttgtc gtcgtcgacg tgcacaccgc caaacggcgg cggacggcgt ttgctaattc
     2881 cgaacatagc catgcaaaaa gtagctttcg ctttgacgct tgtcaaacta gcattttgga
     2941 ccggatcctc cgggaaaagg tttccttgac agggtttact tgcgctctct atcatcctcg
     3001 cctgcgattt gcagcccaga catccggccc aatagtatta gaggctcgga cggaaaagag
     3061 gcttccaggt gatcaagctc gacataatca atcgcgtggc cgacaaaacg ggcgtgccga
     3121 agatgaaggc cgaacaagcc gttgaggcgc tctttcattc gatgaaagag gcgctgacca
     3181 ggggcgagcg catcgagctg cgaggttttg gcgtttttgt agtgaaacca cgcaagcgtg
     3241 gtgtcggcag aaacccgcgt accggcgaag aggttgcgat tccgtcgggc aagacgattc
     3301 gcttcaaacc cggcaaggag cttcaggccc acgacggtgg cgacaccgtg atcgacgacg
     3361 acacgggcga cgacgacgat ttttagtgtt gtatctcaat tacggcgttt ggtttcagag
     3421 gctagagatg gacacgcgag agcatccaga ctctagcctt taagcttcta aagagcacgt
     3481 tttatggctg agtcgtttcg agca
//
LOCUS       DASWTX010000777         1687 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_295797, whole genome shotgun sequence.
ACCESSION   DASWTX010000777 DASWTX010000000
VERSION     DASWTX010000777.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1687
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295797"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1687
                     /locus_tag="VGD38_11730"
     CDS             <1..>1687
                     /locus_tag="VGD38_11730"
                     /inference="COORDINATES: protein motif:HMM:NF013957.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MG2 domain-containing protein"
                     /protein_id="HEY0728734.1"
                     /translation="SASDLRWVEFRLADTLWRSQAATQTADTTKFETAQKQLEQLIRV
                     VEKDEDRDLVWAEAHESLADLFWTSRTHMNWSSAWPHYQQALDWWAGQRDLDRARARY
                     LKMVFKAAHPRSDGYYYYTYYGNYIPIDVLENALKISNTANEQSHLHFLIAMTMRYTA
                     GDYSSRQRVPDEFEDALAGGRQTDWYDDALYHYADWLNNNGTLRQLEDGQWQQQPDYV
                     KALELYRRLTSEFRKGETPYFDQAQEQIKNITAATVSVGVSNIFLPGSEIQFGLTTRN
                     VRRVDFALYKFDMTRDIRFSRTGDADEGDMEPETWLQKLPIAGRAPVKAWSRPIENSE
                     SHQQHSVQVRVDGQLPAGAYLLEARSGTLSARDIILVSDATLVIKSSAKQALAYFVDA
                     VTGAPIPNANVALWESYYQSDRWLWRRLRQTTGADGLARFTLNASSSSNQLFATAAIN
                     ERQAFAASYSYRPGAQGDEWRIYAFTDRPAYRPKETMQWKFIARRRGAENYSTPAGQV
                     VEYQINDPRGTKVTEGKATLNAFGSAWGSLELGEQLPLGEYQVQFWTQGRTHSI"
BASE COUNT          380 a          496 c          487 g          324 t
ORIGIN      
        1 gagcgcgagc gatctgcgct gggtcgaatt tcgtctggcc gacacgttgt ggcgctcgca
       61 ggcggcaacg caaactgccg acacgacgaa gtttgaaact gcgcagaagc aactcgaaca
      121 actcattcgc gtcgtcgaaa aggacgagga tcgcgatctc gtttgggctg aagcacacga
      181 gtcgctggct gatttattct ggacgtcccg cacgcatatg aactggagct cagcctggcc
      241 gcactaccag caggcgctcg attggtgggc cggccagcgc gatctcgatc gcgcgcgtgc
      301 gcgttatctc aagatggttt tcaaagccgc tcatccgcgt tctgacggct attactatta
      361 cacctactac ggcaattaca ttcccatcga cgttctcgaa aacgcgctga agatcagcaa
      421 caccgcaaac gagcagtcgc accttcattt cctgatcgcg atgacgatgc gctacaccgc
      481 cggcgactat tcatcgcgcc agcgtgtgcc ggatgaattt gaagacgcac tcgccggcgg
      541 ccggcaaacg gattggtacg acgacgcgct ctatcattac gccgactggc tgaacaacaa
      601 cggcacgctg cgtcagctcg aagacggcca atggcagcaa caacctgact atgtgaaagc
      661 gctggagctc tatcgccgcc tcacgagcga gtttcgcaaa ggcgagacgc cgtatttcga
      721 ccaggcacag gagcagatca aaaacatcac cgcggcgact gtcagtgtcg gcgtgtcgaa
      781 catctttctg cccggctccg agattcaatt cggtttgacc acacgcaacg tgcggcgtgt
      841 ggatttcgcg ctctacaagt tcgacatgac gcgcgacata cgtttcagcc gaacgggcga
      901 cgcagacgaa ggcgacatgg agcctgaaac gtggctgcaa aaactcccca tcgccggacg
      961 ggcgcctgtg aaggcgtggt ccaggcccat cgagaacagt gagtcgcatc aacaacacag
     1021 cgtacaggtg cgcgtcgacg gtcaacttcc cgcaggcgcg tatcttctcg aagcaagaag
     1081 cggaacgctt tcggcgcgcg acatcattct cgtttccgac gcgacgctgg tgatcaagtc
     1141 ctcggcgaaa caagcgctcg cgtatttcgt cgacgccgtt accggtgcgc cgatcccaaa
     1201 tgcaaacgtt gcgttgtggg agagttatta ccaatccgat agatggctct ggcggcgttt
     1261 acgacagact accggcgccg acggtctcgc gcgtttcact ctcaacgcat ccagcagttc
     1321 gaaccaactc ttcgccactg ccgcgatcaa cgagcgacag gcttttgcgg caagctattc
     1381 ctacaggccc ggcgcgcaag gagacgagtg gcgcatttac gcgtttacgg atcgacccgc
     1441 gtatcgtccc aaagagacga tgcagtggaa gttcatcgcc cggcgtcgtg gcgccgaaaa
     1501 ctattcgaca cctgcgggtc aggttgtcga gtatcagatc aacgatccgc gcggcacgaa
     1561 agtcaccgaa ggaaaggcga cgttgaatgc gttcggcagt gcgtggggat cgctcgagtt
     1621 gggtgagcag ttaccgctcg gcgaatatca ggtgcagttt tggacgcagg ggcgtactca
     1681 tagcatc
//
LOCUS       DASWTX010000778         3405 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_119567, whole genome shotgun sequence.
ACCESSION   DASWTX010000778 DASWTX010000000
VERSION     DASWTX010000778.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3405)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3405)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3405
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119567"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..802)
                     /locus_tag="VGD38_11735"
     CDS             complement(<1..802)
                     /locus_tag="VGD38_11735"
                     /inference="COORDINATES: protein motif:HMM:NF014336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S1/P1 nuclease"
                     /protein_id="HEY0728735.1"
                     /translation="MRKIVPLLLTICLFSTHALAYGPRGHKLVGSIADKRLARNSAVA
                     KKVRQLLDGLTLEQVATLPDNIKGWDDCRGNGNDDPVTSRPRINEELRAFWQANKCGK
                     KPSHDIFHYTDVPVTGDENYGDGSIGRDEFDVVKMIPFCIGVLRGEIPETNDRAITKA
                     VAVILLTHYIGDIHQPLHVGAEYFNADGDAFHPSNGDKFFGDQGGNKLILFTFMDGTL
                     KSAGKLHSYWDGQTVKNAFGETDALDPNSAKRLARLKPAGWELDGGIET"
     gene            987..2150
                     /gene="alr"
                     /locus_tag="VGD38_11740"
     CDS             987..2150
                     /gene="alr"
                     /locus_tag="VGD38_11740"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008784 - alanine racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEY0728736.1"
                     /translation="MSRLQDAHNNLSGRPTWAEIDLNRLAANFKQIKQRVGSTARVMA
                     VVKANAYGHGAVECARRLAAEGADWFGVALPEEAIQLREAGIKQPVLCLAGFWPGQAA
                     ACIQYQLTPVVYRRDMLEALNQAATEAGVIADVHVKVDTGMGRLGVRFDQLSEFAARL
                     DQFRNVRIDGLMTHLAAADDASCRPLTLDQIHRFDEAVSVFREHGYRPTHLHLANSAG
                     VFGHRESWGNMVRPGGVLYGLWRDVLPMTVSDPQLVAVMSLYSRIIMLKWVPPGETIG
                     YGCTFEASRRSLIATLPIGYHDGYMRGLSNRSHVIVRGTYAPVVGRISMDLTLIDVTD
                     VAGVELHDEVTLLGWDRRNADLRIRAEDLARIAGTLSYEVTCGIGDRVSRNYL"
     gene            2150..2617
                     /locus_tag="VGD38_11745"
     CDS             2150..2617
                     /locus_tag="VGD38_11745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728737.1"
                     /translation="MTCRILLALLVLISAASGRQFANAQADLKPTNCENHIKMLEGAN
                     DVAGKDGLIILIARPGTGDTKPEISGRRLYSARAYLTDYLRVRSPETIVIGEGDRVEG
                     YGRLEIYVAGKLYQALAIRANSELSVGSCEPEDLDDATQRARRRKLYPWLYKN"
     gene            2715..>3405
                     /locus_tag="VGD38_11750"
     CDS             2715..>3405
                     /locus_tag="VGD38_11750"
                     /inference="COORDINATES: protein motif:HMM:NF045022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysM domain-containing protein"
                     /protein_id="HEY0728738.1"
                     /translation="MTYTVKAGDTLSKIAAQNGLTLAQILQANPQISDPNRINVGDIV
                     NLPNGSPAESATKPLPSNPVVSNPVPPISTENTQPLPSNPVTSTGAIGTALADELGVL
                     SAKYETGGRGPGTVSTGAGDPGGVSYGSYQMASKMGVVQRFVAQAGFQWADDFKGLTA
                     GTAPFTAVWKKIATEQTDAFQKAQHDFIKRSHYDPLASKVLADNKVDVNTRSFAVQNV
                     IWSTAVQHGGAT"
BASE COUNT          718 a          932 c          998 g          757 t
ORIGIN      
        1 aagtttcaat gccgccgtcc aattcccaac ccgccggttt aagccgcgct aaccgtttcg
       61 cagagttcgg atctaacgca tccgtctcac caaacgcgtt cttcacagtc tgaccatccc
      121 agtagctgtg aagctttccg gcagacttga gcgtgccatc catgaacgtg aacaagatca
      181 gtttgttgcc gccctgatcg ccaaagaatt tgtcaccatt agaaggatga aacgcatctc
      241 cgtcggcgtt gaagtactcg gcgccaacgt gaagcggttg atgaatgtcg ccgatatagt
      301 gcgtaagcag gatcacggcg acagctttcg tgatcgcgcg atcgtttgtt tccggtattt
      361 cgccgcgtag gacgccgatg cagaacggaa tcatcttcac gacatcaaac tcgtcgcgtc
      421 caattgatcc gtcgccatag ttttcatcgc cagtgacggg aacgtcggtg tagtgaaaaa
      481 tatcgtgcga aggcttcttg ccgcatttgt ttgcctgcca gaacgcgcgc agttcttcgt
      541 taattcgtgg cctgctcgtc accgggtcgt cgttcccatt gccacggcaa tcgtcccaac
      601 ccttgatgtt gtcaggcagc gtcgcgactt gttccaacgt aaggccgtcg agcagttggc
      661 ggactttctt cgctactgca ctgttcctgg cgagccgttt atcggcgatg gagccgacta
      721 gcttatgacc gcgtggtcca taggcgagag cgtgagtcga gaaaaggcaa atagtaagta
      781 acagggggac aattttgcgc atctcaattt cgtcctggct gattgtgtgt ccaggatctc
      841 tcctttccgg ggtgggttga aagcggcgag gttcatgagt cgatacgaga cgggctctgg
      901 gcatagcctc gttgggacag cgaagcgagt ttaagaccgg gcaagaagtg gcgtcaatga
      961 attttggtat tgggttaaac taaggtatgt ctcgtttgca ggatgcgcac aacaaccttt
     1021 ccggccggcc aacgtgggcc gaaatcgatc tcaaccgact agcggcaaac ttcaagcaga
     1081 tcaagcagcg tgtcggctcg acggcgcgtg tcatggccgt cgttaaagcg aacgcgtacg
     1141 gtcacggcgc ggtcgaatgc gcgcgccggc tcgcggctga aggcgctgac tggtttggcg
     1201 tcgcacttcc cgaagaagcg attcagttgc gtgaagccgg catcaagcag ccggtgcttt
     1261 gtctcgccgg tttctggccg ggtcaggcgg ctgcgtgtat tcagtatcag ttgactccgg
     1321 ttgtttaccg gcgcgacatg ctcgaagcgc tcaaccaggc ggcaacggaa gcaggcgtga
     1381 tcgcggacgt gcacgtcaaa gtggacacgg gcatgggacg gctcggcgtg cgtttcgacc
     1441 aactcagcga gtttgccgca cggttggacc agtttcgcaa tgtgcgaatc gacggtttga
     1501 tgacgcacct cgccgcggcg gacgatgctt cgtgccgtcc gttaactctc gatcagattc
     1561 atcgttttga cgaagccgta agcgtgtttc gtgagcatgg ctatcgtccg acgcatctgc
     1621 acctcgctaa ctccgcgggt gtgtttggtc atcgcgaatc ctggggaaac atggtgcggc
     1681 ccggtggcgt gttgtatggc ttgtggcgcg acgtgctgcc gatgacggtt tccgatccgc
     1741 agctcgttgc ggtgatgtcg ctctactcgc gcatcatcat gttgaagtgg gtgccgccgg
     1801 gcgagacgat cggttacggc tgcacgttcg aagcctcacg acgcagtctg attgcgacgt
     1861 tgccgatcgg ttatcacgac ggttacatgc gcgggctttc gaatcgttcg catgtgatcg
     1921 tgcgcggaac ttatgcgccc gtagtcggcc gcatctcaat ggatctcacg ttgatcgacg
     1981 taacggacgt cgcgggtgtc gaactacacg acgaagtcac actactcggt tgggatcgac
     2041 gcaacgccga cctgcgcatc cgcgccgaag atctcgcgcg catcgccggc acgctgtcat
     2101 acgaagtgac atgcggcatc ggcgatcgtg tttcaagaaa ttacttataa tgacgtgcag
     2161 aatcctttta gcgttgttgg ttctcatcag tgcggcttcg ggccggcagt ttgcgaacgc
     2221 gcaggcggac ctgaagccga cgaactgtga aaaccatatc aaaatgctcg agggcgcgaa
     2281 tgatgtcgcg ggtaaggacg ggctgatcat cctgatcgcc cgtccgggca ccggcgacac
     2341 caagcccgag attagtgggc gccgtcttta tagtgcgcgc gcctatctca ctgactatct
     2401 gcgcgtgcgt tcgcctgaga ccatcgtcat cggtgaaggc gacagagtcg agggatacgg
     2461 ccggctggag atctatgtcg ccggcaagct gtatcaggca ttggcaatca gggccaactc
     2521 cgaattgtcg gtgggttcgt gcgagcctga agatctggac gacgccacac aaagagcacg
     2581 ccgcaggaaa ctttatccgt ggctctacaa gaattaatcg ttcgagccaa ttagcaaaag
     2641 acctgattga cggcgcctcc gcgcgttgac tactatgcga tccctcgcca aatcgaacgg
     2701 aggtccctcg agaaatgact tatacggtaa aggcaggcga tacgctctcc aaaatcgctg
     2761 ctcagaatgg cctgacgctg gctcagatac ttcaagccaa tcctcagatc tcagatccaa
     2821 acagaattaa cgtcggcgac atcgtgaacc tgcctaacgg ttcacctgcc gagagcgcga
     2881 caaaaccgct cccgagtaat ccggtggttt ctaatccagt gccgccgatt tcgactgaga
     2941 acacacagcc gttgcccagc aacccggtga cttcaaccgg cgcgatcggc accgctttag
     3001 cagacgagct cggagtactt tcagcgaaat acgaaacggg tggccgtggt cccggtacgg
     3061 tctcgaccgg cgcaggcgat cccggcggcg tctcgtacgg ttcgtatcaa atggcgtcga
     3121 agatgggtgt tgttcagcgt ttcgtggctc aagccggctt tcagtgggcc gatgatttca
     3181 aggggcttac ggccggcacc gcgccgttta ccgcggtgtg gaaaaagatt gcgactgagc
     3241 agacagacgc ttttcaaaag gctcagcatg atttcatcaa gcgcagccat tatgatccgc
     3301 tcgcttcaaa agtactcgcg gacaacaagg tcgatgtgaa tacgagaagt tttgcagttc
     3361 aaaacgttat ctggtcgact gccgtccagc acggtggcgc cacgc
//
LOCUS       DASWTX010000779         1555 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_340216, whole genome shotgun sequence.
ACCESSION   DASWTX010000779 DASWTX010000000
VERSION     DASWTX010000779.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1555
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_340216"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..242)
                     /locus_tag="VGD38_11755"
     CDS             complement(<1..242)
                     /locus_tag="VGD38_11755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728739.1"
                     /translation="MGIRGKLLLLAAGIAVPLVVVGALDLRNMWRLSRSQMDDSVKQQ
                     VDLASVALERWLDNQKKALDAIAALAGDQDTATPTIR"
     gene            complement(320..751)
                     /locus_tag="VGD38_11760"
     CDS             complement(320..751)
                     /locus_tag="VGD38_11760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728740.1"
                     /translation="MRSRFIIVIVLLMAVSIVNGQTTVNTPVFTDYRGVSIGMAADDV
                     RAKLDRIKKGDRQDYLVFSEQESAQIYYDDKGKVTAISIDYFGGDGKAPTPEAVLGAG
                     IQAKPDGSMYQLNRYPQAGYWVSYNRTAGEKPVVTITMQKM"
     gene            1132..1416
                     /locus_tag="VGD38_11765"
     CDS             1132..1416
                     /locus_tag="VGD38_11765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728741.1"
                     /translation="MAQLQNTLAAALIDVQRGQYEPARQLTSDFYTDLRRQIDSDTGS
                     VLTSGQREGFRSLLAERDELITLLARSDAAADERLFAVYSTYNKLANNGR"
BASE COUNT          323 a          433 c          435 g          364 t
ORIGIN      
        1 cgaatggtgg gagtggccgt gtcctgatcg ccggccagcg ctgcgatggc gtcgagtgcc
       61 ttcttctgat tgtcgagcca gcgctcgagt gcgactgaag cgagatcgac ttgttgcttc
      121 acggagtcgt ccatttgcga acgactcaac cgccacatgt ttcggagatc gagcgcgcca
      181 acgacaacca gcggcacggc tatcccggca gccagtaaca acaatttgcc gcgaatgccc
      241 aactcccact cctaaggttc gaaagtagta tgaagtatac caacgtacct gcggccatgc
      301 aggggaggga agccggactt cacattttct gcatggtgat tgttaccacg ggcttctcgc
      361 cggcggtgcg gttgtacgac acccagtagc ccgcttgcgg ataacggttc agttgataca
      421 tcgatccgtc cggcttcgcc tggatgccgg ctccgagcac cgcctcgggc gttggcgctt
      481 ttccgtcgcc gccgaagtaa tcgatcgaaa tcgcggtcac tttgcctttg tcgtcgtagt
      541 agatctgcgc agactcctgt tcggagaaaa ccagatagtc ctggcgatct cctttcttga
      601 tccgatcgag ctttgcgcga acgtcgtcag ccgccatgcc gatactgaca ccgcgataat
      661 ctgtaaacac gggcgtgttg acggtagttt gtccgttaac gatagaaacg gccatcaaga
      721 gaacgataac gatgatgaat ctgcttcgca tgtgcactct tccctccaca ttaagttggc
      781 ccaataggcc gcttaatatg gtaaggaagc acgttttcag gatcatcggt ggcaccactt
      841 agagcgtagg tgttatcact gattcgcgtc aggatgactc aggctagcat gtcatcagca
      901 tgctcctttg agctggaccg agagtaaggg gtaatgagag cggtagggca acacgtctct
      961 ggtaagggca gcgttttagg ttcgggaatt actgcgcttg ccatcccctg gaggcgtgtt
     1021 gtcctgttcg caactttggc cctgggtttt tttctcctgg gatttgcgcc catgtggtcg
     1081 aaagccacgc gggcaataga acagcgtgac gcagcacagc gtggcttgcg gttggcacaa
     1141 ttgcaaaaca cgctggctgc agcgctgatc gacgtgcagc gtggtcagta cgaaccagcg
     1201 cgccagctca cgagcgactt ttacacggac ttgcgtcgcc agatcgactc tgacacagga
     1261 tctgtcttga cttccggaca gcgtgaggga tttcgttcct tactcgccga acgcgacgag
     1321 ttgataactc tcttggctcg tagcgacgcc gccgccgacg aacgtctttt cgctgtctac
     1381 tcaacttaca acaagctcgc gaacaacggc cgctgaccgc tctaaaaacg atcgacgtcc
     1441 aagaccgctt gcgcaaatgc ctgcggcgct tcctgtggca ggttgtgacc gatgccgcct
     1501 ttgatcagac ggtgctcgta tttgcctgag aacttctttg cgtagacatt cggat
//
LOCUS       DASWTX010000780         3364 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_247905, whole genome shotgun sequence.
ACCESSION   DASWTX010000780 DASWTX010000000
VERSION     DASWTX010000780.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3364)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3364)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3364
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247905"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..461)
                     /locus_tag="VGD38_11770"
     CDS             complement(<1..461)
                     /locus_tag="VGD38_11770"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HEY0728742.1"
                     /translation="MTRVQQKICQRNLIAAYVDGELSEVAAVIFEQHVEDCAECRAEL
                     RAHRMFVCELDAVMTDKVEIPVPDNFSKMIAVRASSDLRGVRSRAEHRKAIVICVILA
                     LTGFGLLGATARDSIFVLIGKFLTSVASIAGFVWSLLSDAVASLVVITRVLG"
     gene            complement(461..1081)
                     /locus_tag="VGD38_11775"
     CDS             complement(461..1081)
                     /locus_tag="VGD38_11775"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0728743.1"
                     /translation="MKASASSVSPVFSRDLSLVSDRELVAIAIDGFDGSFEELVRRYQ
                     RPISAYVYRMVGNYESALDLTQEIFIKVYNSLNRYRAEFKFSTWIYKIAHNAAVDHLR
                     RTATREQSLVLGPEGDTYDLPLESAHLSPEQESEQKERRGEIEAVVRALPANYRELII
                     LRHSQDLSYEEIVEVTGLPLGTVKNRLFRAREMMRQQFVDKGITGI"
     gene            complement(1153..2097)
                     /locus_tag="VGD38_11780"
     CDS             complement(1153..2097)
                     /locus_tag="VGD38_11780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728744.1"
                     /translation="MSNLFSRIVDPWYPPAAIGLEKGLASVVQLERVKGNACRLKRAA
                     TANIAESLITPSFDQPNIADPGQLAAILNDLAASAGLLRQKRWSLSLPEATARTIVFT
                     METHSSGSELQDVLRWKIERGFGASLEELSVSRERLQKDAQGRDRYLTIGVRKSVLAE
                     YEAVLESLGWRAGLILPRHLGEAQWLVRNGSAGDSLLVSGSSQGFTGLIFRGRHPLIL
                     RTVSCAEGEFEDEFYRFLLFYRDRNIPETAGDYLPLTRLMVIGEGITKERAGEIVNET
                     TGGDLRPLGAEDLGLQLPSRDFSFDSIAAPAGLATLSW"
     gene            complement(2112..2528)
                     /locus_tag="VGD38_11785"
     CDS             complement(2112..2528)
                     /locus_tag="VGD38_11785"
                     /inference="COORDINATES: protein motif:HMM:TIGR02532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEY0728745.1"
                     /translation="MTGSMRQLRSRLAARAGFTLLELMIVISIIIILAAITLPQYQKT
                     IMHTRESVLRDDLFKMRSLIDQFAADKGRLPQSLDELVSEGYIRDIPLDPFTGQKDWA
                     VTTGEDPNSLDGQQGITDVHSSSAEVSSEGTPYSQW"
     gene            complement(2518..3153)
                     /locus_tag="VGD38_11790"
     CDS             complement(2518..3153)
                     /locus_tag="VGD38_11790"
                     /inference="COORDINATES: protein motif:HMM:TIGR02532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HEY0728746.1"
                     /translation="MKKEQRQQQGFSLIELVITVTVLTILTLGAMPLVKVSVKRQREQ
                     QLRDALRQMRIAIDEFHRDSIGMNCTGTGIQAGGSGGGLAPPPVGMIDPRSKVVISDC
                     TIFGVDNPDHYPPDLDTLVSGVNVMPRGVGPTGGIGNPNVKATEVGQLSTKQKVYLRA
                     IPIDPMTGKADWDFRSSYDAADSGSWGGENVFDVRSKSKETALNGEKYSDW"
BASE COUNT          682 a         1017 c          960 g          705 t
ORIGIN      
        1 cccaacaccc tggtgatcac gaccaggctc gcgacagcgt cagataaaag actccatacg
       61 aagccggcga tgctggccac gctcgtcagg aacttgccga tcagcacgaa gatcgaatcg
      121 cgcgcggtcg cgccgagtaa accaaatccg gttaaagcaa ggattacaca gatgacgatg
      181 gccttccggt gttcggccct gcttcgcacg ccacgcagat cgctgctggc ccgaaccgcg
      241 atcatcttcg agaagttatc gggcaccgga atctcgacct tgtcagtcat gaccgcgtcg
      301 agctcgcaaa caaacatccg gtgcgcgcgc agctccgcgc ggcactccgc acaatcttcc
      361 acgtgctgct cgaatatcac tgccgcgacc tcgctcaatt cgccgtcgac gtaagcagcg
      421 atcaaatttc tctgacagat cttttgctgg accctggtca ttaaatgccg gtgattcctt
      481 tatcgacaaa ctgctggcgc atcatttcgc gcgcgcgaaa gagacggttc ttgacggtgc
      541 cgagtgggag gccggtgact tcgacgattt cttcgtaact gaggtcttgg gagtgacgca
      601 gaatgatgag ctcgcgatag ttcgcgggga gcgctcgtac gactgcttcg atctcgccgc
      661 gacgttcttt ttgttcgctc tcctgttcgg ggctcaggtg cgcgctctcg agtggcaggt
      721 cgtaagtgtc gccttcggga cccagaacaa gggattgctc tcgagtcgcc gtgcgtctga
      781 ggtgatcgac ggctgcgttg tgggcgatct tgtaaatcca ggtggagaat ttgaattcgg
      841 cccggtagcg gttcagggag ttgtagacct tgatgaagat ctcctgggtc aggtcgaggg
      901 ccgactcgta attgcccacc atgcggtaca cgtaggccga gatcggacgc tggtaacgcc
      961 gcacgagctc ttcgaagctg ccgtcgaagc cgtcgatggc gatagcgacg agttcgcggt
     1021 cgctgaccag gctcagatct cgtgaaaata cgggggaaac ggacgaagcg gaagctttca
     1081 tgataccggg gttttacgtc tcggccagcg ggtttgtttc aagtgtaggt cctataggac
     1141 ttacaggacc tattaccacg aaagcgtcgc gaggccggcg ggggcggcga tggagtcgaa
     1201 actgaagtcg cggctgggta actgcaaccc taaatcctcg gcgcccaggg gacgcagatc
     1261 gccgccggtg gtctcgttca cgatctcgcc ggcgcgttct ttggtgatgc cttcgccgat
     1321 gaccatcagc cgcgtcagcg gcaggtagtc gccggccgtt tcgggaatgt tgcggtcgcg
     1381 gtagaacaac aaaaaccggt agaactcgtc ttcaaactcg ccctcggcgc agctcaccgt
     1441 gcgcagaatc agcggatgcc ggccgcgaaa gatgagaccc gtaaatccct gactcgatcc
     1501 gcttaccaac aacgagtcgc ctgcggagcc gttgcgcacg agccactgtg cttcacccaa
     1561 gtgtcgcggc aggatcagtc ccgctcgcca gcccaacgat tcgagcaccg cctcgtactc
     1621 agccagcacc gacttcctga cgccgatcgt gagataacga tctcttccct gcgcgtcctt
     1681 ctgcaaacgt tcgcgcgaga ctgacaactc ttccagtgac gcgccgaagc cgcgctcgat
     1741 cttccatctc agcacgtcct gaagctcgct acccgacgaa tgcgtctcca tcgtgaaaac
     1801 gatcgtgcgc gcggtggctt ccggcaagct caacgaccag cgcttctgcc gcagcaatcc
     1861 cgcgctggca gcaaggtcgt tcagaatcgc agccagttgt ccgggatccg cgatgttggg
     1921 ttgatcgaaa ctcggcgtga ttaacgactc ggcgatgttg gcggtggcgg cgcgtttcaa
     1981 acggcatgca ttgcctttga cgcgttcgag ctgaaccacg gacgcgaggc ctttttcgag
     2041 gccgatggcg gccggcggat accacggatc tacgatgcgt gaaaaaaggt tagacatcta
     2101 tcttgcgaaa ctcaccactg gctgtaaggc gtgccttcac tggaaacttc agcggaactg
     2161 ctgtgcacgt cagtgatgcc ttgttgaccg tccaatgaat tcggatcttc acccgtcgtg
     2221 acggcccagt ctttctgtcc cgtaaacgga tcgagcggga tgtcgcgaat gtaaccctcg
     2281 ctcacgagct cgtcgagcga ctgcggcagc cggcccttgt cagccgcaaa ctgatcgatc
     2341 agcgaacgca tcttgaacag gtcatcgcgc aacaccgact cgcgcgtgtg catgatcgtc
     2401 ttctgatact gcggcaacgt gatcgcggcg agaatgatga tgatcgaaat cacgatcatc
     2461 aactcgagca gcgtgaatcc cgcgcgcgcg gccaatctgc ttcgcaactg tcgcatacta
     2521 ccagtcactg tacttctctc cattcaaagc tgtctctttc gatttggaac gcacgtcgaa
     2581 aacgttctca ccgccccacg aacccgagtc agcagcgtcg taactcgagc ggaagtccca
     2641 atcggcttta cccgtcatcg gatcgatcgg tatcgcgcgc aggtaaacct tctgcttggt
     2701 ggacagttgg cccacctcgg ttgccttcac gttcgggttc ccgattccgc cagtaggacc
     2761 aacgccgcgc ggcatcacgt tcacaccgct gaccagcgtg tcgaggtccg gcggataatg
     2821 atcgggatta tcaacgccaa agatcgtgca gtcgctgata acgactttac tgcgcgggtc
     2881 gatcatgccg accggcggcg gcgcaagacc accaccactg cctccggcct ggatgcccgt
     2941 gccggtacaa ttcatgccaa tcgagtcccg atgaaactcg tcgatcgcga tacgcatctg
     3001 gcgcaacgcg tcgcgcagtt gctgctctct ctggcgcttc acggaaacct tcacgagcgg
     3061 catcgcgccg agcgtaagga tggtcaacac cgtgacggtg attaccagtt cgatcagtga
     3121 aaatccttgt tgctgtctct gctctttctt catgggccaa gccttcagaa gaatgcggcg
     3181 accggtagat atacaactcc gtcatccagt cgccgcgttt tatcgcgtcc tgccgtgcgg
     3241 cagaaacgtc aatgcttcac tgttgctgtt ccctgaacga tctccgaggt cacgtcgcga
     3301 gcgtcgctgg ccacgaggtg cagcgtctcc ttcaagagcg cgagcgctgt gtctccggcg
     3361 gcga
//
LOCUS       DASWTX010000781         1925 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_421717, whole genome shotgun sequence.
ACCESSION   DASWTX010000781 DASWTX010000000
VERSION     DASWTX010000781.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1925)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1925)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1925
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421717"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..494
                     /locus_tag="VGD38_11795"
     CDS             <1..494
                     /locus_tag="VGD38_11795"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY0728747.1"
                     /translation="NPENNPFYRIVASPIVHSEVIYVPTRVKPLLALRAGGRGDVTSS
                     HVLWSTVNGPDVPTPVTDGKYFYVINDRGIVWCLDAKTGAEIYAQQRIKPGTYSASPV
                     LADGKIYITNEDGLTTVIAAGPKFEVLAENALNDYTLSSPAISDGRIYIRTSGFLYSI
                     GKK"
     gene            497..>1925
                     /locus_tag="VGD38_11800"
     CDS             497..>1925
                     /locus_tag="VGD38_11800"
                     /inference="COORDINATES: protein motif:HMM:NF019339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728748.1"
                     /translation="MLRSIVLTLVVVVTVHAQESQLGRVEFQTSGSPAAQAHFLRGLA
                     ALHSFWYEEALEAFRESTKADPDFMMGYWGEAMAQNHPLWSEQDLNAAKLVVAKFKDM
                     PKLSDRERAYLNAVKLLYGEGDKRARDAAYSAAMEKIYRAYPEDLDAAAFYSLSLLGL
                     VGPDNKGYRLQAQAGAIALAVYEKNPNHPGAAHYIIHAFDDPDHAILALPAARRYADI
                     APEAHHARHMPSHIFLQLGMWPEAAASNESAWESSDNWMKRKKLSLSVRDYHSLHWLL
                     YAYLQQGRYSKAESLLKLMKQVMSESTYDNKLRPGYYENNYANMAAAFIIETERWELA
                     TELFPPTNPQNPSPQTPASGSHGSHGGSSDTVRYSGASRTLPAFARAFSAVIRGAEAE
                     PLDGIRGLEVAALSAAMKKDYAKATELMKQATAQEEQSSPPSGPPSLIKPTHELFGEI
                     LLRAGKPAEALAQFKTALLRQPNRAR"
BASE COUNT          421 a          570 c          548 g          386 t
ORIGIN      
        1 tgaatcccga aaataatccg ttctaccgca tcgttgcttc gccgatcgtt cacagcgagg
       61 tcatctatgt tccgacgcgt gtgaagccgt tgctggcgtt acgcgcaggc ggacgcggcg
      121 acgtcaccag ttcgcacgtg ctctggtcca ccgtgaacgg cccggatgtt ccgacacccg
      181 tcaccgatgg gaagtatttc tacgtcatca atgatcgcgg catcgtgtgg tgtctcgacg
      241 cgaaaacggg cgccgagatc tacgcgcagc aacgcatcaa acccggcacc tacagtgctt
      301 cgcccgtact ggccgacggc aagatctaca tcacgaacga agacggactg acaaccgtga
      361 tcgccgctgg tccaaagttt gaagtgctcg cggagaacgc gctcaacgat tacacgctga
      421 gctcgcccgc gatctccgac ggacgcatct acattcgcac gtccggtttt ctctacagca
      481 tcggtaaaaa ataactatgc ttcgctcaat agttctaacg cttgtggttg tcgttactgt
      541 ccacgcgcag gagtcgcaac tcggccgcgt tgagtttcag acgtccggct cgccggccgc
      601 gcaggcgcac ttcctgcgcg gtctcgcggc gcttcattct ttctggtacg aagaagcgct
      661 cgaggctttt cgcgagtcga cgaaagccga tccggatttc atgatgggtt actggggcga
      721 agcgatggcc cagaatcatc cgttgtggtc ggaacaggat ctcaacgctg ccaagttggt
      781 tgtcgcgaag ttcaaagaca tgccaaagct gagcgatcgc gagcgcgctt acctgaacgc
      841 cgtgaaacta ctctacggcg aaggcgacaa acgcgcgcgc gatgcggcgt actccgcggc
      901 gatggagaag atctatcgcg cgtatccgga agatctcgac gcggcggcgt tctattcgtt
      961 gtcgctgctc ggtctcgtcg gtccggataa caaaggttat cggttgcagg cccaggcggg
     1021 agcgatcgcg ctcgctgttt acgagaagaa cccgaaccat ccgggcgcgg cgcattacat
     1081 cattcacgcc tttgacgatc ccgatcacgc gattctcgcg ttgccggcgg cacgccgtta
     1141 tgcagacatc gcgcctgaag cgcatcacgc gcgtcacatg ccgtcgcaca tctttttgca
     1201 gttgggaatg tggcccgaag ctgcggcgtc gaacgaatca gcgtgggagt cgtccgacaa
     1261 ctggatgaag cgcaagaagc tctcgctgag cgtgcgcgac tatcacagtc tgcattggct
     1321 gctctacgcc tatttgcaac aaggccgata cagcaaagca gaaagcttat taaagctgat
     1381 gaagcaggtg atgtcggaat cgacttacga caacaagctg cggcctggtt attacgagaa
     1441 caattacgcg aacatggccg ccgcgttcat tatcgaaaca gaacgctggg aactcgctac
     1501 tgaactattc cctcctacca atccccaaaa tccctctccg caaacgccgg cgagtggaag
     1561 tcacgggagt cacggcggaa gttccgacac cgtgcgttat tccggcgcga gccgcacttt
     1621 acctgcgttc gcccgtgctt tttctgctgt tatccggggc gctgaggccg agccgctcga
     1681 tggcattcga ggcttagaag tggcagcact gagcgcggcg atgaaaaagg attacgcgaa
     1741 ggctaccgag ttgatgaaac aggcgaccgc gcaagaagag caatcgagtc cgccgtcggg
     1801 accgccgtca ctcatcaaac caacacacga actcttcggc gagattctcc tgcgcgcggg
     1861 caaaccagcc gaggcgctgg cgcagttcaa aacagctctg ttgcggcaac ccaatcgcgc
     1921 gcgtt
//
LOCUS       DASWTX010000782         6817 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_164230, whole genome shotgun sequence.
ACCESSION   DASWTX010000782 DASWTX010000000
VERSION     DASWTX010000782.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6817
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164230"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            218..2233
                     /locus_tag="VGD38_11805"
     CDS             218..2233
                     /locus_tag="VGD38_11805"
                     /inference="COORDINATES: protein motif:HMM:NF025010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEY0728749.1"
                     /translation="MLKQLGRLERTRNIVILGFAVLMAVSLIFFYAPGRTASSIDPTK
                     NTESVAKVGSDHITVAELARRRESMMQAYGPQLASIGGSRIFLDGLIKSRVIEQEAAR
                     LGLGATDGELKERLVKQFSDASGQFVGYDRYKESVVARYGDVESFEKEMRNIIAQEKL
                     RAFVTASINISDDEVREEFKRRNTSFDVNYVSLTADKLAAKIQPSDEEMRSYFESHKT
                     EYRYLEPQRKVRYVFINIEKAGSKLNISDADLKANFDGLDPKYKEAGVKIQQIMLKVA
                     RPDLDAQVEQKAKDLIAKLTGGGRTATEEAFAEAARGNSEDPATARNNGYLAAPFKQN
                     TNKPHGLYDRAVTMQVGEVSDIPTRYAGNWYILRRGDSVPKTFEQAKPELLVSARNQR
                     GYGVALELAKRAAARLKETKDPQKVAQEFAAEANMTPAEMVRETGYVKPGDEVQDIGA
                     NQQFEQELAKLNNPNDVADQVGVKDGFAIPMLVDKKEPRIPEFDEVKTKVADAIKQQR
                     AKEQLEQKAKDLIAGLSGPNAVKAAGEKDGYDAGFEEGFKLSSSLGKAGTSTALDDVI
                     YGLKEGEYSKTPIKVDDKWVVVGVVKRTEPDFKAFNEGERDRLKQQLLGARESQVFED
                     YIAKVQEKMKQDGKIEIYEDVLKELDEVQAASAPEPALPPGFNFPTK"
     gene            complement(2306..3313)
                     /locus_tag="VGD38_11810"
     CDS             complement(2306..3313)
                     /locus_tag="VGD38_11810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728750.1"
                     /translation="MKIKFINLAIVVLALCAAQALAQTRARNNAPARTGLLASLPESD
                     AVAQVKMRQLLSEAMPRILASNPAKLAEVNASIDAFKGRTGLDPRMFEQIALGVRFTF
                     PSEGVTKTQTIALANGTFSPAAMVAAGRVASNGAYREEKYQGKTIYIFKLDQNIRLLG
                     MFDVRIAELAAAPLDANVLALGDPAGVQAAIDATRSRKNANAELIALANRDPNAIIGF
                     GSNISEQLIRNVDFGNAPIAADLSKLKQVYGSVGSTERDLELFLAARAVNADAAKNLG
                     DTIEGLKQFGALFVGRISGAKGVLAKSALANMKIVTAANELQIRTAVPQADVGPLMGG
                     N"
     gene            complement(3421..4149)
                     /locus_tag="VGD38_11815"
     CDS             complement(3421..4149)
                     /locus_tag="VGD38_11815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728751.1"
                     /translation="MLSRRKLQLLASLSAALITLSCAPNQKVATESNTNETVVSSTPP
                     FQTKEPERYQARRTITTVTANGETTVTKNIVARDGELRRDETELWQQRVVYLYLPEGR
                     FLLVPDEKVFVDLTKTDGAATPGIYDESESSPDRLLHTDPLSTTYQQIATETVNGRTA
                     QKYRVVVNSSAAANVSVNETLIWIDEALHMPVKSETTSGDGKRVTMELTDITLNVDRT
                     VFQIPEGYEKITILDLPKRLKVSE"
     gene            complement(4149..5330)
                     /locus_tag="VGD38_11820"
     CDS             complement(4149..5330)
                     /locus_tag="VGD38_11820"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016293398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HEY0728752.1"
                     /translation="MKNVFLAGAVRTPIGKFGGTLQSWTAADMGVAVAKEALRRANVA
                     PDQVDDSIWGCARQAGGGPNVARQITFRAGVPDTVPAFTVNQACGSGIKAIILAAQEI
                     MLGRADAVLAGGTESMSRVPYFAEGARWGMRMGNMQLVDGMYRDGFNDPLSGLMMGQT
                     AEKLARQYEISRQEQDEFALRSQQKAEAAINSGRFKDEVMALEIAGRKNETTSFAKDE
                     HCRAGTTLADLAKLPPVFYKDGSVTAGNSSGITDGASALVVLSEAGLKRAGVKAQARI
                     VDYEISGVAPDIMGIGPVPAVRALLARQNLTLDQIDLIELNEAFAAQVVACDRELGFD
                     PERVNVNGGAIALGHPIGCTGVRITTTLVHEMQKREAKLGLATLCVSGGMGLALLLER
                     V"
     gene            5694..>6817
                     /locus_tag="VGD38_11825"
     CDS             5694..>6817
                     /locus_tag="VGD38_11825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728753.1"
                     /translation="MFETLTSLASIEAARRQIADLFRQHTEWFCTAGRGETYGLRREE
                     MDVSVAHGRLMLSCWTEKGSRSWRILAWEWNGQMLLLQASRRFGAELPLIELVPRASA
                     LAVAATIRAARQLRCDKLARLACAAQPETRIERCALNQGTRPSQPGRYARIILHRKRT
                     RIAVSGPVVASQPSSVDAFLSSTLLWFKRTADRAKAPYFEQLWLIISNELLKPLLYRV
                     ALLRQSLRDQIRVFVVDKDLATLTPAQPLERQQLWKKKLASFPPVPAATITAQTSAII
                     AEAPEAIDVVHSRNGETLRYFGLPFARVRTLLGVEKVWFGLDRTHRRLLDESTRREWE
                     NLLHDLRAYRSPFAVDHRHAFYRSAAEAWLESLLRRDITKL"
BASE COUNT         1442 a         1934 c         2012 g         1429 t
ORIGIN      
        1 cccagccata gccaggtcga gccgccgagt ccttccatgc agggcagtaa aatagcatct
       61 gagtttcaca ctggcaaacg aaggttctga gttcaagctt tagcttgctt gcacgaagac
      121 agcctaaagg ctgaactcaa aacgcgtgct gcgtaggttg taagttgtcc gctatctccc
      181 ttacaatccg cggttcgccc tcgaaaggta ataaataatg ctcaaacaat taggacgtct
      241 cgaacgaaca cgtaacattg tcatcctcgg atttgcggtg ctgatggccg tcagcttgat
      301 cttcttctac gcccccggcc gcaccgcgag cagtatcgat ccgaccaaga acacggaatc
      361 cgtcgccaag gtcggctccg accacatcac cgtcgccgag ctagcccgcc ggcgtgaaag
      421 catgatgcag gcctatggac cccaactggc ctcgatcggc ggcagccgga tctttctcga
      481 tggcctaatc aagagccgcg tgatcgaaca ggaagccgct cgcctcggac tcggcgccac
      541 tgatggggaa ctgaaagagc ggctggtcaa acagttcagc gatgcttccg gtcagtttgt
      601 cggttacgac cgttacaaag aatcggtcgt ggcgcgttac ggcgacgtcg agagttttga
      661 aaaagagatg cgcaacatca ttgcgcaaga gaagctgcga gcatttgtta ccgcgagcat
      721 caacatttct gacgatgaag tgcgcgaaga gttcaagcgc cgcaacacgt cgtttgacgt
      781 caattatgtg tcgctcacag cggacaagct ggccgcgaag atccagccga gcgacgaaga
      841 gatgcgcagt tacttcgaga gccacaagac tgaatatcgc tacctcgaac cgcagcgcaa
      901 agttcgctac gtctttatca acatcgagaa agccggttcg aaactgaaca tttcagatgc
      961 ggatctaaag gccaatttcg atggtctgga tcccaaatac aaagaggccg gcgtcaagat
     1021 tcaacagatc atgttgaagg tcgcgcgccc ggatctcgat gcgcaagtcg agcagaaggc
     1081 gaaggacctc attgcgaagc taaccggcgg cggccgcacc gccacggaag aggcgtttgc
     1141 tgaggcggcg agaggaaact cggaagatcc ggcgaccgcg agaaacaatg gttatctcgc
     1201 agctccgttc aaacaaaaca caaacaagcc gcacggtttg tacgaccgcg cagtgacgat
     1261 gcaggttggc gaagtctccg acattccgac gcgctacgcc ggcaactggt acatcctgcg
     1321 tcgtggtgat tccgttccga agacgtttga acaggcgaaa cccgagctgc tggtttcggc
     1381 tcgtaatcaa cgtgggtacg gtgttgcact ggagctagcg aagagggctg cggcgcgttt
     1441 gaaggaaacg aaagacccgc agaaggtggc gcaggagttt gccgctgaag ccaacatgac
     1501 tccggccgag atggtgcgcg aaacgggtta tgtgaaaccg ggcgacgagg tgcaggacat
     1561 cggcgcgaat cagcagtttg agcaggagtt ggcgaagctg aacaatccga acgacgttgc
     1621 cgatcaggtt ggagttaagg atggttttgc gattccgatg ctggtcgaca agaaagagcc
     1681 gcgcattccc gagtttgacg aagtgaagac gaaggtcgcg gacgcaatca agcagcagcg
     1741 tgcgaaggaa cagctcgagc agaaagcgaa agacctgatt gctggtttga gtggtccgaa
     1801 cgcggtgaaa gccgcgggcg agaaggacgg ctacgacgcc gggtttgaag aaggtttcaa
     1861 gctgagctcg agtttaggaa aagcaggtac gagtaccgcg ctcgatgacg tgatttatgg
     1921 tctgaaggaa ggcgagtaca gcaagacgcc gatcaaagtc gacgacaagt gggttgttgt
     1981 cggtgttgtg aagagaactg aaccggactt caaggcgttc aacgaaggcg aacgggatcg
     2041 gttgaagcag caactgctcg gcgcgcgcga gtcgcaggtc tttgaggatt acattgccaa
     2101 agtgcaggag aagatgaagc aggatggcaa gatcgagatc tatgaggacg tgctgaaaga
     2161 gctcgacgaa gtgcaagcgg cttcagcgcc tgaaccggca ctgcctccgg gatttaactt
     2221 cccaacgaag taagccgcga agaggcacaa aaaagcacaa gaggcacaag aacagcttag
     2281 ttgctgactt gtgcctcttg tggctttaat taccgcccat cagtggtcca acatcagcct
     2341 gcggcacggc tgtgcggatc tgtagctcgt tcgcggctgt gacgatcttc atattggcca
     2401 gcgcgctctt cgcgagcacg cctttcgccc ccgatatccg cccaacaaac aaagcaccaa
     2461 actgcttcag accttcaatc gtgtcgccga ggttcttcgc ggcgtccgca ttcacagctc
     2521 gcgccgccag aaacagctcg agatcccttt ccgtcgaacc aaccgaaccg tagacctgtt
     2581 tcaacttgct caagtcagcc gcgatcggcg cgttgccgaa gtcgacgttg cgaatcaact
     2641 gttccgagat gttgctgccg aatccgatga tggcgtttgg atcgcggtta gccaacgcga
     2701 tcaactctgc attggcgttt ttgcgtgaac gcgtggcgtc gatcgctgcc tgcacacccg
     2761 cgggatcgcc gagcgcgagc acgttagcgt caagcggcgc cgccgcaagc tcggcgatac
     2821 gcacgtcaaa catcccgagc agtcgaatat tctgatcgag cttgaagatg tagatcgttt
     2881 tgccctgata cttctcctcg cgatacgcac cgttggaagc gactcttccc gccgccacca
     2941 tcgccgccgg actaaacgtt ccgtttgcca gagcgattgt ctgcgtcttc gtcacgccct
     3001 cggacggaaa cgtgaaccga acacccaacg cgatctgctc gaacatgcgc gggtcgagac
     3061 cggtgcggcc cttaaacgcg tcgatactcg cattaacctc ggccaacttg gccgggttgc
     3121 tggcgagtat tcgcggcatc gcttcgctca gcagttgccg catcttcact tgcgcgaccg
     3181 cgtccgattc cggtaacgaa gcgagcagtc ccgtgcgagc cggagcgttg ttgcgagcac
     3241 gtgtctgcgc cagcgcctgc gcagcacaca gcgctaaaac gacgattgcg aggtttataa
     3301 attttatttt cactacgaaa gcctttctag gattttgctg tacatgggag atgagtggtt
     3361 gcgttgacgc ccgcactgcg atgcccgaac gagttcctca ggttggctcg gttggcggct
     3421 tcattccgag accttcaagc gcttcggaag gtcgagaatt gtaatctttt cataaccttc
     3481 cggtatttga aaaacagtgc ggtcgacgtt gagcgtgatg tctgttagct ccatcgtaac
     3541 gcgcttgccg tcgccggatg tcgtttccga cttgaccggc atgtgtaacg cttcgtcgat
     3601 ccaaatcaga gtttcattaa cgctgacgtt tgcggctgcg gaactgttaa caacaacgcg
     3661 gtacttttgc gccgtgcggc cgttgacggt ttcggtggcg atttgctgat aggtcgtcga
     3721 gagcggatcg gtgtgcagca agcgatcggg cgagctttcg gattcgtcgt agataccggg
     3781 cgtcgccgcg ccgtctgttt tcgtcaggtc tacgaagacc ttttcgtcgg gtacgagcag
     3841 gaaccgtcct tccggcaggt aaagatagac cacgcgctgt tgccatagct cggtttcatc
     3901 gcggcgcagt tcgccgtcgc gcgcgacgat gttcttcgtg actgtggttt cgccgttggc
     3961 ggttacggtc gtgatcgtgc gcctggcttg atagcgctcg ggctcttttg tttggaaagg
     4021 cggagtcgag gagacaacgg tttcgttcgt gttgctttcg gtcgcgactt tttgatttgg
     4081 cgcgcaggag agcgtgatga gagcggcaga aagcgaggcc agcaactgca gcttccggcg
     4141 cgacagcatc acactcgttc cagcaacagg gccaaaccca tgccgccgct gacgcacagt
     4201 gttgcgagtc cgagctttgc ttcgcgcttt tgcatctcgt ggaccaacgt ggtcgtgatg
     4261 cgcacgcctg tgcagccgat cggatggccc aacgcgatcg cgccgccgtt gacgttcact
     4321 cgttccgggt cgaagccgag ctcgcgatcg caggcgacga cctgggccgc gaaggcttcg
     4381 ttgagctcga tcagatcgat ctggtccaac gtcaggtttt gtcgcgcgag taatgcgcga
     4441 acggcaggca ccggaccgat acccatgatg tcgggagcga cgccggagat ctcgtaatcg
     4501 acaattcgcg cctgtgcttt gacgcccgct cgcttcaggc ccgcttcact caacacgact
     4561 agcgcggacg cgccgtcagt gatacccgaa gagtttccgg cggtgacgct gccgtctttg
     4621 tagaacaccg gcggcagctt cgccagatcg gcgagcgtgg tgccggcgcg gcagtgttcg
     4681 tctttcgcga agctcgtcgt ttcgtttttg cgtccggcga tctcgagcgc catgacttca
     4741 tctttgaaac ggcccgagtt gatcgcggcc tcggctttct gctgcgagcg cagggcaaac
     4801 tcgtcctgtt cttggcgaga gatctcgtat tggcgtgcga gtttctcagc cgtttggccc
     4861 atcatcaacc cggacagcgg atcgttgaag ccgtcgcgat acatgccgtc gacgagttgc
     4921 atgttgccca tgcgcatgcc ccaacgcgcg ccttcggcga agtacgggac gcgcgacatg
     4981 ctctcggtgc cgcccgcgag cacggcgtcg gcgcggccca acatgatctc ctgcgcggcg
     5041 agaatgatcg ctttgatacc cgagccgcag gcctgattga ccgtgaaggc cggcaccgtg
     5101 tccggaacgc ccgcgcgaaa agtgatctgg cgtgcgacgt ttggaccacc gcccgcttgc
     5161 cgggcgcaac cccagatgga gtcgtcgacc tgatccggcg caacgttcgc gcgtcttagc
     5221 gcttctttcg ccaccgcgac gcccatgtca gcggccgtcc acgactgcaa cgtgccgcca
     5281 aattttccga ttggtgttct tactgcacct gcgagaaaaa cgttcttcat ttcagttgac
     5341 gaaaatgtta gcacagggta gaagcattcc tgcaaaagcc ccttcagtgc atttctgagt
     5401 agtttgacgc atgtcgtacg actaagttaa cggcttcgcc gcgaagtgac gcctcgggcg
     5461 ttatgaagtt agcggctccg ccgccggatg tgaggcgagg ctacgcctcg ccggagcgtt
     5521 agaagttaaa cggtcgggct gtgcccctgg tacggccttt ggcccaatag ttcggggctg
     5581 agcccgaacc gggggcacag ccccattggg tggtgtggtg ctgacggcaa ggcgtagcct
     5641 tgcctcacat ccggcggcag agccgtagta gaaaagttct taaacctcac gttatgttcg
     5701 aaaccctcac gtctctcgct tcgatcgaag ctgcgcgccg gcagatcgcc gatctctttc
     5761 gccaacacac cgaatggttt tgtactgcgg ggcgtgggga gacttacggg ctgcgtcgcg
     5821 aggagatgga tgtttcggtt gcgcacgggc ggttgatgct ttcgtgctgg acggagaagg
     5881 gaagccgttc gtggcgcatt ctcgcgtggg agtggaacgg ccaaatgttg ctgttgcagg
     5941 cctcgcgtcg cttcggcgcg gagttgccgt tgatcgaact cgttccgcgt gcgtcggcgt
     6001 tggcagtggc cgcgacgatt cgcgccgcgc ggcagcttcg ctgcgacaag ttggcacggc
     6061 tcgcgtgcgc tgcacaaccc gaaacacgca tcgagcgttg cgctttaaat caaggtacgc
     6121 gtccgagtca accgggccgt tacgcgcgca tcatcctgca ccgcaaacga acccgaatcg
     6181 cagtcagcgg tccagtggtc gcaagccagc catcgtcagt cgatgcgttt ttgtcgtcga
     6241 cgttattgtg gttcaaacga accgccgatc gcgccaaagc tccttacttc gaacaactct
     6301 ggctcatcat ttctaatgaa ctactcaagc cgttgcttta tcgcgtcgca ctgttacgtc
     6361 aaagtttgcg agatcagatt cgcgtattcg tggttgataa agacctcgcc accttaacgc
     6421 cggcgcagcc gcttgagcgg caacaactct ggaaaaagaa actcgcctcg tttccacctg
     6481 tccctgcagc aaccataacc gcacaaacca gcgcaatcat cgccgaagca ccggaagcca
     6541 tcgacgtggt ccattcgcgt aacggcgaaa cactgcgcta cttcggacta cctttcgcac
     6601 gtgttcgcac gttgctcggc gtcgaaaaag tctggttcgg attagacagg acacaccgtc
     6661 gtctgctcga cgaatcaacg cggcgcgagt gggaaaacct gcttcacgat ctgcgcgcgt
     6721 atcgctcacc gttcgcggtc gatcaccgtc acgcgttcta tcgttccgcc gccgaagcgt
     6781 ggctcgaatc gctgctgcgc cgcgacatca ccaaact
//
LOCUS       DASWTX010000783         2984 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_295926, whole genome shotgun sequence.
ACCESSION   DASWTX010000783 DASWTX010000000
VERSION     DASWTX010000783.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2984
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295926"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..466
                     /locus_tag="VGD38_11830"
     CDS             <1..466
                     /locus_tag="VGD38_11830"
                     /inference="COORDINATES: protein motif:HMM:NF015835.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728754.1"
                     /translation="YDALILASAGLIRLGLRDRISAAISPREILPAVGQGAIAIETRT
                     DDELAVAATSKLNHRETELACRAERAFLRSLGGGCQFPIAAHATIEGQTLQLEGLVAK
                     PHGEEILRDRSSGALDQPEGIGATLAARLIERGADTLLHGKRMSDDAWQGHE"
     gene            444..1247
                     /locus_tag="VGD38_11835"
     CDS             444..1247
                     /locus_tag="VGD38_11835"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006782 - protoporphyrinogen IX
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEY0728755.1"
                     /translation="MHGKGMSDALAGRTVVVTRAASQAGEFVGELERYGAKVIICPTI
                     EIAEPESYERLDEAIDHLYGYDWLIFTSANAIEYFLRRLPARGVGVEELDEIKVCAIG
                     QASADKLRDAHVHVDVIPSQSKAEGVFDALSEFVGGAEQLHGLNILLPRAAVARDYLP
                     KPLEDAGARVDVVTAYRTVIPDNLDRGRLSAMLAGSADCIAFTSSSTVKNLALLFDTH
                     DLSKVLSGLTIACIGDITTATAEEYGLNVQIQPPQSTVKDLAQAIADYY"
     gene            1273..2325
                     /locus_tag="VGD38_11840"
     CDS             1273..2325
                     /locus_tag="VGD38_11840"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY0728756.1"
                     /translation="MSSTLDHTGELEQTRRENELLRRQLQERGAFGELVGNSESIRKI
                     YTLIEQVAPSSASVLITGESGTGKELVARTIHQMSPRRDRPFVAINCSAIPETLMESE
                     LFGHEKGAFTGAASRRQGCFELADTGTLLLDEIGEMPALLQAKLLRVIEERAVRRLGS
                     RKEISVDVRLLAATNRLPHQAVEEGKLRSDLLYRLNVFGIHLPSLGERKEDLPLLAQH
                     LVTQLAEKHGRPARFLSRAAVEALQFHNWPGNIRELRNVIERAVIICSGEQIERHHFA
                     PYPIEQRERLRNEDTLTLPVGTPLEEVERQMIMRTLQKTKNNKTRAAELLGISLKTLH
                     NKLNLYRERGVLHDDE"
     gene            2312..>2984
                     /locus_tag="VGD38_11845"
     CDS             2312..>2984
                     /locus_tag="VGD38_11845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728757.1"
                     /translation="MTTSDASVLLFFIDGLGIGTRGPFNPLDNLPNAAPLAVFQNETP
                     ETFLDGIIVPTDPRLGVEGRPQSASGQTTILTGINAPATSGYHKQGFPNKPLLEIIGQ
                     HSIFRQLSEAGVEPITFANAYTSGFFSERPRWLSATTAAVEAAGLRFRTMEDVRNGNA
                     VYMDYTNRFLIERGEDVAIRTENEAARVLSRIVAQNRFTLYEYFITDKVGHAQDMGAA
                     RLVLTS"
BASE COUNT          663 a          938 c          825 g          558 t
ORIGIN      
        1 gtacgacgcg ctgatactcg cgtcggctgg tttgatccgt cttggtttac gtgatcgaat
       61 cagcgcagca atttcaccac gcgagatact gccagcggtg ggacaaggcg caatcgcgat
      121 tgaaacgcga acagacgacg agcttgctgt tgcagcgacg tccaagctaa atcatcgcga
      181 gactgaactt gcctgtcgcg ctgaacgagc gtttctgcga agtctcggtg gtggctgtca
      241 gttcccaatc gccgcgcacg cgactataga aggtcaaaca cttcagcttg agggcctggt
      301 cgcgaagcca cacggcgagg agattttgcg ggaccgcagt tccggcgcgc tcgatcaacc
      361 agaagggatc ggggctacac ttgcagcacg cctgattgag cgcggcgcag acacgctttt
      421 gcatggcaag cgaatgagtg acgatgcatg gcaagggcat gagtgacgcg ctcgccggga
      481 gaaccgtcgt cgttacgcgc gcggcgtcgc aggctggtga gtttgttggt gaactcgagc
      541 gttacggcgc gaaggtgatc atttgtccca ccatcgagat tgcggaacct gaaagttacg
      601 aacgtctcga tgaagccatc gatcatctct acggctacga ctggctgatc ttcaccagcg
      661 cgaacgcgat cgaatacttc ctgcgccgtt tgcctgcgcg gggcgttggt gtcgaagagc
      721 tcgacgagat aaaagtctgc gcgatcggtc aggcgtcggc tgacaagctg cgcgatgcgc
      781 acgttcacgt tgacgtcatt ccgtcgcagt cgaaagcaga aggcgtgttt gatgcgttga
      841 gtgaatttgt cggcggcgcc gaacagcttc acgggctcaa catcctgttg ccgcgcgccg
      901 ctgtcgcacg cgattacctt cccaaaccgc tcgaagacgc cggcgcgcgc gtcgatgtag
      961 ttaccgccta tcggaccgta attcccgaca acctcgatcg cggacggctg agcgcgatgc
     1021 tcgccggcag cgccgactgc atcgccttca caagctcatc aaccgtcaaa aacctcgccc
     1081 tcctctttga cacacacgac ctcagcaaag tcctctccgg cctcacgatc gcttgcatcg
     1141 gcgacatcac caccgccacc gccgaagagt atggattgaa cgtccaaatc caaccacccc
     1201 aatcaacagt caaggacctc gcccaagcga tcgcggatta ttattgaaat tcatgtgcta
     1261 aactgcgtaa cgatgtcttc gaccctcgac cacaccggcg aactcgaaca gaccagacgc
     1321 gaaaacgagc tactgagacg gcaactccag gagcgcggcg cgtttggcga actcgtcggc
     1381 aactcggagt cgatccgcaa gatctacacg ctcatcgaac aggtcgcgcc ttcatccgcg
     1441 tccgtcctga tcacgggcga atcaggcacc ggcaaagaac tcgtcgcgcg caccattcac
     1501 cagatgagcc cgcgccgcga ccgccccttc gtcgccatca actgttccgc cattcccgaa
     1561 accctgatgg agtcggaact gttcggccac gaaaaaggcg cgttcaccgg cgccgcttca
     1621 cgccgccagg gctgtttcga actcgccgac accggcacgt tgctgctcga cgaaatcggc
     1681 gagatgcccg cgttgctgca agcaaaactc ttgcgcgtga tcgaagaacg cgccgtgcgc
     1741 cgcctcggca gccgcaaaga aatctcagtg gacgtgaggc tcctcgccgc gacgaatcgc
     1801 ctaccgcatc aggctgtcga agaaggcaaa ctgcgcagcg atctgttata tcgtctcaac
     1861 gtcttcggta ttcatcttcc gtcactcggc gaacgcaaag aggatctgcc gctgttggcc
     1921 caacacctcg tcacgcaact cgcggaaaag cacggccgcc ccgcgcgttt tctcagtcgc
     1981 gcagcagtcg aggcgcttca gtttcacaac tggcccggca acatccgcga actgcgcaac
     2041 gtgatcgagc gcgccgtgat catctgctcc ggcgaacaga tcgaacgcca ccacttcgcg
     2101 ccgtacccga tcgaacaacg cgaacggctg cgcaacgaag acaccttgac cttgcccgtc
     2161 ggcacgccgc tcgaagaagt cgaacggcag atgatcatgc gcacgttgca aaagacgaag
     2221 aacaacaaaa cgcgcgccgc cgagttgctg ggcatcagcc tcaagacact gcacaacaag
     2281 ctgaatcttt atcgcgagcg tggcgttcta catgacgacg agtgacgctt cggtcctact
     2341 cttcttcatc gacggactgg gcatcggcac acgcggtcca ttcaatcctc tcgacaatct
     2401 tccgaacgcc gcgccgctcg cagtctttca aaatgaaact ccggaaacgt ttctcgacgg
     2461 cataatcgtg ccgacagatc cgcggctcgg cgtcgagggg cgtccgcaga gtgcctcggg
     2521 tcaaacgacg atcctcaccg gcatcaacgc gccggcgacg agtggttatc acaagcaggg
     2581 ttttcctaac aaaccgttgc tcgagatcat tggacagcac tcgatcttcc ggcagctcag
     2641 cgaagcaggc gtcgagccga tcacgtttgc gaatgcttac acgagcggct tcttcagcga
     2701 acgtccgcgc tggctctccg caacgaccgc tgcggtcgaa gctgccggtc tgcgtttccg
     2761 aaccatggaa gacgtgagaa acggcaacgc cgtttacatg gattacacga atcgctttct
     2821 gatcgaacgg ggtgaagacg tcgccattcg cactgaaaac gaggcggcgc gcgtgctttc
     2881 acgcatcgtc gcgcaaaacc gcttcacgct ttacgaatac ttcatcaccg acaaggtcgg
     2941 tcacgcacag gacatgggcg cagccagatt ggttttgaca agtc
//
LOCUS       DASWTX010000784         4296 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_119692, whole genome shotgun sequence.
ACCESSION   DASWTX010000784 DASWTX010000000
VERSION     DASWTX010000784.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4296
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119692"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3817)
                     /locus_tag="VGD38_11850"
     CDS             complement(<1..3817)
                     /locus_tag="VGD38_11850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728758.1"
                     /translation="MLGSRSPVHIVASLTVTIFCLFAVASAGAQTPVAPVDKPVAQLT
                     ASPPKPAANTAPSVATPISDTVAAPAAEETVAKPADSAKAETEPTKPETPATRAPATP
                     AAPMQVQCTRTVKADVVAIPQPVMLNRLGATIPNAFVFALRADTTGTGNNIRLRDGKR
                     PRPIVLRANVGDCLEVTFTNAIPQAAFDSSTPNSPAVATKEVSLFIQGVEWTTSSQDD
                     ASFVGKNSSSLATPAAPPTPPTPMPPQTQVYKTFIRNEGTFLLYTMGDATAQPTGQIS
                     RGLFGALNVQPTGAEWYRSQITKQELDWAQKKVNGVPQFTADKQPIIDYNAKYPVNAA
                     RPAGTYILRMWDDQANPNLLYSDLTAVITGPKAGRFPGTTGVNNPEPPCNAANNGSGA
                     GNPLFCANPASPDRKQPYRELTIIYHEVGQIATQAFPVFYDPAMASTVNAGFDGFAIN
                     YGTGGIGAEVYANRIGVGPMGPCVDCKFEEFFLSAWSVGDPAMLVDRPANTSVLPAFT
                     TLPAQPPVPTTGPNPPVLCTAAQLASDPNCAGTKTPATGFPYSMKPLVKATKAYYPDD
                     PSNVYHSYINDHTKFRIHHGGTVATHVHHQHAHQWLMSPNSDQGAYLDSQMISPGASY
                     TLEMTFNGSGNRNKVVGDSIFHCHFYPHFAAGMWAMWRTHDTFEEGTKLDANGIPTAD
                     ARALPDGEIQAGTPSPALVPMPTLPMAPMPSAVHIKNGQIVYGTPADPDPTGDKVTVN
                     PGFPYFIPGIAGMRAPHPPLDFAPDGSGGFLDGGLPRHVTTGGTISYEKHDQFDWSKD
                     FATLTAKQLPEVGTKVEQVAMKFFGVRCRPSFFPDGTAGTCPPPTSTSPQMTQTKPTG
                     YVLNGLPLGPQMGAPFADPAVDDNGKPINFDPVTKVQRLRRYKAAAIQLNVVLNQQKW
                     HFPQQRILTLWNDVSPTMNNTRKPEPLFFRGNSGDIVEYWHTNLVPNYWLVDDFQVRT
                     PTDILGQHIHLVKFDVTSSDGAGNGFNYEDGTFSPDEVQEIIHAIKAPGGSWTACAGC
                     PTATLVPKPPPAEICGGPNPPAQCASQWLGAQTTVQRWYLDPVVDSQNVDRTLRTVFT
                     HDHFGPSTHQQAGLYAGLVVEPKDSVWQNLDGSPMGGGPITQAPVRPDGGPTSWMANI
                     ITANRTDSYREFMLEFQDLQLAYQAGSKTAPDPAKDKGWRDPTKAINPAVFPEYVGNP
                     ITVNGVMPRLVSTGNIPITGTQSVNYYNEPIPFRLPKGDLSYAFDNQAAKTNNPNQNP
                     EPQTPLMRAY"
BASE COUNT          808 a         1160 c         1363 g          965 t
ORIGIN      
        1 gataagcgcg catcagcggc gtttgcggtt ccgggttttg attcgggttg tttgtcttgg
       61 cggcctggtt atcgaaggcg taagacaagt cgcccttggg cagacggaac ggtatcggct
      121 cgttgtagta attgactgac tgggtgccgg tgatcgggat gtttccggta ctgaccagtc
      181 tcggcatcac cccgttgacg gtaatcggat ttcccacgta ctccggaaac actgccggat
      241 tgatagcctt ggtcgggtcg cgccatccct tgtccttcgc agggtcgggc gcggtcttcg
      301 aaccggcctg ataagcaagt tggagatcct ggaactccag catgaactcg cgataactgt
      361 cagtccggtt cgcagtgatg atgttggcca tccagctcgt tggtccacca tcgggacgaa
      421 ccggcgcctg ggtgattgga ccaccgccca tcggcgagcc gtccaggttt tgccagactg
      481 aatcttttgg ttcgactacg agaccggcgt agagaccggc ctgctggtgc gtcgaaggac
      541 caaagtgatc gtgcgtgaac actgtgcgca gcgtgcgatc gacgttctga ctgtcgacga
      601 cgggatcgag ataccaacgt tgaaccgtgg tctgtgcgcc gagccattgc gaagcgcact
      661 gcgccggtgg atttggtcca ccgcagattt ccgccggtgg cggtttcggc acgagtgtcg
      721 ccgttgggca accggcacat gccgtccacg atccaccggg cgccttgatc gcgtgaatga
      781 tttcctgcac ttcgtcggga ctgaacgtgc cgtcttcgta attgaagccg ttgccggcgc
      841 cgtccgaaga agtcacgtca aacttcacga ggtgaatgtg ctggccgaga atgtcggtcg
      901 gcgtgcgcac ctggaagtcg tcgacgagcc aataattcgg cacgaggttc gtgtgccagt
      961 attcgacgat gtcgcctgag ttgccgcgga agaacagcgg ctcaggcttg cgcgtgttgt
     1021 tcatcgtcgg cgaaacgtcg ttccacagag tcagaatgcg ttgttgcggg aagtgccatt
     1081 tctgctggtt gagaacgacg ttgagttgaa ttgcggcggc cttgtaacgg cgcaggcgct
     1141 gaactttagt aactggatcg aaattgatcg gtttgccgtt gtcgtcgact gccggatcgg
     1201 caaacggcgc acccatttgt ggtccaagcg gcaagccgtt caacacataa cccgtcggct
     1261 tggtttgggt catctgcgga gacgttgaag tcggcggcgg acaagttccg gctgtaccat
     1321 ccgggaagaa gctgggacgg caacgcacgc cgaagaactt catcgcgact tgttcgacct
     1381 tggttcccac ttccggcaac tgcttggccg tcagggtcgc gaagtcttta ctccagtcaa
     1441 attgatcgtg cttctcgtag gagatcgtgc cgccggttgt gacgtgacgc ggcaaaccac
     1501 cgtcgagaaa acctcccgat ccatccggtg cgaaatcgag tggcggatgc ggcgcgcgca
     1561 tgcccgcgat tccggggatg aagtacggga aaccgggatt gaccgtcacc ttgtcgccgg
     1621 tcggatcggg atccgctggc gtgccgtaaa cgatctggcc gttcttgatg tgcacggccg
     1681 aaggcatcgg cgccatcggt aacgtcggca tcggcacgag ggccggcgac ggcgttccgg
     1741 cttgaatctc gccgtcaggc aacgcgcggg cgtcggctgt cgggatgccg ttggcgtcga
     1801 gtttcgtacc ttcttcaaac gtgtcgtgcg tgcgccacat ggcccacata ccggccgcga
     1861 agtgcggata gaagtggcag tggaagatcg agtcgcccac gaccttgtta cggttgccag
     1921 agccgttgaa cgtcatctcg agcgtgtagc tcgcgcccgg gctgatcatc tggctgtcga
     1981 gatacgcgcc ttgatcgctg ttcggcgaca tcagccactg gtgcgcgtgc tggtgatgca
     2041 cgtgcgtggc aacggtgccg ccgtgatgaa ttctgaactt cgtgtggtcg ttgatgtagc
     2101 tgtgatagac gtttgaagga tcgtccggat agtaagcctt cgtcgctttg acaagcggct
     2161 tcatgctgta cggaaaaccc gtagctggcg tcttcgtgcc ggcgcaattc ggatcgctcg
     2221 cgagttgggc ggcagtacag aggaccggcg ggttcggtcc ggttgtcgga accggaggct
     2281 gtgccggtaa cgtcgtgaac gccggcaaca cgctcgtgtt ggccggacga tcgacgagca
     2341 ttgcgggatc gcccaccgac cacgcgctca ggaagaactc ttcaaacttg caatcgacgc
     2401 agggtcccat cgggccgacg ccgatgcggt tggcataaac ctcggcgccg atgccgccag
     2461 tgccgtagtt gatcgcgaag ccgtcgaagc ccgcgttaac ggtgctggcc atcgccggat
     2521 cgtaaaacac aggaaatgcc tgcgtcgcga tctgcccgac ctcgtgatag atgatcgtga
     2581 gttcgcggta cggctgtttg cgatccggcg aagcggggtt agcgcagaag agcggattgc
     2641 ctgcgccgct tccgttattc gccgcgttgc acggaggctc gggattgttc acgccggtgg
     2701 tgccggggaa ccttcccgct tttggaccag tgatgaccgc cgtgagatcg ctgtagagaa
     2761 gattgggatt ggcctggtcg tcccacatcc tcaggatgta cgtgccggcc ggacgagcag
     2821 cgttgactgg atacttggcg ttgtagtcga tgatcggctg tttgtccgcg gtgaactgcg
     2881 gaacgccgtt gactttcttt tgcgcccagt cgagttcctg tttcgtgatc tggctgcgat
     2941 accactcagc gccagttggc tgcacgttca gtgcgccgaa aagcccgcgg ctgatttggc
     3001 cggtcggttg cgcggtggcg tcgcccatcg tgtagagcag gaacgtgcct tcgtttctga
     3061 tgaaggtttt gtaaacctgc gtctgtggcg gcatcggcgt tggcggtgtg ggcggcgctg
     3121 ccggtgttgc cagactcgaa gagttcttgc ctacaaacga agcgtcgtcc tgactgctcg
     3181 tggtccattc cacgccctgg atgaacagcg agacttcctt tgtcgcgact gccggtgaat
     3241 tcggcgtcga gctgtcgaaa gcagcttgcg gaatggcgtt cgtaaaagtt acttcgaggc
     3301 aatcgccgac gttggcgcgc agcacgatcg ggcgcggccg tttgccgtca cgcaatcgga
     3361 tgttattgcc ggtgccggtc gtgtcagctc tcagtgcaaa cacgaacgcg ttgggaatcg
     3421 tagcgccgag gcggttgagc attaccggct gtggaattgc gacgacatca gctttgacag
     3481 tgcgcgtgca ttgaacctgc atcggcgcgg ccggtgttgc cggcgctctc gtcgctggag
     3541 tctcgggttt cgttggttca gtttcagctt tagctgagtc agcgggttta gcgaccgtct
     3601 cctcagcagc aggagcagct acggtatcgc tgatgggagt agcgacactc ggcgcggtgt
     3661 tagccgcggg cttcggaggc gaagcggtta gctgtgctac tggtttgtcg actggagcaa
     3721 cgggcgtttg agcgcctgcg ctcgccacgg caaacaaaca aaagatggtc actgttaatg
     3781 aggcaacaat gtggacgggg gatctcgaac cgagcatttt tactctcctt gtttgacgtt
     3841 tgccgcttgg tggcgaacat taaaaaagac tgaggatcaa aattgacact cgggacaact
     3901 tccgaggata ggtttgttca agaatcgaga gctggcgtaa gcgggtgacc agcgcgtgag
     3961 taacaataag cgcccttaca tattgacacc cgcagactag tagtcttacc cttccgtgtc
     4021 aagcaaaatc cttgcggaag ttctaaaacg cgtttagtaa tccaatctga agttttaacc
     4081 accagtcctc cgcccggact taacacgctc tgagatttat ctttcgcctt cacctactgg
     4141 agaaaaaggg tggcgactca catcactgta gtcaaatttg gcggcacttc gatccaggac
     4201 gcacctgcgt ttgaacgagt cgcgcgaatc ctcaaagcga aacaatcatc ggcattgatc
     4261 gttgtcgcat cagcgatgag cggcgtaacg gacgcc
//
LOCUS       DASWTX010000785         2127 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_55404, whole genome shotgun sequence.
ACCESSION   DASWTX010000785 DASWTX010000000
VERSION     DASWTX010000785.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2127
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55404"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            33..>2127
                     /locus_tag="VGD38_11855"
     CDS             33..>2127
                     /locus_tag="VGD38_11855"
                     /inference="COORDINATES: protein motif:HMM:NF016450.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728759.1"
                     /translation="MSYSVPLKVKIRLTVYDKDPDTEVLSIRDIKEEEVFFGEIPLMT
                     DNGTFIINGTERVIVSQLHRSPGVFFKRGAIYVAKIIPYRGSWVEFEYDQKNLLYVRV
                     GKRKFLASIFLRALGLWFNQKVDLKSLRTDSQLEDAVKNSSFTDEDMLRAIYITDEIR
                     LEEGRLKLQVPESGQTNLVGMKVDFDIKGKGPDPIVRSGKKVTASALEQLRKSGIPEV
                     EIDSSQLEGAFTVSDIVNTESGEVVLEANNEITPAKLQEIIEAGITNFAVFFPERDDV
                     GPVLSLTLKKDVITKPVDALLEIYRKMRPGDPPTVQTAYRLLEAMFFDPRKFDFSRVG
                     RLKFNIKMGKPERERIEDPLLSANDFYEVVTYVLKMRKNPSEYQADDIDHLGNRRVRA
                     VGELLENQFRIGLERMERAIKEKMSIHQEMQTTMPRDLINAKPVTAAVREFFGSSQLS
                     QFMDQTNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIG
                     LISSLSCFARINEFGFIEAPYRKVSDGRVVEYVRVINGGDTKFKPGDHVPFEDVEKAN
                     KKLTGESRPAEFEPWPFYLTAWEEDKHVVGQANIELDENGNIINERNAARKAGEFILA
                     LRKDIEYVDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQSVPLLRAEAPYIGTG
                     MEKVTARDSGAVVVAK"
BASE COUNT          477 a          599 c          633 g          418 t
ORIGIN      
        1 aacacgatca gcaggaatgt caggaacgcg gcatgagcta cagcgttccg ctgaaggtca
       61 aaatccggct cactgtctac gacaaggatc cggacacgga agtgctctcg attcgcgaca
      121 tcaaggaaga agaagtcttc ttcggcgaga ttccgctgat gaccgacaac ggcacgttca
      181 tcatcaacgg caccgagcgc gtcatcgttt cgcagttgca tcgttcgccc ggcgtctttt
      241 tcaaacgcgg cgcgatctac gttgcgaaga tcattccgta tcgcggttcg tgggtcgagt
      301 ttgaatacga ccagaagaac ctgctttacg tgcgcgtcgg caaacgaaag tttctggcgt
      361 cgatcttcct gcgtgcgctc ggtctctggt tcaaccagaa agtcgatctc aagtcgctgc
      421 gcaccgattc gcaactggaa gacgcagtca agaactcgtc gttcaccgac gaggacatgc
      481 tgcgcgcgat ctacatcact gacgagatcc ggctcgaaga aggccgcttg aagcttcagg
      541 tgccggagag cggacagaca aatctcgtcg gcatgaaggt cgacttcgac atcaagggca
      601 aggggcctga tccgatcgtt cgcagtggca agaaggtcac ggcatcggcg ctcgaacagc
      661 tccgcaaatc cggcatcccc gaagtggaga tcgactcgtc gcagctcgaa ggcgctttca
      721 ccgtttccga tatcgtgaac accgagagcg gtgaagttgt tctcgaagcg aacaacgaga
      781 tcacgccggc gaagctgcag gagattattg aagcgggtat tacaaacttc gccgtgttct
      841 tccctgagcg cgatgacgtt ggtccggtgc tctcgctgac gttgaagaaa gacgtcatca
      901 ccaagcccgt ggacgcgctt ctcgaaatct accgcaaaat gcgcccgggc gatccgccga
      961 cggtgcagac tgcttatcgc ctgctcgaag cgatgttctt cgatccgcgg aagtttgact
     1021 tctcgcgcgt cggccggctg aagttcaaca tcaagatggg caagccggaa cgcgagcgca
     1081 tcgaggatcc gttgctctcc gccaatgatt tttacgaagt ggttacttac gtgctgaaga
     1141 tgcgtaagaa cccgtcggag tatcaggctg acgacatcga ccatctcgga aatcgccgcg
     1201 tgcgtgcggt tggtgagttg ctggaaaacc agttccgcat cggcctcgag cgcatggagc
     1261 gtgcgatcaa ggagaagatg tcgattcacc aggaaatgca gacgacaatg ccgcgcgacc
     1321 tgatcaacgc caagccggtg acggctgcgg tgcgtgagtt cttcgggtcg agccagttgt
     1381 cgcagttcat ggaccagacg aacccgctgt cggagatcac gcacaagcgc cgtctctccg
     1441 cactgggacc gggcggtctg tcacgtgagc gcgcgggatt cgaagtccgc gacgttcacc
     1501 cgacgcacta cggtcgtatc tgtccgattg agacgcctga aggtccgaac atcggcttga
     1561 tctcgagtct gtcgtgcttc gcgcgtatca atgaattcgg atttattgaa gcgccgtatc
     1621 gcaaggtcag cgacggacgc gtggtcgagt acgtgcgcgt catcaacggc ggcgacacga
     1681 aattcaaacc gggcgatcac gttccgtttg aagacgtcga gaaggcaaac aagaaactca
     1741 cgggtgaatc gcgccccgct gagttcgaac cgtggccgtt ctacctgacg gcgtgggaag
     1801 aggacaagca cgtcgtcggt caggccaaca tcgagctcga cgaaaacggc aacatcatca
     1861 acgagcgcaa cgcagcccgg aaggcgggtg agttcattct cgcgctgcgc aaggacatcg
     1921 agtatgtcga cgtttcgccg aaacagctcg tgtctgtcgc cgcgtcgttg attccgttcc
     1981 tcgaaaacga cgacgcgaac cgcgcgttga tgggttcgaa catgcaacgc cagtcagtgc
     2041 cgctgctgcg cgcggaagcg ccttacatcg gtaccggcat ggagaaggtc actgctcgcg
     2101 actcgggcgc ggtcgtcgtt gcgaaac
//
LOCUS       DASWTX010000786         2391 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_226943, whole genome shotgun sequence.
ACCESSION   DASWTX010000786 DASWTX010000000
VERSION     DASWTX010000786.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2391)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2391
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_226943"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1027
                     /locus_tag="VGD38_11860"
     CDS             <1..1027
                     /locus_tag="VGD38_11860"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0728760.1"
                     /translation="AMKFVLTERLAKIEGRTALVLFTDGVDNDSRNATLESALQQAAR
                     TEALIYPVQFSTYDYIKARSPSSEFKPPEGSGFSEQDYQRADVFLHQLAETSGTGVYP
                     AFDISDLERAIASIVDELHNEYSIGYYPRTKGQPGETRTVEVRVSRPQLAVRARSGYV
                     VDQSGAVVRTTKKETTPAPALDSSGSIPVSRPPETSPIEGRWICKGPDAPSDHAVVQE
                     GIVSHCPPSTRANDQTNAWLIKKPGPTDVLCKGFVMLNGREVAGAPVPAGYVVTGEVK
                     SLKCSASSNAAVTANAWEIRLPRANDVVCKGFPLPRGFVVAQERSAPSCPSIRGKQNA
                     WLIRTTN"
     gene            complement(1035..1265)
                     /locus_tag="VGD38_11865"
     CDS             complement(1035..1265)
                     /locus_tag="VGD38_11865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728761.1"
                     /translation="MGVKDQHKAGIPAKPRGQQTGFAGNPDQNREEKDQTPALRGIRK
                     KGNKMFGDASRQHTGDSVRPSTNRPSTPGMRK"
     gene            complement(1270..>2391)
                     /locus_tag="VGD38_11870"
     CDS             complement(1270..>2391)
                     /locus_tag="VGD38_11870"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEY0728762.1"
                     /translation="GVVIGNLVLFGFTGAEPLKTNETIAALAELGVIILLFEVGLESD
                     LKEMVEVGWSSLLVAVMGVVVPFFLGWAVSAYFIPEEPRLVHVFIGATLCATSVGITA
                     RVFKDLGKLATREARIILGAAVIDDVLGLLILATVAGAIRAAASGGVLSLFDVGLIAA
                     KSLLFLVAAIAIGHFFMPRVLRGAGRLETRGVLLTLAISFCLFLAWAASKVELAPIVG
                     AFAAGLILDEVHYRPKGGRTERGLNDLLQPVSTVLVPIFFVLMGLKVDLRLFTRLDIL
                     GFAAMLTIAAIVGKQVCGLAVMDRGVNRVAVGLGMIPRGEVGLIFAGIGATLMLPTAA
                     GVNEPVINAATFGAVVIMVIITTLVTPPSLKWSLGRKGD"
BASE COUNT          548 a          787 c          636 g          420 t
ORIGIN      
        1 cgcgatgaag tttgttctca ctgagcgact cgcgaagatc gaaggccgca cggcgctggt
       61 cctgttcacg gacggcgtcg acaacgacag ccgcaacgcc acgcttgaaa gcgcgttgca
      121 gcaggccgcg cgtacggaag cgctgatcta tccggtgcag ttcagcacct acgactacat
      181 caaagcgcgt tcgccttcga gcgagttcaa gccgcccgaa ggcagcggtt ttagtgagca
      241 ggactatcaa cgcgccgacg tcttcctgca ccagctcgcc gaaacatccg gcaccggcgt
      301 gtatcccgcg ttcgacatca gcgacctcga acgcgcgatc gcgagcatcg tcgacgaact
      361 gcataacgaa tacagcattg gctattaccc gcgcacgaaa ggccaaccgg gcgagacgcg
      421 cacggtcgag gttcgcgtga gtcgtccgca actagcggtg cgcgcgcgca gtggttacgt
      481 cgtggaccag tcaggcgctg tcgtgcgcac gacaaagaag gaaaccacgc ctgctccggc
      541 gctcgactcg agcggctcga ttccggtgtc gcgtccgcca gagacttcgc cgatcgaagg
      601 acgatggatc tgcaaagggc cggacgcgcc gtcggatcac gccgtcgtgc aggaagggat
      661 cgtttcgcac tgcccgccga gcaccagagc gaacgatcag acaaacgcgt ggttgatcaa
      721 aaagcctggt ccaacagatg ttttgtgcaa agggttcgtg atgttgaacg gccgcgaggt
      781 cgcaggcgcg ccggtgcccg ctggttacgt ggttacgggc gaagtgaaat cgctcaagtg
      841 ttctgcaagc agcaacgccg ccgtcaccgc aaacgcgtgg gagattcgtt tgccgcgcgc
      901 taacgacgtc gtctgcaaag gctttccact accccgcggc ttcgtcgtcg cccaggaaag
      961 atccgcgccg agctgtccgt caatccgtgg taaacaaaac gcgtggttaa ttagaaccac
     1021 gaattaacac gaactcactt ccgcatgccg ggtgtcgatg ggcggttggt gctcgggcga
     1081 accgagtcgc cggtgtgctg gcgcgacgcg tcgccaaaca ttttgtttcc cttcttgcga
     1141 atgccgcgta aggcgggtgt ctggtccttc tcttcgcggt tctggtcggg attacctgcg
     1201 aagccggtct gctgcccgcg tggttttgcc ggtatgcctg ctttgtgctg atcctttact
     1261 cccaccttgt taatctccct tgcgtcccaa tgaccatttc aaactcgggg gcgttaccag
     1321 tgtggtgatg ataaccatga tcaccacagc gccgaaagtc gcggcgttaa taaccggctc
     1381 attcacaccg gcagccgtcg gcaacatcaa cgtcgcgcca ataccggcaa atatcaaacc
     1441 aacttcaccg cgcggaatca tccccagtcc caccgcaaca cgattcacgc cgcggtccat
     1501 caccgccaat ccgcaaacct gttttccaac aatcgccgca atcgtcagca tcgccgcaaa
     1561 acccagaatg tccagacgcg taaacagtcg cagatcgacc ttcaacccca tcaacacaaa
     1621 aaatatcggt acgagcaccg tactgaccgg ctgcaaaagg tcgttcaacc ctctttccgt
     1681 tcgtccgcct ttcggccggt agtgaacttc gtcgaggatc aaacccgccg caaacgctcc
     1741 gacaatcggc gccagctcaa ccttcgaagc cgcccacgcc agaaacaaac agaacgagat
     1801 cgccaacgtg agcaacacac cgcgcgtctc gagccggccc gcgcctcgca gcactcgcgg
     1861 cataaagaag tggccgatcg cgatcgccgc cactaaaaac agcaacgact tcgccgcgat
     1921 caaacccaca tcaaacagcg acaacacgcc gccgctcgcc gccgcacgaa tcgctcccgc
     1981 aaccgtcgcc agaatcaaca acccgagcac atcgtcgatc actgcggcgc cgagaattat
     2041 tcgtgcctca cgtgtcgcca gtttcccgag atctttgaaa acccgtgccg tgatgccaac
     2101 gctggtcgcg cacaacgtcg cgccgataaa aacgtgaacc aaccgcggct cttccggaat
     2161 gaaatacgcc gataccgccc aacccagaaa gaaaggcacg accacgccca tgaccgcgac
     2221 cagcaacgac gaccagccaa cctcgaccat ctccttcagg tcggattcca gtccgacttc
     2281 aaacagcagg atgatcacgc cgagctcggc cagagccgcg atcgtttcgt tagttttcag
     2341 aggttcagcg cccgtaaacc caaaaagcac gaggttgccg atgacgaccc c
//
LOCUS       DASWTX010000787         2598 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_295942, whole genome shotgun sequence.
ACCESSION   DASWTX010000787 DASWTX010000000
VERSION     DASWTX010000787.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2598
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295942"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2598)
                     /locus_tag="VGD38_11875"
     CDS             complement(<1..>2598)
                     /locus_tag="VGD38_11875"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEY0728763.1"
                     /translation="LRLNSDGSIPADNPFFSTLSGKYRAIWALGLRNPYSFDFANADG
                     KMFIGDVGEEAWEEINRGQAGANYGWPETEGVTNDPRFVSPFLVYNHDFTDSSGCAVT
                     TGAFYQPTTAQFPSQYTGRYFYTDFCVGWIRTMNPSTAETDLFAQFTNSPVDLKVANN
                     GTLYYLERGVDPNRNGAVFKIEFTERNAPAITTQPQNVTVAAGQQASFSVTASGTAPL
                     SYQWQRNGQNLNGQTSPTLTITATAGDNGATYRCVVSNQFGSTPSNAATLTVPPGGPP
                     TAAITQPASGTLYRGGDVIQFAGTGTDPDQGNLPASAFTWQVVFHHDTHTHPFLPPFS
                     GQTSGTFTIPTIGEVATDVWYRIHLTVTDSSGLSHSTFRDINPVVETISLSTNPAGMN
                     IKLDDQPHTTPFSIGTVAGVTRTLSAVALQQLNGQWYEFESWSDGGAATHNINRGGSY
                     IANYRLSPVQNEVVLYATDGIRVGNYQVVNDGTAAGGARLHNPDAGAAKQTTPLANPS
                     SYFELQFAAQAGVPFRLWIRSKAENDFWGNDSAFVQFSDSVDSNGAPVFRIGTTSATE
                     MNLEDCSGCGIQGWGWQDNGWGVGVLGPLVRFATSGMHTLRIQPREDGLSIDQVVLSP
                     AAFLNSGPGALMNDNTILSRSSGSPGPTPTPTPTPTPTPTPTPTPTPTPTPTPTPSPS
                     PTAPDEVVLYAAEGLRVGNYQVINDATAAGGGRMHNPDAGAAKLTNALANPGTYFELQ
                     FTATAGVSYRLWIRGKAQNDDPFNDSIFIQFNDSIDGQGAANHRIGTTSAEVINLEDC
                     FACGLSSWGWQDNGWGVGVLGPLVRFANNGTHTLRIQPREDGLSIDQVVLSPSLYLNT
                     APGAVVNDTT"
BASE COUNT          534 a          771 c          752 g          541 t
ORIGIN      
        1 gtggtgtcgt tcacgacggc gccgggcgcc gtgttcagat acagcgatgg cgacagcacg
       61 acctgatcga tcgagagtcc atcttcgcgc ggctggatgc gcaacgtgtg cgtgccgtta
      121 tttgcaaagc ggaccaatgg cccaagcacg ccgacgcccc aaccgttgtc ctgccaaccc
      181 cagctactca aaccgcacgc aaagcagtct tcgaggttga tgacctccgc gctggtagtg
      241 ccgatgcgat ggttcgcggc gccttgtcca tcaatgctgt cgttgaactg aatgaagatc
      301 gagtcgttga acggatcgtc attctgcgcc ttgccgcgaa tccacaagcg ataactgacg
      361 ccagcagtgg ccgtaaactg caactcgaaa tacgtgcccg gatttgcgag cgcgttcgtc
      421 agcttcgcgg cgcccgcgtc tggattatgc atgcgcccgc cgccggcagc ggtcgcatcg
      481 ttgatgacct ggtagtttcc aacacgcaat ccctccgcgg cgtaaagcac tacttcatcc
      541 ggagcagtcg gagacggcga cggtgttggc gtcggagtag gcgttggtgt cggagtgggc
      601 gtcggagtag gcgtcggagt aggcgtaggt gttggcgtcg gagttggacc aggcgagcca
      661 ctcgatcgcg acagtatcgt gttgtcgttc atcagcgctc ccggccccga gttcaaaaat
      721 gccgccggcg acagcaccac ctgatcgatc gacagtccat cctcgcgtgg ctgaatcctc
      781 agcgtgtgca taccgctggt cgcaaaacgg accaacggcc caagcacacc cacgccccag
      841 ccgttgtcct gccaacccca accctgaatt ccgcaacccg agcagtcttc gagattcatc
      901 tcggttgcgc tggtcgtacc gatacggaag accggtgcgc cattgctatc gacgctgtcg
      961 gagaactgaa cgaaagctga gtcgttgccc cagaagtcgt tctccgcctt gctgcgtatc
     1021 cacaaacgga aaggaacccc tgcctgcgcg gcgaactgca actcgaaata actactcgga
     1081 ttcgctaacg gtgttgtctg cttcgccgcg ccggcatccg gattgtgtaa gcgcgcaccg
     1141 cccgccgcgg tcccatcatt taccacctga tagtttccca cccgaatgcc gtccgttgca
     1201 tacaacacaa cttcgttctg caccggcgac agccgatagt tagcgatata acttccgcca
     1261 cgattgatgt tgtgcgttgc cgcgccgcca tcggaccacg actcgaactc gtaccactgc
     1321 ccattcaact gttgcagcgc gaccgcgctc aacgttcgcg tcacacccgc aacggttccg
     1381 atgctgaagg gagtcgtgtg tggctggtcg tcgagtttga tattcattcc ggccggattg
     1441 gtcgaaagag aaatcgtctc caccactgga ttgatgtcgc ggaaagtcga atgactcaaa
     1501 ccgcttgaat ccgtaacggt gaggtgtatg cgataccaca cgtcggtcgc gacttcacct
     1561 atcgtaggaa tcgtaaaggt tcccgaagtt tgacccgaaa atggcggaag aaacggatgt
     1621 gtgtgtgtgt cgtgatgaaa gaccacctgc cacgtgaaag cgctcgcagg cagattgccc
     1681 tgatcgggat cggtacccgt gcccgcaaat tgaatcacgt cgccgccgcg ataaagcgta
     1741 cctgacgcgg gctgcgtgat cgcggccgtc ggaggaccac cgggcggcac ggtgagtgtc
     1801 gccgcgttac tgggcgtgct gccaaactga ttcgacacga cacaccgata cgttgcgccg
     1861 ttgtcgccgg ccgtggcggt gatggtgagc gttggcgaag tctgaccgtt gagattttgt
     1921 ccgttgcgtt gccattgata actcagcggc gctgtacccg aagccgtcac tgaaaagctt
     1981 gcctgttgtc ccgcggcaac cgtgacgttt tgcggttgcg tggtaatcgc gggcgcgttg
     2041 cgttcggtga actcaatctt gaacaccgcg ccatttctgt tggggtcaac accgcgttcc
     2101 aggtagtaga gcgtgccgtt gttcgcgacc ttcagatcga cgggcgagtt cgtgaactgc
     2161 gcaaagagat cggtttccgc cgtgctcgga ttcatcgtgc gaatccagcc gacacagaaa
     2221 tccgtgtaga aataccggcc ggtgtactgg gagggaaact gagcagttgt tggttgatag
     2281 aaagcacccg tcgtcaccgc acaacccgag gaatcggtga aatcatggtt gtaaaccaga
     2341 aacggactca caaaacgcgg atcgttcgta acgccttccg tctcaggcca accgtagttt
     2401 gcgcccgcct gacctctgtt gatctcttcc cacgcttcct cgccaacgtc gccgatgaac
     2461 atcttcccgt cggcgttagc gaaatcaaaa ctgtacgggt tgcgcagacc aagcgcccaa
     2521 atggcgcggt acttaccact cagcgtcgag aagaacggat tgtcggccgg aatcgatcca
     2581 tcgctgttga ggcgcagg
//
LOCUS       DASWTX010000788         2140 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_269922, whole genome shotgun sequence.
ACCESSION   DASWTX010000788 DASWTX010000000
VERSION     DASWTX010000788.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2140
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269922"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            118..663
                     /locus_tag="VGD38_11880"
     CDS             118..663
                     /locus_tag="VGD38_11880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728764.1"
                     /translation="MPSGSISKILARGLRNAVGLKWVNNRLYATNMGSDHLGDNRPAD
                     TFYVMKDVAHYGWPYCYQTGPKVYFDPRFNPGGTKFNCGKVPTALVPFAAHSSPLGLE
                     YFDNSFLVALHGSTKERLRRGYRVVRVSESRPGVAEDFITGFFDGVRINGRPADIFKF
                     NENSFLLTDDYSGVVYYIYRK"
     gene            714..>2140
                     /locus_tag="VGD38_11885"
     CDS             714..>2140
                     /locus_tag="VGD38_11885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728765.1"
                     /translation="MRLRVSVLLIIVVSLAAPALAQKRSITEKDLFSFVWIGDPQVSP
                     DGSRVAFVRVSVNDKKDGYSTSIWTVATANGETRQLTNGPRDTTPRWSPDGKFLVFVR
                     APEVQGRTEPAQLFMLAMAGGEPFQFTTLPRGAGGPQWSPDGKHIAFYNSATPEELAK
                     AAPKPSPQNTGQPTPSPTPAERESDVRVINRAVYRMNGTGYLDFKHPNHIWIVTAPKT
                     GDEKVTPKQLTRGRFEDGSAFWARDSSRLYFVSNHNEEPYYELPSTDIYSVSINGGEP
                     SKFTTIDMGAAGFALSPDGKQVAFIGAVREPVRSYSQPDLWVMDMTSGAKPRNVTASF
                     DFDIGSGLTGDNVAPRGGGGNPPVWSADSRSINVVYVREGKANIGAFDVSSGRIADVT
                     SGNQAVVNFRTVPDAAKFAVLISTPTRIGDLYWLDKPAGQPRQLTRLNEELFSKLNLT
                     EPEEIWHTSFDGRKIQVWVQKPPGF"
BASE COUNT          451 a          632 c          625 g          432 t
ORIGIN      
        1 agtacggcgg ctggcatctc acgcgcacgg ttgtgatcgg cggcaacgga aagctctacg
       61 tgtctgtcgg cagcagttgt aacgcgtgcg aagagaagga agaagtagcg ctggttcttg
      121 ccgtcgggat ccatctccaa aatactcgcg cgcggtttgc gaaacgccgt gggcctgaag
      181 tgggtcaaca atcgcttgta cgcgacaaac atgggttccg atcacctcgg cgacaatcgt
      241 ccggctgaca cattttatgt aatgaaggac gtcgcgcatt acggttggcc ttattgttat
      301 caaaccgggc cgaaggttta cttcgatccg aggttcaatc cgggtgggac gaagtttaat
      361 tgcggcaaag ttccgacggc gctcgtgccg tttgcggcgc acagttcacc gctcggtttg
      421 gagtatttcg acaattcatt tctcgtcgca ttgcacggct cgacaaagga acgcctgcgc
      481 cgcggctatc gcgtggtgcg cgtcagtgaa tcgcgtcccg gcgtcgctga agatttcatc
      541 acgggctttt tcgacggcgt acgcatcaac ggccgccccg cggacatctt caagttcaac
      601 gaaaatagtt ttcttttgac cgacgactac agcggcgtcg tttattacat ttatcgcaag
      661 tagtacaata cgcgcgcccg cgttgccaca ccgttcgccg aaaggaatcc aaaatgcgcc
      721 ttcgtgtctc tgttctcctg atcatcgtcg tctctttggc cgcgcccgca ctggcccaaa
      781 agcgcagcat caccgaaaag gatctgttca gtttcgtgtg gattggcgat ccgcaggtgt
      841 cgcctgatgg ctcgcgcgtc gcgtttgtgc gcgtcagcgt caacgacaag aaagacggtt
      901 acagcacttc gatttggact gtcgcgaccg ctaacggtga aacacgccag ttgacgaacg
      961 gcccgcgcga cacgacgccg cgctggtcgc cggatggaaa gtttctcgtc ttcgtgcgcg
     1021 cgccggaggt gcagggacga acggagccgg cgcaactctt catgttggca atggccggcg
     1081 gcgaaccgtt tcagtttacg accttgccac gcggcgctgg tggtccacaa tggtcgcctg
     1141 acgggaagca catcgcgttc tacaacagcg cgacaccgga agagctcgcg aaagccgcgc
     1201 caaaaccgtc gcctcaaaac acaggtcagc caacgccgag tccgacaccc gccgaacgcg
     1261 aaagcgacgt gcgtgtgatc aatcgcgcgg tctatcgcat gaacggtacg ggttacctgg
     1321 acttcaaaca tccgaaccac atctggatcg ttaccgcgcc aaaaacgggc gatgaaaaag
     1381 tcacgcccaa acagctaacc cgcgggcgtt ttgaagatgg cagcgcgttc tgggccaggg
     1441 acagttcgcg gctttacttc gtttccaatc acaacgagga gccttactac gaactgccga
     1501 gcaccgacat ctattccgtt tcgatcaacg gcggcgagcc gtcgaaattc accacgatcg
     1561 acatgggcgc cgcgggcttc gcgctcagtc ctgacggaaa acaagtcgct ttcatcggtg
     1621 cggttcgcga gcccgttcgt tcgtattcgc aacccgatct ttgggtgatg gacatgacgt
     1681 caggcgcgaa gccgcgcaac gtcaccgcga gtttcgattt cgacatcggc agcggactga
     1741 cgggcgacaa cgttgcgccg cgcggcggcg gcggcaatcc gcctgtttgg tcggctgact
     1801 cacgcagcat caacgtcgtc tatgttcgcg aaggaaaagc gaacatcggt gcgtttgacg
     1861 tctcgagcgg acgaatcgcg gatgtcacca gcggcaacca ggcggtcgtt aacttccgca
     1921 ccgtgcccga cgcggcgaag ttcgcggtgt tgatctcgac cccgacgcgc atcggcgatc
     1981 tctactggct cgacaaacct gccggccagc cgcgacaact gacgcgtctc aatgaagagc
     2041 tcttctcgaa actgaacctg accgagcccg aggagatctg gcacacgagt ttcgacggcc
     2101 gtaagattca ggtgtgggtg cagaagccgc ccggcttcga
//
LOCUS       DASWTX010000789         3732 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_295957, whole genome shotgun sequence.
ACCESSION   DASWTX010000789 DASWTX010000000
VERSION     DASWTX010000789.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3732
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295957"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..630)
                     /locus_tag="VGD38_11890"
     CDS             complement(<1..630)
                     /locus_tag="VGD38_11890"
                     /inference="COORDINATES: protein motif:HMM:NF014027.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008612 - peptidyl-lysine modification to
                     peptidyl-hypusine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase family protein"
                     /protein_id="HEY0728766.1"
                     /translation="MKHKSKFLRGKRIDPAPIAKEISVADLIDESFLAYNAARLREAC
                     QLFTRKMLEPEVTVGLSLTGALTPAGLGISALIPLIKAGFIDWIISTGANLYHDTHFG
                     IGLSMHLGNAQTSDIVLREEEVVRIYDIFFDYSVLLDTDAFFRRIIEGAEFQRAMSTA
                     EFHYLCGRYVHEREKKLGIQDKSLLAVAYEYAVPIYTSSPGDSSIGMNVA"
     gene            complement(590..1924)
                     /locus_tag="VGD38_11895"
     CDS             complement(590..1924)
                     /locus_tag="VGD38_11895"
                     /inference="COORDINATES: protein motif:HMM:NF013741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HEY0728767.1"
                     /translation="MELEIGLTLLLLILLSLLATVDMAFAQLSDVGLRRLTGENGDKP
                     ESRSRMFLRQALENRARFAFALSSTIQILLVVVAVLITSIAWSLFQDVRMVPTGLLAG
                     LILAGIFRQLIPLFIATRNPEKTLLFLVPLIRPFFPLMSFLADPFQRLFDRSRRNKEH
                     VTETGDVEEEDDDSGDLQALIDVGEAEGILEEEEGELIHSIIEFGDTKVSEVMTPRPD
                     IVAVPVTATIREARDVMVESKYSRLPVYREQIDNVEGIIYVRDLLLCWAEGRENENIG
                     PLVRSVYFIPETKPVADLLEEMQKAHVQLAMVIDEYGGVCGLVTVEDILEEIVGEIED
                     EDIAGEELEEIVEGPDGFYEVPGSTEIGKIEQLFDMEIEADDFTTIAGLVINEQGTVP
                     NVGERLEIRGLEVEVLEADERRISRLRVRAKPETVTDETDETQKQISAGKKN"
     gene            complement(1955..2365)
                     /gene="ybeY"
                     /locus_tag="VGD38_11900"
     CDS             complement(1955..2365)
                     /gene="ybeY"
                     /locus_tag="VGD38_11900"
                     /inference="COORDINATES: protein motif:HMM:TIGR00043.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEY0728768.1"
                     /translation="MIEAVNRQRKTRIDTKAWESFAGKAATAIGNPDAAATIAFVSDK
                     AIRQLNQQFRNVDKATDVLSFPADETDKLNLGDIAISVETAARQAKENGLTFDEEVAQ
                     LILHGLLHLSGYDHETDNGEMNRLELKLRRRLGI"
     gene            complement(2368..3321)
                     /locus_tag="VGD38_11905"
     CDS             complement(2368..3321)
                     /locus_tag="VGD38_11905"
                     /inference="COORDINATES: protein motif:HMM:NF014605.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HEY0728769.1"
                     /translation="MIKIELPPRGLETLFGVHDQNIKYLESLLDVRIDARGQDVSIDG
                     DPADVETAQSILEDFSDLFKEGKHFTDKELREAFAQIAEDRAFSLRDYFTKARFNPAG
                     KKQVAPKSANQRKYIQAIQEKDVVFGIGVAGTGKTYLAVAMAVQALMQKQVNRIVLAR
                     PAVEAGEKLGFLPGDLQDKVDPYLRPLYDALFDLMDYERVTRLLEKRVVEVAPLAFMR
                     GRTLSDAFIILDEAQNTTSEQMKMFLTRIGFGSKAVITGDVTQVDLPTGKRSGLIEAE
                     RILSNLEGIEFVYFTDKDVVRHKLVQMIIRAYEEQSRKNQI"
     gene            3448..3714
                     /gene="rpsT"
                     /locus_tag="VGD38_11910"
     CDS             3448..3714
                     /gene="rpsT"
                     /locus_tag="VGD38_11910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019080555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEY0728770.1"
                     /translation="MPNHKSAEKRVRQSEKRRLINRSHRTKVRTYIKKVRAALASGSA
                     QEVQSVLPEAISVIDKSVQKGVMHANAAARYKSRLTAQANQVGK"
BASE COUNT          767 a         1043 c         1075 g          847 t
ORIGIN      
        1 agcgacgttc attccgatcg atgagtcgcc cggcgatgaa gtgtagatcg gcacggcata
       61 ctcgtaagca acagcgagca gtgacttgtc ctggatgccc aatttctttt cacgctcgtg
      121 aacgtaacgg ccgcacaagt aatgaaactc agcggtggac atcgcgcgtt gaaactcagc
      181 gccttcgatg atgcgacgga agaacgcgtc cgtgtcgagc agcaccgagt agtcgaaaaa
      241 gatgtcgtag atacgcacga cctcttcttc gcgcaggacg atgtccgacg tctgcgcgtt
      301 gcccaggtgc atcgagagac cgatgccgaa gtgcgtatcg tgataaagat tggcgccagt
      361 ggagatgatc cagtcgatga agcccgcttt gattagcggg atcagcgccg aaatcccgag
      421 tcccgcgggc gtcagcgccc ctgtgagcga gagcccgacc gtcacttccg gttcgagcat
      481 cttccgcgtg aacagttgac acgcttcgcg cagccgcgcg gcgttgtaag ccaggaatga
      541 ttcgtcgatt aaatctgcga ccgagatctc ttttgcgatg ggcgcgggat caattctttt
      601 tccccgcaga aatttgcttt tgtgtttcat ccgtttcgtc agtgactgtc tccggcttgg
      661 ctctcacgcg caggcggctg atgcgacgtt cgtcagcttc gagcacctca acttcgagtc
      721 cgcgaatttc gagccgctcg ccgacgtttg gtacggtccc ttgttcgttg attacgagtc
      781 cggcgatggt cgtgaaatcg tcagcctcga tctccatatc aaacaactgt tcgatcttgc
      841 caatctctgt cgatcccggc acttcataga acccgtcagg accttcgacg atctcttcca
      901 actcttcgcc cgcgatgtct tcgtcttcga tctcgccgac gatctcttcg agaatgtctt
      961 ccactgtcac gagaccgcag acgccgccat attcgtcaat caccatcgcc aactgcacgt
     1021 gggccttctg catctcttcg agcagatcgg cgacgggttt ggtttccggt atgaaataaa
     1081 ccgagcgcac gagtggtcca atgttttcgt tttcacggcc ctcggcccag cagagcaaaa
     1141 gatcgcgcac gtaaatgatg ccttcgacgt tgtcgatctg ttcgcgataa accggcaggc
     1201 gcgaatactt cgattcgacc atgacgtcac gcgcttcgcg aatcgtagcc gtgacaggca
     1261 ccgcgacgat gtccggacgc ggggtcatca cttcgctcac cttcgtgtcg ccaaactcga
     1321 tgatcgagtg aatcagctcg ccttcttcct cttcgaggat accttctgct tcgccgacgt
     1381 cgatcagcgc ctgcagatcg ccgctgtcgt cgtcttcctc ttcaacgtcg cccgtttccg
     1441 taacgtgttc cttgttgcgg cgcgagcggt caaacagccg ctgaaacgga tcggcaagga
     1501 aggacatgag cgggaagaac ggtcgaataa gcggaacgag gaagagcagc gtcttttccg
     1561 gatttcgcgt ggcgatgaag agcggaatga gttggcggaa aatgcctgcc aggatcaggc
     1621 cggcgagcag gccggtcggc accatgcgta catcctgaaa aagactccac gcgatggaag
     1681 tgatgagcac ggcgacgacg accagcagga tctggatcgt cgaggagagt gcgaaagcaa
     1741 accgcgcccg gttctccagc gcttgtcgca ggaacattcg cgagcgcgat tcgggcttgt
     1801 caccgttctc gccggtaagg cggcgcagcc cgacgtcgct tagctgagcg aaggccatgt
     1861 cgaccgtggc cagcaaggag agcagtatca gcagcaggag cgtcagccct atttcaagtt
     1921 ccatcgataa agggaatagt aaattaactg gactctaaat ccctagcctc cgcctgagct
     1981 tgagctccaa acgattcatt tcaccgttgt cggtttcgtg atcgtaaccg gagagatgca
     2041 gcaggccgtg aagaatcaat tgcgcgactt cttcgtcgaa cgtcaggccg ttctctttcg
     2101 cctgtctcgc ggcagtttcg actgaaatgg cgatgtcgcc gaggttgagt ttgtccgttt
     2161 cgtcagcagg aaacgacaac acatcggttg ctttatcgac gttgcgaaac tgttgattga
     2221 gctggcgaat ggctttgtcg gaaacgaagg cgattgttgc cgctgcgtca gggtttccaa
     2281 ttgcagtggc ggctttgccg gcgaaagact cccacgcttt cgtgtcgatc cgtgttttcc
     2341 tttgacgatt gaccgcttcg atcacggcta gatctgattc ttcctgctct gttcttcgta
     2401 agcgcggatg atcatctgga ccagtttgtg acgcaccacg tccttgtcgg tgaagtagac
     2461 aaactcgatt ccttcgaggt tcgagaggat gcgttccgct tcgattagac cactgcgttt
     2521 gcccgtcggc agatcgacct gcgtgacgtc gccggtgatg acggctttgg agccgaagcc
     2581 gatgcgcgtg agaaacatct tcatctgctc gctcgtcgtg ttttgcgctt cgtcgagaat
     2641 gatgaacgcg tccgagagcg tgcggccgcg catgaacgcg agcggtgcga cttcgacgac
     2701 tcgtttctcg agcaagcgcg tgacgcgttc gtagtccatc agatcaaaca gcgcgtcgta
     2761 aagcgggcgg agatacgggt ccaccttgtc ctgcaggtcg ccgggcagaa aaccgagctt
     2821 ctcgccggct tcgaccgcgg ggcgcgccag cacgatgcgg ttcacctgtt tctgcatcag
     2881 cgcctggacc gccatcgcca ccgcgagata agttttgccc gtgccggcca cgccgatgcc
     2941 gaagacgacg tccttttcct gaatcgcctg gatgtacttg cgctggttcg cagacttcgg
     3001 cgcgacctgt tttttgccgg ccgggttgaa gcgcgctttg gtgaagtagt cgcgcaggct
     3061 gaacgcgcgg tcctcagcga tttgggcgaa ggcctcgcgc aactctttat cggtgaagtg
     3121 ttttccttct ttgaaaaggt cggaaaaatc ttcgaggata ctctgtgcgg tttccacatc
     3181 ggccgggtcg ccgtcgatgg acacgtcctg gccgcgcgcg tcaattctta cgtcaagcag
     3241 agattcgaga tacttgatgt tctggtcgtg aacgccaaaa agcgtctcca agcccctggg
     3301 gggcagttca atcttaatca ttggccaaag attagcatga atctgtgtca tccgtgtgga
     3361 ctggcggggc gtccttgaca cacttgcggg gcgtccctat actcctccac ttgcgcctga
     3421 acccgggtgc atccaggaga ggaattaatg ccgaatcata aatcagccga gaagcgcgtg
     3481 cgccagagcg agaagcgccg cctaattaat cgcagtcacc gtactaaggt caggacttac
     3541 atcaagaagg tccgcgccgc gttggcgtcg ggatcggcgc aggaagtgca gagcgtgctg
     3601 cctgaggcga tttccgtgat cgacaagtca gtgcagaagg gcgtgatgca tgcgaatgcg
     3661 gctgcgcgtt acaagtcgag gctgacggca caggcgaacc aggtcggcaa gtaagagtta
     3721 actaaaaatt tt
//
LOCUS       DASWTX010000790         1870 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_139646, whole genome shotgun sequence.
ACCESSION   DASWTX010000790 DASWTX010000000
VERSION     DASWTX010000790.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1870)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1870
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139646"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1053)
                     /locus_tag="VGD38_11915"
     CDS             complement(<1..1053)
                     /locus_tag="VGD38_11915"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HEY0728771.1"
                     /translation="MFLLQANTTSLISVTDLQLIVPELILTFCACVALVMEVILPYRK
                     SKLTAYFALVAVGLAFVSLAVQWRYMPALMSEGFYGMVRIDGFALLFKAIFLFAAGLA
                     IAISTRYLDVEGEQHGEYYSLVLFATVGMMFIACGYDLISLYISLELMALTFYILVAF
                     TKREKRSNEAAMKYFLLGAFSSGVLLYGMSLLYGIAGSTNIGEIGNAFASTMPKVQEA
                     VDAVRAGTANSDQEMWAGLRPLMLLGMIALSAGLFFKVAAVPFHMWAPDVYEGAPTSV
                     TAFLSTGSKAASFALYARIFNEALGGMREDWAPMLGLVAAITIMVGNWAAVTQENSKR
                     LLAYSSISNAGYLLLAL"
     gene            complement(1061..>1870)
                     /locus_tag="VGD38_11920"
     CDS             complement(1061..>1870)
                     /locus_tag="VGD38_11920"
                     /inference="COORDINATES: protein motif:HMM:NF012581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HEY0728772.1"
                     /translation="TYGFYRFNLPMFPKASRDQSSWVTSFGTFGVRSVVVFLAIVSII
                     YGALAAMYFVVKKDGDVKKLVAYSSVSSMGMVMLGLFALNPNGVNGGVLQMINHGIYS
                     GALFLLVGIIYERRHTRNVSEFGGLSHVMPGYAAIFLGMVMTAIGLPLLAVFISEFLA
                     LRGAFEANPWWAGWAALGIILNAGYFLWLYQRMFFGNTENPKNQKLTDLNIREWAYMV
                     PLMILSLWIGVYPKPFLEFIQQPVNAIVKQVRPDYVIPGTAAPAQAERAEK"
BASE COUNT          459 a          562 c          503 g          346 t
ORIGIN      
        1 gagagcgagt agtaagtagc ctgcgttgga gattgaagag tatgcgagca ggcgtttgga
       61 attttcctgg gtcactgccg cccagttgcc aaccatgatc gtgatggccg cgacgagtcc
      121 cagcattggc gcccagtctt cacgcattcc gccgagcgct tcgttgaaga ttcgcgcgta
      181 caacgcgaaa ctcgcagcct tcgagccggt tgaaagaaat gcagtcactg aagtcggcgc
      241 gccttcgtaa acgtcaggcg cccacatgtg aaacggcact gccgcgactt tgaagaacaa
      301 tcccgcactc agcgcgatca tccccaacaa catcagcggc cgcagacccg cccacatctc
      361 ctggtcactg tttgccgtgc ccgcccgtac agcatccacc gcttcctgga cctttggcat
      421 cgtgctggca aaagcattgc caatctcgcc gatgttcgtc gaaccggcaa tcccgtaaag
      481 cagcgacatt ccatacagca gcacgcccga cgaaaacgcg ccaagcagaa agtacttcat
      541 cgccgcttcg ttcgaacgct tctcgcgttt ggtgaacgcg acgaggatgt agaacgtcag
      601 cgccatcagt tccagactga tgtacagcga aatcagatcg taaccgcagg cgatgaacat
      661 catgccgacg gtcgcaaaga gcaccagcga gtagtattcg ccgtgctgtt cgccttcgac
      721 gtcgagataa cgcgtcgaaa tcgcgatggc gagtcccgcc gcaaagagaa agatcgcttt
      781 aaataggagc gcgaagccgt cgatacggac catgccgtag aacccttcgg acatcaacgc
      841 cggcatgtag cgccactgca ccgcgagtga aacgaaagcg agcccgacgg cgacgagcgc
      901 gaagtaagca gtgagcttgc tcttgcgata cggaaggatg acttccatca caagcgccac
      961 gcacgcgcaa aacgtgagga tcaactccgg cacgatcagt tgcagatccg tgacgctgat
     1021 tagagacgtg gtgttggctt gcaagagaaa cattgttcgc ttatttctcc gcgcgttctg
     1081 cctgcgccgg cgcggcggtt cccggaatca cgtaatccgg tctgacctgc ttcacgatcg
     1141 cgttcaccgg ttgctggatg aattcgagaa acggtttcgg atagacgccg atccacagcg
     1201 agagaatcat gagcggcacc atgtaggccc actcgcgaat gttcaggtcc gtgagtttct
     1261 ggttcttcgg attctcggtg ttaccgaaaa acatgcgctg gtagagccac aggaaataac
     1321 cggcgttgag aataattccc agcgcagccc aacccgccca ccacggattc gcctcgaagg
     1381 cgccgcgcag cgcgagaaat tccgagatga acaccgcgag cagcggcaga ccgatcgccg
     1441 tcatcaccat accgagaaag atcgcggcgt aacccggcat cacgtgcgac agtccgccaa
     1501 actcagaaac gttacgcgtg tgacgccgtt cgtaaattat gccgaccagc aaaaacagcg
     1561 cgccggagta gatgccgtga ttgatcatct gcagcacgcc gccgttgacg ccgttgggat
     1621 tgagcgcgaa aagcccgagc atcaccatgc ccatcgacga caccgatgag tacgcgacga
     1681 gtttcttcac gtcgccgtct ttcttcacga cgaaatacat cgccgcgagc gcgccgtaga
     1741 tgatgctgac gatcgccaga aacaccacca cacttcgcac gccaaacgtt ccaaagcttg
     1801 taacccaact cgactggtcc ctcgatgctt tcggaaacat cggcaggttg aaacgataga
     1861 aaccgtaagt
//
LOCUS       DASWTX010000791         2218 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_406026, whole genome shotgun sequence.
ACCESSION   DASWTX010000791 DASWTX010000000
VERSION     DASWTX010000791.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2218
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_406026"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..280)
                     /locus_tag="VGD38_11925"
     CDS             complement(<1..280)
                     /locus_tag="VGD38_11925"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HEY0728773.1"
                     /translation="MIHIGPAGWSYKDWEGTVYPQKPGKNFDPLEYLARFFNTIEINS
                     SFYRPPTTSTTKAWANRVSHNKEFTFTAKLHRLFTHERGKATAEDEKEF"
     gene            389..1372
                     /gene="selD"
                     /locus_tag="VGD38_11930"
                     /pseudo
     CDS             389..1372
                     /gene="selD"
                     /locus_tag="VGD38_11930"
                     /inference="COORDINATES: protein motif:HMM:NF002098.0"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004756 - selenide, water dikinase
                     activity [Evidence IEA];
                     GO_process: GO:0001887 - selenium compound metabolic
                     process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
     gene            1402..>2218
                     /locus_tag="VGD38_11935"
     CDS             1402..>2218
                     /locus_tag="VGD38_11935"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUMF1/EgtB/PvdO family nonheme iron enzyme"
                     /protein_id="HEY0728774.1"
                     /translation="MDLYKRVRARTMEIVAPLEIEDYVIQTAEFMSPPRWHIGHTSWF
                     FETVLQAHKPGYKVYSEEFLFYFNSYYEGFGARIERPKRGTKSRPTVRETVAYRNHID
                     EEMLAFLPSADQSVLSVVRLGLEHEMQHQELLVYDIKHLLCDQFQPKINPLPKPVSRV
                     EGMAEVEGGLFLLGFEGEGFSWDNEKPAHQVFLQDFAIDRALVTNGEFLEFMRDGGYQ
                     NFRWWFSEGWETVKSESWEAPLYWELHDGEWTIRDFTGLHSVDARADEPVSHVS"
BASE COUNT          489 a          578 c          651 g          500 t
ORIGIN      
        1 tgaattcttt ttcatcctca gccgtcgctt tgccgcgttc gtgagtgaaa agccggtgta
       61 gtttggcggt gaaagtgaat tctttattgt gcgaaacgcg attggcccag gctttcgtgg
      121 ttgacgtagt tggcgggcga tagaagctgc tgttgatctc gatcgtgttg aagaaacgcg
      181 cgagatattc gagcggatcg aagttctttc ccggcttctg cgggtagacg gttccttccc
      241 agtctttgta agaccaacct gccggtccga tgtggatcat taatcaactc ctgcccaact
      301 atggtaaaac acaatcaaat agaaaggagg tgcccgaacg atgcgtctga ctgagatggt
      361 ctcgtgctcc ggttgagcgg cgaagcttag cccgagctta ctcgctcaag ttttgagcga
      421 gctaccgaaa caacccgccg atccaaacct gattgtcggc ttcgacacag ccgacgacgc
      481 gggagtatac cgtctccgcg acgacctcgc tttggtgcaa accctcgatt tctttacgcc
      541 catcgtagac gacccgttcg attacggccg catcagcgcg ctcaattcga tcaacgacgt
      601 ttgggccatg gccggaacgc cgatcacggc gatggcgatc acgtgctttc caaaaacggg
      661 cgtcgatcct gcgattctcc gggagatcat gcgcggtgga ctcgaaacac tcaaccgcta
      721 cggcgtgacg ttgattggcg ggcacagtgt cgacaacgcg cagatcatgt ttggttactc
      781 ggttacgggg cttatcaatc ccgatcaggt ggcgagaaat tccggcgcgc aagacggcga
      841 cttgatcatt ctcacgaaac cgatcggcac gggtgttatt tccaccggga tcaaaaaagc
      901 ccgcgccagt gaagagatcg tgtcggcttc agttcaaaca atgttgacgc cgggcaagca
      961 cgcggctgaa gcgatgcgcg agtttggagt gaagggcgcg actgacgtca ctggtttcgc
     1021 gttgctcggt catgcgtggg aaatggcgtg cgggagtaag gtgacgatcg agatctttgc
     1081 ctgcgcggtg ccgttgctcg acggcgcttt ggaactggcg actgcgggat tgttgacgag
     1141 cggcgacaaa accaaccgag aatacgtcgg cgaagacatc gaggtcgcgt cttcagtcga
     1201 tgcaaacctg ttgaggttgt tgtttgatcc gcaaaccgcc ggcggaatgc tgatcgcagt
     1261 tgctgaagag aaagcggagg cgctgctcaa caagctgcgc gagtattatc cccgagcaca
     1321 aataatcgga cgcgtttctc cccgcggctc acgctcgatc gtcgtgagct agtattattg
     1381 accgcaataa tcatggacat aatggattta tacaagcggg ttcgtgcgcg cacgatggag
     1441 atcgttgcgc cgctcgagat agaagactat gtgattcaaa cggcggagtt catgagtccg
     1501 ccgcgttggc acatcggtca cacttcgtgg ttcttcgaga ctgtgctcca ggctcacaag
     1561 ccgggataca aggtctactc cgaagagttt ctgttctact tcaattcgta ttacgaaggc
     1621 ttcggggcga ggatcgaacg tcccaagcgc ggcacgaagt cgcggccgac cgtgcgcgaa
     1681 acggtcgcgt accgcaatca catcgacgag gagatgctcg cgtttttacc ctccgccgat
     1741 caatccgtgt tatctgtggt caggctgggt ctcgagcacg agatgcagca tcaggagttg
     1801 ctggtctacg acatcaagca cctgctttgc gatcagtttc agccgaagat caacccgctg
     1861 ccgaaaccag tttcgagagt agaaggcatg gctgaagtcg aaggcggcct gttcttgttg
     1921 ggttttgaag gagagggatt ttcgtgggac aacgagaaac ccgctcacca ggtcttctta
     1981 caggatttcg caatcgatcg cgcgctggtt acgaatggcg aatttcttga gttcatgcgc
     2041 gatggcggtt atcaaaactt ccgctggtgg ttctccgaag gctgggaaac agtcaaaagc
     2101 gaaagctggg aagcgccgct ttactgggaa ctgcacgacg gcgaatggac gattcgcgac
     2161 ttcaccgggc tacactcagt cgacgctcgc gctgacgaac ccgtctcgca cgtcagct
//
LOCUS       DASWTX010000792         1695 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_248052, whole genome shotgun sequence.
ACCESSION   DASWTX010000792 DASWTX010000000
VERSION     DASWTX010000792.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1695
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248052"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1255)
                     /locus_tag="VGD38_11940"
     CDS             complement(<1..1255)
                     /locus_tag="VGD38_11940"
                     /inference="COORDINATES: protein motif:HMM:NF012245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098561 - methyl accepting chemotaxis
                     protein complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEY0728775.1"
                     /translation="MGQVRAFLDRIQGRLLAAFLMAIIGTLTIWYVGHSSLRKFAADT
                     SRQIDQVYQASDFGNRLQAGIMGQIAVGERLLSAPTPETQATFDSLTIEVREAWAKYN
                     TADSLRLTENSRKQLKKVAFLHTQIEAAYRTRSQESVAAVGPAVDETRAILNGLQSTT
                     MTQLAAMPASLLTYANERTKLMGILLLVMALIAGYFIWSTFAAIDKPLNKLVIAANQL
                     GEGDLNVSLNGRMPEEFRVLSGAFNSMADRFRNIVGETVSAAQKIGSSAHDLSSISEQ
                     VAASSGQVSTAMVGITSGAEEQASGLRTVNEALEDIRRRAEEIDSSTDRVRDLSEQIR
                     SLAEAKRIDIGRALSMLLELRQVVQSSRQEVTGLERASETITNFVATIQGLARQTNLL
                     ALNAAIEAARAGEHGRGFAVVAEEVR"
     gene            1363..>1695
                     /locus_tag="VGD38_11945"
     CDS             1363..>1695
                     /locus_tag="VGD38_11945"
                     /inference="COORDINATES: protein motif:HMM:NF019656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1707 domain-containing protein"
                     /protein_id="HEY0728776.1"
                     /translation="MPLQARRDETIAALCEHFSRDHLTLEEFERRLDLAHSVQTVPDL
                     SALIQDLPVLATPPTPAVGSTPGVGARVARHVTESNHFVAVMGGFERRGQWQPAQKNF
                     CYAFMGGVG"
BASE COUNT          342 a          485 c          499 g          369 t
ORIGIN      
        1 tgcgaacttc ttcggcaacg acagcgaagc cgcggccgtg ctcgccggca cgcgcagctt
       61 caatcgccgc gttgagcgcc agcaggttgg tttgccgcgc cagaccctga atcgtcgcca
      121 cgaagttggt aatcgtttcg gatgcccgtt cgagtccggt gacttcctgc cgtgacgatt
      181 gcaccacctg gcgcagctcg agcagcatgg agagcgcgcg cccaatgtcg atgcgcttgg
      241 cttcggcgag tgaacgaatc tgctcgctca aatcgcgcac gcgatcggta gacgagtcga
      301 tctcttcagc acgacgtcga atatcttcca gtgcttcgtt caccgtgcgc agaccggaag
      361 cctgctcctc ggcgccggag gttatgccga ccatcgcagt agagacctga ccgctcgagg
      421 cggccacctg ctcggagatg ctggaaaggt cgtgcgcgga cgaaccaatc ttctgagccg
      481 cggaaaccgt ttcgcctacg atgttgcgga agcgatcggc catcgagttg aatgcaccgg
      541 acagcacgcg gaattcttcc ggcatgcgcc cgttcaacga aacgttgaga tcgccttcac
      601 ccagttggtt agcggcaatt accagcttgt tgagtggctt gtcgatggcg gcgaaagtcg
      661 accagatgaa gtaaccggca atcaaggcca tcaccagcag tagaatgccc attagcttcg
      721 tacgctcatt tgcgtaagtc agcaaactgg caggcatggc ggctagttgc gtcatcgtgg
      781 tgctttgcaa cccattcagg attgcacgcg tttcatctac agcaggtccg actgcggcca
      841 cgctctcctg gctgcgagta cgataggcag cttcgatttg tgtatggaga aacgcgactt
      901 tcttcagctg tttgcgggaa ttctcagtga gacgcagcga atcggcggtg ttatacttgg
      961 cccacgcttc acgcacctcg atggtcaggc tgtcgaaagt cgcctgcgtt tccggtgtcg
     1021 gcgcgctcaa gagccgttcg ccgacggcaa tctgccccat gatgccggct tgcagacgat
     1081 ttccgaagtc agacgcctgg tagacctgat cgatttgacg acttgtatcc gcggcgaatt
     1141 tgcgcagcga gctgtgaccc acgtaccaga tcgtgagtgt gccaatgatg gccatcagaa
     1201 acgcagctag cagccgccct tgaatacgat caaggaacgc tcgaacttgt cccattaccg
     1261 gaacctttag aattttgccg gggattgctg cgaaagttag gccgaaaatg cctgtgagtc
     1321 aacgacttcg gccattgcaa aggatataga ttggattcat tggtgccatt acaggcgcgt
     1381 cgtgacgaaa cgattgctgc attgtgcgaa catttttcgc gagatcacct cacgctcgag
     1441 gaattcgagc gcagactcga cctcgcgcac tcagttcaga ccgttcccga cttgtcggcg
     1501 ctgattcagg atctcccggt tttggccacg ccgcccacgc cagcagtcgg gagcacgcca
     1561 ggcgtggggg cacgtgtcgc ccgtcacgtg acggagtcca atcacttcgt ggccgtgatg
     1621 ggtggctttg agcgacgtgg tcagtggcag cccgcgcaga aaaatttctg ctacgcgttc
     1681 atgggtggtg ttggt
//
LOCUS       DASWTX010000793         2098 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_362573, whole genome shotgun sequence.
ACCESSION   DASWTX010000793 DASWTX010000000
VERSION     DASWTX010000793.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2098
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362573"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1415
                     /locus_tag="VGD38_11950"
     CDS             <1..1415
                     /locus_tag="VGD38_11950"
                     /inference="COORDINATES: protein motif:HMM:NF013125.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lamin tail domain-containing protein"
                     /protein_id="HEY0728777.1"
                     /translation="VPTLAFDNTAIATFVVRVNQDSPRGTLISNTVNGTSDTSDPDPE
                     NNSATAVTAVTGPFPGDILISEFRLRGPGGAADEFIEIYNNTDTPIAVSTTDNSSGWA
                     IAASDGVIRFVIPNGTIIPARGHFLGVNSIGYSLSSYPSGNDGVEPAFADGDATYTTD
                     IPDNAGIAIFRTADTANFSTSTRLDAVGSTAEPNTLYKEGTGYPALTPFSIDYAFVRD
                     TCGKSGSITTFGLCSTNGLPKDTDNNAVDFYFVDTNGTSAGAGQRLGAPGPQNLTSPT
                     QQNAAMPVLNLDQTVGSSAAPNRVRNLTSDPANNSTFGTIDFRRRVVNTTGFPVTRLR
                     FRIIDITTFPAPSGIADLRVRTSTDVTVNGVNDPATCPGGATPCSITVLGTTLEQPPT
                     QLNGGAFNSSLSADTITLSTPLAAGESINLHFLFGIQQTGAFKFYFNVELLTDQSEPP
                     PIEELSVILGHDPKRRLSTF"
     gene            1630..>2098
                     /locus_tag="VGD38_11955"
     CDS             1630..>2098
                     /locus_tag="VGD38_11955"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0728778.1"
                     /translation="MARLKYLSGCTILILLVLAPTSLAQTSKGFVVGTITDPNGAAVP
                     AATIKITNTATGVARETTTQEDGSYRFDAVDPGTYRLEVTATGFKTATRDVVVAAAQT
                     ADATLPLEIGNPSEVVTVTSGTPVELQTQDGARVNTIGARQITEMPVQGLNPVN"
BASE COUNT          492 a          699 c          505 g          402 t
ORIGIN      
        1 cggtccccac gctcgccttc gacaatacgg caatcgccac gtttgtcgtg cgagtcaacc
       61 aggactcacc gcgcggtacg ctgatcagca acaccgtcaa cggcacgtcc gacacatccg
      121 atcccgatcc cgaaaacaac tccgcgaccg cagtgaccgc agtcactggt ccattcccgg
      181 gcgacattct gatcagcgaa tttcgactgc gcggccctgg cggcgcggca gatgaattca
      241 tcgagatcta caacaacacc gacacaccaa ttgccgtgag caccacggac aactcgtccg
      301 gttgggccat cgcagcttcg gacggcgtca tccgcttcgt catcccgaac ggcacgatca
      361 tccccgcgcg cggacacttc ctcggcgtca actccatcgg ctacagcctt tcgtcatacc
      421 catccggcaa cgacggcgtg gaaccggcgt tcgcagatgg cgacgccact tacacaaccg
      481 acatccccga caacgcaggc atcgccatct tccgcacggc agacacagca aacttctcca
      541 cgtcgacgcg gctcgacgcc gtcggctcaa ccgcagagcc aaacacgctc tacaaggaag
      601 gcacgggcta tccagcgctg actcctttta gtattgacta cgcgttcgtc cgcgacacgt
      661 gcggcaaaag cggttcgata acgaccttcg gcctctgctc gacgaacggc ttgccaaaag
      721 acaccgacaa caacgccgtc gacttctact tcgtcgacac caacggcacg tccgccggcg
      781 ccggacagcg tctcggcgct ccgggaccac aaaacctgac gagcccaaca caacagaacg
      841 ccgcgatgcc cgtccttaat ctcgatcaaa cagtcggcag ctcggctgcg ccgaaccgcg
      901 tgcgcaatct gacctcagat cccgcaaaca attcgacgtt cggcacgatc gacttccgcc
      961 gccgcgtcgt caacacgacc gggttccctg tcacgcggct gcggttccgc atcatcgaca
     1021 tcacaacgtt tcccgcgcct tcgggaattg ccgacctgcg cgtgcgcact tcaaccgacg
     1081 tcaccgtcaa cggcgtcaac gatcccgcga cgtgtcccgg cggcgccaca ccatgctcca
     1141 tcaccgtgct cggaacgact ctcgaacaac caccaacgca actcaacggc ggcgcattca
     1201 attcgtcgtt gtcagccgac acaattacgt tgtccacacc actcgcagcc ggcgaatcga
     1261 tcaaccttca cttcctcttc ggcattcaac agaccggcgc gttcaagttt tatttcaacg
     1321 tcgagctctt aacagatcaa tcagagccac caccgatcga agaactttcc gtgattttgg
     1381 gccatgatcc aaaacgacgt ctatcgactt tttagcagtc ttcaaagttt cagatcatct
     1441 ctttcgcgtc gacgcgtttt catttttgaa gatattgaga gatttggatc agtgtgatcc
     1501 gaatgctcta taactctgcc gtgtctcaac attggatcgg tagttgccat ttccgattac
     1561 ctccccaagt catagttgaa aattaaaaag ccaactccag ggcaagcccg aaatttcgga
     1621 ggtaaacaaa tggcaagatt gaaatacctg agtggttgca ccattctgat tctgctcgta
     1681 ctggcgccca cctcattggc ccagaccagt aagggcttcg tggtcggtac aatcaccgac
     1741 cctaatggcg ccgcagtgcc ggctgccact atcaagatca cgaacacggc taccggcgtc
     1801 gcacgagaaa cgacgacgca ggaagacggt agctatcgtt tcgacgctgt cgatcccgga
     1861 acctaccggc tcgaagtcac tgcgacagga ttcaaaaccg ctactcgtga tgtggtagtc
     1921 gcagcagcac aaacagcgga tgcgacgctt ccgttggaaa taggaaatcc atccgaggtc
     1981 gtaaccgtga cctcgggaac tccggttgaa cttcaaaccc aggacggcgc gcgtgttaac
     2041 acgatcggcg cgcggcagat cactgaaatg ccggttcagg gtttgaaccc cgtcaacc
//
LOCUS       DASWTX010000794         1694 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_362611, whole genome shotgun sequence.
ACCESSION   DASWTX010000794 DASWTX010000000
VERSION     DASWTX010000794.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1694
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362611"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1339
                     /gene="ggt"
                     /locus_tag="VGD38_11960"
     CDS             <1..1339
                     /gene="ggt"
                     /locus_tag="VGD38_11960"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF013206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HEY0728779.1"
                     /translation="IGYRAAGVPGTVRGMELALKKYGSGKLTWSQLVEPARQLAANGF
                     TVTHSLARSLYNSREYLSKYAETKRIYLRNGKFYSEGEIFRQPELAATFSRLQRFGPN
                     EFYTGETARLIVADMKRNNGLMTLDDLDGYVAKERVPVRGKYRGHEIISMPPPSSGGA
                     VLIQMLNILEGFDLSKLEASSSERYHLMAEAMRRAFADRAEYMGDSDFVKVPIAGLID
                     KAYAATLRSTINTDRASSSAEVRAGRPAGYESEDTTHFTVVDADGNAVSNTYTLNNSY
                     GAAAMAKGTGFLLNDEMDDFAAKPGTPNMYGLIQGERNAVAPKKRPLSAMTPTIVLRK
                     DGSLWFTAGSPGGPTIINTVLCIITNVIDYEMNIQEAIDAPRIHHQWLPDELVGEPSG
                     FSSDTQRALTSRGHTLGKLRYLGDAEGIMIEEKTKMRLGATDPRRSDGLAVGY"
     gene            1343..>1694
                     /locus_tag="VGD38_11965"
     CDS             1343..>1694
                     /locus_tag="VGD38_11965"
                     /inference="COORDINATES: protein motif:HMM:NF024581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEY0728780.1"
                     /translation="MAQLAAQEQKLLACIHCGLCLEACPTYVITGNENDGPRGRLYLM
                     RAVAEGRLENTSEAFRTHIDRCLGCRACEQVCPAGVEYGQLLEHSREELSHAQPKNDL
                     TDKALRFALRHLWLS"
BASE COUNT          366 a          490 c          514 g          324 t
ORIGIN      
        1 catcggctat cgcgccgcgg gcgtgcccgg caccgtgcga ggcatggagc tagcgctcaa
       61 aaaatacggc tccggcaaac tgacgtggag ccaacttgtc gaacccgcgc ggcagctcgc
      121 cgccaacggt ttcaccgtga cgcattcgct cgcacgttcg ctctacaaca gccgcgaata
      181 tctctcgaaa tacgccgaaa cgaagcggat ctatttgcgc aacggcaagt tctacagcga
      241 aggcgaaatc tttcgccaac ccgaactcgc cgcgaccttc tcgcgtctgc aacgctttgg
      301 tccaaacgag ttctacacag gcgaaactgc gcggctgatc gtcgcggaca tgaagcgcaa
      361 caacggtctc atgacgttgg acgaccttga cggttacgtc gcgaaagaac gcgtccctgt
      421 gcgcgggaag tatcgcggtc acgagatcat ttcgatgccg cctccgtcgt cgggcggcgc
      481 cgtgctgatc cagatgctca acatcctcga gggtttcgat ctcagcaaac tcgaagcgtc
      541 gtcgtccgag cgttatcacc tgatggctga agcgatgcgc cgcgcgtttg cggatcgcgc
      601 cgagtacatg ggcgacagcg atttcgtgaa agtcccgatc gcggggctaa tagataaagc
      661 gtatgcggcg acgttgagat cgactatcaa caccgaccgc gcgtcgagta gtgctgaagt
      721 gcgtgcgggc cgtccggcgg gttatgaatc cgaagacacg acgcatttca ctgttgtcga
      781 tgctgacggc aacgcggttt cgaacactta cacgctgaac aattcgtacg gcgcagctgc
      841 aatggcgaaa ggcaccggct tcctgctcaa cgacgagatg gacgacttcg ccgccaaacc
      901 cggcacgcca aatatgtatg gcttgattca gggcgagcgc aacgcggtcg cgccgaagaa
      961 gcggccgctg tctgcaatga cgccgacgat cgttttgcgc aaggatggga gtttgtggtt
     1021 tacggccggc agtcccggtg gtccaacgat catcaacacc gtgctgtgca tcatcaccaa
     1081 cgtgatcgac tacgagatga atattcagga ggcgatcgac gcgccgcgaa ttcatcatca
     1141 gtggctgccg gatgaactgg tcggcgagcc gtcgggcttt tcgagcgaca cgcaacgggc
     1201 gttgacctcg cgcgggcaca cgctcggcaa gctgcgctat ctcggcgacg cggaaggaat
     1261 catgatcgaa gaaaaaacga agatgcgcct tggggctacg gacccgcggc gcagcgacgg
     1321 tttggcagtg ggatattgat ttgtggccca actagctgcc caggaacaaa agctgctcgc
     1381 ctgtattcac tgcgggttat gcctcgaggc gtgcccgact tacgtgatta cgggcaacga
     1441 gaatgatgga ccacgcgggc ggctctacct catgcgcgcg gtcgccgaag ggcgtctgga
     1501 aaacacgtcg gaagcgtttc gcacgcacat cgatcgctgt ctcggctgtc gtgcatgtga
     1561 acaggtttgt ccggcgggtg ttgagtacgg ccaactgctc gagcacagcc gtgaagagct
     1621 gtcgcacgcg cagccgaaga acgatctcac cgataaggcg ctacggtttg cattacgtca
     1681 tctatggttg tcac
//
LOCUS       DASWTX010000795         7111 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_421889, whole genome shotgun sequence.
ACCESSION   DASWTX010000795 DASWTX010000000
VERSION     DASWTX010000795.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7111
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421889"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..739)
                     /locus_tag="VGD38_11970"
     CDS             complement(<1..739)
                     /locus_tag="VGD38_11970"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0728781.1"
                     /translation="MRIIRSDIFENLMMALATLRANKLRSFLTVFGVVIGIITVMLIA
                     SIISGIDVSVTREVESFGTRSIYISKYNPGIHIGRMSREERMRKELTYDDAIALQQLP
                     AIELSVPFLDITNNWFGGKLMVSGGGKTSAQVALQGTLPEFEKAGTQVISEGRFFTTT
                     ENDTNQEVCVVGSKVADDFFKLGSPVGQTIKIGPQEFRVVGVLEKREQFLIGGGSDDQ
                     NNVIYVPFSVAQKLKPNADDIYILAVAR"
     gene            complement(739..1977)
                     /locus_tag="VGD38_11975"
     CDS             complement(739..1977)
                     /locus_tag="VGD38_11975"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0728782.1"
                     /translation="MKFIETLKLAVAAIWAHKLRSALTLLGMIVGVTAFVVVVSLIEG
                     FNRYVDEKIAGIGAKSFTIQRFNPLEDFKDTDTIAAAQRRNKELTLDDYDYLRERAQL
                     IGKIGARARVTPSEVKRGDEVLEDIFVSGATANCVDIENRDVLEGRFLAESENESAAR
                     VAYIGYDVADKLFPAGNSVGQEITIRGLPYRVIGVEVAKGTVFGIPQDNFIIIPLKTY
                     AVNYGGLIRQRSLYFVATSITDELFNDAVEESRNLMRVRRKLQSGEKDNFGIVTPDAI
                     TGLRDRLFGTIFIVAIAVPGIALVVGAIVIMNIMLVSVTERTKEIGIRKSLGARQMDI
                     LKQFLVEAVALSTLGGAVGIFLAWVVGMVVTAWIFPTYLSIFAIAGALAASGGAGVAS
                     GIFPAWKAARLDPIEALRAD"
     gene            complement(1984..3225)
                     /locus_tag="VGD38_11980"
     CDS             complement(1984..3225)
                     /locus_tag="VGD38_11980"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0728783.1"
                     /translation="MRFEDIKESSLMAIDTLRSNRLRSALTILGVSVGVVTVIFMVSI
                     IQGLNKAFADQIESLGSNTIFVSKFEPSFGRPPGPDEIHRKDLTMDDAEALRTEAPSI
                     VGVSPIHRLLSSTVRYQDKQTDTPILFGVTPYYEFVHSQYIGSGRFISDLDMQDRSNV
                     VILGVDVKQALFPYEDALDKEVRIEGTPYRVIGVMEPLGNFFGQSRDNSIFIPITTFD
                     KYYPDRPFPEVVFFVIVRPRSRAEVKSAIDEITDILRRRRRVPPGEPNNFGISSQDSL
                     LDVYNQLTGATALVLTSISFVALMIGGIGVMNIMLVSVTERTKEIGVRKAVGATKLNI
                     LSQFLIEAVVLTAIGGIAGLVVGEIASLLMNKYSPLPAYVPLWAIGVGVGISAAVGIV
                     FGLWPAWKAARLNPIDALRWE"
     gene            complement(3222..4454)
                     /locus_tag="VGD38_11985"
     CDS             complement(3222..4454)
                     /locus_tag="VGD38_11985"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0728784.1"
                     /translation="MWEAFRVATGSLRANKLRTALTLMGIVVGVTAVIAVVTIIKGLD
                     QTVAQTFSSQGSTVFTISKNPQIITSREDFIKFNRRKDVTHEDAEAIARLCTSCWRVG
                     IAANAMETVKYQDQKAENVRIRGVDPLTMFDIDGVSLNVGRIWSESEGASGREICVIG
                     PDMLKNLFADAPADQAIGKEIRIDGRPYVVLGVLEPLGSIFGFSRDNVVYIPYSTYQK
                     AYGARRSLVVFIQVPAAEQLEAAEDQVRTIMRNRRGHSLNNPEDEGFSLETQDVFLNL
                     YGSATSNIYIVTIGVAAISLVVGGIVVMNIMLVSVTERTKEIGIRKAIGARRKDILTQ
                     FLIEAVTVTAIGGAIGVGTGFGLAYVISALIGFPLLVSVASAVLGVGVSSVVGIVSGL
                     WPAWRAAKLDPIEALRAE"
     gene            complement(4569..5342)
                     /locus_tag="VGD38_11990"
     CDS             complement(4569..5342)
                     /locus_tag="VGD38_11990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017953234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0728785.1"
                     /translation="MSDATLTLTPTENVIKPQAQPSSEAAGHDPSSLISMRNIWKTYQ
                     MGTEKVHALHGVSFDIPRGEYIAIIGPSGSGKSTLMNLIGCLDTPTQGQYWLNGKNVS
                     EMDDDELARIRNQEVGFVFQTFNLLARATALHNVELPLIYGGVSSSQRHEMAKQALKA
                     VDLAERMTHKPNELSGGQRQRVAIARALVNHPSILLADEPTGALDSHTSMEIMDLFER
                     LHSEGNTIIVVTHEHDIAARAHRVISIRDGQIESDERIK"
     gene            complement(5342..6862)
                     /locus_tag="VGD38_11995"
     CDS             complement(5342..6862)
                     /locus_tag="VGD38_11995"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEY0728786.1"
                     /translation="MAVSRKKKIIIAVVVVAVLASIVIISVIASRKEEPEVVTVKLEV
                     RPELKQTVTASGEIRPIRYIKLTSEVPGRIEEIYVNPGDMVSKGKPLVRIDPTQLQSS
                     QEAQWAATQASINDVQNARNAVSQAQQALVVAEASVESAKQQVIALQTNVERAQVALN
                     AAQRELKRFTELVESGVSSRLEYDRARDDYDNAKIALETAKANLEAQRIAVKEATERA
                     NQQRIAVKEAQTSIKSSEMRASQQQAMLRGQTSQREKATQLSPLNGVIADIPTRVGEY
                     AVSQLSTTPLMTIADMSQINIEVNVDETEINNVQVGQPAKVKVDALGDKEIQAVVVQK
                     NPLAISKSDQTGGLSNRVNVQEAKEFKVTLELREMPEDIQTALRPGMSSTATITTNTK
                     NNVLAVPLESIVEKAPTPTASPAATVASSVPAATAGGEKPKPQKGVYVIEGNKVRFVE
                     VTTGITGEADIEITSGLKATDEIVRGPSRVLKTLKDGMTVARQTKKPGNANGNEGT"
BASE COUNT         1404 a         2088 c         2034 g         1585 t
ORIGIN      
        1 cacgcgcgac cgcgaggatg tagatatcgt cggcatttgg ttttaacttc tgggccaccg
       61 agaagggtac gtagatcacg ttgttctgat cgtcactgcc accgccgata agaaattgtt
      121 cgcgtttctc gagcacaccg acgacgcgaa attcctgcgg gccgatcttg atcgtttgtc
      181 ccaccggcga tccgagcttg aagaaatcgt cggcgacttt cgagcctaca acacagactt
      241 cctggttggt gtcgttttca gttgtcgtaa agaaacggcc ttcggagatt acctgcgtac
      301 cggctttttc gaactccggc agtgtgccct gaagcgcgac ctgcgcagac gttttcccgc
      361 cgccggagac catcaacttc ccgccaaacc agttgttcgt gatgtcgagg aagggaactg
      421 acagttcgat tgccggcaac tgctgcaaag cgatcgcgtc gtcgtaagtc agctctttgc
      481 gcatgcgctc ttcgcgcgac atgcgtccga tgtgaatgcc cggattgtat ttgctgatgt
      541 agatcgagcg cgtgccgaac gactccacct cgcgcgtgac ggacacgtcg atgccgctga
      601 tgatcgaggc aatcaacatc acggtgatga tgccgatgac gacgccgaag acggtcaaaa
      661 acgagcgcag cttattcgcg cgcaacgtgg ccagcgccat catgaggttc tcgaaaatgt
      721 cgcttcgaat aattcgcatt agtctgccct cagtgcctca atcggatcga gccgcgctgc
      781 tttccacgcc ggaaagattc cggaagccac gcccgcgccg cctgacgccg cgagtgctcc
      841 cgcaattgcg aatatcgaca agtaagtcgg aaagatccat gcggtcacaa ccatcccgac
      901 gacccacgcc agaaaaattc ccaccgcgcc gccgagtgtc gacaacgcta ccgcctcgac
      961 cagaaactgt ttcaggatgt ccatctgccg tgcgcccagc gattttctga taccgatctc
     1021 tttcgtgcgt tcggtgacgg acaccagcat gatgttcatg atcacgatcg cgccgacgac
     1081 cagcgcgatt ccgggcacag cgatcgcgac gataaaaatc gttccgaaga gacgatcgcg
     1141 cagacccgtg atcgcatcgg gcgtgacgat gccgaagttg tctttctcac ctgactgaag
     1201 tttccggcgc actcgcatca ggttgcgcga ctcttccacc gcatcgttga acagttcgtc
     1261 agttatcgaa gtcgcgacga aatacagcga acgctgccgg atcaatccgc cgtagttaac
     1321 cgcatacgtc ttcaaaggga tgatgatgaa gttgtcctgc ggaataccga agaccgttcc
     1381 tttcgctact tcaacaccga tgacacgata aggtagaccg cgaatcgtga tctcctggcc
     1441 cacggaattg ccggcgggaa acagcttgtc ggcgacgtcg tagccgatgt atgcgacacg
     1501 cgcggcgctc tcgttttctg actcggcgag aaaacgtcct tcgagaacgt cgcgattttc
     1561 aatatcgacg cagttggccg ttgcgccgga aacaaaaatg tcttcgagca cttcatcacc
     1621 gcgcttcact tccgacggcg tgacgcgggc gcgcgcgccg atcttgccga tgagctgcgc
     1681 gcgttctctg aggtagtcgt aatcatccag cgtgagctct ttgttgcggc gttgcgcggc
     1741 tgcgatggtg tccgtgtctt tgaagtcttc gagtggattg aagcgttgaa tggtgaatga
     1801 cttcgcgccg atgcccgcga tcttttcgtc gacgtagcga ttgaaaccct cgatcagcga
     1861 gacgaccacc acaaacgccg tgacgcccac gatcatgccg agcagcgtca gcgcggagcg
     1921 cagcttgtgc gcccaaatgg cggcgaccgc cagtttaaga gtctcgatga atttcacagt
     1981 taactattcc caacgcaggg cgtcgatcgg gttcaaacga gcggctttcc acgccggcca
     2041 caagccgaag acgattccga ccgccgcgga gatgcccacg ccaactccga tggcccacaa
     2101 aggcacgtat gcaggaagcg gcgagtattt gttcatcaac aggctcgcga tctcgccgac
     2161 caccagtccc gcgatgcccc cgatcgcagt caacacgacg gcttcaatca gaaactgcga
     2221 caggatgttc agcttggtcg ccccgacggc cttgcgtacg ccgatttcct tggtccgctc
     2281 cgtgaccgag accagcatga tattcataac gccgatcccg cctatcatca aagccacaaa
     2341 tgagattgac gttagcacca gtgcggttgc tccggttagc tggttgtaca cgtccagcag
     2401 cgagtcctgc gaggaaatgc cgaagttatt gggctcaccc ggaggaactc ggcggcgccg
     2461 gcgcaggatg tcagtaatct catcaattgc cgacttcacc tccgcgcgcg aacgcggccg
     2521 cacaatcacg aagaacacga cttccggaaa gggacggtca ggataatact tgtcgaacgt
     2581 cgttatggga ataaaaatcg agttatctcg cgactgcccg aagaagtttc ccaagggctc
     2641 catcacgccg atcacgcggt atggagtgcc ctcgatgcgg acttccttgt cgagcgcgtc
     2701 ttcgtaagga aacagcgcct gcttcacgtc gacgccgaga atcacgacgt ttgagcggtc
     2761 ctgcatgtcg aggtcgctga tgaaacggcc gctgccgatg tactggctgt gaacgaactc
     2821 gtaataaggc gtgacgccga agaggatcgg cgtgtcggtc tgtttgtcct ggtaacggac
     2881 cgtggaggac aacagacgat gaattggcga gacgcccacg atcgatggcg cttcggtacg
     2941 tagtgcttcg gcgtcgtcca tcgtcaggtc tttgcgatga atctcgtccg gaccgggtgg
     3001 gcggccgaaa ctcggttcaa acttcgagac aaagatcgtg ttcgatccaa gcgactcgat
     3061 ctggtccgcg aaagctttgt taagtccctg aatgatcgac accatgaaga tgacggtcac
     3121 gacgccgaca ctcacgccga ggatagtcaa cgccgagcgc agtctgttgc tgcgcagcgt
     3181 gtcgatcgcc atcaaactcg attctttgat gtcttcgaat ctcattcagc cctcaacgcc
     3241 tcgatcggat cgagtttcgc cgcgcgccac gcgggccaaa ggccgctgac gattccgacc
     3301 acagacgaca cgccgacacc aagcaccgcg gacgcgacac tcaccagcaa cggaaaacca
     3361 atcaacgccg agatcacgta agcgaggccg aacccggtgc cgacaccgat cgcgccgcca
     3421 atcgccgtca ccgtcaccgc ctcgatcaaa aactgcgtca ggatgtcttt gcggcgcgcg
     3481 ccgatggctt tgcgaatgcc gatctctttc gtgcgttccg tcacggacac aagcatgatg
     3541 ttcatcacca cgatgccgcc caccacgagc gagatcgcgg ccacgccgat cgtcacaatg
     3601 tagatattcg aagtcgccga gccgtagaga ttcagaaaca cgtcctgtgt ttcgagtgaa
     3661 aagccttcgt cctcgggatt gttcagcgag tgaccgcgac ggttgcgcat tatggtgcgc
     3721 acctggtcct cggcggcttc gagttgctct gccgccggca cttgaataaa gaccacgagc
     3781 gagcgccgcg cgccgtaagc tttttgataa gtcgagtagg gaatgtagac cacgttgtca
     3841 cgcgagaagc cgaagatcga ccccaacggt tcgagcacgc ccaacacgac atacggccgc
     3901 ccatcgatgc ggatctcttt tccgatcgcc tgatccgcgg gcgcgtccgc aaacaggttc
     3961 ttcagcatgt cgggaccgat gacgcagatc tcgcggcccg acgccccttc gctttcactc
     4021 cagatgcggc cgacgttcag gctcacaccg tcgatatcaa acatcgtcag cggatcgacg
     4081 ccgcgaatgc gcacgttttc cgctttctga tcctggtact tcaccgtctc catcgcgttc
     4141 gcggcgatgc cgacgcgcca gcacgacgta cacaaacgcg cgatcgcttc cgcgtcttcg
     4201 tgcgtcacgt ctttgcggcg gttgaacttg atgaagtcct cgcgcgatgt gatgatttgc
     4261 gggttcttgg aaatcgtgaa aacggtcgag ccttgcgacg agaatgtctg ggccaccgtt
     4321 tggtccagac ctttgatgat cgtgacgacg gcgatcacgg ccgtgacgcc gacgacgatg
     4381 cccatcagcg tcaacgccgt gcgcagcttg tttgcacgca ggcttccggt ggcgacgcga
     4441 aacgcctccc acactgcggt gagccggaaa attggaaacg atttgatccg tgccggaagg
     4501 acagcgcgag cgaatgtgta gcgctgtggc cttgagtcgt gctcgccact tcgctccatc
     4561 tcactctcct acttgatgcg ttcgtctgat tcgatctggc cgtcgcgaat cgagatcaca
     4621 cggtgggcac gagcggcgat gtcgtgctcg tgcgtgacga cgatgatcgt gttgccttcg
     4681 gagtgcagac gttcgaagag atccatgatc tccatgctgg tgtgggagtc cagcgctccg
     4741 gttggttcgt cagccagcag aattgacggg tggttgacga gcgcgcgggc gatcgcgacg
     4801 cgttggcgtt gtccgcccga gagctcgttg ggtttatgcg tcatgcgctc ggcaagatcg
     4861 acggccttca gcgcctgctt ggccatctcg tgccgttgcg acgagctgac accgccgtag
     4921 atcaacggca gttcgacgtt gtgcaaagcg gtcgcgcgcg ccagcaggtt gaacgtttga
     4981 aatacgaagc cgacttcctg gttacgaatg cgcgccagtt cgtcgtcgtc catttcggaa
     5041 acgttcttgc cgttgagcca gtactggccc tgtgtcggcg tgtcgagaca gccgatcagg
     5101 ttcatcagcg tcgacttgcc ggagccggat ggtccaatga tggcgatgta ctcgccgcgc
     5161 ggaatgtcaa acgaaacacc gtgcagcgcg tggaccttct ccgtgcccat ctggtaggtc
     5221 ttccagatgt tgcgcatcga gatcagcgaa gacggatcgt ggccggcagc ctcggacgaa
     5281 ggctgagcct gcggcttgat cacgttttct gtcggtgtaa gcgtgagagt cgcgtcgctc
     5341 attaggtgcc ctcgtttccg ttggcattgc cgggtttctt ggtttgccgc gcgacggtca
     5401 tgccgtcctt gagcgtcttc agtacgcggc tgggaccacg cacgatctca tcggtggctt
     5461 tcaaaccgct cgtgatctcg atgtcggctt cgcccgtgat gccagttgtc acttcgacga
     5521 agcgcacctt gttgccttcg atcacgtaaa cgcccttttg tggcttcggt ttctcgccgc
     5581 ccgctgtcgc tgcgggaacg ctgctcgcga cggttgcggc cggagatgca gtcggtgtgg
     5641 gtgctttttc gacgatcgac tcgagcggca cggccagcac gttgttcttt gtgttggttg
     5701 tgatggtggc ggttgagctc atgccgggac gcagcgcggt ctgaatgtct tccggcatct
     5761 cgcgcagttc gagcgtgact ttgaactctt tcgcttcctg aacgttgaca cggttcgaca
     5821 agccgcccgt ctggtcagac ttggaaattg ccagcgggtt tttctgaacc actacggctt
     5881 ggatttcttt gtcgccgagt gcgtcgactt tgactttcgc cggttggccc acctgaacgt
     5941 tgttgatttc cgtttcgtcg acgttgacct cgatgttgat ctgcgacatg tcggcgatgg
     6001 tcatcaacgg cgtggttgaa agttgcgaca ccgcgtattc gccgacgcgc gtcggaatgt
     6061 cggcgatgac gccgttcaac ggagatagct gagtcgcctt ttcgcgctgg ctcgtctgac
     6121 cgcgcaacat cgcctgctgt tggctggcgc gcatctctga cgacttgatg ctcgtctgcg
     6181 cttctttcac ggcgatgcgc tgttggttgg cgcgttcggt ggcttccttg acggcgattc
     6241 gctgggcttc aaggtttgct ttcgctgttt cgagcgcgat cttggcgttg tcgtaatcgt
     6301 cacgcgcgcg atcgtattcg agccgcgacg agactccgga ttcaaccagt tccgtgaaac
     6361 gcttgagctc gcgttgggcg gcgttcaggg ccacctgggc ccgctcgacg ttggtctgaa
     6421 gcgcgatgac ttgttgtttg gctgactcca ctgaagcttc agcgacgacg agcgcctgtt
     6481 gcgcctggct cacggcgttg cgcgcgttct gcacgtcgtt gatcgacgcc tgtgtggcgg
     6541 cccattgggc ttcctggctc gactgtagct gtgtcggatc gatgcggacc agcggcttgc
     6601 ccttgctgac catatcaccc gggttgacgt agatttcttc gatacgcccc gggacttcgc
     6661 tagtgagttt gatgtagcgg ataggacgaa tttcgccgga cgcggtaact gtctgtttga
     6721 gttccggtct gacttcgagc ttgaccgtca cgacttcagg ctcttccttg cggctggcga
     6781 tcacgctgat gatcacgatc gaggcgagca cggccacgac gaccacggcg ataataatct
     6841 tcttttttcg actcactgcc attctttggg ttcctcaggt ttccgacggg gctattatca
     6901 cgaagtagct agtacgggaa aacttatcaa actgtttcat ttcagagcaa acgggcaaac
     6961 gcatttggaa gcacaaaaac gacaaatggt ttgcgacgca tcttcgacgc tcaacacatc
     7021 ttcgacgctc aaaacgccaa atggtcccct tccttcgacg ctcaaaacgc cgaaggcgtt
     7081 aacaagtttc agcccatctt caaagtttca t
//
LOCUS       DASWTX010000796         7539 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_316548, whole genome shotgun sequence.
ACCESSION   DASWTX010000796 DASWTX010000000
VERSION     DASWTX010000796.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7539
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316548"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1271
                     /locus_tag="VGD38_12000"
     CDS             <1..1271
                     /locus_tag="VGD38_12000"
                     /inference="COORDINATES: protein motif:HMM:NF015530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728787.1"
                     /translation="YPEDMTKEEFNAWVETLSDADKQKATGFFYLIRRGADRKLTLVP
                     YSQAYKEYLEPAARLLREAAALTTNATLKKFLTTRAAAFGSDDYYESDVAWMDLDSPI
                     DVTIGPYETYEDELFSYKAAFEAYITIRDDVETAKLAKFSGHLQELENNLPIDPKYRN
                     PKLGAASPIRVVNEVFGSGEGNSGVQTAAFNLPNDERVVKEKGSKRVMLKNVQDAKFN
                     KTLVPISRVVLDPSEQSALSFDSFFTHILCHELMHGLGPHNITVGGQETTVRKQLKEL
                     YSAIEEAKADMTGLWALQYMIDRGIIEKSMERTLYTTYLASMFRSVRFGITEAHGRGV
                     ALQFNYLTDEGAIKFNEAKGTFSIDHAKIKDSVRKLTRELLTLEAEGSYDGAKALLDK
                     YALIRPPMQQALDRLKDVPVDIEPNFPLAK"
     gene            complement(1272..2303)
                     /locus_tag="VGD38_12005"
     CDS             complement(1272..2303)
                     /locus_tag="VGD38_12005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728788.1"
                     /translation="MPLWQNYIYRRERAYHQRDNNRVVRPFEWGLPFVLDHVNGDDPR
                     HVMAQHAARVMQDSDQFYALPEITDYRLEGDRLTWTSAVETPSIENNTARARYFPVQP
                     KNGKRSRKAVVVLPQWNAQPESHVEACRIFNMIGMAALRLTLPYHLERKPAELERADH
                     LVCSNIGRTIQSTRQAVLDTRAAVRWLRNEGFEQIGILGTSVGSCIAFLAFAHEPDLK
                     AGAFNHVSGYFADVVWHGLSTSHVRAGFADHLTLDELRTYWSPISPFPFMPRLKNMGH
                     RPMRFIVAQYDLTFPLDLSLEAIAEARRHELPLDVVWLPCGHYTTGELPWKAIDAWKI
                     ATFFRKQFR"
     gene            complement(2413..3960)
                     /locus_tag="VGD38_12010"
     CDS             complement(2413..3960)
                     /locus_tag="VGD38_12010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728789.1"
                     /translation="MAEQRRAEVSNAIHFDKTPKPLREMFETGEKQKPARGGKDFEPG
                     RPQPVGNTNREFTDPLAAQGSGLSSALAEPKASTIGTPIDPLLRVAPPDTTGDVGPNH
                     YVQWVNLRYSIYTLSRDAGNNITAFNLVPGFPKQGNVVWQGFGGRCQSDNDGDPIVQY
                     DQLADRWVLTQFAVSATPYTQCVAVSTSPDPTGTYFRYAFSYNRSFNDYPKMGVWPDA
                     YYITYNMFRNGASFTGNTVCAFERDRMLLGLSARQICANTTAGHSLEPSDLEGTTLPP
                     AGTPNLLMSITTATTTVQFWRFAVNWTAGTGTLTGPTLIPVATFARACGGGACIPQPG
                     TSQRLDSLADRLMYRLSYRNIAGSERLVINHSVTSGTGVGIRWYELTNATGQTMASAT
                     PVIRQQGTFAPTSDFRWMGSAAIDKTGGIAVGYNISNASAIVPSIRYAYRGPADPLGT
                     MGNETNALTGLGIQTASLSRWGDYSTISVDPVDGCTMVFTTQYQPVNGNFNWTTFIHS
                     FKLSTCN"
     gene            complement(4262..5848)
                     /locus_tag="VGD38_12015"
     CDS             complement(4262..5848)
                     /locus_tag="VGD38_12015"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY0728790.1"
                     /translation="MSTQSLSSTQTRAEVREIVSVNPATGRENGRVPLMNAGDVAAAV
                     KRARQAQEAWSRLSYRARAQFVLRAREIVLAQVDEIAALVSRETGKPPAEATSMEIVP
                     TLDLMHYFARNTERILMRQKIDIGQYGLMGRSSYIVYKPLGVVGIISPWNFPWATPLD
                     EVVMALMAGNAVVLKPSELTPLTALKIGEVFREARLPEGLLEIVTGDGSTGAALVDAG
                     VDKIMFTGSVATGKRVAEMAARHLTPVVLELGGKDPMIVLEDANLANAARAAVWGGFC
                     NAGQACASIERLYVHESIAKEFTDLVVNETRKLRLGPPASDAVDLGAMTNERQLHIVE
                     KHVQDAVERGARIETGGHRVENTDGWFHEPTVVTNVDHSMEIMRDETFGPVLPIMTFK
                     TDDEALRLANDSVYGLTASVFTSDISRGRRLAEQIDAGTVMINEVVYTHAIAQTPWGG
                     VKQSGYGRTHGRLGMLELVTHQHIHVNSIAWLPDVWWFRYTTSAANLFRGFARHFTTG
                     SPLSSSLLLPKIIRRLFEKS"
     gene            5898..7190
                     /gene="pepP"
                     /locus_tag="VGD38_12020"
     CDS             5898..7190
                     /gene="pepP"
                     /locus_tag="VGD38_12020"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: protein motif:HMM:NF008131.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HEY0728791.1"
                     /translation="MIRSQLAEFKRRMQPKSVAIIPAARETTRSNDTHYRFRQDSDFF
                     YLTGFEEPEAIAVIKPGETHEYVLFVRPRDPEREIWDGRRAGVEGAKSEFGAEAALPI
                     DEFDSKLTEILNNAEILYYRLGAQRDLDDKIIREISRMRALNRKPIHPPQTIVDPATI
                     IHEQRIIKSPEEIEIMQTAADIAAEAHCEAMKAVRPGMQEFEVEALIEQIFRRRGAAG
                     PAYTSIVGAGPNATVLHYINNDGELRDGELLLVDAGAEYKGYASDITRTFPINGRYSQ
                     AQREIYDLVLKAQMSCVEMVRPGVTHDQLKQHSIEVLTEGMVDLGLLEGDPEQLIKDK
                     KYEKFYMHGLGHMLGIDVHDVGRYYYGDESRALEPGVVMTVEPGIYIAPDMIGVPEKY
                     LGIGVRIEDDVLCTNNGPRVLTSKVPKQAEEIEALMAK"
     gene            complement(7191..>7539)
                     /locus_tag="VGD38_12025"
     CDS             complement(7191..>7539)
                     /locus_tag="VGD38_12025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728792.1"
                     /translation="PAGILSAFYPSTGHFIGVVGRVSDGLLARRVKSAMSEAAPLPVY
                     SVSAPSVIPGVDFSDQLNYWHAGYKAVMITDTAFYRNVNYHTQDDTPEKLDYKRMAMV
                     VEGVYAAVTDLSR"
BASE COUNT         1638 a         2192 c         2237 g         1472 t
ORIGIN      
        1 attacccgga agacatgacg aaagaagagt tcaacgcgtg ggtggaaact ctttccgacg
       61 ccgacaaaca gaaggccacg ggcttcttct atctcatccg gcgcggcgcg gacaggaaat
      121 tgacactcgt tccttacagt caggcgtaca aagagtatct cgaacccgct gcgcgcctgc
      181 tccgtgaagc cgccgcgctt accaccaacg cgacgctgaa aaagtttcta actacacgcg
      241 cggctgcttt cggttctgac gactattacg aaagcgacgt cgcgtggatg gacctcgatt
      301 cgccaatcga cgtcacgatc gggccatacg aaacttacga agacgagttg ttcagttaca
      361 aagcagcgtt tgaagcgtac atcacgattc gcgacgacgt ggagacagcg aagctcgcga
      421 agtttagcgg ccacctgcag gagctcgaaa acaacctgcc gatcgatccg aagtatcgca
      481 atccaaagct cggcgcggcc tcgccgattc gcgtggttaa cgaagtgttc ggttcgggcg
      541 aaggcaacag cggcgtgcaa accgcggcgt tcaatctgcc gaacgacgag cgcgtcgtga
      601 aagagaaggg ctcgaagcgc gtcatgctga agaacgtgca ggacgcgaag ttcaacaaga
      661 cgctggttcc gatctcgcgc gttgtgctcg atccgagcga acagtcggcg ctttcgttcg
      721 actcgttttt cacgcacatc ctctgtcacg agctgatgca cggcctcgga ccgcacaaca
      781 tcacggtcgg cggtcaggaa acgaccgtgc gcaagcagtt gaaggagctg tactcggcga
      841 tcgaagaagc gaaggccgac atgacgggac tgtgggcgct gcagtacatg atcgatcgcg
      901 gcatcatcga gaagagcatg gagcggacgc tttacacgac gtacctggcg agcatgtttc
      961 gttcggtgcg gtttggtatc actgaagcgc acggccgtgg tgtggcgttg cagttcaact
     1021 acctgaccga cgagggcgcg atcaagttca acgaagcgaa gggaacgttc agcatcgatc
     1081 acgcgaagat caaagacagc gtgcgcaagc tcacgcgcga acttttgaca ctcgaagcgg
     1141 aaggctcgta cgacggcgcc aaagcgttgc tcgacaagta cgcgctgatc agaccgccga
     1201 tgcagcaggc gctcgaccgg ctgaaggacg tgccggtgga catcgaaccg aactttccgt
     1261 tggcaaaata atcagcggaa ttgtttgcgg aagaaggtgg cgatcttcca ggcgtcgatg
     1321 gctttccacg gcagttcgcc ggtggtgtag tggccgcacg gcagccagac gacgtcgagc
     1381 ggtaactcgt gtcgacgcgc ttcggcaatc gcctcgagcg agaggtcgag aggaaacgtt
     1441 agatcgtatt gcgccacgat gaaacgcatc ggcctgtggc ccatgttttt caaacgcggc
     1501 atgaacggga acgggctgat cggcgaccag taagtgcgca gctcgtcgag cgtcaggtga
     1561 tccgcaaacc cggcgcgcac gtgactcgtc gagagcccgt gccagacaac gtccgcgaaa
     1621 taacccgaga cgtgattgaa cgcgccggct ttcagatccg gctcgtgcgc gaaagcgaga
     1681 aacgcgatgc acgaaccgac gctcgtgccc aaaatcccaa tctgttcgaa tccctcattt
     1741 ctcaaccagc gcaccgccgc gcgtgtgtcc aacaccgcct gacgagtcga ttgaatcgtg
     1801 cgcccgatgt ttgagcaaac gagatgatcg gcgcgttcga gttccgcggg tttgcgttcg
     1861 aggtgatacg gaagcgtgag ccgcaacgcc gccatgccga tcatgttgaa gatgcggcaa
     1921 gcttcgacgt gactttccgg ttgcgcgttc cactgcggca gcaccaccac agctttgcgc
     1981 gaccgcttgc cgttttttgg ctggacaggg aagtatcgcg cccgggcggt gttgttctcg
     2041 atcgacggcg tttccacggc gctcgtccag gtcaagcgat cgccttcgag ccggtaatct
     2101 gtgatctccg gcagcgcgta aaactggtcg ctgtcctgca ttacacgcgc ggcgtgttgc
     2161 gccatgacgt gacgcggatc gtcgccgttg acgtggtcga gcacgaacgg cagaccccac
     2221 tcaaacgggc gcacgacgcg gttgttgtca cgttggtgat acgcgcgttc gcgccggtag
     2281 atgtagtttt gccacagcgg cataagtcgc cgatactaag acaaaacaag cgcgaatgta
     2341 aaaagggctg tgtcgaaaaa gaaagggctg tcccggagga cagccctcgt ctaaacgtgc
     2401 aggcaccgcg ccttagttac acgtcgaaag tttgaacgag tggataaacg tcgtccagtt
     2461 gaagtttccg ttgaccggtt gatactgcgt cgtgaatacc atcgtgcagc cgtcaaccgg
     2521 atcgacgctg atagtgctgt agtcgcccca gcgcgacaag gatgcggtct ggattccgag
     2581 tccggttaag gcgttcgtct cgttacccat ggttccgagc ggatcggccg gcccgcggta
     2641 ggcataccgg atactcggca cgatagccga ggcgttcgag atgttgtaac ccacggcaat
     2701 gccgccggtt ttatcgatcg ccgcactgcc catccagcga aagtcgctcg tcggcgcgaa
     2761 cgtgccttgc tggcgaatga cgggcgtagc gctcgccatc gtttggcctg ttgcgttcgt
     2821 cagttcatac caacgaatgc cgacgcccgt gccgctggtg acggagtggt tgatcaccaa
     2881 cctttcgctg ccggcgatgt ttcgataact caaccggtac atcagtcgat cggccaacga
     2941 gtcgagacgc tgcgacgttc ctggctgtgg aatacaagcg ccgccgccac aggcgcgtgc
     3001 gaatgtagcc acagggatga gcgttggccc ggtaagcgtg cccgttccgg cagtccaatt
     3061 aacggcaaac cgccagaatt gaaccgtcgt agtggccgtg gttatgctca tgagcaggtt
     3121 tggtgtgcct gccggtggaa gtgtcgtgcc ctcgaggtcc gacggttcga gactgtgtcc
     3181 cgcggtcgtg ttggcgcaaa tctgccgcgc gctgaggcca agcagcatcc ggtcacgttc
     3241 gaaagcgcaa acggtattgc cggtgaatga tgctccgtta cggaacatgt tgtaagtgat
     3301 gtaataggca tccggccaaa cgcccatctt cgggtagtcg ttaaagcttc tgttatagga
     3361 gaaggcgtaa cggaagtaag tacccgttgg gtcggggctg gtagaaacgg cgacgcactg
     3421 agtgtatgga gttgcggaaa ctgcgaactg cgtcaacacc cagcgatcgg cgagttgatc
     3481 gtattggacg atcgggtcgc cgtcgttgtc ggactggcaa cgtccgccga agccctgcca
     3541 aaccacgttg ccctgtttcg gaaaaccggg aacgagattg aaggcggtaa tgttattgcc
     3601 ggcgtctctg cttaacgtgt agatcgagta acgcaggttt acccactgca cgtagtgatt
     3661 ggggccaacg tcgccggttg tgtccggtgg agcaacccgc aacaatggat cgatgggggt
     3721 gccgatggtt gacgccttgg gctcggcaag cgccgatgac aagccggagc cttgggctgc
     3781 gagcggatcg gtgaactcac gattggtgtt tccaactggt tgcggccgtc ccggttcaaa
     3841 atccttaccg ccgcgcgctg gtttttgctt ttcgccggtc tcaaacattt cgcgcagcgg
     3901 ctttggagtc ttgtcgaaat gaattgcgtt actgacctcg gcgcgacgtt gttctgccac
     3961 ctcactttgc ccatgggcca ccaggggcag acaggaaacc gcacacaaaa ctacgatcat
     4021 tgctacagcg tgaagcttct tcattctatt cctccaactc agggctagtg tgagttactt
     4081 aaggcgatag tatttgggag ccgggagtgg actacagcct catccgcaaa taagttttat
     4141 tgagaaaccc ttcccagaga gagggtataa gctgggatgg cgacgcagta tagcatcgcc
     4201 gttgcggaat tacgagggcg ctagtagcgg aaaacactgg caaacggacg ggcagcgaag
     4261 cctagctttt ctcaaacagg cggcggatta ttttggggag gaggagggac gaactgaggg
     4321 gtgagccggt ggtgaaatgg cgggcgaagc cgcgaaagag gttcgcggcg ctcgtggtgt
     4381 agcgaaacca ccagacgtcc ggtagccacg cgatgctgtt cacgtgaatg tgttgatgcg
     4441 tgaccagctc cagcattccg aggcgcccgt gagttcggcc gtagccgctt tgcttaacac
     4501 cgccccacgg cgtttgcgcg atcgcgtgcg tgtagacgac ttcattgatc atcacggttc
     4561 cggcgtcgat ctgttccgcg agacggcgcc cgcgagagat gtcgctggtg aagacggagg
     4621 cagttaatcc gtagacactg tcgttcgcca gccgcaacgc ttcgtcatct gtcttgaagg
     4681 tcatgatagg caacactggt ccaaacgtct cgtcacgcat gatctccatc gagtggtcca
     4741 cattcgtgac aaccgttggt tcgtgaaacc atccgtcagt gttctcgaca cgatgccctc
     4801 cagtttcgat ccttgcgccg cgctcaaccg cgtcctggac gtgcttctcg acgatgtgta
     4861 actgccgctc gttcgtcatc gcgccgagat cgaccgcatc cgacgcaggt ggaccaagcc
     4921 tgagcttgcg cgtctcgtta acaacgagat ccgtgaactc cttcgcgatc gactcgtgaa
     4981 cgtaaagccg ctcgatcgac gcgcacgcct gtcccgcgtt gcagaacccg ccccacaccg
     5041 ccgcacgcgc cgcgttcgcg aggttcgcat cttcaagcac gatcatcgga tctttgccgc
     5101 cgagctcgag cacgaccggc gtcaaatgcc gcgcggccat ttccgcgaca cgtttccccg
     5161 tcgcaacact gcccgtgaac atgatcttgt cgacaccggc atctaccagc gccgcgccgg
     5221 tcgatccgtc gccggtaacg atctccagca acccttccgg cagtcgtgct tcccggaaaa
     5281 cttctccaat cttcaacgca gtgagcggcg tgagctcact cggtttcagc acgacagcat
     5341 tgccggccat caacgccatc acgacctcgt caagcggcgt cgcccacgga aaattccacg
     5401 gcgaaatgat gccaacaacg ccgagcggtt tgtaaacgat gtacgacgac cggcccatca
     5461 acccatactg tccgatgtcg atcttttgcc gcatcaagat gcgctcggtg ttgcgcgcaa
     5521 agtagtgcat gagatcgagc gtcggcacga tctccatcga cgttgcttcc gccggaggct
     5581 tccctgtctc acgagaaacc aaagccgcga tttcgtcgac ctgagcgagc acgatctcac
     5641 gcgctcgcaa aacaaactgc gcccgcgcgc gatacgacag ccgcgaccac gcctcttgcg
     5701 cctggcgcgc gcgcttcacc gccgctgcga catcgccggc gttcatcaac ggcacgcgtc
     5761 cattctctcg tcccgtcgcc gggttaaccg aaacgatctc gcgcacctcg gcgcgcgttt
     5821 gcgtcgatga aagactttgc gtgctcatcg ggtacaatgt aggtccaaat tatcccagct
     5881 acaagaggaa gaccctgatg atcagatcgc aactggcgga gtttaagcgt cgaatgcagc
     5941 caaagtccgt cgccatcatc ccggccgcgc gcgaaacgac gcgctccaac gacacgcact
     6001 accgctttcg ccaggactcc gacttctttt atttgactgg tttcgaagag cccgaagcga
     6061 tcgccgtaat aaagcccggc gagacgcacg agtacgtttt gtttgtacgc ccgcgcgatc
     6121 ccgagcgaga gatttgggac ggccgccgcg cgggtgtcga aggcgcgaag agtgagtttg
     6181 gcgccgaagc agcgctgccg atcgacgagt ttgactcaaa actcaccgag attctgaaca
     6241 acgcggaaat cctttattac cgcctcggtg ctcagcgcga tctcgacgac aagatcattc
     6301 gcgaaatctc gcgtatgcgc gcgttgaacc gcaaaccgat tcacccgccg cagaccatcg
     6361 tcgatcccgc gacgatcatc cacgaacaac gcatcatcaa gagccccgaa gagatcgaga
     6421 tcatgcaaac ggccgcggac atcgccgccg aagctcattg cgaagcgatg aaagcggtgc
     6481 gcccgggcat gcaggagttt gaagtcgaag cgctgatcga acagatcttt cgccgccgtg
     6541 gcgccgccgg acccgcttac acgtcgatcg tcggcgctgg tccaaacgcg accgtgctgc
     6601 actacatcaa caacgacggc gaactgcgcg atggcgagtt gttgctggtg gacgcaggcg
     6661 ccgaatacaa gggctacgcg tccgacatca cgcgcacgtt tccgatcaac ggccgctact
     6721 cgcaagcgca acgcgagatt tacgacctcg tgctgaaggc gcagatgtcg tgcgtcgaga
     6781 tggtgcggcc cggcgtcacg cacgatcaac tgaagcagca ttcgatcgaa gtgttgacgg
     6841 aaggaatggt tgatctgggc ctgctggaag gcgatccgga acagctaatc aaggacaaga
     6901 agtacgagaa gttttacatg cacggcctcg gtcacatgct tggcatcgac gtgcacgacg
     6961 tcggccgtta ttactacggc gatgaatcgc gcgcgctcga accgggcgtc gtgatgacgg
     7021 tcgaaccggg aatctacatc gcgccggaca tgatcggcgt gccggagaag tatctcggca
     7081 tcggcgtgcg catcgaggac gacgtgctct gcacgaacaa tggtccaaga gtgttgacga
     7141 gcaaggtgcc caaacaggcg gaagagatcg aagccttgat ggcgaagtag ctaccgcgac
     7201 aaatcggtaa cggccgcgta aacgccttcg acgaccattg ccatgcgttt gtaatcgagc
     7261 ttctcgggcg tgtcgtcctg cgtgtggtag ttaacgttgc gatagaaggc ggtgtcagtg
     7321 atcatcaccg ccttgtaacc cgcgtgccag tagttcaact ggtccgagaa atccacaccc
     7381 ggaatcacac tcggcgcgct gactgaatag accggcaacg gcgcggcctc actcatcgca
     7441 ctcttcacac gccgcgcaag caaaccatcg ctgacacgcc cgacaacgcc gatgaagtgt
     7501 ccggtcgaag gatagaacgc cgacagtatt cccgcggga
//
LOCUS       DASWTX010000797         2967 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_340499, whole genome shotgun sequence.
ACCESSION   DASWTX010000797 DASWTX010000000
VERSION     DASWTX010000797.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2967)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2967)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2967
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_340499"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            176..1363
                     /locus_tag="VGD38_12030"
     CDS             176..1363
                     /locus_tag="VGD38_12030"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016293398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HEY0728793.1"
                     /translation="MPELNEAVIISAARTPVGKFLGALKGFTAPQLGAIVVREAVKRA
                     GVKPEDVDEVIMGCVIQAGLGQNPARQAALKGGLPNTVSAVTVNKVCGSGLKAVMMAA
                     QGVQLGDTDIVVAGGMESMSNAPYLIPKAREGYRLGNGELVDSMINDGLWCAFENYHM
                     GCTGEVVADEYKIGRAEQDEFATNSHRKAVAAIKAGKFKDEIVAVEIPQRKGAALVFD
                     TDETVREDTSVEGLAKLKAAFTPEGTVTAGNAPGVNDGASALVVTSMRRARELGVEPM
                     GRIVGQATAGVEPRLVMMAPVEAVRKLFKKTGWSASEVDLFELNEAFSVAAVAVTREL
                     GLDPEKVNVNGGAVALGHAIGQSGSRLLTTVLHELKRRDAHRAVVALCLGGGNAVALA
                     VER"
     gene            1379..2224
                     /locus_tag="VGD38_12035"
     CDS             1379..2224
                     /locus_tag="VGD38_12035"
                     /EC_number="1.1.1.157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016293396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyryl-CoA dehydrogenase"
                     /protein_id="HEY0728794.1"
                     /translation="MSEVIGVVGAGTMGNGIAQVAARAGYNVILQDVRDEFIERGLAA
                     IGKSLQRDVDKERISAEEKQRIVGRIRTTTDFSLFSEAAFVVEAVTENLAIKTEVFKA
                     LDRITPPDAILASNTSSISITKLAAATNRPEKVIGMHFMNPVPVMKLVEVIRGMATSD
                     ETYERVRQLSEKLDKIALDCQDSPGFVSNRVLMPMINEAIFTLYEGVATRESIDGIMK
                     LGMNHPMGPLTLADFIGLDVCLAIMNVLYEGLGDPKYRPCPLLKRYVDAGWLGRKSGR
                     GFYEY"
     gene            2330..>2967
                     /locus_tag="VGD38_12040"
     CDS             2330..>2967
                     /locus_tag="VGD38_12040"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728795.1"
                     /translation="MIVVEPTSSRFEAGSATVSTDEHLLERISAAENRTARLAERLER
                     SLDLLLRYAQNAYFDRSLTRALISLLEEDGVVQSERLERLWSERCERDALEQEESVHR
                     DELRLRILAHAHAMDRPVFEELVNEGFLLIEDKQVQEGITKLQRAAEMEDENAALNLY
                     LGEHYFRRGKSKRARTYLMRAHEALPDDVRVSLLLGLACADDGEVEQAKDLLR"
BASE COUNT          648 a          694 c         1012 g          613 t
ORIGIN      
        1 gatctggtag agcagaaacg ggcgattgca gatgggaacg atcggttttg gtgtgtaaac
       61 cgttaatggg cgaaggcgcg tacctttacc cccggccaga atcagtgctt gcatgcttta
      121 tgaatagcga aagaaagtct aatatcggag caagtctaac ataagggagt ttgaaatgcc
      181 ggaactgaac gaagcggtaa ttatcagcgc ggcgcgcacg ccggtgggga aatttctcgg
      241 tgcgctgaaa gggtttacag cgccgcaatt gggcgcgatc gtggtgcgcg aagcggtaaa
      301 acgtgcgggt gtgaagcctg aagatgttga cgaagtgatt atgggctgcg tgatccaggc
      361 gggcctgggc cagaaccccg cgcggcaagc tgctttgaaa ggcggattgc cgaatacggt
      421 ttccgcggtg accgtgaaca aggtgtgtgg ctcgggtttg aaagccgtga tgatggcggc
      481 gcagggcgta caacttggcg acaccgacat cgtggttgcg ggcgggatgg agtcgatgag
      541 caacgcgccg tacctgattc cgaaagcgcg cgaaggttac cgtttgggaa atggcgaact
      601 ggttgattca atgatcaacg acggcctatg gtgcgcgttt gagaattacc acatgggctg
      661 cacgggtgaa gtcgttgccg atgagtacaa gatcggccgc gccgagcagg acgagtttgc
      721 gacaaactcg caccgcaaag cggtggccgc gatcaaagcg ggcaagttta aagacgagat
      781 cgtggcggtg gagatcccgc agaggaaggg cgccgcactt gttttcgata ctgacgagac
      841 tgttcgtgaa gatacgtcgg ttgaagggct ggcgaagctg aaggcggcct tcacgccgga
      901 aggaacagtg acggcgggta atgcgcccgg tgtgaacgac ggcgcgtcgg cgttggtggt
      961 gacttcaatg cgtcgcgcgc gtgagcttgg cgttgagccg atgggccgga tcgtgggcca
     1021 ggcgacggcg ggtgttgagc cgcggttggt gatgatggcg ccggttgagg ccgtgcggaa
     1081 gttgttcaag aagacgggct ggtccgcgag tgaagtcgat ctgtttgagt tgaacgaggc
     1141 gttttcggtg gcggcggttg ctgttacgcg cgaactcgga ctcgatccgg aaaaggtgaa
     1201 tgttaacggc ggcgcggtgg cgttgggcca tgcgatcgga caatccggat cgcgtttgtt
     1261 gacgacggtt ctgcacgagt tgaagcggcg cgatgcgcat cgtgcggtcg tggcgctgtg
     1321 tctcggtggt ggaaatgcgg tagcgcttgc tgttgaaaga taaggagaag agaaacgagt
     1381 gagtgaagtg attggtgtag tcggcgcggg cacgatgggc aatggaattg cgcaagttgc
     1441 ggctcgcgcc gggtataacg tgatcctcca ggatgtgcgg gacgagttta ttgagcgtgg
     1501 tttagctgca atcggaaaaa gccttcagcg tgacgtcgac aaggaaagga tttcggccga
     1561 agaaaaacag aggattgtgg gaaggattcg cacgacgact gacttctcgc tgttcagtga
     1621 agccgcgttc gtcgtcgaag cggtaactga aaacctcgcg atcaagaccg aggtcttcaa
     1681 agcgctcgat cggatcacgc cgccggatgc gattctcgct tcgaacacgt cgtcgatctc
     1741 gatcacgaaa ctcgccgcag caaccaaccg gccggaaaaa gtcatcggta tgcactttat
     1801 gaatccggtg ccggtgatga agctcgtcga agtaattcgc ggcatggcga cgtcggacga
     1861 gacttacgaa cgcgtccgac aactctcaga gaagttggac aaaatcgcgc tcgactgtca
     1921 ggattcgccc ggatttgtgt caaaccgcgt gttgatgccc atgatcaacg aggcgatttt
     1981 tactctgtac gagggcgtag cgacgcgcga aagcatcgac gggataatga aactcggaat
     2041 gaaccaccca atgggaccgc tgactttggc ggattttatc ggtctcgacg tgtgcctcgc
     2101 catcatgaat gtgttatacg aggggctcgg agatccgaaa tacaggccgt gcccgctgct
     2161 caagcgttac gtcgacgctg ggtggttagg aagaaagagc ggccgcggtt tttacgagta
     2221 ttaaagcagc acactaaaga tggcccctaa catctctcac tattgtcaaa aatgcctggc
     2281 tccgaatccg ctgggacagg agttctgttc tcgttgtggg acgcgactga tgatcgtggt
     2341 cgagcccact tcgtcgcggt ttgaggctgg gtcggcaact gtttcaactg acgagcacct
     2401 gctcgagcgt atttccgcgg cggagaaccg gaccgcgcgt ctggcggaac gtctggaacg
     2461 cagtctcgat ctgctgctgc gttacgcgca gaatgcttac ttcgaccgtt cgctgacgag
     2521 ggcgttgatt tcgctgctcg aggaagacgg cgtggtgcaa tcggagcggt tggagcggct
     2581 ctggagtgag cgctgcgaac gcgatgcgct cgaacaggaa gagagtgttc atcgcgacga
     2641 gttgcggctg cggattctgg cccacgcgca cgcgatggac cggccggtct ttgaagaact
     2701 ggtcaacgag ggttttctgc tgatcgaaga caagcaggtt caggagggaa ttaccaagct
     2761 ccagcgtgcc gccgagatgg aagacgagaa cgcggcgttg aacctgtacc tcggcgaaca
     2821 ctatttccgt cgcggcaaga gcaaacgtgc acgcacgtac ctgatgcggg cgcacgaggc
     2881 gttaccggat gacgttcgcg tttcgttgtt gctcgggttg gcgtgtgcgg atgacggtga
     2941 agtcgaacag gcgaaggatc ttttgcg
//
LOCUS       DASWTX010000798         3214 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_362657, whole genome shotgun sequence.
ACCESSION   DASWTX010000798 DASWTX010000000
VERSION     DASWTX010000798.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3214
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362657"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1862)
                     /locus_tag="VGD38_12045"
     CDS             complement(<1..1862)
                     /locus_tag="VGD38_12045"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015970 - guanosine tetraphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEY0728796.1"
                     /translation="MIRIEDIVEKVAANHPQADLDLVRRAYLFSAKEHKGQKRASGES
                     YLVHPLEVANILAEMKLDEVSVATGLLHDVVEDTLVELDTIRRFFGEEITHLVDGLTK
                     IAQISNISREEQQAENVRKMLLAMVDDVRVVLVKLADRLHNMRTLQYLNPEKRKRIAE
                     ETMEIFAPIAHRLGMGKLRGELEDLAFRHLHPEDYRELAEQLEKRRPENEAFLKGVTA
                     RIEEKMNEAEVPFVLVEGRVKRLYSIWKKLRAQKITIDQVYDLVAARIITPNEIRHCY
                     AALGVVHNNWKPVPGRIKDWIATPRDNLYQSLHTSVIGSNLQSFEVQIRTEEMHQIAE
                     EGVAAHWKYKEGKRGAREDDQALAALRSLVEWTQEVKDSKDFLDSLKLDLYPKDVYAF
                     TPMGKVIQLPRGATPVDFAYMIHSEVGNTCTGARINGRMVPLRTQIQNGDVVEIVTTT
                     NSHPSRDWLNFIVTSRARNRVRHWVAEQQRTESIEIGRKLFEKEAARFQLSPKKVLSD
                     TDKDMKRVASDYGYGRVDDLLAAIGYGKLVPRNVIAKYLGPEQFEQLDKQKESRLRSG
                     VRAVKRLIRLGDDSILVRGIDDLMVTRARCCNPLHGEEIIGYVTRGKGVAVHTTR"
     gene            complement(1974..2849)
                     /locus_tag="VGD38_12050"
     CDS             complement(1974..2849)
                     /locus_tag="VGD38_12050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728797.1"
                     /translation="MKLAQTRIVIAIAGAIVLAILVATSSGCGVINRIRSKNQLNEAA
                     RAYREGNFVEAEQHSRRAAELDPNNKTAPMFIARTIHAQYRPGVQAPENIAKAQEAIQ
                     AYQRLLERNPSDDEAYKAIAYLYGAIKDNEKLKQWITARATNEAAEPTKRAEAYVVLA
                     SKDWECSFQITESPTNKVTTVDQASNKATVSYRKPAEQKEFDQAQMCVKQGLSEAENA
                     IKFDPNNESAWSYKTNLLLEASKLAEMEGQTDAKAQYQKQYEAALKRTTELSAAAEKR
                     KEEEARQQASPPVSQ"
     gene            complement(2870..>3214)
                     /locus_tag="VGD38_12055"
     CDS             complement(2870..>3214)
                     /locus_tag="VGD38_12055"
                     /inference="COORDINATES: protein motif:HMM:NF014525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEY0728798.1"
                     /translation="TEDLSQLKPNPLTLVVSIAPDLSIKLNQDNMGSVNDPSALAQRL
                     VLVFAQRKDQRAYKIGMETRTDLKEEDRIEKTVFVKAPRSLRYGEVVKVIDAIKGAGA
                     NPVGLQVDDLPQ"
BASE COUNT          592 a          942 c          891 g          789 t
ORIGIN      
        1 cgcgtcgtgt gcaccgcgac gcctttgccg cgcgtcacgt aaccgattat ttcttcgcca
       61 tgaagcggat tgcagcaacg cgcgcgcgta accatcaggt cgtcgatgcc gcgtacgagt
      121 atcgagtcgt cgcccagccg gatcaggcgc ttaaccgcgc gcacgccgct gcgcaaacgc
      181 gactctttct gcttgtcgag ctgttcgaac tgttccggac cgagatactt cgcgatcacg
      241 tttcgcggca cgagcttgcc gtaaccgatc gccgccagga gatcgtccac gcgcccgtag
      301 ccgtaatcgc tcgccacgcg cttcatgtcc ttgtcggtat cgctcaacac cttcttcggc
      361 gagagttgga aacgcgcggc ttccttctca aacagcttgc gtccgatctc gatcgattcg
      421 gtgcgttgct gctcggcgac ccagtgacgc acgcgattgc gcgcgcgcga agtgacgatg
      481 aagttcaacc aatcacgcga tggatgcgag ttggtggtcg tgacgatctc gacgacgtcg
      541 ccgttctgaa tctgcgtgcg caacgggacc atgcgcccgt tgatgcgcgc gccggtgcag
      601 gtgttaccca cttcggagtg aatcatgtag gcgaagtcga ccggcgtcgc gccgcgcggc
      661 aactggatca ctttgcccat cggcgtgaac gcgtaaacgt ccttgggata taggtcgagc
      721 ttcagcgagt cgaggaagtc tttggaatcc ttgacctcct gcgtccattc aacgagggat
      781 cgcagcgcgg ctagagcctg atcgtcctcg cgcgcgccgc gcttcccttc cttgtacttc
      841 caatgcgcgg caacgccttc ctccgcgatc tggtgcatct cttccgtgcg aatctgcact
      901 tcaaacgatt gcaggttgga gccgatcacc gacgtgtgca gcgactggta caggttgtcg
      961 cgaggcgtgg caatccagtc tttgattcga cccggcacgg gtttccaatt gttgtgtacg
     1021 actcccagcg cggcataaca gtgacgtatc tcattcggcg tgatgattcg cgcggccacg
     1081 agatcgtaaa cctgatcgat cgtgatcttc tgcgcgcgca gttttttcca gatcgaatag
     1141 agccgtttga cgcgaccctc gacgagcacg aacggcactt ccgcctcgtt catcttttct
     1201 tcgatccgcg cggtcacgcc tttcagaaac gcttcattct ccgggcgccg tttctccagt
     1261 tgttcggcca gctcgcgata gtcttccggg tggaggtgtc gaaacgcgag gtcttcgagc
     1321 tcgccgcgca acttacccat tccgagccga tgcgcaatcg gcgcgaagat ttccatcgtc
     1381 tcttccgcga tgcgtttgcg tttttcggga ttcaggtatt gcaacgtgcg catgttgtgc
     1441 agccgatcgg cgagcttcac aagcacgaca cgcacgtcgt cgaccatcgc cagcaacatc
     1501 ttgcgaacgt tttccgcctg ctgctcttcg cgcgagatgt tgctgatctg cgcgatcttc
     1561 gtcaggccgt cgacgaggtg cgtgatctct tcaccaaaga aacggcggat cgtgtcgagc
     1621 tcaacgaggg tgtcttcgac aacgtcgtga agcaaaccgg tcgcgaccga cacttcgtcg
     1681 agcttcattt cggcgaggat attcgcgacc tcgagcgggt ggacaaggta cgactcaccc
     1741 gacgcgcgct tctggccctt gtgttctttt gcggaaaaaa ggtaagcgcg acggactaga
     1801 tcgaggtctg cctgcgggtg attagcggcg accttctcga cgatatcttc gatccggatc
     1861 atctcaacga tcaaagtata acaaaggcca cagatttcac ggactaacac gaatcagaac
     1921 tgatcggtgt tagcccgtga agtctgtggc cgaaccttgc gggaaacgta aacctactga
     1981 cttacaggcg gcgaagcctg ttgccgcgct tcttcttcct tccgcttttc agcggccgca
     2041 ctcaactcgg tggtgcgttt caaagcggct tcatactgct tctggtactg ggccttggcg
     2101 tcggtttgac cttccatctc ggcgagcttg gaggcttcga gaaggaggtt ggtcttgtaa
     2161 gaccacgccg actcgttatt tggatcgaac ttgatcgcgt tctccgcctc ggacaagccc
     2221 tgcttcacgc acatctgggc ctgatcgaat tccttctgct ccgcaggttt gcgataggag
     2281 acggtcgctt tattgctggc ctgatcgacg gtagtgacct tgttagtcgg gctttcagtg
     2341 atctggaacg agcactccca atccttgctg gcgagtacca cgtaggcttc ggctcgcttc
     2401 gtcggttccg ctgcctcatt ggtggcgcga gcggtaatcc actgtttgag cttctcgttg
     2461 tccttaatgg ccccgtagag ataggcgatt gccttgtaag cttcgtcgtc actcgggttc
     2521 cgctccaaaa gcctctgata cgcctgaatg gcttcctgcg ctttcgcaat attttccggc
     2581 gcctggacac ccggacggta ttgcgcgtga atcgtgcgtg cgatgaacat gggcgccgtc
     2641 ttgttattcg ggtccagttc agccgctctg cgcgagtgct gttccgcctc gacgaagttg
     2701 ccttcgcgat aagcgcgcgc ggcttcgttt aattgattct tggatctgat tctattaatg
     2761 actccgcacc cggagctggt tgcaacgagg atcgccaaaa caattgcgcc ggcaatggca
     2821 atgacgatcc tggtctgagc gagtttcatt tatcggtgac tccaattagt tactgaggca
     2881 gatcgtccac ttgcaaaccg accggatttg cgccggcgcc cttgatcgcg tcaataactt
     2941 tgacgacttc gccatagcgc aatgatcgcg gcgcttttac gaagaccgtc ttctcgatgc
     3001 gatcctcttc tttcaagtcc gtccgcgttt ccattccaat tttataagcg cgttggtctt
     3061 tccgttgcgc gaaaacgagc accaatctct gcgccaaagc tgaagggtca ttgactgagc
     3121 ccatgttgtc ctgattcagc ttgatcgaga ggtcaggcgc aatcgagacc accagtgtca
     3181 gcggattagg ctttagctgg ctaagatctt cagt
//
LOCUS       DASWTX010000799         2509 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_421913, whole genome shotgun sequence.
ACCESSION   DASWTX010000799 DASWTX010000000
VERSION     DASWTX010000799.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2509
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421913"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1882
                     /locus_tag="VGD38_12060"
     CDS             <1..1882
                     /locus_tag="VGD38_12060"
                     /inference="COORDINATES: protein motif:HMM:NF042645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6600 domain-containing protein"
                     /protein_id="HEY0728799.1"
                     /translation="TRDNSRASLAFTGRNFARLNPNTSLDVLTLNDERTQLALRDGSA
                     VFDVGYLDEGDLFEVATPYGAVDFQQPGLYNVGIDNGQVLVSVLSGLAQVVGMGGSGQ
                     ISKGEMLTLLGQTAADVVLSRLDGRDAGYLVDDYYSYQYPRYYDGRYRDYNTYVSDPY
                     YFDPYRRSVSYQYVNSYIPGLYDLDYYGDWQNVNGYGYAWSPRVDAGWMPYQSGYWMN
                     DYPYGPTWISNEPWGYAPYHYGRWAFVGDRWYWVPDSSRSTPYYSPALVAFVPFGNND
                     IGWVPLGPGDTYVPHYYNTSWEPYYLTRDDLYLRGVNLNVPGAVTVVSADEFFRGDDW
                     RRARRADRNMLANVNPVLDPLLATPLRNAVVNSAWGRGKKDIPPGIARKLHDTTVITS
                     RGLDSPRFRPDLARSMRVEPVSDRAKGQKFKVRDERGAPQASNGQPVETFNNGRGNDR
                     GNDRTDRGNDRTDRGGGPPQTFRNDRGGPPAREVPRANEQRGNDRRNAAPQAERAPRP
                     ASPRGERVSRPAPQRTERPAPKAERPSRPAQPQAERVSRPVERPRQQAQPRPQAAPKG
                     RVMRTEAGPSRPQQQPPAARSQPGPAKQQQRAEPKQQQQKQQAPAKSAPGGGGKGRGK
                     KP"
     gene            1977..>2509
                     /locus_tag="VGD38_12065"
     CDS             1977..>2509
                     /locus_tag="VGD38_12065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728800.1"
                     /translation="MKKQPQQPQNSQLPNRRAFLGRVSVAGAATIAAGVVGVEPLLQT
                     RRSQIQAATNGSNQRANACAKLRRDAAQTGMQSTPQNLQHPNNNDEDLYPNKLGSYSK
                     GLPHNDDGSVVLSAYQSLVKAVNTGSPADFDAIPMGGARLLTNPQAGLAFDMEGPDAH
                     ALVQPPAPAFASRAQAA"
BASE COUNT          542 a          781 c          754 g          432 t
ORIGIN      
        1 cacgcgcgac aactcgcgcg cgagtctggc gtttacggga cgcaacttcg cgcggctgaa
       61 tccaaacact tcgctcgacg tgctcacgct caacgacgag cgcacgcaac tggcactgcg
      121 cgacggctcg gcagtgtttg acgtcggcta tctcgacgaa ggtgacctgt ttgaagtagc
      181 gacgccgtac ggcgcggtcg attttcagca accgggtctt tacaacgtcg gtatcgacaa
      241 tggccaggtg ctggtttccg tgttgagcgg tctggcgcaa gtcgtgggta tgggcggcag
      301 tggacagatc agcaagggcg agatgctgac gctgcttggt caaaccgcgg cggacgtcgt
      361 gctttcgcgg ctcgacggac gtgacgccgg ttacctcgtc gacgattatt actcttatca
      421 gtatccgcgt tactacgacg gccgctatcg cgactacaac acttatgtga gcgatcctta
      481 ctacttcgat ccgtatcgac gctcggtaag ttatcaatac gtcaactctt atattcccgg
      541 actgtatgac cttgactact acggcgactg gcagaacgtg aacggctacg gttacgcgtg
      601 gtcgccgcgt gttgatgcgg gctggatgcc gtatcaatcg ggttactgga tgaatgatta
      661 cccgtatggt ccaacgtgga tctcgaacga accgtggggt tatgcgcctt atcactatgg
      721 gcgctgggcg ttcgtcggcg atcgctggta ttgggtgcct gattcgtcga ggtccacgcc
      781 gtactattca ccggctctcg tggcgttcgt tccgtttggc aacaacgaca tcggctgggt
      841 gccgcttgga ccaggcgaca cttacgtgcc gcactactac aacacgagtt gggaaccgta
      901 ttacctgacg cgtgacgatc tgtacctgcg tggtgtgaat ttgaacgtgc cgggcgcggt
      961 gacggttgtg agtgctgacg agttcttccg cggcgacgat tggcgtcgtg cgcgcagagc
     1021 agatcggaac atgctcgcga acgtgaatcc ggtgctcgat ccgttgctgg cgacgccgct
     1081 gcgcaatgcg gtcgtgaatt cggcgtgggg acgtggcaag aaagacatac ctccgggtat
     1141 cgcgcggaag ctccacgaca cgacagtgat cacgagtcga ggactcgatt cgccgcggtt
     1201 tagacctgac cttgcgcgat cgatgcgggt cgaacctgtt tcggatcgtg cgaagggtca
     1261 gaagttcaag gtgagggacg agcgaggagc accgcaggcg tcgaacggtc agcctgtcga
     1321 gacgttcaac aatggccgcg gtaacgatcg cggcaacgac cggacggacc gtggtaacga
     1381 ccggaccgat cgcggtggtg gtccaccgca gacgttccgc aacgatcgcg gtggtccacc
     1441 ggcgcgtgaa gtgcctcgtg cgaacgagca gcgtggcaac gatcgccgca acgccgcgcc
     1501 gcaagcggaa cgcgcgccga gacccgcctc accgcgaggc gaacgcgtct cacgcccagc
     1561 gccgcagcgt accgagcgac cggcgccaaa agccgaacgg ccttcgcgac cggcgcaacc
     1621 gcaagccgaa cgcgtgagcc gtccggttga acgtccacgg caacaagcac agccgcgacc
     1681 gcaggctgcg ccaaaaggcc gcgtgatgcg tactgaggcc ggcccctcgc ggccgcagca
     1741 acagccacct gctgcacgct cgcagcccgg gcctgcgaaa caacagcagc gtgctgaacc
     1801 gaagcaacaa cagcagaagc agcaggctcc tgccaagtcc gcaccgggcg gcggcggcaa
     1861 aggccgaggc aaaaagccct agtgtaacga cgatgaaata aaaaccttca gttgttcttc
     1921 catctgtggt aaaaaccacg gccccagact aaccccaccc agatggagga acaatcttga
     1981 agaaacaacc ccaacaaccc caaaactccc aactacccaa tcgacgtgca tttctcggcc
     2041 gcgtaagtgt cgccggcgcg gccacgatcg ccgccggagt cgtcggcgtc gaacccttgc
     2101 tgcaaacgcg gcgctcccaa atccaggcag ccaccaacgg ttccaatcaa cgcgccaacg
     2161 cctgcgcgaa gctacgccgt gacgccgcgc aaacaggcat gcaatccacg ccacaaaacc
     2221 tgcaacaccc aaacaacaac gacgaagacc tctacccaaa caaactcggc agctattcaa
     2281 aaggactgcc gcacaacgac gacggcagcg tcgtgctcag tgcgtatcaa tcgttggtga
     2341 aagcagtaaa cactggttca cctgccgact tcgacgcgat cccgatgggc ggcgcgcgtt
     2401 tgttgaccaa cccgcaagcc ggtctcgcct tcgacatgga aggtcccgac gcgcacgcgc
     2461 tcgtgcaacc accagcgccg gcgtttgcga gccgcgcgca ggcggccga
//
LOCUS       DASWTX010000800         1736 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_99679, whole genome shotgun sequence.
ACCESSION   DASWTX010000800 DASWTX010000000
VERSION     DASWTX010000800.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99679"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..684)
                     /locus_tag="VGD38_12070"
     CDS             complement(<1..684)
                     /locus_tag="VGD38_12070"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY0728801.1"
                     /translation="MPEEPQENLFLKCLLEANVDGIIAFDRDFRYTTWNRAMERISGV
                     KREDVLGKCAFELFPCLRETGEDQFYLAAVAGRSVVADNRPFTMEGKTGYFDGYYSPR
                     HDEKGEVIGGVAIIRDVTERKVAEASALDDHKRLAFHVENTPLAVIEWDHEFRVLRWS
                     PAAQRLFGWKAEEVLGKHFSDWEFVVPEDIDAVNQVGERQNQGTEQQGISRNRNYTKL
                     GNILHCEWYN"
     gene            719..>1736
                     /locus_tag="VGD38_12075"
     CDS             719..>1736
                     /locus_tag="VGD38_12075"
                     /inference="COORDINATES: protein motif:HMM:NF014896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728802.1"
                     /translation="MRHFKSLAPYALVVLVLACSQIAVAQQPVKQYTIEQFMNTVRIG
                     GSSFSADEKSILFHNNKSGIFNVYSVPVAGGEATQLTKSTKESTYAVSYFPNDARILY
                     TYDRGGNENNHLYLRELDGTERDLTPGEKTKANFLGWSHDRKSFFFSTHERDPRFFDI
                     YEMPIDTFKPAMIYKDQMGLDFAAISNDKKYIAFDNSGGSQADSNVVLYNTVTKDLDI
                     ITAHMDEMSNQAQEFDLNSKHLYYLTDDGSQFRYVMRYDLKSRDTKVIEKAPWDISYT
                     YFSRNGKYRVTAINEDARTKIKIYEQATGKLVDLPKLPNADITGVNISPSEKLMAFYL
                     NGDRS"
BASE COUNT          402 a          521 c          445 g          368 t
ORIGIN      
        1 gttgtaccac tcgcaatgaa gaatgttgcc gagctttgtg tagttacggt tgcgcgagat
       61 gccctgttgt tccgtgccct ggttctggcg ttcgccgacc tggttcacgg cgtcgatatc
      121 ttccggaacg acaaattccc aatcgctaaa atgtttcccg agcacctctt ccgctttcca
      181 gccgaagaga cgctgcgcag cgggcgacca gcgcaacacg cgaaattcat ggtcccactc
      241 gatgacggcc agcggtgtgt tttcaacgtg aaaggcgaga cgcttgtgat cgtcgagtgc
      301 ggaagcttca gcgactttgc gttcggtaac gtcgcgaatg atcgccacgc cgccgatcac
      361 ttcgcctttc tcgtcgtgcc gtggtgagta gtaaccgtcg aagtatccgg tcttgccctc
      421 catcgtgaac gggcgattat ccgcgacgac gctgcggccg gcgactgccg cgagatagaa
      481 ctgatcttcg ccagtctccc gcaaacatgg aaacagctcg aacgcgcatt tgccgagcac
      541 gtcttcgcgc ttcactcccg agatacgctc catcgcccga ttccacgtcg tgtagcgaaa
      601 gtcgcgatcg aacgcgatga tgccgtcgac gttggcttcg aggaggcact tgaggaatag
      661 attttcttga ggttcttcag gcattggctt tatttccagg aggcgctact ttatcaccat
      721 gagacacttc aaatcactag ccccctacgc tctcgttgtg ctcgtcctcg cgtgctccca
      781 aatcgcggtt gcgcagcaac ccgtaaagca gtacacgatc gagcaattca tgaacaccgt
      841 ccggatcggc ggcagctcgt tctccgctga cgagaagtcg atcctgtttc acaataacaa
      901 atcaggcatc tttaacgtct actcggttcc ggttgccggc ggcgaagcca cgcagttgac
      961 gaagtccacg aaagagagca cgtacgcggt ttcttatttt ccaaacgacg cgcgcattct
     1021 ctacacgtac gatcgcggcg gcaacgagaa caatcacctt taccttcgcg aactggacgg
     1081 cacggaacgc gatctgacgc ccggcgagaa gacgaaagcg aacttcctcg ggtggagtca
     1141 cgatcgcaag tcgttcttct tctcgacaca cgaacgcgac ccgcgcttct tcgacatcta
     1201 cgagatgccg atcgacacgt tcaagccggc aatgatttac aaagaccaaa tggggctcga
     1261 cttcgctgcg atctcgaacg acaagaagta catcgctttc gacaacagcg gcggttcaca
     1321 ggctgactcg aacgttgtcc tctacaacac ggtcacgaaa gatctagaca tcatcaccgc
     1381 tcacatggac gagatgtcga accaggcgca ggagtttgac ctcaactcga agcaccttta
     1441 ctacctcacc gacgacggca gccagttccg gtacgtcatg cgttacgacc tcaagtctcg
     1501 cgacacgaaa gtcatcgaga aagcgccgtg ggacatttcc tacacctact tctcgcgcaa
     1561 cggaaaatat cgcgtcaccg cgatcaacga agacgcgcgc acgaagatca agatctacga
     1621 gcaagcgacc ggcaaactcg tcgacctgcc gaagcttccg aatgctgaca tcaccggcgt
     1681 gaacatctcg ccgagtgaaa agttgatggc gttttatctc aacggcgatc gcagcc
//
LOCUS       DASWTX010000801         1635 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_421924, whole genome shotgun sequence.
ACCESSION   DASWTX010000801 DASWTX010000000
VERSION     DASWTX010000801.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1635
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421924"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..763
                     /locus_tag="VGD38_12080"
     CDS             <1..763
                     /locus_tag="VGD38_12080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY0728803.1"
                     /translation="DKSRAVLESGEEIESRVVVSNGDPRTTFLKLVDPVDLDPNFLSK
                     MRNFRAPGAAGKINLALSGLPRFNGGDPQKLTGRIHIGPEIDYLERAFDASKYGEFSA
                     EPYLDITIPSIADPSLAPDGKHVMSIHVQFAPYKLKQGDWTTRSEEFAENVLDVLEQY
                     APGVRELALAAQVITPLELERDYGLSGGHIHHGEQSLDQFFTFRPLIGWAQYRTPLRR
                     LYLCGAGTHPGGGLTGLNGFNAAREIARDFKSGKV"
     gene            778..>1635
                     /locus_tag="VGD38_12085"
     CDS             778..>1635
                     /locus_tag="VGD38_12085"
                     /inference="COORDINATES: protein motif:HMM:NF013384.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-eliminating lyase-related protein"
                     /protein_id="HEY0728804.1"
                     /translation="MSKRSFASDNNAGVHAEVLDALKAANDGHVVAYGDDPFTARAVK
                     VFQKHFGKDIAVYFVFGGTGANVLGLKAMTKSYEAVVCAETAHINVDECGAPEKFTGC
                     KLLAVKTPDGKIRVDQIKPFLHGVGFEHHVQPRVISVSQATEMGTVYTKAELKTLARF
                     AHDNNMLLHVDGARIANAAASLNAKLQEITVDCGVDVLSFGGAKNGMMYGEAVVFLNK
                     QLGDNFKYIRKQGMHLPSKMRFISAQFETLLSGDLWRRSAEHANRMARVLGSELEKIP
                     GIKLTQPVDA"
BASE COUNT          355 a          508 c          468 g          304 t
ORIGIN      
        1 cgacaagtcg agggccgtgc tcgagagcgg cgaggagatc gaatcgcgcg tcgtcgtctc
       61 caacggggat ccgcgcacga cgtttttgaa actcgtggat ccggtcgatc tcgatccgaa
      121 cttcctttcg aagatgcgca actttcgcgc gcccggcgcc gccggaaaga tcaatctcgc
      181 gttgtcaggc ttgccacgtt tcaacggcgg cgatccgcag aaactgaccg gacgcattca
      241 cattggaccg gagatcgatt atctcgaacg cgcgtttgac gcgtcgaagt atggtgagtt
      301 ttccgcggaa ccgtatcttg acatcacgat tccctcgatc gccgatccgt cgcttgcgcc
      361 tgacggcaag catgtgatgt cgattcacgt gcagtttgcg ccgtacaaac tgaagcaagg
      421 tgattggacc acgcgcagcg aagagtttgc ggagaacgtg cttgacgtgc tcgagcagta
      481 tgctccgggc gtgcgcgagt tggcccttgc ggcgcaggtg atcacgcccc ttgagcttga
      541 gcgcgattac ggattgagtg gcggacacat tcatcacggc gaacagtcgc tcgatcagtt
      601 ctttacgttc cgcccgttga tcggctgggc gcagtaccgc acgcccttgc ggcgtttgta
      661 tctttgcggc gccggcacgc atcccggcgg cggcctgacc ggcctcaacg gcttcaacgc
      721 cgcccgcgag atcgcgcgcg acttcaaatc gggcaaagtc tgatccgcta aaatcccatg
      781 tctaaaagaa gtttcgctag cgacaacaac gccggagttc acgccgaagt ccttgacgct
      841 cttaaagccg cgaacgacgg acacgtcgtc gcttacggcg acgatccttt caccgccaga
      901 gcggtgaaag tcttccaaaa acacttcggc aaagacatcg ccgtctattt cgtcttcggc
      961 ggcacgggcg cgaacgtgct cggcctcaag gccatgacca agtcgtacga agccgtcgtc
     1021 tgcgccgaga cagcgcacat caacgtcgac gagtgcggcg cgcccgaaaa gttcaccggc
     1081 tgcaaacttc tcgccgtcaa aacgcccgac ggcaagattc gcgtggacca aatcaaacct
     1141 ttcctgcacg gcgtcggttt cgaacatcac gtgcaaccgc gcgtgatctc cgtctcacaa
     1201 gccaccgaga tgggcaccgt ctacacgaag gccgaactca aaacactcgc gcgcttcgct
     1261 cacgacaaca acatgctcct gcacgtcgac ggcgcgcgca tcgcaaacgc cgccgcgagc
     1321 ctgaatgcga agctgcaaga gatcaccgtc gactgcggcg tagacgtgct ttcattcggc
     1381 ggcgcgaaga acggcatgat gtacggcgaa gccgtcgtct tcctgaacaa gcaactcggc
     1441 gacaacttca aatacattcg caaacaaggc atgcacctgc cgtcgaagat gcgtttcatc
     1501 tccgcgcaat tcgaaacgtt gctgtcaggc gacctgtggc ggcgcagcgc ggagcacgcg
     1561 aaccggatgg cgcgcgtgtt gggcagcgaa ctggaaaaga tcccgggcat aaaactgaca
     1621 cagccggtcg acgcc
//
LOCUS       DASWTX010000802         4260 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_204635, whole genome shotgun sequence.
ACCESSION   DASWTX010000802 DASWTX010000000
VERSION     DASWTX010000802.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4260)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4260)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4260
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204635"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..224
                     /locus_tag="VGD38_12090"
     CDS             <1..224
                     /locus_tag="VGD38_12090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728805.1"
                     /translation="ETMKSPSVNEQQALAQLDKVLEIEREVKRLHIGLAVRLKNRLTP
                     EQQEQLHKWRMEHQPPQPRSPDNPPNPTP"
     gene            complement(226..957)
                     /locus_tag="VGD38_12095"
     CDS             complement(226..957)
                     /locus_tag="VGD38_12095"
                     /inference="COORDINATES: protein motif:HMM:NF014698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HEY0728806.1"
                     /translation="MLRSAEKVTVQLRMSIPDTSPATTAPALPPEVADRSAWYEAKLA
                     KSDEWIVRLSDAEIAEVERAIQSIERSGVELTTITAANIPLPTLRPRLDELLDEVLNG
                     RGFVLIKGLPVHRWSRREAAVAFLAIGVHLGNLRMQNAAGHLLGHVRDLGRSSDDPKL
                     NLPMELQPGDIQLVHNHTILHDRTAFEDYAEPERKRHLLRLWLAPEGARKLPEVFAER
                     FGSTTPGERGGVGVAGPTLSVPLEF"
     gene            1032..1757
                     /locus_tag="VGD38_12100"
     CDS             1032..1757
                     /locus_tag="VGD38_12100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728807.1"
                     /translation="MSAFPRRQTPTNQDVVSRARNAYYSLARKGFKGFTATIEPNWEV
                     ILAQTATQENLKIFRAVRFSMVVDANGAVTVTHEVDASASGSKLQPTVDRIHGDVRRL
                     VTGFFNTWRLFVVSSPFPETENQLKLETLGKQYRLVSNTPSGEVTIALTDELLIKEWN
                     IIAPTVKRTVKPQFQKTAGGFLLTAYKQIFEPVGNGIKTTLDFHIEYQDFNGMKVPQK
                     VRFNGMHGSEPVEAELAFRIKVS"
     gene            1851..2357
                     /locus_tag="VGD38_12105"
     CDS             1851..2357
                     /locus_tag="VGD38_12105"
                     /inference="COORDINATES: protein motif:HMM:NF027567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEY0728808.1"
                     /translation="MSATQPRTDDLEKLREMIKDIDFCMLTTIDEQGDPHSRPMSSNG
                     DIDPNGDLWFFTGLSSHKVSEVERSPKVNVSFADPENQRYVSVTGVAQLVRDPRKIDE
                     LWRPQFKMWFPEGQDDPDICLLKVRLEKGEYWDSPSSTVAYALSFVSSLVTGKQPDLG
                     ENRKVDLK"
     gene            2364..3260
                     /locus_tag="VGD38_12110"
     CDS             2364..3260
                     /locus_tag="VGD38_12110"
                     /inference="COORDINATES: protein motif:HMM:NF013328.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase family
                     protein"
                     /protein_id="HEY0728809.1"
                     /translation="MPEGPEVRKYADALDEVLGGRVILSLAARTKDARKWLEHNERHI
                     TGRRVERVVSHGKHLIGYISGGYFFHSPLMMWGRWRTFTEPPEKDRRERARIVVEGGA
                     AILLSAPIFNVGKGDPYKAIEILATLGPDALPYRGRFNRREFQSRLQQHPNETIGASL
                     LNQQIVAGLGNYLRAEILFNCKLNPWLTVRELTTRNVSCLSRSIPQITADAYKRGATA
                     SDADRQRMASDPALVYQPGREYGTRHLVFRRTNLPCLRCGETIRQLRQKTIQSVDEEG
                     ERTRIVYFCAQCQGVNISNLRS"
     gene            3434..4012
                     /locus_tag="VGD38_12115"
     CDS             3434..4012
                     /locus_tag="VGD38_12115"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEY0728810.1"
                     /translation="MKRSGDLMTPPESPDELLVMAAILGNLEAFEQLVVRYRPAVVRL
                     ARSIVGADYAEDVAQDSLLLAFKALPSIEEPRKFAAWLSAITRHRALRFSKSETMHSS
                     KRVPLDEALLEKIEALAKPQHDRALAEKERDEAMVAAIDTLTDDYAMPLRLRFFDEMP
                     LERIAAFMGVPLSTVKWRIHHGKKMLRAKLEA"
     gene            4030..>4260
                     /locus_tag="VGD38_12120"
     CDS             4030..>4260
                     /locus_tag="VGD38_12120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728811.1"
                     /translation="MEQETVKLLSVLRRIARAARYAEWTRSGPDATQFCAAQYNRVLA
                     RLGELEPAIKPLFTPLSESASAEVIRMAARELH"
BASE COUNT          997 a         1256 c         1165 g          842 t
ORIGIN      
        1 acgagacgat gaaatcgccg tcggtgaacg agcagcaggc gctggcccaa ctcgacaaag
       61 tgttggagat cgaacgcgaa gtcaaacgct tgcacatcgg attggcagtg aggctgaaga
      121 atcggctaac cccggagcaa caggagcaac tgcacaagtg gcggatggaa catcagccac
      181 cgcagccccg aagtccggac aaccctccga atccgacgcc gtagttcaga attcaagcgg
      241 aacgctgagc gtcggtcctg ctacgccgac gccaccgcgt tcgcccggcg tcgtcgaacc
      301 aaagcgttcc gcaaaaactt cgggcagctt gcgcgcacct tccggcgcca gccacagccg
      361 taacaagtga cgtttccgct caggctcagc gtaatcctca aacgcggtgc gatcgtgcag
      421 gatcgtgtga ttgtgtacga gctgaatatc gcccggttgt agttccatcg gcaggttcag
      481 cttcggatcg tcgctcgaac gtccgaggtc cctgacgtgt ccgagcaagt gtccggcggc
      541 gttctgcatt cgcaagttgc cgagatgcac gccaatcgcc aggaaggcaa ccgctgcctc
      601 gcgccggctc caacgatgaa ccggcagacc cttgatcaaa acaaacccac gcccgttgag
      661 cacctcatcg agcagctcat cgagacgcgg gcgcagagta ggcagtggaa tattcgcggc
      721 agtaatcgtg gtgagctcga ctcccgatct ctcgatgctc tgaattgcgc gctcgacttc
      781 agcaatctcc gcatcggaca agcgcactat ccattcatcg ctcttcgcga gtttcgcttc
      841 gtaccaagca gaacgatctg caacctccgg cggaagcgct ggagccgttg ttgccggcga
      901 agtgtcagga atgctcatac gcagttggac cgtcaccttt tcggcggatc ttagcacctt
      961 ttcgttgtag tatttccgcc gtgaacccga ctcgcatagt ttgtgctctt ctgatcgtcc
     1021 tggtcctcac ggtgtccgcg tttccgcgtc gccagacacc taccaatcag gacgtcgtta
     1081 gccgtgcgcg aaacgcgtac tacagtctcg ccagaaaagg cttcaaggga ttcaccgcga
     1141 cgattgagcc aaactgggaa gtgatactgg cgcagactgc gacccaggag aacttgaaga
     1201 tctttcgcgc agtgcggttc tcgatggtcg tcgatgcaaa tggcgcagtc accgtgactc
     1261 acgaagtcga tgcgagcgcg tccggttcca aactgcaacc cactgttgac cggatccacg
     1321 gcgacgtgcg gcgcctcgta accggtttct tcaacacctg gcgcctcttc gtcgtgagct
     1381 caccttttcc ggaaacagaa aaccagctca agctcgaaac gctcggcaag caatatcgcc
     1441 tcgtttccaa cacgccgtcg ggcgaagtca cgatcgcgtt gactgacgaa ctcctgatca
     1501 aggaatggaa catcatcgca ccgactgtga agcgcacggt caagccgcag tttcaaaaaa
     1561 ctgccggcgg tttcttgtta acagcctaca agcaaatttt tgaacccgtc gggaacggca
     1621 tcaagacgac gctggacttc cacatcgagt accaggactt caacggaatg aaggtcccgc
     1681 aaaaggttcg attcaacgga atgcacggca gcgaaccggt cgaggccgag ctcgccttca
     1741 gaataaaggt cagttaaaaa gcaaaatctt tgcagccctt gcgacacgtc tctgtgacgc
     1801 tctctgctca aagtagaacc tttgaagttc tacaaaaggg gggctaagca atgtcggcta
     1861 cacaaccacg cactgacgat ctagaaaaac tccgcgaaat gatcaaagac atcgattttt
     1921 gcatgctgac tactatcgac gaacaaggcg atccacacag ccgcccgatg tcgtcaaacg
     1981 gcgacatcga tccaaacgga gatctctggt ttttcaccgg cttgtcgtct cacaaagtga
     2041 gcgaagtcga acgctcgcca aaagtgaacg tgagttttgc cgatcccgag aaccagcgct
     2101 acgtctccgt gaccggcgtc gcgcaactgg ttcgcgaccc acggaagatc gacgagctat
     2161 ggcggccgca gttcaagatg tggtttccgg aaggccaaga cgatccggat atttgtttgc
     2221 taaaggtgcg cctcgagaaa ggagagtact gggacagccc gtcgagcact gttgcgtacg
     2281 cgttgagctt tgtctcctcg ctcgtgaccg gcaaacaacc cgacctcgga gaaaacagga
     2341 aagtagatct gaagtaacac aggatgcccg aaggtccgga agtacgaaag tacgctgacg
     2401 cgctcgacga agtcttaggc gggcgcgtca ttctttcgct cgcagcacga accaaagacg
     2461 cgcgcaaatg gctcgagcac aacgagcgtc acatcaccgg ccggcgcgtc gagcgcgtcg
     2521 tctcacacgg caaacatctg atcggttaca tctccggcgg ctacttcttt cattcacccc
     2581 tgatgatgtg gggccgctgg cgaaccttca ccgaaccacc ggagaaagat cgccgtgaac
     2641 gcgcgcgtat cgttgtcgaa ggtggagcgg caatactgct ctcagcgccg atcttcaacg
     2701 tcggaaaagg cgacccgtac aaagcgatcg aaatcctcgc gacacttgga ccagacgcgt
     2761 tgccttaccg tggccgcttc aatcgacgag agttccaaag ccggcttcaa caacatccga
     2821 acgagacgat cggcgcttcg ttactgaacc agcagatcgt cgccggactc ggcaactacc
     2881 tccgcgccga aatcctcttt aactgtaaat tgaatccgtg gttgaccgtt cgtgaactca
     2941 ccacgcgcaa cgtgagttgc ttgtcgcgca gcatcccgca gataaccgcc gacgcgtaca
     3001 aacgcggcgc caccgcatct gacgcagatc gccaacgcat ggcgtccgat cccgcactcg
     3061 tctatcaacc cggccgcgaa tacggcacgc gccatctcgt ctttcgccgc acaaacctgc
     3121 cttgtttgcg ctgcggcgaa acgattcgac aactccgcca aaagacgatt caaagtgtcg
     3181 atgaagaagg cgaacgaacc cggatcgtct acttttgcgc gcagtgtcag ggtgttaata
     3241 tctcaaacct cagatcatga aactcgcgcc ttggatcaaa cgactcggct tttggggctt
     3301 tatgttcttc ctcgtgaagg gcctcctctg gctgctcgtc cctacactca tcgcattctg
     3361 ggcgagttct taactaccgc aaaactcaac taacttttcg ctcgtaactt gtctctatat
     3421 caacgtaaga cgcgtgaaac gatccggaga cctgatgaca ccgcctgaat cgcctgacga
     3481 actgctcgtg atggcggcga ttcttgggaa cctggaggcg tttgaacagc tcgtggtgcg
     3541 atatcggccg gcagttgtgc ggctcgcgcg cagcatcgtc ggcgccgatt acgcggaaga
     3601 cgtcgcgcag gattcgttac tgctcgcttt caaggcgctg ccttcgatcg aagagccgcg
     3661 caagtttgcg gcgtggctct cggcgatcac gcgtcaccgc gcgctgcggt tcagcaaaag
     3721 cgaaacgatg cactcgagca aacgcgtacc gttggacgaa gcgctgctcg aaaagatcga
     3781 agcgttagcg aaaccacagc acgaccgggc gctggccgag aaagaaagag acgaagcgat
     3841 ggtcgcggcg atcgacacgc taactgacga ctacgcgatg ccgttgcggc tgcgtttctt
     3901 cgacgagatg ccactcgaga gaattgccgc gtttatgggc gtgccgttgt cgacggtgaa
     3961 gtggaggatt catcacggca agaagatgtt acgcgccaaa ttggaagcct gaatattaag
     4021 gagaagttta tggagcaaga aacagtcaag cttttaagtg tcttgcggcg aatcgcgcgc
     4081 gccgctcgtt atgccgaatg gaccaggtcc ggtccggatg caactcagtt ctgcgccgct
     4141 cagtacaacc gtgtacttgc gcggctcggc gagctcgaac ccgcaatcaa gccattgttc
     4201 acgccgttga gcgagtctgc atcggcggaa gtgatccgca tggccgcgcg cgaattgcac
//
LOCUS       DASWTX010000803         4784 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_296144, whole genome shotgun sequence.
ACCESSION   DASWTX010000803 DASWTX010000000
VERSION     DASWTX010000803.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4784
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296144"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1416)
                     /gene="rmuC"
                     /locus_tag="VGD38_12125"
     CDS             complement(<1..1416)
                     /gene="rmuC"
                     /locus_tag="VGD38_12125"
                     /inference="COORDINATES: protein motif:HMM:NF014680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HEY0728812.1"
                     /translation="MEVLLPASMLALGFVVGAFSLWLLSRTKLRYEFERGRAEGDTER
                     ATLIERLSGKEGQLLDLQQALDREKDESERLRGENAANLANLLALQTRLEDERRASAE
                     KLALLSTAEEKLTDAFKALSADALRNNNRSFLDLAKQNLETFQQNAKGDLDGRQRAIN
                     ELIKPLKESLEKVDGRIGELEKTRAGAYSELREQVKVLAQSHLQLQSETGNLVKALRA
                     PHVRGRWGEIQLRRVVELAGMLQYCDFIEQETVNGEDVRIRPDLIVHLPGKRTIVVDS
                     KVPFDAFYESIAATDEEVRASRLKDHARLVRTHINNLSRKAYWETVQPTPEFVLLFLP
                     GETFYNAALENDPKLIEDGVAQNVIIATPTTLIALLKAISYGWSQEQMAKNAQEVSNL
                     AKTLYERIRIFTKHFDEVGRSLDRALEFYNKGVGSLETRVLVTARRFKARGALAGEEI
                     EILEPVDNAARALALDEGGLFP"
     gene            complement(1485..2453)
                     /locus_tag="VGD38_12130"
     CDS             complement(1485..2453)
                     /locus_tag="VGD38_12130"
                     /inference="COORDINATES: protein motif:HMM:NF021613.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease H-like domain-containing protein"
                     /protein_id="HEY0728813.1"
                     /translation="MTSVRERRTQQGRLYYDVSARNATGSIFLRIWEEVAKTQTPPTP
                     GLWAVRGKLESFQDKVQFVVAEYRATTIEKYREHQHAEPQLPRAFTFDIETLTLPDFR
                     ERVGPQLERQMRLGNMRVEQQQRYLEDIAAEEERCYALGSLSATSGRVLSIAVHVGPI
                     PGLEFPGLGPVESEHVFGIDRDGFEQPEKRALLDFLALLKDFDCECDELVGHNIIGFD
                     LPFIFQRCLVHEIQVRPFVNLSDYNVRGVFDTMHRWWLGARRNVSLDDIAWALGIESS
                     KTSEVEGSKVFDLYQAGKLDSIRDYNLSDVRVTRKIYERIVASFGR"
     gene            complement(2516..2830)
                     /locus_tag="VGD38_12135"
     CDS             complement(2516..2830)
                     /locus_tag="VGD38_12135"
                     /inference="COORDINATES: protein motif:HMM:NF017897.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF962 domain-containing protein"
                     /protein_id="HEY0728814.1"
                     /translation="MSEERYQSFSEFWPFYVAEHSHPGTRVLHLIGTAVGMALVVYFI
                     ATGRWWLFLLGFIPGYAFAWLAHFLIEKNRPATFKYPLWSLMGDYKMIGLMLTGKMGW
                     FR"
     gene            complement(2827..3897)
                     /locus_tag="VGD38_12140"
     CDS             complement(2827..3897)
                     /locus_tag="VGD38_12140"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY0728815.1"
                     /translation="MSDTNHATAEGTARYVQRFAGRAARDHFRVREGLHLSSIGIGTY
                     LGNADEATDALYEAAVVRAVQLGVNVIDSAANYRFQRSERSIGAALKTLSTEHGFARD
                     ELVLCTKGGYLPFDGTPPWDVREYIEETFVKPGIANFDDFVGGSHCMTPAYLQSQLDQ
                     SLKNLGVSTVDVYYIHNPESQLGHVSEAEFYHRLQSAFERLEQNRSEGKLRYYGAATW
                     NGFRVAPNSPEYHSLDRMVELARQVAGANHGFRFIQLPINLAMAEGIDVAERAETLGV
                     TAVASASLLQSRLAWKLPDHIRTALGSLATDAQTAIQFVRSAPGIATALVGMSHVEHV
                     EENLALVQVEPAGNEAFAQLFQ"
     gene            3957..>4784
                     /locus_tag="VGD38_12145"
     CDS             3957..>4784
                     /locus_tag="VGD38_12145"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HEY0728816.1"
                     /translation="MSLDITNDALDEISSQAAKLVSEYFAHIAERPVIAPNHAGKTKS
                     LVNVELPLEGRPLDELLDECRTVMDLSRHNGHPRFFGYVASPSTPVGAYADLIASALN
                     ANITCWRSGPAGTEIEQLVVRWLGSLIGYDDDAKGLLTSGGSMANMIALLIASRRFNA
                     ADVSRKGLWNAGPPMTIYASEEVHMSIPKAADVLGFGRENVRTIACDAGHRMRVDSLR
                     GTIRQDQLDGFRPICVVASAGTVNTGAIDPLDQIADVARDNDIWFHVDGAYGAPGAMD
                     "
BASE COUNT          983 a         1362 c         1414 g         1025 t
ORIGIN      
        1 cggaaacagt ccaccttcgt cgagcgccaa cgcgcgtgca gcgttgtcca cgggttcgag
       61 gatttcgatc tcttcgccgg cgagcgcgcc gcgcgctttg aaacgccgcg cggtcacgag
      121 cacgcgcgtt tcgagcgaac cgactccttt gttatagaac tcgagcgcgc gatcgaggct
      181 ccgaccgacc tcgtcaaagt gcttggtgaa gatgcggatt cgctcgtaca gcgtcttcgc
      241 caggttgctg acttcctgcg cgttcttggc catctgctcc tggctccagc cgtaggaaat
      301 ggctttgagg agcgcgatca gcgtggtcgg ggtggcgatg atcacgtttt gcgcgacgcc
      361 gtcttcgatc agcttcggat cgttttcgag cgcggcgtta taaaaggtct cgcccggcag
      421 aaacagcaac acaaactccg gcgtcggctg cactgtttcc caataagctt tgcggctgag
      481 attgttgatg tgcgttctga ccagccgcgc gtgatctttt aaccggctcg cgcgcacttc
      541 ctcatcagtt gccgcgatcg actcgtaaaa cgcatcgaag ggcacttttg aatcgacgac
      601 gatcgtgcgc ttgcccggca agtgaacgat caggtccgga cgaatgcgga cgtcttcgcc
      661 attcacggtt tcctgttcga tgaagtcgca atattgcaac atgcccgcga gctcgaccac
      721 gcgccgcaac tgaatctcgc cccaacgccc gcgcacgtgc ggcgcgcgca acgccttcac
      781 caaattcccc gtttccgact gaagctgcaa atgcgactgg gccagcacct tcacctgctc
      841 gcgcaactcc gaatacgcgc ccgcgcgtgt cttttccagt tcgccgatac ggccgtcgac
      901 tttctcgagc gactctttga gcggcttgat cagttcgttg atcgcacgct ggcggccatc
      961 cagatcgcct tttgcgtttt gctgaaacgt ttcgaggttc tgtttcgcga gatcgagaaa
     1021 cgaacggttg ttgttgcgca aggcatccgc cgaaagcgct ttgaacgcgt cggtgagttt
     1081 ttcttcagcc gtgctgagca gtgcgagttt ttctgcactg gccctgcgct cgtcttcgag
     1141 acgtgtttgc agcgcgagca ggttcgcgag gttcgcagcg ttctcgccgc gcagccgttc
     1201 gctttcgtct ttttcgcgat cgagagcttg ttgcagatcg agcagttggc cctctttacc
     1261 cgagagacgc tcgatcaacg tggcccgctc ggtgtcgcct tcagcgcggc cgcgttcgaa
     1321 ttcgtaacga agttttgtcc ggcttaaaag ccagagggag aaagcgccga cgacaaagcc
     1381 gagggccaac atcgacgcgg ggagtaaaac ttccatgcgg cggattctag catcattaac
     1441 cacaaaatag agctacaaaa aggcaagtga ggcacaagat atggctatct tccgaaactc
     1501 gccacgatcc gctcgtaaat cttgcgcgtc acgcgcacgt cgctgaggtt gtaatcacga
     1561 atgctatcca gcttgcccgc ctggtagaga tcgaacactt tgcttccttc gacttccgag
     1621 gtcttgctgg actcgatgcc caaggcccac gcgatgtcgt cgaggctgac gttgcgccgc
     1681 gcgccgagcc accagcgatg catcgtgtcg aacacgccgc gcacgttgta atcggagagg
     1741 ttcacaaaag ggcgcacctg aatctcgtgc accagacaac gctgaaagat aaaaggcaag
     1801 tcgaagccga tgatgttgtg accgacgagc tcgtcgcact cgcaatcgaa atctttcagt
     1861 agcgcgagaa agtcgagtag cgcgcgtttt tccggttgct cgaaaccatc gcgatcgatg
     1921 ccgaagacgt gttcgctctc caccggacca agaccgggaa actcgagccc cggaatcggt
     1981 ccgacgtgaa ccgcgatcga tagcacacgt ccggaagtcg cgcttaatga accgagcgcg
     2041 tagcaacgct cttcttcagc ggcgatgtct tcgagatagc gctgctgttg ttcgacgcgc
     2101 atgttgccga gacgcatctg gcgttcgagc tgcggcccga cgcgttcgcg aaagtcaggc
     2161 agtgtgagtg tttcaatgtc gaaggtgaac gcgcgtggaa gctgcggctc ggcgtgttga
     2221 tgttcgcggt atttttctat ggttgtcgcc cggtattcag caacaacgaa ctgaacttta
     2281 tcctggaagc tttctagttt cccgcggacg gcccacaaac ccggcgtcgg tggtgtttgg
     2341 gttttcgcta cctcttccca aatccggaga aagatcgagc ccgtagcgtt gcgggcagaa
     2401 acatcatagt agagccggcc ttgttgggta cggcgctcgc gaacggaagt cacaagcagg
     2461 attagccata gctcctcacc gtgagggagt tcaggaatag gaatattagc tctcactatc
     2521 taaaccaccc cattttgccg gtcagcatga ggccgatcat tttgtaatcg cccatcaacg
     2581 accagagcgg gtatttgaaa gtcgcgggcc ggttcttttc gatcaggaag tgtgcgagcc
     2641 acgcgaaggc gtagccggga ataaaaccga gcaggaacaa ccaccagcgt ccggtcgcga
     2701 tgaagtagac gacgagcgcc atgccgacgg ccgtgccgat caggtgcagc acacgcgtgc
     2761 ccgggtggct gtgttcggcc acgtaaaacg gccagaactc agaaaacgac tggtagcgtt
     2821 cttcgctcat tgaaacagtt gcgcaaaggc ttcattgcct gccggttcga cctggaccag
     2881 tgcgaggttt tcttcaacgt gttcgacgtg actcatcccg acgagtgcgg tcgcgatgcc
     2941 gggcgctgaa cgcacaaact gaatcgctgt ttgcgcgtca gtggcgagcg agccgagcgc
     3001 ggtgcggatg tggtccggca gtttccacgc caggcgcgat tgcaacagcg aagcactcgc
     3061 gaccgcggtc acgcccaatg tttccgcgcg ttcggcaacg tcgatccctt cggccatcgc
     3121 gaggtttatc gggagttgaa taaaacgaaa gccgtgattc gcgcccgcaa cctgacgcgc
     3181 gagctcaacc attcgatcga gcgaatgata ctcgggcgag ttaggcgcaa ctcgaaaacc
     3241 gttccacgtc gcggcgccat agtatcgcag cttgccttcg ctgcggttct gttcgagacg
     3301 ttcaaacgcg ctctgcagac gatgataaaa ctccgcttcg gaaacgtggc ccaactgcga
     3361 ctcagggtta tgaatgtaat agacgtccac tgttgagacg ccgagatttt tcagggattg
     3421 atcgagttga ctttgcaggt acgcgggcgt catacagtga ctgccgccga cgaagtcgtc
     3481 gaagttagcg atgccgggtt tgacgaaagt ctcttcgatg tactcgcgta cgtcccacgg
     3541 cggcgtgccg tcaaacggca ggtatccacc cttcgtgcag agcaccaatt catcgcgcgc
     3601 gaagccgtgt tcggtgctga gtgtcttgag cgcagcgcca atcgaacgtt cgcttctctg
     3661 aaaacgataa ttcgccgcgc tatcgatcac gttcacgccg agttgaaccg cgcgcacgac
     3721 cgcggcttcg taaagcgcgt cagtcgcctc atccgcattg ccgagatacg tgccgatgcc
     3781 gatcgacgac aggtgcaaac cttcacggac gcgaaaatga tcgcgcgcgg cgcggccggc
     3841 gaagcgctga acgtagcgtg cggtgccttc ggctgtggcg tgatttgtgt ctgacattta
     3901 cgcggatggt agcacggctt tgtaatcgac acttagtagt tgttaacttg tcaggcatgt
     3961 cgctggacat cactaacgac gccctcgacg agatctcgtc gcaagcggcg aagctcgtct
     4021 ccgaatactt cgcgcacatc gcggagcgtc cggtgatcgc gccgaatcac gcgggcaaaa
     4081 caaaatcgct cgtaaacgtc gagcttccgc ttgaaggcag gccgcttgat gaactgctgg
     4141 atgagtgtcg cacggtgatg gatctgagcc ggcacaacgg acatccgcgt ttcttcggtt
     4201 acgtcgcttc gccttcgacg cccgtcggcg cgtacgccga tctgatcgcc tcggcgttga
     4261 atgcgaatat cacctgttgg cgttcgggac cagccgggac ggagatcgag caactggtcg
     4321 tgcgctggtt gggatcgttg attggttatg acgacgacgc gaaaggtctg ctgacgagtg
     4381 gcggctcgat ggcaaacatg atcgcgctcc tgattgcgag ccgtcgcttc aacgcggcgg
     4441 acgtgtcacg gaagggactt tggaatgctg ggccaccgat gacgatctac gcttcggaag
     4501 aagtacacat gtcgatcccg aaagcagcgg atgttttagg gtttgggcgt gagaacgtgc
     4561 ggacgatcgc ctgtgacgcc gggcatcgca tgcgcgtgga ctcactccgg ggaacgataa
     4621 gacaagacca acttgacggg tttagaccca tttgcgtagt cgcaagtgcc gggaccgtga
     4681 atacaggagc gatcgatccg ttagatcaaa ttgccgacgt cgcgcgggac aatgacatct
     4741 ggtttcatgt tgatggcgct tacggcgcgc cgggggcgat ggac
//
LOCUS       DASWTX010000804         7207 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_182986, whole genome shotgun sequence.
ACCESSION   DASWTX010000804 DASWTX010000000
VERSION     DASWTX010000804.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7207
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182986"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..699)
                     /locus_tag="VGD38_12150"
     CDS             complement(<1..699)
                     /locus_tag="VGD38_12150"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY0728817.1"
                     /translation="MSDDGNDSFLQAPVAEKCLAALAAEGGAEDAGKVPPPLPPASDL
                     IGREIGGRYRIVSSLRPGGFGEVYKAIDTKLHSRFVVIKILQRHLLSDDPARRDWIVR
                     KFKQEIEALAKIKHPGVVGIFDTDILDGRPYIVMEFIEGMDLREFIKTQCAFEQGIGL
                     SQVAEIVKQVGRTLTASHDSGIIHRDLKPENIMVRQSADGDLQVKVIDFGIAKIRNSL
                     IASSTTSGHVAGTWP"
     gene            complement(720..3626)
                     /locus_tag="VGD38_12155"
     CDS             complement(720..3626)
                     /locus_tag="VGD38_12155"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HEY0728818.1"
                     /translation="MKSIQNAFALRRIFSTAQVLMFLWLSVAPALGHQTQADPETQTE
                     IRDLPIGTPIERKLEKPEMHAYGIELKQGEVVRVSIKEKGVDVNTVFIRAADESKASA
                     GSNSGSGFMRESLTLIAEQDGVYVLGLRVEPVTTPEVPATYELSATRSSQASGADLQR
                     VKAEMLVDEASRAIPSSNDRQSLVLASQKVAQAIPIWRGLGEEYWAGMTEVIVASGQV
                     KAGDFGSAEGALKNSLRIFESLQDEAAIANVSVILATVYLTMKDPERATPLLNRCLTI
                     SRKLGDKRIESLTNLIGSASLVGDLEKPIDKNYSEQISRTRAQRDQNAEAMVWANHVL
                     RNGLDDEALEEEERIALFARAEKEALPLVRALKARDLELHILVGLGLGFYEDEPEDPS
                     VNEKSLQYTCQAIVLAQIQNNRGMQAYAYLQLYMVYTGEKDPLAIFFGKKALDVMQGM
                     RDDLRLGDKESQQAAAKQLEDGFGDLITDFLSEGRHAEALQVINQSRDQEFYDFKIVF
                     DRAAKLTLSPREAESSRIMDETVNRAAAKYANVIGPEFAAAGSELRNLLPRLEQRFSG
                     PNEAATGVPDAVDLQSAMRELSALTRQKHVAIYVDTEIQNLILVTPEGVKGFTRRFTS
                     PAEWNDNPVPDFLRNLRSPKVDPRPDGARLYRKIFKQVELVNGNYTNNTLEAELARYR
                     PDVLHWSIGGNLRYVPMAALYDPEAKQYLVEKFQNVIFTRSRKERFLLPQRAWTQGVG
                     FGTSIAYQGFSALPGVVEELALIFGDEAKVQKGLLSGRVFLNTSFTRQTLLSVRSLKP
                     DVVHIASHFKFEPGDSRNSFVLLGDGSRVSLYDMQQVAVMFAGVDLITLSACETAAQQ
                     SDSTGREIDGFAELAQRLGANSVIATLWKISDGPTARLMTDFYRLRMENPGAPKSEIL
                     RRAQLNLLRGGLATQSTGTRPRTVRGTDEENATGAAKLDHPYYWAAFVLYGSSR"
     gene            complement(3720..4556)
                     /locus_tag="VGD38_12160"
     CDS             complement(3720..4556)
                     /locus_tag="VGD38_12160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728819.1"
                     /translation="MGEDLVTDASLRQFLLGRLDEEERQQIETLFITGSLSRERILLV
                     EQDLIEDYLEGSLTAADQKSFLAQYTATPTQRRRLRIARSIKERAAKEGSQTVPSTVS
                     VWRRCGEWLRPRFAFVVPIAATLIIAVVAAAIWLNSKIERRNKRLAIAEEVIRLNAPG
                     TMRDVPPGKLSSLELRRGAYRGFEAPPELVKTTSLEIVELQLLWEQEQFPSYRAVVQR
                     VGDDEPIPVIDRHAESDGKTILVKLPAHILTRGTYRVELTGIAADGTTSPPEEYQFTV
                     RG"
     gene            complement(4611..5201)
                     /locus_tag="VGD38_12165"
     CDS             complement(4611..5201)
                     /locus_tag="VGD38_12165"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0728820.1"
                     /translation="MARNSAIPPESFEEILAWLDPDREVAGAIYVQLCHDLAQIFTWN
                     RCSDPEGLTDEVFDRVSRKVHEVRKTYVGDPRLYFYGVARNLIKEIRNRAKEQVPLED
                     TEVVGANPTIETGEEIAEMRENCLNSCLELLGQEKRELILNYYARDKQAKIEHRTKLA
                     QQLGISVQTLRVRVHRIRLALEQCIERCLARMDQGK"
     gene            complement(5210..>7207)
                     /locus_tag="VGD38_12170"
     CDS             complement(5210..>7207)
                     /locus_tag="VGD38_12170"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HEY0728821.1"
                     /translation="LLLKLEQKQRALDVYSQALPFSQKVGDKGLLLTTLYNLARANFE
                     LGSLDVALSWIQESLKMIEDVRTNVASPEFRASYFSGAKKHYELCIAILMQLDRTRPG
                     EGFAAEAFLVSENSRARLLLDLLSESQAGLRHGASAELLKRERELRGSVGRLAQYELD
                     LSFKKKDSGELREVGKELAELRAEYQAVQAQLRERRSDEAPLDRFEPVDLQRIQAELR
                     DNDALLLQYSLGEKRSYLWAVTADSFTVFELPPRKEIEEAAIEVYKLLTARQESEKQS
                     NKDFHAKVEAADRLYYEKAPHLSEMLLGPVAQQLGNRKVLVVAEGALHYIPFGALPVP
                     GTQARGPQDRPLLIETNEINRSPSISALIAIRAEKKQPRSTDKVVAVVADPVFNRNDE
                     RVQSEGSSSTITSAASNQPENASVAQAQVLRDLGGADGPPRLLHSSEEADAISAAAPR
                     GTTMVAKGFEATREMAMSQRIGEYQIVHFATHGFFYNKHPELSGIVMTMVDRAGTEKN
                     GVMPLHDIYSLDLSAELTVLSACQTGLGRDVSGEGLVGLTHSFMSAGSNTVVASLWKV
                     DDRATANLMAEFYRAMLQEGMPTGAALRAAKLKMMQDKRWHAPYFWAGFVLQGEYTNQ
                     IVVDRSSRFSIRTVLLLLVPIFAGSLIFYWLRRRLVRARRM"
BASE COUNT         1539 a         2108 c         1837 g         1723 t
ORIGIN      
        1 gggccaggtt ccggcgacgt gtccgctggt tgtactcgac gcgataagcg agttcctgat
       61 cttcgcgatt ccaaaatcta ttaccttgac ttgtaaatcg ccgtccgcgc tttgacgcac
      121 cattatgttc tcaggtttca gatcgcgatg aatgattcct gagtcgtgcg acgcggttaa
      181 ggtccggccc acttgcttca cgatctccgc cacctgcgaa agtccgattc cctgctcgaa
      241 ggcgcactgc gttttgatga actctcgcag atccatgccc tcgataaact ccataacgat
      301 gtacgggcgg ccatcaagaa tatcggtgtc aaagattccc actacgccgg gatgtttaat
      361 cttggcgaga gcttctatct cttgtttgaa cttgcgcacg atccagtcgc gtcgtgccgg
      421 atcgtcgctc aacaaatgcc tctgtaagat ctttatgacg acaaagcgcg agtgcagctt
      481 ggtatcaatc gctttataga cctcgccaaa gccaccgggc cgcaagctgc tgacgatccg
      541 gtaacggccg ccaatctctc ttccgatcag atccgaagcg ggaggcaacg gcggtggaac
      601 tttaccggcg tcttcagcgc cgccttcagc agcgagcgca gccagacact tttcggccac
      661 cggcgcttgc agaaaagaat cgttaccgtc gtccgacata atctcttcct aatcaggttt
      721 cagcgcgaac tgccgtacaa aacaaaagcg gcccagtagt acggatgatc gagcttcgcc
      781 gctccggtgg cgttctcttc atccgtgcct ctgaccgtgc gcggccgtgt tccagttgac
      841 tgggtagcga gaccaccgcg cagcaggttc agttgggcgc gtcgcaagat ctccgacttc
      901 ggagcgccgg ggttttccat gcgcaaacgg tagaagtccg tcatgagtct cgcggttgga
      961 ccatctgaga tcttccacag agtggcgatc acggaatttg ccccgagtcg ttgggccagt
     1021 tcggcgaacc cgtcaatttc cctgcctgtc gaatctgatt gctgcgctgc tgtttcgcac
     1081 gcggacagag tgatgaggtc cactcccgca aacatcacgg cgacttgctg catgtcatat
     1141 agcgagaccc tgctgccgtc gccaaggagc acaaacgagt tgcgtgagtc gcctggctca
     1201 aacttgaagt gactcgcgat gtgtaccaca tctggcttta gcgaccggac cgaaagcagc
     1261 gtctgacgtg taaacgacgt gttgagaaac acccggccgc tcagaagccc cttttgcact
     1321 ttcgcctcat cgccaaagat cagcgccagc tcctcgacaa cgcctggcaa ggccgaaaaa
     1381 ccctggtaag cgatcgaggt gccgaagccg actccctgcg tccacgctct ctggggcaac
     1441 aggaaccgtt ccttgcgcga gcgtgtaaag atcacgttct gaaacttctc tacgaggtac
     1501 tgtttggctt cgggatcgta aagcgcggcc atcggcacgt aacgaagatt accgcctatg
     1561 gaccagtgca gaacgtcagg tcgatatcgc gcgagttccg cttcgagcgt gttgttggtg
     1621 tagtttccgt taaccagctc aacttgtttg aagatcttgc gataaagccg cgctccatcc
     1681 gggcgcggat cgacttttgg tgagcgcagg ttacgcagga aatccggtac cggattgtcg
     1741 ttccactccg ccggtgaggt gaatctgcgg gtgaagccct taacaccttc cggagtaacg
     1801 aggatcagat tctggatctc ggtatcgacg taaattgcca cgtgcttttg gcgcgtgagt
     1861 gccgaaagct cgcgcatagc cgattgcaga tcgactgcgt caggaacacc ggtcgccgct
     1921 tcattcggac ctgagaatct ctgttccaac cggggaagca ggttccttaa ctcacttccc
     1981 gccgctgcga actccggtcc tataacattg gcatattttg ccgccgcgcg attgacggtc
     2041 tcgtccataa tcctcgagct ttcagcctcg cgtggactca gcgtcaactt tgcggcccgg
     2101 tcgaaaacta ttttgaaatc atagaactcc tggtcgcgac tctgattgat tacttgtaat
     2161 gcttcagcgt ggcggccctc gctgagaaaa tcagtaatca gatcgccgaa gccatcttcc
     2221 agttgtttag ccgctgcctg ttgcgactct ttatcgccga gtcgtagatc gtctcgcatg
     2281 ccttgcatga catcgagagc cttcttgccg aaaaagattg ccaggggatc tttttcgccc
     2341 gtatagacca tgtaaagctg caagtatgcg taagcctgca tgccgcgatt attttgaatc
     2401 tgcgctaaca caatggcctg acacgtgtat tgcaacgact tttcattgac gcttgggtct
     2461 tcaggctcgt cctcatagaa acccaaaccc aaaccgacca gtatgtgcaa ttcgagatct
     2521 cgtgccttta aagctctcac caggggtaaa gcttcctttt cggcgcgggc gaatagagcg
     2581 atccgttctt cttcctcgag ggcttcatcg tcgagaccat tgcgcagcac gtggttggcc
     2641 caaaccatgg cctctgcgtt ctggtctctc tgcgctcgag tacgagagat ctgttcggag
     2701 tagtttttat cgatgggttt ttccagatct cccacgaggc tcgcactgcc tatcaggtta
     2761 gttaaactct cgatgcgttt gtcgccgagc tttcgcgaaa tggtgagaca gcgattaagc
     2821 agtggtgtgg cccgttccgg atctttcatg gtcaggtata cagttgccaa gatcaccgaa
     2881 acattcgcta tcgccgcttc gtcctgtaag ctctcaaaga tccggaggga gtttttcaat
     2941 gcaccttcag cgctgccaaa atctccggcc ttaacctgac ccgaagcgac tatgacctca
     3001 gtcataccgg cccaatactc ttcgcccaaa ccgcgccaga tcgggatcgc ctgagctact
     3061 ttctgtgacg ccaatacaag actctgccga tcgttgctgc ttggaatcgc ccggcttgct
     3121 tcgtcgacca acatttccgc cttcacacgt tgaagatccg ctccgctcgc ctggctcgat
     3181 ctcgtcgccg acagttcata ggtggcaggc acttccggag tggtaaccgg ttccacgcgg
     3241 agccctaaga cgtacacacc gtcctgctcg gcaatcaacg tcagcgattc gcgcatgaag
     3301 ccggagccgc tgttacttcc cgctgatgcc ttgctttcat cagccgcacg aataaatacg
     3361 gtatttacgt caactccctt ctccttgata ctcacccgca ctacttcacc ctgtttcagc
     3421 tcaatgccgt aggcatgcat ttccggcttc tcgagtttgc gctcgattgg cgtaccgatc
     3481 ggcaagtctc ggatttcggt ttgagtttcc ggatcggctt gggtttggtg gcccaaagcc
     3541 ggcgcgacgc tgagccacag gaacatcagc acctgagccg tgctgaaaat tcttcttaaa
     3601 gcgaacgcat tctgtataga cttcattttc gtagttgacc caaaactccc cacattctat
     3661 ggaggtcgcc cgcgaaacat taccaggagt gaaaatgagg accgcggcta tcggagggat
     3721 tagccgcgca cggtgaattg gtattcttcg ggtggactgg tcgtgccatc ggcggcgatg
     3781 ccggttaact ctacgcgata ggtgccgcgc gtgaggatat gggcgggaag ttttaccagg
     3841 atcgtttttc catcgctttc cgcgtgacgg tcaatcacag ggatcggctc gtcatcaccg
     3901 acgcgctgca ccacggcacg gtagctcgga aactgttcct gctcccaaag aagttgtagc
     3961 tcgacaatct cgagcgacgt agtcttaact agctccggcg gcgcttcgaa acctctatac
     4021 gctccccgcc gcaattccaa tgatgacaat ttcccaggcg ggacgtcgcg catggtcccg
     4081 ggagcattga gccgaatcac ttcctcggca attgccaacc gcttattgcg acgttcaatt
     4141 ttgctgttca accaaatagc cgcagccaca accgcgatta tgagtgtcgc cgcgatcggc
     4201 acaacgaagg caaaccgcgg ccgcaaccac tcgccgcaac ggcgccacac ggaaaccgtt
     4261 gacggaacag tttgagaccc ttccttcgca gccctttctt ttatcgacct ggcgattcgt
     4321 aatctgcggc gctgcgtggg agtcgccgtg tattgtgcaa gaaaactttt ctggtctgcc
     4381 gctgtcagag agccttctaa atagtcttct atcagatcct gctctacgag gagaatacgt
     4441 tctctcgaaa gagagcccgt gataaataac gtttcgatct gctgccgctc ttcctcgtcg
     4501 agccgtccta atagaaactg gcgcaatgac gcgtcagtaa ctaaatcttc ccccatgggt
     4561 catcctccag acgtcccatc tattcacaat ggaatttccc gcaatccgtt tcattttccc
     4621 tggtccatgc gcgcgaggca gcgttcgatg cactgctcga gcgcaagacg aattcgatga
     4681 actctcactc tcagagtctg gacagaaatc cccaactgct gagcgagctt cgttcgatgc
     4741 tcgatcttag cctgcttgtc cctggcgtaa tagttcagga tcaactcccg tttttcctga
     4801 ccaagcaatt ctaaacagga gttgagacag ttttcccgca tctcggctat ttcttcgccg
     4861 gtctcaattg ttggattcgc gccgacaact tcagtgtcct ctaaaggtac ctgctccttc
     4921 gccctgtttc gtatttcctt gatgagattt cgcgccaccc cgtaaaagta aagtcgcgga
     4981 tcgccgacgt aagtcttccg cacttcgtgt accttacggg acacacggtc gaagacttcg
     5041 tcggtcaaac cttccgggtc gctacagcgg ttccaggtga agatctgggc gagatcgtgg
     5101 caaagttgga cgtagatcgc gccggccacc tcacgatcag gatcgagcca ggcaaggatc
     5161 tcctcgaaac tttccggtgg gattgccgaa tttcgcgcca tttatgcgtt cacatccgtc
     5221 gtgcccttac taaccggcgt ctaagccagt aaaaaatcaa cgagccggca aaaatcggca
     5281 caagcaacaa aagcactgtg cgaatgctaa accgcgagct tcggtccaca acgatttggt
     5341 tcgtgtactc gccctgcaac acgaagccgg cccagaagta cggtgcatgc caacgtttat
     5401 cctgcatcat cttcagcttg gccgctcgca gtgctgcgcc cgtaggcatg ccctcttgca
     5461 acatcgcacg atagaactca gccatcagat tcgcagtcgc gcgatcgtcg accttccaca
     5521 gactcgcaac cacggtgttc gagccggctg acataaagct gtgcgtcaga cctaccagtc
     5581 cctctccgct gacgtctcta cccaacccgg tctgacacgc gctcagcact gtcagctcag
     5641 cggaaagatc caaactgtag atgtcgtgaa ggggcatgac gccattcttt tccgtcccgg
     5701 cccggtccac catagtcata actatgcctg acaactccgg atgcttgtta taaaagaaac
     5761 catgcgtggc gaaatggact atctgatact caccaatgcg ctggctcatt gccatttcac
     5821 gcgtggcctc gaaacctttg gccaccatgg ttgttccgcg cggcgcggct gctgaaatgg
     5881 cgtccgcttc ttccgaggaa tgaagcaaac gtggtggccc atcagcgccg ccaagatctc
     5941 tgaggacctg tgcctgggcc acggaggcat tctcaggttg attggacgcc gcactcgtga
     6001 tggttgatga cgatccctca ctttgaacgc gctcgtcgtt tcggttgaaa accggatcgg
     6061 caacgactgc gaccactttg tcagttgagc gaggctgttt tttttctgct cgaatagcga
     6121 tcagtgcaga gatagaaggc gaacgattga tttcattggt ttcgatcaac aaaggacggt
     6181 cttgtggacc acgggcctgt gtgccgggca cgggcagtgc gccgaaggga atgtagtgaa
     6241 gcgctccttc agcaaccacg agcacttttc tgttgccgag ttgttgagcg actggaccga
     6301 gcagcatttc gctcagatgg ggggcttttt cgtaatagag ccgatcggct gcttcgacct
     6361 ttgcgtgaaa atccttgtta ctctgttttt cagattcctg cctggcggtc agcagcttgt
     6421 aaacctcgat cgccgcctcc tcgatttcct tccgcggcgg caactcaaaa acggtgaacg
     6481 aatctgccgt aaccgcccac aagtaactac gcttttctcc cagtgaatac tgcagtagta
     6541 acgcgtcgtt atcgcgcaac tcagcctgga tgcgttgcag atccacaggc tcaaaccggt
     6601 cgagcggcgc ttcatcagac cggcgctccc gcaactgcgc ctgcactgcc tggtattcag
     6661 ctctcagctc tgcaagctct ttgccgactt ccctcagctc gcctgaatct ttcttcttga
     6721 atgaaagatc aagctcatat tgcgccagtc tccccacaga acctctcaat tcacgttcac
     6781 gtttgagcag ttccgcactc gcgccatgac gcagaccggc ttgcgactca ctgagcaaat
     6841 cgagaagcag ccgagcacgg ctgttttcgc tcaccaaaaa cgcttcagca gcaaagcctt
     6901 ctccgggccg tgtgcgatcg agttgcatca agatcgcgat gcacagctcg tagtgctttt
     6961 tagctcccga aaaatacgaa gcacggaatt ccggactcgc gacgttcgtc cgcacgtcct
     7021 cgatcatctt taacgactct tgaatccatg acagggcaac gtcgagcgaa ccgagttcga
     7081 agttggcccg cgcgaggttg tagagcgtag tcaatagcag acctttgtcg ccgacttttt
     7141 ggctgaaggg aagtgcctgg ctgtaaacat caagggcgcg ctgcttctgt tccagtttca
     7201 gaagaag
//
LOCUS       DASWTX010000805         3748 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_227250, whole genome shotgun sequence.
ACCESSION   DASWTX010000805 DASWTX010000000
VERSION     DASWTX010000805.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3748
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227250"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2014)
                     /locus_tag="VGD38_12175"
     CDS             complement(<1..2014)
                     /locus_tag="VGD38_12175"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728822.1"
                     /translation="MHLSLARGLLIILLLSLNIYAQTPPAATISEFDDLANTLVTLKS
                     AEEREELLSKNRALMTPDLRKALIRHGNSQLLAGRYSTAFDIYGVAQNVAEQIGDKEG
                     VATAWLDIGTVYYFQANYPAALEHYKKARDLFTEVTNHYESAKALSGVALIYKEQRRE
                     TEALATLQQVLREFTSLGDMEETANTLNMIGTIYYGQGNYSAAADAFRKSSETNRNVD
                     SIVRLADVLYMQGDYSQALTFYKQSLERVNRTDIGVIVASLNGAANSAYYSGNYDEAL
                     ANYQRSAEIQKTEPDKVGLITALRGVGNVHRVRGDYGAALESYFSALSLTEQIKAPLG
                     NTLGSIGLVRALQGDYPRALEYYGKALKEFKTDSNKIEMARVLTLIGNVYYRQGQYDS
                     ALLSYRQALTVREEMDDKSAQGDIVAGIGSTLLRQKNYSEALDNFQKALGLFKTVNNQ
                     EKVADVLTRVSEALLLQNDYARALSAAESAVTIATQTGNSEILWFARMLTGKAHARLE
                     QEAQAYNAFTGAISTVESLREESSGAGIGDHSRSLAYLSAIDFLIDQRRSSEAFHYAE
                     RAKIQFLIDLLKNNNAVPYKGLSPEQRREVQRLAGEIASLEIQLARERDQRFQSEARR
                     LELRNKLQKTRADYAAFRQKSFAANPGLKISRGELTPLKLEDVSSLI"
     gene            complement(2171..>3748)
                     /locus_tag="VGD38_12180"
     CDS             complement(2171..>3748)
                     /locus_tag="VGD38_12180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728823.1"
                     /translation="FFLVRRTVLDRLGVYDVLRDEVMEDVRLAEMIKRSGARSSIHHA
                     PGLLRTRMYSTFAEMWECSSKNWFSGMNFSLPLALSSVASMYLGAVAPPIVALVLAVA
                     LAAGASADLWLLFIPAALSWLFQVRVMASVSRRSEVSPLYALTAPLGVAVMYAMLFDS
                     TMRITTGRGVTWKGRRIYERHGVRPPRVHTTLMLAFLFLATTLVGPLVNGQKPTREEA
                     LKEAGRMVMEAERKVGEVRKSGDRKLIVEAERGVAEALVKATEVWREAGNNDTRLIAA
                     VEELTRLYSVHGDYDKVVERLNLEANYWLERSNPRQQLQTLFVLGIRQSQMKRDAASI
                     ETLQRVIEMSRATGFFSLERNALEQLANVYHKQGRAKDAEEARARAKELWAIKEPAPA
                     TKPFKSAPATIPAQWVDLPLAPLAAEYRNVEGVNQAVLVNRTTKGIQTVVIGCVLLEE
                     NNKTRVLHALTGTTWSHGSVTPGLYYEPFATLNGPASRWSDDKMSCEGAAKMAVTEVI
                     FDDRSGWKADGTDWVVR"
BASE COUNT          783 a         1140 c          980 g          845 t
ORIGIN      
        1 gtatcaacga actgacgtct tcgagtttga gcggcgtgag ctcgccacgg ctgatcttca
       61 aaccgggatt tgccgcgaac gatttctgcc gaaaagcagc ataatccgcg cgagtctttt
      121 gtaatttatt ccgcaactcc aagcgacgcg cttcactctg aaaacgttga tctctttcgc
      181 gcgccagttg aatttcgagc gacgcgatct caccagccag ccgttgcacc tcccgccgct
      241 gttcaggcga aagtcctttg taaggaacgg cgttgttgtt cttcaacaga tcgatcagga
      301 actgtatctt cgcgcgttcc gcgtaatgga aagcctcact cgaccggcgc tgatcgatca
      361 aaaaatcgat tgccgacaga tacgcgagcg accggctgtg atcgccgatt ccggcgcccg
      421 aagattcctc tctcaacgac tcgactgtcg agatagcgcc ggtgaacgcg ttgtacgcct
      481 gtgcttcctg ttccaatctc gcatgggcct tgcccgtcaa catccgtgcg aaccagagga
      541 tctcactgtt tccggtctgc gtcgcgatcg tcaccgcgct ctcagccgcg ctcagcgccc
      601 gtgcgtaatc gttctggagc aagagcgctt cagacactcg cgtcaaaacg tccgccactt
      661 tttcctgatt gttaaccgtc ttgaacaacc caagcgcctt ctggaaattg tcgagcgctt
      721 cggagtaatt cttctggcgc aggagtgtcg aaccgatccc cgcgacgatg tcgccctgcg
      781 ctgacttgtc gtccatctct tcacgcaccg tgagcgcttg ccggtacgaa aggagcgcgg
      841 agtcgtactg gccctgcctg tagtaaacat ttccgatgag cgtcagaacg cgggccatct
      901 cgatcttgtt ggaatcggtt ttaaactctt tcagcgcctt gccgtagtac tcgagcgcgc
      961 gcgggtaatc tccctgcagc gctctcacca ggccgatgct tcccagcgta ttaccgagcg
     1021 gggctttgat ctgttccgtg aggctaagcg cgctgaaata gctctcgagt gcagcgccgt
     1081 aatcaccacg aacccggtgc acgtttccga cgccgcggag cgcggtgatg agtccgactt
     1141 tgtcaggctc cgtcttttga atctcggcgc ttcgctggta gttcgcgagc gcttcgtcgt
     1201 aattgcctga atagtaagcc gagtttgccg cgccattcag cgaggcgacg atcaccccga
     1261 tgtctgttct gttaacgcgc tcgagagact gtttgtagaa cgtcagcgct tgcgagtagt
     1321 cgccttgcat gtacaggacg tcagccaggc gcacgatgga atcgacgtta cggttcgttt
     1381 cactactctt ccggaaagcg tcggcggccg ctgaatagtt tccctggcca tagtaaatcg
     1441 tgccgatcat gttcagcgtg ttcgcggtct cttccatatc gccgagcgac gtaaactccc
     1501 gcaacacctg ttgcagggtc gcgagtgcct ctgtttcacg acgctgctct ttgtaaatca
     1561 gcgcgacacc ggagagcgct ttcgcggact cataatggtt cgtgacctcc gtgaagaggt
     1621 cgcgcgcttt cttgtagtgc tccaacgctg ccggataatt cgcttgaaag taatagacag
     1681 tgccgatgtc gagccacgcg gtcgcgacgc cttccttatc gccgatctgc tcggcgacgt
     1741 tttgcgcgac gccatagatg tcgaaggcag tcgaatagcg tccggcgagc aattgagagt
     1801 tgccgtgccg gatcagggct ttgcgcagat cgggcgtcat caaagcgcgg tttttggaca
     1861 gcagttcctc gcgctcttcc gcagacttga gcgtcacgag cgtatttgcg aggtcgtcaa
     1921 actccgatat tgtggctgcg ggaggagtct gggcgtagat attcaggctg aggagaagga
     1981 taataaggag cccacgggcc agagataaat gcattgataa catccgggtc attattactt
     2041 acgctggtgc gaataccaaa acaaaccttt ccgaacactt tgacgtacca ggtcccggag
     2101 aatcgcacat gtactgccag tacgacgcgc tcattcgagc cgcttgaaga gaagcgcttg
     2161 cgctcacatt tcagcgaact acccaatcgg tgccatccgc tttccagcct gaacgatcgt
     2221 cgaatatgac ttctgtcact gccatcttag ccgcgccttc gcagctcatc ttatcgtcgg
     2281 accagcggct cgcgggaccg ttcaacgtgg cgaaaggctc gtagtaaagt cccggtgtca
     2341 cactcccgtg actccaggtc gttcccgtca gcgcatgcag cacacgtgtc ttgttgttct
     2401 cctcgagcaa cacgcaaccg atcacaacgg tctggattcc tttcgtggtc ctgttcacaa
     2461 gcaccgcctg attaaccccc tcgacgttgc gatactcagc agccagcggc gctaaaggca
     2521 ggtcaaccca ttgggccgga attgttgccg gcgccgactt aaacggcttg gtcgctggtg
     2581 ccggttcttt tatggcccac aactctttgg ctctcgcgcg tgcttcttca gcatccttcg
     2641 cgcgcccttg cttgtggtaa acgttcgcga gttgttcgag cgcgttacgc tccaacgaaa
     2701 agaaacccgt tgcgcgactc atctcgatca cccgctgaag cgtttcgatc gaggccgcat
     2761 ctcttttcat ctgcgactgg cgaatgccca aaacaaataa cgtctgtagt tgttgtcgcg
     2821 ggttactgcg ctcgagccag taattagcct cgaggttcag gcgttcgacc actttgtcgt
     2881 agtcgccatg gaccgagtaa aggcgcgtga gttcctcgac cgcggcgatc agtcgtgtgt
     2941 cgttgttacc ggcctcgcgc cacacctcgg tcgctttaac gagagcttca gcaactccgc
     3001 gctcagcttc cacaatgagc ttgcggtcac cgcttttgcg aacctcgcct acctttcgct
     3061 cagcctccat gaccatacga ccggcttctt tcaatgcctc ttcgcgagta ggtttctggc
     3121 cgtttactaa tgggccaaca agagtcgtcg caagaaaaag aaacgccagc atcaacgtgg
     3181 tgtggactcg tggcggtcga acgccatgcc gctcgtaaat cctgcggccc ttccacgtca
     3241 cgcctcgtcc ggtggtaatc ctcatagtcg agtcgaacaa catagcatac atgaccgcca
     3301 cacccagcgg cgccgttaac gcgtaaagag gagacacctc ggaacgtctg cttacactcg
     3361 ccatgacccg cacctgaaac aaccacgaca acgccgccgg aatgaacaac aaccaaagat
     3421 ccgcgctcgc accggccgca agcgcgaccg ccaacacgag cgcaacgatc ggcggcgcaa
     3481 cagcgcccaa atacatcgaa gcgacactgg acaacgccaa tgggagtgaa aaattcatcc
     3541 ccgaaaacca gttcttggaa ctgcactccc acatctcagc aaacgtcgaa tacatccgcg
     3601 ttctcagcaa tccgggtgcg tgatggatcg acgaacgcgc gcccgaacgc ttgatcattt
     3661 ccgcgagccg cacgtcttcc atcacctcgt cccttaacac atcgtagacg ccgagacgat
     3721 cgagcaccgt tcgcctgacc aagaagaa
//
LOCUS       DASWTX010000806         2494 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_9524, whole genome shotgun sequence.
ACCESSION   DASWTX010000806 DASWTX010000000
VERSION     DASWTX010000806.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2494)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2494)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2494
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9524"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            112..1173
                     /locus_tag="VGD38_12185"
     CDS             112..1173
                     /locus_tag="VGD38_12185"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEY0728824.1"
                     /translation="MKEQIHQARWIAVLAATALALYLCWLMLRPFASVLAWAIVLVIV
                     FYPVHQRLKGRFKGPGLPALLSCVLVVLLAVIPLTVLTVAVAEQLAAAIPNLPSQIST
                     VMNPQTSVLGRVAEWIQGRFGVDPAQSQQFMADQLQRAGQFLVGVSFNLAGNIATGIV
                     KSFFVVFTMYYLFRDGDRIVSKLPAALPLERRQSEVIINRTREVVSASVYGIVVIASL
                     QGLLGGIAFWILGIPSPLLWAVLMGFVCMIPVLGSFLVWLPLAIYLGLTGHWTKAILL
                     ILWGALVISTIDNFLRPKWMKNQTRLHELLVFFSVLGGISVFGLLGIVLGPVILAITM
                     GLLHTFRVHHHGDEAVDEV"
     gene            1211..2269
                     /locus_tag="VGD38_12190"
     CDS             1211..2269
                     /locus_tag="VGD38_12190"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEY0728825.1"
                     /translation="MREAIEFLSDEQFGTEPVTNNERAANNTTDDELLDAYSRAVISA
                     AEKVSPSVVYIEVQQPINNRRGDPRMPREARGSGSGFIFTPDGFILTNSHVVHGASKI
                     EVTVTDGSKYQADLIGDDPDTDLAVIRINAPNLVPAHLGESQQVRVGQLVLAIGNPYG
                     FQYSVTAGVVSALGRSLRAGSGRLMDAVIQTDAALNPGNSGGPLVNSRGEVIGVNTAM
                     ILPAQGICFATSIDTAKFVASRLIRDGKVSRSYVGLAGQNVPLPRRIVRFYNLAVESG
                     ILVVSFEENSPARKAGLREGDIIIGFDDRPIAGIDDLHKLLDEERIGHKSKLVIVRGT
                     QKLDLEVVPEESIRRSRE"
BASE COUNT          511 a          680 c          768 g          535 t
ORIGIN      
        1 tttcgaaggt ttgcaggagt gacgccgcga acatttcgga aacagattta gaaggaaaat
       61 ggtccaagcg gccttcacta aatccgcgcc agttcgttag gatggcgcta cgtgaaggaa
      121 cagatacatc aagcccgttg gatagccgtc ctggcagcga ctgcgctcgc gctttatttg
      181 tgctggttga tgctacggcc gttcgcgagt gtcctggcgt gggcgatcgt gctggtgatc
      241 gtcttttatc ccgttcacca gcggttgaag ggtcgattca aaggcccggg tctaccggcg
      301 ttgctctcgt gtgtgctggt ggtgctgctc gcggttatcc cgttgacggt gctcacggtc
      361 gcagttgccg aacagctggc ggccgcgatt ccaaacctgc cctcacaaat ctccactgtg
      421 atgaatccgc aaacgtccgt gctcggcagg gtggctgaat ggattcaggg acgtttcggt
      481 gtcgacccgg cgcagtcgca gcagttcatg gcggatcagc tccagcgtgc cggccaattc
      541 ctggtcggcg tgtctttcaa cctcgcaggc aatatcgcga ctggaatcgt caagtcgttc
      601 tttgtcgtct tcacgatgta ttacctcttc cgcgatggcg accgcatcgt cagcaaactg
      661 ccggcggcgt tgccgctcga acggcgccag agcgaagtga tcatcaaccg gacgcgcgag
      721 gtcgtcagcg cgagcgttta cggcatcgtc gtgattgctt cactccaggg actgctcggc
      781 gggatcgcgt tctggatcct cggcattcct tcgccgctgt tgtgggcggt gctcatgggt
      841 ttcgtttgca tgatcccggt gctcggttcg tttctggttt ggctgccgct ggcgatctat
      901 ctcggcctga ccggtcattg gacgaaagcg attctcctga tcctgtgggg cgcgcttgtg
      961 atcagcacga tcgataactt cctgcggccg aagtggatga agaaccaaac gcgcctgcac
     1021 gagctgctgg ttttcttttc cgtgctcggc ggcatcagtg ttttcggcct gttgggaatc
     1081 gtgctgggtc cggtaatcct ggccatcacg atgggactct tgcacacgtt ccgggtgcat
     1141 caccacggcg acgaggcagt tgacgaggtt tgataaaatt gaagcgcaca gaacgaacaa
     1201 gaggtagaac atgcgggaag caattgagtt tttaagtgac gaacaatttg gaacagaacc
     1261 agtaacaaac aacgagcgag cggcaaacaa cacaactgat gacgagctgc tcgacgccta
     1321 ttcaagagcg gtaatttcgg cggcggaaaa agtgagcccg tccgtcgttt atatcgaagt
     1381 acaacaaccg atcaacaatc gcagaggaga cccacgcatg ccgcgcgagg cgcgtggcag
     1441 cggctccggt tttatcttca cgcccgacgg cttcattctc accaacagcc acgtcgtcca
     1501 cggcgcgagc aaaatcgaag tcacggttac tgacggcagc aagtatcagg cggacctgat
     1561 cggcgacgac ccggacacgg atctcgccgt gatcaggatc aacgcgccga acctcgtgcc
     1621 ggctcacctc ggtgagtcgc aacaggtgcg cgtcggacaa ctggtgctgg cgatcggcaa
     1681 tccttacggg tttcaataca gcgtgacggc gggcgtggtc agcgcgctcg gccgttcgct
     1741 gcgtgcaggc tcgggacgtt tgatggacgc ggtgattcaa accgacgcgg cgctgaatcc
     1801 cggaaactcc ggtggaccac tcgtcaactc gcgcggtgaa gtgatcggcg tgaacacggc
     1861 gatgatcctg cccgcgcagg gcatctgttt cgcgacgtcg atcgacaccg cgaagtttgt
     1921 agcgagcaga ttgattcgcg acggcaaagt gagtcgcagt tatgtcgggc tcgcgggaca
     1981 gaacgttccg ctgccgcggc gaatcgttcg cttctacaac ctcgcggttg agagcggaat
     2041 tctggtggtg tcgtttgaag agaacagtcc ggcaagaaaa gcgggactgc gcgaaggcga
     2101 catcatcatc ggttttgacg atcggcccat cgccggcatc gacgatctgc acaagctgct
     2161 ggatgaagaa cgcatcggtc acaagtcaaa gctcgtgatc gttcgcggca cgcagaagtt
     2221 ggacctcgaa gtggttcccg aggagtccat acgccgctcg cgcgagtgac taaaatttaa
     2281 ctaaaggagc gtttcgttga cacatagtgt tgtaactctc ctccacgcaa aaacatacgt
     2341 ggaggagaga gacagctatg cgttggcgag gagaacggca gagcactaac atcgaggacc
     2401 ggcgtggtct aaccggcggg agggtcgctg tcggcggtgg actcggcacg ttgttaatca
     2461 tcgtcatcgc gttgctcttc ggcgcggatc cgcg
//
LOCUS       DASWTX010000807         6637 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_362947, whole genome shotgun sequence.
ACCESSION   DASWTX010000807 DASWTX010000000
VERSION     DASWTX010000807.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6637
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362947"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1886
                     /locus_tag="VGD38_12195"
     CDS             <1..1886
                     /locus_tag="VGD38_12195"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HEY0728826.1"
                     /translation="ARAFASRGRAELLLGNDEAALSALKRARDLYRAEGNKVGEALVL
                     LTQAQLHHAHGEDQTARELAVQAETDLAAFGGWHQILLARWLRADVERTLDHVDEAQQ
                     LFETAVNDSILHGQPQITERAYTGLGLVALAKGESAAAQSHFRNAIAVTEELRAPLPG
                     EEFKTAFFANKLVPYHELVRICLAAADARLSEALTLVESARSRALVDSLGAGHDNLIE
                     PRDAFEANLLEQIGELRAELTYLYKDINQPVNGHAPTRALQQELRERENKILEITRQL
                     NHRRETSASPLRSFDLEYLQQQLREDDALVEYAALGDELLAFVVTRDEVHVTRNLTSV
                     AAIVEHLNALRFQIETLRFGARAIRRHLPTLTQKTNVHLRQLHDLLIRPLKPTLEQRN
                     LIIVPYGALHYLPFHALHDGDKYLIEHSEISYAPSAATLQQCLERGEHDLNRALLMGV
                     SDEQTPRITNEIQSLSEVFPEAKAFVGESATTEALRQNATRASVVHLACHGQFRSDNP
                     LFSALRLADGWFTVRDAYGLKLDRALVTLSACETGANVIAPGDELIGLARGFFSAGAR
                     SVLLSLWMVDDETTAQMMVDFYRQMMSGRTLSAGLRAAQVKMLEQNPHPFFWSPFVLV
                     GHW"
     gene            2004..3290
                     /locus_tag="VGD38_12200"
     CDS             2004..3290
                     /locus_tag="VGD38_12200"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY0728827.1"
                     /translation="MPKNLRISLVLLVFFAAAMFFAVGDQPRAVRSASDDDFINGEVL
                     VKLTSADHLAAVAAQYNLDPNPLDQFGSRPIYRLRITDQASVENRIGQLVADERVALA
                     EPNFIEKPPEGGGNGWSVGNGWSVGDPAAYTTQWAPTVLRLAQAHTVNRGIRADGQPV
                     RIAVLDTGVDVSHPALAGRLLPGFDFVDMDTDPSEVGDLSIGPFGHGTHVAGLIALAA
                     PAAHIIPVRVLDERGLGNTWVLAEAIAFAIDPDGDPATRDGADVINLSLSTLRRTRML
                     KRVLERACDDDPTGENDFPVGKPNLVIVAAAGNGGDFDEQYPAAENVDGLIAVAASTS
                     RDRLASFSTRGSWIEVAAPGEGITSTVPGGKYGVWSGTSMAAPLVAAQAALIHAQFPK
                     IRNRDITDHIEETGRRLDGPVDVRIDFLRALTTTPD"
     gene            3434..3844
                     /locus_tag="VGD38_12205"
     CDS             3434..3844
                     /locus_tag="VGD38_12205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728828.1"
                     /translation="MTEPADLAAVWDDLKQLTRDVIEEMNRLEEFRNKTGGLDYQLGE
                     TDSIIVTKQSHPSMSVTISCRSDALEIAGRIAARGAKPIESQESLVLENRESGPSFRT
                     ETGEVLTIEETVYYILRPFLHLNGVASLAAAQQQ"
     gene            3978..4604
                     /locus_tag="VGD38_12210"
     CDS             3978..4604
                     /locus_tag="VGD38_12210"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0728829.1"
                     /translation="MPHRLLIVNDEPHLLRKLESCLGPEGFDVVTARTGRDALIKIAQ
                     AVPDLIISDTRLPGMSGFELARHLRESPRSALVPLIFLTARAESGDRIEGFRAGVDAY
                     LTKPFVTAELVAMIRSILSRVERTHAQIARLIGRSLKDGDVLQDDILTEREKGIAASV
                     ARGLTNKEIAAEMAISVRTVENHISHILDKKHFNNRVEIARYVMERGA"
     gene            complement(4617..5789)
                     /locus_tag="VGD38_12215"
     CDS             complement(4617..5789)
                     /locus_tag="VGD38_12215"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728830.1"
                     /translation="MRSLSSFLLVLVFVTASYAQQPTAKSAKNDLNVVQDSDITEPEL
                     RPLAMDARPDHKDIAAVVALKEGNNLWRQGKYKPAALSYQQAIDLQPESYAAQMNFGA
                     AKLRLQQFSEAVVAFKKAISLKPDSASAWQGLGLTQYYQEQHQLAADSLARAQQLAPQ
                     DARFNNNLGYAYMFVDKLSEAIVAFKTALELDPNFVTAKNGLCGSYALSSQPTEAVAM
                     CQDAIKTNATSAVPKYFLGYTYLEVDDPLKAIAAFEQARSLEPHTARIWVGLGFAYFK
                     QKKFDRALYHFQRAKDLNVNADDVYSAIGAAYAQMKNYEKAEIALREALTREPENRVN
                     HFNLGIVCLQRKNRECALTQYNYLKMNSDPLAKRLFVSIHGDKVVDVTAYKKASRR"
     gene            6135..>6637
                     /locus_tag="VGD38_12220"
     CDS             6135..>6637
                     /locus_tag="VGD38_12220"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0728831.1"
                     /translation="MAFLLTAPLSTNAQSTTGRLVGTVLDPNGAAVPGANITVTDNAT
                     QRARSVESNDQGLFSVPQLEFGTYTVTVAATGFKNYTATELKIDVGRDYTLNIQLEPG
                     GLQENVTVVAGADVVNATSAELSATVGQRQIQELPLNGRDPLALIGLQAGAASNGATN
                     TTINGQQ"
BASE COUNT         1471 a         1923 c         1862 g         1381 t
ORIGIN      
        1 aggcgcgcgc gttcgcatct cgcggtcgcg cggaactctt gctaggcaat gatgaagcag
       61 cgttgtcggc gctgaaacga gcacgcgatc tttaccgcgc tgaaggaaac aaggtcggcg
      121 aagcgctcgt gttgttgacg caggcacagc ttcatcatgc tcacggcgaa gatcaaacag
      181 cccgcgaact cgccgtgcag gcggaaactg atctggccgc gtttggtggc tggcatcaga
      241 tactgctcgc gcgttggctg cgcgccgatg tcgaacgaac tctggaccac gttgacgagg
      301 cgcaacagct tttcgagacc gcggtcaacg attcaattct tcacggacaa ccacagatta
      361 ccgaacgcgc ttacacgggc ttgggcctcg tggcgttggc gaaaggtgaa tctgcggcgg
      421 cccaaagtca ctttcgaaac gcgatcgcag tgacggaaga actgcgtgcg ccgctgcccg
      481 gcgaagagtt caaaaccgcc ttcttcgcta acaaactcgt tccatatcac gaactcgtgc
      541 ggatctgtct ggcagcagca gatgcacgat tgtctgaagc gttgacgctc gtcgagagcg
      601 ctcgttcacg cgcgctggtt gatagtctcg gcgccggtca cgacaacctt atcgaaccgc
      661 gcgacgcgtt cgaggccaat ctgttggaac agatcggcga actgcgcgcg gagttgacct
      721 atctctacaa ggatatcaat caacccgtaa acggccatgc gccaacgcgc gcgttgcagc
      781 aggaattacg cgaacgcgaa aacaagatcc tcgagatcac tcggcaactt aaccaccgcc
      841 gcgagacctc cgcctcgccg ctccgctctt ttgatctcga gtatttgcaa caacagctca
      901 gggaagacga cgctttagtc gagtatgcag cgcttggcga tgagctgctg gctttcgtcg
      961 tcacgcgcga cgaagtacac gtcacacgca atctaacttc agttgcggca atcgtagaac
     1021 acctcaacgc cctgcggttc caaatcgaaa cactacgctt cggcgctcgc gccattcgcc
     1081 gtcatctccc aacgctgacg caaaaaacca acgttcacct gcggcaatta cacgacctgt
     1141 taatccgccc gctgaaacca acgctcgaac aacgcaacct gatcatcgtc ccttacggcg
     1201 cactccacta tcttcctttt cacgcgctgc acgacggcga caagtatctg atcgaacaca
     1261 gcgagatctc ctacgctccc agcgccgcga ctctgcaaca gtgtctcgag cgcggcgaac
     1321 acgatctaaa ccgcgcgcta ctgatgggcg tctcagacga acaaacaccg agaatcacga
     1381 acgagattca atcactgagc gaagtctttc ccgaagcaaa agccttcgtc ggcgaatccg
     1441 ccacgaccga agcgctgcgc caaaacgcaa cccgcgccag cgtcgtgcac ctcgcgtgtc
     1501 acggacagtt tcgctcagac aacccactct tttcagcgct gcgcctcgcg gacggctggt
     1561 tcacggttcg cgatgcttat ggcctgaaac tcgaccgcgc actcgtcacg ttgagcgcct
     1621 gtgaaacggg cgcaaacgtc atcgcgcccg gcgacgagct catcggcctg gcccgcggtt
     1681 tcttctccgc cggcgcgcgt tcggtgctcc tgagtttgtg gatggttgac gacgaaacga
     1741 ccgcgcaaat gatggtagat ttctatcgac agatgatgtc cggccgcact ttgtccgccg
     1801 gtttgcgcgc agcccaagtg aaaatgctcg aacaaaatcc tcatccgttc ttctggtccc
     1861 ctttcgtttt ggtgggacac tggtaaaata cccgcacccc agacggcacg agctttgccc
     1921 agacgctgct gattgcgatt tgaaaattta agcaggaaac tttttccggc cttctaagcc
     1981 cagactgttc agagaagccg atcatgccaa agaatctaag gatttcgttg gtgctgctgg
     2041 tgttctttgc ggcagcaatg tttttcgccg ttggtgatca accccgcgcg gttcgttccg
     2101 cgtcagacga cgattttata aacggtgaag tgctcgtaaa gcttacgagc gccgaccatc
     2161 ttgccgcggt cgccgcccag tacaacctcg atcccaatcc actcgatcag tttggttcgc
     2221 gacccatcta caggttgcga atcacggatc aagcaagcgt cgagaaccgc atcgggcaac
     2281 tcgtcgcaga cgaacgcgtc gccctcgcgg agccgaactt tattgagaaa ccgcccgaag
     2341 gaggcggcaa cggttggagt gtcggcaacg gctggagcgt tggcgatcca gcggcttaca
     2401 caacccaatg ggcgccgacg gtacttcgtt tggcccaggc ccatacggtc aatcgcggca
     2461 tccgcgcaga cggccaaccg gtccggatcg cggtgctgga cacgggcgtt gacgtgtcac
     2521 atccggcgct ggccggcagg ctgctgccgg gttttgactt cgtcgacatg gacacggatc
     2581 cgagcgaagt cggcgatttg agcattggac ctttcggtca cggaacgcac gtggcgggtt
     2641 tgatcgcgct tgccgctccg gccgcgcaca tcattccggt gcgagtgctc gacgaaagag
     2701 gtctcggaaa cacgtgggtt ttggcggaag ccatcgcgtt tgccatcgat cccgacggtg
     2761 atccggccac gcgcgacggc gcggacgtca tcaatctcag tctcagcacc ctgcgccgca
     2821 cacgcatgtt gaaacgcgtg ctggagcggg cgtgtgacga cgacccgaca ggcgaaaacg
     2881 atttcccggt cggaaagcca aacctcgtga tcgtggcggc tgccggaaat ggcggcgatt
     2941 ttgacgagca atacccggcc gcggaaaacg tcgacggctt gattgccgtc gctgcgtcga
     3001 cgtcgagaga ccggcttgcg tcgttctcga cccgcggatc gtggatcgaa gtggccgcgc
     3061 ccggagaggg catcaccagc acggttccgg gtggaaagta tggcgtgtgg agtggcacgt
     3121 ccatggccgc gcctctggtt gccgcacagg cggctctgat ccacgcgcag tttccaaaaa
     3181 tccgcaaccg ggacatcacg gatcacattg aagagacggg acggcgcctg gatggtccgg
     3241 tcgatgtccg aatcgatttt ctgagggcgt tgacgacaac gcctgactaa attcgcgtgt
     3301 tccatggtgg aacattggcg agtgcgagtg tctcatctgt aagcatcggt ccacgggggc
     3361 gtatttctga cgctggtccc ggcactgtca gattggtcga actatcccca cgatcgatcg
     3421 caggtcggaa actatgacgg aaccggcaga cttagccgcg gtttgggacg atttaaaaca
     3481 actgacccgg gatgtgattg aagagatgaa ccggctcgag gagttcagaa acaagaccgg
     3541 cggactcgat tatcaactcg gcgaaacgga ttcaatcatc gttacgaagc aatcgcatcc
     3601 gagcatgtcg gtgactataa gttgtcgctc ggacgctttg gagattgcgg gcagaattgc
     3661 cgcgcgaggc gccaaaccca tcgaatccca ggagagtttg gtgttggaaa atcgtgagag
     3721 tggtccttcc tttcgcaccg aaaccggcga agtgttgacc atcgaagaaa ccgtttatta
     3781 catcctgcgt cctttcctgc atctcaacgg cgtggcttcc ctggccgcag cgcaacagca
     3841 ataagcttcg gcagttaaca acatacaaat cgcaatagtc gcgattgctt aatgacctca
     3901 agcgaacaga aatgtttgcg agagcgcgat accatcccct tgcgcggcct ggaaaaagaa
     3961 caagggggtc gtgggaaatg ccgcacaggt tgttgattgt taatgacgaa ccgcatttac
     4021 tgcgaaaact cgagtcgtgc ctggggccgg aggggttcga tgtggtgacg gcgcggactg
     4081 gacgcgacgc cctcatcaag atcgcccaag cggtgcctga tttgatcatt agcgacaccc
     4141 ggttgccggg tatgagcggt ttcgaactcg ccaggcacct gcgcgagtcg ccgcgctcgg
     4201 cactcgtgcc gctcatcttc cttacagcca gggcagaatc cggcgatcgg atcgagggat
     4261 tccgcgcggg cgtcgatgct tatttgacga agccgttcgt tacggctgag ttggtggcga
     4321 tgattagaag tattctgagt cgcgtcgaac gcacgcacgc gcagatcgcg cggctgatcg
     4381 gccgcagcct caaagacggc gacgtcttgc aggacgacat tctcaccgag cgggagaagg
     4441 gaattgctgc gtcagttgca cgcggcctga ccaacaaaga gatcgccgcg gagatggcca
     4501 tcagcgtgcg aacggtcgag aaccacatca gtcacattct cgacaagaaa cacttcaaca
     4561 atcgcgttga gatcgcgcgc tacgtgatgg agcgcggagc ttagcgtccc cagaggtcaa
     4621 cgccgtgacg cttttttata ggccgtcacg tcaaccacct tatcgccgtg aatgctgacg
     4681 aatagtcttt tcgcaagcgg atcgctgttc attttcagat agttgtattg cgtcagcgcg
     4741 cactcgcgat tcttgcgttg caaacaaacg atgccgaggt tgaaatgatt cacccggttc
     4801 tcgggctcgc gcgtcaacgc ctcccgcaac gcgatttccg ccttctcata attcttcatc
     4861 tgcgcgtacg cggcgccgat ggctgagtac acatcgtcgg cattcacgtt caaatctttc
     4921 gcgcgctgaa agtggtacaa cgcgcggtca aacttcttct gtttgaagta ggcgaacccc
     4981 agtccgaccc agattcttgc ggtgtgaggc tcgagactac gagcttgctc gaacgccgcg
     5041 attgctttca gcgggtcatc aacctcgaga taagtatagc caaggaagta tttcggaact
     5101 gctgaagtag catttgtctt gatggcgtcc tggcacatag caaccgcttc ggtgggttgg
     5161 cttgaaagag cgtacgatcc gcacagacca ttcttggccg tcacaaaatt cggatccagc
     5221 tcaagcgctg ttttgaacgc cacgatcgct tcactcaatt tatctacgaa catgtacgcg
     5281 tagccgagat tgttgttgaa acgggcatcc tgaggcgcga gttgttgtgc gcgtgcgagc
     5341 gagtcagccg cgagctggtg ctgttcctgg taatactgcg tcaatcccaa gccctgccaa
     5401 gccgacgcgg aatccggttt cagcgagatt gcttttttga aagcaactac ggcttccgaa
     5461 aactgctgca accgcagctt tgccgcgccg aagttcattt gcgccgcgta cgattcgggc
     5521 tgaaggtcga ttgcttgttg ataactcagc gccgcgggtt tgtacttccc ctgccgccaa
     5581 aggttgttgc cttctttgag ggccacgacc gcggcgatgt ccttatggtc cgggcgcgcg
     5641 tccattgcca gtggtctcaa ttcgggctca gtgatgtcgc tgtcctgaac tacgttgaga
     5701 tcgtttttgg ctgacttcgc ggttggttgt tgagcgtaag aagcagtcac gaagaccagg
     5761 acgagtaaga aagagctcag gctgcgcatt attccctctc agaaggtcga ttttgaaatc
     5821 aaacaatctc gagcgggatg cgaggcgcga agcgcaaccg atgtgccacc agcgttttgg
     5881 agtgatattg aagaaggaag tcgtcactgt gatggaaaga aggtcgctcc acgccggcgc
     5941 gcgtaacgtt aacgaccacc atcaacaagc aagtcagtac aattactcat accgaatgag
     6001 tattcgtact cattcagcca cgcccaccaa aatataagat tagacccccc tcaaccactt
     6061 atctagtttc cctcgccgcc gaccaacgaa ttttggagga gaacatgaag ggatatattg
     6121 ttttagccgc actcttggct tttttactca ccgcgccttt gtcgaccaat gcgcaatcaa
     6181 ctaccggcag actcgtcggc actgtgctcg acccaaacgg cgctgccgtt cccggcgcta
     6241 acataaccgt aaccgacaac gccacacagc gggctcgctc cgttgaaagc aatgaccagg
     6301 gacttttcag cgttccgcag ctcgagttcg gcacctacac ggtgacagtc gccgccacag
     6361 gttttaagaa ctacacggcg accgaactca agatcgacgt cggaagagac tacacactca
     6421 acattcaact cgaacccggc ggacttcagg agaacgtcac cgttgtcgct ggtgctgatg
     6481 ttgtcaacgc cacttccgcg gaattgagcg cgacagtcgg acagcgacag attcaggagt
     6541 tgccgctcaa cggaagagat ccgcttgcct tgatcggtct tcaggccggt gctgcctcaa
     6601 acggtgcgac caacacgacg atcaacgggc agcagag
//
LOCUS       DASWTX010000808         1571 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_270259, whole genome shotgun sequence.
ACCESSION   DASWTX010000808 DASWTX010000000
VERSION     DASWTX010000808.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1571
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270259"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1001)
                     /locus_tag="VGD38_12225"
     CDS             complement(<1..1001)
                     /locus_tag="VGD38_12225"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY0728832.1"
                     /translation="MNSVSAEIRQPPVTPLALPFYYGWVHVFIAALAMVGTLPGRTQG
                     LGLITEPLLRDFQIDRVAFARINLWATLIGALFSIGVGRLIDRFGSRIMLTVVSIALA
                     SVVLGMSATQNVAAVALFITLTRGFGQSALSVVSIAMIGQWFVRRLNIAMAIYTIALS
                     IGFMLAFPLIGAIVVTNGWRTAWWIIGLALLFGLAPLAWLLVRRSPESCSNEPDGEAA
                     ELGRETPADYTLGQALSTPSFWVFGISSAVYGLIASGIALFNESILAERRFDASTYYR
                     SLVIVALTSLVGNFLGGWIASKWKMNRLLALAMVLLACSLAALPQVSTQTHVAAYAAV
                     "
     gene            complement(982..1494)
                     /locus_tag="VGD38_12230"
     CDS             complement(982..1494)
                     /locus_tag="VGD38_12230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728833.1"
                     /translation="MSSGEFLTRSTIWISILSYAIGAIVFAMARGRSGFDRWARLAWT
                     IGCAALIVHFICAFNFYHAWSHESAYVDTARQTAEVMRVNWGGGLFINYAVALLWIAD
                     VSWWWMAGIGSYRRRPWLLTLIWHSFLIFIIFNATVVFKDGLTRWVGLLVCVSLVLSW
                     VLIRNEFSKR"
BASE COUNT          402 a          523 c          398 g          248 t
ORIGIN      
        1 accgcggcat acgcagcaac atgcgtttgc gtcgaaacct gcggcagcgc ggcgagcgaa
       61 cacgcaagca ggaccatcgc gagcgcgagc aagcgattca tcttccactt cgaagcgatc
      121 cagccgccga gaaaatttcc cacgagcgaa gtcaacgcga cgatcaccag gctgcgataa
      181 tacgtcgaag catcgaaccg gcgttcggcg agtatcgact cgttgaacaa agcgataccg
      241 gaagcaatca gtccgtaaac ggcactcgaa attccaaaca cccaaaagct cggagtcgat
      301 aaagcctggc ccagcgtgta gtcagctggt gtttcccggc cgagttccgc tgcctcgcca
      361 tccggctcgt tcgagcaaga ctcaggcgat cgcctcacga gcaaccacgc aagcggcgcg
      421 agcccgaaca gcagcgcaag cccgatgatc caccacgccg tgcgccagcc attcgtcacc
      481 acgatcgcgc cgatcaatgg gaacgccagc ataaacccga tactcaaggc gatcgtgtag
      541 atcgccatcg cgatgttgag ccgccgtaca aaccactgcc caatcattgc tatgctgacg
      601 accgacaacg cactctgtcc gaagccgcgc gtcagcgtga tgaacagtgc aactgccgcg
      661 acgttctgcg tcgcactcat tccaagaacc accgacgcca acgcgatcga gacgaccgtc
      721 aacatgatcc tgctgccaaa gcgatcgatc aaccgtccca cgccgatcga aaacagcgcc
      781 ccgatcaacg tggcccagag atttatgcgt gcgaacgcga cacgatcaat ctgaaaatcc
      841 cgcaacaatg gctcggtaat caatcccaac ccttgtgtcc gtccgggcag cgtcccgacc
      901 atcgccagcg cggcgatgaa cacgtgcacc cagccgtagt aaaacggcag tgccaaaggc
      961 gtaaccggcg gttgccgtat ctcagcgctt actgaattca ttccgtatca atacccaact
     1021 cagaaccaaa ctcacacaaa cgagcaaccc gacccagcgg gtcaacccgt ccttaaaaac
     1081 aaccgtcgca ttaaagatga tgaagatcaa aaagctgtgc cagatcagcg tcagcaacca
     1141 cggacggcgc cgataagacc cgatgcccgc catccaccac cacgacacgt ccgcgatcca
     1201 aagcagcgcg accgcgtagt ttatgaacag cccgccgccc cagttgacgc gcatcacctc
     1261 cgcggtttgc cgcgccgtgt cgacgtaagc agattcatga ctccacgcgt gatagaagtt
     1321 gaacgcgcag atgaaatgca cgatgagggc cgcgcagccg atggtccatg caagccgcgc
     1381 ccagcgatcg aaaccggacc gtccgcgcgc catcgcaaac acgatcgctc cgatcgcata
     1441 cgacaggatc gaaatccaga tggtgctgcg tgttaagaac tctcccgagc tcatgcttgt
     1501 ttcttagctg cgttgttgtt gcgcgaagtg cagcgccgct ccgatcccgg ctccgaacaa
     1561 caggccgtac g
//
LOCUS       DASWTX010000809         2019 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_362968, whole genome shotgun sequence.
ACCESSION   DASWTX010000809 DASWTX010000000
VERSION     DASWTX010000809.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2019
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362968"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..325)
                     /locus_tag="VGD38_12235"
     CDS             complement(<1..325)
                     /locus_tag="VGD38_12235"
                     /inference="COORDINATES: protein motif:HMM:NF024423.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEY0728834.1"
                     /translation="MLSTLIELQRLKGLDRTGWTLRGFPNGTESVAAHSFGVSVTAML
                     LADELIAQGVAVNVEKILRISLLHDWAEARIGDMPRTATMYFGSEVRKQAETAAFRDL
                     TNDNEV"
     gene            complement(608..1165)
                     /locus_tag="VGD38_12240"
     CDS             complement(608..1165)
                     /locus_tag="VGD38_12240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728835.1"
                     /translation="MNKLAAFLVVLCSAWIVNAQGPTADTGEKRVPLTQAAVAMDGAG
                     ALEATLRTTVLNGSPEAPVTNVRVVVKNTSAIPYAFVSGIVTFYDAAGIRCGEGIFKA
                     DALAVNESFETDTPGLRIRCEATSWRIVAMNLLPSIPPATMIARAPQNLVLEIDGESH
                     PIQLDKPLVVTLGERRRTIVVRTAP"
     gene            complement(1205..1693)
                     /locus_tag="VGD38_12245"
     CDS             complement(1205..1693)
                     /locus_tag="VGD38_12245"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEY0728836.1"
                     /translation="MRSWEWRDREAIVRHANNRNVWINLRDRFPHPYTAADARRWLDS
                     VVGMKPESNFAIAVAGEAVGGIGFTVQPDVARRSAEIGYWLGEEFWGRGIATEALIAV
                     TDYAFSNYDVCRLFAHVFDWNAASARVLEKAGYVFEGRLRKSVTKDGHTIDQLMYAMI
                     RE"
     gene            complement(1704..>2019)
                     /locus_tag="VGD38_12250"
     CDS             complement(1704..>2019)
                     /locus_tag="VGD38_12250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728837.1"
                     /translation="CRDGLGRPDFMKWFESRDARALAERLRDEYEVNGQTAWALLTKA
                     ERFRVCLLSELPDDQVKLMRMTPVRSLAEALDGANGSTGFIMPRGAAILPRIENTGGA
                     EA"
BASE COUNT          404 a          635 c          540 g          440 t
ORIGIN      
        1 agacctcgtt atcgttagtc aaatcgcgaa atgcagccgt ctcggcctgc tttctgactt
       61 cggaaccaaa atacatcgtc gccgtgcgcg gcatgtcgcc gatgcgtgct tcggcccaat
      121 cgtgcagcaa cgagatgcgc aggatctttt caacgttcac tgcgacgccc tgcgcgatca
      181 gttcatccgc gagcaacatc gccgtgacgc tcacgccgaa tgaatgagcg gccacggatt
      241 cggtcccgtt cggaaaaccg cgcaacgtcc agcccgtgcg gtcgagacct ttcagccgtt
      301 gtaattcgat cagcgtgcta agcattaaat actcaagcgc tccgtcggga gcatctgttt
      361 gtctcccaac ggagcgtctg gagtccaaaa atcttccgag ctatctgcaa ctagcgtgct
      421 cgcagccaca ggctatttcg gttacgcctg aatcttcggc gttctcgcag tacacgctac
      481 agtagtcact atcgcggtcc gccatgcatt ggcaagcact gtgctcgcac tttttattgt
      541 ctgccatact tcaccccctg ctttctcgat ccctatggtt cgtcttactg acggtcaatg
      601 ctagcaatta aggagccgtg cgaacaacaa ttgtgcggcg cctttcgcca agcgtgacga
      661 caagaggctt gtccaattga atcgggtgcg actcgccgtc gatctcgagc acgagattct
      721 gcggcgccct cgcgatcatc gtggctggcg gaatgctcgg caacaggttc atcgccacga
      781 tgcgccaact tgttgcttcg caacggattc tgaggccagg agtgtctgtt tcgaacgact
      841 cgttcaccgc caacgcgtcc gctttgaata tcccttcgcc gcagcgtatt cccgctgcgt
      901 cgtagaaggt gacgataccg gaaacgaagg cgtacgggat cgcgctcgtg tttttgacga
      961 ccacgcggac gttcgtgacc ggcgcttcag gcgagccgtt caagaccgta gttcgcaagg
     1021 tagcttcgag cgcgccggcg ccgtccattg cgaccgctgc ctgtgtcaac ggcacgcgct
     1081 tctcgccggt atccgcggtt ggtccttgcg cgttcacaat ccaggcgctg cataagacaa
     1141 ccaagaaggc cgctagcttg ttcatgactt cgtctcctgt gacttcaaat gcgagccgag
     1201 atttctactc gcgaatcatc gcatacatta actggtcgat ggtgtggccg tccttcgtca
     1261 cgctctttcg caaacggcct tcgaaaacat aaccggcttt ttcgagcacg cgcgccgaag
     1321 cggcgttcca gtcaaacaca tgcgcaaaca atcggcagac atcgtaattg gaaaaggcat
     1381 agtccgtcac ggcaattaac gcttcggtcg cgatgcctcg tccccaaaac tcttcgccca
     1441 gccagtagcc gatctccgca gagcgccgcg cgacgtcggg ttgcacagtg aaaccgatgc
     1501 caccgaccgc ctcgccggca acagcgatcg cgaaattgga ttcgggtttc ataccgacga
     1561 cgctgtcgag ccagcggcgc gcgtcggcgg cggtgtacgg gtgtgggaag cggtcgcgca
     1621 gattgatcca gacgttgcga ttattggcat gccgcacaat agcctcacgg tcgcgccact
     1681 cccaactccg cacactgcac gttttaagct tcagctccac ctgtgttttc gatcctcggt
     1741 aagatcgctg ctccgcgcgg catgatgaat cccgttgagc cgttcgcgcc gtcgagcgct
     1801 tcggcgagcg agcgcacggg cgtcatgcgc atcagtttca cttggtcgtc cggcaattcc
     1861 gaaagcagac agactcgaaa gcgttccgct tttgtaagca aggcccaggc cgtttgcccg
     1921 ttgacttcat actcatcccg caaccgctcg gccagcgcac gcgcatcccg ggactcgaac
     1981 cacttcataa aatccggacg ccccagtccg tcgcggcac
//
LOCUS       DASWTX010000810         2053 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_183113, whole genome shotgun sequence.
ACCESSION   DASWTX010000810 DASWTX010000000
VERSION     DASWTX010000810.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2053
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183113"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1137)
                     /locus_tag="VGD38_12255"
     CDS             complement(<1..1137)
                     /locus_tag="VGD38_12255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728838.1"
                     /translation="MSVRPLRHLVCSVFILVVSAAAAVAQSSALPKKLPSVEKIVDNY
                     LKAVGGKKVIAAHRDVTYEWIVQLSNQPAGTPNESSTANQSIGTARTLRKAPASERFE
                     LTFGNGQIIAGTNTRSAWELGLDKQLRTLTSLEAANAKLQTTLAASRLVDFKKANVLA
                     RVLSLGDLGSEPAYIVEFSTRSGARVQYYFSVKTKLITKITSDAKKTRLIFEDYRSTN
                     GVLEPHRVRMNLDGSGELTLVLQSVKYNTGINDQLFDPPAAEKLDITSLLLEVGRNQD
                     QLEDRVSEYSFKQTETDREINGKGELKKQTVKVYEVYPLPNREAVLKLISENGTPLSP
                     ERAAKEEKRVEEEFRKAERDKDKDAAEAAKRKAEREKQKSEREKK"
     gene            complement(1248..1385)
                     /locus_tag="VGD38_12260"
     CDS             complement(1248..1385)
                     /locus_tag="VGD38_12260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728839.1"
                     /translation="MDRYKIRGGHLNEHEFETQKGEQKKDKATPKQKVSKTTPPKDPK
                     H"
     gene            1486..1561
                     /locus_tag="VGD38_12265"
     tRNA            1486..1561
                     /locus_tag="VGD38_12265"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1519..1521,aa:Thr,seq:cgt)
     gene            complement(1689..>2053)
                     /locus_tag="VGD38_12270"
     CDS             complement(1689..>2053)
                     /locus_tag="VGD38_12270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728840.1"
                     /translation="KGCAQCSSLKAPEGMSLKVGEVAVPTYGGTLTIDGIQLESRHKD
                     FGEHFSPSKRYVIFLSLDSATSIGKLSLGPYGVFTLTPSDKIIPIVQGKSPISQDLEL
                     KFENSLTRTREYLRNPSS"
BASE COUNT          369 a          558 c          556 g          570 t
ORIGIN      
        1 tttcttctcg cgttcagact tctgcttctc acgttcagct tttcgcttcg ccgcttccgc
       61 cgcatctttg tctttgtctc gttcggcttt ccggaactct tcctccacgc gcttctcttc
      121 cttcgccgcg cgttcgggcg acagcggcgt gccgttctcg ctgatcaact tcaggactgc
      181 ttcacgattc ggcaagggat aaacttcgta aaccttcacc gtctgcttct tcagttcgcc
      241 tttgccgttg atctcgcgat cggtttcggt ttgtttgaac gagtactcgg agacgcgatc
      301 ttcaagctgg tcctggttgc gtccaacttc gagcagtaaa gatgtgatgt cgagtttctc
      361 ggcggctggc ggatcgaaaa gttgatcgtt gatgccggtg ttgtatttga cgctttgcag
      421 aacgagcgtg agttcgcctg agccgtcgag attcatccgc acgcgatgcg gctcgagcac
      481 gccgtttgtg gagcgatagt cttcgaagat gaggcgcgtc ttctttgcgt cgctcgtgat
      541 cttggtgatc agttttgtct tgacgctgaa gtaatactgg acgcgcgcgc cgctgcgtgt
      601 tgagaactcg acgatgtaag cgggttcgga gccgagatcg ccaagcgaca acacccgcgc
      661 gagtacgttt gcttttttga agtcgacaag tcgtgacgcg gcgagtgtgg tttggagttt
      721 tgcgttcgcg gcttcgaggc tggtcagcgt tcttagttgc ttatcgagac caagttccca
      781 cgccgaacgc gtattcgttc ccgcgatgat ctggccgttg ccgaaggtca gttcgaagcg
      841 ttccgacgcg ggcgccttgc gcagcgtgcg cgccgtgccg atggattggt tcgccgtgct
      901 tgattcgttc ggagtgccgg ctggttgatt gctgagctgg acgatccact cgtaagtgac
      961 gtccctatgc gcagcaatca ctttctttcc gccgaccgcc ttgagatagt tatcgacgat
     1021 cttctcaacc gacggcagct tcttcggcag cgcactgctc tgcgccaccg ccgccgcagc
     1081 actaacgacc agaatgaaaa ccgaacagac gagatgcctt aggggccgta cactcattta
     1141 gtgattatgg ctgacttcgg ccgctcgtgt cgcgccctca gcgcgtcgga tctgggcctg
     1201 gcttgggctt taggtcttgg ggttcgcgcc cgttagcgct tcgcttctta gtgcttcggg
     1261 tccttcggcg gcgttgtttt cgacactttc tgcttcggcg tggccttgtc cttcttttgc
     1321 tcgcccttct gggtttcaaa ctcgtgttcg ttcaaatgac caccgcgaat tttgtatcga
     1381 tccacgtttt tagttgcatc ttttggcatc gcatgtactc ctgcttgaca ctacaaatcc
     1441 cgcgttcgta tagtgcaaca cgtgttccgc gtcccgtcag cctaagccgg cttagctcag
     1501 ttggtagagc gtctgattcg taattagaag gtcgccggtt caattccggc agccggctcc
     1561 acataaatag cctaataagt gccagcgaca aaattcgtcg cgatatagcc cgcccaacct
     1621 aacgcgtaag tcctctttta cggtaacgca tacagaactc ttcgaaaccc ttgggtttgg
     1681 atccgctatc agcttgatgg attacgaagg tattccctgg tgcgagttag agaattttcg
     1741 aacttgagtt caaggtcctg actgattggt gatttaccct gaacgatcgg aatgatcttg
     1801 tcagaaggcg ttagggtaaa tactccgtac gggcccagcg atagtttccc gatgctggtt
     1861 gcggaatcca atgaaaggaa tatgacgtat ctcttagatg gtgaaaaatg ctcgccaaag
     1921 tccttgtgcc ggctctccaa ttgaatgcca tcgattgtca gagtcccgcc gtaggttggg
     1981 accgctactt cgccaacctt caaagacatt ccttcggggg ctttgaggct ggaacactga
     2041 gcacaccctt tgg
//
LOCUS       DASWTX010000811         2284 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_270282, whole genome shotgun sequence.
ACCESSION   DASWTX010000811 DASWTX010000000
VERSION     DASWTX010000811.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2284)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2284)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2284
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270282"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..180)
                     /locus_tag="VGD38_12275"
     CDS             complement(<1..180)
                     /locus_tag="VGD38_12275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728841.1"
                     /translation="MSTETIKHPPLVKGAGIRTGVNTGRTLAWLKQFWARLMAGKKKL
                     LIGGAIMLSVMAAGFY"
     gene            351..884
                     /locus_tag="VGD38_12280"
     CDS             351..884
                     /locus_tag="VGD38_12280"
                     /inference="COORDINATES: protein motif:HMM:NF025173.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HEY0728842.1"
                     /translation="MNKLGRFKMLAIATLSAIALAASIAVAQTATTNQDNGQGQRREW
                     RGPHGNRGGDHKRGVGGMRARGFFRGLNLTDDQKAKMKQIRESFAETNKPLREQLRAK
                     RQELRQANEGGTFNEALATQKLTEIAPLEAKLMAARANLHQQMLSVLTPEQKAQLEQS
                     RAQFKQRREQRRGTNQQ"
     gene            1068..1601
                     /locus_tag="VGD38_12285"
     CDS             1068..1601
                     /locus_tag="VGD38_12285"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEY0728843.1"
                     /translation="MVRRYSPRVFATASRFFRQRSVVEEAAQEVFLKAYTQLGSYEGR
                     GSMEGWLTRITTNTCLNMLRGSKRRPELTVSDLSEEEDEWLEGQLSDPEQPSVENNLV
                     AADLADRLLSVLSPEDQQALLMIDGEQASVKEVAEATGWSESKVKVRAFRARKKVREA
                     MERLMGSKEKPATSGSR"
     gene            1605..2093
                     /locus_tag="VGD38_12290"
     CDS             1605..2093
                     /locus_tag="VGD38_12290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728844.1"
                     /translation="MAGLMKDKHITEVLDNAALASLSPSELDEIRAHARDCEPCGDAF
                     AAAQLSALVIKERAHAVIEPSPFFQTRVMAALREQQAAESVPVLWRLWNSARGLVSSM
                     ALTTAALAALSFMVSAPATPAVPDQTVALTAESVIFGQDADELTYEQVMNTIYANDDE
                     DR"
     gene            2097..>2284
                     /locus_tag="VGD38_12295"
     CDS             2097..>2284
                     /locus_tag="VGD38_12295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728845.1"
                     /translation="MNNITRNRWQVRVAAAIIFVLGFTAGILALNIYRGLARADGRDR
                     FEHLSERLNLNADQKTKV"
BASE COUNT          535 a          551 c          723 g          475 t
ORIGIN      
        1 atagaagccc gccgccataa cgctcagcat gatggcgccg ccgatcaaaa gcttcttttt
       61 accggccatc agtctcgccc aaaactgctt caaccaggcg agtgttcggc cggtgttcac
      121 gccagtgcga ataccggcgc cctttactaa aggtggatgt ttaatcgttt cagtcgacat
      181 ttagttcctc cgtgtccctt tgctatagac acgggctatg ccagaacggt tacaaccggg
      241 cgtttttcta agacttacaa atgatttgta accatttcgt tgggaagcgt gtctgacaag
      301 tcgggacact cccctggaaa ttgacaaggt acttaggagt aaggaacaga atgaataaac
      361 tcggacgctt taagatgctt gcaatcgcga ctttgtcggc aattgcttta gctgcttcga
      421 tcgccgttgc tcaaacggcc accaccaatc aggacaacgg tcagggtcag cgccgcgaat
      481 ggcgtggacc ccacggtaat cgcggcggcg atcataagcg tggcgtcggc ggaatgcgcg
      541 ctcgcgggtt cttcagaggt cttaatctaa ctgatgacca gaaagcgaag atgaaacaga
      601 tccgtgagag cttcgccgaa acaaacaagc ccctgcgcga acagcttcga gctaagcggc
      661 aggagttgcg tcaggcgaac gaaggcggta cgttcaacga agcactggct actcagaaac
      721 tgacggaaat cgctccgctc gaggctaagc tcatggcggc aagggcgaac ctgcatcagc
      781 agatgctttc cgttttgaca cctgagcaga aagcccagtt ggaacagtcc cgagcgcagt
      841 tcaagcaacg tcgcgaacag cgcagaggca ccaatcagca gtaagcgtct ccccccgctt
      901 ctttggagtg cgtcggtctt gttggcaaaa aggtagcgac gagacaggcg cactccaggg
      961 aggtgttcaa acgatgagga ccgcaactga cgaatgggct cgaacaggcc tcggacatcg
     1021 acctggcgcg acaagcgcag gctggagacg agtctgcctt tgcggaaata gtcaggcgtt
     1081 acagcccgcg ggtgtttgcg acggcgagcc ggttctttcg tcaacgaagc gtggttgaag
     1141 aagccgcgca ggaagttttt ttgaaagcgt acacgcagct cggaagttat gaaggacgcg
     1201 gctcgatgga gggttggtta acaaggatta caaccaacac ctgtttgaac atgctgcgtg
     1261 gatcgaaacg gcgtcccgag ttgacggttt cggatctgag tgaagaagaa gacgagtggc
     1321 tggaagggca gttgtcggat ccggagcagc cgtcggttga aaataatttg gtggcggcgg
     1381 atttagcgga tagattgttg agtgttttgt cgccggaaga tcagcaggcg ttgttgatga
     1441 ttgatggcga gcaggcgtcg gtgaaggaag ttgcggaagc gaccggttgg tcggagtcga
     1501 aagtgaaagt gagagcgttt cgagcacgga agaaagttcg cgaagcgatg gagcgtttga
     1561 tgggttcgaa agagaaaccg gctacgagcg ggagcaggtg aacgatggca gggttgatga
     1621 aagacaagca catcacggaa gtcctggata atgcggcgct ggcgagtctg tcgccgagcg
     1681 aactcgacga gattcgcgcg catgcacggg actgcgaacc gtgcggcgac gcctttgcgg
     1741 ctgcgcaact ctcggcgttg gttatcaagg aacgtgcgca tgcagtgatt gagccgtcgc
     1801 cgttctttca aacgagagtg atggcggcat tgcgtgagca gcaggcagcg gagagcgtgc
     1861 cggtgctgtg gcgtttgtgg aactcggcac gtgggctcgt ctcctcgatg gcgttgacga
     1921 ccgctgcact tgctgctctg agttttatgg tttcagctcc tgcaacacct gctgtcccgg
     1981 accagactgt ggcgttgacg gcggagtcgg tgattttcgg acaggatgcc gacgagctga
     2041 cgtacgagca ggtgatgaat acgatttacg cgaatgacga cgaggatagg tagtcaatga
     2101 acaacatcac tagaaacagg tggcaggttc gagttgcggc tgcgattatc ttcgtgctgg
     2161 ggtttaccgc cggcattctg gcgctgaaca tctatcgcgg actggcgcgt gccgacggcc
     2221 gcgatcggtt cgagcacctt tcggagcgtt tgaatctgaa cgcggatcag aagacgaagg
     2281 tgca
//
LOCUS       DASWTX010000812         2680 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_406607, whole genome shotgun sequence.
ACCESSION   DASWTX010000812 DASWTX010000000
VERSION     DASWTX010000812.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2680
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_406607"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1427)
                     /gene="lptC"
                     /locus_tag="VGD38_12300"
     CDS             complement(<1..1427)
                     /gene="lptC"
                     /locus_tag="VGD38_12300"
                     /inference="COORDINATES: protein motif:HMM:TIGR04409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HEY0728846.1"
                     /translation="MIARIVAFTLLVSGIAVVAVSYYKLRNVEKFKAKSEKPELSKEV
                     TGVVEGYEQRVTKDGRLYMHVKASRDITFSDNHHELENVSMAVYPAEGDVPDQIAAAR
                     AIYWPDTNIVSFVGNVKIDTKEKLHVATESLSFDQTSGVAQTDAAVAFNRENVSGTST
                     GAVVEQKAKRLELKKDVAIKIEPQLNGAKGTRARPVTIRAARGTFEHEAQRLTFAGGA
                     TVEQERDILSGENIYATLNQEKRLQKAEIRGNSYLRTMEPGRAAQVHAIDMDFFLDKD
                     QRLERAFANKDVKARSLDADSDFELSGSSTLEVLFQATADTSLLKQMNAGGRSVITLS
                     APKSKANDPRAANKRLAADAVRLSWRGTGRDLEKAEAWGNAELFIEPVTSSARAERRQ
                     LNAPNFDCDFFETGNLARTCKAAGGAKAVMNPVQPTPNRGTRTFTSQTMTTVFVKDTQ
                     DVERIDGQGDSKFNEHDRNGVAATVT"
     gene            complement(1500..>2680)
                     /locus_tag="VGD38_12305"
     CDS             complement(1500..>2680)
                     /locus_tag="VGD38_12305"
                     /inference="COORDINATES: protein motif:HMM:NF014342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DHHA1 domain-containing protein"
                     /protein_id="HEY0728847.1"
                     /translation="APPAFAVLNPNQAGCTYPDKNLAGVGVAFKLVHALFREYGRETQ
                     VAAFMKVVAIGTVADVAKLVGENRTIVAIGLKDLARAANPGLKALIDVAGCGDGKGMT
                     AYDLGFRLGPRINAAGRMDAARAVVELFDTRDSAVARKLAEHLDARNEERKTVQQQII
                     DLALAELGDTTEARVAVIQGAGWHRGVIGIAASKIAERLNRPCVVLSIDGDVAHGSGR
                     SIEAYHLLNGLTACADLFEKFGGHSHAAGITIRPEKIAEFRRRLNEHAAGCLTEEDLE
                     HSVTIDMELSPEQVTFQLARELQALEPFGAGNARPVFVTRNLRCLSEPAVLKDKHLKL
                     RLAGPQNRPLEAVWWNCIESPGQTPAVNGSIELAYSIDVSAWNDEFRMQLNVADMRVS
                     "
BASE COUNT          475 a          832 c          768 g          605 t
ORIGIN      
        1 gtgacggttg cggcgacgcc gttgcgatcg tgttcgttga acttgctgtc gccctggccg
       61 tcaatgcgct cgacgtcctg cgtgtcttta acaaataccg tggtcatcgt ttgcgacgtg
      121 aacgtgcgcg tcccgcgatt cggcgtgggc tgcacgggat tcatcacggc ctttgcgccg
      181 ccggctgctt tgcacgtgcg cgcgagatta ccggtttcga aaaaatcgca atcaaagttg
      241 ggcgcgttga gttggcggcg ttcggcgcgc gcgctgctcg tgacgggttc gataaacaac
      301 tcggcattgc cccaagcttc agctttttcc agatcgcgtc cggtgccgcg ccaactcagt
      361 ctcaccgcgt cagccgccag gcgtttatta gccgcgcgcg gatcgtttgc cttcgacttc
      421 ggcgcgctca acgtgatcac actgcggccg ccggcgttca tctgtttcag gagactcgtg
      481 tccgcggtcg cctggaaaag gacttcgagc gtactgctgc cgctgagctc gaaatccgaa
      541 tcggcgtcga gcgaacgcgc cttcacgtcc ttgtttgcga acgcgcgttc gaggcgctgg
      601 tctttgtcga gaaagaaatc catgtcgatg gcgtggactt gggcggcgcg tccgggttcc
      661 atcgtgcgca ggtacgaatt gccgcgaatc tcggcttttt ggagacgctt ttcctggttg
      721 agtgtggcgt agatattttc gccgctgagg atgtcgcgtt cctgttcgac agtggctccg
      781 ccggcgaacg tcagtctttg tgcttcgtgt tcgaacgtgc cgcgagcggc gcgaatggtg
      841 accgggcgag cgcgcgtgcc ttttgcgccg ttgagctgcg gctcgatctt gatcgcgacg
      901 tctttcttga gctcgagacg tttggctttc tgttcgacga ctgcgccggt tgaagtgccg
      961 gaaacgtttt cgcgattgaa cgcgacggcg gcgtcagttt gggccacgcc gctggtttga
     1021 tcgaacgaaa gcgattccgt ggcgacgtga agcttctctt tggtgtcgat cttcacgttg
     1081 ccgacgaacg aaacgatgtt cgtgtcgggc caatagatcg cgcgtgctgc ggcgatctga
     1141 tcgggaacgt cgccttcggc gggatagacc gccatgctga cgttctcgag ttcgtgatgg
     1201 ttgtcggaga acgtgatgtc gcgcgaggct ttgacgtgca tgtagaggcg gccgtctttg
     1261 gttacgcgtt gttcgtagcc ttcgacgacg ccggtgactt ctttcgagag ttccggtttt
     1321 tcagacttcg ctttgaactt ctcgacgttg cgcagcttgt aataagagac ggcaacgacc
     1381 gcgatacctg acacgagcag cgtgaacgcc acaatcctgg cgatcatggg caccctcgcc
     1441 cgccagccaa tcccgaacgc tcgttttcgt gtcagtgcct gcatccttaa aatctctgtc
     1501 taactaactc gcatatcggc gacgtttagc tgcatgcgaa actcgtcgtt ccacgcgcta
     1561 acgtcgatcg agtaagcgag ttcgatgctg ccgttaacgg cgggcgtttg ccccggcgac
     1621 tcgatacagt tccaccaaac tgcctccagc ggccggttct gcggaccggc cagtcgcaac
     1681 ttcaaatgct tgtctttcaa aaccgccggc tccgatagac agcgcaaatt acgcgtcaca
     1741 aaaaccggtc gcgcattccc ggcgccgaac ggttccaacg cctgcaactc gcgcgctaac
     1801 tgaaacgtca cctgctcggg tgacaattcc atatcaatcg tcaccgagtg ttccagatcc
     1861 tcttcggtca aacaccccgc cgcgtgctca ttcaaacgcc gccgaaactc cgcgatcttt
     1921 tcaggccgga tcgttatccc cgccgcgtgt gaatgcccgc caaacttttc aaacagatcc
     1981 gcgcacgccg ttagtccatt caacaggtga tacgcctcga tactgcgccc cgagccatgc
     2041 gcgacgtcgc cgtcaatcga caacacaaca cacggacgat tcaagcgttc agcaatcttc
     2101 gaggcggcaa ttcctatgac gccgcgatgc cagcccgcac cctgaatcac cgcgaccctc
     2161 gcttcggtcg tgtcgccaag ctcagccagc gccagatcga tgatctgttg ctgcaccgtc
     2221 ttgcgctctt cgtttcgcgc atcgagatgc tccgcgagct ttcgcgccac agcagaatcg
     2281 cgcgtatcaa acagctcaac gaccgcacga gcagcgtcca tccggccggc agcgttgatt
     2341 cgcggcccca gccggaagcc gagatcgtat gctgtcatgc ccttgccgtc tccgcaaccg
     2401 gctacgtcga tcaaggcctt cagccccgga ttggccgccc gggccagatc tttcaacccg
     2461 atcgccacga tcgtgcggtt ctcgccgacg agtttcgcca cgtcagccac ggtgccgatc
     2521 gcgaccacct tcataaacgc cgctacttgc gtctcgcgcc catattcgcg aaacagcgcg
     2581 tgaaccagtt tgaacgcgac gccgacgccg gcgaggttct tgtccggata cgtgcagcct
     2641 gcctggtttg ggtttagtac cgcgaaggca ggtggggctc
//
LOCUS       DASWTX010000813         3729 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_76783, whole genome shotgun sequence.
ACCESSION   DASWTX010000813 DASWTX010000000
VERSION     DASWTX010000813.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3729
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76783"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            137..1837
                     /locus_tag="VGD38_12310"
     CDS             137..1837
                     /locus_tag="VGD38_12310"
                     /inference="COORDINATES: protein motif:HMM:TIGR00225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY0728848.1"
                     /translation="MKRIWAQLTVVLVICTLIIPGFVFAQQTQTPPGGTSSGRPGNGL
                     PNRRPPARGATAKTAEVERDFDEALKVVQEQYVDGRKLNYNDVFKSSIIGMLRSLDPH
                     SNYYDREEFEELKTDQRSEYYGIGASIQNYLYGDQVDTYITATFDGSPAQRAGLRYGD
                     RIVEVDGVKMSGKASIEVRDKIRGPRGSAVKLTLERAADKRVDTVSIVRDAVPQPSIP
                     DGYMLKPGVGYIDMTRGFNYTTTDELLDQLTKLHAKGMTSLVLDLRNNPGGFLDQAIH
                     VAEVFLRNGQLILTQKGRNGFRDNTYESRNNSPDMTPLVILINENTASASEIVAGAMQ
                     DHDRAVIVGQTSFGKGLVQSIIPLEYGAGLTLTSAKYFTPSGRLIQRDYTNGGFYDYY
                     THGAGVGRPAEPAKPTGPESRTDTGRAVYGGGGIAPDETVSARTTNLSQRRLLSPMFA
                     FSREFVNGRIRGFETNRSARINFEHELQPGELRITDAIYKAFRDFVTSDPKYKTSAAV
                     IDRYRPFVEMELRFNLVTASYGRVMGDRVFIMTDDPQVAKAVDVVPKARDLASAAGKR
                     "
     gene            1935..2366
                     /locus_tag="VGD38_12315"
     CDS             1935..2366
                     /locus_tag="VGD38_12315"
                     /inference="COORDINATES: protein motif:HMM:NF024252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY0728849.1"
                     /translation="MKRTNRPPKALVNTEELGRAVRRRREELGLSLRDVADKTSVSAS
                     TLSRIENGTGKPDADNIARLTAWLEVPVERILSARPSQDESSQAAVVYYPQEPVPEIV
                     EAHLRADRNLTPETASALSELFRVAYTQFSKNSDRPAKKRR"
     gene            2376..2969
                     /locus_tag="VGD38_12320"
     CDS             2376..2969
                     /locus_tag="VGD38_12320"
                     /inference="COORDINATES: protein motif:HMM:NF017885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HEY0728850.1"
                     /translation="MLGPLPPGEKWRNFELKAMALRDFARVRPDVSLNPFDLAQFANL
                     MVVEFEQLKGLSERAREHLLGPASEAWSGGACTLPDGMKLVILNPNHGAARTKATLME
                     EICHVFLAHQPNRLSVVTKDERGKVMNRDYRRADEEEAYGVGAAALVPYAALKRLLLQ
                     GKSSREIGVHFRVSRDLVEYRMKVTHLWRDFKDVAVE"
     gene            2978..>3729
                     /locus_tag="VGD38_12325"
     CDS             2978..>3729
                     /locus_tag="VGD38_12325"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEY0728851.1"
                     /translation="MSERLKEAAPELSTIDKLRMLHDITKKISRSLDLQEVLNLVMDT
                     LDSLIPYDAAGIFVLQCRGEECEFKSESVRGYDIDELSDLHLKLGEGFIGSVALSATP
                     IISPDVRNDPVYINARDKTRSEMVAPIISNDEVIGVIDLESDQFNAYSEDDLEVLMML
                     ASQVAIIIEKVMLHEQLIEKKRLEGQLEVARQVQLELLPPHDPEIAGYDISAYNFPTE
                     EVSGDYYDWVKIYEDQIAIVIADVAGKGVPAAL"
BASE COUNT          857 a         1089 c         1051 g          732 t
ORIGIN      
        1 cttacgattt gtctcatggg taggttcatt ctacggagcg ccggaaacaa aggtcaagca
       61 agagcacaac cttgcccgtc catccggcat ccgttatagt gcagccctga actgtcgcgg
      121 agcaaagagg ttagcagtga aaagaatttg ggctcaactc acagtcgtcc tggtcatttg
      181 taccctgatc attccggggt tcgttttcgc acaacaaact caaacgccgc cgggtggcac
      241 ttcaagcgga aggcccggca acggtttgcc caatcgcagg ccgccggcgc gcggtgcgac
      301 cgccaaaacc gccgaggtcg agcgcgattt tgacgaggcg ctgaaggtgg tccaggagca
      361 gtacgtcgac ggccgcaagc tgaactacaa cgacgtcttc aagtcgtcga tcatcggcat
      421 gctgcgttcg ctcgatccgc actccaacta ctacgaccgc gaagagtttg aagaactgaa
      481 aacagatcaa cgctccgagt actacggtat cggtgcttcg attcaaaact atctctacgg
      541 cgatcaggtc gacacctata tcaccgcgac tttcgacggt tctccggcgc agcgagccgg
      601 tctccgctat ggcgatcgca tcgttgaagt cgacggagtg aagatgagcg gcaaggcatc
      661 catcgaggta cgcgacaaga tccgcgggcc gcgtggttcg gccgtcaagc tcacgctcga
      721 gcgcgccgcc gacaagcgag tcgacaccgt aagcatcgtt cgcgacgcgg tgccgcagcc
      781 ttctattcct gacggttaca tgctgaaacc cggcgtcggt tatatcgaca tgacgcgcgg
      841 tttcaactac accacgacgg acgaattact cgatcagctc acgaagctcc atgccaaagg
      901 catgacgtcg ctcgtgctgg atctcagaaa caatccgggc ggttttctcg atcaggcgat
      961 tcacgttgcg gaggtgtttt tgcgcaacgg ccagttgatc ctgacgcaaa agggaagaaa
     1021 cggattccgc gacaacacct acgagtcgcg aaacaactcg ccggacatga cgccgctcgt
     1081 gattctcatc aacgagaaca cggcgtcggc ttcggagatc gtcgccggag caatgcagga
     1141 ccacgatcgc gcggtgattg tcggtcagac gagttttggt aaaggactcg tgcagagcat
     1201 catcccgctc gaatacggcg cgggcttgac gcttacgtca gccaagtact tcacgccttc
     1261 gggtcgcctg attcaacgcg attacacaaa cggcgggttt tacgattact acacgcacgg
     1321 cgcgggcgtc ggacgcccgg cagaaccagc gaaaccgacc gggcccgaga gccggacaga
     1381 caccggccgc gcggtttatg gcggtggcgg aatcgcaccg gatgaaactg ttagcgcacg
     1441 aaccaccaat ctctcgcagc gtcgtttgct gagtccgatg ttcgcttttt cgcgcgagtt
     1501 cgtgaatggc cgtattcgcg gctttgaaac gaaccgaagc gcgcgcatca acttcgagca
     1561 cgaacttcaa ccgggcgagc tcagaatcac cgacgcgatc tacaaagcgt ttcgcgactt
     1621 cgtgacgagc gatccgaagt acaagacttc ggcggccgtt atcgatcgct accgtccgtt
     1681 cgtcgagatg gaactgcggt tcaatctcgt cacggcttca tacggacgcg tcatgggcga
     1741 ccgcgtgttc atcatgacgg acgatccgca ggttgcgaaa gccgtcgacg ttgtgccgaa
     1801 agcgcgcgat ctcgcctcag ctgccggcaa gcgctaaaaa gaataggtcc tataagtcct
     1861 ataggaccta catcccgttt caagcataaa acagagtctt gcctctaaaa ccgctctgtg
     1921 atacgttcgc tcacatgaaa cgcaccaatc gaccacccaa agcactggta aacaccgagg
     1981 agttgggacg cgcggtgcgc cggcggcgtg aagaactcgg tctcagcctc cgtgatgtag
     2041 ctgataaaac ctcagtttct gcttccacgc tctcacgcat cgaaaacggc acaggcaaac
     2101 ccgacgcaga caatatcgcg cggctgacgg cgtggctcga agtcccggtc gaacgaattc
     2161 tcagcgcgcg cccgtcgcag gacgaatcgt cgcaagcggc tgtggtctat tacccgcagg
     2221 aacccgtgcc ggagatcgtc gaagcgcatc ttcgtgcgga tcgtaatctc acgccggaaa
     2281 ctgcttccgc cctttcggaa cttttccgcg tcgcgtacac gcagttcagt aagaactctg
     2341 ataggcccgc gaaaaagcgg cgttgacctc cggtgttgct cggtcctcta cctccaggcg
     2401 agaagtggcg taacttcgaa ctgaaagcca tggccctgcg cgactttgct cgcgttagac
     2461 cagacgtgtc tctcaatcct ttcgatctcg cccagtttgc gaacctcatg gtcgtcgaat
     2521 tcgaacagtt aaaaggactc agcgaacgcg cccgcgaaca cctgcttgga ccagcgtcgg
     2581 aagcgtggtc cggcggcgcc tgcactctgc ccgacggcat gaagctggtc attctcaatc
     2641 ccaatcacgg agctgcacgc accaaagcga cgttgatgga ggaaatctgt cacgtcttcc
     2701 tggcccacca gccaaaccgc ctctcggtcg tcactaaaga cgaacgcggc aaggtgatga
     2761 accgcgatta ccgccgggct gacgaagagg aagcctacgg cgtcggcgcc gcggccctcg
     2821 ttccttacgc cgcactgaaa agactcctgc tgcaaggcaa gagttcacgc gaaattgggg
     2881 tacactttcg cgtgagccgc gacctggtgg agtaccggat gaaagtgact cacctttggc
     2941 gggactttaa ggatgttgcg gtagaatagt tgcccagatg agcgaaagat tgaaagaagc
     3001 agcgccggag ctgagcacga tcgacaagct gcggatgctg cacgacatta ctaaaaagat
     3061 cagccgttct ttggacctcc aggaagtcct caacctggtg atggacacgc tcgactcgct
     3121 gattccttac gacgctgccg gtatttttgt gctccaatgc cgaggcgaag agtgtgagtt
     3181 caaatccgaa tccgtgcgcg gctacgacat cgacgagctc tcagacttgc acctcaagtt
     3241 gggggaggga ttcatcggca gtgtcgcact cagcgcgacg ccgataatct cgcctgacgt
     3301 gcgaaacgat cccgtctaca tcaacgcgcg cgataagaca cgttcggaga tggtcgcgcc
     3361 gattatttcc aacgacgagg ttatcggcgt catcgatctc gaaagcgatc agttcaacgc
     3421 gtattccgaa gacgatctcg aagtgttgat gatgcttgcg tcgcaggtgg ccatcattat
     3481 cgagaaggtg atgctgcacg agcagttgat cgagaagaaa cggctcgagg gtcagctcga
     3541 agtcgcgcgc caggtgcagt tggaactgtt gccgccgcac gatccggaaa tcgcgggcta
     3601 cgacatcagc gcttacaact ttcccaccga agaagtttcc ggcgattact acgactgggt
     3661 aaagatttac gaggaccaga tcgccatcgt catcgccgac gtcgcgggaa aaggtgttcc
     3721 cgccgcgct
//
LOCUS       DASWTX010000814         4126 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_34077, whole genome shotgun sequence.
ACCESSION   DASWTX010000814 DASWTX010000000
VERSION     DASWTX010000814.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4126
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34077"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1811
                     /locus_tag="VGD38_12330"
     CDS             <1..1811
                     /locus_tag="VGD38_12330"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CHAT domain-containing tetratricopeptide repeat
                     protein"
                     /protein_id="HEY0728852.1"
                     /translation="RWASYILNYTGQSYEDLNQPNRAVRDYQQALVLAQRSADPESEI
                     LSYYNLAHLERGRGNLDEAKRHIEKAIRIAEDVRTKVSSQDLRSTYFATVRDSYDLYI
                     DVLMLQHKRDPTSGFDREAFAVSERARARSLLEMLRRSQTNARNAFDSLPQPLTLKQT
                     QERILNDETSLLEFALGNERSYAWLVTKNNFFSFTLPGRAGIEKSAKGLYQVFVDHQL
                     VQGESTEARAQRETKAAAALPGEIVSLSKLLLAPLAGKLNTKRLLVVPDGALQYIPFQ
                     VLLHPDSHEPLIRHHEIVNEPSASTLALVLSEIRTRQTAANLVAVLADPVFETNDSRV
                     KRDATRRLDQPAEMLAVRRALRDVGITPDGLQIPRLLASGREADEIMALAPGRSNLKA
                     VGFAATRDRIFSADLASYRIVHIATHGIINNEHPEESGIVLSLVDQQGQSQDGFLRLR
                     DIYTLKLPADLVVLSACSTALGKDVRGEGLIGITRGFMYAGAAGVVASLWKVDDEATA
                     ELMKHFYVALFNKGLPPAAALRDAQLELAKHPRWQSPYYWAGFVIQGQYDQKEKFSQS
                     PVGRTDVAVLAVLGGSLLLVPIVFHNLRRRRARGNE"
     gene            1912..2358
                     /locus_tag="VGD38_12335"
     CDS             1912..2358
                     /locus_tag="VGD38_12335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728853.1"
                     /translation="MIKYFVVRAPCDAEDLADETINRVSSRLDHIKVQVNGERTRYFF
                     GVARKVHLEYLRRKTPHAPEEHTIDSERLEAEYRCLEECIGKLSAENRNLVLRYYQAD
                     GRQKIEERKQLADELGIAPNALRIRAYRIRAALQKCLEKCVEDSLR"
     gene            2425..3273
                     /locus_tag="VGD38_12340"
     CDS             2425..3273
                     /locus_tag="VGD38_12340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728854.1"
                     /translation="MPKVSEQEIRSYLLGGLSPERQTELAAEIHNDAQLQEELLAFKE
                     ELFDLYLAGSLNADEQQYFQTHFLSSESGQQKLHFARLLRNYRDGYLQQESIVEDRVP
                     APITPAPVTGPSAWMPNLHRTPAYALSMVLVAGFLVTLVVWVYVRKSPATPTTTRTAS
                     LTLTAGATRSGGSITELRAPAENDEVKVELEVAKPDFKRYKTQLFRENQALASQEELP
                     IVSRHTHYVVPVTFTGNLLTPGDYQLKLSGVADSGQPEFINSYSFRVTAEGGPDPDQE
                     RNQLAR"
     gene            complement(3457..>4126)
                     /locus_tag="VGD38_12345"
     CDS             complement(3457..>4126)
                     /locus_tag="VGD38_12345"
                     /inference="COORDINATES: protein motif:HMM:NF042637.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6569 family protein"
                     /protein_id="HEY0728855.1"
                     /translation="PRSGRMPIAAFCVESGRWGKRGEEQAAYFSSSDNAAATKELKLA
                     AKVAGSQDAVWQNVTVAQDKLSENVAEVVNVSSSPTSLALSVETVKVKETTAAYINAL
                     SGVLRNKPDVIGFAFAINGKVNSADVYASHALFAKLWPKLLKATATEALAELDQKPAA
                     EPVASETIQEFLADSEQPKPKAKEVTQRVRVVTREDDQNIFFETQDRREKDAWVHRNY
                     IRKQ"
BASE COUNT          926 a         1205 c         1123 g          872 t
ORIGIN      
        1 agcgctgggc ctcgtacatc ctgaattaca ccgggcagtc gtatgaagac ctgaaccagc
       61 caaaccgcgc ggtccgtgat taccagcagg cgctcgtgct ggcccaacgt tcggccgatc
      121 cggaaagcga gatactcagc tattacaacc tggcccatct cgaacgcggc cgcggcaatc
      181 tcgacgaagc gaaacgccat atcgaaaagg caatcaggat cgccgaggac gtacggacca
      241 aagtttccag ccaggactta cgctcgacgt acttcgctac cgttcgcgac agttacgatc
      301 tttacatcga cgtgctgatg ctccagcaca aacgcgatcc aacctcagga ttcgatcgcg
      361 aagcattcgc cgtgagtgaa cgggcccgcg cgcggtcgct gttggagatg ttgcgccggt
      421 cgcagacaaa cgctcgcaat gccttcgatt ccctgcctca acctctgacg ctcaaacaaa
      481 cacaagaacg tattctgaac gacgaaacgt cgctactcga attcgcgctc ggaaacgaac
      541 gcagctacgc atggctcgtc acgaagaaca acttctttag tttcaccctg ccgggccgcg
      601 cgggaatcga gaagtcggcg aagggtcttt accaggtgtt cgtggaccac cagttggtgc
      661 agggcgaatc aaccgaagca cgagcacaac gcgaaacgaa agccgcagcc gccttgccgg
      721 gagagatcgt ctcactcagc aaactcctgc tggcgccact cgccggcaag ctcaacacca
      781 aacgtttgct cgtggttcct gacggcgcgt tgcaatacat tccgtttcaa gtgctgctcc
      841 atcccgactc gcacgagccg ctgatcaggc accacgagat cgtcaacgaa ccgtcagctt
      901 cgacactcgc gcttgtcctg tcagaaattc gcactcgcca aaccgccgcg aatctcgtcg
      961 ccgttctcgc cgatccggtt ttcgaaacca acgactcgcg cgtgaagcga gacgcgactc
     1021 gcaggttgga ccaaccggcc gagatgctcg ccgtgcgccg cgctctgcgc gacgtgggta
     1081 tcacgcccga tggactgcaa attccaagac tcctcgcttc gggacgcgaa gccgacgaga
     1141 tcatggccct cgcacccgga agaagtaact tgaaagccgt gggcttcgcc gccactcgcg
     1201 atcgcatttt cagcgccgac ctcgcgagct atcgcatcgt ccacatcgcc acgcacggaa
     1261 tcatcaacaa cgaacatccg gaagaatccg gcatcgtgct gtcactcgtg gatcaacagg
     1321 ggcaatcaca ggatggtttc ctgcgcctgc gtgacattta cacgttgaaa cttccggctg
     1381 atctggtcgt gttgagcgcc tgcagcacgg cgctgggcaa agacgtccgc ggcgaaggtt
     1441 tgattggtat aacgcgcggt ttcatgtacg ccggcgcggc cggagtggtc gcctcgctgt
     1501 ggaaagtgga cgacgaagcg acggctgaat tgatgaaaca cttttacgtg gctttgttta
     1561 acaaaggcct gccgccggcc gccgctttga gagacgcaca actggaactc gcgaaacacc
     1621 ctcggtggca atcgccatac tattgggccg gtttcgtgat tcagggccag tacgatcaga
     1681 aggagaagtt cagccaatcc ccggtcggca gaactgacgt tgccgtcctc gcggtcctcg
     1741 gcggatcact tctcctcgtt cctattgttt ttcacaactt aagacgacgg cgcgccaggg
     1801 gtaatgaata agaactgggt catgtctcaa gaatcgttcg aggatctcct cgactggctt
     1861 gacccaaatc gtgaccacgc tgcccttaag tacgagcaaa tcagggccgg cttgatcaag
     1921 tacttcgttg ttcgcgcgcc gtgcgatgct gaagatctgg ccgacgagac catcaatcgc
     1981 gtcagcagcc gtctcgacca catcaaggtc caggtgaacg gggaacggac ccggtatttt
     2041 ttcggagttg cgcgcaaggt ccatttggaa tatttaagga gaaagactcc tcatgctccc
     2101 gaagagcaca cgattgactc tgaaaggctg gaggcggaat accggtgtct cgaggagtgc
     2161 atcggcaagt tgagcgcgga gaaccggaat ctggtcctgc gttactacca ggcggatggc
     2221 cggcagaaga ttgaagaaag aaaacagctc gcggatgagt tgggaatcgc acctaacgcc
     2281 ttgagaatca gggcctaccg cattcgtgcg gcgctgcaaa agtgcctcga gaagtgtgtt
     2341 gaagactctt tacggtgaaa tactcgccct gttttagtca ttaggattag aggcggtttt
     2401 cttacggaga cacaaagaca actaatgcct aaggtttctg aacaagagat acggagttat
     2461 ctgctcggtg gactgtcgcc cgagcggcaa acggagctgg cggcggaaat ccacaacgac
     2521 gcccagcttc aggaagaact cctcgccttc aaagaagagt tgttcgatct atacctcgcc
     2581 ggtagtttga atgcagacga acaacagtat ttccagactc actttctgag ttcggagagc
     2641 gggcaacaga agttgcactt cgcccgcctt ctccgaaatt accgcgacgg ttatcttcaa
     2701 caagagtcaa ttgtggaaga ccgcgttccc gcgccaataa ctcccgcacc cgttactggt
     2761 ccttcagctt ggatgccgaa cttacaccgg actccagctt atgcactttc aatggtcctc
     2821 gttgccggtt tcctggtaac actggttgtc tgggtttacg tgaggaagtc gccggcaacg
     2881 cccacgacta caaggacagc atcactgacg ttaacggccg gtgcgacccg gtcgggcggc
     2941 agtatcacag agctgcgtgc tccagcagaa aacgacgaag tcaaagtcga gctggaagtc
     3001 gccaaaccgg acttcaaaag atataagacc caactatttc gcgagaacca ggctctcgcc
     3061 tcacaggagg aactacccat cgtctcgaga cacactcact acgtcgtgcc cgtcactttc
     3121 accgggaacc ttctcacgcc gggtgattac cagttgaaac tatccggggt ggcggattcg
     3181 ggccagcctg aattcatcaa cagctactcg tttcgcgtca ccgcggaagg cggcccggac
     3241 cccgaccagg agcgcaatca attggcccgt taaatttttc tgaaatgttt cccactacaa
     3301 cgtcatagat attgaagtgg aatttatggt gaatttaccc cacgcaacgt aaacgcctca
     3361 caaccctcca tgcgtagttt gcatgcctca tggagaacgg ccagcgactg attagtggtt
     3421 gcagtcgctg gccgattttc ctggtcccta actggtctac tgctttcgga tgtagttgcg
     3481 atgcacccac gcatcttttt cgcggcggtc ctgcgtctcg aaaaagatgt tctggtcgtc
     3541 ttcacgggtg accactcgca cgcgctgcgt cacttccttc gctttcggct tgggctgttc
     3601 tgaatcggct aggaactcct ggatcgtttc actcgcaacc ggctcggcgg cgggcttctg
     3661 atccagttcg gctagcgcct cggtcgcagt ggctttcaac agcttcggcc agagtttggc
     3721 aaagagtgcg tgcgacgcgt agacgtcggc gctgtttact ttgccgttaa tcgcgaacgc
     3781 aaagccgatc acgtcgggct tgtttcgcaa aacaccgctg agcgcgttga tgtaagccgc
     3841 tgtggtttct ttgaccttca cagtctcgac cgacagcgcg aggctggtcg gcgaggaaga
     3901 cacgttgacg acttcggcaa cgttctcgct caacttgtct tgtgcgacag taacgttttg
     3961 ccaaacggca tcctgcgaac cggcgacctt agccgcgagc ttcagctctt tcgtagcggc
     4021 ggcgttatca gagctgctga agtatgcggc ctgctcttcg cctcttttgc cccagcgtcc
     4081 tgactcgacg caaaaggcgg cgattggcat gcgtccggaa cgtggc
//
LOCUS       DASWTX010000815         1776 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_164898, whole genome shotgun sequence.
ACCESSION   DASWTX010000815 DASWTX010000000
VERSION     DASWTX010000815.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1776
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164898"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1367)
                     /locus_tag="VGD38_12350"
     CDS             complement(<1..1367)
                     /locus_tag="VGD38_12350"
                     /inference="COORDINATES: protein motif:HMM:NF012686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter family protein"
                     /protein_id="HEY0728856.1"
                     /translation="MKLVTVDWLIIAAYFLLSLAIGLYYARRAGRSTEEYFLSDRSMP
                     WWLAGTSMVATTFAADTPLAVTEMVARNGVAGNWLWWSLLASGMLTVFFFARLWRRAR
                     VMTDVEFVELRYSGKPAAFLRGFRALYLGLPINLIIMGWVNLGMAKVMSGTLGLAKWQ
                     ALALCLGITFIYSILSGFWGVVVTDAVQFVIAMVGSIALAVFAVKAVGGLENLKTRLA
                     GVTPVGSTEPFGAGGAIQLLPDGTALWMLPLLTLAVYLGVNWWASWYPGAEPGGGGYV
                     AQRIFSAKNEKHGLLATLWFNVAHYALRPWPWIVVALCSLVLYNGTTLNPETGKPDPA
                     FGYVQVMNDYLPIGFRGLLLASFAAAYMSTIATQMNWGASYIINDFYRRFVKTQASEK
                     HYVFASRMATLIIVLLSIVVTYYMNQITSGWELVLALGAGTGLVYILRWYWWRVNAWS
                     EVAAMS"
     gene            1540..>1776
                     /locus_tag="VGD38_12355"
     CDS             1540..>1776
                     /locus_tag="VGD38_12355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728857.1"
                     /translation="MSGEYLLAGLALIGIVIVVSALLSGLIDRSGLPQVAVFICIGAA
                     LGPAGLGVFNTTLDSPVLRVVATLSLTLVLFTDAV"
BASE COUNT          430 a          523 c          484 g          339 t
ORIGIN      
        1 gacatggccg caacttccga ccaggcattc acccgccacc agtaccagcg caggatgtac
       61 acgagtcccg tgcctgcgcc aagcgcgagc accaactccc aaccgctggt aatttgattc
      121 atgtagtaag taacgacgat cgacaggagc acgataatca gggtcgccat tcttgaagcg
      181 aatacgtagt gcttttcgct ggcttgggtc ttaacgaagc gccggtagaa atcgttgatg
      241 atgtaactcg cgccccaatt catctgtgtc gcgatcgtgc tcatgtaagc ggcggcaaaa
      301 gatgcgagca acagaccacg aaagccgatg ggcaggtaat cattcatgac ttgaacgtag
      361 ccaaaagcgg gatctggttt accggtttca ggattcagag tggttccgtt gtaaagcacg
      421 agcgaacaga gtgcgacaac gatccatggc cacggccgca aagcgtaatg cgcgacgttg
      481 aaccagagcg tcgcgagtaa gccgtgcttt tcgtttttcg cggagaagat gcgttgcgcg
      541 acgtaaccac cgccgcccgg ttctgcaccg ggataccacg aagcccacca gttcacgcca
      601 agataaacgg ctagcgtcaa caacggcagc atccacagtg ccgtcccatc cggtagcagt
      661 tgaatagccc ctccggctcc gaacggttcg gtcgatccca ccggagtcac gcctgccagc
      721 cgcgtcttga gattctcgag acctccgacc gccttaaccg caaacaccgc gagcgcgatc
      781 gagccaacca tcgcgatcac aaactgaacg gcgtcagtga caaccacgcc ccagaaacca
      841 gacaggattg agtagataaa cgtgatgccg agacagagtg cgagcgcctg ccatttcgcg
      901 aggcccaacg tgccgctcat taccttcgcc atgccgaggt ttacccaacc cataatgatc
      961 agattgatag gcaagccgag atatagcgct cgaaacccgc gcagaaaagc agcaggcttg
     1021 ccggagtaac gcagctcgac aaactccacg tcagtcatca cgcgcgcacg gcgccacaaa
     1081 cgtgcgaaga aaaagacggt gagcatgccg ctcgccagca aggaccacca aagccagtta
     1141 ccggcgacac cgttgcgcgc caccatttca gtcacggcga gcggtgtatc agccgcaaac
     1201 gtagtcgcta ccatcgacgt acccgcaagc caccagggca ttgaacggtc ggacagaaag
     1261 tattcttccg tagatcgacc agcgcggcgt gcgtagtaga gaccaatagc caacgacagc
     1321 agaaagtaag ccgcaatgat caaccagtcg acagtgacaa gcttcatggg gtcaccccac
     1381 ctttaaattc tcgattgaag gacgttgcgt gcgcgctaat ctcacggcat tcggggactt
     1441 ctgtcaagtg gaaaaacaaa gtaccctctt ttcgggcaaa gctggcaatg ctttccaaaa
     1501 gcgagcgtta acgattaccc ttgcgtcact tctacaagca tgtcgggtga atatttacta
     1561 gcgggtctgg cgctgatcgg cattgttatt gtcgtgtcgg cgctgctgtc ggggctgatc
     1621 gatcgcagcg gtttgcccca ggtggcggtg tttatctgca tcggcgcggc gctcgggcct
     1681 gccggactcg gtgtcttcaa caccacgctc gattcgccgg tgctgcgcgt tgtggccacg
     1741 ttgagcctga cgctggttct gttcactgac gcggtc
//
LOCUS       DASWTX010000816         5146 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_296363, whole genome shotgun sequence.
ACCESSION   DASWTX010000816 DASWTX010000000
VERSION     DASWTX010000816.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5146
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296363"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            114..458
                     /gene="rbfA"
                     /locus_tag="VGD38_12360"
     CDS             114..458
                     /gene="rbfA"
                     /locus_tag="VGD38_12360"
                     /inference="COORDINATES: protein motif:HMM:TIGR00082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEY0728858.1"
                     /translation="MHRTERFTDTLREEIAQIVGYELEDPRLNTVTVTDVRLSSDKRA
                     ARVYVTVAGDEAEHKSALNALKHAAPYVRKQLGLSLNLPRTPELHFVRDRVEEQGDRV
                     DQLLREIEAKKE"
     gene            490..1491
                     /locus_tag="VGD38_12365"
     CDS             490..1491
                     /locus_tag="VGD38_12365"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF013528.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008441 - 3'(2'),5'-bisphosphate
                     nucleotidase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional oligoribonuclease/PAP phosphatase
                     NrnA"
                     /protein_id="HEY0728859.1"
                     /translation="MLSQVVELIEAKRRFAITSHIRPDGDSLGSSLGLYWLLRALDKD
                     VEVIMRDPVPHAYQQLPGAADVRVTPGVDPGYHAVFVIECSDITRPGLIDLEKQFVVN
                     IDHHSTTALFGSINWIDSTASAVGEMIYNLCKATGVRVTKEIAECVYTALITDTGSFH
                     YSNTTERTFKVASELVRTGVKPAKTAEAVFASYPWSRIELMGAVLSTARRDESGRVAC
                     MRQSLEMARQARASDEDADGFVNYPLTVGEVEAVALLKECEPGVYRTSLRSKGDVNVA
                     KVAEKFGGGGHRNAAGCTLRGSWEEAETVIVGLLQEAVRRADRLNDITEDALKESVA"
     gene            1501..2073
                     /gene="cobO"
                     /locus_tag="VGD38_12370"
     CDS             1501..2073
                     /gene="cobO"
                     /locus_tag="VGD38_12370"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: protein motif:HMM:NF004637.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HEY0728860.1"
                     /translation="MKEKKYKWRREDYQENTRGLLMVHTGNGKGKTTCALGLMMRAAG
                     RGLNCCMIQFMKSRNDRYGEHESAEKLGIEVHTMGDGFTWDTKNPEQDIKTARETWAL
                     CVEKLRSGDYDMLVFDELVYVLSYKMLPVEEVVAEFRAIRAAQPALHIIVTGRDAPPE
                     LIEAADLVTEMTEIKHPFAAGIRAQQGIEF"
     gene            2070..2606
                     /locus_tag="VGD38_12375"
     CDS             2070..2606
                     /locus_tag="VGD38_12375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728861.1"
                     /translation="MNHRYTLRYTAAMLLVLVTAAFTGAANQAVTETNLSGTWASDDG
                     TTLVITQQGPEIRIKETRKAGVWELAYFADERGETHPARGENGELQSVTKWSKGILIV
                     TYSLPATRNSRYPVKNERIDTWGLSRDGKKLTHTRSFTHSPATLDPSSNPGAAPRGPA
                     INSAPISWKEKRTFKKVS"
     gene            2667..3575
                     /gene="accD"
                     /locus_tag="VGD38_12380"
     CDS             2667..3575
                     /gene="accD"
                     /locus_tag="VGD38_12380"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HEY0728862.1"
                     /translation="MAWFSKKNKRIEAVPPEERVVKTENVFVKCDGCEAHLFKGELDD
                     NFQVCKHCSHHFRIGARERLSLLFDEGKYEELDTEVVSIDPLEFVDSKPYSKRIEQAK
                     NSTGLPEAVINGRGTVGDHPVLCSAMDMSFIGGSMGSAVGEKVTRLIERAMREHSAVV
                     IFSASGGARMQEGTLSLMQMAKISAALAALDEARLPFISVLTDPTTGGVTASFAMLGD
                     VIIAEPKALIGFAGPRVIEQTIRQKLPKDFQRSEFLLDHGMVDAIVDRRELRKEIIKL
                     LNFMMNPEIHGESDIERARRRAASRG"
     gene            3594..4847
                     /locus_tag="VGD38_12385"
     CDS             3594..4847
                     /locus_tag="VGD38_12385"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004326 - tetrahydrofolylpolyglutamate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008841 - dihydrofolate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="folylpolyglutamate synthase/dihydrofolate
                     synthase family protein"
                     /protein_id="HEY0728863.1"
                     /translation="MQFDEAVQYLLGLGHETLAIKLGLRNTELLLEALDNPQRAYTVV
                     QIAGTNGKGSTAAMLDSICRAAGIKTGLYTSPHLVSITERIRISGAEITQEDFARHAT
                     TVRAVAEDLLERRHIEALPTFFEHVTAIALVAFREAGVELAILETGLGGRLDSTTAAG
                     ASIVGITQIAMDHEEYLGPTLTSIASEKAAVIRPGVTAVIGAQSPEALEVLLKRCEAV
                     GVQPSLDPGRDFAEKITLSLRGAHQIENASIAVRLAKALRLHGSLGLHGFTITDEQIG
                     LGLATATHAGRLELIPPFLLDGAHNPAGAQALRDYLDEFHNGPLTLIFGAMRDKKLDQ
                     LAEILFPIPDLLILTTVNNPRSATVETLASLAHRTVIKTASSAEALRVAIAQTPKDGL
                     ICVTGSLYLIGETRPMILKLTEQPA"
     gene            4844..>5146
                     /locus_tag="VGD38_12390"
     CDS             4844..>5146
                     /locus_tag="VGD38_12390"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEY0728864.1"
                     /translation="MTTPHHELPQIISSQKTFSGRVFSVTVDTVREGELTYQREVVHH
                     GGSAVIVPVFDDGTVALVRQYRHPAVRYLLEVPAGTLDDGERPDQGAERELQEELGL"
BASE COUNT         1144 a         1406 c         1578 g         1018 t
ORIGIN      
        1 agaatttcaa cgacgtgaaa gtcggcgacc agattgaagc gtacgtggtg gagcgcgtcg
       61 cggcgacgga gttgtaatag gtcctatagg acgtattaga cctattttgt tttatgcatc
      121 ggacggagag atttaccgat acgttgcgcg aggagatcgc gcagattgtt ggttacgagc
      181 tggaagatcc gcgattgaac accgtaaccg taactgatgt tcgtctctcc tccgacaaac
      241 gcgcggcgcg cgtttacgtc acggtggctg gagatgaagc ggaacataaa tcggcgctga
      301 atgctctgaa gcacgcagcg ccctatgttc gcaagcaatt gggactctcg ttgaatctgc
      361 cgcgcacgcc tgagctgcac ttcgtgcgcg atcgcgtcga ggaacagggc gaccgagtcg
      421 atcagttgct cagagagatt gaagcgaaga aggagtaagt ttttgagctg cggctcaaat
      481 tgaagaaaca tgcttagtca agtagtcgag ctgatcgagg caaaacgccg tttcgcgatc
      541 acctcacata ttcgcccgga tggtgacagc ctcggatcat cgctcggttt gtattggttg
      601 ctgcgtgcac tggacaagga cgtggaagtt atcatgcgcg atccggtgcc gcacgcttat
      661 cagcaactgc ccggcgccgc tgacgttcgc gtgacgcccg gcgtcgatcc cggttaccac
      721 gcagtgttcg ttatcgagtg ttccgacatc acgcgtccgg gattgatcga tctcgagaaa
      781 cagttcgtcg tcaatatcga tcaccactcg acgacggcgc tcttcggcag catcaactgg
      841 atcgactcga ccgcgtccgc ggtcggggaa atgatctaca acctgtgcaa agccaccggc
      901 gtgcgtgtga cgaaagagat cgccgagtgt gtctacacgg cgctgatcac cgacaccgga
      961 tcgtttcact actcgaacac gaccgagcgc acgttcaaag tcgcttcgga actggtccgc
     1021 accggtgtga agccggcgaa gaccgcggaa gctgtgtttg cgagttatcc gtggagccgg
     1081 atcgagttga tgggcgcggt gctttcgacg gccaggcgcg acgagagtgg acgcgtcgcg
     1141 tgcatgcggc agtcgctcga gatggcgcgt caggcacgtg cgtcggatga agacgcggac
     1201 gggtttgtta actatccgtt gactgtcggc gaagtcgaag cggtggcgtt gctgaaggaa
     1261 tgcgagcccg gcgtttatcg cacgagcctg cgttcgaaag gtgacgtgaa cgtggcgaag
     1321 gtcgcggaga agtttggcgg cggtggtcat cgcaacgccg cgggttgcac gctgcgcgga
     1381 agctgggaag aagctgaaac ggtgattgtc ggtctgttgc aggaagcggt taggcgcgcc
     1441 gaccgattga acgacatcac tgaagacgcg ctgaaggaat ctgtagcgta ggcgccggaa
     1501 gtgaaagaga agaagtacaa gtggcgccgc gaagattatc aggagaacac gcgtggactc
     1561 ctcatggtcc acaccggaaa cggtaaaggc aaaaccacct gcgcgctggg cctgatgatg
     1621 cgcgccgccg gacgcggctt gaactgctgc atgattcagt tcatgaagtc gcgcaacgat
     1681 cgttacggcg agcacgagtc cgcggagaag ctcggcatcg aagtccacac gatgggcgac
     1741 ggcttcacgt gggacaccaa aaatcccgaa caagacatca aaacggctcg cgagacgtgg
     1801 gccttgtgcg tcgagaaact gcgctccggc gattacgaca tgctcgtgtt tgacgagctg
     1861 gtctacgtgt tgagctacaa gatgttaccg gtcgaagagg tggtcgcgga atttcgcgcg
     1921 atccgggcgg cgcaaccggc gttgcacatc atcgtgacgg gccgcgatgc tccgccggag
     1981 ctcatcgaag ccgccgatct cgtgacggag atgacggaaa taaaacaccc gttcgcggcc
     2041 ggaattcgcg cccaacaagg aatcgagttt tgaaccacag atacacactc agatacacgg
     2101 cagcgatgtt gttggtcctg gtgacggccg cttttaccgg agccgctaac caggcggtca
     2161 cggaaactaa cctgagcggc acctgggcgt ctgacgatgg aacgactttg gtgattacgc
     2221 aacagggacc ggagatcaga atcaaagaaa cgcgaaaggc cggcgtttgg gagttggcct
     2281 acttcgcaga cgaacgtggc gagacccatc cggcacgagg cgaaaacgga gaactgcaat
     2341 ccgtcacgaa gtggagcaag ggcatcctca ttgtcacgta ttctttgccg gcgacccgaa
     2401 acagccgata tccggtcaaa aacgaacgca tcgacacgtg gggtctgtcg cgcgacggca
     2461 agaaattaac tcatacgagg tcctttactc actcacctgc caccctggat cccagtagta
     2521 atccgggcgc agcaccccga ggcccagcca ttaacagtgc tccgataagt tggaaggaaa
     2581 agcgaacgtt caagaaagtc tcctaacgcg cgcaggccgc ggattcgaaa tcgtccggcc
     2641 tttgtgctac ccttcccgcc attcttatgg cttggttcag taagaaaaat aagcgcatcg
     2701 aggccgttcc gccggaagag cgggtggtga agaccgaaaa cgtcttcgtc aaatgcgacg
     2761 gctgcgaggc gcacctcttc aaaggcgaac tggacgacaa cttccaggtc tgcaaacact
     2821 gtagccatca ttttcgcatc ggcgcccgcg agcggttgtc gctgctgttt gacgaaggca
     2881 agtacgaaga gctcgacacc gaggtggttt cgatcgatcc gctggagttt gtcgacagca
     2941 agccatattc aaaacgtatc gaacaggcga agaattcgac tggtctaccg gaagcggtga
     3001 tcaacgggcg cggcacggtc ggcgatcatc cggtgctgtg cagcgcgatg gacatgtcgt
     3061 tcatcggcgg ttcgatgggt tcggctgtgg gtgagaaagt cacgcggctg atcgagcgtg
     3121 cgatgcgcga gcacagtgcg gtggtgatct tttctgcgtc tggtggcgcg cgcatgcagg
     3181 aaggcacgtt gtcgttgatg cagatggcga agatctccgc ggccctcgcg gcattggatg
     3241 aagcgcgtct gccgtttatt tcagtgttga ctgatccgac taccggtggt gtgacggcga
     3301 gtttcgcgat gcttggcgac gtgatcatcg cggagccgaa ggcgttgatt ggttttgctg
     3361 gtccacgcgt gatcgagcag accatccggc aaaaacttcc gaaggacttt caacgatcgg
     3421 agtttctgtt ggaccacggc atggtcgacg cgattgtcga tcggcgcgag ctgcgcaaag
     3481 agattatcaa gctgttgaat ttcatgatga atcctgagat tcacggcgaa tcggacatcg
     3541 aacgcgcacg gcggcgtgcg gcctcaagag gttaaagcac ggaatgtggg tggatgcagt
     3601 ttgacgaagc ggttcagtat ctcctcggtc tcgggcatga gacgttagca atcaagctgg
     3661 gcctcagaaa caccgaactc ctcctcgaag cactcgacaa tccccaacgc gcatacaccg
     3721 ttgttcagat cgccggaacg aacggtaaag gttcgacggc ggcgatgctg gattcgatct
     3781 gccgcgcggc gggaatcaaa acgggtctct acacttcccc gcatctcgtg tcgatcactg
     3841 aacgtattcg catttcaggt gctgagataa cgcaggaaga ttttgcgcgt catgccacga
     3901 ccgtgcgcgc agttgcggaa gatctgcttg agcgccgcca catcgaagcg ctgccgacgt
     3961 ttttcgagca cgtgactgcg attgctttag tcgcgtttcg tgaagcgggg gttgaactgg
     4021 caattctcga aacggggctt ggtgggcggc tcgattcgac gacggcggct ggtgcgtcga
     4081 tcgtcggcat cacgcagatc gcgatggacc acgaagagta tcttggccca acgctcacga
     4141 gcatcgcgag tgagaaagcg gctgtgattc ggcctggtgt gactgcggtg attggtgcgc
     4201 agtcgccgga agcgctcgag gtgttgttga aacgctgtga agcggtgggc gtccaaccgt
     4261 cactcgaccc gggccgggat tttgcggaaa aaatcacgtt gagcttgcgc ggcgcgcacc
     4321 agattgaaaa cgcatcgatc gcggttcgtc tggcgaaggc gctaagactt catggctcgc
     4381 taggcctgca tggcttcacg atcactgacg aacaaatcgg cttgggcctt gccacggcca
     4441 cgcacgcagg ccgtctggaa ctaatccctc ctttcctact cgacggtgcg cacaatcccg
     4501 ccggagctca ggcgttgcgc gattatctcg acgagtttca caacggcccg ttgacgctca
     4561 tcttcggcgc gatgcgcgac aagaagctcg atcagctcgc tgaaatcctg tttccgattc
     4621 ccgaccttct catattaacg acggttaaca atccccggtc cgctacggtc gaaacattgg
     4681 cgtcgctcgc gcacagaacc gtgatcaaaa ccgcctccag cgccgaagcc ctgcgcgtcg
     4741 ctatcgctca gacaccaaaa gatggtttga tctgtgtcac cggatcgctc tacttgatcg
     4801 gcgagacacg ccccatgatt ctgaaattaa cggaacaacc agcatgacaa cgccacacca
     4861 cgaactgcca cagatcatca gcagccaaaa aacgttctcc ggccgcgtgt tcagcgtgac
     4921 cgtcgacacc gtccgcgaag gcgagctcac gtaccagcgc gaagtggtcc atcacggcgg
     4981 cagcgccgtg atcgtgcccg tcttcgacga cggcaccgtc gcgctcgtca ggcagtatcg
     5041 tcatccggca gtgcgctacc tgctggaagt tcccgccgga actctcgacg acggcgaacg
     5101 tccggaccaa ggcgccgaac gcgaacttca ggaagagctc ggcctg
//
LOCUS       DASWTX010000817         3773 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_384318, whole genome shotgun sequence.
ACCESSION   DASWTX010000817 DASWTX010000000
VERSION     DASWTX010000817.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3773
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384318"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            291..857
                     /locus_tag="VGD38_12395"
     CDS             291..857
                     /locus_tag="VGD38_12395"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0728865.1"
                     /translation="METLGSDEIIVERALSGEPDAFGEIVRRWERRIFALTYGMLGRE
                     EDARDATQETFLAAFRNLRGFRGEAKVSSWLHRIAVNQCITRQRRATVRNESALDDDE
                     TTANTFAAPLEASPATITEGRQRSVAVRRALNSLPVELRQVVVMKEFEELTFREISEA
                     LDLPLSTVKSRLYTGLKQLQMRLEKFAA"
     gene            1324..1962
                     /locus_tag="VGD38_12400"
     CDS             1324..1962
                     /locus_tag="VGD38_12400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728866.1"
                     /translation="MNEMDLSSTCERAEELVSVLYGEAGESERRDFEVHMQQCGNCRA
                     EFAAFAQVRESIGEWRDEALAGFVSAHANVPPLRKSALAALRQFFDLSPLWLKGAIGF
                     AAVVFCVLAAFAVWRSGSTDPVYTKQDLDRAVQEALAKQQREQPRDVPDKPALIVESP
                     KPKSSNIAKSEPKARRPFSKAERAQLAAELRLITSDDETDLDLLDDRINRQR"
     gene            1965..2420
                     /locus_tag="VGD38_12405"
     CDS             1965..2420
                     /locus_tag="VGD38_12405"
                     /inference="COORDINATES: protein motif:HMM:NF019430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic heavy metal sensor"
                     /protein_id="HEY0728867.1"
                     /translation="MKILLSLILVLTAASFVMAQQEPGETMDPIEQLRLTPDQRQAVR
                     RIVADTRLERQSTNRRLREANVALDQALDNEPTDENLIEQRINEVAAAQAAQLRLRIH
                     TEMRIRRLLNPEQLATLRRLRLQLRDVMAPQRMNNQRRPTPQQGLRPRP"
     gene            2569..3333
                     /locus_tag="VGD38_12410"
     CDS             2569..3333
                     /locus_tag="VGD38_12410"
                     /inference="COORDINATES: protein motif:HMM:TIGR00056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0728868.1"
                     /translation="MNFATRALLELQETTLLAARAVRGLFKRPRYIPEMIAQMDAIGV
                     GSLTIIILTGFFTGGVLTVQTFPTLKAYGAQSQTGYLVAVSLVRELGPVLCALMVTGR
                     VGSAISAELGSMVVSQQIDAMRALGTDPIRKLVAPRLWALLVSLPLLTVLADVLGIFG
                     GWVTAVALYSVSSSVFISAVRDGITTDDLIGGVVKPLVFSLIIGTIACRQGLSTEGGT
                     VGVGRSTTRAVVMASIMVIIADYFLAKALQVILGTT"
     gene            3352..>3773
                     /locus_tag="VGD38_12415"
     CDS             3352..>3773
                     /locus_tag="VGD38_12415"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY0728869.1"
                     /translation="MATEIHTTSPTVSEDAQESTFREVDDRDRAIPAIEFRDVVLAFD
                     ERVILDHLSFKVMKGETKIILGGSGGGKSTIIKLVLGLLKPDAGQVLVDGEDITDYSE
                     EQMMRVRKNIGMVFQEGALFDSLSVYDNVAYRLHEQGVP"
BASE COUNT          763 a         1092 c         1177 g          741 t
ORIGIN      
        1 gcccgcgaaa gcgagcggcg ccaggccgac caggagcaat acacccagca cgatgtagag
       61 gagacggatt cgtccgagtt tttcgagcat tcgttaactt aggcggtaca atcgcggcag
      121 gtcttcgggt tctgggaagg cttccgggtt tcttccgagc gcgccgctcg gcccgcctat
      181 tattgtcgac caactactta ggtgtcaacg agttttgcca ttgttggcca cggcgcgggg
      241 atttgatcga ctgcggaagg ggtcgcggcg tctaaagtgt tgagcgccaa atggaaactt
      301 tgggcagtga cgagatcatc gtggaacgcg ctctgagtgg cgagcctgac gctttcggcg
      361 agatcgtgcg gcgctgggag cggcgcatct ttgcgctcac ttacggcatg ctgggccgcg
      421 aggaagacgc gcgcgacgcg acgcaggaga cgtttctggc tgcctttcgc aacctgcgcg
      481 ggtttcgcgg tgaagcgaag gtctcgtcct ggctgcaccg gattgccgtc aaccagtgca
      541 tcacgcggca gcggcgggcg acggtacgaa atgaatccgc gctcgacgac gatgagacca
      601 cggcaaacac ctttgccgcg cctctcgaag catcgcccgc cacgatcacc gagggacgcc
      661 agcgaagcgt cgccgtacgc cgggcgctca acagcttgcc ggtggagttg cggcaggtgg
      721 tggtgatgaa ggagtttgaa gagctgacgt ttcgtgaaat ctccgaagcc ctcgacctac
      781 ccctgagcac ggtcaagagc aggctctaca cgggactgaa gcaactgcaa atgcgtctgg
      841 agaagtttgc ggcgtgagat tgcgattggc tcaagagact gttggaatga ctcaagagac
      901 tgttggagtg gctcaggaga ctggtggaat gactcaagag actcttggaa gcgacttcaa
      961 gacggcttcg ccgccggatg tgaggcgagg ctacgcctcg ccggccagtc gagaaaagaa
     1021 gatcgggcga tgcccctggt tcggccttcg gcccacttgg gcggagcccg aacgaggggc
     1081 gcagccccgg ggtttcagtt gaggtctacg gcgaggcgta gcctcgcctc acatccggcg
     1141 gcagagccgc agtgctgaag tagcggagcg gcgagcgcag agccgcaggg ctgaagtagc
     1201 ggagcggcga ggcggcagag ccgcagtgct ggaagcagcg gagcagcgag cgcagagccg
     1261 cggggctgaa gtagcgaagc ggcgaacaga gattggacag agtgcttaag aacgggaatg
     1321 aagatgaacg aaatggacct ctcctcaact tgtgaacgcg cggaagagct ggtttcggtg
     1381 ctgtatggcg aggccggcga gagtgagcgg cgcgattttg aagttcacat gcagcagtgc
     1441 ggcaactgcc gggcggagtt tgccgcgttt gcgcaggtgc gcgaatcgat tggcgagtgg
     1501 cgcgatgagg cgttggcggg atttgtctcc gcacacgcaa acgtgccgcc cctcagaaag
     1561 tcggcgctcg cggcgctgcg gcagtttttc gatctgtcac cgttgtggtt gaagggtgcg
     1621 attggttttg cggcagtggt tttctgtgtg ctcgcggcgt tcgcagtgtg gcggtcagga
     1681 tccacagatc ctgtttatac aaagcaggat ttggatcgcg cagtccagga agcgcttgca
     1741 aagcagcaac gcgagcagcc gcgcgatgta cccgacaagc ccgcgctcat cgtggagtcg
     1801 ccgaagccga agagttcaaa catcgccaag tcagagccca aagcgcgacg gccgttttcg
     1861 aaagccgaac gcgctcaact cgccgccgag ttgagactga tcaccagcga cgacgaaact
     1921 gatctcgacc tgctcgacga tcggattaat agacagaggt agaaatgaaa atactgctca
     1981 gtttgatact tgtcctcacg gccgcgagct tcgttatggc ccagcaggag ccgggcgaaa
     2041 ccatggaccc gatcgaacaa cttcgcctga ctcccgatca gcgccaagcc gttcgccgca
     2101 tcgtcgccga cacgagactc gaacgccaat caaccaaccg tcgcttgcgt gaagccaatg
     2161 tcgcgctcga tcaggcgctc gacaacgaac ccaccgacga gaacctgatc gaacaacgaa
     2221 tcaacgaagt cgccgctgcg caagcagcgc agttgcggct gcgaattcac accgagatga
     2281 gaatccgccg cctcctcaat cccgaacagt tagccacgct gcgccgcttg cggcttcagt
     2341 tgcgcgacgt catggcgcca caacgaatga acaaccagcg acggcccacg ccgcagcagg
     2401 gactccgtcc acgtccgtag aatcgcgcta aggccaaacc tgaagacgct tggcgatctg
     2461 ccagtcctgt ttttttgttg ctcttgacgc ctcacgtgat atttgcgcat gataggccgc
     2521 tcttttcgag atggttgcgc ccctttggac tggtctaatt aattctcaat gaacttcgcc
     2581 acgcgcgctc tgctcgagct gcaagagacg acgctgttgg ccgcgcgcgc cgtccgcggt
     2641 ctcttcaagc gaccccgcta tatcccggaa atgatcgctc agatggacgc catcggcgtc
     2701 ggatcgctga cgatcatcat cctgacggga ttcttcaccg gtggtgtgct gaccgtacag
     2761 acttttccca ccctcaaagc ctacggcgca caatcgcaga ccggctatct cgtcgccgtc
     2821 tcgctcgttc gggaactcgg ccccgtgctt tgcgcgctga tggtcaccgg gcgtgtcggc
     2881 tccgcaatct cggccgagct cggttccatg gtcgtttcac agcagatcga cgcgatgcgc
     2941 gctctcggca cggacccgat ccgaaagctc gtagctccgc gtctgtgggc gctgctcgtc
     3001 agcctgccgc tgttaactgt gctcgcggac gtgctgggta tctttggcgg ctgggttacg
     3061 gccgtggcgc tctattccgt ctcttcgagc gtcttcatct ccgcggtgcg cgacggcatc
     3121 accactgacg acctgatcgg cggcgtcgtt aagccactcg tcttttcgct gattatcggc
     3181 acgatagcgt gccggcaagg tctcagcacg gaaggaggca cggtcggcgt cgggcgctcg
     3241 accacgcgag cagtcgtcat ggcctccatc atggttatta ttgccgacta ctttctcgct
     3301 aaggcgcttc aggttattct aggcactacg taacaccttt ggtgctgcaa gatggcaacc
     3361 gaaatacata ctacttctcc gactgtcagc gaggacgcgc aagagtcgac ttttcgcgag
     3421 gtcgacgatc gcgaccgcgc tattcccgcg attgagtttc gcgacgtcgt gctcgcgttt
     3481 gacgagcgcg tcatcctcga tcacctgagc ttcaaagtaa tgaaaggtga gacgaagatc
     3541 atcctcggcg gttccggcgg cggaaagtcg acgatcatca agctggttct gggtctgctc
     3601 aaaccggacg ccggccaggt tttggtcgac ggcgaagaca ttaccgatta cagcgaagaa
     3661 caaatgatgc gcgtgcgcaa gaacatcggc atggtcttcc aggaaggcgc gcttttcgac
     3721 tcgctctcgg tctacgacaa tgtcgcctat cgtttgcacg aacagggcgt gcc
//
LOCUS       DASWTX010000818         2203 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_55766, whole genome shotgun sequence.
ACCESSION   DASWTX010000818 DASWTX010000000
VERSION     DASWTX010000818.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2203
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55766"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1292
                     /locus_tag="VGD38_12420"
     CDS             <1..1292
                     /locus_tag="VGD38_12420"
                     /inference="COORDINATES: protein motif:HMM:NF019869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEY0728870.1"
                     /translation="SALWPFSTLGWPNETADLKTFYPTSVLVTARDIIFLWVSRMVMT
                     GMKFMGREPFADVFVTGTILDAQGQRMSKTKMNGVDPLDVFDKFGVDATRLTLAQVGS
                     TDTRWNEKQVESYRNFANKIWNAARFCLLYSEEPQTHTDDTDLQLRDRWILSRLNRTA
                     VEVNAALNAYEFHAAVQTLYHFFWDDFCDWYIELVKADVTSEEDTPQRSAARARLLSV
                     LEQALRLLHPFMPYITEELWLRLPGNKQLHPAYAGAEPTIMLAAYPEGRKELIDEAAE
                     SEMQAIIDLISRVRNIRSEMNIKPADRVSIVLRPGAGKTNDVLLAAKDQIMRIARASA
                     MEIGEAPKASARAVLAGGAELAIPLEGLIDFEQERQRLNREQQKLQAEAAKLEAQLSN
                     PNFVERAPAERVNEVRARIADIAQRSSQLQQTVENLQ"
     gene            1289..2143
                     /gene="nadC"
                     /locus_tag="VGD38_12425"
     CDS             1289..2143
                     /gene="nadC"
                     /locus_tag="VGD38_12425"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR00078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0019363 - pyridine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HEY0728871.1"
                     /translation="MNWIDEGALYSQIGLFLREDLGRGDITTQSIIARNTRARARFVA
                     GEKMIVAGLEAAEEVFLTLDSQQQLEAFAADGEQVEAGKVIARMVGFADVLISAERVA
                     LNLLQRLSGIATLTNQYVTAVEGTGAQIVDSRATTPGLRLLERYAVELGGGFNGRFGL
                     DDGVVVTSNHVSILGGVAAAVKTAKEKLGYLHKVGVQVASENEVKEAVASGADVVMFD
                     GITAEELKRLGSIAKSLSQSVAIECSGPITPANVREYAEAGAQLIRIDALTNAAPAMN
                     ITFRVQPF"
BASE COUNT          489 a          653 c          657 g          404 t
ORIGIN      
        1 catcagcgct ctggccgttc tcgacgcttg gttggcccaa cgaaaccgcg gatctaaaaa
       61 cgttctatcc gacctcggtg ctcgtcaccg cgcgcgacat catcttcctg tgggtctcgc
      121 gcatggtgat gacgggcatg aagttcatgg gacgcgaacc ctttgccgac gtgttcgtga
      181 ccggaacgat cctcgacgcg caaggccagc gcatgtcgaa gacgaagatg aacggcgtcg
      241 atccgctcga cgtgttcgat aagtttggcg ttgacgcgac gcgcctcacg ttggcccagg
      301 tcggcagcac cgacacgcgc tggaacgaga agcaggtcga gtcgtatcgc aacttcgcaa
      361 acaagatctg gaatgcggcc agattttgtt tgctgtactc cgaagagcca cagactcaca
      421 cggatgatac ggacctgcaa ttacgcgatc ggtggatcct ctcgcggttg aaccgcacgg
      481 cagtcgaggt caatgcggcg ctgaatgctt acgagtttca cgcagccgta cagacgcttt
      541 atcacttctt ctgggacgac ttctgcgact ggtacatcga gctcgtcaaa gctgacgtga
      601 cttctgagga ggacacgcct cagcgtagcg ccgcgcgcgc ccgtctgttg agcgtgctcg
      661 aacaggcgtt gcggctgctg catccgttca tgccgtacat cacggaagaa ctgtggttgc
      721 gactcccagg caacaagcaa cttcatccgg catacgcagg cgccgagccg acgatcatgc
      781 tcgcggcgta tcctgaagga cgtaaggagt tgatcgacga agccgccgag tcagagatgc
      841 aggcgataat cgacctgatc tcgcgtgttc gaaacatccg ctcggagatg aacatcaaac
      901 ccgctgaccg tgtttccatc gttctgcggc ccggcgccgg aaaaaccaac gatgttcttt
      961 tagccgcgaa ggaccagatc atgcgaattg ctcgcgcgtc ggcaatggag attggcgagg
     1021 cgccgaaagc ttcagcacgc gcggtgttgg ccggtggcgc agaactcgca ataccgctcg
     1081 aaggcttgat cgacttcgaa caagaacgcc agcgtctcaa ccgcgagcaa caaaaactac
     1141 aagctgaagc cgcgaaactc gaggcccaac tcagtaatcc aaacttcgtc gaacgcgcgc
     1201 ctgccgaacg cgtcaacgaa gtgcgagcgc gaatcgcgga catcgcgcaa cgctcctcac
     1261 aactgcagca gacagtcgag aacctccaat gaactggatc gacgaaggcg cgctctattc
     1321 acaaatcgga ctcttcctgc gcgaagacct cggtcgcggc gacatcacca cgcagtcaat
     1381 cattgcccgt aacacacgcg cccgcgcgcg tttcgtcgcg ggcgagaaga tgatcgtcgc
     1441 gggactcgaa gccgccgaag aagttttcct gacgctcgac tcgcagcaac agctcgaagc
     1501 gttcgccgcc gacggcgaac aagtcgaagc gggcaaagtg atcgcgcgca tggtcggatt
     1561 tgccgacgtg ctgatctccg ccgaacgcgt cgcgttgaat ctgttgcagc gtctctcagg
     1621 tatcgccacg ctcaccaacc agtacgtgac cgcggtcgaa ggcaccggcg cgcagatcgt
     1681 cgattcacgc gcgaccacgc cgggtttgcg tctgctcgaa cgttacgcag tcgaactggg
     1741 tggcggattc aacggccggt tcggcctcga cgacggcgtg gtggtgacgt cgaatcacgt
     1801 ttcgattctc ggcggcgtcg cagccgcggt gaagacggcg aaagagaagc tgggttatct
     1861 gcacaaagtc ggcgttcagg tcgcgagtga aaatgaagtg aaggaggcgg tcgcaagcgg
     1921 cgccgatgtg gtcatgtttg acggcataac cgcggaagag ttgaagcggc tcggcagcat
     1981 tgcgaagagt ttgtcgcagt cggtcgcgat cgagtgctcc ggaccgatca cgcctgcgaa
     2041 cgtgcgtgag tatgctgaag ccggcgcgca attgattcgg atcgacgcgt taaccaacgc
     2101 cgcgcccgcg atgaacatca cttttcgggt ccagcctttt tagccacaaa gagagcacaa
     2161 tgagcacgcg gcaaaaactc gcgcaccggg ccctcgaacg tca
//
LOCUS       DASWTX010000819         2722 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_384357, whole genome shotgun sequence.
ACCESSION   DASWTX010000819 DASWTX010000000
VERSION     DASWTX010000819.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2722
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384357"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..400
                     /gene="rpsG"
                     /locus_tag="VGD38_12430"
     CDS             <1..400
                     /gene="rpsG"
                     /locus_tag="VGD38_12430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010720461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEY0728872.1"
                     /translation="KFISGVMWEGKKSVAEGIFYDAMRQIGDKTGEEPLKVFKRAIDN
                     VKPTVEVKSRRVGGSTYQVPIEVHQERRGALAIRWIVSYARGRGEKTMTDRLAAEILD
                     AANNRGNAVKKKDDTHRMADANKAFAHYKW"
     gene            408..2504
                     /gene="fusA"
                     /locus_tag="VGD38_12435"
     CDS             408..2504
                     /gene="fusA"
                     /locus_tag="VGD38_12435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018003270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEY0728873.1"
                     /translation="MAKYDLSKFRNIGIMAHIDAGKTTTTERILYYTGITHKIGEVHE
                     GTATMDWMEQEQERGITITSAATTCFWERNGVDHRINIIDTPGHVDFTMEVERSLRVL
                     DGAVAVFDGVAGVEPQSETVWRQADKYGVPRICFINKLDRAGASFDRSFESIITRLGA
                     NPVALQIPIGLEDQLKGVVDLVAMKGLVWKDESKGAEYEVTEIPEDLKDAAAAAREKL
                     IEAVASIDDELMHKYLEGEEISEAEIRKALRAGTISLKLVPVVTGSAFKNKGVQTLLD
                     AVVDYLPSPLDIPPVEGINPKNGETEARPPEASAPFSGLVFKIMADKHLGQLSFVRIY
                     SGTIKAGSYAYNPIKDTKERVGRLMRMHANKREDIEGASAGEIIAIGGMKQVTTGDTI
                     CDENKPIVLEAMEFPAPVIRVAVEPKTRQDQDKLGVALNRLAQEDPSFNVSTDQETGQ
                     TIIAGMGELHLEIIVDRMKREFGVEANVGKPQVAYRETITKPAPGKEVYKKQTGGRGQ
                     YGHVEIEIEPAPGEGFVFENEITGGAIPKEYIKPTEQGIRDAMERGFLAGYEMVDIKV
                     RLVFGSYHEVDSDERSFHIAGSLAFQDAVKKAGPVLLEPIMRVEVVTPNDYTGAVNGD
                     LNSRRGRIESMEPRVGGAQVITAFVPLSEMFGYTTDLRSATQGRATSTMHFERYEQAP
                     KNIAEEVIARVQGVAK"
     gene            2588..>2722
                     /locus_tag="VGD38_12440"
     CDS             2588..>2722
                     /locus_tag="VGD38_12440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEY0728874.1"
                     /translation="MSKEKFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAKNNPKVQ
                     F"
BASE COUNT          627 a          743 c          855 g          497 t
ORIGIN      
        1 caagttcatc agcggcgtga tgtgggaagg caagaagagt gtggcggaag gcatttttta
       61 cgacgccatg cggcagatcg gcgataagac cggagaagag cccttgaagg ttttcaaacg
      121 cgccatcgac aacgtgaagc ccacggttga agtgaagtca cggcgcgtcg gcggttcgac
      181 ttatcaggtt ccgattgaag ttcaccagga gcggcgcggt gccctggcta ttcgttggat
      241 tgtctcctac gcgcgtgggc gcggtgaaaa aacgatgacg gatcgtctcg cggccgagat
      301 tctcgacgcc gccaacaacc gcggcaacgc cgtgaagaag aaagacgaca cgcatcgcat
      361 ggcggacgcg aacaaggcgt tcgcgcatta caagtggtag ttttcaaatg gctaagtacg
      421 atttaagtaa gttcaggaat atcggcatca tggcgcacat cgatgccggt aagaccacca
      481 ccaccgaacg tatcctttat tacaccggca tcacgcacaa gatcggcgag gtgcacgagg
      541 gtacggcgac gatggactgg atggaacagg agcaggagcg cggtatcact atcaccagcg
      601 ctgcgacgac ctgtttctgg gaacgcaatg gtgtcgatca tcgcatcaac atcatcgaca
      661 ctcccggcca cgtcgatttc acgatggaag tggaacgttc gctgcgcgtg ctcgacggcg
      721 ccgtcgctgt gtttgacggc gtcgcgggcg tggagccgca gtcagaaacc gtctggcgtc
      781 aggccgacaa gtacggcgtt ccgcgaatct gcttcatcaa caagctggat cgcgcgggcg
      841 cttcgtttga ccgttcattc gaatccatca tcacgcgcct gggcgcgaac cccgtcgcgt
      901 tgcagatccc gatcggcctt gaagatcagc tcaagggcgt ggtcgatctg gtcgcgatga
      961 agggtttggt ttggaaggac gagagcaagg gcgcggaata cgaagtcacc gagatcccgg
     1021 aagatttgaa agacgccgcc gccgctgcgc gcgagaagct tatcgaagcc gtcgccagca
     1081 tcgacgacga gttgatgcac aagtatctcg aaggcgaaga gatctccgaa gccgagattc
     1141 gcaaggccct tcgtgccggc accatcagct tgaaactcgt tcccgtcgtc acgggttccg
     1201 ctttcaaaaa caaaggcgtg cagacgctgc tcgacgccgt cgtcgactac ctgccgtcgc
     1261 cgttggacat tccgccggtt gagggaatca atccgaaaaa cggcgagacc gaggcgcgtc
     1321 cacccgaggc gtcggctccg ttttctggtc tggtcttcaa gatcatggcc gacaagcacc
     1381 tgggccagct ctcgtttgtc cgcatctaca gcggaacgat caaagcgggt tcctacgctt
     1441 acaacccgat caaggacacg aaagaacgcg tcggccgcct gatgcgcatg cacgccaaca
     1501 agcgtgaaga tatcgaaggc gcgagcgcgg gcgagatcat cgccatcggc ggtatgaagc
     1561 aggtcacgac cggcgacacg atctgtgatg agaacaagcc gatcgtgctc gaggcgatgg
     1621 agtttccggc gcccgttatc cgcgtggctg tcgaaccgaa gacgcgtcag gatcaggaca
     1681 aactcggcgt ggcgttgaat cgtctcgctc aggaagatcc gtcgttcaat gtttcgaccg
     1741 atcaggagac cggacagacg atcattgccg gcatgggtga gctccacttg gagatcatcg
     1801 tcgaccgcat gaagcgtgag ttcggcgtcg aagcgaacgt cggcaagccg caggttgcgt
     1861 atcgtgaaac gatcacgaag cccgcgcccg gcaaggaagt ctacaagaag cagactggcg
     1921 gccgcggtca gtacggacac gtcgagatcg agatcgagcc cgcaccgggc gaaggtttcg
     1981 ttttcgagaa cgagatcacc ggcggcgcga ttccgaagga gtacatcaag ccaaccgaac
     2041 agggcatccg cgatgcgatg gagcgtggct tcctcgcggg ctatgaaatg gtcgacatca
     2101 aggtgcggct cgttttcggc agctatcacg aagttgactc ggatgagcgc tcgttccaca
     2161 tcgccggctc gctcgcgttc caggacgcgg tgaagaaagc cggtcccgtg ttgctcgaac
     2221 cgatcatgcg cgtcgaggtg gtgacgccga acgattacac cggcgcggtg aatggcgact
     2281 tgaattcacg tcgcggccgg atcgagagca tggagccacg cgtcggcggc gcgcaggtga
     2341 tcacagcgtt cgtgccgctg tcggaaatgt ttggttacac gactgacttg cgctcggcaa
     2401 cccagggccg cgcgacttcg acgatgcact tcgagcgcta cgagcaggcg ccgaagaaca
     2461 tcgcggagga agtcatcgca cgagttcagg gagtagcgaa ataaggggcg cgcaagcttt
     2521 taacggcttg cgcgattttt ttgactaatg cgccactctg agtggcggaa tccggggaat
     2581 aaaacagatg tcgaaggaaa aatttgaccg ttcaaagccg cacgtgaaca tcgggaccat
     2641 tgggcacgtg gatcacggga agacgacgtt gacggcagcg atcacgaagg tgttggcgaa
     2701 gaacaatccg aaggtgcagt tt
//
LOCUS       DASWTX010000820         2698 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_406718, whole genome shotgun sequence.
ACCESSION   DASWTX010000820 DASWTX010000000
VERSION     DASWTX010000820.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2698)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2698)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2698
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_406718"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2486)
                     /locus_tag="VGD38_12445"
     CDS             complement(<1..2486)
                     /locus_tag="VGD38_12445"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HEY0728875.1"
                     /translation="MLRLITLAALLCCWSSATFAQAPAADTAEVMRQLLALPAPTPRK
                     AQSPDAVEPRQPRPESFFDKNNPPADDAPLEELLEYWLRWTNSTAGPVLSEVNKQRLL
                     DACTQDIRMLTAYVSVFPAEESTAKRIKDVYDKALSEPSNDISLDTVKNWLMFNSKFF
                     VNELFARASRLKEDNKSGYIDNQESLVALARLDWQTAEPLVKGLASGSQPRSSALALT
                     LLYQQAIRDKDLEGEDNYRSRLKTIASDRNAPGRARDTSIEALSKTEWSGRDDWYLSL
                     FADDSLRETFDGNYGFSPLRTLFNRDPDKWIPIMSRLVESKDRAVQQAAASCLVNYAT
                     NNPRRDAILPVLRWLSDPDWLQLRGSTQRSWFMQVMNKVEIPESVPGLIWIVENEDEN
                     RQWAARTLAHYKDPRAIPALRKALLKSHEDERRLILDGLIASGGLPDSEGVAALEAYA
                     AKQMTAEGREDLERFRAYDAEPLPLPISIGRYLATVNDVPESLARAVLARAESLKKTN
                     PALAESLLSAANQWQGRAIDLDMIQRIARGSADVNTIATALEKRTRLRENLAAELQML
                     LERTDEALGVGAVLLNDPQLAQSILTSEHQQPQIGLLAAARLTQTPLPVDLVGRLLPS
                     KNPLLALAAKRYLLAEDSKDARKLLWQHHPDQAFVTGWRENYADIDDSNFEPLAKAEE
                     KLRAELFKEDGPLEIFALIGNSEQRYSYVLRIYANKAIYTHYEDNSRYLERVITPAEL
                     SAFKDLVVTAGLEDLGPQFNDCHHNCWVAEFLALKKSEAWRVFSYGPFSTWDSLLARF
                     EQLGRGEGARMRYDLENEIKGLEVLYADDNL"
BASE COUNT          573 a          758 c          739 g          628 t
ORIGIN      
        1 agattatcgt cggcatacaa cacttcgaga cccttgattt cgttttcaag gtcgtagcgc
       61 attcgagcgc cttcgccacg accgagctgc tcgaatctag ccaacagaga gtcccacgtg
      121 gaaaatggtc cataactgaa aacacgccag gcttcactct ttttcagcgc caaaaactcc
      181 gcgacccaac agttatgatg gcaatcatta aattgaggtc cgagatcctc aagaccggca
      241 gtaacgacga ggtccttgaa agccgacaat tcggctggtg ttatcacacg ctcgagatat
      301 cgtgagttat cttcgtaatg cgtataaatc gctttgttcg catagatgcg caggacgtaa
      361 ctgtagcgtt gttcactatt gccgatcagg gcaaagattt cgagcggacc atcctccttg
      421 aacaactcgg cgcgcaactt ctcctctgcc tttgccaacg gctcgaagtt actgtcgtca
      481 atgtccgcat aattctcccg ccagccggta acgaaagcct ggtcgggatg atgctgccat
      541 aaaagcttgc gcgcatcctt gctgtcttcg gccagcagat agcgttttgc cgcgagcgcg
      601 agcagcggat ttttgctcgg cagcagcctg ccaaccaaat ccacaggcaa tggcgtttgt
      661 gttaagcgcg ccgcggcaag caagccgatc tgcggttgtt gatgttctga agtcaggatg
      721 ctttgggcca actgcggatc gttcagcaac actgcgccga cgccgagcgc ttcatcagtc
      781 cgctccagca gcatctgcaa ttcagcggcg aggttttccc gcagcctggt tcgcttctcc
      841 agcgccgtcg cgatcgtgtt tacgtccgct gagccgcgag cgatccgctg aatcatgtcg
      901 agatcgatcg cgcgaccctg ccactgattg gcagcactca aaagcgactc ggcgagggcg
      961 ggattcgtct tctttaaact ctcagcacga gccaaaaccg ctcgggccag cgactcggga
     1021 acgtcattca cagtcgcgag gtagcgtccg atactgatcg gtaacggtag aggttcggcg
     1081 tcataagcac ggaagcgctc gaggtcttca cggccctcag ccgtcatttg cttcgcggcg
     1141 tatgcttcca gcgccgcaac gccttctgag tccggcaggc cacccgaggc gattagcccg
     1201 tcaagtatga gcctgcgctc atcctcatga ctctttaaca gagcttttct taaggccgga
     1261 atcgcgcgcg gatccttgta gtgtgccaac gttcgcgccg cccactgtct attttcatct
     1321 tcgttttcaa cgatccagat gagaccaggc acactctccg ggatctcgac cttattcatc
     1381 acttgcatga accaggaccg ctgggtgctg ccccgcagtt gtagccagtc cggatccgac
     1441 aaccagcgaa gcaccggcag gattgcgtct cgccggggat tgttcgtcgc atagttgacg
     1501 aggcaactcg cagccgcctg ttgcaccgcg cggtccttgc tctcgaccag ccgggacatg
     1561 atcggaatcc atttgtcagg atcgcgattg aagagtgtcc taagcggaga gaaaccataa
     1621 ttcccgtcga aggtttcacg tagtgaatcg tccgcgaaca gtgaaaggta ccaatcatca
     1681 cggccggacc attcggtttt cgaaagggct tcgatagaag tgtcgcgtgc gcgccccggc
     1741 gcattccgat cggaggcgat ggtttttaag cggctgcgat agttgtcctc accttcgaga
     1801 tccttgtcgc ggatggcctg ctggtagaga agtgttaatg caagcgcact cgaacgtggt
     1861 tgactgccgc tcgcaagccc ttttacgaga ggttcagcgg tttgccaatc caggcgggcc
     1921 agcgctacca gcgactcctg gttatcgatg tatccgctct tgttgtcttc tttaagccta
     1981 ctggcacgag caaatagttc gtttacgaaa aacttactat tgaacatcag ccagttcttt
     2041 actgtatcga gcgagatgtc gttcgagggc tcgctcagag ctttgtcgta aacgtctttg
     2101 attcttttcg cggttgattc ttcggcgggg aacacggaga cgtacgccgt caacattcgt
     2161 atgtcctgtg tacacgcatc cagcaaacgc tgtttgttga cttcagacag aaccgggcca
     2221 gcggttgaat tagtccaccg gagccagtat tccagcaact cttccagagg cgcgtcgtcg
     2281 gcaggcggat tgtttttgtc gaagaaactt tctggacgtg gttgccgcgg ctcgacggcg
     2341 tccggtgatt gggccttgcg aggagttggg gcgggcaacg cgagtaactg ccgcatcact
     2401 tccgcagtgt cagcggcagg ggcttgtgcg aaggtcgcgc tggaccaaca gcataagagc
     2461 gcggcgagtg tgatcagtcg gagcatagtt gttctacttt gacgcgctga acagagcaaa
     2521 gttcccaact aacgccgaag gcgttggcca gtttcagccc agggttgcca caaccctggg
     2581 taaataaaca aacagaacca aacgctgaag gcgttgcgat ggacgcgttt cgctaacgct
     2641 ttcagcgttg gtgctacacg tttcctctta gtcccagggt tgaggcaacc ctgggctc
//
LOCUS       DASWTX010000821         2564 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_406721, whole genome shotgun sequence.
ACCESSION   DASWTX010000821 DASWTX010000000
VERSION     DASWTX010000821.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2564
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_406721"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..959
                     /locus_tag="VGD38_12450"
     CDS             <1..959
                     /locus_tag="VGD38_12450"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY0728876.1"
                     /translation="TLPGVQSAGAINHTPLNGFGMIVFTEIEGQPPPEKTDPPIGAGV
                     ASPEYFQTLRIPLLNGRHLDARDGPGQQKVALVNQAFAQRFFPQGDVLGKRLGFACEE
                     SERLCRTIVGVVGNIRQESLTDEVASELYVPDAQMPMNSMTLFVRTSSDPLSLVGAVR
                     SQVSAIDKNQPIYDVKTLDQRVSDATAVSRSLTVLFSTFALLALVLGAVGIYGIVSYA
                     VTQRTQEIGIRMALGATARDILHLIVKHGLVLVLTGVASGIAGALALTRFLATLLFGI
                     TPTDTLIFVVVAAIFFLIAMFASLIPARRATKVDPLIALRYE"
     gene            956..>2564
                     /locus_tag="VGD38_12455"
     CDS             956..>2564
                     /locus_tag="VGD38_12455"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0728877.1"
                     /translation="MMDSLLKDLKFAFRSLFKRPGFVAVAVITLALGIGGSTAIFTVV
                     DAALLRGLPYKSPDQLVHLWEKTPQDAFSKREFSYPDYQDYQKNNVFEGLAAYTGGRV
                     LLSGNGESESVGGPRVNASFFNVLGVDPILGRTFQAGEDQQGGPRVVVLSYSLWQRRF
                     GGDTGVVGKALTINGESYQVIGVLPQTFQFALRNGDLWLPYQPTQNQLTRRFMHGTNL
                     IGRLKPGVSESQAQSDLGVIASRIEQEHNQSHAGTTVRVVPLQEEIIGTVRPILLVLL
                     AAVGFVLLIACANVASLLLTRSLARQKEVAIRSALGASRWRVVRQLLTESIVLSLLGG
                     AAGLLIAYWGVPALVAALPQNQLNAMPFLKTLGLDASILAFSFGLSLVTGLIFGLAPA
                     LQSSRLDLNEVLKEGGRNMSAGAGHRLRSAMVVTEIALAVVLLVGAGLMMKSLLRLLQ
                     TNVGFETENLLTMAMVLPPAKYTQANQLVNFNDQIQERVRSMPGVSNAGTVDILPLNG
                     GNTTRFYIDGDPVPPPGKEIEANMRFVS"
BASE COUNT          478 a          766 c          781 g          539 t
ORIGIN      
        1 aaacacttcc gggcgtgcaa tccgcgggcg cgatcaacca cacgcccctc aacggctttg
       61 gcatgatcgt cttcaccgaa atcgagggac agccgccacc ggaaaaaaca gatccgccaa
      121 tcggcgcggg cgtggcctcg cctgaatact ttcagacact caggattccg cttttgaacg
      181 ggcgccatct cgacgcgcgt gacggaccag gacagcaaaa ggtcgcgctt gtgaaccagg
      241 cgtttgcgca gcgtttcttt ccgcaaggcg atgtgctcgg taaacgtctc gggtttgcgt
      301 gtgaagagtc ggaaagattg tgccggacca tcgtcggcgt ggtcggaaac atccggcagg
      361 aaagtctcac cgacgaagtc gcttctgaac tttacgtgcc tgatgcgcag atgccgatga
      421 acagcatgac gctgttcgtg cgcacctctt ccgatccgct gtcgcttgtc ggagcagtgc
      481 gcagccaggt ttcggcgatc gacaagaacc agccgatcta tgacgtcaag actttggacc
      541 agcgcgtttc ggatgcgact gctgtttcgc gttcattaac cgttctgttc tcgacgttcg
      601 cgttgctcgc actcgtgctc ggcgcagtcg gcatctacgg catcgtctcg tacgcagtca
      661 cgcagcgcac gcaggagatc ggcatccgca tggcgctcgg cgcgacggcg agagacatac
      721 tgcacctaat cgtcaagcac gggctcgtgc ttgtgctgac cggcgtcgcg agcggaatcg
      781 cgggcgcgct cgcgttgacc cgctttctcg cgacactact cttcggtatc accccaaccg
      841 acactctgat tttcgtcgtc gtcgccgcga tctttttcct gatcgcgatg tttgcgtcgc
      901 tgattccggc gcggcgcgcg acgaaagtgg atccactaat agcactgagg tacgaatgat
      961 ggattctctt ctgaaagatc tgaagtttgc ttttcgtagc ttgttcaagc ggccgggttt
     1021 cgtagccgtc gccgtgatca cgctggccct cggcatcggc ggcagcaccg cgatcttcac
     1081 ggtcgtcgac gcggcgctct tgcgtggctt gccttacaag tcacccgacc agctcgttca
     1141 cttatgggag aagactccgc aggacgcgtt ttccaaacgc gagttttcct accctgatta
     1201 ccaggactac caaaagaaca acgtcttcga agggctcgcc gcttacaccg gcgggcgcgt
     1261 gctgctgagc ggcaacggcg aatcggagag cgtcggcggg ccgcgcgtga acgcgagttt
     1321 cttcaacgtg ctcggcgtcg atccgattct cgggcgcacg tttcaagcag gcgaagacca
     1381 gcagggtgga ccaagagtcg tcgtgctgag ttacagcttg tggcaaagac gtttcggcgg
     1441 cgacaccggc gtcgtcggta aagccctcac gatcaacggc gaaagctacc aggtcatcgg
     1501 cgtgttgccg cagacttttc agttcgcact gcgcaacggc gatctgtggc tgccgtatca
     1561 accgacgcaa aaccaactga cgcgccgctt catgcacggc acgaacctca tcggccggct
     1621 caaaccgggc gtcagcgaaa gccaggcgca atccgatctc ggcgtcatcg ctagccgcat
     1681 cgagcaggaa cataaccagt cgcatgccgg cacgacggtg cgcgtcgttc cacttcagga
     1741 agagatcatc ggcacagtca ggccgatact tttggtgttg ctggccgcgg tgggcttcgt
     1801 gctgctgatc gcgtgtgcaa acgtcgcgag cttgttgttg acgcgttcgc tcgcgcggca
     1861 gaaggaagtc gcgatccgtt cggcgttggg cgcgagccgt tggcgcgtgg tgcgtcaact
     1921 gttgaccgaa tcgatcgtgc tttcgctgct cggcggcgcc gcgggattgc tgatcgctta
     1981 ctggggcgtg cccgcgctcg tggctgcgtt gccgcagaac cagttgaacg cgatgccgtt
     2041 tctcaagacg ttgggtctcg acgcgagcat cctcgctttc tcgtttgggc tttcgcttgt
     2101 aacgggtttg atttttggtt tagcgccggc tttgcagtcg tcgcgtctcg atctcaacga
     2161 ggtgctgaaa gaaggcgggc gcaacatgtc ggcgggcgcc ggccaccggt tacgcagtgc
     2221 gatggtcgtc accgagatcg cgctcgcggt cgtgctgctg gtcggcgcgg gtttgatgat
     2281 gaagagcctg ctgcgactgc tgcaaacaaa cgtcggcttc gaaaccgaga acctgttgac
     2341 gatggcgatg gtcctcccgc cggccaagta cacgcaagcc aatcagctcg tcaatttcaa
     2401 cgatcaaatc caggaacgcg tgcgatcgat gccgggtgtt tcgaacgcgg gcacggtcga
     2461 catcctgccg ctcaatggcg gcaacaccac gcgtttctac atcgacggcg atccggtgcc
     2521 gcctccgggc aaagagatcg aagcgaacat gcgcttcgtc agcg
//
LOCUS       DASWTX010000822         2629 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_384451, whole genome shotgun sequence.
ACCESSION   DASWTX010000822 DASWTX010000000
VERSION     DASWTX010000822.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2629
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384451"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1938
                     /locus_tag="VGD38_12460"
     CDS             <1..1938
                     /locus_tag="VGD38_12460"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HEY0728878.1"
                     /translation="LQDIYNPKQEGYFNAFINGSRFNKLVYVFDPFGVPGAIPEEVAL
                     YSYGESDGGMWAAFHREDEFAKGTASSSEDRRIIDITQHDIDAAIKGAHLTVTDRVTF
                     KNLIPGTRVVPFNLYGALRVTSVQDAEGMNLNFIQESKDEDSDFGVILSKPLEAGQTH
                     HLVISFDGDGALRDSGGGNFILTQRSTWYPANANTLFGEDRAIYNMTFRYPKQYTFVG
                     TGAPVEPDSRDGDIAVAKWSSGKTELAVAGFNYGRFKRKEVVDKDSGYNVEFYANVEV
                     PDELKAIQRNIEQAESQGVRSMTTLSSISTTAMADPAIADAQNSMRIYNIFFGKLPYT
                     RIAMTQQPAAGFGQAWPTLVFMPYLAYIDTTQRTQLLGTQGGTDTFWRYVAPHEVAHQ
                     WWGHIIGWDSYRDQWMSEGFAEFSASLYVQLTRGNDKFVDFWEDLRQQVVQASPATRG
                     RKPYTIGPVTQGYRLNNAKTGGAARFLIYPKGAYILHMLRMMMYKQGQGGDAAFQTMM
                     KDFVQTHYNQPVSTEDFKRAVEKHMTKEMDIDKNGKMDWFFDEWVYGTEVPAYKFEYN
                     VSKDGVLNAKITQSGVSDRFVMLVPIYVDMGKGWAKLGSAQMAGNVTTEIKDIKLGAV
                     PKRMAVCAMNDVLATSIENTK"
     gene            complement(1945..>2629)
                     /locus_tag="VGD38_12465"
     CDS             complement(1945..>2629)
                     /locus_tag="VGD38_12465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728879.1"
                     /translation="PFFDSDEKHPRCPYCNAAKRWHARLDTHCLEGGKATDAPRRKLT
                     KTLQKKPEHFAIIEQKSDRRMAFFNWLDTLRLTLDLNEPAWLLEATKAFLERKEPKRN
                     WNEIFEGLRGVRPSSRMTEGSEREGTRLFLAPALYNEALLVQYLVSRSHEHGGRTLEG
                     RLTLLELLRRMRKGGYLSAHGIEAADQFEMFEKLIDEVAGSGSLKFYYIVDRREFIDK
                     VKSVYSAYA"
BASE COUNT          611 a          778 c          729 g          511 t
ORIGIN      
        1 ctgcaggaca tttacaaccc gaaacaggaa ggctacttca acgcgttcat caacggcagc
       61 cggttcaaca aactggtcta cgttttcgat ccgttcggcg tgcccggagc cattccggaa
      121 gaagtcgcgt tgtacagcta cggtgaatca gacggcggca tgtgggcggc tttccaccgc
      181 gaagacgagt ttgcgaaagg cactgcttcg agttctgaag atcgccgcat catcgacatt
      241 actcagcacg atatcgacgc ggccatcaaa ggcgcgcatc tcaccgtcac cgatcgcgtc
      301 acgttcaaga acctgatacc cggcacgcgt gtcgttccgt tcaatctgta cggcgcgttg
      361 cgcgtcacca gtgtgcagga tgccgagggc atgaatctga acttcattca ggaaagcaaa
      421 gatgaggatt cggactttgg cgtgatcctc tcgaagcctc tcgaagcagg acaaacgcat
      481 cacctggtaa tttctttcga cggtgacggc gccctgcgcg attccggcgg cggcaatttc
      541 attctgacgc agcggtccac gtggtatccc gccaacgcca acacgctctt tggcgaagac
      601 cgcgcgatct acaacatgac gttccgctat cccaagcagt acacgtttgt aggaaccggc
      661 gcaccggtcg aaccggattc acgcgacggc gacatagccg ttgccaaatg gtcgagcggc
      721 aaaaccgaac tggccgttgc gggcttcaac tatggccgct tcaaacggaa ggaagtcgtc
      781 gacaaagact ccggttataa cgtcgagttt tatgcaaacg tcgaagtgcc ggacgagttg
      841 aaggccatcc agcgaaacat cgaacaagcg gaaagccagg gcgtcaggtc catgacgacg
      901 ttgagctcga tctccaccac ggcgatggcc gacccggcga tcgcggacgc gcaaaactcg
      961 atgcgcatct acaacatctt tttcggcaag cttccctaca ctcgcatcgc gatgactcag
     1021 cagccggccg caggcttcgg acaggcatgg cccacgctgg tcttcatgcc gtatctcgcg
     1081 tacatcgaca ccacgcaacg cacgcaattg ctcggcacgc aaggcggcac agacacgttc
     1141 tggcgctacg tcgcgccgca tgaagtcgcg caccaatggt ggggtcacat catcggctgg
     1201 gacagctatc gcgaccagtg gatgagcgaa ggcttcgccg agttttctgc ctcgctctac
     1261 gtgcagctaa ctcgcggcaa cgacaagttc gtcgattttt gggaagacct gcggcagcag
     1321 gttgtgcagg cgtcaccggc aacacgcgga cgtaagccct acacgattgg accagtgacg
     1381 cagggctacc ggctcaacaa cgccaagacc ggcggcgctg cgagattttt gatctacccg
     1441 aaaggcgcct acatcctgca catgctccgc atgatgatgt acaagcaggg acaaggcggc
     1501 gacgcggcgt tccagaccat gatgaaggac ttcgtccaaa ctcactataa ccagccggtc
     1561 tcaaccgagg atttcaaacg cgcggtcgag aaacacatga cgaaggaaat ggacatcgac
     1621 aagaacggca agatggactg gttcttcgac gagtgggttt acggcacgga agtcccggct
     1681 tacaagtttg aatacaacgt cagtaaagac ggcgtgctca acgcgaagat cacgcaatca
     1741 ggagtctcgg acaggttcgt gatgctggtg ccgatctatg tcgacatggg caagggttgg
     1801 gcgaaactcg gttcggcaca gatggccggt aacgtgacga cagaaatcaa ggacatcaaa
     1861 ctcggcgcgg tgccaaagcg gatggcggtt tgcgccatga acgacgtgct cgcgacgagc
     1921 atcgagaaca ctaagtaaaa cgttttacgc gtaagccgaa taaaccgatt tgaccttgtc
     1981 aatgaactcg cggcggtcga cgatgtagta gaacttcagc gaacccgacc ccgcgacttc
     2041 gtcgatcagt ttctcaaaca tctcaaactg atccgcagct tcaatgccgt gtgcgctcag
     2101 gtaaccgcct ttgcgcatac ggcgcaacaa ttccaacaac gtcaagcgtc cctcgagcgt
     2161 gcgtccgccg tgctcgtgcg atctgctgac caggtactga accagcagcg cctcgttata
     2221 aagcgcgggc gcgagaaaca gccgcgttcc ctcgcgttcc gatccctccg tcatccgcga
     2281 ggacggccgc acccctctca acccctcaaa gatttcgttc caatttcgct tcggctcttt
     2341 ccgttcgaga aacgcttttg tcgcttcgag caaccacgcc ggctcattca gatcgagcgt
     2401 gaggcgcaag gtgtcgagcc agttgaagaa cgccatgcgc cgatcagact tctgttcgat
     2461 gatggcaaag tgctccggct tcttctgcag cgtcttggtc aactttcgcc gcggcgcgtc
     2521 cgtcgccttg ccgccttcga gacaatgcgt gtcgagacgc gcgtgccaac gctttgcagc
     2581 gttgcagtaa ggacagcgcg gatgcttctc gtcactgtcg aaaaacggc
//
LOCUS       DASWTX010000823         3581 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_140006, whole genome shotgun sequence.
ACCESSION   DASWTX010000823 DASWTX010000000
VERSION     DASWTX010000823.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3581
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140006"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(238..1380)
                     /locus_tag="VGD38_12470"
     CDS             complement(238..1380)
                     /locus_tag="VGD38_12470"
                     /inference="COORDINATES: protein motif:HMM:NF017569.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0728880.1"
                     /translation="MSANEEQLRRWRLILGANDNEGTGYELAGRDLQMDHALEALYDS
                     ERSGNLSGSSPKIARWLGDIRDYFPSSVVRIMQQDALERLGLKQMLLQPEMLEAVEPD
                     VHLVATLLSLSRVMPNKTKETARMVVRKVVDELERKLANPLRQAVTGSLNRSVRNRRP
                     RHNEINWDRTIRANLKHYQPDYKTIIPETRLGFGRRTSALRDIVLCVDQSGSMAGSVV
                     YSSIMAAVLASIRSVRTSLVVFDTSVVDLTELLEDPVEVLFGTQLGGGTDINRALGYS
                     QTLVREPSDTILILITDLFEGGKEEEMLKRAAALVSSGVQMITLLALDDKGAPGFNQQ
                     LAGKLAAFGIPCFACSPDVFPDLMAAAIERRNINQWAAERSIVVAR"
     gene            complement(1377..>3581)
                     /locus_tag="VGD38_12475"
     CDS             complement(1377..>3581)
                     /locus_tag="VGD38_12475"
                     /inference="COORDINATES: protein motif:HMM:NF040143.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5682 family protein"
                     /protein_id="HEY0728881.1"
                     /translation="GIRHHGPGSARSLWQALRALNPDVILIEGPPDANELVAFAADEQ
                     MRPPVALLVYLPNEPKRAVFYPFAEFSPEWQAIQFGLAQQVPVRFMDLPQWHQFALES
                     DSESEESQTATEVRRDPLRWIAEASGYSDSERWWDHTIEHRRDSTESFKAIMELMSAL
                     REEVGKLDESKPEPREDLREAYMRQSIRAAEREGFERIAVVCSAWHGPVLENMPPAKA
                     DTALLKGLAKVKTSATWVPWTMGRLTYWSGYGAGIESPGYYQHLWSGPDDVTVRWMIR
                     VAQLLRGQDLDASSASVIEAVRLGHSLAALRDRPVPGLSEFNDAVRAVFCFGDDTPMQ
                     LISEKLIVGELLGQVPDATPSLPLQQDLQREQKRLRLPPEATQEVRDFDLRKPNDLDR
                     SRLLHRLRLLDIPWGTMEQATGKGTFRELWRLQWQPEFAVSVIEANIWGNTVASAASA
                     SARAAADRAQELPALTSLVEDALLADLPEAIDHVMTRLEQVAALSNDIPHAMEALPSL
                     AGVLRYGNVRQTDTAMVQQVVDGLMTRIVIGLPNACSALNDEAAEEMYDRLMRVHTAL
                     LTLQNPDLTSDWNYVLGQLVDQAGLHGLIAGRCCRLLFDQKLLAAEEVERRMGLAISP
                     AVDPVQSMAWIDGFLRGSGLILLHNEELWRILDEWVHSVKSDVFPNVLPLLRRTFSTF
                     SGPERSQIGALARRGAGGSPTRLAMVSTTLDEDRARKVLPLVAQILGLEYQS"
BASE COUNT          731 a         1132 c         1011 g          707 t
ORIGIN      
        1 tttgcgatcg gcgatcaaag aacattttgt gccctggttg tcgaacagta tcgtgtccgt
       61 actgcagagt ttcaagatcg acaccatgaa tgttttctcg tttctcgata tagcgcagga
      121 gttggagcgg caacgccgga gcctgcgagc gagtcctttg tcgtcggcgc caccaacgcc
      181 ggcgcctagt aagtcccctg gtccacgtcg aaaacaacag ccgtcctgat catcacgtta
      241 tcgagcaacg acgatgcttc gctctgcggc ccactgattg atgttgcggc gttcgatcgc
      301 ggccgccatg agatcgggaa agacgtccgg cgagcaggcg aagcacggga tgccgaacgc
      361 ggcgagcttg ccggcgagct gttgattgaa accgggagcg cctttgtcgt cgagcgcgag
      421 cagcgtgatc atctgaacac cggaagacac gagcgcggcc gcgcgtttca acatctcttc
      481 ttcttttccg ccttcgaata aatcggtgat cagaatgagg atcgtgtcgg agggttcgcg
      541 taccagcgtt tgcgaataac cgagcgcgcg gttgatgtcg gtgccgccgc ccaactgtgt
      601 tccgaacagc acctcaacag gatcttcgag cagctccgtt agatcgacga cagacgtgtc
      661 gaataccacg agcgaagtcc tcaccgatcg gatcgacgcc agcaccgccg ccatgatgct
      721 cgagtagacc accgagcccg ccatcgaacc actctggtcc acgcacaata caatgtcgcg
      781 caaagccgac gtgcgacgcc caaagccgag gcgcgtttcg ggaatgatgg ttttgtaatc
      841 gggctgataa tgcttgaggt tcgcacgaat cgtgcggtcc cagttgatct cgttgtgacg
      901 cgggcgtcga ttacgaacgg aacgattcag actgcctgtc acggcttgcc gcagcgggtt
      961 cgcaagtttt cgctcgagct cgtcgacgac cttgcgcacg accatgcgcg ccgtttcctt
     1021 ggtcttgttt ggcatcacgc ggctgagcga cagcagcgtt gcgacgagat gcacgtcagg
     1081 ctcaaccgct tccagcattt ccggttggag cagcatctgc ttgagaccga gtcgttcgag
     1141 cgcatcctgc tgcatgatgc ggacaacgga gctgggaaaa taatcgcgga tgtcgccgag
     1201 ccagcgcgca atcttcggtg aagagccact gagattgccg ctgcgctccg agtcgtacaa
     1261 agcctccagc gcgtggtcca tctgtagatc gcgcccggcc agttcgtagc ctgtgccctc
     1321 gttgtcgttc gcgccgagta tcaagcgcca gcggcgcagt tgttcttcgt ttgcactcat
     1381 gactggtatt cgagaccgag aatttgtgcg accagtggca acaccttgcg cgcgcgatct
     1441 tcgtcgagtg ttgtggaaac cattgcaaga cgcgtcggag atccgccggc gccacgccgc
     1501 gcgagcgcgc cgatctgact ccgctcgggc ccgctgaatg tcgaaaacgt gcgacgcaac
     1561 aacggcaaga cattcggaaa aacatcactc ttcaccgagt gcacccattc atcgagtatg
     1621 cgccagagtt cttcgttgtg caggagtatc agaccgctgc cacgcaggaa gccgtcaatc
     1681 cacgccatcg actgcaccgg atcgaccgcg ggcgagattg ccaatcccat tcgtcgttcg
     1741 acctcctccg ccgccaaaag cttctgatcg aagagcagac gacaacaccg gccagcgatc
     1801 aatccgtgaa gacctgcctg gtccacgagt tgacccagga cataattcca atccgaagtt
     1861 aaatccggat tctgaagagt caacagcgcg gtgtgcacgc gcatcagccg gtcatacatc
     1921 tcttcggccg cctcgtcgtt gagcgcggaa cacgcgttcg gaagaccgat gacgatgcgg
     1981 gtcatgagac cgtcgacgac ctgttggacc atcgccgtat cagtctgccg cacgttgccg
     2041 tagcgcaaca cacctgcgag tgaaggcagc gcttccatcg cgtgcggaat gtcgttcgac
     2101 agcgccgcga cctgctccag ccgcgtcatc acgtgatcga tcgcttcggg taagtcggcg
     2161 agcaacgcgt cttccaccag cgacgtcaac gccggtaact cctgtgcgcg atcagcagcg
     2221 gcacgggcgg aggcactcgc tgcgctcgct acagtgttgc cccagatatt cgcctcgatg
     2281 acagacaccg caaactccgg ttgccactga agccgccaca actcgcgaaa cgttcccttg
     2341 cccgtcgcct gctccatcgt tccccaagga atgtcgagca ggcgcaagcg atgcaacagc
     2401 cggctgcgat cgagatcgtt tggcttacgc agatcgaagt cacgcacttc ctgcgtcgct
     2461 tccggcggca gacgcaatcg tttctgttcg cgttgaagat cttgttgtag cggcagactc
     2521 ggcgtcgcat caggaacctg gcctaacagc tcgccgacga tcagcttctc gctgatcaac
     2581 tgcatcgggg tgtcgtcgcc aaaacagaac accgctcgca ccgcatcgtt gaattcagac
     2641 aaaccgggca ccgggcgatc gcgcaaagcc gcgagcgaat ggccgagtcg aaccgcttca
     2701 atcacactcg ccgacgacgc atcaagatcc tgcccgcgca atagttgtgc gacgcggatc
     2761 atccaacgca ccgtcacgtc gtcaggcccg gaccaaagat gctggtaata acccggcgat
     2821 tcgatgcccg cgccgtaacc gctccagtaa gtcaaacggc ccatggtcca tggcacccac
     2881 gtcgcgctcg tttttacttt tgccaggcct ttgagcagcg cggtgtcggc tttcgccggc
     2941 ggcatgtttt ccaaaaccgg cccatgccac gcgctacaga cgacggcgat tctttcgaaa
     3001 ccctcgcgct cggccgcgcg aatgctctgt cgcatgtacg cctcgcgcaa atcttcgcgc
     3061 ggctccggct tcgattcgtc gagcttgccg acctcttcgc gcaaagcaga catcaactcc
     3121 atgatcgctt tgaacgactc ggtgctgtcg cgccggtgtt cgatcgtgtg gtcccaccag
     3181 cgctcgctgt cgctgtagcc ggacgcctcg gcaatccaac gcaacggatc gcgccgaacc
     3241 tctgtcgcag tttgtgattc ttcactctcg ctatcactct cgagcgcaaa ctggtgccac
     3301 tgcggcaggt ccatgaaacg caccgggacc tgttgggcca ggccaaattg aatcgcctgc
     3361 cattccggtg agaactccgc gaacggataa aaaaccgccc gcttcggttc gttcggcaga
     3421 tagaccagca acgcaacagg cggacgcatc tgctcgtcag ccgcgaacgc gacgagctcg
     3481 ttcgcatccg gcggtccttc gatcagaatc acgtcaggat tcagcgcgcg cagcgcctgc
     3541 cagaggctgc gtgccgaacc cggaccgtga tgtctgatgc c
//
LOCUS       DASWTX010000824         1956 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_183286, whole genome shotgun sequence.
ACCESSION   DASWTX010000824 DASWTX010000000
VERSION     DASWTX010000824.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1956
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183286"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..774
                     /locus_tag="VGD38_12480"
     CDS             <1..774
                     /locus_tag="VGD38_12480"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YicC/YloC family endoribonuclease"
                     /protein_id="HEY0728882.1"
                     /translation="RAGAELASLEPAIKKRITSRLTRGRVDVSVSLERTSQMVYELNR
                     PLIAGYVTALKQLQQDFQIAGELDINVLARIPGALQPARNGIDERIVTALDAAVDQAL
                     DELEHMREQEGEALKNELRDRVNKIESVVPTIESAAAGLAEAYRVRLQKRIGELLNRG
                     GQVVEIDPARLAQEVAYLADRSDVSEEMVRLRSHLTQFQEALDAPGETGKMLDFLLQE
                     LNREANTTLSKSTDLVIKEAGLAIKAEVEKLREQVQNVE"
     gene            764..1441
                     /gene="gmk"
                     /locus_tag="VGD38_12485"
     CDS             764..1441
                     /gene="gmk"
                     /locus_tag="VGD38_12485"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR03263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004385 - guanylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEY0728883.1"
                     /translation="MSSKVTEILSATQVRNSPACRGTLFVVSSPSGGGKGTIIRHVLD
                     EVPNLSYSVSFTTRTPRPGEVNGREYFFISREVFDEMVAAGEFLEWACVHGNYYGTAK
                     RQVADETAAGIDIVLEVDVQGAASVRQLLLDSVSIFILPPSYEVLKGRLIARGTDTPE
                     ELAVRLRNAPDELRQYSAFDYVIINDEVDRAVAQLASIIYAERARCVRQENLVREVIE
                     KFKPAED"
     gene            1494..1736
                     /gene="rpoZ"
                     /locus_tag="VGD38_12490"
     CDS             1494..1736
                     /gene="rpoZ"
                     /locus_tag="VGD38_12490"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF013365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HEY0728884.1"
                     /translation="MATTTELVENDMEAAGVPEVDSKYRLIILAAKRSKQLQRGANPR
                     IDIDPQKHKPTRIALEEVIRGRVHFDIKPQDPQAAH"
BASE COUNT          457 a          534 c          575 g          390 t
ORIGIN      
        1 cgcgcaggcg ccgaactcgc atcactcgaa cccgccatca agaaacgtat cacttcgcgt
       61 ttgacgcgcg ggcgcgtgga cgtcagcgtc agtctcgaac gtacgtcgca gatggtctac
      121 gagctcaacc gcccgctgat cgccggttac gtcaccgcgc tgaaacaact ccagcaggat
      181 tttcagattg ccggcgaact cgacatcaac gtgctcgctc gtattcccgg tgctttgcaa
      241 ccggcgcgta acggcatcga cgaacgcatc gtcaccgcgc tcgacgccgc cgtggaccag
      301 gcgctcgacg agctcgagca catgcgcgaa caggaaggcg aagcactcaa aaacgaactg
      361 cgcgatcgcg tcaacaagat cgagtctgtc gtgcccacga tcgaatcagc cgcggccgga
      421 ctcgccgaag cgtatcgcgt gcgtttgcaa aaacggatcg gcgaactgct caatcgcggc
      481 ggacaggtcg tggagatcga tccggcgcgg ctggcccagg aagttgctta tctcgcggac
      541 cgcagcgacg tcagcgagga aatggtgcgt ttgcgcagtc accttactca atttcaggaa
      601 gcgctcgatg ctcccggaga aaccggaaag atgctcgact ttctgttgca ggaactgaac
      661 cgtgaagcga ataccacgct ttccaagtct actgatttgg tgatcaaaga agctgggctg
      721 gcaatcaagg cagaggtcga aaaacttcgc gagcaggttc agaatgtcga gtaaagtgac
      781 agaaatccta tcagcgactc aagtgagaaa ctcccccgcg tgtcgaggca cactgttcgt
      841 cgtcagctca ccttccggcg gcggcaaggg cacaattatc cgtcacgtct tggacgaagt
      901 gccaaatctt agctattctg tgtcgtttac aacccggacg ccgcgcccgg gtgaggtgaa
      961 tggccgcgag tatttcttta tcagccggga agtttttgac gagatggtgg cggccggcga
     1021 gtttctcgaa tgggcctgcg tgcacgggaa ttattacggc acggcgaaac gccaggtagc
     1081 tgacgagact gccgcgggca tcgatattgt attggaagtc gatgttcagg gcgctgcgag
     1141 tgtgcggcag ttgttgttgg attcggtgag catctttatt ttgccgccgt cttacgaggt
     1201 tcttaaggga cggctgatcg cgaggggcac ggatacgccc gaggagcttg cggtcaggtt
     1261 gcgcaacgcg ccggacgagt tgcggcagta ttcagctttc gattacgtca ttattaacga
     1321 cgaagtggac cgcgctgtgg cgcagctcgc ttcgatcatt tatgccgagc gggctcgttg
     1381 tgtgcgccag gaaaatctgg tgcgcgaagt gattgagaag ttcaagccgg cggaagatta
     1441 atcagcacta ctgacaaagc aagtgcaccg atacgacgag aaggagcaat cgagtggcaa
     1501 cgacgacaga gttggttgag aatgatatgg aagcggctgg agtaccggaa gtagattcga
     1561 aatatcgcct catcatcctc gcagcaaaac gcagcaagca gctacaacgc ggcgcaaacc
     1621 cgcgcatcga catcgaccct caaaaacaca aaccgacgcg aatcgcgctc gaggaagtca
     1681 ttcgcggccg ggtccacttc gacatcaaac cgcaagatcc ccaggcggct cattaggccc
     1741 gcaggcgagt cattaggccc aagcggctca ttaggttgga tatgaacgat ccaccaactt
     1801 cgttggtggg attacattga gctttgttag gtggggtagg caggatctga agataccacc
     1861 aactaaggtt ggtggtattc cgcaccgctc ctctatcctc gtctccgcaa cgcgcctatc
     1921 ccaccgacga agtcggtggt gtttatagat ccaacc
//
LOCUS       DASWTX010000825         3734 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_227611, whole genome shotgun sequence.
ACCESSION   DASWTX010000825 DASWTX010000000
VERSION     DASWTX010000825.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3734
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227611"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..842
                     /locus_tag="VGD38_12495"
     CDS             <1..842
                     /locus_tag="VGD38_12495"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HEY0728885.1"
                     /translation="VDPGNPQFLTHNIPKVVGGVTEDSTAVAAQLYSQIVRDVHAVSS
                     ARVAEAAKLLENTFRAVNIGMANEMARLCYALNIDTWEVIRAAATKPFGFMAFYPGPG
                     IGGHCIPLDPHYLSWKARQHGFDSRFISLAEEVNSRMPEHVVQLVADGLNDERKAMNG
                     SSVLLLGVAYKKDVNDVRESPALSIIDRLRAKGANVSYHDPFVSEVRFDDAHTDANGE
                     PLNSVELSDEQLKAADCVIIVTDHSDIDYGRVCRLAPLIVDTRNALNGDLRRDSKARI
                     IRL"
     gene            845..1954
                     /gene="wecB"
                     /locus_tag="VGD38_12500"
     CDS             845..1954
                     /gene="wecB"
                     /locus_tag="VGD38_12500"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR00236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HEY0728886.1"
                     /translation="MLKIINVVGARPNFMKVAPIVAAMKRAPSRFLPLVVHTGQHYDA
                     AMSDSFFQDLKLPQPDMHLGVGSGSHAAQTAAVMERFEPVVLQEKPDWVLVVGDVNST
                     LACALVCVKLGIKVAHVEAGLRSRDRTMPEEINRLLTDQIADLLLTPSEDAGANLRAE
                     GIPAERIRFVGNVMIDSLLQNLEQARQSRARVDLGVADADYAVLTLHRPSNVDQRETF
                     TRILLALETIAEKLPVIFPVHPRTRKTIAQLGLSDRVASIENLRLIEPLGYLDFLNLY
                     SGARLVLTDSGGIQEETTALGIPCLTLRENTERPITVELGTNVIVGTDTARIVTAAKA
                     ALNGSAKKTTSQPPLWDGHTSERILAALEEHSLRS"
     gene            1962..>3734
                     /locus_tag="VGD38_12505"
     CDS             1962..>3734
                     /locus_tag="VGD38_12505"
                     /inference="COORDINATES: protein motif:HMM:NF019552.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alginate lyase family protein"
                     /protein_id="HEY0728887.1"
                     /translation="MALVRKLKRALRGEVKLTTAAQEVVRRTLMTAMTRRERRNLDKE
                     RPLLLKPPFSQMSPTELLSHFQNKKPISLPFDFNPGPSDVPVRDVVEWRRDPRSGYLW
                     PLDYHRDLKLQRSDGSDVRLVWELNRLSHLLRVENADEFFNQLRSWHDQNPYARGPNW
                     SCAMEVALRAINILAAFERLRKSPQLDPEALIFLLTLLQQHGLFIGTNLEFSYIATSN
                     HYLSDVAGLLWLEVLLPELEDADDWRELALPALLREMDKQVLADGADYESSTGYHRFV
                     LELFLYSFMLCRENGREIDTRYWRKLRQMLEYVKAYIRPDGLAPLIGDTDGGQVLPFR
                     EYSADDHAYVLDIGAQVLNAPDLLYPQEKSKAFPDAGIYIMRHSDCYLCFNASGAGIN
                     GRGSHGHNDALSIEVSARGRAFIVDPGTYVYTANPEMRHAFRSTAYHSTVKIDGQEQN
                     TTEVNTPFVIGNEAQPRVLEWQSNENYDKVVAEHYGYRRLSSPVTHRRAVTFNKNECS
                     WLIEDEFFGDGEHEFEAWFHFANGLQLEVRGAEIEATDEKQDFGLVVRSLSLNEAPTL
                     VNQHVSRNYGELIDSVSACWRISGR"
BASE COUNT          795 a         1052 c         1108 g          779 t
ORIGIN      
        1 gcgtcgatcc gggcaatccg cagttcctga cgcacaacat tccgaaggtc gttggcggcg
       61 tgacggagga ttcgaccgcg gttgcggcgc agctgtattc gcagatcgtg cgggacgttc
      121 atgcggtgag ctcggcgcgc gtggcggaag cggcgaagct tttggaaaac acgtttcgcg
      181 cggtgaacat tggaatggcg aacgagatgg cgcggctttg ttacgcgctg aacatcgaca
      241 cgtgggaagt gattcgcgcg gcggcgacga agccgtttgg gttcatggcg ttttatcccg
      301 ggccgggaat cggcggtcac tgcatcccgc tcgacccgca ttatctttcg tggaaggcgc
      361 ggcaacacgg ttttgattcg cgcttcatca gtctggccga ggaagtgaat tcgcgcatgc
      421 cggagcatgt cgtgcagttg gttgcggacg ggttgaacga cgagcgcaag gcgatgaacg
      481 gatcgagtgt tttgttattg ggtgtggctt ataagaaaga cgtgaacgat gtgcgcgaga
      541 gtccggcgtt gtcgatcatc gaccgtttgc gtgcgaaggg cgcgaacgtg agttatcacg
      601 atccgtttgt gtcggaggtg cgttttgacg atgcgcacac ggatgcgaat ggcgagccgt
      661 tgaattcggt cgagctgagt gatgaacagt tgaaagccgc ggattgcgtg atcatcgtga
      721 cggatcacag cgacatcgac tacgggcgcg tctgccgtct cgcgccgttg atcgtcgaca
      781 cgcgcaacgc gctgaacggc gatctgcgcc gggatagtaa ggcccgcatt atccggcttt
      841 aatcatgctc aaaataataa acgtcgtcgg cgcgcggccg aatttcatga aggtggcgcc
      901 gattgtcgcc gcgatgaagc gtgcgccgtc gcggtttctg ccgctcgtgg tccatacggg
      961 acagcactac gacgcggcga tgtctgattc gttttttcaa gacctcaaac tcccgcaacc
     1021 cgacatgcat ctcggcgttg gctccggctc acacgccgcg caaacagccg cggtgatgga
     1081 gcgtttcgaa cccgtcgtac tccaggaaaa accggattgg gtgctggtcg tcggcgacgt
     1141 gaactcgacg ctcgcgtgcg cgctcgtgtg tgtgaagctc ggcatcaagg tggcgcacgt
     1201 cgaagcgggt ttgcgcagcc gcgatcgcac gatgcccgaa gagatcaacc gcctcttaac
     1261 cgatcagatc gccgatctgt tattgacgcc atccgaagac gcgggcgcaa atctgcgcgc
     1321 cgaaggcatt ccagccgaac gcatacgttt cgtcggcaac gtcatgatcg attcgctgct
     1381 gcaaaacctg gaacaggcgc ggcagtcgcg cgcgagagtt gatctcggcg ttgctgatgc
     1441 ggattatgca gtgttgacgc tgcaccgtcc gtcgaacgtc gatcaacgcg agacgttcac
     1501 gcgcatactc ttggcgctcg agacgatcgc ggaaaagctg cccgtgatct ttccggtcca
     1561 tccgcgaacg cgaaagacga tcgcacagct tggcttgagc gatcgcgtcg cgtcgatcga
     1621 gaacctgcgg ctgatcgagc ccctaggcta tctcgatttt ctaaacctct acagcggcgc
     1681 gcgactcgtg ttaaccgact ccggcggtat tcaggaagaa acaaccgcgc tcggcatccc
     1741 gtgtttgacg ttgcgcgaaa acaccgagcg gccaattact gtggaactcg gcaccaacgt
     1801 catcgtcggc accgacaccg cgcgaatcgt caccgccgct aaagccgctt tgaacggctc
     1861 agccaaaaaa acaaccagcc agccacccct ttgggacgga cacacttccg agcgcatact
     1921 cgccgcgctc gaagaacact cgcttcgctc gtaactcgcc aatggctctt gtcagaaaac
     1981 tcaagcgtgc tcttcgtggc gaagtaaaac taaccaccgc ggcccaggaa gtagtgcggc
     2041 gtacgttgat gaccgcgatg acccgtcgcg agcgaagaaa tctcgacaaa gaaagaccgt
     2101 tgctgctgaa gccgcctttc tcgcagatga gccccacgga attactctcg cactttcaaa
     2161 acaagaaacc gatctcactt cctttcgatt ttaatcccgg tccttctgac gtgcccgtgc
     2221 gggacgtggt cgaatggcgc cgcgacccac gctcgggtta tctctggccg ctcgattatc
     2281 accgtgatct gaaactccag cgctccgacg gctcagacgt gcgcctcgtc tgggaactga
     2341 accgcttgag ccatctgctc agagtcgaga acgcggatga attctttaat caactacgaa
     2401 gctggcacga ccaaaacccg tatgcccgcg gtccaaattg gagctgtgcg atggaggtgg
     2461 cgctgcgcgc gataaatatc ctggccgcct tcgaacgtct acggaagtca ccccagcttg
     2521 accccgaggc tttgatcttt ttgctgacgc tgctacagca acatggcctc ttcataggaa
     2581 cgaacctgga gttttcgtat atcgcgacca gcaatcacta tctctcagac gtcgcgggac
     2641 tgctgtggtt agaagtgctg ttgccggaat tggaggacgc cgatgactgg cgcgagcttg
     2701 ctttgccggc actgttgcgg gagatggata agcaggttct ggcggacggc gcggattatg
     2761 aatcctcaac cggataccat cgcttcgtgc tggagttgtt tctctactcg ttcatgttgt
     2821 gccgcgaaaa tgggcgagag atcgacacga gatactggcg caagctgcga cagatgctcg
     2881 aatacgtcaa ggcttacatt cgacctgacg gactcgcgcc gctcatcggc gatacagacg
     2941 gcggccaggt gctgccgttt cgtgaataca gcgcggacga tcacgcgtac gttttggaca
     3001 tcggcgccca ggtattaaac gctcccgatc tgttgtatcc gcaggagaag tcgaaagcgt
     3061 ttcccgacgc cggcatttac atcatgcgtc acagcgattg ttacctctgc ttcaacgcaa
     3121 gcggcgccgg gatcaacggc cgcggttcac acggtcacaa cgacgcgctg agcatcgaag
     3181 tctctgcacg cggccgcgca ttcatcgtcg atccgggaac ttacgtctac actgcaaatc
     3241 ccgaaatgcg tcacgcgttt cgttccaccg cctatcattc gaccgtaaag atcgacgggc
     3301 aggaacaaaa cacgaccgaa gtaaacacgc cctttgtgat cggcaacgaa gcgcagccac
     3361 gcgtgctcga atggcagtcg aacgagaact atgacaaggt tgtcgcggaa cactatggct
     3421 accgccgcct aagctctccg gtgacgcacc gccgggctgt gacgttcaac aagaatgaat
     3481 gttcgtggtt gattgaagac gagttttttg gtgatggaga gcacgagttt gaggcctggt
     3541 ttcatttcgc caacggtttg cagcttgaag tcagaggagc ggagatcgaa gccacggatg
     3601 aaaagcagga tttcgggttg gtggtgcgtt cgttgagtct taatgaagcg cccacgctcg
     3661 tgaaccaaca cgtctcgcgc aactacggcg aactgatcga ctcggtgtct gcgtgctggc
     3721 gtatcagcgg ccgg
//
LOCUS       DASWTX010000826         4067 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_120170, whole genome shotgun sequence.
ACCESSION   DASWTX010000826 DASWTX010000000
VERSION     DASWTX010000826.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4067
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120170"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..942)
                     /locus_tag="VGD38_12510"
     CDS             complement(<1..942)
                     /locus_tag="VGD38_12510"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0728888.1"
                     /translation="MIKDLRYGLRMLTKNPGVSAIAVLTLALGIGANTAIFSVVSAVL
                     LNPLPYKDPDRLVSIWENVPEHGRWRAAPANFLDWKKQNTVFEDVAAFGGSTATLTGD
                     GDPEQLSGTAVTPGYFEVVGIQPAHGRVFQPEEYQPGRDRVVILGHGLWQRRYGGDKN
                     IVNRSIILDSNSWTVVGVMPPGLYPTRPTTAGRIDFDERGQDYWRPMSYIANLAALRS
                     AHILGVLARLKPEVTFEQATAEMNTIGARLAQEHAENKDEGIIVNRFMNEVVGDVRPA
                     LVTLLVAVGLVLLIACANIAGLLLAQHAARTKEIAIRA"
     gene            complement(964..3657)
                     /locus_tag="VGD38_12515"
     CDS             complement(964..3657)
                     /locus_tag="VGD38_12515"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0728889.1"
                     /translation="MPDWKDEVKRRLRGLQVSPVNEAEIVEELAQHLDDVYQRALRNG
                     ASEENARRAALSELNAEHSLLTELQRTQKRPPAEPPLPGESRRLNLLADFLQDLRYAS
                     RMLLKNPGFTAVAVIALALGIGANTAIFSVVNAVLLRPLQFRDPDRLVMIWEDATFAG
                     FPRNTPAPANYVDWKTQTQSFEDMAASAESTFNLTGDGDPERVAAYKVTANFFPLFGV
                     SPALGRGFVAEDDRPGAAKVAVLSHELWQARYGSDRQIVNRDIQLDGEKYTVVGVMPQ
                     GFQFLESDVRLWVPLALDAEDWANRGGHFLKVVARMKPGVTLDHAQADLSAVMARVAK
                     DNPGETFDGKLGAFAVPLREQLAGDVRSSLVVLLVAVAFVLLIACANVAGLLLARAVG
                     RRREIALRIALGASRMRVVRQLLTESLLLAAAAGVIGSILAYWSFAFLQKLIPEEMAL
                     LTSLTLDTRILVFTLLVSLLTGVIFGLVPALQSAKVDLNDALKQSTRVTATSKLRSAL
                     IVFEVAASVVLLVGAGLLVQTLFQLFNQYSVLQPEKVLTMRTVLPQTKYKEHPQRHAF
                     YQQVLERVQHLPGVISAGYTTSVPLLWKGGTSGFTPEGITSPIPGMAYDANHREVSAD
                     YLKTMNIALREGRYFDKRDNETSMRVAIINETMARQYWPGENALGRRFNIGDPNDGEW
                     MEIVGIVGDVRQMGLDEPVKAEMYVPYQQVTDWPFFVPRDLAIRTSGDTSSLVGSVRQ
                     IIREIDPDQPVSNIATMSDVLGVEAEQRRMGMIMTVAFAGLALLLASLGIYGVLAYFV
                     TQHTNEIGVRIALGASRFNILALVLKKGMSLTLLGVAIGVAAAFALTRLMSSLLFGVK
                     AFDPLTFVTVPLLLAAVALLACWIPARRATKVDPMIALRYE"
     gene            complement(3650..3982)
                     /locus_tag="VGD38_12520"
     CDS             complement(3650..3982)
                     /locus_tag="VGD38_12520"
                     /inference="COORDINATES: protein motif:HMM:TIGR03433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEY0728890.1"
                     /translation="MLDRELKKGSAELLILSLLETQPRHGYDIGTLIEQRSKGRLRFN
                     VASLYPLLYRLEKRGWIQGRWVEKPGQRRRRYYRLTAEGRKILKAQRNSWREFVEAIN
                     RITGLEHA"
BASE COUNT          866 a         1273 c         1125 g          803 t
ORIGIN      
        1 ggcgcgaatc gcgatctctt tcgtgcgcgc ggcgtgttgg gccagcaaga gcccggcgat
       61 gttggcacac gcgatcaaca acacgagtcc caccgcaacc agcaacgtta caagcgccgg
      121 acgcacatcg ccgacgacct cgttcataaa ccggttgacg atgattccct cgtccttgtt
      181 ttcggcgtgc tcctgcgcga gacgcgcgcc gatcgtgttc atttctgctg ttgcctgttc
      241 gaatgtgact tcaggcttca gtcgcgccag cacgccgagg atgtgtgcac ttcgaagcgc
      301 agcgaggttc gcgatgtaag acatcggtcg ccaatagtcc tggccgcgtt cgtcaaaatc
      361 gatgcggccc gcagtcgtcg gacgcgtagg gtaaagaccc ggcggcatca ccccgacgac
      421 ggtccaactg ttgctgtcaa gaatgatgct gcggttgacg atgttcttat cgccgccgta
      481 gcgacgctgc caaagaccat ggcccaggat gacgacgcga tctcttccgg gttgatactc
      541 ttccggctga aagacacggc catgcgccgg ttgaataccg accacttcaa agtagccggg
      601 tgtcactgcg gttcccgaca gttgctccgg atcgccatcg cccgtgagcg ttgcggttga
      661 accgccaaac gccgcgacgt cttcaaaaac agtgttctgt tttttccagt cgaggaagtt
      721 cgcgggcgcc gcgcgccagc gcccgtgctc cggcacgttc tcccagatcg acacgagccg
      781 atcaggatct ttgtaaggca gcggattcaa caacaccgca ctgacgacgc taaagatcgc
      841 ggtgttcgcg ccgatgccga gcgcaagtgt gagcacggca atcgcagaca caccgggatt
      901 tttggttaac atccgtaacc cgtagcgcag gtccttaatc ataatttgtg taatctgtgg
      961 tttttactcg taccgaagcg cgatcatcgg atcgactttc gtcgcccttc gcgcaggaat
     1021 ccaacacgcg agcaacgcca ccgccgcaag cagcaacggc accgtcacaa acgtcaacgg
     1081 atcaaaagct ttcactccaa acaacagcga actcatcaaa cgcgtcaacg caaaagccgc
     1141 cgcaactccg atcgcgacgc ctaacaacgt caagctcatt cccttcttca gaacgagcgc
     1201 gaggatgttg aagcggctgg cgccaagcgc gatacgcacg ccgatctcgt tcgtgtgctg
     1261 cgtgacgaag tacgcgagca cgccgtagat tccgagcgac gcgagcaaca gcgcgagtcc
     1321 ggcaaacgcc acggtcatga tcatccccat gcgacgttgt tcggcttcaa cgccgagcac
     1381 gtcagacatc gtcgcgatat tcgagaccgg ttggtccgga tcgatctcac ggatgatctg
     1441 gcgcacggag cctacgaggc tcgaagtgtc acctgaagtg cgaatcgcga gatcgcgcgg
     1501 aacgaagaac ggccagtccg tgacctgctg gtaaggcacg tacatctcag ccttgacggg
     1561 ttcgtcgagt cccatctgcc gcacgtcgcc gacgatgccg acgatctcca tccactcgcc
     1621 gtcattcgga tcgccgatgt tgaagcggcg tccgagcgcg ttttcgccgg gccaatactg
     1681 ccgcgccatc gtttcgttga tgatggcgac gcgcattgac gtttcgttgt cgcgtttgtc
     1741 gaagtaacgt ccctcgcgca gcgcgatgtt catcgtcttg aggtaatcag cgctgacttc
     1801 gcgatggttc gcgtcgtaag ccatgccggg aatcggcgac gtgatacctt cgggagtaaa
     1861 accgctcgtc ccgcctttcc aaagcaaagg caccgaagtg gtgtagcccg ctgaaatcac
     1921 gcccggcaga tgttggaccc gctcgagcac ctgttgatag aaggcgtgac gttgcggatg
     1981 ctctttgtat ttcgtctgcg gcaacaccgt gcgcatggtc agcacctttt cgggctgcag
     2041 cacggagtac tgattgaaga gttggaagag tgtctggacc agcaggccgg cgccgacgag
     2101 caacaccaca gacgcggcga cctcgaagac gatcagcgcg ctacgcagtt tgctggttgc
     2161 cgtaacgcgc gtgctttgct tcaacgcgtc gttcagatcg acttttgctg attgcagcgc
     2221 gggcacgaga ccaaagatca cgcccgtaag caacgagacc agaagcgtga acacgaggat
     2281 gcgcgtgtcg agcgtcagac tcgtcaacaa cgccatctct tcgggaatga gcttctgtag
     2341 aaacgcaaaa ctccagtaag cgagaatcga tccgattacg cccgcagccg ctgcgagcaa
     2401 caaactctcc gtgagcagtt gccgcacgac gcgcatgcgg ctcgcgccga gtgcgatgcg
     2461 cagagcgatc tcgcggcgcc gtcccaccgc acgcgcgagc aacaaccccg cgacgttcgc
     2521 gcaggcaatc aacaacacaa acgccaccgc taccagcaac accaccagcg aactgcgcac
     2581 atcaccagcc aactgttcgc gcagcggcac cgcgaacgcg ccgagcttac cgtcaaacgt
     2641 ttctcccgga ttgtccttcg ccacgcgcgc catcacggcg gaaagatccg cctgtgcatg
     2701 gtccaacgtc acgcccggct tcattcgtgc gacgactttc aaaaagtgac cgccacgatt
     2761 ggcccagtcc tcggcgtcga gcgcaagagg cacccacaac cgcacgtcac tttctaaaaa
     2821 ctgaaacccc tgcggcatga cgccgacaac ggtgtatttc tcgccgtcga gttgaatgtc
     2881 gcgattaacg atctgtcgat cgctgccata gcgcgcctgc cagagttcgt gactcagcac
     2941 ggcaactttc gcggcgccgg ggcgatcgtc ttccgcaaca aagccacgcc cgagcgcagg
     3001 cgacacacca aacagcggaa agaagtttgc cgttactttg tacgctgcga ctctttcggg
     3061 atcgccgtcg ccagtcagat tgaaagtcga ctcggcgctg gcggccatgt cctcaaacga
     3121 ttgcgtctgt gttttccagt cgacgtagtt cgcgggcgcg ggcgtgttgc gcggaaaacc
     3181 cgcgaacgtc gcgtcctccc aaatcatcac cagccgatcg ggatcgcgaa actgcaacgg
     3241 cctgagcagc acggcattga cgacactgaa gatcgcggta ttagcgccga tgccgagcgc
     3301 gagtgcgatc acggcgacag cggtgaagcc cggatttttc aaaagcatgc gggacgcgta
     3361 gcgcaggtcc tgtaagaaat cggctaacaa gttcaacctc ctcgattcac ccggtaacgg
     3421 tggctccgcg ggcggacgtt tttgagtgcg ttgcagttcg gtgagcaacg agtgttcggc
     3481 gttgagctcg ctcagcgccg cgcggcgtgc gttctcttca ctcgcgccgt ttctcagcgc
     3541 gcgttggtaa acgtcgtcga gatgttgggc caactcctcg acgatctctg cttcgttcac
     3601 aggcgacacc tgcaaaccgc gcagccgtct tttaacttca tctttccagt caggcatgtt
     3661 cgagcccggt aattcgattg atcgcctcga caaactcgcg ccaactattg cgctgcgcct
     3721 tcaggatctt tcgtccttct gcggtcaggc ggtaataacg gcggcggcgc tgtcccggct
     3781 tctccaccca gcgcccctga atccacccac gcttctcgag ccgatagagc agcggataaa
     3841 gcgaagcgac attgaaccgc agccttccct tcgatcgctg ttcgatcaaa gtcccgatgt
     3901 catacccatg cctcggctgc gtctcgagca acgacagtat cagcagctcc gcacttccct
     3961 tcttcaactc ccgatcgagc atttgcgaac ctatatatgt cataggcata tattatgcag
     4021 gcacacgtag accgtcaaca cacgaatttt cggagttggg attcaac
//
LOCUS       DASWTX010000827         2204 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_100252, whole genome shotgun sequence.
ACCESSION   DASWTX010000827 DASWTX010000000
VERSION     DASWTX010000827.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100252"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1355
                     /locus_tag="VGD38_12525"
     CDS             <1..1355
                     /locus_tag="VGD38_12525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002506219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HEY0728891.1"
                     /translation="DRLTEFFEQNPPVARKIVGKALDAARAREAARKAREIVRKGALG
                     GGMLPGKLADCQERDPVLSEIYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKAR
                     FDKMLGHSEIKSLITALGTGIGKDDFDLSKLRYHKIILMTDADVDGSHIRTLLLTFFY
                     RQMPALVENGHVYIAQPPLFKVKRGKKEEYIKDEGSMIRYLMRQATSDMSVKSAGASQ
                     AIEGRDLARALERMVDFKRYCERAARRLGGDAHMLSILLESLSGRKGILRKEGLNLRK
                     VFQDGDLMAKIEGALHKAGYKTELTPDEEHGLWEIETVTSTGMNIIVDWNFASYVEFQ
                     QAVDLFKSLEDELAAPFVSGENGTSEEVPTREALLEKVLAAAKKDLSIQRYKGLGEMN
                     PDQLWETTMNPEKRTLLEVRVDDAVETDSIFTVLMGDAVEPRRKFIEDNALDVRNLDV
                     "
     gene            complement(1447..>2204)
                     /gene="amrA"
                     /locus_tag="VGD38_12530"
     CDS             complement(1447..>2204)
                     /gene="amrA"
                     /locus_tag="VGD38_12530"
                     /inference="COORDINATES: protein motif:HMM:TIGR04335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AmmeMemoRadiSam system protein A"
                     /protein_id="HEY0728892.1"
                     /translation="KVIAALQANDPQGIVEIDFNLRKLAGECGFRSMLVAIGASTGLP
                     MSCEVMNYEAPFGVGYLVAQLINQPAETKRHDLPRLAREAVEAFIRSGEILPVPRESF
                     AGLLSARAPCFVCLKTLDGELRGCIGTIEPAKETLAQEIVANAISAAMNDPRFDPVGE
                     EELSNLRYSVDVLLPAEKTSFEELDPKVFGVIVEDETNGRRGLLLPDIPGVETAEQQV
                     EIASRKAGISRDTPVKLWRFKVERFREGETEQF"
BASE COUNT          520 a          673 c          598 g          413 t
ORIGIN      
        1 acgatcggct gaccgaattc ttcgagcaga acccgcctgt cgcccgcaag atcgtcggca
       61 aggcactcga cgccgcgcgc gctcgtgaag cggcgcgtaa agcacgcgaa atcgtccgca
      121 aaggcgcact gggaggcggg atgctacccg gcaagctggc tgactgccag gagcgcgacc
      181 cggtgctatc cgagatctac atcgtcgagg gcgattcggc cggcggttcc gccaaacagg
      241 gccgcgatcg aaagaaccag gccatcctcc cgttgaaagg aaagattctc aacgtcgaga
      301 aagcccggtt cgacaagatg ctcggtcaca gcgaaatcaa atcgctcatt accgcgctcg
      361 gcaccggtat cggcaaagac gatttcgacc tgagcaagct gcgttaccac aagatcatcc
      421 tgatgaccga cgccgacgtc gacggctcgc acatccggac gctcctttta accttcttct
      481 accggcagat gccggcgctg gtcgagaacg gccacgtcta catcgctcag ccgccgttgt
      541 ttaaggtaaa acgtggtaag aaggaggagt acatcaaaga cgaaggctcg atgattcgtt
      601 acttgatgcg gcaggcgacc agcgacatga gcgtcaaatc cgctggagca agtcaggcga
      661 tcgaaggccg tgacttggcg agagcccttg agcggatggt cgattttaaa cgttactgtg
      721 agcgtgcggc tcggcggctc ggcggcgacg cccacatgct cagcattctt ctcgaatcac
      781 tcagcggccg caaaggaatc cttcgaaaag aggggctgaa cctgcgcaag gtgtttcagg
      841 acggcgacct gatggcgaag atcgagggcg cgcttcacaa agcgggctat aaaaccgagt
      901 tgacgcccga cgaggagcac ggactctggg aaatcgagac cgtcaccagc actggcatga
      961 acatcattgt cgattggaat tttgcgagct acgtcgagtt ccaacaagcg gtcgatctct
     1021 tcaagtcgct tgaagacgag ttggctgccc cgttcgtgtc cggcgaaaac ggaaccagcg
     1081 aggaagttcc gactcgcgaa gcactgctcg aaaaggtctt ggccgcagcg aagaaagact
     1141 tgtcgatcca gcgttataaa ggtctcggcg agatgaaccc ggaccagctt tgggaaacaa
     1201 ccatgaatcc tgaaaagcga acgctgctgg aagtcagagt cgatgacgcg gtcgaaactg
     1261 attcgatctt caccgtgctg atgggcgacg ctgtcgaacc gcgccggaag ttcatcgaag
     1321 acaacgcgct cgacgtgaga aacctggacg tctagtccct ggttcaagca ccttcgggca
     1381 ccgccaatac gcgttttgag ttcaagcttt agcttgccgc gccaagcagc agcctaaagg
     1441 ctgaactcaa aactgctccg tttctccctc acgaaatcgt tcgaccttaa aacgccaaag
     1501 cttgacgggt gtatcgcgcg atatgcccgc cttgcgtgag gcgatctcga cctgctgttc
     1561 cgccgtttcg acgcccggaa tgtccggcaa caacaaacca cgccgtccgt tcgtttcatc
     1621 ttctacaatc acaccaaaca ctttcggatc gagctcctca aacgacgtct tttccgccgg
     1681 cagcagcacg tcaaccgagt aacgcaggtt cgacagttcc tcttcaccca ccggatcaaa
     1741 ccgcggatcg ttcatcgccg cgctgatggc attcgcgacg atctcctggg cgagagtttc
     1801 cttcgccggt tcgatcgtgc cgatgcaccc gcgcaactcg ccgtcgagtg tcttgagaca
     1861 aacaaaacaa ggcgcgcgcg cggacaacaa cccggcgaac gattctcgcg gcaccggcaa
     1921 aatttctccc gaacgaataa acgcttccac cgcctcgcgc gccaggcgcg gcaaatcgtg
     1981 acgtttcgtt tccgcaggct gattgatcaa ctgcgccacg agataaccaa cgccgaacgg
     2041 cgcctcgtaa ttcatcacct cacacgacat cggcaaaccc gtgctcgcgc cgatcgctac
     2101 tagcatcgat ctaaacccgc actcacccgc aagcttccgc agattgaaat ctatttcgac
     2161 aatcccctgc gggtcgttcg cctgcagcgc cgcaataacc ttct
//
LOCUS       DASWTX010000828         3761 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_296472, whole genome shotgun sequence.
ACCESSION   DASWTX010000828 DASWTX010000000
VERSION     DASWTX010000828.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3761
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296472"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(18..692)
                     /locus_tag="VGD38_12535"
     CDS             complement(18..692)
                     /locus_tag="VGD38_12535"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF009668.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA];
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA];
                     GO_process: GO:0098869 - cellular oxidant detoxification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEY0728893.1"
                     /translation="MALRLGDIAPDFTADTTEGPIRFHEWIGDSWAVLFSHPKDFTPV
                     CTTELGYVARSKPDFEKRGVKVIGLSVDPTDSHKKWAEDIKETQGTELNFPVIADPDH
                     KIAELYDMIHPEISDIFTVRSVFVIGPDKKVKLMITYPASTGRNFDEILRVIDSLQLT
                     AKYSVATPVNWKDGDDVIIVPSLSDEAAKEKFPGGWRAPKPYLRITPQPNKQAATTDT
                     AAKSAS"
     gene            847..1671
                     /locus_tag="VGD38_12540"
     CDS             847..1671
                     /locus_tag="VGD38_12540"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HEY0728894.1"
                     /translation="MQIALNGATTMQADLATDFQAAKAAGFDYLEIWAEKLRTFLSHR
                     TSRELNELIAASGVPPLSINSIEHVTFRDAATWNGIKEQCAELSQVAEKIACPFIVVV
                     PSPLPNRAITRDEVIAESSRVLGELCDIAARHNTSLAFEFLGQPDCSVPTLGLAHDIV
                     RATERKNLGLVIDSFHFYAGGSTIEMVEALDPNLLYVFHINDAENLPREQLLDKHRLL
                     PGLGILPLRDLLGAFRKIGYDKVASVEIFRPEYWERDPFELANDALSATRRVLETV"
     gene            1668..2657
                     /locus_tag="VGD38_12545"
     CDS             1668..2657
                     /locus_tag="VGD38_12545"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY0728895.1"
                     /translation="MKLKVGIIGAGYIGGVHAGILARDERVQLVTIHDVDRERAEKLA
                     RTNDARAAESPTEVIERCDAVYITAPNTQHVALTLAALDAGKHVFCEKPLAINISDAE
                     SVFAKSNTTKSVVQVGHNRRFAPVYATLKQLLAEKTPHSAHVKMNRGELLNPVWTGDP
                     SVTGGFLYETPIHMFDMMRFLFGEVESLHAIGSQHEYGEIDDFSVLLKFTNGFHATLA
                     TAADASWLFPFERVEVFCHHATFVTREMETLVCSTNLEGHFTEQSMQQLPRDEKWGYV
                     QEDRAFVDAILNDTPPLVTALDGLMSVELVNAVYESVRSNATIAVRPVSLMAD"
     gene            2734..>3761
                     /locus_tag="VGD38_12550"
     CDS             2734..>3761
                     /locus_tag="VGD38_12550"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY0728896.1"
                     /translation="MSQKAFSAREERAEPSARPVELHSDLYREIFDHSKEAIAIIDPE
                     GFYIQQNGAHFTLLGYPELKAQTLANELDEATFAEMKRQLAETDEFSGETVMRTKNGE
                     ELNIDLSVFTMRSGLGEPHCYVCIKRDITRRKQDELALRRSQSELTDFFDNASVGLHW
                     VGADGTILRANQAELDMLGYERDEYVGRNIVDFHYDREVIQDILERLREGEVLRDFEA
                     RLRCKDGSLKSVRIDSSAYFEDGKFVHSRCFTRDITERRRTEHRLALQYAITRIVSRS
                     MDFVEGTHEILETVCESLGWQVGVLWSVDHQEKVLRCVDIWHTPVIDVTEFELASVTT
                     AFGKGKGLP"
BASE COUNT          809 a         1138 c         1032 g          782 t
ORIGIN      
        1 ttacgatacg aaaatagcta cgaagcgctc tttgctgccg tgtcggtcgt cgccgcctgc
       61 ttgtttggtt gcggtgtgat acgcagatac ggtttcggcg ctctccagcc gcccgggaac
      121 ttctccttcg cagcttcgtc cgaaagcgac ggcacgatga tcacgtcgtc gccgtctttc
      181 caattcaccg gcgtcgccac gctgtacttc gccgtcaact gcagagaatc aatcacgcgc
      241 aggatctcgt cgaagttgcg gccggtgctc gccgggtaag taatcatcaa tttaactttt
      301 ttgtctgggc cgatgacgaa cacggagcgc actgtgaaga tatcgctaat ctccgggtgg
      361 atcatgtcgt acagttcggc gattttgtgg tccggatcgg caatcacggg gaaattgagt
      421 tccgttccct gcgtttcctt gatgtcctct gcccacttct tgtgcgaatc ggtgggatcg
      481 acactcagac caatcacttt cacaccgcgt ttttcgaagt cgggcttcga gcgggccacg
      541 tagccaagct cggtggtgca gacgggcgta aagtctttgg ggtgggagaa caggactgcc
      601 cagctatcac caatccactc gtgaaagcga atggggcctt ccgtcgtatc cgctgtgaaa
      661 tcgggtgcta tgtcgccaag tcgtaaagcc atttgtcact ctccttctat tgttcagaca
      721 ggacgctttt acaactaatg tccgggcaag tcaaaggctc gaagcctcgg ttttgagttc
      781 aagctttagc ttgtccgccg gcagcctaaa ggctgaactc aaaacgaacc gtgctatgct
      841 tcggcgatgc aaatagcact gaatggcgcc accacaatgc aggctgatct ggccactgat
      901 tttcaggccg cgaaggccgc gggcttcgat tatctcgaaa tctgggctga aaaactccgg
      961 acgtttttga gccatcgcac cagccgcgag ctcaacgaac tcatcgccgc gagcggtgtc
     1021 ccaccgttga gtatcaactc gatcgagcac gttacgtttc gcgacgcggc cacgtggaac
     1081 ggaatcaagg aacagtgcgc ggagttaagc caggtggcgg aaaagatcgc gtgtccgttc
     1141 atcgtcgtgg tcccgagtcc attgccaaac cgtgccatca cgcgcgacga agtcatcgca
     1201 gaatcttctc gcgtgctcgg cgaactctgc gacatcgccg cgcgccacaa cacgtcgctc
     1261 gcgtttgagt ttttgggcca accggattgc agcgtgccga cactcggcct ggcccacgac
     1321 atcgtgcgcg ccacggagcg taagaacctc ggcctcgtga tcgacagttt tcacttttac
     1381 gccggcggtt cgacaatcga aatggtcgaa gctctcgatc cgaatctgct gtacgtcttt
     1441 cacatcaacg acgcggagaa cctgccgcgc gagcagttgc tggacaagca ccgtctgctg
     1501 cccggactcg gcatcctgcc tttgcgtgat ctgctcggtg cgtttcgaaa gatcggttac
     1561 gacaaggtcg cgagtgtcga gatcttccgg cctgaatact gggaacgaga tcctttcgaa
     1621 ctggcaaacg acgcgctcag cgcgacgaga cgcgttctgg aaactgtatg aaactaaaag
     1681 tcgggattat cggcgccgga tacatcggcg gcgtccacgc cgggatactc gcgcgcgacg
     1741 agcgcgttca gctagttacg attcacgacg tcgatcgtga acgtgcggaa aaactcgcgc
     1801 gcacgaacga cgctcgagcg gcggagagtc caaccgaagt tatcgaacgc tgcgacgccg
     1861 tttacatcac cgcgcccaac acgcaacacg tcgcgctcac actcgcggcg ctcgacgcag
     1921 gcaaacacgt cttctgcgaa aaaccactcg ccataaacat ctcggacgcc gaatccgtct
     1981 ttgcgaaatc caacacgacc aaatccgtgg tccaggtcgg acacaaccgg cgcttcgctc
     2041 ccgtttacgc aacactcaaa caactcctcg cggagaagac accacactcc gcacacgtaa
     2101 agatgaaccg tggcgaactg ctgaatccgg tctggaccgg cgacccgtcc gtcaccggcg
     2161 gctttcttta cgaaacgccg attcacatgt tcgacatgat gcggttcctc ttcggcgaag
     2221 tcgaaagcct gcacgccatc ggctcgcaac acgaatacgg cgaaatagac gacttctccg
     2281 tgctgctcaa gttcacaaat gggttccacg ccacgctcgc gaccgccgcc gacgcaagct
     2341 ggctgtttcc gttcgagcgc gtcgaagtct tctgccatca cgcgacgttc gtcacgcgcg
     2401 aaatggaaac cctcgtctgc agcaccaacc tggaaggcca cttcaccgaa cagtcgatgc
     2461 agcagttgcc gcgcgatgaa aaatggggct acgtgcagga agatcgcgcc tttgtcgacg
     2521 cgattctcaa cgacacgccg ccgctcgtca ccgctctcga cgggctaatg tccgttgaac
     2581 tggtaaacgc cgtttacgag tccgttcggt ccaatgcaac catcgccgtg cggccggtat
     2641 ctttaatggc agattagttt agtgctaata tccctttaac ccgacgaaca cccccgcttg
     2701 acctgatccc gcgtagtttt tgggggcgtt ttcatgtcgc aaaaggcctt ctcagcgaga
     2761 gaagagcgcg ccgagccgtc ggcgcggccc gtcgaactgc attccgacct ctaccgcgaa
     2821 atcttcgacc actccaaaga agccatcgcc atcatcgacc ctgagggttt ttatatccaa
     2881 caaaacggcg ctcatttcac cctgctcggc tacccggagc tgaaagctca aactctggcc
     2941 aacgagctcg acgaagcgac cttcgccgag atgaaacgcc aactcgccga aaccgacgag
     3001 ttttccggcg agaccgtcat gcggaccaag aacggcgaag agctcaacat cgatctctcc
     3061 gtcttcacga tgcgcagcgg cctcggcgag ccgcattgtt acgtctgcat caagcgcgac
     3121 atcacgcgcc gcaaacaaga cgagctcgcg ttgcgccgca gccagtcgga gctgactgac
     3181 ttcttcgaca acgcttcagt cggcctgcac tgggtcggcg ctgacggcac gatcctgcgc
     3241 gccaaccagg ccgagctcga catgctcggt tacgagcgcg acgagtacgt cggccgcaac
     3301 atcgtcgact ttcattacga tcgcgaagtt atccaagaca ttctcgagcg gctgcgtgag
     3361 ggcgaagtgt tgcgcgactt cgaagcgcgc ctgcgttgta aagacggctc gctcaaatcc
     3421 gtgcgcatcg attcgagtgc gtacttcgaa gacggaaagt ttgttcactc gcgttgtttc
     3481 acacgcgaca tcacggaacg gcggcgcacc gagcaccggc tcgcgctgca atacgcgatc
     3541 acgcgcatcg tttcgcgttc gatggatttc gttgaaggca cgcacgagat tctcgaaacg
     3601 gtttgcgaaa gtctcggttg gcaggtcggg gtgctgtggt cggtggacca tcaggaaaag
     3661 gtgctgcgtt gtgtcgatat ctggcacacg cccgtgatcg acgtgacgga gtttgaactg
     3721 gcctccgtga cgacggcttt cggcaaaggc aaaggtttgc c
//
LOCUS       DASWTX010000829         1676 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_316988, whole genome shotgun sequence.
ACCESSION   DASWTX010000829 DASWTX010000000
VERSION     DASWTX010000829.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1676)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1676
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316988"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            165..>1676
                     /locus_tag="VGD38_12555"
     CDS             165..>1676
                     /locus_tag="VGD38_12555"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEY0728897.1"
                     /translation="MLRGLFRTKNLDEILSQVGGPQFSLKRTLNAFSVTLIGIGAIIG
                     AGIFATIGTAASGTAERAGAGPSLMLSFVITAIVCGFTALCYAELASMVPISGSAYTY
                     SYATLGEIVAWIIGWDLIIEYAIGNVAVAISWAEFFNRLLRNLGIHVPDWLTSNYRTA
                     TEETLANAPNLFGIPIVFNILAFGIVALITVVLVWGIKESSNFNAFMVLIKILVLLFF
                     VGLALYYVSPATMVDNWQPFQPQGWMGTLTGAAVVFFAYIGFDAVSTVAEETKNPARD
                     LPIGIIASLVICTVLYILVAGVFTGMVPWETVRGWTAAQRGESLTMALETVAPQALWQ
                     NTVIAFGSVIAHTAVLLVFQLGQPRIFFSMARDGLLPSTFASVHPRFKTPHVTTILTG
                     VAVGGIAAFATVDEMVSLTNIGTLFAFILVCLGVTVLRHKDPARPRPFRVPFGPYLLP
                     GLGALSCALLIYFLPEGSYWRFVGWLALGLAVYFSYGYTRSGVGQKMGRPTRTP"
BASE COUNT          304 a          469 c          505 g          398 t
ORIGIN      
        1 ggcgtatttc aaagcggcat gagagtgggc ggaaaaatca gtcgggaaga ggatgtttct
       61 gaacggaaac atgacctcaa cactaagaca ggattgcaag atttacaaga ccatgccaaa
      121 ctccgcaggc ttcctttcga atccactcca tggaggcgga cacattgctt cgcggactct
      181 ttcggaccaa gaacctggat gaaattctat cccaagtagg tggcccacaa ttttcactaa
      241 agcgaacact taacgccttc agcgtcacgc tgatcggcat cggcgcaatc atcggcgcgg
      301 gcatcttcgc gaccatcggt accgccgcgt caggcaccgc ggaacgcgcg ggcgctggtc
      361 catcgctgat gctttcgttt gtcatcaccg cgatcgtctg cggcttcacc gcgttgtgtt
      421 acgcggagct cgcgtcgatg gtgccgatct cgggttcggc gtacacgtac tcctacgcta
      481 ctctcggcga gatcgtcgcg tggattatcg gttgggattt gatcatcgag tacgcaatcg
      541 gcaacgtcgc ggtcgcgatt agctgggcgg agtttttcaa ccggctgttg cgcaatctcg
      601 gcattcacgt gcctgactgg ttaacgtcaa actatcgaac cgcaaccgaa gagactctcg
      661 ccaacgcgcc gaacctgttc ggcataccca tagtcttcaa cattcttgcg ttcggcatcg
      721 tggccttgat cacggtcgtg ctggtttggg gcatcaagga atcctcaaac ttcaacgcgt
      781 tcatggtgct gatcaagatc ctcgtgctgc tgttcttcgt cggactcgcg ctttactacg
      841 tttcaccggc gacgatggtc gacaactggc agccgtttca accgcagggc tggatgggca
      901 cactgacggg cgcggcggtc gtgttttttg cgtacatcgg tttcgacgcg gtcagtacgg
      961 tcgcggaaga aacgaagaat cccgctcgag atctgcctat aggaattatc gcgtcgctgg
     1021 tcatctgcac ggtgctctac attttggtgg ctggtgtgtt caccggcatg gtgccgtggg
     1081 agacagtgcg aggctggact gccgcgcaac gcggcgagtc gttaacgatg gcgctggaaa
     1141 cagtcgcgcc gcaggcgttg tggcaaaaca cagtcatcgc ttttggatcg gtgatcgcgc
     1201 acaccgcggt gttgctggtg ttccagctcg gtcagccgcg tatcttcttc tcgatggcgc
     1261 gtgacggatt gctgccgtca acgtttgcga gtgttcaccc gaggttcaag acgccgcacg
     1321 tcacgacgat tttgacgggc gttgccgtcg gcggtatcgc tgcatttgcg accgtcgacg
     1381 agatggtgag tttgaccaac atcgggacgc tgttcgcgtt cattctggtc tgtctgggcg
     1441 tgacggtgtt gcgtcacaag gatccggcgc ggccgcggcc gttcagggtt ccgtttggtc
     1501 catacctgct gccgggcctc ggcgcgctat cgtgcgcgct gttgatttat ttccttccgg
     1561 aaggttctta ctggcggttt gtgggctggc tcgcgctcgg cctcgcggtt tatttctcct
     1621 acggctacac gcggagcggc gtcggacaga agatgggacg tcccacgcgc acgccg
//
LOCUS       DASWTX010000830         3665 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_384586, whole genome shotgun sequence.
ACCESSION   DASWTX010000830 DASWTX010000000
VERSION     DASWTX010000830.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3665)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3665)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3665
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384586"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1390)
                     /gene="metG"
                     /locus_tag="VGD38_12560"
     CDS             complement(<1..1390)
                     /gene="metG"
                     /locus_tag="VGD38_12560"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR00398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEY0728898.1"
                     /translation="MKNTFYVTTPIYYANSLPHLGHLYTMIVADTIARSKRQRGVDTY
                     FLTGTDEHGINIERAAQKNGRTPQEQADYVVNYFKQMTAAFGLDTEHGGYDIFMRTTA
                     PFHYEGVSEFWRRVAKSKTPKGNDALYKGHYEGWFCAACAAYKTEDEYQKGDPPTCLI
                     HETPLDRVSEESYFFRLSDYDEALLAVFASRPDFIRPEARANEVISFVRGGLQDLSVS
                     RLKTSVSWGIPVPDDPSHTMYVWFDALTNYITAIGFGNQERQRAVGFEKYWPALHLVG
                     KDILRFHAVYWPAFLLAAGVELPRAIVAHGMWVDPNGRKMSKTIGNTIELDVLNKHFA
                     VDAIRYFCLREMVFGQDGRFGYESLIDRSNSDLASGLGNLSSRTLTMIARYCDSRIPS
                     GRIPEEKLLLAKRAGIGTDETVAGFVEHARDQFLMHFENLAFSRALEAAWTVVARVDK
                     MITDAKPWDLAKD"
     gene            complement(1387..1968)
                     /gene="folE"
                     /locus_tag="VGD38_12565"
     CDS             complement(1387..1968)
                     /gene="folE"
                     /locus_tag="VGD38_12565"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: protein motif:HMM:NF006826.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEY0728899.1"
                     /translation="MKANNEVNLELIAQGVRLILEGIGEDLERPGLKGTPQRVAEMYA
                     ELTSGMREDPQQHVTPLPGDTHDEMVIVKDISIASLCEHHLAPFVGRCHIAYIPKGGR
                     ILGISKLARIAETFSRRLQLQERLTTDIANTLFEGLKPLGVMVVIEAEHTCMTLRGVR
                     KADAKTVTSAVLGGFRSDPRTRAEAMALIKGRE"
     gene            complement(1955..3136)
                     /gene="larC"
                     /locus_tag="VGD38_12570"
     CDS             complement(1955..3136)
                     /gene="larC"
                     /locus_tag="VGD38_12570"
                     /EC_number="4.99.1.12"
                     /inference="COORDINATES: protein motif:HMM:NF014072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel pincer cofactor biosynthesis protein
                     LarC"
                     /protein_id="HEY0728900.1"
                     /translation="MRTLYFDCFAGASGDMILGAMVAAGVDANVLREELSRLNVDGFN
                     INFETVDRSGLSATYARVETAHEHKHRHLSDIKHIIESSGVSDAAKKLAIQIFTRLAE
                     AEARVHNEPVDHVHFHEVGALDAIVDIVGAAICFDLLKIDRFVSSPLHVGSGMIQMAH
                     GRFPVPPPAVAELLKGVPFYSTDIQGELLTPTGAAIITTVCEEFGPIPQMKTETTGYG
                     AGTRQYKDFPNVLRVMLGETGGDGATDERLWMIETNIDDMSPQLLGHVMDRAFENGAL
                     DCYFTPVQMKKNRPGVLLSVLCETQQKESLMNLLFTETTTLGVRSYEVTRRALRRSMA
                     RVETQYGPIDVKVAHLNGRIVNEMPEFEQVRAAAAKAGVPLKVVEDAVRSASRDRDES
                     K"
     gene            complement(3133..>3665)
                     /locus_tag="VGD38_12575"
     CDS             complement(3133..>3665)
                     /locus_tag="VGD38_12575"
                     /EC_number="2.3.1.286"
                     /inference="COORDINATES: protein motif:HMM:NF014228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Sir2 family NAD-dependent protein deacetylase"
                     /protein_id="HEY0728901.1"
                     /translation="DYRRDVLRALEPNAAHHAIAGWQDRFAELTLVTQNVDGLHQRAG
                     SRNVVELHGNIWRARCTVCRFVHEIPLEGKRPEVCEECGNALRPDVVLFGEMLPAGAF
                     EFALQQASRCELCFVIGTSGPVYPAASLPEVAKSSGAFVCEINPEPTPLSGLCDEVIT
                     GKAGEVLPQICTERHG"
BASE COUNT          768 a         1177 c          967 g          753 t
ORIGIN      
        1 catccttcgc caggtcccac ggcttcgcgt ccgtgatcat cttgtccaca cgcgccacca
       61 cggtccacgc cgcttccaac gcacggctaa aagccaaatt ctcaaagtgc atcagaaact
      121 gatcgcgcgc atgctcgaca aagcccgcaa ccgtctcatc cgtgccgatt cccgcgcgtt
      181 tggccagcaa caacttctct tcaggaatgc gcccggacgg aatgcgcgaa tcacaataac
      241 gcgcaatcat cgtcagcgtt cggctcgaca agtttccgag accgctcgcc agatcgctgt
      301 tggagcgatc gattaagctt tcataaccga agcgaccgtc ctgcccaaac accatctcgc
      361 gcaaacaaaa gtaacgaatc gcatcaactg caaagtgctt gttcagaacg tccaactcga
      421 tcgtgttgcc gatcgtcttc gacatcttcc gcccgttcgg atcgacccac atgccatgcg
      481 ccacgatcgc acgcggcaac tcaacacccg ccgcaagcaa aaacgccggc cagtaaaccg
      541 cgtgaaaacg aaggatgtct ttcccgacga gatgcagcgc gggccaatac ttctcaaacc
      601 ctacggcacg ttgccgctcc tggttaccaa aaccgatcgc ggtgatgtag ttcgtcagcg
      661 cgtcaaacca aacgtacatc gtgtgagacg gatcgtcagg cacgggaatt ccccaactca
      721 ccgaagtctt cagccggctc acagacaaat cctgcaaacc accgcgcaca aaacttatca
      781 cctcgttcgc gcgcgcttcg ggccgaataa aatccggccg gctcgcgaac accgccagca
      841 gcgcttcgtc gtagtcagac aagcgaaaga agtaactctc ttcggaaaca cgatcgagcg
      901 gcgtctcgtg aatcaggcac gtcggcggat cgcctttctg atactcgtct tcggttttgt
      961 aagcagcaca cgccgcacag aaccaacctt cgtagtggcc tttgtaaagc gcgtcgttac
     1021 ctttcggcgt tttcgatttc gcgacgcggc gccaaaactc actcacgcct tcgtaatgaa
     1081 acggcgcggt ggtgcgcatg aagatgtcgt aaccgccgtg ttctgtgtcg agaccaaatg
     1141 cggcggtcat ctgcttgaag taattaacga cgtaatcagc ctgttcctgc ggcgtgcggc
     1201 cgttcttttg cgcggcgcgt tcgatgttga tgccgtgctc gtcggtgccg gtcagaaaat
     1261 acgtatcgac gccgcgctgc cgcttcgagc gcgcaatcgt gtccgcgacg atcatcgtgt
     1321 agagatggcc caggtgcggc agactgttgg cgtaatagat tggtgtggtg acgtagaaag
     1381 tgttcttcat tcccttcctt tgatgagggc cattgcttcc gcgcgcgtgc gtggatcaga
     1441 acgaaagccg ccgagcacgg cggaggttac tgtcttcgcg tcggctttgc gcacgccgcg
     1501 cagtgtcatg cacgtgtgtt ccgcttcgat cacgaccatc acgccgagcg gtttgagtcc
     1561 ttcgaaaagc gtgttggcga tgtcggtcgt gagccgctcc tggagttgca gccggcgcga
     1621 aaacgtttcg gcgatgcgcg ccagtttcga gatgccgaga atgcgtccgc ctttcggaat
     1681 gtaggcgatg tgacagcggc cgacaaacgg cgcgagatga tgttcgcaca gcgacgcgat
     1741 gctgatgtct ttgacgatca ccatttcgtc gtgcgtgtcg ccgggcaacg gcgtcacgtg
     1801 ttgttgcgga tcctcgcgca tgccggaggt cagttccgcg tacatctccg cgacgcgctg
     1861 cggcgtgcct ttcaatcccg gccgctccag atcctccccg atcccctcga ggatcagccg
     1921 cacaccctgc gcgattaatt ccaggtttac ttcgttattt gctttcatcc ctgtccctac
     1981 tggcgctacg caccgcgtcc tccacgactt tcagcggtac acccgcctta gcggcagcgg
     2041 cgcgaacctg ctcaaactcc ggcatctcat tcacgatgcg cccgtttaag tgggctactt
     2101 taacatctat cgggccatac tgcgtttcga cccgcgccat gctgcgacgc agtgcgcgcc
     2161 gcgtgacttc gtaactgcgc acaccgagcg tcgtcgtttc ggtaaacagc aagttcatca
     2221 acgactcttt ctgctgggtt tcgcaaagca ccgacagcag cacgcccgga cggttcttct
     2281 tcatttgtac cggcgtgaag taacaatcga gcgcgccgtt ttcaaacgca cggtccatca
     2341 cgtgaccgag aagctgcggc gacatgtcgt cgatgttggt ttcaatcatc cacaaacgtt
     2401 cgtcagtcgc gccatctcct ccggtttcgc cgagcatcac ccgcaagacg ttcgggaagt
     2461 ctttatactg ccgcgtgccc gcgccgtagc ctgtggtttc agtcttcatc tgcgggattg
     2521 gtccaaactc ctcgcatacc gtcgtaatga tcgccgcgcc cgtcggcgtc agtagctcgc
     2581 cttgaatatc cgtcgaataa aacggcacgc ctttcagcaa ctccgcgact gccggcggcg
     2641 gcaccggaaa ccgcccgtgg gccatctgaa tcatgccgct gccgacgtgc aacggcgaag
     2701 acacgaaccg atcgatcttc agcagatcaa aacagatcgc cgcgccgacg atgtcgacga
     2761 tcgcatcgag agccccgact tcgtggaagt gaacgtgatc gacaggctcg ttatgcacgc
     2821 gcgcctcggc ttccgccagc cgcgtgaaaa tttgaatcgc aagcttcttc gcggcgtcgg
     2881 aaacgcctga gctctcgatg atgtgtttga tgtccgaaag gtgacggtgc ttgtgttcgt
     2941 gcgccgtctc tacgcgggcg taagtcgcgc tgaggcccga gcgatccacc gtttcaaagt
     3001 tgatgttgaa accgtcaaca ttcagccgcg acaactcttc acgcaacaca ttcgcatcca
     3061 cacccgccgc gaccatcgcg ccgagaatca tgtcgccgct cgcaccggca aaacagtcaa
     3121 agtaaagagt tctcatccgt gtctttccgt gcaaatctgt ggcaaaacct ctcctgcttt
     3181 tccagtgatg acctcgtcgc acaaacccga aagcggcgtc ggctccgggt tgatttcaca
     3241 aacaaacgcg cccgaagact tcgccacctc cggcaaactc gctgccggat acaccggccc
     3301 cgaagtcccg atcacaaaac acagctcgca gcgcgaggct tgctgcaacg caaactcaaa
     3361 cgcacccgcg ggcaacatct cgccaaacag gaccacgtcg ggccgcagcg cgttgccaca
     3421 ctcctcacac acctcgggcc gtttgccttc gagcggaatc tcgtgaacga agcggcaaac
     3481 cgtacagcgc gcgcgccaga tattgccgtg cagttcgacg acgttgcgcg aaccagcgcg
     3541 ttggtgcagt ccatcgacat tctgcgtgac gagcgtcagc tcggcaaaac ggtcctgcca
     3601 acccgcaatc gcatggtgcg ccgcgttcgg ttcgagcgcc cgcagcacat cgcggcgata
     3661 atcaa
//
LOCUS       DASWTX010000831         2047 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_227721, whole genome shotgun sequence.
ACCESSION   DASWTX010000831 DASWTX010000000
VERSION     DASWTX010000831.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2047
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227721"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(35..1309)
                     /locus_tag="VGD38_12580"
     CDS             complement(35..1309)
                     /locus_tag="VGD38_12580"
                     /inference="COORDINATES: protein motif:HMM:NF024825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY0728902.1"
                     /translation="MSSSRNHERLNSKPPTPRSKTLQFRNVLLPAIIVVLALAFSCSR
                     KPQTTEQPDRSTIKIGYFGDLTGPTYNFGQSAMNGVLMAAFQINEYGGINNRQIDVVI
                     HDDRGSAEEAARLTGKLIDQDKVVAVIAGGVSGNSRAAAPKAQSSHIPLISPSSTDPA
                     VTQTGDYIFRACFVDSFQGEVMASFAAETLKAKKAAILFDINSSYGRGLTEYFETSFR
                     KLGGEIVNKQSYTQGDSDFKGQLSSIKAAEPDVIYIPGYYLEVALIAKQARALGLEQP
                     LLGGDGWDAPELWQLGGEALNNSYISTHYSPYDPSPKIQQFVQEYKQRYQNLPPDAHA
                     ALAYDAGLLLFDAIKRAGTTDGPQLRHALANTKNFDGVTGLISMDENRNAVKPAVVLK
                     LQDASFIYQEKIQPKIAEPNSSASPSSPEPRK"
     gene            complement(1302..2006)
                     /locus_tag="VGD38_12585"
     CDS             complement(1302..2006)
                     /locus_tag="VGD38_12585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015605179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0728903.1"
                     /translation="MLTLDNVSVNYGAIEALTGISLHVEQGEVVTLIGANGAGKTTTL
                     RTITGLLEPRSGKITFEGQNIGGTPTHKLVARGISMSPEGRGVFANLTVWENLQMGAY
                     LSRNKSQIAADMDRAFKMFPRLKERESQKAGTLSGGEQQMLAMGRALMSNPRLLLLDE
                     PSLGLAPLVVHTIFEAIDEIKSKGTTILLVEQNAHAALGHSDRAYVLETGRIVMEGPS
                     KDLANDPRIKEAYLGE"
BASE COUNT          375 a          572 c          617 g          483 t
ORIGIN      
        1 aaggtaagcg ccggtgagaa ccggacaatc gactttactt tcgaggttcc ggcgaagacg
       61 gactcgcgga tgaattaggc tccgcgatct ttggctggat cttctcctgg tagataaaac
      121 tcgcgtcctg aagtttcagc acgaccgcgg gcttcaccgc gttgcggttc tcgtccatgc
      181 tgatcaggcc cgtcactcca tcgaagttct tcgtgtttgc gagcgcatga cgcaactgtg
      241 gaccatccgt tgtgcctgcg cgtttgatcg cgtcgaagag taaaagtccg gcgtcgtaag
      301 cgagcgccgc gtgcgcgtcg ggcgggaggt tctggtaacg ctgcttgtac tcctgcacaa
      361 actgttgaat cttcggcgac ggatcgtaag gcgagtagtg cgtcgagatg taggagttgt
      421 tcaaagcctc gccgcccagt tgccagagct cgggcgcgtc ccaaccgtcg ccgccgagca
      481 gcggctgttc caatccgagc gcgcgcgcct gtttcgcaat cagcgccact tcgaggtagt
      541 aacccggaat gtagatcacg tccggttccg cagctttgat cgagctcaac tgtcctttga
      601 aatccgagtc gccctgtgtg tacgactgct tgttcacgat ctcgccgccg agtttgcgaa
      661 agctcgtttc gaaatactcg gtgagaccgc ggccgtacga tgaattgatg tcgaaaagta
      721 tcgccgcctt tttcgctttc aacgtctccg ccgcgaaact cgccatcacc tcgccctgga
      781 aagaatcgac gaagcacgcg cgaaagatgt agtcgccggt ttgcgtgacc gccggatcgg
      841 ttgacgacgg cgagatcagc gggatgtgcg aggactgcgc tttcggcgcg gccgcgcggc
      901 tgttgccgga aacaccgccg gcgataacgg ccacgacctt gtcctgatcg atcagtttgc
      961 ccgtcagccg tgctgcttct tcagcactgc cgcggtcgtc gtgaatcacg acgtcgatct
     1021 ggcgattgtt gattccgccg tactcgttga tttgaaacgc ggccatcagc acgccgttca
     1081 tggctgactg tccgaagttg taagttggac cagtcagatc gccgaagtat ccgatcttga
     1141 tcgtgctgcg atccggttgt tcagtggttt gcggctttcg cgaacacgaa aacgccagcg
     1201 ccagcacgac gatgatcgcc ggcagcagta cgtttcggaa ttgaagagtc tttgagcgtg
     1261 gcgtgggagg tttggaattg agacgttcgt gattgcgtga gctactcacc gagatacgct
     1321 tcttttatcc tgggatcgtt ggccaggtcc ttcgatggac cttccatgac gattcttccg
     1381 gtttcgagca cgtacgcgcg atcggagtgg cccaacgcgg cgtgcgcgtt ctgctcgacg
     1441 agaagaatcg tcgtcccctt ggacttgatt tcatcaatcg cttcaaaaat ggtgtgtacg
     1501 acgagcggcg cgagaccgag cgacggttcg tcgagcagca acaggcgcgg gttcgacatc
     1561 aacgcgcggc ccatcgcgag catctgttgt tcgccgccgg agagcgtgcc ggctttttgt
     1621 gattcgcgtt ctttgagacg gggaaacatc ttgaaagcgc ggtccatgtc agccgcgatc
     1681 tgcgatttgt ttctgctcag atacgcgccc atttgcaggt tttcccacac cgtgagattc
     1741 gcaaacacgc cgcgtccttc gggtgacatc gagatgccgc gcgcgaccag cttgtgtgtc
     1801 ggggtgccgc cgatgttctg gccttcgaaa gtgatcttgc cggagcgtgg ttcaagcaaa
     1861 cccgtgatcg tgcgcaacgt cgttgttttg ccggcgccgt ttgcgccgat gagcgtgacg
     1921 acctcgccct gttcgacgtg cagcgagatg ccggtcagcg cttcgatggc gccgtagttt
     1981 acggagacgt tgtcgagggt cagcattagt cgcctaagta agcttcgatc actttgggat
     2041 cgttttt
//
LOCUS       DASWTX010000832         2339 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_165151, whole genome shotgun sequence.
ACCESSION   DASWTX010000832 DASWTX010000000
VERSION     DASWTX010000832.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2339
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165151"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(79..945)
                     /locus_tag="VGD38_12590"
     CDS             complement(79..945)
                     /locus_tag="VGD38_12590"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY0728904.1"
                     /translation="MASFPIVLVHGIARFDILKVIFREKFNIPDQGDQLAYFKGIRSH
                     LGANGFSVTAPNLPFAGSVEVRAEALRNHVNEVLQRTGSPKVHIIAHSMGGIDSRHMI
                     VDKGMADRVATLTTIGTPHLGTPVADRFTQPGGALLVGTLDRVVDVDGLADLTTAACD
                     QFNRRAEDAEARNSVMYQTYAASEDVTDVFSLLVVSWVLISRQDGDNDGLVSVRSQQW
                     VRELIASDGTRKQIVQRKFPSSADHLNEIGWWDPEEAIIPFLAGASIIQQALNYEREV
                     RDFYLQIAQGLA"
     gene            complement(973..>2339)
                     /locus_tag="VGD38_12595"
     CDS             complement(973..>2339)
                     /locus_tag="VGD38_12595"
                     /inference="COORDINATES: protein motif:HMM:NF015963.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003885 - D-arabinono-1,4-lactone oxidase
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="D-arabinono-1,4-lactone oxidase"
                     /protein_id="HEY0728905.1"
                     /translation="HTTLNIMLNALTFGKFLWLEGRVLNGLFRNWGRRFRYKPRHFEQ
                     PTSEEELIYLIKQAKDLRFFGSAHSFNDGVVADTTLVSLDRYAGVVREDRVNKRLTVK
                     GGTRVRDVVAELLKRGWAFAALPSHDAQSIAGILSTDVHGTGRKWGFVSETVVDLRII
                     DSNGQVKTVGPTDDLFRAAIGGVGAVGVISEVTVQAVDHFHVAQKFEISDLSYVESHL
                     EEIINNNDHVSFYLFPFTTRCQISTWNRTEKPKSFLGPLREFIAISFDALLAAWFGGL
                     MAYTGTLKKFSHATHGLKLGTNLVLESNKAFNRTIYHLHQELEFTVPYEKTWEMSKKF
                     VGLFEYMYLEKPIPYPLFEVRFTPAGHDRTLIGAGRGQRSTWIDLVLNDSNGFEGYYA
                     AAERTMKEVGARPHLGKFCELHTRADMEKLHSTYFTKFLEIRDQQDPQRKFANEFTRR
                     LFGP"
BASE COUNT          530 a          666 c          600 g          543 t
ORIGIN      
        1 gggttggtgt aaccaccgag gcacagaggc acggaaaaga acaacttttt gtgcttcttg
       61 tgcctctttg tggcaggctt acgccaagcc ctgagcgatc tgcaggtaaa agtcgcggac
      121 ctcacgctcg tagttcaatg cctgttggat aatgctcgcg cccgccaaaa acggaatgat
      181 ggcctcctcc ggatcccacc agccaatttc attcaagtga tcggcagaag aaggaaactt
      241 tcgttgaacg atctgcttgc gcgtgccgtc gctggcgatc aattcgcgga cccattgttg
      301 cgaccgaact gaaacgagac cgtcattgtc tccatcctga cggctaatga ggacccacga
      361 aacaacgagc agcgaaaaca catcggtaac gtcctccgaa gcggcgtaag tctgatacat
      421 aacgctgttt ctcgcttcgg cgtcttccgc ccgtcgatta aactggtcgc acgcggcggt
      481 cgtgagatcc gcaagcccat ccacgtcaac cactcgatca agcgtcccta ccaacagtgc
      541 gcctccgggc tgcgtaaatc gatctgctac cggtgtgcca agatgtggcg ttccgatcgt
      601 cgtgagcgtt gcaacgcggt ccgccattcc cttgtcgacg atcatgtgac gagaatcaat
      661 gccgcccata ctgtgggcaa tgatatggac cttcgggcta cccgttcttt ggagcacctc
      721 gttgacgtga tttctcagtg cttccgcacg cacttcaacg gatcctgcaa acgggagatt
      781 tggcgcagtg acactgaatc cgtttgctcc gagatgactt cgaatacctt tgaaatacgc
      841 aagctggtcg ccctggtccg ggatattaaa cttctcccga aatatcactt tgagaatgtc
      901 aaacctcgcg attccatgta ctaacacgat cggaaatgat gccatgatta ccctactcct
      961 ttttcctgcc tatcaaggtc caaacaacct gcgcgtaaac tcattcgcaa actttcgttg
     1021 cggatcctgc tgatcgcgaa tctccaggaa ctttgtgaaa tacgtcgagt gaagtttctc
     1081 catgtccgca cgcgtatgta actcgcaaaa ctttccgagg tgcgggcgcg cgccgacttc
     1141 cttcatcgtc cgttcagcgg ccgcgtagta accttcaaat ccgttcgagt cgttgagcac
     1201 cagatcgatc cacgtcgacc tttgcccgcg gccggctccg atgagtgttc ggtcatgacc
     1261 cgccggtgtg aatcgtactt cgaacaacgg atacgggatc ggcttttcga gatacatgta
     1321 ctcgaaaagt ccgacaaact tcttgctcat ctcccatgtc ttttcataag gcacagtgaa
     1381 ttccaattcc tgatgcaggt gatagatcgt tcgattgaac gccttgttac tctccaacac
     1441 caggttcgtg ccgagtttga gtccgtgcgt agcatgcgag aattttttga gcgtgccggt
     1501 gtaggccatc aggcctccaa accacgccgc cagcaacgcg tcgaacgaaa tggcgatgaa
     1561 ctctcgcaac ggtcccagaa acgacttcgg tttctcggtt cggttccagg tgctgatctg
     1621 acacctcgtc gtgaacggaa acagatagaa gctgacgtga tcgttattgt tgattatttc
     1681 ctcgaggtga ctctcgacgt aagagagatc ggagatttca aacttctgcg cgacgtgaaa
     1741 gtgatcgacg gcctgaaccg tgacctccga gatcacaccc actgcgccaa caccgccgat
     1801 agcggcgcga aacagatcgt ccgtcggtcc gacagtcttc acctgaccgt tactatctat
     1861 gattctcagg tccacaaccg tttcgctgac gaatccccac tttcgcccgg taccgtgaac
     1921 gtcagttgag agaatgcccg cgatgctctg cgcgtcgtga gagggaagcg ccgcgaaggc
     1981 ccaaccgcgc tttagtaact cagccacgac atcgcgcacg cgcgtgccgc ctttaaccgt
     2041 gagacgttta ttgacacggt cctcgcgtac gacgccggcg taacgatcga gcgagacgag
     2101 cgtggtatcg gctactacgc cgtcgttgaa tgagtgggcg gacccgaaga agcgcagatc
     2161 cttagcctgt ttgatcagat agatgagctc ttcttctgaa gtcggctgtt cgaaatgccg
     2221 gggtttatag cgaaagcgcc ggccccagtt tcgaaaaaga ccattcaaga cccggccttc
     2281 gagccacagg aatttgccga acgtgagggc gttcagcatg atgtttagcg tcgtgtgaa
//
LOCUS       DASWTX010000833         2094 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_384656, whole genome shotgun sequence.
ACCESSION   DASWTX010000833 DASWTX010000000
VERSION     DASWTX010000833.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2094
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384656"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..706)
                     /locus_tag="VGD38_12600"
     CDS             complement(<1..706)
                     /locus_tag="VGD38_12600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HEY0728906.1"
                     /translation="MSKIIGIDLGTTNSVVAVMEGGEPTVITNSEGGRTTPSVVAFTK
                     DGSRLVGQVAKRQAVTNPENTVYSIKRFMGRRYNEVTEEIKQVPYKVSGAGSGGDVRI
                     SAGGKEWSPPEISAIILQKMKQSAEDYLGQKVDKAVITVPAYFNDAQRQATKDAGKIA
                     GLEVMRIVNEPTAAALAYGLDKKKDETIAVFDFGGGTFDVSVLEVGEGVVEVKSTNGD
                     THLGGDDIDERLIEWII"
     gene            complement(844..1419)
                     /locus_tag="VGD38_12605"
     CDS             complement(844..1419)
                     /locus_tag="VGD38_12605"
                     /inference="COORDINATES: protein motif:HMM:NF013250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HEY0728907.1"
                     /translation="MLTVFRMVLIPVFVSLLFYQRFILALTIFILAGVTDGLDGLLAR
                     RFDQKSQLGTILDPIADKLMLVTAFVVLSMRSVFPQPLPSHLPVPFWVTVAVISRDVF
                     ILVGAAAINVVTGFRGFRPSMLGKINTTVQIVAIGVIMFAASVPYGTGWYLPTIYATV
                     FGFAVLSGAHYVFFVSKLVNEDRRSEGNTLN"
     gene            complement(1461..>2094)
                     /locus_tag="VGD38_12610"
     CDS             complement(1461..>2094)
                     /locus_tag="VGD38_12610"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY0728908.1"
                     /translation="PFSNPEQIERAVETANRLQPDIVALTGDYISKERHYAAPCAEML
                     GKLKARYGVYAVLGNHDHWVDASLITDLFRAEGINVLINEGMRFEKDGAAFWLAGVDD
                     SMVGLEDISLALAGARKDEMKLLLAHNPIVLRRAARASVDLVLSGHTHGGQVAIRGER
                     ASARPNKRLLKGLWRQGNTQIYVNRGLGTVVLPIRYGCPPEISLLELRSN"
BASE COUNT          455 a          591 c          602 g          446 t
ORIGIN      
        1 cgatgatcca ttcgatcagg cgctcgtcga tgtcgtcacc gccgaggtgc gtgtcgccgt
       61 tcgtggactt cacttccaca acgccttcgc cgacttcgag gaccgacacg tcgaacgtac
      121 cgccgccgaa gtcaaaaacc gcgatcgtct cgtccttctt cttgtcgaga ccgtaagcca
      181 gcgccgcggc cgtcggctcg ttgacgattc gcatcacttc gagaccggcg atctttccgg
      241 cgtccttcgt ggcctggcgt tgcgcgtcgt tgaaataagc cggcaccgtg atcacggcct
      301 tgtcgacttt ctgaccgaga tagtcttcag ccgactgctt catcttctgc aggatgatgg
      361 ccgagatctc cggcgggctc cattccttgc cgcccgcgga aatgcgcacg tcgccgccgc
      421 ttcccgcgcc tgaaactttg tatgggacct gtttgatttc ttcggtaact tcgttatacc
      481 ggcgtcccat gaaccgctta atcgagtaaa cggtattctc cggattcgtt accgcctgac
      541 gcttggcaac ctgaccaaca aggcggctgc catcttttgt gaaggccacg accgacggcg
      601 tggtgcggcc accttcggag ttggtaatga cggtgggctc gccgccctcc atcaccgcaa
      661 ccaccgagtt ggtagttcca aggtcaattc caataatctt gctcatcttc ttttagtctc
      721 caaacccttt agctttactt cgaggcgccg gaggaggcct ttcgaaagga atcgaccact
      781 cacgctactg cactcgagtt gaacgcccgg tcaatataat acttgagtgt gtcgttgtca
      841 actttaattg agtgtgtttc cttcggagcg gcggtcttcg ttgacgagtt tggaaacgaa
      901 aaagacgtag tgggcgccgg aaaggacggc aaaaccgaaa acggtcgcgt aaatcgtcgg
      961 caggtaccag ccagtgccgt acggcacact ggcggcgaac atgatcacgc cgatcgcgac
     1021 gatctgaacg gtcgtgttga tcttgccgag catcgacggc cggaagccgc gaaaaccggt
     1081 gacgacgttg atggctgcgg cgccgacgag aatgaaaacg tcgcggctaa tcacagccac
     1141 agtcacccag aacggcactg gcaaatgcga aggcaaaggc tgtggaaaga ccgagcgcat
     1201 cgacaagacc acaaaagccg tgaccagcat cagcttgtcg gcaatcggat cgaggatcgt
     1261 gccgagttgt gatttctggt cgaaacgccg tgccagcagg ccgtcgagac catcagtaac
     1321 gcccgcgaga atgaagatcg tgagggctaa aatgaacctt tggtaaaaga gaagcgatac
     1381 gaagacaggg atcaagacca tccgaaacac agtcagcaag ttcggaacgg taataatccg
     1441 agatgacacg gtaggagcag ttaattactg cgcaattcca gcaatgagat ttcgggaggg
     1501 caaccgtacc tgatgggtaa cacgacggtt cccaagcccc ggttgacgta aatttgtgtg
     1561 tttccctggc gccagaggcc tttcagcaaa cgcttgttgg gtctggccga cgcgcgttcg
     1621 ccgcgaattg cgacctggcc gccgtgtgtg tgaccgctca gaactaaatc cactgaagcc
     1681 cgagccgcgc ggcgaagaac gattggattg tgcgccagca gcagcttcat ttcatctttg
     1741 cgggcgccgg ctaaagctaa tgaaatgtct tcaagtccga ccatcgagtc gtccacgccg
     1801 gcaagccaga aggccgcgcc gtctttttcg aagcgcatgc cctcgttgat caggacgttg
     1861 attccttcgg cgcggaacag gtcggtaatc agggacgcgt ccacccagtg atcgtgattg
     1921 ccgagtacgg cgtaaacgcc gtaacgggct ttcaatttgc cgagcatctc ggcgcagggc
     1981 gcggcgtagt gacgctcttt cgagatgtag tcgccggtta gcgcaacgat gtccggttgg
     2041 agccggttgg ctgtctcgac ggcgcgttcg atctgttcgg ggttagaaaa cggg
//
LOCUS       DASWTX010000834         1643 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_270527, whole genome shotgun sequence.
ACCESSION   DASWTX010000834 DASWTX010000000
VERSION     DASWTX010000834.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1643
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270527"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1643)
                     /locus_tag="VGD38_12615"
     CDS             complement(<1..>1643)
                     /locus_tag="VGD38_12615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008063311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HEY0728909.1"
                     /translation="PRTVVAEEENAELSDMRRRFWVSAALSLPLIVLAMSEFIPGDPA
                     RILIGARSITWISLALASPVVLWGGWPFFARFWYSLVNRSLNMFTLIGLGVGVAYLFS
                     VVATLFPEIFPHSFRDQIGNVPVYYEAAAVITTLVLLGQVLELKARSSTSAAIKSLLG
                     LAPKTARRIAQDGSEVDVPLDQVMKGDHLRVRPGEKIPVDGIVVEGTSSVDEAMVTGE
                     PIPVEKKKGDRVIGATVNGTGSLVMQAERVGAETLLSQIVQMVAEAQRSRAPIQKLAD
                     VVSSYFVPAVILIAIITFVVWATVGPEPRMAYAIINAVAVLIIACPCALGLATPMSIM
                     VATGKGAQAGVLFKNAEAIEVLREIDMLVVDKTGTLTEGKPKLVTVVTLEGSEKELLR
                     LAASLERGSEHPLAASIVSGAEERDVDLVKAEAFESITGKGVKGTVDGHSVALGNRAL
                     VEEAGIDAGELATRAETYRAEGQTVMFVIVDGKPAGLLGVADPIKESTPEAISQLHQQ
                     AIKIVMLTGDSRTTAEAVARRLNIDEVVAEVLPNQKAETV"
BASE COUNT          377 a          508 c          397 g          361 t
ORIGIN      
        1 acggtttcgg ccttttggtt gggcagtact tcggccacaa cttcatcgat gttgagtctt
       61 cgcgccacag cttccgctgt agttcggctg tcgccagtga gcatcacaat tttgatcgcc
      121 tgctggtgca gttgactgat agcctcgggt gtactctcct taataggatc agctactccc
      181 aacaagccag caggtttccc gtcaacaatc acaaacatca ctgtttgtcc ttcggcacgg
      241 tacgtttcag ctctcgtggc gagttcgcca gcatcgattc cagcttcttc gaccaaagca
      301 cgattgccga gcgcgacaga gtggccatca acagttccct taacaccttt tccggtaatc
      361 gattcaaacg cctcggcttt caccaaatcc acgtcacgct cctctgcgcc ggaaacgatt
      421 gaggccgcca gtggatgttc actacctcgc tcgagacttg ccgctaagcg aagtagttcc
      481 ttttcgctgc cttcgagagt tactactgtc accagtttcg gtttcccctc cgtcaacgtg
      541 ccggtcttat caacaacgag catatcgatc tcgcgaagca cttcgatcgc ttcagcgttc
      601 ttaaacaaaa ctcctgcctg cgcacctttg cctgtagcaa ccatgattga catcggtgtg
      661 gccaaaccca acgcacaagg acacgcaatg atcagaacgg caaccgcatt gatgatcgcg
      721 taagccatgc gcggttctgg accaacggtc gcccatacca caaacgtaat gatcgcgatc
      781 agtattaccg ccggaacaaa gtaactcgag acgacgtcgg caagcttttg aataggcgcg
      841 cgactgcgct gcgcctccgc aaccatctgt acgatctgcg acaacaatgt ttccgcgcca
      901 actcgctcag cctgcataac aagggagccc gtgccattga cggtggcacc gataacccga
      961 tcacccttct tcttctcaac aggaattggc tccccagtca ccatagcctc atcgactgag
     1021 ctggttccct caacgacgat gccatccacg gggatcttct cgcctggtcg cacacgcaag
     1081 tgatcacctt tcataacttg atcgagcggc acgtctactt cactcccgtc ctgcgcaatc
     1141 cggcgcgccg tcttcggggc cagacccagc agcgacttga ttgcagcgct tgttgaactg
     1201 cgcgctttca gttcgagaac ctggcccagg agcaccagtg ttgtgataac cgcagccgct
     1261 tcgtaataga ccggcacgtt accgatctga tctcgaaatg agtgtggaaa gatttccggg
     1321 aagagtgtgg cgacgacgct gaacagataa gcgacaccca cgcccaggcc gatcaacgta
     1381 aacatgttga gactgcggtt tacgagcgag taccaaaagc gcgcgaagaa cggccatcct
     1441 ccccaaagca cgactggtga tgcgagcgct aacgagatcc aagtaatcga tctggctccg
     1501 atgaggatac gggccggatc tccaggaatg aactcgctca ttgcaagtac gatcaggggc
     1561 aggctcaaag ccgcactcac ccagaaccgc cgccgcatgt cgcttagctc agcgttttct
     1621 tcctctgcaa cgacagtacg cgg
//
LOCUS       DASWTX010000835         1904 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_9833, whole genome shotgun sequence.
ACCESSION   DASWTX010000835 DASWTX010000000
VERSION     DASWTX010000835.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1904)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1904)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1904
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9833"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(25..777)
                     /locus_tag="VGD38_12620"
     CDS             complement(25..777)
                     /locus_tag="VGD38_12620"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY0728910.1"
                     /translation="MGLIGGTVGYHLLRRISVDGETGYCDGSAYEGVSKIETLLSKRI
                     WDETKDKVVIDFGCGDGEDAVEVAKRGARKVVGIDIREHALDRARKRAAEQGVSGHCT
                     FGTRTDEKADVILSIDAFEHFDDPAEILRIMRRLLKDDGCVLAAFGPTWYHPLGGHLF
                     SPFPFAHLIFTEKSLIRWRSDFKTDGATRFCEAEGGLNQMTIRRFESIVAESDFKFAD
                     FEPVPIRKLKPIANRLTREFTTAIVRCKLVPR"
     gene            complement(784..>1904)
                     /locus_tag="VGD38_12625"
     CDS             complement(784..>1904)
                     /locus_tag="VGD38_12625"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HEY0728911.1"
                     /translation="TLVDEPIKTFSVAFAEREANELEYARLVAQAYKTDHHEIVVTPE
                     QFWAKLPDLIWHEDEPLAHPSSVALYFVSHLASQHVKVVLTGEGSDELMAGYARYRKT
                     ILNLALGEHYHRVVPSGVRDLVRKQFSGMTGSKLRLKLGRTFLNLTPDIESIYFDNFS
                     VFSRSLQQQLLTSDAMDQTGGIDPYAGVRDVLRNTDAQSLLDRLLYADIKTYLHELLM
                     KQDQMSMAASVESRVPFLDHKLVEFTSSLPERLKLRRWTTKYVLRQSMKGVLPPAILD
                     RPKMGFPVPLGKWFRGAYAPVLDEYVLSSRAIERGIFNAEFVRSLVDQHRGGVANHSE
                     RLWSLVNLEMWFRRFIDGENAGANLETADESMLATARS"
BASE COUNT          385 a          594 c          531 g          394 t
ORIGIN      
        1 ccagagaatg cgcacaggat tcggttatcg cggcacgagc ttgcaacgca cgatcgcggt
       61 cgtgaactcc ctcgtcagcc ggttggcaat cggttttagt tttcgtatcg gcaccggctc
      121 gaagtcagca aacttaaaat cactttccgc gacgatcgac tcaaaacgtc gaatcgtcat
      181 ttgattcaaa ccgccttcgg cttcgcaaaa acgcgtcgcg ccatccgttt tgaaatccga
      241 gcgccagcgg atcagagact tctccgtaaa gatcaggtgc gcaaacggaa acggcgaaaa
      301 cagatggccg cccagcgggt gataccacgt tggcccaaac gccgcgagca cgcagccgtc
      361 gtccttcaac agccggcgca tgatgcgcag gatctcagcc gggtcgtcga aatgttcgaa
      421 agcgtcgatc gacaagatca cgtcggcttt ctcgtcggtc ctggtgccga acgtgcaatg
      481 accgctcacg ccttgttccg cggcgcgctt tcgcgcgcgg tccagcgcgt gttcccgaat
      541 gtcgatgccc acgactttcc gcgcgccgcg ctttgcgacc tccaccgcgt cttcgccgtc
      601 gccgcagccg aaatcgatga cgaccttgtc tttcgtctcg tcccagatgc gtttgctgag
      661 cagcgtttcg atcttgctga caccttcgta agcgctgccg tcgcaatacc ctgtctcgcc
      721 gtcaacgctg atccggcgca gcaggtgata tccgactgtt cctccaatca gccccatgtt
      781 cgttcagctt cgtgctgtcg ccagcatgct ttcgtccgcg gtttcaaggt tagcgccggc
      841 gttctcgccg tcgatgaaac ggcgaaacca catttccagg ttgaccagcg accacaaacg
      901 ttccgagtga ttcgcgacgc caccccgatg ctggtctacg agcgaccgta caaattcggc
      961 gttgaagatc ccgcgttcga tcgcgcggct gctgagaacg tattcgtcca acaccggcgc
     1021 gtacgcaccg cggaaccatt taccgagcgg caccggaaag cccatcttcg gacgatcgag
     1081 aatcgccggc ggcaacacgc ctttcatgct ctgccgcaac acgtatttgg tggtccagcg
     1141 acgcagcttc agccgctccg gcaggctcga ggtaaactcc accagcttgt gatcgagaaa
     1201 aggaacacgg ctttcaaccg aagcagccat gctcatctgg tcctgcttca tcaaaagctc
     1261 gtgcagatac gttttgatgt ccgcgtagag caggcgatcg agtaacgatt gcgcgtcggt
     1321 gtttcgcaac acgtcgcgca cgccggcgta gggatcgatg ccgcccgtct ggtccatcgc
     1381 gtcgctcgtg agcagttgct gctgcaacga acgcgagaag accgagaagt tatcgaagta
     1441 aatgctctcg atgtccggcg tgagattcag gaacgtgcgg ccgagcttca gacgcagttt
     1501 cgatcccgtc atgccggaaa actgtttgcg cacgaggtcg cgcacgccac tcggcacgac
     1561 gcgatgatag tgctcgccga gcgcgaggtt cagaatcgtc ttgcgataac gtgcgtaacc
     1621 ggccatcagt tcgtcgctgc cctcgcccgt caaaacgact ttcacgtgct gcgaagcgag
     1681 atgcgaaacg aaatacagcg ctacactcga cgggtgcgcg agcggctcgt cttcgtgcca
     1741 gatcagatcc ggcagcttgg cccaaaactg ttccggcgtg accacgattt cgtgatggtc
     1801 cgttttgtaa gcctgcgcca cgaggcgcgc gtattcgagc tcgttggctt cgcgttcggc
     1861 aaacgccacc gagaaagtct tgatcggctc gtcgacgagc gtgc
//
LOCUS       DASWTX010000836         1662 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_227834, whole genome shotgun sequence.
ACCESSION   DASWTX010000836 DASWTX010000000
VERSION     DASWTX010000836.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227834"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            84..908
                     /locus_tag="VGD38_12630"
     CDS             84..908
                     /locus_tag="VGD38_12630"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY0728912.1"
                     /translation="MKLTVLGSGSTGNAALIVAGNTRVLVDAGLSAKEIVRRLALVGE
                     DAQQLDGVLVTHEHGDHAGGLRVLLGSVNCPVYISAKTHDAYVSERFNVNNDEPRRRD
                     RALKGRVEEIESSKDFRIGEIDFHPFTIPHDAVDNFGFTATHHGVKIATVMDFGAITT
                     LVSEQLRGCAAIVIESNHSRDMLKACDSYPWELKQRILSRLGHLSNEDLADWIKDGFD
                     GCAKYMVLAHLSQRANNPYLAKITAEVALQEKTPLFPCSTEVFLSYPKEPTPWIEV"
     gene            932..1327
                     /locus_tag="VGD38_12635"
     CDS             932..1327
                     /locus_tag="VGD38_12635"
                     /inference="COORDINATES: protein motif:HMM:NF024609.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4019 domain-containing protein"
                     /protein_id="HEY0728913.1"
                     /translation="MFLSGCGQQADRGRVPVEVQDVINTVGDQIAQERYEQIYNESSD
                     LWKQDATLEQSTQVFKTLREKLGQVEYRSLHSATEQQNSGGALKGHAYILSYQTRFER
                     GEGMETFTLIEQNGRWLLARYFVNSTALQ"
     gene            1330..>1662
                     /locus_tag="VGD38_12640"
     CDS             1330..>1662
                     /locus_tag="VGD38_12640"
                     /inference="COORDINATES: protein motif:HMM:NF012432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HEY0728914.1"
                     /translation="MIDRYTLPEMGALWSEQNKFQKWLDVEIAVCEVHADNGTIPRDA
                     LEQIKARAKFSVERINEIEKTTNHDVIAFTTNLAESIGEASRFVHYGLTSSDVVDTAH
                     ALRLRDAAN"
BASE COUNT          396 a          480 c          447 g          339 t
ORIGIN      
        1 gtacaaaaag cacaaaagag ataaaagctc tgctatagtg ctcttctctt ctgacttgtg
       61 ctttttgcgc ctctttgtgg cttatgaaac ttaccgttct cggcagcgga tcaactggta
      121 acgcagcttt gatcgttgca ggtaatacac gcgtgctcgt cgatgcaggc ttgagcgcga
      181 aagagatcgt tcgccggctt gctctcgtcg gcgaagacgc gcaacagctc gacggagtgc
      241 tcgtcacgca cgaacacggc gatcacgccg gcggtctccg cgttctactc ggctcggtta
      301 attgtcccgt ctacatctcg gcgaaaacac acgacgctta cgtcagcgaa cgtttcaacg
      361 tcaacaacga cgaaccacgc cgccgcgatc gagcactgaa aggccgcgtc gaagagatcg
      421 aatcgagcaa ggacttccgc atcggcgaga tcgattttca cccgttcacg atcccacacg
      481 acgccgtcga caacttcggt tttaccgcca cgcaccacgg cgtgaagatc gcgaccgtga
      541 tggacttcgg tgcgatcact acgctcgtct cggaacaact ccgcggctgc gccgccatcg
      601 tcatagagtc gaaccacagc cgcgacatgc tcaaggcctg cgactcgtat ccgtgggaac
      661 tcaaacaacg catcctgtcg cgcctgggcc acctctcgaa cgaagacctc gccgactgga
      721 tcaaagacgg attcgacggc tgcgcgaagt acatggtgct ggcccatctc tcgcaacgcg
      781 cgaacaatcc gtatctcgcg aagattaccg ccgaagtcgc gttgcaggag aaaacaccgc
      841 tgtttccgtg ctcgacggaa gtcttcttgt cctatccaaa ggagcccacg ccctggatcg
      901 aagtgtagga atagcggcgc ttttgttttt ggtgtttctg tcgggctgcg gccaacaagc
      961 cgatcgcggg cgagttcctg ttgaagttca ggacgtaatc aacaccgtcg gcgaccagat
     1021 cgcgcaggaa cgttacgaac agatctataa cgagtcgtcc gacctgtgga aacaagacgc
     1081 cacgctcgaa caatcaaccc aggttttcaa aactctgcgc gagaaactcg gccaagttga
     1141 gtatcgcagt ctccactcag caacggaaca gcagaactcc ggtggcgctt tgaagggtca
     1201 tgcgtacata ctctcctatc aaacacgatt cgaacgcggc gaaggaatgg agacgtttac
     1261 gttgatcgaa cagaatggac gctggttgct ggcgcgctat tttgtgaact caacggcact
     1321 tcaatagaga tgatcgatcg ttacacgttg cccgagatgg gcgcgctctg gtcagagcaa
     1381 aacaagtttc agaagtggtt ggatgtggag atcgcggtgt gcgaagtgca cgccgacaac
     1441 ggaacgattc cgcgcgatgc tttggaacag atcaaagcgc gcgcgaagtt ttccgtggaa
     1501 cgcatcaatg aaatcgaaaa gaccaccaat cacgacgtta tcgctttcac gacaaacctc
     1561 gccgagtcga tcggcgaagc gagccgtttc gttcattacg ggctcacgtc gtctgacgtt
     1621 gtcgacaccg cccacgcact gcggttgcgc gacgccgcga ac
//
LOCUS       DASWTX010000837         3320 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_363365, whole genome shotgun sequence.
ACCESSION   DASWTX010000837 DASWTX010000000
VERSION     DASWTX010000837.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3320
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363365"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3222)
                     /locus_tag="VGD38_12645"
     CDS             complement(<1..3222)
                     /locus_tag="VGD38_12645"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEY0728915.1"
                     /translation="MHELFAQQVEHHSDRVAVVCGNEALSYSALNARAERLAVRLRQM
                     GIGPESRVGLLLERSVEVVVGILGVLKAGGAYVPLEVGYPDERLRYVVEDAGLALVVT
                     YESEAERVRSLGAEPVLLEENTDEREVGEARISVHGLSRENLCYVIYTSGSTGRPKGV
                     MVTHGQLLNYVRVVQARLGLSEGLSYGLLTTFAADLGHTVTFPALCTGGCLHVVATEV
                     ALEAKRLSAYLKEHEIECLKMVPSQLSALVRSGERVLPQSRLVLGGEALTEGLVEQVI
                     ALAQGTELVLYNHYGPTETTVGAVAGRVWQAGENRAEMKAGTAAVALGRALGNTSVYV
                     VDRSGEVVPQGVAGEVYIGGEGVARGYLERPELTAERFIPDEFSSEAGARLYRTGDLA
                     RYRADGDLEFLGRIDNQVKIRGYRIELGEIEAALCAMAGVREAVVVTRPDAQGEQRLV
                     AYVVGEASGLDQGTLRRELGARLPDYMVPSAIVELDQLPLTANGKVNRRALPEPEHTR
                     QGSEYAAARTPVEELLCGIWAEVLGVERVGVDDNFFELGGHSLLATQVISRINSAFAV
                     EIPVGSLFDARTVHELAQRVESEMRAGKGVTAPPIVAVNRDRELPLSFAQQRLWFLDQ
                     LEPGTSLYNIFKAVRLDGVLDMKALEAALNEIINRHEALRTTFDAIDGRPRQSIAAAK
                     PVALKIEDLNGVTDDERETEVLRLAHEESVRPFDLTQGPLLRVRLLRLNDEEHVMLFT
                     MHHIIGDAWSIALLVRELATLYRAFHLGTPPSLPQLPVQYADYAVWQREWLQSAALDK
                     HVSFWKEQLANAPPVLELPTVHRRPEVTSLEGARHAAVISEESARALEAFSRSKGVTL
                     FMTLLAAFKILLHYQTKCDDIVIGTDVANRNHLETESVCGFFINHLVLRTNLSGDPVF
                     NDVLKSVRKTVWDAYAHQELPFDRLVEVLNPKRSLKYSPLFQVKFIFQNTERVGDDEE
                     TELAGLRLSGLPVEGNTSKFDLTLNANRRPDALVYWIEYKTSLFNASTIARFAEQFEF
                     ILSHVVSRPESRLSEIEEALADADRQRRARQEQNLKESRLNKFR"
BASE COUNT          636 a         1168 c          847 g          669 t
ORIGIN      
        1 tctgaactta ttgagacgtg attctttgag attctgctcc tgacgcgcgc ggcgctgccg
       61 gtcggcgtct gcgagcgctt cttcgatttc gctcaacctg ctttcggggc gcgaaacgac
      121 gtggctcaga ataaattcaa actgctcggc aaagcgcgcg atcgtcgaag cgttgaagag
      181 ggacgttttg tattcgatcc agtaaacgag tgcgtcgggc cggcgattcg cgttgagcgt
      241 caagtcgaac ttcgaggtgt tgccttcaac tggcagtccg ctcagtctca atccggccag
      301 ctccgtctct tcatcgtctc caacgcgctc ggtgttttga aagatgaact tcacctggaa
      361 caacggcgaa tatttcagac tgcgtttcgg gttcaacacc tcgaccagcc tgtcgaacgg
      421 cagttcctga tgcgcgtaag catcccacac cgttttccgc acgctcttca acacgtcatt
      481 gaaaaccgga tcgcccgaga gattcgtgcg caacacgagg tggttgatga agaaaccgca
      541 aacgctctcg gtttcgaggt gattacggtt cgcgacgtca gtgccgatca cgatgtcgtc
      601 acacttcgtc tggtagtgca ggaggatttt gaacgcggcg agcagcgtca tgaaaagcgt
      661 gacgccttta gaacggctga aggcctcgag cgcccgggct gactcttcac taatcaccgc
      721 cgcgtgtcgc gcgccttcca gagacgtaac ctccggccgc cggtgaactg tcggcaactc
      781 cagcaccgga ggcgcattcg cgagttgctc tttccaaaac gaaacgtgct tatccaatgc
      841 cgcgctctgc aaccactcgc gttgccacac tgcgtaatcc gcgtactgca cgggcaactg
      901 cggcagcgac ggcggcgtgc cgaggtgaaa ggcgcgatag agcgtcgcca actctcggac
      961 cagcaacgct atggaccacg cgtcgccgat gatgtgatgc atcgtgaaga gcatgacgtg
     1021 ctcttcgtcg ttcaaacgca acaacctgac gcgcagcagc ggcccttgcg tgagatcgaa
     1081 cgggcgtaca ctctcctcat gcgcaagccg cagcacttcg gtttctcgct cgtcgtcagt
     1141 cacgccattc aagtcttcga tcttcagcgc caccggctta gccgcggcaa ttgactgacg
     1201 tgggcgtccg tcgatggcgt cgaatgttgt gcgtagcgct tcatgacggt tgatgatttc
     1261 gttcagggca gcttccaagg ctttcatgtc gagtacgccg tcgagacgta cggccttgaa
     1321 gatgttgtag agcgatgttc cgggttcgag ttgatcgagg aaccacagcc gctgctgcgc
     1381 gaacgaaagc ggtaactctc tgtccctgtt tacagccacg atcggcggcg cagtgacgcc
     1441 ctttccggcg cgcatttcgc tctcgactcg ttgcgccagt tcatgcaccg tacgggcgtc
     1501 gaagagactg cccacaggta tctctaccgc aaacgctgaa ttgatccgcg agatgacctg
     1561 cgtggcgagc agcgaatgac cgccgagttc gaagaagttg tcgtcaacgc cgactcgctc
     1621 gacgccgagc acctccgccc agatgccgca cagcaattct tccaccggcg tccgcgccgc
     1681 agcgtactca cttccctgtc ttgtgtgctc cggttccggc aatgcgcgcc ggtttacttt
     1741 cccgttcgcc gtcaatggca actggtccag ttccacgatc gctgacggca ccatgtagtc
     1801 cggcaaccgc gctcctaatt cacgccgcag cgtgccctgg tccaatcccg acgcttcgcc
     1861 aaccacatag gccactaacc gttgctcgcc ctgcgcgtcc ggccgtgtca ctaccactgc
     1921 ctcacgtact ccagccatcg cacacaacgc tgcttcgatc tcgcccaact caatccggta
     1981 gccgcggatc ttcacctgat tgtcgatccg cccgaggaac tccaagtctc catccgcgcg
     2041 gtagcgcgcc aggtcgcccg tccggtacag ccgcgctccg gcctcgctgc tgaactcgtc
     2101 aggaatgaac cgttccgccg tcaactccgg ccgctccaga taccctcgcg ccactccctc
     2161 accgccaatg taaacctctc cggctactcc ctgcggcact acctcgccgc tcctatccac
     2221 cacgtaaacg ctcgtgttcc ccaacgctct tcctaacgct acggcagcgg ttccggcctt
     2281 catctccgcc cggttttcgc ccgcctgcca cactcgcccg gctactgcgc caaccgtcgt
     2341 ctccgtcggt ccgtagtggt tgtaaagcac caactccgtt ccctgcgcca gcgcgatcac
     2401 ttgctctacc aacccttccg tcaacgcctc cccgcccaac accagacggc tctgcggcaa
     2461 cactcgctca ccactccgca ccaaggctga caactggctc ggcaccatct tcaaacactc
     2521 gatctcgtgt tccttcaggt aagcactcag ccgctttgcc tccagtgcca cctccgtcgc
     2581 caccacatgc aaacagccac cagtacacaa ggcaggaaac gtaaccgtgt gccccaggtc
     2641 tgccgcaaac gtcgtcagca acccgtagct cagtccctca ctcagcccca aacgcgcttg
     2701 gaccacccgc acataattga gcaactgccc atgcgtaacc atcacccctt tgggccgccc
     2761 cgttgaccct gacgtgtaga tcacgtaaca gaggttctcc ctgctcaagc catggacgct
     2821 aatgcgagct tcgccgactt cgcgttcatc cgtgttctct tcaagcagca ccggctcggc
     2881 tcccaagctt cgcactcgct ccgcttcact ctcgtaggtt acgaccagcg ccagtccagc
     2941 atcctcgact acgtagcgca accgctcgtc cgggtagccc acttccaacg gcacgtaagc
     3001 gccgcccgct ttgagcaccc ccagaatccc gaccaccacc tcgaccgaac gttcgagcaa
     3061 caaccccaca cggctctcgg gtccgatgcc catctgccgc aaccgcacgg ctagccgctc
     3121 agcgcgcgcg ttcagcgccg agtagctcaa cgcttcgttc ccgcagacca ccgctacccg
     3181 atcggagtgg tgctccacct gctgcgcgaa caactcgtgc actcccacgc tcccgtccac
     3241 ggctaaggga gcgcgggcgg ctcgcccgca agcagcatcg gttgcgcttg tcaaagactg
     3301 cgagcgagcc gcccgcgctc
//
LOCUS       DASWTX010000838         4872 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_248702, whole genome shotgun sequence.
ACCESSION   DASWTX010000838 DASWTX010000000
VERSION     DASWTX010000838.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4872
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248702"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..994
                     /locus_tag="VGD38_12650"
     CDS             <1..994
                     /locus_tag="VGD38_12650"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEY0728916.1"
                     /translation="MFIVGMELNVRHVREKGSAAVMISHASIIVPFVLGAWLALFLYR
                     GLAPAGTSFSAFALFIGVAMSITAFPVLARILEDRNLTQTDLGSIALTCAAVDDVTAW
                     CILALVIALVQASGIAVSLVTVVFTLLFAAAMIFVVRPQLRRLVNQATGSHVHTRRLI
                     AAVLAFVLVCALITETIGIHALFGAFIAGAVMPPSADFRTFLRDKLDAFSAAALLPLF
                     FVFTGLRTQVTLLNDWESWALCGVIILVAIAGKLGGSMLMSRFTGMSWPQSFSIGALM
                     NTRGLVELVVLNIGYDLGILSGRIFAMMVLMALVTTFMTGPLLSLVNIRAKGTT"
     gene            1007..1510
                     /locus_tag="VGD38_12655"
     CDS             1007..1510
                     /locus_tag="VGD38_12655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728917.1"
                     /translation="MTKKLLIAFAAMMFVSIIALAAVKPDFSGTWTLDRARSYGMPPD
                     MTQVLTISHKDNTVEVETKIIQPNNERTIKDTFVLDGQEHEFQPPTPPGGQAPPKGKR
                     TASWLPGEIGITVTDVTTAQTPKGAVTTQNMRKWTINGNGELTVDSYVDNPNVSYEAK
                     RIFTKQK"
     gene            complement(1520..2533)
                     /locus_tag="VGD38_12660"
     CDS             complement(1520..2533)
                     /locus_tag="VGD38_12660"
                     /inference="COORDINATES: protein motif:HMM:NF020039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HEY0728918.1"
                     /translation="MNSHADKKILNDHFVVYSEEFYDVIGKDPQFYTVIETNAHEGPV
                     YVKEENALYFTTVPESSNIPLQGWKQVAIKRVALDGDQFPLDPDAATIFSADTNMANG
                     MTLDPDGRLVICEQGTKSTPARISRMDLKTRKVETIVDEWRGLRFNSPNDVVVKSDGT
                     VWFTDPSYGALQGFKDAPLVGDFVYCYDPANDQLSVVADSFNKPNGLAFSPDESILYI
                     NDSGAIQGPGTYYVNLPHHIRAFDVVNKRHLVNDRLFCVVTPGIPDGLKLDTEGRVYS
                     SSASGLQVYNKSGDLIGEIIAPGVANFTFGGKDNNTVYMMADTVIWAAEITATGATRP
                     QDY"
     gene            2610..2834
                     /locus_tag="VGD38_12665"
     CDS             2610..2834
                     /locus_tag="VGD38_12665"
                     /inference="COORDINATES: protein motif:HMM:NF044561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HEY0728919.1"
                     /translation="MKLRLTKVFQKVPEGYIGFVKELPGANTQGETLEETRANLEEAI
                     ELVLEANRVLAEERLRGQDVIRESIALSAA"
     gene            3287..>4872
                     /locus_tag="VGD38_12670"
     CDS             3287..>4872
                     /locus_tag="VGD38_12670"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0728920.1"
                     /translation="MKLTTLKKQIVILPLLLTGPCLAQPFNSRFVAAAQERSVTLRGR
                     VVDANTGEPIANVRVVATLADKATITDADGAFTLELPPGPQELYITTVTYGLVKKTIN
                     VGAGTNSNVEIALNEDAAALTEQVTIASDPFESTRTTSTFEQTLNKRELQATSSILLS
                     DPIRAAQTLPGVASNDDFRSEFSVRGAGFDRVGLWLDGVLTDNFVHTVAGGYPDTGSL
                     SVINSDAINSVSLMSGGSPANFGNRTAAVLDLDSRDGNRVKPSGRIAVALSGISGMTD
                     GPIAGGKGSYLVAGRKSYTDYLVRRVNDENQFTNNPPILNFADIQGKLLYDFSKRNQA
                     GVSAVFGGFDYDRNRDREQLFVNSVFRGESRNFLLNAHWSFTPNPQTFWQTRFFAQKT
                     NFQNVNRDELILNDGDRDQYGVRSDVSFQLPRSNRLETGLYVRSVSVNSFSQRFSFAN
                     VPFDFGSFDESGTEQSYYAQDTWTNERWRFQLTGGLRVEHSEITSQTLTSPRASLTWS
                     INNHWRVHAMAGRYYQFPDL"
BASE COUNT         1075 a         1350 c         1357 g         1090 t
ORIGIN      
        1 catgttcatc gtcggcatgg aactgaacgt gaggcacgta agagagaaag gctccgctgc
       61 ggtgatgatc agtcacgcga gcatcatcgt gccgttcgtg ctcggcgcct ggctcgctct
      121 gtttctttat cgggggctcg cgccggcggg aacctcgttc agcgcctttg cgttattcat
      181 cggggtcgca atgagcatca ccgcctttcc ggtgctcgca cgaattcttg aagatcgcaa
      241 cctgacacaa accgatctgg gttcgattgc gttgacctgt gcggcagtcg acgacgttac
      301 cgcgtggtgc atcctcgcat tggtgatcgc gctggtgcag gcgagcggca ttgcggtgtc
      361 gctggtgacg gtcgtcttca cgctgctgtt tgccgcggcg atgatctttg tagtgcggcc
      421 gcagttgcgg cgtttggtga atcaggcgac ggggtcgcac gttcacacac ggcgcttgat
      481 cgcggccgtc ctggcttttg ttttagtttg cgcgctgatt acggagacga tcggcattca
      541 tgcgctgttt ggcgctttta tcgcgggcgc ggtgatgccg ccgtcagcgg atttcagaac
      601 gtttctgcga gacaagctcg acgcgttcag tgccgctgcg ctgctgccgc tgttctttgt
      661 gttcacgggt ttacgcacgc aagtcacgct attgaacgac tgggaaagct gggcgctctg
      721 cggcgtgatc attctcgtgg cgattgccgg gaagctgggc ggcagcatgt tgatgagccg
      781 cttcacgggc atgagctggc cgcaatcgtt ttcgatcggc gcgctgatga acacgcgcgg
      841 attagtcgag ttggttgtac tgaatatcgg ttatgatttg ggtattcttt caggccgcat
      901 ctttgcgatg atggtgttga tggcgctggt cacgaccttc atgaccggac cgttgctctc
      961 gctggtcaac attcgagcaa aaggaaccac ttaaaggaga actgcaatga ctaagaaact
     1021 gttgattgcg tttgctgcaa tgatgttcgt gtcgataatc gcgctggccg ccgtcaaacc
     1081 cgacttcagc ggcacctgga cactggatcg cgcgcgcagc tacggcatgc ctccagacat
     1141 gacgcaggtg ctcacgatct ctcacaaaga caacacggtc gaagttgaaa cgaagatcat
     1201 ccagccgaac aacgaacgaa ccatcaagga cacgttcgtt ctcgatggcc aggaacacga
     1261 gtttcagcca ccgacgccgc ccggaggaca agcaccgccg aagggcaagc gaacggcgag
     1321 ctggttaccg ggtgaaatcg gcatcaccgt gaccgacgtc acgacggcgc agacgccgaa
     1381 gggcgctgtc acgactcaga acatgcgcaa gtggaccatc aacggtaacg gcgagctgac
     1441 ggtcgattcg tacgtcgaca atccgaacgt ctcgtacgaa gcgaaacgga tcttcacgaa
     1501 gcagaagtaa gcgccttcgt tagtaatctt gcgggcgcgt tgcgccagtg gcggtgatct
     1561 ccgcggccca aatcacagta tcagccatca tgtacacggt gttgttgtct ttaccgccga
     1621 aggtgaagtt tgcgacgcct ggtgcgatga tctcgccgat cagatcgccg ctcttgttgt
     1681 agacctgaag gccgctggct gatgagctgt acacgcggcc ttccgtgtcg agtttcaatc
     1741 cgtcgggaat gccgggcgtc acgacgcaaa acaagcggtc gttaacgagg tgtcgtttgt
     1801 ttaccacgtc gaaagcgcgg atgtggtgcg gaagattgac gtagtacgtg cccggtccct
     1861 gtatggcgcc gctgtcgttg atgtagagga ttgactcgtc gggtgaaaac gcgaggccgt
     1921 tgggtttgtt gaacgagtct gcgacgactg aaagctgatc gtttgccggg tcataacagt
     1981 acacaaaatc cccaaccaac ggagcatctt taaatccctg caacgcgcca taactcgggt
     2041 cagtgaacca caccgtaccg tcgcttttca ccacgacatc attgggcgag ttaaatcgca
     2101 gcccgcgcca ctcgtcgacg atcgtttcga cctttctcgt cttcaggtcc atgcggctga
     2161 tgcgcgctgg tgtcgactta gtcccctgct cgcaaatcac caaccgccca tcaggatcga
     2221 gcgtcattcc gttagccatg ttagtgtcgg cgctgaagat cgttgcggcg tccggatcga
     2281 gtgggaactg gtcgccatcc aaagcgactc gtttgatagc gacctgtttc cacccttgta
     2341 aaggaatgtt gctgctctcc ggaaccgtag tgaagtaaag cgcattctcc tccttcacat
     2401 acaccggacc ttcgtgagca ttggtttcga tcactgtgta gaactgtgga tccttcccaa
     2461 tgacgtcgta aaactcttcg gaataaacga cgaaatggtc gttgaggatt ttcttatctg
     2521 cgtgagaatt catctgctct cctttggttt caggtttggt cgaagcaagt gttggacaat
     2581 tccagcggct gtattctaag gtgttaggca tgaaactcag actaactaaa gtgttccaga
     2641 aggtgccgga gggatacatc ggattcgtta aggagttacc cggcgccaat actcagggcg
     2701 aaacgctcga agagaccaga gccaacctcg aagaggcaat tgaactggtg ctcgaggcga
     2761 accgggtgtt ggcggaggaa cgccttcggg gccaggacgt tattcgcgaa tccatagcgt
     2821 tgtccgccgc atgaagcgga aagacctgat ccgccacctg gaaacgcatg gctgcgagct
     2881 cttgcgagaa ggcggaagtc ataccatctt gtgaaccgct ccgcccaaac ctcttcgtca
     2941 ataccgcgac atcgcgaggt aaacgacttc ctggctcgaa aaatctgtcg cgacttgcaa
     3001 gtgcccgagc cgagaagagc gtaacaagaa catcgcaaac tctcctcggc tgcttactcc
     3061 aacgtcaatg tatccttcct tgcgcgaaag gcataaacat cgaagctgcg tttgacgtga
     3121 ggttcacaaa cacaacgaaa aagacgaaaa gcgctaaaat cgaccaggta atgtgtcttc
     3181 tcatggcttt actccgacag cccggcaaac tggcgcggca cgttctcaga cgcattgctg
     3241 tttttcctcg acaaccaatc cgctggtcct taagcttgga gtcaacgtga aactcaccac
     3301 actaaaaaaa cagatcgtga ttcttcctct actgttaaca ggcccatgcc tcgctcaacc
     3361 gttcaactcg cgctttgttg cagccgcgca ggagcgctcc gtaacgttgc gaggccgagt
     3421 tgtcgacgcg aacaccggcg aacccattgc taacgtccgc gtcgtagcga cactagcgga
     3481 caaagcgacg atcacagacg ccgatggcgc gttcactctt gaacttccac ctggcccaca
     3541 agagctctac atcacaaccg tcacctacgg tctcgtaaag aagacgatca acgtcggcgc
     3601 cggaacaaac agcaacgtcg aaatcgctct gaacgaagac gccgccgcgt tgacagaaca
     3661 agtcacgatt gcgtctgatc cattcgaaag cactcgcacg acttcgacct tcgaacagac
     3721 gctcaacaag cgggagcttc aagcgacgtc gagcattctc ttgagcgatc cgattcgagc
     3781 agcacaaacc ttgcccggcg tcgccagtaa cgacgacttt cgcagcgagt tttccgttcg
     3841 cggcgcgggc ttcgatcgcg tcgggctttg gcttgatggt gtgctcacag acaattttgt
     3901 acacacggtg gcgggtggtt atcccgacac gggttcgctg tcagtaataa actccgacgc
     3961 gatcaactca gtctcgttga tgagcggcgg tagtcccgcg aacttcggga atcgcaccgc
     4021 cgccgtgttg gacctcgact cgcgcgacgg caatcgggtg aagccatcgg gtcgaatagc
     4081 cgttgcgctg agcggcattt ccggaatgac tgatggtcct atcgccggcg gaaaaggttc
     4141 gtacctcgta gccgggcgca agagttatac ggattatctc gttcgccgcg tgaacgatga
     4201 gaaccagttt accaacaacc cgcccatcct gaattttgcc gatattcagg ggaaactgct
     4261 ttacgatttt tcgaagagga accaggccgg tgtttcggcc gtgttcggcg gcttcgatta
     4321 cgatcgcaat cgcgaccggg aacagttatt tgtaaattcg gtattccgcg gcgagtcgcg
     4381 caacttcctc ctgaacgcgc actggagctt tacgccaaac ccgcaaacgt tttggcaaac
     4441 gcgcttcttc gcacagaaga caaacttcca gaatgtgaat cgcgatgaac tgatcctcaa
     4501 cgacggcgat cgtgatcaat atggcgtacg ttcggatgtg agctttcaac tgcctcgttc
     4561 gaatcgtctc gaaacaggtc tttacgttcg ctcggtaagt gtcaacagtt tcagccagcg
     4621 cttctcgttc gcgaatgttc cgttcgactt cggcagcttt gacgaaagcg gaaccgagca
     4681 gtcgtattac gctcaggaca cctggaccaa tgaacgctgg cgctttcaat tgaccggcgg
     4741 actgcgcgtc gaacacagcg agataacgtc acaaacgttg acctcgccac gagcgtcgct
     4801 cacgtggtcc atcaacaatc attggcgcgt acacgcgatg gccgggcgct attaccagtt
     4861 ccccgatttg ga
//
LOCUS       DASWTX010000839         2283 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_270594, whole genome shotgun sequence.
ACCESSION   DASWTX010000839 DASWTX010000000
VERSION     DASWTX010000839.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2283)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2283)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2283
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270594"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..411
                     /locus_tag="VGD38_12675"
     CDS             <1..411
                     /locus_tag="VGD38_12675"
                     /inference="COORDINATES: protein motif:HMM:NF024914.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0728921.1"
                     /translation="ERPTMPPPVDSRLVRAARAPVFGLEMFAQLARSRVTLNSHIDMS
                     EQYASNMRLYEATGVASCLLTDWRPNMPELFDVDTEVVTFKTADECVEKVKYLLEHED
                     ERQTIARAGQTRTLRDHTFDNRAAQLDDLIREKL"
     gene            408..1235
                     /locus_tag="VGD38_12680"
     CDS             408..1235
                     /locus_tag="VGD38_12680"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HEY0728922.1"
                     /translation="MSQSVTVKQTLVRYLPPLVIHWGKWLSNSGYRHKSHHLSRLKSI
                     PRYQPTTTDILGKPFEIVDSSSFIWMYNEIFEREIYRFRAKTERPYIIDCGANIGLSV
                     SYFKRLYQQSRILAFEPDEKIFEVLKRNVAEQTDVELICRAVWTSETSLSFMSEGADG
                     GRLSGPGDAKDEVVQTIRLRDYLQQPVDLLKLDIEGAETDVLEDCADVLSNVECLFVE
                     YHSFAGRPQTIHKLTTILSGAGFRLHIHPENASPQPFLRREVYGGMDLQLNVFAFRE"
     gene            1245..>2283
                     /gene="asnB"
                     /locus_tag="VGD38_12685"
     CDS             1245..>2283
                     /gene="asnB"
                     /locus_tag="VGD38_12685"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HEY0728923.1"
                     /translation="MCGIVGIAGKQDSLWLGRMNSVVEHRGPDDFGEYRDPSANVALA
                     MRRLSILDLSSGHQPMANADQTVWIVYNGEIYNSPEIRERLVNKGCSFKTDNSDTEVL
                     LHLYEEKQEAMLDELNGMFAFVIYDQKRTRLFGARDRVGIKPFYYVEQSGLFAFASEL
                     KSLLTLPTIDRELDFQSLYHYMTLLFVPGERTIFSSVKRLPAGHYFSFDLSSRALSIR
                     RYWKLKTDRAEHNRSEAEWAELIRHELREAVRRWTLSDVPVGCSLSGGLDSSTVVALL
                     SEMGYGPIKTYSLGFASEDEAAWNELHLARKVSERFHTEHREIILQPEDLLNDLVQMV
                     WHLDEPYAGGLS"
BASE COUNT          474 a          626 c          664 g          519 t
ORIGIN      
        1 gagcggccaa cgatgccgcc gccggtcgac tcgcgcctgg tccgcgccgc gcgtgcgcct
       61 gtcttcggac tggagatgtt cgcgcaactc gcgcgcagcc gggttacgct gaactctcac
      121 atcgacatgt ctgagcaata tgcttcgaac atgcggcttt acgaagccac cggcgttgcg
      181 agttgtttgc tgaccgactg gcggccgaac atgccggagt tgtttgacgt ggacactgaa
      241 gtggtcacgt tcaaaaccgc cgacgagtgc gtcgagaaag ttaagtacct gctcgaacac
      301 gaagacgaac ggcaaacgat cgcgcgtgcc ggtcagacac gcacgctgcg cgatcacact
      361 tttgataatc gtgccgcgca gttggacgat ttgattcgag agaagctttg agccaatcag
      421 tcaccgtcaa acagacgctc gttcgctact tgccgccgct ggtgatccac tggggcaagt
      481 ggctctcgaa ttccggctac cggcacaagt cgcatcatct cagccggctg aaatcgatcc
      541 cgcgttatca gcctacgacg acggacatcc tcggcaagcc gtttgagatc gtcgactcgt
      601 cgtcgttcat ctggatgtac aacgagatct tcgagcgcga gatctatcgg tttcgcgcga
      661 agacagaacg gccgtacatc atcgactgcg gcgcaaacat cggtttgagt gtttcttatt
      721 tcaaacgcct ctatcagcag agccgcattc ttgctttcga gccggacgag aagattttcg
      781 aagtgttgaa gagaaacgtt gcggagcaaa cggacgtcga gctgatctgc cgcgcggtgt
      841 ggacctcgga gacgagcctg agtttcatga gcgagggcgc cgacggtgga cgcctttccg
      901 gtcccggcga tgctaaagac gaagtggtgc aaacgattcg cttgcgcgac tatcttcagc
      961 agccggtcga tctgctcaag ttggatatcg aaggcgcgga aacggacgtg ctcgaagact
     1021 gtgcggacgt gctctcgaac gtcgagtgct tgtttgtcga gtatcattcg ttcgccggac
     1081 gcccgcagac gattcacaag ctgacgacga ttttgagcgg cgcaggtttt cgtttacaca
     1141 ttcatcccga aaacgcgtcg ccgcaaccgt ttttgcgtcg cgaagtttac ggcgggatgg
     1201 atctgcaact gaatgttttt gcttttcgcg agtagttcga aaccatgtgt ggcattgtcg
     1261 gcatagctgg aaaacaggat tcgttgtggc tcgggcgaat gaattcggtc gtcgagcatc
     1321 gcggccccga tgacttcggc gagtaccgcg atccgtcggc gaatgtggcg ctggcaatgc
     1381 gccggttgag tattctcgat ctgtcgagcg gtcatcagcc gatggcgaat gccgaccaga
     1441 ctgtgtggat cgtctacaac ggcgagatct acaactcgcc tgagattcgc gaacgcctcg
     1501 ttaacaaagg ctgctcgttc aagaccgaca actccgacac ggaagtcctg cttcatcttt
     1561 acgaagaaaa gcaggaagcg atgctcgacg agctgaacgg aatgtttgcg tttgtgattt
     1621 acgatcagaa acgcacgcgg ctgtttggcg cgcgcgatcg cgtcggcatc aagccgttct
     1681 actacgtcga acaatccgga ctgtttgcgt ttgcttccga gctcaagagc ttactgacgc
     1741 tgcccacgat cgatcgcgaa ctcgactttc agagtcttta tcactacatg acgctgctgt
     1801 tcgttcccgg cgaacgcacg atcttcagct ctgttaagcg tcttcccgcg ggtcattatt
     1861 tcagcttcga tctctcgtcg cgcgcgctct cgattcgtcg ttattggaaa ctcaaaacgg
     1921 atcgcgccga gcacaatcga tccgaagccg agtgggccga gctcattcga cacgaactgc
     1981 gcgaggctgt gcggcgctgg acgttgagtg acgttccggt tggttgctcg ctttccggcg
     2041 gattggattc gtcgaccgtt gtcgcgctgc tcagcgagat gggttacggc ccgataaaaa
     2101 cctactcgct cgggtttgct tctgaagatg aagccgcgtg gaacgagctt catctcgcgc
     2161 gaaaagtgtc ggagcgtttt cacacagagc atcgcgagat catcctgcaa ccggaagact
     2221 tgctaaacga tctggtgcag atggtctggc atctcgacga gccttacgcg ggcggtctgt
     2281 cgt
//
LOCUS       DASWTX010000840         1964 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_165343, whole genome shotgun sequence.
ACCESSION   DASWTX010000840 DASWTX010000000
VERSION     DASWTX010000840.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1964
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165343"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..218)
                     /locus_tag="VGD38_12690"
     CDS             complement(<1..218)
                     /locus_tag="VGD38_12690"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY0728924.1"
                     /translation="MTVVDDLSLELDDGECVVLLGPSGCGKTTTLRMLAGLESVTSGD
                     IYIGDERINDVPTQRRDLAMVFQSYALYP"
     gene            complement(273..1106)
                     /locus_tag="VGD38_12695"
     CDS             complement(273..1106)
                     /locus_tag="VGD38_12695"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEY0728925.1"
                     /translation="MRDSGKGIFRTGLLVLALLAALTPVYWMITISLKIEVDQFAYPP
                     KWFWFTPTLRHYYDAFVTRSFGQYLLTSAIVAVVSTACALVIGTLAAYALTRFRLPYN
                     LDRKLSLWILSTRMFPAIVTAVPLFLMMRDLRLLNTKASLIVVYTAFNLPFVVWMMRG
                     FFAEVPRDLEEAALVDGDSRLGALVRVVLPLVSPGLAATAVFCLIVSWNEFLFALVLT
                     QTDAAMTLPVGIAGRVTQYEIKWGVMSAAGAVAMMPILIFALAMQRYLVRGLSLGAVK
                     G"
     gene            complement(1096..>1964)
                     /locus_tag="VGD38_12700"
     CDS             complement(1096..>1964)
                     /locus_tag="VGD38_12700"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEY0728926.1"
                     /translation="NAPNRRELLLPYLLVAPALAVLLALSIYPLLYSITISLQQETAA
                     GVVWTLAHFKRLLTDNFFRTAMVHTVVYAVAALTCEFLIGLGLALLLNQQIRGRGLFR
                     ASLLVPMMLPTVVVGVVWRLLLNPNFGAINGTLKQLGVNTESLTWTASPRLAFVAVVA
                     VDVWQWTPFVFLVLLAGLQAIPQEPYEAALIDGSTRWQTFRHVTLPLLKPAILIVLLL
                     RTMDLLRVFDQIFILTEGGPGFATEMISLYIYRTAFRFSDFGYAAAMSFVLLAVTNVV
                     SVVYLKVLQNER"
BASE COUNT          549 a          670 c          439 g          306 t
ORIGIN      
        1 ggatacagcg cgtaactctg aaaaaccatc gccaagtcgc gtcgttgcgt cggaacgtcg
       61 ttgatgcgtt cgtcgccaat ataaatatcg ccactcgtga cactctcgag ccccgcgagc
      121 atccgcaacg tcgtcgtctt cccacaacca gacggaccga gcaacacgac acactcacca
      181 tcgtcgagtt cgagcgagag atcatcgact acggtcaact caccgtaccg cttattgact
      241 ctgttaaacg aaacgcgcat cgatccctac gttcagcctt tcacagctcc gagagacaat
      301 ccccgcacta agtaccgctg cattgcgagc gcaaagatta gtatcggcat catcgccacc
      361 gcgcccgccg cgctcatcac gccccacttg atctcatact gcgtcacgcg ccccgcaatc
      421 ccgaccggca acgtcatcgc cgcatccgtc tgggtcaaca ccagcgcaaa caagaactca
      481 ttccacgaaa cgatcaaaca aaacaccgcc gtggccgcga gccccggact caccaacggc
      541 aacaccacac gcaccagcgc acccaaacgc gaatcgccat caaccagcgc cgcctcctcc
      601 aaatcgcgcg gcacttccgc aaagaacccg cgcatcatcc aaaccacaaa cggcaggttg
      661 aaagctgtgt aaacaactat cagcgacgcc ttcgtgttga gcagcctcaa gtcgcgcatc
      721 atcaaaaaca gcggcaccgc agtcacgatc gcgggaaaca tgcgcgtcga gagaatccac
      781 aacgacagct tgcgatcgag attgtaagga agccgaaacc gcgtcaacgc atacgccgcg
      841 agcgttccga tcaccagcgc gcacgccgtc gaaacaaccg ccacgatcgc gctcgtcaac
      901 aagtattgcc caaacgagcg cgtcacaaac gcgtcgtaat aatgccgcag cgtcggcgtg
      961 aaccagaacc acttcggcgg atacgcaaac tgatccacct cgatcttcag cgagatcgtg
     1021 atcatccagt aaaccggtgt cagcgccgca agcaacgcca gcaccagcaa tccagttcta
     1081 aaaatccctt tcccgctatc tctcattttg caaaaccttc aagtaaacga cactcacgac
     1141 attcgtaacc gcaagcaaca caaacgacat cgccgccgca tacccgaaat cagaaaaccg
     1201 aaacgccgtc cggtagatat aaagactgat catctcagtc gcaaaccccg gcccgccctc
     1261 agtcaaaata aaaatctgat cgaacacacg cagcagatcc atcgtgcgca acaacaacac
     1321 gatcaggatc gcgggcttca gcagcggcaa cgtcacgtgt cgaaacgttt gccagcgggt
     1381 cgagccgtcg atcaacgcgg cttcataagg ctcctgcgga atcgcctgca gccctgcgag
     1441 caaaaccaga aacacaaacg gtgtccattg ccacacatca accgcaacca ccgcgacaaa
     1501 cgcgagccgc ggcgacgccg tccacgtcaa actttcagtg ttcactccca actgcttcag
     1561 cgttccatta atcgcgccga agttcggatt caacagcagt cgccaaacga cgccgaccac
     1621 caccgtcggc aacatcattg gcaccaacaa actcgcccga aacagtccac gcccgcgtat
     1681 ctgctggttc aacaacaacg ccaagccaag accaatcaaa aactcacacg tcaacgccgc
     1741 aaccgcgtaa acaaccgtat ggaccatcgc cgtacgaaag aaattatccg taaggagccg
     1801 tttgaaatgc gcgagcgtcc acacgacacc agccgcagtt tcctgttgca aactgatcgt
     1861 gatcgaatag agcagcgggt aaatcgacag cgcgagaagc accgccagcg ccggcgcgac
     1921 gaggaggtag ggcagcagca gttcgcgcct attgggcgcg ttga
//
LOCUS       DASWTX010000841         1952 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_341345, whole genome shotgun sequence.
ACCESSION   DASWTX010000841 DASWTX010000000
VERSION     DASWTX010000841.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1952
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_341345"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1585
                     /locus_tag="VGD38_12705"
     CDS             <1..1585
                     /locus_tag="VGD38_12705"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY0728927.1"
                     /translation="RSASGEDRWLDLIVSPIKKLEETIGFRGLARDITERKRVEEALR
                     DSEERYRLLFESTPQPIWVYNEETLTFLAVNEAATRTYGYSRDEFLSMTINDLRPEED
                     IPTLLIKNAEDPDELVISSPWRHQTRDKRTIYVEMSSHPVVFDGKNSKLVIVNDVTER
                     KLLDEKQQRLHTSLQQSAAEWRQTFNAIEFPVLIVDLAGAIKRSNLAAEQIAGIAAEE
                     LVDRLVGELGDNQPWKKAAELIDIFRDNPSPISAEVKDAVSGKTWAITLYQINEFGSV
                     RERVILIAQDISKRAELEASLRQSEMMSLLGSLVAGVAHEVRNPLFGISSILDAFETR
                     FADRTEYLRYTNVLRDEVGRLTVLMEELLEYGKPFRGELFLVPLDEMIARSIRACLPA
                     AEVAQVKLESDVAASLPKIRIDRRRLSKVFVNLIENAIQHSPQQSVVTVEARRVIDGG
                     HDWVQCAIKDSGPGILEQDIPKIFEPFFSKRRGGTGLGLAIAHRIMQEHGGKLIAGNN
                     STGGACMIARFPTPTEEDS"
     gene            1588..>1952
                     /locus_tag="VGD38_12710"
     CDS             1588..>1952
                     /locus_tag="VGD38_12710"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0728928.1"
                     /translation="MSRNKVLVVDDESGVRFGIRDFLEQHGYEIEEAESCQDAQHIFR
                     TSRPDIVIADYMLPDGTALDLLPRLKEIDSGIPLLVLTAHGSIDLAVRAIKEGAEQFL
                     TKPLELPTLLVILQRLLQK"
BASE COUNT          453 a          556 c          578 g          365 t
ORIGIN      
        1 ccggtccgcg agcggcgagg atcgatggct ggatctcatt gtttccccga tcaagaaact
       61 cgaggaaacg atcggcttcc gcggcctcgc ccgcgacatc accgaacgca aacgggttga
      121 ggaagcactg cgcgattcgg aagagcgtta ccgtctgctg tttgaatcca cgccgcaacc
      181 gatctgggtt tataacgagg agacgctcac gtttctcgcg gtgaacgagg cggcgacccg
      241 cacctacggc tattcccgcg atgaatttct ctcgatgacg atcaacgatc ttcggcccga
      301 ggaagatatt ccgacgctgc tgatcaagaa cgccgaggac ccggacgagc tggtgatctc
      361 cagtccgtgg cgccatcaga cgcgcgacaa aaggacgatc tacgtcgaga tgagctcgca
      421 tccggtcgtg ttcgacggca aaaacagcaa gctcgtgatc gtcaacgacg tcaccgaacg
      481 aaagctgctc gacgagaaac agcaacggct acacacgtcg ctacaacagt ccgcggcgga
      541 gtggcggcaa acgttcaacg cgatagagtt tcccgtgctg atcgtcgatc tggccggcgc
      601 gatcaagcgt tccaatctcg cggcggaaca gatcgcgggc atcgcggcgg aagaactggt
      661 ggaccggctc gtcggcgagc tcggcgataa ccagccgtgg aaaaaggccg ccgagttgat
      721 cgacatcttc cgcgacaatc cctcacccat ttcggcggaa gtaaaagacg ccgtcagtgg
      781 aaaaacgtgg gccatcacac tttaccaaat caatgagttc ggttcggtgc gcgagcgcgt
      841 gatcctgatc gcgcaggaca tcagcaaacg cgcagagctc gaagcgtcgc tgcgacagag
      901 cgagatgatg tcgttgctcg gttcgctcgt cgcgggcgtg gcccacgaag tcagaaatcc
      961 gctctttggc atctcgtcga tactcgacgc gtttgagacg cgattcgccg atcgcaccga
     1021 atacctgcgt tatacaaacg tcctgcgcga cgaggtgggc cgtttgaccg tgctgatgga
     1081 agagctgttg gaatacggca aaccgttccg cggtgagctg ttcctggtgc cgttggacga
     1141 gatgatcgcg cggtcgatca gggcgtgtct gccggcggcg gaagtggccc aggtgaaact
     1201 ggaaagcgac gtcgcggcct cgctgccgaa gatccgcatc gaccggcgcc gcttgtcgaa
     1261 agtttttgta aacttaatcg agaatgcgat tcagcactcg ccacagcaga gcgtggtaac
     1321 tgttgaagcg cgccgcgtga ttgacggcgg ccacgactgg gtccagtgcg cgatcaaaga
     1381 ttccggaccc ggaattctgg aacaggacat tcccaaaatc ttcgaaccat tcttttcaaa
     1441 acggcgcggc gggaccggat tgggattggc tatcgcccac cgaatcatgc aggaacacgg
     1501 aggaaaattg atcgcgggca ataattcgac cggcggagcc tgtatgatag cgcgcttccc
     1561 aacgccgacg gaggaagaca gttaaaaatg tccaggaaca aggtcttggt tgtcgacgat
     1621 gagtcgggag tcagattcgg catccgtgat ttcctcgaac agcacggata cgagatcgaa
     1681 gaggcggaga gctgccagga cgcccaacac atttttcgta cttccagacc ggacatcgtc
     1741 atcgccgact acatgcttcc cgacgggacc gcgctcgatc tgctgccgcg tctgaaagag
     1801 atcgactccg gaattcccct gctggtgttg acggcacacg gttcgatcga ccttgcggtg
     1861 cgcgctataa aagaaggcgc cgaacaattc ctgaccaagc cactggaact gccgacactg
     1921 ctcgtaatcc tgcagcgttt actccaaaaa ca
//
LOCUS       DASWTX010000842         4904 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_384760, whole genome shotgun sequence.
ACCESSION   DASWTX010000842 DASWTX010000000
VERSION     DASWTX010000842.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4904)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4904)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4904
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384760"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1705
                     /locus_tag="VGD38_12715"
     CDS             <1..1705
                     /locus_tag="VGD38_12715"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728929.1"
                     /translation="QPFFVQGDWDKIEGAADGKGISVLMEKGMGAEERKHAEAMIAFT
                     GAARAFFAGMFGPAPDVPLRLVAVRRGAGFSDGGTVLIDADALRLPKIDAATAMSVAE
                     DVVRLWIGGQTPVRGEGGGVLRDALVRYLATQFLEKQFGREAVQSELYQERIAYAAVA
                     QRDGPLARASQLDSTYFGSVPNRGAMFWRLVERKLGRDAFVGVLKDATQSGKTDQGGL
                     TLAGLRQALAARGGESLKSLMEQQLDQVVDTDLMVGLPVQRGADWVSALRNIGSIDVT
                     VTVAATTDTGQVVTAEATVPAKNFGEAVFKTPAKIVRVEVDPEKFYPQMDYGNDVVPR
                     AKDLPDALSEATSQLGGQDFVKAEATARAMLNVAPRFQEARILLARALLGQNKLDEAE
                     KLFRSALEEGLPFPATLAWANIGLGEIAMKRNQPAEAAKRFSDAVVASRDYPSSLAAR
                     LARIRAEAAANSAPPVDPAVQTFANQLSQALVSNRKTDLEARIVSGELVRFINGSIGT
                     ETWDTKVVRTEQLNANLIAADVQIQLKKLGTAGSGPAVFLIARTPAGLKLSGIDLFEV
                     R"
     gene            1702..2232
                     /locus_tag="VGD38_12720"
     CDS             1702..2232
                     /locus_tag="VGD38_12720"
                     /inference="COORDINATES: protein motif:HMM:TIGR01670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD hydrolase family protein"
                     /protein_id="HEY0728930.1"
                     /translation="MTDQEIQSRAARIKLFLMDCDGVMTDARIWVLENGEDQKAFNTR
                     DGLGLDLWHRAGLKSGVISGRVSSALTRRAEKLGMSYVLQGCDDKEQAFAEILSVAGL
                     TNAEVAFAGDDLNDIPLMRQAGLAIAVADAALETREHAHYITQARGGHGAVREIVELI
                     LKAQGRWDDLVQRYLR"
     gene            2498..3031
                     /locus_tag="VGD38_12725"
     CDS             2498..3031
                     /locus_tag="VGD38_12725"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEY0728931.1"
                     /translation="MQEVGALCARAGKTLNECLDAVLDAAIAVTGADKGNIQLVDESG
                     ALRIAAQSGFDESFLNYFASVGPEDHAACGAAMQSGTRVIVEDVTQSKIFTGQPSLQV
                     LLEAEVHAVQSTPLVCRDGRLLGMLNNHFGHVHRPSELELRYLDLLARMAADVIERRQ
                     AHERMQESEKQVRRAHD"
     gene            3044..4429
                     /locus_tag="VGD38_12730"
     CDS             3044..4429
                     /locus_tag="VGD38_12730"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0728932.1"
                     /translation="MRTSPIPLLILQSDLRVVSGNEAFYEVFEIEPEEAKGRSVYELA
                     NGEWNIPRLRELLENILPHEHWFHGFEITHTFENIGERTLLLNARRMEVEAGALERIV
                     LAIDDVTDRKRVESERERLLKTEQDLRHVSEEANRLKDEFLAIMSHELRNPLNVILGY
                     SELLPRTEETSRSPELLRTSEAIKRNALIQARLIRDLLDLSRLRSGKISLNNETVSLL
                     VAVDHAVETARAEADAKNIAIEIAVFSEPLFVQGDSVRLEQILWNLFEMFRQGDAGMN
                     RPHSGMGIGLAVVNQLVDLHKGWISAFSAGPAKGARFTLRFPLSVEVKTLPAPALKLV
                     TALDNLSILVVDDSVETTEMLTTLLSIKGAKVIPATSGNEALQVMAEREVDVVLSDIS
                     MPGMDGFEFLKRLRQIPGRTDVPVLALTGFGRPEDIERAKAEGFFSHVTKPFQVDALI
                     GVLQKLPKKQR"
     gene            4527..4901
                     /locus_tag="VGD38_12735"
     CDS             4527..4901
                     /locus_tag="VGD38_12735"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0728933.1"
                     /translation="MSPPHARILLVEDHRDTSEFLEVFLAQSKFEVKTASTIDEALKL
                     ASADSFGLFIFDAVLPDGSGVDLCRSIRKFNERTPILFCSGLAYEADIKNALGAGAQA
                     YLVKPVDLAELVDSINQLIGKD"
BASE COUNT         1081 a         1287 c         1532 g         1004 t
ORIGIN      
        1 tcagccattc ttcgtgcagg gcgattggga caagattgaa ggcgccgctg acggcaaagg
       61 catcagcgtg ttgatggaga agggcatggg cgcggaagag cgcaagcacg ccgaagcgat
      121 gattgctttc accggcgccg cgcgagcttt cttcgccggg atgtttggtc cagcgcctga
      181 tgtgccgttg cgtttggtgg cggtgcgacg tggcgcagga ttcagcgacg gcggcacggt
      241 gctgatcgac gctgacgcgt tgcgcttgcc gaagattgat gcggcgaccg caatgtcggt
      301 ggcggaagac gtggtgcgtt tgtggatcgg tggacagacg ccggtgcgtg gcgaaggcgg
      361 cggcgtgttg cgcgatgcgc tggtgcgtta tctcgcgacg cagtttttag agaaacagtt
      421 tggccgcgaa gcagtgcagt cggagttgta tcaggaacga atcgcgtatg ccgcggtggc
      481 gcagcgcgat ggaccattgg cgcgtgcgag ccagttggat agcacgtact tcggatcggt
      541 gccgaatcgt ggcgcgatgt tttggcgact ggtcgagcgc aaactcggaa gggatgcgtt
      601 tgttggtgtt cttaaggacg ccacgcaaag cggcaagaca gatcaaggcg gattgaccct
      661 cgctggtttg cggcaggcgc tggcggcgcg cggtggcgag agtctcaaga gcttgatgga
      721 gcagcagctc gaccaggtag tcgacacgga cctgatggtg ggtttgccgg tgcaacgtgg
      781 cgctgattgg gtttcggcat tgcgcaacat cggttcgatt gacgtcacag tgacggttgc
      841 tgcgacaacg gataccgggc aagttgtgac tgccgaagcg actgtgcccg cgaagaattt
      901 tggtgaagcg gtgttcaaga cgccggcgaa gatcgttcgc gtcgaagtcg atcccgagaa
      961 gttttatccg cagatggact acggcaacga cgtagtgccg cgagcgaaag acttgcccga
     1021 cgcgctgagc gaagcgacgt cgcagttggg cgggcaggac tttgtcaaag ctgaagcgac
     1081 tgcgcgcgcg atgttgaacg ttgcgccgcg tttccaggaa gcgcgcattc tgctagcgcg
     1141 tgcgttgttg ggccagaaca agctcgacga ggccgagaag ctgtttcgtt cggcgcttga
     1201 agagggactg ccgtttccgg ccacgctcgc gtgggccaac atcgggctcg gcgagatcgc
     1261 gatgaagcgc aaccaaccgg cggaagcggc gaagcgtttt agcgacgcgg tggtggcgag
     1321 ccgtgattat ccttcgtcgc tcgcagcgcg tttggcgcgt attcgcgcgg aggcggcggc
     1381 gaacagcgcg ccgccagtcg atccggcggt gcagactttt gcgaaccagc tatcgcaggc
     1441 gctggtgagt aacaggaaaa cggatttgga agcgcgcatt gtctccggcg agttggtgcg
     1501 gttcatcaat ggaagcatcg gcactgagac gtgggacacg aaagtcgtgc gcaccgaaca
     1561 gctcaacgca aacctgatcg cggctgacgt gcagattcag ttgaagaaac tcggcacggc
     1621 tggttccggc ccggctgtgt tcctgatcgc gcgcacgcct gccgggttga agttgtcggg
     1681 catcgatctt tttgaggtac ggtgacggac caggagattc aatcgcgagc cgcacgcatc
     1741 aagctgttct tgatggattg cgacggtgtg atgaccgacg cgcggatctg ggtccttgaa
     1801 aacggcgaag accagaaagc attcaacact cgcgacgggc tcggccttga tttgtggcac
     1861 cgcgcgggac tgaagtcggg agtcatctcc ggccgcgtct cgagcgctct cacgaggcgc
     1921 gctgagaaac tcggaatgtc ttatgttctt cagggctgtg acgacaagga acaggcgttt
     1981 gccgagatac tgtctgttgc cggactcaca aacgccgagg tcgctttcgc cggcgacgat
     2041 ctcaacgaca tcccactgat gcggcaagcg ggtctcgcca tcgccgtcgc cgacgccgct
     2101 ctcgaaacac gcgaacacgc ccactacatc acgcaagcgc gcggcggtca cggcgccgtg
     2161 cgtgagatcg tcgagctgat cctgaaagca cagggccgct gggacgatct cgtccaacgt
     2221 tacctccgct agtctcgaaa atttcccacc tcgtttagca atcagtttcc ggtatgtgcg
     2281 ccaacgcacc aactagcgcg agagtaaaga gtagactcgc atccctttta acataacggt
     2341 cacaactaaa ctgacgtatg ttgaaagcaa gtaagtacgt tgtctttcct gtacccctat
     2401 agaaagtcgc cgggcgcaac agcgtgccga aaaacaacga gaactgttaa ccatgagcag
     2461 cgagcggagt gttgccgacc tgcaggcaat gacgcggttg caggaagtcg gcgctttatg
     2521 tgcacgcgct ggaaaaactt tgaacgagtg tctggacgcg gtcctcgacg cagcaatcgc
     2581 ggtcaccgga gcagacaaag gcaatattca actggttgat gaatcgggcg cgctcagaat
     2641 cgccgcgcaa agtgggtttg acgaatcgtt tcttaactat tttgccagcg tcggtcctga
     2701 agaccacgca gcgtgcggcg cggcaatgca gtcagggaca cgcgtgatcg ttgaggacgt
     2761 gacgcaaagt aaaattttta ccggacagcc ctcactccag gtgctgcttg aagcggaagt
     2821 gcacgcggtt cagtccacgc cgcttgtctg ccgcgatggc cgtctgctcg gcatgctcaa
     2881 caaccatttt gggcatgtgc atcgtccctc ggagcttgaa ctgcgctacc tggacttgct
     2941 ggcccgcatg gccgcggacg tgatcgagcg gcggcaggcc cacgaacgta tgcaagagag
     3001 cgagaagcaa gtgcgccgcg cgcacgacta agctgaagcc acgctgcgca cttcgccgat
     3061 cccgcttctg atattgcaaa gcgacttgcg cgtggtgagc ggcaacgagg cgttttacga
     3121 agtcttcgag atcgaaccgg aggaggcaaa aggccgatcg gtttacgaac tggcgaatgg
     3181 tgagtggaac atcccgaggc ttcgcgaatt gttggagaac attcttcccc atgaacattg
     3241 gttccacggg ttcgaaatca ctcacacgtt cgaaaacata ggcgagcgca ccctgctgct
     3301 aaacgcccgg cgcatggagg tcgaagcagg cgcactcgag cgaattgtgc tggctatcga
     3361 cgacgtcacc gatcgcaaac gggtcgaatc cgagcgtgaa cggctactga aaaccgaaca
     3421 ggatctgcgt cacgtttcgg aagaagcgaa ccggttgaaa gacgagtttc tggcgatcat
     3481 gtcgcacgag ctgcgcaacc cgctgaacgt gattctcggt tattcagagt tgctaccgcg
     3541 aacggaagaa acgagccgtt caccggaact gcttcgtacc agcgaggcca tcaagagaaa
     3601 tgcgctcata caggcgcgtt tgatccgcga ccttctcgat ctctcacgtc tgcgaagcgg
     3661 aaagatcagt ttgaataacg aaacagtttc actgctggtg gctgtcgatc acgcagtcga
     3721 aactgcgcgc gctgaggcgg acgcgaagaa cattgcgatc gaaattgcag tgttcagcga
     3781 accgttattc gtccagggcg actcggtgcg actggagcaa attctctgga acctgttcga
     3841 gatgtttcgc cagggtgatg ccggcatgaa tcgaccgcac tccggcatgg gtattggtct
     3901 cgcagttgtg aatcaattgg tcgatttgca caaaggctgg attagcgcgt tttctgcggg
     3961 tcccgcgaaa ggcgccaggt ttaccctgcg atttccattg agcgtagaag taaaaacttt
     4021 accggcgccg gcactcaagt tggttacagc cctggacaat ctttcgatat tggttgttga
     4081 cgactcagta gagacgaccg aaatgctcac cacgctattg agcataaagg gcgccaaagt
     4141 gattccggcc acgagtggaa atgaagcgct gcaggttatg gccgaaaggg aagtggatgt
     4201 ggttctttcc gacatctcga tgccgggaat ggacgggttt gagttcctga agcggctgcg
     4261 tcaaataccc ggtagaacag atgtgccggt gttagcgctg acgggctttg gccgtcccga
     4321 agacattgaa cgcgcgaaag ccgaaggctt cttctctcac gttacaaaac ccttccaagt
     4381 agacgccctc atcggcgtgc tgcaaaaact tccgaagaag caacgctgag ccgtcaatta
     4441 aaacacttat gacaggttcc gtaccgactt cgaatacgga cagagcttag gattacatgc
     4501 ggtaacgatc tgcagcggtc ctgtgtatga gccccccaca cgcgcgaatt ctactcgtcg
     4561 aagatcatcg ggatacgtcc gagtttctcg aggtgttttt ggcccaatca aaattcgagg
     4621 tgaaaaccgc gtcaacgatc gacgaagcat tgaagctcgc cagcgctgac agtttcggtc
     4681 tgtttatttt cgacgcagtc ctgcccgacg gttcgggcgt ggacctatgt agaagcattc
     4741 ggaagtttaa cgagagaacg ccaatcctgt tctgttccgg tctcgcgtat gaagccgaca
     4801 taaagaacgc gctcggcgcc ggtgcacagg cgtatctggt taaaccagta gacttggctg
     4861 agttggtcga ctcgataaac caactgattg gcaaagacta atct
//
LOCUS       DASWTX010000843         2858 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_165390, whole genome shotgun sequence.
ACCESSION   DASWTX010000843 DASWTX010000000
VERSION     DASWTX010000843.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2858)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2858
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165390"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..283)
                     /locus_tag="VGD38_12740"
     CDS             complement(<1..283)
                     /locus_tag="VGD38_12740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728934.1"
                     /translation="MKKLFILLLVLGITISPVFAQTQPAQQPTPTSEELEQQKAERKK
                     NAFRLLDQIIDEAQSLRLPENRVRVQTTAADVLWDSNPGRARSLFTMAAE"
     gene            397..1104
                     /locus_tag="VGD38_12745"
     CDS             397..1104
                     /locus_tag="VGD38_12745"
                     /inference="COORDINATES: protein motif:HMM:NF015735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HEY0728935.1"
                     /translation="MKRVLVLFTLLCLVVSVAAQQEQKQQAEPQSKLKEFQFVLLKRG
                     PKEVTTGWENSDLRKQHLAYAQALLEADKAMIAGPIQNDPELRGVFIFRTKSADEARG
                     WIGADPAVAAGHFAVEMHPWWSEDVMKKTTTPQKMMTAYLAFLVRGDKWTPERTPQTA
                     AIQKAHLENIGKLAEMKKLVVAGPFGDNGTLRGIFVFRVNSIDEARELSATDPAVQAG
                     RLALQIHPWIVPEGILP"
     gene            1104..1736
                     /locus_tag="VGD38_12750"
     CDS             1104..1736
                     /locus_tag="VGD38_12750"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY0728936.1"
                     /translation="MIRNQIGPETGAQAISLRILEFEPGLSPVLRNDDLDEVLFALDE
                     CKIFIDDRAHAVEPQSGIFIPAQKAFRVENPGPEPVSFVSSLAPRQQGGINTSIVRLA
                     DQRAMPTADRWYRVLIDSEVTQFVGSIPPGRAPDHFHEYEEVLFILKGEGRVWLGGDS
                     KPIGYGSCIYLPRRQVHCVENTGTGELRLLGVFYPAGSPAVRYETSTQNP"
     gene            complement(1720..2736)
                     /locus_tag="VGD38_12755"
     CDS             complement(1720..2736)
                     /locus_tag="VGD38_12755"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY0728937.1"
                     /translation="MNLFPASYLGLLSTGELQQRVEALEKLLESCTVCPRDCLNNRLN
                     NDIAACYSGRLPIVSSYTAHFGEEPPLVGKRGAGNIFFGNCNLRCVYCQNYQISQTHK
                     QQLKNEVTHERLAEMMLELQGRGCHNVNFVSPTHFAPQMARSILLAAQQGLNVPIVYN
                     TNAYDAVSVLRLLDRVVDVYLPDLKYADDESGYVYSKVSGYKEFSRLALKEMFRQTGD
                     ELVYDQNGLLRRGLVIRLLVLPNDVGSVRESIEWIRDELSPRVAISLMAQYYPTHQAE
                     TNKRYVLLSRRIRESEWMKATSALEELGMEEGWVQEFDGASYYYRPDFDDAERPFRDI
                     RDFE"
BASE COUNT          605 a          784 c          832 g          637 t
ORIGIN      
        1 tttcggcggc cattgtaaac agcgaacgcg cgcgtccggg gttgctgtcc cagagcacat
       61 cggcggccgt ggtctgcacg cgcacacggt tctcgggcag gcggagcgac tgcgcttcgt
      121 cgatgatctg gtcgagcagc cggaaggcat tcttcttccg ttcggccttt tgttgttcca
      181 actcttcgga ggttggggtt ggttgttgag ctggttgtgt ctgggcgaaa acaggggaga
      241 ttgtgatgcc gaggaccaac agcaggataa atagtttttt catgcgtctt tacctctgcg
      301 gacgggactg gccggaatcg tacaattccg ggttcgtctt tagcaattcg ccagctataa
      361 ttcccacgtt ttccgacccc agcaaggaac attcaaatga aaagagttct ggttttattc
      421 acgttgttgt gtcttgtcgt ttctgtagcc gcgcagcagg agcagaaaca gcaagccgag
      481 ccgcaatcca agctgaaaga gtttcaattt gtgttgctga agcgcgggcc gaaggaagtc
      541 acgacgggtt gggagaattc cgacctgcga aaacagcacc tcgcttacgc gcaggcgttg
      601 ctggaagcgg acaaagcgat gattgcggga ccgattcaga acgatcccga actgcgcggc
      661 gtctttattt tccgcacgaa gtcggcggat gaggcgcgcg gttggatcgg cgccgatccg
      721 gctgttgcgg ccggacactt cgcggtcgag atgcatccgt ggtggtcgga agacgtgatg
      781 aagaaaacga cgacaccgca aaagatgatg acggcttatc tcgcgtttct cgttcgcggc
      841 gacaaatgga cgcccgaaag gactccgcaa acggcagcaa ttcaaaaagc acatttggaa
      901 aacatcggta aactcgccga gatgaaaaag ctcgtcgtcg cgggaccgtt tggtgacaac
      961 ggcacgctgc gcggcatctt cgtatttcgc gtgaactcga tcgacgaagc gcgcgagctt
     1021 tcggcgaccg atccggcggt gcaagcggga cgtttggcgt tgcagattca tccgtggatc
     1081 gtgcctgaag gaatactgcc gtgatgatcc ggaatcagat cggtccggaa accggcgcgc
     1141 aagcgatctc gctgcggata ctcgagtttg agccgggttt gtcgcccgta ttgcggaacg
     1201 acgacctcga cgaagtcctt ttcgctttgg acgagtgcaa gatttttatc gacgatcgtg
     1261 ctcacgccgt agaaccccaa tccggtattt tcatccccgc ccaaaaggcc tttcgtgttg
     1321 aaaaccctgg accagagccg gtttctttcg tgagttcgtt agctccgcgt cagcagggtg
     1381 ggataaacac gtcgattgta cggcttgcgg atcaacgggc aatgccgacc gcggatcggt
     1441 ggtaccgagt tttgatcgat tcggaagtga cgcagtttgt cggctcgatt ccacccggcc
     1501 gcgcgcccga ccacttccat gaatatgaag aagtgttgtt tatcttgaag ggcgaagggc
     1561 gagtgtggct cggcggggat tccaaaccga ttggttacgg atcttgtatc tacttaccgc
     1621 gacgacaagt gcattgtgtt gagaatacag gtacgggtga gttgcgtttg ctcggtgtgt
     1681 tctatccggc gggcagtccc gcggtgaggt acgaaacgtc tactcaaaat ccctgatgtc
     1741 gcggaacggg cgctcggcgt cgtcgaagtc ggggcggtag taataggacg cgccgtcgaa
     1801 ttcctggacc cagccttctt ccatgccgag ctcttcgagc gcggaggtcg ctttcatcca
     1861 ttccgattcg cggatgcgcc gcgagagtag gacgtagcgc ttgttcgtct cagcctggtg
     1921 tgtcgggtag tattgggcca tcagcgagat cgccacgcgc gggctcagct catctctgat
     1981 ccactcgatc gattcacgca cgctgccgac gtcgtttggt agcaccagca gcctgatcac
     2041 caacccgcgt cgcaacagtc cgttctgatc gtagacaagc tcgtcgcccg tctggcgaaa
     2101 catctctttc aacgccaacc gcgaaaactc tttgtaacca ctgacttttg aatacacata
     2161 acccgactcg tcatccgcgt acttcaaatc cggcaagtac acatcaacca cacgatcgag
     2221 cagccgcaac accgaaaccg cgtcgtacgc attcgtgttg taaacgatcg gcacgttcag
     2281 cccctgctgc gccgcgagca gaatcgatcg cgccatctgc ggcgcgaagt gcgtcggcga
     2341 aacgaagttg acgttgtgac aaccacgccc ttgcaactcc agcatcatct ccgcgagtcg
     2401 ctcgtgcgtg acttcattct tgagctgctg cttgtgtgtt tgcgagatct gataattctg
     2461 gcaatagacg cagcgcagat tgcagttgcc gaagaagatg ttgcccgcgc cgcgcttgcc
     2521 gacgagcggc ggctcttcgc cgaagtgcgc cgtgtacgac gagacgatcg gcaagcggcc
     2581 cgagtaacac gcagcgatgt cgttattgag ccggttgttc agacagtcgc gcggacaaac
     2641 cgtgcagctc tcgagcaact tttccagagc ttctacgcgc tgctgcaact caccggtcga
     2701 cagcaagccg agatacgaag ccggaaataa attcaacgac tcactcatga cgtctgaaat
     2761 gcacaaagtg cggtttgtgt tgctcgacga tctccgccgg ggtcgcacgt ttcgactgcc
     2821 gccagataaa atccatctcc gtgtgtatcg tgctcaac
//
LOCUS       DASWTX010000844         1567 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_363472, whole genome shotgun sequence.
ACCESSION   DASWTX010000844 DASWTX010000000
VERSION     DASWTX010000844.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1567
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363472"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            98..>1567
                     /locus_tag="VGD38_12760"
     CDS             98..>1567
                     /locus_tag="VGD38_12760"
                     /inference="COORDINATES: protein motif:HMM:NF015851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEY0728938.1"
                     /translation="MTESPAPVQWAKVIDHTRCIGCHACTTACKSENVVPISVTRTYV
                     KHVDVGVFPQARRAHQVTRCNQCAHAPCVTACPTAAMFKRADGIVDFDKSICIGCKAC
                     MAACPYDAIFINPEDHSAEKCNFCAHRIDIGLEPACVVVCPTQAILVGDMNDSDSYVA
                     QIVNRESVAVRRPEKETLPKLFYKGAHQATLDPLAARRPDGGLFMWSEQQETSGTVVS
                     GNPNYNNSSAAALLSYDVAHSIPWDWRVSLYTWTKGIASGVYLLAALLVLFGVIAPFD
                     PMWLWATPVISGAFLALTGGLLLWDLEHPERFYLIFTRPQWRSWLTKGAFIIAAYTLV
                     LMLHFFASWAGARAFQSWLMIAGIPLSILTAVYTAYLFAQAKARDMWQNPLLPPHLLV
                     QALLLGSAALILTLAAFGDWLRPPGELLYYISPRGLEMPDLLWFLAVTSLIHLLMVWG
                     EVSLTHPTAHARLAIHEMTRGRFRNDFWFGTLLSFLGGLP"
BASE COUNT          268 a          428 c          497 g          374 t
ORIGIN      
        1 gctgaactca gaacgtaatt tgtgacggcg cgcgggattt gtcaatctcc acgccgggaa
       61 atgttatagt ctggctccca aacgctggag cttgtctatg acggagtcgc cggccccggt
      121 tcagtgggcc aaggtaatcg atcacacgcg ctgcatcggc tgtcatgcgt gcacgaccgc
      181 gtgcaagtcg gaaaatgtgg ttccgatttc tgttacgcgc acgtacgtga agcacgtcga
      241 cgtcggcgtg tttccgcagg cgcggcgcgc gcatcaggtg acgcgttgta accagtgcgc
      301 gcacgctccg tgtgttactg catgcccgac ggcggcgatg ttcaaacgtg ccgacggcat
      361 cgtcgatttt gataagtcga tctgcatcgg ttgcaaagcg tgtatggcgg cgtgtccgta
      421 cgacgcgatt ttcatcaacc cggaagacca ttcggcggag aagtgcaact tctgcgcgca
      481 ccggatcgat atcggactcg aaccggcgtg cgtggttgtg tgtccgacgc aggcgattct
      541 cgtcggcgac atgaacgatt cggattcgta cgtcgcgcag attgttaatc gcgaaagcgt
      601 ggcggtgcgg cggccggaaa aagagacgtt gccgaagctg ttttacaaag gcgcgcacca
      661 ggcgacgctc gatccgctcg cggcgcggcg tcccgacggc gggttgttca tgtggagcga
      721 gcaacaggaa acgtcgggaa cggtcgtgtc cggcaatccg aattacaaca actcttccgc
      781 ggcggcattg ctgtcgtacg acgtagcgca ctcgattccg tgggattggc gcgtgagttt
      841 gtacacgtgg acgaaaggca tcgcttcggg tgtttatttg ctggcggcgt tgctggtgtt
      901 gtttggtgtg attgcgcctt tcgacccgat gtggttgtgg gcgacgccgg tgatttcagg
      961 cgcgtttttg gcgctcactg gcgggttgtt gctttgggat ctcgaacatc cggagcggtt
     1021 ctatttgatt ttcacgcggc cgcaatggcg cagttggctt acgaagggcg cgttcatcat
     1081 cgcggcgtac acgctggtgt tgatgctgca tttctttgcg agctgggccg gcgcaagggc
     1141 gtttcagagc tggctgatga tcgcgggcat accactctcg atactgacag ccgtttacac
     1201 ggcctatctt ttcgcgcagg cgaaggcgcg cgacatgtgg caaaacccgc tgttgccgcc
     1261 gcacttgctg gtgcaggcgc ttttgttggg ttcggctgcg cttatattga cgcttgccgc
     1321 attcggagat tggttgagac ctcccggcga actcctctac tacatctcgc cccgcggcct
     1381 tgaaatgcct gacttgcttt ggttcctggc ggtcacgagc ttgatacatc ttctgatggt
     1441 ctggggcgaa gtctcgctga cgcatccgac ggcacacgcg cggctcgcga ttcacgaaat
     1501 gacacgcggc cgttttcgca acgacttctg gttcgggact cttctctcat tcctcggcgg
     1561 cctaccc
//
LOCUS       DASWTX010000845         3092 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_100608, whole genome shotgun sequence.
ACCESSION   DASWTX010000845 DASWTX010000000
VERSION     DASWTX010000845.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3092
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100608"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..756
                     /gene="modA"
                     /locus_tag="VGD38_12765"
     CDS             <1..756
                     /gene="modA"
                     /locus_tag="VGD38_12765"
                     /inference="COORDINATES: protein motif:HMM:NF024921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_function: GO:0030973 - molybdate ion binding [Evidence
                     IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEY0728939.1"
                     /translation="TSLVILTLVTTLAFALACRRTTNQLPELTVAAASDLTQAFEELG
                     REFEAANKTKVVFVFGSTGMLTRQIENGAPMDLFAAANVDYVNQLEQQGLIIPGTKAL
                     YARGRITMWTTADSPLNLQTITDLRRPEVKRIAIANPDHAPYGLAAQQAFQKAGMWDE
                     LKPKLVYGENIRQTLQYAETGNVDVAIVALSLSHQSKGRWVLIPEELHQPIDQGLAVI
                     KTTRNEPAARAFAAFITGPRGREILAKYGFAFP"
     gene            complement(701..3076)
                     /locus_tag="VGD38_12770"
     CDS             complement(701..3076)
                     /locus_tag="VGD38_12770"
                     /inference="COORDINATES: protein motif:HMM:NF015714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEY0728940.1"
                     /translation="MRQFVGRQVVVTGVLVGPPEVGRDRMYLTLSVERLDVDGFSRSS
                     AGVVSLLAPFRDESSEQEYRKLQLRYGARVRVVTSFGRVDNYRNPGVSALSEYLDRKG
                     YDATGVIKSPGAIARIEDTARFSLPALLYSWREALQNEIHAKFDEETAGVLDAALLGN
                     RYNLSRETAERFREGGTFHVLVISGMHISLIGGVVLLAVRRLTTRRVVQFVVPAVVVW
                     GYSLAVGAEASVVRAALMFTFAGLGPVLFRESTSLNGLGAAALVLLVNSPKEIFDPSF
                     QLTFLSVLAIVVVAWPLLQACSAIGGWYLTRETPGPPACPRQVRWFCELLFWSERKWK
                     KEIARSPHRYRLFKTPLAAALERYRVQACLRYVFAAMVVSGAVQLLLLPLMIVYFHRI
                     SPASLVLNIVVGLLLAALSAVAFVALLLSQLTPTLAAPFIKLANLLDWLMVHSVDPFT
                     HYHVASIPLPEYAGAGALVYVLYYVPLLILLASRARWRLLALAQLALVAVLILHPFSA
                     VADGKLRVDFLDVGQGDSALVTLPDGRTLLVDGGGTTDLHRGNADRRSIGEAVVSEYL
                     WWRGLDTVDYVLPTHADADHIDGLNDVLRNFTVNAALVARSPANDSEYAKFAQSLAAT
                     NTHVATIQAGDVIRFGGVQIEVLWPPAATYANEPSRNNDSIVLKLGFAKHSILLTGDI
                     EKSGERALIAAGRELRADVVKVPHHGSRSSSTLPFVTATGAKLAIVSVGQNSMFGHPH
                     AEVVERWEANGAQVFTTGKCGTITVTTDGTTLTLTGMQSHTSQGSPCRAGL"
BASE COUNT          760 a         1006 c          767 g          559 t
ORIGIN      
        1 acttcgctgg ttatcctcac actggtgaca acgctcgctt tcgcgttggc gtgtcgccgc
       61 acaacaaatc aacttccgga gctcaccgtc gcggctgctt ccgatctgac tcaagctttt
      121 gaagagctcg gacgcgaatt cgaagcggcc aacaaaacca aagtcgtatt cgtgtttggc
      181 tcgacaggaa tgttgacgcg tcagatcgaa aacggcgcgc cgatggatct cttcgccgca
      241 gcgaatgtcg attacgtcaa ccaactcgaa cagcagggcc tcatcatccc cggcaccaaa
      301 gcgctctacg cgcgcgggcg tatcacgatg tggaccaccg ccgacagccc gctgaatctc
      361 caaaccatca ccgacctcag acggcccgaa gtcaaacgca tcgcgatcgc caatcccgat
      421 cacgcgccgt acggactcgc cgcgcagcaa gcgtttcaga aggcgggcat gtgggacgaa
      481 ctaaaaccaa aactggttta cggcgagaac atccggcaga cgcttcaata tgcggagact
      541 ggcaacgtgg acgtggcgat cgtggcgttg tcgttgagcc accaaagcaa agggcgttgg
      601 gtgttgattc cggaagaact gcaccagccg attgatcagg gtttggcggt catcaagacc
      661 acgcgcaacg aaccggcggc gcgcgcgttt gcggccttca ttacaggccc gcgcggcagg
      721 gagatccttg cgaagtatgg ctttgcattc ccgtaagcgt tagcgtagtt ccatccgtgg
      781 tcacggtgat cgttccgcac tttccggttg tgaacacctg cgcgccgttc gcctcccaac
      841 gctcgaccac ctccgcgtgc ggatgaccaa acatcgaatt ctgtccgact gaaacgatcg
      901 caagcttcgc cccggtcgct gtgacaaacg gcagtgtcga agaacttcga ctaccatgat
      961 gcgggacttt cacaacatct gctcttaatt ctcttccggc tgcgataagc gccctctcgc
     1021 cgctcttttc gatatcgccg gttaataata ttgagtgttt cgcaaatccc agcttcaaaa
     1081 cgatcgaatc gttgttgcgc gatggttcgt ttgcgtatgt agccgccggt ggccacagca
     1141 cttcaatttg aacgccgccg aagcgaatca catccccggc ttgaatcgtg gccacgtgcg
     1201 tgttggtcgc ggcaaggctc tgcgcaaact tcgcgtactc cgagtcgttt gcaggcgagc
     1261 gcgcaacgag agccgcgttc accgtgaagt tccgcagcac gtcgttcaaa ccgtcgatgt
     1321 gatccgcgtc ggcgtgcgta ggcaagacgt aatcgactgt atcgagcccg cgccaccaca
     1381 agtattctga aacaaccgcc tcaccaatgc tgcgtcgatc cgcgttccct ctgtgtaaat
     1441 ctgtggtccc cccgccgtcg accagaagcg ttctcccatc aggcagcgtc accaacgccg
     1501 aatcgccctg acccacgtcg agaaagtcga ctcttagttt tccatcagct accgcactaa
     1561 acggatgaag gatcaaaaca gcgaccagcg cgagctgcgc cagagcgagt aagcgccaac
     1621 gtgctcgcga cgccaggagg atcagtaacg gaacgtagta cagcacgtac acaagagcgc
     1681 ccgcacctgc gtattcaggg agagggattg aagccacatg atagtgcgtg aagggatcga
     1741 cgctatggac catcaaccag tcgagtaggt tggcgagttt gatgaagggc gccgcgagcg
     1801 tgggtgttag ctgggagagt aagagcgcaa cgaaggcaac cgctgacaac gcggcgagta
     1861 atagtccaac tacgatgttc aggaccagcg acgccggtga gatacggtgg aagtaaacaa
     1921 tcatcagcgg caacaacagc aattgcaccg cgcccgacac gaccatcgcc gcaaagacgt
     1981 atcgcaagca cgcctgaaca cggtatcgtt cgagcgcagc tgcaagcggt gttttgaaga
     2041 gccgataacg atgcggcgaa cgtgcgatct ccttcttcca cttgcgttca ctccaaaaca
     2101 gcaactcgca aaaccaccta acctgccgcg gacacgcggg cggcccgggc gtctcgcgtg
     2161 tcagatacca gccaccgatt gcgctgcacg cctgcaacag cggccacgca accaccacaa
     2221 tcgccagcac cgaaagaaac gtcagttgaa acgacggatc gaagatctct ttcggactgt
     2281 tgaccaacaa aaccaacgcc gcggcgccaa gaccattcaa tgaagtcgac tcgcgaaata
     2341 acaccggccc caaccccgca aacgtaaaca ttagcgccgc ccgaaccacg gacgcctcgg
     2401 ccccaacggc caacgagtaa ccccacacaa caactgccgg tacgacaaac tgaactaccc
     2461 ttcgcgtcgt caaacgccgc actgcgagca acaccacacc accgatcaaa ctgatgtgca
     2521 tcccactaat cacgagcaca tgaaacgtgc cgccttcacg aaacctctcc gccgtctcac
     2581 gcgaaaggtt atagcgattc cccaacaacg ccgcatcgag cacacccgct gtttcctcgt
     2641 caaacttcgc gtgaatctcg ttctgcaacg cttcgcgcca cgaataaagc aaagccggca
     2701 acgaaaacct cgccgtatct tcaatccgcg cgatcgctcc cggactcttg atcacgcccg
     2761 tcgcgtcgta acccttgcga tcgagatact ccgacagcgc cgacacaccc ggattccgat
     2821 agttatcaac acgcccaaaa ctcgtcacaa cacgaacccg cgcgccatac cgcaactgca
     2881 acttgcgata ctcctgctcg ctgctttcgt ctctaaacgg cgccagcaac gacacaaccc
     2941 cagcactgct cctcgaaaat ccatcaacat ccaagcgttc cacactaagc gtgagataca
     3001 tccgatccct gccaacctcc ggtggcccaa ccaagacccc agtaacaaca acttgcctcc
     3061 caacaaactg cctcaactca ctctcacctc tc
//
LOCUS       DASWTX010000846         2342 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_205140, whole genome shotgun sequence.
ACCESSION   DASWTX010000846 DASWTX010000000
VERSION     DASWTX010000846.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2342
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205140"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..520
                     /locus_tag="VGD38_12775"
     CDS             <1..520
                     /locus_tag="VGD38_12775"
                     /inference="COORDINATES: protein motif:HMM:NF014788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AIR synthase-related protein"
                     /protein_id="HEY0728941.1"
                     /translation="KAIEPGDVLLALPSVGLHTNGYSLARKLFFEVAGYEPQTHVPEL
                     GMTAGEALLQPHVSYLRPLNSLLDREVIKGLAHITGGGLTDNIPRILPEGTAVQIVPG
                     SWPVLPIFELFRRHGNVSDFEMFRTFNMGVGMVIVCSPSNATIIKAHFEAFGDAYYEI
                     GKVIPGAGEVLL"
     gene            538..1104
                     /gene="purN"
                     /locus_tag="VGD38_12780"
     CDS             538..1104
                     /gene="purN"
                     /locus_tag="VGD38_12780"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF012760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEY0728942.1"
                     /translation="MAVLISGRGSNMLALHDAIRAGKIPNAQIVVVISDKADAPGLAL
                     AAERGIEAIAVERKGRKREEHEGEIVAALGEREIDLICLAGYMRLLSPCFIEAFRGRI
                     LNIHPSLLPSFPGLDAQRQALEHGVKFTGCTVHFVDETLDGGPIIAQRVVPVLEGDTV
                     ESLSARILEQEHQLYAEAVAQVLQDDLR"
     gene            complement(1086..1991)
                     /gene="proC"
                     /locus_tag="VGD38_12785"
     CDS             complement(1086..1991)
                     /gene="proC"
                     /locus_tag="VGD38_12785"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004735 - pyrroline-5-carboxylate
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEY0728943.1"
                     /translation="MVTETATSSVRDSASALEDCRLAFIGCGAMAEAMIAGLLRKKLI
                     SPANVVGSHPRLARREELHVKYGIEMFEHNRDATVAAAPDATSNGHTGSMVILAVKPQ
                     RLAKVLGELNGSIHPDQLVVSIIAGAKMQTITDGLLHAAVVRTMPNTPAQIGEGVTAW
                     TASPAVSEKQETQVRALLEALGKAVHVENERQIDMATALSATGPTYIFLVMEALIDAG
                     VHMGFSRHVAEELVHQAMLGSVLFARESHKHPAELRNMVTSPGGTSAEAIYQMEKGSL
                     RTVLSKAVWAAFQRAESLGNQRKSS"
     gene            2084..>2342
                     /locus_tag="VGD38_12790"
     CDS             2084..>2342
                     /locus_tag="VGD38_12790"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF012788.4"
                     /note="catalyzes the formation of tyrosyl-tRNA(Tyr) from
                     tyrosine and tRNA(Tyr); Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEY0728944.1"
                     /translation="MTIDEQLSYLAKGTTEIIREAELREKLEKSAKTGKPLRVKLGAD
                     PTAPDIHLGHTVVIRKLKAFQDLGHTVIFLIGDFTGMIGDPS"
BASE COUNT          473 a          669 c          696 g          504 t
ORIGIN      
        1 aaaagcgatc gagccgggcg atgttttgct cgcgttgcct tccgtcggtt tgcacacgaa
       61 tggttactcg cttgcgcgca agcttttctt tgaagtcgcg ggttacgaac cgcagacgca
      121 tgtgccggaa ctcggcatga cggcgggcga agcgctgttg caaccgcacg tcagttatct
      181 gcgtccgttg aattcgttgc tggatcgtga agtgatcaaa ggcctggccc acatcacggg
      241 cggcgggctc accgacaaca ttccgcgcat tctgccggaa ggaacggcgg tgcagatcgt
      301 tccgggctca tggcccgtgt tgccgatttt tgaactgttt agacgccacg gaaatgtttc
      361 ggacttcgag atgtttcgca cgttcaatat gggcgtcggc atggtgatcg tctgttcgcc
      421 gagtaacgca acgatcatca aggcgcattt cgaagcgttc ggcgacgcgt actacgagat
      481 cggcaaagta attccaggtg caggcgaggt gctgctctga cagattcgct aaagagactg
      541 gcggttctca tctccggtcg tggctcaaac atgctcgcgc ttcacgacgc gattcgcgcc
      601 ggaaagatcc cgaacgcaca gatcgttgtt gtaatcagtg acaaggctga tgcgcctgga
      661 cttgcgctag cggcagagcg cggaattgaa gcgatcgctg ttgagcggaa agggcgcaag
      721 cgtgaggaac acgagggtga aattgttgcc gctttgggag agcgcgaaat cgatctaatt
      781 tgtctcgctg gttacatgcg gttgttgtcg ccgtgcttca ttgaggcgtt tcgcgggcgc
      841 attctcaata ttcatccgag cctgctgcct tcgtttcccg gactggacgc gcagcggcag
      901 gcgctcgagc acggcgtgaa gttcaccgga tgcacggttc actttgttga cgagacactc
      961 gacggcgggc cgatcattgc acagcgtgtt gttccggttt tggaaggtga tacggtcgag
     1021 agtctttcag cgcgaattct cgaacaggaa catcagctct acgccgaagc cgtggcgcaa
     1081 gtgcttcagg acgatttgcg ctgattgccc aacgactcag cacgttgaaa cgcagcccac
     1141 actgctttcg acaacacggt tcgcaaacta cccttctcca tttgatagat cgcttccgct
     1201 gatgtgcctc ccggcgacgt gaccatgttg cgcaactccg ccggatgctt gtgcgactcg
     1261 cgcgcgaaca aaaccgaacc gagcatcgcc tgatggacca gttcctcggc gacgtggcgt
     1321 gagaaaccca tgtgtacgcc cgcgtcgatc agcgcttcca tgacgaggaa gatgtaggtt
     1381 ggaccagtgg cgctcaacgc cgtggccatg tcgatctggc gttcgttctc gacgtgaacg
     1441 gctttgccga gcgcttcgag cagcgcgcgg acttgcgtct cctgtttctc actgacagcg
     1501 ggactcgcgg tccatgccgt aacgccttcg ccgatctgcg cgggcgtgtt tggcatcgta
     1561 cgtacgacgg cggcgtgcag cagtccatcc gtaatggttt gcatcttcgc gccggcaatg
     1621 atcgaaacga cgagctggtc cgggtgaatc gagccgttca gttctcccaa caccttcgcg
     1681 aggcgctgcg gcttcacggc gagaatcacc atcgaaccgg tgtgcccatt ggatgttgca
     1741 tcgggcgcgg cggcgaccgt cgcatcgcgg ttgtgctcaa acatctcgat gccgtatttg
     1801 acgtgcaact cctcgcggcg cgccaagcgc ggatgactcc cgaccacgtt tgcaggactg
     1861 atgagtttct tgcgtagcag gccagcgatc atcgcctcgg ccatcgcgcc acagccgatg
     1921 aacgcaaggc ggcagtcttc cagcgcgctc gccgaatcgc gaactgagct cgttgctgtc
     1981 tccgtaacca taaaactgag gatagcgcac cgccgaacag atcagctact ctatcgcgcg
     2041 gggagatcga tgcgaggtgg ttatgcaggc ccacggaact ttaatgacaa tcgacgaaca
     2101 actctcatac ctcgccaaag ggaccaccga aatcattcgc gaagctgagc tgcgcgagaa
     2161 gctggagaag tcggcgaaaa caggcaagcc gctgcgcgtg aaactcggcg ctgatccgac
     2221 cgcgcccgac attcatctcg gccacaccgt cgtcattcga aagttgaaag cgtttcagga
     2281 tctcggacac accgtgatct tcttgatcgg tgacttcacc ggaatgatcg gcgatccgtc
     2341 tg
//
LOCUS       DASWTX010000847         6692 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_165411, whole genome shotgun sequence.
ACCESSION   DASWTX010000847 DASWTX010000000
VERSION     DASWTX010000847.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6692
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165411"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..679
                     /locus_tag="VGD38_12795"
     CDS             <1..679
                     /locus_tag="VGD38_12795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728945.1"
                     /translation="KNKDLLYVGTEFGLYISLNGGAEWKPFMSGMPVMRIDDIVIHPR
                     DNDLIVGTHGRGIFILDDITPLQQLSQKVMDSEAHLFEVRPGTIWMNDPRLGRYWGGA
                     KLFRGANPAPGTAISYYLKSAPSGDVKIAISDYTGKVVRNITGTKEVGLNRVQWNLRG
                     DPPPRPTGAGGGFGGGGGGGGGGGGFGNIFTQGLPLEAGTYNLKLTVNGKDYTTKVVL
                     EPDPGFN"
     gene            complement(672..1838)
                     /locus_tag="VGD38_12800"
     CDS             complement(672..1838)
                     /locus_tag="VGD38_12800"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF022137.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
                     /protein_id="HEY0728946.1"
                     /translation="MIVRVNRRGAERVRHGHLWIYRSDLVDVDTEGGSVVSVKDERGN
                     FIGQALYSGASQIALRFLTQTNEEIDREWWRRRILDAASRRHIPTDTNAYRLVNSEGD
                     LLPSLIVDRYNDVLVLQTLSQGTESLKSTFTEILIEEFQPRAVIERNDARVRELEGLP
                     LIATTVYGEAPDEFEILQHGLRFVVSPGAGQKTGSFLDQRENRLAARAAAKTTNHGRA
                     LDCFTFNGAFALHLASVCEEVIGIDISADAVSAAKHNAELNQLTNVEFREANVFDALR
                     EFETRGERFDVIVLDPPAFAKNRASLKSALRGYKEINLRALKLLNPGGVLITCTCSYH
                     VSEDLFLEIVDQAAIDAHRRLQVIEKRMQASDHPVLLGMPETYYLKCVICRVSS"
     gene            1888..3498
                     /locus_tag="VGD38_12805"
     CDS             1888..3498
                     /locus_tag="VGD38_12805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HEY0728947.1"
                     /translation="MATKTKDERRERFETPSGIALPVDFNPENTGPVDYEADLGAPGE
                     FPYTRGIYQNMYRGRLWTMRQYAGYATAEESNARYKYLLSQGTTGLSVAFDLPTQIGL
                     DSDDPLSLGEVGKVGVAIDSLEDMERLFEGIPLDEVSTSMTINATAAILLSLYLAVAR
                     KQNVSFDKVRGTIQNDILKEYIARGTYIYPPQPSLRLVTDTFAFCAREVPNWNTISIS
                     GYHIREAGSTAVQEVAFTLADGITYVEAALAAGLAVDDFAPRISFFFNAHNNLLEEIA
                     KFRAARRLWARIMRERFGARDPRSLMLRFHTQTAGSSLTAQQPDVNVVRTTIQALAAV
                     LGGTQSLHTNSMDEALSLPTEAAARVALRTQQVIAYESGIADTADPLAGSYAIEELTE
                     QVEKLAREYLEKIDAMGGMLRAIEIGYVQREIQESAYRYQRAIESKEEIVVGVNRFQI
                     DDDVSMPLLKIDEQLECAQVERVRALRARRDAHATESALNKLEETAKTTENLLPRILE
                     CVESYATVGEISNRLRRVWGEYRETSTI"
     gene            3499..4428
                     /locus_tag="VGD38_12810"
     CDS             3499..4428
                     /locus_tag="VGD38_12810"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEY0728948.1"
                     /translation="MDRRSFVKVVGLSALAAGFGGVPALARKPAPQFSITMDDFFWQN
                     ALKLSGAQRNQAILEALSKHRTKAALFVIGKNIEEDEGKHLLTAWDRAGHLIANHTYS
                     HRNLNAADADVKAYQDDILRAEVLLKDFPRFRKYLRFPFLKEGDTVAKRDAIRAFLAQ
                     HNYRNGHVTIDASDWYVEQRMTARLESDPATNLKPYRDFYLEHMWERARYYDKLSQRV
                     LGYQPKHTVLVHFNLLNALFLDDLIAMFKAKGWQPVDAEEAFTDPVFASKPNVIPAGE
                     SLIWSLAKEKGTPLRYPGEDSKYEAERMKKLGL"
     gene            4425..5300
                     /locus_tag="VGD38_12815"
     CDS             4425..5300
                     /locus_tag="VGD38_12815"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEY0728949.1"
                     /translation="MKTKLPLLACLLGLLASIANAQTQNTRPQNAPTETVTWLRYTVK
                     GEEFSVTLPVEPSMKTSDVFVMRLKKSRLERVIQAKAGEVVYKVFVYENPKPRQSLKE
                     FIAEQTARSDLDLTFERDLKVGKFDGQQYSSHDRDFPSTEQYFATEGRLYRFVVSGAT
                     AAHAGAQPFFSSVALGKKQEGIEVLEGGMTTGATQTIFLGREVDTKARLLSKPEPSYT
                     DKAKSNQVVGTVILKAVFSASGKVTNIRVVQGLPDGLTERAIAAARLIKFIPATREGK
                     FVSMWMQLEYNFNLY"
     gene            5303..6193
                     /locus_tag="VGD38_12820"
     CDS             5303..6193
                     /locus_tag="VGD38_12820"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEY0728950.1"
                     /translation="MKTKLTLTTCILILFAGVVNAQLPEAPRAVSWQQYKVGGERFSV
                     SMPLLPAMHIGHKWYEGDKKPRREVLLGSYADGVAYTVYVAENRSPQQSLEGFVAERL
                     GSSNWVNPNSQRTVTCDGLSGKAYVSAEPGDGMVQYFDGGDRLYEFHAFGASHEDPRV
                     TKFFSSVSFDKKKIAHEVYEGVGHPFQPAPPASADGELTPRIFTGKDVTRKARLAMKP
                     EPSYTEDARKNGIQGTVVLKCVFSSNGNVTNIRTFSGLPHGLTEKAIEAASRIKFIPA
                     VKEGRHVSMWMQLEYNFNLY"
     gene            6193..>6692
                     /locus_tag="VGD38_12825"
     CDS             6193..>6692
                     /locus_tag="VGD38_12825"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0728951.1"
                     /translation="MSHLLEVNDLRTHFPTRGGLVRAVEGVSFYLDRGELLGLVGESG
                     CGKSMTALSVMRLIAPPGKIVSGEILFDGKDLMRLSDAEMRQMRGDDIAMIFQDPMTS
                     LNPVYTVGEQIAEALRLHRKMSRKEARQATIEAMREVAIPDPARRINDYPHQLSGGMR
                     QRVMIA"
BASE COUNT         1477 a         1930 c         1954 g         1331 t
ORIGIN      
        1 gaagaacaag gatctgctgt atgtcggcac cgagtttggc ttgtacatct cgctgaacgg
       61 cggcgctgag tggaagccgt tcatgtcggg catgccggtg atgcgcatcg acgacattgt
      121 gatccatcca cgcgacaacg atctcatcgt cggcacgcac gggcgcggca tattcatcct
      181 cgacgacatc acgccgttgc agcagttgtc gcagaaggtg atggactcgg aggcgcacct
      241 gttcgaagtc agacccggaa cgatctggat gaacgatccg cgtctcgggc gttactgggg
      301 cggtgcgaaa ctcttccgcg gcgcgaatcc cgcacccggc acggcgatca gttattactt
      361 gaaatccgcg ccatcaggcg acgtgaagat cgcgatctcc gactacaccg gcaaggtcgt
      421 gcgcaacatc accggcacga aggaagttgg tttgaaccga gtgcagtgga acctgcgcgg
      481 cgatccgcct ccgcgtccga ctggcgccgg cggtggcttt ggcggtggtg gtggaggcgg
      541 cggcggtggc ggcggcttcg gcaacatctt tacccagggc ttgccgctcg aagccggcac
      601 ttacaatctg aagctgacgg tcaacggtaa ggactacacg acgaaagtcg tgcttgaacc
      661 tgatccgggg ttcaactaga gacgcgacag atcacgcatt tcaaatagta ggtctcgggc
      721 atcccaagca acacgggatg atccgaggcc tgcatgcgtt tttcgatgac ctgcaggcgg
      781 cggtgcgcgt cgatcgccgc ctggtccaca atctccaaga acagatcttc cgaaacgtga
      841 tacgagcacg tgcaagtgat cagcacgccg ccgggattca gcagcttcaa cgcgcgcagg
      901 ttgatctctt tgtaaccacg taaagctgac ttcagactcg cgcgattctt cgcaaaggcc
      961 ggcgggtcca gcacgatcac gtcgaaacgc tcgccgcgtg tttcgaattc tcgcagcgcg
     1021 tcgaaaacgt tcgcttcgcg aaattcgaca tttgttagct ggttgagctc agcgttgtgt
     1081 tttgcggcgc tgacagcgtc cgcggaaata tcgatcccga tcacttcttc gcaaacgctc
     1141 gcgagatgca acgcaaacgc gccgttgaac gtgaagcagt cgagcgcgcg tccgtgatta
     1201 gtggttttcg cggcggcgcg tgcggcgaga cggttctcgc gttggtccag aaacgatccg
     1261 gtcttttgtc ccgcgcccgg cgaaacaacg aaacgcaatc cgtgttgcag gatttcaaac
     1321 tcgtccggcg cctcgccgta aaccgtcgta gctatcaagg gcaatccttc aagctcgcgc
     1381 actcgcgcat cgttgcgctc gatcaccgcg cgaggctgaa actcttcaat cagtatctcg
     1441 gtgaacgtcg atttcagcga ttcagtgccc tgcgacaacg tttgcagcac gagcacgtcg
     1501 ttgtaacgat cgacgatcaa cgacggcagc aagtcgcctt cggaattcac cagccggtac
     1561 gcgttcgtat ccgtgggaat gtggcgtcgt gaagcggcgt caagaatccg gcggcgccac
     1621 cattcacgat cgatctcctc gtttgtctgc gtcaaaaacc gtaacgcgat ctgcgacgcg
     1681 ccgctgtaca aagcctggcc aatgaaattc ccgcgttcgt ctttaacgct gacgaccgat
     1741 ccgccttccg tgtcgacgtc gaccaggtcg ctgcggtaga tccacaaatg cccatgcctg
     1801 acgcgttccg cgccgcgtct gtttacccgc actatcattg gcactactgt gccactaatg
     1861 ttaggcttcg ctcaacctcg atcgatcatg gccacgaaaa caaaagacga gcggcgagag
     1921 cggtttgaga cgccatcggg tatcgcgctt cctgtcgatt tcaaccccga aaacaccggc
     1981 cccgtagact acgaagcaga cctcggcgcg ccgggcgaat tcccctacac gcgcggcatt
     2041 taccagaaca tgtaccgcgg gcgcctctgg accatgcgcc aatacgcggg ctatgcgacc
     2101 gccgaagagt cgaacgcgcg ctacaagtat ctgctgtcgc agggcacgac cggactctct
     2161 gtcgccttcg atctgccgac gcaaatcggc ctcgactctg acgatccgct ctcgctcggc
     2221 gaggtcggca aagtcggcgt ggcgatcgac tcgctcgaag acatggaacg cctctttgaa
     2281 ggcattccgc tcgacgaagt ctcgacgtcg atgaccatca acgcgaccgc cgcgatcctg
     2341 ctctcgctgt atctcgcggt cgcgcgcaag cagaacgtct cgtttgacaa agtcagaggc
     2401 acgatccaga acgacattct caaggaatac atcgcgcgcg gcacctacat ctatccgccg
     2461 cagccgtcgc tgcgtttggt gaccgacacg tttgctttct gcgcgcgtga agtgccgaac
     2521 tggaacacga tctcgatcag cggttatcac attcgcgaag ccggttcgac ggcggtgcag
     2581 gaagtcgcgt tcacgcttgc ggatggaatc acgtacgtcg aagccgcgct cgcagcgggt
     2641 ctggcggttg acgacttcgc gccgcgtatt tcgttcttct tcaacgcgca caacaacctg
     2701 ctcgaggaga tcgcgaagtt tcgcgccgct cggcgtttgt gggcgcgtat catgcgcgag
     2761 cgattcggcg cgcgcgatcc gcgttcgctg atgcttcgtt tccacacgca gaccgcgggt
     2821 tcgtcgttga cggcgcaaca acccgacgtg aatgtcgtgc gcacgacgat tcaggcgctc
     2881 gccgctgtgt tgggtggaac gcagtcgttg catacaaact cgatggacga agcgttgtcg
     2941 ttgccgaccg aagcggccgc gcgcgtggcg ttgcgaacgc agcaggtgat tgcctacgag
     3001 tcgggaatag cggacacggc cgatccgctc gcgggttcgt acgcgattga agagttaacg
     3061 gaacaagtcg agaaactcgc gcgtgagtac ctcgaaaaga tcgacgcgat gggcggaatg
     3121 ctgcgcgcga tcgagatcgg ttacgtgcag cgcgagattc aggaatcggc gtatcgttac
     3181 cagcgcgcga tcgagtcgaa ggaagagatc gtggttggtg tgaatcgttt tcagatcgac
     3241 gacgacgtgt caatgccgtt gttgaagatc gacgaacaac tcgaatgcgc gcaggtcgaa
     3301 cgcgtgcgtg cgctgcgtgc gcgccgcgac gcccacgcga ctgagtcggc gctaaacaag
     3361 ctcgaagaaa ctgcaaagac gaccgagaac ttgctgccgc gaatacttga atgcgtcgag
     3421 tcgtacgcga cagtcggcga gatcagcaat cgcctccgcc gcgtctgggg cgagtaccgc
     3481 gaaacctcaa cgatctaaat ggaccgaaga agcttcgtga aagttgtagg attgagtgcg
     3541 ttagccgcgg gcttcggcgg ggtacccgcg ctcgcgcgca aaccggcgcc gcagttttcc
     3601 atcacgatgg acgacttctt ctggcagaac gcattgaagc tgtccggagc gcagcgcaac
     3661 caggcgattc tcgaagcact cagcaaacat agaaccaaag ccgcgctgtt cgtcatcggg
     3721 aagaacatcg aggaagacga aggcaaacac cttctcaccg cgtgggatcg cgccggtcac
     3781 ctgatcgcga atcacaccta ctcgcatcgc aacctcaacg cggccgacgc agacgtgaag
     3841 gcttaccagg acgacatcct tcgcgccgaa gttttactga aagacttccc gcgcttccgc
     3901 aagtacctcc gctttccgtt tctgaaggaa ggcgacaccg tcgcaaagcg cgacgcgata
     3961 cgcgcctttc tggcgcaaca taactaccgc aacggtcacg tcacgatcga cgcttctgat
     4021 tggtacgtcg aacagcggat gaccgcccgt ctggaatccg atccggctac gaatctaaaa
     4081 ccgtatcgcg atttctatct cgaacacatg tgggagcgcg cgcggtacta cgacaagctc
     4141 tcacagcgcg tgctcggcta tcagccgaag cacaccgtgc tcgtgcattt caatctcctc
     4201 aacgcgctgt ttctcgacga cctcatcgcg atgttcaagg cgaaaggctg gcagcccgtc
     4261 gacgccgagg aggcattcac cgatccggtt tttgcatcta agccaaacgt catccccgcc
     4321 ggcgagagcc tcatctggtc actcgcaaaa gagaagggaa cgccgctgcg ctatcccggc
     4381 gaagatagta aatacgaagc cgagcgcatg aagaagttag gactatgaaa acaaaactcc
     4441 cactgctcgc gtgcctcctc ggtctgctcg cgagtatcgc taatgcccaa actcaaaaca
     4501 ctagacccca aaacgctccg actgaaaccg taacctggct gcgttacacc gtgaagggcg
     4561 aagagttttc cgtgacctta ccggtggaac cctcgatgaa gacctccgac gtgttcgtca
     4621 tgcggctgaa gaagagtcgt ctggaacgcg tgatccaggc gaaggccggc gaagtggtct
     4681 acaaagtttt cgtttacgag aacccgaaac cgcgccagtc gttgaaggag tttatcgccg
     4741 aacaaaccgc gcgatcggat ctggatctta ctttcgagcg cgatttgaag gttggtaagt
     4801 tcgacggtca gcagtattca tcgcacgacc gcgactttcc ttcgacagaa cagtattttg
     4861 ccaccgaagg acgcttgtac cggttcgtcg tgagcggcgc gaccgctgcg cacgcgggcg
     4921 cgcagccgtt cttctcgtca gtcgcgttgg gaaagaagca ggaaggcatc gaagtccttg
     4981 aaggcggaat gacgacgggc gccactcaaa caatattcct cggaagggaa gtcgacacga
     5041 aggcacgctt actcagcaag ccggagccca gttacactga caaagcgaaa agtaaccagg
     5101 tagtcggtac ggtaatcttg aaggccgttt tttcggcttc cggaaaggtc acgaacatcc
     5161 gcgtggtcca gggcctcccg gacgggttaa cggaaagggc catcgccgct gcgagactga
     5221 tcaaatttat tccggccacc agagaaggaa agttcgtctc gatgtggatg caactggagt
     5281 acaacttcaa cctctactaa tcatgaaaac aaaactcaca ctcacaacct gcattctgat
     5341 tctgttcgcc ggtgtggtta acgcacaact accggaggcc ccgcgagctg tttcctggca
     5401 gcaatacaag gtcggcggcg aacggttttc tgtttcaatg ccgctgctgc cggcaatgca
     5461 cataggccat aaatggtacg agggagacaa gaaacctcgc cgggaagtcc tgctgggatc
     5521 gtatgcggac ggcgtggcct acactgtcta cgtggccgaa aatcgcagcc cgcaacagtc
     5581 gctcgagggg tttgttgccg aacggctcgg ttccagtaac tgggtgaatc cgaacagcca
     5641 gcgtacagtc acctgcgatg gtctttccgg taaggcatac gtttctgctg agccaggtga
     5701 cggtatggtc cagtattttg acggcggtga caggctttat gagtttcatg cctttggtgc
     5761 gtcacacgaa gatccgcgtg tgacaaagtt cttctcatcc gtgtcgttcg acaagaaaaa
     5821 gatcgcgcat gaggtctacg agggggtggg acacccgttt caaccggccc cgccagcatc
     5881 agccgacggt gaattgaccc cgcgaatttt cacaggcaag gacgttacca ggaaagctcg
     5941 cctcgcgatg aaacccgaac cgagctatac ggaggacgcg cgcaagaacg gcattcaggg
     6001 aacagtcgtt ttgaagtgtg tttttagttc caacggtaac gtaaccaaca tcaggacctt
     6061 ttccggcctg ccgcacggtc tgaccgagaa ggcgatcgaa gccgccagcc ggatcaaatt
     6121 tattcccgcg gtgaaagagg gaaggcacgt ctcgatgtgg atgcaactcg agtacaactt
     6181 taatttgtat tgatgtcaca cttactcgaa gtcaacgatc tgcgaacaca ttttccgacg
     6241 cgcggggggt tggtgcgcgc ggtggagggg gttagttttt atctggaccg tggtgagttg
     6301 ctggggttgg ttggtgagtc gggttgtggg aagtcgatga cggcgctctc ggtcatgcgg
     6361 ctgatagcgc cgccgggaaa gatcgttagc ggggagatac ttttcgacgg caaagacctg
     6421 atgcgactgt ccgacgccga gatgcgccag atgcgcggcg acgatatcgc catgatcttt
     6481 caggatccga tgacgtcgct caatcccgtt tacactgtcg gcgaacagat cgccgaggcg
     6541 ctgcggctgc atcgcaagat gtcgcgcaaa gaggcgcggc aggcgacgat cgaagcgatg
     6601 cgtgaagtcg cgattcccga tcccgcgcgc cgcattaacg actatccaca ccagctctcg
     6661 ggcggtatgc ggcagcgcgt gatgatcgcg at
//
LOCUS       DASWTX010000848         3040 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_34369, whole genome shotgun sequence.
ACCESSION   DASWTX010000848 DASWTX010000000
VERSION     DASWTX010000848.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3040)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3040)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3040
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34369"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..567)
                     /locus_tag="VGD38_12830"
     CDS             complement(<1..567)
                     /locus_tag="VGD38_12830"
                     /inference="COORDINATES: protein motif:HMM:NF024915.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0728952.1"
                     /translation="MSKKLFSLLTTLLIVLATVTMATAQQRRNFPQQRGNFQSQAASN
                     RAAQSDAATVFRSARDMITDGDWAKAQQKFSEYVSSYPNEKNLDAALYWLAYSQHKLE
                     RYDECRKTINQLLEKYPQSNWRDDARVLLVQVPGAYVIDTYEARPVRVPGGAYAIEPG
                     QTPRPARAPGAYVIEPGQTPRPVPPPDVT"
     gene            complement(587..1366)
                     /locus_tag="VGD38_12835"
     CDS             complement(587..1366)
                     /locus_tag="VGD38_12835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728953.1"
                     /translation="MRELVMKSEVDLELLKEYLDGDDAAEEELFARYERDVQIPSDLW
                     AGIEEQITPAHETSFKWWLRVAAVLLLTIGLAISYILFRSPEKNETTAKKVEVPAPVE
                     PEPERAVVEPVRKFKKIKKPIKVDNPGVLSTDLGYLDIDERETAKHIEQTENLLRSIR
                     NFQIADTDDEIDVSYDKALSRRLLIENVVLRREAEMKAKFPTKTLLADLEPFLIDIAN
                     LPDQAKPEEVRAIKERVQKTEIVAALLDYQDRGQDRGPNNR"
     gene            complement(1341..1976)
                     /locus_tag="VGD38_12840"
     CDS             complement(1341..1976)
                     /locus_tag="VGD38_12840"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0728954.1"
                     /translation="MMKRLTVDELSLEGQPGAFAGTLMNSSADLVTRVCAGDAEAFRL
                     IFERYSRPVISFIFDMVNDRALAEELTQETFVRAYRAIHTMRRETKLSTWLFGIARNV
                     ARESLRARTRAVRHVDLADKSVMDLKDEKAVPVEGVLSKELNDVIRRSLSALDEDKRL
                     VFTLKVLHQCSYEEIAEITGFSLAKLKTDLHRARAEMRRRIGAYAGVGYEV"
     gene            complement(1989..>3040)
                     /locus_tag="VGD38_12845"
     CDS             complement(1989..>3040)
                     /locus_tag="VGD38_12845"
                     /inference="COORDINATES: protein motif:HMM:NF012550.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HEY0728955.1"
                     /translation="YGESPEGGSEAICHNAVVEDLALPGQVVIGTDSHTCMAGVLGCF
                     AFGVGSTDMANAWYTKDIRIRVPETVRYVLKGKKRADVAAKDVMLVILATEYMKTSKG
                     IGKVLEFAGEDLRNWSMDERATLTNMAVEAGGTTGIIEPDEVTLDYIVRTRDLDAEEV
                     QKGFTFSDPDAEYAAIFEIDLDEIRPMVATPGDPRNGIPIDELTEDIKIDAAYGGSCT
                     GGKMADMDMYAEGLANALANGQRVAEGVHLYIQFGSQKIKQYARERGYIEIFEKAGAE
                     LIDPSCGACINAGPGASPNAETVTVSAQNRNFPGRSGPGKLYLASPYVVAASAIAGKI
                     VEPADFLKPLPALSH"
BASE COUNT          560 a          887 c          874 g          719 t
ORIGIN      
        1 ggtgacatcg ggcggcggca ccggtctcgg cgtctggccc ggctcgatca cgtaagcgcc
       61 cggcgctctg gcgggtcttg gcgtctggcc gggctcgatc gcgtatgcgc cgccgggtac
      121 tcggaccggt ctggcttcgt aagtatcgat gacgtacgcg cccgggacct ggaccagcag
      181 cacgcgggcg tcatcgcgcc agtttgattg gggatacttt tcgagtagtt gattgatcgt
      241 cttgcgacac tcgtcatacc gctcgagttt gtgttgtgag taggcgagcc agtagagcgc
      301 ggcgtcgagg ttcttttcgt tgggatagga cgaaacgtac tcgctgaatt tttgctgcgc
      361 cttggcccag tcgccgtcgg tgatcatgtc gcgcgcgctg cggaagacag tggctgcgtc
      421 tgattgggcg gcgcggttgc tcgcggcctg gctttggaag tttccgcgtt gctggggaaa
      481 gtttcggcgt tgctgggccg ttgccatcgt gacggttgcg agcacgatga gcagagttgt
      541 cagtaatgag aagagttttt tcgacattgt tttcgcctcg aattcattaa cgattgtttg
      601 ggcctcgatc ctgccctcta tcttgatagt ccagcaacgc agcaacgatt tcagtctttt
      661 gcactcgttc cttgatcgcg cgcacttctt cgggtttcgc ctggtcgggt aggttggcga
      721 tgtcgatcag gaacggttcg agatcggcga ggagtgtttt cgtgggaaac ttcgccttca
      781 tctcggcctc gcgccgcagg acgacgtttt cgatcagcag gcgccgcgag agtgctttgt
      841 cgtaggagac gtcgatctcg tcgtcagtgt cggcgatctg gaagtttcgg atcgaacgca
      901 ggagattctc ggtctgttcg atgtgcttcg ccgtctcccg ctcgtcgata tccaggtaac
      961 ccagatctgt cgacagaacc ccggggttat ccaccttaat cggttttttt atcttcttaa
     1021 atttccttac tggttctact accgctcgct cgggttcagg ctcaacaggc gccggcacct
     1081 cgaccttttt agccgtggtt tcgtttttct cgggcgagcg gaacaggatg taagagatgg
     1141 ccaaaccgat tgttaataag agtaccgctg cgacgcgtag ccaccacttg aatgaggttt
     1201 cgtgagcggg cgtgatctgt tcttcaatcc ccgcccaaag gtcggacgga atctgcacgt
     1261 cgcgttcgta gcgcgcgaag agttcttctt ctgcggcgtc gtcgccgtcg aggtattctt
     1321 tcaataattc aagatcgact tcagacttca taaccaactc ccgcatacgc accgatgcgc
     1381 cgccgcatct ccgcccgcgc acgatgcaaa tccgtcttca acttcgccaa cgaaaaccct
     1441 gtaatctccg caatctcttc gtagctgcac tggtgcaaca ccttcagcgt gaacaccagc
     1501 cgcttgtctt catcaagcgc ggagagcgaa cgtcgaatta cgtcgttcaa ctctttgctg
     1561 agcacgccct caaccggcac cgctttttca tcttttaaat ccatgaccga cttgtccgct
     1621 aaatccacgt gccgaacggc acgtgtccgg gcgcgcaacg actcgcgcgc gacgtttcgc
     1681 gcaatcccaa agagccacgt cgagagcttc gtttcgcgcc gcatcgtgtg tatcgcgcgg
     1741 taagcacgca cgaaagtctc ctgcgtcaac tcctccgcga gcgcgcgatc gttgaccatg
     1801 tcgaagatga aactaatgac cggacgcgaa taccgttcaa agatcagacg aaaagcctcg
     1861 gcgtcgcccg cgcacacgcg agtaaccagg tctgctgaac tattcatcag agttcccgcg
     1921 aaggcgccag gctgaccttc aagacttagt tcatcgaccg tcagccgttt catcatgtac
     1981 ccggtaggtt agtgagaaag ggcaggcaaa ggtttcagga aatccgccgg ctctactatc
     2041 ttgccggcga ttgccgaggc ggcgaccacg tagggtgacg cgaggtagag cttgcccggg
     2101 ccgctgcggc cgggaaaatt gcggttttgg gcgctgactg tgaccgtttc cgcgttgggc
     2161 gaagcgcccg gacctgcatt gatgcaggcg ccgcaggaag gatcgatcag ctccgcaccg
     2221 gctttttcga agatctcgat gtaaccacgc tcgcgcgcgt actgcttgat cttctgcgag
     2281 ccaaattgaa tgtagaggtg tacaccttcg gccacacgct ggccgttcgc gagcgcgttt
     2341 gcgagccctt cggcgtacat gtccatgtcg gccatcttgc cgccggtgca cgaaccgccg
     2401 taggcagcgt cgatttttat gtcttcggtc agttcgtcga tcggaatgcc gttgcgcgga
     2461 tctccgggcg tcgcaaccat cggccggatt tcgtcgagat cgatctcgaa aatcgctgca
     2521 tactccgcat cgggatcgct aaaagtaaat cccttctgga cctcttccgc gtcgagatcg
     2581 cgcgtgcgca cgatgtagtc gagtgtgact tcgtcaggct cgatgatgcc ggtcgtgccg
     2641 ccggcctcga cggccatgtt cgtcagcgtg gcgcgttcgt ccatggacca gttgcgcaga
     2701 tcttcgccgg caaactcgag caccttgccg atgcctttgc tggtcttcat gtactcggtc
     2761 gcgaggatga cgagcatcac gtctttcgcg gcgacgtccg cgcgcttctt acctttcaga
     2821 acgtagcgca cggtttctgg aacgcgaatg cgaatgtctt tcgtgtacca cgcgttcgcc
     2881 atgtcagttg aaccaacgcc gaaagcaaaa cagccgagca caccggccat gcacgtgtgc
     2941 gaatcggtgc cgatcacgac ctggccaggc aacgcgagat cttctaccac cgcgttgtga
     3001 caaatggctt cagatccccc ctccggactc tcgccgtaga
//
LOCUS       DASWTX010000849         4522 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_407134, whole genome shotgun sequence.
ACCESSION   DASWTX010000849 DASWTX010000000
VERSION     DASWTX010000849.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4522
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407134"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            719..1792
                     /locus_tag="VGD38_12850"
     CDS             719..1792
                     /locus_tag="VGD38_12850"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HEY0728956.1"
                     /translation="MRRTTFSLTKTVLALAAFAFVYAGGVMGQTTTVAHDTANPEKII
                     QAFTAKEAEFRRALNSYSFKRDALIQSLGMGGQVIGEYHRVSNFTFDDQGHRFEKITF
                     FPMPSMPQVTSEDIDDLGGISPFALEPSKLDKYTIRYVGKEKIDELNLYIFDVQPKVI
                     PEPKSKERLFLGRIWVDDQDLQIVKTKGKGVPETKNNKYPIVETYREQIDGRYWFPTY
                     SYADEELVFDNGSTLHVRLKVRYTDFTPARATLKVTEIGEDETPSGAAKPVEFGVLNP
                     KAVTLPKPAYTEEHKRVKARGKVTVRVVVDESGKVTSAQAVDGPVPLREAAEAAARQA
                     VFTPFTEGGIVVKATGVLTYDFP"
     gene            complement(1772..2497)
                     /locus_tag="VGD38_12855"
     CDS             complement(1772..2497)
                     /locus_tag="VGD38_12855"
                     /inference="COORDINATES: protein motif:HMM:TIGR00530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEY0728957.1"
                     /translation="MRRLHYWWSLFLAGALLGVLGPPILIIAWLVNKHDLVYPVASLG
                     AWLWLYLSGVRVNVRGLELLDPKQTYVFVSNHRSYLDTATLFLFTGRRIGLLAKKELL
                     KVPVLGVGMGFVNVMAIDRSNRESAIRTTEAAAERIRSGISFGVFVEGTRAKPGELLP
                     FKKGAFYMARQAGVPVVPVAIKYSDELMGKGTGEAKSGTLEMVMMQPVPTKDVATDED
                     INKLIANVRGSIAKELGLREVVG"
     gene            2537..>4522
                     /locus_tag="VGD38_12860"
     CDS             2537..>4522
                     /locus_tag="VGD38_12860"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family metallopeptidase"
                     /protein_id="HEY0728958.1"
                     /translation="MISHRYIRAVLAAMAVVLCVAASSFAQGQDYRRPPLQSATIPSP
                     KSVLGFTPGDDRTIAGWSQITDYFERLDRASDRVVVQTLGQSTLKRPLIVAIISAREN
                     ILALAKYKDIQRQLADPRLVTQRGQRERLIAEGKVVVTISCSIHSTEIVASQMSMQLA
                     YELASATDPATREILQNTIVLLIPSPNPDGIDIVANWYRKTLGTTYEGKEPPELYHHY
                     AGHDDNRDWFMLNLKETQLVTRLLWHEWFPQIVYDVHQQGANGSRFFIPPFYDPPNPN
                     ISPVLLRQVGLVGHKVAADLTAAGFKGILTNALYDTWWHGGFRTAPYYHNSIGILSEA
                     ASARLMTPTTVTSEQLTRSSTRGMRNATEAMTNFPNPWPAGTWRPRDIMDMEMIASRA
                     ILSMAAKFRETYLQNFYELGRKNVEQTSKPDQPIAYLIPAGQARDEAVAKLIASLLGQ
                     GVEVHRLNRELHLTFGSQTLQRTNAPGERLGAYRTIIANSTMSEVPLGSYIVFLNQPQ
                     RANIAALFEPQIYPNRLTAQGEAERPYDVAGWTLPLQMGVDAPAVTAIREAENERRLT
                     RLTDPNQVRSDLALPLAKGDESPIRNPVKQTVRVGIYKGSTSNMDEGWTRYIFDTFNV
                     PYSSARDADIRQGGPHTKFEVLLFPSQRSTEIVAGNAA"
BASE COUNT         1056 a         1389 c         1188 g          889 t
ORIGIN      
        1 cgaccgcggc cgcgaggcgg tgcggctgct actggccgag ggacaccaga ggggcattat
       61 tccccacccc gtggctgtag atttcgtcga agcgtagaat tagcactcca aagaggcacc
      121 cactctcgtc gtcttaagaa gtattgtagt tttagggatt tttagaggct aaagctgggg
      181 tgtgcgcggt gattttatta agccaccccg cccagaaggg gcagctaacc accgcgcaca
      241 tcatcggcct caagccacgt aaaaccaagc tcctcccaaa gcctggttta tcgcccgcgc
      301 cgtgtaagca acgccgccgc tcggcgtcac gtctgcgctc ccgcgccgta aagctccacg
      361 gtgctaagac gagtgcctgt tgccgacatg aggaccttga gaaacttttt aatttcaaac
      421 tagctgagcc gcgaatcttt cgaggtcttt cgggctccaa ttttttcatc aataagtccg
      481 ttgagtggac tataacttat tctagtatgg gcaccttaca ctagatgcag gaaactttgc
      541 aacaggaaaa tggctttggg ggtcccggcc ggggcggctg ccccgggggc gcccagccgg
      601 ttccaagccc gggctggcaa caggagtatt tcgttccggc atctgagcac cggccatccc
      661 cccggaccac ccagggaggg caatcactcc cagtaaggat atgcagcagg atatgaacgt
      721 gcgacgaact actttctctt tgactaaaac agtgctggct cttgcagcgt ttgcctttgt
      781 ttatgccggc ggcgttatgg gccaaaccac tacggtggcg catgacactg ccaacccgga
      841 aaagatcatt caagcgttta ctgccaagga agcagagttt cgccgcgctc tcaacagcta
      901 ctcgttcaaa cgcgacgcac tcatccaaag cctcggcatg ggcgggcaag tgatcggcga
      961 atatcatcgc gtctcaaatt tcactttcga cgatcaggga caccggtttg aaaagatcac
     1021 cttctttccg atgccctcga tgccgcaagt cacctcggaa gacatcgacg acctgggagg
     1081 catttcgccc ttcgccctgg aaccatccaa gctcgacaag tacacgatcc gttacgtcgg
     1141 taaagaaaag atcgacgagc tgaaccttta catcttcgac gtccagccga aagtcattcc
     1201 ggaaccgaag agtaaagagc ggttgtttct cggacgcatc tgggttgacg atcaggacct
     1261 acagatcgtg aagacaaagg gaaagggcgt tccggaaacg aagaacaaca agtatccaat
     1321 tgttgaaaca tatcgcgagc agatcgacgg ccgttactgg tttccgacct actcctacgc
     1381 ggacgaagag ctcgtttttg acaacggcag cactctgcac gtgcgcctga aagttcgtta
     1441 caccgacttc actcccgcac gcgcaacact caaagtcacg gaaatcggtg aggacgaaac
     1501 gccgagtgga gccgccaagc ctgtcgaatt cggagtgctg aacccgaaag ccgtgacgct
     1561 gccgaagccc gcttatacag aagagcacaa gagggtcaaa gcacgcggga aagtcacggt
     1621 gcgtgtagtt gttgacgaga gtggaaaggt gacttcagcg caagctgtcg atggaccagt
     1681 gcccttgcgt gaggccgcgg aagcagcagc gaggcaggca gtctttactc cgttcactga
     1741 aggcggaatc gtggttaagg cgaccggcgt cctaacctac gacttcccgt aagccaagct
     1801 cttttgcaat cgagccacgg acgttagcga tcaacttgtt gatgtcttcg tccgtggcta
     1861 cgtcttttgt gggcaccggc tgcatcatca ccatctcgag tgttcccgac ttcgcctcgc
     1921 cggttccctt gcccatcaat tcatctgaat acttgatcgc taccggcacg accggcacgc
     1981 cggcttgccg ggccatgtag aaagcaccct ttttgaacgg cagcaactcg cccggtttcg
     2041 cgcgcgtgcc ttcgacgaaa acgccaaacg aaattcccga gcgaatgcgt tccgcagcag
     2101 cttccgtcgt acggatcgca ctctcgcgat tactccgatc gatcgccatc acgtttacaa
     2161 aacccattcc aacgccgagc accggaacct tcaacaactc cttcttcgcc agcagcccga
     2221 tgcggcgccc ggtgaaaaga aacagtgtcg cggtgtcgag ataggaacgg tgattggaaa
     2281 cgaagacgta ggtttgcttt ggatcgagca gctccagccc gcgcacgttc acgcgcacgc
     2341 cacttaaata caaccaaagc cacgcgccca agctcgccac cgggtaaacg agatcgtgct
     2401 tgttaacgag ccaggcaata atcagaatcg gcggtcccag cacgccgagc aacgcgcccg
     2461 ccagaaacag cgaccaccaa tagtgcaatc gccgcataaa actgcgcggc ctcgttatgc
     2521 tagactcctc ggccatatga ttagccatcg atacattcgg gcagtgctgg ctgccatggc
     2581 cgtcgtcttg tgtgttgccg catcgtcttt cgcgcaaggc caggattatc gaagaccgcc
     2641 gctgcaatcc gctacgatcc cgtcgcccaa atccgttctc ggcttcacac cgggagacga
     2701 tcgcactatc gccggctggt cgcagatcac cgattatttc gaacgtctcg atcgcgcttc
     2761 ggatcgcgtc gtggtccaaa cgttgggcca atcgactttg aagcggccgt tgatcgtagc
     2821 catcatcagc gcgcgagaga atatactggc gctcgcaaaa tacaaagaca tccagcgcca
     2881 actcgccgat ccgcgcctgg ttacgcagag aggccaacgc gaacgtctta tcgccgaagg
     2941 caaagtcgtc gtcaccatct cctgctcgat tcactcgacg gagatcgttg cgtcgcagat
     3001 gtcgatgcaa ctcgcctatg aactcgcaag cgcgaccgat cccgcaactc gagaaatcct
     3061 tcagaataca atcgtgcttt taatcccttc accgaatccg gacggcatcg acatcgtcgc
     3121 caactggtat cgcaaaactc tcggcaccac gtacgaaggc aaagaaccac ccgaactcta
     3181 tcaccactac gccgggcacg acgacaatcg cgactggttc atgttgaacc tgaaagagac
     3241 gcaactggtc acgcgtctgc tgtggcacga gtggtttccg cagatcgttt acgacgtaca
     3301 tcagcaaggc gcgaacggtt cgcggttctt tattccgcct ttctacgatc caccgaaccc
     3361 aaacatctcg cccgtgctgt tgcggcaggt cggtctcgtg ggccacaaag tcgccgccga
     3421 tctgacggcc gccggtttca aaggcattct gaccaacgcg ctttacgaca cgtggtggca
     3481 cggcggtttt cgcaccgcgc cgtactatca caactcgatc ggcatccttt ccgaagctgc
     3541 cagcgcgcgc ttgatgacgc ccacgacagt caccagcgaa caactcactc gctcatcgac
     3601 gcgtggcatg cgcaacgcga cagaagcgat gacgaacttt cccaacccgt ggcccgccgg
     3661 cacgtggcgc ccgcgcgaca tcatggacat ggagatgatc gcgtcgcgcg cgatactctc
     3721 gatggccgcg aagtttcgcg agacttactt gcagaacttt tacgagctcg gacgaaagaa
     3781 cgtcgagcag acgtcgaaac ccgatcagcc gattgcttac ctgattccgg cgggacaagc
     3841 acgcgatgaa gcagtcgcaa aactgatcgc gagcttgttg ggccagggcg ttgaggtcca
     3901 tcgtctcaat cgcgagctgc acctcacgtt tggatcacaa acactccagc gcaccaacgc
     3961 acccggcgag cggctcggcg cctatcgcac catcatcgca aactcgacga tgtccgaagt
     4021 gccgctcggc agttacatcg ttttcttaaa tcaaccacag cgcgccaaca tcgccgcgct
     4081 ctttgaaccg cagatttatc ccaaccggct caccgcgcaa ggtgaagccg aacggccata
     4141 cgacgttgcc ggttggacgc tgccgttgca aatgggcgtc gatgcgcccg cggtcaccgc
     4201 gatccgtgaa gcagaaaacg aaagacgtct aacccgtctt accgacccaa accaggtacg
     4261 atccgatctt gcgcttcctt tggctaaggg cgacgaatct ccaatcagaa atccggtcaa
     4321 acagacggtc cgcgtcggca tctacaaagg ctcgaccagc aacatggacg aaggctggac
     4381 gcgctacatc ttcgacacgt tcaacgtccc ttattcatcg gcgcgcgacg cggacatccg
     4441 ccagggcggg ccgcacacaa aattcgaggt gctgctattt ccatcgcaac gcagcaccga
     4501 gatcgtggcc ggcaacgcgg cc
//
LOCUS       DASWTX010000850         4725 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_9922, whole genome shotgun sequence.
ACCESSION   DASWTX010000850 DASWTX010000000
VERSION     DASWTX010000850.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4725
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9922"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2010
                     /locus_tag="VGD38_12865"
     CDS             <1..2010
                     /locus_tag="VGD38_12865"
                     /inference="COORDINATES: protein motif:HMM:TIGR01733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-ribosomal peptide synthetase"
                     /protein_id="HEY0728959.1"
                     /translation="EQPTIARMLRHVETLLDGIAATPEARLSELPLLTKEEQEQVREW
                     NQTTSEYERDQCVQQLVETAVARQPDAIAISYGAEQITYRELNTRANQLAHHLRRQGV
                     GPDVRVGVLVDRSVELIVALLAILKAGGTYVPLDGSYPAQRLRFMLEDAGVTLLLTQR
                     EQPEILTEGEAVYLDHGWEQFESESHENPDVVTTAEDLAYVMYTSGSTGQPKGVGVPH
                     RAINRLVRNTNYVQLDASDRIAQVSNVSFDAATFEIWGALQHGAQLVGIDKETMLSPV
                     EFKRALAEQNISAMFLTSALFNQIAQSLPETFAPLRYLLVGGEALDPPSIRRVVERGK
                     PRHLLNGYGPTESTTFATWYEVQHVEANARTIPIGKPLSNTQTWVLDQHMQLAPVGVT
                     GELYIGGDGLARDYLRRPELTAEKFVPHPYSTEPGARLYRTGDLVRYLSDGNIEFLKR
                     VDQQVKLRGFRIELGEIEAALQEHQAVRESIVMVREEIPGDKQIVAYVVKDPEFQSTT
                     EELRNWLRTRLPAYMMPSSFVVLDELPLNANGKVDRRALPAPDAAQHAGEETFIAPRT
                     PEEKTIAEIWAEVLDGRPISVGANFFELGGHSLLATRVISRIREKCGVELPLRLLFDS
                     PTVAALASQLAAAQPSQTEASRIAEMLDALASLSDEETKTLLNQS"
     gene            2012..>4725
                     /locus_tag="VGD38_12870"
     CDS             2012..>4725
                     /locus_tag="VGD38_12870"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEY0728960.1"
                     /translation="MSKIAERIAKLPPNRQELLARLLKQRQIDLSHAVIMPRVRESNL
                     APLSFSQQRLWLFLQLDPDNISYNIPEAFRLKGQLSVTALVQSFSEIVRRHEALRTTL
                     QLVSGQPMQVIGRPQPIALEVIDLRRLPQPQRETTAQRLTDEEAQRPFDLARGPLLRV
                     RLLKLDDEEHILLVTLHHIVSDGWSAGILGDELTTLYQSFSRGQSSPLPDLPIQYADF
                     AMWQRDWLSGDVLEEQLGYWREKLSGALPVLELPADRLRPAIQSHRGAAEALDLSEEL
                     SRRVQGLSNDEGATLFMTLLAAFMLLVHRYTGQTDICVGVPIANRNRAETENLIGFFV
                     NNLVLRSDLEGNPTFRSFLAQIEQETLNAYAHQDMPFEKLVEELQPERSLSYMPLFQL
                     MFMVQNTPRGNSIIGRLDSSEVEIAITTTKYDLSLSITEIDNHLYAFVIYNSDLFDAT
                     TIQRLLKHYEILLESIVANPQQHIEELPLLMEEELRLFDDVNNTRTEYPEEMRIHELF
                     EEQAARTPDAIAVVCDDRQLTYGELNYQADALAQCLRQRGVGTETIVGILMERSLEMV
                     IGLLGVLKAGGAYLPLDLNYPKQRLALMLEEAQVSLILSQEQCRESLPEFHGEVMCLD
                     SDAVWSSSSSAEKKAELRTDSLAFVLYTSGSTGKPKGVMATQRSAVNYLTSIVRDYGV
                     STADTVLQTASLSFDASVRDIIGPLIAGAKLVLVPDNNDVKDPFALCSKIKEHDVTCI
                     LSITPTVLRSLTDAAAESGSKGETLRLILTSGESLSLPECARVRAVLGERISIVNQYG
                     ATECTMSSTRYRVPESQSSGMALAGKPIANTQVYILDLHFARCPIGVPGEIHIGGVGV
                     ARGYLKSPPVTALKYIPNPFTERAGARMYSTGDVGRFLPGGDIELHGRV"
BASE COUNT         1096 a         1374 c         1341 g          914 t
ORIGIN      
        1 gagcagccca cgattgcccg aatgctgcgg cacgtcgaga ccttgttgga cggcattgcc
       61 gcaacccccg aagcgcggct gtcagagttg ccgctcctga caaaggaaga gcaagagcag
      121 gtccgcgagt ggaaccaaac aaccagcgaa tacgaacgcg atcagtgtgt acagcagtta
      181 gttgaaacag cggtcgcacg ccaacctgac gcgatagcca taagctacgg cgcggaacag
      241 atcacttatc gcgaactgaa cacgcgtgcg aaccagttag cgcaccacct gcggcgacaa
      301 ggcgttggac cagatgtgcg tgtcggcgtc ctggtggacc gttcggtaga actgatcgta
      361 gcgctgttgg caattctcaa agcaggcggg acctacgttc cgctggacgg aagctacccc
      421 gcgcagcgct tgcgattcat gttggaagat gcaggcgtga cgttgctgct gacccagcgc
      481 gaacaaccgg agatcctgac agaaggagag gctgtctatc tggaccacgg ctgggagcag
      541 ttcgaaagcg aaagccacga gaacccagac gtcgtgacga ccgcagaaga cctcgcctac
      601 gtcatgtaca catccggatc gacgggacaa ccgaaaggcg tgggagtccc tcaccgcgcg
      661 atcaatcgac tcgtgcgaaa cacgaactac gtgcagctcg acgcgagcga tcggattgcg
      721 caagtgtcca acgtttcttt cgacgcggcg acgttcgaga tttggggggc gttgcagcac
      781 ggcgcgcagt tggtcggaat cgacaaagag acgatgctgt cgcccgtgga gttcaaacgt
      841 gcgctcgcgg aacaaaacat cagcgcgatg tttttgacgt cggcgttgtt caatcagatc
      901 gctcagagcc tgcccgaaac ttttgcgcca ttgcggtatc tacttgtcgg aggtgaagcg
      961 ttggatccgc cgtcgatccg ccgcgtagtg gagcgaggaa aaccgcggca cctgctgaac
     1021 ggttacggtc cgaccgagag tacgaccttc gcaacgtggt acgaagtgca acacgttgag
     1081 gcaaacgcgc gcacgatccc gatcgggaaa ccgttgtcga acactcaaac gtgggtgttg
     1141 gaccagcaca tgcagctggc gccggtggga gtaacgggtg aactctacat tggcggagac
     1201 gggttggcgc gcgactactt gcggcggccc gagttaacgg ctgagaagtt tgtgccgcat
     1261 ccctacagta ccgaacccgg agcgcggcta tatcgaactg gcgatcttgt gcgctacctg
     1321 agcgacggca acatcgagtt tctcaagcgc gtggaccagc aggtcaagct tcgcggcttc
     1381 cgtattgaac tgggagagat cgaggccgca ttgcaggagc accaagcggt gcgcgagagc
     1441 attgtcatgg tccgggaaga aattcccggt gacaagcaga tagtggccta cgttgtgaaa
     1501 gaccccgagt ttcaatcaac aaccgaggag cttcgcaact ggttacggac acgcttgccg
     1561 gcttacatga tgccgtcaag tttcgtcgtg ctcgacgaac tgccgctcaa cgccaacggc
     1621 aaggttgatc gtcgcgcgtt acccgcgcct gatgccgcgc aacacgccgg cgaagaaacg
     1681 ttcatcgcgc cgcgcactcc cgaagagaaa accatagccg agatctgggc cgaggtgctt
     1741 gatggccggc caatcagcgt cggggcaaat tttttcgagt tgggcggcca ctcgttgctg
     1801 gcgacgcgcg tcattagtcg catccgcgaa aaatgcggcg tcgaactccc actacgattg
     1861 ttatttgact caccgaccgt tgcggcgctg gccagccaac tcgccgccgc acaaccctcg
     1921 caaaccgaag ccagccgcat tgccgagatg ctggacgcgc tcgcttccct ttcagacgaa
     1981 gaaacgaaaa cgctgctgaa ccaaagctga gatgagcaag atcgcggaac ggatcgcgaa
     2041 gctcccgcct aaccgccagg agctgctcgc gcgcctcttg aaacaacgcc agatcgatct
     2101 gtcacacgcg gtgatcatgc cgcgtgttcg tgagtcgaac cttgctccgc tttcattttc
     2161 acagcaacgt ctctggctct tcctgcagct cgatcccgat aacatctctt acaacattcc
     2221 cgaagccttt cgtctcaagg gacagctctc ggtaacggcc ctggtccaaa gcttcagcga
     2281 gatcgtgcgc cgccacgaag cactgcgcac cacgcttcaa ctagtctccg ggcagccgat
     2341 gcaggtgatc ggtcgccctc agccgatcgc cttggaagtg atcgacttga ggcgactacc
     2401 acaaccacaa cgcgaaacaa cagctcagcg actaacagat gaagaagcac agcggccgtt
     2461 cgatctcgcg cgtggtccac tgctgcgcgt acggctgctg aagcttgacg atgaagaaca
     2521 catactgctc gtgacgcttc atcatatcgt cagcgacggc tggtccgccg gcattctggg
     2581 agacgaactg acaacgctct atcagtcctt ttctcgcggc cagagctcac cacttccgga
     2641 tttgccaatc cagtacgccg acttcgctat gtggcaacgc gattggctga gtggtgacgt
     2701 gttggaagaa cagctcggct attggcgtga gaaattgagt ggcgcattgc cggtgctgga
     2761 gttgccggcc gatcgcttac gtcccgcaat tcagagtcat cgaggcgcgg ccgaagcact
     2821 cgatctttcg gaagaactga gccgcagggt gcagggtctc agcaatgacg aaggcgcgac
     2881 cctcttcatg actctgctcg ccgcattcat gctgctcgtc catcgctaca ccgggcaaac
     2941 agacatttgt gtcggcgtgc ccatcgccaa tcgcaatcgc gctgagacag aaaacctcat
     3001 tggcttcttc gtaaacaacc tcgtgctgcg cagcgatctc gagggcaatc caacgtttcg
     3061 atcgttcctg gcccagatag aacaggaaac gctcaacgcg tacgcgcacc aggacatgcc
     3121 gttcgagaag ttagttgagg aactgcaacc ggagcgcagc ctgagttaca tgccgctctt
     3181 ccagttgatg ttcatggtcc agaatacgcc gcggggaaat tctattattg ggcgcctcga
     3241 ctcctcggaa gtcgaaatcg ccattacgac cacgaagtac gatctatcgc tttcaataac
     3301 cgaaatcgac aaccatctct acgcgtttgt tatttacaac agcgacttgt tcgatgcgac
     3361 cacgatccag cgcctgctga agcattacga gattctgctt gagagcatcg tcgcgaatcc
     3421 acagcaacac attgaagagc tgccgctgct gatggaagaa gagctgcgac ttttcgacga
     3481 cgtaaacaat acgcggaccg agtatccgga agagatgcgg atacacgagt tgtttgaaga
     3541 acaggccgca cgcacgccgg acgcgatcgc cgtcgtctgt gacgacagac aactgaccta
     3601 cggagaactg aactaccaag ctgatgcgct ggcccagtgt ctacggcaac gcggcgtcgg
     3661 gaccgaaacg atcgtcggca ttctgatgga gcggtcgtta gagatggtaa ttggcctgct
     3721 gggtgtgctg aaggccggcg gagcatatct cccactcgat ctgaattacc caaaacagcg
     3781 actggcgctg atgcttgaag aggcgcaagt gagtctaatc ctgtcgcagg agcagtgtcg
     3841 ggaaagtctg cctgaatttc acggcgaagt catgtgcctc gatagcgacg cggtttggag
     3901 ttcgagttcg tccgctgaaa agaaggctga actcagaacc gactcgctgg cgtttgttct
     3961 ctacacatcc ggatccaccg gaaaaccaaa aggcgtcatg gcgacgcagc gtagcgcagt
     4021 caactatctc acttcgattg ttcgtgacta cggcgtttcg accgcagaca ctgtcctgca
     4081 aacagcttca ctctcgtttg acgcatcggt ccgcgacatc attggaccac tcattgccgg
     4141 cgcaaagctc gtgcttgttc cagacaacaa cgatgtcaaa gatccatttg cactgtgctc
     4201 aaaaatcaaa gagcacgacg tcacctgcat cctgagcatc acgccgacag tgctgcggag
     4261 tttgacagac gccgcggccg aaagcggaag caaaggcgag acactgcgac tgatccttac
     4321 gagcggagaa agcctgtcac tcccagaatg cgcacgcgtg cgagcggttc tcggcgagcg
     4381 tatctcgatc gtcaatcaat acggcgcgac ggaatgcacg atgtcgtcaa ctcgctatcg
     4441 cgtgcctgaa tcgcagtctt caggaatggc tcttgccgga aaaccgatcg ccaacaccca
     4501 ggtttacatt ctcgatcttc acttcgcgcg atgcccgatc ggcgtaccag gcgaaataca
     4561 catcggcggc gtcggagtgg cccgtggcta tctcaagagt ccgcccgtaa ctgcgctcaa
     4621 atacattccc aatcccttca ctgaaagagc cggcgcacgc atgtacagca ccggcgacgt
     4681 gggacgtttc ctgcccggcg gcgatatcga gcttcacggt cgagt
//
LOCUS       DASWTX010000851         1653 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_363545, whole genome shotgun sequence.
ACCESSION   DASWTX010000851 DASWTX010000000
VERSION     DASWTX010000851.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1653)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1653)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1653
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363545"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(94..1062)
                     /locus_tag="VGD38_12875"
     CDS             complement(94..1062)
                     /locus_tag="VGD38_12875"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY0728961.1"
                     /translation="MNTDLSIIIVNWNGGELLRRCVETIVSSQPSVTYEVVIIDNAST
                     DDSLAQLNASEAATVLSANQKLRIFNNTENRGFGAANNQAFALTDSPFVFLLNLDTEV
                     HPGTIDTLMRTMHSDPKIGACGPKILNSDGSLQISAFFNPPRVWHTFLSQLKLYYLLP
                     QRIRGELLLGQHWDHNRQRCVPMLSGAAILARRKMIDEVGGFDERFHMYSEDSEWCWR
                     ITRTDWKLMFVPEAVVLHHGGQSSMKRWSSDEKIRVMLEAGFYFEHRVLPRWRLAANQ
                     LANYLVVSAQIAGRSVRGIHIPELYLIKKLHREHLKRSLWNHLERD"
     gene            complement(1059..>1653)
                     /locus_tag="VGD38_12880"
     CDS             complement(1059..>1653)
                     /locus_tag="VGD38_12880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728962.1"
                     /translation="GQRIWNAVGFDAHKQKLVSEGRSLDVLVNGWTVTGATMAFRSHY
                     VPLALPIPTNIAMIHDGWIALTIAAVADVVFIEAPLIDYRQHERQQIGAPKRSAVQPE
                     RGLQAIESALRRRVSTTDLHEILAALEERLVAQQHAFDCRRALAFAANYSNHLDVRAN
                     LPRKRLSRVPRILRELLTMRYHEYANGFKSAAKDLVS"
BASE COUNT          336 a          457 c          507 g          353 t
ORIGIN      
        1 ggcagagccg ctgagaaaaa cacgaccggc ggcagagccg gtttgaaggc gagcttagtt
       61 ttaaaaaagc ccgcttctct caaacgtacg gcgttagtcg cgttcgaggt ggttccagag
      121 ggagcgcttg aggtgctcgc ggtggagttt cttgattagg tagagctcgg ggatgtggat
      181 gccgcgcacc gagcgacccg cgatctgcgc cgacacgacc aggtagtttg cgagttgatt
      241 cgccgcgagt cgccagcggg gcagcacgcg gtgctcgaag taaaatcccg cctcgagcat
      301 cactcgtatc ttttcatcag acgaccagcg cttcattgaa ctctgcccgc cgtgatgaag
      361 cacgaccgct tccggcacaa acatcagttt ccaatccgtc ctcgtgatcc gccagcacca
      421 ctcgctgtct tccgagtaca tgtgaaaccg ttcgtcaaat ccgccgactt catcaatcat
      481 cttccgccgc gcaagaattg cagcgccgct cagcatcggc acgcagcgct ggcgattgtg
      541 atcccagtgc tggccgagca acagttcgcc gcgaatacgt tgcggcagca ggtagtagag
      601 ttttagttgc gaaaggaacg tgtgccagac gcgcggcgga ttgaagaacg cgctgatttg
      661 cagcgatcca tccgagttca ggatctttgg cccacacgct ccgatcttcg ggtcggagtg
      721 catcgtgcgc atcagcgtgt cgatcgttcc cggatgaact tccgtgtcga gattgagcag
      781 gaagacaaac ggcgaatcgg tcagggcaaa ggcttgattg ttcgccgcgc cgaagccgcg
      841 gttttccgtg ttgttgaaga tgcgcagttt ctggttggcg cttaagaccg tggctgcttc
      901 actcgcgttc aactgggcca ggctgtcgtc agtcgaagcg ttgtcgatga tcacgacttc
      961 atacgtgacg ctcggctgcg aactgacgat ggtctcgacg caccgccgca agagttcgcc
     1021 gccattccag ttgactatga tgatcgacag atcagtgttc aagaaaccag gtccttcgcg
     1081 gcgctcttaa aaccgtttgc atactcgtga taacgcattg tcagcaactc gcgcaagatg
     1141 cgcggcacgc ggctgagacg tttgcgcggc aagttggcgc gcacgtcgag atgatttgaa
     1201 tagtttgcgg caaacgcgag tgcgcggcgg caatcgaaag cgtgctgctg tgcgaccagg
     1261 cgttcttcaa gcgccgcgag tatttcgtgc aaatcagtgg ttgaaacgcg gcggcgcaaa
     1321 gcggattcga tcgcttgcag gccgcgctcc ggttgcacgg ctgaacgctt cggcgcgccg
     1381 atctgttgcc gttcgtgctg gcgataatcg atcagggggg cttcaataaa aacgacgtcg
     1441 gcgacggcgg cgattgtcag ggcaatccag ccgtcgtgaa tcatggcgat gtttgtcggg
     1501 atcggcaacg ccagcgggac gtagtgagaa cgaaaagcca tcgtcgcgcc ggttacggtc
     1561 cagccgttta cgaggacgtc gagcgatcgt ccttccgaga cgagtttctg tttgtgtgcg
     1621 tcaaagccga cggcgttcca gattcgctgg ccc
//
LOCUS       DASWTX010000852         1669 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_77119, whole genome shotgun sequence.
ACCESSION   DASWTX010000852 DASWTX010000000
VERSION     DASWTX010000852.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77119"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1497
                     /locus_tag="VGD38_12885"
     CDS             <1..1497
                     /locus_tag="VGD38_12885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728963.1"
                     /translation="ESRSVSVGRTILVPGAFNDGSAQRRGGRRQLDFELADNVDYALE
                     KHGVRFGMQLEAGGYRSNDSTNALGTFQFADLEAFEAGLPTQFTQRIGDPTVKYRQYQ
                     FGWYVQDDYRIAKNLTLSYGARHELQNHVGGKFNIAPRLGFVWSPKKNGTITLRGGAG
                     IFYDWFNAQTYEQTLRVDGERQRDIVVINPGFPNPFLGGSQTTLPPSRIQTDPDLQIP
                     YIIQASLGLETNPWKLFRLTTNYQYQRGVHLLHGRNLNAPIPGFGRPDPTVGNITNIE
                     SSAYLSGHRLMIGIGPAKFVQGLFWNVNYLLMKNTNEADSPFSLPSNNFDLRSDRGPS
                     ASDFRHLLSGFISKRLPSGFAVSTIFQMTSALPYNITTGFDDNGDTVINDRPAGVGRN
                     SARGAARWEIGSRLSWGLDFGPDQQPAAGGPQIRMVRVGGGDGAAPPSLPGMAAKKYR
                     LEFYAQAFNLLNHANLGAFSGVMTSPFFGQATSAQSPRRFEVGTRFNF"
BASE COUNT          341 a          545 c          444 g          339 t
ORIGIN      
        1 gaatcacggt ccgtaagcgt gggccgcacg attctcgtgc ccggcgcttt caacgacggc
       61 agcgcgcaac gcagaggcgg ccgccgtcag ctcgatttcg aactcgctga caacgtcgac
      121 tacgcgctcg aaaagcatgg cgtccgtttt ggtatgcaac tcgaagccgg cggttatcgc
      181 agcaacgatt caacaaacgc gctcggcacg tttcagtttg ctgaccttga agcgttcgaa
      241 gccggactgc cgacgcagtt cacgcagcgc atcggcgatc cgacagtcaa ataccggcag
      301 tatcaattcg gctggtacgt ccaggacgac tatcgcatcg cgaagaatct gaccctcagt
      361 tacggcgcgc gtcacgaatt gcagaaccac gtcggcggca agttcaacat cgcgccgcga
      421 ctcggtttcg tgtggtcgcc aaagaagaac ggcacgatca ctctgcgtgg cggcgcgggc
      481 attttctacg actggttcaa cgcgcaaact tacgaacaga cgctgcgcgt cgacggcgaa
      541 cgccagcgcg acatcgtcgt tatcaatccg ggttttccga atcccttcct cggcggttca
      601 caaacaacac tgccaccgag ccgcattcaa accgatccgg atcttcagat tccctacatc
      661 atccaggcct cgcttggcct cgaaacaaac ccatggaaac tgtttcggct gacgaccaac
      721 tatcaatacc agcgcggcgt tcatctcctg cacggccgca acctcaacgc tccgattccc
      781 ggtttcggcc gccccgatcc gactgtcggc aacatcacca acatcgaatc atccgcttat
      841 ttgtcaggtc accgtctgat gatcggcatt ggtccagcga agtttgttca gggactcttc
      901 tggaacgtca actacctgct gatgaagaac acgaacgaag ccgacagccc gttcagcctg
      961 ccttcgaaca acttcgacct gcgctccgat cgcggtccgt cggcgtcaga cttccgccac
     1021 ttgctcagcg gctttatcag caaacgcctt ccatccggtt tcgctgtttc gaccatcttt
     1081 caaatgactt ccgcgctgcc gtacaacatc acgaccggtt ttgacgacaa cggcgacacg
     1141 gtgatcaacg accgtcccgc cggcgtcggg cgtaacagcg cgcgcggcgc ggcacgttgg
     1201 gagatcggtt cgcgtttgag ttggggcctg gacttcggac ccgatcagca acccgctgct
     1261 ggcggaccgc agattcgtat ggttcgtgtc ggcggtggcg atggcgcggc gccaccgtcg
     1321 ttgccgggca tggcggcgaa gaagtaccgg ctcgagttct acgcgcaggc gttcaacctg
     1381 ctcaaccacg cgaatctcgg cgcgttttcc ggcgtcatga cctcgccctt cttcggccag
     1441 gcgacctcgg ctcaatcacc gcgccgtttt gaagtcggca cgcgcttcaa cttctagcca
     1501 acttgccgcg cgaaaatccg tccgctagaa tggctggttt tcgctatggc cattgatcgc
     1561 atcagtgtta agggcgcacg ccaacacaac ctcaagaaca tcaacgtcga cagtccgcgc
     1621 gaccgtttta ctgtgatcac cggcctctcc ggctcgggaa aatcctccc
//
LOCUS       DASWTX010000853         1919 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_165512, whole genome shotgun sequence.
ACCESSION   DASWTX010000853 DASWTX010000000
VERSION     DASWTX010000853.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1919
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165512"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(45..>1919)
                     /locus_tag="VGD38_12890"
     CDS             complement(45..>1919)
                     /locus_tag="VGD38_12890"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF012630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031012 - extracellular matrix [Evidence
                     IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="matrixin family metalloprotease"
                     /protein_id="HEY0728964.1"
                     /translation="AGGGLETIDLTGAPPSPIPGHLLARVISIKWDARSIPVQYRVNN
                     TLDPIPNPLGPAFLSVAAATTELQASLDRWNNIPTSYINMQIVGTVANPGLVGFNMVN
                     EISFRTAAGFSAIASSPSTNLISDVTLEDGDQIDGDADPDVSSAITVATDVDNDGDIE
                     FPAGFYKAGTILDNDVQFNTKTSNGLRFTIDPLQADTVTRSVDLSCVATHEFGHSFGL
                     SHVLDNQRSGSDGDGSTMFPFIDTGDPAAELQQASVAADDIAFASFYYPEGSAASGPG
                     ALQPGDVSFNSVYGLITGELRHGVLNQPIAGGQLRAIDRNSGQSMVSAFSGTTNLSFN
                     PVNGGLFFVPNVAQAIPNGNYTIPVPQGNYDVQVEAVDGQPAAAGNISFTCQIGNFFG
                     QQNFIEEFWNNNSEGAIEREPGDAKNAHVNPGHVKSGVNITTNSVFTIAGFGARTNIG
                     FINAPAGGFIYAQQFPASQVAALNGGNPTLIQAGLFDTNVVDASAPVVFARAMLTTGV
                     INPDTTATIDLVNPLASESLFIAQDGDFAPFYFKNPHDLSEVIRAGIASGSIQNLFLV
                     IQIPPAPFAGVSGQPPLLGLSVQAPIMGRSFLSTNGGLTFNRRNDLNYRISLIASQIP
                     "
BASE COUNT          392 a          541 c          586 g          400 t
ORIGIN      
        1 caccggattt ggcgacacct gcgcaaccgg aagtgctcga ccgcttacgg aatctgggac
       61 gcgatcaagg aaatgcggta gttaaggtcg ttgcggcgat tgaacgtcaa accgccattc
      121 gtcgaaagga acgaccgtcc catgatcggc gcttgaacgc tgaggccgag caaaggcggt
      181 tgtccactca cgcccgcgaa cggcgccggc ggaatctgaa tcaccagaaa caggttctga
      241 atcgatccac ttgcgattcc ggcgcgaatg acttcgctga gatcgtgcgg gttcttgaag
      301 tagaacggcg cgaagtcgcc atcctgcgcg ataaacaggc tctcgctggc aagcggattc
      361 accaggtcga tcgtcgcggt cgtgtcggga ttgatcacgc ccgtcgtcaa catcgccctc
      421 gcaaacacca ccggcgctga cgcatccacc acgttcgtgt cgaacaatcc ggcttgaatg
      481 agagtcggat tgccaccgtt cagcgccgcc acctgcgaag caggaaactg ctgcgcgtag
      541 atgaaaccgc cggccggagc attaatgaat ccaatgttgg tgcgtgcacc aaaacctgca
      601 atcgtgaaca cgctgttcgt cgtgatattc acgcctgact taacgtgtcc cggattcacg
      661 tgcgcgttct tggcgtcgcc aggttcgcgt tcgattgctc cttcgctgtt gttgttccaa
      721 aactcttcga tgaagttttg ctgaccgaag aagtttccga tctgacaggt gaagctgatg
      781 ttgcccgccg ctgccggttg gccgtcaacc gcttcaactt gcacgtcgta gttgccttgc
      841 ggaaccggaa tcgtgtagtt gccgttcggg attgcctgcg ccacgttcgg aacgaagaac
      901 aagccgccgt tgacgggatt gaacgacagg tttgtcgtgc cgctaaaagc actcaccatg
      961 ctttggcccg agttgcgatc gatggcgcga agttgtccgc ccgcgatcgg ttgattcaac
     1021 acaccgtgcc gcagctcgcc cgtgatcaat ccgtagacgc tattgaacga tacatcgccc
     1081 ggttgcagcg cgcctggtcc agaagccgcg gagccttccg gatagtagaa cgacgcaaac
     1141 gcgatgtcgt cagcagccac actcgcttgt tgcagttcgg cagccggatc gccggtgtcg
     1201 atgaacggaa acatcgtcga gccgtcgccg tccgagccgc tgcgctgatt gtcgagcacg
     1261 tgcgagagac cgaatgagtg gccgaactcg tgcgttgcca cgcagctcag atcgactgaa
     1321 cgcgtcaccg tgtccgcctg cagcggatcg atagtgaaac gaagaccgtt gctggttttc
     1381 gtgttgaact gcacgtcgtt gtcgagaatc gttccggctt tgtagaaacc ggccgggaat
     1441 tcgatgtcgc cgtcgttgtc gacgtcggtc gcgacggtga tagctgacga aacatccgga
     1501 tcggcatcgc cgtcgatttg atcgccatct tcgagagtga cgtcggaaat caggtttgtt
     1561 gacggcgatg acgcgatcgc cgagaagccc gccgccgtgc ggaacgagat ttcgttgacc
     1621 atgttgaaac cgaccaggcc ggggttggct accgtcccga cgatctgcat gttgatgtag
     1681 gaggtcggga tgttattcca ccggtccagt gacgcttgca gttcggtggt tgcagcggcg
     1741 accgacagga acgccgggcc gagcggattg ggaatcggat cgagagtatt gttgacccgg
     1801 tattgaaccg ggattgagcg ggcgtcccac ttaatgctga tcacgcgagc cagaaggtga
     1861 ccgggaatcg gtgacggcgg tgcgccggtg agatcaatcg tttcgagacc gccgccggc
//
LOCUS       DASWTX010000854         2229 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_296670, whole genome shotgun sequence.
ACCESSION   DASWTX010000854 DASWTX010000000
VERSION     DASWTX010000854.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2229
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296670"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            279..728
                     /locus_tag="VGD38_12895"
     CDS             279..728
                     /locus_tag="VGD38_12895"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEY0728965.1"
                     /translation="MRGRKTFNVKVLVIIAIVAVAAAVIVYVVANRGSQAGNEITTAS
                     GMKYSDLKVGDGASPQLGQRVQVHYTGWLANGTEFDSSHRRGRPAEFQLGPGLIAGWN
                     EALQTMKVGGKRRIILPPALAYGPTGKPPDIPPNSTLTFDIELLAVR"
     gene            819..1385
                     /locus_tag="VGD38_12900"
     CDS             819..1385
                     /locus_tag="VGD38_12900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728966.1"
                     /translation="MTIIRKGTYTVSVCVLVLLVATGAFAQGKGKGGGGGRGGNSGNA
                     GGPPPGKGSERGLNNASDKSNGRSDTGLDRSRRASSNLRRADDDLRNHPGLPKALHTN
                     ANDLRAGYQSALNVNPDLTFGNYVAATRLGQNLGSRHPNITRDAILGGLASGRSMGRT
                     LQDLGLSERESNEARRRVDDEIKKAKKK"
     gene            complement(1389..>2229)
                     /gene="speB"
                     /locus_tag="VGD38_12905"
     CDS             complement(1389..>2229)
                     /gene="speB"
                     /locus_tag="VGD38_12905"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR01230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008783 - agmatinase activity [Evidence
                     IEA];
                     GO_process: GO:0008295 - spermidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HEY0728967.1"
                     /translation="TWLPMPDTTPNNTEQRAKRALIGIRYDENSSFTKGAADAPPQIR
                     AALRSDAWNLTSENGTDLSGDNVFFDAGDIEPVPGSDMFTLIENSIYTLIADGMAPIS
                     LGGDHSITHPIVRAFARKYKNLSVLHFDAHPDLYDHYQGNRNSHASPFARIMEQKLVK
                     RLVQVGIRTFTQHQREQVQKFGVESIEMHQLNDRLQLEFDSPVYISFDIDALDPAFAP
                     GVSHREPGGLSTRQAIDLIQRMKGKVVGADIVEFNPRMDPLHITGTVCAKLLKEIAAR
                     MLE"
BASE COUNT          482 a          631 c          662 g          454 t
ORIGIN      
        1 cacgcggcga ccgcgagcgg ttctgaaatt agcgaacgcc ttcggcgtca ttctgaaaca
       61 gaggcatcac tgtttttgaa tctgaggcat tactgttttt tggaacagag gcattagtgt
      121 tttagcggcc acttgaacag attccgtaat atctgtataa cggctgtccc aatcacctct
      181 acgaagggac agtttccgtg cctgtaagtc gacagagaaa aataaataga gccaggaaaa
      241 gaccgcgcgt cgcgtcccct tcggcgccgg tggtgccgat gcgtggtcgt aagactttca
      301 acgtcaaagt gctcgtgatc attgcgatcg tggctgtggc tgcggctgtg attgtctacg
      361 tggtggcgaa ccgcgggagc caggcgggca atgaaatcac caccgcctca ggcatgaagt
      421 acagcgacct caaggtcggc gacggcgcat cgccgcaact gggccagcga gtccaggttc
      481 attacactgg ttggctggcg aatggcacag agttcgacag ctcgcaccgg cgcgggcggc
      541 ccgccgagtt ccaactcgga cccggtctca tcgccggctg gaacgaagcg ctccaaacaa
      601 tgaaagtggg cggcaaacgc cggataatcc tgcctcccgc gctcgcttac ggaccgaccg
      661 gcaagccgcc ggacattcca ccaaactcca ccttaacttt cgatatcgag ctgttggcgg
      721 ttagataaaa cacgagacat cgacgcccgc ggtgtagtag attaacggtc tctctcctgc
      781 ttgcccctct caaaataagc gcttgaggag gcgatgaaat gactatcatt cgaaaaggga
      841 cctacacagt ttccgtgtgc gtgctcgtgt tgctcgtggc aaccggggcg ttcgcgcaag
      901 gcaaaggcaa gggaggcggc ggcggtcgcg gcggtaacag cggcaatgcc ggtggaccac
      961 ctccgggaaa aggctccgaa cgcgggctca acaacgcttc tgacaaatca aacggccgct
     1021 cggatacggg cctcgatcgt tcgcgacgcg cgagctcgaa cctgcgccgt gcggacgacg
     1081 accttcgcaa ccatcccgga ttgccgaaag ctctgcacac gaatgccaac gaccttcgcg
     1141 ccggttacca gtctgctcta aacgtgaatc cggatctgac gttcggcaac tacgtcgcag
     1201 caacgagact gggccagaac ctcggatcac gacacccaaa catcacgcgt gatgcgattc
     1261 ttggtggttt ggcttccggc agaagcatgg gccggacgct tcaggatctc ggtttgagtg
     1321 agcgtgagtc gaacgaagcg cgcaggcgcg tcgacgacga gatcaagaag gccaagaaga
     1381 agtagcaact actccaacat tctcgcggcg atctctttca agagcttcgc gcaaacggtg
     1441 ccggtgatgt gcagcggatc catgcgtggg ttgaactcca cgatatccgc tccgaccact
     1501 ttgcctttca tgcgttgaat gagatcgatc gcctggcgag tcgagagccc gccgggttcg
     1561 cgatgcgaca ctcccggcgc aaacgccgga tcgagcgcgt cgatgtcgaa tgaaatgtaa
     1621 accggcgaat caaactcgag ctgcaaacga tcgttcaact ggtgcatctc gatcgactcg
     1681 acgccaaact tctgcacctg ttcgcgctgg tgctgagtga aagtcctgat gccaacctgg
     1741 accaggcgct tcaccagttt ctgttccatg attcgcgcaa acggactggc gtgtgagttt
     1801 cgatttccct ggtagtgatc gtagagatcg ggatgcgcgt cgaagtgcag tacgctgagg
     1861 ttcttgtact tccgcgcgaa cgctctcacg atcggatgcg tgatcgaatg atcgccgccg
     1921 agtgaaatcg gcgccatgcc atccgcgatc aacgtgtaga tagagttttc gatcagggtg
     1981 aacatgtcgc tgccgggcac cggctcgatg tcacccgcgt cgaagaagac gttgtcgccg
     2041 gacagatcgg ttccgttttc actcgtcagg ttccacgcgt cggagcgcag cgccgcgcga
     2101 atctgcggcg gcgcgtccgc ggctcctttg gtgaacgacg agttctcgtc gtaacgaatt
     2161 ccgatgaggg cgcgttttgc gcgttgttca gtgttgttgg gagtagtgtc tggcatgggc
     2221 agccaagtc
//
LOCUS       DASWTX010000855         1805 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_363622, whole genome shotgun sequence.
ACCESSION   DASWTX010000855 DASWTX010000000
VERSION     DASWTX010000855.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1805)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1805)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1805
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363622"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..193)
                     /locus_tag="VGD38_12910"
     CDS             complement(<1..193)
                     /locus_tag="VGD38_12910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728968.1"
                     /translation="MKKSDAATRQPASRLRELTDELQQLEDRLRLGGGPDKIDRQHQQ
                     GKLTARERIEKLLDKDAYVQ"
     gene            complement(207..1511)
                     /locus_tag="VGD38_12915"
     CDS             complement(207..1511)
                     /locus_tag="VGD38_12915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728969.1"
                     /translation="MSKQINRGLALLILFCLCAASLTTRTQAQAGATGTAQNAAIIST
                     TDAVLKETSELRELSILRAVKSGAQSRSEIERMIVKNLDTDTTPAEMHAAEVLLRVFG
                     LAPNDFEYRSFLIKLLTEQVAGYYDPKAQKFYLADWIELEGQKPVMAHELTHALQDQH
                     FDLKRFEKWPKGDSDAELAAHSLIEGDATLAMTLYMAKHPLVALAFIKSLGTQETSSE
                     QFKRAPRALRESLLFPYEAGSNWATQVYRRGGWDLVSKAYSKLPQSSEQIIHPEKYFS
                     YEAPVKVMLPDLKPLLGPTWKRIDTDVNGEWGLYLVLDEYLNNTSASKQAAAGWGGDR
                     YALYQGANSGDVFIAQFTTWDTAVDARDFFVAYLERTWKRYPDAKKTETVSTTERGER
                     HEWKTGGGRGVVELRGSRVLILEGIPAKANTTALLNRIWHQG"
     gene            1611..>1805
                     /locus_tag="VGD38_12920"
     CDS             1611..>1805
                     /locus_tag="VGD38_12920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728970.1"
                     /translation="MTSPAPDDVFGVWHETVLRVRYAETDKMGIVYYANYLVWFEIGR
                     TDYCRARGFSYRDFEENEDAF"
BASE COUNT          374 a          520 c          489 g          422 t
ORIGIN      
        1 cctgaacgta cgcgtcctta tcaagcagct tctcaatacg ctcgcgcgcg gtcagcttgc
       61 cttgctgatg ttgtcgatcg atcttgtctg gtccaccgcc gagccgcagg cggtcttcga
      121 gttgctgaag ttcgtcggta agttcgcgta aacgtgatgc aggttgtcga gtagcagcgt
      181 cagatttttt catgtcgtcg gtttcgttaa ccctgatgcc agatccggtt gagcaacgcc
      241 gtggtgtttg ctttcgccgg gatgccttcg agaatcagca cgcgcgagcc gcgcaactca
      301 acgacgccgc gcccgccgcc tgtcttccat tcgtgacgtt caccgcgttc agtcgtcgaa
      361 acggtttccg tcttcttcgc atcaggataa cgcttccacg ttcgttcaag gtaagccaca
      421 aagaaatcgc gcgcatccac agccgtgtcc cacgtggtga actgcgctat aaaaacatct
      481 ccagaattcg cgccttggta aagtgcgtac cgatccccac cccagccggc cgcagcctgt
      541 ttcgacgctg acgtgttgtt cagatactcg tcgagaacga gataaagtcc ccactcgccg
      601 ttcacgtcag tatcgatccg cttccacgtt ggaccaagca acggcttcag atcgggcagc
      661 atgactttaa ccggagcttc gtacgagaag tacttttccg gatgaatgat ctgctcgctc
      721 gattgcggca gcttcgagta agccttcgag acgaggtccc aaccaccacg ccggtacacc
      781 tgcgtggccc agttcgatcc cgcttcatac ggaaacaaca acgactcacg caacgcacgc
      841 ggcgcacgct tgaactgctc ggaagaagtt tcctgagttc cgagactctt aataaaggcc
      901 agcgccacca gcggatgctt cgccatgtaa agcgtcatcg cgagtgtcgc atcgccttcg
      961 atcaaggagt gagcggcgag ctcggcatcg gagtcgcctt tcggccactt ctcgaaccgc
     1021 ttgagatcga agtgctggtc ctgcagcgcg tgagtcagtt catgggccat caccggcttc
     1081 tgcccttcca actcgatcca gtcagccagg taaaattttt gcgccttggg atcgtaataa
     1141 ccggcgactt gctcggtgag taatttgatc agaaaagacc ggtactcgaa gtcattcggc
     1201 gccaggccaa agacacgcaa cagcacttcg gcggcgtgca tctcggcggg cgtggtatcg
     1261 gtgtcgaggt tcttcacgat catccgctcg atttccgagc gcgactgtgc gccactctta
     1321 acagcccgca aaatcgagag ctcgcgcagt tcgctggttt ccttcagcac ggcgtcggta
     1381 gtggaaatga ttgcggcatt ttgggccgta ccggtcgcgc ccgcctgcgc ctgagtgcgc
     1441 gtggtcagac tggcggcaca gagacaaaac aggatcagaa gcgccagccc gcgattaatt
     1501 tgctttgaca tattgatggt tcactcttat agtccgctaa acgtttacag cctggttcga
     1561 ccggagttca gtccttcgtg cactcagaga gagttgaagg ttttgttcag atgacaagcc
     1621 ccgctcccga cgatgtattc ggcgtttggc acgagacggt gttacgtgtg cgttatgccg
     1681 aaacggacaa gatgggcatc gtttattatg ccaactatct cgtctggttc gaaatcgggc
     1741 gcaccgatta ttgccgggcg cgtggatttt cttaccgcga cttcgaagaa aatgaagacg
     1801 cgttt
//
LOCUS       DASWTX010000856         1712 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_228050, whole genome shotgun sequence.
ACCESSION   DASWTX010000856 DASWTX010000000
VERSION     DASWTX010000856.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1712
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228050"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            52..855
                     /locus_tag="VGD38_12925"
     CDS             52..855
                     /locus_tag="VGD38_12925"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0728971.1"
                     /translation="MQSIIIPAMSILIAEDNMAQRHYLREILEKEFPSHVPVFEAADG
                     EETVKLALGEKPEVCILDIQMPKLSGVKAARAIWRDFPTARIIFWTQFPHEIYINEIR
                     KIVKSVDPPPAYGFIHKNNPESRFLRFVAAVLEDGADMIDPAFKDSFKRPLLTEFEAE
                     ALYYLALGLSNWAIARKCSLSLRGVESRLATLYEKLFVTVAEGTDQEAYEKLAYNIRT
                     RAFFEALRRGLLNSDELEKASTDLEGWLQKDQKRFAEEQKREAASKKNK"
     gene            852..>1712
                     /locus_tag="VGD38_12930"
     CDS             852..>1712
                     /locus_tag="VGD38_12930"
                     /inference="COORDINATES: protein motif:HMM:NF019135.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY0728972.1"
                     /translation="MRSVAWFRLLVSVSCLLLLGGLILTFVERPHAQTGEPLPQASPS
                     PSPSPSPSPSPTPITGLHQWGAVTLFHGLPSDRVRAIAQTSDGSMWFGTEAGLARFDG
                     RRTQAVNDSALPAGRVLALQIDQDGAMWVGTESGAARFSGSTFERIKETSTQAVSAIV
                     TTTDGVTYMSTEQGNVFECRVRAGVAVETRPLLSEPLRSADRERTGPLTITSITNSDN
                     RLFIGTLSRGVLEIENGAVKEPPTRPATFFVNALEHGKDGKLWAGSRARKEEPGAFTG
                     TEPSNLKRTEA"
BASE COUNT          367 a          510 c          510 g          325 t
ORIGIN      
        1 ggggcatgat agcacgagcc ggaaatgtgg cgagccacgt tgttacttcg attgcagagc
       61 attattatcc ccgcgatgtc gatactgatt gccgaagaca acatggccca gcgccactac
      121 ctgcgcgaga tactcgaaaa agagtttccg tcgcacgtcc ccgtgtttga agccgccgac
      181 ggcgaggaga ccgtgaagct cgcgctcggc gagaagccgg aggtttgtat cctcgacatc
      241 cagatgccga agctctcggg cgtgaaagcc gcgcgcgcga tctggcgcga cttcccaacc
      301 gcgcgcatca tcttctggac gcagtttcct cacgagattt acatcaacga gattcgcaag
      361 atcgtgaagt cggtcgatcc gccaccggcg tacggcttca tccacaaaaa caatcccgaa
      421 tcgcgttttc tgcgtttcgt cgcggcggtg ctcgaagacg gcgcggacat gatcgatcca
      481 gcgttcaagg actcgttcaa gcgcccgttg ctgacggagt ttgaagcgga agcgctttac
      541 tatctcgcgc tcggtctttc gaattgggcc atcgcgcgca agtgttcgct gagcttgcgc
      601 ggcgtcgaaa gccggctggc gacgctttac gagaaactct tcgtgactgt cgccgaaggc
      661 accgatcagg aagcgtacga gaagctcgcc tacaacatcc gcacgcgcgc gttttttgaa
      721 gcgcttcgcc gtgggctgct caacagcgac gaactcgaga aagcgtcaac cgatctcgaa
      781 ggctggctgc aaaaggatca gaagcgcttt gccgaggaac aaaaacgcga agcggcgtcg
      841 aagaaaaata aatgagatcc gtggcatggt ttcggctgct tgtgtctgtc tcctgccttt
      901 tactactcgg cggtctaatt ctcactttcg ttgagcggcc acacgcgcaa acgggcgagc
      961 cgctaccgca agcctcgcct tcaccgtcgc catctccgtc gccttcacca tcgccaacac
     1021 cgatcacggg cctgcatcag tggggcgcgg tcacgttgtt tcacggactg ccgtcggatc
     1081 gtgtgcgtgc gatcgcgcag acgagcgatg gctcgatgtg gttcggaact gaagccggtc
     1141 ttgcgaggtt tgacgggcgc aggacgcaag cagtcaacga ttccgcattg cccgccggac
     1201 gcgtgctcgc gttgcaaatc gatcaggacg gcgcgatgtg ggtcggcacc gaatcgggcg
     1261 cagcgcgctt cagcggcagc acgtttgaac gaatcaaaga gacttcgacg caagccgttt
     1321 cggccatcgt cacgacaact gacggcgtca cgtacatgtc gaccgaacag ggcaacgtgt
     1381 ttgagtgtcg cgttcgtgcg ggcgtcgcgg tggaaacacg acccttgctg agcgagccgt
     1441 tgcgcagcgc tgatcgcgag cggactggcc cactgacgat cacgagcatt accaactccg
     1501 acaatcgcct cttcatcggc acgttgagcc gcggcgtact cgaaatcgaa aacggcgcgg
     1561 tgaaagaacc gcccacgcga cccgcgacgt ttttcgttaa tgcactcgag cacggcaaag
     1621 atggaaagtt gtgggcgggc tcacgcgcgc gcaaagaaga acccggcgcg ttcaccggca
     1681 cggaaccgtc gaacctgaaa cgcactgaag cc
//
LOCUS       DASWTX010000857         5382 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_77142, whole genome shotgun sequence.
ACCESSION   DASWTX010000857 DASWTX010000000
VERSION     DASWTX010000857.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5382)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5382)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5382
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77142"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1275
                     /locus_tag="VGD38_12935"
     CDS             <1..1275
                     /locus_tag="VGD38_12935"
                     /inference="COORDINATES: protein motif:HMM:NF012700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Smr/MutS family protein"
                     /protein_id="HEY0728973.1"
                     /translation="ELCEPPALVLLDEVGTGTDPEEGSALGVAVVDHFRRVCNAHVIA
                     TTHYSGLKMYAGNETGVLNASVEFNEKTLQPTYRLIVGVAGASSGLEIARRFGVPKTI
                     VDAAVGAVKDSSLQATEYLRRIKREAEGAEALRLALEEERVAVAEKYASLDKEAAKRE
                     RERQASFEQVAQRMVAELEKRGRELIGKIADRAERTRAEREAQRHVGEIKRAAQRAAQ
                     AVAETKSGTDPSRDVRVVRDGQVVVRAAGEPIQVENETPEYVTAAPREIVVGDKVKLL
                     SFGSVGIVDQIKDGYAEVRVKALRFRENLENLELVEQQPTPKPQQGKLEKLRRSSGTE
                     IHLAAAEQTAKSELNVIGQTTDEAVDAVDKFLDEASLASLSQVRIVHGHGTGALRRAI
                     AGLLGGHPHVARFVSAPPDQGGAGATLVELRQ"
     gene            1303..3132
                     /gene="dnaG"
                     /locus_tag="VGD38_12940"
     CDS             1303..3132
                     /gene="dnaG"
                     /locus_tag="VGD38_12940"
                     /inference="COORDINATES: protein motif:HMM:TIGR01391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEY0728974.1"
                     /translation="MRYPQTFIDDLKRQADIVRVIQDYVQLKKKGANWMACCPFHKEK
                     TPSFSVSPVKEIFFCFGCHKGGSVFNFVMEIERVSFPEAIRIVADKIGMPLPKMVDDG
                     RFEARRQEADDVIQLNSWALDWWQQQLESSKEARIAREYLVQRELTEETQKTFRLGYA
                     PDSWDALSTFLRQKGATQQQIERSGLVVKKDEDRPGSYDRFRGRLMFPVLDVQNRPIA
                     FGGRALKPDDNAKYINSPETVAYVKGRNLFGLNLTRDEIRRQGFAILVEGFLDLIVPF
                     QAGVRNVVASLGTALTSEQAKLLSRFARKVVVNYDGDRAGVQAAKKSIEILLAEDIEV
                     KVLVLPDNADPDEFIRKFGVTEYQRRRAQAQPHIQFVIENALRDRSLHRPADKAEAVE
                     EVLPYIRAVNSRIQKREYFDMAMDSLGIDRENVNTSTWRRELWQAVRDNRPTRSSAVQ
                     VAAKQKKVSAAEQRLLGLMLADANLRHQVLPMLKKGDYEDLATAPLFEALLALDREGT
                     EIDFDALISKTEGDEFAASVVPMVMMNSSLHGSNEHYVAEECVSTFRRMKIEHRIEEL
                     KLELLAAERENDQEKMVRLVTERIELDTQRQLMLQPAREVTAK"
     gene            3150..4874
                     /gene="rpoD"
                     /locus_tag="VGD38_12945"
     CDS             3150..4874
                     /gene="rpoD"
                     /locus_tag="VGD38_12945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012607388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HEY0728975.1"
                     /translation="MEDKDRDDVMERLLELGGDKKYLTFDDLNRELPDNVVSPDDIED
                     VLQKLEGSNIPVADSDERLLEQAAATISDDEEDGLDEDVELDLSAGALEKTNDPVRLY
                     LREMGVVPLLTREGEVAIAKRIERGQLKTQKAIARSPIAVRELLRIGEDLKTQKINIR
                     ETVTFSEQAELTGDEDKAEEYRAWTIEGIQHIEELANQGLKELEKLRAEQKITHGKKS
                     KKLTKLKRKVARTRLEIAQEIGRLNLTERARQRLINAIRAVQKSVREAEREIDSCNEK
                     LGRKRIKPEEQRELRRRILTAKKRLLQIEIDNFVGPLEIKRSLVAIITGEQQTGQAKR
                     ELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEWRRGYKFSTYATWWI
                     RQAITRAIADQARTIRIPVHMIETINKLIRTSRSLVQELGREPTSEEIARKMDIPVSK
                     VRKVLKIAQEPISLETPIGEEEDSHLGDFIEDKSILNPADAVVASNLREITDEVLATL
                     TPREEKVIKMRFGLGTTGSEHTLEEVGQHFAVTRERIRQIEAKALRKLRHPSRSRKLK
                     AFLDGAPR"
     gene            complement(4879..5262)
                     /locus_tag="VGD38_12950"
     CDS             complement(4879..5262)
                     /locus_tag="VGD38_12950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728976.1"
                     /translation="MQTRRSTERGSANLKFLIVMLILGACAYAAYLYIPVAYNAYAFK
                     DLMQHYVDVASAEGKTPAATAEHLIRNFNDYGIPQDAVVTPVKRDNRLEVRVQFVKPI
                     EFPGYTYNYEFDETVKSTAFLDFSK"
BASE COUNT         1312 a         1477 c         1589 g         1004 t
ORIGIN      
        1 gaattgtgcg agccgcccgc gctcgtgttg ctcgacgaag tcggcacggg aaccgatccc
       61 gaagagggat cggcgctcgg agtcgcggtt gtggatcatt ttcggcgggt gtgcaacgcg
      121 cacgtcatcg cgacgacgca ttacagcggg ctcaagatgt acgccgggaa tgaaacgggc
      181 gtgctgaatg cgagtgtcga gttcaacgaa aagacactgc aaccgaccta tcgtttgatt
      241 gtcggcgtcg ccggtgcttc gtcaggtttg gagatcgcgc ggcgctttgg tgttcccaaa
      301 acgattgtcg atgcggcggt gggcgctgtg aaagattcgt cgttgcaggc gacggagtat
      361 ctgcggcgga tcaaacgcga agcggaaggc gctgaagcgt tgcggctcgc gttggaagaa
      421 gaacgcgtcg cagttgcaga gaagtatgcg tcactcgaca aagaagccgc taaacgcgaa
      481 cgcgaacgcc aggcgtcgtt tgagcaggtc gctcagcgca tggttgcgga acttgaaaaa
      541 cgcgggcgcg aactcatcgg aaagatcgcg gatcgcgccg agagaactcg tgcggaacgt
      601 gaagcgcagc gccacgtcgg agagataaag cgcgcagccc aaagggctgc gcaagcagtt
      661 gcagaaacca aatcaggaac tgatccttcg cgcgatgtcc gggtcgtgcg cgacggacaa
      721 gtcgtcgtac gtgcagctgg cgaaccaatc caggtcgaaa atgaaactcc cgaatatgtc
      781 accgccgcgc cgcgcgagat agtcgtcggc gacaaagtga aactgctctc gttcggttcg
      841 gtcggcatcg tggaccagat caaggacggt tacgccgagg tgcgtgtgaa ggctttacgc
      901 ttcagagaaa acctcgagaa ccttgagctc gtcgaacaac aacccactcc aaaaccgcag
      961 caaggcaaac tggaaaaact gcgccgctcc tccggcactg aaatccatct tgccgccgcc
     1021 gagcaaacgg ccaaatcgga gttgaacgtc atcggccaga cgactgacga agcagttgac
     1081 gcggtcgata aatttctcga cgaagcatca ctcgcgagtc tcagccaggt gcgcatcgta
     1141 cacggccacg gcaccggcgc gttgcgtcgc gcgatcgcgg gcctgctcgg aggtcatcct
     1201 catgtcgctc ggtttgtttc cgccccaccc gatcagggcg gtgctggtgc aactctcgtc
     1261 gagttgagac aatagcaaca gcttacacgg atcacggatc gaatgcgtta cccccaaact
     1321 ttcatcgacg atctcaaacg tcaagccgac atcgtccgcg tcattcagga ctacgtgcag
     1381 ctcaagaaaa agggcgcgaa ctggatggcg tgttgtccgt ttcacaaaga aaagacgcct
     1441 tcgttctctg tcagtccagt aaaagagatc ttcttctgtt ttggttgtca caaaggcggc
     1501 tcggtcttca acttcgtgat ggagatcgag cgcgtcagct ttcccgaagc gatccgtatt
     1561 gttgccgaca agatcggcat gccgttgccg aagatggtcg acgacggccg cttcgaagcg
     1621 cgccgccagg aagccgacga cgttattcaa ctcaactcgt gggcgttgga ttggtggcaa
     1681 cagcaactcg aatcgagcaa ggaagcgcgt atcgcgcgtg agtacctggt ccaacgcgag
     1741 ctgacggaag aaacacagaa aacctttcgc ctcggctacg cgcccgacag ttgggacgcg
     1801 ctctcgacct tcttgcgcca gaaaggcgcc acgcaacaac agatcgagcg cagcggtttg
     1861 gtagttaaga aggacgaaga tcgtcccggt tcttacgatc gttttcgtgg ccgcttgatg
     1921 tttcccgttt tggacgtgca aaaccgcccg atcgcattcg gcggacgcgc gctgaaaccg
     1981 gatgacaacg ccaaatacat caactcaccg gaaactgttg cttacgtaaa aggccgcaac
     2041 ctgtttggat tgaacctgac gcgcgatgag attcgccgcc aggggtttgc gattctcgtc
     2101 gagggatttc tcgatctaat cgttccgttc caggcaggcg tgcgcaacgt cgttgcgagt
     2161 ttgggaacag cgctgacgag cgaacaggcg aagttgctaa gcaggtttgc gcgcaaagtt
     2221 gtagtcaact atgatggcga ccgcgcgggc gtacaagcag cgaaaaagtc gatcgagatc
     2281 ctcctcgccg aggacatcga agtgaaggtg ctcgtacttc ccgacaacgc agatcccgac
     2341 gagttcattc gaaagtttgg tgtaactgag tatcagcggc gacgcgcaca ggctcaacca
     2401 cacatacaat tcgtaatcga aaacgcttta cgtgaccgca gcctgcaccg gcccgcggac
     2461 aaagctgaag cggtcgaaga agttcttcct tacatacggg cggtcaacag tcgcattcag
     2521 aagcgcgagt attttgacat ggcgatggat tctctcggaa tcgatcgcga aaacgtcaac
     2581 acgtccacat ggcggcgcga gttgtggcag gccgtgcgcg acaaccgtcc gacgcgatcc
     2641 agtgcggtcc aagtggccgc gaaacagaag aaagtcagcg ccgcagaaca gcgtttgctt
     2701 ggattaatgc tggctgacgc caatctgcga caccaggtcc tgccgatgtt gaaaaaagga
     2761 gactatgagg acctggcgac cgcgccgctt ttcgaagcat tgctggccct cgaccgcgaa
     2821 ggcacagaaa ttgattttga cgcattgatc agtaagaccg agggcgacga gttcgcggcg
     2881 agcgttgtgc cgatggtgat gatgaattcc tcgcttcacg ggtcaaacga gcattacgtc
     2941 gccgaagaat gcgtctcgac gttccgccgg atgaagatcg agcaccgcat cgaagagttg
     3001 aaactggaat tgctagcagc cgagcgagaa aacgaccagg aaaagatggt caggctggtg
     3061 accgaacgca tagaactcga cacccagcgg caattgatgc tgcaacctgc ccgtgaagta
     3121 acggcgaagt aacggctaaa taattgatta tggaagacaa ggatcgcgac gacgtcatgg
     3181 aacgtctgct cgaactgggc ggcgacaaaa agtacctgac gtttgacgac ctcaatcgcg
     3241 aattgcccga caatgtcgtc tcgccggacg acatcgaaga cgtactccag aaactcgaag
     3301 gctccaacat ccccgtcgcc gacagcgacg aacgcctcct cgaacaagcc gcagcgacaa
     3361 tttccgacga cgaggaagac ggtctcgacg aagacgtcga actcgacctt tcggccggcg
     3421 cgctcgaaaa aaccaacgat ccggtgcggt tgtatttgcg cgagatgggc gtggttccgt
     3481 tgctgacgcg cgaaggcgaa gtcgcgatcg cgaagcgaat cgagcgcgga cagttaaaga
     3541 cgcaaaaggc catcgcgcgc tcgccgatcg ccgtgcgcga gttgctcagg atcggcgaag
     3601 atctcaaaac gcagaagatc aatatccgcg agacggtcac cttttccgaa caggccgagc
     3661 ttaccggcga cgaagataag gccgaggagt atcgcgcctg gaccatcgag ggaattcagc
     3721 acatcgaaga gctcgctaac cagggactaa aggaactcga aaaactgcgc gcggagcaga
     3781 aaataactca cggcaagaag agcaaaaaac tcacgaagct aaagcgtaaa gtcgcgcgga
     3841 cgcggctgga aatcgcgcag gaaattggtc gcctgaacct tactgagcgg gctcgtcagc
     3901 gtttgatcaa tgcgattcgc gcggtgcaga aatcggtgcg cgaagccgag cgcgagatcg
     3961 acagttgtaa cgagaaactg ggccgtaaac gcatcaagcc ggaagagcag cgtgaactgc
     4021 gccgccgcat cctgaccgcg aaaaaacggc tgctgcagat cgagatcgac aacttcgttg
     4081 ggccactcga gatcaagcgt tcgctggtgg cgatcattac cggcgaacag cagacgggcc
     4141 aggcgaaacg cgagcttgtg gaagcgaatc tgcgtttggt ggtttcgatt gcgaagaaat
     4201 acacgaatcg tggccttcag tttctcgacc tgattcagga aggcaacatc gggttgatga
     4261 aggcggtcga caagtttgaa tggcggcgtg gttacaagtt ctcgacgtac gcgacgtggt
     4321 ggatccggca ggcgatcacg cgcgcgattg cggaccaggc gcgcacgatt cgcattccgg
     4381 tgcacatgat cgaaacgatt aacaagctga tccggacctc gcgttcgctg gtccaggagc
     4441 tcggccgcga gccgacgagc gaagagatcg cgcggaagat ggatattccg gtttcgaaag
     4501 tgcgcaaagt cttgaagatc gcgcaggagc cgatctcgct ggaaacaccg attggcgagg
     4561 aagaggattc gcacctcggc gacttcatcg aagacaagtc gatcctgaac ccggcggatg
     4621 ctgttgttgc ctcaaacctg cgcgagatta ccgacgaagt gctggcgacg ctcacgccgc
     4681 gcgaagaaaa agtgatcaag atgagattcg ggctcggcac gactggctcc gaacacacgc
     4741 tcgaagaagt cggtcaacac ttcgccgtca cccgcgaaag gatcaggcag atcgaagcga
     4801 aagcgctccg caaactgcgc cacccctcac gctcccgaaa actcaaagcg ttcctcgacg
     4861 gcgccccacg ttaattaatt atttactgaa atcgaggaag gctgtgctct tgacggtttc
     4921 gtcaaactcg tagttgtagg tgtatcccgg aaattcaatc ggcttcacga actgaacccg
     4981 gacctcgagg cggttgtcgc gtttcacagg cgttacgacc gcgtcctgcg gaatgccgta
     5041 atcgttgaag ttccttatca aatgttccgc cgtcgccgcc ggcgtcttgc cctccgccga
     5101 cgccacgtcg acgtagtgct gcatcaggtc cttgaaggca tacgcgttgt aggctaccgg
     5161 gatgtagaga tacgcggcgt aagcacacgc gccgagtatc aacatcacga tcagaaattt
     5221 gagattcgcg ctgccgcgtt cagttgatct tcgcgtttgc attaatgacc actctcggtt
     5281 ggtttcttcg gccgctgcaa tcccgctcgc agcgactggc gcaatacttt cgcactgatg
     5341 agcccaccgt cgaagatctt cggcaggccc accccttcaa gc
//
LOCUS       DASWTX010000858         1608 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_100788, whole genome shotgun sequence.
ACCESSION   DASWTX010000858 DASWTX010000000
VERSION     DASWTX010000858.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1608
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100788"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1018
                     /locus_tag="VGD38_12955"
     CDS             <1..1018
                     /locus_tag="VGD38_12955"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEY0728977.1"
                     /translation="CLPYISALVETSLPLAALIITAQYVGPAYALLTPAPFVYPLLIV
                     LSTLRLDARLSVFTGVVAALQYLVLSLVFIAFTQPPLVEPLVSTAPPHIVKSFLLLLM
                     GFAAGAVTTQIKKRILNSFEMVEERNRISRTFGEYVSPIVMNKLLTLKPDLRSEKREV
                     CVMFLDIRNFTSFAEKRSPEEVVSYLESLFEFMIEIVNRHHGVINKFLGDGFMAVFGA
                     PLSEGGDCLNGVAAAREILMRVEEEVASGNVLPTTVGIGLHAGEAVTGSIGSSLRKEY
                     TVIGDVVNLASRIEKLNKKYQSRLLVSENVWRSLEDDSTDAIPMGNVRVQGREKGIGI
                     YQLA"
     gene            1145..1582
                     /locus_tag="VGD38_12960"
     CDS             1145..1582
                     /locus_tag="VGD38_12960"
                     /EC_number="1.11.1.29"
                     /inference="COORDINATES: protein motif:HMM:TIGR03562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA];
                     GO_process: GO:0006972 - hyperosmotic response [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0033194 - response to hydroperoxide
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEY0728978.1"
                     /translation="MPTRKAEAEWKGNLAEGEGTLKVGSGAFEGPYSFKSRFEEGQAA
                     TNPEELIGAAHAGCFTMALTAALSRAGIKPTRIHTEARVTLDKVGDAFSITKIELATE
                     AEIPGVDDAAFQNYAKGAKEGCPVSKALAGTEIHLNAKLLNAG"
BASE COUNT          358 a          427 c          487 g          336 t
ORIGIN      
        1 gtgtttgccg tacatcagcg cgctcgtgga gacgagtctg ccgctcgccg cgctgatcat
       61 caccgcgcag tacgttgggc cggcttacgc gttgttgaca ccggcgccgt tcgtctatcc
      121 gttgctgatc gtgctttcga cgttgcggct cgatgcgagg ctgtcagtgt tcacgggtgt
      181 ggtcgcggcg ctgcagtacc tcgtgctgtc gctggtcttt atcgctttta cacagccgcc
      241 gctcgttgag ccgctcgttt cgaccgcgcc gccgcacatc gtgaagagtt ttctgctgtt
      301 gctgatgggc ttcgcggcgg gcgcagtcac gacgcagatc aagaagcgca ttctcaactc
      361 gttcgagatg gtcgaagaac gcaaccgcat cagccggacg tttggcgagt acgtgtcgcc
      421 gatcgtgatg aacaagctgc tgacgttgaa acctgatctg cgcagcgaga aacgcgaggt
      481 gtgcgtgatg tttctcgaca tcagaaactt cacgagcttc gcggagaagc gttcgccgga
      541 agaagtcgtg agttatctcg agtcgctttt cgagttcatg atcgagatcg tgaatcgtca
      601 tcacggcgtc atcaacaagt ttctcggcga tgggttcatg gcggtgtttg gcgcgccact
      661 ttcggaaggc ggcgattgtc tcaacggcgt tgccgcggcg cgcgagatac tgatgcgtgt
      721 tgaagaagag gtcgcgtcgg gaaatgtttt gccgacgacg gtgggaatcg ggcttcacgc
      781 cggtgaagca gtgacgggaa gcatcggatc gtcgttgcgg aaggaataca cggttatcgg
      841 cgacgtcgtg aatctcgcgt cgcggatcga gaagttgaac aaaaaatatc agtcgcggct
      901 gctcgtttca gaaaacgtct ggcggtcgct ggaagacgac tcaaccgacg ccatcccgat
      961 gggcaacgtg cgcgtgcagg gacgcgaaaa aggaatcggc atttatcagc ttgcgtaaag
     1021 ctggcgtatg atggttgacg attcatagcc acaaagaagc acaagaggca caagtgttag
     1081 caaacccttc ttgtgcttct tgtgcctctt tgtggcccca aatacgaaca acggaaagga
     1141 aactatgcca acacgtaaag cggaagctga atggaaagga aatctcgcgg agggtgaagg
     1201 aacgttaaag gtcggcagcg gagcgttcga aggtccttat tctttcaagt cccgtttcga
     1261 agagggacag gccgcgacga accctgaaga actgatcggc gcggcgcacg caggttgttt
     1321 cacgatggcc ctgaccgcgg ccctctcgcg cgccggcatc aaaccgacgc gcattcatac
     1381 tgaagcacga gtcacgctcg acaaagtcgg cgacgcattt tcgatcacca agatcgagct
     1441 cgcaaccgaa gccgagattc ccggcgtcga cgacgccgcg tttcaaaact acgccaaagg
     1501 cgctaaggaa ggctgcccgg tttcaaaggc tctcgccggg acagagattc acttgaacgc
     1561 gaaactactg aacgcaggtt agccaacacg atctgctgca aaaccaac
//
LOCUS       DASWTX010000859         2296 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_384966, whole genome shotgun sequence.
ACCESSION   DASWTX010000859 DASWTX010000000
VERSION     DASWTX010000859.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2296
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384966"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2289)
                     /locus_tag="VGD38_12965"
     CDS             complement(<1..2289)
                     /locus_tag="VGD38_12965"
                     /inference="COORDINATES: protein motif:HMM:TIGR01733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEY0728979.1"
                     /translation="MLEDSGAVALLIAGQPAAELPEHTLRTIRLDACESETATESTEN
                     LPPTATADNLLYVIYTSGSTGRPKGVAMRHGPLTNLITWQTRHATPAAARTLQFTSLS
                     FDVSFQEIFTTWCSGGTLVMISEETRRDPERLLNVLVDAEVERLFLPFVALQQLAEVA
                     ARKDLTSARLKEVLTAGEQLQVTSRVVEMFSKLPGSSLHNQYGPAEAHVVTALPLEGA
                     PQLWPSLPSIGRPVDNARIYVLDARLRTVPIEVAGELYIGGDVLARGYLNRPDLTAAR
                     FIPDPFATESGARVYRTGDSASYLRDGQIEFLGRSDQQLKIRGFRIELGEIETVLATH
                     DAVREAVVTADVLEGGAKRLIAYLVLHPGAQSSVHEVRRFLAERLPGYMVPAAFVIMD
                     QLPLTPSGKVNRRALPSPSTFERDVKESVARGEVEELLCGTIAQCLQIEHAGRDDNYF
                     DLGGHSLLATQVISRIREAFGVELPLRGLFESQTIAEMADRVDELLRAQSGTTMQPIG
                     SVERDGLIPASFAQQRLWFLDQLEPNSALYNIPLAVRMQGRLDVTALERTLNEIVRRH
                     EVLRTTFETFKGQPIQVIAPAVDIALPHIDLTGFDIAEQESVVQELSREEARRPFDLS
                     RDLLVRATLLELSDEDHVVLFTMHHIISDGWSMGVFIKEVTALYEAFSENRSSPLPPL
                     PVQYADFAVWQKEWMQGEVLERQLSYWKKQLGGSPALVRLPADRPQLAKVDHAGALLP
                     FALAADASRSLKTFSRQQNVTLF"
BASE COUNT          480 a          732 c          648 g          436 t
ORIGIN      
        1 gaacagcgtc acgttttgtt gccggctgaa agtcttaagc gatcggctcg catccgcagc
       61 gagcgcaaac ggaagcagag ctcccgcatg gtccaccttc gccaactgcg gacgatccgc
      121 cggcaggcgc acgagcgcgg gcgaaccgcc gagctgtttc ttccaatacg aaagctgtcg
      181 ctcgagcacc tcaccctgca tccattcctt ctgccacacg gcaaagtcgg cgtactgaac
      241 gggcagcggc ggcagtggtg aagaacggtt ctcggaaaac gcttcgtaaa gggctgtgac
      301 ctctttgata aatacgccca tggaccagcc gtcagagatg atgtgatgca tcgtgaagag
      361 caccacgtga tcttcgtcgc taagttccag caacgtggcg cgcacgagca ggtcgcgcga
      421 gaggtcgaaa ggccgccgcg cttcttccct cgacaactcc tgcacgactg attcctgttc
      481 agcgatgtcg aaccccgtga ggtcgatgtg cggcaacgca atgtccaccg caggcgcaat
      541 aacctgaatg ggctggcctt tgaacgtctc gaaagtcgtg cgaagcactt catggcggcg
      601 cacgatttca ttcaacgttc gttcaagcgc cgtcacatcg agccggccct gcatgcgcac
      661 cgcgagcggg atgttgtaga gcgcactgtt cggctccagt tggtccaaaa accagagccg
      721 ctgctgcgcg aacgacgcgg gaatcaatcc atcgcgttcg accgacccga tcggttgcat
      781 cgtcgttccg ctctgcgcgc gcaagagttc gtcgacacga tccgccatct ccgcaatagt
      841 ctgtgactcg aagagcccac gcagcggcaa ctcgacgccg aacgcttcgc ggatacgcga
      901 gatgacctgc gttgcgagca gtgaatgccc gcccagatcg aagtagttgt cgtcgcggcc
      961 ggcgtgctcg atctgcaaac actgcgcgat cgtgccgcac aacaattctt ccacctcgcc
     1021 gcgcgcaaca ctctctttca cgtcgcgttc gaacgtggaa gggctcggca gagcgcggcg
     1081 gttgactttg ccgctcggcg tgagcggcag ttggtccatg atcacaaacg ccgccggaac
     1141 catgtaaccc ggcagtcgct ccgcgagaaa gcggcgcacc tcgtgcaccg aagactgcgc
     1201 acccggatgc aataccagat aagcaatcag ccgcttcgcg ccgccttcta aaacgtcagc
     1261 agtgacaacc gcctcacgca ccgcgtcgtg cgtggcaagc acagtttcaa tctcgcccaa
     1321 ttcgatgcga aaacctcgaa tcttcaactg ctggtcggac cgaccgagaa actctatctg
     1381 gccgtcacgc agataactcg ccgaatctcc cgtgcgataa acacgtgctc cgctctctgt
     1441 tgcaaacgga tcagggatga agcgcgcggc ggtcaagtcg ggccggttga ggtaaccacg
     1501 cgcgagaaca tcgccgccga tgtaaagctc acccgccacc tcgatcggca cggtccgcag
     1561 gcgtgcgtcg agcacgtaaa tccgtgcgtt atccactggc cggccaatcg acggcagtga
     1621 cggccaaagc tgcggcgccc cttcaagcgg caacgccgtg acgacgtgcg cttcggctgg
     1681 tccatactgg ttgtgtaacg aagatcccgg cagcttgctg aacatctcaa caactcgaga
     1741 ggtcacctgc aactgctctc ccgcggtgag aacctctttc aagcgcgcgc tcgtgaggtc
     1801 ctttcgcgca gccacctcgg ccaactgttg cagtgcgaca aacggaagga acagccgctc
     1861 gacctcagca tcgacgagca cgttcaagag cctctccgga tctctacgcg tctcctctga
     1921 aatcatcacg agcgtgccgc cggagcacca cgtcgtgaat atctcctgaa atgagacatc
     1981 aaagctgagc gaagtgaact gaagcgtgcg ggccgccgcc ggtgtcgcat ggcgtgtctg
     2041 ccacgtgatc aggttggtga gcggcccgtg tctcatcgca acgcctttgg gcctgcccgt
     2101 cgaacccgac gtgtagataa cgtagagcag gttgtctgcc gttgctgtag gcggcaaatt
     2161 ttccgtgctc tctgttgcgg tttcgctttc acacgcatca agacggatgg ttctcagcgt
     2221 atgttccggc aactccgcag ccggttgtcc ggcaattagc aaagccaccg cgccgctgtc
     2281 ttccagcatt aacttc
//
LOCUS       DASWTX010000860         2569 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_422531, whole genome shotgun sequence.
ACCESSION   DASWTX010000860 DASWTX010000000
VERSION     DASWTX010000860.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2569
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422531"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(37..414)
                     /locus_tag="VGD38_12970"
     CDS             complement(37..414)
                     /locus_tag="VGD38_12970"
                     /inference="COORDINATES: protein motif:HMM:NF021486.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2203 domain-containing protein"
                     /protein_id="HEY0728980.1"
                     /translation="MKLFTIQEANALLPSVRTIVGKIQQAHRNVSRYREEARKASEAA
                     ERGGGGISAGVVYATALTELTGRIAELEILGVQLKDFERGLVDFPSLRDGRVVLLCWQ
                     MGEGDELEWWHDVDAGFAGRTPL"
     gene            complement(426..1172)
                     /locus_tag="VGD38_12975"
     CDS             complement(426..1172)
                     /locus_tag="VGD38_12975"
                     /inference="COORDINATES: protein motif:HMM:NF014045.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEY0728981.1"
                     /translation="MNNNNNNFDPTNNVSWQLGHRGRVAVFIDGNNLFHAARFHNIDI
                     DYNKLLRVLLGDGRLLRAFFYTGVDIGAERQQGFLLWMRRNGFRVIQKELKTFYDGTR
                     KANLDVEIAVDMLSLAGKYDTAVLVSGDEDFVYAVNAVAYKGCRVEIAGFRSNTAPKL
                     IDVSDYFIDLGEIADKVRKEISHVPRYDERDLHDHLPPHYLHDQMHVPKTQPDAFQTA
                     MRVVLETEIDEEEAAEFQAATEFIRITDEH"
     gene            complement(1258..2073)
                     /locus_tag="VGD38_12980"
     CDS             complement(1258..2073)
                     /locus_tag="VGD38_12980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728982.1"
                     /translation="MFSHTITSKYTVALLVVVAAFASGACAALQPPDADGPRSNMPPY
                     PIGLADPAARLEEASVAWFQLSQHYGLADRTAANLNPFTGTIESLPPNAGPIALPKVG
                     AEPEQTEEQVRESLRRFINEWRPLIGAEPNQLSLVERADEASGIRLARYEQRPFRYPL
                     RGEFGKLVIRFSADRQVISLSSTCIPNAERLQASIAGLTPKINADQAVDHVKSQVPAN
                     ASLTARELVVYARSGTDQSNGLQLYLAWEIQVSNGPMKAIYLDAISDQVLAVA"
     gene            2266..>2569
                     /locus_tag="VGD38_12985"
     CDS             2266..>2569
                     /locus_tag="VGD38_12985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728983.1"
                     /translation="MYCSVPLPLTESSARLRKPILRRLEKHQLGYNTIYLPSAQEFSA
                     EAIGEAAALLKLKEPELKRILAEGVPLPLARTASREEAELIVDRLQGLGVRIVMLVV"
BASE COUNT          545 a          738 c          700 g          586 t
ORIGIN      
        1 agaaaataaa gcagggcttg gagttagtaa ctacgattag agaggagttc ttcccgcgaa
       61 gccggcatcg acgtcgtgcc accattcgag ctcgtcgcct tcgcccattt gccagcacag
      121 taggaccacg cggccgtcgc gcaacgaggg gaagtcgacc aggccgcgtt cgaagtcctt
      181 gagttggacg cccagaatct ccagttccgc aatccgcccg gtcaattccg tcaaagcagt
      241 cgcgtaaacc acaccagccg aaatcccccc accgcctctt tccgcggctt cggacgcttt
      301 tctcgcctct tcccgataac gtgagacgtt ccggtgcgcc tgctggattt tgccgacaat
      361 ggtccggacg ctcggtaaca gagcgttggc ttcctgaatg gtgaagagtt tcatctctcg
      421 agacgctagt gttcgtcagt aatcctgatg aactcggtgg ccgcttgaaa ctccgcggct
      481 tcctcctcgt cgatctccgt ctctaatacc actcgcatcg ccgtttgaaa agcgtcgggc
      541 tgggtcttcg gcacgtgcat ctggtcgtgc aggtagtgcg gcggcagatg gtcgtgcaga
      601 tcgcgctcgt cgtaacgcgg cacgtgcgag atctctttcc gcactttgtc cgcgatctcc
      661 ccgaggtcga tgaagtagtc agacacgtcg atcagcttcg gcgcggtgtt cgatctgaac
      721 ccggcaatct ccacgcggca gcccttatac gcaaccgcat tcacggcgta gacaaaatct
      781 tcatcgcccg acacgagcac cgcggtgtcg tacttacccg cgagcgacaa catgtcgaca
      841 gcgatctcca cgtcgagatt tgctttgcgt gtaccgtcgt aaaaagtttt cagttccttt
      901 tgaatcacgc ggaaaccatt gcggcgcatc cagagcagaa agccttgctg gcgttcggcg
      961 ccgatgtcga cgccggtgta gaagaacgca cgcaacaagc ggccgtcgcc cagcaacacc
     1021 cgcaacagtt tgttgtaatc gatatcgatg ttatggaacc gcgctgcatg aaagagattg
     1081 ttgccgtcga taaaaaccgc cactcgtccg cgatgaccta actgccagga aacgttgtta
     1141 gtaggatcga aattgttgtt gttattgttc ataaaccgac tccgcaaaac cccttggtga
     1201 tttaagaatg ctttttcatt gttcactggt caagtaacga ggtccatgcc gccgcgttca
     1261 agccacggca agcacctggt ccgatatcgc atcgagatag atcgccttca tgggcccgtt
     1321 actgacttgt atttcccagg caagatataa ctgcaaaccg ttactctgat ctgtaccaga
     1381 ccgtgcatat acgaccagtt cgcgcgccgt tagactcgca ttcgcgggca cctgactttt
     1441 gacgtggtcc accgcctgat ccgcattgat cttcggagtt agaccagcga ttgacgcctg
     1501 tagccgttcc gcattcggaa tgcacgtgct cgaaagcgag atcacttgcc tgtcggcgct
     1561 aaaacgaata accagcttgc cgaactcgcc acgcagcgga taacgaaacg gtctctgttc
     1621 gtaacgcgcg agtctgattc ccgacgcttc atcagctcgt tcgaccagcg agagctggtt
     1681 cggctcggcg ccgatcaatg gacgccactc gttaatgaac cggcgcaacg attctctgac
     1741 ctgttcttca gtctgctccg gctcggcgcc gactttcggc agcgcgatcg gtcctgcgtt
     1801 cggcggcagg ctttcaatcg tgccggtaaa aggattcaga ttggctgccg tccgatcggc
     1861 cagtccgtag tgttgcgaca actgaaacca cgcgaccgaa gcctcttcga gccgcgccgc
     1921 gggatcggcc agtccgatcg gatacggcgg catgttcgac cgtggtccat ccgcatcagg
     1981 cggctgcaac gcagcgcaag caccgctcgc gaatgccgcg acgacgacca gcaatgcgac
     2041 cgtgtatttg cttgttatag tgtgcgaaaa catatctcgc ctcggattat acggctcgtc
     2101 gtataatcaa aatacttgga ggagctgttg cctaaaaata acgaaaacat tcgtctgcct
     2161 ttgcttggac cagtagaacc ttccgagcct cagggtttta cgccggagca gatgataacg
     2221 tgcgatgaat gtttgcgtgc aaatcctccg acgcgcatga actgtatgta ctgtagcgta
     2281 ccgttgccgt tgactgaatc gtcggcgcgg ttgcgcaagc cgatcctgcg ccggcttgag
     2341 aaacatcagc tcggttacaa cacgatctat ttaccttcgg cgcaagagtt ttcggcggaa
     2401 gcgatcggtg aagcggctgc gttgctgaaa ctgaaggaac cggagctcaa gcggattttg
     2461 gctgaaggcg ttccgttgcc gctcgcgcgc acggcgagtc gtgaagaagc ggagttgatt
     2521 gtcgaccgtt tgcagggact tggtgttagg attgtcatgc tggttgtcg
//
LOCUS       DASWTX010000861         1979 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_270854, whole genome shotgun sequence.
ACCESSION   DASWTX010000861 DASWTX010000000
VERSION     DASWTX010000861.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1979
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270854"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1580)
                     /gene="ilvD"
                     /locus_tag="VGD38_12990"
     CDS             complement(<1..1580)
                     /gene="ilvD"
                     /locus_tag="VGD38_12990"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF002068.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004160 - dihydroxy-acid dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEY0728984.1"
                     /translation="MNTDRSRLITQGVERSPNRAMLRAVGFKDGDFKKPIVAIANGYS
                     TITPCNLGLNRLTDRAVEALHESQTMPQVFGTITVSDGISQGTAGMKYSLVSREVIAD
                     SIETVCQAASVDGLVAIGGCDKNMPGAMIAIARLNIPSIFIYGGTIKAGHLHGEDLTI
                     VSAFEAVGKYCAGKIDADELLQIERHACPGAGSCGGMFTANTMSAVIETMGLSLPYSS
                     TMAAEDDEKAENAFASAKVLAQAVEKRILPRQLLGRPAFENAIAVVMAVGGSTNAVLH
                     LLAIAHAAGVKLTLDDFEIIRKRVPVICDLKPSGRYVATDLHRAGGIPQVMKILMKQG
                     LLHGDALTITGQTVEEVLADVPTEPARDQDVIRPFNDPVYAEGHLKILRGNLASEGAV
                     AKVSGVKNPIIAGPARVFDSEETCLEAILAGQIKPGDVVVIRYEGPKGGPGMREMLAP
                     TSALIGAGLGDSVGLITDGRFSGGTYGIVVGHVAPEAAVGGTIALVEEGDSITIDAER
                     GVLQLNVSGEIIKSRFES"
     gene            complement(1570..>1979)
                     /locus_tag="VGD38_12995"
     CDS             complement(1570..>1979)
                     /locus_tag="VGD38_12995"
                     /inference="COORDINATES: protein motif:HMM:NF013606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728985.1"
                     /translation="TSLIKAGFETLTEAGYSPEMAYFECLHEMKLIVDLVYEGGISEM
                     RYSISNTAQYGDMTRGPLVVNDETKRRMQGLLAEIQSGAFARDWMKEARNGRPRFQQL
                     DEQAREHPIERVGTRLRRMMPWLAENRLVTDEH"
BASE COUNT          406 a          658 c          481 g          434 t
ORIGIN      
        1 cagctttcaa atcggctttt tattatttct ccgctgacgt tgagttgcag cactcctcgc
       61 tcagcgtcga tcgtgatgga atcgccctcc tcaacgagcg cgatcgtgcc gccgacagca
      121 gcttccggcg cgacgtgccc gacaactatc ccgtacgtcc cacccgaaaa ccgcccatcc
      181 gtgatcaacc cgacgctatc tcccaaaccc gcaccgatga gcgccgacgt cggcgcgagc
      241 atctcgcgca tgccggggcc gcctttcgga ccttcataac gaatcacgac cacatcaccg
      301 ggtttgattt gcccagccag aatcgcttcc aaacacgttt cttccgagtc gaaaactctc
      361 gccggccccg cgatgatcgg attcttcact cccgagactt tcgccaccgc accttcactc
      421 gcgagattcc cacgcaagat cttcaagtgt ccctcagcgt aaacaggatc attaaaaggc
      481 cgaatcacgt cctggtctct cgctggttcc gtcggcacgt ctgccaaaac ttcctctaca
      541 gtctgcccgg tgatcgtaag cgcgtctccg tgcagtagcc cctgtttcat caggatcttc
      601 atcacctgcg gaatgccgcc ggctctgtgt aaatccgtgg ccacgtaccg gcccgacggt
      661 ttcagatcgc aaatcaccgg aactcttttg cggatgatct caaaatcatc gagcgttagt
      721 ttcacgccag ccgcgtgcgc gattgcgagc agatgcaaaa ccgcattcgt cgatccgcca
      781 accgccatca ccaccgcgat cgcattctca aacgcagggc gacctagcaa ttgccgcggc
      841 agaatccttt tctcaaccgc ctgggccaac accttcgccg aagcaaacgc gttctcagcc
      901 ttttcatcat cctcagcagc catcgtcgaa gagtagggaa gactcaaccc catcgtttcg
      961 atcactgccg acatcgtgtt cgcggtaaac atgccgccac acgaacccgc gcccggacac
     1021 gcgtgccgct caatctgaag cagttcgtcg gcgtcgatct tgcccgcgca gtatttaccg
     1081 accgcctcga acgcactgac gatcgtcagg tcttcaccgt gaagatgacc cgccttgatc
     1141 gttccgccgt aaatgaagat cgatggaata ttgagccgcg cgatcgcgat catcgcgccc
     1201 ggcatgttct tgtcacagcc gccgattgcg accagcccat ccaccgacgc cgcctgacaa
     1261 accgtttcga tcgaatcagc gatcacctca cgcgacacga gcgaatactt catgccggcg
     1321 gtgccctgcg agataccgtc gctcacggtg atcgtgccga acacctgcgg cattgtttgc
     1381 gattcgtgga gcgcttcaac cgcgcgatcg gtgagacggt tcaaacccag gttgcacggc
     1441 gtaatcgtgc tgtaaccgtt cgctatcgct acgatcggtt tcttaaaatc cccgtcctta
     1501 aaaccaaccg cccgcagcat cgcgcgattc ggcgagcgct caacgccttg tgtgattaag
     1561 cggctgcgat cagtgttcat ctgttaccaa acgattttcg gctaaccacg gcatcattcg
     1621 ccgcaagcgc gtcccgacgc gctcgatcgg atgctcgcgt gcttgttcgt cgagctgttg
     1681 aaaacgcggg cggccgtttc gcgcttcctt catccagtcg cgtgcaaacg cgcctgattg
     1741 tatctccgcc agcaatcctt gcatacggcg ttttgtttcg tcgttcacga cgagtggccc
     1801 acgcgtcatg tcgccgtact gcgcggtgtt ggaaatcgaa taacgcattt ccgagatccc
     1861 accctcgtaa accaggtcga cgatgagctt catttcgtgg agacattcga agtaagccat
     1921 ctccggcgag tagcccgctt cggtcaacgt ttcgaacccg gctttgatta gtgaagtca
//
LOCUS       DASWTX010000862         4135 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_183750, whole genome shotgun sequence.
ACCESSION   DASWTX010000862 DASWTX010000000
VERSION     DASWTX010000862.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4135
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183750"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(87..887)
                     /locus_tag="VGD38_13000"
     CDS             complement(87..887)
                     /locus_tag="VGD38_13000"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEY0728986.1"
                     /translation="MSPGAVERYQNDGILFPVPLLSAAEVVEYGNALESVAAICGEGY
                     RRRYDNLHQYFPWAYRLTTNETLLNSVESLIGSDIVVDATLVFYKPPHDSAYSSWHQD
                     SVYSGWHLTPSVSAWIALTPSERSNGCMRAIPGSHRDGVLEHETIHDPDLMNRRGERV
                     RDDVDESYAVDVVLRPGEMSLHDPNIVHGSDANGSDGPRIGFIVRFVTSRTTNRNREL
                     MRVRGDADCTGLRLVDPPVEEEFEVAAMAWRQATEDLPQRWQAQNVVR"
     gene            complement(889..2898)
                     /locus_tag="VGD38_13005"
     CDS             complement(889..2898)
                     /locus_tag="VGD38_13005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728987.1"
                     /translation="MSATAAADGKEAQHDALKDVCLKLLDVAKQPSIPWEARCFATLM
                     AEHQILKLSAGDLETFDAIFVALNLKQPGVERAVNESVLTEGYSTTELRGFIIEFQRK
                     LSRLNRVHRKMHGNKSYDADVREFVQLARRDCKLTLARYLFTPEEIVERVLKQVRVSE
                     GVRDIDVDRERYVDVELSHALSLVPEYERRILELLSRDARVFWVADSTSSAINSLVEY
                     PLTTVVLVIKPPGSHYELELKRAGRRGNPLGVVFKRNGNRVPASHRLDGGSMQWLLRY
                     EASSASRMSFMYRLIHGEDASMPSYVSRNTVYRVPLNGHEVPSFRYFTDPRVFGGANF
                     DQMRVAMKDAVEALKKEEGQYLPQLPGDMALTSEFLSHVAPSQAILCGTSSFRLDKVA
                     TYLAADGADTYFSWLQKPYTVHDAKHFADEILDEVLGVYEAPDGPYDGYANYLEAAFA
                     VPENRRRADEIFIALVKQMATFWGTMLGVRGHSRGESFVARNVGLRSVWEAGQWRVKL
                     IFMDHDGLVLPEHEHGHFFAQNAMPGILLDERHIWGRARPMLFPSTLLGCLHKIYRPG
                     PALKRKATLLADRELKAAYKKTQAELQTNAKLRAFFSKVFLSRLFDWDEFVVGYLNGR
                     DDKWESKMKRMFREKGYDAHQYDDYAQAVEKNKGFFERNGFLFER"
     gene            complement(2906..3127)
                     /locus_tag="VGD38_13010"
     CDS             complement(2906..3127)
                     /locus_tag="VGD38_13010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728988.1"
                     /translation="MAGKDKKGKDKGDTSYGSDTVAIILKRDCAEALYAALVIALGTL
                     PTPKKKKKKKKDKGKKGKDGGGKGKGGKK"
     gene            complement(3188..>4135)
                     /locus_tag="VGD38_13015"
     CDS             complement(3188..>4135)
                     /locus_tag="VGD38_13015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728989.1"
                     /translation="FNETVKYQWYAGKIDRGTNGALAYTPVEFGAINLFPSDPMFQHP
                     NGLIGQLIIEPAGATWKCGGTDPATQKSCEPIAGPASAQATTRAQATVTLSNGSTYRE
                     FSVMISDALQTSLAGQGTAAVNYRSEPKALRITTATDLSCFTSNLLDQPPLTSSPIGE
                     PKTPIFTAKPGDQVRFRMTHPTGTGDSLVFAVHGHSWQFNPYQNNSLNIGTNNLSQWL
                     GSRDNHGSTNHFDLVIPKAGGQGGRQGDYLYTAYLADQASLGVWGLFRVGDPGTPKPN
                     AMCAAQPTSAPATAQPQTNPLIQRFRRAPLNPGGSGSNP"
BASE COUNT          855 a         1268 c         1116 g          896 t
ORIGIN      
        1 caaagaccaa acctgcgaaa gacgtgcaaa gtcaatgtcg atttattaaa cgcgaagcgc
       61 tggatcggga cgcgaatcta ttccaatcac cgaaccacgt tttgcgcttg ccaccgttgc
      121 ggtaaatcct ccgtcgcctg gcgccaggcc atcgccgcaa cctcgaactc ttcttcaacc
      181 ggcggatcaa ccaaccgtaa gccggtgcaa tcagcatctc cgcgcacgcg catcagctcg
      241 cgattccgat tcgtcgtccg gctggttaca aaccgcacga tgaaaccgat tcgtggtcca
      301 tcagaaccgt tcgcatccga gccgtgtacg atgttgggat catgcagcga catctcaccc
      361 ggccgtaaca ccacgtcaac agcgtacgat tcgtcgacgt cgtcacggac gcgttcaccg
      421 cgacggttca tcagatccgg atcgtggatc gtttcgtgtt ccagcacgcc gtctctgtgc
      481 gagcccggga tcgcacgcat gcaaccgttg ctgcgttcgc tcggcgtgag cgcgatccac
      541 gcggaaacag acggcgtcag gtgccagccc gagtaaacac tgtcctggtg ccacgaactg
      601 taagccgaat cgtgcggcgg tttgtaaaag accagggtgg catcgacgac gatgtccgaa
      661 ccgatcagac tctcgacact gttcagcagc gtttcattcg tcgtcaggcg ataggcccac
      721 gggaaatact ggtgcaggtt gtcgtaacgc cgccggtaac cctcgccaca aatcgccgcc
      781 accgactcta acgcattgcc gtattcaacc acttctgccg ccgacaagag cggaaccgga
      841 aacaggattc cgtcattctg gtaacgctcg accgcccctg gcgacaaact agcgctcaaa
      901 tagaaacccg ttcctttcaa aaaatccctt gttcttttcg acagcctgcg cgtagtcgtc
      961 gtactgatga gcgtcgtaac ctttttcgcg gaacatccgc ttcatcttcg actcccactt
     1021 atcatcgcgc ccgttgagat agccaaccac aaactcgtcc cagtcaaaca agcggctgag
     1081 aaaaacctta ctgaagaagg cgcgcagttt cgcgttcgtc tgtaactcgg cttgagtctt
     1141 tttatacgcc gctttcaatt cacgatcggc cagcaaggtt gcttttcgtt tgagcgctgg
     1201 tccaggccgg tagatcttgt gcaaacaacc gagcaacgtt gacgggaaca acatcggccg
     1261 tgcgcgtccc caaatgtgac gctcgtcgag caatattccc ggcatcgcgt tttgcgcgaa
     1321 gaagtgtcca tgttcgtgtt cgggcagcac gagcccgtca tggtccatga aaatcagttt
     1381 cacgcgccac tggcccgctt cccaaacact gcgcagcccg acgtttcgcg ccacaaacga
     1441 ttcaccgcgt gaatggcctc tcacgccgag catagtgccc cagaacgtgg ccatctgctt
     1501 gacgagggct ataaagatct cgtccgcacg gcggcggttt tccggcaccg caaacgctgc
     1561 ctcgagataa ttcgcgtagc cgtcgtatgg accatccggc gcctcgtaaa caccgagaac
     1621 ttcgtccagg atttcatccg caaaatgctt cgcgtcgtga acggtatatg gcttctgaag
     1681 ccaactgaaa taagtatcag cgccgtccgc ggcgagataa gttgcgactt tatccaaccg
     1741 aaacgaactc gtcccgcaga gaatcgcctg cgacggcgca acgtgactga gaaactcgga
     1801 agtcagcgcc atgtcgcccg gaagctgcgg caagtactgc ccttcctctt tcttcaacgc
     1861 ttcaaccgcg tctttcatcg ccacgcgcat ctggtcgaaa tttgcgccgc caaacactcg
     1921 cgggtcggtg aagtaacgaa acgacggcac ctcatgaccg ttcaacggca cgcgatacac
     1981 ggtgttgcgc gagacgtatg acggcatcga cgcatcctcg ccgtggatca gccggtacat
     2041 gaaactcatt cgcgacgcac tcgacgcttc gtaacgcagc agccattgca tactgccacc
     2101 gtcgagacga tgcgacgccg gaacgcgatt gccgttgcgc ttgaacacga cgccaagcgg
     2161 attgccgcgg cgtccggctc gcttgagctc gagctcgtaa tgactgcccg gcggcttgat
     2221 caccaggacc accgtcgtta gcggatactc aaccagcgag ttgatcgccg aactggttga
     2281 atcggcaacc cagaagaccc tcgcgtcgcg cgacagcagt tcgagaatgc gccgttcata
     2341 ctccggcacc agactcaacg cgtgcgaaag ctcgacgtcg acataacgtt cccgatcgac
     2401 gtcgatgtct ctgacacctt cgctcactct cacttgtttg agcacgcgtt cgacaatctc
     2461 ttccggcgtg aacaggtaac gggcgagagt gagtttgcaa tcgcggcgcg cgagttgaac
     2521 aaactcacgc acgtcagcat cgtaggattt gttgccgtgc atcttgcgat gcacgcgatt
     2581 gagccgcgag agtttgcgct ggaactcaat gatgaacccg cgcaattcgg tcgttgaata
     2641 gccttctgtc agaacggact cgttgacggc ccgttcgact cccggctgtt tgagattcaa
     2701 cgccacgaag atggcatcga aggtttcgag atcgccggcg ctcagcttaa ggatctggtg
     2761 ttcggccatc agcgtcgcaa agcagcgagc ctcccagggg atgctcggct gcttcgcaac
     2821 gtccaacagc ttaaggcaaa catctttcag cgcgtcgtgc tgcgcctctt ttccatcagc
     2881 ggccgccgtg gccgacaccg atcgcttact tcttaccgcc tttgccttta ccgccaccat
     2941 ctttaccctt cttgcctttg tccttcttct tcttcttttt cttcttcggt gtcggcagag
     3001 taccgagcgc gataaccagc gcagcataca aggcctcggc acagtctcgt ttgaggatga
     3061 tggctactgt gtcggacccg taactggtat cgcccttgtc cttgcccttt ttgtctttgc
     3121 ccgccatgtg acggttcctc cttcggtcag tgagtaaagt tgaagctaca atttcgggtc
     3181 tcgcagttta cggattactg ccgctgccac ccgggttaag tggcgctctg cggaagcgct
     3241 gaatcagcgg attcgtctgc ggctgcgccg tcgccggcgc cgacgtcggc tgtgccgcac
     3301 acatcgcgtt tggcttcggc gttcccggat cacccacacg gaacagaccc caaacgccaa
     3361 gtgatgcctg gtctgcgagg tatgccgtgt agaggtaatc gccttgtctg ccaccctgcc
     3421 cgccggcttt cggaatcacg agatcgaagt gattcgtcga accgtggttg tcgcgcgagc
     3481 cgagccactg cgaaagattg ttcgtgccga tattcagcga gttgttctga tacgggttga
     3541 attgccacga atgaccgtgg accgcgaaca cgagcgagtc accagtgccc gtcgggtggg
     3601 tcatgcggaa gcgcacctga tctcccggct tcgccgtaaa gattggcgtc ttgggttcgc
     3661 cgatcggcga tgacgtcaac ggcggttgat ccaggaggtt cgaggtgaag cacgagaggt
     3721 cagttgcggt tgtgatacgc aacgccttcg gttcagaacg atagttgacg gctgctgttc
     3781 cctgcccggc cagtgatgtt tgtaaagcgt cgctgatcat caccgagaac tcgcggtacg
     3841 tcgaaccgtt tgacaacgtc acggtcgctt gcgcacgcgt cgtggcctgc gcagacgcgg
     3901 gaccagcgat cggttcgcac gacttttgag tcgccggatc agtaccgccg cacttccagg
     3961 tcgcccctgc cggttcgatg atcaactggc caatcagacc gttcggatgc tggaacatcg
     4021 ggtctgatgg gaacaggttg atcgcgccaa actccaccgg cgtgtaggcc aacgcgccat
     4081 tggtgccgcg gtcgatcttg ccggcatacc attggtactt gaccgtctcg ttgaa
//
LOCUS       DASWTX010000863         1691 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_205303, whole genome shotgun sequence.
ACCESSION   DASWTX010000863 DASWTX010000000
VERSION     DASWTX010000863.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1691)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1691)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1691
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205303"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..322
                     /locus_tag="VGD38_13020"
     CDS             <1..322
                     /locus_tag="VGD38_13020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728990.1"
                     /translation="NRARTLGTPESKKLQRDLSEDHDRLKHLLGQANEHLSQAKTRLQ
                     VIEATASRKLSQGDTDLMMQRLGSAQDQLPLVLEIAELERQMLTETSEPLTNKELTQG
                     SAQN"
     gene            complement(285..1106)
                     /locus_tag="VGD38_13025"
     CDS             complement(285..1106)
                     /locus_tag="VGD38_13025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728991.1"
                     /translation="MLPEEIEVHRDRMWRRDPEFRVEDVYAAERFIEDVGFCEALTDS
                     RRPGPSLYVAVCGRRDAHMPRNVQKDPESRLAWSIKDDVMRRGRCFYAKLIKGRSTFI
                     TPRLLPFFNALWGVPQRREKQLLSADALAILKIMRREWEMATRDLRQESGIADRPRFD
                     RAMVQLQKALKIIPSDVLYEPTFTYIWSIPEARFPDQLKEKVEREVALREIARAYLAG
                     AGMTPRGELARVTGLSSPEAGLGNWALVDEGFAERLGPGIYRLASFERNLASAPC"
     gene            1321..>1691
                     /locus_tag="VGD38_13030"
     CDS             1321..>1691
                     /locus_tag="VGD38_13030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728992.1"
                     /translation="MKSMKLTKRFLTLALLANLSLGPTLASGIAMAAGKDKKNKTLKG
                     LKHDKITSDLREKLVTKSGSSMVKVILQLDGKPSGPLNALLASNGVKIKKHFTNLDSF
                     ALELPLNVVNALPQFPEVASVS"
BASE COUNT          415 a          521 c          428 g          327 t
ORIGIN      
        1 gaatcgagcc cggacgttgg gcacgccgga gtcgaaaaag ctccaaagag acctttccga
       61 agatcacgat cgcttgaaac acctgctcgg tcaggccaat gagcacctga gtcaggcaaa
      121 aacgcgtttg caagtgatcg aagccacggc gagccggaaa ctcagccagg gcgacacgga
      181 tctgatgatg caacgtctcg gaagcgctca ggaccagtta ccactcgtgc tggagattgc
      241 cgaactcgaa cgacaaatgc tcaccgaaac cagcgaaccg ttaactaaca aggagctgac
      301 gcaaggttcc gctcaaaact agcgaggcga taaatccccg gtccaagccg ctccgcaaat
      361 ccttcgtcaa ccagagccca gtttcccaag cccgcttccg gtgaactcaa cccggttaca
      421 cgagccagtt caccgcgggg cgtcatcccc gctcccgcca gataagcccg cgcaatttca
      481 cgcagggcca cttccctttc gaccttttcc ttcaactgat ccggaaaacg agcttcgggt
      541 atcgaccaga tgtaagtaaa cgtcggctcg taaagcacgt cgctcggaat gatcttcagc
      601 gccttttgca actggaccat cgcgcgatcg aagcggggac ggtcagcgat accactctct
      661 tggcgcagat cgcgcgtggc catttcccac tcgcgccgca tgattttcag aatcgccagt
      721 gcgtcagcag aaagaagctg cttttcacgc cgttgcggca ctccccaaag cgcattgaag
      781 aacggcaaca aacgcggcgt gatgaatgtc gaacggccct tgatcaactt ggcgtaaaaa
      841 cagcgcccgc ggcgcatgac gtcgtctttg atagaccagg cgagccggct ttccggatcc
      901 ttctgcacgt tccgcggcat gtgtgcgtcg cgacgtccgc acacagcgac gtaaagcgat
      961 ggcccaggcc ggcgggaatc ggtcaacgcc tcgcaaaatc ccacgtcttc aataaaccgt
     1021 tccgccgcgt aaacatcctc gacgcgaaac tctggatcgc gccgccacat gcgatcgcga
     1081 tggacctcaa tctcttccgg gagcatggcc gggcattcta tcaaagtgat ttagccgaac
     1141 tgtcaaagtg ctttgatcgg tcagccttca gacctcgggg aatttcgcca ctaatcgcct
     1201 aagttgttgc agcacagcga cctaactgtt tcaacacctt tggcacggtc cctgcacatg
     1261 ggttttcgcc ccacccttgt gggcccagaa cgaaacccct gtttgacgga gatgacaacg
     1321 gtgaaatcga tgaagctgac aaaaaggttc ctgacgctgg cgctgctggc gaacctctcc
     1381 ttgggaccaa ccctcgccag tggcattgca atggccgccg gcaaggacaa gaaaaacaag
     1441 acgctcaaag gtctgaaaca cgacaagatt acgtcggacc tgcgtgagaa gctcgttacc
     1501 aagagtggca gcagtatggt caaagtgatc ctgcaactcg acggaaaacc gagtggtcca
     1561 ctgaacgccc tgttagcttc caacggcgtc aaaatcaaaa agcatttcac caatctcgac
     1621 tcttttgccc tcgaattacc cctcaacgtt gttaatgccc tgccgcagtt tcccgaagtt
     1681 gcctccgtct c
//
LOCUS       DASWTX010000864         1723 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_77243, whole genome shotgun sequence.
ACCESSION   DASWTX010000864 DASWTX010000000
VERSION     DASWTX010000864.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1723
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77243"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            101..>1723
                     /locus_tag="VGD38_13035"
     CDS             101..>1723
                     /locus_tag="VGD38_13035"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acyl-AMP ligase"
                     /protein_id="HEY0728993.1"
                     /translation="MHYPSLRSVETETKLSTLIDLLRFRSQNEPTLTAYRFLADEESA
                     SISYGELDLRARGVAALLQRKGLQQERALLVYSPGLDFIVAFFGCLYAGTIAVPASLP
                     QGKRGMARLQAIAGDAQAACVLTTTREFSRIDRGPWARSVEWIASDVIADDVAADWRE
                     PATNGDALAYLQYTSGSTSTPKGVMVTHANVLENSAYIQHGFEHGPESVSLSWLPHFH
                     DMGLVDGIIQPLFSGFTGLLMSPASLLQNPARWLQAISQYGVTHSGGPNFAYELCVRR
                     IDEAQRASLDLSSWRVAYNGAEPVRHDTLKRFAAAFAPGGFRREAFYPAYGLAEATLK
                     VSGGRRGVGPVYCSVDASALEEHRIVLTETGALGSRTLVGCGRAAMGTELAIVNTETL
                     AVCEPDEVGEVWVSGPGVAAGYWSRPEETETTFNARLSKRGKFLRTGDLGFVRDGELF
                     ITGRLKDLIIIRGRNHYPQDIERAVQQCHAALKPDAGAAFSVELGNEERVVVVQEIES
                     RHKNEAETLIETIREAIAEEFEIQPAVVVLIRS"
BASE COUNT          323 a          446 c          570 g          384 t
ORIGIN      
        1 gtcgggcagt tgctcttcgg tgcgtgagca gagtcgatga attgcaggac aaacgcaaca
       61 cacaaccgaa aatcttatcg ctatactttg acgacgcgtt atgcattatc cctctcttcg
      121 ttcggttgaa actgagacca aactatctac tctgatcgat ctcctccgct tcagaagcca
      181 gaatgagcca acgctcacgg cttatcgttt tctcgcggac gaagaaagtg catccatcag
      241 ttacggcgaa ctcgatctgc gcgcgcgcgg tgtggcggcg ttgctgcagc gcaagggttt
      301 gcagcaggag cgcgcgttgt tggtctattc gccgggcctc gatttcatcg ttgcgttctt
      361 tggctgtctt tatgcaggga cgattgcggt ccctgcgagt ttgccgcagg ggaagcgcgg
      421 catggcgcga ttgcaggcga tcgcgggcga tgcgcaagcg gcttgcgtct taactacgac
      481 tcgtgagttt tcgcgcatcg accgagggcc gtgggcgcgt agcgttgagt ggatcgctag
      541 cgatgttatt gcagacgatg tcgctgctga ttggcgcgaa ccggcgacga acggcgatgc
      601 gctggcctat ctccagtaca cctccggctc gacgtcgacg ccgaaaggcg tgatggtgac
      661 gcacgccaac gtcctcgaaa actctgcgta cattcaacac ggattcgaac atggaccgga
      721 aagcgtgtcg ctgtcgtggc tgccgcattt tcacgacatg gggctggttg atggaatcat
      781 tcagccgctc ttcagcgggt tcaccggact gctcatgtcg cccgcgtcgc tgttgcagaa
      841 tccggcgcgt tggctgcaag cgatctcgca atatggcgtg acgcacagtg ggggtccaaa
      901 tttcgcttac gagctatgcg tgcgccggat cgacgaagcg caacgcgcgt cgctcgacct
      961 cagcagctgg agggttgcct ataacggcgc ggaacccgtg cgccacgaca cgctcaaaag
     1021 gtttgccgct gcgtttgcac ccggcggttt tcgtcgcgaa gcgttctatc ccgcgtacgg
     1081 gctggcggaa gcaacgctga aagtgtctgg cgggcgaaga ggcgttgggc cagtttactg
     1141 ttcggtcgat gcgtctgcgt tggaagagca tcgcatcgtg ttgacagaaa cgggcgcgct
     1201 tggttcgcgc acgctggttg gttgcggtcg tgcagcgatg ggcacggagt tggcgatcgt
     1261 caataccgaa acgttggctg tgtgcgagcc ggatgaggtt ggtgaggttt gggtttctgg
     1321 gccgggcgtc gccgcgggtt attggagtcg gccggaagag accgagacga ctttcaacgc
     1381 acggctctcg aagcgcggga agttcctgcg cacgggcgat ctcgggtttg ttcgtgatgg
     1441 tgagttgttc attacggggc ggttgaaaga cctgatcatc atccgcggcc gtaatcatta
     1501 tccgcaggat attgagcgag cggtgcagca gtgtcacgcg gcgctcaagc ctgatgccgg
     1561 tgcggcgttt tccgtcgaac tcgggaacga agagcgtgtg gtggtggttc aggaaatcga
     1621 gtcgcgtcat aagaatgaag ccgagacgct tatcgaaacg attcgtgagg cgatcgcgga
     1681 ggagtttgag atacagcccg cggtggtggt gctgatcagg tca
//
LOCUS       DASWTX010000865         2543 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_34613, whole genome shotgun sequence.
ACCESSION   DASWTX010000865 DASWTX010000000
VERSION     DASWTX010000865.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2543
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34613"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..816
                     /locus_tag="VGD38_13040"
     CDS             <1..816
                     /locus_tag="VGD38_13040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728994.1"
                     /translation="AVNLNGPYMSEAAAMVQAAKIRFVKVTTPASAAGVSFAASVLGN
                     SKNMTATATAGFSVPLNEFCNWLPVSVIDYGTPIVPGTTYTFRAGTQGSVSPGNYQIL
                     AVAGRGGADVRVGLAAGVDECAGPGATYEVDTKPGVNSGPVRQGINTRFDDYQTSHVN
                     PVDMPPDKNIKENITYDQYKAGSPSQSPKNPGVDGRRVVVIPIVKEDQYDSGRNTVTF
                     DRFGVFFLQTKVGGGNGGELVAEYIDDIVLGQGGFNPNGGPVNNLMAVPVLYR"
     gene            827..1354
                     /locus_tag="VGD38_13045"
     CDS             827..1354
                     /locus_tag="VGD38_13045"
                     /inference="COORDINATES: protein motif:HMM:NF019428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE family protein"
                     /protein_id="HEY0728995.1"
                     /translation="MMHHRIKKIRNLRRSRRLNWLNRFRRDEQGVQLLELAIVLPIMM
                     MMFASLAEFGRYFYEYSTAAKGARLGARYLASKSATSNTKDWEVIAKNIVVFGNAAGD
                     GDPILPGMTTANVDVEYSGGTAGVPELVKVSIVNYQHESLFDLGALLNSPSLSLNVDV
                     KPSVTMRYLLTTPSV"
     gene            1366..1812
                     /locus_tag="VGD38_13050"
     CDS             1366..1812
                     /locus_tag="VGD38_13050"
                     /inference="COORDINATES: protein motif:HMM:NF019428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE/TadG family type IV pilus assembly protein"
                     /protein_id="HEY0728996.1"
                     /translation="MLRMKTCRDNERGATLVEFAIGVTVFATAMFAVLEFGRALWVHN
                     ALTDAARRGARYAALHTSADAANVRNVVVYGNEAGSGQPMLNNLTTANVEVDYNGFGL
                     NAGTVSVSITNYQFQFVIPIVGTTITMPSYKTTLTAESAGLIPADV"
     gene            2056..>2543
                     /locus_tag="VGD38_13055"
     CDS             2056..>2543
                     /locus_tag="VGD38_13055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0728997.1"
                     /translation="MTEPISVVVLSTGLENFKDIRRALSAEERVKLLAGGNDADQLYD
                     EIVRLKPNAAIIALGPNAENAVRFIERLTAECPKTTIISAAQNASPDLIIGSLRAGAK
                     EFLRIPISADELRTVLDRVSDFGNQHQVEAPKKQGRMISVFSSKGGCGTSFIATNFAA
                     AT"
BASE COUNT          572 a          711 c          746 g          514 t
ORIGIN      
        1 gcagtaaatc tcaatggtcc atacatgagc gaagcggcgg cgatggtcca ggccgcgaag
       61 attcgcttcg tcaaagtcac cacgcccgct tcagcagcag gtgtttcatt cgctgcttca
      121 gttttgggca acagcaagaa catgactgcc acggcaacgg caggtttttc ggtgccgttg
      181 aacgagttct gtaactggct gccggtttcc gtgatcgact acggcacgcc gatcgtgccg
      241 ggcaccactt acacgttccg cgcgggcaca caaggttcgg tctcgccggg taactatcag
      301 attctcgcgg tcgccggtcg cggtggcgcc gatgttcgtg tcggactcgc cgcgggcgtc
      361 gacgagtgtg ccggacccgg cgcgacttat gaagtcgaca cgaaaccggg tgtgaactca
      421 ggaccagtgc ggcagggaat caacacgagg ttcgatgact accaaacctc gcacgtgaat
      481 cccgtggata tgccgccgga caagaacatt aaagagaaca tcacctacga ccagtacaaa
      541 gccggcagcc cgtcgcagtc tccgaaaaat ccgggtgtgg atggccgccg cgtcgtcgtg
      601 attccgatcg tgaaggaaga ccagtacgac tcgggccgca acaccgtcac gtttgatcgt
      661 tttggagttt tcttcctgca aacgaaggtc ggcggcggca atggtgggga attagttgct
      721 gagtacatcg acgacatcgt gttgggccag ggcggtttca atccgaacgg cgggcccgtg
      781 aacaacctga tggcagtccc tgttctttac aggtaaggcg gcaaccatga tgcaccatcg
      841 cataaaaaaa attcgcaatc tgcgacgttc gcgccggctg aattggctga atcgctttcg
      901 tcgtgacgag cagggcgtgc aactgctcga gctggcgatc gtgttgccga tcatgatgat
      961 gatgttcgcg agtctcgcgg agtttggccg ttacttctac gaatactcga cggccgcgaa
     1021 gggcgcgaga ctcggcgcga gatacctcgc gtctaaatcg gctaccagca acaccaagga
     1081 ttgggaagtg atcgcgaaga acatcgtcgt cttcggaaac gcggccggcg acggcgatcc
     1141 gatcctgccg ggaatgacca cggcaaatgt tgacgtcgag tactccggcg gcaccgcggg
     1201 tgttccggag ctggtgaagg tcagcatcgt caactatcag catgaatcgc tgtttgatct
     1261 gggcgcactg ctgaattcgc cttcactgtc gctcaacgtc gatgtgaaac cgagtgtgac
     1321 gatgcgttac ctgctcacaa cgccttcggt ctaggagcaa caactatgct tcgcatgaaa
     1381 acgtgcaggg acaacgaacg aggggcgacg ctggttgagt ttgcgatcgg cgtcacggtg
     1441 tttgcgactg cgatgtttgc cgttttggaa ttcggccgcg cgctgtgggt acacaacgcg
     1501 ttgaccgatg ccgcgcggcg cggtgcgcgt tacgccgcgt tgcacacatc ggcagacgcc
     1561 gcaaatgttc gaaacgtggt ggtctatggg aacgaagccg gcagcggcca accgatgctg
     1621 aacaacctga ctaccgcgaa cgtcgaagtg gattacaacg gctttggcct gaacgccgga
     1681 acggtttcag taagcatcac gaactatcag tttcagtttg tcattccgat cgtcggcacg
     1741 acgatcacca tgccgagtta caagacaacg ttaacggctg aaagtgcggg actgataccc
     1801 gccgacgttt aactccaggt tgaaatcggg gagcttagga atttcgatcg tggctaaagc
     1861 aaatgccagt ttaagtttcg aatcggctgc caggcggcgt cggttacgcc tgcctaacaa
     1921 acgtcgctgc gaagtgcact cagcttcgta gcggcgcggt accttccgtg aatcccccgc
     1981 gcctcttcaa aagttttagt catagagagc cgccggcagt cggatcgaat tgaaaacgac
     2041 acgcacgagg aaacaatgac cgaaccaatc tcagtggtag tcctaagcac cgggctcgag
     2101 aatttcaaag acatccggcg tgctctctct gcggaagaac gcgtgaaact gctggccggc
     2161 ggcaacgatg cggatcagct ttacgacgag atcgttcgcc tcaaaccaaa cgccgcgatc
     2221 atcgcgcttg gtccaaacgc cgagaacgcc gtcagattca tcgagcgtct cactgccgag
     2281 tgtccaaaaa ccacaatcat ctccgcggca cagaacgcgt caccggatct gatcatcggc
     2341 agtttgcgcg ccggtgcgaa agagttcctg cgcattccga tcagcgccga cgaactgcgc
     2401 acggtgctcg atcgcgtttc cgattttggt aatcagcatc aggttgaagc gcccaaaaag
     2461 cagggccgca tgatctcggt cttttccagc aaaggcggct gcggcacgtc gttcatcgcg
     2521 acaaacttcg ccgcggcgac gaa
//
LOCUS       DASWTX010000866         2782 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_407486, whole genome shotgun sequence.
ACCESSION   DASWTX010000866 DASWTX010000000
VERSION     DASWTX010000866.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2782)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2782
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407486"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1311)
                     /locus_tag="VGD38_13060"
     CDS             complement(<1..1311)
                     /locus_tag="VGD38_13060"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEY0728998.1"
                     /translation="MLDQRRAAAQPQSSREEIFAERYETLLEWALQLTHQQRDSAEDL
                     VQDAFVQFMLARTQLEEIENVNGYLRRLLRNMHISRVTRLNQRLQHDALSIADYDTVL
                     LGWTAIEPERRMQAAEQLHQICAYACFRKESSRAGSVLILRFFLDYFPTEIARVLGSS
                     RHTVDQWQGIARREAKVFLSEPNRLRFVDAKTAAVRPWTLYPASDVDLMRALREIIFN
                     SRQGACLPREALQLAYLPGRTEALSATELAHVVSCRSCLDTINAILGLPTLAERYPED
                     CSRKEPPLDAGGSGGSGGVPTVLPKRFKRQLREVREHKPSELRIVVNGVALSSLKVNS
                     DFSEVDLNLPAGEPVEFVEILSEQDFQLLFLNTGDTRAEQWAEIELSEGRMLEVSLQT
                     IDGPQLRVVYKDPVVEEISSDGSVSKGMVSSPLTIVPQARVKRWL"
     gene            complement(1583..2167)
                     /locus_tag="VGD38_13065"
     CDS             complement(1583..2167)
                     /locus_tag="VGD38_13065"
                     /inference="COORDINATES: protein motif:HMM:NF017885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HEY0728999.1"
                     /translation="MNRQAYYEDLKLLARQVRAENGLRSPRVLASDLRRIYDRHGIVI
                     DSWPYRLRNLRGAFISDHLGTTVMLASGLPQDPMVFTMAHELKHFFRDRDLGISYCDQ
                     SNLGKTVEVGAEIFAAELLFPDQDFVKHMRMLRVGRDQCLPKTLVQLKLKTRTTLSYA
                     GLAIKAERLGYAPAASLTKIKTWRKLESLYGAGR"
     gene            complement(2164..2556)
                     /locus_tag="VGD38_13070"
     CDS             complement(2164..2556)
                     /locus_tag="VGD38_13070"
                     /inference="COORDINATES: protein motif:HMM:NF024949.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY0729000.1"
                     /translation="MDLLDHVAAKIRELRVSYNSGEGLSQESLAIRLKVAPNTISRWE
                     TGTYRPGLKDLERLSRFFGVSMMSFFPPELVDEEEDENLKALLRTARQLHPSDLEELR
                     KYAEFRRARGIYQGKTRPKPGRKGGKQK"
BASE COUNT          596 a          800 c          759 g          627 t
ORIGIN      
        1 gagccagcgt ttgacccggg cttgaggcac gatagtgagg ggtgaggaca ccatcccctt
       61 acttacagac ccatctgacg agatctcttc gacgaccgga tctttgtaaa cgacgcgaag
      121 ctgtggtcca tcgatcgtct gcaacgaaac ctccagcatg cggccttcgc tcaactcgat
      181 ctcggcccac tgctcggctc ttgtgtcgcc cgtgttcaga aagagaagct ggaaatcctg
      241 ttcacttaga atctcgacaa actcgaccgg ctcacccgcc ggcaagttga gatcgacctc
      301 gctgaaatcc gaattgacct tcaacgaact cagcgcaaca ccattgacga cgattcgcag
      361 ttcgctcggt ttgtgctcgc gcacttcacg cagttggcgt ttgaatcgct tcggcaaaac
      421 ggtgggaaca cccccggagc cgccgcttcc ccccgcatcg agcggcggct ccttccgcga
      481 acagtcctcg ggataacgtt cagccagcgt tggcaagccg agtatcgcgt tgatcgtatc
      541 gaggcacgat cgacaactaa ccacatgggc caactccgtt gctgaaagcg cctcagtcct
      601 gcccgggaga tacgccagtt gcaacgcctc acgcggcaaa caagcgccct gtcgtgaatt
      661 gaagatgatt tcccgaagcg cgcgcatgag atcgacatcc gaagccggat acagagtcca
      721 cgggcgcacg gcggcggtct tcgcgtcgac aaaacgcaag cggttcggct cgctcagaaa
      781 gaccttcgct tcacggcgcg caatgccttg ccactgatcg acagtgtgcc gagagctgcc
      841 gagcaccctc gcgatttcag tagggaagta atccagaaag aacctgagaa tcaggacgct
      901 gcccgcgcgt gacgactcct tgcggaagca cgcatacgcg cagatctggt gcaactgttc
      961 cgccgcttgc atgcggcgtt cgggctcgat cgcggtccaa ccgagcagca ccgtgtcgta
     1021 gtcagcgatc gagagcgcgt cgtgctgcag ccgttgattc aagcgcgtca cacgcgagat
     1081 gtgcatgttg cgcaggagcc gccgcagata accgttgacg ttctcaatct cttccaactg
     1141 cgtacgcgcg agcatgaact ggacgaacgc gtcctgcacc aggtcttcag ccgagtcacg
     1201 ttgctgatga gtgagttgca acgcccactc gagcagcgtt tcgtaacgct ccgcgaagat
     1261 ctcttctcga ctggattgtg gctgggccgc cgcgcggcgt tgatcgagca tttcgactat
     1321 atgactgttt gcttgagggt gatctcaaac ggaaaatgaa gaaaataaac gacttacggc
     1381 gtcgaacgcc gacactattc cgacccgcgc cagtttcacg aaccagcgcg cgtgttgagt
     1441 acaagttttt tagtgcccag cgtgaatcct atacgctgtt gcgtatgcta taccctgttg
     1501 ggcatagccg caacttttga tgtgttttgg ttaacgtctg aaccagcgca cgtcagtgtg
     1561 aggggcgctg attttcgaaa tcctacctgc cggcgccgta caggctttcc agtttgcgcc
     1621 acgtcttgat cttcgttaac gaagcagccg gcgcgtagcc gagtcgttcc gctttgatcg
     1681 ccagtcccgc gtaactcagc gtggtcctgg ttttaagttt taactgtacg agcgtcttcg
     1741 gcaggcactg atctcgcccg acccgcagca ttcgcatgtg cttgacgaaa tcctgatccg
     1801 ggaagagcag ttccgccgca aagatctccg cgcccacttc gactgtctta ccgaggttcg
     1861 actggtcgca ataagaaatg ccgagatctc gatcgcgaaa gaagtgtttc agctcgtgcg
     1921 ccatcgtgaa caccatggga tcctgcggca gaccgctcgc gagcatgacg gtggtgccga
     1981 gatgatcgct gataaaggcg ccgcgcaggt tgcgtagacg ataaggccac gagtcgatca
     2041 cgatgccgtg gcgatcgtag atgcgccgca gatcgctggc gagcacgcgt ggtgagcgca
     2101 aaccgttttc ggctctcacc tgacgcgcca gcagttttag atcttcgtaa taagcctggc
     2161 ggttcacttt tgtttacctc ctttccggcc cggtttgggc cgggtctttc cctggtaaat
     2221 gccgcgtgct cgacgaaact cggcgtactt gcgcagctct tcgaggtcgg acgggtgtaa
     2281 ctgtcttgca gttcgcaaaa gcgctttcag attttcgtcc tcttcttcgt ctacaagttc
     2341 gggtggaaaa aacgacatca tcgaaacgcc gaagaagcgt gagagacgtt cgaggtcttt
     2401 gagacccggg cgatacgtac ccgtttccca acgtgagatt gtgttaggcg cgactttaag
     2461 gcgaatggcg agtgactcct gagacagtcc ttcgccactg ttgtaactaa cgcgcagttc
     2521 cctgatcttc gctgcgacgt ggtccagcag gtccattttg ttttctcatt tctcatcccg
     2581 aatgaggacg gcatttaact aatatcgttg acagggtgtg agggcgcgcg tattatacgc
     2641 cagcggcaat taatttcaat ggtatcgagc gataccgtag ttctcagccc agaataaaaa
     2701 cgaataaatt gaactggtac ctcaccatga aaaatccttt ctttcgcaaa cgagtctttc
     2761 tggcttcagt ctcacctggc ca
//
LOCUS       DASWTX010000867         2847 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_140554, whole genome shotgun sequence.
ACCESSION   DASWTX010000867 DASWTX010000000
VERSION     DASWTX010000867.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2847
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140554"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..234
                     /locus_tag="VGD38_13075"
     CDS             <1..234
                     /locus_tag="VGD38_13075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729001.1"
                     /translation="EESNRRGATSGLSTVLRPDGSFRIGGLPTGAATFLLSPTSKFRI
                     VRVEHNGLIHARGLAVKQGEDVTGVRIVVSYVE"
     gene            237..1916
                     /locus_tag="VGD38_13080"
     CDS             237..1916
                     /locus_tag="VGD38_13080"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0729002.1"
                     /translation="MFRAITITFILALTSAFVFAQTPGKGSIAGQVVDENGQPLHGAM
                     VYIRANRPNADYTVRTDREGQFQVDGLEPFDYSATVQMPAYFTDGAKMPRGPLRVGDR
                     VTLTMIKGGVLTGRVIDANGDPVVNVNVRAELVRYYGRPTSGGWVQGRATDDRGIYRI
                     YGLLEGTYVVFAGGPGRLKSQSSESVFEFDVPTYAPSSTRETAAEFNVRNGEEVTAAD
                     IRYRGEQGRLISGDIIPAKSHTSFGVRLITGGEAGTHAETFTRGNFVFKGVADGNYSL
                     IAQSYGPEGDAAISETKQVTVQGADVTGIKLTTKLLGSVSGRVVLDETKLADCNSKEH
                     PLATETSVFAWYRDDEAAKQIPRFVRPKDPVRPNEKGDFVLQNLAPGSYYFGPSLRAR
                     QWYVHSITFGPPPTTPTKTKHTDATRVWTNVKMEDRLSGLTITLAQGGASLRGGLELA
                     PGERAPEGSFLVLVPAEREKAHDVLRFFTTPVDRNGTFELNNIAPGRYWVLPQMTGED
                     PAASPSAKVRLPHESETRAQLLREAEAAKTEIEIKPCQDVVGYKLPLKPRE"
     gene            complement(1979..>2847)
                     /locus_tag="VGD38_13085"
     CDS             complement(1979..>2847)
                     /locus_tag="VGD38_13085"
                     /inference="COORDINATES: protein motif:HMM:NF025253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098024 - virus tail, fiber [Evidence
                     IEA];
                     GO_process: GO:0019062 - virion attachment to host cell
                     [Evidence IEA];
                     GO_process: GO:0046718 - viral entry into host cell
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tail fiber domain-containing protein"
                     /protein_id="HEY0729003.1"
                     /translation="GTATPVLDMHANTTDTPAIRLEQNNAGGCTAQTWDIGANEANFF
                     IRDVTGGSRLSLRIRPGAPTSSLDIAANGNIGVGTASPKARIDLKQLEDTFVGSLQLR
                     RATTNDTWAVATGVDNNLYFGYANDASLADSTADFGVVPVIVTTTGRMGINTLVPDQR
                     LSVNGDASKTGGGSWQTFSDKRLKNIAGPFRSGLNAVMRLQPLRYQYKPDNTVGINDN
                     VEHIGLAAQDVQKVIPEAVTANSNGYLMVNNDPIIWTMLNAIKEQQQEIQELKREVRR
                     LRANTARRQRRR"
BASE COUNT          600 a          783 c          868 g          596 t
ORIGIN      
        1 gaggagagca accgaagagg cgcgacttcg gggctatcaa cggtgctgcg cccggatgga
       61 agttttcgta ttggcggcct gccaaccggc gccgcgacgt tccttcttag ccccacgtcg
      121 aagtttcgca ttgttcgtgt cgagcacaac gggcttatcc atgctcgtgg gttggcggtg
      181 aagcagggtg aagacgttac gggcgtgcgc attgttgtta gttacgttga atgagaatgt
      241 tcagggcaat cacgatcaca ttcattctcg cgctgacttc agcgtttgtg tttgcacaga
      301 cgccgggaaa gggttcgatc gccggccagg tcgtcgacga gaacggacag ccgcttcacg
      361 gcgccatggt ctacattcgc gcgaaccggc caaacgccga ctacacagtg cgcaccgatc
      421 gcgaggggca gtttcaggta gatggattgg agccttttga ctactcagct actgtgcaga
      481 tgccggccta tttcactgac ggcgccaaga tgccccgtgg accacttcgc gttggcgatc
      541 gagtaacgct cacgatgatc aaaggcggcg tgctgacggg tagagttatc gacgccaacg
      601 gcgatcccgt cgtcaacgta aacgtccgcg cggaactggt gcgttactac ggccggccca
      661 cgagtggtgg ctgggtacag ggaagagcga ctgacgatcg cgggatctac cgcatttatg
      721 gtttgctgga aggaacgtac gttgttttcg caggtggtcc aggccgcttg aagtctcagt
      781 catcagaaag cgtttttgag tttgacgttc ccacctacgc tccttcttca actcgcgaaa
      841 cggccgctga attcaatgta cggaacggcg aagaagttac tgcggccgac attcgctatc
      901 gcggcgaaca gggccgcctt attagcgggg acatcattcc agctaaatcc cacacgtcgt
      961 tcggcgtgag gctgattacc ggcggtgaag cagggacgca cgccgaaacg ttcactcgcg
     1021 gaaattttgt tttcaaggga gtagccgatg gcaactacag cttgattgct caatcgtatg
     1081 gtcccgaggg cgatgctgcg atctccgaaa caaagcaagt gactgtgcag ggcgcggacg
     1141 tcactggaat caagttgacg acgaagcttt taggttcggt cagtggccgc gtggtgttgg
     1201 acgaaacaaa actagcggac tgcaacagca aagagcatcc gttagctacc gaaacatcag
     1261 tcttcgcttg gtacagggac gatgaagccg cgaagcagat accgcggttt gtccgaccga
     1321 aagatccggt gcgtccgaac gagaagggcg acttcgtctt acaaaatctc gccccgggct
     1381 catactattt cggtcccagc ctcagagcgc ggcaatggta cgtgcactcg atcacttttg
     1441 gtccaccgcc aactacaccg acgaagacaa agcacaccga tgcaacgcgc gtttggacca
     1501 acgtcaagat ggaggaccgt ctttccggtt tgacaatcac gctggcccag ggcggcgcat
     1561 cgttacgggg agggctcgag ttggcgccgg gagaacgggc tccggaggga tcgttcctcg
     1621 tcctggtgcc tgcggaacgc gagaaggctc atgacgtctt acgcttcttc acgacaccag
     1681 tcgatcggaa tggaactttc gagctgaaca acattgctcc gggccgttat tgggttctgc
     1741 ctcagatgac cggcgaagac ccggcagcgt cgccgtcagc aaaagtgcgg ctgcctcacg
     1801 aaagcgaaac gcgcgctcag ctactccgcg aagcggaagc cgctaaaacc gagatcgaaa
     1861 tcaaaccctg ccaggacgtc gtgggttaca agctcccgct caaacccagg gaataaaaaa
     1921 aggtggcccc agtgcaaaaa actccggggc cacccaaaaa caatcaatca gaaaaagctt
     1981 aacgtcgtcg ttggcgtcgc gcggtgttgg cgcgcagacg gcgaacttca cgtttcagtt
     2041 cctggatctc ctgctgctgt tccttgatgg cgttgagcat ggtccagatg atcgggtcgt
     2101 tgttgaccat caggtagccg ttggagttgg cggtgacggc ttcagggatc actttctgga
     2161 cgtcctgagc ggccaggccg atgtgttcga cgttgtcgtt gattccaacg gtattgtctg
     2221 gcttgtactg gtagcgcagc ggctgcaatc tcatcaccgc attcaaaccg ctacggaacg
     2281 gtccggcgat gttcttcaac cgcttgtccg agaacgtctg ccacgaaccg ccaccagtct
     2341 tgctcgcgtc gccgttaacc gacaaacgct gatccggtac cagggtgttg atacccatgc
     2401 ggccggtggt cgtgacgatt acgggaacga cgccgaagtc agccgtcgaa tccgcgagcg
     2461 aagcatcgtt ggcgtaacca aagtacaagt tgttgtccac gcccgtggcg actgcccacg
     2521 tgtcgtttgt ggtagcgcgg cgcaactgca gactgccgac gaacgtgtct tcaagctgtt
     2581 tgaggtcaat gcgggccttc ggacttgcgg tgccgacgcc gatgtttcca ttcgccgcga
     2641 tgtcgagcga gctggtcgga gcgccgggac ggatgcggag tgaaagccgc gaaccacccg
     2701 tcacgtcgcg aatgaagaag tttgcttcgt tggcgccgat gtcccacgtt tgcgcagtgc
     2761 agccgccggc gttgttctgt tcgagccgga tcgcgggcgt gtcggtggtg ttggcgtgca
     2821 tgtcgagcac cggggttgct gttccga
//
LOCUS       DASWTX010000868         2390 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_363957, whole genome shotgun sequence.
ACCESSION   DASWTX010000868 DASWTX010000000
VERSION     DASWTX010000868.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2390)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2390)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2390
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363957"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..918)
                     /locus_tag="VGD38_13090"
     CDS             complement(<1..918)
                     /locus_tag="VGD38_13090"
                     /inference="COORDINATES: protein motif:HMM:NF013703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEY0729004.1"
                     /translation="MKNVSNKPRFDRSIVEGPLRPAVWKIAWPTMLTNVIGGLQGMVD
                     HALVGHLVGYKANAAIGVSWQIFIVVIVFISSLFTGMSVLVARFAGAGDEEKVNRTVY
                     QAFLTAIFIALGVMAPIGYFISPSLLNLVNAAPDVRAEALPFIRTMFVFSLGMMIFFM
                     LSGALRSAGDARTPMMLGISMTVLNLVFNIVLIRGLGPSPAFGTMGAAMGTCIASGAI
                     ALFALGKMWSGDWVVSFPRSGFKPDWGIIKAIFRFGLPTGIQGIAMNVGGVFMLAFIG
                     SLAQSAAAQAAFAVAYTELFSLVTWTSVGL"
     gene            complement(899..1729)
                     /locus_tag="VGD38_13095"
     CDS             complement(899..1729)
                     /locus_tag="VGD38_13095"
                     /inference="COORDINATES: protein motif:HMM:NF014759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exonuclease H3TH domain-containing
                     protein"
                     /protein_id="HEY0729005.1"
                     /translation="MIVHLLDGTYELFRHFYGIRRFKKTDPPFGAVSGVLSTVAQMID
                     EGATHIGVATDHVIESFRNKLWPGYKTSAGMERALLAQFVPLEESLLAMGVTVWPMVD
                     LEADDALASAAYLAAQDEEVDKVCIWTPDKDLAQCVVDDRVVQVDRRSGTIRNAEGVR
                     AKFGVDPQFIADYLALVGDSADGYPGISGCGPKTAAQLINRYGPLEEFPPNALSEANR
                     PLAILFKDLATLRTDAPLFEDVDEIRWRGATPDFPAVAEKIGSARLLTKVRKLEKRLK
                     "
     gene            1835..2344
                     /locus_tag="VGD38_13100"
     CDS             1835..2344
                     /locus_tag="VGD38_13100"
                     /inference="COORDINATES: protein motif:HMM:NF015735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HEY0729006.1"
                     /translation="MVIVKANEESEAGVMPNEQILTDMGKYNEELVKAGIMLEGEGLH
                     PSSKGKRVKFSGSNRIVTDGPFAETRELIAGYWLWQVKSIDEAVEWLKRAPFDGGTEL
                     EIRPVFEMEEFGDEFTPELREQEERIRAEAEKLKNKSSPWLKTKTHLNLYASITSGRA
                     ATWPKTKAA"
BASE COUNT          594 a          734 c          644 g          418 t
ORIGIN      
        1 caatcccacg gacgtccacg tgactagcga aaagagctca gtgtaagcga ccgcaaacgc
       61 cgcctgcgcc gccgcgctct gtgcgagcga accgatgaac gcaagcatga acacgccgcc
      121 gacgttcatc gcgattccct gaatcccggt cggcaaacca aaacgaaaga tcgctttgat
      181 aatcccccaa tccggcttga acccgctgcg cggaaacgac acgacccaat caccgctcca
      241 catcttgccg agtgcgaaaa gcgcgatcgc gcccgacgcg atgcacgtgc ccatcgccgc
      301 gcccatcgtt ccaaacgccg gactcggacc aagcccgcga atcagcacga tgttgaagac
      361 gagattgagc accgtcatgc tgatcccaag catcatcggc gtgcgagcgt cgcccgccga
      421 acgcagcgcg ccgctgagca tgaagaagat catcatgccc agactaaaaa caaacatggt
      481 gcgaataaac ggcaacgcct cggccctcac atccggcgcc gcgttgacga ggttgagcag
      541 actcggcgaa atgaagtaac cgatcggcgc catcacgccg agggcgatga agattgcggt
      601 gagaaaagcc tgatagaccg tgcgattcac tttctcttcg tcacccgcgc cggcgaaacg
      661 cgccaccagc acgctcatgc ccgtgaacaa cgacgagatg aaaacaatca cgacgataaa
      721 gatctgccag ctcacgccga tcgcggcgtt cgctttgtag ccgacaagat ggccgacgag
      781 cgcatggtcc accatgccct gcaacccgcc gatcacgttc gtcagcatcg tcggccacgc
      841 gatcttccag accgcgggac gcagcggccc ttcgacaatc gaacgatcga accgtggctt
      901 atttgagacg tttttcaagc ttgcgtacct tcgtcaacaa acgcgcactg ccaatcttct
      961 ccgccacggc cggaaagtcc ggagtcgcgc cgcgccagcg tatctcgtcc acgtcttcaa
     1021 atagcggcgc gtcagttctt aaagtcgcga ggtctttgaa gaggatcgcg agcggacgat
     1081 tcgcttcact caaagcgttc ggcggaaact cttccagtgg tccataacga ttgatcaact
     1141 gcgccgccgt ttttggacca caacctgaaa tccccggata accatcagct gagtcgccca
     1201 cgagcgcgag gtagtcggca atgaactgcg gatcgacgcc aaacttcgcg cgcactcctt
     1261 ccgcgttgcg aatcgtgccg ctgcgtcgat cgacctgcac gacgcgatcg tcaaccacgc
     1321 actgcgccag atccttgtcg ggagtccaga tacaaacttt gtcgacttct tcatcctgcg
     1381 ccgccaggta cgcagccgag gcaagcgcgt cgtcagcttc gagatcgacc atgggccaga
     1441 ccgtcacgcc catcgccaac aacgattcct cgagcggcac aaactgcgcc agcagcgccc
     1501 gctccattcc ggcgctcgtc ttgtagcccg gccagagttt gttgcgaaac gattcgatga
     1561 cgtgatcggt cgccacgccg atgtgcgtcg cgccttcatc aatcatctgc gcgaccgtcg
     1621 acagcacacc ggacacggcg ccgaacggcg gatcagtttt tttgaaacga cggattccgt
     1681 aaaagtgtcg aaacagctcg taggtaccat cgagcaggtg aacaatcatt caaggcagct
     1741 taaaaaattt tcccgcaact gtcgaattca ccgtcgcccg ttcgattaac cagtgaaagt
     1801 cgaaactatt taaggagaat gcaaaatgcg agtaatggtc attgtaaaag cgaacgaaga
     1861 atctgaagcc ggagtcatgc cgaacgaaca aatcctgacg gacatgggca agtacaacga
     1921 agagttggtg aaggccggca tcatgctcga aggcgaaggg ctgcacccgt cgtcgaaggg
     1981 caaacgcgtg aagttttccg gcagcaaccg catcgtgacc gatggtccat tcgcggaaac
     2041 gcgcgaactg atcgccggtt attggctgtg gcaggtaaag tcgattgacg aagcagtcga
     2101 gtggctgaag cgggcgccgt ttgacggcgg cacggagctc gagattcggc cggtgtttga
     2161 aatggaagaa ttcggcgacg aattcactcc cgaactgcgc gagcaggaag agcgaatccg
     2221 cgccgaagcc gagaagctca agaacaagtc aagcccgtgg ttaaaaacca aaacgcactt
     2281 gaacttgtat gcgtcgatta ccagcggcag agctgccact tggcccaaaa ccaaagccgc
     2341 ctgatactga tgtcgactca ccaaaccggg gcgaactcaa gttgccgatc
//
LOCUS       DASWTX010000869         5022 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_407526, whole genome shotgun sequence.
ACCESSION   DASWTX010000869 DASWTX010000000
VERSION     DASWTX010000869.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5022
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407526"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..771
                     /locus_tag="VGD38_13105"
     CDS             <1..771
                     /locus_tag="VGD38_13105"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY0729007.1"
                     /translation="PDFDPSKKYPLILNIHGGPHAAYGFIFDHEFQWMAAKGYVVLYP
                     NPRGSTSYGQEFGNIIQHNYPSDDYKDLMAGVDELIKRGYIDEKKMGVTGGSGGGLLT
                     NWTIGQTTRFAAAVSQRDIASWTDWWYTADFTLFHPSWFKAPPFEDPQDYVRRSPITY
                     VNKIQTPLMLILGEVDWRTPTGPGGEAMFRALKYRRIPTVMVRFPNESHELSRSGQPW
                     HRIERLQHIVGWFDKWIMGASKPEYDIGEVTRSTTTQQ"
     gene            777..1472
                     /locus_tag="VGD38_13110"
     CDS             777..1472
                     /locus_tag="VGD38_13110"
                     /EC_number="5.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047689 - aspartate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="HEY0729008.1"
                     /translation="MTKTLGLIGGTGPESTIEYYRLLIAKYREQADGNAPQLLVNSVN
                     LKQLIEWMNAGELPKVADYLSDAIDKLRRAGADLAALTANTPHIVFDELRERSQIPLV
                     SIVEATCDHAEAMSLRSAALFGTRFTMEAPFYPATFASSNVKLVLPNAEEQNYIHEIY
                     FGELLKDVFLPETRVKLLAIADTMKARDGVEAIILAGTELPLVIPDKEHNGMPLLDTT
                     RIHVERLIAEMLR"
     gene            1812..3455
                     /locus_tag="VGD38_13115"
     CDS             1812..3455
                     /locus_tag="VGD38_13115"
                     /inference="COORDINATES: protein motif:HMM:NF021355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-propeller domain-containing protein"
                     /protein_id="HEY0729009.1"
                     /translation="MLPAPALKKEAAESVTNTQHAGVDEGDIVKLHGDHLVILRRGRL
                     FTVAVSESTLKPVSSIDAFGPDIDPANTWYDEMLISGDTIVIIGYSYERDGTEVGLFN
                     VDAQGRLSYRSTYHLRSNDYFSSRNYASCLIGEKLIFYAPLYIYFGEEELLDSLPAVR
                     KWHKGATEKEFKRIAPAQRIYRPQASFDPEDGMALHTVTVCDLSNGGFDCQATSVLGP
                     EGNVFYVSPDSVYVWATSWNYDTDKSKSILFRMPLDGSGPTALRVDGSPVDQFSFLQS
                     DDYHLNVLVRSEGKGDGMWAAEVSEGDVALLRVPLNIFSDGSYKVPSTYYRRLAKPEG
                     DTFQNRFIGNYLLYGTGSGWYEPEKKKEPNDLHIVEWVGKRSHKLTLPHGVDRIEQMG
                     DDAVVVGTDGTDLHFSSIRLGMRPEVVSRYTRREASQGETRSHGFFYKPETAASGLLG
                     LPISLPGRPGYAQLFQSSAAILFLRNEGLQFSEIGELAAQAEKAVDDQCRASCVDWYG
                     NARPLFLRGRMFALLGYELVEGNVVDGRIRELDRMNYAP"
     gene            3938..>5022
                     /locus_tag="VGD38_13120"
     CDS             3938..>5022
                     /locus_tag="VGD38_13120"
                     /inference="COORDINATES: protein motif:HMM:NF013123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729010.1"
                     /translation="MYRRRLSSLSLLLILACAFSLVAQTTARRPLKVDDLNRFRNVGD
                     PQISPDGKWVAYTVSTTDVREDKSTTHIWMIGIDGSNDRQITFSNESESSPRWSPDGK
                     YLSFTSSRPGKARGNQVWLLDRNGGEAMQLTEIKGRLQGHEWSPDSKRLALVIGDPDP
                     ESEPTPTPQPGASVTPRVPKPIVIDRYRYKQDGQGYLLSGRHTYIYIFDIATKKLDRL
                     TKSKWDESSPSWSPDSKRIAFMSNHADDPDRDPSVQLYVADATPGATEKQLTPATTRA
                     GRSRPEWSPDGKWIAFLEGDEKKYGAYSMDRLALVPSDGSAAPTRLKAAEDLDRGVSS
                     PRFNADGKSIRFLVTDDRSVYPMKANL"
BASE COUNT         1102 a         1502 c         1408 g         1010 t
ORIGIN      
        1 cccgacttcg atccgagcaa aaagtatccg ctcatcctga acattcacgg gggaccacac
       61 gcggcgtacg ggttcatttt cgatcacgag tttcagtgga tggccgcgaa aggttacgtc
      121 gtgctgtacc cgaatccgcg cggcagcacg agctacggac aggagtttgg caacatcatc
      181 cagcacaact atcccagcga cgattacaaa gatctgatgg ccggtgttga tgaactgatc
      241 aagcgtggct acatcgacga gaagaagatg ggcgtcactg gcggcagtgg cggcggattg
      301 ttgaccaact ggaccatcgg acagacgacg cgtttcgcgg cggcagtgtc gcagcgcgac
      361 atcgcgagtt ggaccgactg gtggtacacg gccgacttca cgctgtttca cccgtcgtgg
      421 ttcaaggcgc cgccgtttga agatccgcag gattacgtac ggcgctcgcc gatcacttac
      481 gtcaacaaga tccagacgcc gctgatgttg attctcggcg aggttgattg gcgcacgccg
      541 actggtccag gcggcgaagc gatgtttcgc gcgttgaagt atcggaggat tccgacggtg
      601 atggtgcgtt tcccgaacga gtcgcacgag ctctcgcgtt cgggccagcc gtggcatcgc
      661 atcgagcgtc tgcagcacat cgtcggctgg tttgataaat ggatcatggg cgcttcgaaa
      721 cctgaatacg acattggcga agtgacgcgc agcacaacca ctcaacaata gaatctgtga
      781 ctaaaacact cggcctcatc ggcggcaccg gccccgaatc cacgatcgag tattaccgtc
      841 tgctgattgc aaagtatcgc gagcaggcgg acggtaatgc tccacagctt ctcgtcaaca
      901 gcgtcaacct caagcaactg atcgagtgga tgaacgcggg cgagttgccg aaggtcgccg
      961 actacttatc cgatgcgatc gacaagctgc gccgtgcagg cgccgatctt gccgccttga
     1021 cggcgaatac gccgcacatc gtcttcgatg aactacgcga acgatctcag atcccgctcg
     1081 tgagtattgt cgaagcaacg tgcgaccacg cagaggcgat gagcctgcgt tcggccgcgc
     1141 tgttcggcac tcgcttcacc atggaagcgc cgttctatcc cgcaaccttc gccagttcaa
     1201 atgtgaagct cgtcttgccg aacgcggaag agcagaacta cattcacgag atctatttcg
     1261 gcgagcttct taaagacgtc tttcttcccg aaacacgcgt gaagctcctc gccatcgccg
     1321 acacgatgaa agcccgtgac ggcgtggagg ccatcatcct cgccgggacg gaactgccgc
     1381 tcgtcattcc cgacaaggaa cacaacggca tgccgctgct cgacaccacg cgcatccacg
     1441 tcgagcgttt gatcgccgaa atgttgcggt gagtgtcgct ggtccaccgg gaactctgat
     1501 gtgccgtcgg tgtcaaagga atacgcaagt ttttggaaca cctgcgttct ccgaacatga
     1561 aaccgattgt gcttatactc ttcgccgccg ttatcgttgt cagtcttttg actctcaacg
     1621 ggatcacaac cgcctccgct cctccggtca caacgccacc cgccgcccgc cggaagatgc
     1681 aggcattcaa gtcggagcgg gaactcaaac gctacttccg gcggttagcc gcacgacaca
     1741 agcaggtgaa agcgaacgag gttcctcccc ttagcgcaaa cctcggttat gtcggtgtac
     1801 cagctgccgg tatgctccct gctcccgccc tcaaaaagga ggccgcagaa tcagtcacga
     1861 atacacagca tgccggcgtt gacgaaggcg atatcgtcaa gctgcacggc gatcacctcg
     1921 tgatacttcg ccgcgggcgc ctcttcactg tcgccgtcag cgaatcgacg ttgaagccgg
     1981 tttcgtcaat cgacgccttt ggcccggata tcgacccggc aaacacttgg tatgacgaga
     2041 tgctgatctc cggcgatact attgtgatca tcggctacag ctacgagcgt gacggcaccg
     2101 aagtcgggct attcaatgtc gacgcgcaag gcaggctcag ttatcggtcc acttatcatc
     2161 tgcgttcgaa cgactacttc tcttcacgca attacgcgag ctgtttgatc ggcgaaaaac
     2221 tgatcttcta cgcgccgctc tacatatatt tcggtgagga agagttgctc gattcgttac
     2281 ccgcggtgcg caagtggcac aaaggcgcga ctgaaaaaga gttcaaacgc atcgctcccg
     2341 cgcaacgcat ttaccggccg caagccagct tcgatcccga agacggcatg gcgcttcaca
     2401 ctgtaaccgt gtgcgatctt tccaacggcg gcttcgattg ccaggccacg tctgttcttg
     2461 gaccagaagg aaacgtgttc tacgtttcac ccgactcggt ctatgtttgg gccacctcgt
     2521 ggaactacga tacggacaaa tcgaaatcaa ttctgtttcg catgccgctc gacggttccg
     2581 ggccaacggc cctgcgcgtc gacggcagtc cggtcgatca gttctccttt ttgcaaagcg
     2641 atgattacca cctgaacgtt ctcgtgcgtt cagaaggaaa gggcgacggc atgtgggcgg
     2701 cggaagtcag cgagggtgac gtcgcgttgc tgcgcgttcc gctcaacatt ttctccgatg
     2761 gtagttacaa ggttccctca acgtactacc gccgtttggc aaagcctgaa ggcgacacat
     2821 ttcagaatcg gtttatcggc aactacttgc tctacggcac gggaagcggc tggtacgaac
     2881 ctgagaagaa gaaagagcca aacgatcttc atattgttga gtgggtcggc aagcgctcgc
     2941 acaagttaac gttgccgcat ggcgtggacc ggatcgaaca gatgggtgac gatgcagtcg
     3001 tggttggcac cgacggaaca gatctacact tcagttccat tcgtttagga atgcgtcccg
     3061 aagttgtgtc gcgttacaca cgccgcgagg cgtcgcaggg tgaaacgcgc agtcatggtt
     3121 tcttttacaa acctgaaact gcggcgagcg ggttgctcgg tctgcccata agcctgcccg
     3181 gccgtcctgg ttatgcgcag ttattccagt cgtctgcggc gatcctcttt ttgcgcaacg
     3241 agggacttca gtttagtgaa atcggagagc tcgcggcgca ggccgagaag gcagtcgacg
     3301 atcaatgccg cgcttcgtgt gttgattggt acggcaacgc gcgtccgctc tttttgcgcg
     3361 gccgaatgtt tgcgctgctc ggctacgaac ttgtcgaagg taatgtcgta gacgggcgta
     3421 tccgggaact ggaccgcatg aattacgcgc cgtaataagg ccacggacga acaccgactt
     3481 acacggactg agaacgaaag ctcggtaccc tccgtacctc ggctgccgcc ggatgtgcgg
     3541 caacgcgttc catgcttcgg ctctgccgcc ggatgtgagg cgaggctgtg cctcgccgta
     3601 cgccttcgga aacggaattg ggctaagccc ctggtacggc ctatggccca aaaaccgttg
     3661 ggggcagagc ccgaaccagg ggcctagccc aatttattgt taccaagcgc gaccggcggg
     3721 gcggagcccc gcctcacatc cggcggcaga gccgcaacgg agggttttcg gataaagcgc
     3781 accggaagcg tatttaagct gcacccgtaa caaatcaagt actcaaccaa ccaaaccatc
     3841 gcgtaagttg tacattgccc ggcttacgcg cgcttgctaa actctccgcc tgcgctgctg
     3901 tcaccagtta agtctttttc tcaggaggcc aaatcgcatg tatcgaagac gcctgtcttc
     3961 tctctccctg ctgctaatcc tggcgtgcgc tttttcgctc gtcgcgcaaa cgacggcccg
     4021 ccggccgctg aaggtcgacg acctcaaccg ctttcgcaac gtcggcgatc cgcagatttc
     4081 gcccgatggg aagtgggtcg cctacaccgt cagcaccacc gacgtgaggg aagacaaatc
     4141 caccacacac atctggatga tcggcatcga cggcagcaac gacaggcaga tcacgttcag
     4201 caacgagagc gagagctcgc cgcgctggag ccccgacggc aagtatctgt cgttcacttc
     4261 gtcacgcccg ggcaaggcac gcggcaatca ggtttggctc ctcgatcgaa acggcggcga
     4321 ggcgatgcag ttgactgaga tcaagggacg tcttcaggga cacgagtggt cgccggattc
     4381 aaaacggctc gccctcgtga tcggcgatcc cgatccggaa tcagaaccga cgccaacacc
     4441 acaaccgggt gcgtccgtaa caccacgcgt gccgaaaccc atcgtgatcg atcgttatcg
     4501 ctacaaacag gacggccagg gttatttgct ctccggccgc cacacttaca tctacatctt
     4561 cgacatcgct acgaaaaaac tcgaccgcct gacgaagagc aagtgggacg aaagctcgcc
     4621 atcatggtcg cctgacagca aacgcatcgc cttcatgagc aaccacgcgg acgatcccga
     4681 tcgcgatccg tccgtacaac tctacgtcgc cgatgccaca cccggcgcaa ccgagaaaca
     4741 actgacgcct gcaactacac gcgcgggacg ttcgcggccg gaatggagcc ctgacggcaa
     4801 gtggatcgca tttctcgaag gcgacgagaa gaagtacggc gcgtacagca tggatcgcct
     4861 cgcgctcgtg ccttcagacg gaagcgccgc acccacgcgt ctgaaagccg ccgaggatct
     4921 cgatcgcggt gtctcgtcgc cgcgcttcaa cgccgacggc aaatcgattc gttttctcgt
     4981 gactgacgat cgctccgtct atccgatgaa ggcgaatctc aa
//
LOCUS       DASWTX010000870         2298 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_205430, whole genome shotgun sequence.
ACCESSION   DASWTX010000870 DASWTX010000000
VERSION     DASWTX010000870.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2298
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205430"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..397)
                     /locus_tag="VGD38_13125"
     CDS             complement(<1..397)
                     /locus_tag="VGD38_13125"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY0729011.1"
                     /translation="MTDVPLENDSQDRAFSISVMEHVTPDVRRGGMQELARILKPGGL
                     AVLTVDMSMWFYMNRPLELVYESGLNFHGLMDLRWPTQRFGMFSDGLATGMPADVFGM
                     VLIKDGGEVETQYRRDGEPVECVEPYRVPT"
     gene            complement(390..812)
                     /locus_tag="VGD38_13130"
     CDS             complement(390..812)
                     /locus_tag="VGD38_13130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729012.1"
                     /translation="MRGALSRFATAEEVHSPEFAAINKVLDQISVTFKLPDHSDVNEL
                     RYPWSRGMLSKPEFYAARLWEYPYAIMAAELSPGLKVADIGCGMTAFTIYLKEHTGCD
                     VTGVDPDVFEAGLRYIGPRRQRRVYQAHRDQVFARRYD"
     gene            complement(793..2070)
                     /locus_tag="VGD38_13135"
     CDS             complement(793..2070)
                     /locus_tag="VGD38_13135"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0729013.1"
                     /translation="MTPIVKVENLGKVYQIGTRTAGYETLRESLTNAVRAPFATLRRR
                     VEKNEDVWALRNVSFDVMPGEVLGVIGQNGAGKSTLLKILSRITEPTTGRAELYGRAG
                     SLLEVGTGFHPELTGRENIFLNGAILGMTRPEIQRKFDEIVAFAELEKFLDTPVKRYS
                     SGMYMRLAFSVAAHLDPEILVVDEVLAVGDAAFQKKCLGRMRDISTEGRTVLFVSHNM
                     AAIRSLCGRGILLIKGEKVFEGPAGECVDRYLVEVTHNGTNEVDLKNAPRPKGIDTTL
                     RINTVRLGSRDGRPLVRSGDPLEVELVFTVSAPLEEVVVGMNVMSPDNVIIMECRNTH
                     SYGTIDQLAPGEYSIKCRVDQNMLSPGLYFMGVGARCAGKPLDYVPQAITFEIYSDES
                     LASLWLSNVAGVVRIPSHWTQPQAVIEHEGCFK"
BASE COUNT          483 a          707 c          640 g          468 t
ORIGIN      
        1 acgtcggcac gcgatacggc tcaacacatt caaccggctc gccatcgcgg cgatattgcg
       61 tctccacttc gccgccatct ttgatcaaaa ccatgccaaa aacgtccgcg ggcattcctg
      121 ttgcgaggcc gtcggaaaac atgccgaacc gctgtgtggg ccaacgcaga tccatgagac
      181 cgtggaagtt tagtcccgac tcgtagacca gttcgagcgg acgattcatg taaaaccaca
      241 tgctcatatc gacggtcagc accgcaaggc cgcccggctt gagtatgcgc gcgagctcct
      301 gcatgccacc gcggcgcaca tccggcgtca cgtgttccat cacgctgatc gagaacgcgc
      361 gatcctgcga atcattctcg agtggaacgt cagtcatatc gccgcgcaaa aacttgatcc
      421 cggtgcgctt gataaactct tcgctgacgc cgtggcccta tgtatctcaa gccagcctcg
      481 aacacgtccg gatcgacgcc ggtcacgtcg cagcccgtat gctctttcaa atagatcgtg
      541 aacgccgtca tgccgcagcc gatgtcggcg accttcaaac ccggactcaa ctcagccgcc
      601 atgatcgcgt aaggatattc ccaaagccgc gcggcataga actccggttt gctgagcatt
      661 ccgcgcgacc acggatagcg cagctcgtta acatcggaat gatccggcag cttgaaagtt
      721 accgagatct ggtccaacac cttgttgatg gccgcaaact ccggtgaatg aacttcctcc
      781 gcagtcgcaa acctacttaa agcacccctc atgttcgatt actgcctgcg gttgcgtcca
      841 gtgagacgga atccgcacta cgccagccac gttacttaac caaagcgagg ctaatgattc
      901 atcggaatag atttcaaacg ttatcgcctg cggcacgtag tccagcggtt tgccagcgca
      961 tcgcgcgccg acgcccatga agtaaagacc cggactcagc atgttctgat cgacgcgaca
     1021 cttgatcgag tattcgccgg gcgcaagctg atcgatcgtg ccatacgaat gcgtgttgcg
     1081 gcactccatg atgatcacgt tgtcaggcga catgacgttc atcccgacca cgacctcttc
     1141 gagcggcgcg gaaacggtga acaccagctc tacctcgagc ggatcgccgg agcgcacgag
     1201 cggccgcccg tcgcgcgagc cgagtcgaac ggtattgatc cgcaaagtgg tatcgatacc
     1261 tttgggccgt ggcgcgttct tcaggtccac ttcgttggtg ccgttgtgcg tcacctcgac
     1321 gagataacga tcgacgcact cgccggccgg accttcaaat accttttcgc ctttgatcag
     1381 cagtatgcca cgtccgcaaa gactgcggat cgcggccatg ttgtgactga caaagagaac
     1441 ggtgcggccc tcggtggaga tgtcgcgcat gcggccgagg cacttctttt gaaacgccgc
     1501 gtcgccgact gcgagcactt cgtcgaccac gagaatttcc ggatcgagat gcgcggcgac
     1561 ggaaaaagcg agccgcatgt acatgccgct cgaatagcgt ttcaccggcg tgtcgagaaa
     1621 cttttcgagc tctgcaaagg cgacgatctc gtcgaacttg cgctgaatct cgggcctggt
     1681 catgccgagg atcgcgccgt tgagaaagat gttttcacgt cctgtgagtt cgggatgaaa
     1741 gcccgtcccg acttcgagca ggctgccggc gcggccgtaa agctcggctc gtccggtggt
     1801 cggttcggtg atgcgcgaaa ggattttgag gagcgtggat ttgccggcgc cgttctggcc
     1861 gatgactccg agcacctcgc ccggcatcac gtcgaaactc acgttgcgca gcgcccaaac
     1921 atcctcgttc ttttcgactc tgcgccgcag cgtcgcgaat ggagcacgaa ccgcgttcgt
     1981 cagcgactcc cgcaacgttt cataaccggc tgttctcgtc ccgatctgat aaaccttacc
     2041 gaggttttca actttaacga ttggtgtcac agaaaacagt ctcgttcgtg ttcaaggtcc
     2101 atgattgaag tgtctttggc gccgctccgc cccgcaggat gaagttcatt cgaagacgac
     2161 tcgcagcagc tcggccggat gtgcggtcgg cccgaaggaa tactggctac ggctacgccg
     2221 ccggatgcga gacgacgcgc tgcggctacg ccgccggatg tgacacgacg cgctgcggct
     2281 acgccgccgg atgtgaca
//
LOCUS       DASWTX010000871         1975 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_228478, whole genome shotgun sequence.
ACCESSION   DASWTX010000871 DASWTX010000000
VERSION     DASWTX010000871.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1975)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1975)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1975
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228478"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..492
                     /locus_tag="VGD38_13140"
     CDS             <1..492
                     /locus_tag="VGD38_13140"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY0729014.1"
                     /translation="SDLLRQRHNLTSNEPDDFTVRNMTDVAEAANETSKTMTILLACI
                     AGVSLLVGGIGIMNIMLVSVTERTREIGIRMAIGARSSAVRSQFLIESIVLSLTGGTI
                     GILLGIGLSLAIPAMLGWPTLVSMMAIVGSVVFSVAVGIFFGYYPARKAAALDPIEAL
                     RYE"
     gene            569..>1975
                     /locus_tag="VGD38_13145"
     CDS             569..>1975
                     /locus_tag="VGD38_13145"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEY0729015.1"
                     /translation="MRLRCSYQRRSVLCLVLIGVLTSSLVTSAQRRGEPLQPKRPRLV
                     LLIVVDQFRYDYLERFGDLFGPNGLRRLQRDGASWANANYDHFPTYTAPGHSSMMTGA
                     FPAESGIIGNEWIDRVSGRRISSVSDDNEKILGSGDPKEVAASPRKLLSSTVGDELRL
                     ITNDRSKVIGISAKDRSAILPAGRHANAAYWLSNTGTMASSTYYFNQLPAWVAEFNST
                     KPADKYFGAKWERLLSESEYVKRAGPDSTPSEKVTASGDTNSFPHTITGGAKEPNLAF
                     YTHLDHSPFSNEVLLQFARSAIASEQLGQDDDTDVLTISFSANDYVGHRYGPYSHEAM
                     DAVLRVDGQIAKLLDFVHEQVGLANTLVAFTADHGVSPIPELAADLGLGGARVKASDI
                     LAAVRTALAAHYNPEGLKPDPTADYILKYNNWGVETDAYINGNIYFNYAALDRDNVDL
                     SEISRVVAAATLKITGVAR"
BASE COUNT          437 a          568 c          551 g          419 t
ORIGIN      
        1 agcgatctgc tgcgccagcg tcacaacctg acgtcgaacg aacccgatga tttcacggtt
       61 cgaaacatga ccgacgttgc ggaagccgcg aacgaaacca gcaaaacgat gacgatcctg
      121 ctcgcgtgta tcgcaggtgt gtcgctgctc gtcggtggta tcggcatcat gaacatcatg
      181 ctcgtgtccg tgacggaacg aacacgcgag atcggtattc gcatggcgat cggcgcgcgc
      241 tcgtcggcgg ttcgcagtca gttcctgatt gagtcgatcg tgttgagttt gactggggga
      301 acgattggta ttcttctcgg catcggcctg tcactcgcga tcccggcgat gctcggttgg
      361 cccacgctgg tgtcgatgat ggctatcgtc ggctcggttg ttttctcggt cgcggtcgga
      421 attttcttcg gctactaccc ggcgcgcaaa gcggcggcgc tggatccgat cgaagcgcta
      481 cgctacgagt aaaaggaaac aagctgtcaa catcaattta acgagcgagg tctacacgtt
      541 ttaggtgtgt tcggttaaca tcgccgccat gcgcttgcgt tgctcctatc agcgaagatc
      601 tgttctttgt ctggttttga ttggtgttct caccagttcc ctcgttactt cagcccaacg
      661 acggggagaa cccctccaac caaaacgtcc tcgcctggtc cttctgatcg ttgtagacca
      721 gtttcgctac gactacctcg aacggttcgg ggacttgttt gggccaaacg gcttgagaag
      781 gttgcagcgc gacggcgctt cctgggccaa cgccaattac gatcattttc cgacgtacac
      841 cgcgcccggt cacagctcca tgatgacggg cgcttttcca gccgagtcgg ggattatcgg
      901 caacgagtgg atcgatcgcg taagcgggag acgcatcagc agtgtttcag acgacaacga
      961 aaagattctc ggcagtggag atccgaagga agtcgccgcg agtccacgca aactgttgag
     1021 ctcgactgta ggcgacgaat tgagactgat cacaaacgat cgctcaaaag tcatcggcat
     1081 ttctgctaaa gaccgctcag cgatcctgcc ggccgggcgc cacgccaatg ctgcttactg
     1141 gttgagcaac accggcacga tggcctcttc gacgtattac ttcaatcaac taccagcgtg
     1201 ggtcgcggag ttcaatagca cgaagccggc cgacaaatac ttcggcgcga aatgggaacg
     1261 tttactttcg gaaagcgagt atgtaaaacg cgccggacca gactcgacgc cttcagaaaa
     1321 agtcactgcc tcaggggaca caaactcgtt tccccatacg atcaccggcg gcgcgaaaga
     1381 gccaaacctc gcgttctaca cccatctcga tcattcgccc ttcagtaacg aagtgctgct
     1441 tcaattcgcc cggtcggcaa ttgccagcga gcaactcggg caagacgacg acaccgatgt
     1501 tctcaccatc agcttttcag caaacgacta cgtcggacat cgctatggtc catacagcca
     1561 cgaggcgatg gatgcggtgc tgcgggtgga tggccagatc gcgaagttgc tggacttcgt
     1621 gcacgagcaa gtgggactgg ccaacacgtt ggttgccttc accgcggatc acggtgtctc
     1681 accgattccg gaactcgcgg cggacctcgg tctcggcggc gcgcgcgtaa aagctagcga
     1741 tatcctcgcc gcggttcgca cggcactcgc cgctcattac aacccggaag gccttaaacc
     1801 ggacccaact gcggattaca ttctgaagta caacaactgg ggagttgaga ccgacgcgta
     1861 tatcaacggc aatatctatt tcaactacgc cgcactcgat cgcgacaacg tcgatttgag
     1921 cgagatctcg cgagtggtag ccgcagccac gctgaaaata accggcgtcg cgcgg
//
LOCUS       DASWTX010000872         3780 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_101142, whole genome shotgun sequence.
ACCESSION   DASWTX010000872 DASWTX010000000
VERSION     DASWTX010000872.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3780)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3780)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3780
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101142"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..595
                     /locus_tag="VGD38_13150"
     CDS             <1..595
                     /locus_tag="VGD38_13150"
                     /inference="COORDINATES: protein motif:HMM:NF015013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lipid II flippase MurJ"
                     /protein_id="HEY0729016.1"
                     /translation="SAMAFLALGDVITAVLYQTGKFTRADTIYVWTILAGSAVGLLAS
                     TLGRLYSSTYYALQDTKTPLIFAVLRVALTTVVGYLFSIHLPRLLGIDPRLGVAGLTI
                     SSGIAGWVEFVLLRRSLNQRIGRTGLSLSYAAKLWIGALAGAAVGWALKLLVFNWHPI
                     PLAIVVLGGYGVTYFAVGYLFGVAQARLIIGRLLRFR"
     gene            689..892
                     /locus_tag="VGD38_13155"
     CDS             689..892
                     /locus_tag="VGD38_13155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729017.1"
                     /translation="MYTMPMIFPLDGTGRDYVLQDKDGQVVGSGSREVCERLLRLIGM
                     GLSPGNENTPQAQAPNIRAAITI"
     gene            1090..2763
                     /locus_tag="VGD38_13160"
     CDS             1090..2763
                     /locus_tag="VGD38_13160"
                     /inference="COORDINATES: protein motif:HMM:TIGR00196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052855 - ADP-dependent NAD(P)H-hydrate
                     dehydratase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HEY0729018.1"
                     /translation="MQPVIFAQQMREIDRLTVENYHTTSLLLMESASAACLEAIRTRF
                     NGELAGKRALVLCGKGNNGGDGAALARGLCRASVQCDVVLFGKFTETSGDAHTNFESV
                     RRLASFEAGSPEAPAPLTFIECENVTAWEQIAKPRRTYDVIVDALFGTGLTRPLEGVF
                     LKVIQHLEMLKQARERAGGARPLLLSIDIPSGLNADKAEPIGPAVRADVTVTFTAPKP
                     ANVLLPASDFGGELIVADIGSPASLIAAMKPWLFLVEAEDVQPWLVSTRYTPGSYKNT
                     HGHVLIAAGSRGYSGAAALSGNAAMRSGAGLVTIATPSSAQPLVATRAMPEVMTTALA
                     ETDRGAASDEGVDHFLDLASKATVVAVGPGLTSDDERTRRFVRGIVERRSRPCVIDAD
                     GLNCLAPWPTELSGSEAPLILTPHPGEMLRLMGTDDKAALADRPTAARDFAIAHKVIV
                     VLKGSRPLVAAPDGRVFINPTGNAGLGTAGSGDTLTGLISGFLAQAYGTLGNDADPLA
                     ATIAALYVGGLAGDLAARKLGMRTMVASDIREHFSDAIRQLDPEGEQPK"
     gene            2760..3230
                     /gene="tsaE"
                     /locus_tag="VGD38_13165"
     CDS             2760..3230
                     /gene="tsaE"
                     /locus_tag="VGD38_13165"
                     /inference="COORDINATES: protein motif:HMM:NF014426.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEY0729019.1"
                     /translation="MNSAPTHGDDATIPEGEFTSSSPDETFNYGHQLGSRLQGGEILL
                     LSGPLGAGKTIFVKGICAALGIDEEDVTSPSFTLVNPYAGRLQLYHLDLYRLDEGASA
                     AHAVDLDELLSDERAVIVIEWAERMGPYPLPSNVYRISLSGDGDSPRTLSIKRL"
     gene            complement(3217..>3780)
                     /locus_tag="VGD38_13170"
     CDS             complement(3217..>3780)
                     /locus_tag="VGD38_13170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729020.1"
                     /translation="CIPNQTPILIDVSGNGFNLTSSATGVDFNLNNIGGKEKLSWTTA
                     NSDDAWLVIDRNGNGAIDNGTELFGDLSPQPELSAGERKNGFRALAEYDKTQNGGNND
                     NQIDNRDTVFSSLRLWQDKNHNGISEANELRALLSLDVAVISLDYKSSKKIDQYGNQF
                     SYRAKVKDSQGRQAGRWAWDVYLVRAF"
BASE COUNT          723 a         1159 c         1081 g          817 t
ORIGIN      
        1 ttcggcgatg gcgtttctcg cgctcggcga cgtgatcaca gcggtgcttt atcaaaccgg
       61 taaattcacg cgtgccgaca cgatttatgt ctggactatt ctcgcgggct cagcggtagg
      121 cctgttggcc tcgactctcg gtcgtcttta ttcgtccacc tactacgcgc ttcaggacac
      181 taagacgccg ctgatcttcg cggtgctgcg agtggctctg acgacagtcg tcggttatct
      241 cttctcgatt cacttgccgc gtctcctcgg gatcgatccg cgtctcggtg tggcaggctt
      301 aacgatctct tcgggtatcg cggggtgggt cgagttcgtg ttgttgcgcc gaagtctcaa
      361 tcagcgaatt ggacgaacgg gattgtcgct ctcgtatgca gcgaagcttt ggattggcgc
      421 cttggccggt gcagccgttg gctgggcgtt gaagctgctg gttttcaact ggcacccgat
      481 tccactcgcg atcgtcgtgc tcggcggcta cggcgtcacg tatttcgccg tcggctacct
      541 ctttggcgtg gcccaggcga ggctcatcat cggccgcctg ctccgcttcc gttgaccggg
      601 aactggaaaa cgttgtttat tgacggtgtt cttccagaac agggagcccc aatttccctg
      661 ttcgaacacg taatcaggag tgcccccaat gtacacgatg ccgatgattt tcccgcttga
      721 tggaaccggt cgggattacg ttcttcagga caaagacggg caggtggtag gttccgggtc
      781 acgcgaggtg tgcgaacggc tgttgaggtt gatcgggatg ggactttcgc ccggcaatga
      841 aaacacgcct caggcgcagg cgcccaacat ccgcgccgcc atcaccattt agctctgagt
      901 tttctggaac aggcccactc ctgttccaga ataattctca aaaataaatt tttgagaatt
      961 tctggagacc gccggccatt cgatctttct cttaagtatc ctggaaaaag gacagttggt
     1021 gcagcggcag gcaaggcggg cggcggcttt ggggccgctt tctttattgg gacttgctat
     1081 catcctcccg tgcaaccggt aatcttcgcc cagcagatgc gggagatcga tcgtctcacc
     1141 gtcgagaact accacacgac atcactgctg ctcatggaat ccgccagcgc cgcgtgcctg
     1201 gaagcgattc gcacgcgttt caacggcgag ttggccggca aacgagccct cgttctgtgc
     1261 ggcaagggca acaacggcgg cgacggcgcg gccctcgcgc gcggcctgtg ccgtgcgagc
     1321 gtgcagtgtg acgtggtcct gtttggcaaa ttcaccgaaa caagcggcga tgcccatacg
     1381 aacttcgaat ccgtgcgccg cctcgcttcg ttcgaagccg gatcgcccga agcgcctgcg
     1441 ccgctgacgt tcatcgagtg tgaaaacgtc acggcctggg aacagatcgc gaagccccgc
     1501 cggacgtacg acgtgatcgt cgacgcgctc ttcggcaccg gtctaacacg tccgctcgaa
     1561 ggcgtgtttc tgaaagtcat tcaacatctc gaaatgctca aacaggcgcg cgagcgtgcc
     1621 ggcggcgcgc ggccgttgct gctttcaatc gacattcctt ccggcctcaa cgccgacaaa
     1681 gcggaaccga tcggaccagc cgtgcgcgcc gatgtgacgg tgacgtttac cgcgccgaag
     1741 cccgcgaacg tgctactgcc cgcgagcgac tttggcggcg aactgatcgt cgcggacatc
     1801 ggctcgcccg cgtcgttgat cgccgcgatg aagccgtggc tgtttctggt tgaagcggaa
     1861 gatgtgcagc cgtggctcgt cagcacgcgt tacacgcccg ggtcttacaa gaacacgcac
     1921 ggtcacgtgc tcatcgccgc cggatcgcgt ggctattcag gcgcggcggc gttgtccgga
     1981 aacgcagcga tgcgaagcgg cgcaggactg gtaacgattg cgacgccgag ttcagcgcag
     2041 ccgctcgtgg cgactcgcgc aatgccggaa gtgatgacaa cggcgctcgc ggaaaccgat
     2101 cgcggcgcag caagcgatga aggtgtcgat cactttttgg atctggcgtc gaaagcgacc
     2161 gtcgttgccg ttggaccagg actcacgtcg gacgacgaac gcacgcggcg gtttgtgcgt
     2221 ggcatcgtcg aacgtcgctc gcgaccgtgt gttatcgatg ctgacggatt gaactgtcta
     2281 gcgccgtggc ccacggagct gagtggttca gaagcgccgt tgattctaac accgcatccg
     2341 ggcgagatgc ttcgactgat gggaaccgac gacaaggccg cgctggccga ccgtcctaca
     2401 gcagcgcgtg acttcgccat cgcgcacaaa gtgatcgtcg ttttgaaagg ttcgcgaccg
     2461 ctcgtcgcag caccggacgg ccgtgtgttc atcaacccaa ccggcaacgc cggtctcggc
     2521 accgccggct ccggcgacac gctcaccggc ctgatctccg gctttctcgc acaggcttat
     2581 ggaacactcg gtaacgacgc cgatccactc gccgctacca tcgccgcact ctacgtcggc
     2641 ggtctcgcag gcgatctcgc cgcccgcaaa ctcggcatgc gcacgatggt cgcctccgac
     2701 atccgcgaac atttctccga cgcaattcgc caactcgacc cggagggaga acaaccgaaa
     2761 tgaacagcgc cccaacacac ggcgacgacg cgacgattcc cgaaggcgag ttcaccagta
     2821 gctctccgga cgagactttc aactacggcc atcaactcgg ctcgcgtctg caaggcggtg
     2881 agatcctgtt gctgagtggt ccactcggcg cgggcaagac gatcttcgtg aaaggcatct
     2941 gcgcagcact cggcatcgac gaagaagacg tcaccagccc ctcgttcact ttagtcaatc
     3001 cctacgccgg acgccttcaa ctctaccatc tcgatctcta tcgtctggac gaaggcgcca
     3061 gcgccgctca cgccgtcgat ctcgacgaac ttctctccga cgaacgcgcc gtcatcgtca
     3121 tcgagtgggc cgaacgcatg ggcccttatc ccctcccctc aaacgtctac cgcatctcac
     3181 tctccggcga cggcgactcc ccccgcaccc tctcgatcaa aaggctctaa ccaaataaac
     3241 atcccacgcc catcgtcctg cttgtcggcc ctgcgagtct ttcaccttgg cgcgataact
     3301 aaactgattg ccatactgat cgatcttctt tgacgatttg taatcgagac tgatcacggc
     3361 aacgtctagc gatagcaacg cgcgtaattc atttgcttcc gagatcccgt tgtgattctt
     3421 gtcctgccac aaccgcagac tgctgaaaac ggtgtctcgg ttatcgattt ggttgtcgtt
     3481 gttgccgccg ttttgtgtct tatcgtattc ggcgagagcg cggaacccgt tcttcctctc
     3541 accggctgaa agttcaggtt gaggtgaaag atcaccaaag agttcggtgc cgttatcaat
     3601 cgcaccgttc ccgttgcgat cgatgactaa ccaggcgtca tcggagttgg ctgtggtcca
     3661 actcaacttt tctttgccgc cgatgttgtt cagattgaag tctacgcctg tggcactact
     3721 cgtaagattg aagccgttgc cggacacgtc gatcaagatt ggagtttggt tgggaataca
//
LOCUS       DASWTX010000873         2543 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_34695, whole genome shotgun sequence.
ACCESSION   DASWTX010000873 DASWTX010000000
VERSION     DASWTX010000873.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2543
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34695"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2178)
                     /locus_tag="VGD38_13175"
     CDS             complement(<1..2178)
                     /locus_tag="VGD38_13175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729021.1"
                     /translation="MPRFVSLRTLVSVNLSSITSSTRFRLQRLVSVFLILVLASSSAP
                     AAPRLIVDVWKETSTDLLFLIHRSELLALIQNGNRGVVRQEKQEERDAKIARIEIYPD
                     SASLDVSDKIHFSAAAFDSNGDQVIGAKIKWRAEESTEHHPAKITRTGEFQAVTPGSF
                     IVTAEAKGHSAQATITVRRGAPRDTKKPPLSKKSVSSRDLPNPAEMEEPAPGADGRVA
                     VNARRKRDSKTRRAHAPAPYMPSGMGWDNTNYWSADDAGHLRGAPNGTTLNAGAGNGN
                     FQINAPVLSLAGRGINVSLNLVYNSKVWNKAGSQIAWDNDLDWPATGWSLGFGRVLSM
                     GTNGGCMIVEADGTRHSYAGTISNYSWGQYFSGHTTDGTFIDYTCATNTNGVVTSANA
                     SLPTGTVVEYYAYSLGQGMAYPTRVTDADGNYITMTYTASQGRMQTLTDTLGRVINFH
                     YGPNNLLTAITAPGYGGGTRTVVRIHYKQITLSHGWSGLTPRVPTPFPWVIDAIYYPG
                     TNTGYWFGDSDSYSSYGMIAKVVEARGMSFSASSLNDMGTVTAPSANQITKKEVYNYP
                     MTPNYSLTDAPTYTTCVETWTRDGVNTDSATTTYALNMQGNPRTVTVTLPNGTQNVQY
                     SYNAPGQYNDGLVYLDETKNAAGTVIQSSSTSWEPGYNDTPRPYRVQSTNEKGQTSKQ
                     EFSYTGYYNQVTEQRDYDFGGNLMRSTRTSYENSWDYMNTRHIF"
BASE COUNT          508 a          651 c          775 g          609 t
ORIGIN      
        1 gaagatgtgg cgtgtgttca tgtagtccca actgttctcg taagacgtgc gcgtcgaacg
       61 catcaggtta ccgccgaagt cgtagtcacg ttgttcggtc acctggttgt aatagcctgt
      121 gtaactaaac tcctgcttgc ttgtttgtcc tttctcatta gtcgactgaa cgcgatacgg
      181 ccggggtgta tcgttgtatc cgggttccca cgaagtagag ctactttgaa tgactgtccc
      241 cgcggcgttt ttagtttcgt cgaggtagac caggccatcg ttatattggc ccggcgcgtt
      301 gtaggagtat tgaacgttct gggtcccgtt cggcaacgtg acggtcacgg tgcgcgggtt
      361 tccctgcatg ttgagtgcgt acgttgtggt tgccgaatcg gtgttgactc cgtcgcgcgt
      421 ccaggtttct acacacgtcg tataggtcgg agcgtcggtc aagctgtagt tcggagtcat
      481 cgggtagttg tagacttctt tcttcgtgat ctgattcgcc gaaggcgcag tcactgtacc
      541 catgtcgttg agagagcttg cggaaaatga cataccccga gcttccacca cctttgcgat
      601 cattccgtaa gacgaataag agtcagagtc gccaaaccaa tagcccgtat tcgttccggg
      661 gtaatagatc gcgtcgatca cccacggaaa tggagtggga actcgtggcg tcagaccgga
      721 ccagccgtga ctcagcgtga tctgtttgta gtggatcctg acgacggtcc gtgtaccacc
      781 gccgtagccg ggtgcggtga tggcggtaag caggttgttg ggaccgtagt gaaagtttat
      841 tacgcggccc agggtgtccg tcagtgtttg catgcggccc tgactagccg tgtaggtcat
      901 ggtgatgtag ttgccgtcgg catcggtaac gcgcgtgggg taagccattc cctgtccgag
      961 actataagcg taatactcga caaccgttcc cgtaggtagg ctggcattgg cgctggtaac
     1021 aacaccattg gtgttagtcg cgcaagtgta gtcgatgaag gtaccgtcag ttgtgtgacc
     1081 ggaaaaatat tgtccccatg aatagttgga tatcgtgccg gcatagctgt gacgcgtgcc
     1141 gtcagcctcg acgatcatgc agccgccgtt agtgcccata ctgagcacgc ggccaaagcc
     1201 gagtgaccag cccgtcgcgg gccagtcgag atcgttatcc caggcgattt gagagccggc
     1261 tttgttccag acctttgagt tgtagaccag attcagcgac acattgatgc cgcggcctgc
     1321 gaggctcagc actggagcgt tgatctgaaa attaccgttg cctgcgcccg cgttgagagt
     1381 ggttccgttt ggcgcgccgc gtagatgacc ggcgtcgtca gcggaccagt agttcgtgtt
     1441 gtcccagccc atacccgaag gcatgtaagg agcgggagcg tgggcccggc gggtttttga
     1501 atcacgtttt cgccttgcgt ttaccgcaac gcggccgtca gcgccgggtg ccggctcttc
     1561 catttccgca gggttcggca gatcgcgtga cgagacagat tttttgctga gtggcggttt
     1621 ctttgtatcg cgcggcgctc cgcgacggac tgtgatcgtt gcttgagctg agtggccttt
     1681 cgcttcagcc gtcacgatga acgagccggg agtcacagct tgaaactcgc cggtgcgcgt
     1741 gattttcgcc gggtggtgtt ccgtgctttc ctctgcgcgc catttgattt tcgcgcctat
     1801 gacctggtcg ccgttgctgt cgaaagcagc cgccgagaag tggatcttat cgctcacatc
     1861 cagcgacgca ctgtccggat aaatctcgat gcgcgcaatc ttcgcgtcgc gctcctcctg
     1921 cttttcctgg cgcacgacgc cgcgattgcc attctgtatc agcgctaaaa gctcacttcg
     1981 atgaatcagg aagagcaagt cagttgatgt ttccttccag acgtcaacga tcaatctcgg
     2041 agcggcggga gcagacgagg aagccaacac gaggatcaga aacacgctga ccaaacgctg
     2101 cagccggaaa cgagtggatg aagtgatcga ggacaggttg acagacacga gtgtgcgcag
     2161 tgagacgaat ctgggcatga gtagactcct aagttagacc aggcagtgac cggcctggat
     2221 cactagtgac catggatgtg ccgctagaaa gcagtcaggt tttaggggca atctcacaat
     2281 gatcaagatg ggagcaagat cacgtcaacg tgagatcgcc ggggagttag cgcgcggcac
     2341 tctatacgag cccgcatcac gtgtcaacga gaaagtttta tctccgcgaa cagaagatca
     2401 taaatgtaac tagtggagta gaaatgcgtc tactgtagcg atctgaggat caattctgcg
     2461 gcgcgttcgg aggcgccggt gtcgccgagt ttatgggcca cggcggcgag ttgggcccgc
     2521 gcggttttgt tggcgttggg atc
//
LOCUS       DASWTX010000874         3540 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_56432, whole genome shotgun sequence.
ACCESSION   DASWTX010000874 DASWTX010000000
VERSION     DASWTX010000874.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3540
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56432"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..844
                     /locus_tag="VGD38_13180"
     CDS             <1..844
                     /locus_tag="VGD38_13180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729022.1"
                     /translation="AFVPGGRSDSHCGAGRGSQRLTEAQQRGTGLAYMTAFFRAYVGG
                     ETQFLPILTGDAPPPASAQTNNLFVSYHAPDNPELRLDVNRLLANNNLAFNRLGGAVT
                     QTGLTPYELCGGNDPQPPTCLPDQPNARQPHTTPSARSAARGLSQLKTGWNNLTGNYR
                     NEIPIGFSNVSGFEALQFRVGVNFTDPRNLEGLAQNFRVVLTDAAGATASVRVSDVSS
                     ALYFPPGSVGPVPKLVLNTVRIPLSAFGGVNLHNIRAVEFTFNEQAQGAVLVTDIAFA
                     SAPR"
     gene            1147..>3540
                     /locus_tag="VGD38_13185"
     CDS             1147..>3540
                     /locus_tag="VGD38_13185"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY0729023.1"
                     /translation="MIKATRTLILLAAVVALFCCPVLAQTSGSIAGEVKDEKQAVING
                     ATVTLRNVLTNETRTAQTNSDGRYHFTGVPVGAYELTVESTGFAKYQQSGITLALNQA
                     AVVDVIMKPGAVQEVVNVVENASMLNTSSAEVGTRFDERRLAELPLATTRSVYNVALS
                     APGVSQINSGQSQFAGGTNFSANGGRTRSNNFMIDGQDNNNFGVAGSTIPLNNPDAIQ
                     EVRLVTNQFSAEYGRNSSAVFNAITRSGTNDYHGSAFWFHNDNALNACSNTQKAGVNG
                     FCNPNATDPSRRKAPFRIENQLGGTIGGPLHLPRFGEGGPGIINGRDRTFFFFSVQRW
                     WDRQLGVGQALNGAPTAEGKAILNAAAGDLPQVRALLDFLPAAGTPLGRTASFVRNGQ
                     TFVVPLGSLTGSQSSTYDDWQTSIRIDHRFSGKHSLNGRYLYQDSGAAGSIPGVAASQ
                     ITPPGFSSIVPSRTQGVNLQFTSVLSPKWLNEIRGAFLRSASATLALDPRSEQIPSME
                     VVELGLAGFNAGPTRTAIGLGVNLPQSQVRNTFQLQDNISYTTGNHAWKFGVDIRRNQ
                     LHQLFKPTTRGLLEYASLDFLVKDFATRANINKDLPGTAQVLHNDWHDFFFFAQDEWR
                     VTPHFTLTLGVRYENPGQPIQDLVDFNQPVIAAFGGDPRFVLTPIPGRDTNNWQPRVG
                     FNWNPQTRNDGVIGWLTGGDKLVVRGGFTRTHDYAFTNIALNIWSSFPFVAAVASFPT
                     TSTTPLGVPPVNCNVTPRPASCVTVIPNAFSVLKNPPFDPATVNRTIVDENFHMPVYD
                     "
BASE COUNT          760 a         1069 c          949 g          762 t
ORIGIN      
        1 agcgtttgtg cccggcgggc gttccgattc gcattgcggc gccggcagag gaagtcaacg
       61 gctgaccgaa gcacagcaac gcggcaccgg cctcgcttac atgaccgcat tcttccgcgc
      121 gtacgtcggc ggcgagactc aattcctgcc gattctcacc ggcgatgcgc caccgcccgc
      181 gtcagcacaa acaaacaatc tgttcgtctc ttatcacgcg cccgataatc ccgaactgcg
      241 actcgacgtc aaccgtttgc tcgccaacaa caacctggcg ttcaaccggc tcggcggcgc
      301 ggtgacgcaa accggtttga cgccttacga gttgtgcggc ggtaacgatc cgcaaccccc
      361 gacgtgtctg ccggatcaac caaacgctcg acaaccgcac acaacaccaa gcgcacgatc
      421 ggcagctcgt ggtttgagtc aactcaaaac cggttggaac aacctgaccg gaaactaccg
      481 gaatgaaata ccaatcggtt tcagtaacgt ttcgggattc gaggcgcttc agtttcgcgt
      541 tggcgtgaac ttcaccgatc cgcgtaatct cgaaggcctg gcccaaaact tccgcgtggt
      601 gttgaccgac gccgcgggcg cgactgcctc ggtacgcgtc agcgatgttt cgtccgcgtt
      661 gtactttcca ccgggttcgg ttggtcctgt tcccaagctc gtgctgaaca cggtacgcat
      721 tccgctgagc gcttttggcg gcgtgaattt acataacatc cgtgcggtgg aattcacctt
      781 taacgaacaa gctcagggtg ctgttttggt cacagacata gccttcgctt cggcgccgcg
      841 atagcggtcg aagcagggtc ctaacttgca gattttgaat acgatatgaa tttttgggcg
      901 gcagtggctc ccatgccact gcccgtccaa accgttaagt tactcaatac cgcgctgtta
      961 gtcataaacg ggccaaaagt ccatgcttgg aatacgcatt gcatctacaa gcgcgactta
     1021 tcccgtcttt agcaattggc acagcggaat atttacctgc gttctccggc ggataaggct
     1081 ctcatcccag tcgcagaaat aaaaaaacca tcaccggtcc gtggttgttc gaaaggagaa
     1141 tgctaaatga tcaaggcaac tagaaccctc atactactgg cggcagtagt tgcactattc
     1201 tgctgtccag tactcgcgca aacttcaggc tccattgcgg gcgaagttaa agacgaaaaa
     1261 caggctgtca tcaacggcgc tactgtcacg ctgcgcaacg tcttaaccaa tgagacgcgc
     1321 acggcgcaga ccaactccga tggccgttat cactttacgg gcgtgcccgt gggtgcttat
     1381 gagctcactg tcgagagcac cggctttgct aaatatcagc agtcgggcat cacgctcgcc
     1441 cttaatcagg cggcggtagt cgacgtgatc atgaaacccg gcgccgttca ggaagtcgta
     1501 aacgtcgtcg agaacgcctc gatgttgaat acttcaagcg ctgaagtcgg cacgcgtttc
     1561 gatgaaagac gcctggccga acttccgctc gccacaactc gaagcgttta caacgttgcg
     1621 ctatcagcgc cgggcgtaag ccagattaac tccggccaat cgcagtttgc gggtggaact
     1681 aacttctccg ccaacggcgg acgcactcgt tccaacaact tcatgatcga tggtcaggac
     1741 aacaacaact tcggtgttgc cggttcgact atccctctga acaatcctga cgcgattcag
     1801 gaagtgcgtt tggtgacgaa tcagttcagc gccgaatacg gccgcaactc gagcgcggtg
     1861 ttcaatgcaa tcacgcgcag cggaacgaac gactatcacg gctccgcgtt ctggtttcac
     1921 aacgacaacg ccttgaatgc ctgcagcaac acgcagaagg ccggcgtcaa cggtttctgt
     1981 aatccaaacg caaccgatcc gtcgcggcgc aaagcgccgt tccgcattga gaatcaatta
     2041 ggcggaacga tcggtggccc acttcatctg ccgcgcttcg gcgaaggtgg accaggcatt
     2101 atcaacggcc gcgatcgaac gttcttcttc ttctcggtgc aacgttggtg ggatcgccag
     2161 ctcggcgttg gccaggcact aaacggcgcg ccgaccgccg aaggcaaagc gattctcaat
     2221 gcggccgcgg gcgacctgcc ccaggttcgt gcattgctcg actttttgcc ggctgctggt
     2281 actccgttgg gccgcacagc gagctttgtg cgtaacggcc agacgtttgt tgttccactc
     2341 ggttcgttga ccggttcgca atcgtcaact tacgacgact ggcagacctc gattcgtatc
     2401 gatcatcgct tcagtggcaa gcacagtctg aacggccggt acctgtatca ggactccggc
     2461 gccgccggca gtattcccgg cgtcgcggcg tcacaaatca cgccgccagg tttctcgtcg
     2521 atcgtgcctt cgcgcacgca gggtgtgaac ctgcaattca cgagtgtgtt gtcgccgaaa
     2581 tggctcaacg aaattcgcgg cgcgttcctg cgcagtgcgt cggccacgct tgcgctggat
     2641 ccgcgttcgg agcagattcc ttcaatggaa gtggttgaac tcggcttggc tggtttcaac
     2701 gctggtccaa cgcgcaccgc gatcggattg ggtgtcaacc tgccgcaaag ccaggttcga
     2761 aacaccttcc agttgcagga caacatctcc tacacaaccg gcaatcacgc gtggaagttt
     2821 ggcgtcgaca ttcgtcgtaa ccagcttcat cagctcttca aaccaaccac gcgcgggttg
     2881 ctcgaatacg cgtcgctcga ctttctcgtg aaggatttcg ccacgagagc aaacatcaac
     2941 aaagacctgc cgggaacggc tcaggtgctc cacaacgact ggcacgattt cttcttcttc
     3001 gcgcaggacg agtggagagt cacgccgcac ttcacactga cgctcggtgt gagatatgaa
     3061 aacccgggcc agccgattca agacctggtc gatttcaacc aaccggtgat cgcggctttc
     3121 ggcggcgatc cgcgcttcgt gttgactccg attccgggtc gcgacaccaa caactggcag
     3181 ccacgcgttg gtttcaactg gaacccgcaa actcgcaatg acggcgtcat cggttggctg
     3241 accggtggtg acaagctcgt cgttcgtggt ggtttcaccc gaactcacga ctacgctttc
     3301 acaaacatcg cgctcaacat ctggagctcg ttcccgtttg tggctgcggt ggcgtcgttc
     3361 ccgaccactt caaccacgcc tcttggcgtt ccgccagtca actgcaacgt gaccccgcgt
     3421 cctgctagct gcgtcactgt gattccgaat gcgttttcgg tcctgaaaaa tccgccgttt
     3481 gatccggcga cagtcaaccg gacgattgtg gacgagaatt tccacatgcc ggtttacgac
//
LOCUS       DASWTX010000875         1768 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_166035, whole genome shotgun sequence.
ACCESSION   DASWTX010000875 DASWTX010000000
VERSION     DASWTX010000875.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1768)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1768)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1768
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166035"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            14..>1768
                     /locus_tag="VGD38_13190"
     CDS             14..>1768
                     /locus_tag="VGD38_13190"
                     /inference="COORDINATES: protein motif:HMM:NF019298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2-macroglobulin family protein"
                     /protein_id="HEY0729024.1"
                     /translation="MKFRLPDNLTTWRATARAVTSDTKVGVSSAKVISRKDVILRLET
                     PRFITQGDTVTLSGIVHNYLKQSKSTQISISVNGAELIGPAQKTVTIDRQGEHRLDWQ
                     ISAPQTGQITLLAKALTNTESDAVELVLDVVPRGLHETKVERWITTDDAAEQQFTLEI
                     PANADLNSRRLRVEVTPSIAGTLFGALDYLTTYPYGCTEQTMSSFLPNIIVSRTLKEF
                     HSTSIRNHNDLRQKVEKGRNRLYAFQHNDGGWGWWKDDQTDSYMTAYVIHGLTLAKQA
                     GYEMDDERIARGREKLRGMLESDVKELQNDQSTRAFMIYALAESGGVDNRYLETFFAE
                     RHNLQPYGRAMLALALSAQKMNNRAQQVAGEIEQTAQVSKATASWGGNRTTELRLNDG
                     DGTEGTAMSLKALSLIKPQSSLLPLAARWLVAERRNGYFWNSTKDTAFAIYGLIDYVK
                     VSRELTPSYDLQVYVNGEAVVAEHVGDASAARTFLLNRKGSAVGATNQIRIVKRGRGT
                     VYFSSAVEYYTNDENVAARGSSELNVSREYYRLKVAQVGYSLKWTTVPLSGEIRSGDL
                     LVVKLRIQGQPARRLMLED"
BASE COUNT          407 a          493 c          536 g          332 t
ORIGIN      
        1 cgggcgcgcg actgtgaagt ttcgtttgcc cgacaacttg accacctggc gagcaacagc
       61 gcgtgccgtg acgagcgaca cgaaagtcgg cgtgagcagt gcgaaagtga tctcgcgcaa
      121 ggacgtgatc ctgcggctcg aaacaccacg tttcatcacg caaggcgaca cggtcacgct
      181 gtccggcatc gtgcacaact atctgaagca atcgaagtcg acgcagatct cgatctcggt
      241 gaacggcgcc gagttgattg ggccagcgca gaagacagtg acgatcgatc gccagggtga
      301 acaccgcctc gactggcaaa tctcagcgcc gcagaccgga cagatcacgc tgctggcaaa
      361 agctttgacc aacactgagt cggatgctgt cgagttggtg cttgatgtgg tgccgcgcgg
      421 tttgcacgag acgaaagtcg agcgctggat cacgacggac gacgctgccg agcagcaatt
      481 cacactcgag atcccggcaa acgccgatct caactcgcgc cgtttgcgcg ttgaagtcac
      541 gccttctatc gccggcactc tgttcggcgc gctcgactac ctgacgactt atccgtacgg
      601 ctgcaccgaa caaacgatgt cgagcttcct gcctaacatc atcgtttcgc gtacgttgaa
      661 ggagtttcac tcgacatcga ttcgcaacca caacgatctc cgccagaagg tcgagaaggg
      721 acgcaatcgt ctctacgcgt ttcagcacaa cgacggcggt tggggctggt ggaaggacga
      781 tcaaacagat tcgtacatga ctgcttacgt gatccacggg ctcacgctcg cgaagcaagc
      841 gggctacgag atggacgacg aacgcatcgc acgtggacgt gagaagttgc gaggcatgct
      901 ggagtcagac gtcaaggaat tgcagaacga ccaaagcacg cgcgcattca tgatttatgc
      961 attggcggaa agcggcggcg tcgacaatcg ttacctcgaa acattcttcg ccgaacgtca
     1021 caaccttcag ccgtacggcc gcgcaatgct ggcgctcgcg ttgtcagctc agaagatgaa
     1081 taaccgcgcg cagcaagtgg ccggtgagat cgagcagacc gcgcaggtca gcaaagcgac
     1141 ggcctcctgg ggaggaaata gaaccacgga attgcggctc aacgatgggg atggaaccga
     1201 gggaaccgcg atgtcgctga aggcgctctc gctgatcaag ccgcagagct cgttactgcc
     1261 gttggccgcg cggtggcttg tggcggaacg aaggaatggt tatttctgga attcgactaa
     1321 agacaccgcg ttcgcgatct acggactgat cgattacgtg aaagtgagcc gtgaactgac
     1381 gccgtcatac gatctgcaag tgtatgtgaa tggtgaagcg gtcgttgcgg aacacgtcgg
     1441 cgatgcgagt gcggcgcgca cgtttctcct gaatcgcaaa ggctcggcgg tcggcgccac
     1501 gaatcagatt cgcatcgtca aacgcggccg cggcacggtc tatttctcaa gtgcggttga
     1561 gtattacacc aacgacgaga acgtcgcggc gcgtggttct tccgagctca acgtcagccg
     1621 cgaatactac cggctcaaag tcgcccaggt cggctacagc ctgaaatgga ccacggttcc
     1681 gttgagtggc gagatccgtt cgggcgattt actcgtcgtg aagctgcgta ttcaaggtca
     1741 accggcgcgc cgtctgatgt tggaagac
//
LOCUS       DASWTX010000876         4754 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_364154, whole genome shotgun sequence.
ACCESSION   DASWTX010000876 DASWTX010000000
VERSION     DASWTX010000876.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4754
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_364154"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..489)
                     /locus_tag="VGD38_13195"
     CDS             complement(<1..489)
                     /locus_tag="VGD38_13195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729025.1"
                     /translation="MRTPRYGLIVLLLIFAAFGTAVSLSQPRPVAARSAQSFTIEQIQ
                     GYPFPSDLTASSSGSRIAWAFNERGARNVWVADAPDFKARRLTNYQTDDGQELTSLSI
                     SSDGKYVVYVRGGDHGSNWESSLGVNPALSATQPRVQIFSVPFAGGEPKLLAEGDEPV
                     ISP"
     gene            488..889
                     /locus_tag="VGD38_13200"
     CDS             488..889
                     /locus_tag="VGD38_13200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729026.1"
                     /translation="MTSLLLSIICVIAAAPFSQAQDARQAFWEQFKTAVTNRDVAAVA
                     QLSQFPVGMSYGIPSVKTKAQLTKRFQQVFNEQTDAAACFGKAKPEVDPANVKAFTVA
                     CPDAAGNEVGIYHFQQTKAGWKFVAMDNLNE"
     gene            complement(783..2243)
                     /locus_tag="VGD38_13205"
     CDS             complement(783..2243)
                     /locus_tag="VGD38_13205"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY0729027.1"
                     /translation="MLIAIGIGLLYILWREVRKIPAKLLTLMATAFVDMVGVLMIFPL
                     LPFYVKNLGEGGVNNLGIHLGIGIITSYIVASFTVAQLLSAPMWGRFSDRVGRRPALL
                     IALSASAIAYLIFGFAESLWVLLLSRVVQGAGGGTVGVIQAYVADSTAPQDRARALGW
                     LSATTNLGVALGPVLGSFAITLGKYDLVPGPATVQMGHAGPGIIAAALCVINIAFAAR
                     YLTESRNPEDHVHIEGEERRTSRQVIWRVISHSGEPSSRLIWIYAIAMGAFQGSFAVL
                     ALFLNARFQVTEQTIGYFFMYVGSISVFTRVLLLGRMVDWLGEAKLSRLGLALLAIGV
                     LGMPLAGNLWMLALAVALIPLGTAFTFPCVTALLSRIIKPRERGLFMGMQQTYGGVAR
                     AIAPLFFGWSFDYLGVSSPYFIASAIIMATILLGLGLDKYAKHEEVATPQRVRAEEGT
                     AATRSDYPSPQTSSQPLSAGSDKYQLHCLRRRDTLQ"
     gene            2334..2843
                     /locus_tag="VGD38_13210"
     CDS             2334..2843
                     /locus_tag="VGD38_13210"
                     /inference="COORDINATES: protein motif:HMM:NF017015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY0729028.1"
                     /translation="MKLTEFFREELDREVERSRKALAEVPDGKYDWKPHERSMIFGYL
                     ADMVATIPMWIQMEIERDELDVAPPDGQGFKTEKKETSEELIKALDETAGAARAALEK
                     TTDEHLRTNWKLLAGGHVVIEEPRYRMIQDTISHWSHHRGQMTVYLRLMGQKVPALFG
                     PSADDQSFK"
     gene            complement(2836..3366)
                     /locus_tag="VGD38_13215"
     CDS             complement(2836..3366)
                     /locus_tag="VGD38_13215"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HEY0729029.1"
                     /translation="MARSATGKAVPQRSQADDISKENTPTSDVVEHLQRQVANAFVLY
                     ANYKHYHWQTFGPLFRDLHLLFDEFAKAVLATVDDFAERVRMIGQDPIFRPDDIQRLA
                     SVQVSGDAGDMREMVAEAAANLIVVIKEMREGARVADEHDDPGTVDLFSRHVQIHEKH
                     EWWLRDILEKGDGLAT"
     gene            complement(3786..4577)
                     /locus_tag="VGD38_13220"
     CDS             complement(3786..4577)
                     /locus_tag="VGD38_13220"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY0729030.1"
                     /translation="MDLGLKDKVALIAAGSRGLGRAVAEELAAEGASLVLCARDTATL
                     AETTASIADQTGAHVLGVPADVTDARQVKQLVASGIERFGRIDILVTNAGGPPAGRFD
                     QLSHEQWEHATRLTLYSAVHLAREVLPGMRTRRWGRILNITSIAVKQPVENLLLSNSL
                     RAAVTGFARTLANEVATEGITVNNILPGYTRTERLEELAQMMAEKLGISADEFRAQWE
                     TEIPMRRLGEPREFAALAAFLVSERASYITGTSIPVDGGWIKSLF"
BASE COUNT         1038 a         1401 c         1387 g          928 t
ORIGIN      
        1 cggcgagatc acaggctcgt cgccctccgc gagcagtttt ggctcgccgc cggcaaacgg
       61 aacactaaag atctgcacgc gcggttgcgt cgcgctcaag gcgggattca cgccgagcga
      121 gctttcccaa ttcgaaccgt gatcgccgcc gcgaacatag accacgtatt tgccgtcgct
      181 cgagatcgaa agactcgtca gctcctgccc gtcgtcggtt tggtagttcg tcaaccgccg
      241 tgctttgaag tcgggtgcgt cagctaccca gacgttgcgc gcgccacgct cgttgaaggc
      301 ccacgcgatc cgcgagccac tcgacgacgc agtcaggtcg ctcggaaacg ggtaaccctg
      361 gatctgttcg atcgtgaacg actgcgcgga ccttgccgca accgggcggg gttgggataa
      421 actgaccgct gttccgaagg ctgcgaaaat cagcaacaga acaatcagac cgtaacgtgg
      481 agtgcgcatg accagtctcc ttttgagcat aatctgcgta atagctgccg cgccgttctc
      541 ccaggcacaa gacgcaagac aggcattctg ggagcagttc aaaacagccg tgacgaatcg
      601 cgacgtggcc gcggtcgcgc agttgtcgca gtttcccgtc ggcatgtctt acggcatacc
      661 aagtgtcaaa acgaaagcac agctaacgaa gcgtttccag caggtcttca acgaacagac
      721 cgatgccgca gcctgcttcg gtaaagcaaa gccagaggtg gatccggcaa acgtgaaagc
      781 gtttactgta gcgtgtcccg acgccgcagg caatgaagtt ggtatttatc acttccagca
      841 gacaaaggct ggctggaagt ttgtggcgat ggataatctg aacgagtagc ggcagttccc
      901 tcttccgcgc gcactctttg tggcgtcgcg acctcttcgt gtttcgcgta cttgtccaac
      961 ccgaggccga gaaggatcgt cgccatgatg atggctgacg cgatgaagta cggcgacgag
     1021 accccgagat agtcaaaaga ccagccgaaa aatagcgggg cgatcgcccg cgctacgccg
     1081 ccgtaagtct gttgcatgcc catgaacaga ccgcgttcgc gtggcttgat gatgcgtgac
     1141 agcagcgcgg tgacacacgg aaacgtgaac gccgttccga gtggaatcag agccaccgcc
     1201 agcgccagca tccacagatt tccggccaaa ggcataccga gaacgccgat cgccaacagc
     1261 gccaggccga gacgtgagag ttttgcttcg cccagccagt cgaccatccg gccgagcaac
     1321 agcacgcgcg tgaagacaga gatcgaaccc acgtacatga agaagtaacc gatcgtttgc
     1381 tcggtcacct ggaagcgcgc gttcagaaac agtgcgagca ccgcgaagct tccctgaaac
     1441 gcgcccatcg cgatcgcgta gatccagatc aaacgtgacg atggttcgcc ggagtgcgag
     1501 atcacgcgcc agatgacctg acgcgacgtg cggcgctctt cgccttcgat gtgaacgtga
     1561 tcttccggat tgcgcgactc ggttaagtag cgcgcggcga aagcgatgtt gattacacag
     1621 agcgcggcgg cgatgatgcc gggtcccgcg tgacccatct gcaccgttgc ggggccgggc
     1681 acgagatcgt atttgccgag cgtgatcgca aacgacccga gcaccggacc gagtgcgacg
     1741 ccgaggttcg tcgtggccga aagccagccg agcgcgcgtg cgcgatcctg cggcgccgtc
     1801 gaatccgcga cgtaggcttg aatcacgccg actgtcccac caccagcgcc ctgcaccacg
     1861 cgtgacagaa gcaacaccca cagtgattct gcaaaaccga aaatgagata cgcgatggcc
     1921 gaggcgctca acgcgatcag cagtgccggc cggcggccga cgcgatccga aaagcgtccc
     1981 cacatcggcg cgctgaggag ttgggccacg gtgaaggatg cgacgatata gctggtgata
     2041 attccgatgc ctaaatgaat gcccaggttg ttgacgccgc cttcgccgag gttcttcacg
     2101 tagaacggca acagcggaaa gatcatcaac acgccaacca tgtcgacgaa ggccgtcgcc
     2161 atcagcgtca gaagtttcgc cggaatcttt cgcacctcgc gccacaggat gtaaagcagg
     2221 ccgatcccga tcgcgatgag catcacgcgc acgagtggcg attgaaatga gtgtgctatg
     2281 ttgtgctgga gcaacatcct ggtgtaaatc ataataacga tttggaggca gtgatgaaac
     2341 tgacggagtt ttttcgtgaa gagctcgatc gagaagttga acgttcgcgc aaggcgttag
     2401 cggaagtgcc ggacggcaag tacgactgga agccacacga gcgctcgatg atctttggtt
     2461 atctcgcgga catggtcgcg acgattccga tgtggattca gatggagatc gaacgcgacg
     2521 aactcgatgt cgcgccgcct gacggacagg gatttaaaac cgagaagaaa gagacgagtg
     2581 aggaattaat aaaagcactc gacgaaacgg caggggctgc tcgtgcggca ctcgaaaaga
     2641 ccacggacga acacctgcgg accaactgga aactgctcgc gggcggacac gttgttattg
     2701 aagaaccgcg ctacaggatg atccaggaca cgatcagtca ctggtcacac catcgcgggc
     2761 agatgacggt ctacttgcgt ctcatgggac agaaagtccc tgcgctgttt gggccatctg
     2821 ccgacgacca gagttttaag tagctaaacc gtcgcccttt tcaagaatat cgcgcagcca
     2881 ccattcgtgt ttttcgtgga tctgcacgtg acgtgaaaag agatcgaccg tccccgggtc
     2941 gtcgtgctcg tctgccacgc gcgcgccctc acgcatctcc ttgatcacca cgatgaggtt
     3001 cgcggccgct tcggcgacca tctcgcgcat gtcgcccgca tcacccgaca cctgcacgct
     3061 cgcaagtcgc tggatgtcgt cgggacgaaa gatcgggtcc tggccaatca tccgcacgcg
     3121 ttcggcgaag tcgtcaaccg tcgccagcac cgccttcgca aactcgtcaa acagcaaatg
     3181 caggtcgcga aatagcggac cgaaagtttg ccagtggtaa tgcttgtaat tcgcgtaaag
     3241 cacaaacgcg tttgccactt gccgctgcaa gtgttcgacc acgtcgctgg tcggtgtgtt
     3301 ttccttcgaa atatcgtcag cctgggaacg ctgaggcaca gctttgcccg tagcacttct
     3361 cgccatattc aattcctcgc tttcaaactt gcattcaaca cgctgctttt ggcgaaagcg
     3421 tgtcgattgc gcggcaaatt aaatacgtga tcgggcgttg atcgctttgg tggagacgtt
     3481 tcgcccagga ggtgttgaac tccggccact cagaagcggc gatgattccc cgttcggtga
     3541 gttcgaaccc ggcggcaaga taacgcgagg cgagttgctg gtctatgaat tcgagcgtga
     3601 gcggaacaag cccgagacgt tggagttcag tctgatcgcg cgcgggatct ggtatacaaa
     3661 gcgcccgtcg cccgtcccga tgtcgatgac tattccgtcg ccggaaaggt ccgataagtt
     3721 tttcaaactc ggacctatcg agttatcagt tagtgctacc acggattgtt ttaatcataa
     3781 cgcctctaaa aaagtgattt aatccagccg ccgtcgaccg gaatcgacgt gcctgtaatg
     3841 taactcgcgc gttccgaaac cagaaacgct gccagcgccg caaactcgcg cggctcgccg
     3901 agacgtcgca tcgggatctc ggtttcccat tgcgcgcgaa actcgtccgc gctgatgccc
     3961 aacttttccg ccatcatctg ggccagctct tccaaacgct ccgtgcgcgt gtaacccggc
     4021 aggatgttgt tgaccgtgat tccttcggtt gcgacttcat tcgcgagcgt gcgcgcaaag
     4081 cccgtgacag cggcgcgcaa actgttcgac aacagcagat tctcaaccgg ttgcttcacg
     4141 gcgatcgacg tgatgttgag gattcttccc caacgacgcg ttctcattcc cggcaagact
     4201 tcacgcgcga gatgcacggc gctgtagagc gtcaaacgcg tcgcgtgttc ccactgttcg
     4261 tgcgacaact gatcgaaccg tcctgcgggt ggaccaccag cgttcgtgac gagaatgtcg
     4321 atgcgtccga agcgctcgat ccccgaagcg acgagctgtt tcacctgtcg tgcatccgtg
     4381 acgtcagcag gcacgccgag cacgtgcgct ccggtttggt ccgcgatcga agcggtggtt
     4441 tccgcgagtg tggcggtgtc gcgcgcgcaa agaaccagcg aagcgccttc agcggcgagc
     4501 tcttcggcga ctgcgcggcc gagaccgcgg ctgcccgcgg cgatgagtgc gactttgtct
     4561 ttgagtccga gatccatggc tatttctgcc tgaggtaatc gtccgttttg tcgagccagt
     4621 cctgccgcgg cgggctgaag acgtcgacgt cgagcgtgtc ctcgagcgcc tcggccttgt
     4681 gccacaccat ggacgggatg tgcagcactt cgcccgcgcg cacgatcact tccttcttct
     4741 catcctcgcc gatc
//
LOCUS       DASWTX010000877         2008 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_34757, whole genome shotgun sequence.
ACCESSION   DASWTX010000877 DASWTX010000000
VERSION     DASWTX010000877.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2008
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34757"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(148..864)
                     /locus_tag="VGD38_13225"
     CDS             complement(148..864)
                     /locus_tag="VGD38_13225"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEY0729031.1"
                     /translation="MRIHRKWQLLWSIVLLSFLVACGRSKSEGTDTGGSEMKTGPIVY
                     VALGDSTGAGVGAVDGGYVLRLHQRILRNRPGSQLSNLCVSGATTADVLQAQLEKGVQ
                     KNPQLVTLGIGINDIGHGVPLERFTQNYDRILSTLKEKTQARIVVTNIPDISSAPVVP
                     LSMRRQYHQQIQTFNERLEEIANRRGVSVFDIYSITTRDLPDHPEYFSRDGFHPSDKG
                     YELWAVEMWPTIARTIGVTD"
     gene            1037..1642
                     /locus_tag="VGD38_13230"
     CDS             1037..1642
                     /locus_tag="VGD38_13230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729032.1"
                     /translation="MKNKTLAISILILIALVVSARWAGSTAQDAPAADSLQATDTTLA
                     LALSLEDMVSQSDVIAIGNVLETRSVWIDRSLVTLATVAVSESLKGAPGETLTVVLPG
                     GVDANRKIPIAMTYPGAPKLTPGENAFLFLHSDSEVGGYNIAGFAQGKFSIVNDEDGE
                     PMVSRDLTQVSLQGNNGVRRGQSNMTPLKSMKDQVKGYLNR"
     gene            1727..>2008
                     /locus_tag="VGD38_13235"
     CDS             1727..>2008
                     /locus_tag="VGD38_13235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729033.1"
                     /translation="MGVVNVRAGGALETIDLTGAGPSPIAGHLLARVIGIKWDARSIP
                     VQYRINNTLDPIPNPLGPAFLSVAAATTELQASLNKWNDIPTSFINMQII"
BASE COUNT          457 a          594 c          498 g          459 t
ORIGIN      
        1 catcccaacc acaacgagcg ataacagcat caccgaaagc acaagcgaag tcttcctcat
       61 tcagcttttc ctcctaaagt taaatgctta ctccggcagt ccaatcttgc gcaccaggtc
      121 gtaacggctc tcgaggcaac gtctcgtcta gtcggtgacg ccgatcgtgc gcgcaatcgt
      181 aggccacatt tcgacggccc acaactcgta acccttgtct gacggatgaa aaccgtcgcg
      241 cgagaagtat tcgggatgat ccggcagatc gcgcgtcgtg atcgagtaga tgtcgaagac
      301 gctgacgccg cgacgattcg cgatctcttc gagccgctca ttgaacgttt gaatctgctg
      361 atgatactgc cttcgcatcg acaacggaac caccggggca ctcgagatgt cgggaatatt
      421 cgtcaccacg attcgcgcct gcgtcttctc tttcaacgtg ctcaaaatgc gatcgtagtt
      481 ctgcgtaaac ctctcgagcg gcacgccgtg tccgatgtcg ttgatgccga tcccgagcgt
      541 gacgagctgc gggttcttct gaactccttt ttccaactgt gcctggagaa cgtcggccgt
      601 cgtcgcgccg ctgacacaca aatttgagag ttgcgatccg ggtcggttcc ggagaatgcg
      661 ttggtgtagg cgtagcacgt aaccgccatc gactgctccc actcccgctc cggttgagtc
      721 tcccagcgca acataaacaa tcggccccgt tttcatttca ctgccacccg tgtccgtccc
      781 ctctgatttg ctccggccgc aggcaaccag aaaactcaat aaaacgatag accatagtag
      841 ttgccatttc cggtgaattc tcattgtttt tccttgactt taacccgcga ccagaataat
      901 gtgccagccc tctgcagctc acttcagttc agtactttat cgtgcggcag tcctgatcta
      961 tctcctccga acgctgcctc gacggtcgga gcatactcag ttcagtcaat tacaaggatc
     1021 gacgaaagga cgaaatatga aaaacaagac cttggcaatc tccatcctta ttttgattgc
     1081 cctcgttgtc tcagcgcgtt gggccggctc cacagcccaa gacgcgcccg cggcagactc
     1141 cctgcaggcg acagacacca ctctggctct tgccctctcg ctcgaagaca tggtgagcca
     1201 gtcagacgtg atcgcgatcg ggaacgttct cgaaacgcga agcgtttgga tcgatcgcag
     1261 cttggtaacg ctcgctaccg tcgcggtaag cgaaagtctt aaaggagcac ccggcgaaac
     1321 cctcactgta gtcctccccg gcggcgttga tgccaatcgc aaaataccga ttgcaatgac
     1381 ctatcccggt gcaccgaaac tgacacccgg cgaaaatgcg tttctctttc tacactccga
     1441 cagcgaggta ggcggttaca acatcgctgg ttttgctcaa ggaaaattct ccatcgttaa
     1501 cgacgaagat ggcgaaccga tggtctcgcg cgaccttaca caagtgtcgc tgcaaggcaa
     1561 caacggcgtc cgtcgcggcc aatccaacat gactccgctt aagagtatga aggatcaggt
     1621 caaaggctac ttgaaccggt agcaccacat caggagaaca atttccttag gaggaattat
     1681 gagaagaaag ctcacatcga tactacttac tacatgcatg cttctgatgg gcgtcgttaa
     1741 tgtgcgcgcg ggtggtgcac tggaaacgat cgatctcacg ggcgctggtc catcgccgat
     1801 tgcgggtcat ttgctggctc gtgtgattgg cattaagtgg gacgcacggt cgatccctgt
     1861 tcagtatcgc atcaacaaca ctctcgatcc gattcctaat ccgcttggcc cggcgttctt
     1921 gtccgttgcc gccgcgacca ctgagttgca ggcctcgttg aacaagtgga acgacatccc
     1981 gacctcgttc atcaatatgc agatcatc
//
LOCUS       DASWTX010000878         1501 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_205563, whole genome shotgun sequence.
ACCESSION   DASWTX010000878 DASWTX010000000
VERSION     DASWTX010000878.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205563"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..211)
                     /locus_tag="VGD38_13240"
     CDS             complement(<1..211)
                     /locus_tag="VGD38_13240"
                     /inference="COORDINATES: protein motif:HMM:NF013691.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HEY0729034.1"
                     /translation="MALEEKLKEIPSSPGVYLHKDAAGKVIYVGKAKNLRSRVRSYFR
                     ARPFDRKTDALVGQITDFEFIVTDNE"
     gene            243..1184
                     /locus_tag="VGD38_13245"
     CDS             243..1184
                     /locus_tag="VGD38_13245"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase family protein"
                     /protein_id="HEY0729035.1"
                     /translation="MNFPIKLPGDKPFDAVGFGLNAVDHLIVVPEYPAYDTKVRLIEH
                     KQSAGGQTATTMVALRRLGLKTAYAGRFGSDAEGQFGLKSLAGEGVNCDFAEVIEAAK
                     NQIAFITIDARSGERTIVWDRDERLAYKAYEAPAEFGPLGRVLHLDAHDPPACVRVAT
                     AAKAANTVVSADIDNVYEGLPELLPLIDILIGSKEFPCRVTGISDERAALVELHNRFG
                     CAIVGMTIGAGGAVAYCDGKFIESPGFPAPGGCRDTTGAGDAFHGGFLYGLLTGENLE
                     TSLKFGNAVAAIKCSALGARTALPSAPELTKFLNNSC"
     gene            1197..>1501
                     /locus_tag="VGD38_13250"
     CDS             1197..>1501
                     /locus_tag="VGD38_13250"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0729036.1"
                     /translation="MRLILIVVSALLVSFMPLQSRVTPADIVFKNGNVYTANDKAPQA
                     QAIAVKADRIVFVGTNAAAQRFVGTNTRVVDLQGKTVLPGFTDSHQHLSGVGQREMT"
BASE COUNT          321 a          413 c          438 g          329 t
ORIGIN      
        1 cttcgttgtc ggttacgatg aactcaaagt cggtgatctg gcccacgagc gcgtcggttt
       61 tccggtcgaa cggccgcgcg cgaaaatagg aacgaacgcg gctgcgaagg ttcttcgctt
      121 ttccgacgta gatcaccttt cccgcagcgt ctttgtgcaa gtagacgccc ggtgacgagg
      181 gaatttcttt tagtttctct tctaaagcca ctgttgttag gatgccattt taacttaccg
      241 agatgaactt tccgattaag ctgccgggag ataaaccatt cgacgcggtt gggtttgggt
      301 tgaacgccgt cgatcacctg attgtcgtgc ccgaatatcc ggcgtacgac acaaaggtgc
      361 ggctgatcga acacaaacaa tcggccgggg ggcaaacggc aacgacaatg gttgcccttc
      421 gcaggttggg tttgaagacg gcctacgccg gccgtttcgg gtccgacgcg gaaggacagt
      481 tcgggttgaa atcactggcc ggcgaaggcg tcaactgcga cttcgcggaa gtgatcgaag
      541 cagcgaaaaa ccagattgca tttataacga tcgacgcgcg cagcggtgag cgcacgatcg
      601 tttgggatcg tgatgagcgc ctggcttaca aagcctacga agcgccggct gagtttggcc
      661 cgctcgggcg agtgctgcat ctcgacgcgc acgatccgcc ggcgtgtgtg cgcgttgcca
      721 ccgctgcgaa agcggcgaat acagtcgtct ccgcagacat cgataacgtt tatgaaggac
      781 ttcccgaact actcccgctc atcgacattc tgatcggctc gaaagagttt ccctgtcgcg
      841 ttaccggcat cagtgacgaa cgcgcggccc tcgtggaact acataaccgt ttcggttgcg
      901 cgatcgtcgg gatgacgatt ggcgccgggg gcgcggttgc ttattgtgac ggcaagttca
      961 tcgaatcacc cggctttccc gcacccggcg gttgtcgtga cacgaccgga gcgggcgacg
     1021 cgtttcacgg cgggtttctt tacggtttgc tcactggtga gaatcttgag acgagcttaa
     1081 aattcgggaa cgccgtagct gcgataaagt gcagtgcgct gggtgcaagg acggccctgc
     1141 cgagcgcgcc agaactcaca aagtttctta ataactcgtg ttaatctgtg gcaactatga
     1201 gactcatttt aatcgtcgtt agtgctctgc tcgtaagctt catgccgctc cagtcgcgcg
     1261 ttacaccggc tgacattgtc ttcaaaaacg gcaacgttta cacggcaaac gacaaagcgc
     1321 cacaagcgca ggcgatcgcg gtcaaagccg atcgcatcgt ctttgtcggc acaaacgccg
     1381 ccgcgcagcg attcgtcggg acgaacacac gcgtcgtcga tctgcaaggc aagacggtgt
     1441 tgccgggctt cactgattcc catcaacacc tctcgggcgt cggccaacga gaaatgacat
     1501 t
//
LOCUS       DASWTX010000879         1530 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_422776, whole genome shotgun sequence.
ACCESSION   DASWTX010000879 DASWTX010000000
VERSION     DASWTX010000879.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422776"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..536)
                     /locus_tag="VGD38_13255"
     CDS             complement(<1..536)
                     /locus_tag="VGD38_13255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HEY0729037.1"
                     /translation="MGKAIGIDLGTTNCCVSVLEGGAVQIVPNKEGGRTTPTVVGFTE
                     RGERLVGQIAKRQAVTNAANTVYAVKRLIGRKFNSTEVQRMRETSAFEIVDSPNGDAR
                     VKVQGRNYSPPELSGIVLQRLKAAAEDFLGEAVTDAIITVPAYFDDTQRQATKDAGKL
                     AGLKVERIINEPTAAALA"
     gene            complement(547..1257)
                     /gene="grpE"
                     /locus_tag="VGD38_13260"
     CDS             complement(547..1257)
                     /gene="grpE"
                     /locus_tag="VGD38_13260"
                     /inference="COORDINATES: protein motif:HMM:NF010738.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEY0729038.1"
                     /translation="MTSDRKDKPYRIPIRFTDAEDEGGSVDDESAMERVDPDIDNDEV
                     FSIDEDDASLDAVSPTEPSETLGDVGGPDRAELIATRSELKRIEAENAELKSQLARRQ
                     ADFENYRKRVERERNETYNRVVADVAAKLLPVSDNLKRALDAESSVEAAESDEFRHFL
                     SGVDLIWKQLNGVLDALGVKPIPSVGEPFDPHVHEAVVTEATDEYEPDTVMQEIVAGY
                     RLGDKLIRPALVKVATRK"
     gene            complement(1284..>1530)
                     /locus_tag="VGD38_13265"
     CDS             complement(1284..>1530)
                     /locus_tag="VGD38_13265"
                     /inference="COORDINATES: protein motif:HMM:NF013768.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729039.1"
                     /translation="NECVHEHPYSGDVHVVIGREHPTDSMRNCTLITAPYQVGQNGGV
                     GTLGVVGPMRIEYARIMAMVNYMARLIEHRLGEQAAP"
BASE COUNT          278 a          461 c          425 g          366 t
ORIGIN      
        1 tacgcgagcg ccgcggccgt cggctcgttg atgatgcgtt cgactttcag accggcgagc
       61 ttgcccgcgt cttttgtcgc ctgccgttgc gtgtcgtcga agtaagcggg aacggtgatg
      121 atcgcgtcag tcaccgcctc gccgagaaag tcttccgcgg ctgctttgag acgttgcaaa
      181 acgatccccg acagctccgg tggactgtaa ttccgtccct gcactttcac tcgcgcgtcg
      241 ccgtttggcg aatcgacgat ctcaaacgcc gaagtctcgc gcattcgttg cacttcggtc
      301 gaattgaact tgcggccgat gagacgcttg acggcgtaga ccgtgttcgc ggcgttggtc
      361 accgcctggc gtttcgcgat ctggccaacc agacgttcgc ctcgttcagt gaaaccgaca
      421 actgtgggcg ttgtgcggcc accttctttg ttgggcacga tctgcactgc gccgccttcg
      481 agcaccgaga cgcagcagtt cgtggtgcct aaatcgatgc caatagcttt tcccatctat
      541 ccaggtttac tttcgtgtcg caactttcac cagggcggga cgaatcaact tatcgccaag
      601 gcggtagccc gcaacgatct cctgcataac agtgtcgggc tcgtactcgt ccgtagcttc
      661 cgtgaccact gcttcatgaa cgtgaggatc aaaaggctct ccgactgagg ggatcggctt
      721 gactcccagc gcgtcgagca cgccgttgag ttgtttccaa atcagatcga cgccactcaa
      781 aaagtgacga aactcgtccg actccgctgc ttcaaccgaa gactcggcgt cgagcgcgcg
      841 tttgagattg tcggaaaccg gcagcaactt cgcggcgacg tcggccacca cgcgattgta
      901 agtttcgttg cgttcgcgct caacgcgttt gcggtagttt tcaaaatccg cctggcggcg
      961 cgcgagctgg cttttcaact cggcgttttc cgcttcaatc cgcttgagtt ccgatcgcgt
     1021 cgcgatcaac tcggccctgt cgggtccgcc aacgtcacct aatgtctccg acggctcggt
     1081 cggcgagacc gcgtcgagtg acgcgtcgtc ctcgtcgatt gaaaaaacct cgtcgttatc
     1141 gatgtcggga tctactctct ccattgctga ctcgtcatcc acggaaccgc cttcgtcttc
     1201 agcgtccgtg aatctgatcg gaatgcggta aggcttgtct ttcctgtctg atgtcattag
     1261 taggcaggat tgaatcgtta cgattaaggg gcggcctgtt ctccgaggcg atgttcaatc
     1321 aaccgcgcca tgtagtttac catagccatt atccgcgcat attcaattct catgggccca
     1381 acaacgccca atgtgccgac gccgccgttc tgtccgacct ggtaaggcgc cgtgatcagc
     1441 gtgcagttgc gcatcgagtc ggtcgggtgt tcgcggccga tgaccacgtg aacgtcgccc
     1501 gagtatggat gctcgtgaac acactcgttg
//
LOCUS       DASWTX010000880         1973 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_140677, whole genome shotgun sequence.
ACCESSION   DASWTX010000880 DASWTX010000000
VERSION     DASWTX010000880.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1973)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1973)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1973
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140677"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..902)
                     /gene="metK"
                     /locus_tag="VGD38_13270"
     CDS             complement(<1..902)
                     /gene="metK"
                     /locus_tag="VGD38_13270"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017370549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEY0729040.1"
                     /translation="MTTESGYLFTSESVTEGHPDKISDQISDAVLDAALSVDPTARVA
                     CETLVTTGLVVVAGEITTDAVIDYSRVARETVREIGYTRAKYGFDCDTCAVLSALDRQ
                     SPDIAMGVDTGGAGDQGLMFGFACNETPELMPLPIQLAHLLSRRLSEVRKSGELPYLR
                     PDGKSQVTVEYRDGRPFRLEAVVISSQHADEVTNEQLRAEIEEKVIKHTVSPELLDKD
                     TKYHINPTGRFVTGGPQGDAGLTGRKIIVDTYGGYAPHGGGAFSGKDPTKVDRSAAYM
                     ARYVAKNIVAAGLADRCMVQLAYA"
     gene            1068..>1973
                     /locus_tag="VGD38_13275"
     CDS             1068..>1973
                     /locus_tag="VGD38_13275"
                     /inference="COORDINATES: protein motif:HMM:NF014841.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY0729041.1"
                     /translation="MNNPSASLMEVTRALSNAAKAADFHFGEDTAIVAVQHMLWQTVD
                     LCEAVVTLGARRENIFALGKVYSNSPVVIEVLRDLGITVVQSSMPEPGEFDRYFQADV
                     NHLWQLVKHHLSRRRNIKRILVLDDGGACTTSIPNELLRRYTVAGVEQTSFGMFRFEE
                     HPPPFAVMSWARAAVKLQIGGSLFSQCLLARLQTHVLGGATLTGETTGIIGLGSIGNA
                     MAHLVERQGNHVIFYDPDPQLQVPDYLQGRITRCESLEELMLRCDYVFGCSGRNPFKD
                     QWPLKYRPGIKLFSASGGDQEFGPII"
BASE COUNT          450 a          575 c          550 g          398 t
ORIGIN      
        1 atcgcgtacg ccagctgcac catgcagcga tcagccagcc ccgcagccac aatattcttg
       61 gcgacgtagc gtgccatgta agcagcagag cgatcgacct tcgtcggatc tttaccggag
      121 aaggcgccgc cgccgtgagg cgcatagcca ccataagtat cgacaatgat cttgcggccc
      181 gtcaggccgg cgtcaccttg tggtccacca gtgacaaacc tgccggtcgg attgatgtga
      241 tactttgtgt ctttgtcgag cagctcaggc gagacagtat gcttgatgac tttctcttcg
      301 atctcagcgc gaagctgttc gttagtgact tcgtcggcgt gctgcgaaga gatgaccacg
      361 gcctcgagcc ggaacggccg gccgtcgcga tactcgacag tgacctggga ttttccatca
      421 ggccgcaggt agggaagctc gcccgacttg cgcacttccg acaagcggcg cgaaagcaag
      481 tgggccaact ggatcggcag cggcatgagc tcgggtgttt cgttacaagc gaaaccaaac
      541 atcaatccct gatcgccggc gccgccagtg tcgacgccca tcgcgatgtc cggcgattgc
      601 cgatcgagag cagacaacac ggcgcatgtg tcgcagtcga aaccatactt cgcgcgggtg
      661 taaccgattt cgcgaactgt ttcgcgcgcg acgcgcgagt agtcgatgac ggcgtcagta
      721 gtgatctcac cggctacgac gacgaggccg gtcgtgacca acgtttcaca agcaacgcgt
      781 gctgttggat cgacgcttaa agcagcatca aggaccgcgt cagagatctg atcggagatc
      841 ttgtccgggt gtccttcagt aacggattcg gaggtgaaca agtaaccgga ttcggtagtc
      901 aaaacaactc ctttgcttac acagacgtga atttagtgta gaaaaagacc acgcactgta
      961 acagtccggc ttcacgagtg tcaaggtaac acgaccccgg acttggccgt aaaaccttgg
     1021 aaattactca atagttaaca gttccccgac tcacgaaatt cagcatcatg aacaacccat
     1081 cagcctcctt gatggaggta acgcgtgcgc tctcaaacgc cgcgaaggcc gcggattttc
     1141 acttcggaga agacaccgca atcgtcgccg tgcaacacat gctctggcag acggtcgacc
     1201 tctgcgaagc tgtcgtaaca ctcggagcca ggcgcgaaaa catcttcgct ctcggcaagg
     1261 tctattcaaa tagtcccgtc gtgatcgaag tcctgcgcga tctcggaatc actgtcgtac
     1321 aaagttcaat gcccgaaccg ggagaattcg accggtactt tcaagcggac gtgaatcacc
     1381 tgtggcaact cgtaaagcat catctctcgc gccgccgcaa tatcaaacgc attctcgtgc
     1441 tggacgacgg cggcgcgtgc accacgagca ttccgaacga gttactgcgg cggtatacgg
     1501 tcgccggtgt cgagcagacg tccttcggca tgttcaggtt tgaagaacat ccgcctccgt
     1561 tcgcagtcat gtcgtgggcg agagccgcgg tgaaactaca gatcggcgga tcgctgtttt
     1621 cacagtgtct gctggcgcgt ttacaaaccc acgtgctggg cggcgccaca ctcaccggcg
     1681 agacgaccgg tatcatcggc ctcggcagca tcggcaacgc aatggcccat ctcgtcgagc
     1741 ggcaaggcaa ccacgtcatc ttttacgatc ccgatccgca gttgcaggtt cccgattatc
     1801 tccagggacg aatcacgcgc tgcgaatcac tcgaagaact gatgttgcgc tgcgactacg
     1861 tgttcggctg ttccggacgg aacccattca aagatcagtg gccgctgaaa taccggccgg
     1921 gaataaaact cttcagcgcg tcgggcggcg atcaggagtt tggaccaatc atc
//
LOCUS       DASWTX010000881         3133 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_166127, whole genome shotgun sequence.
ACCESSION   DASWTX010000881 DASWTX010000000
VERSION     DASWTX010000881.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3133
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166127"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..310)
                     /locus_tag="VGD38_13280"
     CDS             complement(<1..310)
                     /locus_tag="VGD38_13280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729042.1"
                     /translation="MKFEDSSQNLRARLRFVQILVVLMLGVLSVRLYVLQVVRGDRYS
                     EIAQNQRRRRLPIPAPRGVIFDRNKRPIVDSRPIYNVILSREDVKGKDLNALVEPLSS
                     G"
     gene            complement(372..914)
                     /gene="mreD"
                     /locus_tag="VGD38_13285"
     CDS             complement(372..914)
                     /gene="mreD"
                     /locus_tag="VGD38_13285"
                     /inference="COORDINATES: protein motif:HMM:TIGR03426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HEY0729043.1"
                     /translation="MSQLKIAAVLLISIVLQLSLREVWRPLAYIDFPLIVVVYIALQR
                     EAWQALVVGTLAGLIVDARSGGLIGAGGFSKTLTAYIIFFAATKVNLENPLLRIPVLA
                     AATLLDSAIYVFWHRVLGYAPGVPFVQTLSYKLIATTVVGTLVLYVLDSVKSGESAQR
                     RQFATRRRVARRSTGPLRRR"
     gene            complement(932..1834)
                     /gene="mreC"
                     /locus_tag="VGD38_13290"
     CDS             complement(932..1834)
                     /gene="mreC"
                     /locus_tag="VGD38_13290"
                     /inference="COORDINATES: protein motif:HMM:TIGR00219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEY0729044.1"
                     /translation="MASVRTQREIRQRAPLWLVTLLITNLVVMAVDARDANGEHKILR
                     IWTQTLSSPLQSTSSKVSGATSGFFQQIWNFRSTAAENEQLKERLAKAESELNAARQA
                     EAENERLKALLGLDEQLNIKSVPARVIARDPSIWFNTVTINRGSSSGVETNMPVVTAG
                     GIVGRVITVSPWASQVMLITDEKAGAGAVVGQLGQSGALGSVRGRADLGVSVIEMRYV
                     SGLEQVEVGDTVMTTGQDGIYPPGLNVGKVVDVKKGTATQAHQILIQPGAQLDHLEDV
                     AVLLYHPPQRPTPQPTLQNAERTR"
     gene            complement(1838..2884)
                     /locus_tag="VGD38_13295"
     CDS             complement(1838..2884)
                     /locus_tag="VGD38_13295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002621977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEY0729045.1"
                     /translation="MAFKSIFSLFSSDLAIDLGTANTLVYAKGRGIVVSEPSIVAINK
                     VTNQVEAVGRDAKDMLGRTPGNIVAIRPMKDGVIANFEVTEKMLQHFIRKAHNGKTWV
                     SPRVVIGIPSEITQVERRAVEDSAYRAKASEVYLVEEAMAAAIGAGLPITEPHGNMVV
                     DIGGGTTDIAVISLSGIVYSRAVRVAGNEMDEAIIQYIKRKYNLLIGERTAEAIKIEL
                     GSAYPIDEPLSYEVRGRNLIEGIPKTITITDEEVREALADSISTIINAVRVALERTPP
                     ELSADIVERGIVLTGGGALLKNLDKRLSIETGLPVSLADDPLASVVLGTGKMLSDFDL
                     LKRVKWENTMTSGM"
BASE COUNT          651 a          898 c          881 g          703 t
ORIGIN      
        1 tgccgctgga gagcggctcg acgagcgcgt tcaggtcttt gcctttcacg tcttcgcgcg
       61 aaaggatcac gttgtagatg ggacgcgaat cgacgatggg tcttttgtta cggtcgaaga
      121 tcacgccgcg cggggccgga atcggcaagc ggcgccggcg ctggttctgc gcgatttccg
      181 agtagcgatc gccgcggacc acctgcaaga cgtagagccg tacgctgagc acacccagca
      241 tcaacacgac aaggatctgc acaaaacgca gccgggcgcg aagattttgc gatgagtctt
      301 cgaatttcat gacctgagcc tcacgaagct tctacttagt cgtttctttt tgccgccgcg
      361 ttgcaaagaa atcatcttct tcgtaacggg ccggtcgaac gccgtgcgac gcggcgccgg
      421 gtggcgaatt gccggcgctg tgccgactcg ccggacttca ctgaatcgag cacgtaaaga
      481 accagagtac cgaccactgt cgtggcgatc agtttgtaag acagcgtttg cacaaacgga
      541 acgcctggag cataaccaag cacgcggtgc cagaagacgt agatcgcgga gtcgagcagg
      601 gttgcggccg ccagcaccgg aattcttaac aacgggtttt caaggtttac tttcgtcgcc
      661 gcgaagaaaa tgatgtaggc cgtgagcgtc ttggaaaatc cacccgcgcc gatcaggccg
      721 ccgctgcggg cgtccacgat caatccggcg agtgttccca ccaccagcgc ctgccatgct
      781 tcgcgttgca gcgcgatgta aacaactacg atcagcggaa agtcgatata tgcgagcggc
      841 ctccaaacct cgcggagtga aagctgcagc actatcgaga taagcaaaac tgcggcgatc
      901 ttaagctgcg acatttccgg aaactaaaat ctcagcgcgt tctttccgca ttctgcaaag
      961 tcggttgggg ggttggtcgt tgtggagggt ggtacaaaag caccgccacg tcctctaaat
     1021 ggtccaactg agcgccgggt tggatcaaaa tctggtgtgc ctgggtggct gttcctttct
     1081 tcacgtcgac aactttgccg acgttcaaac cgggcggata aattccgtcc tggcctgtgg
     1141 tcattacagt gtcgccgacc tcgacctgtt cgagaccgga aacgtaacgc atctcgatca
     1201 cgctgacgcc gagatccgcg cgcccgcgta ccgagccgag tgctcccgat tggcccaact
     1261 gtccgaccac cgcgcccgct ccggctttct cgtcggtgat cagcatcact tgcgaggccc
     1321 acgggctgac agtgatcacg cgaccgacga tccctccggc agtcacgacc ggcatgttcg
     1381 tttcgacgcc ggacgagctg ccgcgattga tcgtcacggt gttgaaccag atcgaaggat
     1441 cgcgagcgat cacgcgagcc ggaacactct tgatgttcaa ctgttcgtca aggccgagta
     1501 gtgccttgag acgttcgttt tctgcttcag cctggcgtgc ggcgttcagt tctgactcgg
     1561 ccttcgccag gcgttctttc agttgctcgt tctccgccgc ggtgctgcgg aagttccaaa
     1621 tctgttgaaa gaaaccggaa gtggcgccgc tcactttcga cgacgtgctt tgcaacggcg
     1681 aagacaaggt ctgcgtccag atgcgcagga tcttgtgctc gccgttcgcg tcgcgcgcgt
     1741 caactgccat aacgactaaa ttggtgatca gtaacgtcac gagccagagt ggcgcccgct
     1801 gacggatttc tctttgggta cgaaccgaag ccactgctta catcccgctg gtcattgtgt
     1861 tttcccactt cacgcgtttc aggagatcga agtcagacaa catctttccg gtccccaaaa
     1921 cgaccgaagc aagcggatcg tcggccagtg agaccggcag acccgtttca attgaaaggc
     1981 gcttgtccag atttttcagt aaagcgccgc cccccgttaa tacaataccg cgttcgacga
     2041 tatccgcgga aagctccggc ggcgttcttt cgagtgccac acggacggcg ttgatgatcg
     2101 tcgagatcga atccgcgagt gcctcgcgca cttcttcgtc ggtgatggtg atcgtcttgg
     2161 gaattccttc gatgaggttg cggccgcgaa cttcgtacga cagcggctcg tcgattggat
     2221 aggccgagcc gagttcgatc ttgatcgctt ccgcggtgcg ttcgccgatt aacaagttgt
     2281 acttccgctt gatgtactga atgatcgcct cgtccatctc attgccggcg acacgcacgg
     2341 cgcgcgagta aacgatacca ctcaaactga tcaccgcgat atcggtcgtg ccgccgccga
     2401 tgtctacgac catgttgccg tgcggttcgg tgatgggcag tccggcgccg atcgccgcgg
     2461 ccatcgcttc ttcgaccaga taaacctcag atgcttttgc acggtaagct gagtcttcga
     2521 ctgcgcggcg ttcgacctgt gtgatttcag aagggatacc gatgacgacg cgcgggctga
     2581 cccatgtttt gccgttatgg gccttgcgga tgaagtgctg gagcatcttc tcggtgactt
     2641 cgaaatttgc gataacgccg tccttcatgg gccggatggc aacgatattt ccgggcgtac
     2701 ggcccaacat gtccttggcg tcacggccca cggcttcgac ctgattagtt actttgttaa
     2761 ttgcgacgat agaaggctca gagacgacga tgccgcgacc cttcgcgtag accaatgtat
     2821 ttgccgtccc caagtcgatt gccagatcac tggaaaacag actgaaaata gatttgaaag
     2881 ccatctagac ttattcactt cccgtggatg tagtatggaa cttcgggtgg gatcggcagc
     2941 actatcaagt agggagagaa aacccttcgc tccttacctc tttagacgcg accaaacacg
     3001 tccgacctcc taagatacac cgttaacgca cgaaccgtaa actgttttgt agtttatact
     3061 ttgttagacc tagttctgga gctgcccggg gtttcctact tcgagctcga ggctctcgat
     3121 gagctggtcg acc
//
LOCUS       DASWTX010000882         5807 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_296996, whole genome shotgun sequence.
ACCESSION   DASWTX010000882 DASWTX010000000
VERSION     DASWTX010000882.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5807)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5807
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296996"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..930
                     /locus_tag="VGD38_13300"
     CDS             <1..930
                     /locus_tag="VGD38_13300"
                     /EC_number="1.1.5.-"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016901 - oxidoreductase activity, acting
                     on the CH-OH group of donors, quinone or similar compound
                     as acceptor [Evidence IEA];
                     GO_function: GO:0070968 - pyrroloquinoline quinone binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEY0729046.1"
                     /translation="GRVRVIETGTLRPQPLFVVPDVESTGESGLMSLALHPQFSSNRF
                     IYIAYAYAVDKVRVARYRETPEGLVDRTAIIENIPAAQYHAGCRIRFGPDGKLYITTG
                     DATDRQLAQRLDSLAGKTLRLNDDGSVPQDNPFVGQQNARPEIWSYGHRNAQGMDFQP
                     GTNLMFQTEHGPSGFDGPGGGDEVNIVERGKNYGWPLVHHQETRAGTEPPLLEYTPAC
                     APASGAFYRGDALARFKGNFFFGCLRGERLIRVELDGRRVIRQEDLIRDYGRIREVEE
                     GPDGYLYFSTSNRDGRGKPASDDDRIMRLVPAR"
     gene            complement(935..1585)
                     /locus_tag="VGD38_13305"
     CDS             complement(935..1585)
                     /locus_tag="VGD38_13305"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY0729047.1"
                     /translation="MEYALTATKTKARAGSYYDRIARYYDLTFKLNGYGRALDQYFET
                     HPLPVSRGAHILDAGCGTGLLTLALLRAIRFPVALTALDLSSTSVAAARKALYYSPGR
                     KRDVTFAQGNLLCLPFADESVDLVVTSGALEYVKLEDGLTELARVIAPGGHLLHLPIH
                     PSAVGILLEILFRFKSHPPKEVKEQTEKHFRIIHQYRFPRKEAIGWSKTAILAQKI"
     gene            1811..2584
                     /locus_tag="VGD38_13310"
     CDS             1811..2584
                     /locus_tag="VGD38_13310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729048.1"
                     /translation="MRRLLWTLAGATFLLTALLGTGTAVLLRSGRAAAQGSQSERVIT
                     GKRVRYPNFELDIVVDGRPLTEYHESGRVYVNALQGAEYELRLRNPSADRVAVALSVD
                     GLNTIDAEQTSAWNASKWVIEPYQTITISGWQMSSERARRFYFTTERDSYAAKLGRKA
                     NVGVITAVFFRERRRAIPITRGQVDTSGPVPAAEPELRAEASRDRAAATGNSKAATGI
                     GRSVRHDVRSIDMELDSNPAEELTVRYKFSRDGRFCPEP"
     gene            complement(2592..3998)
                     /locus_tag="VGD38_13315"
     CDS             complement(2592..3998)
                     /locus_tag="VGD38_13315"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEY0729049.1"
                     /translation="MKKIAAVFSLSLLVTVQSSSQSARDTTLSNVRQSDAAGRSADGS
                     VPKLAPAEHMRRASVYLGNRAFPEARAHWQALLDNYPQDPRAAEALLGIGRSYFLSKV
                     YQDGYVVFNELVQKYPGTKEAREALNYSAASLLRMGKFSESAARYEEYINRHPNGERI
                     DTAHLNMIDTLREANRPADAMVWVTRTRQRFAGSATETNAMFGALRLHVSEGEWSKAV
                     AMADQLSQRTFAKAVQTSRSEVAYLRAFSLEQAGRKNEAITAYLAVPDSIDSYYGWLA
                     TQRLAALAGKERAELVSEREARVNSAIANIADTYPAPYRQAILSASKARKLDPRFILA
                     LMKQESVFKPFAKSPAGARGLLQLTLDTAQKYAPAAGLNSLRENQLYQPETSIMLGAE
                     YLEHLTQMFPDMLEPVAASYNGGEDNVARWLERAGHKDRGVFTSEIGFDETKGYVQKV
                     MSNYRVYRQLYTADLIRR"
     gene            complement(4011..4445)
                     /locus_tag="VGD38_13320"
     CDS             complement(4011..4445)
                     /locus_tag="VGD38_13320"
                     /inference="COORDINATES: protein motif:HMM:NF014608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEY0729050.1"
                     /translation="MTTKAVVKFVEDDLFVGITPAGRAIVLDTNSQRSSGPSPVELLL
                     VALGSCTATDVASILKKKRQHVTSYTVEISGERRDEYPRSYTSMKVHHILTGRSLSSN
                     AVAHAIELSETKYCSVADTLRPKVEIQTTFEIIEEPRESYGE"
     gene            4695..5069
                     /locus_tag="VGD38_13325"
     CDS             4695..5069
                     /locus_tag="VGD38_13325"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0729051.1"
                     /translation="MADILVVDDDDVIRDTLCELLAVDHNCEQANTAEDALRKLEARS
                     FDVVLTDITMPGLSGSELLTRVLERYPGTPVIMVSGLTDQEQAQSLISLGAFDYLLKP
                     FRLEVVEESVKRAVEHRHRTSG"
     gene            complement(5071..>5807)
                     /locus_tag="VGD38_13330"
     CDS             complement(5071..>5807)
                     /locus_tag="VGD38_13330"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0729052.1"
                     /translation="TLSSRTVGEQVVIKVADTGVGMYPEVRSRIFDPFFTTKGTAGLG
                     LGLAVSFGIIRRHSGNIEVESQYGKGTEFRISLPLAKIAETPLVKRELIVEAPEPTPL
                     VAAADTLPPARLLVVDDEDFVRELLSEILECEHCEVELAQDGTEALALFREREFDGVF
                     TDVGMPGMSGWELAREIRQVNQTIPIAIITGWGEIVGSNEQRAAGVDWVVAKPFTADR
                     IAELVREINCRQAAAARVENVSTVAA"
BASE COUNT         1207 a         1656 c         1731 g         1213 t
ORIGIN      
        1 ggaagagtgc gagttatcga aaccggaacg ctgcggccgc agccgttgtt tgttgtgccg
       61 gatgttgaat cgacgggcga gagtggtttg atgagtctcg cgttgcatcc gcagttcagc
      121 agtaatcggt tcatctacat cgcgtacgca tacgcagtcg acaaggtacg cgtcgcgcgt
      181 tatcgagaga cgcccgaggg cctcgtcgat cgcaccgcca tcatcgagaa cattcccgcg
      241 gcgcagtatc acgccggttg ccgcattcgc ttcggtcccg acggcaagct ctacatcacg
      301 accggcgatg caaccgatcg gcagttggcc caacgtctcg attcactcgc cggtaaaacg
      361 ttacgtctga acgacgacgg ttccgtgccg caggacaatc cgttcgtcgg acaacagaac
      421 gcccggccgg aaatctggtc ctacggtcat cgcaatgcac agggaatgga ttttcaaccg
      481 ggcacgaacc tgatgttcca gacggaacat ggaccaagcg gattcgacgg cccgggcggt
      541 ggagacgaag tcaacattgt cgagcgcggc aagaactacg gttggccgct ggtccatcac
      601 caggaaacac gagctggaac cgagccgccg ctgctcgaat acacaccggc gtgcgcgcct
      661 gcgagcggcg cgttctatcg cggcgacgcg ttagcgcggt tcaagggaaa ctttttcttc
      721 ggttgtttgc gtggcgagag attgattcga gtcgaactgg atggacgccg cgttattcgt
      781 caggaagatt taatcaggga ttatggccgc attcgtgagg tcgaagaagg accggatgga
      841 tacttgtatt tttcaacgtc gaatcgcgac ggtcgcggaa agcccgcgtc ggacgacgat
      901 cggatcatga ggttggttcc ggctcggtaa gcagttagat tttttgtgcg agaattgcgg
      961 tcttgctcca gccgatcgct tctttacgcg ggaagcgata ctgatgaatg atgcggaaat
     1021 gcttttcagt ctgctctttc acttccttcg gcggatgact cttgaaacgg aataggattt
     1081 cgagcaggat gccaacggcg ctcggatgaa tcggcaggtg aagcagatga ccaccgggcg
     1141 cgatcacgcg cgcaagctcg gtgagtccat cctcaagctt cacgtattcg agcgcgcctg
     1201 aagtgaccac caggtcaact gactcgtctg caaacggtag gcacaagaga ttaccctgcg
     1261 caaacgtgac gtcgcgtttt cttcccggac tgtaatagag cgccttgcgc gccgcggcaa
     1321 ccgacgtcga cgaaagatcc agcgccgtga gcgctaccgg aaagcggatc gcacgcaaca
     1381 aagccagcgt caacaacccg gtgccacagc cggcgtcgag tatgtgtgca ccccgggaaa
     1441 cgggcagcgg atgagtctcg aagtactgat ccagcgcgcg gccgtaaccg ttcaacttga
     1501 aggtcagatc atagtaccgg gcgatccggt cgtagtaaga gcccgcgcga gccttggttt
     1561 tggttgcagt taaggcgtac tccatgagct tctcttaagc ctcacctcag ttacggattc
     1621 gtctgtcagt ttatttcatc ccggattggc tcgggccata atagcgtccc tgccaccatt
     1681 actcaaccga aaatccaaac actgacaata cttacggtca ttgaacctcc ggcaaccatg
     1741 acccgcaaga accgctccac agcgccgttc tttgaactga tgggtaattt ttcacggagg
     1801 aacaggtctc atgaggcgac ttctttggac cctggccgga gcaacatttc tactgactgc
     1861 tttacttggc accggcactg ccgtcctgct ccggagcggc cgggcggccg cgcagggctc
     1921 gcaatccgag cgggtcatca ccggcaaacg cgtccggtat ccgaactttg aactggacat
     1981 agtggtcgat ggtcggccac tgactgaata tcacgaaagt ggccgcgtgt acgtgaatgc
     2041 gctgcagggc gcggagtacg aactgcgctt gcgcaatccg tcggcggatc gtgtggctgt
     2101 cgcgctttcg gttgacgggc tcaacacgat cgacgcggaa cagacgtctg catggaacgc
     2161 cagcaagtgg gtcatcgaac cgtaccaaac gatcaccatc agcggctggc agatgagctc
     2221 ggaacgcgcg cggcgttttt atttcacgac cgagcgcgat tcgtatgcgg cgaagctggg
     2281 acggaaagcg aacgtcggcg tgatcacggc ggtgtttttc cgggaacgaa gacgagcgat
     2341 accgatcacg aggggacagg ttgacacttc ggggccggtc ccggccgcgg aacctgaatt
     2401 acgcgccgaa gcatcgcgcg atcgcgccgc tgcgacagga aacagcaagg ctgcaacagg
     2461 aatcggacgc tcggtgagac acgacgttag aagtatcgat atggagctcg attcaaaccc
     2521 ggccgaggag ctgacggtga gatacaaatt ttcccgtgac gggcggttct gtccggagcc
     2581 gtaaccacgg attaccggcg gattaggtcc gcggtgtaga gctggcggta gacgcggtag
     2641 ttcgacatca ctttttggac gtagcctttg gtttcgtcga acccgatttc tgacgtgaag
     2701 actccgcgat ctttgtgccc ggcgcgttcg agccagcgcg cgacgttatc ttcgccgccg
     2761 ttgtacgacg cggccacggg ctcgagcatg tcgggaaaca tctgcgtcag gtgttcgaga
     2821 tactcggcgc cgagcattat cgaagtttcc ggttggtaga gttgattctc acgcagtgaa
     2881 ttcagacctg cggccggcgc gtacttctgg gccgtatcga gtgtgagctg taaaagccca
     2941 cgcgcgcccg ccggagattt cgcaaagggc ttaaaaacgc tctcctgctt catcaacgcg
     3001 agaatgaaac gcggatcgag tttgcgcgct ttcgaggcgc tgagtatcgc ctgtcgataa
     3061 ggcgcgggat acgtatcggc gatgttggcg atcgcggagt tgacccgggc ttcacgttcg
     3121 ctcacgagct ccgcacgctc tttgcccgcg agcgctgcga gtctttgagt cgccagccag
     3181 ccgtaatacg agtcgatcga atcgggcacg gcgagataag ccgtgatcgc ttcattcttc
     3241 cggcccgctt gttcgagact gaaagctctg agatacgcga cttccgagcg cgaagtctgc
     3301 accgcttttg caaacgtccg ttgcgacaac tggtccgcca tcgcaacagc cttggaccac
     3361 tcgccttcgg aaacgtgtag acgcagcgcg ccaaacatcg cgttggtctc cgtcgcactg
     3421 ccggcaaatc gttgtctcgt cctggtgacc caaaccatcg cgtcggctgg acgattcgct
     3481 tcgcgcaacg tgtcgatcat gttcaggtgc gcggtgtcga tgcgttcgcc gttcgggtga
     3541 cgattgatgt actcctcgta gcgtgccgcg gactcggaaa acttgcccat gcgcagcagg
     3601 gaagcggcgc tgtagttcaa agcctcgcgc gcttctttcg ttccgggata cttctggacc
     3661 agctcgttga agacgacgta gccgtcctgg tagaccttgc tcaaaaagta cgaacggccg
     3721 atgccgagca acgcttccgc ggcgcgcggg tcctgcggat agttgtcgag cagcgcctgc
     3781 cagtgagcgc gcgcttcggg aaacgcgcgg tttccgaggt aaacactcgc gcggcgcatg
     3841 tgttcggccg gcgcaagctt cgggacactt ccgtcggcag aacgcccggc ggcgtcgctc
     3901 tggcgcacgt tcgacagcgt cgtatcacga gccgactgcg acgagctttg tactgttacc
     3961 aggagagaaa gactaaaaac ggcggcaatc ttcttcaaca cttgcttgat ttactccccg
     4021 tatgattcac gcggttcttc gatgatttca aacgtggttt ggatttctac tttcggtctc
     4081 agcgtgtcgg cgacgctgca atacttcgtt tcggaaagtt cgatagcgtg cgcgacggcg
     4141 ttcgaggaga gcgagcggcc ggtgagaatg tgatggacct tcatcgacgt gtaactgcgc
     4201 gggtactcgt cgcggcgctc gccggagatc tcgacggtgt aactcgtgac gtgctgacgt
     4261 ttctttttga gaatcgaagc aacgtctgtc gcggtgcacg agccgagtgc gacgagcagc
     4321 agttcgaccg gcgatggccc ggacgagcgt tgcgagtttg tgtcgagcac gatcgctctt
     4381 ccggccggcg tgatgccgac gaagagatcg tcttcaacaa acttcactac tgctttcgtc
     4441 gtcatccatc aaactccggc ggaagcataa cacaagcagc aacgttccaa cttcgttttg
     4501 agttcaagct ttagcttgcc gtaacaggca gcctaaaggc tgaactcaaa acgcgaactg
     4561 aagcacttgt tttcgtgtta tgatctgcgc gcggcaactc ctcaagtttg cctcacagaa
     4621 aaacagatca aggtgacgtc tcgacgtcct ccgttgccca gcggacgcct tgggtaaaca
     4681 gtggagggcc aatcatggct gatatccttg tcgtggatga cgacgacgtg atccgcgaca
     4741 ccctctgcga attgcttgcc gtggaccaca actgcgagca ggcaaacacc gcagaggacg
     4801 cactgcgaaa gttggaagcc cgatctttcg acgttgttct gacagacatt acaatgccag
     4861 gacttagtgg cagcgaatta ctcacacgcg tgctggagcg ttatcccggc actcccgtaa
     4921 tcatggtttc cggattgacc gatcaggagc aggcgcaaag cctgatcagt ctcggcgcgt
     4981 ttgattacct gctgaaaccg tttcgcttgg aagtggtgga ggaaagtgtg aagcgcgccg
     5041 tcgaacaccg gcacagaacg agcggctgat ctaagccgcc accgttgaga cattttctac
     5101 ccgcgcggcc gcggcttgac ggcaattgat ctcgcggacg agctccgcga tccgatctgc
     5161 cgtgaacggc tttgccacga cccaatcgac gcccgcggcg cgttgctcat ttgatccgac
     5221 gatctcgccc cagccggtga tgatcgcgat cggaatggtc tggttgacct gacgaatctc
     5281 gcgcgccagt tcccagccgc tcatccccgg cataccgacg tcggtaaaca cgccgtcaaa
     5341 ctctcgttca cggaagagcg cgagcgcttc agtgccgtcc tgggccaact cgacctcgca
     5401 gtgttcgcat tcgagaatct cactcaacag ttcgcgcacg aagtcttcgt cgtcgacgac
     5461 gagcaatctt gccggtggaa gcgtgtcggc cgccgcgacg agtggcgtcg gttcgggagc
     5521 ttcaacgatc agttcgcgtt tgacaagcgg cgtctcggcg atcttcgcga gcggcagcga
     5581 gatgcgaaac tccgtgccct tgccatattg cgactcgact tcgatgttgc cgctgtgccg
     5641 ccggatgatt ccgaaactga cggccagacc aagcccgaga ccggctgtgc ctttcgtagt
     5701 gaagaatgga tcgaagatgc gcgaacgcac ttcgggatac atgccgacac cggtgtccgc
     5761 gactttgatc acgacctgct cgccgacggt gcggctggac aacgtca
//
LOCUS       DASWTX010000883         2010 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_422832, whole genome shotgun sequence.
ACCESSION   DASWTX010000883 DASWTX010000000
VERSION     DASWTX010000883.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2010
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422832"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..622
                     /locus_tag="VGD38_13335"
     CDS             <1..622
                     /locus_tag="VGD38_13335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729053.1"
                     /translation="EQENGDDSFSELNRADPGFNSGWVQIMGPPDRIAQFKAIETSPE
                     TDPCLGTPYFGLQQLRWSPELLADSPAQALARLFVLPGSHYSEPEFSWKFAVDPGAIG
                     FVRGRGLGPQFEGDLFVGGARPFLEGGHLFHFNLTGNRRAIGVDDPRLEDRVADNICK
                     YDLTESESLLIGRNFGTVTDLQTGPNGNMFVVSIDTGSVFEIFRRK"
     gene            complement(624..>2010)
                     /locus_tag="VGD38_13340"
     CDS             complement(624..>2010)
                     /locus_tag="VGD38_13340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729054.1"
                     /translation="PVCQERLDVAPAFPSTVALFLKRTRAANKVNVTFDYETESFVPV
                     EDGEFVVVTSSEQAIVLPRAPRFGSRRDFYEYYQDYYHCPKPDAGEVQIVQPAAVVAT
                     ESGWRLETMGVLEVLLDQPKPRVMPVPVPPPVVPKVVPPAPKAAPLVREEVIVPKQPE
                     PAPVPIAAKQESTETPCSECGALVESRYAFCWKCGNALTPNSNSSRGGNPSRGTLLSS
                     AMAIEDDELTVQHEMRPATSSMFPWTTTKQSEHPSSSRGSVLKLIGIGGVAFLLLSLG
                     LFGLTRSTSSQAGSETATTTAPAPQQTVAESTPEPVNNAPVTVPAQLVNETKPEATPS
                     VSPEDELLARLRERRITATNSERPKIVEAFAKIERKYPRDYRFPYERAKLVVKGQQSG
                     ARNEAFKALSVAAERAIAAGKANEMLSGLETDKAGDFHRLAQGRQEWTRLVAALKRKD
                     TSLLAAKTQFQ"
BASE COUNT          393 a          595 c          590 g          432 t
ORIGIN      
        1 ggaacaagag aatggcgacg acagtttttc cgaactcaat cgcgccgacc cgggcttcaa
       61 ctccggttgg gtgcagatca tggggccacc ggatcgcatc gcgcagttca aagcgatcga
      121 aacgagcccg gaaactgatc cgtgtctcgg cacaccgtat ttcggtttgc agcaactgcg
      181 ctggtcgccg gagttgctcg ccgattcacc ggcgcaggcg ttagcacggt tgttcgtgtt
      241 gccgggttcg cactacagcg agccggagtt tagctggaag tttgcagtcg atccgggcgc
      301 aatcggattc gtgcgcgggc gcggtcttgg accacagttc gaaggcgatc tgtttgtggg
      361 tggcgccagg ccattcctcg agggcggaca cctgtttcac ttcaacctga caggcaacag
      421 gcgcgcgatt ggcgttgacg atccacggtt ggaagatcgc gttgccgaca acatctgcaa
      481 gtatgatctg actgaaagcg agagcctgct gatcggacga aacttcggca cggttacaga
      541 tctccaaacc ggtccgaacg gcaacatgtt cgttgtctcg atcgataccg gttcggtgtt
      601 tgaaatcttc aggagaaagt gaattattga aactgagtct tagcagctaa caggctcgtg
      661 tctttgcgct tcaacgcggc gacgagacgc gtccattcct gacgtccctg ggcaagccgg
      721 tgaaaatcgc cggctttgtc cgtttcgagc ccgctcaaca tctcgttcgc tttgcccgcc
      781 gcgatggctc tctcggccgc gaccgacagc gctttgaatg cttcgttgcg cgcgccggac
      841 tgctgtccct tcacgacgag cttcgcgcgt tcgtaaggaa aacgataatc gcgcggatac
      901 ttgcgttcga tcttcgcaaa cgcttcaacg atctttggac gctcggaatt ggtcgcggtg
      961 atgcggcgtt cgcgcaaacg cgccagcagt tcatcttcag gacttaccga cggcgtcgct
     1021 tccggtttcg tttcgttaac gagctgtgcg ggaaccgtta ccggcgcgtt gttcaccggc
     1081 tctggtgtgg attcggctac cgtttgctgt ggcgccggtg cggttgtagt cgcagtctca
     1141 gaaccggctt gcgaacttgt ggaacgcgtc aggccaaaca atccaagcga caacaacagg
     1201 aacgccacgc cgccgatacc gatcagtttc aaaaccgatc cgcggcttga agacggatgt
     1261 tccgattgct tcgtcgtggt ccacggaaac atcgacgaag ttgccggacg catttcgtgt
     1321 tgcaccgtca actcgtcatc ttcgatcgcc attgccgacg acaacagcgt tccgcgcgat
     1381 ggattgccgc cgcgcgatga attgctgttg ggcgtgagcg cgttgccgca tttccaacag
     1441 aatgcgtagc ggctttcgac gagtgcgcca cactcgctac acggagtctc agtgctctcc
     1501 tgcttcgcag cgatcggaac cggcgccggc tccggttgtt tcggaacgat gacttcttcg
     1561 cgaaccagtg gcgcggcttt cggcgcaggc ggaaccacct ttggaacgac cggcggcggc
     1621 acgggcacgg gcatcactcg cggtttcggc tggtccaaca acacttccag cacgcccatc
     1681 gtctcgagtc tccaaccgct ctctgtcgca acaacagccg cgggctgcac gatctgcact
     1741 tcacccgcat ccggcttcgg gcagtgatag taatcctggt agtactcgta aaaatcgcgg
     1801 cggctgccga agcgcggcgc acgcggcaac acgattgcct gttcgctact cgtcacgacg
     1861 acaaactcgc cgtcttcgac aggcacgaaa gattcagttt cgtaatcaaa cgtgacgtta
     1921 accttgttcg cggcgcgtgt gcgtttgagg aaaagcgcga ccgtggacgg aaacgccggc
     1981 gccacatcca gccgctcctg gcaaacggga
//
LOCUS       DASWTX010000884         2069 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_120741, whole genome shotgun sequence.
ACCESSION   DASWTX010000884 DASWTX010000000
VERSION     DASWTX010000884.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2069)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2069
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120741"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1513)
                     /locus_tag="VGD38_13345"
     CDS             complement(<1..1513)
                     /locus_tag="VGD38_13345"
                     /inference="COORDINATES: protein motif:HMM:NF022750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HEY0729055.1"
                     /translation="MPTLYDATVNLSLKPPVISTLTFLLFALILPAFAQNGGGAPQFS
                     RAPYQIGERLTYNVSYSAFPSAAHAEFHIVSRGTHFERDAVELRAHVQTMDVVNVALL
                     AINNDYTSYIDPVTGLPFRSEETVRDAIKTDESARELNQAAGSEAIPPKQRGFPGTYD
                     MLSAFYRARALPLGSGGTFHFSVRGAGGEYNVELRVTGRESVNTNVGSFSTIVTKVRV
                     SNSPLRNVRVYFSEDERHVPVLITAEIGDGDLRAELAASEIIAPKPIATPTPQTSVRP
                     GPIHLATPAPTVAPAANDDDLPFKVGEQLNYQIFLGPNPTPMGIATFQVKGRQRYFDR
                     DGLFLSVNAHTTNALAQVFVARDQIDSYVDPKALLPFRTVMNLIEGRRRLNQTLLMGQ
                     DNGVASTAEGLRIEMPVGTHDYLSFFYAVRTFNLTPARKSVTSMLVENKPKTLFVTSQ
                     KREAIQLGSQSVPAIALTITTDDPEPDKYQLRMWISDDRRRLPLRISCATQLGP"
     gene            complement(1548..>2069)
                     /gene="pyrF"
                     /locus_tag="VGD38_13350"
     CDS             complement(1548..>2069)
                     /gene="pyrF"
                     /locus_tag="VGD38_13350"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF001273.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0044205 - 'de novo' UMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEY0729056.1"
                     /translation="QVAGSARSAAQLGVSLFTLHASGGAEMMQRAVEAVAEVAEREAT
                     PRPAVLAVSVLTSLDAASLSQIGINSSPEETVLRLVKLAEQSGVDGVVASPQEAARIR
                     ASVAKREFLIVTPGIRPAGNDAGDQRRVSTPEAALNAGADYLVVGRPITAAANPVAAA
                     REIAAEMERAQSN"
BASE COUNT          397 a          585 c          646 g          441 t
ORIGIN      
        1 acggaccgag ttgagttgca cacgagatac gcagcggcag ccggcgccgg tcgtcgctga
       61 tccacatgcg tagttgatat ttgtccggct ccggatcgtc ggtggttatc gtcaaagcga
      121 tcgccggcac tgactgactt cccaactgaa tcgcttcgcg tttttgcgaa gtgacgaaga
      181 gcgtcttcgg cttgttttca accagcatcg aggtcacgct ttttcgcgcc ggcgtcaggt
      241 tgaacgtcct cacggcgtaa aagaacgaaa ggtagtcgtg tgtgccgact ggcatctcga
      301 tgcgcagacc ttcggcggtg cttgcgacgc cgttgtcctg acccatcagc aacgtttgat
      361 tcaaccgccg ccgaccttcg atcagattca tcacggtgcg aaacggcagc aacgcttttg
      421 ggtcgacgta ggaatcgatc tgatcgcgcg cgacaaacac ctgcgcgagt gcgtttgtgg
      481 tatgcgcatt cacgctcaga aagagaccat cgcgatcgaa atagcgctgg cgtcctttga
      541 cttgaaacgt cgcgatgccc atcggcgtcg ggtttggacc aaggaagatc tgatagttga
      601 gttgttcgcc gaccttgaac ggcaagtcgt catcgttcgc cgctggcgcg actgttggcg
      661 ccggagtcgc taaatgaatc ggaccgggac gaaccgaagt ctgcggcgtt ggcgtcgcga
      721 tcggtttggg cgcgatgatc tccgaggctg cgagttccgc acgaaggtcg ccgtcgccga
      781 tctcggcagt tatcagaacc ggcacgtgac gttcgtcttc gctgaagtag acgcgcacgt
      841 ttcgcagcgg cgagttgctg acgcgaactt tggtgacgat cgtgctgaag gagccgacat
      901 ttgtattgac ggactcacgc ccggtgacgc gcagttcgac gttgtattca ccgcctgcgc
      961 cgcgtactga aaaatggaac gtgccaccgc ttccgagcgg cagtgcacgc gcgcgataga
     1021 acgcggacag catatcgtaa gtgcccggaa agcctctctg cttgggcgga atcgcttcgc
     1081 tgccggccgc ctggttcaac tcgcgagctg attcatcagt cttgatcgcg tcgcggactg
     1141 tttcttccga acgaaaggga agtccggtta ccggatcgat gtagctggtg taatcgttgt
     1201 tgattgccag cagggcgacg ttgaccacgt ccatcgtctg gacgtgcgcg cgaagctcga
     1261 cggcgtcgcg ttcgaaatgc gttccgcgcg agacgatgtg aaactcagcg tgcgccgcgc
     1321 tcggaaaagc cgagtacgaa acgttgtaag tcagacgttc gccaatctga tacggcgcac
     1381 gggaaaactg aggcgcgccg ccgccgttct gtgcaaaagc cggaagaatc agcgcgaata
     1441 ggaggaatgt aagtgtagag atgaccgggg gtttcaagct gagattcacc gtcgcatcat
     1501 ataatgtcgg caatttacac gctactgctt atgaggagtt cccgccatta gttgctttgt
     1561 gcgcgctcca tttcggccgc gatttcacgc gcggcggcga ctggattggc ggcggcggtg
     1621 attgggcgtc cgacgacgag gtagtcggcg cccgcgttca gcgcggcttc gggtgtggac
     1681 acgcggcgct gatcgcccgc gtcgtttcct gccggacgta ttccgggtgt gacgatgaga
     1741 aattctcgtt tcgcgacgct tgcgcggatt cgtgccgctt cctgaggcga agcgacgacg
     1801 ccgtcaacgc cggactgttc cgcgagtttc actagccgca acactgtttc ttccggactc
     1861 gagttgattc cgatttgcga aagcgaggcc gcgtccaagc ttgtgagtac gctgacggcc
     1921 aacaccgcag gacgaggcgt ggcttcgcgt tcggcaactt ccgcaacggc ttcaaccgcg
     1981 cgctgcatca tttccgcgcc gccgcttgcg tgtagcgtaa agagcgagac gccgagttgc
     2041 gcggccgaac gcgccgaacc cgcaacctg
//
LOCUS       DASWTX010000885         1668 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_184007, whole genome shotgun sequence.
ACCESSION   DASWTX010000885 DASWTX010000000
VERSION     DASWTX010000885.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1668
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184007"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..212)
                     /locus_tag="VGD38_13355"
     CDS             complement(<1..212)
                     /locus_tag="VGD38_13355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729057.1"
                     /translation="MVAIIHKRSWRDFDWILALLAIGIVLFGTIQIRNAQPTEPYWVK
                     QLIGLGIGLVAMLAIAFTDYRKLLNLS"
     gene            complement(215..>1668)
                     /locus_tag="VGD38_13360"
     CDS             complement(215..>1668)
                     /locus_tag="VGD38_13360"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HEY0729058.1"
                     /translation="GEISPEQLKQQASKDKGLKPGDIIGLSGLEQIYDDYLRGKDGYR
                     EVVVDSRGRIQDEIEIVDPIPGRDLITTIDLDLQHAAEDQLANSATQRGVLIAMDPNN
                     GEVLALASYPTFDPNLFSQRITTKEGKAEYAALLADPETPLLNRAIQSRYPPGSTWKI
                     PMAVAGLQQGAITIDHSNIACGGGITIGNKFTRCMGNHGAPDVKRAITVSCDGYFYRL
                     GLKMGIDGIVQMVDEFDLNKRTGIDLPNEVVSWTPSREFKRRMQPRDPEWRDIDTVYA
                     SFGQVYDIITPISLIRSISAVSMSGQMYIPHLLKEVPAYGDLPAVKFAPLDTSRPNPK
                     VIPIPKDIHDTVVEGMWAVVNGGGTGARIAMAGFDIAGKTGTAQVVGLGKDVGKNKDH
                     SWFVSYAPAYKPEIAMVALIENSGFGGTHAAPAVRGVYDVYYRNTRNEEPPGAVQIAK
                     AEKPADAAAAAKPKPVATTRKPSAPQQATALSN"
BASE COUNT          296 a          483 c          504 g          385 t
ORIGIN      
        1 gagagattga gcagcttgcg gtagtccgta aacgcgatgg ccagcatcgc cacgagcccg
       61 atgccgagtc cgatgagttg tttgacccaa tacggttcgg tcggttgcgc gttgcggatc
      121 tggatcgttc cgaacaacac gatcccgatc gccaggagcg cgaggatcca gtcgaaatca
      181 cgccaactac gtttgtgaat tatcgcgacc attactaatt gctaagtgct gttgcctgct
      241 gcggggcgga tggtttccgc gtggttgcca ccggcttggg cttggccgcg gccgcagcgt
      301 cggccggttt ttccgctttc gcgatctgca cggctccagg aggttcttcg ttacgcgtgt
      361 tgcgatagta aacgtcgtaa acgccacgaa ccgcaggcgc cgcgtgcgtt ccaccgaatc
      421 ctgagttttc gatcaacgcg accatcgcga tctcgggttt gtaagccggc gcgtaactga
      481 cgaaccacga gtggtccttg ttcttgccga cgtctttacc gaggccgacg acctgcgccg
      541 ttcccgtctt tccggcgata tcaaatcccg ccatcgcgat acgcgcgccg gtgccgccgc
      601 cgttcaccac cgcccacatg ccttcgacaa ccgtgtcatg gatgtctttc ggtatcggga
      661 ttactttcgg gttcggccgc gaggtgtcca atggcgcaaa tttcactgcc ggcagatcgc
      721 cgtaggcggg cacttccttg agcaggtgcg ggatgtacat ctggccactc atgctcaccg
      781 cggagatcga tctgatgagc gagatcggcg tgatgatgtc gtagacctgt ccgaacgagg
      841 cgtagaccgt gtcgatgtcg cgccattccg gatcgcgcgg ttgcatgcgc cgcttgaact
      901 cgcgcgatgg cgtccagctc acgacttcgt tcggcaagtc gatgccggtg cgcttgttga
      961 gatcaaactc gtcaaccatt tggacgatgc cgtcgatgcc catcttcaaa cctagacgat
     1021 agaagtatcc gtcgcaggag acggtaatcg cgcgcttgac gtccggcgcg ccatgattgc
     1081 ccatgcagcg cgtgaacttg ttgccgatcg tgatgccgcc gccgcacgcg atgttcgagt
     1141 gatcgatcgt gatcgcgcct tgttgaagtc cggcaaccgc catcgggatt ttccaggtcg
     1201 agcccggagg ataacggctt tgaatcgcgc ggttgagcag aggcgtttcc gggtcggcca
     1261 acagcgccgc gtattcggct ttgccttcct tcgtcgtgat tcgttgtgaa aagagattcg
     1321 gatcgaacgt cggatacgac gcgagcgcca ggacctcgcc gttgtttgga tccatagcga
     1381 taagcacgcc gcgctgcgtc gctgaattcg cgagctgatc ttccgcggcg tgttggagat
     1441 cgagatcgat ggtcgtgatc aggtcgcggc cgggaatcgg gtcgacgatt tcgatctcgt
     1501 cctgaatacg cccgcggctg tcgacgacga cttcgcgata accgtctttg ccgcggaggt
     1561 agtcgtcgta aatctgttcg agaccactga gaccgatgat gtcgcccggt ttgagacctt
     1621 tatcttttga cgcttgctgc ttgagttgct ccggactgat ctcgccga
//
LOCUS       DASWTX010000886         3316 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_407824, whole genome shotgun sequence.
ACCESSION   DASWTX010000886 DASWTX010000000
VERSION     DASWTX010000886.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3316
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407824"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1570
                     /locus_tag="VGD38_13365"
     CDS             <1..1570
                     /locus_tag="VGD38_13365"
                     /inference="COORDINATES: protein motif:HMM:NF023284.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3376 domain-containing protein"
                     /protein_id="HEY0729059.1"
                     /translation="SHGQRAPHVSPVKELVLKLMSDIEEAVKKVSPKPDSPSVVLDYF
                     LGKPNGATRSYRSDSPEEECNRRMQAFLEDERQDHVVKQFELMAEELRENVLEAKRKA
                     ETESVNLFSSKDTKPVTGDPALDDAIWIARNALGHYYQDYEDYDLLTYPIMFETGVGE
                     ADPIDIIRISPEDAKQLIDERATGCHKLAGSALGHFGAFLARQWRQNDILWGRLDGAE
                     RIISALLPNHPLRQQLIGEAQAQIICETVAPMGKKERNALLAESLMRTRTRKAESGQL
                     DDFIRRLRENSTSDPKLNQQLKDLIDPNELRDYYEDNFRTRSKLEPESALRSAARATT
                     VVGKILDSMSKKRGVNSKYSMWIIRLGQIFWSLVEVAVPQSFPDLIFRHWLKLVYFLE
                     LLLVVGSTVLLAKEVQQFALLAFGLTAGVHLAVVLLRDLIESRNRWVNLAKAIGAALL
                     VGLIIVGGLSVSAMLGGAFGWNVIWTIRNFHFTEPGWGINLKSLTRVLLILIIAAVFL
                     WSIRKDLKAFIRRS"
     gene            1575..2519
                     /locus_tag="VGD38_13370"
     CDS             1575..2519
                     /locus_tag="VGD38_13370"
                     /inference="COORDINATES: protein motif:HMM:TIGR00654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HEY0729060.1"
                     /translation="MPSFRFVQFDVFTDKAFCGNPLAVFPEAQGISDERMMQIAREMN
                     LSETVFVLPADKENVLRRLRIFTPMREIPFAGHPIVGTWTALALEDVVPVPEGGTGWQ
                     RIFHEVGIGVLPVDIEFKDGKPVQVEMTQGKFQIISEIEDVHEQAELARALGLAREDL
                     DESLPIQVITTGLSCLVVPVRSLADLRDCHINSTLLSEIYQRHGGMGCHAFTRETIEV
                     GASRAHARFFAPADNIPEDPATGSACGALGGYLIHHGGLNLEPEDGRYKFVIEQGDFI
                     HRPSRINLSVKGAAGNVEEVKVGGPAVLVARGEVVFDD"
     gene            2509..>3316
                     /locus_tag="VGD38_13375"
     CDS             2509..>3316
                     /locus_tag="VGD38_13375"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEY0729061.1"
                     /translation="MTTDRDMFDLVIIGAGPAGISAAEAAAKEGLDYLVIEKGTIANT
                     IRLYPVGRTLFSTPNELEMSEGSLKPLREKPTREELLSHYIHFVLDKDLRINTGERVV
                     DVSGDIEQGFFITTDRAEYRAARVLFAIGAMDIPRRLNVPGEDLPKVHHLFVEPYAYV
                     RKDALVVGGGNSAAEAALFLAEEGARTTMAIWREDWENRDPKAGAMKHWVRTPLEAEI
                     AAGRLRVVLYKHVDEIHEDDVVLTTEDGEVLTLANDVVFVLVGSEADLTML"
BASE COUNT          691 a          895 c         1054 g          676 t
ORIGIN      
        1 aagccacggc cagcgcgctc cgcacgtcag tcccgtcaag gaactcgtac tgaagttgat
       61 gagcgatatc gaagaggccg tgaagaaggt ctcgccgaaa cccgactcgc cgtcggtcgt
      121 gctcgactac ttcctcggca aaccgaatgg cgcgacgcgt tcataccgca gtgattcgcc
      181 ggaagaagag tgcaaccggc ggatgcaggc gtttctcgaa gacgagagac aggaccacgt
      241 agtgaagcag tttgagctga tggctgaaga gctcagggaa aacgttctcg aagcaaagag
      301 aaaagccgag acggaaagcg tcaacctgtt ttcttcaaaa gacaccaagc cggtcacggg
      361 cgaccccgcg ctcgacgacg cgatctggat cgcgcgcaac gcgctgggcc attactacca
      421 ggattacgaa gactacgatc tgctgacgta tccgatcatg tttgagaccg gcgtcggcga
      481 agcagatccg atcgacatca ttcgcatcag tcccgaagac gcaaagcaac tgatcgacga
      541 acgcgccacg ggttgtcaca agctcgcggg ttcggcgttg ggccacttcg gcgcgtttct
      601 cgcgcggcag tggcggcaaa acgacattct gtggggccgg ctcgacggcg cagaacgcat
      661 catctcggcg ctgttgccga accatccgct gcgacagcaa ctgatcggcg aagcgcaggc
      721 gcagatcatc tgcgaaacag tcgcgccgat gggtaagaaa gaacgcaacg cgctgttggc
      781 ggagtcgctg atgcgcacgc gcacgcgaaa agcggagtcg ggccaactcg acgatttcat
      841 acggcgcctg cgtgagaaca gcacgagcga tccgaagctc aatcaacagc tgaaagactt
      901 aatcgatccc aacgagctcc gcgattacta cgaagacaac ttccgcacgc gcagcaaact
      961 cgaacccgaa agcgcgctgc gttcggccgc gcgcgccacg accgtcgtcg gcaagattct
     1021 cgactcgatg tcgaaaaagc gcggcgtgaa cagcaagtat tcaatgtgga tcatccgcct
     1081 gggccagatc ttctggtcgc tcgttgaagt cgcggtgccg cagagttttc ccgatctgat
     1141 ctttcgccac tggctgaagc tggtttactt cctcgaactg ttgctggtcg ttggcagcac
     1201 ggtgttgctc gcgaaggaag tgcaacagtt tgcgttgctg gcgtttggtc taacagccgg
     1261 tgtgcatttg gcggttgtgc tgttgcgcga cctgatcgag agtcggaacc gttgggtgaa
     1321 tctcgcgaaa gcgatcggcg cggcgctcct tgttggactg atcatcgtcg gcggcttgtc
     1381 cgtgtccgcg atgttgggcg gcgcttttgg ttggaacgtc atctggacca tccgaaattt
     1441 ccatttcacc gagccgggct ggggaattaa cctcaagagc ctgacgcgtg tactattgat
     1501 tctgatcatc gcggctgttt tcctgtggtc gattcgcaag gacctgaagg cttttatcag
     1561 aaggagttaa cgacatgccc tcttttcgct tcgtacaatt cgacgtgttc accgacaagg
     1621 cgttctgcgg caatccactc gcggtctttc cggaagcgca aggcatcagc gacgaacgca
     1681 tgatgcagat cgcgcgcgag atgaatctct cagaaactgt gtttgtgctt ccggctgata
     1741 aggagaacgt gttgcggcgt ctgcgcatct tcacgccgat gcgcgagatt ccgtttgcgg
     1801 gccatccgat cgtcgggacg tggaccgcgc tcgcgctgga agacgtggtg ccggtgccgg
     1861 aaggcggcac gggttggcag cgcatctttc acgaagtcgg catcggcgtg ttgccggttg
     1921 atattgaatt taaagacggc aagccggtgc aggtcgagat gacgcagggc aagtttcaaa
     1981 tcatcagcga gatcgaggac gttcacgaac aagcggaact cgcgcgcgcg ttgggactcg
     2041 cgcgtgaaga tctcgacgag agtttgccga tacaagtgat cacgaccggc ttgtcgtgtc
     2101 tcgtggtgcc ggttcgatcg ctggcggatc tgcgcgactg ccatatcaat tcaaccttgc
     2161 tctccgagat ttatcagcgt catggcggaa tgggttgtca cgcgttcacg cgcgagacga
     2221 ttgaagtcgg cgcttcgcgt gcgcacgccc ggttctttgc gccggccgat aacattccgg
     2281 aagatccggc aacgggcagt gcgtgcggcg cgctcggcgg gtatctcatt catcacggcg
     2341 gcttgaattt ggaaccggaa gatgggcgtt ataagtttgt gattgaacag ggcgacttta
     2401 ttcatcgtcc cagccgtatc aatctctcgg tgaaaggcgc ggcggggaat gttgaagaag
     2461 tgaaggttgg cggaccggcg gtgctcgtcg cgcgcgggga ggtcgtattt gacgactgac
     2521 agagacatgt ttgacctggt cattatcggc gctggaccag cgggaatttc cgcggcggaa
     2581 gcggcggcga aggaaggtct cgactacctc gtgatcgaga aaggcacgat cgcgaacacg
     2641 attcgcttgt atcccgtcgg gcgcacgctc ttttccacgc cgaacgagct cgagatgagc
     2701 gagggctcgt tgaaaccgtt gcgcgaaaag cccacgcgcg aggagttgtt gtcgcactac
     2761 attcatttcg ttctcgataa agatctgcgg atcaataccg gcgagcgcgt cgtggacgtc
     2821 agcggcgaca tcgaacaggg tttcttcatc acgaccgacc gcgcggagta tcgcgccgcg
     2881 cgtgtgctgt ttgcgatcgg cgcgatggac atcccgcggc ggttgaacgt gccgggcgaa
     2941 gatttgccga aggtccatca tctgtttgtc gagccgtacg cttacgtgcg caaggacgcg
     3001 ctggttgtcg gcggcgggaa tagcgccgcc gaggccgcgc tgtttctggc cgaagagggc
     3061 gcgcgcacga cgatggcgat ctggcgcgag gattgggaaa accgcgatcc gaaggcgggc
     3121 gcgatgaagc attgggtacg cacgccgctc gaagccgaga tcgcggccgg acgtctcagg
     3181 gtcgtgcttt acaaacacgt cgacgagatt cacgaggacg atgtcgtgtt gacgactgaa
     3241 gacggcgaag tgttgacctt ggcgaatgac gttgtgttcg tgctggtcgg cagtgaagca
     3301 gatctgacga tgcttc
//
LOCUS       DASWTX010000887         2318 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_364458, whole genome shotgun sequence.
ACCESSION   DASWTX010000887 DASWTX010000000
VERSION     DASWTX010000887.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2318
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_364458"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1551)
                     /locus_tag="VGD38_13380"
     CDS             complement(<1..1551)
                     /locus_tag="VGD38_13380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0729062.1"
                     /translation="MMAICFLILAAIIATDTTANTEAPLQIAFSESRSGDLTARQTDV
                     FSISVEQGQLLRFSIDKGDLALLTILYDPAGNKLLEHISQDFEVVEISFPIDIAGTYR
                     IELQSREQTAEPRRYDIKIHDLKNVTVLDRKDSEARQAVARAEVLRANWTEASLRQAI
                     AEYDKAVSIWTSISDFASASRAMLKAAGVYFLLSEYAEALKRYQGVEKLAVGEWLLRA
                     RALSQMALLQSSSGNNDLAQQQLTEALDLFEQNGAHQNAIAANIYGEVLSSLAEVTYA
                     KGNLVKSSQQYESALKAFQSDRKGEAKARLSLSYIAGSLGDPEKALAHVSRSLELYRA
                     INNKSGEGFALVALGLSRSSKRDENGAIKLHGEAIKLFRTIGDKYAEGIALNALGQAH
                     FNLREDSIALSNFQDALQNFEDIGALDAVTMAAFKIAEVHQRNGQLDQELRYLERCLN
                     VSRAAGKMRTEALALTRIANAYAAQGRNDLALRQHLKVLKFYEAKGDRRGQAIALNAY
                     GDFLLLKLE"
     gene            complement(1939..>2318)
                     /locus_tag="VGD38_13385"
     CDS             complement(1939..>2318)
                     /locus_tag="VGD38_13385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729063.1"
                     /translation="APGRGKAVDRQGLASVFGLYRRHLRVVVLNACFTKTQARSISQV
                     IDYSIGTGKGIGDKGGVAFAGAFYRALGFGKSIREAFESAKAELGLTRMPRTQGIELF
                     VRDGLKKDDRFPWMFGGEAGSQA"
BASE COUNT          479 a          667 c          600 g          572 t
ORIGIN      
        1 ttccagtttc agaagaagga agtctccata cgcattcaac gcgatggctt gcccacgacg
       61 atcgcctttc gcctcgtaaa acttcaggac tttcagatgc tgccgcaacg ccagatcgtt
      121 tctgccttgc gcagcatagg cgttcgctat cctggtaagg gcgagggcct ccgtgcgcat
      181 ttttccggca gcgcggctta catttaggca acgttcgaga tacctcagct cctggtccaa
      241 ctggccgttc cgctggtgta cttcggcgat cttgaaggct gccatggtga cggcgtcgag
      301 agcacctatg tcttcaaagt tctgtaaggc gtcctggaaa ttactgagtg cgatcgagtc
      361 ctctcttaga ttgaaatgag cctgaccaag agcgttgagc gctatccctt cagcatactt
      421 atcgccaatc gtccgaaaga gctttattgc ctcgccatgc aatttaatcg cgccgttttc
      481 gtctcgcttc gaagaacgcg atagtccgag ggcgacaagt gcgaatccct cgccgctctt
      541 gttgttaatc gcccggtaga gttcgaggga acgagagacg tgggccagcg ccttctccgg
      601 gtcacccagg ctgccggcta tgtagcttaa agacagtcgg gcctttgctt cgcctttccg
      661 atcgctctga aatgctttca gagcactctc gtattgttga gacgacttta ccaggttacc
      721 ttttgcgtaa gtgacttctg ccagactgct caacacttcg ccataaatgt tcgcagcgat
      781 cgcgttttgg tgggcgccgt tttgttcaaa caggtcgagt gcttcagtga gctgctgttg
      841 ggccaaatcg ttattaccgg aagaagattg caaaagagcc atctgactta gagcccgcgc
      901 ccgcaacaac cactccccga cagcgagttt ttcaacaccc tgatatcgct tgagggcttc
      961 cgcatactca ctcagtaaaa agtagacgcc ggctgctttc agcatcgccc gtgaagcact
     1021 ggcgaagtcg gatatagacg tccagatcga caccgccttg tcatactccg ctatcgcctg
     1081 ccggagtgaa gcttctgtcc agttcgcccg cagcacctct gcacgagcca cagcctgccg
     1141 cgcctcgctg tcttttcggt ccaatactgt cacattcttc agatcgtgga tttttatgtc
     1201 gtagcgccgg ggttcggccg tttgctcccg cgactggagc tcaattcgat aggtgcccgc
     1261 aatatctatc ggaaaagaaa tctccacgac ctcgaaatcc tgactgatgt gttccaacag
     1321 cttgttgccg gccgggtcgt aaagaatcgt caacagcgcg aggtcgcctt tatcgatcga
     1381 aaatcgaagc agttggcctt gttccactga aatgctgaac acatcggtct gccgtgcggt
     1441 aaggtcaccg cttctcgact cactgaatgc gatctgcagc ggcgcttcag tgttcgcggt
     1501 ggtatctgtg gcgataatcg ccgcgaggat caaaaaacag atcgccatca tgcttaagag
     1561 cgctcgtgtt ttaggcctgc tgctttttgt tgattgcatt cgaatgcagt ttcatctctg
     1621 agaattattg agaattgtga agaaggtagc ccgaaacgag ctaccttctc aagagcggcg
     1681 caagctggtt accgtccatc gcgcacggcg cggccgtgac gggctgaggg ttttcctgat
     1741 ctgccggacg cttctcgcca atcctccagt gttccgagcc tcgtacccgg ggccttgcga
     1801 ccggagttgt tcttcgcaat cattcgctgt ttttgcttca caataggcat ttgtttctct
     1861 ccttctatga aagtgcgaga cgccgcagtc acctcgcacg gttgattaag gccggacgtg
     1921 ttcacgtcac gcgacgcatc acgcctgcga tccggcttca cctccgaaca tccacggaaa
     1981 acgatcgtct tttttgagac cgtcccgaac gaaaagctcg attccctgcg tgcgcggcat
     2041 ccttgttaga ccaagctccg ccttcgccga ctcgaatgct tctctgattg acttgccgaa
     2101 accgagcgca cggtaaaagg cgccggcgaa ggcaactccg cctttgtcgc cgatcccttt
     2161 accggtgccg atggagtaat cgattacttg agagatcgag cgggcctgtg ttttggtgaa
     2221 acacgcgttg agcacaacca ctcgcagatg ccggcgatag agtccgaaaa ccgaagcgag
     2281 accctgccgg tcgacggcct tacctctgcc cggagctc
//
LOCUS       DASWTX010000888         1909 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_317680, whole genome shotgun sequence.
ACCESSION   DASWTX010000888 DASWTX010000000
VERSION     DASWTX010000888.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1909
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317680"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1909
                     /locus_tag="VGD38_13390"
     CDS             <1..>1909
                     /locus_tag="VGD38_13390"
                     /inference="COORDINATES: protein motif:HMM:NF037959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fused MFS/spermidine synthase"
                     /protein_id="HEY0729064.1"
                     /translation="QIWQRLQPGFFTFTLLRFALSCLLLLVPTTWMGATLPVLSAALL
                     RAAGHDSNSVTRLYACNLVGAIVGTLAAGFVLLPAFGVRTTIIIAAGINIVVGVIAIG
                     LQRRDFADVPGGIDAELASGAEMGVGDSSGFWLFAAFASGFVTISTQVSWTRILTMII
                     GSSTYAFSIVVALFLIGLAGGAWIVGRKDRAARLRPAIMVVEVITAVSLVLSLFVLNK
                     IPALLIRLGMGFQVASWGGLLALQIVSATLLILVPALLMGMVMPLVLVWASNQVAAVN
                     RVGRSYAVNTVGAIAGAFVTGFVLIPKTSIRFTLLLSAATCLLVGLLAYRPVGEGLQP
                     VVRRSLAIGLAPVLTIVLFILAPRMNLADLSIGAYDSLVRELAQTREIAVDNAQLSGS
                     NVRELLMFREGPTATVSVRRDQDTVSMAINGRTNASDSIYDMPTQVMLGQLPLLIAPK
                     QDNGLIIGYATGITVGSMLQSPIKSVTCVELEPTTVEASEFFNHVNNRPLDDPRTKLI
                     IDDARTYLRVTRERYDIIVSEPSHPWVPGVANLFTQEFFELGRSRLSEQGIFVQWVQI
                     YQLSTESLRSVLATYTRVFPHVLMFRVGGSSRGKDLLLVGSNQRLNIDLNRPPQRCDD
                     ELMRKELARVN"
BASE COUNT          304 a          464 c          667 g          474 t
ORIGIN      
        1 cgcagatctg gcagcggctg caaccggggt ttttcacgtt cacgctgtta cggtttgcgt
       61 tgtcgtgttt gctgctgctc gtgccgacga cgtggatggg cgcgacgctg ccggtgcttt
      121 cagcggcgct gttgcgcgcc gcgggtcacg attcgaattc ggtgacgcgg ctttatgcgt
      181 gcaatcttgt cggcgcgatc gtgggcacgc tcgcagcggg gttcgtgttg ttgcccgcgt
      241 tcggcgtgcg cacgacgatc atcattgcgg cgggtatcaa tatcgtcgtc ggggttattg
      301 cgatcggcct tcagcggagg gattttgcgg atgtgccggg cgggatagac gcggagttgg
      361 cgagcggcgc ggaaatggga gttggtgata gttctggatt ttggttgttt gcggcgtttg
      421 cttccgggtt tgtgacgatc agcacgcagg tttcgtggac gcgcatactc acgatgatca
      481 taggttcgag cacgtatgcg tttagcatcg tggtcgcgtt gttcttgatc ggacttgcgg
      541 gtggcgcatg gattgtgggc cgcaaggatc gagcggcgcg gttgcgtccg gcgatcatgg
      601 ttgtcgaggt gatcacggcc gttagtttgg tgctcagttt gtttgtgctg aacaagattc
      661 cggcgttgct gatcaggctc ggaatgggat ttcaggttgc gtcgtggggc gggttgctgg
      721 cgttacagat cgtttcggcg acgctgctga ttctcgtgcc ggcgttgctg atgggaatgg
      781 tgatgccgct cgtgctggtg tgggccagca accaggttgc agccgtgaat cgcgtgggac
      841 gaagttatgc agtgaacacg gtcggcgcga tcgcgggcgc gtttgtgacc gggttcgtgt
      901 tgattccgaa gacgagcatc aggtttacgt tgttgctgtc ggcggcgacg tgtttgcttg
      961 tgggattact tgcgtaccgc cccgtgggag agggattgca gcccgttgtg cgacgtagtc
     1021 ttgcgattgg tcttgctccg gtccttacga tcgtgttgtt catactggcg ccgcggatga
     1081 atcttgccga tctttcgatc ggtgcttacg acagtctcgt gcgcgagctg gcgcagacgc
     1141 gtgagatcgc cgttgataac gcacaactgt ccggttcaaa cgttcgcgaa ctcctgatgt
     1201 ttcgcgaagg tccaacggcg acggtttcgg tgcgcaggga tcaggacacg gtctcgatgg
     1261 ccatcaacgg ccgcacgaat gcgtcggaca gcatctacga catgccgacg caggtgatgc
     1321 tgggccaact gccgctgctg atcgcgccga agcaggacaa cggcttgatc atcggctacg
     1381 ccacgggcat cacggtcggc tcgatgttgc agtcgccgat caagtcggtc acgtgtgtcg
     1441 agctcgagcc gacgacggtc gaggcttccg agtttttcaa tcacgtcaac aatcggccgc
     1501 ttgatgatcc gcggacgaag ttgattatcg acgatgcgcg aacctatctg cgcgtgacgc
     1561 gcgagcgcta cgacatcatc gtgagcgagc cgagccatcc gtgggtgccg ggcgtggcga
     1621 atctgtttac gcaggagttt tttgagctgg gccgttcgcg gctgagcgag caggggatct
     1681 ttgtgcagtg ggtgcagatc taccagttgt cgactgagag tctgcgttcg gtgctggcga
     1741 cgtacacacg ggtgtttccg cacgtgctca tgtttcgtgt tggtggatcg agccgcggca
     1801 aggatttgtt gttggtgggg agcaatcagc ggttgaatat cgatctcaat cggccgccgc
     1861 agcgatgtga tgatgagctg atgagaaaag agctggcgcg cgtcaattt
//
LOCUS       DASWTX010000889         2282 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_56591, whole genome shotgun sequence.
ACCESSION   DASWTX010000889 DASWTX010000000
VERSION     DASWTX010000889.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2282
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56591"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1139
                     /locus_tag="VGD38_13395"
     CDS             <1..1139
                     /locus_tag="VGD38_13395"
                     /inference="COORDINATES: protein motif:HMM:TIGR01845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HEY0729065.1"
                     /translation="NLGLARSNQFPQFGAGADLTSGRTSRNGQPIPGVGGRTSSIGSM
                     FLNLLTFELDIFGRRRAETRAARAELRVAEEDRKAVMTTVVSDVATGYFSLLELDSEL
                     ELAKRTLATREETLRLIRARQQGGLATLLDVRQAEELVYQASQTIPDTERLIEQTENQ
                     INLLLGDRPAPITRGKPLNEQQDLPAVPAGLPSALLERRPDIRAAEQNLVAQKAFVSA
                     ARKAYFPTISLTGLLGFQSNQLSSLFSGPSGAWTFVPQITQPIFTGGRLKSNVRFARA
                     QQELAVIQYDQTIQTAFREVSDALVQYRKVKEIRTQQELLVATLRDRVRLAYLRYQGG
                     VDTLLNALDADREMFDAERSLTLTKRDELLSLVQLYKALGGGWQ"
     gene            1158..>2282
                     /locus_tag="VGD38_13400"
     CDS             1158..>2282
                     /locus_tag="VGD38_13400"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0729066.1"
                     /translation="MRSLAVLLILCLCVHAQEPQDVVRISTSLVQVDVVVTKDGKQVT
                     DLKLEDFEIREDGRVRPITNFAFVSVNSTPSKLATEPSSTPTTTTPQPYEVKRTVAIV
                     VDDLGLSFESMANLRQYLRKFVGESLRPNDLVAIIRTGGEVGALQQFTTDPRVLGNAI
                     AELKWNPCSRVGANVVSAERSMIVQVPPEAEMRGRVQADRSPGSNQVQRSTTANESNP
                     CSVGNSVDYSLRAIRFILRGMQDLPGRKSLLIVSDNLPMERQEYAPADFGFKRPVMDY
                     ANIIDVWTQATVFNDGLHGLAEQAIRSSVVIYGVSSQRLQTTGVQPADELGFPPQTMV
                     RGRGGSDTTAPNNNPLSRLMNSRSAELQKNFDGAELLAKET"
BASE COUNT          479 a          701 c          671 g          431 t
ORIGIN      
        1 cgaatctcgg gctcgcgcgc tcgaatcagt ttccgcagtt tggggccggc gccgatctga
       61 cgagcgggcg cacgtcgaga aatggacaac cgattcccgg tgtcggcggc agaacgagca
      121 gcatcggcag catgtttcta aacctgctga cttttgagct ggatattttt ggccgtcgac
      181 gcgcggagac aagagccgcg cgcgcggagt tgcgcgtcgc ggaagaagat cgcaaggcgg
      241 tgatgacgac ggtcgtgagc gacgtcgcga cgggttattt cagcctgctc gaactcgaca
      301 gcgaactcga gcttgcgaag cgcacgctcg cgacgcgcga agaaactctg cggctaatcc
      361 gcgcgcgaca gcagggcggt ctggcgacat tgctggacgt gcgacaggcg gaagagcttg
      421 tttaccaggc atcgcaaacc attcccgaca ctgaacgctt gatcgaacag actgagaacc
      481 agatcaatct tctgttgggt gacaggcccg cgccgatcac gcgcggcaag cctttgaacg
      541 agcaacagga tctgcccgcg gtgcccgccg gtttgccatc cgcgctgctc gaacgccggc
      601 ccgacattcg cgcggccgaa cagaacctcg tggcgcaaaa ggcgttcgtc tccgccgcgc
      661 gcaaagctta ctttccgacg atcagcttga ccggactgct tggttttcag agcaaccagc
      721 tctcgagtct cttcagtggt ccaagcggcg cgtggacttt cgtcccgcag atcacgcagc
      781 cgatcttcac cggcggacgc ctcaaatcaa acgtgcggtt cgcgcgcgcg caacaggaac
      841 tcgccgttat tcagtacgat caaacgatcc aaacggcctt tcgcgaagtt tccgacgcgc
      901 tcgtgcagta tcgcaaagtg aaggagatcc gcacgcagca ggaactgctc gtggccacct
      961 tgcgcgatcg cgtgcgcctt gcttacctgc gctaccaggg cggcgtcgac acgctgctga
     1021 acgccctcga cgcggaccgc gagatgtttg acgccgagcg cagtctgaca ctgaccaaac
     1081 gcgacgagct tctgtcgctg gtacagctct ataaagcttt gggtggcggc tggcaatagt
     1141 gatagtcttt ggctcccatg aggagccttg ccgtcctgtt aatcctgtgt ctgtgcgttc
     1201 acgcgcaaga gccgcaggat gtcgtgcgca tctcgaccag cctggtccag gttgacgtcg
     1261 tcgtaacgaa agacggcaag caggtcacgg atctaaaact cgaagacttt gaaatacgcg
     1321 aagacggccg cgttcggccg atcacgaact tcgcttttgt ttccgtaaat tccaccccct
     1381 caaaactcgc aactgaaccc tcttcgactc ccactacaac cacaccgcaa ccgtacgaag
     1441 tcaaacgcac ggtcgcgatc gtggtcgacg atctcggctt gtccttcgaa agcatggcca
     1501 atctccgcca gtacctgcgt aagtttgtcg gcgaaagcct gcgtccaaac gatctcgtcg
     1561 cgatcatccg caccggtggc gaggtcggcg cgctgcaaca gttcacgacc gatccgcgcg
     1621 tgctcggcaa cgcgatcgcc gagttgaaat ggaacccgtg cagccgcgtc ggcgcgaatg
     1681 tcgtgagcgc cgaaagatcg atgatcgttc aggtcccacc ggaagcggag atgcgtggcc
     1741 gggttcaagc cgatcgttcg cccggcagca atcaggtgca aagatcgact acagctaacg
     1801 aatcgaaccc gtgctcggtc ggcaactcag ttgattattc tttacgcgcg atacgtttca
     1861 tcctgcgcgg catgcaggat cttcccggcc gcaagtcgct gctgatcgtt tccgacaact
     1921 tgccgatgga gcggcaggaa tacgcgcccg cggatttcgg cttcaagcgt ccggtcatgg
     1981 attacgcaaa catcatcgac gtctggacgc aggcgacggt tttcaacgac ggtcttcacg
     2041 gactcgcgga acaggcgatt cgttcgtcgg tcgtgatcta cggcgtcagt tcgcaacggc
     2101 tccagacgac tggagtgcaa ccggcggacg agctcggctt tccaccgcag acgatggtgc
     2161 gcggccgcgg cggatcagac acgacggcgc caaacaacaa tcctctatca cgcttgatga
     2221 acagccgctc cgccgagctg caaaagaact tcgacggcgc ggagttgctc gcgaaagaga
     2281 cc
//
LOCUS       DASWTX010000890         3525 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_364483, whole genome shotgun sequence.
ACCESSION   DASWTX010000890 DASWTX010000000
VERSION     DASWTX010000890.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3525
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_364483"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(122..835)
                     /locus_tag="VGD38_13405"
     CDS             complement(122..835)
                     /locus_tag="VGD38_13405"
                     /inference="COORDINATES: protein motif:HMM:NF013353.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036361 - racemase activity, acting on
                     amino acids and derivatives [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HEY0729067.1"
                     /translation="MTLKQKTRLGIVGGMGPLASAEFLRTIYDYSVADNVEQGAPVVS
                     LYSDPTVPDRTEALLKGDDTAVFEQFTQAVGYLTATGATKIVVCCMTIHYLLPKLPPA
                     LSSNIVSLLDVIYDNLPKRGRSLVLCSSGTRKLQLFESHERWEQFKDFLIFPDERDQR
                     QLHDDIIFPLKRNPDMPPLVSALRSMLARYEVDSFVAGCSEIHIIAKHLTASANGHKV
                     YGCIDPLDILARELTEGRL"
     gene            complement(845..2713)
                     /gene="asnB"
                     /locus_tag="VGD38_13410"
     CDS             complement(845..2713)
                     /gene="asnB"
                     /locus_tag="VGD38_13410"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HEY0729068.1"
                     /translation="MCGLTGFFDSTHGRPADRNLLVRMTTTLVHRGPDSEGYFVEGPV
                     GLGFRRLAIIDLSSGDQPLYNEDESIVLLCNGEIYNYIALRKELEQKGHVFRTASDVE
                     VLLHLYEEEGIGFLNRLNGQFAFAIYDRKKKLLFLARDHFGINPLYYTVAGGVFIFAS
                     EIKAILEHPLVEREVELTGLDQTFSFPGLVSPRTMFKGIHSLKAGHYLLVQNGDVQVR
                     EYWDLDYPRDGEIAYDKTESYYVERLDELLTRSVNYRLQADVPVGFYLSGGLDSSMIA
                     ALINKVSPGSHRHSFSIDFNDRHISESKYQQLMARYVDSVHHQITFDWPEINDRLVEM
                     IYHCECPVKETYNTCSMALSAAAKSNDITVVLTGEGADELFAGYVGYRFDQYGIRDSG
                     KYDLETMLEEELRERLWGDKDLFYEIDQHAFREIKRALYATRLNEQFGQFDCLNAGLV
                     NKDRLKDRHYLHQRSYLDFKLRLSDHLITDHGDKMALANSVEARYPFLDIDVVEFSKQ
                     IPPHIKLNSLTEKYVLKKIAEALVPREIINREKFGFHAPGSPFLLQQNSEWIQDLLSY
                     ERIKRQGYFNPDTIELLKQQYSREGFRLNLPFESDLLIVVLTFGIFLDRFQLPNHN"
     gene            complement(2725..>3525)
                     /locus_tag="VGD38_13415"
     CDS             complement(2725..>3525)
                     /locus_tag="VGD38_13415"
                     /inference="COORDINATES: protein motif:HMM:NF018112.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729069.1"
                     /translation="TLIPPCLAIVVNILEAVLAVQQGVRCVSLGYAEQGNRAQDIAAI
                     RMLGVLADEVIRNLGFKDVRIKTVFQQYMAAFPDTASRSEEMIYNSAITAALSGATRV
                     ITKTAVESVRIPTLTDNLNSIGIVLRGVSDAAFVPVDEARVSEECAMIRRETEAILES
                     VIYCGGGSIAAGIVKAFEKGCLDIPFAPSIHSKGLVMTARDTSGAVRFLSPGRLQLDS
                     ETLEFHRHKMAERRRAEEMLSPSHNYLLIEKDVLRIPRGQYERWPLSN"
BASE COUNT          734 a          965 c         1035 g          791 t
ORIGIN      
        1 agcctgtttg tgcggtcgct caactcggcg tagctgacga ctctatccgc acgcgcaatc
       61 gccgttttgt tgccgtgcgt ggcggccact gacgagaatc gcgcctgcac actttcatgc
      121 ttcataaacg tccctctgtt aactcgcgcg cgagaatgtc caacggatcg atgcagccgt
      181 aaactttgtg cccattcgcg gaagcggtca ggtgtttggc gatgatgtga atttccgagc
      241 agcccgctac gaaagaatca acctcgtatc gcgccagcat ggatcgcagt gcgctgacca
      301 gcggaggcat gtcgggattt cttttcaacg ggaagatgat gtcgtcgtgt agctggcgct
      361 gatcgcgttc gtcagggaag atgaggaagt ctttgaactg ttcccaccgt tcgtgactct
      421 cgaagagctg cagcttgcga gtgccgctcg aacagagcac gaggctccgg cctcgcttcg
      481 gcaggttgtc gtaaatcaca tcgagcagtg aaacgatgtt cgagctcagc gcaggcggca
      541 gcttgggcag caggtaatga atcgtcatgc agcacacgac gatctttgtc gcgccggtcg
      601 cggtgagata accgaccgct tgcgtgaatt gttcgaagac cgcggtgtcg tctcccttga
      661 gcaacgcctc cgtgcgatcc ggaacggtcg ggtcgctgta gagcgacaca acaggcgcgc
      721 cctgctccac gttgtccgcg acgctatagt cataaatcgt gcgcagaaac tccgccgaag
      781 ccagcggccc cataccgccg acaattccca gtcgcgtctt ctgtttcaac gtcatggtgt
      841 tcgctcagtt gtggttcggg agttggaagc ggtcgagaaa aatgccgaag gtgaggacga
      901 cgatcagcag gtcgctttcg aagggaaggt tgagccggaa gccttcgcgc gagtactgct
      961 gtttgagtag ttcgatcgtg tcggggttga agtagccttg acgcttgatg cgttcatagg
     1021 agagcagatc ctgtatccac tccgaattct gttgcagtag aaacgggctg ccgggcgcgt
     1081 gaaatccaaa cttctcgcgg ttgatgatct cgcgaggaac caaagcttcg gcgatttttt
     1141 tgagaacgta tttctccgtc aggctgttga gcttgatgtg cggcggaatc tgtttcgaga
     1201 actcgaccac gtcaatatcc agaaacgggt aacgcgcttc gaccgagttc gccaacgcca
     1261 tcttgtctcc gtgatctgtt atcaggtgat cggaaagccg cagcttgaag tcgagataag
     1321 agcgttggtg aagatagtgg cgatccttga gccggtcctt atttactaat cccgcgttga
     1381 gacaatcgaa ctgcccgaac tgctcgttga gccgcgtcgc gtaaagcgcg cgcttgattt
     1441 cgcgaaaagc gtgctggtcg atctcgtaga ataaatcctt gtcaccccac agacgttctc
     1501 tcaactcttc ctcgagcatc gtctcgaggt cgtacttccc cgaatcgcga atgccgtact
     1561 gatcgaagcg ataaccaacg tagcccgcaa acagttcgtc cgcgccctcg ccggtaagaa
     1621 cgacggtgat gtcgttgctc ttcgccgcgg cggagagcgc catcgagcat gtgttgtaag
     1681 tctctttaac cggacactcg cagtgataaa tcatctcgac caggcggtcg ttaatctcgg
     1741 gccagtcaaa cgtgatttgg tgatgaactg aatcgacgta ccgcgccatc aactgctgat
     1801 acttcgactc gctgatgtgc cggtcgttga agtcaatgga gaacgaatga cgatgcgagc
     1861 cgggtgagac tttgttgatg agcgcggcga tcatcgacga gtcgagcccg ccgctcaggt
     1921 agaagccgac cggcacgtcc gcctgaaggc gatagttaac cgagcgcgtc aggagttcgt
     1981 cgagccgttc gacgtagtag ctttccgtct tgtcgtaagc gatctcgccg tcgcgcgggt
     2041 aatccaggtc ccagtattcc ctgacctgta cgtcgccatt ttggaccagc aggtagtgac
     2101 cggccttgag gctatgaatg cctttgaaca tcgtgcgcgg gctgacgagt ccagggaaag
     2161 agaacgtctg gtccaatccg gttaactcga cttcgcgttc gacgagcggg tgttcgagga
     2221 tggctttgat ctctgacgcg aagatgaaga cgccgccggc gactgtgtag tagagcggat
     2281 tgataccgaa gtgatcgcgt gcgagaaaca gcagcttctt tttgcgatcg taaatggcga
     2341 aagcaaactg cccattcaaa cgattcagaa acccgatgcc ttcttcctcg tacaagtgca
     2401 gcaacacttc aacgtcgctc gcggtgcgaa acacgtggcc tttttgctcc agctcttttc
     2461 gcagcgcgat gtagttgtag atttcgccgt tgcagagcag gacgatggat tcgtcttcgt
     2521 tgtagagagg ctgatcgccc gaggagaggt cgataatggc gagacggcga aagccgagcc
     2581 cgaccggacc ttcgacgaag tagccttccg agtccggtcc gcgatggacc agcgtcgtcg
     2641 tcatcctgac gagcaagttc ctgtcggccg gccggccatg tgttgaatca aagaatcccg
     2701 tgagcccgca cattttggag agccttaatt agacagcggc caacgttcgt attgcccgcg
     2761 cgggatgcgc agcacgtctt tctcgatgag caggtagttg tgagacggtg agagcatctc
     2821 ttccgcgcgg cgccgctctg ccatcttgtg tctgtgaaat tcgagcgtct cactatcaag
     2881 ttgaagacgg ccgggtgaga gaaagcgcac ggcgccgctc gtgtcgcgcg ccgtcataac
     2941 gagacctttg ctgtgaatgc tcggcgcaaa aggaatgtcg agacagcctt tctcgaaagc
     3001 cttgacgatg cccgcggcaa tgcttccgcc gccgcagtag atcacgcttt cgagtatcgc
     3061 ttccgtttct cgtctgatca tcgcgcactc ttcagacacg cgcgcttcgt caaccggcac
     3121 gaacgccgcg tctgacacgc cgcgcagcac gatgccgatt gagttgagat tgtccgtgag
     3181 ggtcgggatg cgcacagatt caaccgcagt cttggtgatc acgcgcgtcg cgccggaaag
     3241 cgcggcggtg atcgcggagt tgtagatcat ttcttccgag cggctcgcgg tgtcgggaaa
     3301 cgccgccatg tattgttgaa ataccgtctt gatcctgacg tctttgaaac cgagattgcg
     3361 gatcacttca tcagccaaca cgccaagcat gcggatcgcg gcgatgtcct gcgcgcggtt
     3421 gccctgttcc gcgtagccga ggcttacaca cctgacgcct tgttggaccg cgagcacggc
     3481 ctcaaggatg ttgacgacga tcgcaagaca cggcggaatc agtgt
//
LOCUS       DASWTX010000891         2182 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_407995, whole genome shotgun sequence.
ACCESSION   DASWTX010000891 DASWTX010000000
VERSION     DASWTX010000891.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2182
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407995"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..426
                     /locus_tag="VGD38_13420"
     CDS             <1..426
                     /locus_tag="VGD38_13420"
                     /inference="COORDINATES: protein motif:HMM:NF018652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729070.1"
                     /translation="AAAGYEHYEISNLCRPGFESRHNTKYWTGARYFGFGCSSHSYDG
                     ESRRWSNHRDVLEYVKLVEKGSSPIKEEQILTEKDIKAESLFLGLRMMRGVNRDLCKD
                     YETDLARFREAGLLELDGDFIKLTRTGALLSNEVFSAFV"
     gene            423..1079
                     /gene="cmk"
                     /locus_tag="VGD38_13425"
     CDS             423..1079
                     /gene="cmk"
                     /locus_tag="VGD38_13425"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004127 - cytidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HEY0729071.1"
                     /translation="MIIAIDGPSGSGKSTLGRMLARELNLLYIDTGSMYRAVALATIE
                     ARIDPADKEAVVTVAEVAEIDLQGDPDSLKVSLNDRDVTDEIRTETVTEMSSVVSTIP
                     GVRRAMVARQREMGQRGAVLNGRDIGTVVFPEADIKFFLTAAPEERAERRFKEDQLTN
                     SSVSLEQTLSEMIERDRRDSTRADSPLKIADDAIVIDSSGLSVEQVFARMMEHVHRHH
                     "
     gene            1060..1650
                     /locus_tag="VGD38_13430"
     CDS             1060..1650
                     /locus_tag="VGD38_13430"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEY0729072.1"
                     /translation="MFTGIIEELGSVRSIEERGENARIVIDARIVTEGTNHGDSIAVN
                     GVCLTALDIHDDSFAAGVSRETLLRSTLGSLKPGAPVNLERAVTPATRLGGHMVQGHV
                     DARGQFVSVDSHGESWTLRIAYPPEIARYLVFKGSVAVEGISLTIANLAEDYFEIAII
                     PKTWEVTNLSHLKPGDSVNLEVDVIGKYVERLLAFR"
     gene            1701..>2182
                     /gene="ribB"
                     /locus_tag="VGD38_13435"
     CDS             1701..>2182
                     /gene="ribB"
                     /locus_tag="VGD38_13435"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HEY0729073.1"
                     /translation="MAFATIDEAVADIRDGRMIIIVDDEDRENEGDLVCAAEKVTPEI
                     INFMARHARGLICLPLTEERCDELHLTTQVADNTSFLGTAFTVSIDARRGITTGISAA
                     DRATTILVAVDPKSRPQDLARPGHIFPLRAKDGGVLVRPGQTEASVDVARIAGLYPAG
                     V"
BASE COUNT          469 a          680 c          617 g          416 t
ORIGIN      
        1 gcggccgcgg gttacgaaca ttacgagatc tcgaatctct gccggccggg tttcgaatcg
       61 cgccacaaca caaaatactg gaccggcgcg cggtacttcg gtttcggctg ttcgtcgcat
      121 tcgtacgacg gcgaatcccg ccgctggtcc aatcatcgcg acgtgctcga gtatgtgaag
      181 ctggtggaga agggatcttc gccgataaaa gaagaacaga tcttaacgga gaaggatata
      241 aaagcggaga gtctgtttct cggtctacgt atgatgcgcg gcgtcaaccg cgatctgtgt
      301 aaagactacg aaaccgacct cgcacgattc cgcgaagccg gtctgctcga actggacggc
      361 gactttatta aactcacgcg cactggagcg ctcttatcta acgaggtatt ctccgcgttc
      421 gtatgatcat tgccatcgac ggtccatccg gatctggtaa atcaacactg ggacgaatgc
      481 tggcgcggga gctgaacctt ctctacatcg acaccggctc gatgtatcgc gccgtcgcac
      541 tcgccacgat cgaagcgagg atcgatccgg ctgacaagga agccgtcgtc acagttgccg
      601 aggtcgccga gatcgatctc cagggcgatc cggattcgct gaaagtctcg ctcaacgatc
      661 gcgacgtcac cgacgagatt cgcactgaaa ccgtgaccga aatgtcgtcc gttgtttcaa
      721 cgatccccgg cgtgagacgc gcgatggtcg cgcgccaacg cgaaatgggc caacgcggcg
      781 ccgtgctcaa cggccgcgac atcggcaccg tcgtctttcc cgaggcggac atcaaatttt
      841 ttctaacagc cgcgcctgaa gaacgcgccg aacgccgttt caaagaagat caattgacaa
      901 actccagcgt ctctctcgaa cagacgctct ccgagatgat cgaacgcgac cgccgcgatt
      961 caacacgcgc cgactcgccg ctcaagatcg ccgacgacgc gatcgtgatc gactcatcag
     1021 gcttgagcgt agaacaggtt tttgcacgga tgatggaaca tgttcaccgg catcattgaa
     1081 gaactcggca gtgtccgcag catcgaagag cgcggcgaga acgcccgcat cgtgatcgac
     1141 gcgcgaatcg tgaccgaagg cacgaaccac ggcgactcga tcgcggtcaa cggcgtctgc
     1201 ctgacggcgc tcgacatcca cgacgactct ttcgccgccg gcgtctcacg cgaaacactg
     1261 ctgcgttcaa cgctcggcag tctcaaaccg ggcgcgcccg tcaatctcga acgcgccgtg
     1321 acgcccgcga cgcgtctcgg cggacacatg gtgcaaggcc acgtcgacgc tcgcggccag
     1381 tttgtttcgg tcgacagcca cggcgaatcg tggacgctgc gcatcgcgta cccgccggaa
     1441 atcgcccgtt atctcgtttt caaaggctcg gtcgccgtcg aaggcattag tctaacgatt
     1501 gccaacctcg ccgaggacta cttcgaaatc gcgattattc ccaagacctg ggaggtcacg
     1561 aacctctcgc acctcaaacc cggcgacagc gtcaatctcg aagtcgatgt catcggcaag
     1621 tacgtggaaa gattactggc tttcaggtaa cattaccccg ctctgcaatt tccggccgaa
     1681 gctggattta ggaccatcac gtggcttttg cgaccattga cgaagccgtc gccgacattc
     1741 gcgacggccg catgatcatc attgtcgacg acgaggatcg tgaaaacgaa ggcgacctcg
     1801 tgtgcgcggc ggagaaagtc acgcccgaaa tcatcaactt catggcccgg cacgcgcgcg
     1861 gcctcatttg tttgccgctc accgaagagc gctgtgacga gcttcatctg accacgcagg
     1921 tcgccgacaa cacgtcattt ctcggcaccg ctttcaccgt ttccatcgac gcccgccgcg
     1981 gcatcacgac cggcatctcg gccgcggatc gcgcgacgac aatcctggtc gcggtcgatc
     2041 cgaagtcacg gccgcaggat ttggcgcgtc caggtcacat ttttccgctg cgtgcgaagg
     2101 acggcggcgt gctcgttcgt cccggtcaaa cagaagcgag cgtggacgtt gcgcggatcg
     2161 cggggctcta tcccgccggc gt
//
LOCUS       DASWTX010000892         3747 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_184087, whole genome shotgun sequence.
ACCESSION   DASWTX010000892 DASWTX010000000
VERSION     DASWTX010000892.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3747
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184087"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..566
                     /locus_tag="VGD38_13440"
     CDS             <1..566
                     /locus_tag="VGD38_13440"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF024754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HEY0729074.1"
                     /translation="KAQLTRLTRVLCTVVESSTPTEQLSAVLRFYRPLLKNKYDDVQR
                     RGRDLEHLQTIAKRYKTSAKLLEDVALDPTEVIQGNTTRRGSGFVTLSTVHSAKGLEW
                     DNVFLIWMTDGWFPANRFQDEFDDFEEERRLLYVATTRAKKDLHFVYPAVNVYAGPET
                     DGTPTLSRFLEPIPPSVLPHASRAGGE"
     gene            605..1012
                     /locus_tag="VGD38_13445"
     CDS             605..1012
                     /locus_tag="VGD38_13445"
                     /inference="COORDINATES: protein motif:HMM:NF014705.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosylmethionine decarboxylase"
                     /protein_id="HEY0729075.1"
                     /translation="MTLGTEWLIDASGCDAAALKDIERLRAVFDRVINDLDLNVVGEI
                     AWATFPHPGGVSGLALLSESHLACHTYPEFRAATFNLYCCRNRAAWPWENMLREMLGA
                     SEVHVRVFERMLIRETKAEAESMPALEEAAANR"
     gene            1009..2979
                     /locus_tag="VGD38_13450"
     CDS             1009..2979
                     /locus_tag="VGD38_13450"
                     /inference="COORDINATES: protein motif:HMM:NF025158.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4178 domain-containing protein"
                     /protein_id="HEY0729076.1"
                     /translation="MSVLVANCPACGGPVEFKSGQSIVVICSYCRSAVARTDRELKDL
                     GKVAELVETGSPLDVGVRGKWKDQNFELTGRAQLGHEMGGQWDEWYATFSNGWLGWLA
                     EAQGRFYLTFQYPIPEGVSVPAFDQLQLGQPITGLPWNTPLIVAETGRATALGAKGEI
                     PYLLTPGETYLYADLSGTNRSFGTLDYNESPPLVFLGTEVTLAELGITTTRTPEREER
                     RVGAAQLGCPNCGGPLELRAPDKTERVTCPNCNSLLDVNQGQLKFLKSLEPPPFQPVI
                     PLGSTGDVPEGKMTVIGAMQRSVTIDGVTYFWSEYLLYNPQIGFRWLVNSDDHWNYVR
                     AVPPGEVTESGKYANYSGKNYKIFQDAQARVEYVFGEFYWKVEVGEQVRGVDYVGAPY
                     MLSKEESRIHIADAGKQRVAAGEINWSLGTYVTVPQIETAFGVKDLPRPSSIAPNQPY
                     KHKWVYKYWLLFIVILLVVGFGTMVLSGSTKEVFSQTVTLPPLANADGTQVFFSQPFE
                     LAGRRNIRIVGESPVQNTWVYLEGDLINEETGVVVSFPIEISYYQGVEDGESWSEGGQ
                     KDSAYTSAMPGGRYVLRLEGQWERWQAPATIQVKIEQNVTHGFNLLLALIVLSIGPIV
                     MAFYHLSFEHRRWSESMFTSSGSANDDDDDEE"
     gene            2986..3162
                     /locus_tag="VGD38_13455"
     CDS             2986..3162
                     /locus_tag="VGD38_13455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729077.1"
                     /translation="MLKALYTIFGAGVVTLYAAAAMLGWEIGGGTRRQLPPDARQNGY
                     RSFHFWHYGLHGGK"
     gene            3159..3407
                     /locus_tag="VGD38_13460"
     CDS             3159..3407
                     /locus_tag="VGD38_13460"
                     /inference="COORDINATES: protein motif:HMM:NF015927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF350 domain-containing protein"
                     /protein_id="HEY0729078.1"
                     /translation="MMINSIVGLVVPLETLLPVLVTTIVFVVLGLIIFALAFLVIAKA
                     TPFSVRKEIEEDHNVALAIVIASVILGTALIIAAAVHG"
     gene            3440..>3747
                     /locus_tag="VGD38_13465"
     CDS             3440..>3747
                     /locus_tag="VGD38_13465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729079.1"
                     /translation="MKRPPLLFLNVLIVATCGLIYELLAGTLASYVLGDSVTQFSLII
                     GIYLFAMGVGSWLSRFIEKGLARRFVDIELAVAILGGFSAPVLFLTFARVSYFYAVLY
                     "
BASE COUNT          780 a         1084 c         1100 g          783 t
ORIGIN      
        1 acaaagcaca actcacacgg ctgacgcgcg tgttgtgtac ggtcgtcgaa agcagcacgc
       61 cgaccgagca actctcggca gtgctacgtt tctaccggcc gctgttgaag aacaagtacg
      121 acgacgtgca gcgccgcggc cgcgatctcg aacacctgca aacaatcgcc aagcgttaca
      181 agacttcggc aaaactgctc gaagacgtcg cactcgatcc gaccgaagtc attcagggaa
      241 acacgacgcg gcgcggcagc ggcttcgtca cgctctcgac cgttcactcg gcgaaaggcc
      301 tagagtggga caacgtgttt ctgatctgga tgactgacgg ctggtttccc gcgaatcgtt
      361 ttcaggacga gtttgacgat ttcgaagaag agcggcgcct gctttacgtc gcgacgacgc
      421 gcgcgaaaaa ggatctgcac ttcgtctatc cggcggtgaa cgtctacgcg ggtcccgaaa
      481 ccgacggcac gccgacgctc tcgcgttttt tggagccgat tccaccgtcg gttttaccac
      541 atgcgtcgcg ggcaggcgga gaataatgta aactgtgcgc ccgtgaacag ggattacgga
      601 aaagatgact ctcggcaccg aatggctcat cgatgcgagc ggctgcgacg cagccgcgct
      661 caaggatatc gaacgtttgc gcgcagtttt tgatcgcgtt atcaacgatc tcgatctcaa
      721 cgtcgtcggc gagatcgcgt gggccacgtt tccacatccc ggcggcgtca gcgggctcgc
      781 gctgctctcc gagtcgcatc tcgcctgtca cacgtacccg gaatttcgcg ccgccacttt
      841 caatctttac tgctgccgca accgcgcggc gtggccgtgg gaaaacatgc tgcgcgagat
      901 gctcggcgcg agtgaagttc acgtccgcgt cttcgaacga atgctcatcc gggaaacaaa
      961 agccgaagcc gaatccatgc ccgcactcga ggaggccgca gccaaccgat gagtgtgctc
     1021 gtagcgaatt gtccggcctg cggcggaccg gtcgaattca agagcggaca atccatcgtc
     1081 gtcatctgta gttattgccg ctcggccgtc gcgcgcaccg atcgcgaact gaaagatctc
     1141 ggcaaagttg ccgaactggt cgaaacggga tcgccgctcg acgtcggcgt gcgcggcaaa
     1201 tggaaagatc aaaacttcga gctcacggga cgcgcgcaac tcggtcacga gatgggcggg
     1261 caatgggacg agtggtacgc gacattttcc aacggctggc tcggttggct cgccgaagcg
     1321 caaggccgct tctatctgac gtttcaatat ccgattcccg aaggcgtcag tgttccggcg
     1381 ttcgatcaat tacaactcgg acaaccgatc acgggcttgc cgtggaacac gccgctgatt
     1441 gtcgcggaaa ccggacgcgc gaccgcgctc ggcgcgaaag gcgagattcc ctatctgctc
     1501 acgcccggcg agacttactt gtacgccgat ctctcgggca ccaatcgttc gttcggcaca
     1561 ctcgattaca acgaatcacc gccgctcgtc tttctcggca ctgaagtaac actcgccgag
     1621 ctcggcatca cgaccacgcg cacgccggag agagaggaac gacgcgtcgg cgccgcgcag
     1681 ctaggttgtc caaactgcgg cggcccgctc gaacttcgcg cgcctgataa aaccgagcgt
     1741 gtcacttgtc caaactgcaa ctcgttgctc gacgtcaacc agggacaact caagtttctg
     1801 aaatcgctcg agccgccgcc gtttcaaccg gtcatcccat tgggttcaac aggcgacgtg
     1861 cccgaaggaa agatgaccgt catcggcgcg atgcaacgca gcgtgacgat cgacggcgtg
     1921 acgtatttct ggagtgagta tcttctctac aacccgcaga tcggttttcg ctggctggtg
     1981 aacagtgacg atcactggaa ctacgtgcgc gcagtgccgc cgggtgaagt caccgagtcg
     2041 ggtaagtacg caaattacag cggcaagaac tacaagatct ttcaggacgc gcaggcgcgt
     2101 gtcgaatacg tgttcggaga gttttactgg aaggtcgagg tcggcgagca ggtgcgcggt
     2161 gtcgattatg tcggcgcgcc gtacatgctc tcgaaggaag agtcgaggat ccacatcgcc
     2221 gatgccggga aacagcgggt cgcggcgggc gagatcaact ggtcgcttgg aacgtacgtc
     2281 accgtgccgc agatcgaaac ggcattcgga gttaaagatc tgccgcggcc gtcgagcatc
     2341 gcgcccaatc agccttacaa acacaagtgg gtttacaaat actggcttct gttcatcgtg
     2401 atcctgctcg tcgtcggttt tgggacgatg gtgctttcgg gttcgacaaa ggaagtgttc
     2461 tcgcaaacgg tgacgctgcc gccgctggca aacgcggacg gcacacaggt gttcttcagt
     2521 cagccgtttg agctcgccgg gcggcgcaac atccgcatcg tgggcgagtc gccggtgcag
     2581 aacacgtggg tctatctcga aggcgatctg atcaacgaag aaacgggcgt ggtcgtgtcg
     2641 tttccgatcg agatctctta ttaccagggc gttgaagatg gcgagtcgtg gagcgaaggc
     2701 gggcaaaaag attcggcgta cacgtcggcg atgcccggcg gaagatatgt tttgcggctc
     2761 gagggacagt gggaacgctg gcaagcgccg gcaacgattc aggtcaagat cgaacagaac
     2821 gtgacgcacg ggttcaacct gctgctcgct ttgatcgtgt tgtccattgg tccaatcgtg
     2881 atggcgttct atcacctcag ttttgaacat cgacgctggt ccgagagcat gttcacctca
     2941 agcggatcgg ctaacgacga cgacgatgat gaggaataat tcaaaatgct aaaagcactc
     3001 tacacaattt ttggcgccgg cgtggtgacg ctctacgccg cggcggcgat gttgggttgg
     3061 gagatcggcg gcggtacgcg ccggcagttg ccgcctgacg cgcggcagaa tggctatcgc
     3121 tcgttccact tctggcacta cggcttgcac ggaggaaaat gatgatcaat tcaatcgtcg
     3181 gattggtggt accgctcgaa acactcttac cggttctggt gaccacgatc gtctttgtcg
     3241 ttttgggcct aatcatcttt gcgctcgctt tcctggtcat cgccaaagcc acgccgttct
     3301 ccgtgcgcaa agagatcgaa gaagatcaca acgtcgcgct cgcgatcgtg attgcttccg
     3361 tgatcctcgg taccgcgctg atcatcgccg cggcggttca cggctaacgc gcacgcgttc
     3421 gaatgtttaa gcaagcgaca tgaaacgccc gccgctactc tttctcaacg ttctcattgt
     3481 cgcgacctgc ggtttgattt atgaactctt ggcgggcact ctcgcgagtt atgtactcgg
     3541 cgattcggtc actcaattct cactgatcat cggtatctat ctcttcgcca tgggcgtcgg
     3601 ctcgtggctc tcacgtttca tcgaaaaagg tctggcccgg cgcttcgtcg atatcgagct
     3661 cgccgtcgcg atactcggcg gcttttcagc gccagtgctg tttctcacct tcgcacgcgt
     3721 cagttacttc tacgccgtgc tctactt
//
LOCUS       DASWTX010000893         5420 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_385698, whole genome shotgun sequence.
ACCESSION   DASWTX010000893 DASWTX010000000
VERSION     DASWTX010000893.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5420)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5420)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5420
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_385698"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..232)
                     /locus_tag="VGD38_13470"
     CDS             complement(<1..232)
                     /locus_tag="VGD38_13470"
                     /inference="COORDINATES: protein motif:HMM:NF024874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY0729080.1"
                     /translation="MRIEYLNHAAVIIKSGEQSLLCDPWFSGTAFGGGWGLQYDNPEA
                     LQKAAACTHLWISHFHPDHLHMPTLKQLAELSP"
     gene            complement(335..2479)
                     /locus_tag="VGD38_13475"
     CDS             complement(335..2479)
                     /locus_tag="VGD38_13475"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY0729081.1"
                     /translation="MPLGGPEFQLLLLLVSKHGQVVEKSEIMGTLWPDVEVEENNLTV
                     RMSALRRALGETKGNHPYIQTVARRGYCVIADVKELPSPLLTETVETHAQRDQPKVDE
                     EQPALQSVDSSTNVNVNPPRQSQNLRRFALYAVLAIAVLTTVLLLYVVLRPQKARESE
                     APAQSMEISRVTQNGRVRSAAISPDGQNIAYTAQNGEMASLWLQRAGTNNPLQLLPPA
                     KLYLQFPSFSRDGNTLYYSKCQPGCELHKMPVLGGVETALGIRADSRVTFSPDGKRMA
                     YLRSEVEPSGLVTARLYAANADGTGEEFLNWEAGDSVYQRGAPAWSPDGKVIAFSIIA
                     AETGRRRMKVIAVALADRKESTLIPPSWSNIRDVAWLPDGSTLVINGNESANSEPGMQ
                     VWRVPLSGGEARRITNDLNNYFSISLSVDGKKLIAHQWQTTFGLWIAPSENPSAATPV
                     TAGTLDRKDGQLGVSVAPDGRLIYVSDHSGKRDLWSVNADGTGLKQLTDASHKDLTPV
                     VSPDGRYIVFQTCRNATIDRGFNLWRVDADGRNPLQLTRGTYDSEPAFSPDGAWVVYV
                     SNEDHLPTLRRVPINGGDSVPLTAEFSQHPTFSPDGKLIAYYRMNQKQRDQRHVVFIP
                     AQGGAAIKTLPAPKNFGSVMQWAPSGDSLWYRDNTMTSIWVLPLDGKPSSALMKLTNQ
                     TLSTFSFSQDGRRLAYSSGPQQSDVVLITRFN"
     gene            3092..>5420
                     /locus_tag="VGD38_13480"
     CDS             3092..>5420
                     /locus_tag="VGD38_13480"
                     /inference="COORDINATES: protein motif:HMM:NF012403.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140658 - ATP-dependent chromatin
                     remodeler activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SNF2-related protein"
                     /protein_id="HEY0729082.1"
                     /translation="MLEADSHQYLTNVDLRTRPDLVFDDDAVEELWDLADSYDPATND
                     QLNTARREPEPAWKQQLHFLTSAVRANLHAESDEWPSGREIFYLIDQQSSRVSDKLFV
                     DVGYRERLMKGGWGKIKSQNLQLQHIPTLKDPTDRQILAILVGAREAWNPYAYGYTSY
                     TVSYRYALSKTLQDLVLPLMCSTQRCLLRSSTDKNAEMPMIEWDDGPAWRFSLALRPR
                     QTGGPADEYVLTGILRRGSEEIAATSAILTTDAIVIGPDLRAARMVSQDAQAWIEALR
                     RSGEFRIGLTEAEHLMEQLLETPSRPDLDLPEELQFERVRLAPVPHLKLRKPEYSSQS
                     RLDADLLFDYAGKLVKSFERRDGFYDRGAHRFIERDHDLEQSAIELLQPLGFRSTRNY
                     DGYQHFYLSSKNLPRAVTQLLGHGWKVEAEGKLYRNPTSSTLSVSSGIDWFELHGSVD
                     FGGGLEAKLPALLNALRRGQSMIALGDGSFGMLPEEWLQKYGLLASLGEASGDHLRFK
                     RTQTGILDALLAARPEITCDNTFARIRDEWQNFSGIKAIAAPPGFVGKLRDYQREALG
                     WFDFLQRFGFGGCLADDMGLGKTVQVLALLESRRNGTNKSASAKTRMAQRSSRAKAGP
                     SLVVVPRSLVFNWQQEAARFTPALRVLTHTGPERGKDCKHFKNYDLVISTYGTLRRDA
                     EQLQETEFDLVILDEAQAIKNARTESAKAVRLLRAKHRLALSGTPIENHLGELWSLFE
                     FLNPGMLGAASVFQLSTSGTRAPDDETRTLLARALR"
BASE COUNT         1173 a         1459 c         1593 g         1195 t
ORIGIN      
        1 cgggtgaaag ctcggcgagt tgtttcagcg tcggcatgtg caggtggtca ggatgaaagt
       61 gcgagatcca aaggtgggtg catgccgccg ccttctgcag ggcttcggga ttgtcgtact
      121 gtaatcccca gccaccgccg aaagccgtac ctgaaaacca cgggtcacac aataaagatt
      181 gttcgccgct ctttatgatt accgccgcgt ggttcaagta ctcgattcgc atttgtcggc
      241 cgcggatgct aaaccgacta aagcgagcca gtccttaaag aacaggcggc gaattcctaa
      301 aaagtgctaa caatttgcta agcgcggcaa cgggctagtt gaatcgcgtg atcagcacaa
      361 cgtcactctg ctgcggtccg ctcgagtaag cgagccggcg gccatcttgc gagaacgaga
      421 acgtggacaa ggtttggttg gtcagcttca taagcgcgct ggaaggtttg ccatccagtg
      481 gcagcaccca aatactcgtc atcgtgttgt ctcggtacca cagtgagtcg cccgacggcg
      541 cccactgcat aacggagccg aagttcttcg gagccggcag agttttgata gccgcgccgc
      601 cctgtgccgg gatgaaaacg acgtgacgct gatcccgctg tttctgattc atgcggtaat
      661 aggcgattaa tttgccgtcc ggcgagaagg tcgggtgctg cgaaaactcc gctgtcaaag
      721 gaacggagtc accaccgttg atcggaaccc tgcgtagtgt cggaaggtga tcttcattac
      781 tgacataaac gacccatgca ccatcgggcg agaatgccgg ctcgctatca taagttccgc
      841 gcgttagctg cagaggattg cgcccgtcgg catcaacacg ccagaggtta aatccacgat
      901 cgatagtcgc attgcggcac gtctggaaca cgatgtaacg cccatcgggc gagactaccg
      961 gcgtgaggtc tttatgtgat gcgtcggtta gttgtttgag ccccgtacca tcggcgttaa
     1021 cagaccagag atccctcttg ccactgtgat ccgaaacata gatcagccgt ccatcaggcg
     1081 ccacagacac gcctagctgg ccgtcttttc gatcgagtgt cccggccgtg accggcgtgg
     1141 cggcggatgg attttcggag ggcgctatcc acaagccgaa agtcgtctgc cactggtgtg
     1201 caatcagctt cttgccatcc accgagagac tgatactgaa atagttgttt aagtcgttag
     1261 tgattctgcg agcttcgccg cctgacagcg gcacgcgcca cacctgcatg ccgggttcag
     1321 aattagcgga ttcgttaccg ttgatgacaa gcgtgcttcc atccgggagc caggccacat
     1381 ctctgatatt ggaccaggat ggggggatga gcgtggattc ctttcgatcg gcgagcgcca
     1441 ctgcaatcac cttcatgcgt ctccgtccgg tttcagccgc gatgattgaa aaagctatca
     1501 ccttaccgtc aggcgaccac gcgggcgcac cacgttgata gacgctgtcg cccgcctccc
     1561 agttgagaaa ctcctcacca gtcccgtcgg cgttggcagc gtacaatctg gcggtcacta
     1621 aacctgatgg ctcaacttca gacctcaggt aggccatccg tttgccgtcc ggcgagaagg
     1681 tgacgcggct gtcggcgcgg ataccgagcg ccgtctcaac tccacccagt accggcatct
     1741 tatgcagctc gcagcctggt tggcacttgg agtagtaaag cgtgttgccg tcacgcgaga
     1801 acgatgggaa ttggaggtag agttttgctg gcggcaggag ctggagcggg ttgttggtgc
     1861 cggctcgttg aagccacagg ctcgccatct cgccgttctg ggccgtgtat gcgatgttct
     1921 ggccgtctgg cgaaatagcg gccgagcgga cacgtccatt ctgcgtgacc cggcttatct
     1981 ccatcgattg agccggtgct tctgactcgc gggctttctg cggccgcaac actacgtaga
     2041 gcagcaggac ggtggtcagg actgcgattg ctaaaaccgc gtacagcgca aagcgccgga
     2101 ggttttggct ttggcgtggc gggttaacgt taacgttcgt cgatgagtcg actgattgaa
     2161 gcgccggctg ctcttcatca actttgggtt ggtctctttg tgcgtgagtc tcgacagttt
     2221 cagtgaggag tggtgacggg agttccttca cgtcggcgat cacgcagtag ccgcgtcttg
     2281 cgaccgtctg gatgtatggg tgatttcctt tcgtctctcc gagagcgcga cgcaaagcag
     2341 acatgcggac ggtgagattg ttctcttcga cctcgacgtc cggccacagc gttcccatga
     2401 tctcgctctt ttcgacgacc tgaccgtgtt tgcttacgag tagcaggagc aactgaaatt
     2461 ccggcccacc gaggggcacg ggttcgccgt cgcgcgacag gcgccttgcg tgaggctcga
     2521 gcaggaacgg cccgaactcg tagtttaggt tatccggtgc gttcaaggtg ctgctggtat
     2581 cgctagttgg gtgtcgtcgg aaggattacg ggtgcggtag cactatgaaa gagcgtctac
     2641 aacatggttg agtgcgcacc gcgtccgacg cgtgcggtat cgtaacatga ccggcaacgc
     2701 ctgttgcagt gtgacgcaag ccgcaccata gtaagcatgt ggctgtgtag catactcggg
     2761 gcgcgcgttt cattcatacg agatgacaag tcttccccca gcctttagta tgtgccttga
     2821 actagactca aaaaaaatcc acgcagaaaa aatgtcacta acggcaaggt tctcgcacga
     2881 gtttgcgaat cggatacgcg atcgaggctt ggcgtatttc aaggctaacg ccgttgatat
     2941 tttcgagcac tcggaatcgg aagttgtcgc cacagtcaac ggagacaggg agtatctagt
     3001 caggttaacg ctggaccgta gatcactaaa cgtggcttgc acctgtccat acttcgaacg
     3061 gggagaggaa tgcaaacaca tctgggcgac gatgttggag gcagatagcc accagtacct
     3121 tacgaacgtc gatctgagaa cacgaccgga ccttgttttc gacgatgatg cggtggaaga
     3181 gttgtgggac ctcgcagatt cttatgatcc agcgacaaac gaccaactca acaccgccag
     3241 gagagaacct gagcccgcgt ggaagcaaca gctacatttc ctgacctccg ctgtgcgcgc
     3301 gaatctgcac gctgaatcag acgaatggcc ttccggtcgt gaaatctttt atctcatcga
     3361 ccagcaatcc tcgcgtgtga gcgacaaact cttcgtcgac gtcggctatc gcgagcgctt
     3421 gatgaagggt ggttggggaa agatcaaatc gcagaacctt caactccagc acataccaac
     3481 gttgaaagac cccacggacc ggcagatact cgccatcctc gttggcgcca gggaagcatg
     3541 gaatccttac gcttacggct acacgagtta cacagtttcg tatcgctacg cgctttcgaa
     3601 gacgttacag gatcttgtgt tgccgttgat gtgttctacc cagcgttgtc tgctccgctc
     3661 atcgacggat aagaacgccg agatgccgat gatcgagtgg gacgatggac cagcgtggcg
     3721 gttttcgctg gcgctcagac ctcggcaaac cggcggtccc gccgatgaat acgtgctaac
     3781 aggaattctt cgccgcggct cagaagaaat tgcggcgaca tccgcgattc tgaccactga
     3841 tgcaattgta atagggcccg acttacgcgc agcgcgaatg gtttcacaag acgcgcaagc
     3901 gtggatagag gctttgcgta ggtccggcga attcaggatt ggcttaaccg aggcggagca
     3961 cctgatggaa cagttgctgg aaacgccaag ccggcccgat ttggatttgc cggaagaact
     4021 gcaattcgag cgtgtgcgtt tagcgccagt gccgcatctg aaactgcgca aaccggagta
     4081 ttcgtcacaa tcaagacttg atgccgatct cctcttcgac tatgcaggaa agctggttaa
     4141 gagtttcgaa agacgagatg gtttttatga tcgcggcgcc catcgtttta tcgagcgtga
     4201 ccatgacctc gagcaaagcg cgatcgaatt gctccaaccg ctcggcttca gaagcacacg
     4261 caattacgac ggctaccagc acttttatct atcgtcgaaa aaccttccgc gggccgtcac
     4321 tcaactgtta gggcacggat ggaaagtcga agccgaaggt aaactctatc gcaatccaac
     4381 ttcgtcgact ctgtcggtca gctccggcat tgactggttc gagcttcacg gctcggtcga
     4441 tttcggcggc gggttggagg caaaactgcc ggcgcttctg aacgccttgc gacgtggcca
     4501 gtcaatgatc gcgctcggtg acgggagttt tggaatgctt cctgaagagt ggttgcagaa
     4561 gtatggcctg ttggcttcac tgggcgaagc cagcggtgac catttgcgtt tcaaacgaac
     4621 ccagaccgga attctcgacg ctctgctggc agcgcggcca gagattacgt gtgataacac
     4681 attcgcgcgc attcgcgacg agtggcaaaa ctttagcggc ataaaagcga tcgccgcgcc
     4741 acctgggttt gtgggaaaac tgcgcgatta tcagcgtgaa gcattgggct ggttcgactt
     4801 tttgcagcgc ttcggttttg gcggttgcct ggcggacgac atgggtttgg gcaagacggt
     4861 ccaggtgttg gcgctgctgg agtcgcgccg caacggaacg aacaagagcg catccgcgaa
     4921 aaccaggatg gcccaacgtt cgtcacgcgc gaaggccggt ccctcgttgg ttgtcgtgcc
     4981 tcgatcgctg gtttttaatt ggcagcagga agcggcccga ttcacgccgg ctttgcgcgt
     5041 gttgacccat acgggaccag aacgaggcaa agactgcaaa cacttcaaga actacgatct
     5101 ggttatatcc acctacggga cgctgcggcg cgatgccgag cagcttcagg aaactgaatt
     5161 tgatttagtg attcttgacg aagcccaggc aatcaagaat gccaggactg agtcggccaa
     5221 ggcagtccgg ctgttgcggg cgaaacaccg gctcgcgctg agcggtacgc cgatcgaaaa
     5281 tcatcttggt gagttgtgga gtctcttcga gtttctgaat ccgggaatgc tcggcgcggc
     5341 ttctgttttc cagttgtcga cgagcggaac gcgagcgcct gatgatgaaa cccgtacgct
     5401 gctcgcgcgc gctcttcgtc
//
LOCUS       DASWTX010000894         2481 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_297177, whole genome shotgun sequence.
ACCESSION   DASWTX010000894 DASWTX010000000
VERSION     DASWTX010000894.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2481)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2481)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2481
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297177"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(202..363)
                     /locus_tag="VGD38_13485"
     CDS             complement(202..363)
                     /locus_tag="VGD38_13485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729083.1"
                     /translation="MQTQPSTIETSFSPFRPGLKFESPNPTADPPDGGGGTGGGTTPQ
                     PPPEEEEEP"
     gene            complement(416..>2481)
                     /locus_tag="VGD38_13490"
     CDS             complement(416..>2481)
                     /locus_tag="VGD38_13490"
                     /inference="COORDINATES: protein motif:HMM:NF013727.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HEY0729084.1"
                     /translation="IASGLSNVGATVLLVAIAATGLLLATNFSFVRLYEIIVNAISSR
                     FAFIGKIPERFATWRQERRDLAQKRRETKAALKAEQEAARSTLKQTLNLTPAERVADF
                     MKEPPAPEPVKVLRAETAKTSEPQASLAATAAAGAASVPVPIVTGRASKRAIITSGDT
                     DEAEEVEEMVKGASVLRVKTEEIPSKLPVDATRKVDYNDYALPTLQFLNEAPPHSEQA
                     DAELLSLATRLAEKCKEFNVTGQIKHICPGPVVTTYEFKPDPGVKYSRVVSLVDDLCL
                     ALKAESIRIDRMPGKPHVGIEVPNPRRETIFLREVIESRAFQESGSKLTIALGKTIDG
                     LNYVADLAKMPHLLIAGTTGAGKSVGVNALIVSILYRARPDEVKFILIDPKRLELGLY
                     EDIPHLAAPIIVDPKLAARSLKWAVAEMERRYRDLAGWGVRNIDGYNTEIMRRNLIKE
                     YDDKGEPWKPLPYIVIIIDELADLMMTSGREVEESITRLAQMARAVGIHLVLATQRPS
                     VDVITGLIKANFPSRISFRVSSMIDSRTIIDTNGAEQLLGRGDMLFLPPGTSRLIRVH
                     GAFIDEAEIGRIVSHIKAQGPPAYDETITQSDEEALGLTAAEGDHDELFEEALRICVE
                     MKRASTSVLQRRLRIGYGRAAAILDVMEREGLIGQADGSRPRPVLGRAYEMVAEWDEM
                     NVAEE"
BASE COUNT          445 a          708 c          780 g          548 t
ORIGIN      
        1 gggttgaagc aaccctggga acaggcacac acaacgatgt gcaacgccga aggtgttggc
       61 aagcttgcca acgctttcag cgttagaagg cagtccttca tcaatcccag ggttgaagca
      121 accctgggct gaaactcgct aacgccttcg gcgttagaac caacgccttc ggcgtttgga
      181 attgttcggc gttcccgccg tttacggctc ttcttcttcc tcgggcgggg gctggggtgt
      241 tgtcccgccg ccggtgccgc cgccgccgtc cggcggatcg gcggttggat tcggggactc
      301 gaacttcaaa ccggggcgaa acggtgagaa ggaggtttca atggtggaag gttgagtctg
      361 cattgttgtt tctttccgtc gctaacgcga cttgtctggg attgaaagaa aactactact
      421 cttctgccac gttcatttcg tcccactcgg caaccatctc ataagcgcgg ccgagtacgg
      481 gacgaggacg agaaccatcc gcttgtccga ttaaaccttc gcgttccatg acgtcgagaa
      541 tcgcagcggc gcggccgtag ccgatacgca aacgccgttg caacaccgaa gtcgaagcgc
      601 gtttcatctc gacgcaaatc cgcaacgctt cttcaaacaa ctcgtcgtga tcgccttcag
      661 ccgccgtgag accgagcgct tcttcgtctg actgcgtgat cgtttcgtcg tacgcaggcg
      721 gtccctgggc cttgatgtgc gagacgatgc ggccgatctc agcttcgtcg atgaaggcgc
      781 cgtgcacgcg aatgagccgc gacgtgcccg gcgggagaaa cagcatgtcg ccgcgcccga
      841 gcagttgttc ggcgccgttg gtgtcgatga tggtgcgcga gtcgatcatc gacgacacgc
      901 ggaaagagat ccgcgacggg aagtttgctt tgatcagacc cgtgatcacg tcaaccgacg
      961 gacgctgcgt cgcgagcacg aggtgaatgc cgacagcgcg cgccatctgc gcgagacgcg
     1021 tgatcgactc ttccacttcg cggcccgaag tcatcatcag gtcggccaac tcgtcgatga
     1081 tgatcacgat gtacggcaac ggcttccacg gttcgccttt gtcgtcgtac tccttgatta
     1141 ggttgcggcg catgatctcg gtgttgtagc cgtcgatgtt gcgcacgccc caacccgcga
     1201 gatcgcgata gcggcgctcc atttccgcca cggcccattt caacgagcgc gcggcgagtt
     1261 tgggatcgac gatgatgggc gccgcgagat gcggaatgtc ttcgtaaaga ccgagctcga
     1321 gacgtttcgg atcgatcagg atgaacttaa cttcgtcagg acgcgcgcga taaagaatcg
     1381 aaacgatcag cgcgttgacg ccgactgact tacccgcgcc ggtggtgccg gcgatcagca
     1441 ggtgcggcat cttcgcgaga tcggcgacgt agttgagccc gtcgatcgtc ttgccgagcg
     1501 cgatcgtcag tttggaaccg gattcctgaa acgcgcgcga ctcgatcact tcgcgcaaga
     1561 agatcgtttc gcggcgcggg tttggcactt caatgccgac gtgcggcttg cccggcatcc
     1621 gatcgatacg aatcgactcc gctttcagcg cgagacacag atcgtcgacg agcgatacga
     1681 cgcgcgaata cttcacgccg ggatcgggtt tgaactcgta ggtcgtgacg accggtccgg
     1741 gacagatgtg tttgatctgt ccggtgacgt tgaactcttt acacttctcg gcgagacgtg
     1801 ttgcgagact gagcagttcg gcgtcggctt gttcgctgtg tggtggcgct tcgttcagga
     1861 actggagcgt cggcagcgcg tagtcgttgt aatcgacttt gcgcgtcgcg tcgaccggga
     1921 gtttgctggg tatttcttcg gttttgacgc gcagcacaga cgcgcccttg accatctctt
     1981 cgacctcttc agcttcgtcc gtgtcgccgc tggtgatgat ggcgcgtttg ctcgcgcgac
     2041 cggtgacgat cggcactgga accgaagctg cgcccgcggc ggctgtcgcg gccagcgatg
     2101 cttgtggttc gctggtcttt gcggtctccg cgcgcagcac tttcaccggt tcaggcgcag
     2161 gcggctcttt catgaagtct gcgacgcgtt ccgcgggcgt gagattcagt gtttgcttca
     2221 gtgtgctgcg agcggcttcc tgttcggctt tgagcgcagc ttttgtttcg cgtcgcttct
     2281 gtgcgagatc gcggcgctcc tgtcgccatg ttgcgaagcg ttcgggaatc ttgccgatga
     2341 aggcgaagcg cgaactgatc gcgttgacga tgatttcgta gagacgaacg aacgagaagt
     2401 tggttgcgag cagcaggccg gtggcggcga tcgcgacgag cagtacggtt gcgccgacgt
     2461 tactcaaacc gctggcgatg c
//
LOCUS       DASWTX010000895         2197 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_385757, whole genome shotgun sequence.
ACCESSION   DASWTX010000895 DASWTX010000000
VERSION     DASWTX010000895.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2197
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_385757"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..832
                     /gene="murB"
                     /locus_tag="VGD38_13495"
     CDS             <1..832
                     /gene="murB"
                     /locus_tag="VGD38_13495"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: protein motif:HMM:TIGR00179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEY0729085.1"
                     /translation="WVISPDTEEQAAAIVHELDQAGIGWRPLGSGSNVLADDRDHHYV
                     VLSLSNMKGEVLIDGELVSVSAGYSLPRLCIDVARAGLAGIEGLGGIPGTVGGALWMN
                     AGAFGHEIGTVTETVRVAREGKVVEIPGSSIQWNYRHTSFAEGELLLGATLRLTPDDP
                     DQIKARMDDVKSRRLATQPHGARSAGCFFKNPPASTIGTGKIIDEMGMKGQRRGSAIV
                     SPVHANFIVTEGEDARAEDALALAEEIRERVRREQGIELEYEVELWRANPESGFEGKE
                     "
     gene            838..1725
                     /locus_tag="VGD38_13500"
     CDS             838..1725
                     /locus_tag="VGD38_13500"
                     /inference="COORDINATES: protein motif:HMM:NF015739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsQ-type POTRA domain-containing protein"
                     /protein_id="HEY0729086.1"
                     /translation="MREQVIPQKVGNRTGLGKSRSGVGQRPAKRAPAESIGARLRSLL
                     GYVPTALRIALIAIVCLLVVVVYRAAASASFFQIKKVETKGAMRASVQDIQAMVRRDV
                     GATGVWRADLQAISQHLESLPWVRNAIVTRVLPDGIRVRITERQPRAVVRASSGRFIW
                     VDDDAVYLGEMASTDQMPPFFLRGWNEEQNGQAENRARVAKFLELQKEWEAQGLSERV
                     SEVNVMDLRDVRVQLAGDDSQIEVRLGSQEQGTRLQKALTVLDAQRQTARGPLISYID
                     LSQGKRAVVGLVNGERRNE"
     gene            1743..>2197
                     /locus_tag="VGD38_13505"
     CDS             1743..>2197
                     /locus_tag="VGD38_13505"
                     /inference="COORDINATES: protein motif:HMM:NF014541.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEY0729087.1"
                     /translation="MAKRTQHTIGLDIGTSKVTCIAGEPGEGGLLEIVGIGEADARGL
                     RKGVIVNPDAAVDAIKKAVEEAERMSGLEAEEVTINLAGSHILGFNGQAIVAVSGRDR
                     EIVAEDVRRAIDSACAIQLPAGREIVDRLPQEFIVDDQDGINDPVGMIGA"
BASE COUNT          454 a          622 c          734 g          387 t
ORIGIN      
        1 ttgggtcatc tcgccggaca ctgaagaaca agccgccgcg atcgttcacg agttggacca
       61 ggcgggtatc ggttggcgtc cactcggctc cggcagcaac gtgctcgccg acgatcgcga
      121 tcatcattac gtggtgctga gcttgagcaa tatgaaaggc gaagtgctga tcgacggcga
      181 gctcgtctcc gtgagcgcgg gttattcgtt accgcgtctg tgcatcgacg ttgcgcgcgc
      241 cggtctcgca ggtattgaag gactcggcgg cattccggga actgtcggcg gcgcgctttg
      301 gatgaacgcc ggcgcttttg gtcacgagat cgggaccgtc actgaaactg tgcgtgtcgc
      361 gcgtgaagga aaagtggttg agatccccgg cagcagcatt caatggaact accgccacac
      421 gtcgttcgcg gaaggtgaac tgttactcgg cgcgacgctc aggctcacgc ccgacgatcc
      481 ggaccaaatc aaggcgcgca tggacgacgt gaagagccgc cggctcgcga cacaaccaca
      541 cggcgcgcgt tccgctggtt gtttcttcaa gaacccgccg gcaagcacga tcggcaccgg
      601 caagatcatc gacgagatgg gaatgaaagg acaacgccgc ggcagcgcga tcgtttcgcc
      661 ggtgcacgca aacttcatcg tcaccgaagg cgaagacgcg cgcgctgaag atgcgctcgc
      721 gttggccgaa gagatccgcg agcgagtccg gcgcgagcag gggattgaac tcgagtacga
      781 ggttgagttg tggcgcgcca atcccgagtc cggatttgaa ggaaaggagt agcagcgttg
      841 agagagcaag tcattccaca aaaagttggc aaccgcacgg gcctcggcaa gtcgcgttcg
      901 ggcgtgggcc aacgtccggc caaacgtgct ccggctgagt cgatcggcgc gcggctgcga
      961 tcgctccttg gctacgtccc gactgctttg cggatcgcgc tgatcgcgat cgtctgtctg
     1021 ctcgtggtgg tcgtttatcg cgcggccgcg tctgccagtt tctttcagat caagaaggtc
     1081 gagacgaagg gcgcgatgcg cgcgtcggtt caggatattc aagcgatggt gcggcgcgat
     1141 gttggcgcga ccggtgtgtg gcgcgcggat ctgcaggcga tcagccagca tctcgagagt
     1201 ctgccgtggg ttcgcaacgc gatcgtcacg cgcgtgttgc cggacggaat ccgcgtgcgc
     1261 atcacggagc gccagccgcg cgccgttgtg cgcgcttcgt caggccggtt catttgggtc
     1321 gacgacgacg cggtttatct cggcgagatg gcgtcgacgg atcagatgcc gccgttcttc
     1381 ctgcgcggtt ggaacgaaga gcaaaacgga caagccgaga accgcgcgcg cgtcgcgaag
     1441 tttctcgaac tgcaaaagga gtgggaagca cagggtcttt ccgaacgcgt gagtgaagtg
     1501 aacgtgatgg acctgcgcga cgtgcgcgtg cagctcgccg gcgacgattc gcagatcgaa
     1561 gtgcggctcg gctcgcagga gcagggcacg cgtctgcaaa aggcgctgac cgtgctcgac
     1621 gcgcaacggc aaaccgcgcg tggtccactg atcagttaca tcgacctaag ccagggaaag
     1681 agagcagtgg ttgggttagt aaacggtgaa cgcaggaacg aataatccag gagaaacccc
     1741 cgatggccaa gcgcacgcaa cacacaatcg gtctcgacat tgggaccagc aaggtcacgt
     1801 gtattgcggg cgagccaggc gaaggcgggt tgcttgaaat cgtcggcatc ggcgaagcgg
     1861 acgctcgcgg tttacgcaaa ggcgtgatcg tgaatcccga cgccgccgtc gacgcgatca
     1921 agaaagcagt cgaagaagcg gaacgcatga gtggtttgga agcagaagaa gtgacgatca
     1981 atctcgccgg ttcacacata ctcggcttca acggccaggc catcgtcgct gtctccggcc
     2041 gcgatcgcga gatcgtcgcc gaagacgtac gccgcgcgat cgattcagcg tgtgcgattc
     2101 aacttcccgc gggccgcgag atcgtcgatc gactgccgca ggaattcatc gtcgacgatc
     2161 aggacggcat caacgatccc gtcggaatga tcggggc
//
LOCUS       DASWTX010000896         4818 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_342618, whole genome shotgun sequence.
ACCESSION   DASWTX010000896 DASWTX010000000
VERSION     DASWTX010000896.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4818)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4818)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4818
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342618"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..512
                     /locus_tag="VGD38_13510"
     CDS             <1..512
                     /locus_tag="VGD38_13510"
                     /inference="COORDINATES: protein motif:HMM:NF013713.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729088.1"
                     /translation="AFADKRVQVINDDAFIWVEQTTDAPYDAAIVDFPDPNTFSLGKL
                     YTTRFYRLLRSRLTPSAAVSVQSTSPMFARNSYWCIIRTLEAAGFSVKPYYTAVPSFG
                     LWGFALARSSPFEIPTKPPDGLRFLDEQTLAAMFQLSKDIEPVPVEINRLDNQALVRY
                     YEGEWKRFE"
     gene            complement(623..745)
                     /locus_tag="VGD38_13515"
     CDS             complement(623..745)
                     /locus_tag="VGD38_13515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729089.1"
                     /translation="MPRCSEASDAATDDNDRNVGPRVSGYFDADTVAKLMTEDV"
     gene            704..2134
                     /locus_tag="VGD38_13520"
     CDS             704..2134
                     /locus_tag="VGD38_13520"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY0729090.1"
                     /translation="MVGGGVAGLTAAWHLQKSGFNDFALMELEKAPGGTSRSGSSGSI
                     SFPWGAHYIPAPMKENTALISLLNEMGVIEGKDAEGEPVIAEQFLCRDPEERIFYKGR
                     WYEGLYLHAGASADDDQQMAKFNAEVNRWVLWRDAKGRRAFTLPVSACSDDAEVTALD
                     RISMGEWMNQRGLVSPRLRWWVNYACRDDYGMTLDQTSAWAGLFYFCARVLKPGVESQ
                     SLITWPEGNGRLVNHLYNKAQSHIHLDRAVFDVNPLSDRIEILTLDRDGRTPRGYRTR
                     FVIFAAPQFMARYVIRPYRENPPPHIAEFQFGSWMVANLTLKDRPQLGGRDFPLAWDN
                     VLYESESLGYVVATHQRGIDRGPTVFTYYYPLCDDNARIARTRLLETDWRGWADVTLT
                     DLSRAHPDIRNLVERLDVMRWGHAMIRPRTGFMWGAARRAGAKPFRSIHFAHSELSGV
                     ALFEEAFDHGLRAADEVLRSIRVSRA"
     gene            complement(2077..3003)
                     /locus_tag="VGD38_13525"
     CDS             complement(2077..3003)
                     /locus_tag="VGD38_13525"
                     /EC_number="4.1.3.3"
                     /EC_number="4.2.1.41"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF012904.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009436 - glyoxylate catabolic process
                     [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HEY0729091.1"
                     /translation="MKMTWRGVMPATTTAFDESLNIDHAFVARHAQWLVDSRCTAIIA
                     PGSLGESATLSFDEKVALCDTLIAAVGERVPVVAAIASLSTAEAVALAKRAEEAGCSG
                     LMVLPPYVYRSDWREMKAHIEAVFRATGLSCMLYNNPVAYGTDFLPEQIAELAAEHAN
                     LAAVKESSTDVRRITWIKELVGDRLDISVGVDDAIVEGIAAGAVGWVAGLVNALPKES
                     VALFNYAMDGEHEKARELYRWFLPLLRLDTVPKFVQLIKLVQQEVGMGSARVRPPRLE
                     LIDAELNEAKRVIHHALETRIERSTSSAARNP"
     gene            complement(3000..4265)
                     /locus_tag="VGD38_13530"
     CDS             complement(3000..4265)
                     /locus_tag="VGD38_13530"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding oxidoreductase"
                     /protein_id="HEY0729092.1"
                     /translation="MSSGAGVLIVGAGPAGLAAAYRAASAGLRVAVVDDNPQAGGQIW
                     RGEQSKPSSREAREWLERIRSINIRFISGARIFQQTQPGELLAETAAGVTELNYTDLI
                     LATGARERFLPFPGWTLPNVMGAGGLQALVKTGLSVDGKKVVVAGSGPLLLAVAGYLR
                     AGGADVLLIAEQARASRLARFGLNLFGAGKSTQAFELKRRLKSVKYLHGCWPVAAHGE
                     EKLTSVALSRGGKTWRVECDYLACGFHLVPNLELAELLECRVENGAVRVDEFQQTSVP
                     HVYAAGEATGIGGLELSLVEGEIAGFAVAGKRDEARRLFAVREKQQGFARILNETFAL
                     RNELRDLVKSETLVCRCEDVSFERLKAHESWRAAKLQTRCGMGPCQGRVCGPAVEFLF
                     GWRVESVRPPIFPVRVESLVTEEHRGTQR"
     gene            complement(4258..4506)
                     /locus_tag="VGD38_13535"
     CDS             complement(4258..4506)
                     /locus_tag="VGD38_13535"
                     /inference="COORDINATES: protein motif:HMM:NF024900.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEY0729093.1"
                     /translation="MPELITLKVNDAAVSVPAGSMVAAAVLEAGVSSFRRSVTGEARG
                     PLCGMGICFECRVTVNGVAHVRSCQTLCENGMDVRTDE"
     gene            complement(4499..>4818)
                     /locus_tag="VGD38_13540"
     CDS             complement(4499..>4818)
                     /locus_tag="VGD38_13540"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEY0729094.1"
                     /translation="SIVTRMLARAMEYLPSLGKLSALRTWTGFRAATPDKLPLIGPAT
                     SAVSTSVHARLYLATGHEGLGITASLATAKLLVDQILNRTPAIPIPPYLPSRMAPETT
                     ARA"
BASE COUNT          996 a         1620 c         1245 g          957 t
ORIGIN      
        1 aagctttcgc cgacaagcgc gtgcaagtga ttaacgacga cgcttttatt tgggtagagc
       61 agacaacaga cgcgccgtac gatgccgcaa ttgttgattt ccccgaccct aacacattct
      121 cgctcggcaa actttacacc acgcgcttct atcgtttgtt gcgaagtcgc ttaacgccaa
      181 gcgccgccgt gagcgtgcaa tccacttccc cgatgttcgc gcgcaactct tactggtgca
      241 tcattcgcac gctcgaagcc gcgggcttct cggttaagcc ttactacact gcggtgccga
      301 gttttggtct ttggggcttc gcactcgcac gttcgtctcc attcgaaatt cccaccaagc
      361 cgccggacgg tttgcgcttc ctcgacgagc agacactcgc ggcgatgttt caactctcga
      421 aagacatcga gcctgtgccg gtggagatca accggttgga taaccaggca ttggttcgtt
      481 attacgaagg tgaatggaag cgatttgagt gaattttagc cgtcgcgaaa tccttgccgc
      541 tttccttggc cttcccgtcg cgctcgctgc ctgcagacgc tccgacaatc ctcctttacc
      601 ggctggcgag atcgtcggcc agtcagacgt cttcggtcat cagcttcgcg acggtgtccg
      661 cgtcgaagta cccgctgacg cgtggaccga cattcctgtc gttatcgtcg gtggcggcgt
      721 cgctggcctc actgcagcgt ggcacttaca aaaatccggt tttaacgatt ttgctttaat
      781 ggaactcgaa aaggcgccgg gcggcacgtc tcgttcgggt tccagtggct cgatctcctt
      841 cccctggggc gctcactaca tccccgcacc gatgaaagaa aacaccgcgc ttatttcgct
      901 tctcaacgaa atgggtgtga tcgagggcaa agacgcagaa ggcgaacccg tgatcgccga
      961 acagttcctc tgccgcgatc cggaggaaag gattttttac aaaggccgct ggtacgaagg
     1021 actctatctg cacgcgggcg cgagcgccga cgacgaccag cagatggcga agttcaacgc
     1081 cgaggtcaat cgctgggtgc tgtggcgcga cgcgaaaggc cggcgcgcgt ttacgctgcc
     1141 ggtgtcggcg tgttcagacg acgccgaggt caccgcgctc gatcgcattt caatgggcga
     1201 gtggatgaac cagcgcgggc tcgtgagccc gcggctgcgt tggtgggtga actacgcatg
     1261 tcgcgacgac tacggcatga cgctcgatca gacgagcgcc tgggccggtc tcttttattt
     1321 ctgcgcgcgc gtgttgaagc ccggagttga gtcgcagtcg ctgatcacgt ggcctgaagg
     1381 aaacggacgg ctggtgaatc atctttacaa caaagcgcag tcgcacatcc atctcgaccg
     1441 cgcagttttc gacgtcaatc cgctttcaga tcggatcgaa atccttaccc tcgatcgtga
     1501 cggccgaacg ccgcgcgggt atcgaacccg cttcgtcatc ttcgccgcgc cgcagttcat
     1561 ggcccgctac gtaattcgtc cttaccgcga gaatccgccg ccacacatcg ccgagtttca
     1621 attcggctcg tggatggtcg caaacctgac gttgaaagat cgtccgcaac tgggcgggcg
     1681 tgactttcca ctcgcgtggg acaacgtcct ttacgaaagc gaatcgctcg gttacgtcgt
     1741 cgccacgcac cagcgcggca tcgatcgtgg tccaaccgtg ttcacttact actacccgct
     1801 ctgcgacgac aacgcacgca tcgcacgcac gcgtctgctc gaaaccgatt ggcgcggctg
     1861 ggccgacgtg acgctcaccg atctctctcg cgctcaccct gacattcgca acctcgtcga
     1921 acgtctcgac gtgatgcgtt ggggccacgc gatgatccgc ccgcgcaccg gcttcatgtg
     1981 gggcgccgca cgccgcgccg gcgcgaaacc gtttcgttca attcacttcg cacactcgga
     2041 actgagcggc gtcgcactgt ttgaagaagc tttcgatcac ggattacgcg ccgcggatga
     2101 ggtgctccgt tcaatccgtg tttcaagggc gtgatgaata acccgcttcg cttcgttaag
     2161 ctctgcgtca atcaattcca aacggggcgg ccgcacgcgc gcagatccca tccccacctc
     2221 ctgctggacc agcttgatca actgcacgaa cttcgggacc gtgtccaacc gcagtaacgg
     2281 cagaaaccaa cgataaagct ctcgtgcttt ttcgtgttcg ccgtccatcg cgtaattgaa
     2341 gagcgcaacc gactctttcg gcagcgcgtt caccagaccc gcgacccacc caaccgcacc
     2401 ggccgcgatg ccttcaacga tcgcgtcatc gacgccgact gaaatgtcca accgatcgcc
     2461 aaccaactcc ttgatccacg tgatgcggcg cacgtcagtg ctcgactctt tcactgcagc
     2521 aagattggcg tgctccgccg ctagctcggc aatctgttcc ggcaaaaaat cggtgccgta
     2581 cgcgacggga ttgttgtaga gcatgcacga cagacccgtc gcgcgaaaca cagcttcgat
     2641 gtgcgccttc atctcgcgcc agtcgctgcg atagacgtac ggcggcaaca ccatcagccc
     2701 gctacaaccc gcctcttccg cacgcttcgc aagcgcgacc gcttcagcgg tgctcaacga
     2761 agcaatcgcc gcaacgaccg gcacgcgctc cccaaccgct gcaatcaacg tgtcgcacag
     2821 cgcaaccttc tcatcaaaac tcaacgtcgc actctcgccg agcgaaccgg gcgcgatgat
     2881 ggccgtgcac ctgctatcga ccagccactg cgcgtgcctt gccacaaacg catggtcgat
     2941 attcaggctc tcatcaaacg ccgtcgtcgt cgccggcatc acaccgcgcc aagtcatctt
     3001 catctctgtg ttcctctgtg ttcctctgtg actaaactct caacccgcac cggaaagatc
     3061 ggcggcctca cggactcaac acgccacccg aacaaaaact ccaccgctgg accacaaaca
     3121 cgtccctgac acggtcccat cccacaacgc gtctgcaact tcgcggcacg ccacgactca
     3181 tgcgctttca gccgttcaaa actaacatcc tcacatcgac acacaagcgt ctccgattta
     3241 accaaatctc ttagctcgtt tcgaagtgcg aacgtttcat tcaaaatccg cgcaaatccc
     3301 tgctgctttt cgcgtacggc aaacaacctc cgcgcttcat ctcgtttgcc cgccaccgcg
     3361 aatcccgcga tctcaccttc aaccaacgac agctcaagcc cgccaatgcc cgtcgcttcc
     3421 cccgccgcgt aaacgtgcgg cacgctcgtc tgctgaaact catcaacacg caccgcgccg
     3481 ttttcaaccc tgcactcaag caactcagcg agttcaagat tcggcacgag atgaaacccg
     3541 cacgcaagat agtcgcattc aacgcgccac gtcttgccac cccgagacaa cgccacgctc
     3601 gtgagcttct cttcaccgtg cgccgccaca ggccagcagc cgtgcagata cttcacgctt
     3661 ttgagccgcc gtttcaactc aaacgcctgc gttgacttgc ctgcgccaaa caaattgaga
     3721 ccaaaacgcg ccaaccgact cgcgcgcgcc tgttccgcga tcaacaacac atccgcgcca
     3781 cctgcgcgca aataaccggc gaccgcgagc aacaatggac cactcccggc aacgacgact
     3841 tttttcccat caaccgagag ccccgtctta accagcgcct gcaaaccacc ggcgcccatc
     3901 acattcggca gcgtccaacc cggaaacggc agaaaccttt cacgcgcgcc ggtcgcgaga
     3961 atcagatccg tgtaattcag ttcggtaacg cccgcagccg tttcagccag cagttctccc
     4021 ggttgcgtct gttgaaagat cctggcgcct gaaatgaaac ggatatttat ggatcgaatc
     4081 cgttccaacc actctcgcgc ctctcttgag cttggtttac tctgctcgcc gcgccagatc
     4141 tgtccgcccg cctgcggatt gtcgtccacg accgcaacac gcaaacccgc gcttgccgca
     4201 cgatacgctg cagcaagtcc ggccggtccg gcacccacga tcaagacgcc ggcgccgcta
     4261 ctcatccgtg cgcacgtcca ttccgttttc gcaaagcgtc tgacaactgc gcacgtgagc
     4321 cacgccattg accgtcacgc gacattcaaa acagatcccc atgccacaca acggcccgcg
     4381 cgcttcaccc gtcaccgagc gccgaaatga actaacaccg gcctccagca cagccgccgc
     4441 caccatgctg cccgcgggca cgctgaccgc tgcgtcattc actttcagag taatgagttc
     4501 aggcacgcgc agtagtctcc ggcgccattc gcgacggtaa gtacggtggg attggaatcg
     4561 caggcgtgcg gttcaggatc tgatccacaa gcagcttggc cgtcgcgagc gaggcggtga
     4621 tgccgagacc ttcgtggccc gttgcgagat acagccgtgc gtgtacggag gtggatacag
     4681 cgcttgtcgc gggtccaatc agcggaagct tgtcgggcgt cgcggcgcga aagccggtcc
     4741 atgttcgcaa tgcggaaagc ttgccgagcg aaggcaagta ttccattgcg cgcgcgagca
     4801 tgcgcgtcac gatcgatt
//
LOCUS       DASWTX010000897         1737 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_408188, whole genome shotgun sequence.
ACCESSION   DASWTX010000897 DASWTX010000000
VERSION     DASWTX010000897.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1737
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_408188"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..837)
                     /locus_tag="VGD38_13545"
     CDS             complement(<1..837)
                     /locus_tag="VGD38_13545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729095.1"
                     /translation="MIDFSKIRGETVEAQRSYFEQLVCHLARLDKSAGGEFRRIEGSG
                     GDGGVEALRILSTNRKIGYQAKFYPSAKSINWKNLDDSVKTALAQHPELERYIIALPC
                     DFTGTRAARNGSTDGIWGKWDTQVTQWRSWAKASHIEVEFEPWTAFELEGSLLQSDAQ
                     HLIHFFFDRLVFTPDWIEKQLNRTLVDLQARYSPHEHVDTEALKPFDVIHRRERVRND
                     LKSIFKMARLSNPRASASLVKSVTAPDTMIIETETAQSYFLSFEEAVDWKLPKPWPVC
                     HWL"
     gene            1109..>1737
                     /locus_tag="VGD38_13550"
     CDS             1109..>1737
                     /locus_tag="VGD38_13550"
                     /inference="COORDINATES: protein motif:HMM:NF015155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HEY0729096.1"
                     /translation="MRLDGRSLIPSDLPQFAEGDQAASRFELRDLVLIGVGNEEGVYT
                     PETLRRVARLSEGLSRVEGVVAGSVLSISTVPRITKVDDEVDTSPLFRPEDELDTERI
                     RQLRRDVGRRGYDRGVLVSADGKGTAIIAKVEPGADRYRLLEATRALIASESSGKDKI
                     YLSGSALAQAVLGQATARDLARLIPAVIAVLGVMLFLSFRHPVPALLSLT"
BASE COUNT          354 a          459 c          507 g          417 t
ORIGIN      
        1 tagccaatgg cacaccggcc acggttttgg aagtttccag tcaaccgctt cctcgaagga
       61 cagaaaatag ctttgggcag tctccgtctc tatgatcatt gtgtcggggg ctgtgacgct
      121 cttcaccagt gacgcactgg cgcgcgggtt ggataggcgg gccattttga aaatgctttt
      181 gagatcgtta cgaacccttt cgcgacgatg aatcacatcg aacggtttca gcgcttcagt
      241 gtcgacgtgc tcatgagggc tatatctagc ctggagatca acaagtgttc ggttgagttg
      301 tttctcgatc cagtccggag taaagactag ccggtcaaag aaaaagtgga tcaaatgttg
      361 ggcatcggat tggaggagac ttccttctaa ttcaaacgcc gtccacggtt caaactcaac
      421 ctctatgtga gaagctttcg cccaagacct ccactgagtg acttgggtgt cccacttacc
      481 ccaaattcca tccgtagagc cgttgcgcgc tgctcgtgtt ccagtgaagt cgcatggcaa
      541 tgcgatgata tagcgctcga gttcggggtg ttgagccaac gccgtcttca ctgagtcgtc
      601 caaatttttc cagttgattg atttcgcaga cggatagaat tttgcctggt agccgatttt
      661 ccggttggtc gacagaattc ggagcgcctc tactccgcca tcgccgccag aaccctcgat
      721 acgacgaaat tctccgccag cactcttgtc gaggcgagca aggtggcaaa cgagttgctc
      781 aaaataactt cgttgagctt cgactgtttc tcctcgtatt ttagaaaaat ctatcatagt
      841 gactgtctat ggctggtact gcgggaggaa tcaaataaat ccacggcact ttagcaagaa
      901 tgaataagaa aagtcccttg ttttccgcta cacgatagct ggccccgccg cgtcaagcac
      961 cgcggtgcag ggcgtatccg aacaataggt ctgttccgtg ttcctgataa ctcacttgct
     1021 gaggttttcg gttagacacc cgcgtgtcgt gattgcggct gtgggggcta ttaccgtttg
     1081 tgcccttgtc ttcatcccac gaatccaatt gcgcctcgat gggcgctcgt tgattccgtc
     1141 agatctcccg cagttcgccg aaggcgacca ggcggcgtcg cggtttgagt tgcgcgacct
     1201 ggtgctgatc ggtgtcggca atgaggaggg tgtgtacacg cccgagacac tgagacgcgt
     1261 tgcgcgtttg agtgaggggc tttctagagt cgagggtgtt gtcgcagggt cggtcctcag
     1321 catctcgacg gtaccgcgta tcacgaaggt cgacgatgag gtcgacacga gtccactctt
     1381 ccggcccgag gacgaattag acacagagag aatccggcag ttgcgccgcg acgtgggccg
     1441 gcgcggctat gacaggggtg tgctggtctc agcagacggg aaggggacgg ccatcatcgc
     1501 gaaggtcgaa ccgggcgcgg atcggtatcg gctgcttgaa gcgacgcgag ctctgatcgc
     1561 gagcgagtca tccggcaaag acaagatcta cttgagcgga tcggcgttgg cgcaagccgt
     1621 tctcggccag gcgacggcgc gcgacctcgc gcgtttgata ccggccgtga tcgccgtgct
     1681 cggcgtgatg ctgtttctgt cgtttcgtca cccggtgccc gcgcttttgt cgctcac
//
LOCUS       DASWTX010000898         1502 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_342649, whole genome shotgun sequence.
ACCESSION   DASWTX010000898 DASWTX010000000
VERSION     DASWTX010000898.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1502
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342649"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1502
                     /locus_tag="VGD38_13555"
     CDS             <1..>1502
                     /locus_tag="VGD38_13555"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0729097.1"
                     /translation="FSRRVEGNVALFSYPEYLNHRDRVAGFSGLIASSDVGLYLGSDN
                     VERINGLLVTDNYFSLLGGASALGRTFFDKECQAPLQCPVAVISHDFWQRRFGSDQNV
                     IGSSLTLNRQTFTIIGVAARDFHGAEMSVPDVWIPVTMEPAVKPDIKLLPEENASWLS
                     VYGRLKDGVSIQQVQAEMQLVAAQMDQNYPGRKSTVNVMPGSFLNSPEARSEGMPIAI
                     LVIAAVGLVLLIACANVSNLMLARAAARRKEIAVRLALGASRWRLIRLLLTESLLLAL
                     LGGVVGLLFAFWVPPIVLSAIPEAGLDINLKPNTTIFAYTFLISLLTGVVFGLAPAIE
                     STKSNLTTALRTTGNRPRVTRSYLRSLLVIGQVAVSLVLLIGAGVLVRGLQKAQSADL
                     GFDQKNLFVLSLDRPTQTQDEARLPSLYAQLAERLKVLPGVESVSLAGVVPFAGVRES
                     AIEIEGQTTSTGSTLSSGSNVVSPDYFKTLGIPILRGRPFTEADAHSGTS"
BASE COUNT          299 a          434 c          428 g          341 t
ORIGIN      
        1 agttttctcg tcgcgttgaa ggcaacgtcg cgctgttttc ttatcccgaa tatctgaacc
       61 atcgcgaccg agtcgccggc ttctccggtc tcatcgcttc gtccgacgtc ggcctgtact
      121 tgggtagtga caacgtcgaa agaatcaacg ggctattggt caccgacaat tacttctcac
      181 ttctcggtgg cgccagcgct ctcggccgca ctttcttcga caaggaatgt caggcgccgc
      241 ttcaatgccc ggttgctgtg atcagtcacg acttctggca gcgaagattc ggctccgatc
      301 aaaatgtcat tggctcttcc ctcacgctca accggcagac cttcacgatt atcggcgttg
      361 cagcacgcga ttttcacggc gccgagatga gcgttcccga cgtgtggatt ccggtaacga
      421 tggaacctgc cgtgaagcct gacatcaaac tgctgccgga agaaaacgcc agttggttga
      481 gtgtgtacgg caggttgaaa gacggagttt cgatccaaca ggtccaggcg gagatgcagc
      541 tcgtcgccgc gcagatggac cagaactatc ccgggcgcaa atcgaccgtc aacgtcatgc
      601 cgggatcgtt tctcaattcg ccggaagctc gcagcgaggg aatgccgatc gcgatcctcg
      661 tgatcgcggc agttggcctg gtgcttctga tcgcgtgcgc gaacgtatcg aacctgatgc
      721 tcgcgcgcgc tgcggcgagg cgcaaagaaa tcgccgtacg tctagcgctc ggcgcgagcc
      781 gctggcgatt gatcaggctc ttactgaccg aaagtctgtt gctcgcgctg ctcggtggcg
      841 ttgtcggttt actgttcgca ttctgggtgc cgccaatcgt gttgtcggcg attccggagg
      901 ctggtctcga catcaacctt aaaccgaata caacaatctt cgcatacacg tttttgattt
      961 ctctgctcac gggcgtcgtg tttggactgg cgcccgcaat cgaatctaca aagtcgaacc
     1021 tgacaacagc gctgagaaca accggaaaca gaccgcgcgt cacgcgctca tacctgcgga
     1081 gtctgctggt gattggccag gtcgcggttt cgctcgtgct gctgatcggc gccggtgttt
     1141 tggtgcgcgg attacagaag gcccaatccg cggacctcgg attcgatcag aagaacttgt
     1201 tcgtcttgtc actcgatcga ccgacacaga ctcaagacga agcgcgttta ccgagtctct
     1261 atgcacagct cgccgagcgt ctgaaggttt tgccgggagt agagtcggtg agtcttgcgg
     1321 gagtcgttcc ttttgcgggc gtgcgtgagt cggccatcga aatcgaaggc cagaccacgt
     1381 ccaccggatc tacattgagc tcgggctcaa acgtagtttc acctgactac ttcaaaacgc
     1441 tcggaattcc catactccgg ggccgcccgt tcaccgaagc agatgcgcat agcggcacat
     1501 cg
//
LOCUS       DASWTX010000899         2551 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_385776, whole genome shotgun sequence.
ACCESSION   DASWTX010000899 DASWTX010000000
VERSION     DASWTX010000899.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2551
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_385776"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(26..1915)
                     /locus_tag="VGD38_13560"
     CDS             complement(26..1915)
                     /locus_tag="VGD38_13560"
                     /inference="COORDINATES: protein motif:HMM:NF012618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HEY0729098.1"
                     /translation="MSADGCLAAVARSSGGAAKRYGRVDLWDTRSGELLRTITGFDGP
                     IWSMKFSKDGRTLITVSTEYRDSKIQASVRSRQEKVFAELKWWNVETGEFIKKLPLAE
                     EGITSVEATWSPDGNSFALIERYVRWQLTQLSPSGAFGQQVVMPSYENVEEVDLKLLD
                     AETAERRVKFQDVERTFYGRVAWLFGRLDDPLFSPDGKTMAAIFGEEVIIWSLATGKK
                     VRTLKKLNGFPAAIAFSPDSRLLAVAAVKGPIDGGDSEVSVWDLETGKPVNKLKGKND
                     RVACIQFVVRGQALLMGTLEYRPGIAMGTVKLWDLRDNRVKSANIIEGKAVSSMTLIH
                     DQTALVVQSGDEVEVRDARTWRVMHTFESSEEDKTEAMRRSRFILTANRALAVAFSRD
                     GTTVSAEIPGEGIRRWDARTGGVRAVIPRAKSADDAVLAFSSDGDFVVETTADGVRIR
                     DLLNGNTKQVPVETEESISALTLSPDNRTLITADESGMVHLWDAETGQSKKAIQVGQQ
                     VTAVAIDATGQLLAAARADRSIVLWDLKTGAVRGEFRKHDNVVNALAFSPDGRTLASG
                     GDDRTAILWDLGSGKSKRTLKGHDLTVTSLAFSPDGLTLASGSGNASVVLWNVTTGKL
                     DRILR"
     gene            complement(2168..>2551)
                     /locus_tag="VGD38_13565"
     CDS             complement(2168..>2551)
                     /locus_tag="VGD38_13565"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY0729099.1"
                     /translation="RVFPSVEAGTCRVLIARNERGRIVGTVQLDLAMPPNQPHRGEIK
                     KLLVHPLERRGGIARALMMCIEEEARAAQRTLLTLDTASPAAEQLYSSLGYVRVGVIP
                     RFSNHPETRELEGTTVMYKELTATS"
BASE COUNT          519 a          795 c          695 g          542 t
ORIGIN      
        1 caaggctgcg tgcagaagcg gcggctcaac gcaggattcg atcgagcttg ccggtggtga
       61 cgttccatag gaccacggag gcgttgccac tgccgctcgc gagcgtcagc ccatcgggtg
      121 agaaagccag tgaggttacg gtcaggtcgt ggcctttcaa agtgcgcttt gatttacctg
      181 aaccaaggtc ccagagaatc gccgtgcggt cgtcgccgcc gctggcgaga gtacggccat
      241 ccggtgagaa ggcgagcgcg ttgacgacgt tgtcgtgttt cctgaactcg ccacgcacag
      301 cgcccgtttt caggtcccac aaaacgatcg aacgatccgc acgcgcagcc gcaagcaact
      361 gacccgtcgc atcgatcgcg accgcagtga cttgttgccc aacctggatc gcctttttac
      421 tctgcccggt ctcggcatcc cagaggtgga ccatccccga ctcatccgca gttattagcg
      481 tgcgattgtc cggcgagagt gtgagtgcgg agatcgactc ctcagtttca acgggaacct
      541 gtttcgtgtt tccgttaagc aaatccctga tccgcacgcc gtcagccgtc gtctccacca
      601 cgaagtcgcc gtcagacgag aacgcaagca ccgcatcatc cgcactcttc gcgcgcggaa
      661 tcacagccct cacaccgccg gtgcgcgcat cccaacgcct gattccctca cccggaatct
      721 ctgctgaaac cgtcgtgccg tcacgcgaaa acgcgactgc cagagcacgg ttcgcggtga
      781 gtatgaaacg gctgcggcgc atcgcttcag tcttatcttc ttcggacgac tcaaacgtgt
      841 gcatgacgcg ccacgttctc gcatccctga cttccacttc gtcgcccgat tggaccacca
      901 gcgctgtttg atcgtgaatc agcgtcatcg acgaaacagc tttgccctcg ataatgttcg
      961 cgctcttcac acggttgtcg cgcaggtccc acagcttcac ggtgcccatc gcgataccgg
     1021 gtctgtattc gagagtgccc atcaagagcg cttgtccacg cacaacaaac tgtatacacg
     1081 cgacgcgatc gttcttgccc ttcaacttgt tcacaggctt gccggtctca agatcccaaa
     1141 ccgaaacctc gctatctccg ccgtctattg gtcccttgac ggccgccact gccaaaagtc
     1201 gactgtccgg ggaaaaagcg atcgctgccg gaaagccatt cagcttcttt aacgtgcgca
     1261 ctttcttccc ggtcgcaagg ctccatataa ttacttcctc gccgaatatc gccgccatcg
     1321 tctttccatc aggcgagaaa agcggatcgt ccagccgtcc aaacagccac gcaacacggc
     1381 cgtagaaagt cctctcaaca tcctgaaatt tcacccgacg ctctgcagtc tcggcatcca
     1441 gtaatttcag atcgacttct tcgacatttt cataactcgg catgacgacc tgctgaccga
     1501 acgcgccgga cgggctgagt tgcgtaagct gccacctcac ataacgttca atcagtgcga
     1561 acgaattgcc atccggcgac cacgtcgctt caacactcgt gataccttcc tcggccaacg
     1621 gaagcttctt aatgaactcg cccgtctcga cgttccacca cttcagttcg gcaaagactt
     1681 tctcctgccg gcttctcact gacgcctgaa ttttcgagtc gcgatattca gtgctgacgg
     1741 tgatcagcgt acgtccgtct tttgaaaact tcatcgacca gatcgggccg tcgaaacccg
     1801 tgatcgtgcg cagcagttcg ccggagcgcg tatcccacag gtcaacgcgg ccgtagcgct
     1861 tggcggcgcc gccgctgctg cgcgcgaccg cggccagaca gccgtcggca gacacggcaa
     1921 cattcaccgg gcacgactgg ttccgtctca ataaagtccc ggctggctga gccgttacgg
     1981 tggttacaag gaagaggacg ccgaggaata agcggaaaaa cataggattt gggaatataa
     2041 cctgcgctgt tggcttatcg ctactacccg ggaactgctg aacgcccact atgatgcgcg
     2101 ctcaaacgag aaatagttcc ttcggaaaga atttggggcg ccggcgtctc ccggaagggg
     2161 ttggtgatta agacgtggcg gtcagctctt tgtacatcac cgtggtgcct tcgagttccc
     2221 gcgtctcagg atggttcgag aaacgtggga tgacgccgac gcgcacgtag ccgagcgacg
     2281 agtagagttg ctcggctgcc gggctggcgg tgtcgagtgt cagtaacgtt cgttgtgcgg
     2341 cgcgcgcttc ttcttcgatg cacatcatga gcgcgcgtgc gataccgccg cggcgttcca
     2401 aaggatggac caggagtttt ttgatctcgc cgcggtgtgg ttggtttggt ggcattgcga
     2461 gatcgagttg cacggtgccg acgattcgac cgcgctcgtt acgcgcgatc agcacgcggc
     2521 acgttccggc ttccacggaa ggaaagaccc t
//
LOCUS       DASWTX010000900         1918 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_166570, whole genome shotgun sequence.
ACCESSION   DASWTX010000900 DASWTX010000000
VERSION     DASWTX010000900.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1918)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1918
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166570"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..404
                     /locus_tag="VGD38_13570"
     CDS             <1..404
                     /locus_tag="VGD38_13570"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEY0729100.1"
                     /translation="HISCWIGLDDSTRDNGCVHYVPGSHRWQLLPRAGFANDMDAVLD
                     SLTPSQRAEFKPVPIELKAGECSFHHPLMVHGSYANNTDRPRRAVVLNAFRDGVTSAS
                     DAPLLEGVPPIAAGEKMGGQFFPLLFDPATS"
     gene            550..927
                     /locus_tag="VGD38_13575"
     CDS             550..927
                     /locus_tag="VGD38_13575"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY0729101.1"
                     /translation="MFRDAKAFSSFSVNDLQQAKEFYGQTLGLDVKETAEGLELRNGG
                     QSVFLYPKPNHTPASFTVLNFQVDDIETAVDELEALGVKLEHYDLPDMKTDERGIFRG
                     QPGPQIAWFKDPAGNILSVLVEK"
     gene            complement(978..1190)
                     /locus_tag="VGD38_13580"
     CDS             complement(978..1190)
                     /locus_tag="VGD38_13580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729102.1"
                     /translation="MPNASRNRLNQPPTGQGKKQSPRSGAENKLDKRSEVLQAAGADQ
                     NIGTADDEEAARSTGKTNPKRPKAGR"
     gene            complement(1171..1338)
                     /locus_tag="VGD38_13585"
     CDS             complement(1171..1338)
                     /locus_tag="VGD38_13585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729103.1"
                     /translation="MSDKDRNKKDHQRKDKKNKRMHERENPQTLNARPQQQARDESNL
                     NEVITNAKRKS"
     gene            complement(1355..>1918)
                     /locus_tag="VGD38_13590"
     CDS             complement(1355..>1918)
                     /locus_tag="VGD38_13590"
                     /inference="COORDINATES: protein motif:HMM:NF015430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729104.1"
                     /translation="TVVIPLIREQLTPALSDKVIDALSFGIDTPEHELFDESLKAFHR
                     HDSLTDMEKLERLLNEFRADDLGVAGVPDTLAALSNGQVEEMLIVSTPDKLAYDEEEV
                     KKVLKLYEPDGEPLAAFDPQSVADELVRRANLLSAARVTFIEDDTRLQHIGGVGALLR
                     YRISPENAVPYEDSSATPRSQALTTQA"
BASE COUNT          377 a          533 c          529 g          479 t
ORIGIN      
        1 cccacatctc ctgctggatc ggtctcgacg attcaacgcg cgacaacggt tgcgttcatt
       61 acgttcccgg cagtcatcgc tggcagttgc tgccgcgtgc gggttttgcc aacgacatgg
      121 acgcggtgct cgattcgttg acaccttcac aacgtgcgga gttcaaaccc gtaccgatcg
      181 aactgaaagc cggcgagtgt tcgtttcacc atccgttgat ggtccatggc tcatacgcaa
      241 acaacaccga ccgcccacgc cgcgcagtag tgctcaacgc ttttcgcgat ggtgtgactt
      301 cggcatccga tgcgccgttg ctggaaggcg tgccgccgat tgcggcaggc gagaagatgg
      361 gcggacagtt ctttccactg ctgttcgatc ctgctacgtc ctaattcctc atcacggaaa
      421 cacaacagtg aagtcggaga actgcgacac gaccgtaaga actgaggtgt ctaatgacgt
      481 catctacaaa gaactgaaag gagtttgatg atgactgcat cagcatcaag gggaaggcgg
      541 ccgtcaaagt tgttcaggga cgcgaaagcc ttctcgagtt tttctgtaaa cgatctgcag
      601 caagcgaaag agttttacgg tcaaacactc ggactcgacg ttaaagaaac cgctgaaggc
      661 ctggaattac gtaatggagg gcagagcgtc ttcctctatc cgaaaccaaa ccataccccg
      721 gcatcattca ccgttctgaa ttttcaggta gacgatatcg aaacggccgt tgacgagctc
      781 gaggctttag gtgtgaagct cgagcattac gatctgcccg acatgaagac cgacgagcgc
      841 ggcatcttcc gtggtcagcc tggaccacaa atcgcgtggt tcaaggaccc cgcgggcaac
      901 attctgtcgg tgcttgttga gaagtaatca agtgagaagg tgtaggtcct atagattcta
      961 taggacctat accacgatta tcgcccggct tttgggcgct tgggatttgt cttgccggtg
     1021 ctgcgtgcgg cttcttcgtc atccgccgtg ccgatgttct ggtcggcgcc cgcggcttgc
     1081 agcacttcgg atcgtttgtc caacttgttt tcagcgcccg aacgcggact ctgtttcttt
     1141 ccttgtccgg ttggcggctg attgagtcga ttacgacttg cgtttggcat tagtgatcac
     1201 ctcgttcaga ttcgattcgt ctctggcctg ttgttgcggt ctggcgttta gcgtttgtgg
     1261 gttctcgcgc tcgtgcatcc gcttgttctt cttgtctttt cgctgatggt ccttcttgtt
     1321 ccgatctttg tctgacatct tcaactctcc attctcaagc ttgtgtcgtc agcgcctgtg
     1381 aacgtggcgt ggcgctgctg tcttcgtacg gcaccgcgtt ctccggcgag attcgataac
     1441 gcagcaacgc gccgacgccg ccgatgtgtt gcagccgcgt gtcgtcctcg atgaacgtga
     1501 cgcgcgccgc ggaaagtaaa ttcgcgcggc ggacgagctc gtcggccaca gattgcggat
     1561 cgaacgccgc cagtggttct ccgtcgggct cgtaaagttt cagcaccttc ttcacttctt
     1621 cttcgtcgta cgcgagcttg tcgggtgtgg aaacgatcag catctcttcg acttgtccat
     1681 tcgacagcgc cgcgagtgtg tcaggcacgc cggcaacgcc gagatcgtcg gcccgaaact
     1741 cgttcaacag acgttcgagc ttctccatgt cggttagcga atcgtgacga tgaaacgctt
     1801 tcagcgactc gtcgaatagc tcgtgctcag gcgtgtcgat accgaagctc agcgcgtcga
     1861 tcactttgtc cgacaacgcc ggtgtcagtt gctcgcgaat caaaggaatc actacagt
//
LOCUS       DASWTX010000901         1998 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_56799, whole genome shotgun sequence.
ACCESSION   DASWTX010000901 DASWTX010000000
VERSION     DASWTX010000901.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1998)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1998)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1998
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56799"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..185)
                     /locus_tag="VGD38_13595"
     CDS             complement(<1..185)
                     /locus_tag="VGD38_13595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729105.1"
                     /translation="MCGIVGFVRNDGKAIDEALLTRMCDAIRHRGPDDDGFYVNGSVG
                     LAMRRLAIIDLKSGQQP"
     gene            232..1890
                     /locus_tag="VGD38_13600"
     CDS             232..1890
                     /locus_tag="VGD38_13600"
                     /inference="COORDINATES: protein motif:HMM:NF004040.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional sulfate
                     adenylyltransferase/adenylylsulfate kinase"
                     /protein_id="HEY0729106.1"
                     /translation="MAKQSLPDALQRAKELPTIRLSDRSICDLELLATGAFSPLDRFM
                     GAEDYRRVVAEMRLASGQLFPIPITLPIANDERVELDTDVTLLDARNEILAIMTVEEI
                     YEWDLEETAHLVFGTTDARHPLVAEMHRWGSRNISGRLQVLNLPKHYDFRELRLTPAQ
                     TRERLAQTGIANVVAFQTRNPLHRAHEELTKRATEEVDGVLLLHPVVGMTKPGDLDHF
                     TRVRTYKALANKYYDPQRIVLALLPLAMRLAGPREALWHALIRRNYGANHMIIGRDHA
                     SPGNDSTGKPFYPPYAAQELVESFSEEIGMRVLPFGEFVYLPEEDRYEDVHKVSAHVA
                     TAQLSGTLIRDWYRSGDAKLPSWFARPEVTEAIADVYPPRHKQGFCIWFTGLSASGKS
                     TTAEILTVLLQEFGRQVTLLDGDIVRNHLSRGLGFSKEDRDTNIRRIGFVAAEIVKHQ
                     GTVICAAVSPYRATRNDVRSLIGSERFIEVFVNTPLEECERRDIKGMYRKARLGELKN
                     FTGIDDPYEPPANPELEIDTVNYTAEENAHAIIAYLKERQFLGA"
BASE COUNT          427 a          574 c          597 g          400 t
ORIGIN      
        1 atcggttgct ggccgctttt caggtcgatg atcgcgaggc ggcgcatcgc gaggccgacg
       61 gagccgttga cgtaaaaacc gtcgtcgtcc ggcccgcgat ggcgaatcgc gtcgcacatg
      121 cgggttaaca gcgcttcgtc aattgccttg ccgtcgtttc gaacgaatcc aacgatgcca
      181 cacatatcgg ttaagagaca ggtatattat ctgtgttaat ctgtcaaatc cgtggctaaa
      241 caatcacttc cagacgcact ccaacgcgct aaagaactgc caaccattcg cctctcggat
      301 cgttcgattt gcgatctcga actgctggct accggggctt tcagtccgct cgaccgtttc
      361 atgggcgcgg aagattaccg ccgcgtcgtc gcagaaatgc ggctcgcgag cgggcagttg
      421 tttccgattc cgataacact gccgatcgcg aacgacgagc gcgtcgaact cgacactgac
      481 gtcacgctgc tcgacgcacg caacgagatc ctcgcgatca tgaccgtcga ggagatttac
      541 gaatgggacc tcgaagaaac cgcgcattta gtgtttggca cgaccgacgc gcgccatccg
      601 ctcgttgcgg agatgcatcg ctggggctcg cgcaatatca gcggccgttt gcaggtgctc
      661 aatctgccga agcactatga ctttcgcgaa ctgcgactca cacctgcgca gacacgcgaa
      721 cggctcgcgc aaaccggcat tgcgaacgtc gtcgcgtttc agacgcgcaa cccgctgcat
      781 cgcgcgcacg aagagttgac caaacgcgcc acggaagagg ttgacggtgt gctgctgttg
      841 catccggttg tcggtatgac gaagcccggc gacctcgatc acttcacgcg cgtccggacc
      901 tacaaagcgc tcgccaacaa atattacgac ccgcaacgca tcgtgctggc gctgttgccg
      961 ctcgcgatgc ggctggccgg acctcgcgag gcgttgtggc acgcgttgat ccgtcgaaac
     1021 tacggcgcga atcacatgat catcggccgc gatcatgcga gtccagggaa cgattcgacc
     1081 gggaagccgt tttatccgcc gtatgcagcg caggagctgg tcgagagctt ctccgaagag
     1141 attggtatgc gtgtgttgcc gtttggcgag tttgtttatt tgccggaaga agatcgttac
     1201 gaagacgtgc acaaggtcag cgcgcatgtg gcgactgcgc agttgtcggg gacgttgatt
     1261 cgcgactggt atcgcagtgg ggatgcgaag ctgccgtcgt ggtttgcgcg gccggaagtg
     1321 acggaagcga ttgcggacgt ttacccgccg cggcacaaac aggggttttg tatctggttc
     1381 actgggctga gcgcgtcggg caagtcgacg acggcggaga tcttgacggt gttgttgcag
     1441 gagtttggga ggcaggtgac gctgctcgac ggcgacatcg ttcgcaatca cctgtcgcgg
     1501 ggattggggt tcagcaaaga ggatcgcgac actaatatca ggcggatcgg ttttgtcgcc
     1561 gccgagatcg tgaagcatca gggaacggtg atctgcgccg ccgtgagccc gtaccgcgcg
     1621 acgcgtaacg acgtgcgcag cctgatcggc agcgagcggt ttatcgaagt gtttgtgaac
     1681 acaccgcttg aggaatgcga gcgtcgtgac atcaaaggga tgtaccggaa agcgcgcctc
     1741 ggcgagttga aaaacttcac cggcatcgac gacccctacg agccccccgc caaccccgaa
     1801 ctcgaaatcg acaccgtgaa ttacaccgcc gaagaaaacg cgcacgcgat catcgcgtat
     1861 ctcaaggagc gtcagttttt aggggcctaa tcccaccgac atagtcggtg gtaccttcat
     1921 acccaaccta gactcactca agaacagcga gcaatcccac caacgaagtt ggtggtttgt
     1981 tcatacccta cctacacc
//
LOCUS       DASWTX010000902         5191 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_35138, whole genome shotgun sequence.
ACCESSION   DASWTX010000902 DASWTX010000000
VERSION     DASWTX010000902.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5191
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35138"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..219
                     /locus_tag="VGD38_13605"
     CDS             <1..219
                     /locus_tag="VGD38_13605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729107.1"
                     /translation="LMLYARGSAVYGHFRDSHEYAGGLKWHFLPTERLWLNAELMRVM
                     RAPYSGGFTPYTSGLTGWVPMVQTVLAF"
     gene            complement(279..1547)
                     /locus_tag="VGD38_13610"
     CDS             complement(279..1547)
                     /locus_tag="VGD38_13610"
                     /inference="COORDINATES: protein motif:HMM:NF012925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 16 protein"
                     /protein_id="HEY0729108.1"
                     /translation="MVKSNDSRRILSRASRIFFLVLTTLLSTLTAHAAAPVGQTIWIR
                     ASATGLFVSADQARGAWAPLVADRTTTDAWEQFQVVDAGGGFLAFRSLGTGLFVSADQ
                     NRGAWAPLVADRPSIGTWEQFTWSDLAGGAFTLRGRATNRFVSADLARASCAPLVSDR
                     TVANTWEQFTWGAVGTQPAPGSPPGFSRLVWSDEFNGSTINAANWGFDLGGGGWGNNE
                     LQNYTSRPENARISNGMLVIEARRENFGGNAFTSARLKTQGKQSFGINTWVEARINAP
                     EGQGVWPAFWMLGNSISTVGWPSCGEIDIMEIQGQNPARNFGTIHWADAGGQHVSFGG
                     IFNSSSSLTAGFHTFAISRTGSTIRWYVDRIQYAEANIAGGINSTSEFQGPFFIILNV
                     AIGGNFVGPPDGSTVFPQQMQVDWVRVWGN"
     gene            1786..2010
                     /locus_tag="VGD38_13615"
     CDS             1786..2010
                     /locus_tag="VGD38_13615"
                     /inference="COORDINATES: protein motif:HMM:TIGR02609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HEY0729109.1"
                     /translation="MGVLKVTTVGNSVGVILPKEILERLRVKRGDSLYVIETKNGIEL
                     TAYNPEFAKQVEIAEQVMREDRDALRKLAK"
     gene            2015..2404
                     /locus_tag="VGD38_13620"
     CDS             2015..2404
                     /locus_tag="VGD38_13620"
                     /inference="COORDINATES: protein motif:HMM:TIGR01550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system death-on-curing
                     family toxin"
                     /protein_id="HEY0729110.1"
                     /translation="MKRIVWLLEETIIAIHHRQIAEHGGGEGLRDEGLLSSALARPQN
                     LFAYGDPPPDLADLAAAYAYGLARDHPFVDGNKRTSLIAARTFLLLNGVNLEAGQDEK
                     FLSFQRLADGSLTEKELADWISKRIEK"
     gene            complement(2506..3108)
                     /locus_tag="VGD38_13625"
     CDS             complement(2506..3108)
                     /locus_tag="VGD38_13625"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEY0729111.1"
                     /translation="MKKTMILVGLVVAVLMMSPVARADQLVFTTTLTGSQEVPPSGSP
                     GIGSALVTLDTVTNILTINVSFAGLVSPTTASHIHCCTGPGANAMVATAVPTFPGFPL
                     GVTTGTYLMSFDLTSASTYNPAFIAAHGGTVAGAQAAFIAGLTSGLTYLNIHTVQFPG
                     GEIRGQLVGEIPEPASLLLLATGIVGAAGALRRRRQRTEE"
     gene            3779..4147
                     /locus_tag="VGD38_13630"
     CDS             3779..4147
                     /locus_tag="VGD38_13630"
                     /inference="COORDINATES: protein motif:HMM:NF025120.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY0729112.1"
                     /translation="MKRPVKAAEPKKSAARKRKVEVSSGNVFADVGFADSEVRLLKAN
                     LASKIAQLIEKKGWTQAQTAQRTALDQPKVSRLLRGQLSGFSADRLFAILNRLGHSVE
                     VRISAKERPPEKARTRVMLG"
     gene            4303..>5191
                     /locus_tag="VGD38_13635"
     CDS             4303..>5191
                     /locus_tag="VGD38_13635"
                     /inference="COORDINATES: protein motif:HMM:NF025616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4349 domain-containing protein"
                     /protein_id="HEY0729113.1"
                     /translation="MKSPISLFVLSVLILASVSCDGARTDSAANIPAADAYKGRTAET
                     RTAAESQPAAKSPALTAQETVQFKKVSLDQTEKAEEISAAADRKIIRNADLTMEVSST
                     TDTQHSIASIAESHGGFVVTSEAKQRESTEPAKRTLDIRLVVRIPENRFGSALDQIRG
                     LTTNLTEEKVSGQDVTEEFIDLEARIRTQKALEAQFLQIMRQTGKIVDALEVQRQIAE
                     VRSDIERLEGRKRFLENRSALSTITVNIMAPKAVVVVPTTGFKASVRDAVSESIDVGS
                     EIVLFFVRCLIVMIPISLFV"
BASE COUNT         1210 a         1513 c         1418 g         1050 t
ORIGIN      
        1 ctcatgctgt atgcccgcgg gtccgctgtt tacggacact tccgcgactc gcacgaatat
       61 gccggcggtc tgaagtggca tttccttccg accgagcgtt tgtggctcaa cgcggagttg
      121 atgcgcgtga tgagagcgcc gtacagcgga ggcttcacgc cgtacacttc aggattgacc
      181 ggctgggtgc cgatggttca aaccgtcctc gccttctaac aaatcaagcg gagtcgggtt
      241 tttattacgc ccaactccgc tcgcctttaa aggaagactt agtttcccca gactctcacc
      301 caatcaacct gcatctgttg tggaaacaca gtgctgccgt cgggcggacc cacaaagttt
      361 ccgccaatcg cgacgttgag gatgatgaag aacggtccct ggaactcgga cgtgctgttg
      421 attccgcccg cgatgtttgc ctccgcatac tgaatccgat cgacgtacca cctgatcgtc
      481 gatccggtgc gcgagatcgc gaatgtgtgg aagccggccg tgagcgagct cgacgagttg
      541 aagatcccgc caaacgaaac gtgttgtccg ccagcgtcgg cccagtgaat cgtaccgaag
      601 tttcgcgccg ggttctgtcc ttgaatctcc atgatgtcga tctcgccgca cgacggccag
      661 ccgacggtgc tgatgctgtt gccgagcatc cagaacgcgg gccacacgcc ctgcccttcc
      721 ggcgcgttga tgcgcgcttc gacccacgtg ttgatgccga acgattgttt gccctgcgtc
      781 ttcaaacgcg cggaagtgaa tgcgttgccg ccgaagttct cgcgccgcgc ttcgatgacc
      841 aacattccgt ttgagattcg tgcgttctcc ggacggctgg tgtagttctg gagttcgttg
      901 ttgccccaac cgccgccgcc gagatcgaag ccccagttcg cggcgttgat cgtcgacccg
      961 ttgaattcat cggaccaaac gagacgcgag aaacccggag gcgatcccgg cgcgggctgt
     1021 gtgccgaccg cgccccacgt gaactgttcc cacgtgttcg cgaccgtgcg atcgctcacg
     1081 agtggtgcgc acgaagcgcg cgcaagatca gccgacacga accggttcgt ggctcggcct
     1141 cgcagcgtga acgcgccgcc cgcgagatcg gaccacgtga actgctccca cgttccgatc
     1201 gacgggcgat cggcgacgag tggcgcccac gcgccgcggt tctgatccgc ggatacaaac
     1261 agacctgttc cgagcgatct gaacgcgaga aagccgccgc ccgcgtcgac gacctgaaac
     1321 tgctcccacg cgtcggtcgt cgtccgatca gcaaccagcg gcgcccatgc tccgcgagcc
     1381 tggtccgccg aaacaaagag tcccgtcgcg gacgccctga tccagatcgt ctgtcccacc
     1441 ggcgccgccg cgtgcgcggt gagagttgat aagagtgtgg ttaaaactaa aaagaagatc
     1501 ctcgaagcgc gtgacaaaat cctgcgacta tcatttgact tgaccatatc tcctcctcaa
     1561 ttgggtgctc cgccctcttg atatccgtca acgttgtagg ggatgcgtgt ccaggtcgac
     1621 gtgctgagcg tcacgtgaga accaatggga ggcccttagg tgtagtccgc ataataccat
     1681 ccatccgact cgagacagat aagttctctt gtcgtctata ccgcaacggg ttataacagg
     1741 cgttataata agcgtgcgga ctacaagtcc tgctaaggag ctgtgatggg tgtcttaaag
     1801 gttacgacgg tcgggaattc agttggtgtg attctcccaa aagagattct cgagcgcttg
     1861 cgcgtcaagc gaggagacag tctctacgtt atagaaacaa agaacggtat cgagctgacc
     1921 gcctacaatc ctgagtttgc gaagcaggtg gagatcgctg aacaggtgat gcgtgaagat
     1981 cgagatgctt tgcggaagct agctaaatag cctcatgaag aggattgttt ggcttctcga
     2041 agaaacgatc atagcgatcc atcatcgaca aatcgcggaa catggtggag gtgaaggact
     2101 cagagatgag ggcctgcttt catctgcgtt agcaagacca cagaatctct tcgcatacgg
     2161 tgacccacct ccggacctgg ccgatctcgc cgcagcatac gcttacggac tcgcgcgcga
     2221 tcatccgttc gtagatggca ataagcgcac gtcactgatc gcagcccgca cctttctttt
     2281 attgaatgga gtcaatcttg aagctggcca ggatgaaaaa ttcctttcct tccaacgctt
     2341 ggctgatggc tctttaaccg agaaggagct ggctgattgg attagtaaac gaattgagaa
     2401 gtagagcaat cgacgtgcgc tcgacgatcg aaagcgggag gagatagggt gtctcctccc
     2461 gcgcttgtca ctttcgcaga ttgttgggtt ggaccaacgg agccttcact cttcagtccg
     2521 ttgccggcgc ctgcgcagcg cgcctgccgc tccgacaatt cccgtcgcta acagaagcaa
     2581 gctcgccggt tcgggtatct cgccaacaag ctgcccacga atctcgccgc cgggaaattg
     2641 aacggtgtga atgttcaaat acgtcagccc actcgttaag cccgcgatga acgccgcctg
     2701 tgctccagcc acagtcccgc catgcgccgc aataaaggcc gggttgtagg tggacgcaga
     2761 tgtcaggtca aacgacatca agtaagtacc ggttgtaacg cccagtggaa acccgggaaa
     2821 cgtcgggacc gccgtcgcaa ccatcgcgtt tgctccggga ccggtacaac aatggatgtg
     2881 agacgccgtc gtgggactca ccagaccggc gaatgaaacg ttgatcgtca gtatgttagt
     2941 gaccgtgtcc aacgttacca atgcactccc aattcctggt gaaccactcg gcggtacctc
     3001 ctgtgagccg gtcaacgtgg tagtgaagac gagttggtcc gctctggcca ccggagacat
     3061 catcaacacg gcaaccacca gcccaacaag aatcattgtt ttcttcattc attacctccc
     3121 ttaatcgttc tgaagcgtcg cgctgcaact gaaccactgt tgcagtcgac gcgtttggcc
     3181 aaactggacc acgccagttc agtcaagtgc aaacactcat gagttgttct ttcgtgaaac
     3241 aaaccttcga cgtcagttct cgcaaagcag caaacgagca cggtgcttta aagcggcgta
     3301 cgtcgcgaca gtacgcagtc tctcgttcac agtacgagtg ataaccacgc gcgaagtttg
     3361 tgtcgggagc caatcaaagt tgcgggggtc caatactacc ttctgactga tcgcaaaacc
     3421 agacacgttt ttgtgttgtc gagtgcctta ggggaatgaa tgctgtggca aacaggatgc
     3481 cgcatctttg aacgcacgaa aatacgcgaa cacagggttt tgttcggtgc gttagcggac
     3541 ataacgttgc gacgttcgga tcgtgtttag aattttggat cgcgccacca agcagcaaga
     3601 gtgggtcgac ctgcgcaact gcaaagaagt ggacaacgat tcgcgcggcc gcactattac
     3661 gactcgatga attgaacacg gtatgccaca taaggcatac tgcgcattct gcgaagcgcc
     3721 aaatgtcagc gaagccgctg gcggattcga ggcgccggga cttgcgaggg cgcgaaaaat
     3781 gaagagacca gtcaaagctg cagagccgaa aaagtccgcc gcaagaaagc ggaaggtgga
     3841 ggttagcagt ggaaacgtgt ttgctgacgt tggtttcgca gattcagaag tacgtctttt
     3901 aaaggcaaat ctggcgtcaa agatcgctca actaatcgag aagaaaggct ggacccaagc
     3961 ccagactgcc caacgcacgg cccttgacca accaaaggtc tctagacttt tacgcggcca
     4021 actttccggc ttctccgctg accgcttgtt cgcgatcctg aatcgcttgg gtcacagcgt
     4081 ggaggtgcgc atttcggcga aggaaagacc acccgaaaag gcccgtacac gcgtcatgct
     4141 cggttaagac ctcttaccaa tcgcgacatt cccgaactga caactcgcac tagccaccat
     4201 cctccactgt ggaaactcac gttggaccca agcgacgggc gtgcaagtct gagggccgcc
     4261 aacgttcata ggtagtttca atattttcac tggaggtcca tcatgaaatc tcccatctcg
     4321 ttattcgtgt tatccgtgtt aatcctcgcc tcagtgtcgt gcgatggtgc gagaaccgat
     4381 tcagcggcga acatccctgc ggcagacgcg tacaaaggcc ggacggcgga aacaagaaca
     4441 gcagcggaat cacaaccagc cgctaagtca cccgcgctta cagcacagga aacggtacag
     4501 ttcaagaagg tctccctgga ccaaaccgaa aaggcagaag aaatctccgc cgccgccgat
     4561 cgcaagatca tccgcaacgc cgatctcaca atggaagtct cgtcaaccac cgacactcaa
     4621 cacagcatcg cctcgatcgc cgagtcgcac ggcgggttcg tcgtcacttc cgaagcgaaa
     4681 caacgcgaga gcaccgagcc cgccaagcgc acactcgaca tccggctcgt ggtccgcatc
     4741 ccggaaaacc gtttcggctc cgcactcgat cagattcgcg gcctgacaac aaatctcacg
     4801 gaagaaaaag tcagcgggca ggacgtcacc gaagagttca tcgatctcga agcacgcatc
     4861 cgcacgcaaa aagcgcttga agcacagttc ctgcaaatca tgcgacagac cggcaagatc
     4921 gtcgacgcgc tcgaagtgca acggcaaatc gccgaagtgc gcagcgacat cgaaagactc
     4981 gaaggccgca aacgctttct cgaaaaccgc tcggccctct cgaccatcac cgtgaacatc
     5041 atggcgccaa aagccgtcgt cgtcgtacca accaccggat tcaaggccag cgtccgcgac
     5101 gccgtctcgg aaagcatcga cgtcggttca gaaatcgtgc tcttcttcgt gcgttgcctg
     5161 atcgtgatga tcccgatctc gctgttcgtg c
//
LOCUS       DASWTX010000903         1909 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_101902, whole genome shotgun sequence.
ACCESSION   DASWTX010000903 DASWTX010000000
VERSION     DASWTX010000903.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1909
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101902"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1654)
                     /locus_tag="VGD38_13640"
     CDS             complement(<1..1654)
                     /locus_tag="VGD38_13640"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HEY0729114.1"
                     /translation="MRAAIERYTLDRGSLTRSYPVPMSQARRERFKKFYGEWLASLKS
                     LDFDSFSQDGKVDYVLFKNHLEYELRQLDIQAQQISEILPLIPFAETIIGLEEARRRM
                     EPIDSAKIAATLTELRKQVDERRRTVEGLKPKKTVANRAVMATTGLRNNLRNWYTFYN
                     GYDPMFTWWNEEPYRSLDQALAGYASLITEKVVGIRPAAGQAQTESNRGQGFQGQRTN
                     TSANARPGDTSDIVGDPIGREALISELRSEMIPYTPEEIIAIGEKEMAWCENEMKKAS
                     RDLGYGDDWHKALEHVKNLYVDPGKQPQMIRDLALEAIKFVEDNNLVTVPELAKESWR
                     MEMMTPERQLVSPFFLGGEVIQVSFPTNTMAHEQKMMSMRGNNIHFSRATVHHELIPG
                     HHLQGFMSARNKPYRAVFGTPFWSEGNALYWELLLWDLNFAKTPENRIGMLFWRMHRC
                     ARIIFSLSFHLEKMTPQECIDLLVNKVGHERDNATAEVRRSLDGSYGPLYQIAYLIGG
                     LQQYAMHKELVGSGKMTNRAYNDALLKENRIPIEMLRAAITNQ"
BASE COUNT          368 a          548 c          535 g          458 t
ORIGIN      
        1 tttggttcgt gatcgcggct cgcagcatct cgatcggaat gcggttctcc ttcagcagcg
       61 catcgttgta cgcgcgattc gtcatcttgc cggaaccgac cagttccttg tgcatcgcgt
      121 attgctgcag cccgccgatc aaatacgcga tctggtaaag cggaccataa ctgccgtcga
      181 gcgaacgccg cacctcagcc gtcgcgttgt cgcgctcgtg gcccaccttg tttaccagca
      241 gatcgatgca ctcctgcggc gtcatcttct cgagatgaaa actgagtgaa aagatgatgc
      301 gcgcgcagcg gtgcatgcgc cagaagagca tgccgatgcg gttctcgggt gtcttcgcga
      361 agttcaaatc ccacagcagc agttcccagt aaagcgcgtt gccttcggac cagaacggcg
      421 tgccaaaaac cgcgcggtac ggcttgttgc gcgcggacat gaaaccttgc aggtgatggc
      481 cgggaatgag ttcgtggtga acggtggcgc gcgagaagtg gatgttgttg ccgcgcatgc
      541 tcatcatctt ctgttcgtgg gccatcgtgt tggtcgggaa cgaaacctgg atcacttcgc
      601 cgccgagaaa gaacgggctg acgagttggc gttcgggagt catcatctcc atgcgccaac
      661 tttcttttgc cagttccggg acggtgacga ggttgttgtc ttcgacaaac ttgatcgctt
      721 cgagtgcgag gtcgcggatc atctgtggtt gtttgccggg atcgacgtaa agatttttga
      781 cgtgttcgag cgctttgtgc cagtcgtcgc cgtacccgag atcgcgtgag gccttcttca
      841 tctcgttctc gcaccaggcc atctctttct cgccgatagc gatgatctct tcgggcgtgt
      901 aagggatcat ctcggagcgt agttcgctaa tcaacgcctc acgtccgatc ggatcgccaa
      961 cgatgtcgct ggtgtcaccc ggtctggcat ttgcacttgt attcgttctt tgtccctgaa
     1021 atccctgtcc cctgttagac tcggtttgcg cttgccccgc cgccgggcgt attccaacaa
     1081 ccttttcggt gattagcgat gcgtagcctg ccagcgcctg gtccaacgac cggtacggct
     1141 cttcgttcca ccacgtaaac atcggatcgt aaccgttgta gaacgtgtac cagttgcgca
     1201 aattatttcg cagccccgtc gtcgccatga ccgcacgatt cgcgactgtc tttttgggtt
     1261 tcaagccttc caccgtgcga cgccgttcat caacctgttt tctcaactcc gtcagcgtcg
     1321 ccgcgatctt cgccgagtca atcggctcca tccggcgccg cgcttcctcg agcccgatga
     1381 tggtctcggc gaacggaatg agcggcagga tctctgagat ctgctgcgcc tgaatgtcta
     1441 gttgccgcag ttcgtattcg agatggttct tgaagaggac gtaatcgacc ttgccgtcct
     1501 ggctaaacga gtcgaaatcg agcgacttca gcgacgcgag ccactcacca taaaacttct
     1561 tgaacctttc ccggcgcgcc tgcgacatcg gcaccggata cgaccgcgtc aaactcccgc
     1621 ggtcgagcgt ataccgctca atcgccgcgc gcatctcgct tacgggttcg gtttttgtct
     1681 tacgggcgcc attttgggcg ggcgactgca aagggaaaca gcaggccaac aggcagaaaa
     1741 gcagaacacg ggcaagcaga atacggggcg ctgacgtcat ttgagttgtt ctcctgcggg
     1801 aaatagagag gacagattat acacagggtt gcgcgggtaa gagaccgttt gctagaatcc
     1861 cacgcgtaat tttcttactt ttgctaggag ctccagaaga ccttcgcat
//
LOCUS       DASWTX010000904         2149 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_342723, whole genome shotgun sequence.
ACCESSION   DASWTX010000904 DASWTX010000000
VERSION     DASWTX010000904.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2149
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342723"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..198)
                     /locus_tag="VGD38_13645"
     CDS             complement(<1..198)
                     /locus_tag="VGD38_13645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019394039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uL13 family ribosomal protein"
                     /protein_id="HEY0729115.1"
                     /translation="MSTYFPSGKDLAGRRKWYVVDASGQTVGHLASEVASMLSGKRSP
                     QWTPFLDTGDHVIVINARKAVL"
     gene            complement(443..1657)
                     /locus_tag="VGD38_13650"
     CDS             complement(443..1657)
                     /locus_tag="VGD38_13650"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEY0729116.1"
                     /translation="MNNFSRATCALLLAVSLLGSSTIALAQTTTTKSTEQQAGTQTQT
                     ATPKTDDAKQADAKKAQTTAATPAKSTKPLSTNEDPAMIGKRNINGGFIGKISGGTEK
                     EVRQGREAAAEVDRQAKFVDDPVITEYVNRVGQNIVLHSDAKVPFTIKVIDSDEVNAF
                     ALPGGFFYVNKGLLLAADNEAELAGVMAHEIAHVAARHAVENQAKMGLLEYAALGASI
                     FLGGIPGMIYQNTAGIGLLGIFMKFSRGAEEEADKLGVQYMYAAGYDPGAMATMFEKL
                     EAKNKKKPGFISKAFATHPAPPDRRQAAINLAARFPEREEYVISSSEFQRVKSRLLRL
                     SNARASTTGAIQGVDENGAPGRPTLKRRQPTPDDTTTTPEGETKPADTSAPPKLKRNT
                     GDTTKPADPDKP"
     gene            1805..>2149
                     /locus_tag="VGD38_13655"
     CDS             1805..>2149
                     /locus_tag="VGD38_13655"
                     /inference="COORDINATES: protein motif:HMM:NF022187.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEY0729117.1"
                     /translation="MPAKKRKEKPAVSIIGTGRLGTALALALSGSGYPLRSLVARQIK
                     SARKAAALLHGKVDAYAANKIGLLPQADLFLISTPDDQIATVAAQLATLGFDRKPVVL
                     HTSGALSSEVLSP"
BASE COUNT          412 a          652 c          596 g          489 t
ORIGIN      
        1 caacacggcc ttgcgggcat tgatcacaat gacatgatcg ccagtgtcga gaaagggagt
       61 ccactgcgga ctgcgcttgc ctgacagcat agaagcaact tcagacgcca gatgcccgac
      121 ggtttgaccg ctcgcatcca ccacgtacca ttttcgtctt ccagcgaggt ccttaccgct
      181 ggggaagtat gtcgacatag ttaagtatct ctgttttcag cgaataaaac gcgaacggct
      241 agaatacccg ccgctcggaa aagttgtcaa ggtaacacag accaccgcaa tccaccaaaa
      301 ggccctctgt tcgccaacgc tttcagcgtt tcgtcgctct acacaccaaa acccagggtt
      361 gaaacaaccc tgggctggaa ctggcgaacg ccttcggcgt tgtgactcgc gcgagacgac
      421 gaacctatgg attgacctaa ccctacggct tgtcggggtc ggcgggtttc gtcgtgtcgc
      481 cggtgtttcg cttcaacttc ggcggggccg aggtgtcggc gggtttggtt tcaccctcag
      541 gcgtcgtggt cgtgtcgtcc ggggtcggct ggcgccgttt caatgtcgga cggcccggtg
      601 cgccgttctc gtcaacgccc tgaatcgccc cggtcgtcga ggcacgcgcg ttggacagcc
      661 gcaacagacg gctcttcacc cgctgaaact ccgaactgct gatcacatac tcttcgcgtt
      721 ccgggaaccg tgccgccagg ttaatggctg cctgtctgcg gtccggtggc gccggatgcg
      781 tcgcaaacgc tttcgaaatg aatcccggtt tcttcttatt cttggcttcg agcttctcaa
      841 acatcgtcgc catcgcgccc gggtcgtaac ccgcggcgta catgtactgg acgccgagct
      901 tgtcagcctc ttcctcagcg ccacggctga acttcatgaa aatgccgagc agtccgattc
      961 ccgccgtgtt ctggtaaatc attcccggaa tgccgccgag gaaaatcgaa gcacccagcg
     1021 cggcgtactc gagcagaccc atcttcgcct ggttttcaac cgcgtgccgt gccgcgacgt
     1081 gcgcgatctc gtgcgccatc acgcccgcga gctcagcttc gttgtcagcg gcgagcagca
     1141 aacccttgtt gacgtaaaag aaaccacccg gcagcgcaaa cgcgttgact tcgtcggagt
     1201 cgatcacctt gatcgtgaac ggcaccttag catcggagtg cagcacgatg ttctggccca
     1261 cgcggttgac gtactcggta atcaccgggt cgtcgacgaa cttggcctgg cgatccactt
     1321 ccgcagccgc ctcgcgtcct tgccgcactt ccttctccgt gccgccggaa atcttgccga
     1381 taaacccgcc gttgatgttg cgtttgccga tcatcgccgg gtcttcattc gttgacagcg
     1441 gcttggtcga cttcgcgggc gtcgcggcag tcgtttgcgc cttcttggcg tcggcctgct
     1501 tcgcgtcgtc cgtcttcgga gttgcggttt gtgtttgcgt accggcttgt tgttcggttg
     1561 atttcgtggt cgtcgtttgg gcgagagcta tagtcgaact ccccagcaaa gacaccgcca
     1621 gcagaagagc acaagtggca cgggagaagt tgttcatctc gaaaaaacct ccaaagaatc
     1681 gaacgacctg agggtagggg tctgcgatgt tgttttcgct aaatccagac gcgcagtcta
     1741 tgatgagcgg tctggccgca tggttgcgcg cctcaatttg cgttttaacg acctaaatat
     1801 acgcatgcct gccaagaaaa gaaaggaaaa gcctgcggtt tccatcatcg gaacaggccg
     1861 cctcgggacg gctctggcgc tagctctttc tggctccggc tatcccctgc gatcgctggt
     1921 cgcgcgccag attaaaagcg ctcgcaaagc cgcggcactt ttacacggaa aagttgacgc
     1981 ttacgctgcg aacaaaattg gtttgctgcc gcaggcagat ctgtttttga tttccacccc
     2041 tgacgatcaa atagcgacgg tcgcggctca acttgctact ctgggtttcg atcgcaagcc
     2101 cgtcgttctg cacaccagcg gcgcgctgtc atcagaagtt ctttcacct
//
LOCUS       DASWTX010000905         3491 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_101928, whole genome shotgun sequence.
ACCESSION   DASWTX010000905 DASWTX010000000
VERSION     DASWTX010000905.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3491)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3491)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3491
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101928"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..767
                     /locus_tag="VGD38_13660"
     CDS             <1..767
                     /locus_tag="VGD38_13660"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: protein motif:HMM:NF006054.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004731 - purine-nucleoside phosphorylase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEY0729118.1"
                     /translation="IAIVLGSGLGGFADEFDEAVGIPYEEITGFARSTAQGHAGRLVI
                     GKIDDIPVMAMQGRVHYYEGYSLEQVTFPIRTFKVLGVKTLILTNASGGINVQLNQGG
                     LMVISDHLNLMGDNPLRGPNDERFGPRFPDMSAVYSAELQEIVIEEAKSIGVELRRGI
                     YGALSGPSYETPSEIHLLRNLGADAVGMSTVPEAIVARHMDLEVLGISCITNMAAGIS
                     DQPINHEEVMATGDRVRDVFALLLQKVVGRIHSRVV"
     gene            775..1416
                     /gene="udk"
                     /locus_tag="VGD38_13665"
     CDS             775..1416
                     /gene="udk"
                     /locus_tag="VGD38_13665"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002638452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004849 - uridine kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HEY0729119.1"
                     /translation="MSLIIGICGGTGSGKTTVANRILESVSANEVVFIQQDSYYRNLT
                     DLPLDYRHIANFDHPDALDNDLLVNHVRRLKAGEAVELPLYDFKTHTRMSKTRHVEPK
                     PIVIVEGILIYADPRLLEQMDIKVFVDTPDDIRFIRRLRRDLAERGRTIESVIEQYIA
                     TVRPMHMQFVEPSKRHADVIIPEGGHNLVSIDLLSGKIRERLASALTSVGGQL"
     gene            1413..1820
                     /locus_tag="VGD38_13670"
     CDS             1413..1820
                     /locus_tag="VGD38_13670"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: protein motif:HMM:NF004064.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004126 - cytidine deaminase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0009972 - cytidine deamination [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HEY0729120.1"
                     /translation="MSEDLQPLIEAAKEAREHSVAPFSNFLVGAAVRTANGKVYTGCN
                     VESASYGLTVCAERVAIWKALSEGERDFTELAVVADTETLTPPCGTCRQIIWEFARGA
                     TIVFANLEGKSEIFHIADLLPRAFDARFLKKTT"
     gene            1870..3249
                     /locus_tag="VGD38_13675"
     CDS             1870..3249
                     /locus_tag="VGD38_13675"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEY0729121.1"
                     /translation="MIANPLSDVDAQNRRRAVDLLVLGGTIVTMDQTRRVIDDGGIAV
                     SGGRIVAIGPRAEIERAYTSRQRVSAAGKVLTPGLINGHTHIPMVLFRGLADDLDLQE
                     WLTKYIFPAEAKNVTEEFVRVGTRLGLAEMIRGGTTTYCDMYYFEDAIADETAKAGVR
                     GVLGETVIDFPVADNKTNAEAMAYVERFIARWKGHELIIAAIAPHAPYTVSEEHLKAA
                     RAFSDRTGAPIVTHIAETKREVDDMVKAKGSSPVAYLDRIGFLNERVIAAHMVWPQDG
                     DIAILQRRGVGVVHNPQSNMKLAAGVAPVPQMLKDGVLLGLGTDGAASNNDLNMWEEM
                     DTVAKLHKVFTGDPKVISAQQAFEFATIRGAQAVHLEKEIGSLEVGKRADLLIINRDT
                     LNQIPVYNIYSDLVYATKASDVETVIINGRLIMRDRRLLTLDEATVKTAARTFRDKII
                     KSVGTAAPQ"
BASE COUNT          734 a          890 c         1096 g          771 t
ORIGIN      
        1 ggatcgcgat cgttctcggc agcggtctgg gtggatttgc ggatgaattc gacgaggcgg
       61 tcggcatccc ttacgaagag attacggggt ttgcgcgttc aactgcacaa gggcacgcgg
      121 gccggctcgt gatcggcaag atcgacgaca ttccggtcat ggcgatgcag ggccgcgttc
      181 attactacga aggctactcg ctcgaacaag tcacttttcc gattcgcact ttcaaagttc
      241 tcggtgttaa gacgctgata ctgacgaacg cgtccggcgg tatcaacgtg cagcttaacc
      301 agggcgggct gatggtgatc agcgatcacc tgaacctgat gggcgacaat ccgttgcgtg
      361 gtccaaacga cgaacgtttc ggcccgcgtt ttccggacat gtcggccgtt tattcggctg
      421 agttgcagga gatcgtgatc gaggaagcga aatcgatcgg cgttgaactc cggcgcggga
      481 tttacggcgc gttgtctggt ccaagttacg agacgccgtc tgagattcat ctgttgcgaa
      541 acctcggcgc tgatgcggtt ggcatgagca cggttccgga agcgatcgtt gcgcgtcaca
      601 tggacctgga ggtgctcggc atctcgtgta tcactaacat ggccgcggga attagcgacc
      661 agccgatcaa tcatgaagaa gtgatggcga ccggggatcg tgtgcgcgac gtgtttgcgt
      721 tgttattgca gaaagttgtg ggtcgaattc atagtcgggt ggtgtaggtg aatcgtgagt
      781 ttaatcatcg gcatttgtgg tggcacgggc tcggggaaaa caactgttgc gaatcgcatt
      841 cttgaatccg tcagcgcgaa cgaagtagtt tttattcagc aggactctta ctaccgaaac
      901 ctcaccgatc tcccgctcga ctatcggcac atcgcgaatt tcgatcatcc cgatgcgctc
      961 gacaacgatc tgctcgtgaa ccacgtgcgc cgcttgaaag ccggtgaagc ggtggagttg
     1021 ccgctttacg atttcaagac gcacacgcga atgagcaaga cgcggcacgt cgagccgaag
     1081 ccgatcgtga tcgtcgaagg cattttgatc tacgccgatc cgcgcttgct ggaacagatg
     1141 gatatcaaag tgtttgtcga cacgccggac gatattcgtt tcattcgccg tttgcggcgc
     1201 gatttggcgg aacgcggacg cacgatcgaa tctgtgatcg agcaatacat cgcgacagtg
     1261 cggccgatgc acatgcagtt tgtcgagccg tcgaagcgtc acgctgacgt aatcattcct
     1321 gaaggtggcc ataacctggt gagcattgat ttgctgagcg gaaaaattcg cgagaggctg
     1381 gccagcgctt taacttctgt tggaggtcaa ctttgagcga agacttacag ccgctgattg
     1441 aggcggcgaa ggaggcgcgc gagcattcag tcgcgccgtt ctcgaatttt cttgttgggg
     1501 ccgcggtgag aaccgcgaat ggaaaagttt acacgggctg caatgttgag agtgcgagtt
     1561 atggtctgac tgtttgcgcc gagcgcgtgg cgatctggaa ggcgctgtcg gaaggtgaac
     1621 gagattttac ggagctcgcc gtggtggcgg atacagagac gttgacgccg ccgtgtggga
     1681 cttgccgtca gatcatttgg gagtttgcgc ggggcgcgac gatcgtattc gcgaacctcg
     1741 aagggaagag cgagattttt catattgccg acctgctgcc gcgtgcgttt gatgcgcgct
     1801 ttctgaagaa gaccacttaa tagttcatct atgctgaagc atttgcttat attcatcgcc
     1861 ttaatagcca tgattgccaa tccactttca gacgtcgacg cgcagaatcg gcggcgtgct
     1921 gtcgatctgc tcgtactggg cggcacgatc gttacgatgg accagacgcg ccgcgtcatc
     1981 gacgacggtg ggattgcagt gtctggcggg cgcatcgtgg cgattggacc acgggcagag
     2041 atcgagcgcg cctacacgtc gcggcagcgg gtgagtgcgg ctggcaaagt gctgacgccg
     2101 gggttgatca acggccacac gcacattccg atggtgctgt ttcgtggttt ggctgacgat
     2161 ctcgatttgc aggagtggtt gacgaagtac atcttccccg cggaagcgaa gaacgtgacg
     2221 gaagagtttg ttcgtgtggg cacgcggctc ggtctggcgg agatgattcg tggcgggacg
     2281 acgacctact gcgacatgta ttacttcgaa gacgcgatcg cggatgaaac tgcgaaagcg
     2341 ggtgttcgcg gtgtgctcgg cgaaacggtg atcgactttc cggttgcgga caataagacc
     2401 aatgcggaag cgatggctta cgtcgaacgt tttatcgcgc gctggaaagg tcacgagttg
     2461 attatcgcgg cgattgcgcc gcatgcgccg tacacggttt cggaagagca cctgaaagcc
     2521 gcgcgtgcgt tttccgatcg cactggcgcg cccatcgtca cgcacattgc ggaaaccaag
     2581 cgtgaagttg acgacatggt gaaggcgaag ggctcgagtc cggtcgccta tctcgatcgc
     2641 atcgggtttt tgaatgagcg cgtgattgca gcgcacatgg tgtggccgca ggacggcgac
     2701 atcgcgatcc tgcaacggcg cggtgttggt gtcgttcaca atccgcagtc gaacatgaaa
     2761 ctggcagcgg gtgtggcgcc tgtgccgcag atgttgaagg atggcgtgtt gttggggttg
     2821 gggactgacg gagctgcttc aaacaacgat ctgaacatgt gggaagagat ggacacggtt
     2881 gcgaagctgc acaaagtgtt cacgggcgat ccgaaagtga tctcggcgca gcaggcgttt
     2941 gagttcgcga cgattcgcgg cgcgcaggcg gtgcacctgg aaaaggagat tggctcgctg
     3001 gaagtaggga agcgtgcgga tcttctgatc atcaaccgcg acacgctcaa ccagataccg
     3061 gtctacaaca tctactccga tctcgtctac gccaccaaag cctctgacgt cgagaccgta
     3121 atcatcaacg gccgcctcat catgcgcgac cgccgcctcc taaccctcga cgaagccacc
     3181 gtcaaaaccg ccgcccgcac cttccgcgac aaaatcatca agagcgtcgg caccgccgcg
     3241 ccgcagtgag ccgatccttt actgggcgag cagatcggag cctataccgg gccagcgatc
     3301 ggagcttacc ttttgacgca ttccagtgct ctttcaaagc tgacgagcct tctgatcagg
     3361 gcgttgtatc tggagtgagc tgtattggac tcgctcgacg acaaaagatc gaaaagccgg
     3421 tgttcggggt tgagcggtaa ttctgtgggc aaactcaacc ccagctttcg taatcttggt
     3481 gctccgatcg c
//
LOCUS       DASWTX010000906         4114 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_35168, whole genome shotgun sequence.
ACCESSION   DASWTX010000906 DASWTX010000000
VERSION     DASWTX010000906.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4114
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35168"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3586)
                     /gene="mfd"
                     /locus_tag="VGD38_13680"
     CDS             complement(<1..3586)
                     /gene="mfd"
                     /locus_tag="VGD38_13680"
                     /inference="COORDINATES: protein motif:HMM:TIGR00580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003690 - double-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HEY0729122.1"
                     /translation="MSSQISGITTTLQQALRQVTETREYQQLMAEVRANARVISIGGL
                     VAGSARALAVAALQRETGKTFAVVSQATRDLEPWEQDLRFWYAALAGAETAGNEVLVL
                     PASETDPYAGISPHAQTLERRALALWRLQRQRPSFVLLTARALARKTVGPAAVARAGT
                     VLIRDEDHSPEELVEKLIATGYMREDPVTNVGEFSLRGGIVDIWPPGREAPVRLEFFG
                     DTVDSLREFDPENQLSTGQIRAVEVPPMREFWATALDFQLWSEAARERWNDERFARSL
                     RDRTAFADEGEPFAGWEWLIPISMDCTSTVFDHLGDAVLVVDEPGGIESYLSEFYERL
                     ADRYREIDQADDIALRPEELFLTDEELRGLIEQRQRIELRTLGRAAAETDMNLALDAE
                     APTVQLGREREARRPAFVFPVVEAAFEVEWQAQSAMRYHGRISDLAADVKRAAEENET
                     VLFVMPSLGVAERMSEILSEYQIGARLALTGESSDADKSAVVVTVGRLSSGFELPKSW
                     LIVHVESDVFDEIADTVERRGPAEARSKTDGKKRRSKSAAFLSDFRDLKPNDYVVHID
                     HGVARFGGLQTLDLGQRTGEFMLLYYADEAKLYVPVERLDLVQRYSSAEGHQPQLDRL
                     GGLGWQKTKAKAKRAMRDMADELLRLYAERKLVGGYAFAGDTPWQHEFEDGFAFVLTP
                     DQETAIEDVKKDMEEPVPMDRLLCGDVGYGKTEVAMRAAFKAVMEGKQAAVLTPTTVL
                     AYQHYDTFRTRFAPFPVKVELLSRFRTSKEQKEVVKRVETGEVDVIIGTHRMLSKDVK
                     FKDLGLVVVDEEQRFGVAHKERLKHLKKKVDVLTLSATPIPRTLNMSLTGMRDMSLIE
                     TPPRDRLAIQTQVVQFSDGVIKSAIDLELSRGGQVFFIHNRVETIETIAALVKRLVPQ
                     ARIAVGHGQMNEKEMEKVMLDFIDYKYDVLVATTIIENGIDIPRANTIIINRADNYGL
                     SQLYQLRGRVGRSNRRAYAYLLIPGEQELSPIARRRLAAIREFSDLGAGFRIAALDLE
                     LRGAGSLLGGEQSGHMEALGFDLYTTMLERTVAELRGEEVEDETSVALNLGVDVAIPE
                     DYISDMGQRLRTYKRVSSARDEATLTAIRTETEDRYGRVPVSLDRLFAYARLRRLAEE
                     LNLLSIDRTPDGVAIKFSEKARISPEKLAEYVSSHAGATFTPSGVLRLV"
     gene            complement(3583..4035)
                     /gene="rfaE2"
                     /locus_tag="VGD38_13685"
     CDS             complement(3583..4035)
                     /gene="rfaE2"
                     /locus_tag="VGD38_13685"
                     /inference="COORDINATES: protein motif:HMM:TIGR02199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase"
                     /protein_id="HEY0729123.1"
                     /translation="MDFMLAERERLRAANQRLVFTNGVFDLLHVGHVRYLRQARALGD
                     ALVVAINSDRSVQELKGPERPVFDEGERAEILAALRDVDYVVVFDDISPRATIKSLLP
                     DVLVKGGDYQLDEIHGREEVEAAGGRVISLPFVPGASTTSVLEKMKRK"
BASE COUNT          812 a         1290 c         1145 g          867 t
ORIGIN      
        1 aaaccaggcg caaaacaccg cttggtgtga acgtcgcgcc tgcatgcgaa ctcacgtatt
       61 ccgccagttt ttccggcgaa atacgcgctt tttcactaaa ttttatggcc acgccgtccg
      121 gtgtccggtc gatggacaac aggttcaatt cctcagccaa acgccgcaac cgcgcatacg
      181 caaataaacg atccagcgac accggaacac gcccgtaacg gtcctcggtt tccgtccgga
      241 tagccgtcag cgtggcttcg tcgcgggccg aggaaacgcg tttgtacgtc cgcaaccgct
      301 gccccatgtc cgaaatgtaa tcttccggaa tggccacatc cactcccaga tttaatgcaa
      361 cgctggtttc atcttcgacc tcttcaccgc gcaattccgc gacggtacgt tcgagcatcg
      421 tggtgtaaag atcgaacccg agcgcctcca tgtggcccga ctgttcgccc cccaaaaggc
      481 ttcccgcccc ccgcagttcc aaatcgaggg ccgctatgcg aaatcccgct cccaggtccg
      541 aaaactcacg aattgctgct aaacgacggc gagcgatggg tgaaagttcc tgctcgcccg
      601 gtatcagaag ataggcgtaa gcgcgccggt ttgaacgccc gacccgcccg cgcagttgat
      661 aaagctgaga aagaccgtaa ttatcggcgc gatttatgat gatggtgttt gcgcgcggga
      721 tgtctattcc gttctcgatg atggtggttg caacgagaac gtcatacttg tagtcgatga
      781 agtcgagcat caccttctcc atctctttct cgttcatctg gccgtgcccg acggcgatac
      841 gcgcctgcgg gaccagccgt ttgacgagcg ccgcgatggt ctcgatcgtc tccacgcggt
      901 tgtggatgaa gaacacctgg ccgccgcgcg agagttcgag atcgatggcc gacttgatga
      961 cgccgtcgga aaactgcacg acctgcgttt gaatcgcgag ccggtcgcgc ggcggcgtct
     1021 cgatcaacga catgtcgcgc atgcctgtga gcgacatgtt tagcgtgcgt ggaatcggcg
     1081 tggcggagag tgtcagcacg tccactttct tcttcagatg tttgagacgc tctttgtgag
     1141 cgacgccgaa gcgttgctct tcgtcgacaa ccacgagccc gaggtctttg aacttcacgt
     1201 cttttgacag catccggtgc gtgccgatga tcacgtccac ttcgcccgtt tcgactcgct
     1261 tcacgacttc cttctgttct tttgaagtgc ggaaacgcga caacagttca acctttaccg
     1321 ggaacggtgc gaagcgcgtg cggaacgtgt cgtagtgttg ataggcgaga accgttgtcg
     1381 gcgtaagtac cgcggcttgt ttgccttcca tcactgcttt gaacgccgcg cgcatcgcga
     1441 cttccgtttt gccgtaaccg acatcgccgc aaagcaggcg gtccatcggc acgggctctt
     1501 ccatgtcttt cttcacgtct tcgatcgcgg tttcctgatc gggcgtgagc acgaaagcaa
     1561 atccgtcttc aaactcgtgc tgccacggcg tgtcgccggc gaatgcgtaa ccgccgacga
     1621 gtttgcgctc ggcgtagaga cgcaggagtt cgtcggccat gtcgcgcatg gcgcgtttgg
     1681 ctttggcttt ggttttctgc caacccaagc ccccgagccg atcgagttgc ggctgatgac
     1741 cttcggcgct cgagtaacgc tggaccagat cgaggcgttc gacgggaacg tagagctttg
     1801 cttcgtcggc gtagtaaagc agcatgaact cgccggtgcg ttggcccagg tcgagtgttt
     1861 gcaaaccgcc gaaacgtgcg acgccgtgat cgatgtggac gacgtaatcg tttggcttca
     1921 gatccctgaa atccgataag aacgccgctg acttcgaacg ccgcttcttt ccatccgttt
     1981 tcgatctggc ttcggcggga ccgcgccgct cgaccgtatc agcgatctcg tcaaaaacgt
     2041 ctgactcaac gtgaacaatc aaccacgact tgggtaactc gaaaccactg ctcaaacgtc
     2101 cgacagtcac cacgaccgca ctcttgtcag cgtctgaact ctcacccgtc aacgccaggc
     2161 gagcgccgat ctgatactca ctaagaatct ccgacatgcg ttccgccacg ccgagactcg
     2221 gcatcacgaa cagcaccgtc tcgttttctt cagcggcgcg cttaacgtcc gcggcgagat
     2281 ccgagatgcg gccgtgataa cgcatcgccg actgcgcctg ccattcgact tcaaacgccg
     2341 cttcgacaac cggaaacaca aacgccggac gccgcgcttc gcgctcgcgg ccgagttgaa
     2401 ccgtgggcgc ctcggcgtcg agcgcgagat tcatatccgt ttccgctgcc gcacggccaa
     2461 gcgtgcgcag ttcaatccgc tgtcgttgtt cgattaatcc gcggagttct tcgtccgtga
     2521 ggaacagttc ttccggccgc aacgcgatgt cgtcggcttg atcgatctcg cgataacgat
     2581 ccgcgagccg ttcgtaaaac tcgctcagat acgactcgat gccgccgggt tcatcgacta
     2641 ccaaaaccgc gtcgccgaga tgatcgaaaa cagtcgaggt gcagtccatc gagatcggaa
     2701 tcaaccactc ccagcccgcg aatggttcgc cttcgtcggc aaacgccgtt cgatcacgca
     2761 acgagcgcgc gaagcgttcg tcgttccaac gctcgcgcgc ggcttcgctc caaagttgaa
     2821 agtcgagtgc ggtcgcccag aactcgcgca tcggcggcac ttcaaccgcg cgaatctgac
     2881 cggtcgagag ttggttctcc ggatcgaact cacgcagcga gtcgaccgtg tcgccgaaaa
     2941 attccaaacg caccggcgct tcgcggcccg gcggccagat gtcgacgatg ccgccacgca
     3001 acgaaaattc tccgacgttc gtcaccggat cttcgcgcat gtaaccggtg gcgatcagtt
     3061 tctcgacaag ttcttcgggc gagtgatctt cgtcgcgtat caacacggtg cccgcgcgcg
     3121 cgaccgcggc tggtccaact gtcttgcgag cgagtgcgcg cgcggtgagc agtacgaagc
     3181 tcggcctctg gcgttgcaaa cgccagagtg cgagcgcgcg gcgttcgagt gtttgtgcgt
     3241 gcggcgagat gccggcgtaa ggatcggttt cggaagcagg caacacgagc acttcgttgc
     3301 cggcggtttc cgcgccggcg agcgcggcgt accagaagcg caggtcctgt tcccacggct
     3361 cgagatcgcg cgtcgcttgc gagacgaccg cgaatgtttt cccggtttcg cgttgcaatg
     3421 ccgcgaccgc aagcgcgcgt gcggaaccgg cgacgagccc gccgatcgag atcacgcgcg
     3481 cgttcgcgcg cacctcggcc atgagttgct gatactcacg tgtttccgtg acctgccgca
     3541 gcgcctgctg caacgtggtg gtaatccctg aaatctgtga actcacttgc gtttcatttt
     3601 ttccaacacg gatgtcgtcg aagcgcccgg tacaaagggc aaagagatca ctctgcctcc
     3661 cgcggcttca acttcttcac gtccgtgtat ctcgtcaagc tggtaatcgc cgcccttgac
     3721 caatacgtca ggcagcagac ttttgatcgt ggcgcgcggt gaaatgtcgt cgaacacgac
     3781 gacgtaatcg acgtcgcgca acgcggccag aatctcggcg cgctcgcctt cgtcgaacac
     3841 cggccgctcc ggccctttca actcctgcac gctgcggtcg ctgttgatgg ccaccacgag
     3901 cgcgtcgccg agcgcgcgcg cctgccgcag gtaacgcaca tgaccgacgt gtaacaaatc
     3961 aaaaactcca ttcgtaaaca ccagccgctg gtttgcggca cgcagacgct cacgctccgc
     4021 gagcataaaa tccatactta acattttggc tttcatccta agcctagaat ctagcataat
     4081 cgtcgcttta ctctggagac cgcatcttgt cact
//
LOCUS       DASWTX010000907         1529 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_35172, whole genome shotgun sequence.
ACCESSION   DASWTX010000907 DASWTX010000000
VERSION     DASWTX010000907.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1529
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35172"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..362
                     /locus_tag="VGD38_13690"
     CDS             <1..362
                     /locus_tag="VGD38_13690"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0729124.1"
                     /translation="LRRAQPVESTTSARETLRVGDIEMDSNTRNVRRSGEVVELTGVE
                     YDLLEILLRSAGQIVKREDLVKEVLGRELSPFDRSIDMHVSNLRKKLGHQLNGLERIK
                     TIRGVGYIYGATAERPE"
     gene            359..>1529
                     /locus_tag="VGD38_13695"
     CDS             359..>1529
                     /locus_tag="VGD38_13695"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HEY0729125.1"
                     /translation="MKNPFRSLYLKIFIWFWVAMIIINVATFAIFALTRPTPIRRSWR
                     DLTQVGPNAQRAAEIYEQSGAAALTSALETTEKSSGVSATFFDENGKELSGRTAPAGA
                     NELIARAFESREIEFNFAGRDTLVARPVVSSKGQRYMYVAHIPRPPFQQTLQPLLLRL
                     LVILVIGGIFCFWLARYLTTPLLKLRTTTNELAEGTLGARVADKLTKRRDEVGQLGRD
                     FNGMAERLESMVKAQQRLLGDISHELRSPLARLGVALGLARQRSGSEANGALDRIERE
                     SDNLNEMISQLLELTRLESGTDVRKRTAVDLASLVRDVAEDADYEARSVNRSVQVVWT
                     EKCTINGIEDLLRSAVENVVRNAVRFTPEGTAVEVALQRQNGGGGPCAVISVRDHG"
BASE COUNT          322 a          435 c          465 g          307 t
ORIGIN      
        1 ttttgcggcg cgcccagccc gttgagtcaa ctacttcggc gcgcgaaacc ctccgtgtgg
       61 gtgatatcga aatggacagt aacacgcgca acgtccgccg ctcgggagaa gtagttgaac
      121 tcaccggagt tgaatatgac ctgctcgaga tactgctgcg cagcgcaggt cagatcgtca
      181 aaagggaaga tttggtgaaa gaagttttgg gacgcgaact ttcaccgttc gatcgcagca
      241 tcgatatgca cgtcagtaac ctgcgcaaga agttgggcca ccagctcaac ggtctcgaac
      301 gaatcaagac cattcgcggc gttggttaca tctacggcgc aacggcagaa agaccagaat
      361 gaagaacccg tttcgcagtc tttatctgaa aattttcatc tggttctggg tggcgatgat
      421 cattatcaac gtcgccacgt ttgccatctt tgcgctcacg cgtccgacgc cgatccggcg
      481 ctcgtggcgc gacctcacgc aggttggtcc aaatgcccag cgggctgccg agatctacga
      541 acaatcaggc gcggctgctt taacgtcagc gctggaaacg actgaaaagt cttccggtgt
      601 cagtgccacg ttcttcgatg agaacggaaa agagctttcc ggacgaaccg cgcctgccgg
      661 tgcgaatgaa ttgatcgcgc gggccttcga gagccgcgag atcgaattca acttcgccgg
      721 gcgcgacacg ctcgtcgcgc gtccggtcgt gagctcgaag ggccagcgtt acatgtacgt
      781 ggcccatatt ccgcgtccgc cgtttcaaca gacactgcag ccactgctcc tgcgcctgct
      841 tgtgatcctc gtgatcggcg gcatcttctg tttctggctc gcacgttatc tcacgacacc
      901 gctcttgaaa ctccgcacga cgacgaacga gctcgcggaa ggcactctcg gtgcgcgcgt
      961 cgcggacaaa ctgaccaaac gccgcgatga agtcggacag ctcggccgcg atttcaacgg
     1021 catggctgag cgtttggagt cgatggtcaa agcgcagcaa cgtctgctcg gcgacatttc
     1081 acacgagctg cgttcgccgc ttgcgcgtct tggcgtcgcg ctcggtttgg cgcggcaacg
     1141 ttcgggctcg gaagcgaacg gcgcgctcga tcgtattgaa cgtgagtcag acaacttgaa
     1201 cgagatgatc agtcagcttt tggagttgac gcgtctcgaa agcggcaccg acgtccgcaa
     1261 acgaacggcc gtcgatcttg cttcgctcgt gcgcgacgtc gccgaagacg ccgattacga
     1321 agcgcgcagc gtgaatcgat cggtgcaagt ggtttggacg gagaaatgca cgatcaacgg
     1381 tatcgaagac ttgctgcgga gcgcggttga gaacgtcgtg cgcaatgccg tgcgcttcac
     1441 gccggaagga acggcggtcg aggttgcgtt gcagcggcag aacggcggcg gcggaccgtg
     1501 cgccgtgatc agtgttcgcg accatggaa
//
LOCUS       DASWTX010000908         2258 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_166689, whole genome shotgun sequence.
ACCESSION   DASWTX010000908 DASWTX010000000
VERSION     DASWTX010000908.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2258)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2258)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2258
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166689"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1056
                     /locus_tag="VGD38_13700"
     CDS             <1..1056
                     /locus_tag="VGD38_13700"
                     /inference="COORDINATES: protein motif:HMM:NF019229.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HEY0729126.1"
                     /translation="FENTTARAGMNDPAGKTLGVALLDYDDDGWMDLFVANDTEPNKL
                     YRNNHNGTFTDNAVIAGVAFSDAGTPRAGMGVDAADYDGSGRQSVVIGNFTNESIALY
                     HNDGTGLFTDDAPASGIGKMSAQSLTFAVFFFDYNLDGMLDIFAANGHVSDDISVVQP
                     TVKYAQPPHLFLNRGKKKFEEVTAKLGRALNRAIVGRGAAYGDFDNDGDLDLLITTNN
                     GAARLLRNDNANQNDLLRVRTVGAKSNRDGIGAKVVVKTSKGRTVFAMVRTGSSYCSQ
                     SELPLTIGLGKPEEGTTLTLEISWPSGVKDKISDLKPNQSLVVQETKGVIASEPIVFV
                     RTPAPQPSPQPTTTATK"
     gene            complement(1149..1781)
                     /locus_tag="VGD38_13705"
     CDS             complement(1149..1781)
                     /locus_tag="VGD38_13705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729127.1"
                     /translation="MHNASKYSLAIPLLLFLTGTALAQRVPTGGPPADRRNADRVRQQ
                     EMSNREWQLRNFGNASTLPKDRRQVEALLAQTEEDFNRILTLHNEFARLLTASKPIEY
                     DFISDASAEIKKRATRLQSTLNLHQLPAETPVVEKTEEMDDAQLKDALFRMCKQIKSF
                     VTNPVIAEPNTVDAQQLTNARRDLESLIQLSGHIKKEAGKKHKTPTLVVN"
     gene            1902..>2258
                     /locus_tag="VGD38_13710"
     CDS             1902..>2258
                     /locus_tag="VGD38_13710"
                     /inference="COORDINATES: protein motif:HMM:NF024804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY0729128.1"
                     /translation="MRRIDLKKANVARSNTIRDINRQIVLNYVRERGPISRAEIAHET
                     ALQRSTVSLIVEELRVDGLIEEVSGESTGGRPPILLSLRTADAVAIGVDVGTNKTIVA
                     TSDLAGRVMEEESFDTN"
BASE COUNT          486 a          625 c          664 g          483 t
ORIGIN      
        1 tttgagaaca ccaccgcgcg cgctggcatg aacgatcccg cgggaaaaac gttgggtgtt
       61 gctttgctcg attacgacga cgacggttgg atggatcttt tcgtcgcgaa tgacaccgaa
      121 ccgaacaagc tctatcgcaa caaccacaac ggcaccttca ccgacaacgc cgtgatcgcg
      181 ggtgttgcgt tcagcgacgc cggaacgccg cgcgcgggaa tgggcgtcga tgcggctgat
      241 tatgacggct cgggccggca gagcgtcgtg atcggaaact tcacgaatga gagcatcgcg
      301 ctctatcaca acgacggtac gggtttgttt acggacgacg caccggcttc gggcatcggc
      361 aagatgtcgg cgcagtcgct cacgtttgcg gttttctttt tcgactacaa cctcgacggc
      421 atgctcgata ttttcgcggc gaacggacac gtttccgacg acatcagcgt cgtgcagccg
      481 acggtgaagt acgcgcagcc gccgcatctg tttctgaaca ggggcaagaa gaagtttgaa
      541 gaagtgactg cgaaactcgg ccgcgcgttg aaccgcgcga ttgtcgggcg cggtgctgcg
      601 tatggagatt tcgataacga cggcgatctc gatctgctga tcacgaccaa caacggcgcc
      661 gcgcgtttgc tgcgtaacga caacgctaac cagaacgatc tcctgcgcgt gcgaactgtc
      721 ggggcgaagt cgaaccgcga cgggatcgga gcgaaggttg tagtgaagac ctcgaaaggg
      781 cgcaccgtgt tcgcgatggt gcgcacgggc tcgagttact gttcgcagtc ggagctgccg
      841 ctaacgattg gtttagggaa acctgaagaa ggtacgaccc tcactttaga gatcagttgg
      901 cccagcggtg tgaaggacaa gatctcagac ttgaagccta accagtcgct cgtcgtgcag
      961 gaaaccaaag gcgtgatcgc gtcggagccg atcgtctttg tcagaacgcc ggccccgcaa
     1021 ccatctccac aacctacgac cacagctaca aagtaaggct gtgttttgag ttcaagcttt
     1081 agcttgcacg atacggtagt ggacagccag cctaaaggct gaactcaaaa cgcgcgtcct
     1141 cgccaatgtt agttaacgac cagcgtggga gttttgtgtt tcttgccggc ttcctttttg
     1201 atgtgcccgc ttagctgaat caaactttcc aaatcgcgcc gcgcgtttgt gagctgctgc
     1261 gcgtccacag tgttcggttc cgcaatcacc gggttggtca caaaactctt gatctgttta
     1321 cacatccgaa acagcgcgtc cttcaactgc gcgtcgtcca tctcctccgt cttctcgaca
     1381 acgggcgttt cagccggcaa ctgatgcagg ttgagtgtcg attgcagacg cgtcgcgcgt
     1441 ttcttgatct cggcgctggc gtcggagatg aagtcgtact cgatcggttt cgaggccgtg
     1501 agcaggcgcg cgaattcgtt gtgcagcgtc agaatgcgat tgaagtcttc ttccgtctgc
     1561 gccagcagtg cttcgacctg gcgccgatcc ttcggcagcg tcgacgcatt gccgaaattc
     1621 ctcaactgcc actcgcgatt gctcatctcc tgctgccgaa cgcgatcggc gttacggcga
     1681 tcggcaggcg gaccacctgt cggtacgcgc tgtgcgagag cagtgccggt caggaacaac
     1741 aggaggggga tcgctaatga gtatttgctt gcattatgca tagcaggcct cccggttttt
     1801 tgcgacgtag tatagcttag ttgacgcgga gttgacatgg attaaatgac gtggaaggtg
     1861 acacggctta gagagatgaa ttattctctg cggctggcaa gatgcgacga atagatctta
     1921 agaaggcaaa cgtagcccgc tcaaacacga ttcgcgatat caatcgacag atcgttttga
     1981 actacgtgcg ggaacgtggc ccgatctctc gcgctgaaat cgctcacgaa acagcgctgc
     2041 aacgttccac tgtctcgctc atcgtcgagg agttgcgcgt tgacggcctg atcgaagagg
     2101 tcagcggaga atcgaccggc ggccgcccgc caatcctgct ctcgctgcgt accgccgacg
     2161 ccgtggcgat cggcgtcgac gtgggaacca acaaaaccat cgtcgctacc agcgatctcg
     2221 ccggccgcgt gatggaagaa gagagtttcg acactaac
//
LOCUS       DASWTX010000909         3396 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_423150, whole genome shotgun sequence.
ACCESSION   DASWTX010000909 DASWTX010000000
VERSION     DASWTX010000909.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3396
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423150"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..859)
                     /locus_tag="VGD38_13715"
     CDS             complement(<1..859)
                     /locus_tag="VGD38_13715"
                     /inference="COORDINATES: protein motif:HMM:NF014805.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729129.1"
                     /translation="MPRRTDIHKILIIGSGPIVIGQACEFDYSGTQACKALRQEGYEI
                     VLVNSNPATIMTDPETADITYIEPLNVASLTEIIRKERPDALLPTVGGQTALNLAIAL
                     ADTGVLEEYGVEMIGANRDAIKVAENRLLFKQAMDEEGLQMPRGGFAKSWEEAREIVA
                     TTNYPAIIRPSFTLGGTGGGTAYNPEEFEEIVRGGLAASPIHEVLIEESILGWKEFEL
                     EVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDREYQLMRDLAIRVIRKVG
                     VETGGSNIQF"
     gene            complement(860..1576)
                     /locus_tag="VGD38_13720"
     CDS             complement(860..1576)
                     /locus_tag="VGD38_13720"
                     /inference="COORDINATES: protein motif:HMM:NF012529.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0729130.1"
                     /translation="MIDESQLPKKENTEVCEECFGTGTKIDPVKGAIPCPCRRNERSR
                     KLLAAARIPRRYERCAFANFISNPGTSQDNALYHAHKFANEYPAVDRGLLFMGPAGVG
                     KTHLAVSIIRNLIDKGFAGLFYEFGSLLKQIQDSYNPISKSSELKVLAPVYEADVLVL
                     DELGATVPTDWVRDTMYQIINKRYNDNKLTIFTTNYLDKGNELEERITYRLRSRLYEM
                     CTNVVIDGEDYRRRRRPDIS"
     gene            1705..2124
                     /locus_tag="VGD38_13725"
     CDS             1705..2124
                     /locus_tag="VGD38_13725"
                     /inference="COORDINATES: protein motif:HMM:NF042704.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-phosphate processing receiver
                     domain-containing protein"
                     /protein_id="HEY0729131.1"
                     /translation="MTSVRAERHPIRVFLLDDDKRRHHWFTSRFKGDFVDIAENVVEA
                     QRLLSASSYDAIFLDHDLHPEHYNADSTDDERTGYAIAAWLCANPELQRASTILVHTR
                     NADGAMRMVGELRRAGRSADYVPFPLLAEKIKSYWQR"
     gene            complement(2574..>3396)
                     /locus_tag="VGD38_13730"
     CDS             complement(2574..>3396)
                     /locus_tag="VGD38_13730"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0729132.1"
                     /translation="DRLQQVVTNLLSNAVKFTPPGGRIEVRVDRPDTTVRLEVKDTGI
                     GIAPEHLPHIFERFRQVDSSNVRAHGGLGLGLAIVDYLVRQQGGIVSVESEGAGKGAT
                     FQVEFPLPSSELIASQEPSSIASSSSPHTLNASQVSADAKLKDLRILVVEDDVDTREL
                     VAALLVQHGAEVVAADSSATALPAVERDKPDLIISDIGMRGENGYEFISKVRSLDPDA
                     GGRIPAIALTAYAGSRDRRRALLAGFQMHLPKPVEPDDLLAMVLSLTFKPTAGHR"
BASE COUNT          680 a         1024 c          956 g          736 t
ORIGIN      
        1 cgaattgaat attcgatcca ccagtctcga cgccgacttt gcgaatcacg cgaatcgcga
       61 gatcgcgcat gagttgatac tcgcgatcgg tgagtgtttg cgcaggcgcg acggtgatcg
      121 agtcgccggt gtgcacaccc atcggatcga agttctcgat cgaacagatg atcacgacgt
      181 tgtccgcaag gtcgcgcatc acttcgagtt caaactcttt ccaaccgaga atcgactctt
      241 caatcaacac ttcgtgaatc ggcgaagccg ccaggccgcc gcgcacgatc tcttcaaact
      301 cttccgggtt gtaagcagtg ccgccgccgg tgccgccgag tgtgaacgac ggccggatga
      361 tcgctggata attcgtcgtc gcgacgatct cgcgcgcttc ttcccaagac ttcgcaaacc
      421 cgccgcgcgg catttgcagt ccctcttcgt ccatcgcctg cttgaacagc aaacgattct
      481 cggcaacctt gatcgcgtcg cggttcgcgc cgatcatctc gacgccgtat tcctcgagca
      541 cgcctgtgtc cgcgagcgcg atcgcgagat tgagcgcggt ttgtccgccg acagtcggca
      601 acagcgcatc cggacgttcc ttgcgaatga tctccgtgag cgaagcgacg ttcagcggtt
      661 cgatgtaggt gatgtcggcg gtttccggat cggtcatgat cgtcgccggg ttggagttaa
      721 ccagcacgat ctcgtaaccc tcctgccgca acgccttgca ggcctgggtg ccggaataat
      781 caaactcaca cgcctgcccg atcacgatcg ggcctgagcc gatgattagg attttgtgaa
      841 tgtcagtgcg tctgggcatc tagctaatgt ccggtctgcg tcgccgccgg tagtcttctc
      901 catcaatcac cacgttcgtg cacatttcgt aaaggcggct gcgcaagcga taagtgatgc
      961 gttcctcgag ttcgttgcct ttgtcgagat agttggtcgt gaaaatcgtg agcttgttgt
     1021 cgttgtaacg cttgttgatg atctggtaca tcgtgtcgcg cacccagtcg gtgggcactg
     1081 tcgcgcccag ttcgtccagg acgagcacgt ccgcctcata aactggcgcg agcactttga
     1141 gctctgatga tttcgagatg ggattgtatg aatcctggat ctgtttgagc agtgaaccga
     1201 attcgtaaaa caggccggcg aaacctttgt cgatcaaatt tctgataatc gagacggcga
     1261 gatgcgtctt gccgacgccg gcgggcccca tgaacagcaa gccgcgatcg actgcggggt
     1321 actcgttcgc gaatttgtgc gcgtgataga gggcgttgtc ctgcgaagtg ccgggattgc
     1381 tgatgaaatt ggcaaacgca cacctttcat agcggcgggg gatgcgtgcg gcggccagca
     1441 gcttgcggga acgttcgttt cggcggcagg gacagggaat cgctcccttt accgggtcga
     1501 ttttagtccc ggtgccgaag cactcttcgc aaacttctgt attctccttt ttggggagtt
     1561 ggctttcgtc gatcatctgc tcaaaggtta acccttggga tgatacctta taatgccttt
     1621 cagacagcaa caccgtctaa gttttacgag gagacactca gaacttatat gaatttgttg
     1681 cagtcgttac tcagaaaact cggattgacc agcgtccggg ctgagcgtca tccgattcgc
     1741 gtctttttac tggacgatga caaacgacga caccactggt ttacgtcccg cttcaaggga
     1801 gacttcgtcg acatcgcgga aaacgttgtc gaggcgcagc ggctgttgag cgcgagctct
     1861 tacgacgcga tcttcctgga ccacgatctc catcccgaac actacaacgc cgactcaacc
     1921 gacgacgaac gcaccggtta cgccatcgcg gcgtggctct gcgcgaatcc cgaactccag
     1981 cgcgcctcca ccatcctcgt ccacacccgc aacgccgacg gcgccatgcg catggtaggc
     2041 gaactccgcc gcgccggacg cagtgcggat tacgtcccgt ttccgttatt ggctgagaag
     2101 attaaaagct actggcagcg ctaagaaggc aactctagtc tcgcggctcc gccgccggat
     2161 gtgacctagc ggccagtttc ggttcgcggc tccgccgccc gatgtcacct agcagccact
     2221 ttcgtttcgc ggctccgccg cccgatgtga cctagcggcc agtttcggtt cgcggctccg
     2281 ccgcctgatg tgaggcgagg ctctgcctcg ccgtcgagtt ggttgtaaga agttgggcta
     2341 tgcccccggt acgggctttg ccctacgatc ttgggccata ggccgtacca gggccatagc
     2401 cccatttttt cttttagtcg cctccggcga ggcgtagcct cgcctcacat ccggcggcgg
     2461 agccgcgaaa cgaaactgac cgtcacctca catccggcgg cggagccgcg aggtagcagt
     2521 cgcagcacca taatcaccaa acgcactcgt gcgaacggga gtgcttgaac gtctcaacgg
     2581 tgacccgccg tcggcttgaa cgtgagactc aggaccatcg cgagcaggtc gtcgggttcg
     2641 acgggcttgg ggaggtgcat ttgaaagcca gccaataagg cacggcgccg atcgcgcgag
     2701 ccggcgtagg cggtcaacgc gatcgccggg atgcggccgc cggcgtccgg gtccagcgac
     2761 ctgaccttac tgataaactc atatccgttt tcaccacgca ttccgatatc gctgatgatg
     2821 agatccggct tatcgcgctc caccgccggt aaagcggtgg cgctcgagtc ggcggcaaca
     2881 acttccgcac catgctgcac caacagcgcc gcgaccaatt cgcgcgtgtc aacgtcgtct
     2941 tcaaccacca gaatccgcag atctttcaac ttcgcatctg ccgacacttg tgacgcgttc
     3001 aacgtatgcg gtgaactcga gctcgcgatg gaagacggct cctgagacgc gatcaactcc
     3061 gaagacggca gcggaaactc aacctggaaa gtcgcgccct taccagcgcc ctcactctca
     3121 acagacacaa tcccaccctg ctgccgcacc aggtaatcga caatcgccaa tcccaatcca
     3181 aggccgccgt gcgcgcgcac gttggacgaa tcaacttgtc tgaagcgttc aaaaatatgc
     3241 ggcaagtgtt cgggcgcgat gccgatgccg gtgtctttca cttcgagtcg aacggttgtg
     3301 tccggtcgat cgacacgaac ttcgatgcga cccccaggcg gcgtgaattt aactgcgttt
     3361 gagagcaggt ttgttactac ctgttgcaga cgatcc
//
LOCUS       DASWTX010000910         1966 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_35192, whole genome shotgun sequence.
ACCESSION   DASWTX010000910 DASWTX010000000
VERSION     DASWTX010000910.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1966
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35192"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..378
                     /locus_tag="VGD38_13735"
     CDS             <1..378
                     /locus_tag="VGD38_13735"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: protein motif:HMM:NF013327.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEY0729133.1"
                     /translation="MGADAGAYYVGRAFGKKKLAPSISPGKSWEGVVGGVAAAILMAG
                     VAHYWFFRELPLKYALPLAVVMTVVGIFGDLAESALKRGAGAKDAATILPGHGGLLDR
                     LDSLLFNAPLIYYFARFYFHGLG"
     gene            378..803
                     /locus_tag="VGD38_13740"
     CDS             378..803
                     /locus_tag="VGD38_13740"
                     /inference="COORDINATES: protein motif:HMM:NF020279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase assembly factor Coa1 family
                     protein"
                     /protein_id="HEY0729134.1"
                     /translation="MTTKKIVLIVIGVVVVLALLAAVFVGGIVGVVLYQVGNSEAAAQ
                     AKDFLRTSDKLTDDIGDVKDFGTIITGNVNVANNNGQATLHLKVIGERKTVNASVDLI
                     YTNGSAWRVSAASYVNSSGQTIDLLNPYDSKILTPVLTA"
     gene            839..>1966
                     /locus_tag="VGD38_13745"
     CDS             839..>1966
                     /locus_tag="VGD38_13745"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: protein motif:HMM:NF009114.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070402 - NADPH binding [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HEY0729135.1"
                     /translation="MGSTGSIGCNTLRVIESLAAPRMRVIALGAGSNVERLADQIATH
                     LPELVSVESEQAAHELRAKLFERDVDLPRIVTGETGLVEVATHPEADCVVSATVGAVG
                     FVPTLRALESGKRVALANKETLVMAGELMTRAAKQSGAQLLPIDSEHNALHQCLRGER
                     REEVRRIILTASGGPFRTKNRDEMKQASVSEAMRHPTWSMGAKITIDSATLMNKGLEV
                     IEAHWLFGFGPEEIDILVHPESVVHSMIELIDGSVIAQMGITDMRHAIQYALTYPERH
                     SCQLPPLDLTAISKLHFEAPDLERFPCIPLAYRALSEGGTLPAAMNAANEEAVSAFIA
                     QQISLTEIPQVIETVMNNHVNQPAESIETILSADHCARVAAN"
BASE COUNT          402 a          526 c          616 g          422 t
ORIGIN      
        1 atgggcgctg acgccggcgc gtactatgtt gggcgcgcgt ttgggaaaaa gaaactggcg
       61 ccgtcgatca gtccggggaa gtcgtgggaa ggtgttgtcg gtggagttgc ggcggcgatc
      121 ttgatggccg gcgtcgcgca ttactggttc ttccgtgagt tgccgctgaa gtacgcgctg
      181 ccgctcgcgg tcgtgatgac ggttgtgggt atcttcggag atctcgcaga gagcgcgttg
      241 aagcgcggcg cgggtgcaaa agacgcggcg actatcctgc cgggtcatgg cggactactc
      301 gatcggctcg atagcttgct cttcaatgcg ccactcatct actatttcgc tcgcttctat
      361 ttccatggat taggctgatg accacgaaga aaatcgtgtt gatagttatc ggcgtcgtgg
      421 ttgtgctggc gctattggct gccgtctttg taggtggaat tgttggcgtc gtgctttacc
      481 aggtcggaaa tagcgaagcg gcggcacagg cgaaggactt tttgcgcacg agcgataaac
      541 tgacggacga catcggcgat gtcaaggatt tcggcacgat catcaccggc aacgtcaacg
      601 tcgcgaacaa taacggccag gcgaccttgc atttgaaggt catcggcgag cgcaagacag
      661 tcaacgcttc ggtcgatctg atttacacta atggcagtgc ctggcgcgtg agcgcagcgt
      721 cttacgtcaa ctcgtcaggc cagaccatag atctcctgaa cccctacgat tcgaaaattc
      781 ttacccccgt tctaactgct tgaccacttc gggattggac agtacaggcg ttgctatatt
      841 gggttcgacc ggctcgatcg gatgcaacac tctgcgtgtg atcgaatcgt tggccgcgcc
      901 gcgtatgcgt gtcatcgcgc tcggcgcggg aagcaatgtc gagcggctcg cggatcagat
      961 cgcgacgcac ttgccggagc tggtttcggt tgaaagcgaa caagcggcgc acgaactgcg
     1021 cgcgaagttg tttgaaagag acgtcgatct gccgcgcatc gtgacgggtg aaacaggttt
     1081 ggtggaagtc gcgacgcatc cggaagcgga ttgtgtcgtg tccgcgactg tcggcgccgt
     1141 tgggtttgtg ccgacgctgc gagcgctcga aagcggcaag cgcgttgcgc tcgcgaataa
     1201 ggaaacactt gtgatggccg gcgagctgat gacgcgcgca gccaaacaat caggcgcgca
     1261 gttgttgccg atcgattcgg agcacaacgc gctgcaccag tgtctgcgtg gcgaacgccg
     1321 cgaagaagtg cggcgcatta ttctcaccgc ttcgggcgga ccattccgca ccaagaatcg
     1381 cgacgagatg aaacaagcga gcgtgtcgga agcgatgcgg cacccgacgt ggagcatggg
     1441 cgccaagatc acgatcgact ccgcgacgtt gatgaacaaa gggctcgaag tcatcgaagc
     1501 gcactggctg tttggttttg gtcccgaaga gatcgacatc ctcgttcatc cggagtcggt
     1561 cgtacactcg atgatcgaac tgatcgacgg ttcggtgatc gcgcaaatgg gcatcactga
     1621 catgcgccac gcgattcagt atgcgttgac atatcccgag cggcactcgt gccagttgcc
     1681 gccgctggat ctgacggcga tttcaaagtt gcacttcgaa gcgccggatt tggagcgttt
     1741 tccgtgtatt cccctcgcgt atcgcgcgct gagcgagggc ggcacgcttc cggccgcgat
     1801 gaatgcggct aacgaggaag ccgttagcgc ctttattgcc cagcaaattt ccctgactga
     1861 aattccccaa gtgatcgaga cggtgatgaa taatcacgtc aatcagcccg ctgagagcat
     1921 cgaaaccatt ctctctgcgg accattgcgc gcgtgtcgcc gcaaac
//
LOCUS       DASWTX010000911         5892 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_385909, whole genome shotgun sequence.
ACCESSION   DASWTX010000911 DASWTX010000000
VERSION     DASWTX010000911.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5892)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5892
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_385909"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2895
                     /locus_tag="VGD38_13750"
     CDS             <1..2895
                     /locus_tag="VGD38_13750"
                     /inference="COORDINATES: protein motif:HMM:NF020083.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729136.1"
                     /translation="GGAIPDTADYAVVLEPTDLVIGSVNEDFAIESLQGDIFQLGNTS
                     WRVLRVEQGKVRVEDAHGQPPSIPFWLGEAPARSHELSVSVSRLREEVASRINTEAVD
                     LGAAIEWLTGEVGLSRSAAEQIVEYLAGAKIVLGVMPSQDNLVLERFFDDSGSMQLVL
                     HSPFGSRLNRAWGLALRKRFCRKFNFELQAAATEDAIVLSLGPTHSFPLDDVFHYLNS
                     KSVRQLLCQALLDAPMWNIRWRWNVTRSLAVLRRRGGKKIPAQLQRMDAEDLLTAIFP
                     DQVACFENLPAGEREIPSHPLVDQTVKDCLEEAMDIDGLERLLAAIERNEKNLFACDV
                     IEASPLSQEILNARPYAYLDDAPLEERRTRAVFQRRWLDPETASDMGKLDQAAIDRVR
                     EEVWPEPRNADELHDALVELGFVTAQEGSAWQEFFAELKRDRRAAVLAGQKQLWVAAE
                     RLPQLNAIFASATLEPPIAAPESVARTAWTFEDALVEIIRGRLEGLGPVTVEQLVSQS
                     GLNKLEIETALLKLEAEGFVIRGRFTPGNTETEWCARRLLARIHSYTLNRLRQEIEPV
                     SSADFIRFLLAWQKLAPEHQMEGPESVRAIIEQLEGFEAPAAAWEGELLPSRLVEYDP
                     AWLDALCLSGEVVWARLTPPVRSANDGNADRPRGAGPVRNTPIALLRRKNFALWSSVF
                     PPLQATAGNEFSTTTQVVYDYLKHRGASFFTDIVESTGLLRSQVEESLAELVANGVVV
                     SDSFTGLRALLTPGSRKTRAAATRKHRQPVYEMASAGRWSIIHRENGNGATANRNNQN
                     PIDQEKAEEIAWTLLRRYGVVFKRLLEREGMNLPWRVLLRIYHRLEARGEIRGGRFVG
                     GISGEQFALPDAVGMLRAIRREGAQDSMISVSAADPLNLVGIIIPGNRITAHTSNRVL
                     YHDGAPIAALESGETHFLLELSRATEWKAKAALVRKATRPELRSYLQRPA"
     gene            3036..3539
                     /locus_tag="VGD38_13755"
     CDS             3036..3539
                     /locus_tag="VGD38_13755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729137.1"
                     /translation="MKQIYSSKKVGGYILALFLILGFTAIASTSVQAQYRDDRYRRDR
                     DYRDDRYRRDRDYRDDRYRRDRDYRDDRYRGDRYSNYDVARQQGYSWGMNVGAADAQR
                     GQSYNPQRSRYWKNATQGYNSSYGNRGQYKQVFRDAFEQGYRDGWQRFAGDGRRNNGR
                     WNNRWPY"
     gene            3630..3905
                     /locus_tag="VGD38_13760"
     CDS             3630..3905
                     /locus_tag="VGD38_13760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729138.1"
                     /translation="MRALAQQNSTVSFKLGVAPKRRPRLFPLVNRKIMVPSTEDFMRV
                     NNATVREGQAHRVWPPEVLRQFHMAEVVTNTNVQHYVLRDTSISPVR"
     gene            complement(3992..5755)
                     /locus_tag="VGD38_13765"
     CDS             complement(3992..5755)
                     /locus_tag="VGD38_13765"
                     /inference="COORDINATES: protein motif:HMM:NF013560.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M2 family metallopeptidase"
                     /protein_id="HEY0729139.1"
                     /translation="MSSCTDAPNATPTGPATADEAGKFLTDAEKRLLELAIGASRADW
                     IKSTYVTDDTEALAAAANERFIGATTELAEQGRPFESLNLSPEAKRKLLLLKLSLTLP
                     APRDPAERAELTKITASMEGDYGKGKFCPDGDKGKCFSLPELEQVIGTSRDPEELKRV
                     WVGWHQIAQPIRKDYVRFVELSNKGAKEMGFKDTGAMWRSKYDMEPDAFAAEMERLWQ
                     QVKPLYDSLYTFTRRKLSEKYGKEIVAEDKPIPAHLLGNMWAQTWGNIYPLLAPATSD
                     RGYDLTAILKARNTDAKQMVRYGEGFFTSLGFEPLPASFWERSMFTKPADREVVCHAS
                     AWDIDYEKDVRLKMCININEEDFSVVHHELGHNYYQMAYAGQPDLFRDGAIDAFHEAI
                     GDTVALSVTPPYLKQLGLIESVPDQSADIGFLLNRALDKVAFLPFGYLVDQWRWKVFS
                     GEVGPNDYNKAWWELREKYQGVAAPVARSESDFDPGAKYHVPANTPYARYFLAAILQF
                     QFHRALCREAGFNGPLYQCSIYGNKKAGEKLRAMLAMGTSRPWPDALKAMTGEEKMDA
                     TAIIDYFAPLKTWLDEQNAKK"
BASE COUNT         1214 a         1784 c         1691 g         1203 t
ORIGIN      
        1 ggcggcgcga tacccgacac agcggattac gcggtcgtgc tcgaacccac cgatctcgtg
       61 atcggctccg ttaacgaaga cttcgcgatc gagagtttgc agggcgacat ttttcagctc
      121 ggcaacacgt cgtggcgtgt gttgcgcgtc gagcagggca aggttcgagt tgaagacgct
      181 cacggccagc cgccgtcgat tccgttttgg ttgggcgagg cgcctgcgcg ttcacacgag
      241 ctgtcggtgt cagtgtcgcg tctgcgcgag gaagtcgcct caaggattaa cacggaagcc
      301 gtggatctcg gcgcagcgat tgaatggctc acaggggaag ttggattgtc ccgctccgcg
      361 gcggagcaga tcgttgagta cctcgcgggc gcgaagatcg ttttgggcgt gatgccctcg
      421 caggacaatc tcgtgctcga acggttcttc gacgacagcg gcagcatgca gctggtgctg
      481 cactcgccgt tcggcagccg tttgaatcga gcgtggggac tggcgctgcg caagcggttc
      541 tgccgcaagt tcaacttcga attacaagcc gccgcaacgg aagatgccat cgtcctgtcg
      601 cttggaccaa cgcacagctt tccgctcgac gacgttttcc attacctgaa ttcaaagtcg
      661 gtgcgccagt tgttgtgtca ggcgctgctc gacgcgccga tgtggaacat ccgctggcgc
      721 tggaacgtga cgcgttcgct cgccgtgctg cggcgtcgtg gtggcaagaa gatcccggcg
      781 cagttgcaac gcatggacgc ggaagatctg ctcaccgcga tttttcccga tcaggtggcg
      841 tgttttgaaa acctgccggc cggcgaacgc gagatcccgt cgcatccgct cgtcgatcaa
      901 accgtcaaag attgtctcga agaggcgatg gacatcgatg gtctcgagcg tctcctggct
      961 gccattgaac gcaacgaaaa gaacctcttt gcgtgcgatg tgatcgaggc ttcgccactg
     1021 tcgcaggaga ttctcaacgc ccgtccttac gcgtatctcg acgatgcgcc actcgaagag
     1081 cgccgcacac gtgctgtctt tcagcgccgc tggctcgatc ccgagacggc gagcgacatg
     1141 ggcaaactcg accaggccgc gatcgatcgc gtgcgtgaag aggtctggcc cgaaccgcgc
     1201 aacgccgatg aactccacga cgcgctggtt gagctcggct ttgtaacggc gcaagagggt
     1261 tctgcgtggc aggaattttt cgccgagttg aaacgggata ggcgcgccgc agtgctagcg
     1321 ggccaaaagc aattgtgggt tgccgcagag cgactgccac aattaaatgc gatttttgcg
     1381 agtgctacgc tcgaaccgcc gatcgccgct ccggaaagtg tggcaaggac ggcgtggact
     1441 ttcgaggacg ccctcgtcga gatcatccgt ggacgactcg agggtcttgg gccagttacg
     1501 gtcgagcagt tagtttcgca gtcgggtctc aacaagctcg agatcgaaac ggcgttactc
     1561 aagcttgaag ccgaaggctt cgtcattcgg ggacgcttca cgcccggcaa tactgaaacc
     1621 gagtggtgtg cgcgccgcct gctcgcacgc attcatagtt acactttgaa ccgtttgcgc
     1681 caggagatcg aaccggtctc cagcgccgac ttcatccgct tcctcttggc gtggcagaag
     1741 ctcgcgccgg aacatcagat ggaaggtccg gaaagcgtgc gggccatcat cgagcagttg
     1801 gaaggattcg aagcgcccgc cgcagcgtgg gaaggcgagc tcttgccgtc gcgcctcgtc
     1861 gaatacgatc cggcctggct agatgcgctc tgtttgtccg gcgaagtggt gtgggcaaga
     1921 ctgacgccgc cagtgcgttc cgcgaacgac ggcaatgccg atcgcccgcg tggcgccgga
     1981 cccgtgcgca acacgcccat cgcacttctg cggcgcaaga acttcgcttt gtggagctct
     2041 gtgtttccgc cactccaggc aacggccgga aatgaatttt ccactactac gcaagtcgtc
     2101 tacgactatc tcaaacatcg cggcgcttcg ttcttcacag acatcgtcga aagcactggc
     2161 ctcttgcgca gtcaggttga agaatcactc gcggaactcg tcgcaaacgg cgtggtcgtc
     2221 tccgacagtt tcaccggttt gcgcgctttg ctgactcccg gcagccgcaa gacccgagct
     2281 gccgccacgc gcaagcatcg ccaaccggtt tacgagatgg cgagcgccgg ccgctggtcg
     2341 attattcacc gcgaaaacgg aaacggcgca accgcaaacc gcaacaacca gaacccgatc
     2401 gatcaggaga aagcggaaga gatcgcgtgg acgctgctca ggcgttacgg tgtcgtcttc
     2461 aaacgtttgc tcgaacgcga aggcatgaac ctgccgtggc gtgtgctgtt gcgcatctat
     2521 catcgtctcg aagcgcgcgg cgagattcgt ggcggccgct ttgtcggcgg catttccggc
     2581 gagcagttcg ctttacctga cgccgtcgga atgctgcgcg cgatccgacg cgagggcgcg
     2641 caggacagta tgatctccgt cagcgcggcc gatcctctga acctcgtcgg catcatcatt
     2701 cccggcaacc gcatcactgc tcacacgagc aatcgcgtgc tctatcacga cggcgcgccg
     2761 atcgccgcgc tcgaatccgg cgagacgcat ttccttctcg aactgagtcg cgcaacggaa
     2821 tggaaagcga aagcggcgct cgtgcgtaaa gcgacgcgcc cggaacttcg ttcctacctg
     2881 caaagacctg cctaacacgc ccgcaccgat gtcgttcatt cacgcacgaa atcgtgtcga
     2941 gaaccggcgt taatctgcat acgactcagt aaaaacgccc ttctcgcaaa ggcatggtac
     3001 ttgccaaaac ccttccgaca agggaggtag tttgaatgaa gcaaatttac tcgagtaaaa
     3061 aagtgggcgg ttacatactg gcactcttcc tgattcttgg ttttacagca atcgccagca
     3121 ctagtgttca ggctcaatac cgtgacgatc gctatcgccg cgaccgcgat tatcgtgacg
     3181 atcgctatcg tcgcgaccgc gactatcggg acgaccgtta tcgccgcgac cgcgactatc
     3241 gcgacgatcg ttatcgcggg gatcgttaca gcaactacga cgtcgcgcgg cagcaaggct
     3301 atagctgggg catgaacgtc ggcgccgcgg acgcgcagcg cggacagagt tacaacccgc
     3361 agcgttcacg ctattggaag aacgcgacgc aaggttacaa ctcgtcttac ggaaaccggg
     3421 gacagtacaa gcaggtcttc cgtgacgcgt tcgagcaggg ataccgtgac ggctggcagc
     3481 gtttcgcggg cgatggccgg cgcaacaatg gccgctggaa caatcgctgg ccttactaac
     3541 cagagacaat ccaacactta aagaggggtg gcatttcggg ccaccccttt tttatggaaa
     3601 ccgcgttcga ttggcactgc ctttaggttg tgagagcact agcacaacaa aactcaacgg
     3661 tttccttcaa gctcggagtc gcgccgaaac gccggccccg gcttttccca ctcgtcaacc
     3721 gcaagatcat ggtgccgtcc accgaggact ttatgcgcgt gaacaacgcg acagtccgcg
     3781 agggtcaggc gcaccgtgtt tggccaccgg aagttctgcg ccagtttcac atggcggaag
     3841 tggtaaccaa caccaacgtt cagcactacg tccttcgcga caccagcatc tcgcccgtgc
     3901 ggtaacgcct ttgaccctga acgccttcag cgcgtcgtcg tttttgcagg gataagagtc
     3961 cgcgccaaag acgcggacca aaccaaaccg cctacttctt cgcgttctgt tcgtcgagcc
     4021 aggtcttcag cggtgcgaag tagtcgatga tggcagtggc gtccatcttt tcttcgcccg
     4081 tcatcgcttt caacgcatcg ggccaggggc ggctcgtgcc catagccagc atcgctctca
     4141 acttctcgcc cgctttcttg tttccataaa tcgaacactg gtaaagcgga ccgttgaacc
     4201 cggcttcgcg gcacagcgcg cggtgaaact gaaactgcag gatcgccgcg aggaagtaac
     4261 gcgcgtacgg cgtgttcgcc ggcacgtgat acttcgcgcc cggatcgaag tcagactcgc
     4321 tgcgcgcgac gggcgccgcc acgccctgat acttctcgcg caactcccac cacgctttgt
     4381 tgtaatcgtt tggtccaacc tcacccgaga aaactttcca ccgccactga tccaccagat
     4441 aaccaaacgg caaaaacgcc accttgtcga gcgcgcgatt caacagaaaa ccaatgtccg
     4501 ccgactggtc cggcacgctc tcaatcaacc cgagctgctt cagatacggc ggcgtgaccg
     4561 acagcgctac agtgtcgcca atcgcttcgt gaaacgcgtc gatcgcgccg tcgcggaaga
     4621 gatccggctg accggcgtaa gccatctggt agtagttgtg accaagctcg tgatggacca
     4681 ccgagaagtc ttcctcgtta atgttgatgc acatcttcag ccgcacgtct ttctcgtaat
     4741 cgatgtccca cgcgctcgcg tgacacacca cttcacgatc cgccggcttc gtaaacatcg
     4801 atcgttccca aaaactcgcc ggcagcggct cgaaccccaa cgaagtaaag aaaccctcac
     4861 cgtaacgaac catctgcttt gcgtccgtat tgcgtgcttt cagaatcgcc gtcagatcgt
     4921 atccacgatc agacgtagcg ggcgcgagca gcggatagat gttgccccac gtttgcgccc
     4981 acatgtttcc gagcaggtgc gccggaatcg gcttgtcttc cgcgacgatt tccttgccgt
     5041 acttctcgga aagcttgcgg cgcgtgaagg tgtaaagcga gtcgtaaagc ggcttcacct
     5101 gttgccaaag ccgttccatc tcggcggcga aagcgtcagg ctccatgtcg tacttcgaac
     5161 gccacatcgc gcctgtgtct ttgaagccca tctccttcgc gcccttgtta ctgagctcga
     5221 cgaagcgcac gtaatctttg cgaatcggct gcgcgatctg atgccaaccg acccagacgc
     5281 gcttcaactc ttccggatcg cgagacgtgc cgatgacttg ttccaactcc ggcaggctga
     5341 aacactttcc tttgtcgccg tcagggcaga acttaccttt gccgtaatcg ccttccatcg
     5401 acgcggtgat cttcgtgagc tcagcgcgtt cggccggatc tcgcggcgcc ggaagcgtga
     5461 gcgagagttt caacagcagc aacttgcgtt tggcttccgg tgaaaggttc aacgactcga
     5521 agggccgtcc ttgttctgcc agctcggtcg ttgcgccgat gaatctttca ttcgcggcag
     5581 cggcgagcgc ttcggtgtcg tcggtaacgt acgtgctctt gatccagtcg gcccggctcg
     5641 cgccgatcgc gagttcgagg agccgctttt cagcatcggt caaaaacttt ccggcttcgt
     5701 cagcagttgc cgggccggta ggtgtagcgt tcggagcgtc agtacaggaa gacataagca
     5761 acagtcccac acagataagg aagaacccgc tcaaccacag ttggcgcggt cgaaaattga
     5821 agttcacggc aaacctcctg gagtttttgg gagggccaca atataacctg ttgtattatc
     5881 taagaccact ta
//
LOCUS       DASWTX010000912         2894 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_102010, whole genome shotgun sequence.
ACCESSION   DASWTX010000912 DASWTX010000000
VERSION     DASWTX010000912.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2894
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102010"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..537
                     /locus_tag="VGD38_13770"
     CDS             <1..537
                     /locus_tag="VGD38_13770"
                     /inference="COORDINATES: protein motif:HMM:NF013705.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ C-terminal domain-containing protein"
                     /protein_id="HEY0729140.1"
                     /translation="QMQAAETCPTCNGTGVKDGKVCETCGGTGEVVRPRTIEVNIPAG
                     VRDGSTVRLAGQGGSAGNGSEPGDLYLRIRLRPHPLFHVNGDDLEVELRIAPWEAVLG
                     AKVEAPTIDGKVEVTVPPGTNTGQRLRLRGQGLNKRNGGRGDEYVRMKIVVPKDVSAE
                     ERRLYEELQRTSRFDPRR"
     gene            562..861
                     /locus_tag="VGD38_13775"
     CDS             562..861
                     /locus_tag="VGD38_13775"
                     /inference="COORDINATES: protein motif:HMM:NF024979.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone modulator CbpM"
                     /protein_id="HEY0729141.1"
                     /translation="MSIYDPDLDEPLTFDVVAETVGTRRSLVMRLAERGLIETVSSEA
                     DEPRLPRRVVIQLRRMHRLRRDLGVNYAGAAVILDLVRRIEELNRELAEMHRRMQ"
     gene            878..2071
                     /locus_tag="VGD38_13780"
     CDS             878..2071
                     /locus_tag="VGD38_13780"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: protein motif:HMM:TIGR02037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Do family serine endopeptidase"
                     /protein_id="HEY0729142.1"
                     /translation="MATRSRLFAVCVSLVLAIVASQSACNRQREGNGNYRLTSSSDPN
                     SGGGGTANPGSGSNPAVMPVSSYADVVSKAVPAVVTIHSQMRVRQPQQFPFMDDPFFR
                     QFFGERNQQQPRAEPRQGLGSGVIIDANGYILTNHHVIDGAEQIKVDLNDGRSLDARV
                     VGTDPPSDLAVLKVETSGLPVLVLGDSDRARVGDVVLAIGNPLGVGQTVTMGIISAKG
                     RQTGLSNGSFEDFLQTDAPINRGNSGGALVSTNSELIGINSQILSPSGGSIGLGFAVP
                     SNMARTVVEQLINSGQVRRGQLGITVLRIPSEEATRLGVTQGPGVVVYNVQGGSAADR
                     AGLRRGDVITALNGNAVSEPNSFRNQIASTPPGSEVTLNVRRNGQEQQVRVRLGEFTP
                     AAQER"
     gene            complement(2545..>2894)
                     /locus_tag="VGD38_13785"
     CDS             complement(2545..>2894)
                     /locus_tag="VGD38_13785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729143.1"
                     /translation="REWLGYRPARNAQGLIVNEDNIPIPPNCQEKDKEGNQVMKCSPA
                     WVGQSGGEWWQSRKGDVVTLFGWAIMVMLLSVGAPFWQDTLESLFGIKNLLRQKSGTQ
                     NIETQSGAGQPKD"
BASE COUNT          590 a          774 c          943 g          587 t
ORIGIN      
        1 cagatgcaag cagcggaaac gtgtcccact tgcaacggca cgggagtgaa agacggcaag
       61 gtctgcgaaa cgtgcggcgg aacgggagaa gtcgtaagac cgaggacgat cgaagtaaac
      121 atccccgccg gtgtgcgtga cgggtccacg gttcgacttg ccggacaagg cggaagcgcc
      181 ggcaacggca gcgagcccgg cgatctttac ctgcgcattc gactccggcc gcatccgctt
      241 ttccatgtga acggcgacga tctcgaagtt gagttgcgta ttgcgccgtg ggaagcggtg
      301 ctgggtgcga aagtcgaagc gccgacgatc gacggcaagg ttgaagtgac tgttccgccg
      361 ggcacgaaca cgggccagcg tttgcgtctt cgcgggcagg gattgaacaa gcgcaatggc
      421 ggcagaggcg atgaatacgt gcgaatgaag atcgtggtgc cgaaagacgt aagcgctgaa
      481 gagcgtcgct tgtacgaaga gttgcagcgg acgtcgcgat tcgatccgcg acgctaatgt
      541 ttgaaggcag gtttcagaac gatgtcgata tacgatccgg atcttgatga accattgacg
      601 ttcgacgtgg tggccgaaac ggtgggcacg aggcgttcgc tcgtgatgcg actcgccgaa
      661 cgcggattga tcgaaacggt cagtagtgaa gcggacgagc cgcgattgcc acggcgcgtg
      721 gtgatccagc ttcgtcgtat gcaccggctg cggcgcgatc taggcgtcaa ctacgcgggc
      781 gccgctgtga tactcgatct ggtccgtcgg atcgaagagt tgaatcggga gttggcggag
      841 atgcaccgcc ggatgcagtg aagagaaagg aactattgtg gcaaccagat caagattatt
      901 cgccgtttgc gtgtcgctcg tgctggcgat cgtcgcttcg cagagtgcgt gcaatcgtca
      961 acgagaaggc aatggcaact atcggctgac gtcgtcgtcc gatccgaatt ccggtggcgg
     1021 cgggaccgca aatccgggga gcggtagcaa cccggcggtc atgcccgtgt cgtcgtacgc
     1081 cgacgtcgtg agcaaagccg tgcccgcggt ggtcacgatt cactcgcaga tgcgtgtgcg
     1141 gcagccacag cagtttccgt tcatggacga tccgttcttt cgccagttct ttggcgagcg
     1201 aaaccagcag cagccgcgcg ccgagccgcg tcagggtctg ggttcgggcg tgatcatcga
     1261 cgcgaatgga tacattctga cgaaccacca tgtgattgat ggcgcggaac agatcaaagt
     1321 ggaccttaac gacgggcgtt cgctcgacgc gcgggtcgtc gggacggatc cgccgagcga
     1381 tctggcggtg ctgaaggtcg agacgagtgg tttgccggtg ctggtgttgg gtgattcgga
     1441 tcgcgcgcgc gttggcgatg tggtgttggc gattggcaat ccgttgggcg tgggtcagac
     1501 cgtgacgatg ggcatcatca gtgctaaggg acggcagacg gggttgagca acggcagctt
     1561 tgaagacttt ctgcaaactg atgcgccgat caatcgcggc aactcgggcg gcgcgctcgt
     1621 tagcaccaac agcgagttga tcggcatcaa ctcgcagata ctttcgcctt cgggaggcag
     1681 tattgggttg ggttttgcgg tgccgtcaaa catggcgcgc acggttgtgg agcagttgat
     1741 caattcgggc caggtcaggc gtgggcaact cgggatcaca gtgcttagga ttccttccga
     1801 agaagcgacg cgattgggcg tgacgcaggg accgggtgtg gttgtttaca acgttcaggg
     1861 aggcagtgcg gccgatcgtg cggggctgcg tcgtggagat gtgatcacgg cgctcaacgg
     1921 caacgccgtg agcgagccga acagcttccg caaccagatc gcgagcacgc cgccgggcag
     1981 tgaagtaaca ctcaacgtca gacgcaacgg gcaagagcag caagtgcgcg tgaggctcgg
     2041 cgagttcacg ccggcagcac aggagcgtta gtaattgccg gtcggggtca tagcgcgcag
     2101 tgtcgacaat tagcggcgca agtgtagaac gccggaggcg ttcgctaatt tcagcccgat
     2161 gggctgaacg cggaaggcgt tgtctaacgg cagcccgatg tgaacgccgg aggcgttcgc
     2221 taatttcagc ccagggttgg agcttgcgac aaccctggga aacccaacaa accatgcctt
     2281 tgcaacgctg aaagcgttgg cgagggatcg caccacccgg tttgccaacg ctttcagcgt
     2341 tagaacctct ttcttgtatg tttacccagg gttgtgccaa ccctgggctc ataactcgta
     2401 aacaccttcg gcgttcagac ctggttcata actgccagag cgttcggcgt tcagacttga
     2461 ttcaaaactt aaagccttcg gcgttcagat gggccattac gcgcacgatc taaatctcac
     2521 ttgaccgcac gctctcaaat ttcactaatc cttcggctgg cctgcgccgc tttgggtttc
     2581 gatgttttgg gtaccgctct tttggcgcaa gaggttcttg atgccgaaga gtgattccag
     2641 ggtgtcttgc cagaagggcg cgcccacgct caggagcatc accatgatgg cccaaccgaa
     2701 aagtgtcacg acatcgcctt tgcggctctg ccaccactca cccccgcttt gcccgaccca
     2761 cgcgggtgaa cacttcatta cctggttgcc ctccttgtcc ttttcctgac agttcggcgg
     2821 aatcgggatg ttgtcttcgt tgactatcag cccttgagca ttgcgcgcgg gcctgtaacc
     2881 gagccactcg cgtt
//
LOCUS       DASWTX010000913         3026 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_271524, whole genome shotgun sequence.
ACCESSION   DASWTX010000913 DASWTX010000000
VERSION     DASWTX010000913.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3026
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271524"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1106)
                     /locus_tag="VGD38_13790"
     CDS             complement(<1..1106)
                     /locus_tag="VGD38_13790"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: protein motif:HMM:NF003645.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006222 - UMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HEY0729144.1"
                     /translation="MVYRSLVRRLLFSLPPETAHELALHSLSLLQPKFINDVIRRRYT
                     AEASAPLYRFGIPFPNAVGLAAGFDKDGVALRALAALGFGFIEAGTVTLHPQPGNPRP
                     RLFRLPEDKALINRAGFNNSGAAAFAKRVAGEKLRCVLGVSIGKSKITPLEEATEDYL
                     SSFELVYDVADYVAVNVSSPNTPQLRQLQQSEQLSALLSALQEKNRELQQAHQRSRPM
                     PLLVKLSPDLTSEDLEMIVDVVVRLEIDGIIATNTTITRDNLQTDNASVSKIGEGGLS
                     GAPLRATSTRIVAQLYRLTKGRVPIIGVGGIFTAEDAWEKIAAGASLVQLYTGFIYRG
                     PSIAREINEGLQRILNREGFANLDAAVGCRANER"
     gene            1193..1774
                     /gene="pyrR"
                     /locus_tag="VGD38_13795"
     CDS             1193..1774
                     /gene="pyrR"
                     /locus_tag="VGD38_13795"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: protein motif:HMM:NF003549.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HEY0729145.1"
                     /translation="MIVSREMDFIEKARIMDGPRINRALARLSSEVVEENHGAGDLFL
                     VGIRRRGVPLAERMANKIADLEGYRPPVGVLDITLYRDDLSTVGAKPVVNRTDLPGDI
                     ENRNIVLIDDVLYTGRTIRAALDQLIDFGRPRRVQLAVLIDRGKEHRELPIQADYIGK
                     LVPTKKSEIIKVMLQEFDEEEGVVIVERPSETA"
     gene            1788..2771
                     /locus_tag="VGD38_13800"
     CDS             1788..2771
                     /locus_tag="VGD38_13800"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEY0729146.1"
                     /translation="MAAFFMGNVATTFNRRHLLGIRDLDAGEITHLLDTAETFRDVSK
                     REIKKVPALRGRTVINLFFESSTRTRTSFEIAAKRLSADAVNVSVSTSSVTKGETLLD
                     TARNLEAMAPDCIVIRHSMAGAPQHLARMCNAPIVNAGDGSHEHPTQALLDALTIREY
                     KGRIDGLKVAIIGDILHSRVARSNIYLLTKLGAKVSVGGPGTLVPDEFVNIVDNGLTI
                     EKHFEDAIDGADVVMILRIQRERQDAAFFPSMREYAVHYGLQPRHLERAAPDAIVMHP
                     GPMNRGVEISSEIADGSRSLILDQVTNGVAVRMAVLYLLAGGSHQDTEEKG"
     gene            2768..>3026
                     /locus_tag="VGD38_13805"
     CDS             2768..>3026
                     /locus_tag="VGD38_13805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0729147.1"
                     /translation="MKLLIANGYVIDPSQQVNAGKNLLIENGRVLDFLNRGEAAPEDA
                     HVLDATGLVVAPGFIDLHTHLREPGQEYKETVATGAAAAVAG"
BASE COUNT          671 a          893 c          838 g          624 t
ORIGIN      
        1 ctcctttcgt tcgcgcggca gccgacggcc gcgtcgaggt ttgcgaatcc ctctcgattc
       61 agaatccgtt gtagtccttc attgatttcg cgagcgatgg acggcccgcg atagataaag
      121 ccagtgtaca actgaacgag actcgcaccg gcggcgatct tttcccacgc gtcttcggcg
      181 gtgaagatcc cgccgacgcc gatgattgga acccgccctt tagttaaccg ataaagctgc
      241 gccacgatcc ttgtagatgt cgcgcgcagc ggtgctccac tcaatccccc ttctccaatc
      301 ttagatacgc tagcgttatc agtttgcaag ttgtcgcgtg taatcgtcgt gttcgtggcg
      361 atgatgccgt cgatttccaa acgaacaaca acgtcaacaa tcatctccag atcttcactc
      421 gtcaagtcag gcgacaattt caccagcaac ggcatcggcc gcgagcgctg atgggcctgt
      481 tgtaattcgc gatttttctc ctgcaaagca ctcaacagcg ccgacaactg ctccgattgt
      541 tgtagctggc gcaactgcgg cgtgtttggc gaactgacat tcaccgcaac gtaatcggcg
      601 acgtcgtaaa ccagttcgaa actcgataaa taatcttcag tcgcttcttc gagcggcgtg
      661 atcttgcttt taccgatgct cacgccgagc acgcagcgaa gcttctcgcc cgcgacgcgt
      721 ttcgcaaacg ccgccgcgcc cgagttgttg aaccccgcgc gattgatcag tgctttgtct
      781 tcaggcaaac gaaacaaacg gggccgcggg tttcctggtt gaggatgcaa tgtaactgtt
      841 ccagcttcga tgaagccgaa gccgagcgct gcgagtgcgc gaagagcgac gccgtcttta
      901 tcgaagccgg ccgcaagtcc aacggcatta gggaagggaa ttccgaaccg ataaagagga
      961 gcggatgctt cagcagtgta acggcgccga atgacatcgt tgatgaactt cggttgtaac
     1021 aacgaaagag aatgcagtgc caattcgtga gctgtctcag gcgggagact gaaaagaagc
     1081 cgacgcacca gtgagcggta gaccatgtcg ggattctctt gtacttcgta gctgatactt
     1141 tgtaaagcgc aggcgctttc tcaaagcgca aacttgtatc actaaaagct tcttgatagt
     1201 atcccgcgaa atggatttca tcgagaaggc tcgcatcatg gatggcccgc gcatcaatcg
     1261 cgcgttggcg cgcctgtcgt ccgaagtggt cgaggaaaac cacggcgcgg gcgacctgtt
     1321 tctcgtcggc attcgccgcc gcggcgtccc gctcgccgaa cgcatggcca acaaaatcgc
     1381 ggacctcgaa ggttatcgtc cgccagtcgg cgtgctcgac atcacgctct atcgcgacga
     1441 cctctcgacc gtcggcgcca agcctgtagt taatcgcaca gatcttcccg gcgacatcga
     1501 gaaccgcaac atcgttttga tcgacgacgt gctttacacc ggccgcacca ttcgcgctgc
     1561 gctggatcaa ttaatcgact tcggccgtcc gcgccgcgtg caactcgcag ttctgatcga
     1621 tcgcggcaag gaacatcggg aacttccgat tcaggccgac tacatcggca aactcgtgcc
     1681 gaccaagaag agcgagatca tcaaggtcat gctgcaggaa tttgacgagg aagaaggcgt
     1741 ggtaattgtc gagcggccgt ccgaaacggc ttgaacggaa gcggccaatg gccgcttttt
     1801 ttatgggcaa cgtagcgaca acttttaatc ggcggcatct gttaggcatt cgcgacctcg
     1861 atgcagggga gattactcac ctgctcgaca cggctgagac ttttcgcgac gtctcaaagc
     1921 gcgagatcaa aaaagtcccc gcactgcgcg gccgcacggt catcaatctc ttcttcgaat
     1981 cttcaactcg cacacgcaca tctttcgaga tcgccgcgaa gcggctctcg gcggatgcgg
     2041 tgaacgtgag cgtctcgact tccagcgtca ccaaaggcga aacattgctc gataccgctc
     2101 gcaatctcga agcgatggcg cccgattgca tcgtcattcg ccactcgatg gccggcgcgc
     2161 cccaacatct cgcacgcatg tgcaacgcgc cgatcgtgaa tgccggcgac ggttcgcacg
     2221 aacacccgac acaggcgttg ctcgacgcgt tgacgattcg cgaatacaag ggccgcatcg
     2281 atgggttgaa ggtggcaatc atcggcgaca tcctgcattc gcgcgtcgcg cgttcgaaca
     2341 tctacctgct tacaaagctc ggcgcaaagg ttagcgtcgg cggtccgggc acactagtgc
     2401 ctgacgagtt tgtgaacatc gtcgacaacg gtctcaccat tgagaaacat ttcgaagacg
     2461 cgattgacgg cgcggacgtc gtgatgatcc tgcgcattca gcgcgagcgg caggacgcgg
     2521 cgttctttcc gtcgatgcgc gaatacgccg tgcactacgg tttgcaacca cgccatctcg
     2581 aacgcgccgc gcccgacgcg atcgtgatgc acccgggacc gatgaatcgc ggcgtcgaga
     2641 tctcgtcgga gattgcggac ggctcgcgtt cgctgatcct ggaccaggtg acaaacggcg
     2701 tcgcggtgcg catggctgtg ctctatttgc ttgcaggcgg ttctcatcaa gacacagaag
     2761 aaaaaggatg aaactactga tcgccaacgg atacgtcatc gatccgtctc aacaagtcaa
     2821 cgccggaaag aatttgctga tcgaaaacgg ccgcgttctt gattttctta atcgcggcga
     2881 agccgcccca gaagacgcac acgttctcga cgccacgggc cttgtcgtcg caccagggtt
     2941 catcgacctc cacacacatc tgcgcgaacc gggtcaggaa tacaaagaga cggtcgcgac
     3001 tggcgcagcc gcggcagtcg ccggtg
//
LOCUS       DASWTX010000914         2027 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_386035, whole genome shotgun sequence.
ACCESSION   DASWTX010000914 DASWTX010000000
VERSION     DASWTX010000914.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2027
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386035"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1463)
                     /locus_tag="VGD38_13810"
     CDS             complement(<1..1463)
                     /locus_tag="VGD38_13810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729148.1"
                     /translation="MKKYLRAKLLLVVVALGLAASSSAFGQANIEISNTIDAPGVGFN
                     DPTPVAPVGGNNGTTLGQQRLNAFRFAADIWGAALNSGPTITVQASWDSSLFCGATTA
                     TLGSASTISLRQNFANAPFTSTWYPAALGNALSGTDTSGNPEIRARFNPRIGTSGCLQ
                     NRQWYLGLDGNHGTGIDLVSVLLHEFGHGLGFASFTDPQTGEFVRTSQGQPFPSVWDK
                     FLRDNSSAKLWTDMTDAERVSSAINTSNLVWNGSQVTAAAPGVLTQGTDSSGRVRMFA
                     PNPFDAGSSVSHFDTAAFPNLLMEPNITPGLNHSLSPPSDLTLTLLREIGWNTANPTP
                     SPKPTPSPPPNDNFAAAQVISGCVGSVNGTNVGATAEGGEPNHSPPSIVAGNRSVWYQ
                     WQAPVSGTVEIDTAGSGYDTVLAVYTGNAVNSLALVIKNDDVVQGDTSSFVSFSALAG
                     QTYRIAVDGFPNGGSIGDVGLVKLNWEQSNCANSWVPT"
     gene            complement(1460..>2027)
                     /locus_tag="VGD38_13815"
     CDS             complement(1460..>2027)
                     /locus_tag="VGD38_13815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729149.1"
                     /translation="KKKTKPVHSAKSQSVKSQSAKRLPRRSVIIIAAVALVSVAAVTV
                     ISRQSASGKAEGTQKITTETANAAGKKYTKVKVGNQEVFVDSQTGKIKPLTPQEAQEL
                     AQGLKTMLDKNKSSEGLVEEYHADGSVSIDLQGRFQNVTVARENEDGTVTTSCVDTPR
                     AAANFFGIDPKLVESNPQAPKPVNSPGQ"
BASE COUNT          415 a          577 c          594 g          441 t
ORIGIN      
        1 gtgggtaccc aagagttggc acagttgctt tgctcccaat tgagcttgac cagtccgaca
       61 tctccaatcg agccaccgtt ggggaaaccg tcgacagcaa ttcgataggt ctgacccgcc
      121 aacgcggaaa aactgacaaa gctcgaagtg tctccctgga caacgtcatc gttcttaatg
      181 acgagggcca gcgaattcac cgcgttgccg gtgtaaacgg ccagcaccgt gtcgtagccg
      241 cttccggcgg tatcgatctc gacggtgccg gaaaccggcg cctgccattg ataccagacc
      301 gaacgattgc cggcgacaat actcggcggc gagtgattcg gttctccacc ctcggcggtc
      361 gcaccgacgt tggtgccatt cacactgcca acgcaaccac tgattacctg cgccgcggcg
      421 aaattatcgt ttggcggcgg cgacggtgtc ggctttggcg acggcgtcgg gttcgcagtg
      481 ttccacccaa tctctcgtaa taacgtaagt gtcagatcgc tcggtggact aaggctgtga
      541 ttgagacccg gcgtgatgtt cggctccatc aacagattgg gaaacgcagc cgtatcgaag
      601 tgcgaaaccg aagagccggc atcgaacggg ttcggcgcaa acatacgtac tcgaccggac
      661 gagtcggtgc cctgagtgag cacgcccgga gcggccgccg tcacctgtga accattccac
      721 acgaggttgc tggtgttaat ggctgaggag acacgctcag cgtcggtcat atcagtccag
      781 agttttgcgc tgctgttgtc acgcagaaac ttgtcccaaa cgctggggaa aggctgtccc
      841 tgggaagttc tgacaaactc tcccgtctgc ggatccgtaa aacttgcgaa gccgaggccg
      901 tgaccgaatt catggagcag aactgaaacc aaatcgatgc ccgttccatg attgccatcc
      961 agcccgagat accactggcg attctgaaga caaccggacg ttccgatccg cgggttgaat
     1021 ctcgcgcgaa tctcagggtt gccgctcgta tcagtgcctg acagcgcgtt ccccagagcg
     1081 gccggatacc acgtactggt gaacggagcg tttgcaaagt tctgccgcag gctgatggtt
     1141 gaggcggacc cgagtgtcgc ggtagtggcg ccgcaaaaca acgaactgtc ccaactcgcc
     1201 tgaacagtaa tcgttgggcc actgttcaat gccgcgcccc aaatatcggc cgcgaatcgg
     1261 aaggcattga gccgttgctg gccgagagtg gttccattat tcccacccac cggagccacc
     1321 ggtgtgggat cgttgaaacc aacgccgggg gcgtctatgg tgttcgagat ctcaatattg
     1381 gcctggccaa acgcggaaga agaggccgcg aggccgagcg ccaccacaac gagaaggagc
     1441 tttgcgcgca agtacttttt cattggccag gtgaattaac aggtttaggt gcctgagggt
     1501 tggactcgac cagcttcgga tcgatcccga agaaattcgc cgccgctcga ggcgtgtcga
     1561 cgcaggacgt ggtaaccgtg ccatcctcgt tctcgcgcgc aacagtcacg ttctgaaacc
     1621 gtccctggag atcgatggag actgaaccgt cggcgtggta ttcctcgaca aggccttcgg
     1681 acgacttgtt cttgtccagc atcgttttca ggccttgcgc caactcctgc gcttcctgcg
     1741 gggtcagcgg cttgatcttg ccggtctgac tgtcgacgaa aacttcctga ttgccaacct
     1801 tcaccttggt gtatttcttg ccggctgcgt tggcagtttc agtcgttatc ttttgtgtgc
     1861 cttcggcttt gccgctggcc gactgtcgcg agataactgt gactgctgca acggatacga
     1921 gggcgacggc agcgatgatg atcactgacc ggcgtggcaa tctcttggca gactggcttt
     1981 tgacggactg gctcttggcg gaatggaccg gtttggtttt cttcttt
//
LOCUS       DASWTX010000915         1888 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_77976, whole genome shotgun sequence.
ACCESSION   DASWTX010000915 DASWTX010000000
VERSION     DASWTX010000915.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1888)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1888)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1888
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77976"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..559
                     /locus_tag="VGD38_13820"
     CDS             <1..559
                     /locus_tag="VGD38_13820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729150.1"
                     /translation="DDEDKFDGRYTPNLGFKVANTEYGDLNVSIYSYVRYLNQLGLDD
                     TFTDAFGITKSVQNRQDVQLLKLQIKFLGWLLNPKFRYFLYAWTSNANQGQGAQVVLA
                     GNLQYTFNKYFTLGGGIRSLPGTRSVEGNFPFWLSVDSRHIADEFMRPSYTSGVWATG
                     NVTDRLKYQVMLGNNMSTLGVPASR"
     gene            569..1219
                     /locus_tag="VGD38_13825"
     CDS             569..1219
                     /locus_tag="VGD38_13825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729151.1"
                     /translation="MNTLSSALIWFPTGDFEKGFSGQGWGDFEHHEKFSTRLGFHFSR
                     SDENRESQPNSEQFENTQLRLSDGTVIFTPNIFGPGVVISDARYRMMTVDGGFKYRGY
                     SLEGEYFWRWLDKFRGDNIQGVPRLFDHSAQIQATAMIVPQKLQAYAGYSKIFGQFGQ
                     PWDFRVGTNFFPFKNKVVRWNTEALYLHRSPVGYTSVPFPLGGRGWVFHSNMELAF"
     gene            1227..>1888
                     /locus_tag="VGD38_13830"
     CDS             1227..>1888
                     /locus_tag="VGD38_13830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729152.1"
                     /translation="MRTVLAITLALFLLASPAVAQAPANNYLFNDSHFHLTNYIQEGI
                     DIRDFLKIMGNKAGRVALFGIPLQQQWSYRVDENRGPTYYLNSDAPLYYYSFTDAWIA
                     TAYKSLSKEDQARFDPMITGFNPTDMYAADHIRRVLTAFPGVFTGIGEFSIHKEFVSA
                     KIAGEVGSLQDQALDRLIKFATEVGLVVLIHNDVDVPFAKPGAEPAYAAHMKALFKRH
                     PNA"
BASE COUNT          424 a          558 c          492 g          414 t
ORIGIN      
        1 cgacgatgaa gacaagtttg acggacgtta cacgccgaat ctcggtttca aagttgcgaa
       61 caccgaatac ggcgacctga acgtcagcat ctacagctac gtcaggtatc ttaatcaact
      121 ggggctcgac gacactttca ccgacgcgtt cggcattaca aagtcagttc agaaccgcca
      181 ggacgttcag ctcttaaaac ttcagatcaa gttcctcggc tggctgctca atccaaagtt
      241 tcgctacttc ctctacgcct ggacctcgaa cgcaaaccag ggacaaggcg cgcaggtagt
      301 tctcgcgggc aatctgcaat acaccttcaa caagtatttc actttaggcg gtggcatcag
      361 atcgctgccg ggcacgcgca gtgtcgaagg caattttccg ttctggctga gcgtcgacag
      421 ccgccacatc gccgatgaat tcatgcgccc gtcgtacacg tcgggagttt gggccaccgg
      481 caatgtgacg gaccgtctca aataccaggt catgctcggc aacaacatga gtacgctcgg
      541 cgtgcccgca tcgcgttgag acaacggctt gaacacgcta tcgagcgcgc tgatctggtt
      601 tccgaccggc gacttcgaaa aaggattcag cggacagggc tggggcgact tcgaacacca
      661 cgaaaaattc tccacgcgtc tcggctttca cttcagccgc agcgacgaga accgcgagag
      721 ccagccaaac tccgaacagt ttgagaacac gcaacttcgc ttgtcggatg gcacagtgat
      781 cttcacgccc aacatctttg ggccaggcgt cgtgatcagc gatgcgcgtt atcgaatgat
      841 gacggtcgac ggcggtttca agtatcgcgg ttattcactg gaaggcgaat acttctggcg
      901 ctggctcgac aagttccgcg gcgacaacat tcaaggcgtt ccgcggctct tcgatcacag
      961 tgcgcaaata caggccacgg ccatgatcgt gccgcaaaag ctccaggctt acgccggcta
     1021 ctcgaagatc ttcggccagt ttggccagcc gtgggacttt cgcgttggca ccaatttctt
     1081 cccgttcaaa aacaaggtcg tgcgttggaa cactgaggca ctttatctcc accggtcgcc
     1141 ggtcggttac acctccgtgc ctttcccgtt aggcggcaga ggctgggttt tccattcgaa
     1201 tatggagctc gcgttttgag gttttgatga gaaccgttct agccatcact cttgcgttat
     1261 tccttctcgc gagtccagcc gtagcgcagg ctccggcgaa caactatctc ttcaacgact
     1321 ctcatttcca tctcacgaat tacatccagg aaggcatcga catccgcgac ttcctgaaga
     1381 tcatgggcaa caaagccgga cgagtcgctc tgttcggcat tccgctgcaa cagcaatggt
     1441 cctatcgcgt cgacgaaaac cgtggtccaa cttactacct gaactccgac gcgccgctct
     1501 attactactc gttcaccgac gcgtggatcg ccaccgctta caagtctctt tcaaaagaag
     1561 accaggcgcg tttcgatccg atgatcacgg gtttcaaccc gaccgacatg tacgccgcgg
     1621 atcatattcg acgcgtgctt acagcctttc ccggcgtgtt cacgggcatc ggtgagttca
     1681 gcattcataa ggaatttgtt tccgcaaaga tcgcgggcga agtcgggagc cttcaggacc
     1741 aggcgctcga tcgattgatc aagtttgcca cggaagtcgg gctcgtcgtg ttgattcaca
     1801 acgacgtcga cgtgccgttt gcgaaacccg gcgcagagcc ggcgtatgcg gcgcacatga
     1861 aggcgctctt caaacgccat ccgaacgc
//
LOCUS       DASWTX010000916         1531 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_423333, whole genome shotgun sequence.
ACCESSION   DASWTX010000916 DASWTX010000000
VERSION     DASWTX010000916.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1531
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423333"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(147..>1531)
                     /locus_tag="VGD38_13835"
     CDS             complement(147..>1531)
                     /locus_tag="VGD38_13835"
                     /inference="COORDINATES: protein motif:HMM:NF014026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEY0729153.1"
                     /translation="MADLHRLAPDKPTTAELAIEAGVDTELPDPDSYPTLLQLVKDGR
                     VSEATINEAVARNLRAKFLLGLFENPYVDVERAARVTNSKEHIELAAEAARRSITLLK
                     NDNNLLPLNLSTLKSIAVIGPNAAQVHLGGYSDEPGRGVSVLQGIKDKVGDRAKVVYA
                     EGCKITKEGGDWFADSATLNDPAADQKLINEAVAVAKTADVALLVLGGNEDTNKEGWA
                     DNHLGDRDSIDLVGRQNDLVKAVLETGKPTIVMLINSGPLSINYIAENVPAILEGFYL
                     GQETGVGVADVLFGDYNPAGKLTISFPRSVGQLPLFYNRKPTARRGYLFANKEPLFPF
                     GFGLSYTTFGYSDLKLRAAKIGPGDNARVSVKVTNTGKRAGDEIVQLYIRDLVSSVTR
                     PIMELKDFQRISLAPGESKTVEFVITPDKLSFLDLNLKSVVEPGMFDIMVGTSSVKYE
                     TVKLEVVRGT"
BASE COUNT          311 a          450 c          414 g          356 t
ORIGIN      
        1 gcccagctca ctcaaacgct tcacgatcgt gaccggactc agagtcggac gcgtcgcatc
       61 gccaaacgga tcgcgcccgc gattaccgac ggtccaaagt ccaaaagtaa atttgtgttc
      121 cggtttcggt tgataattgc cgcttgtcat gtccccctca caacctcgag tttgaccgtc
      181 tcatacttga cggaactcgt tcccaccatg atgtcgaaca tgcccggctc gacgacggat
      241 ttcaaattca gatcgagaaa cgaaagcttg tcgggcgtga tcacgaattc aactgttttg
      301 ctttcgccgg gcgccagcga gatgcgctga aaatccttga gctccatgat cggccgcgtg
      361 accgagctca ccagatcgcg aatgtagagc tgcacgatct catcgcccgc gcgtttgccg
      421 gtgttcgtga ccttcacgct gacacgcgcg ttgtcacccg gaccaatctt cgctgctcta
      481 agcttcagat cgctgtagcc gaacgtcgtg tagcttaacc caaaaccgaa cggaaacaac
      541 ggttctttgt tcgcgaaaag ataaccgcgg cgcgctgtcg gtttgcgatt gtagaaaagc
      601 ggcaactgcc cgaccgagcg cggaaagctg atcgtcagtt taccggccgg attgtaatcg
      661 ccaaacagca cgtcagccac gccgacgccg gtttcctgtc ctaaataaaa accttcgaga
      721 atggcaggca cattttccgc gatgtagttg atcgagagtg gaccactgtt gatgagcatc
      781 acgatcgtcg gtttgccggt ctcgagcacg gctttgacga gatcgttctg acggcccacg
      841 agatcgatac tgtcgcggtc gccgagatga ttgtcggccc aaccttcttt gttcgtgtct
      901 tcattgccgc cgaggacgag cagcgcgaca tcggcggttt tagcaactgc cacggcctcg
      961 tttattaatt tctggtcagc cgcaggatcg ttgagagttg cgctgtcagc gaaccaatcc
     1021 cctccttctt tcgtgatctt gcatccttca gcgtaaacca ctttggctcg atcccccacc
     1081 ttgtctttta ttccctgcag cacgctgacg ccgcgtccgg gctcgtcgct gtaaccgccg
     1141 agatggacct gcgcggcgtt tggaccaatc acggcgatcg acttcaacgt gctcaggttc
     1201 aacggcagca ggttgttgtc gtttttaagc agcgtgatcg atctgcgcgc ggcttcggcc
     1261 gccagctcga tgtgctcttt cgaattcgtg acacgcgccg cacgctcgac atcgacgtaa
     1321 gggttctcaa acaacccgag caagaacttg gcgcgcaggt ttcgtgcgac cgcttcgttg
     1381 atggtcgctt cggaaacgcg gccatctttc acgagctgta ggagcgtcgg ataagaatcg
     1441 ggatcgggaa gttcagtatc gacgcccgct tcgatcgcga gctcggcagt cgtgggtttg
     1501 tcgggcgcca ggcgatgcag atcagccatc t
//
LOCUS       DASWTX010000917         1946 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_166940, whole genome shotgun sequence.
ACCESSION   DASWTX010000917 DASWTX010000000
VERSION     DASWTX010000917.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166940"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..700
                     /locus_tag="VGD38_13840"
     CDS             <1..700
                     /locus_tag="VGD38_13840"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEY0729154.1"
                     /translation="YKKSEAGNKPAPAADSVVAKAPAIEPVTWVYLTGGARLRVDEIR
                     EVSDGAWYSRGKITLFLDRERIARIEREQPGTGGGNAWRDGGWTSGNARIDHLIKVNA
                     ARFGVDPYLVFCVIEQESQFKTFARSPKGAQGLMQLMPGTARRLGVRRPYDPAENIMG
                     GVRYLRELLTMFDGRVDLVLASYNAGEGAVMKYGRNIPPYRETRDYVRKIGKRYGIDG
                     RKPQEDSDTPVPQR"
     gene            841..1464
                     /locus_tag="VGD38_13845"
     CDS             841..1464
                     /locus_tag="VGD38_13845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729155.1"
                     /translation="MVKLAKAGFKEKTIISIINARVPNFDLSADRMIELKRNGVSEKI
                     IVAMLARQEGMNLFDDESWSDEEFMSKGIDRGAGNNSGGSSSDPGTSIFGSSGGSKGQ
                     TRSNMGNGGAENDVVTTGSATVRILKPPTEAGGTDATKLEKTKSLTNESIVELVEAGF
                     SEGTIIRRIEQSPVEFDLTAAKLEELRKRRVSDRVLAAMKAAMGEDK"
     gene            1483..>1946
                     /locus_tag="VGD38_13850"
     CDS             1483..>1946
                     /locus_tag="VGD38_13850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729156.1"
                     /translation="MIVNRLLVLFICAALLLSVANAQRKTQQPKPKSTAKTTTPQKPQ
                     SELDKMGPPPPVPTLKKPPEQEVSPGDVVSVDTTEVMFPVTVRNSAGGLVNDLTRNDF
                     RVFEDNKLQPLSDLALRQVPVDVALMVDASSSVARNLDDFRRAAEGFAARLAT"
BASE COUNT          466 a          543 c          563 g          374 t
ORIGIN      
        1 ttacaagaaa tccgaggccg gcaataaacc tgctccggcc gcggattcgg ttgtcgcaaa
       61 agctccggca attgaacccg tcacctgggt ttatttgact ggcggcgccc ggctgcgtgt
      121 cgatgaaatc cgggaagttt ccgacggcgc gtggtacagc cgcgggaaaa taacactgtt
      181 tctggaccgc gagcgcatcg cccgtatcga acgcgaacag cctggaaccg gcggcggaaa
      241 tgcgtggcgc gacggcggct ggacctcggg aaatgcccgt attgatcatt taataaaggt
      301 gaatgccgcg cggtttgggg tcgaccctta cctcgtgttc tgtgtaatag agcaggagtc
      361 gcagttcaaa accttcgcgc gcagcccgaa aggcgcgcag ggattgatgc agttgatgcc
      421 gggcaccgcc cgccgtttgg gcgtgcgccg gccgtacgat ccggccgaaa acatcatggg
      481 cggcgtgcgg tatctgaggg aactgctgac tatgttcgac ggtcgggttg atttggtcct
      541 ggcgagttat aatgcgggcg agggggcggt catgaagtac gggcgcaaca ttccccctta
      601 ccgagagact cgcgattacg taagaaagat cggcaagcgc tacgggatcg acggtcgtaa
      661 acctcaggaa gattcagaca cgccggttcc gcagcgataa tttgttctac aggaaagcag
      721 ggtgagagca tgaaatcatt ggcagcacgt attctttttt cggtctccct cgccttaatt
      781 cttgccccgg gctcattggc ccaacaaacc tctcagacaa aaacgctcaa caacgcagca
      841 gtggtcaaac tggccaaagc cggtttcaaa gagaagacca tcatctcgat catcaacgcc
      901 cgcgttccca atttcgatct gtcagccgat cgcatgatcg agttgaagcg caacggcgtc
      961 agcgagaaga tcatcgtcgc catgctcgcg cgccaggaag gaatgaacct ttttgacgac
     1021 gagtcgtgga gcgacgaaga gttcatgtct aaaggtatcg atcgaggcgc cggcaataac
     1081 tccggcggca gttcttccga tcccggtacc agcatcttcg gttcaagcgg cggctcgaaa
     1141 ggtcaaaccc gttcgaacat gggcaacgga ggcgccgaga acgatgtcgt gaccacgggc
     1201 agtgctacag ttcgcatcct caaaccgccc accgaagcag gtggaactga cgcgacaaaa
     1261 ctcgaaaaga ccaagagctt gaccaacgaa tcgatcgtcg aactggtgga ggccggattt
     1321 tccgaaggca cgatcatcag acggatcgaa cagtcgccgg tggagtttga tctgaccgca
     1381 gccaagctcg aggaactgcg taaacggcgt gtcagcgatc gcgtactggc ggcaatgaag
     1441 gcagccatgg gcgaggacaa ataaaccacg aggtgaacat atatgatagt aaatcgtctc
     1501 ctcgtcttgt ttatttgtgc ggcgctgttg ttgtcggtgg ctaacgccca gcgcaaaacc
     1561 caacaaccta aaccgaaatc cacagcaaaa acgacgacac cacagaaacc gcaatcggaa
     1621 ctggacaaga tgggtccgcc gccgcccgtt ccgacgctca agaaaccacc cgaacaggaa
     1681 gtcagcccgg gcgacgtcgt ttccgtcgat acgaccgaag tgatgtttcc ggtcaccgtc
     1741 cgtaattccg ccggcgggct ggtaaacgat cttacgcgta acgattttcg cgttttcgaa
     1801 gacaacaaac tgcaaccgct gagcgatctc gcgttgcggc aagtaccggt cgacgtcgcg
     1861 ctgatggtcg atgcttcgtc gtcagtcgcg agaaacctcg acgacttccg ccgcgctgcc
     1921 gaaggctttg ccgctcgtct cgcgac
//
LOCUS       DASWTX010000918         2441 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_318049, whole genome shotgun sequence.
ACCESSION   DASWTX010000918 DASWTX010000000
VERSION     DASWTX010000918.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2441)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2441)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2441
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318049"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(150..782)
                     /locus_tag="VGD38_13855"
     CDS             complement(150..782)
                     /locus_tag="VGD38_13855"
                     /inference="COORDINATES: protein motif:HMM:NF016240.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceH family protein"
                     /protein_id="HEY0729157.1"
                     /translation="MADVLTEIETRVLGALVEKQVTTPEYYPLTLNALTLACNQKNNR
                     HPVSAYSENEVAQAVESLREKNLAYVFYGSTSRVPKYKHVVPEVLHLNAAETALMCVL
                     MLRGPQTPGELRGNASRLHEFAGLDEVEQTLSALISREPDPLVARLPRQAGQKEVRFG
                     HLLSGEIRVETLSEPEPKSPRQSLEQKVDALAAEIEKLRLQFEEFKKQFD"
     gene            complement(788..>2441)
                     /locus_tag="VGD38_13860"
     CDS             complement(788..>2441)
                     /locus_tag="VGD38_13860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729158.1"
                     /translation="DTPRPVEAADMVNLMRLRGIEVHRATKEFTVKDQKYAAGSYIIR
                     MDQPYSRMADMLLDTQYYNVTDPSPYDDTGWTMGAMRNVKTVRVVDKSVLGVEATLLT
                     QDAKVVGQLTGPASAVGYVINHNTDNTLATLRFRLKDVKMSAAEDAFKIGEQQFNTGS
                     FIIKQEANPSDLRQRLQSAVLELGLKAVGVDKLPEVKTHELAVPRIAIVHTWTNTQNE
                     GWFRIEFDRLQIPYTYISDHVIRNTPNLREKFDVLIFPPVGGTAQAIVNGMPMRGDPI
                     PWKASAVTPNFAMSPDQTDDMRGGMTVTGVANLQKFVQDGGLFITIGSSVSSIPIDYG
                     ITSGVSIQPAERLQARGSIYNGTFTDRKSPIAYGYDAGLPIYFNQAPLFQVAAGGGGG
                     FGGGGGGGGQGAGGAQSRASGRGGVNDPDVIQAMPQPRPADPNNRPDPEQDQRESPFY
                     TPPQLRPRVVLRFVADEKNLLISGMLAGGNELANRPAIVDVPVGRGHVVMFATNPMWR
                     HQTQGEFFLLFNAALNYDNLGVGRAEPARGGQGQRSTADEDQ"
BASE COUNT          476 a          756 c          691 g          518 t
ORIGIN      
        1 tccgcgcaaa ccagcgcgcc actgctggat ggaacaattc gagactcata agggagggac
       61 attatactcg tgcggcgtga ggttgcatag ctgaaacacg agcccaacaa cagcacgtta
      121 atccatcttt ccatccgtca aatctggctt cagtcgaact gctttttgaa ctcttcgaac
      181 tgcaaacgca acttctcgat ttccgctgca agtgcgtcga ccttttgttc gagactttga
      241 cgaggggatt tgggttcggg ttcggagagt gtctcaacac ggatttcacc ggataataaa
      301 tgtccgaagc gaacttcttt ctgtcccgct tggcggggca ggcgggcgac gagggggtcg
      361 ggttcgcggg agatgagggc ggagagggtt tgttcgactt cgtccaaccc ggcgaattca
      421 tgcagacgcg acgcgttccc gcgcagttca ccgggcgtct gggggccgcg cagcatcaac
      481 acgcacatca acgccgtctc agccgcgttc agatgcagca cttccggcac cacgtgcttg
      541 tacttcggca cgcggctcgt gcttccgtaa aaaacgtaag cgaggttctt ctcgcgcaaa
      601 ctttccaccg cctgcgccac ttcgttctcc gaatacgcac taaccggatg gcgattgttc
      661 ttctggttgc aggcgagcgt cagcgcgttg agcgtcagcg ggtagtattc aggcgtagtc
      721 acctgcttct ccaccaacgc ccccaacacg cgcgtttcga tttcagtgag aacgtcagcc
      781 acagatttta ttggtcttca tccgcggtcg atctttgccc ctgcccgccg cgcgccggct
      841 ctgctctgcc cacgccgagg ttgtcgtagt taagcgccgc attgaacaac aggaaaaact
      901 caccctgcgt ttgatgccgc cacatcgggt tcgtcgcaaa catcacaacg tgaccacgcc
      961 caaccggaac atcgacgatc gccggacgat tcgccaactc gtttccaccc gcgagcatgc
     1021 cgctgatgag caggttcttc tcgtcagcca caaaacgcag caccacgcgc ggacgcaact
     1081 gcggcggcgt gtagaacggg ctctcgcgct ggtcctgctc cggatcgggc cggttgtttg
     1141 gatccgccgg gcgcggttgc ggcatcgcct gaatcacgtc cgggtcgttc acaccaccac
     1201 gtcccgaagc acgcgactgt gcgccgcctg caccctgacc accgccgcca ccaccaccgc
     1261 caaatccgcc gccaccaccg gcagcaacct gaaacagcgg cgcttgattg aagtagatcg
     1321 gcaaaccggc gtcgtaacca tatgcgatcg ggctctttcg atcggtgaac gtgccgttgt
     1381 agatcgagcc gcgcgcctga agtctttcag ccggttgaat ggaaacaccg ctcgtgatgc
     1441 cgtagtcgat cggaatactg gaaacactgc tgccgatcgt gatgaacagc ccgccgtcct
     1501 ggacaaactt ctgcaggttc gcgacgcccg tcaccgtcat gccgccgcgc atgtcgtctg
     1561 tctgatccgg cgacatcgcg aagtttggcg tcacagccga agccttccac ggaatcggat
     1621 cgccgcgcat cggcatgccg tttacgatcg cctgcgccgt gccgccgacc ggcgggaaga
     1681 tcagcacgtc aaacttctcg cgcaggttcg gcgtgttgcg aatcacgtga tcggaaatgt
     1741 acgtgtacgg aatctggagc cggtcaaact cgatccggaa ccagccttcg ttctgcgtgt
     1801 tggtccacgt gtgaacgatc gcgatccgcg gcacggcgag ttcgtgcgtc ttcacctcgg
     1861 ggagtttatc cacgcccacg gctttgaggc ctaattccaa gacagcggat tgtagacgct
     1921 ggcgtaagtc tgaagggttg gcctcttgtt tgataatgaa cgagccggta ttgaactgct
     1981 gctcgccaat cttgaacgcg tcctcggccg cgctcatctt cacgtctttc aaccggaaac
     2041 gcagcgtcgc gagcgtgttg tcagtgttgt ggttgatgac gtaacccact gccgacgccg
     2101 gaccggtcag ttgtcccacg accttcgcgt cctgggtgag cagcgttgct tcaacgccaa
     2161 gcacgctctt gtcgacgacg cgcacggtct tcacgttgcg catcgcgccc atcgtccagc
     2221 cggtgtcgtc atacggcgaa ggatcggtga cgttgtaata ctgcgtgtcg agcagcatgt
     2281 cagccatgcg cgaatacggc tggtccatgc gaatgatgta agaaccggcc gcgtacttct
     2341 gatctttgac agtgaactcc ttcgtcgcgc gatggacttc aatgccccgc aaacgcatca
     2401 ggttgaccat gtcagccgct tcgacgggac gcggagtgtc g
//
LOCUS       DASWTX010000919         5652 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_343020, whole genome shotgun sequence.
ACCESSION   DASWTX010000919 DASWTX010000000
VERSION     DASWTX010000919.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5652)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5652)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5652
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343020"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1315)
                     /locus_tag="VGD38_13865"
     CDS             complement(<1..1315)
                     /locus_tag="VGD38_13865"
                     /inference="COORDINATES: protein motif:HMM:NF019902.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729159.1"
                     /translation="MQEQDGNRTFNISERLEDLRREHEALRWEGTFRDYFELVAQNPR
                     IAQLSHARINDMVHAAGVERLNEGTQHEVLSYSFFATELFGIEEPIARIVEYFKSAAQ
                     RLEVRKRILLLMGPVGGGKSTIVNMLKRGLEDWTRTPGGAVYAIKDCPMHEEPLHLIP
                     HQLRAEVEKHYGIYIEGDLCPQCRYALDKTYGGRHEDVKVHRVAFSEKERVGIGTFSP
                     SDPKSQDITELTGSIDLSTIGEVGVESDPRAYRFDGELNIANRGLMEFVEMLKVDEKF
                     LYSLLTLSQEQSIKTGRFAMIYADEVILSHSNENEYIAFAGNRKSEALQDRIILVKVP
                     YNLRVSQEERIYDKLLHQSEALRNVHLAPNTLRVAAMFAVMTRLEEPKRQNVDIVKKM
                     KLYDGEDVEGYKSKDVRELKEETVREGMDGISPRYIINRLSSALVR"
     gene            complement(1582..2523)
                     /gene="truB"
                     /locus_tag="VGD38_13870"
     CDS             complement(1582..2523)
                     /gene="truB"
                     /locus_tag="VGD38_13870"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEY0729160.1"
                     /translation="MDGLLVIDKPGELTSHDVVARVRHILHERRIGHTGTLDPFATGV
                     LVLLLGKATRLAQFLSGEDKEYDAVIRLGYSTNTGDRTGTRIDGPKDIPLENWNEQEI
                     ETALASLRGWIDQVPPMYSAKKREGKKLYELARRGEEVDREPVRVCIHEFTAIKSDGQ
                     LIKDNHDGTFDFRAHVVCSSGTYVRTLAEDFGKRLSVGAHLAELRRMRVGEFRVEAAV
                     TLDDLKTSFAEEALGEVVVAPNAALSKLPFVHLSGQDVRNVSHGREVRVEGSGWTDGE
                     NVKMCDAQEQLIAIGQYDARAQILRPRVVLLEKTTLT"
     gene            2577..3059
                     /locus_tag="VGD38_13875"
     CDS             2577..3059
                     /locus_tag="VGD38_13875"
                     /inference="COORDINATES: protein motif:HMM:NF014668.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein RecX"
                     /protein_id="HEY0729161.1"
                     /translation="MTTDEKRRQTFNRAVKLLTVKPRSVAELRERLLQGKNATADVVE
                     TVIARLEEYGYLNDERFAFSYASLKVKQRPVGRRRLERDLKLKKVENKVAEGALELVY
                     AETPEEQLIDQAIEKRLRLRGRPKTRIEAKKLFDHLLRQGFEFELVSDKVRALFDPSC
                     "
     gene            3072..>5652
                     /gene="alaS"
                     /locus_tag="VGD38_13880"
     CDS             3072..>5652
                     /gene="alaS"
                     /locus_tag="VGD38_13880"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEY0729162.1"
                     /translation="MTGNEIREIFLKYFEEHGHTPVRSSPLLPANDPTLLFTNAGMNQ
                     FKDTFLGREKREYVRAASSQKCIRAGGKHNDLDEVGKTARHHTFFEMLGNFSFGDYFK
                     QDAVRYAWDLLVNVLKLDPKRLWFTVYEGDEEVGPDEDAERFWEEVGAPRERILRFGR
                     KDNFWQMGETGPCGPCSEIHYYMGPSPDDAENSAENVNGPGDTIMEIWNLVFMQFDRS
                     EVEPGHYKLDPLPAPSVDTGAGLERLAVVLQGVKSNYDTDLIRPIIERAAQIADRHYQ
                     PETQEGFAMRVIADHARASAFAIADGILPGNEGRNYVLRKIMRRAIYQGHHTLGLEGS
                     FFNQVTDFVVNLMSDAYPELEAQREFIQKMVRLEEERFRSTLTVGLNKLDELFTSTKG
                     AMPEFKALAKLYDTFGTPRDLIRVGLEERGFAIDEDEFNRSFDAALQELQQTVATKHD
                     AKSVINPLYDTLAKRSKSLFKGYETTNVTDAKVIALIKDGEVDSLGEGEEGEAVLDQT
                     PFYAESGGQVGDVGLLTKDEALAKVFDTYSPVSGLIVHKIRVEKGVLNVGDIVAAEVD
                     IEKRDATRRNHTATHLMHAALREVLGTHVKQAGSVVAPAYLRFDYSHYQPLTQAEKDE
                     IERLVNYHIMRNEPVQTDEMAIEEAMRSGAMALFGEKYGEKVRVLSIKGVENVFSMEL
                     CGGTHVRATGDIGLFKIVSDESIASGVRRIRAITGADAYERFREAEVLVDELTSGLRT
                     SRTELVNAVSRLQDELKKARREADDLRLKIASGGASSNGDESREIAGVKVLAREASGL
                     DAPAMRQLSDTLLARIKSGVVILGRSSEGKVSLIVRTSADLTSKVPAGQVIKELAPIV
                     GGRG"
BASE COUNT         1240 a         1570 c         1619 g         1223 t
ORIGIN      
        1 cgcgaacgag cgcactcgaa agacgattga tgatgtagcg cggcgagatt ccgtccatgc
       61 cttcgcgaac agtctcttcc ttcaactcgc gcacgtcttt cgacttgtag ccttcgacgt
      121 cttcaccgtc gtagagcttc atcttcttaa cgatgtcgac gttctggcgt tttggttctt
      181 caagccgcgt catcacggca aacatcgccg cgaccctcaa cgtgtttggc gcgagatgca
      241 cgttgcgcag cgcttccgac tggtgcaaca gcttgtcgta aattctctct tcctgcgaaa
      301 cgcgcaggtt gtagggaact ttcaccagga tgatgcgatc ctgaagcgct tcagatttgc
      361 gattgcccgc gaatgcgatg tactcgtttt cattcgagtg cgacaggatc acttcgtcgg
      421 cgtagatcat cgcgaagcgg ccggtcttga tgctctgctc ctgcgaaagc gtcaaaaggc
      481 tgtagagaaa cttctcatca accttcagca tttcgacaaa ctccatcaaa ccgcgattcg
      541 cgatattcaa ctcgccgtca aaacgataag cgcgcggatc cgattcgacg ccgacctcgc
      601 cgattgttga aaggtcgata gagccggtca gttccgtgat gtcctgcgac ttcggatcgc
      661 tcggcgagaa cgtgccaatg ccgacgcgtt ctttttccga aaatgccacg cgatgcactt
      721 tcacgtcttc gtgacggccg ccgtaagttt tatccagtgc atagcggcac tgcgggcaca
      781 ggtcgccttc gatgtagatg ccgtaatgtt tttcgacttc ggcgcgcagt tgatgcggaa
      841 tgaggtgcag cggttcttca tgcatcgggc agtctttgat cgcgtagacc gcgccgcccg
      901 gcgttctggt ccaatcttcc agcccgcgct tgagcatgtt gacgattgtc gacttaccac
      961 cgccgaccgg tcccatcagc aacaggatgc gtttgcgtac ttccaaacgc tgtgcggctg
     1021 atttgaagta ctcgacgatt cgggcgatgg gttcttcaat gccgaagagc tcggtggcga
     1081 agaaactgta ggaaagaact tcgtgctgcg tgccctcgtt cagccgttcc acaccggcgg
     1141 cgtgaaccat gtcgttgatg cgcgcgtgcg agagttgcgc gattcgcggg ttctgagcaa
     1201 ctagttcgaa ataatctcgg aaggttcctt cccagcgcag cgcttcgtgt tcgcggcgca
     1261 gatcttccaa gcgttcactg atgttgaatg ttctgttgcc atcctgctct tgcatagcct
     1321 tgaaacctct tcggctttcg cgcattggac agcgtgtggg gagaggccac gcttcgtaaa
     1381 tcaaccgcca gtcgatcggg gagtgcggtt agtaaaccat tactacctcg tgatacgcct
     1441 cacgcgcgcg taagcgtgag ctgcgtcctc gaagcatcag ttctcaatga tcgtgtcaac
     1501 ggaactagtg gagggaagca cttgttggaa gcatcctgga gcgcttcctt gggactgaag
     1561 tataccacac gcgtaaagac cctaagtcaa agttgttttt tcaagcagca ctacgcgggg
     1621 acgtaagatt tgcgcacggg cgtcgtactg accaatggca atcaattgct cctgcgcatc
     1681 gcacatcttt acgttttcac catccgtcca accagatccc tcaacccgta cctcccttcc
     1741 gtgactaaca ttacgcacat cctggccgct tagatgcacg aaaggcagtt tggagagcgc
     1801 cgcattgggc gcgaccacca cctcgcccag cgcctcctcc gcaaaactcg tcttcaagtc
     1861 gtcgagcgtc accgccgcct cgacgcgaaa ctcgcccact cgcattcgac gcaactcagc
     1921 caaatgtgcg ccgacggaca aacgcttgcc aaagtcttcc gcaagcgttc gcacgtaagt
     1981 gcctgaagaa caaacaacgt gagcgcgaaa atcgaacgta ccgtcgtgat tgtccttgat
     2041 cagttgaccg tctgacttga tagccgtgaa ctcatgaata catacacgaa ccggctcacg
     2101 gtccacctct tcgccacgcc gcgcaagttc atacagcttc ttgccttcgc gttttttcgc
     2161 cgaatacatc ggcggcacct ggtctatcca accgcgcagg ctcgcaagcg ctgtttcgat
     2221 ctcctgttcg ttccaatttt cgagcgggat gtcttttgga ccatcaattc gcgttccagt
     2281 gcgatcgccc gtgttggtcg aatagcccaa gcggatcact gcgtcgtact ccttgtcctc
     2341 accgctaaga aactgagcga ggcgagtggc tttgccgagc agcaagacca gcactcccgt
     2401 cgcaaacgga tcgagcgttc ctgtatgacc gatgcggcgc tcgtgaagaa tatgacgcac
     2461 acgcgcaact acatcgtgag aagtaagttc ccccggcttg tcgattacta atagtccatc
     2521 catgcactca ttttagattg ccgaatgacg attggcgatg tgagaatcac tcgcgcatga
     2581 caaccgacga aaagcgccgg caaacattca atcgcgcggt caaactgttg actgtgaaac
     2641 cgcgttcggt ggccgaactg cgcgagcggt tactgcaagg aaagaatgcg accgcggacg
     2701 tagtggagac ggttatcgca cggctcgaag agtacggcta tctcaacgac gaacgattcg
     2761 cgtttagcta tgcgtcttta aaggtgaaac agcgcccggt cggacggcgg cgtttggaac
     2821 gcgacctcaa gctcaagaag gtcgaaaaca aagtggccga aggcgctttg gaactcgtgt
     2881 acgccgaaac gcccgaagaa cagctcatcg atcaggcgat cgagaagcgc cttcgcctgc
     2941 gtggccggcc gaagacgcga atcgaagcca aaaagctttt cgatcacctt ctgcggcagg
     3001 gctttgagtt tgaactcgtg agcgacaagg tacgtgcact cttcgatccg tcttgttaaa
     3061 ctcaaatcga catgactggt aacgaaatac gcgagatttt tctgaaatac ttcgaggagc
     3121 acggccacac gccggtgcgc tcctcgccac tgctgcccgc caacgatccg accctgttgt
     3181 ttaccaacgc gggcatgaat cagttcaaag acacgttttt gggccgggaa aaacgcgagt
     3241 atgtccgcgc ggcgtcgtcg cagaagtgta tccgcgccgg cggcaagcac aacgacctcg
     3301 acgaagtcgg taaaaccgcg cggcatcaca cgttcttcga gatgctcggc aatttttcgt
     3361 ttggcgacta cttcaaacag gacgccgtcc gctatgcgtg ggacctgctc gtcaacgttt
     3421 tgaaactcga tccgaagcgg ctgtggttta cggtttatga aggcgacgag gaagtcgggc
     3481 ccgatgaaga cgccgagcgc ttctgggaag aagtgggcgc gccgcgtgaa agaattttgc
     3541 gcttcgggcg caaagataat ttctggcaga tgggcgagac tggtccatgt ggcccatgca
     3601 gtgagatcca ctactacatg ggacccagcc ctgacgatgc ggagaactcg gctgagaatg
     3661 taaacggtcc gggcgacacg atcatggaga tctggaacct cgtcttcatg cagtttgatc
     3721 gcagcgaagt cgagccgggt cactacaaac tcgatccgct gcccgcgcct tccgtggata
     3781 cgggtgcggg tctcgagcgg cttgccgtcg tgctgcaagg cgttaaatca aactacgaca
     3841 ccgatctgat ccggccgatc atcgagcgtg cggcgcagat cgccgaccgt cattaccagc
     3901 cggaaacgca ggaaggtttt gcgatgcgcg tcatcgcgga ccacgcgcgg gcttcggcct
     3961 tcgcgatcgc ggacggcatt ctgcccggca acgaagggcg caattacgtg ctgcgcaaga
     4021 taatgcgccg cgcgatctac cagggacatc acacgctcgg tcttgagggt tcgtttttta
     4081 atcaggtcac cgattttgtc gtcaatctga tgagcgacgc ttatcccgag ctcgaggcac
     4141 agcgcgagtt cattcagaag atggtgcggc tggaggaaga gcgttttcgt tccacgttga
     4201 cggtcggctt gaacaagctc gacgagttgt ttacgtcgac aaaaggcgcg atgcccgagt
     4261 tcaaagcgct cgccaagctt tacgacacct tcggcacgcc gcgcgacctg attcgcgttg
     4321 gcctcgaaga gcgtggcttt gcgatcgatg aagacgagtt caaccgttct ttcgacgcgg
     4381 cgttgcagga gcttcagcaa accgtcgcga cgaaacatga cgccaaatcc gtaattaatc
     4441 ccctgtacga cacgctagcg aaacgttcca aatccctttt taaaggctat gaaacgacga
     4501 acgtcactga cgcaaaggtc atcgcgctaa ttaaagacgg agaagtcgac tcgctcggcg
     4561 agggtgaaga aggcgaagct gttctggacc agacgccgtt ctacgccgag agtggtggac
     4621 aggttggcga cgttggtttg ttgacgaaag acgaggcgct cgcgaaggtg ttcgacacgt
     4681 actcgccggt ttcgggtttg atcgtacaca agattcgggt cgagaagggc gtgctgaacg
     4741 ttggcgacat tgttgcggct gaagtcgata ttgaaaaacg cgacgcgacg cggcgcaatc
     4801 acactgcgac gcacctgatg cacgccgcgc tgcgcgaggt tttgggaacg cacgtcaaac
     4861 aggcgggttc ggtcgtggcg ccggcttatc tgcgtttcga ctactcgcac tatcagccgt
     4921 taacgcaggc cgagaaagac gagattgaac gcctcgttaa ctatcacata atgcgcaacg
     4981 aacctgtgca gactgacgag atggcgatcg aagaagccat gcgttcgggc gcgatggcgc
     5041 tttttggtga gaagtacggc gagaaagttc gcgtgttgtc gatcaaaggc gtcgagaatg
     5101 ttttttcgat ggagctgtgc ggcggcacgc acgtgcgcgc gactggcgac atcgggcttt
     5161 ttaagatcgt gagcgatgaa tcgatcgcgt ccggcgtgcg gcgtatacgt gcgatcacgg
     5221 gcgcggacgc ttacgagaga tttcgtgaag cggaagtgct cgtcgatgag ctcacgagcg
     5281 gcttgcgaac gtcgcgaact gaattggtga atgctgtttc gcggttgcag gatgagttga
     5341 agaaagcgcg ccgtgaagca gacgacctgc gtttgaagat tgcgagcggc ggcgcttcgt
     5401 cgaatggcga cgagtcgcgc gagatcgcgg gcgtcaaagt tttagcgcgc gaggcgagtg
     5461 gactggacgc gcccgcgatg cgacaactct cggacacgct cctggcgcgg atcaaatccg
     5521 gcgtcgtaat tctcgggcgc agtagtgaag gcaaagtctc gctcatcgtg cgcacgtcgg
     5581 ccgatctaac gtcgaaagtc ccggccggcc aggtaatcaa agagctcgcg ccgatcgtcg
     5641 gcggacgcgg cg
//
LOCUS       DASWTX010000920         2758 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_57043, whole genome shotgun sequence.
ACCESSION   DASWTX010000920 DASWTX010000000
VERSION     DASWTX010000920.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57043"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(45..>2758)
                     /locus_tag="VGD38_13885"
     CDS             complement(45..>2758)
                     /locus_tag="VGD38_13885"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IPT/TIG domain-containing protein"
                     /protein_id="HEY0729163.1"
                     /translation="FEMTFNAPAGVPYRLWLRGKALNDFWGNDSIFIQFSDSVDSNGS
                     PVFRIGTTSATEMNLEDCSGCGIQGWGWQDNGWGVGVLGPLIRFQNSGTHTIRIQVRE
                     DGLSLDQIVLSPQTYLSTAPGPLKNDNTILPKSSGSPGPTPTPTPTPTPTPAPAVTSV
                     SPNSGPTTGGTSITVTGTGFVSGASVLLGTVAATNVNVTNSTTITATTPAQSAGTVNV
                     SVTNPDNQTGTLSSAFTYSIPSQPTLPAFDRVFVVVLENQSFSNAMGGMPFLNKMAGR
                     YGNAVNFFANTQPSIGDYFWLTTGQNITNDSNFNGTVTADNIVRQLNLAGKSWRSYAE
                     SLPSVGYTGGDVYPYVKRHNPFAYFSDILNNPAQANNIVPFSQFSIDLANGQLPNYSF
                     IIPNQHSNSHDCPPSIPNCTNADKLTYADQWLQENIDPLIASQAFRQNGLLIITFDES
                     TNDDTQHGGGHIVTLVISPKAKQNFQSNTFYQHQSTLRLTAEALGLTSFPGAAATAPN
                     MAEFFTTTPNTAPIVSAVSPTSGPTTGGTAVTISGTGFADGATVTFGGTAASNVNVLG
                     STTITAVAPAHASGAVNVVVTNPGGQSGTRPNGYTYTTSGTPAPTVSTVSPTSGPTAG
                     GTQITITGTNFALGATVTVGGTPATGVLVSNSTTITATTPAHAAGTVDVMVTNTTGQS
                     GTKTDAFTYTAPGGETVLLADDFNDGSLNTSKWQANDLFSGFTDSTVAIAETQNLAIG
                     PLKQNTSGSHYNGIRSLTAFDFTGGYSYVQLAQGPNALTAADAFFTLGRDVDNCYRMY
                     VEAGSLIVQKKVGGGKSTMLTVTFNATNHAFWRIRHDAISGQVVFEVAPANAGAPGAW
                     TQLYAESWNTSAVPLTSVLFELKAGTWRVEGSNPGTVIFDNFKAARP"
BASE COUNT          520 a          775 c          864 g          599 t
ORIGIN      
        1 cagatttcac aatggttttc gtgaaatctg tggctttggt gtgtttacgg tcgggcggct
       61 ttgaagttgt cgaagatgac ggtgccgggg ttgctgccct cgacccgcca tgttccggcc
      121 ttcagttcga agagcaccga ggtcaacggt accgccgaag tgttccacga ctcggcgtag
      181 agttgagtcc aggcgccggg cgctccggca ttggcaggcg cgacttcaaa cacaacctgt
      241 cccgagatcg cgtcgtgcct gatgcgccag aaggcgtgat tcgtcgcgtt gaacgtgacg
      301 gtcagcatcg tcgacttccc gccgccgacc ttcttctgca caatcagact tcccgcctca
      361 acgtacatcc ggtaacagtt atcgacgtcc cgtccgagcg tgaagaacgc gtcggccgcg
      421 gtcagcgcgt tcggcccctg agccagttgg acgtaagagt aaccaccggt gaagtcgaaa
      481 gccgtgagcg aacggatacc gttgtagtgt gacccgctcg tgttctgctt gagaggtccg
      541 atggcgagat tttgcgtttc agcgatcgcc acggtcgaat cggtgaagcc gctgaacaga
      601 tcattcgcct gccacttcga agtgttcagc gaaccatcgt tgaagtcgtc agccagcagc
      661 acggtttcgc cgcccggcgc agtgtaggtg aaggcatccg tcttcgtgcc actctggccg
      721 gtggtgttgg tcaccatgac gtcaacggtc ccagccgcgt gtgcgggagt ggttgcggta
      781 atcgtcgtgc tgttgctcac gagtacaccc gtcgccggag tgccgccgac ggtgacagtc
      841 gcgcccaaag cgaagttagt gcccgtaatc gtgatctgcg ttccgcctgc ggtcggaccg
      901 gaagtcggcg aaacggtaga cacggtcggc gccggagtgc cggaggtagt gtacgtgtaa
      961 ccgttgggcc tcgtgccgct ctggccgccg gggtttgtaa ccacgacgtt aacggcgccg
     1021 ctcgcgtgtg ctggggcaac agctgtaatc gttgtactgc cgagcacgtt cacattcgaa
     1081 gccgctgtac cgccgaaagt caccgtcgcg ccgtcggcga aaccagtgcc ggagatggtc
     1141 acagcagtcc caccagtcgt tggcccggac gtcggcgaca ctgcgctaac gatcggcgcc
     1201 gtgttcggcg tggtggtaaa gaactcagcc atgttcggcg cggtcgcggc agcgcctggg
     1261 aacgaagtca acccgagcgc ttccgcagtc agtcgcagcg tgctctgatg ctggtagaaa
     1321 gtgttcgatt ggaagttctg cttggctttc ggactgatca ccagcgtcac gatatgaccg
     1381 ccaccgtgct gtgtatcgtc gttggtcgac tcgtcaaatg taatgatcag caaaccgttt
     1441 tgcctgaacg cctggctcgc gatcaacgga tcgatgttct cctgcaacca ctggtcggcg
     1501 taggtcaact tgtccgcgtt ggtgcagttc ggaattgacg gcggacagtc gtgcgagttg
     1561 ctgtgctggt tcggaatgat gaacgagtag tttggcaact ggccgttcgc cagatcgatt
     1621 gagaactgcg aaaacggcac gatgttgttc gcctgagccg gattgttcag tatgtctgag
     1681 aagtaagcaa acgggttgtg ccgtttgaca tacggataca catcgccgcc ggtgtaacca
     1741 acggacggca agctttccgc gtacgaacgc cagctctttc cggcgagatt gagctgccga
     1801 acgatgttgt cggccgtaac cgtgccgttg aagttgctgt cgtttgtgat gttctgaccc
     1861 gtcgtcagcc agaagtagtc gccgatcgac ggctgcgtgt tagcgaaaaa gttgactgcg
     1921 tttccataac ggcccgccat tttgttcagg aacggcatgc cccccatcgc gtttgagaaa
     1981 ctctggttct cgagcacgac gacgaagacg cgatcgaacg ccggtagcgt cggctgggat
     2041 ggaatgctgt aggtgaaagc cgacgacagc gtgcccgttt gattgtcggg gttggtgacg
     2101 ctgacgttga cggtgccggc gctctgtgcc ggcgtagtcg cggtgatcgt ggtgctgttt
     2161 gtgacgttta cattcgtcgc cgccacagtg ccgagaagaa cactcgcgcc tgagacgaag
     2221 ccggttcccg tgacagtgat cgacgttccg ccggttgttg gaccggaatt cggcgaaacg
     2281 gaagtcaccg caggcgccgg tgttggcgtc ggagtcggag tgggcgtcgg cgtcggtccc
     2341 ggcgagccac tcgatttcgg cagaatcgtg ttgtcgttct tcagcggacc gggcgccgtg
     2401 ctgagatacg tctgcggcga aagcacgatc tgatcgagcg acaggccgtc ttcacgcacc
     2461 tggatccgga tcgtgtgtgt gccgctgttc tggaaccgga ttagtggacc aagcacgccc
     2521 acaccccaac cgttgtcctg ccagccccag ccttgaatgc cgcagcccga acagtcctcg
     2581 agattcattt ctgtcgcgct ggtggtgccg atacgaaaaa ccggcgaacc attgctgtcc
     2641 acactgtcag agaactgaat gaagattgag tcgttgcccc agaagtcgtt caacgcctta
     2701 ccgcgcaacc acagacggta cggtactccc gctggagcgt tgaaagtcat ttcgaaat
//
LOCUS       DASWTX010000921         3526 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_229723, whole genome shotgun sequence.
ACCESSION   DASWTX010000921 DASWTX010000000
VERSION     DASWTX010000921.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3526
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229723"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1084
                     /locus_tag="VGD38_13890"
     CDS             <1..1084
                     /locus_tag="VGD38_13890"
                     /inference="COORDINATES: protein motif:HMM:NF020037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEY0729164.1"
                     /translation="TSDCVKVLDLDGNLIYINEQGQKLLEASRIDALLGLSWVNLWSG
                     EDRRHAKAAVQNARNGATGSFRGSGKTFKGKLKWWHTVISPMYGANGNVERILAVSRD
                     MTEHELSLRAIEESEQHRQLTEREFSTLERELMQLTVRLFDIQDQERRRIARELHDGT
                     AQNLFAISMNLQKLFQLSSGNEEIQRLVLECQALDEQSLKEIRTLSYLLHPPLLDQAG
                     LVSALQWYVEGFTKRSGIFVEVFAEPIGRLQSEVEMTLFRVVQEALSNVRRHSGSETA
                     SIRLARRDSEVVLQIKDQGKGLALADCSPDTNGALSLGVGIPGMKQRLRQLGGTLDIT
                     SNNGGTTVSAVVPIVNGEDYGTNTGG"
     gene            1062..1709
                     /locus_tag="VGD38_13895"
     CDS             1062..1709
                     /locus_tag="VGD38_13895"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0729165.1"
                     /translation="MVRILVADDHDVVRRGLREQLSSHDGWEICGEARNGREAVQMAL
                     KLSPDVAVIDLSMPELNGLEATRQIRRELPRTEVLIFTMHETEQLIREVLSAGARGYV
                     LKSDAGRHLTSAVEALSHRRPFFTARVSEALLDAFLKSNSRKDEGSAFRTLTDREREI
                     VQMLAEGSSNTEIAAKLSISIKTVETHRATVMRKLDISSIVELVHYAIRNHLVEA"
     gene            1871..2434
                     /locus_tag="VGD38_13900"
     CDS             1871..2434
                     /locus_tag="VGD38_13900"
                     /inference="COORDINATES: protein motif:HMM:NF018590.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1269 domain-containing protein"
                     /protein_id="HEY0729166.1"
                     /translation="MSDLVAFVFKDPFRAPEVLNELRRRDWTWVRDLDEAVAVTVAED
                     GKTRVQLSVDPSTRDGASWARLWGSLLSSTLFMPLTEVMVKAADGLTCSPKQPCDKRR
                     PPDETIVESQWWCDSLEPANDFKRDVAALMAGNASAIFMLLRAQDTAAILSQLGNYGN
                     TIVHTSLSKEQDRKLLELLANGNNSRQ"
     gene            2431..3147
                     /locus_tag="VGD38_13905"
     CDS             2431..3147
                     /locus_tag="VGD38_13905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729167.1"
                     /translation="MSTRETRTVIPMYYTKMKRRWVAASTVVLLLVSSAFTGSLAQTK
                     KKRTIKYYTVPANQVMRVRLNDELDSEKARVGDTFTSTLVDPVYSKNGLVLAPQGSIV
                     GGRVTSVQRAQKKGKPAELNVQFTSLELPNGYRRALNGSLTDLESSTGTSDNEGTVTA
                     HKTSHRKAKFIGGGAGGGAIIGAIAGGGKGLAIGAGVGALTGAIAGRVKKGHEVKVKS
                     GTEFGVLLNAPVSFPEYRAG"
BASE COUNT          814 a          926 c         1064 g          722 t
ORIGIN      
        1 cacctctgat tgcgtaaagg tcctggacct cgacggcaat ctcatctaca tcaacgaaca
       61 ggggcaaaaa ctcctcgagg ccagccgcat cgatgcactg ctgggattgt cgtgggtcaa
      121 cctgtggagc ggtgaagatc gacggcatgc gaaagccgcg gtccagaatg caagaaacgg
      181 agcaacggga tcgtttcgtg gttcaggaaa gacattcaaa gggaagctga agtggtggca
      241 cacggtgatc tcaccgatgt acggcgccaa tggaaacgta gaacgaatcc ttgcagtgtc
      301 gcgcgatatg accgagcacg aactttcact cagagcaatc gaggagagcg aacaacatcg
      361 ccagcttacc gaacgggaat tctcaactct ggagcgcgag ttgatgcaac tcacggttcg
      421 tctcttcgac attcaggatc aagagcggcg caggattgcc cgtgagcttc acgacggcac
      481 ggcgcaaaac ctgtttgcga tctcgatgaa cctgcagaag ctgtttcagc tcagttccgg
      541 caacgaggag atccagcggc tggtgctcga gtgtcaggca ctcgacgaac agtctcttaa
      601 agagattcgc acgttgtcgt atctgcttca tccgccgcta ctcgatcagg cgggtttggt
      661 ctccgcgctt cagtggtacg tcgaaggttt cacaaaacgc agcggcatct tcgtcgaagt
      721 gtttgccgag ccgatcggcc ggcttcagtc ggaagttgaa atgacgctgt tccgtgtggt
      781 gcaggaagcg ttgtcgaacg tgcgccgcca ctcgggtagc gaaaccgcga gtatcagact
      841 ggcacgtcga gatagcgaag tagttttaca gatcaaagat caaggtaagg gtctcgcttt
      901 agccgattgt agtcccgaca caaacggcgc gctttcactc ggagtcggta ttcccgggat
      961 gaaacagcgg ttacgccagt tgggtgggac tcttgacata acttccaata acggtggcac
     1021 tacagtctcg gccgtagtgc cgatcgtaaa cggggaggac tatggtacga atactggtgg
     1081 ctgacgatca cgatgtggtt cgccgtggtt tacgcgaaca gctaagctca cacgacggct
     1141 gggagatctg tggggaagcg cgcaacggcc gcgaggccgt gcagatggcc ctgaagttgt
     1201 cacccgacgt cgcggttatc gacttgtcga tgcccgaact caatggactc gaagcaacgc
     1261 gccagatacg ccgcgagctg ccgcgaactg aagtgctgat cttcacgatg catgaaacgg
     1321 agcaactaat ccgcgaagtg ctttcggccg gggcgcgtgg ttacgtgttg aagtctgacg
     1381 ccgggcggca ccttaccagc gccgttgaag cgctatctca tcgccggcct ttcttcacgg
     1441 cgagagtctc cgaagccctg ctcgatgcgt ttttgaagtc gaactcccgg aaagacgagg
     1501 gctcggcgtt tcgcacgctc accgatcgcg agcgggagat cgtccagatg ctggcggaag
     1561 gcagcagcaa cacggagatc gccgcgaaac tctcaatcag catcaagacc gtagaaactc
     1621 accgcgccac ggtgatgcgc aagctcgaca tcagttccat cgtggaactg gttcattacg
     1681 cgattcgcaa tcacctcgtc gaagcttgac gccatttcgc ggtaatcacg cacacaagct
     1741 acataaacgc cccacactga aatacagact ccacccgatt tgcgagcgtg gcccgggcct
     1801 cttattgtga gaacggtcgg acacctcgtg ctcgcttttt gtttgaatcg gacaccaaac
     1861 gagctatgtc gtgagtgatt tagttgcttt tgtgtttaaa gacccgtttc gagctcccga
     1921 agtgctgaac gagctcagaa gacgtgattg gacatgggtg cgagacctcg acgaggcggt
     1981 cgccgttacg gtcgccgagg acggcaagac gcgtgttcaa ctgagtgtcg atccctcgac
     2041 tcgcgacgga gcgagttggg ccaggctatg ggggtcgttg ttgagttcga cactgttcat
     2101 gccgttgacg gaagtgatgg tcaaggcagc ggacgggctg acctgttcac ctaaacaacc
     2161 gtgcgacaaa cggcggccgc ctgacgagac gatcgttgaa tcgcaatggt ggtgcgattc
     2221 acttgaaccg gcaaacgatt ttaagcgaga cgtcgccgct ctgatggccg gtaacgcatc
     2281 ggccatcttt atgttgttac gcgcgcagga tacagccgcg attctcagtc agctgggcaa
     2341 ttacggcaac acgattgtcc acacgtctct gagcaaggaa caagaccgga agctgctcga
     2401 gctgttggct aacggcaaca attcccggca atgagtacga gagaaacacg cacggtgatt
     2461 ccaatgtact acacgaagat gaaacgaagg tgggtcgcgg cttcgaccgt ggtgttgctg
     2521 ctggtgagtt cggcgtttac cggaagtctg gcgcagacaa agaagaagcg gacgatcaag
     2581 tactacacgg tgccggcgaa ccaggtcatg cgagtgcggc tgaatgacga actggattcg
     2641 gagaaggccc gcgtcggcga tacgttcacc tcgacgctgg tcgatccggt ttactcgaag
     2701 aacggtcttg tgctcgcgcc gcagggcagc atcgtcggcg gccgggttac gagcgttcag
     2761 cgtgcgcaga agaaaggtaa gccggccgag ctcaacgttc aatttacttc gttggaattg
     2821 ccgaacggat accgcagagc actgaacggc tcgttgaccg atctcgagtc ttcgacggga
     2881 acgagtgaca acgaaggaac ggttacagcg cacaagacca gccatcgaaa ggccaagttc
     2941 atcggcggcg gcgccggtgg tggcgcgatc atcggagcaa ttgccggcgg cggcaaggga
     3001 ctagcgattg gtgctggagt gggcgcgttg actggagcga tcgcggggcg ggtgaagaaa
     3061 ggccatgaag tgaaggtgaa atccggaact gagttcggcg tgctcctgaa cgcgcctgtt
     3121 tcgtttccgg agtatcgggc tggttgatag tggttacagt ccgaagcttc aaggcgtgtg
     3181 ggggtgcaga ttcacaggag gaatgcactg aaacgaccac acgccggtag ggccggggtt
     3241 gacgagagtc aaggggcgcc ccggccctca tctttaatcc tcacacgcag aaaaattaaa
     3301 gcttgaagaa aaacggattc gacgttaata atgtgcggca gcgtacactc acgtttttta
     3361 gaggttcatc gtgactcccc aacgtattcg gcgaacccgg tcggtatacc ttgatccgtc
     3421 gtttcgaaat gccctcacga tctccattct cgtctcagta gcttattaca tcacggcgaa
     3481 gatcggattc tggttcagtc tgcaacccgg ttccgtgtcc accctg
//
LOCUS       DASWTX010000922         2118 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_57061, whole genome shotgun sequence.
ACCESSION   DASWTX010000922 DASWTX010000000
VERSION     DASWTX010000922.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2118
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57061"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1095)
                     /locus_tag="VGD38_13910"
     CDS             complement(<1..1095)
                     /locus_tag="VGD38_13910"
                     /inference="COORDINATES: protein motif:HMM:NF018899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HEY0729168.1"
                     /translation="MLGIFVSFATPPRVTAQTQQRLVENVEIIGNRRLRKDDILYYIQ
                     TRPGDVYNVDQVQRDYQTLLSLTFFDKTATRVLTENGPRGGVNIIFEVKELPIIRDLT
                     FSGLKSVPESDVLKAFRERRVGVSKESTYDPVKVRTAMRTIKELLSAAGHPNATIEER
                     TEEVSATSLAIEFVIDEGDRVRVVDIQFEGNQVFSDGSLRGAMRFVKEAGLITRFKGS
                     DILDREKLEYDLRLVDNYMRSKGYLQARHGEPRVESVGPRRTGFPILPLPFLSSVDEG
                     LRVTVPIVEGKVYRLGEFKVEGNSIFSEQQIRAVIGLNQGDIADGEKVSKGLFENLKK
                     FYGQQGFIEYTAEPVPTFKDNPQNPNEGIVD"
     gene            complement(1417..>2118)
                     /locus_tag="VGD38_13915"
     CDS             complement(1417..>2118)
                     /locus_tag="VGD38_13915"
                     /inference="COORDINATES: protein motif:HMM:NF019344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY0729169.1"
                     /translation="IGSPPGYVGHEEGGQLTERIKRSPYSVLLFDEIEKAHPDIFNIL
                     LQVFEDGILTDALGNTVDFKNAIIIMTSNIGARFIQKKGTLGFQANTDASREKVEEMV
                     MSSVRQTFNPEFINRLDEIIIFDQLLDHELLEVVQLQVEQINKTMSRHGFEVRLTDEA
                     KRWIVDKTCADRLYGARPIRRALQKYVEDPLSEALIQGQLDGSSLVEVFLNGNELDFR
                     PAGVETADDAALLIH"
BASE COUNT          491 a          589 c          570 g          468 t
ORIGIN      
        1 gtcgacaatg ccttcgttcg ggttctgcgg attgtctttg aatgtcggga cgggttcggc
       61 ggtgtactcg atgaaaccct gctggccgta aaacttcttc aggttctcga aaagaccttt
      121 actgactttt tcgccgtcag caatgtcgcc ctggttcaaa ccgataaccg cgcggatctg
      181 ctgttcggag aagatcgagt taccttcgac tttgaactcg cccagccggt agaccttgcc
      241 ttcgacaatc ggaaccgtga cacgcaatcc ctcgtctacc gacgaaagaa acggcaacgg
      301 caggatcgga aaacccgtgc ggcgagggcc gacgctctcg acacgcggct caccgtgacg
      361 cgcctgcaag tagcccttcg aacgcatgta gttgtcgacg agccgcaggt catactcgag
      421 tttctcgcgg tcgagaatgt ctgaaccttt gaaacgagtg atcagacccg cttccttgac
      481 gaacctcatc gcaccgcgca aagagccgtc gctgaaaacc tggttacctt caaactgaat
      541 atcgaccaca cgaacgcggt cgccttcgtc gatcacaaac tcgatcgcca gcgaggtcgc
      601 cgaaacttct tcagtccgct cttcgatagt cgcattcgga tggccggcgg ccgaaaggag
      661 ttccttgatc gttcgcattg cggtgcgaac tttcaccgga tcgtaagtgc tttccttcga
      721 aacacccacg cgccgctcgc ggaatgcctt gagcacgtct gattccggaa cgctcttgag
      781 cccggagaac gtcaggtcgc ggatgatcgg aagttctttg acttcgaaga tgatgttcac
      841 gccgccgcgt ggaccgtttt cagtcagcac acgtgtggcc gtcttgtcga agaaggtcaa
      901 cgagagcagt gtttgataat cacgttgaac ctggtcgacg ttgtagacgt cacccgggcg
      961 ggtttgaatg taatagagaa tgtcgtcctt acgcagacgg cgattgccaa tgatctcgac
     1021 gttttcaact agacgttgtt gcgtctgggc agtgacgcga ggtggagtcg cgaagctgac
     1081 gaaaattccg agcaataagc caaaacaaaa gagccaggac gcgcgatatg agtgcatagg
     1141 caccaattcc ctcagcagtt ctttcggggc ctcagaaact tcggggagcg aaattgagtg
     1201 aataatagta cagagactaa aaattaccgg caaagctgct cgctactgta ctggatcgaa
     1261 gacgctggtt tgattcagcg ccgggagagc cagttgccag cttttgagca gcaaagtggc
     1321 gcattataag gcaaaaaagt ggaaagtcca aagggccaca gataacccag accggtgtca
     1381 tctgtggccc aaaagccttt gcgccaaaca agttactcag tgaatcagga gcgcggcgtc
     1441 gtcagcagtt tccaccccgg ccgggcggaa atccagctca ttgccgttca gaaatacttc
     1501 gaccagcgac gaaccgtcca actgcccctg aatcaacgcc tctgataacg gatcttccac
     1561 gtacttttgc agcgcccggc gaatgggtct ggcgccataa agccggtcgg cgcacgtttt
     1621 atccacaatc cagcgcttcg cttcgtcagt caaccggacc tcgaacccgt gccggctcat
     1681 cgtcttgttg atctgttcga cctgaagctg gacgacttcg agcaactcat ggtcgagcaa
     1741 ctggtcgaaa atgatgatct cgtcgaggcg attgatgaac tccggattga acgtctgacg
     1801 cacggacgac atcaccatct cttcgacttt ttcgcggctg gcgtcggtgt tcgcctggaa
     1861 cccgagcgtg cccttcttct gaatgaagcg ggcgccgatg tttgaagtca tgatgatgat
     1921 ggcgttcttg aaatcgaccg tgttgcccaa cgcgtcggtc aggataccgt cttcaaacac
     1981 ctgaagcagg atgttgaaga tgtcaggatg agccttctcg atctcatcga acaacagcac
     2041 cgagtaaggc gaacgcttga tccgctcggt tagctgtcca ccctcttcat gacccacgta
     2101 gcccggcggc gaaccgat
//
LOCUS       DASWTX010000923         5421 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_121209, whole genome shotgun sequence.
ACCESSION   DASWTX010000923 DASWTX010000000
VERSION     DASWTX010000923.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5421)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5421)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5421
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121209"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..618
                     /locus_tag="VGD38_13920"
     CDS             <1..618
                     /locus_tag="VGD38_13920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729170.1"
                     /translation="LLLTGTVQNTSCSKDADYVRCNVDLNLKFTNTGSTPLIILQPQG
                     EYEFWHGGTSLALSKEDSRTGSFVYDASAWPSVYEYPMYQNLANLLEKSVPPTGITRV
                     LPPNASWSWDTSITLNLQEGNTCNHRVGVEIGWEEIKRRTAPLWLRVSYEMWPFNVEN
                     FKPNLGGILQKRWQSHGALYLEEKSGRYWHAAVTSEPIEFRLDPG"
     gene            complement(669..2135)
                     /locus_tag="VGD38_13925"
     CDS             complement(669..2135)
                     /locus_tag="VGD38_13925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="B-box zinc finger protein"
                     /protein_id="HEY0729171.1"
                     /translation="MSTPEGVFEADLETLKQWIAEGCVLPTDKVTKGNLSWIEAGRVP
                     KLKGAFNGERTPVSAPANNSPKIDSFEAFVNSSTAYGTQPSQSMAETSWQEPPRVETP
                     PKVDTQPNTAVCQNHPEAAPEYVCRTCAAVFCKVCPRFTEKVPICPLCGDLCREYRTV
                     TEKAARAELQGSGFGVEDFVRAIRYPFNHKVALFSGALIYGFLLLAGVRGSVVAAVLL
                     FGCISHVISQVAWGRLNRSFMPDFSAFSLWDDLVVPLFLGVGIMIVTWGPVIALVIAL
                     MFGVLSGGDVPTSPLEASPVADSTGLTDEDLKVLMDPEGDPEKQAEANKKLQQLRPGA
                     DIAREAERSQAESSDPLGPLGDLLPYLGAGLFIVSLFLLFLGWGVFYYPMALTVAGYT
                     QSFGSVINPLVGLDTIRRMGVTYFKAFGMVVVVQVISFVVGMIVFFITSPLALPFMGN
                     VVGNFINATFTFYFNLVVACILGLSLFKCADRLGISVD"
     gene            2425..4125
                     /locus_tag="VGD38_13930"
     CDS             2425..4125
                     /locus_tag="VGD38_13930"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY0729172.1"
                     /translation="MFTTLAPQSWPARAKKRSLLVTLSVLLLVLYSFGASAQTPGKPP
                     TASISGRVTVDGKAAPGITIAATTSSSPLDNRTVAKATTDDDGKYQLTGLAAGQFTIM
                     PLAKAFVEGTSGAYRQPGQSISVGEGETITKIDFALVRGGVITGRITDTDGRPVIGER
                     VNVVAGDAPGSGRAMTMFDGPRNKTDDRGVYRVYGLGPGNYKVSIGQAPGSGGVASMG
                     MGGSQYRQTFYPGVAEEAKATILEISEGPELSNIDIVAGRSGRGFSVSGRVVDADSGQ
                     PVPNVYVAHSSFNEGTQQLGGMNFSGGQTDANGKFRLDDIQPGRYAAYMVATGEGATS
                     YSDQTPFVVSDADVSGVEIKIHRGATISGVAVIENNFDPAVASLLQTVALFAFTQTKG
                     GAPSFSRSPINADGQFSFAGLAPGKVHINMVGFPTPPKGLTLARTEVDGIEQREGIEV
                     TAGAKITGVRLVFSYGAGSIRGQLKSEDGVLPAGLTLQVLVGPPGGGPRQFSAGVDAR
                     GHFVVQNVPPGTYEMSVMTFGPNQTPSMYTPEPRTVSVESGPVQVVLVVNFAKKAAPQ
                     "
     gene            4122..>5421
                     /locus_tag="VGD38_13935"
     CDS             4122..>5421
                     /locus_tag="VGD38_13935"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0729173.1"
                     /translation="MKTLLALVLILSGVVSALAQSQPAAKSTASPSPTTIEKATENPP
                     ATGSIKGRVVADDGRPVVNAVLMAQAINGQPSARPAQVDSEGKFSFDELPSAAYVVFA
                     MAPGYIDEAMSTSDPNDWPRHLIGSQLRIKMIKGGVITGKVTNLKGDPIVGVPVQAMS
                     LNNPAWSPTDFLGGGGAESDDRGVYRIYGLRPGPYIVSAGGSGQFGFARSNGFDLDVP
                     TYYPAATRDTAIPVTVRSGDETAGIDIKYIGGEGHRVSGFVMGGIDGGPSAASGAIVI
                     FLSHAGTQSVLLMAISSPLDQRRPFGFNGVADGEYDLFATFQTGQQANASLVATKRVT
                     VRGGDLTGVELNLVPLASIAGAITLQPIKPEDKCDERGSQLIETVFAARRDDPRKSGS
                     QIMTRMLAGLGGSLNAKGEFIARNLDAGRYRFDIKLPTDAW"
BASE COUNT         1253 a         1532 c         1512 g         1124 t
ORIGIN      
        1 ttacttctga ccggcacagt tcaaaacacc agttgctcca aagacgcaga ctatgttcgc
       61 tgcaacgtcg acctgaacct gaaattcacg aacacaggca gcacgccgct gattatcctg
      121 cagccacaag gcgagtatga attctggcac ggaggaactt ctctcgcact ttctaaggaa
      181 gactcacgca cgggttcgtt tgtttacgac gccagcgcct ggccgtctgt ttatgaatac
      241 ccgatgtatc agaacctcgc gaacctgttg gaaaaaagcg ttcctcccac aggcatcacc
      301 cgcgtgttac caccgaatgc gagttggagt tgggacacat cgattacgtt gaatcttcag
      361 gaagggaaca cgtgtaatca ccgcgttgga gttgagatcg gttgggaaga gatcaagcgg
      421 cgaaccgctc ctttgtggtt gcgagtgtct tacgaaatgt ggcccttcaa cgtcgagaac
      481 ttcaaaccca acctcggcgg cattctacag aaacgatggc agagccacgg agcgttgtac
      541 ctggaagaaa aatccggcag gtattggcat gcggcagtca cttcggagcc gatagaattt
      601 cgtctagatc caggttagaa ggtcgtcgct gaactaaggg cggagttcaa ccaagcgcag
      661 gtcgtcaatc aatccacgct gatgcccagg cgatccgcgc acttaaatag cgagaggcca
      721 agaatgcacg cgaccacgag attgaaatag aaagtaaacg tcgcgttgat aaagttgccc
      781 accacgtttc ccataaacgg cagcgcgagt ggtgaggtta tgaaaaaaac tatcatgccg
      841 actacaaacg agattacctg gaccaccacg accattccga acgccttgaa gtaagtgact
      901 cccattcgcc gaatcgtgtc caatcccaca aggggattaa tcaccgagcc aaagctttgt
      961 gtgtagccag cgactgtgag agccatcggg taatagaaca cgccccagcc aagaaagagc
     1021 aggaacaagg aaacgatgaa cagtccggcg ccgagatagg gcaacaagtc gccgagaggt
     1081 cccagtggat cactcgactc ggcttgagag cgttcagctt cacgagctat atccgctccc
     1141 ggccgcaact gttgcagctt cttgtttgct tcggcttgtt tttccggatc accttcggga
     1201 tccatgagta ccttgaggtc ttcgtccgtt aaaccagttg agtccgcaac cggactcgcc
     1261 tctagcggcg aagttggcac gtcaccgccg ctcaggactc caaacatcaa cgcgatcacg
     1321 agagcgatca ccggacccca cgtaacaatc atgattccca cgccgagaaa cagcggaacg
     1381 accaggtcgt cccaaagtga aaacgcgctg aagtcgggca tgaaactacg attgagcctg
     1441 ccccacgcga cctggctgat gacgtgtgag atacatccga acagcagcac cgccgccacc
     1501 acgctgccac ggacacccgc cagcaaaagg aagccataaa tcagtgcccc gctgaacaac
     1561 gcaaccttgt gattgaacgg atagcgaatg gcgcgaacga aatcctctac tccgaaaccg
     1621 gaaccctgaa gttcagcacg cgcggccttc tctgttaccg ttcggtactc acggcaaagg
     1681 tcgccacaca acggacagat cggcaccttt tcggtaaacc tcggacagac cttacaaaac
     1741 actgcggcgc acgtccggca cacatactcc ggagccgctt caggatggtt ttgacagaca
     1801 gcggtgttgg gttgagtgtc aactttgggc ggagtctcaa ctcgtggcgg ttcttgccaa
     1861 ctcgtttccg ccatggattg gcttggctga gtcccgtaag cagtgctgga atttacaaaa
     1921 gcttcaaatg agtcgatctt cggtgagttg tttgcgggcg ctgagacagg cgtccgttcc
     1981 ccattgaacg cgccttttag cttgggcaca cggcccgcct cgatccagct caggttgcct
     2041 ttggtaactt tatcggtggg tagaacgcag ccttcggcaa tccattgctt caacgtctcg
     2101 aggtcggcct cgaagactcc ttctggcgta ctcacacgcc aaacttcagg ttgtgcactc
     2161 ataaaatgtt tgacctcttt gggatggcag gttcccgtgt ggttcaggtg gtctgcgcgg
     2221 ttggggcaga ggtagccgat taaggtatcg gcaggagcca ctgggccaat actaaagccc
     2281 tgaatttgcc tacgtcaaca atttctttta acccggccag ggggctcccg gccgcgccaa
     2341 aaaccttggt tactcccatg aaccaaagta agatagcgcc tcagaaacgc agcaaactct
     2401 atactttcct aaggctcgtc tctgatgttt actactctcg ctcctcaatc gtggccggca
     2461 cgcgcaaaga agcgttcgct tcttgttacg ttgtcggtgc ttttgcttgt cctctattca
     2521 tttggcgcga gcgcacaaac gcccggcaaa cctccaactg catcgatttc cgggcgcgtc
     2581 accgtcgacg gcaaggccgc gcctggcata acgatcgcgg ccacgacaag cagttcgcca
     2641 ttggacaatc gcacggtcgc caaggcgacg actgatgacg acggcaagta tcaactaacc
     2701 ggactcgcag ctggacagtt tacgatcatg cccctggcga aggcgttcgt ggagggtacg
     2761 agcggcgctt acagacaacc gggacaatcg atatctgtcg gcgagggcga aacgatcaca
     2821 aaaatagact ttgctttagt ccgtggcggc gtgatcaccg gacgcatcac cgacaccgac
     2881 gggcgtccgg taatcggtga acgggtcaac gtcgttgccg gggatgctcc tggtagtggt
     2941 cgtgcgatga ctatgtttga tggaccacga aacaaaacgg acgaccgcgg cgtctatcgc
     3001 gtttatggtc tgggcccggg caattacaag gttagcattg gtcaggcgcc tggttcgggc
     3061 ggcgtggcaa gtatgggaat gggtggaagc caatacaggc aaaccttcta tcccggcgtc
     3121 gcagaagaag ccaaagcgac gatccttgaa ataagcgaag gacctgagct cagcaacatc
     3181 gacattgtag ccggcagatc gggacgcggc ttttccgttt ccggtcgtgt tgtggatgcg
     3241 gattccggcc agccggtacc gaacgtgtac gtcgcgcact cttcgtttaa tgagggaaca
     3301 cagcaactcg gaggcatgaa cttcagcggc ggccagaccg acgccaatgg caagtttcgt
     3361 ttagatgaca tacaaccggg acgttacgcc gcttatatgg tcgcgaccgg ggaaggtgct
     3421 acctcgtaca gcgaccaaac gccgtttgtt gtttccgatg ccgacgtctc gggcgtcgag
     3481 atcaagattc atcgcggtgc gacaatcagc ggagtcgcag ttatcgaaaa caatttcgat
     3541 ccggcggtgg cctcgttgct ccaaacagtt gccttgtttg ccttcaccca gaccaagggc
     3601 ggcgctcctt cgttcagccg cagcccgatc aacgccgatg gacaattcag tttcgccgga
     3661 ctggctcccg ggaaagttca catcaatatg gtcggctttc cgactccccc taaaggtcta
     3721 acgctcgcgc gcaccgaagt agacggaatc gaacagcgag aagggatcga agtaaccgca
     3781 ggcgcgaaaa tcactggcgt gcgtcttgtc ttttcgtacg gcgccgggtc gattcgcggc
     3841 cagttaaaat cggaagacgg cgtgttaccc gcaggcctga cattgcaagt actcgttggt
     3901 ccgccgggtg gtggcccacg tcaattcagt gccggtgttg atgcgcgtgg tcattttgtc
     3961 gtgcaaaacg ttccacccgg cacttatgaa atgtccgtta tgacctttgg ccccaatcaa
     4021 accccttcga tgtatacacc cgagccgcga actgtgagcg tcgagagcgg cccggttcag
     4081 gtggtgctgg tcgtcaactt cgctaagaaa gcagcaccac aatgaagaca cttctcgcgc
     4141 ttgtcttgat cctgagtggc gttgtctccg cgctggccca gtcacagccg gcggctaagt
     4201 ccactgcctc gccgtcgcca acgacaattg agaaagctac cgaaaatccg cccgccactg
     4261 ggtccattaa aggccgtgta gtcgccgacg acggacggcc ggttgttaat gcagtgctta
     4321 tggcccaggc gattaacggc cagccttccg caagaccggc gcaagtagat tctgaaggga
     4381 agttcagttt cgatgaactg ccgtcagccg cctacgttgt ttttgccatg gctcccggct
     4441 acatcgacga agcaatgtcg accagcgacc cgaacgattg gccgcgacat ttgatcgggt
     4501 cacagttgag gatcaagatg atcaagggcg gagtgattac gggtaaggtc acaaatttga
     4561 aaggcgatcc gatcgtgggc gttccagtcc aggcaatgtc cttgaacaat cctgcttggt
     4621 ctcccacaga cttcctggga ggcggcggcg cggaaagcga tgaccgcggc gtctacagaa
     4681 tctacggtct gaggcctggt ccatacatag tcagtgcagg cggctcgggg cagtttggtt
     4741 tcgcaagatc gaacggcttc gatctcgatg tgccgaccta ctatcccgcg gccacacgcg
     4801 acacggctat tcccgttacc gtgcgaagcg gcgatgaaac ggcgggcatc gacattaagt
     4861 acattggcgg cgaaggccac cgcgtcagcg gcttcgtcat gggcggcatt gacggtggcc
     4921 cgtcggccgc gagtggcgcc atcgtgatct ttctgtcgca cgcgggaacg caatcagttc
     4981 ttttgatggc gatttccagc ccgttggacc agcgccgccc attcggcttc aacggcgtag
     5041 cagatggtga atacgatttg ttcgccacct tccaaacagg tcagcaggcc aatgcgtcac
     5101 tcgtagctac aaagcgcgtg accgttcgcg gcggcgatct gactggagtc gagctgaacc
     5161 tggtcccact tgcctcgatt gccggcgcca ttacacttca gccgatcaag ccggaggaca
     5221 agtgcgacga gcgtggctcg cagctcatcg aaaccgtttt cgcggcgcgc cgcgacgatc
     5281 cgcgaaagag cggcagtcaa ataatgacga gaatgctggc cggacttggc ggaagcttga
     5341 acgccaaagg cgagttcatc gcgcgtaatc tcgacgccgg cagatatcgg tttgacatca
     5401 aactgcctac cgatgcctgg t
//
LOCUS       DASWTX010000924         1827 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_184500, whole genome shotgun sequence.
ACCESSION   DASWTX010000924 DASWTX010000000
VERSION     DASWTX010000924.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1827
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184500"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1266)
                     /locus_tag="VGD38_13940"
     CDS             complement(<1..1266)
                     /locus_tag="VGD38_13940"
                     /inference="COORDINATES: protein motif:HMM:NF015094.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AarF/UbiB family protein"
                     /protein_id="HEY0729174.1"
                     /translation="MSQALVKRSEVNGNGHKPVAPKPTREVRPLTEEMVDELLAGRGV
                     RGWLRAARVARVLGLFSLYLFLDTYDVRADFNRRAVTRMRDAARERGRMARLKAWIWA
                     QLYAACDLFIRGLRYVIFRGAEGSARKQARLEKQAVWLRQSLIDLGPTFIKIGQALGT
                     RADLLPLEYVKELATLQDQVPAFPTDEAFARIEAELGRPLHEAFPEIDSEPIAAASLG
                     QVYRARLATGEEVAVKVQRPNLDATISIDIAILYRLVKLTNRFFPRANENADWEGMLR
                     EFHTTIHEEMDYVKEGRNADRFRYNVRTWRAIRVPKIYWSHTNTRVLTLEFVRGTKVV
                     DLEGLRANGISPVKVNRLLIRTYLKQLLEDGFFHADPHPGNLLVMDSGHLAFFDFGMV
                     GRISPQLQTQMIDAFFHVVARDVHGLGQDI"
     gene            complement(1273..>1827)
                     /locus_tag="VGD38_13945"
     CDS             complement(1273..>1827)
                     /locus_tag="VGD38_13945"
                     /inference="COORDINATES: protein motif:HMM:NF013821.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin kinase"
                     /protein_id="HEY0729175.1"
                     /translation="NIELLKRLGGELGFVAGEVPEVKFRGQRVSSSKIRELLARGQVN
                     LARRMLGRPYGVEGQVERGSERGHKLGFPTANLHPHNRVIPRNGVYVTGTLIEGHWRR
                     SVTNIGLRPTFGDASEPSVETFVLNWDGDLYGDVVRVRFLYRLRDERKFSSVDELTKQ
                     IKTDVARAESYFEHAGTKHMLEVV"
BASE COUNT          363 a          575 c          521 g          368 t
ORIGIN      
        1 gatgtcctgg cccagcccgt gtacgtcgcg cgcgaccacg tggaagaacg cgtcgatcat
       61 ctgcgtctgc aactgcgggc tgatccggcc aaccataccg aagtcgaaaa acgcgagatg
      121 gccgctgtcc atcacgagca agttgccggg atgcggatcg gcgtgaaaga aaccgtcttc
      181 aagcagttgc ttcaaatagg ttcgaatcag caggcgattg actttgacgg gcgagatacc
      241 gttggcgcgc aggccttcaa gatcgacgac cttcgtcccg cgcacaaatt cgagcgtcaa
      301 cacacgcgtg tttgtgtgtg accagtaaat cttcggcaca cggatcgcgc gccacgtgcg
      361 gacgttgtaa cgaaaacgat ccgcgttacg gccttccttc acgtagtcca tctcttcgtg
      421 gatggtcgtg tgaaactcgc gcagcattcc ttcccagtcg gcgttttcat ttgcgcgtgg
      481 gaagaaacgg ttcgtcagct taacgagccg gtacaggatc gcgatgtcga tactgatcgt
      541 ggcgtcgaga ttcggacgct gcactttgac ggcgacttct tcgccggtcg cgagtcgcgc
      601 acgatagacc tggccgagcg acgccgccgc gatcggttcg ctgtcgatct ccggaaaagc
      661 ctcgtgtaac ggacgcccga gttctgcttc gatgcgtgcg aaagcctcgt cggtcggaaa
      721 cgccgggact tgatcctgaa gtgtcgcgag ctccttgacg tattcgagcg gcagaagatc
      781 cgcgcgtgtg ccgagtgctt gtccgatctt gatgaacgtc gggccgagat cgattagcga
      841 ttgacgtagc cacaccgctt gtttctcgag ccgcgcctgt ttgcgcgccg agccttcagc
      901 gccacgaaag atcacgtagc gcagaccacg gatgaacaga tcgcaggcgg cgtagagctg
      961 tgcccagatc caggctttca gccgcgccat gcggccacgt tcgcgagcgg catctcgcat
     1021 ccgcgtaacc gcgcggcgat tgaaatccgc gcgcacgtcg taggtgtcga gaaacaggta
     1081 aagcgagaac agtcccagca cgcgcgcgac acgcgccgcg cgcaaccagc cgcgcacgcc
     1141 acggccggcg agcagttcgt cgaccatttc ttcggtcagc gggcgaacct cgcgtgttgg
     1201 tttcggcgcg accggcttgt ggccgttgcc gttaacttcg gaccttttaa ccagtgcttg
     1261 actcatctaa acctaaacaa cctctaacat gtgcttcgtg cccgcgtgct cgaagtaact
     1321 ctcggcgcgc gccacgtccg tcttaatctg cttcgtcaat tcgtctactg aactaaactt
     1381 ccgctcgtcg cgcaaccgat acaaaaacct gacgcgcacg acatcgccgt aaaggtcacc
     1441 gtcccagttc agtacgaagg tctcaaccga aggttccgac gcatccccaa acgtcggccg
     1501 cagcccgatg tttgttacgc tgcgccgcca atgtccctcg atcaaagtgc cggtgacgta
     1561 cacgccgttc cggggtatga cgcggttgtg agggtgcagg ttcgctgtcg gaaaacccaa
     1621 tttatggccg cgttccgagc cgcgttcgac ctgtccttcg acgccgtacg gccgtcccaa
     1681 catgcgcctc gcgaggttca cctgcccgcg cgccaacagc tcgcgaatct tgctcgaact
     1741 cacgcgctgg ccacggaatt taacttccgg gacctcgccc gcgacaaaac ccagttcgcc
     1801 gccaagacgc ttcagcagct cgatgtt
//
LOCUS       DASWTX010000925         3259 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_121224, whole genome shotgun sequence.
ACCESSION   DASWTX010000925 DASWTX010000000
VERSION     DASWTX010000925.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3259)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3259)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3259
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121224"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1453
                     /locus_tag="VGD38_13950"
     CDS             <1..1453
                     /locus_tag="VGD38_13950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729176.1"
                     /translation="VWDKTLAELQAAGLMGQALTGFHQALLRRDVTLPRITPDPARPW
                     IENANLKTLDNEVVKLLDPPDPKVPTGERLAPATPPPPSTAPPSFSFLMIRAGALRID
                     ELWLVDDFGQTADLLGLTPARSKSTGQIFHPRMRWDNDQSVMAMPPRVLQPTRLNFRF
                     VAADNVQDDSDPALRSICGWLFFNPLDQTLVLCDRSGNLAGELVITKQQNNYAINWEP
                     GAGGVPLEKIPNETLKSFAKSLIETHEKPKLLDLLTLIDRSLERIRPAAARNNSILAS
                     RPLALVSATIGLELFGKAWADPHKPVGEAKAQGTGDAKLDALRIRVSLGSAQNVEDGL
                     VGYFKNGDYTRIVPGELPKDTAPTSYIVDPVSNALRAGFGPPEKITLLMDPWGSVQAA
                     CGLVPAKSITLAHPALDETVAQMETSFRVGPVLLQAGKIALPTPTRDKGTWNFSGPFT
                     NQTATTVAALDLKTFNDQPVVATEGRLLLLNEE"
     gene            1467..>3259
                     /locus_tag="VGD38_13955"
     CDS             1467..>3259
                     /locus_tag="VGD38_13955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729177.1"
                     /translation="MPDPKLLEFSVQTYAADKLEIKVKNISAKVLEETLAIELYIPTY
                     LVDSRINAAAKAAASSTKPVGVASLAGVVTGPTQWSLWARRETSDSSVVILLLNDLTQ
                     TGTELATPVKVAAGAEFIISIPLNPQANHAAVNVLYSYLHGTDEDDQRGDGKLELKPG
                     DTSDSLPNVSLTTNATNPTAVPAAKLVKIFWKVENGVSATLRGPLPGGNTELSLSSDP
                     TADFKIAEGFLEVRVVSGMTFILQAEVKRQGKPNVQVVRMLSLDTSNNKYTYLAPRPI
                     RVLPYGLIEIDWAAWGVKQVEISVGGHTTRTIALTQQTLGRFYEGSGVMRVSATKEIG
                     GVKTLNEGMTLEAPPETAKTASVQVVSWIRMKKPEAQGSPIGLAVIAPRIALLTDQGL
                     HIAPVGDIDKTPPLEKLAFTAKPNPSGMFMWQALTAVDQRFVCARMVFANNTPDIEIM
                     PFASDGNPDQIPPVTLPAEIRPVASAQGAVFDLVGFGGRAYYAAESPKVGGITRLAYS
                     VGFDSSTKKANVRSEPLLQSMIGFRLVCFDDALYALNRETGQMFRFELTTTGKLDQPK
                     KAASAVKPGAGSMVKDGLFVPVGRLLVVMNPT"
BASE COUNT          744 a         1014 c          905 g          596 t
ORIGIN      
        1 cgtgtgggac aaaacactcg ccgagcttca agccgcgggt ttgatgggcc aagcactaac
       61 cggatttcac caggcactat tgcgtcgaga cgtcacgctg ccgcgcatca cgcccgatcc
      121 cgcgcgtcca tggatcgaaa acgcaaacct gaagacgctc gacaacgagg tcgtcaaact
      181 actcgatccg cccgacccga aagtgccaac cggcgaacgt ctcgcaccgg caacaccacc
      241 gccgccatca accgcgccac caagcttttc gttcttgatg atccgcgcgg gcgctctgcg
      301 catcgacgaa ctgtggctcg tcgacgactt cggccagacc gccgacttgc tcggcttaac
      361 acccgcgcgc agcaaatcca cgggccaaat cttccacccg cgcatgcgct gggacaacga
      421 tcaatcggtg atggcgatgc cgccgcgcgt cttgcaacca acgcgtctga actttcgctt
      481 cgtcgcagcc gacaacgttc aagacgactc cgatccggcg ttgcgctcga tctgcggttg
      541 gctctttttc aatccgctcg accagacgct cgtgctttgc gatcgcagcg gcaatctcgc
      601 cggcgagctc gtcatcacga aacaacagaa caattacgcc atcaactggg aacctggcgc
      661 cggtggtgtt ccactcgaaa agattcccaa cgagactctg aagtcgttcg ctaaatcgct
      721 gatcgaaacc cacgagaaac cgaagctgct cgacttgctg accctgatcg atcgttcact
      781 cgaacgcatt cgtcccgccg ccgcgcgcaa caactcgatt ctcgccagcc gcccgctcgc
      841 gctcgtgagc gccacgatcg gtttggagtt gttcgggaaa gcatgggccg acccgcacaa
      901 gccggttggt gaggcaaaag cacagggcac gggcgacgcg aaactcgatg cattgcgcat
      961 ccgcgtcagt ctcggctcgg cgcaaaacgt cgaagacggg ctcgtcggtt atttcaaaaa
     1021 cggcgactac acccgcatcg tccccggcga actaccgaag gacactgcgc ccacaagcta
     1081 catcgtcgat ccggtgagca acgccttgcg cgccggtttt ggtccacccg aaaagataac
     1141 actcctgatg gatccgtggg gttcggtgca agctgcctgc gggctcgttc ccgcgaagtc
     1201 gatcacgctc gcgcatcctg cgttggacga aactgtcgcg caaatggaaa cgtcgttccg
     1261 cgttggacca gtcttgctgc aagccggaaa gatcgcgctc ccaacaccca cccgcgacaa
     1321 aggaacatgg aacttcagcg ggccttttac caatcaaacc gccacgactg tcgccgctct
     1381 cgatctcaag actttcaacg atcagccagt cgtcgcgact gaaggccgct tgctgctgct
     1441 aaacgaagaa taaaagagga aacacgatgc cagacccaaa attgctcgag tttagtgtcc
     1501 aaacttatgc cgccgataag ctggagatca aagtcaaaaa catcagcgcc aaagtcctcg
     1561 aggagacgct ggctatcgag ctttacattc caacgtacct ggtggacagc aggatcaacg
     1621 ctgcggcaaa agccgcggcc agcagcacca aaccggtcgg cgtcgcgagc ctcgccggtg
     1681 ttgtgactgg tccaactcaa tggtcgctgt gggccagacg cgaaacgtct gactccagcg
     1741 tcgtgatcct cctcttaaac gatctcacac aaaccggaac cgagttggcg acgccggtca
     1801 aagtggccgc cggcgctgaa ttcatcatca gcattccgct caacccgcaa gccaaccacg
     1861 cggcagtcaa cgttctttac agctatctgc acggcactga cgaagacgat cagcgcggcg
     1921 acggcaaact cgaactcaaa cccggcgaca cgagcgattc gctgccgaac gtatcgctaa
     1981 ccaccaacgc cacaaatccg acagcggtcc cggctgcgaa gctcgtaaag atcttctgga
     2041 aggtcgaaaa cggcgtgagc gccacgctgc gtggtccatt gccgggcggc aacaccgagt
     2101 tgtcgctcag ttcggatcca accgctgact tcaagatcgc agaaggtttt ctcgaggtgc
     2161 gcgtggtcag tgggatgact ttcatcctgc aggcggaagt gaaacggcag ggcaagccga
     2221 acgtccaggt cgtgcgcatg ctctcgctcg acaccagcaa caacaagtac acgtacctcg
     2281 cgccgcgccc gatcagggtg ctgccgtacg gactgatcga aatcgattgg gccgcgtggg
     2341 gcgtgaagca ggttgaaata tccgtcggcg ggcacacgac gcgcacgatc gctctgacgc
     2401 aacagactct cggccgcttc tatgaaggca gcggcgtcat gcgcgttagc gcgacgaagg
     2461 agatcggcgg agtcaagacc ctcaacgagg gaatgacgct cgaggctccg ccggaaacag
     2521 ccaaaacagc gagtgtccag gtggtctcgt ggatacgaat gaaaaaaccc gaggcccagg
     2581 gctcgccaat cgggttggcc gtgatcgcgc caagaatcgc gttgctgacc gatcagggct
     2641 tacatatcgc ccccgtcggc gatatcgata agacgccgcc gttggagaaa ctcgccttca
     2701 ctgcaaaacc gaatccgtcc ggaatgttca tgtggcaggc actcacggcg gtggaccaga
     2761 gatttgtttg cgcgcggatg gtcttcgcga acaacactcc cgacatagag ataatgccgt
     2821 ttgcctcgga cggtaatcct gaccagattc ctccagtaac tctgcctgcc gaaattcgtc
     2881 ccgtggcatc cgctcagggc gctgtctttg atctcgtagg gtttggcggg cgcgcttatt
     2941 acgcggcgga gagtcctaaa gtcgggggaa taacccggct ggcttactca gtcgggttcg
     3001 acagcagcac taagaaagcc aacgtccgct ctgagccgct tctccaatcc atgattggtt
     3061 tccggttggt ctgtttcgac gatgcgcttt acgcgctgaa ccgtgaaacc gggcagatgt
     3121 ttcgtttcga actcacaacc acaggcaagt tggaccaacc aaagaaagcc gcgagcgcgg
     3181 tcaagcctgg cgcaggatcg atggtgaaag acggattgtt cgtgcccgtt ggacggttgc
     3241 tggtagtgat gaatccgac
//
LOCUS       DASWTX010000926         1806 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_102378, whole genome shotgun sequence.
ACCESSION   DASWTX010000926 DASWTX010000000
VERSION     DASWTX010000926.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1806
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102378"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..260
                     /locus_tag="VGD38_13960"
     CDS             <1..260
                     /locus_tag="VGD38_13960"
                     /inference="COORDINATES: protein motif:HMM:NF014171.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TrkA C-terminal domain-containing protein"
                     /protein_id="HEY0729178.1"
                     /translation="QIEAAQALNADLVSFYVTSAVAAAGVSLADLPFPEGAAVSMIVR
                     GQDLIPPKGSTILEPGDHVYVITRSEDLNEIQLLFGKPEAD"
     gene            complement(503..1156)
                     /locus_tag="VGD38_13965"
     CDS             complement(503..1156)
                     /locus_tag="VGD38_13965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729179.1"
                     /translation="MRSTTLYAGAFAALAFASVGEAQTPRSSSISVNRGAFAVAPYAG
                     YLVSQNFFEGPLNTSLGVQGASVYGAQFSMALAPGASLVGAMGYGSGDLEAGIPIFGG
                     ISVGQTSTLLLDASVELRLENSTKRFIPVFQLGGGAIRREVTIAGMNRDAFDFQVSGA
                     IGADLPLARNIAVRLMAKDYVGKADFGTINLGSLGTLEASTKDLHTVALTGGLRIEF"
     gene            1390..>1806
                     /locus_tag="VGD38_13970"
     CDS             1390..>1806
                     /locus_tag="VGD38_13970"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEY0729180.1"
                     /translation="MRFANLLVISAVFAAACADAGGETENAQATSSQQCKPLESRSPN
                     ARGQKPAFQGQTRACGVKSNVAFDVVVVARGLVNPWAVEPLPGGDLLVTEKPGRMRIV
                     SVAGALGAPLSGLPPIDAGGQGGLLDVAISPNFASDR"
BASE COUNT          381 a          529 c          517 g          379 t
ORIGIN      
        1 tgcagatcga ggcggcccag gcactgaatg ccgacctggt ttccttctac gtcaccagcg
       61 cggtcgcggc cgcaggtgtc agcctggccg atttgccttt tcccgagggc gcggccgttt
      121 ccatgatcgt gcgtgggcag gatctgattc cgcccaaagg ctctaccata ctcgaaccgg
      181 gtgatcacgt ttatgtcatc acccggtcag aagatctgaa tgaaattcag ctgctttttg
      241 gtaagccgga ggccgactga gctgacggcc ggactaaaag cggaactcaa cttcggttac
      301 ggcgggactc aacttcggaa ctcaaaagcg ggactcaaaa tcggaacgac ggttatcatc
      361 aactcgtgcg tggcgagtga gtcgcgtatc acgtggactg gaaaccgaag ttccgatgtt
      421 gagtcccgct tttgagttcc gaaattgagt cccggttttg agtcccgccg ttaccgaagt
      481 tgagtcccgc cgttgaaatc gttcagaact cgatacgcaa tccgcccgtg agcgcgaccg
      541 tatgcaggtc cttcgtgctc gcttcgagcg tgcctaagct acccagattt atcgtcccga
      601 aatcagcctt gccgacatag tctttcgcca tcaaacgcac ggcgatgttg cgcgccagcg
      661 gcaggtcagc gccgattgcg ccagacactt gaaagtcaaa cgcgtctctg ttcatccccg
      721 caatcgtgac ttcgcgacga atcgcgccac cacccaattg aaataccggg atgaatcgct
      781 tggttgagtt ctccagccgc agctcaactg atgcatccag caacaatgtg ctggtctgac
      841 caactgagat gccgccgaaa atcgggatgc ccgcttcgag gtcgccgctg ccgtatccca
      901 tcgcaccgac gagcgaagcg cctggcgcca acgccatgct gaactgcgcg ccatacaccg
      961 aggcaccctg aactcccagg ctggtattca acggtccttc gaaaaagttc tgactgacca
     1021 gatagcccgc atacggtgcg acagcgaacg cgccgcggtt gacactgatc gacgatgaac
     1081 gtggtgtctg agcttcgccc acgcttgcga aggcgagcgc agcgaatgca cccgcataca
     1141 gtgttgtaga acgcatcttc gcgtctccgt tggaagaaag tgcggagaca cgtgtgcgca
     1201 ttagatgcgc cgatgcgtag tttcgagtta agttgttgtt tggtaacgct tagagctttt
     1261 ttgatggccg cggtggtaaa cgcgcgtgtc acaagccgcg gacaaagccc tgtctttaat
     1321 ggatgtcagc tttctttccg cggcgagcag aattaagctc agtgccaata cattcgcaat
     1381 cgaggtctca tgcgcttcgc caatcttctc gtaatctccg cggttttcgc cgccgcgtgc
     1441 gccgatgcag gaggcgaaac cgagaacgcc caggcaacaa gttcgcagca gtgcaaacca
     1501 ctcgaatcgc gttccccgaa tgcacgcgga cagaaaccag cgtttcaggg acagacgcgc
     1561 gcgtgcggcg tgaaatcgaa cgtcgcgttt gatgttgtgg tcgtcgcgcg cggattggtg
     1621 aatccgtggg cggtcgaacc gctgcccggc ggcgatttgc tggtcaccga gaaaccggga
     1681 cggatgcgca tcgtttccgt tgctggagca ctgggcgcac ccctcagcgg cctaccacca
     1741 attgatgcag gcgggcaagg tggtttgctc gacgtcgcaa tcagcccgaa cttcgcgagc
     1801 gatcgc
//
LOCUS       DASWTX010000927         6640 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_343279, whole genome shotgun sequence.
ACCESSION   DASWTX010000927 DASWTX010000000
VERSION     DASWTX010000927.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6640
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343279"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1003)
                     /locus_tag="VGD38_13975"
     CDS             complement(<1..1003)
                     /locus_tag="VGD38_13975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEY0729181.1"
                     /translation="MSFPLLSGLRSNDLAIDLGTANTLVYAKGRGVVLSEPSIVAINK
                     VTNNVEAVGKEAKEMLGRTPGNIVAIRPMRDGVIANFEVTEKMLQHFIRKAHNGRTWV
                     SPRVIIGIPSEITQVERRAVEDSAYRAKASEVYLVEEAVAAAIGAGLPITEPQGNIVV
                     DIGGGTTDIAVISLGGIVYARAVRTAGDAMDNAVAEWVKRKYNLLIGERTAEEIKIQL
                     GSAFPLDEPLSMEVRGRNLVEGIPQTITVTDDEIRQALDPSVSAIVDAVRVALERTPP
                     ELSADIIDRGVVLTGGGALLANLDKRLRTETGLPVFVADDPLTSVVLGAGKMLSDFAL
                     "
     gene            1486..3819
                     /locus_tag="VGD38_13980"
     CDS             1486..3819
                     /locus_tag="VGD38_13980"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0729182.1"
                     /translation="MIGTLLFVVIVVCSWTSYRSVAASAQAVGRERLQNLTQQLSGML
                     QQTVYTLTTKTATVANEPAVRTFLASPATASRDDVQKVLQQFVAPADANSLGVELWSR
                     QSGLVFSAPDSGTIALGDLATEFQQSASEPFKAVGAIRRVKNTVGFPTVAAVKGDDGK
                     IVGYLVRWRRLATTPDSRQQMNKLLGSNATLYLGNSANDTWTDLEKVVAKPSVDLSQL
                     VDVASYERSDSGKVIGLARPINGTPWSVLIEFSEDVIQRPASSFLKRTSMIGLFIFLL
                     GVGVAFVLSRNITKPLNELTETATAISQGDDSRVVQVRQKDELGQLASAFNAMVVKVR
                     DSQQELERKVQQRTLQLEEANRQLESLSETNVLKRALAEKEKTDALEALANTERQLIQ
                     SQKLEAVGRLAGGISHDFNNLLTVILGYSDIMLRQLSQEHPLRRYLDEIVKASERASA
                     LTRQLLAFSRKQVMQPKVFGVNNVVSELEKMLRRMIGEDIELRVSLHPDLGNIKADPV
                     QLEQVIMNLVVNARDAMPKGGKLTIETSNVYLDQTYAKEHMSVEPGNYVMLAISDTGC
                     GMDKETRQRIFEPFFTTKAQGKGTGLGLSTVYGIVKQSGGNIWVYSEEGRGTTFKIYF
                     PQVREEAEEYRRVTAKAEAPRGSETILLVEDADWVRKLARQLLERAGYRVVEASGAEE
                     AIRIIETSTNGTKIDLVLTDVIMPGMSGNDMSKHLLAQRPDLPVLYMSGYTDDAIVQH
                     GVLEPGINFIQKPFSPDALALKVREVLDAKPQPHHHR"
     gene            complement(3746..5413)
                     /locus_tag="VGD38_13985"
     CDS             complement(3746..5413)
                     /locus_tag="VGD38_13985"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY0729183.1"
                     /translation="MSNSRPVMLVGFQNQGNLGLGYLAAVLRRSGYAVQVVDIEQDPV
                     EIVRMAREINPILIGFSLIFQFFIDRYAALLYLLRSNGLDCHFTMGGHFPSLSYEQTL
                     ELVPELDSVVRFEGEATLLEMVDAIEAGKDWREIHGLAYRDDEGRVTVTRPRALLEDL
                     DQLPYPDREYEPEAVIGRSIMPILASRGCARTCSFCSIHTFYRAAPGRIVRTRKPAEV
                     VREMEMLHEEHGTTIFLFQDDDFPLFGQVWRRWANEFVDELERTGLSRKVIWKMNCRA
                     DAVDRDLFIRMRDAGLYLVYMGLESGSEQGLETLHKQINVEQNLKAVETLKSIGLMFE
                     YGFMLLDPSSTFESIRENIQFLRTILADGCLPVTFCRMLPYDGTPIKDELVRTGRLRG
                     DICNPDYDFLDPRIGEFYEALTGLVSLTGWIHGLKAVTTQLGWAWHEVATMERLFPAL
                     PGFEEYKETLRGITKRSNDLLLQVVEDLAYQFSDDKPALWTPEVVEEARERFLDELLH
                     ERNSFVYANQDILIETLESGGLTIIDDDEVEASHPAPRAPSTQAHPG"
     gene            complement(5439..5630)
                     /locus_tag="VGD38_13990"
     CDS             complement(5439..5630)
                     /locus_tag="VGD38_13990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729184.1"
                     /translation="MVTKKAATKVATKVSVLKFNPEWFSDPPPPFFKNLDRAAQRELA
                     AAKKEFTARVKEILAKGQR"
     gene            complement(5745..>6640)
                     /locus_tag="VGD38_13995"
     CDS             complement(5745..>6640)
                     /locus_tag="VGD38_13995"
                     /inference="COORDINATES: protein motif:HMM:NF012889.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:2001070 - starch binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="carbohydrate-binding module family 20
                     domain-containing protein"
                     /protein_id="HEY0729185.1"
                     /translation="LNTLSTLRRNNTAIPYGSISQRWINNDVYIYERKFFGNVVLVAI
                     NKNETTSYNLSGLNTSLPSGNYSDYLTGLLGGFGITVNSGSGGNNPVTNFTLPAHTVA
                     VWQFTESGGTPQVGSIGPTAGQPGVKVTIAGKNFGSTTGTVKFGTTTATVNSWTSTKI
                     VATTPSVTNGNYNVTVTNSSSQVSNAIQYTVLTAKLIPITVTVNNATPTRVGDYIFLT
                     GNTVELGNWSTTWDGAVGPLLTPNYPNWFNVVSVPAGQTIQFKFIKIAANGAVTWEAG
                     ANHQYTVPTSGTGFVNVNWQY"
BASE COUNT         1455 a         1904 c         1912 g         1369 t
ORIGIN      
        1 gcagggcaaa gtctgaaagc attttacccg caccaagcac taccgacgtc agcggatcgt
       61 ccgcgacaaa caccggcagt ccggtttcag ttctcaaacg cttatccagg ttcgcgagca
      121 acgcaccgcc accggtcaaa accacgccgc ggtcgatgat gtctgctgaa agttccggcg
      181 gcgtgcgctc aagcgctacg cgcaccgcat cgacgatcgc gctcaccgaa ggatcgagcg
      241 cctggcgaat ctcatcatcc gtcacggtaa tcgtctgcgg aataccctca actagattac
      301 gtccgcgcac ttccatgctc aacggctcat ccagcgggaa cgcactgcca agctgaatct
      361 tgatctcttc cgcggttcgc tcgccaatca acagattgta tttgcgcttc acccactccg
      421 cgaccgcgtt gtccatcgcg tcgccggccg tgcgcaccgc acgcgcgtaa acaattccac
      481 ccaaactaat gacggcgatg tcggtcgtgc cgccgccgat gtcgacgacg atgttgccct
      541 gcggttcggt aatcggcagt ccggcgccga ttgccgcggc aacggcttcc tcgacgaggt
      601 aaacctccga cgctttggcg cgataagcgg agtcttcaac cgcacgccgt tcgacctgcg
      661 taatctcgga aggtatgccg atgatcacgc gcggactgac ccacgtgcgg ccgttgtgcg
      721 ccttgcggat gaagtgctgc agcatctttt cggtcacttc gaaattagcg ataacgccgt
      781 cccgcattgg ccgaatcgcg acgatatttc ccggcgtgcg gccaagcatc tcctttgctt
      841 ccttcccgac agcttccacg ttgttagtga ccttgttgat ggccacgatg gacggttcgc
      901 tgagcacaac gccgcgccct ttggcgtaaa cgagcgtgtt tgccgtgccg agatcgatgg
      961 ccaggtcgtt cgaacgcagg ccggaaagaa gagggaagga catcagtaca cctcagattc
     1021 tgtaagttgt cgtcgggctc gatgcttctg tattcagaag aaccaggaag gaaagcgaag
     1081 tgaaaaccgc ctctaccgcg tcgctgttag gaaattaaca gggactaaca ctatttaatt
     1141 tattgagatc agagtgtcaa gaagtatttt agggaacttt gacctattga ccgcggaacg
     1201 gagtggtcct attctttggg cgtacaagca ggctcccccc agcactctcc caagttgtaa
     1261 cgatcccgac aacctcccac cgcgacctcc ccaaaaacct cccacgaatt gctgcccagg
     1321 cggttttttc gtgcgggcta gttggttttt gacgattgtt cgcctggcga acaaggaagg
     1381 tggaggtgtc cgatgccaca aatcacaccg aagtctcaac agacatgggg atcccgcaaa
     1441 aaattttcac tttcaaacat ttcgattaag tatcgcctgc cacttttgat cggcacgcta
     1501 ctgtttgtcg tcatcgtggt gtgcagttgg acgtcgtacc ggtcggtcgc agcgtcggcg
     1561 caggctgtcg ggcgcgagcg tctgcaaaac ctgactcagc aactctcagg catgttacag
     1621 cagacggttt acacgctcac cacgaagacg gcgacggttg cgaatgagcc ggcggttcga
     1681 acctttctcg cttcacccgc aacggcttcg cgcgacgacg tgcagaaggt gctgcaacag
     1741 tttgtcgcgc ccgcggatgc aaacagtctc ggcgtcgagc tctggagcag gcaaagcgga
     1801 ctggtcttct cggccccgga cagcggcaca atcgcgctgg gcgatctggc cactgagttt
     1861 cagcaaagcg cttcggagcc gttcaaagca gtcggtgcga ttcgacgcgt gaaaaacacc
     1921 gtcggctttc ccacggtcgc agcggtcaag ggcgacgacg gcaagatcgt cggctatctc
     1981 gtcagatggc gccggctcgc aaccacgccc gacagccgcc agcaaatgaa caaactgctc
     2041 ggcagcaacg ccacgctcta tctcggcaat agcgccaacg acacctggac cgatctcgag
     2101 aaggtcgttg caaagccttc cgtagatctc tcgcagcttg ttgacgtcgc gtcatacgag
     2161 cgcagcgaca gcggcaaagt catcgggctc gcgcgtccga tcaacggcac gccgtggtcg
     2221 gtcctgatcg agttctccga ggacgtcatt caaagaccgg cgagcagttt tctgaaacgc
     2281 acgtccatga tcggtttgtt tatcttccta ctcggcgtcg gcgtggcatt tgtgctcagc
     2341 cggaatatca ccaagccgct gaacgaactc acagaaaccg cgacggccat cagccagggc
     2401 gacgattcgc gcgtcgttca agtgcgccag aaggatgaac tcggccagct cgcgagcgcc
     2461 ttcaacgcga tggtcgtcaa agtccgcgac tcgcaacagg aactcgaacg caaagtccaa
     2521 cagcgcacgc tgcaactcga agaagcaaac cggcaattag agagtctttc tgagacaaac
     2581 gtgctcaagc gcgcgctcgc ggaaaaagag aagactgacg cgctcgaagc actcgcaaac
     2641 actgagcggc aattgatcca gtcgcagaaa ctcgaagccg tcggacgcct ggcgggtggc
     2701 atctcacacg acttcaacaa cctgctcacc gtgattctcg gttacagcga catcatgttg
     2761 cggcaactga gtcaggaaca tccgctgcgc cgctacctgg acgaaatcgt gaaggccagc
     2821 gaacgtgcgt ccgcgttgac gcgacagcta ctcgccttca gccgcaaaca ggtcatgcag
     2881 ccaaaggttt tcggcgtcaa taacgtcgtc agcgaactgg aaaagatgct gcggcgaatg
     2941 atcggcgaag acatcgagct tcgcgtcagc ctgcatccgg atctcggaaa catcaaagcc
     3001 gatccggtgc agctcgaaca ggtgatcatg aacctggtcg tgaatgcgcg cgacgcgatg
     3061 ccgaaaggcg ggaagctgac gatcgaaacc agcaacgtct atctcgacca gacgtacgcg
     3121 aaggagcaca tgtcggttga acccggaaac tacgtgatgc tcgcgatcag cgacactggc
     3181 tgcggcatgg acaaggaaac acgccaacgc atttttgagc cgttctttac gaccaaagcg
     3241 cagggcaagg gaaccggcct cggtctctcg acggtctacg gcatcgtgaa gcagtccggc
     3301 ggaaacatct gggtctacag cgaagaaggc cgtggaacga cattcaagat ctacttcccg
     3361 caggtcaggg aagaagcgga agagtatcga cgcgtgaccg cgaaggccga ggcgccgcgc
     3421 ggttcggaaa cgatcctgct ggttgaagat gcagactggg tacgaaagct tgcgcggcag
     3481 ctcttggaac gcgccggtta tcgcgtggta gaggcgagcg gcgcggaaga agcaattcgg
     3541 atcatcgaaa cgagtaccaa cggaacgaag atcgatctgg tgttgacgga cgtgatcatg
     3601 ccgggcatga gcggcaacga catgtcgaag cacttgctgg cccaacgtcc ggatctgccg
     3661 gtgctttaca tgtcgggcta cacagacgac gcgatcgtgc agcacggcgt gctggagccc
     3721 ggcatcaatt ttattcagaa gcctttcagc ccggatgcgc ttgcgttgaa ggtgcgcgag
     3781 gtgctggatg cgaagcctca acctcatcat catcgatgat ggtgagtccg ccgctttcca
     3841 gcgtttcgat caggatgtcc tggttggcgt aaacaaagct gtttcgttcg tgtagcagtt
     3901 cgtcaagaaa gcgctcccgc gcctcctcaa cgacttccgg cgtccacaac gccggcttgt
     3961 cgtcggaaaa ctggtaagcg agatcttcga cgacttgcag gagcagatcg ttgctgcgtt
     4021 tcgtgatgcc gcgcagcgtt tccttgtact cttcaaatcc cggcagcgcg ggaaacagcc
     4081 gttccatcgt ggcgacttca tgccacgccc agcccaactg cgtcgtcacc gctttcagac
     4141 cgtgaatcca accggtcaga ctcacgagac ccgtcagcgc ttcgtaaaac tcgccgatac
     4201 gtggatctag aaagtcgtaa tcgggattgc agatgtcgcc acgcaaacgt cccgttcgca
     4261 cgagctcgtc tttgattggc gtgccgtcgt aaggcagcat ccggcagaac gtcaccggca
     4321 aacagccgtc ggcaaggatc gtgcggagga actggatgtt ttcacgaatc gactcaaacg
     4381 tgctcgaagg atcgagcagc atgaagccgt attcaaacat caacccgatg ctcttcagcg
     4441 tctcgacggc tttcaggttt tgttcgacgt tgatctgctt gtgcagcgtt tcgagtccct
     4501 gctcgctgcc ggattcgaga cccatataga cgagatacaa tccagcgtcg cgcatcctga
     4561 tgaacagatc gcgatcgaca gcgtcggcgc ggcagttcat cttccagatc accttgcgcg
     4621 acaagccggt gcgctcgagc tcgtcgacaa actcgttggc ccagcgacgc cacacctgac
     4681 cgaacaacgg gaagtcgtcg tcctgaaaaa gaaagattgt cgtgccgtgc tcttcgtgca
     4741 gcatctccat ttcacgcacg acctccgccg gcttgcgcgt gcggacgatg cgtccgggcg
     4801 cggcgcggta gaaagtgtga atggaacaga acgaacacgt gcgcgcacag ccgcggctcg
     4861 cgagtatcgg catgatgctt cgtccgatca cggcttccgg ttcgtattcg cgatcgggat
     4921 aaggcagttg atcgagatct tcgagcagcg cgcggggacg cgtgacagtc acacggcctt
     4981 cgtcgtcgcg atacgcgagt ccatgaattt cgcgccagtc tttgccggct tcgatcgcgt
     5041 cgaccatctc cagcagcgtg gcctcccctt caaagcgcac gacactatcg agctccggta
     5101 cgagctcgag agtttgttcg tagctcagac tgggaaagtg accgcccatt gtgaaatggc
     5161 agtcgaggcc attgctgcgc aggagataga gaagtgccgc gtagcggtcg ataaagaact
     5221 ggaaaatcag cgaaaaccca ataagaatcg ggttgatctc gcgcgccatg cgcacgatct
     5281 cgaccgggtc ctgttcgatg tcgactacct gcacggcata accggaccgc cgcagcacag
     5341 ccgcgaggta gcccagaccc aggttgccct ggttctggaa accgaccagc atcacaggtc
     5401 gtgaattgct catgacacga attggaccaa ccgcgagttt atctttgacc cttggcgaga
     5461 atttctttca cgcgtgcggt gaattctttc ttcgccgcag ctagttcgcg ctgggccgcg
     5521 cggtcgagat tcttgaagaa cggcggtggc ggatctgaaa accactcggg attgaatttg
     5581 agaacggaaa ctttggttgc gacttttgta gcagcctttt tagtaaccat ttggtgagct
     5641 cctaaggaga cgaagaacta acggtccaac gtcgggggaa tcgcggttgg ttaaaacgag
     5701 cgggacaata gtttagttgt cccgcgcttg tcaacgtttt ttaattagta ctgccagttc
     5761 acatttacga acccggttcc gcttgttgga actgtgtact gatgattcgc gccggcttcc
     5821 cacgtgaccg cgccgttcgc ggcgatcttg atgaacttga actggatcgt ttgacccgcc
     5881 ggaacactca cgacgttgaa ccagttcgga tagttcggcg tcagcagtgg accaacagcg
     5941 ccgtcccacg tcgtggacca gttgccgagc tcgaccgtgt tgccggtgag aaagatgtag
     6001 tcgccgacgc gtgtcggggt tgcattgttg acggtgacgg tgatcggaat cagcttcgcc
     6061 gtgagcaccg tgtattgaat cgcgttggaa acctggctgc tggaattcgt caccgtgacg
     6121 ttgtagttgc cgtttgtgac tgaaggcgtg gtcgcgacga tcttcgtcga ggtccacgaa
     6181 ttgacggtgg ccgtggtcgt gccgaacttc acggtgccgg tagtgctgcc gaagttcttg
     6241 ccggcgatcg tgacttttac tccgggttgt ccggcggtcg gcccaatcga gccaacctgc
     6301 ggagtgccgc cgctttccgt aaactgccag accgccaccg tgtgcgcggg caatgtgaaa
     6361 ttcgtgaccg gattgttgcc gccagagccc gagttaacgg taattccaaa gcctcccagc
     6421 aaacctgtca aataatcgga gtagttgccg gagggcagag acgtgttcag accgctgagg
     6481 ttgtagctcg tggtttcgtt cttgttgatg gcgacgagca cgacgttgcc gaaaaacttt
     6541 cgttcgtaga tgtagacgtc gttattgatc cagcgctggc tgatcgagcc gtaggggatc
     6601 gcggtgttgt tgcgtcgcag ggtcgagagt gtgttgagga
//
LOCUS       DASWTX010000928         2373 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_35496, whole genome shotgun sequence.
ACCESSION   DASWTX010000928 DASWTX010000000
VERSION     DASWTX010000928.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2373)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2373)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2373
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35496"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2359)
                     /locus_tag="VGD38_14000"
     CDS             complement(<1..2359)
                     /locus_tag="VGD38_14000"
                     /inference="COORDINATES: protein motif:HMM:TIGR01733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEY0729186.1"
                     /translation="MIGVFVNTLLIRTRLAGDATLRTVLDHVREVVLEAQTHQDLPFE
                     KLVEELHPERNLSHGPLFEVMFIFNNKPRTLMEVQDVTISLIESSSGTEKFGLTLEIA
                     EAQGLNCSLSYRTDLFDRTTIDRFAKHWQRLLEALAADPGQRLSNVPLLDEAEQAQIL
                     THWNDTAASWTEPSFLNLFQQQVERTPDAPAVQFNDQQLSYHELNARANQLAHYLRSF
                     GAGPDTRVGICLGPSLEMVVAVLASLKAGAAYVPLDPAYPAERLSLMLANARCLVLLT
                     NETNASSLPETDVRVLYLDRDWEQIAGSSRTNPRVQIDPENLVNVIYTSGSTGVPKGV
                     AMTHRALGNLVCWQTRYFPAPARTLQFASLSFDVSFQEIFTTWCSGGTLLLVTNEQRH
                     DVNRMLSYLSMEQVERVDLPFVYLQHLAEACEQGGPLPVSLRDVVAAGEQLECTPQIR
                     QLCERLNSGLYNHYGPSETHVVTQHELTGDSAGWPTLAPIGRPIANSRIYILESRLQP
                     APIGVAGELFIGGENLSRGYLDRPDLTAERYVPNPFDGGSDRLYRTGDLARYLPDGTI
                     EFLGRIDTQVKIRGFRIELGEIEATLRQHPQVLHAIVVIHQEMPRQKRLVAYVVGKGG
                     MTPNVNDLKSWLKDRLPAYMAPSDWVTLDELPRTPSGKINRAALPAPAGDQAVETTTF
                     APPQTLIEELLAAIWQQVLKLEFVSRDDNFFWLGGHSLLATRITSRIRDTFHVELPVR
                     TLFESPTIAELASRIEQLTQSGSVIESLPLSRRPADEPIAVSHAQE"
BASE COUNT          498 a          663 c          697 g          515 t
ORIGIN      
        1 gttcctgcgc gtgcgacacg gcgattggtt cgtctgccgg acgacggctc agcggcagtg
       61 actcgataac agaacctgat tgcgtcaatt gctcgatacg gctagccagc tccgcgatcg
      121 tgggcgactc gaacagggtg cgtaccggta attcgacatg gaacgtgtcg cggatgcgag
      181 acgtaattcg cgtggccaac agggagtgac cgcccaacca gaagaagttg tcgtctcggg
      241 aaacgaattc gagtttcaac acctgctgcc agatagcggc cagcagctct tcgatcagtg
      301 tctgcggagg cgcaaaggtt gtggtctcaa ctgcctgatc tccggccggc gccggcaagg
      361 cggcgcgatt gatctttcca ctcggtgtgc gtggcaactc gtcgagcgtg acccagtccg
      421 acggcgccat gtaagcgggc aaacgatcct tcagccacga cttcaggtca ttgacgtttg
      481 gtgtcatccc gcctttacca accacgtaag cgaccaaacg cttctggcgc ggcatttcct
      541 gatggatgac gacgatggcg tggagcacct gcggatgctg tctgagcgtt gcctcgattt
      601 caccgagctc gatgcggaag ccgcgaatct tgacctgcgt gtcgatgcgg ccgagaaact
      661 caatcgtgcc gtcaggcaga taacgagcga gatcgccggt gcgatagagg cgatcggagc
      721 caccgtcgaa tgggttagga acgtaccgct cggccgtgag atccggtcga tcgaggtaac
      781 cgcgtgagag gttttcgccg cctatgaaca attccccagc cacgccgatc ggcgccggct
      841 gcaggcggga ctccaaaata tagatccggg agttggcgat cggccgtcct attggcgcga
      901 gggtgggcca accggctgaa tcgcccgtga gttcatgctg cgtaacgacg tgggtttccg
      961 atggtccgta gtgattgtag aggccggaat tcagccgttc gcagagttgc ctgatctgtg
     1021 gcgtgcattc caattgttca cccgctgcga caacgtcacg gagacttacc ggcaatggac
     1081 caccctgctc acatgcttca gccaaatgct gcaagtagac gaaaggaaga tcgactcgct
     1141 cgacctgttc catcgacaag tagctcagca tgcgattgac gtcatgacgt tgctcgttcg
     1201 ttaccagcaa caaggttcca ccggagcacc acgtggtgaa gatctcctgg aacgaaacgt
     1261 cgaagctcaa cgaagcaaac tgaagtgttc ttgcgggtgc gggaaagtat cttgtttgcc
     1321 agcagaccag gttgcccaac gctcgatgcg tcatggcgac gcctttaggc acacctgtcg
     1381 aaccggaggt gtaaatcacg ttgacgagat tctcgggatc gatttgtacg cgcggattgg
     1441 tgcggctgct gcccgcgatc tgctcccaat ccctgtcgag gtaaagaact ctgacgtctg
     1501 tttccggaag acttgaagca ttggtctcat tcgtcaacag caccaggcat cgagcgttag
     1561 caagcatcag actgagacgt tcagccggat acgccggatc gagcggcacg taagcagctc
     1621 ccgctttcaa gctggcgagc actgccacga ccatctcgag actcggcccg agacagattc
     1681 cgacgcgcgt gtcgggtccg gctccaaaac ttctaaggta atgtgcgagc tgattcgctc
     1741 tcgcattcag ctcgtggtaa ctcaactgct gatcgttgaa ctgaacggcc ggcgcgtccg
     1801 gcgtgcgctc gacctgctgc tgaaacagat tcaggaaaga gggctcggtc cacgatgccg
     1861 cggtgtcgtt ccagtgtgtg agaatctgcg cttgctcggc ttcgtcgagc aagggcacgt
     1921 tggagagccg ttgtcccgga tctgcggcca gagcttccag cagacgttgc cagtgcttcg
     1981 caaagcgatc gatcgtggtt ctatcgaaca ggtcggtgcg atagctgagg gaacagttga
     2041 gtccctgcgc ttccgcaatc tccagagtca ggccaaactt ttccgtgccg gagcttgatt
     2101 cgatcaggct tatcgtcacg tcttgcactt ccatcagtgt gcgaggcttg ttattgaaga
     2161 tgaacatcac ctcgaacaat ggtccgtgac tcaagttccg ctcgggatgc agctcctcca
     2221 caagtttttc aaatggaaga tcctgatgcg tttgtgcttc cagaaccact tctctaacgt
     2281 ggtccaatac cgttcgcagc gttgcatcgc cggcgagcct ggtccgtatc agtaaggtgt
     2341 tgacaaagac tccgatcagg ttttcggtat cca
//
LOCUS       DASWTX010000929         2532 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_249834, whole genome shotgun sequence.
ACCESSION   DASWTX010000929 DASWTX010000000
VERSION     DASWTX010000929.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2532)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2532)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2532
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249834"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..421
                     /locus_tag="VGD38_14005"
     CDS             <1..421
                     /locus_tag="VGD38_14005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729187.1"
                     /translation="ITLVALLLTAFVAVMAQQPAGQSSDQKKAAESGCCKDHSCPMKK
                     EGATASADAKHDCCGDSCSMKKEGATANADAKPANADGATATADAKHDCCGDSCDMAN
                     HAKHAGTHDKKMHAADGSCCKAKSKDAKQKDAKEKSN"
     gene            501..983
                     /locus_tag="VGD38_14010"
     CDS             501..983
                     /locus_tag="VGD38_14010"
                     /inference="COORDINATES: protein motif:HMM:NF041379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYCXC family (seleno)protein"
                     /protein_id="HEY0729188.1"
                     /translation="MNKPWLIIAGIAILGVAAIVMVNSKSTPPPQPQAPQSEHLTSHP
                     PIETPASTAKTVPAHFEHAPSRSSLGPTLQPEQFTGLVRDAYRAVREIPQTIAQMPCY
                     CHCDRGMGHKSLYSCFEDDHASHCAVCVNEALLALKLEREQKLTPAQIRDRIVQQFGQ
                     "
     gene            1001..1537
                     /locus_tag="VGD38_14015"
     CDS             1001..1537
                     /locus_tag="VGD38_14015"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEY0729189.1"
                     /translation="MTKYAFLFAFVVAVVLACSPVNAVSELPAVGAAAPAFNLVNNEG
                     KQVSLNDYKGKWVVLYFYPKDFTSGCTLQARNFQRDLAKYDAANAVILGVSVDTAESH
                     KEFCAKEGLNFKLLSDPEAKVSTQYGSVMEYQGAKLSARNTFIIDPQGKIAKVFEKVK
                     VGGHSDEVLAALAELKKG"
     gene            complement(1538..1912)
                     /locus_tag="VGD38_14020"
     CDS             complement(1538..1912)
                     /locus_tag="VGD38_14020"
                     /inference="COORDINATES: protein motif:HMM:NF023036.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-binding protein"
                     /protein_id="HEY0729190.1"
                     /translation="MARKGWMTREVRVVIACLSLTFVAACGVHDNPPKPASTPTPVSG
                     PAAAVQTNQYKAEGVVKVINPKGPAIEIDHGNVEGLMPAMQMEFPVTDAYLLNGLAVN
                     DRIDFTIENATDGMKVVAIKKK"
     gene            complement(1891..>2532)
                     /locus_tag="VGD38_14025"
     CDS             complement(1891..>2532)
                     /locus_tag="VGD38_14025"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HEY0729191.1"
                     /translation="ELFVAHSTDGGKTFSANRKVAENACPCCKVALAVSPDGTLYAGW
                     RQVLPGNFRHIAVAASTDGGASFSAPVIVSDDKWMLQGCPVSGPSLAADASGTLKVVW
                     YAAGENAAPGLYFAETRDKGRTFSPRSLLMQETVKGTPALVGANDRAVAIWQGAVGQQ
                     PETKARELGGAGAVVGVAANAELPSGVLSKGKLFVAYITKVGEKRSVWLAKVG"
BASE COUNT          574 a          744 c          717 g          497 t
ORIGIN      
        1 gattaccctc gtcgccctgc ttttgaccgc tttcgtcgcc gtcatggccc aacaacctgc
       61 tggtcagagt agcgaccaga agaaagccgc cgaatcgggt tgctgtaaag accattcgtg
      121 cccgatgaag aaggaaggcg cgaccgccag cgccgacgcg aagcatgatt gctgcggtga
      181 ttcgtgcagc atgaagaaag aaggcgcgac cgcgaacgcc gacgctaaac cggcgaacgc
      241 cgacggcgcc actgcgaccg ctgacgcgaa gcatgattgt tgtggcgact cgtgcgacat
      301 ggcgaaccac gccaagcacg ccggtacgca cgacaagaaa atgcatgcgg ccgacggctc
      361 ctgctgcaaa gcaaagagca aagacgcgaa gcagaaggac gcaaaggaaa agtccaacta
      421 aggctgttca tcttctctcc cgcaaaggcg cgtcctttgc gggagagcca taatcaaaat
      481 ctttccggag aagtacagta atgaataaac cctggctgat tatcgcaggc atcgctatcc
      541 tcggcgttgc ggcaatcgtg atggtcaact ccaagtcgac cccgccaccg caaccgcaag
      601 cgccgcagtc ggaacatcta acatcacatc ctcccatcga aacgccggca tcgacggcga
      661 aaaccgtgcc cgcgcacttc gaacacgcgc cgagccgttc gagtcttggt ccaacgctgc
      721 aacccgaaca gttcaccggg ctggttcgcg acgcgtatcg cgcagtgcgt gagataccgc
      781 aaacgatcgc gcagatgccg tgttactgcc attgcgaccg cggcatgggc cacaagagtc
      841 tctacagttg cttcgaagac gatcacgctt cgcattgcgc ggtatgcgtc aacgaggctt
      901 tgctggcgtt gaaactcgag cgtgaacaga agctcacgcc cgcgcagata cgagatcgca
      961 tcgtgcaaca attcggacaa tgagggaggg ttaaaaacta atgactaagt acgcttttct
     1021 tttcgctttc gtagtggccg ttgtgctggc ttgcagtccg gtgaacgctg ttagtgaatt
     1081 accggcggtg ggagcggctg cgccggcttt caatctcgtc aataacgagg gcaagcaagt
     1141 tagtctcaac gactacaaag gcaaatgggt ggtgctttac ttctacccga aagacttcac
     1201 gagcggctgc acgctccaag ctcgcaactt ccagcgcgac ctcgcgaagt atgacgccgc
     1261 gaatgcggtg attctcggcg tgagtgtcga cacggcggag tcgcacaagg agttctgcgc
     1321 gaaggagggt ttgaacttca agctgctttc ggatccggaa gcgaaagttt ccacgcagta
     1381 tggttcggtg atggagtacc agggcgcgaa gctctccgcg cgcaacacgt tcatcatcga
     1441 cccgcagggc aagatcgcga aagtgtttga gaaggtaaag gtcggcgggc acagcgacga
     1501 agtgctggcg gcgctggctg aattgaaaaa agggtaatta cttctttttg attgcaacca
     1561 ccttcatgcc gtcggttgcg ttctcgatgg tgaagtcgat ccggtcgttg acggccaacc
     1621 cgttcaggag gtaggcgtca gtgaccggaa attccatttg catggcaggc attagtccct
     1681 cgacgttgcc gtgatcgatc tcgatcgccg gacctttcgg gttgattact ttcacgacgc
     1741 cttcggcttt gtactgattg gtctgaaccg cagccgcggg gcctgaaacg ggcgttggag
     1801 ttgaagccgg cttgggcgga ttgtcgtgaa cgccgcacgc cgcgacgaat gttagcgaca
     1861 aacaggcaat cactactcga acttcacgcg tcatccaacc tttgcgagcc atacgcttcg
     1921 tttttcacca acctttgtaa tgtaagcgac gaacagtttg cctttgctca acacgccgct
     1981 cggcaactcg gcattcgccg cgacaccgac tacggcaccc gcaccgccaa gctcgcgcgc
     2041 cttcgtctcg ggttgttgtc cgactgcgcc ctgccagatt gccacagcgc gatcgtttgc
     2101 gccgacaagc gccggtgtgc ctttgacagt ttcctgcatc agcaaactgc gcggcgagaa
     2161 cgtgcgtccc ttgtcgcgtg tctcggcgaa gtaaagtccg ggtgctgcgt tttcaccggc
     2221 agcataccaa actactttca aagttccact cgcatcagcc gcgagtgatg gaccagaaac
     2281 cggacagccc tgcaacatcc acttatcgtc gctgacgatc accggcgcag agaaactcgc
     2341 gccgccatca gttgaagcag caaccgcgat gtgccggaag tttcccggca gcacttgccg
     2401 ccaacccgcg tacaacgtgc cgtcaggcga aacagcgagc gcgaccttgc aacacggaca
     2461 cgcattctcg gcgaccttgc gattcgccga gaacgtcttg ccgccatcgg ttgaatgcgc
     2521 gacgaagagc tc
//
LOCUS       DASWTX010000930         2963 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_249835, whole genome shotgun sequence.
ACCESSION   DASWTX010000930 DASWTX010000000
VERSION     DASWTX010000930.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2963)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2963
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249835"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1104)
                     /locus_tag="VGD38_14030"
     CDS             complement(<1..1104)
                     /locus_tag="VGD38_14030"
                     /inference="COORDINATES: protein motif:HMM:NF013395.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HEY0729192.1"
                     /translation="MKKSKFGVVAKTLVAFSAVLFVLTISLTTATMAPLNEGFEAGGK
                     TAYAAGNVTLGTGSWFMDEALTGNLSTDRKTGSFSARIREAGRVRMNFNKSGAGTVSI
                     QHAVFSSDGSSTWQLWWSTNNGSTWTQVGSTVTTSSTSLQTANFTVDNVNAIRFEIRK
                     VSGGANRINIDNIQIGDFSAPTPTPTPVASEHLTMGNPSNAVTNVTVPNNYLMEKPQY
                     SLSYSRDNGGPNWVSWHLDNSWLGSTPRQDDFRADTTLPTGWYRVQATDYSGSGFDRG
                     HMCPSADRTITVTANSATFLMTNMIPQLPANNQGVWANLESYSRTLVSQGNELYIISG
                     GHGLQFFIANGRVAVPAQTWKVIIVLPAGSNDVS"
     gene            complement(1444..2112)
                     /locus_tag="VGD38_14035"
     CDS             complement(1444..2112)
                     /locus_tag="VGD38_14035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729193.1"
                     /translation="MKLEFKNNLGTAATVAKVAKFGFGGLSAIGSKGGDTTDEPVALY
                     RRENGTVVVQGKQHLLAFDPRTRNIVWSVKYEAPGVPGWQKVAMAGLTALAYTSATAA
                     AASSYYGTAENRWANSQRINSLAAYEQFVSKRYSATKSTGNYVCLLTTVKEGKEKGAG
                     LIGVHMESGRGDRQIMFKDKDPDYQVDEAEGRVFNLRNSKELSAFSVDAAPPVVEEKA
                     EKKN"
     gene            2132..2857
                     /locus_tag="VGD38_14040"
     CDS             2132..2857
                     /locus_tag="VGD38_14040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729194.1"
                     /translation="MPPDAEIAPFYVEAESLHRRSFDLSAGLRSEFPQTEVYRRFVAA
                     TSINLGTAMARVGKGEEGIPYILRALDILRAISEQDPKNNEAKRDVAELWQYMAFARD
                     AMGQNAEAVKANLESLRILEEITTNDPSNFEFLKQTHLTYNKTGDIFLRQGKLTDALA
                     YYRKGMDYVAQMSKLNDNSQIAVLRSESNRKVGEAQLAIAAAHKDSTALADARSHLLK
                     AQEDLVNLQRRNELGKNYEHNCP"
BASE COUNT          623 a          857 c          837 g          646 t
ORIGIN      
        1 tgaaacgtcg ttactcccgg ccggcaacac gatgatcacc ttccacgttt gcgcgggcac
       61 tgccacacga ccgttcgcaa tgaaaaactg caaaccatga ccaccggaaa tgatgtaaag
      121 ctcgttgcct tgtgaaacga gtgttcggct gtaactttcc aggttggccc acacgccctg
      181 gttgttagcc ggaagctgcg gaatcatgtt ggtcatcagg aacgtcgcgg agttcgcggt
      241 gacagtgatc gtgcgatctg ctgaaggaca catgtggccg cgatcgaagc ccgagccgga
      301 atagtccgtt gcttgaactc gataccaacc ggtcggcaga gtcgtatccg cgcgaaaatc
      361 atcctggcgt ggcgtgcttc cgagccacga gttatcgaga tgccagctca cccagtttgg
      421 cccaccgttg tcgcgactgt aagacagcga gtactgcggc ttctccatca ggtaattgtt
      481 cggcaccgtc acgttggtaa cggcgttgct cgggtttccc atcgtgagat gttcgctcgc
      541 gacgggtgta ggagtcggag tcggagcaga gaagtcgcca atctgaatat tgtcgatgtt
      601 gatgcgatta gcgccgccgg agactttgcg gatctcaaag cgaatcgcgt tgacgttgtc
      661 gacggtgaag tttgctgttt gcagtgacgt cgagctggta gtcacggtcg agccgacctg
      721 cgtccaggtg ctgccgttgt ttgtcgacca ccagagttgc cacgtgctcg agccgtcact
      781 gctgaacact gcatgttgaa tcgaaacagt tcccgcgccg ctcttgttga agttcatgcg
      841 cacacggccg gcctccctga tgcgcgcgga aaaagaacct gtctttctat cagtcgagag
      901 attgcccgta agcgcttcgt ccatgaacca cgacccggtt cccagcgtca cgttacccgc
      961 cgcgtaggca gtcttgccgc ccgcttcgaa tccttcgttg agcggcgcca tcgttgccgt
     1021 tgttaatgaa atcgtcagga cgaacagcac cgcagaaaat gcaaccagcg ttttggcaac
     1081 gactccgaac ttcgattttt tcatctattg cccctttcct ctctagtggt ccgccggcag
     1141 tcacactgca gatatgtggc cggcgaacag cggttgatga cgtagtaagc agatcgacac
     1201 gcgcctgcgt acgtttgtgt tctgggacgg gagccccaag gcgctatgcc gctggggtga
     1261 gagggtgatt gagggttact gtctggacat gcttgcgcgg tttataccac ggccagcagg
     1321 catgtgaata gataagtctt tgttaactcg tgaaaagttt atgtcgacat tggaccaaaa
     1381 gagtaaacgg caggggcggc aaccctgccg tttcggggtg tgaggtggtg gagtcgttag
     1441 gggttaattc ttcttctcgg ctttctcttc aacgaccggc ggtgcggcgt ctacggagaa
     1501 tgccgacagt tctttcgagt tgcgcaggtt gaatacgcga ccctcggcct cgtccacctg
     1561 gtaatcagga tctttgtctt tgaacatgat ctggcgatcg ccgcggccgg actccatgtg
     1621 cacgccgatc aaaccagcgc ctttctcttt gccttccttc acagtcgtca gcaggcagac
     1681 gtagttgccg gtgctcttcg tcgcgctgta gcgtttgctg acgaattgtt cgtaggctgc
     1741 gagtgagttg atgcgctgac tgttggccca acggttttcg gcggtgccgt agtaactgct
     1801 cgccgctgcc gctgttgcgg acgtgtaagc gagcgcggtc aaacccgcca tcgcgacttt
     1861 ctgccaaccc ggcacgcccg gcgcttcata cttcaccgac cagacgatat tgcgtgtgcg
     1921 cggatcgaaa gcgagcaggt gttgtttgcc ttgcacgacg acggtgccgt tttcacgacg
     1981 gtacaacgcg acgggttcgt ctgtcgtgtc accacctttc gaaccgatcg ccgacagacc
     2041 gccaaaacca aacttcgcaa ccttcgctac tgtcgctgcg gtgccgagat tgttcttgaa
     2101 ctccagcttc atcttgtagg cttcttttgc cttgccgcct gacgcggaga tcgcgccctt
     2161 ctacgttgaa gccgagtcgt tgcatcgccg ctcgttcgac ctgagtgcgg gattgcgtag
     2221 cgagttcccg cagacggagg tctaccgccg cttcgtcgcg gccacgagca tcaatctcgg
     2281 cacggcgatg gcgcgcgtcg gcaaaggtga agagggaata ccctacatcc tgcgcgcgct
     2341 cgacatcctg cgcgcgatct ccgagcagga tccgaagaac aacgaagcca agcgcgacgt
     2401 ggccgagctg tggcaataca tggccttcgc tcgcgacgcg atgggccaga acgcggaagc
     2461 cgtcaaagcg aatctcgaat cgctgcggat tctcgaagag atcacgacga acgatccgtc
     2521 aaacttcgag ttcctcaaac agacgcacct cacctacaac aaaacgggcg acatctttct
     2581 caggcaaggg aagctcaccg acgcgctcgc ttactatcgc aaaggcatgg attacgtcgc
     2641 gcagatgtcc aagctcaacg acaactcaca gatcgcggtt ctgcgcagcg agtcgaaccg
     2701 caaagtcggt gaagcccaac tcgccatcgc cgccgctcac aaagactcca ccgccctcgc
     2761 cgacgcccgc tcacacctcc tgaaagcgca ggaagatcta gtgaacctgc aacgcagaaa
     2821 cgaactgggc aaaaactacg aacacaactg tccctgatct cagcggagct cgaaaagaca
     2881 cagtccaact cttgacgcag agttcagaga gtcagacgga agaggtgcac aatactttcg
     2941 agcctcgcgc caaatagttt ggg
//
LOCUS       DASWTX010000931         1930 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_167287, whole genome shotgun sequence.
ACCESSION   DASWTX010000931 DASWTX010000000
VERSION     DASWTX010000931.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1930)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1930)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1930
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167287"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..461)
                     /locus_tag="VGD38_14045"
     CDS             complement(<1..461)
                     /locus_tag="VGD38_14045"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: protein motif:HMM:NF018242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HEY0729195.1"
                     /translation="MGGSEEIATQVVEDEDYERVSRAICLVSGGMDSCVTAAVAHHEN
                     DELAFLHVSYGQRTEQRELRAFEALADHYDVKLRLVISLEHLARIGGSSLTDPSIAVT
                     PADLTSRSIPSSYVPFRNAHLLAAAVSWGEVIGANAIYIGAVAEDSSGYPD"
     gene            complement(461..1105)
                     /locus_tag="VGD38_14050"
     CDS             complement(461..1105)
                     /locus_tag="VGD38_14050"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY0729196.1"
                     /translation="MLRVTEIFRSIQGESTHAGRPCTFVRLTGCPMRCVWCDSEYTFT
                     GGEHVSQDDVMQQVHSLGCKLVEVTGGEPLAQKEGFLLIRRLCDEGFEVLVETGNYVS
                     TADLDPRAKVILDIKCPASGEEARNEWSNVERLRADMDEVKFVVADEGDWLYAKRVIQ
                     QHDLERRTLAVLISPVWGRIDLQQLANWVAGSGLNVRMQLQLHKYIWGPDVKGV"
     gene            1198..>1930
                     /locus_tag="VGD38_14055"
     CDS             1198..>1930
                     /locus_tag="VGD38_14055"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0729197.1"
                     /translation="MADKSGDITKLAREGAARLIARAADSRSLTADVLSPRVSAAVAK
                     YLLRDEPNTPAAEINKFMDEMQADDLCLIVACEQGDENAWNDLVERFTATVRSAARSV
                     SSNEDAAEDLAQSIWAELYGLRVRDDGRRATKLAYYSGRGSLAGWLRAVVAQLSVDAF
                     RKQSKLVQTEEDTDLDRLARDASISETSTFAAAGVQNPEQSLTNRFTRENLQQALTQA
                     VGELAAEDRLLVKLYYFDNLRLREAG"
BASE COUNT          401 a          589 c          560 g          380 t
ORIGIN      
        1 cagtcgggat agcccgaaga gtcttccgcg accgctccta tatatatggc gttcgcgccg
       61 atgacttcgc cccagctaac agcagcggcg agcaagtggg cgttgcggaa gggaacgtag
      121 ctcgacggaa tgcttcgcga agtcagatcg gcaggcgtga ctgcgatcga cggatcggta
      181 agcgaagagc cgccgatgcg cgcgagatgt tcgagcgaga tcaccagacg cagcttgacg
      241 tcataatgat ccgcgagcgc ttcaaaagcc cgcagttcgc gttgctctgt tctttgaccg
      301 taagagacgt gtaaaaaggc gagctcgtca ttttcgtgat gagcaacagc ggctgtaacg
      361 cacgagtcca tgcctccgga gacgagacag atagcgcgcg agactcgctc ataatcctca
      421 tcttctacga cctgggtcgc aatctcttca gagccgccca tcacactcct tttacgtctg
      481 gtccccagat gtacttgtgt agctgcaatt gcattcgcac gttcagaccg cttcccgcga
      541 cccagtttgc caactgttgc agatcgatcc ggccccacac gggcgagatc aggaccgcga
      601 gtgttcgcct ttcgagatcg tgttgctgaa tcactcgctt cgcgtaaagc caatcgcctt
      661 cgtcggcgac gacaaacttg acctcatcca tgtccgcgcg caggcgttca acattggacc
      721 attcgtttct cgcttcctcg cctgaagccg ggcacttgat gtcgagaatc accttggcgc
      781 gcgggtccag atcggcggtc gagacatagt ttcccgtctc gaccagcacc tcgaaaccct
      841 cgtcacaaag ccgccggatc agcaggaagc cttccttctg cgcgagtggt tcgccgcccg
      901 tgacttcgac cagtttgcaa cccagcgagt ggacttgttg catcacatca tcctgggaga
      961 cgtgctcgcc gcccgtaaac gtgtattcgc tgtcgcacca gacgcagcgc atcgggcagc
     1021 cggtcagacg cacaaacgtg cacggccggc ccgcgtgggt cgattcacct tgaatggaac
     1081 gaaagatttc ggtgacgcgc agcatcgacc ggaatctaac acggttcgac aagaatcaag
     1141 aaccgcctgc actcccctgc ggtcatcacc taaagaggtg ctacgattac cccgtttgtg
     1201 gcagacaaaa gcggcgacat tacaaagcta gctcgcgaag gcgccgcgcg cctgatcgcg
     1261 cgtgccgctg atagccgttc gctcaccgcg gacgtgctgt cgccgcgcgt gtcggcggct
     1321 gtcgcgaagt atctcctgcg tgacgagccg aacactcccg ccgctgagat caacaagttc
     1381 atggatgaaa tgcaggctga cgatctgtgt ctgatcgtcg cttgcgagca gggcgatgag
     1441 aacgcgtgga acgatctcgt cgagcgtttc accgcgaccg tccgatcagc tgctcgctcg
     1501 gtcagctcga acgaagacgc ggcggaggac ctggcccaat cgatctgggc cgagctttac
     1561 ggattgcgcg ttcgcgacga tggccgccgc gcaaccaaac tggcctatta ctccggacgc
     1621 ggttcgctcg ctggttggct gcgggccgtc gtcgcacaac tgtcggtcga cgcgtttcgc
     1681 aaacaatcga agctcgtgca gaccgaagaa gacacagatc tcgatcggct ggcgcgcgac
     1741 gcaagcatca gcgaaacgtc gacgttcgct gcggcgggtg tgcagaaccc ggagcagtcg
     1801 ctcacgaatc gtttcacccg cgaaaacttg cagcaggcgt tgacgcaggc tgtgggcgag
     1861 ctcgcggcag aagatcgtct gcttgtgaaa ctctactatt ttgacaacct tcgattgcgc
     1921 gaggcaggcg
//
LOCUS       DASWTX010000932         3500 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_167297, whole genome shotgun sequence.
ACCESSION   DASWTX010000932 DASWTX010000000
VERSION     DASWTX010000932.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3500
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167297"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..249
                     /locus_tag="VGD38_14060"
     CDS             <1..249
                     /locus_tag="VGD38_14060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729198.1"
                     /translation="DMLVETIDPNCTVVQSEQTVTEDISAQTATLFTTLEIPVGRFIR
                     VTSEQYRTTAHAAIRSRTTGADGIPRIHVEFVDKQWPL"
     gene            351..965
                     /locus_tag="VGD38_14065"
     CDS             351..965
                     /locus_tag="VGD38_14065"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEY0729199.1"
                     /translation="MLPQWALELVRPTVGVFSRALWKIEFVGVENIPATGGVVIAANH
                     QTYIDPFWLSLQIKRPIRYLAWSAAFSWPVVGRCLTWLGAWPLALEGSDPAAIRRSIQ
                     WLRDGGAVVIFPEGGRSTSTGEMERFKAGAVRLALEANVPILPVTIKGGNRIWPRGWR
                     VPRLGKVVVTYHPLYHPAQPPEEETRAFARRESERLAKVIQSAL"
     gene            complement(962..1735)
                     /locus_tag="VGD38_14070"
     CDS             complement(962..1735)
                     /locus_tag="VGD38_14070"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008934 - inositol monophosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006020 - inositol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046855 - obsolete inositol phosphate
                     dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HEY0729200.1"
                     /translation="MLNFAIDVAREAGGVLVQRLGVAKITNKGDIDLVTEADLASEKL
                     IIERIRSYFPQHGILAEESGEAVLTGGKRSEWKWIIDPLDGTTNYAHSYPCFCVSIAL
                     EHAGVIEIGVVYDPVRDEMFAAERGSGATLNDRKIRVSSVEELSGAMVCTGFPYNVRE
                     RPNFTRDVANFTMAAQAVRRDGSAALDLAYVACGRFDGFWEDGLSPWDIAAGILLIEE
                     ARGKVTNFDDQPLSIYTPKVLASNGLVHDAMLRVLRQGF"
     gene            complement(1736..2611)
                     /locus_tag="VGD38_14075"
     CDS             complement(1736..2611)
                     /locus_tag="VGD38_14075"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase family protein"
                     /protein_id="HEY0729201.1"
                     /translation="MRIVNRLVGVVAVCFVLCTSVAARVETVRLQSKLVNATLPYNVI
                     LPPDYNTARATRYPVLYLLHGLTGHYSDWLTKTNIADYAAGYRLIVVMPEGNDGWYTD
                     SSIVPTDKYESYILQELLPDVQQRYRTIEARYGRAIAGLSMGGYGAIKFGLKSPQTFV
                     FAASMSGAFAITRFDDKDVPELWRPSLKLFGPPGSETRRANDLFEIIGKLPAGRIQSL
                     PFFYFDCGTEDLSLIFPYNRELSALMFEKKIPHEYRELPGDHSWKYWDSQVQEVLRIA
                     ARKMPRAKLAKPRGV"
     gene            complement(2608..>3500)
                     /gene="hutU"
                     /locus_tag="VGD38_14080"
     CDS             complement(2608..>3500)
                     /gene="hutU"
                     /locus_tag="VGD38_14080"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: protein motif:HMM:TIGR01228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016153 - urocanate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HEY0729202.1"
                     /translation="AVTDQTSAHDPLNGYVPAGMSLDDAAELRAGDPAAYVEKSTASM
                     ARHVEAMLALQRSGAVAFDYGNNIRKQALDAGCTNAFDIPGFVPEYIRPLFCEGKGPF
                     RWVALSGDAEDIRKTDDLALEMFPDDRTLNRWLRLARDRVHFQGLPARICWLGYGERA
                     EMGEAINDLVKRGDLKAPIAIGRDHLDTGSVASPFRETEGMKDGSDAVADWPILNALL
                     NTASGASWVSFHHGGGVGIGYSLHAGQVSVADGTDEAAKRLNRVLTNDPGLGVARHVD
                     AGYDEAANTAREKQIKIPLL"
BASE COUNT          745 a         1058 c         1001 g          696 t
ORIGIN      
        1 gacatgctcg tcgagacgat cgatccgaat tgcacggtgg tgcagagcga acagacggtc
       61 accgaggaca tcagcgcgca aaccgcaacg cttttcacga ccctcgagat tccggtgggg
      121 cggtttattc gagtgacgag cgagcaatac cgcacgacgg cccacgcagc cattcgctcg
      181 cgcacaaccg gcgctgacgg catcccgcga attcacgtcg agttcgtaga taagcagtgg
      241 ccgctttaaa ggggatttaa gaacaccgat ttcttttgag ttcagacgac ctaaaaaaca
      301 cggggacatt gccgtctaaa aaagcgcccg cgcgggcagg aacaggaacg atgcttccgc
      361 aatgggcgct cgaactcgtg cgtcccacgg tcggcgtgtt tagccgtgca ctctggaaga
      421 tcgagttcgt gggagttgag aacattcccg cgacaggcgg agtcgtcatc gcggcgaacc
      481 accagactta catcgatccg ttctggctct cgctgcaaat caaacgcccg atccgttatc
      541 tcgcgtggag cgccgcgttt agctggcccg ttgtgggacg ctgcctgacg tggctcggcg
      601 cgtggccact cgcactcgaa ggcagcgacc cggctgcgat ccggcgttcc attcagtggt
      661 tacgcgacgg cggtgcggtg gtgatattcc ccgaaggcgg gcgcagcacg tcgacgggcg
      721 agatggaaag attcaaggcc ggcgcggtgc gactggcttt ggaagcaaac gttccgatac
      781 tgccggttac gatcaaaggc gggaatcgca tctggccgcg cggttggcgg gtgccgcgtt
      841 tgggcaaggt cgtcgtgacg tatcatccgc tttatcatcc ggcacaacca cccgaagaag
      901 agacgcgcgc attcgcacgg cgcgaaagcg aacgcctcgc gaaggtgatc caatccgcgc
      961 tttaaaatcc ctgtcgcaaa actctcaaca tggcgtcatg gaccagtcca ttgcttgcta
     1021 aaactttcgg cgtgtaaatg ctgagcggct gatcatcgaa gttagtaact ttcccgcgcg
     1081 cttcctcgat caggagtatt cccgccgcga tgtcccacgg actcagacca tcttcccaaa
     1141 atccatcaaa ccggccacac gcaacgtaag ccagatctag cgccgcggaa ccatcgcgtc
     1201 tgacagcctg cgccgccatc gtgaagtttg cgacatcgcg cgtgaagttc ggccgttcgc
     1261 gaacgttgta aggaaagccg gtgcaaacca ttgcgccact caattcttcg actgacgaaa
     1321 cgcggatctt gcggtcgttc agcgtcgcac cgctaccgcg ttcggccgca aacatctcat
     1381 cacgcaccgg atcgtaaacc acaccgatct cgatcacgcc cgcgtgttcc aacgcgatcg
     1441 agacgcagaa acacggataa ctgtgcgcgt agttcgtggt gccgtcgagc ggatcgatga
     1501 tccacttcca ctcgctgcgc ttaccgccag tcaaaaccgc ttcgcctgat tcttccgcga
     1561 ggattccgtg ttgtggaaag tatgagcgga tgcgctcgat gatcagtttc tcggaagcaa
     1621 gatcggcctc ggtgacgaga tcgatatcgc ccttgttcgt aatcttggcc acaccgagac
     1681 gttggaccag cacgccgccg gcttcacgcg ctacgtcaat agcaaagttt agcaatcaaa
     1741 ctcctcttgg cttcgcgagc ttcgcccgcg gcatcttgcg cgccgcgatg cgcaagacct
     1801 cttggacctg gctgtcccaa tatttccatg aatgatcgcc cggcagctcg cggtactcgt
     1861 gcgggatctt cttctcgaac atgagcgcgc tcaattcgcg gttgtagggg aagatcagcg
     1921 acaaatcttc ggtgccgcag tcgaagtaaa agaaaggcag ggattggatc cgcccggcgg
     1981 gcagcttccc gatgatttca aacagatcgt ttgctctgcg ggtctcgctt cctggcgggc
     2041 cgaacaactt cagcgaaggc cgccacaact ccggaacgtc tttgtcatcg aagcgcgtga
     2101 tggcaaacgc gccgctcatc gacgccgcaa agacaaacgt ctgcggcgat ttcaaaccaa
     2161 acttgatcgc gccatagccg cccatcgaca gccccgcgat cgcgcgcccg taacgcgcct
     2221 cgatcgtgcg gtagcgctgc tgcacgtcgg gtaggagctc ctgcaggatg tagctttcgt
     2281 atttgtccgt cgggactatc gagctatcgg tgtaccagcc gtcgttgcct tccggcatga
     2341 cgacgatgag ccggtagccg gcggcgtaat cggcgatgtt tgttttggtg agccagtcgg
     2401 aatagtgacc ggtcagaccg tgaaggaggt agagcaccgg ataacgcgtc gcgcgcgcag
     2461 tgttgtagtc cggcggaaga atgacgttgt aaggcagcgt tgcgttgacg agtttgcttt
     2521 gcagccggac tgtctcaacg cgtgctgcga ccgacgtaca cagaacgaaa cagacggcca
     2581 caacgccaac aaggcgattg actattctca tagtagggga attttgatct gcttctcgcg
     2641 cgcggtgttc gcggcttcgt cgtagcccgc atcgacgtgt ctcgcaacgc caagaccggg
     2701 atcgttcgtc aacacacgat tcagacgctt cgccgcttcg tcggtgccgt cagcaaccga
     2761 aacctgcccg gcgtgcagcg aataaccgat gccgacacca ccgccgtgat gaaacgagac
     2821 ccaactcgcg ccgctcgctg tgttcagcaa cgcattgagg atgggccaat cagcgactgc
     2881 gtcggatcca tccttcatcc cttccgtctc acgaaagggt gacgcgaccg atcccgtgtc
     2941 gagatgatcg cgcccgatcg cgatcggcgc tttcaagtcg ccgcgcttca cgagatcgtt
     3001 gatcgcttcg cccatctcgg cgcgttcgcc gtaaccaagc cagcagatac gcgcgggcaa
     3061 accctggaag tgaacgcgat cgcgcgcgag acgcaaccag cgattcaacg ttcgatcgtc
     3121 aggaaacatt tcgagcgcga gatcgtcggt tttgcgaatg tcttccgcgt caccggaaag
     3181 cgcgacccaa cgaaacggtc ctttgccttc gcaaaagagt ggacgaatgt actcgggaac
     3241 gaagcccgga atatcgaacg cgttcgtgca gcctgcatcg agcgcctgct tgcgaatgtt
     3301 gttgccgtag tcaaacgcga ccgcgccgga tctttgcaac gccaacattg cttcaacatg
     3361 ccgcgccatc gacgccgtcg acttctcgac gtacgcagcc gggtcaccgg cacgcagctc
     3421 agcggcatca tcaagtgaca ttcctgcggg cacgtagcca ttcaaaggat cgtgtgcact
     3481 cgtttgatct gtaactgcat
//
LOCUS       DASWTX010000933         2070 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_78165, whole genome shotgun sequence.
ACCESSION   DASWTX010000933 DASWTX010000000
VERSION     DASWTX010000933.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2070
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78165"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..923
                     /locus_tag="VGD38_14085"
     CDS             <1..923
                     /locus_tag="VGD38_14085"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEY0729203.1"
                     /translation="PHGHHRSSDNWRRLSLVLSLTLLYMIAEALGAWWTGSLALLADA
                     GHMFTDVAALALALTAVWFSSRPATSKKTFGYYRLEIIAALVNGVALVVISLFIFYGA
                     YERWLEPPVIQSGPMIAVAAGGLAVNLICAWILHGHDAIDLNIRGAWMHVMGDALGSV
                     AAILAGVCIWLFGWYAADAVFSVFISILIIWGSVRLIRESTNVLLEGTPAHINLAAVE
                     DEILATAGVSDVHDLHVWTITSGREALSAHVIHSESISQAALLRELRTKLHDRFGVDH
                     LTIQMETSDFEDETFHFCHAGTACFRSRRN"
     gene            931..1173
                     /locus_tag="VGD38_14090"
     CDS             931..1173
                     /locus_tag="VGD38_14090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729204.1"
                     /translation="MELSLLLTLDLREQAALQAALVTHGAPDALVTLALTGACRIGSI
                     EEARQLRKWLAEARTAGDSDFAALHVIERALIDFGL"
     gene            1177..>2070
                     /gene="larA"
                     /locus_tag="VGD38_14095"
     CDS             1177..>2070
                     /gene="larA"
                     /locus_tag="VGD38_14095"
                     /inference="COORDINATES: protein motif:HMM:NF033504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050043 - lactate racemase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent lactate racemase"
                     /protein_id="HEY0729205.1"
                     /translation="MSNEIQLPYGRTTLTFRWEGDRFAVVADETSSEKSLTDFEVGAA
                     LDSPIHSPPLDEIIDNDDSVLIVVSDATRPTASAQIVNLLVRRLVQIGVSPSRMAVIF
                     ATGIHRPVTEQEQLELLTPFIVQRLQVLQHDAHDPSKLISFGATESGIEVELSSALQR
                     YSRVILTGGVGYHYFVGFTGGRKSICPGLASAETIKATHMLALDFETGTRRAGVGTGL
                     LDGNAVHEECERIAELVEPAFGINTIVDPSKRAVKMFCGDWRYAHRAACDDYLDQHSV
                     QLPEKRDVVIASCGGFPYDINL"
BASE COUNT          355 a          569 c          674 g          472 t
ORIGIN      
        1 accctcacgg gcatcaccgc tcgtctgaca actggcgccg gttgagcctg gtgctgtcgc
       61 tgacgctgct ctacatgatc gccgaagcgc tcggcgcgtg gtggaccgga tcgctggcgt
      121 tgctcgccga cgcgggccac atgttcaccg acgttgccgc gctcgccctc gcgttgacgg
      181 ccgtttggtt ctcgtcgcgt ccggccactt ccaaaaaaac attcggttat taccgtctcg
      241 agatcatcgc cgcgctggta aacggcgttg cactcgtcgt catttcgctt ttcatttttt
      301 acggtgctta cgaacgctgg ctggagccgc cggtcattca aagtgggccg atgatcgccg
      361 tggccgcggg cggtctggcc gttaacctga tctgcgcgtg gatactgcac gggcacgatg
      421 cgatcgacct gaacatccgc ggcgcgtgga tgcacgtgat gggcgacgcg ctcggttccg
      481 ttgcggcgat actcgcgggc gtttgcatct ggttgtttgg ctggtatgcg gcggacgcag
      541 tgttcagcgt ctttatcagt atcttgatca tctggggctc ggtgcggttg atacgcgagt
      601 cgaccaacgt gctgctggag ggcacgccgg cgcacatcaa tctggcggcg gtggaggatg
      661 agattcttgc gactgcgggc gtttccgatg ttcacgacct gcacgtttgg accatcactt
      721 ccggacgcga ggcgttgagc gcgcacgtga ttcactcgga aagcatttcg caggcggcgt
      781 tgttgcggga gttgcgcacg aagctgcacg accggtttgg tgtcgatcat ctgacgatcc
      841 agatggagac ttcggatttc gaagacgaga cgtttcactt ttgtcacgcg ggcaccgcgt
      901 gttttcgttc gcgaagaaat tgagccggcg atggaattga gtcttttgtt gacgctcgat
      961 ttacgcgagc aggcggcgtt gcaagccgcg ctggttactc acggcgcgcc tgatgctttg
     1021 gtgacgctgg cgttgactgg ggcgtgccgc atcggttcga tcgaagaggc gcggcaactg
     1081 cgcaagtggc ttgcggaagc acgcaccgcg ggcgattcgg atttcgcggc gttgcatgtc
     1141 atcgaacgag cgctgatcga ctttggcctt taacaaatga gtaacgagat ccaactccct
     1201 tatgggcgca ccacactgac gttccgttgg gagggggatc ggttcgcggt cgttgcggat
     1261 gagacatctt cggaaaaatc gttgacggat tttgaagtag gcgctgcgct tgactcgccc
     1321 attcactcac caccgctcga tgaaatcata gacaacgacg attcggtgtt gattgtcgtg
     1381 tcggatgcga cgcgccccac ggcgagcgcg cagatcgtga atctgctcgt gcggcgtttg
     1441 gtgcagatcg gcgtttcgcc gtcgcggatg gccgtgatct ttgcgaccgg aattcatcgt
     1501 cccgtgacgg agcaggaaca gctcgagctg ctgacgccgt ttatcgtgca gcggcttcag
     1561 gtgcttcagc acgacgctca cgatccgtcg aagttgattt cgttcggcgc gactgagagt
     1621 ggtattgagg ttgagctgag cagcgcgttg caacgctact cgcgcgtgat tctcaccggc
     1681 ggagttggtt accactactt cgtggggttc actggcggcc gcaagtcgat ctgtccgggg
     1741 ctcgcgtcgg cggagacgat caaagccacg cacatgctcg cgttggactt cgaaaccgga
     1801 acgcgtcgtg cgggcgttgg gaccgggctg ctcgacggca acgcggtgca tgaagaatgc
     1861 gaacgcatcg cggagctggt cgagccggcg tttggcatca acacgatcgt tgacccctcg
     1921 aaacgggcag tgaagatgtt ttgcggtgac tggcgctacg cgcatcgcgc cgcgtgtgac
     1981 gattacctgg accagcactc ggttcagctt ccggagaaac gcgacgtcgt gatcgcgagt
     2041 tgcggtggat ttccttacga catcaatctg
//
LOCUS       DASWTX010000934         4326 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_206307, whole genome shotgun sequence.
ACCESSION   DASWTX010000934 DASWTX010000000
VERSION     DASWTX010000934.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4326
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206307"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..793)
                     /locus_tag="VGD38_14100"
     CDS             complement(<1..793)
                     /locus_tag="VGD38_14100"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEY0729206.1"
                     /translation="MSNSGTNGRSSVTRPRRLLLCLDGVPHKLIEAARHRGLFDAFGP
                     PTRLLSPFPTMTNVALSAMFDATPPAGYESLYFDRSAGELRGGIRKYLGRRTPDKIPS
                     SYMDDLDYQEPLPFEFLIYVAPEKIWRADMQKFREQFRSAPANRDYFAFLKATDGLLH
                     SQGPGRLAVALESLDKILKEIRAYAGSETEIVMFSDHGMNLEENRRVPLRSELKRRGF
                     DVVIPAFGLCSYIAVYCRDEDRIPAVARASAEVAGVDFAIYRDGNE"
     gene            complement(804..2081)
                     /locus_tag="VGD38_14105"
     CDS             complement(804..2081)
                     /locus_tag="VGD38_14105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729207.1"
                     /translation="MKYLSVLILLLCATVASAQQATPWLTDTERARFEELRRSGLDAL
                     YNIDYEKANRDFKEIVRLYPNHPGGYQLLAARLWIKTLYESRRLQSSLYSSESFYSSG
                     DDKVDPKIVTEFRNLTREARRLAEAKLKQEPKNIEALDFLANTEGLKAAFEEAVERRH
                     FAALRDGNDAVNHHREVLKLDPEYIDAQITIGLYEYVVGSLPLPVKILAGATGFRGSK
                     KRGLKMLEQVAANGRWAQDDAKSVLVLLYTREKRYADVVKLTRELSAKYPRNYLLRLE
                     NADALVSLAAQKRKEKDVAGAVQAEKEAFESFDEMLRDREVRNAAGRALDLIHFKYGE
                     ALLTAGYNDRAAKEFLATTKVDRAEPGLVTMAHLYAARAYDSAGKREEALAQYKEVLS
                     RPNVYDAHEEAKRGMKQAYKAEAIVRAPDVSSN"
     gene            complement(2085..3251)
                     /locus_tag="VGD38_14110"
     CDS             complement(2085..3251)
                     /locus_tag="VGD38_14110"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: protein motif:HMM:NF006050.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEY0729208.1"
                     /translation="MNITHLECGLCGLRHEARRLLNLCRECGKPLLVRYDLERAAQTL
                     TKESLPSRRADLWRYREVLPVENDENIVSFGEGWTPLLHAPRLGERTGIRELYIKDES
                     QNPTQSFKARGMAAAVSMAKELGATKLAVPSAGNAAGALAAYAARAGLECFIFMPRDT
                     PRANVVECEQTGAHVTLMDGLITDCGAEVGRRKEAEGWFDVSTLKEPYRVEGKKTLGY
                     EVAEQLNWELPDVIVYPTGGGTGLIGMWKAFDEMEQMGWIGSKRPRMVTVQAAGCAPI
                     VRAFEDGKRFADEFPNAATTASGLRVPKAIGDFLIIDALRDSGGTAVAVTDEDLIDAV
                     REIGSLEGVFCAPEGAACLPALRKLIDTGLVKDNDRVVLFNTGSGVKYMESFET"
     gene            complement(3352..3900)
                     /locus_tag="VGD38_14115"
     CDS             complement(3352..3900)
                     /locus_tag="VGD38_14115"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEY0729209.1"
                     /translation="MRRLGVSLAVIALVSATSVVLAQGGFKRISEFLNSYEEVPSVSS
                     TGNGEFNARISNDGSRIDWELSYADLEGAIQQAHIHVGNKGVNGGISVFLCTNLGNGP
                     AGTQPCPAPPATISGTIFAADVSPNIPATAAARTQGVNTGEIGELIKAMRAGATYVNV
                     HSTLWPGGEIRSQIDGNNSHNH"
     gene            3999..>4326
                     /locus_tag="VGD38_14120"
     CDS             3999..>4326
                     /locus_tag="VGD38_14120"
                     /inference="COORDINATES: protein motif:HMM:NF019887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIB family hydrolase"
                     /protein_id="HEY0729210.1"
                     /translation="MAIRLLALDLDGTLLNHRGHISERNLKAIESARARGVRVALVTG
                     RRFRDSRPVALELGLDVPLISHNGALTKHAETLQTVAVLLLPLEAARAALQVGRGAGA
                     DALLSDD"
BASE COUNT          905 a         1393 c         1117 g          911 t
ORIGIN      
        1 cttcgttccc atcgcgatag atcgcgaaat caacacccgc tacctccgcg ctcgcacgcg
       61 ccacggccgg aatacgatcc tcgtcacgac aataaacggc gatgtaacta caaagaccaa
      121 acgccggaat cacaacgtca aacccacgcc gcttcaactc cgatcgcaac ggcacacgcc
      181 ggttctcttc gagattcata ccgtgatcgg aaaacatcac gatctccgtc tcagacccgg
      241 cataagcgcg aatctctttc agaatcttgt cgagcgactc caacgcaacc gccagacgcc
      301 ccggtccctg gctgtgcagc aacccatctg tcgctttcag aaacgcaaaa tagtcacgat
      361 tcgcgggcgc gctgcgaaac tgttcgcgaa acttctgcat gtccgcacgc caaatctttt
      421 ccggcgccac gtagatcaaa aactcaaacg gcaacggctc ctggtaatca aggtcgtcca
      481 tgtacgacga cggaatcttg tcgggcgtgc ggcggccgag atatttgcga atcccaccgc
      541 gaagctcacc cgccgaacga tcgaagtaga gactctcgta acccgccggc ggtgtcgcgt
      601 caaacatcgc cgacagcgcc acgttcgtca tcgtcggaaa cggtgagagc agtcgcgtcg
      661 gtggtccaaa cgcgtcgaac agtccccggt ggcgagcggc ttcaatcagt ttgtgaggca
      721 cgccgtcgag acacaacaag aggcgccgcg gacgcgtcac acttgaacga ccattggtac
      781 cactgttaga catgggattt tacctagtta ctgctcacat ccggtgcgcg cacaatcgct
      841 tccgccttgt acgcctgctt catgccgcgc ttcgcttcct cgtgcgcgtc gtaaacattc
      901 ggacgtgaca gcacctcctt gtactgagcc aacgcttctt ctcgtttccc ggctgaatcg
      961 tacgcacgcg cagcgtaaag atgcgccatc gtcaccaacc ccggttcagc gcgatcgact
     1021 ttcgtcgtcg cgagaaattc cttcgccgca cgatcgttat aacccgccgt cagcaacgct
     1081 tcaccgtact tgaagtgaat caaatcaagc gcgcgtcccg ctgcgttgcg cacttcacga
     1141 tcgcgaagca tttcgtcaaa actctcaaac gcttccttct ccgcctgcac cgctcccgca
     1201 acgtccttct ccttgcgctt ctgcgccgca agcgaaacca acgcgtccgc gttctcaagt
     1261 ctcaacaggt aattccgcgg atacttcgcg ctcaactcgc gcgtcagttt caccacgtcc
     1321 gcgtatcgct tctcgcgcgt gtaaagcaac accaaaaccg acttcgcatc gtcctgcgcc
     1381 caacgcccgt tcgccgccac ctgctcgagc atcttcaacc cgcgtttttt ggaaccacga
     1441 aagccagtcg cgcccgcgag gatcttcacc ggcaacggca acgatccaac cacgtattcg
     1501 taaagtccga tcgtgatctg cgcgtcgatg tactccggat cgagcttcaa cacttcgcga
     1561 tgatgattga ccgcatcgtt gccgtcgcgc aaagccgcga agtgccgccg ttcgaccgct
     1621 tcctcaaacg cggctttcaa accttccgtg ttcgcgagga aatcgagcgc ctcgatgttc
     1681 ttcggttctt gtttcagttt cgcttcggca agccgacgag cctcgcgcgt cagattgcga
     1741 aactccgtga cgatcttcgg atcgaccttg tcgtcaccgc tcgaataaaa cgactcggaa
     1801 ctatagagcg acgactgcaa acggcgcgat tcgtaaagcg tcttgatcca gagacgcgcc
     1861 gcgagcaact ggtaaccgcc gggatgattc ggataaagcc gcacgatctc tttgaaatcg
     1921 cgattcgctt tctcgtaatc gatgttgtaa agcgcatcga gaccactgcg tcgcaactct
     1981 tcaaaacgag cgcgctcggt gtcggtgagc cacggcgttg cttgctgtgc agacgcaacc
     2041 gtcgcgcaga gcaaaaggat caaaacgcta agatatttca taagttaagt ttcaaacgat
     2101 tccatgtact tcacgcccga gccggtgttg aataacacca ctcgatcgtt gtccttcacg
     2161 aggccggtat cgatcaactt cctcaacgcc ggcaaacacg ccgcaccttc cggcgcacaa
     2221 aacactcctt caagcgaacc aatctcacgc actgcgtcga tcaagtcttc atcggtcacg
     2281 gccaccgccg ttccacccga atcgcgcaac gcatcgatta tcaagaagtc gccaatcgct
     2341 ttcggcactc gcaagccaga cgccgtcgtc gcagcattcg gaaactcgtc cgcaaagcgc
     2401 ttgccatcct cgaacgctcg cacgatcggc gcacaacccg ccgcctgcac ggtcaccatt
     2461 cgcgggcgct tactgccaat ccagcccatc tgttccatct cgtcaaatgc tttccacatg
     2521 ccgatcaatc cggtgccgcc gccggtggga taaacgatca cgtccggcag ttcccagttg
     2581 agctgttcgg cgacttcgta acccaacgtc ttcttgcctt cgacgcgata gggctctttc
     2641 aaagtggaaa cgtcaaacca accttcggct tcttttcgcc ggccgacttc agcgccgcag
     2701 tcagtgatga gcccgtccat caacgtgaca tgcgcgcccg tctgttcaca ctcgactacg
     2761 tttgcccgcg gcgtgtctcg aggcataaag atgaagcact cgagtccggc gcgggccgcg
     2821 taggcagcga gggcgcccgc cgcgtttccc gcggaaggca cagccagctt ggtagcgccg
     2881 agttccttgg ccatcgaaac tgccgccgcc atgccgcggg ccttaaaact ctgcgtcgga
     2941 ttctgcgact catctttgat gtaaagttcc ctgatgccgg tgcgctcgcc caatctcggc
     3001 gcgtgcaaca acggcgtcca accttcgcca aacgaaacga tgttctcgtc gttttcgacc
     3061 ggcagcacct cgcgatagcg ccacaaatcg gcgcgccgcg acggcagtga ttcctttgtt
     3121 aacgtttgcg ccgcacgttc caggtcatag cgaacgagca gcggtttacc gcactcgcgg
     3181 cagagattga gcaaccgacg tgcctcgtgc ctcagcccgc acaggccgca ttccagatgt
     3241 gtgatgttca tgggttttaa agaataggca ggattggaga atgtgcaagg ggttaggtgc
     3301 tggatgcagc aaaccccttg cactcggagc aaaaaaatct tgcgggatgg cttagtggtt
     3361 gtggctgttg ttgccgtcga tctggctgcg gatttcgccg cccggccaga gagtgctgtg
     3421 aacgttcacg taagtggcgc cggcgcgcat cgctttgatc aactcgccaa tctcaccggt
     3481 gttcacgccc tgcgttctgg cggctgctgt cgccggaatg ttgggactca cgtccgcggc
     3541 gaagatcgtg ccggaaattg ttgccggtgg cgcggggcag ggctgagttc ccgccggtcc
     3601 gttgccgagg ttcgtgcaca aaaacacgct gatgcccccg ttcacaccct tattcccgac
     3661 gtggatgtgg gcctgttgaa tggcgccttc gagatcggca tagctcagtt cccagtcgat
     3721 gcggctacca tcgttactga tccgagcgtt gaattcaccg ttgccggtgc tcgacaccga
     3781 ggggacttcc tcatagctgt ttaagaattc gctaatcctc ttaaatccgc cctgcgccag
     3841 cacgacagac gtcgccgaca ccaacgcgat aactgcaaga gacactccta gtcttcgcat
     3901 cccattttcc tccaaaaatt tgagttgtct gagggggcgc gcataatatc acagcccgtt
     3961 tgatctgtgt atccgtgaat gctactttgt cggtctttat ggcgatacgg ctgttggcgc
     4021 tcgatctgga cgggacactc ctcaatcacc ggggccacat atctgaacga aacctgaaag
     4081 caatcgaaag cgcacgggcc aggggcgtgc gcgtcgcgct cgtcactgga cgccgttttc
     4141 gcgactcgcg gccggtcgcg ctcgagttgg gcctcgacgt tcccttgatc tcgcacaacg
     4201 gcgcactgac caaacacgct gaaacgctgc aaaccgtcgc cgtgcttctg ttgccgcttg
     4261 aagcggcgcg cgccgcgttg caagtcggac ggggcgcggg cgctgatgcc ttattgagcg
     4321 acgatc
//
LOCUS       DASWTX010000935         4019 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_141501, whole genome shotgun sequence.
ACCESSION   DASWTX010000935 DASWTX010000000
VERSION     DASWTX010000935.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4019
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_141501"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..245
                     /locus_tag="VGD38_14125"
     CDS             <1..245
                     /locus_tag="VGD38_14125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729211.1"
                     /translation="DQLVDMRWPQIGAPKSATYTGDGFITIRHRDTEVVQQSLRRIAQ
                     LVRITYSSHSQSPTQTWGHRLENFKELNRPAWDQAN"
     gene            262..1029
                     /locus_tag="VGD38_14130"
     CDS             262..1029
                     /locus_tag="VGD38_14130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729212.1"
                     /translation="MVTSEAPRAFNREMYHDHPENVFYGTDDGAQDGSLSEFGEFKAH
                     YESVAPERRENIHMISVVGGLYGLNLIPLWKPKRLTIFDINPTAVTYFKLIHSVFTTS
                     RDPQHFLQRLTDGDYEAQTEREQFVRENICLKQRGALPRERGSTKRPYEQSWQYAFEH
                     FDLTKKLLLETPLEIRTEPMESDGFRSWIREQNNLWIYSSNITEFHYFDLDFADTSNV
                     VLIQIIFPAKPQLLDLAPLAGGPVKVHYEIPLRAERI"
     gene            1042..1443
                     /locus_tag="VGD38_14135"
     CDS             1042..1443
                     /locus_tag="VGD38_14135"
                     /inference="COORDINATES: protein motif:HMM:TIGR00004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019239 - deaminase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rid family detoxifying hydrolase"
                     /protein_id="HEY0729213.1"
                     /translation="MVNKTRIKTDDAPPALGTYSQAIRTGDLIFLTGQTGRNPDTLKL
                     EDGLEAQTRRMLSNLEAVLNAAGCTPADIVKVTLLMANIKDFKAIDQIYSAWLPGLGV
                     TPLPARTAFAAAGLPAGALVMMDVVAAFPLE"
     gene            1449..2591
                     /locus_tag="VGD38_14140"
     CDS             1449..2591
                     /locus_tag="VGD38_14140"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0729214.1"
                     /translation="MRITIVIAGLGGGGAERVAVNLANAWSIRGYTSTLLTISQNAIP
                     PAYKVDDGVNLRDIGWPRRTRDYELNAQAAAPIMRGFYANDANILTTDLPMLAALRFA
                     ILKTEPDVVVSFITQTNVRVLSALYESKVPVIMNEVSDARRLYIRDWTMLRERFYRHA
                     AHLVAPDPLIAEWFTAHGIRATSIHNPLERPVTPIPTNRTARKRVITLSRMSAEKRVE
                     WIVRAFAAVAERYPDWDLEIYGNGPQRNFLEHLAEDHAPPGRIRICGFSREAFSVLAG
                     AEIYVSASWIEGFGNSIWEALACGVPVIAIDAGPSIARLVRHEVDGLVVRDDSVRGLT
                     AALERLMKNEDERTRFASNAPDVVERFSMQAALQQWDELLSLFHTR"
     gene            complement(2533..3528)
                     /locus_tag="VGD38_14145"
     CDS             complement(2533..3528)
                     /locus_tag="VGD38_14145"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0729215.1"
                     /translation="MRVLLSSEHRYPAFNEIGSGRHPMSFPSGSGFWIHDLIMKGLVE
                     MGHEVFYLLPNGARGPMPPGATHVTQPVWDADILHTISDRDQALVTEWQARGKPWVTT
                     CHMDMRTRGMVQPQTTDNWIFVSRTLARLHGRTRYVLNGVDPEACIYSETKQDYVMFM
                     SSMDWEMKKGLDIALSLAARYRFRLVVAGTGNNYKRIFRVETLCRQIGAHYVGDVRGQ
                     RKAELLAGAKAFLFPTRVDEAFGLGMAEALMSGTPVICSDKGACPELITPDVGFVCRN
                     DSEYAAALRNVSRISPQVCREKAMREFHYRRMAADYFNEYEKEIAARPTVAAQLA"
     gene            complement(3531..>4019)
                     /locus_tag="VGD38_14150"
     CDS             complement(3531..>4019)
                     /locus_tag="VGD38_14150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729216.1"
                     /translation="LYQADDFPTRWSRKAKLIEGQCADPSIIRFNDMWWMFTCSTPYQ
                     HDTLRLYFADDLTGPWREHPKSPLIRNDKCRARPAGRILQLEDRLIRFAQDSVPLYGS
                     RVRAFDVIELTTTHYVEVENLASPILQPSGEGWNALGMHHVDAHQLRDGTWLACVDGY
                     SR"
BASE COUNT          876 a         1182 c         1133 g          828 t
ORIGIN      
        1 aagatcaact ggtggacatg cgctggccac aaatcggcgc gcccaagtca gcaacctaca
       61 ccggtgatgg attcataacc attcgtcatc gcgacacaga agtggtccaa cagtcgctcc
      121 gccgcatcgc acagctggtc aggattactt acagctcaca ttcacaatcc ccaactcaaa
      181 cctggggaca cagactggaa aatttcaaag agttaaatcg acccgcatgg gatcaagcaa
      241 actgagaggc aggacaaaac tatggtgact tcagaagcgc cgcgcgcatt caaccgcgag
      301 atgtatcacg accatccgga aaacgttttc tatggtactg acgacggcgc ccaggacggt
      361 tcattgagcg agtttggcga attcaaggct cactacgaga gcgtcgcacc cgaacgccgc
      421 gagaacattc acatgatcag cgtcgtcggt ggtctgtatg gtctgaacct gattccgtta
      481 tggaaaccga agcggctaac aatctttgac atcaatccga cggcagtcac ctatttcaaa
      541 ctcattcaca gcgtgttcac caccagccgc gacccgcagc actttctcca gcggcttacc
      601 gacggcgatt acgaagcgca aaccgagcgc gaacagtttg tgcgtgaaaa catttgtctc
      661 aaacaacgcg gcgcgctgcc acgcgagcgc ggctcgacga agcgtccgta cgaacagagc
      721 tggcagtacg ctttcgaaca cttcgatctg acgaagaagc tgcttctcga aacgccgctc
      781 gagattcgta ctgagccgat ggagagtgac ggcttccgtt cgtggattcg cgaacagaac
      841 aacctgtgga tctacagttc gaacatcacc gagtttcact acttcgatct ggattttgcc
      901 gacacgtcga atgtggtgct gatacagatc atttttccgg cgaagccaca gttgctcgac
      961 ctcgcgccgc tcgccggtgg tccagtgaaa gtccattacg agatcccgct cagggcggag
     1021 cgcatttgag ggagcgagca gatggtcaac aaaacacgaa tcaagacgga tgacgcgccg
     1081 ccggctttgg gcacttactc gcaagcgatc cgcaccggcg atctcatttt tctaaccggt
     1141 caaaccggcc gcaaccctga cacgctgaaa ctcgaagacg gactcgaagc gcaaacgcgg
     1201 cgcatgctgt cgaacctcga agcagtgctc aacgccgctg gttgcacgcc tgccgacatc
     1261 gtgaaagtca cgctgctgat ggcgaatatc aaagacttca aagccatcga tcagatctac
     1321 tcggcgtggt tgcccggtct cggcgtcacg ccactgccgg cgcgaacggc gtttgccgcc
     1381 gcggggcttc cggcgggcgc gctcgtgatg atggacgtcg tcgccgcgtt tccgctcgaa
     1441 tgaagtaaat gcgaatcacc attgtcattg cgggactcgg cggcggcggt gctgagcgcg
     1501 tcgccgtcaa tctcgcgaat gcatggtcca tacgtggtta cacctccacg ctcctcacca
     1561 tttcacaaaa cgcaattcct ccggcttaca aagtcgacga cggtgtgaac ctgcgcgaca
     1621 tcggttggcc gcgccggact cgcgactacg aattgaacgc ccaggccgcc gcgccgatca
     1681 tgcgcgggtt ttacgccaac gatgcgaaca ttctcacgac cgatctgccg atgctggcag
     1741 cgcttcgttt cgcgattctg aagactgaac cagacgtcgt cgtttccttc atcacgcaaa
     1801 caaacgttcg tgtactgtcg gcactctacg aatcgaaagt gcccgtgatc atgaacgaag
     1861 tcagcgatgc ccggcgcctt tacatccgag attggaccat gctccgcgag aggttttatc
     1921 gccacgccgc gcatttggtg gcgcccgatc cgttgattgc tgaatggttc accgcccatg
     1981 gcataagagc aacctcaatc cataaccccc tcgaacgacc cgtcaccccg atccctacga
     2041 atcgcaccgc tcgcaagcgc gtcatcaccc tgtcgaggat gtcggccgag aagcgcgtcg
     2101 agtggatcgt gcgcgctttc gccgcggtag cggaacgtta tcccgattgg gacctcgaga
     2161 tttacggcaa tggaccacaa cgcaactttc tcgaacacct cgccgaagat cacgcgccac
     2221 cgggccgcat caggatttgc ggtttctcac gcgaagcatt cagcgtgctc gcgggcgctg
     2281 aaatctacgt ttcggcatcg tggattgaag gttttggaaa ttcgatttgg gaagcgttgg
     2341 cctgcggcgt gcccgtgatc gcgatcgacg ccgggccatc aatcgcacgg ctcgtgcgtc
     2401 acgaagtgga tggactcgtc gtcagggatg acagcgttcg gggtcttact gccgcgttag
     2461 aacgtttgat gaagaatgaa gacgaacgaa cgaggtttgc gtcgaatgcg ccggatgtcg
     2521 tcgaacgttt ttctatgcaa gctgcgctgc aacagtggga cgagctgcta tctctttttc
     2581 atactcgttg aaatagtccg ccgccattcg tcgataatga aactcacgca tcgctttctc
     2641 gcggcacacc tgcggcgaga tgcgagacac gttacgcaac gccgcggcgt attcgctgtc
     2701 gttgcggcac acaaagccga cgtcgggcgt gatcaactcc ggacacgcgc ccttgtcact
     2761 acagatcacc ggtgttcccg acatcaacgc ttccgccatt cccaaaccaa acgcttcatc
     2821 gactcgcgtc gggaacagaa acgccttcgc gcctgcaagt aactccgctt tcctttggcc
     2881 gcgcacgtcg ccgacgtagt gagcgccgat ttggcggcac agagtctcga ctctgaagat
     2941 gcgcttgtag ttgttgcccg tgccggccac gacgaggcgg aaacgatacc gcgcggcgag
     3001 tgacaacgcg atgtcgaggc ctttcttcat ctcccaatcc atcgacgaca tgaacatgac
     3061 gtaatcttgt ttggtttccg agtagatgca ggcttccgga tcgacgccgt tcaaaacgta
     3121 tcgtgtgcga ccgtgcagcc gcgcgagcgt gcgcgacacg aagatccagt tgtcggttgt
     3181 ttgtggttgg accatgccgc gcgtgcgcat gtccatgtga caggtcgtga cccacggctt
     3241 tccacgcgcc tgccattcgg tcacgagcgc ctgatcgcga tcggagatcg tgtgcaggat
     3301 gtcagcgtcc caaacgggtt gcgtgacgtg tgtcgcaccc ggcggcattg gtccgcgtgc
     3361 gccgttcggc agcagataga acacctcgtg gcccatctcg acgaggccct tcatgatcag
     3421 atcgtgaatc cagaaaccgg agccggaagg gaacgacatc ggatgccggc cgctgccgat
     3481 ctcgttgaag gcgggataac gatgttcgga tgagagcagt actcgcataa ctatctgctg
     3541 tatccatcaa cacaggcgag ccaggtgccg tcgcgtagct ggtgcgcgtc gacgtgatgc
     3601 atgccgagcg cgttccagcc ctcgccgctt ggttgcaaga ttggactcgc aaggttttca
     3661 acttcgacgt agtgcgtggt cgtgagttcg atgacgtcaa aggccctgac gcgcgaaccg
     3721 taaagcggca cgctatcctg tgcgaagcga atcaaccggt cttcgagctg caggattctg
     3781 cctgccggac gtgcgcggca cttgtcgttt cggatgagcg ggctcttggg atgttcgcgc
     3841 catggtccag tgagatcgtc agcgaagtaa agccggagcg tgtcgtgctg gtacggcgtg
     3901 gaacaggtaa acatccacca catgtcgttg aagcgaatga tagatggatc ggcgcattgg
     3961 ccctcgatta attttgcctt gcgagaccag cgcgtcggaa agtcgtcggc ttggtacag
//
LOCUS       DASWTX010000936         2282 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_343446, whole genome shotgun sequence.
ACCESSION   DASWTX010000936 DASWTX010000000
VERSION     DASWTX010000936.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2282
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343446"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..222
                     /locus_tag="VGD38_14155"
     CDS             <1..222
                     /locus_tag="VGD38_14155"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY0729217.1"
                     /translation="YRRRGYGALLLGRVLDEARRKHATTAFLEVRSGNSAAQSLYQKC
                     GFKPIARRANYYSDPPEDAVVMSLDLRSK"
     gene            376..618
                     /locus_tag="VGD38_14160"
     CDS             376..618
                     /locus_tag="VGD38_14160"
                     /inference="COORDINATES: protein motif:HMM:NF016231.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF465 domain-containing protein"
                     /protein_id="HEY0729218.1"
                     /translation="MDIATTDSLKEELINRDPEFRELAREHHKYEERLSELSALSYPS
                     DEEQLEEITLKKKKLALKDQMYSIMLQYQKSQSLSH"
     gene            710..1324
                     /locus_tag="VGD38_14165"
     CDS             710..1324
                     /locus_tag="VGD38_14165"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: protein motif:HMM:NF003678.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEY0729219.1"
                     /translation="MSIVRDSIPYIVVPLVLSVVATLFGLWYVGLLFALLALFMAFFF
                     RDPYRVPPNDADVVVSPADGRVTRIESPGDANGPTLISIFLSPFDVHINRSPIRGRVV
                     DVVYSPGKFLMATKEEASLVNEQNALTIQGEKITVVCKQIAGILARRVVCWKRKGDQL
                     KLGERFGLIKFSSRTDVLLPANVKVTVSEGDRVRGGITVIGRIS"
     gene            1327..2241
                     /locus_tag="VGD38_14170"
     CDS             1327..2241
                     /locus_tag="VGD38_14170"
                     /inference="COORDINATES: protein motif:HMM:NF013250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylcholine/phosphatidylserine synthase"
                     /protein_id="HEY0729220.1"
                     /translation="MEHDDHEAPNPPRRGLRKGLYLIPSIFTAANIGMGFFSVMASLR
                     GFQILGSANPDIAAAGAHFDSAAVAIGWALLFDMLDGRIARLTKTTTEIGIQLDSIAD
                     VVTFGIAPAVLAYVWGYGASLTEGSDLHRLAWFLSFMYLLCGAFRLARFNVQSSRPRI
                     LAEGTPKVDKKNFVGLPIPVAGGLIAALVHFSPAPLTYFGPERARIYSGLLMVLVGLL
                     SLMMVSTLRFSSFKTVGTRVRSMRTIILALSVGMLIFLYSRYVLLAIVVTYILHGLVM
                     RVAAVFWRRGESAEAKIEPNPVGRSSGH"
BASE COUNT          468 a          566 c          683 g          565 t
ORIGIN      
        1 tatcggcgcc gaggatacgg cgctttgctg ctgggacgcg tgctcgatga agcgcgcaga
       61 aaacacgcaa ctacggcttt tctcgaggtt cgcagtggaa attccgcggc gcaatcgctg
      121 tatcagaaat gtggtttcaa accgattgcg cggcgtgcaa attattattc cgacccgccc
      181 gaggatgcgg tcgtgatgag cctggatctt cgttcgaaat aacacatgcg aggcaaatta
      241 cccgcttgca ctgagggtgt cgatgggcta acatttttgc cgtgcgagat aatcttaagg
      301 gaggttcaag acccagttta cctccatacc agcctgccca ctccatctgt ctaactgaaa
      361 ggagaaatgc acgaaatgga catcgcaacc acggatagtt tgaaggaaga gttgataaac
      421 cgcgacccgg aattccgaga attggcccgg gaacatcaca aatacgagga acgtctcagc
      481 gaactatcag ctcttagcta tccgagcgac gaagaacaac tggaggagat cacgctcaag
      541 aagaagaaac tcgctctcaa agatcagatg tattcaatca tgttgcaata ccagaaatca
      601 cagagcttga gtcactgaag ctgcccgttg gcagtttctc cgaaagtttt gaaggggacg
      661 tggaaccaaa agtacgcgtc ccttttgatg taaatagcag aaaacggttt tgagtatagt
      721 tcgagacagt attccttata tcgttgtgcc gctcgtgttg agtgtggtgg cgacgctctt
      781 tgggttgtgg tacgtcggtt tgttgttcgc cctactggcg ctgttcatgg cgttcttctt
      841 tcgcgatccg tatcgcgttc cgccgaacga tgcggacgtg gtggtttcgc ctgctgatgg
      901 acgcgttacg cggatcgaat cgccgggcga tgcgaatggt ccgactttga tcagtatttt
      961 tctgtcgccg tttgacgtgc acatcaatcg gtcgccgata cggggcaggg tcgtcgacgt
     1021 tgtttactcg cccggaaagt ttctgatggc cactaaagaa gaggccagtc ttgtgaacga
     1081 gcagaacgcg ctcacgatcc agggtgaaaa gatcacggtc gtgtgcaaac agattgccgg
     1141 catcctcgcg cggcgtgtgg tttgttggaa aagaaagggc gatcaactta aactcggcga
     1201 acgtttcggc ctgatcaagt tcagttctcg cactgacgtg ctgttgcccg cgaacgtgaa
     1261 ggtcactgtt tcagaaggcg atcgcgtgcg cggcggcatc accgtaattg ggaggatttc
     1321 ctgactatgg aacacgacga tcacgaggcg ccgaatcctc cacggcgcgg cttgcgcaaa
     1381 gggctctacc tgattccgtc catattcacc gcggccaaca tcggcatggg tttcttctcg
     1441 gtgatggcgt cgttgcgcgg ttttcagatc ctcggcagcg cgaatccgga catagcggcc
     1501 gcgggtgcgc attttgacag tgcggcggtg gcgatcggtt gggcgttgtt gtttgacatg
     1561 ctcgacggac ggatcgcgcg tttgacgaag acaactaccg agatcggaat tcaactcgac
     1621 tcgatcgccg atgtggtgac gtttggtatc gcgcctgcgg tgctggctta tgtttggggt
     1681 tatggggcga gtttgacgga aggcagcgat ctgcaccggc tcgcgtggtt tttgtcgttc
     1741 atgtatttgc tgtgtggcgc gtttcgactg gcgcgtttca acgtgcagtc atcgcggcca
     1801 cggattcttg ctgaaggaac gccgaaagtc gataagaaga attttgttgg cttgccgatt
     1861 ccggtcgcgg gcgggttgat cgcggcgctc gttcacttct cgccggcgcc gctcacgtat
     1921 tttggaccgg agcgcgcaag gatctattcg ggactgttga tggtgctcgt cgggctgctg
     1981 agcttgatga tggtgagcac gctgcggttt tcgagtttta agactgtcgg gacgcgtgtt
     2041 cgcagcatgc gcacgatcat tctcgcgctc tcggtgggga tgttgatctt tctctactcg
     2101 cggtacgtgc tgctggcgat cgtagtgact tacatcctgc acggactcgt catgcgtgtc
     2161 gcggcggtgt tttggcgccg cggtgaatca gccgaagcga agatcgaacc caaccccgtc
     2221 ggccgctctt caggtcatta agttttgagt tcagccttta ggctgcctcg ctcagcaagc
     2281 ta
//
LOCUS       DASWTX010000937         2050 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_184709, whole genome shotgun sequence.
ACCESSION   DASWTX010000937 DASWTX010000000
VERSION     DASWTX010000937.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2050)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2050)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2050
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184709"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1200)
                     /locus_tag="VGD38_14175"
     CDS             complement(<1..1200)
                     /locus_tag="VGD38_14175"
                     /inference="COORDINATES: protein motif:HMM:NF025174.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIM-barrel domain-containing protein"
                     /protein_id="HEY0729221.1"
                     /translation="MADRSQAQVLGDPVDVGVDFQRHENVYFIGSRLTSFDTSTGQGT
                     LQWDRYLRNTTLSFNKVDVTFTRGRSTEFPTTEYVEDPVLPFAISFVSPRTIRLRLST
                     RAVPLNEASSIMLAGPVPKDSSWRAEQNDKEIVYTSAHGRVRIVKQPWHVEFYDARGR
                     LLTRTQNIGDPATFITPSPFSFVRRASDLSRRIAATFELQHDEKLFGCGESFTRFNKR
                     GQRVLVSTRDGMGTQSELMYKPIPFFLSNNGYGMFVHTSAPLTFDFGKFYDAHNVIYS
                     GDENLDLFIFLGDPKDILSEYTALTGRSPVPPLWSFGFWMSRITYNSEAQVREVAKQL
                     RAHQVPSDVIHIDTGWFETDWRSDYRFSSSRFRDPAKMIADLKQQGFHISLWQYTYFT
                     SKNDLWKE"
     gene            complement(1287..>2050)
                     /locus_tag="VGD38_14180"
     CDS             complement(1287..>2050)
                     /locus_tag="VGD38_14180"
                     /inference="COORDINATES: protein motif:HMM:NF014026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEY0729222.1"
                     /translation="EMNVPLDGFRGGDRTEISLPKTQETLLKAVMATGKPVVVVLLSG
                     SALAVNWANDNVPAILAAWYPGGEGGTAIADVLFGDYNPAGRLPVTFYKSVDQLPPFT
                     DYSMQGRTYRYFKGEPLYPFGYGLSYTTFGYGNLRFEKRAVAAGEAVKVSVDVTNAGD
                     REGEEVVQLYLTDTQASAPVPIRTLVGFDRISLKPREKRTVTFTIAPRQMSLIDDKGK
                     RVIEPGEFSVSVGGGQQGLSGRFAVSGRMLEVAER"
BASE COUNT          461 a          612 c          548 g          429 t
ORIGIN      
        1 ctctttccac agatcgtttt tgctggtgaa gtaagtgtat tgccagagac tgatgtgaaa
       61 accctgctgc ttcaggtcgg cgatcatctt tgccggatcg cggaaacgcg aacttgaaaa
      121 acgataatcg ctgcgccaat cagtttcgaa ccagccggtg tcgatgtgaa ttacatccga
      181 cggcacctgg tgcgctcgca actgtttcgc gacctcacgc acctgtgctt cggagttgta
      241 agtgatgcgg ctcatccaga atccgaacga ccaaagcggt ggcaccgggc tgcgacccgt
      301 caacgccgtg tactcggaaa gaatatcttt cggatcgccg aggaagatga agagatcgag
      361 gttctcgtcg cctgaataga ttacgttgtg cgcgtcgtaa aacttgccga agtcgaacgt
      421 caacggcgcg ctggtgtgaa caaacatccc gtaaccgttg ttgctcaaga agaacgggat
      481 cggcttgtac atcagctcgc tctgcgtccc catgccgtcg cgcgtggaga ccaaaactcg
      541 ctgaccgcgc ttgttgaaac gcgtgaacga ctcgccacaa ccgaaaagct tctcgtcgtg
      601 ctggagttcg aaagtcgccg cgatgcgccg cgagagatcg ctcgcgcgac gcacgaaaga
      661 aaacggactg ggtgttatga acgtcgccgg atcgccgatg ttctgcgtgc gtgtgagcaa
      721 ccgcccgcgc gcatcgtaaa actcaacgtg ccacggctgt ttgacgatcc gcacgcgtcc
      781 gtgcgcgctg gtgtagacga tttccttatc gttctgttcc gcgcgccacg aagagtcttt
      841 cggcactggt ccagccagca ttattgacga ggcctcgttc agtgggaccg cgcgcgtgga
      901 caaacgcagg cggatcgtgc gtgggctcac gaagctgatg gcaaaaggca ggaccggatc
      961 ttcaacgtat tcggtagtgg gaaattccgt gctgcgaccg cgagtaaagg taacgtcgac
     1021 cttattgaac gagagcgttg tgttgcgcag gtaacgatcc cattgcaacg tgccctgacc
     1081 cgtggacgtg tcgaaggaag tgaggcggct gccgatgaag tagacgttct cgtggcgttg
     1141 aaaatcgacg ccgacatcta cgggatcgcc gagcacctgg gcttgagatc tatcagccac
     1201 aaagaggcac aagaagcaca aaaggcacaa gagagttaag aaagctttct tgtacttctt
     1261 atacttcttg tgcttcttcg tggctttcat cgctcggcga cttccagcat tctcccggaa
     1321 actgcgaacc ggccactcaa tccttgttgg ccaccaccga cgctgaccga gaactctccc
     1381 ggctcaatga cgcgcttgcc cttatcgtcg atcagcgaca tctgccgcgg cgcgatcgta
     1441 aacgtcaccg tacgcttctc acgcggcttc agcgaaatac gatcgaaacc aaccaacgtg
     1501 cgaatcggca cgggcgctga tgcctgggtg tcggtgagat acaactggac cacctcttca
     1561 ccttccctgt cgccggcgtt cgtcacgtca acactgactt tcaccgcttc acccgccgct
     1621 accgcacgct tctcaaaccg cagattgccg taaccaaacg tcgtgtaact caatccgtag
     1681 ccaaacggat aaagcggctc gcctttgaag tagcgatacg tgcggccctg catgctgtag
     1741 tcggtaaacg gcggcaactg gtccaccgat ttataaaacg tcaccggcaa acgcccggca
     1801 gggttgtaat cgccaaacaa cacgtcggca atcgcggttc cgccttcacc acccggatac
     1861 cacgccgcca gaatcgcagg cacgttatcg ttggcccagt tcactgccaa cgcgctgccg
     1921 ctgagcaaca ccacaaccac cggcttgccc gtcgccatca ccgctttcaa caacgtctct
     1981 tgtgttttcg gcaacgagat ctccgttcga tcgccaccac gaaaaccatc gagcggcacg
     2041 ttcatctctt
//
LOCUS       DASWTX010000938         1546 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_386606, whole genome shotgun sequence.
ACCESSION   DASWTX010000938 DASWTX010000000
VERSION     DASWTX010000938.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1546
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386606"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..610
                     /locus_tag="VGD38_14185"
     CDS             <1..610
                     /locus_tag="VGD38_14185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729223.1"
                     /translation="EAFVGSLSMVFLVAAAIAFFGLLVSLLLPERRLRETIAAAAETD
                     IGGEIAQTYAMPTDTGSREQLLRGLAVLADRDVRRRYIASIVARAGVDLSPTAAWLLV
                     QIERERGVAVNELGRRGKFDAASLKAAAAELLDKSLIAASSVPDVFKLTEAGCETYNR
                     LAASRREHLAELWPEWSPQKREEVAEILRRLARELIPEAEAA"
     gene            738..>1546
                     /locus_tag="VGD38_14190"
     CDS             738..>1546
                     /locus_tag="VGD38_14190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729224.1"
                     /translation="MKTVIIAMSIALSLLSLPHAAYSQKTGEAQILIVDANKHLLLKF
                     TNPDPNKQRCSFLVGNRLTKDREEAFVIPVAHLHHRFRLFASRGAVLTVGGPEVDGIS
                     LPENGWLYITRSRIIFVVKEGDQSHAFDVPRTDLKDKSVTALQADAPSGIQINLKERL
                     VASNSREQKFVFLMTGDSNCQEFLEPEPFTKFIKRTITDFNGALAEFKQLTASLKQSG
                     KIAQTHMAFLPSGNPGDPPGSAGESQTTEETFNALNLPRTSSDSAIPDDEPG"
BASE COUNT          341 a          429 c          439 g          337 t
ORIGIN      
        1 cgaagcgttc gtcggttcgc tcagcatggt gtttcttgtc gctgcggcca tcgcgttctt
       61 cggactgctc gtatcgttgt tgctgcccga gcgtcgattg cgagaaacga tcgccgccgc
      121 agcggagacc gacatcggtg gtgagatcgc acaaacgtat gcgatgccga ccgacacggg
      181 ctcgcgcgag cagttattgc gcgggttagc cgtgcttgca gatcgagacg tgcgacgccg
      241 ttacatcgcg tcgatcgttg cgcgtgcggg tgtcgatttg agtccgacgg cggcgtggct
      301 gctggtccag atcgaacgtg agcgcggagt cgccgttaac gaactggggc gacgaggaaa
      361 attcgacgcc gcgagtttga aagccgcggc tgcggagctg ttggacaagt cgttgattgc
      421 ggcaagctcg gttcccgatg tgttcaagct gacggaagcg ggctgtgaga cgtacaaccg
      481 tctggccgcg tcgcgtcgcg aacacctcgc ggagttatgg cccgagtggt cgccgcagaa
      541 acgcgaagaa gtagccgaaa tcctgcgccg cctcgcgcgc gagttgatcc ccgaagccga
      601 agctgcctga agtctgacta atcggatcga atcgttcaag acggcgctca gccctttgtt
      661 gacgccgtta gagttcgctt gcataatctc cgggcctgac gttctcacat tcactcaatc
      721 tcaggatcaa attgaaaatg aaaactgtaa taatagcgat gtcaatcgcg ctctctcttc
      781 tcagcctgcc tcatgccgct tactcacaga aaaccggtga ggctcaaatc ctgatcgtgg
      841 atgcgaacaa acacctcctt ctgaaattta ccaatccgga ccctaacaag cagcgttgct
      901 cgttcctggt cggtaacagg ttgacgaagg atcgggaaga ggccttcgtg ataccggtcg
      961 cgcacttaca tcaccgcttt cgcctgtttg cttctcgcgg agctgttctc acggttggtg
     1021 ggcccgaggt cgacgggatc tcgttacccg agaacgggtg gttatacatt acgcggtcgc
     1081 ggatcatctt cgttgtcaaa gagggcgatc agtcacacgc gtttgatgtc ccgcgaacgg
     1141 atctaaaaga taaatcagtc accgctctcc aggcagacgc accgtccggc atacagatca
     1201 atttgaaaga gagactcgta gcttctaaca gcagagagca aaaattcgtg ttccttatga
     1261 ctggcgatag taactgtcag gagtttctgg agccggagcc atttaccaag tttattaaac
     1321 gcacaatcac tgatttcaat ggagcgctgg ctgagtttaa gcaactcacg gcttcgctga
     1381 agcagtccgg gaaaattgcc caaacacaca tggcattctt gccgtccggc aacccgggtg
     1441 atccacccgg tagtgccggc gagtcgcaaa caaccgagga gacattcaac gcattaaatc
     1501 taccgcggac ctcctctgat tccgcgatcc ccgacgacga gcccgg
//
LOCUS       DASWTX010000939         1542 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_11035, whole genome shotgun sequence.
ACCESSION   DASWTX010000939 DASWTX010000000
VERSION     DASWTX010000939.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11035"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..735)
                     /locus_tag="VGD38_14195"
     CDS             complement(<1..735)
                     /locus_tag="VGD38_14195"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: protein motif:HMM:NF006707.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I fructose-bisphosphate aldolase"
                     /protein_id="HEY0729225.1"
                     /translation="MATELKRSDSMDRIAELLGSDASTLLDHTSQTISKDLVQLPGPD
                     FVDRVWGISDRPAGVMRSLQTLFDNGRLRGTGYLSILPVDQGIEHSAGASCAPNPQYF
                     DPENIIKLAIEGGCNAVASTFGVLGAVGRKYAHKIPFIVKINHNELLTLPNKFDQVLF
                     GTVKEAHNLGAVAVGATIYFGSDESTRQITEISDAFAQAHELGMACILWCYLRNSKFK
                     TPEGDMHASADLTGQANHLGVTIQADI"
     gene            919..>1542
                     /locus_tag="VGD38_14200"
     CDS             919..>1542
                     /locus_tag="VGD38_14200"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3857 domain-containing protein"
                     /protein_id="HEY0729226.1"
                     /translation="MKIPPSYYPLIALFVCLLTLVSIATVPAAVPFWEDWKPIDPAEL
                     ALKNPTVEKEADAEGLFWEVRIDDHPDGDLIFNHYIRVKVFTERGRESQSKIDLEYGK
                     LYGTETKIQDIAARTIKPDGSIVELKKADIFERTIAKTSGLKIKARSFAMPSVEPGCI
                     IEYRWREVRVRSNANYLRLQFQRDIPVRRVQYLIKPFNYEGASFASIT"
BASE COUNT          342 a          423 c          426 g          351 t
ORIGIN      
        1 gatgtcggcc tgaatcgtca cgccgagatg attggcctga ccggtgagat ccgcggacgc
       61 gtgcatgtcg ccttcggggg ttttgaactt cgagttccgc aggtagcacc agagaatgca
      121 cgccattccc agttcatgag cctgcgcaaa cgcgtcactg atttccgtga tctgtcttgt
      181 ggattcgtca gaaccgaaat agatggtggc gccaacggcg accgcgccga ggttgtgggc
      241 ctctttcaca gttccaaaca gcacctggtc gaacttgttc ggcagggtca gcagttcgtt
      301 gtgattgatt ttgacgatga acggaatctt gtgcgcgtat ttacgcccga ccgcgccgag
      361 cacgccgaaa gtcgaggcga cggcgttaca accgccttca atcgcgagtt tgattatgtt
      421 ttccgggtca aaatactgcg gatttggcgc acacgaagcg ccggccgagt gttcgatgcc
      481 ctggtccacg ggaagaatcg acaggtagcc ggtgccccgc agtctgccgt tatcaaacag
      541 ggtttgcagt gaacgcatca cgcccgctgg acggtccgaa atgccccaaa cgcgatcgac
      601 aaaatccggc cccggaagtt gcacgagatc ttttgagatc gtttgcgaag tgtggtccaa
      661 aagcgtcgaa gcgtcggatc cgagaagttc ggcgatgcgg tccatcgagt ctgagcgttt
      721 tagttcggta gccatccgga atttttgcct cctggcgctg tgctgcgcgt gtagttcctg
      781 agtatgtgct gaattatacg attcggttga tgaccgagca aacttcggtt aaaatcggct
      841 cccgctccag cggcgtcctc ggtatccttg ctcgcagaag tgaattgtca atcggcgaat
      901 tttagaaagg tccaagaaat gaagatccct ccctcgtact atcccctaat tgccctattt
      961 gtgtgtttgc ttaccctggt ctcgattgcc acagttccgg ccgcagttcc cttttgggaa
     1021 gactggaaac ccatcgaccc agccgaactt gctctgaaaa atcccactgt cgagaaagag
     1081 gctgacgccg aggggctgtt ttgggaagtc agaattgacg accacccgga cggcgacctg
     1141 attttcaacc actacatccg cgtcaaagtc tttactgagc gcggccgcga gtcgcaaagc
     1201 aagatcgacc tcgagtacgg caagctttac ggcaccgaaa ccaagatcca ggacattgcc
     1261 gcccggacca tcaagcccga tggttcgatt gtcgaactca agaaagccga catcttcgaa
     1321 cggaccatcg ccaagacaag tggtctaaaa atcaaggctc gttcgtttgc gatgccgagc
     1381 gtggagccgg gctgcatcat cgagtatcgc tggcgcgaag tgcgcgtgag aagcaatgcc
     1441 aactatcttc gcctccagtt tcagagagac attccggtgc gccgcgttca gtacctgatc
     1501 aagcctttta attacgaagg cgcgagtttc gcttcgatca cc
//
LOCUS       DASWTX010000940         1878 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_206359, whole genome shotgun sequence.
ACCESSION   DASWTX010000940 DASWTX010000000
VERSION     DASWTX010000940.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1878
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206359"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..833)
                     /gene="trpS"
                     /locus_tag="VGD38_14205"
     CDS             complement(<1..833)
                     /gene="trpS"
                     /locus_tag="VGD38_14205"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEY0729227.1"
                     /translation="MTKRIFSGAQPTGNVHLGNYLGALKNWVALQHEYESFFCIVNLH
                     AITVPQDARLLIEKTRDLARIYLAVGINPEASTIFIQSDVPEHAELTWVLNCVARMSE
                     LERMTQYKDKARKQQENVSVGLFDYPVLMAADILLYQTDLVPVGDDQKQHLELTRDLA
                     IRFNRDYGETFKVPDPYIQKLGGRIMSLSDPLKKMSKSDDDPNGCVLLMDDADTVSRK
                     FKRAVTDSGTEIRFDESRPAINNLLEIYHLITGKSQAEVEDHFAGKVYAQLKGDLADA
                     T"
     gene            complement(844..1503)
                     /locus_tag="VGD38_14210"
     CDS             complement(844..1503)
                     /locus_tag="VGD38_14210"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEY0729228.1"
                     /translation="MNPEELIPRLVIYMVVLLLAISAHEAAHAWMSYKFGDDTARLLG
                     RITLNPVAHTDPIGTLLIPIVGFIVAAMGGRFFLIGWGKPTPVNPLRWRRKDLANVMV
                     SIAGILANLLIATIAFVIIKVLLRSGWVFTMSEGLREPVMIFLELLLTMNISLAVFNL
                     LPFPPLDGSKVLETFLPESAQPALAALEQYGYIILMVLMYTGFFGAIIGPILDLVYSL
                     L"
     gene            complement(1569..>1878)
                     /locus_tag="VGD38_14215"
     CDS             complement(1569..>1878)
                     /locus_tag="VGD38_14215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729229.1"
                     /translation="TVTSYDCVWRINADGETDVFFKGLGRPQGLAFDTAGNLYVAASL
                     RGRRGIVRISPDGSEAKVVVAGVNLIGLAFSSAGEMAVVSIDSVYSLPAQTRGTLLTG
                     "
BASE COUNT          441 a          545 c          500 g          392 t
ORIGIN      
        1 atggtcgcgt cggccaggtc gcccttcaac tgcgcgtaaa ctttgcctgc aaaatggtct
       61 tcgacttcag cctgactctt ccccgtgatc aggtgataga tctcgagcag gttgttgatc
      121 gcgggacgcg attcgtcgaa acgaatctcc gtgccggagt cagtcacggc gcgtttgaac
      181 ttgcgcgaca ccgtgtccgc gtcgtccatc agcaacacgc agccgttcgg atcgtcgtct
      241 gacttcgaca tcttcttcaa cggatcggac agcgacatga tccgcccgcc gagtttctga
      301 atgtacggat cgggaacctt gaacgtctcg ccgtagtcgc ggttgaaacg aatcgcgaga
      361 tcgcgcgtca gttcgaggtg ctgtttttga tcgtcgccga caggcacgag gtccgtctgg
      421 taaagcagga tgtcggcggc catcaaaacc ggataatcaa acaggccgac cgaaacgttc
      481 tcctgctgct tgcgcgcctt gtccttgtac tgcgtcatgc gctcgagctc ggacatacgc
      541 gcgacgcagt tcagcaccca cgtgagctca gcgtgttccg gcacgtctga ctggatgaag
      601 atcgtcgaag cctctggatt aattcccact gcgagataaa tacgcgcgag gtcacgcgtc
      661 ttttcaatca gcagcctggc atcctgcggc accgtgatcg cgtgcaggtt cacgatgcag
      721 aagaaactct cgtactcgtg ctgcagtgcc acccaattct ttaacgcgcc gagataattg
      781 ccgaggtgaa cgttgccggt gggttgagcg ccgctgaaga ttcgtttagt catctgttac
      841 aaactacaag agtgaataca cgagatcgag aatgggaccg attatcgcgc cgaagaaccc
      901 cgtgtacatc agcaccatca gaattatgta tccgtattgc tcgagcgcag ccagagccgg
      961 ctgtgcgctt tccgggagaa aagtctccag caccttgctg ccgtccagcg gagggaacgg
     1021 gagcaggttg aacactgcaa gcgagatgtt catcgtcagg agaagctcca gaaagatcat
     1081 gaccggttcg cgaagtccct cggacatggt gaacacccag ccactgcgaa gcaatacttt
     1141 gataatgaca aacgcgatgg tggctattaa caagtttgcg aggatgccgg caatcgacac
     1201 catgacgttg gccagatcct tccgccgcca acgcagcgga ttcaccggtg tcggtttacc
     1261 ccaaccgatc aaaaagaacc tgccacccat ggccgccaca atgaacccca caatcgggat
     1321 cagcagcgtg ccgatgggat cggtgtgcgc taccggattg agagtaatac ggcccagcag
     1381 ccgcgctgtg tcgtcgccaa acttgtaaga catccaggcg tgcgctgctt cgtgggctga
     1441 gatcgcgagc agcaacacca ccatgtaaat aacgagtcga ggaattaatt cttctggatt
     1501 caattgcgca ctcgcgtttc taaaacttgc agggcggaaa cagtttggtt caacttagca
     1561 ttctcttgtt agcccgtcaa aagcgtgccc ctggtctgcg ccggcaggct gtaaaccgaa
     1621 tcgattgaga ccaccgccat ttcaccggca gaactaaaag ccaacccgat cagattcact
     1681 ccggcaacaa cgactttcgc ttcactgccg tccggagaaa tacgaacaat gccgcgccgc
     1741 ccacgcaatg aagcagcgac gtacaggttc cccgcggtat caaaggcgag cccctgcggc
     1801 cgccccaagc ctttgaagaa aacatccgtc tcgccgtcag cattgattcg ccaaacacaa
     1861 tcgtaactcg tgactgtt
//
LOCUS       DASWTX010000941         1597 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_230056, whole genome shotgun sequence.
ACCESSION   DASWTX010000941 DASWTX010000000
VERSION     DASWTX010000941.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230056"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..111
                     /locus_tag="VGD38_14220"
                     /pseudo
     CDS             1..111
                     /locus_tag="VGD38_14220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012077405.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
     gene            178..765
                     /locus_tag="VGD38_14225"
     CDS             178..765
                     /locus_tag="VGD38_14225"
                     /inference="COORDINATES: protein motif:HMM:NF020906.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1990 domain-containing protein"
                     /protein_id="HEY0729230.1"
                     /translation="MFTLTEPSADDVTRFITSQRNSPFTYADVGATRFDPAEAPRGFT
                     LDHNRVQLGFGNEVYERAVMALKQWRQFDLGWVTAVPPGVKLEKDAIVAVKARAFGTW
                     SLNACRIVYLIDEQVLGRRSGFAYGTLQDHVERGEERFTIEMDPTDDSVWYDILAFSR
                     PRHPLVRASFPLARMLQKRFAQDSMRVMKSIVNPV"
     gene            complement(752..>1597)
                     /locus_tag="VGD38_14230"
     CDS             complement(752..>1597)
                     /locus_tag="VGD38_14230"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY0729231.1"
                     /translation="QTERLIGGTKGSHVVVAPFEGAPDGAVYLEAVSDRRPFFVIPWN
                     GHYLIGTTDVRFEGDPGEVRAEKWEVEYLLNETNRAFPVAKLSNESVLYTYSGVRPLA
                     YTKNEDEQSITRRHFLREHPQFPNLISVVGGKLTTYRNLAEECVDWVFRKLNRPSPPC
                     ETARVPLPGATGETPAKVCERWRRVYGSRAKEVAELAKRFDGEDTLAAEVVFSFEQEF
                     AKSLADCFLRRTMIGLNANAGLDEIERAAEIGKKFLGWPQERAKREVKGYREEISNRR
                     DFKPD"
BASE COUNT          336 a          510 c          402 g          349 t
ORIGIN      
        1 ttgcgtcaca gctttgcgac gcacctgttg caacacggcg ctgattcacg ttctgtgcag
       61 gcgctgttgg gccacagcga catttcaacc acgcagatct acacgcacat cactgacgta
      121 cacttgcgca ccgcatacga ccggcatcat ccccgcgcgc gcaagaacag ttaaccaatg
      181 ttcacgctga ccgaaccttc cgccgacgac gttacacgat ttatcacgag tcaacggaac
      241 tcacctttca cgtatgcgga tgtcggagcc acgcgattcg atcctgccga agcgcctcgc
      301 ggcttcacgc tcgatcacaa tcgcgttcaa ctgggattcg gaaacgaggt ttacgagcgc
      361 gcggtgatgg cgttgaagca gtggcggcaa ttcgatctcg gctgggtgac ggctgtgccg
      421 ccgggtgtaa agcttgaaaa ggatgcgatc gtggcggtca aagcgcgggc gttcggcacg
      481 tggtcactca acgcctgccg gatagtctat ttgattgacg agcaggtgct gggcaggcgt
      541 tcgggttttg cgtatggcac gttgcaggat cacgttgagc ggggcgaaga gcgttttacg
      601 atcgagatgg atccgactga cgacagcgtc tggtacgaca tcctggcatt ttcgcggccg
      661 cggcatccgc tcgttcgcgc aagcttcccg ctcgcgcgca tgttgcagaa gcggttcgct
      721 caagattcaa tgcgcgttat gaaatcaatc gtcaatccgg tttaaaatct cttcggtttg
      781 agatctcctc tctgtaccct ttaacttcac gcttcgctcg ctcttgcggc caacctaaaa
      841 acttctttcc gatctccgcc gcgcgttcaa tctcgtcgag acccgcgttg gcgttaagac
      901 cgatcatcgt cctgcgcaag aaacaatccg ccaagctctt cgcaaactcc tgctcgaaac
      961 tgaaaaccac ttcagccgcc agcgtatctt cgccgtcgaa tcttttcgcc agctccgcca
     1021 cttccttcgc tctcgaaccg tacacacgtc tccaccgctc gcacaccttc gccggcgttt
     1081 cgcccgttgc accgggcaaa ggaactcgtg cggtttcaca aggcggagac ggccggttca
     1141 acttgcgaaa gacccagtca acgcactctt ccgcaaggtt gcgatacgtc gtcagctttc
     1201 caccgacaac cgaaatgagg ttcggaaact gcggatgctc gcgcagaaag tgcctgcgcg
     1261 tgatgctttg ttcgtcctcg ttctttgtat acgccagcgg ccgcacaccg gaataggtgt
     1321 agagcacgct ctcgttactc aatttggcta cgggaaacgc acggttcgtc tcattcagaa
     1381 gatactcaac ctcccacttt tcagcgcgca cctcacccgg atcaccttca aaccgaacgt
     1441 ccgtcgtccc aatcaggtag tgtccattcc acggaataac aaaaaacggg cgcctgtcac
     1501 taaccgcctc caaataaacc gccccatccg gcgccccctc aaacggcgcc accaccacat
     1561 gactcccctt cgtgccgcca atgagccgct cggtctg
//
LOCUS       DASWTX010000942         2755 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_249934, whole genome shotgun sequence.
ACCESSION   DASWTX010000942 DASWTX010000000
VERSION     DASWTX010000942.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2755)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2755)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2755
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249934"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..675
                     /locus_tag="VGD38_14235"
     CDS             <1..675
                     /locus_tag="VGD38_14235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729232.1"
                     /translation="GKFSTTPLDQSTNGNGMFGVATSSSARGMVAWRNLNNSNPQVAK
                     RRQSTQRILSSTTTFTEADFVSFDSDGFTLNFPTAGGNADIFYYLALRGPQVKVSSFN
                     QATTTGNQSITGAGFTPKAAIMMSANDVSGNNDAAQAHARASFGWATGTSERASFWIG
                     ETDNVSPTVAQRNLDRTKLIKLMTEGTPTVNAAADHVSFDSDGQTINWTTADGTARQI
                     IVFWIG"
     gene            795..1004
                     /locus_tag="VGD38_14240"
     CDS             795..1004
                     /locus_tag="VGD38_14240"
                     /inference="COORDINATES: protein motif:HMM:NF027249.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HEY0729233.1"
                     /translation="MTRRVLLYPGEDGFIVAEVPSLPGCISQGKTRDEALANVREAIS
                     LHEEVLRERGEPVPEDRVELVEVAA"
     gene            complement(1352..2152)
                     /locus_tag="VGD38_14245"
     CDS             complement(1352..2152)
                     /locus_tag="VGD38_14245"
                     /inference="COORDINATES: protein motif:HMM:NF025013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4142 domain-containing protein"
                     /protein_id="HEY0729234.1"
                     /translation="MTNRQLIKSAHVWAITALLALGLWSIAGKAGILQQNQNQNQNQN
                     QNGNGNGNANGNSNTGNSNRRQNDNRSGNRNTGGAQGSQVAMSSQDRNFVMDAAMGGM
                     MEVELGRLAVQNGASDVVKQFGQRMVDDHTKANQELMSLASSKGMTLPTALDEKHQKE
                     VTKLSGLTGAEFDRAYAKRMMNEHQKDVKEFEKQSTRGGDPDLRAFATRTLPTLQEHL
                     QMVRTLPGNEGRGGGNSNGNSNRGGNSNRNSNGNSNGNSNNNGNSNRP"
     gene            complement(2184..>2755)
                     /locus_tag="VGD38_14250"
     CDS             complement(2184..>2755)
                     /locus_tag="VGD38_14250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729235.1"
                     /translation="LLIFGSTVLYPLTNVSAQDALAGRTITGTVYFVGGRRPGRTLPF
                     RLIINRISNADEIQQLNAALQSGGQDELMRALSRMNAGRIEVGTGVGVPANLILRTDD
                     GEGRTKLVVLYQRELRFGELRYGTRSSDYRFGYAELYVGRGANEGMLIPAARVRLRDG
                     NTWEVEDFGTFPARLMGLQVRGGGRSTVG"
BASE COUNT          551 a          775 c          787 g          642 t
ORIGIN      
        1 gggaagtttt ccaccacgcc gctcgatcaa tcgacgaacg gcaatggaat gtttggtgtt
       61 gcgaccagct cgagtgcacg cggcatggtg gcctggcgca atctgaacaa cagcaatccg
      121 caggtggcta aacggcggca atcgacgcaa cgcattctga gttcgacgac gacgttcacc
      181 gaagcggact tcgtctcgtt tgactcggat gggtttacgt tgaatttccc gaccgcggga
      241 ggcaatgccg acatctttta ctacctggcg ttgcgtgggc cgcaagtgaa agtgagttcg
      301 ttcaaccaag cgacgacgac cggcaatcaa tcgatcacgg gtgcgggctt cacgcccaag
      361 gccgcgatca tgatgtcggc caacgacgtt tcggggaaca acgatgcggc gcaggcacac
      421 gctcgtgcca gctttggctg ggccaccgga acgagtgagc gtgcgagctt ctggatcgga
      481 gagactgaca acgtcagccc gacggtagcg cagcgcaatc tggatcgcac gaagttgata
      541 aagctaatga cggaaggcac gccgaccgtc aacgccgccg cggatcacgt aagcttcgat
      601 tcggacggcc aaaccatcaa ctggaccacc gccgacggca cggcgcgaca gatcatcgtg
      661 ttctggatcg ggtgagggaa ctaatacgat cctttgatca aacggacagc accgctcccg
      721 cggcgctgtc cgtttgccgg ccaaaagcag agtggatgtt ggcctatgta ttgaatgcgg
      781 ttacaatcgg atacatgaca cgacgagttc tactttatcc aggcgaagac ggtttcattg
      841 ttgcggaggt tccgagtctt cctggctgta ttagccaggg caagacgcgt gacgaggcgc
      901 tagcgaacgt ccgcgaagca atctccttgc atgaagaagt gctgcgtgag cgcggcgagc
      961 cggtgccgga ggatcgagtg gagctggtcg aggttgcagc gtgagtagat tgccggtgat
     1021 ttcaggcgct gagtgtgtca aagcactcgg caaagttggt tttcaggtat atcgacaacg
     1081 cggcagtcat atagttctcg ttcgcaagtc tccatccgca cagaccacca ttccaaatca
     1141 taaagagttg gaccgaggaa cgctacgcgc aatcatccgg caaagcggtc ttactgttga
     1201 agaatttgcg gcgctacttt gagaacggtt ggaccaaatc ctaggacatc acacgctggt
     1261 gttatcacca gacaacgagg cgcacgcgaa ccgccgaact aaatctcggt tttcgcgtgc
     1321 gccagattgt tagaaacaac gcggcctgaa actacgggcg attcgagttg ccgttgttgt
     1381 tactgtttcc gttgctgttt ccgttgctat tgcggttgct gttaccgcct ctgttgctgt
     1441 taccgttact gtttccgccg ccgcggcctt cgttacccgg taacgttctc accatctgaa
     1501 gatgttcctg aagcgttggt aaagtcctgg tagcgaaagc gcgcagatcg ggatcgccgc
     1561 ctctcgtgct ctgcttttca aactctttaa cgtccttctg gtgctcgttc atcatccgct
     1621 tggcgtacgc gcggtcaaac tctgctcccg tcagtccgga aagcttcgtc acttccttct
     1681 ggtgcttctc atcgagagcg gtcggcaacg tcattccttt gctcgacgcc aacgacatca
     1741 gttcctggtt cgctttggtg tgatcgtcca ccatccgctg gccgaactgt ttcaccacat
     1801 cgctcgcgcc gttttgcacg gcgaggcggc cgagttcgac ttccatcatg ccgcccatcg
     1861 cagcgtccat gacgaaattg cggtcttgtg agctcatggc cacctgcgag ccttgggcgc
     1921 cgccggtatt gcgattaccg gatctgttgt cgttctgtct tctgtttgag ttgcccgtgt
     1981 tgctgttgcc gttggcgtta ccgttgccat tgccgttctg gttctggttt tggttttggt
     2041 tctgattctg ctgaaggatt ccggccttgc cggcaatgct ccagagcccg agcgcgagca
     2101 gcgcggttat tgcccaaacg tgagcagact taattaactg gcgattggtc attacatgcc
     2161 ctccttgtta gatcgaaaga ccgttagccc acagtgctgc gcccaccgcc gcgcacctgt
     2221 agacccatca gtcttgcggg aaaagttccg aaatcttcta cttcccaggt gtttccgtcg
     2281 cgcagacgta cacgcgcagc cggtatcaac atgccttcgt ttgctccgcg gccgacgtac
     2341 agttccgcgt aaccgaacct gtagtcgctc gaacgcgtgc cgtaacgcaa ttcgccgaag
     2401 cggagttctc gttgatagag caccaccagc ttcgtcctgc cttcgccgtc gtccgtacgg
     2461 aggattaaat tggccggcac gccgacaccc gtaccgactt cgatgcgtcc agcgttcatg
     2521 cgtgacagtg ctcgcatgag ttcgtcctgt ccaccggatt gcagcgcggc gttgagttgc
     2581 tggatttcgt ccgcgttaga gattcgattg atgatcagtc tgaacggcag tgtgcggccg
     2641 ggtctgcggc cgccgacaaa gtagacggta ccggtgatcg tgcgaccggc gagcgcgtct
     2701 tgcgcagaaa cattggtcag tggataaaga actgtgctcc caaaaattag cagcg
//
LOCUS       DASWTX010000943         1515 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_184757, whole genome shotgun sequence.
ACCESSION   DASWTX010000943 DASWTX010000000
VERSION     DASWTX010000943.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1515
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184757"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..830
                     /locus_tag="VGD38_14255"
     CDS             <1..830
                     /locus_tag="VGD38_14255"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HEY0729236.1"
                     /translation="AASTDLPIDEIKRLNIEKHLTFIEQAAEQGVQIVCMQEIFTTPY
                     FCAEQQTRWYEAVERIPDGPTVRLMQEVAKEHGMVIIVPIYEEEITGVYYNTAAVIDA
                     DGTYLGKYRKNHIPHVNPGFWEKFYFRPGNLGYPCFDTAFARVGVYICYDRHFPEGAR
                     ALGLNGAEIVFNPSATVAGLSEYLWRLEQPAHAVANGYFIGAINRVGHEQPWDIGEFY
                     GQSYFCDPRGQFLAEAPRDKDALVVADLDLDKIREVRNTWQFYRDRRPDTYGALVAD"
     gene            847..>1515
                     /locus_tag="VGD38_14260"
     CDS             847..>1515
                     /locus_tag="VGD38_14260"
                     /inference="COORDINATES: protein motif:HMM:NF013355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HEY0729237.1"
                     /translation="MDLSITVNGMKFPNPFVLGSGPPGTNARVLAKSFDAGWGGAVAK
                     TVSLESAKVVNVVPRYGKLRSRRTGEVIGFENIELISDRPIDVWLDEFRQVKKEYPNH
                     VLIASIMEEYEKSRWQELTRMVQDTGVDGFELNFSCPHGMTERKMGSEMGEHPDLTQE
                     VTSWVTEVAKIPVWAKMTPNITNIREPALAAVKGGAVGISAINTILSVIGVDLETLRP
                     MPTVE"
BASE COUNT          318 a          408 c          465 g          324 t
ORIGIN      
        1 acgcagcttc caccgatttg ccaatcgacg agatcaagcg gctgaacatc gagaagcacc
       61 tgacctttat cgagcaggcc gcggagcagg gcgtgcagat agtctgcatg caggagatct
      121 ttacgactcc ttacttctgc gccgaacaac agacgcgctg gtatgaagcg gttgaacgta
      181 tccccgatgg tccaaccgta cggctgatgc aggaagtggc gaaggaacac ggcatggtca
      241 tcatcgtgcc gatctacgaa gaggagatca ccggcgttta ctacaacacc gctgccgtga
      301 tcgatgctga cggcacgtat ctcggcaagt atcggaagaa ccacattccg cacgtcaatc
      361 ccggcttttg ggagaagttt tacttccgtc ccggcaatct cggttatccg tgtttcgaca
      421 cggctttcgc gcgcgtcggc gtttacatct gttacgaccg tcactttccg gaaggcgcgc
      481 gggcgctcgg tttgaacggc gcggagatcg tgttcaatcc ttcggcgact gtggcggggc
      541 tttctgaata tctgtggcgg ctcgagcagc cggcgcacgc ggtggcgaac ggttatttca
      601 tcggcgcgat caatcgtgtg ggacacgagc agccgtggga catcggcgag ttttacgggc
      661 agagctactt ctgcgatccg cgtggacagt ttctcgccga agcaccgcgt gataaggacg
      721 cgctcgtcgt cgcggatctc gatctcgaca agattcgcga ggtacgcaac acgtggcagt
      781 tttatcgtga ccggcgcccg gacacgtacg gcgctttagt ggctgactag ttttacagga
      841 gattttatgg atttatccat caccgtaaat ggcatgaaat tccccaaccc cttcgtctta
      901 ggctcgggtc cgccgggaac taacgcgcgc gtgcttgcga agtcgttcga cgccggttgg
      961 ggcggcgctg tcgccaagac tgtcagtctc gaatccgcga aggtcgtgaa cgtcgtgccg
     1021 cgttacggga aactccgctc gcgccgcact ggtgaagtga tcggttttga aaacatcgag
     1081 ctgatctccg atcggccgat cgatgtttgg ctcgacgagt ttcgccaggt caaaaaagag
     1141 tatccgaacc acgtcctgat cgcgtcgatc atggaagagt atgagaagag ccgctggcag
     1201 gaactcacgc gcatggtcca ggacaccggc gtcgacggtt tcgagctcaa cttctcgtgt
     1261 ccgcacggca tgaccgaacg caagatgggt tcggagatgg gcgagcatcc ggatctgacg
     1321 caggaagtga cgagttgggt gacggaagtc gcgaagattc cggtatgggc caagatgacg
     1381 ccaaacatca ccaacattcg tgaacctgcg ttggcggcgg tgaagggtgg cgccgttggt
     1441 atttcggcca tcaatacgat cttgtcggtg attggagttg acctcgaaac gctgcggccg
     1501 atgccgacgg ttgaa
//
LOCUS       DASWTX010000944         2427 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_409052, whole genome shotgun sequence.
ACCESSION   DASWTX010000944 DASWTX010000000
VERSION     DASWTX010000944.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2427)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2427)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2427
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_409052"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..519)
                     /locus_tag="VGD38_14265"
     CDS             complement(<1..519)
                     /locus_tag="VGD38_14265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729238.1"
                     /translation="MKRVGVLVGREKTFPEAIINRINEKGGGDVVAEYIKLDGVRYDA
                     PPQYDLVIDRISHEVPFYRATLKRMALEGTKIINNPFWWSADDKFFNYSLGKKLGVAI
                     PKTVLLPQKDYIQGIVSESLRNLVFPIDWQGIIDYVGLPAFLKPFDGGGWKNVSKINS
                     LEELWIEFNKTGT"
     gene            702..1532
                     /locus_tag="VGD38_14270"
     CDS             702..1532
                     /locus_tag="VGD38_14270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729239.1"
                     /translation="MPLVGINPAAAALQDPKTQEAKPQETKPQETKQEPRPQPGDAKS
                     QDVKYTAEQIVESVILVYGTRPALEHIRRNGIERGRITRYNPEGNTEETNYERRFVRG
                     ETLNKDKIRLDQKLPTMEYSLIFDDGKLWGIINGAAFTPRQDATADFLSQHRHSIDSL
                     LRYKECGSTISLVGRDQQKGLDLYVVDLTDKEQRKTRYFISARSLRVLWLDYEEGTPG
                     GTPVKYTRKFLDYRVVQQTLVPYRIVLTANGRESQETRVLTITYGVKVSDSIFKSPEA
                     "
     gene            1653..2294
                     /locus_tag="VGD38_14275"
     CDS             1653..2294
                     /locus_tag="VGD38_14275"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0729240.1"
                     /translation="MNTLTTIDELAFAPSLPQETLEDTTSDHALLEATRSGDQDAFAE
                     LVSRYRNQITSYIYRMTSDYDGAVDLAQETFVRVYRARDRYQRSYAFSTYIYRIATNL
                     AISELRKRKRRKLVSLTGFFHSTDGGEAKELNPPDGRPLQDSELVDQERRDAVQRAIG
                     TLPEKYRAPLILRDVDGRSYDEIAAILETSEGTVKSRINRARGFLREKMRAYL"
BASE COUNT          565 a          714 c          664 g          484 t
ORIGIN      
        1 cgtgccggtc ttgttgaact caatccacag ctcttcgagc gagttgatct tcgacacgtt
       61 cttccagccg ccgccgtcga acggcttcag aaacgccggc aacccgacgt aatcgatgat
      121 gccctgccag tcgatcggaa agacgagatt gcgcaaactc tcgctgacga tgccctggat
      181 gtaatccttc tgcggcagca gcaccgtctt cggaatggcg acgccgagct tcttgccgag
      241 tgaatagttg aaaaacttgt cgtcggccga ccaccagaac ggattgttga ttattttcgt
      301 gccttcgagc gccatccgct tcaaagtggc tctataaaac ggcacctcgt gcgaaatgcg
      361 gtcgatgacg agatcgtact gcggcggcgc gtcgtaacga acgccgtcga gcttgatgta
      421 ctccgcgacg acgtcgccgc cgcccttctc attaatgcgg ttgatgattg cctcgggaaa
      481 agttttctcc cggcctacca aaactcccac acgcttcatt tgtgctgcgc atcctttctg
      541 caaaaacgaa gcaaaatacc ttcggcgctg ttgcttgtca aaccgcccaa tacatggcta
      601 caattcgctt ctccctactg tttgcctgga atccaaggag atcagctagt ttgtttcgcg
      661 cacctttgcc cctcatagtt ctgtccacgc tcttagtcgt aatgcccctg gtcgggatta
      721 acccggcggc ggcagccctg caagacccga aaacgcagga ggctaagccc caggaaacca
      781 agccacaaga gactaagcag gagcctcggc cgcagcccgg cgacgcgaaa agtcaggacg
      841 ttaagtacac ggccgagcag atcgttgagt ctgtgatcct cgtctacggc acgcgcccgg
      901 ccctcgaaca cattcgccgg aacggcatcg aacgcggcag gattacgcgc tacaaccccg
      961 aaggaaacac ggaagaaacc aactacgagc gccgttttgt aaggggcgaa accctcaaca
     1021 aagacaagat tcgtctcgat cagaagctgc cgacgatgga atattcgtta attttcgacg
     1081 acggcaaact ctggggcatc atcaacggcg ccgccttcac gccgcgccag gacgcgaccg
     1141 cggattttct ctcgcaacat cgccacagca tcgactcgct gctgcgttac aaagaatgcg
     1201 gctcgacgat ctcgctcgtc ggcagagacc agcaaaaggg gctggatctg tacgtggtcg
     1261 atctgacgga caaagagcag cgcaagacgc gttatttcat cagcgcccgt tcgctgcgcg
     1321 tgctttggtt ggactacgag gaaggcacac cgggcggaac tccggtgaag tacacgcgca
     1381 agtttctgga ctatcgcgtt gtccagcaga cgctcgtgcc gtaccgcatt gttttgaccg
     1441 ccaacggccg tgaaagccag gaaacgcgcg ttctcaccat cacctacggc gtaaaagtca
     1501 gcgactccat cttcaagagc cccgaagcct aaatctcaca cggatttcag ggaaccgggg
     1561 ccggatcggg gcgtgtatac ctgtcggttg gcgctccgta tagctataat cacaactccg
     1621 tcagccatat tgttttcgag cctgcctgcc tgatgaacac gttgactacc atcgatgagc
     1681 tggccttcgc gccgagcttg ccgcaagaga cgttggagga cacgacctcc gatcatgcct
     1741 tgctggaagc cacccggagc ggagaccagg acgccttcgc tgagttagtc agccgttacc
     1801 ggaaccagat aacgagctac atctaccgca tgacaagcga ctatgacggc gccgtcgatc
     1861 tggctcagga aaccttcgtg agggtctatc gcgcaaggga tcgttatcaa cgaagttatg
     1921 cattttcgac ttacatctat cgcatcgcga cgaacctggc gatcagcgag ctgcgcaagc
     1981 gcaaacggcg caaactcgtt tcgctgaccg ggttctttca ctcgaccgac ggcggagagg
     2041 caaaggaact gaatccgccc gacggccggc cgttgcagga ttcggaactc gtcgatcagg
     2101 aacgccgcga cgcagtgcaa cgagccatcg gcacgctgcc cgagaaatat cgcgcgccgc
     2161 tgatcttgcg cgacgtcgac ggccgcagtt acgacgagat cgccgcgatc ctggaaacaa
     2221 gcgaaggcac agtgaagtcg agaatcaacc gtgcgcgagg atttctccgc gaaaagatgc
     2281 gggcttattt gtagatgagg taattatgaa agataaacga tgtgaacctg ttcggcggga
     2341 gctcgaagag ctgatgctga acgacaattt cagcgcggct accggcgagc acttgcgaac
     2401 gtgcttcgag tgtcgtgagt ttcagcg
//
LOCUS       DASWTX010000945         5981 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_11102, whole genome shotgun sequence.
ACCESSION   DASWTX010000945 DASWTX010000000
VERSION     DASWTX010000945.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5981)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5981)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5981
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11102"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            43..315
                     /locus_tag="VGD38_14280"
     CDS             43..315
                     /locus_tag="VGD38_14280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729241.1"
                     /translation="MNERDIFNEKEEVKKAVYSCPHCRERAEYDVRWLKRTKKAQAPR
                     GINEQDKARFQNSRDYMVRIDDMLACRNARCRRRFEIPSSQTVVFI"
     gene            437..1135
                     /locus_tag="VGD38_14285"
     CDS             437..1135
                     /locus_tag="VGD38_14285"
                     /inference="COORDINATES: protein motif:HMM:NF013250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HEY0729242.1"
                     /translation="MIDTQQFPGATKSNNSFLTPFERRLAPVVLPRIPAWIETYHLTM
                     LTLVWSGLILLFSYWAAKDLRWLWGVSVMVFLQYLTDHYDGKIGKYRGTGLVRWGYYM
                     DHFLDYVFLCSIIIGYSFILPDRSRYQILIMLAIFSGYEVSTFLAFAATDRLKISYLK
                     FGPTEFRLAVIIINALLVQYGTRQMVNGLKYVNIGAAVGLVLMIYKTHKTIWAMDIKH
                     KRALDTEESAFLSR"
     gene            1379..1588
                     /locus_tag="VGD38_14290"
     CDS             1379..1588
                     /locus_tag="VGD38_14290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729243.1"
                     /translation="MSEKKQIRIVKKGEKIRPVVKAKTNTARETARDMVETVTNWVTE
                     FQKRRRDETTNALRILSKTPSGSEA"
     gene            1729..1914
                     /locus_tag="VGD38_14295"
     CDS             1729..1914
                     /locus_tag="VGD38_14295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729244.1"
                     /translation="MARRSSPPKTKRVQARPVFDSIRKPVAPPGHPLSRAKPDEVARP
                     AQRKAKHKQRPEVTEDE"
     gene            1967..2515
                     /locus_tag="VGD38_14300"
     CDS             1967..2515
                     /locus_tag="VGD38_14300"
                     /inference="COORDINATES: protein motif:HMM:NF019241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY0729245.1"
                     /translation="MSTPITTTPERFLSCAREFLVEEYLPKIERCLERLSDEQIWWRP
                     NEESNSIGNLVLHLCGNARQWIVSGVGGAADARVRDAEFAQRDSIPRAELLTLLRTTL
                     ADVAAVLKNLSPETLLEKRTIQGSDVDILEAVFHVTEHFSMHAGQIFLLTKLLTRTGL
                     CFYDFEAGAPVERWRSGPSGSS"
     gene            2667..2933
                     /locus_tag="VGD38_14305"
     CDS             2667..2933
                     /locus_tag="VGD38_14305"
                     /inference="COORDINATES: protein motif:HMM:NF016167.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF433 domain-containing protein"
                     /protein_id="HEY0729246.1"
                     /translation="MIDENTVSRDELLSRITINPNVCFGKPCIKGTRIWVSLILDFLA
                     SGMSQEEVLEEYSDLAPLDIQACLAYGAEMSRERHVPIPITSAA"
     gene            3540..3935
                     /locus_tag="VGD38_14310"
     CDS             3540..3935
                     /locus_tag="VGD38_14310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729247.1"
                     /translation="MAYITHRASNTHHVSLLTRRVLFVVCLLALLLPTIPVSRTTAQD
                     GVLRVRRSDNYEISPRHIHIGRMTQEYRELLREKFKRGRDLLMKKGVPFEPNDLLEPG
                     WRKKLKPKFAQMPELRETRVLTQRQIRGV"
     gene            3954..4127
                     /locus_tag="VGD38_14315"
     CDS             3954..4127
                     /locus_tag="VGD38_14315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729248.1"
                     /translation="MPEKVEVTGDTSISLDYGEARRRDRYGNSFRFRAKVSGSNPRDL
                     GRWAYDVFLVMSP"
     gene            4233..4511
                     /locus_tag="VGD38_14320"
     CDS             4233..4511
                     /locus_tag="VGD38_14320"
                     /inference="COORDINATES: protein motif:HMM:NF024644.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HEY0729249.1"
                     /translation="MTYIVAEPCVNCRYTDCALVCPVEAFHLDDDMLVINPETCIDCD
                     ACVPECPVEAVFSEGALPAEWSNYTAINADRALSGLPTISARLDPLCE"
     gene            complement(4735..5511)
                     /locus_tag="VGD38_14325"
     CDS             complement(4735..5511)
                     /locus_tag="VGD38_14325"
                     /EC_number="3.1.4.17"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004114 - 3',5'-cyclic-nucleotide
                     phosphodiesterase activity [Evidence IEA];
                     GO_function: GO:0008081 - phosphoric diester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-nucleotide phosphodiesterase"
                     /protein_id="HEY0729250.1"
                     /translation="MRIELLPSTFDDQGVATLEQRLTCFLIDDCVAVDAGSIAIALDN
                     EQRNKVRDIIVTHPHMDHIASLPIFIDDLYPSLKQPMRIHATPEVIDLLERDVFNWNV
                     YPRFSDLKNDYGPVMEYVPIPIGESFPVAHLNVKAVPVNHIVPTVGLVVSDGQTSVAF
                     SSDTAETEDFWKLVNEVKHLDALLVETSFPNRMAKLAAVSRHFTPASLNEELKKVAHN
                     GMDIMAVHLKPSYRAEIIQQLGELGIPNLQVMEPGRIYSW"
     gene            complement(5607..>5981)
                     /locus_tag="VGD38_14330"
     CDS             complement(5607..>5981)
                     /locus_tag="VGD38_14330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729251.1"
                     /translation="LTYILVMIPAFIILLGVIGIALRREGQVVREFLVVELDRGILTR
                     EEYDQLGSIMGRMGSSFNALSKSGMRGWRARRRFNQLASELAFHRSRVSRGVHSAAQD
                     VLAQEAAYLQALQALVNELRGR"
BASE COUNT         1346 a         1634 c         1613 g         1388 t
ORIGIN      
        1 gctttgtgaa gctcaaggcg cgggcctcag tgaaaaggac ttatgaacga gcgcgatatt
       61 ttcaacgaga aggaagaagt aaagaaagcg gtgtacagtt gtcctcactg ccgcgaacga
      121 gccgagtacg acgtccgctg gttgaagcga accaagaagg cgcaagcgcc tcgcgggatc
      181 aacgagcagg acaaggcgag gtttcagaac tcgcgggact atatggtcag gattgacgat
      241 atgttggcat gccggaatgc tcgctgccgg cgccggtttg aaattcccag ctcgcagacg
      301 gtcgtcttca tctgaagaaa aacccgacac tcgtcggatc gagatctcga tcgtcctcca
      361 ctgatcgcga aaaaacctcg aaaaatgttg gcttggggct tgcactgtcc ggttcaggca
      421 ggtcttagcc ccaattatga ttgataccca acaattcccc ggcgcaacta agtcgaataa
      481 ttccttcctg accccgttcg agcgacggct cgctccggtc gtgttgccac ggattccggc
      541 gtggatcgag acgtatcacc tgaccatgct gacgctcgtc tggtcgggtt tgattctgct
      601 gttctcttac tgggcggcga aggatttacg ctggttgtgg ggcgtgtcgg tcatggtctt
      661 tctgcaatac ctgaccgacc attatgacgg caagatcggg aagtaccgag gaacaggtct
      721 cgtgcgttgg ggctactaca tggatcactt cctcgactac gttttcctgt gctcgataat
      781 cattggctac tcgttcattc ttcccgacag gtcgcggtat cagattctga tcatgctcgc
      841 gattttttcc ggctatgaag tgagtacgtt tctggcgttt gccgccacgg atcggctgaa
      901 gatcagctac ctgaagtttg ggccaaccga attccggctt gcagtcatca taatcaacgc
      961 cctcctggtt cagtacggaa cacggcagat ggttaacgga cttaagtacg tgaacatcgg
     1021 cgccgctgtt ggtctcgtgc tgatgattta caaaactcac aagaccatct gggcaatgga
     1081 cataaaacac aagcgcgctt tggacacgga agaatccgcg ttcctgtctc ggtaaaaacc
     1141 agcgtgtctt tgttgagtgt acggtttacg accggaacga ctgcggggcc agcctttctc
     1201 gtttaagaaa tcgaacggca aatgaccctt tttccgccgc gcttccgcgt tagcggatgt
     1261 ggcctcttct ttgcaagtgt gaaagccgtc aatcgttctt ggggtagaaa ttcgggaact
     1321 gtaagacgag aaattcgttg gataccagta gattcaacgc taactcgaat aaatagcaat
     1381 gtcagagaag aaacaaattc gaatcgttaa aaagggcgaa aagatccgcc cggtcgtcaa
     1441 ggcaaaaaca aacaccgccc gcgaaacggc gcgcgatatg gttgagaccg tgaccaattg
     1501 ggttaccgaa ttccagaagc gccgccgcga cgaaaccacg aacgcgttaa gaattctctc
     1561 caaaacgccg agtggtagtg aagcctaaat cccgcgtttc ggtaaaaatg tgtagtcttt
     1621 agacccggca gatcctctca gcaggtaggg gtgtgtttat tgacaccgtt tcgcggcggc
     1681 gctagcatcg cgccagttcc gcgaaagaat ctgagtggag gctggattat ggcgagacga
     1741 agttctccac cgaagacgaa gagagtgcag gcgcgtcctg tgtttgacag catccgcaag
     1801 cctgtggcgc cgcccggcca tccactgtcg cgagcgaagc cggacgaagt tgcgcggccg
     1861 gcgcagcgca aagcgaagca caagcagcgg ccggaagtga ccgaagacga gtaaggcttc
     1921 aagcgggtcg tccgggtttc gatgtgttgc cttttgggga cagtaggtgt ccactccaat
     1981 caccactaca ccagaaagat ttctatcctg cgcgcgcgag tttctcgtcg aggagtatct
     2041 gccgaaaatc gaacgctgtc tcgagcgttt gagtgacgaa cagatctggt ggcgaccgaa
     2101 cgaggagtcg aacagtatcg ggaacctcgt gttgcacctg tgtggaaacg cgaggcagtg
     2161 gattgtttcg ggtgtgggcg gtgcggctga tgcgcgtgtg cgtgacgcgg agtttgcgca
     2221 gcgtgattcg atcccgcgcg ccgagttgtt gacgcttttg cgaactactt tggcggacgt
     2281 cgccgctgtc ctaaaaaatc tctctcccga aacgcttctc gagaagcgca caatccaagg
     2341 ctccgacgtc gacatcctcg aagccgtctt ccacgtcacc gaacacttct cgatgcatgc
     2401 agggcaaatt tttctgctga caaagctcct cacgagaacc ggtctatgct tctacgattt
     2461 tgaagccggt gcgccagtag agcgttggcg ctcgggacca tccggttcgt cttaagagcc
     2521 ggaaagtgaa aacgggcaac gctttcggag agcaagcacg ctccttctcg cttggagccg
     2581 tttgtgaatt gcggttgact tggcgccgct ttggattcaa cgtggcattt cgcctatcca
     2641 acaattgagt tagaatctga attaccatga ttgacgagaa cactgtttcg cgcgatgaac
     2701 tactaagccg gataacgatt aacccgaatg tttgtttcgg caagccatgc attaaaggca
     2761 cgcgcatttg ggtatccctc attcttgatt tcctcgcttc aggcatgtcg caggaagagg
     2821 tcttggaaga atattccgac ttggctccac tcgacattca ggcctgcctc gcctatggcg
     2881 ctgaaatgag tcgcgaacgt catgtgccaa tcccgatcac ctccgctgca tgaagttgaa
     2941 gcttgacgag aacttcggcc ggcgttgcgt tgatattctg ataagttccg gtcacgatgt
     3001 cgccacagtt gccggccaac acatgtccgg cgccgccgat caagatctaa ttcaagtctg
     3061 ccatgcagaa tcacgttgtc tcgttactct tgacctcgac tttgccaatc cgctgcgttt
     3121 taaccggcga actactccgg cattgccgta attcggctgt ccggccgcgc cagctacgcc
     3181 gaattgctta ccgccgtcac tacctttgcc aaagcacttg agactgagtt catcgaccat
     3241 cagctttgga ttgtcgaaat tggtcgcata cgcgtctacc gtcccggaga cgattactga
     3301 cctctgagcg cagacccttc gatcctgacc atctgttctt ttggctactg ctcactgctt
     3361 actgatgctg ggccttcgtt ctgatgcgac atgatgcgcc aagattcagc cgtctgacta
     3421 agaaaacgtt tgcatttttc ctttattcgc cgctatactc ggaccgctca cattcgctcc
     3481 ctcccaacag tctacagttt cgttaattca ggttctggac tcgaactcga ggagacctca
     3541 tggcctatat cactcaccgt gcgtctaaca cccaccatgt gtcgctgctt actcgccgtg
     3601 ttttattcgt agtctgtctg cttgcgctgt tactgccgac aattccagtc tcgcggacca
     3661 cggctcaaga tggtgtgttg agagttcgtc gtagcgataa ctatgaaata agccccaggc
     3721 atattcacat cggaagaatg acgcaggagt accgcgagct cttgcgtgaa aagttcaaac
     3781 ggggccgtga cttgttgatg aaaaaaggcg tgccgtttga gccaaatgat ctactggaac
     3841 ccggctggcg gaaaaaacta aagccgaagt ttgcgcagat gcctgaactg cgcgagacgc
     3901 gtgttctcac gcaaaggcag atcaggggcg tgtagttagc ggacaccttg tacttgcccg
     3961 aaaaagttga ggtaaccggc gacacgtcga tctcgctcga ctacggcgaa gcacgacggc
     4021 gcgatcgtta cggcaactcg ttccggtttc gagccaaagt ctccggttcg aaccctcgcg
     4081 acctcggccg ctgggcttac gatgtttttc tcgtaatgtc gccctgaggc gtagagactt
     4141 cttccaaaac acagcgcttt ctgtttaata tagccgcgat ccgtggtctg caatccggag
     4201 ctttcatcat cttttccagg agccgattct gaatgaccta catcgttgcc gagccctgtg
     4261 ttaactgtcg ctatactgat tgcgccttgg tttgccccgt cgaagccttc caccttgacg
     4321 acgacatgct cgtgatcaat ccggaaacgt gcatcgactg cgatgcgtgc gtgccggagt
     4381 gtccggttga ggcggtgttc tctgaaggcg cgctgcccgc cgagtggtcc aactacaccg
     4441 ctatcaacgc cgatcgcgcg ctcagcgggt tgccgacgat ctcggccaga ctcgatccgc
     4501 tttgcgaata actaaatgca cgctgaaaga aaagttggtg acgtttgggc caggcccgga
     4561 atgatggtca cgttccgggc tgaactcatg cccggccgtg aacgccacga acgtacgttt
     4621 cgggtaaagc aattattttc gagtggccgt gtttcgctgc acggcgttga cggtgagcac
     4681 gctgagaagg aatttgaacc cgtccagttc gaccggccga tcgagtagcg cgacctacca
     4741 gctataaatc ctgccaggtt ccatcacttg tagattcgga atccccaact cgccgagttg
     4801 ctgaatgatc tccgcgcgat aactcggctt cagatgcacg gccatgatgt ccatgccgtt
     4861 gtgcgccacc ttcttgagct cttcgttcag cgacgcaggc gtgaagtgac gcgaaactgc
     4921 agcgagcttc gccatccggt tcggaaacga cgtttcgacg agcaacgcgt ccagatgctt
     4981 cacttcatta accagcttcc agaagtcttc cgtttccgct gtatcagaac tgaaagccac
     5041 gctcgtctgc ccgtctgaaa cgaccaaccc gactgtcggc acgatgtgat tgaccggcac
     5101 cgccttcaca ttcagatggg ccaccggaaa cgattctccg atcgggatcg gcacgtactc
     5161 catcactggt ccatagtcgt tcttcaagtc ggaaaaacgc ggatacacgt tccagttgaa
     5221 cacgtcgcgt tcgagcaggt cgatcacttc cggcgtcgcg tgaatgcgca tcggctgttt
     5281 caacgacgga taaagatcgt cgatgaagat cggcagactg gcgatgtggt ccatgtgagg
     5341 gtgagtgacg atgatgtctc tgactttgtt gcgctgctcg ttgtcgagcg cgatcgcgat
     5401 gctgccggcg tcaaccgcca cgcaatcgtc gatcagaaaa caagtcaggc gttgttccag
     5461 ggtggcaacg ccctggtcat caaacgtact cggtaaaagt tcgattctca cgagctttag
     5521 ctctgttgga gtgtctttcc aagaccgggc cagtataagt cagaaacaga cgggcagcga
     5581 gcgctaatac atcgtttgtg cgaaaactaa cggccccgga gttcgtttac cagtgcttgt
     5641 aacgcttgta gatacgcagc ctcctgggcg agtacgtcct gtgcagccga atgaacgccg
     5701 cgtgaaacgc gactgcgatg aaacgccagc tcgctcgcga gttgattgaa acgacgccgc
     5761 gcccgccagc ctctcatgcc cgatttggaa agcgcattga acgacgatcc catgcgcccc
     5821 atgatcgatc ccagttggtc atactcttct cgcgtcagga tgccacgatc gagctcgaca
     5881 accagaaact ctcgcacgac ctggccctcg cgccgtaacg caattccgat aacaccgagc
     5941 aggatgataa acgccgggat catcaccaga atgtaagtga g
//
LOCUS       DASWTX010000946         3588 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_167501, whole genome shotgun sequence.
ACCESSION   DASWTX010000946 DASWTX010000000
VERSION     DASWTX010000946.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3588
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167501"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(86..967)
                     /locus_tag="VGD38_14335"
     CDS             complement(86..967)
                     /locus_tag="VGD38_14335"
                     /EC_number="2.4.2.28"
                     /inference="COORDINATES: protein motif:HMM:NF005657.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5'-thioadenosine phosphorylase"
                     /protein_id="HEY0729252.1"
                     /translation="MSNLPRVRFGIIGGSGLYQMPELTGVEEVKVETPFGDPSDAFVV
                     GTLEGERVAFLPRHGVGHRYTPTEVPFRANIYAMKLLGVERILSASAVGSLQEKYAPL
                     DMVIPDQFFDRTRGRVRESTFFGEGIVAHISFAHPVCSDLGDLLQESCGVADVKAHRG
                     GTYLCMEGPAFSIVAESEVYRSWGMDIIGMTNLQEAKLAREAEICYATLALVTDYDCW
                     HPGHDAVSIETVVEYLNKNVRNAQMILREAVRRLKDSERNCKCGSALAHAIFTQPDHW
                     PAETAKKLEAIIKKYQR"
     gene            complement(964..1833)
                     /locus_tag="VGD38_14340"
     CDS             complement(964..1833)
                     /locus_tag="VGD38_14340"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY0729253.1"
                     /translation="MIAIQVGEYSVQVIQDAEFRLDGGAMFGVVPRKLWSQVFPADDE
                     NRIRLNMNCVFVLAGSEKVLIETGIGDKWPAKLSAMYGIDRARTLAETLFEQTGVAAD
                     EVTIVVNTHLHFDHAGGNTRLDSDGNAVATFPNARYFVSRAEFEHAEQPTERDRASYL
                     PDNWRPLVASGQLEPKEETYEVVPGLTMETVAGHNRSMQCWRLERDGTTMFGFADLVP
                     TRAHLRLPWIMGYDLYPVETLEAKKRLLPEAARNEWLCLFYHDPDEPVCRLQEGEKEL
                     IAIPFRAEEKPIS"
     gene            complement(1833..3131)
                     /locus_tag="VGD38_14345"
     CDS             complement(1833..3131)
                     /locus_tag="VGD38_14345"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF025002.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEY0729254.1"
                     /translation="MTSTRKALIAAAIALIFSAGLIFWQVKARKVGPVELTAEDMAVI
                     GELQSPQFRAQLATDEKTRKDFAKDLKQLLAVAEEAQAHGVDKTPEMKRQLEFQKTSI
                     IAQNYFKEQGEAGPNFTDQEVDEFFKQPGNQQKFEQLLDDARKSDPQFAAQQIPEDQM
                     AQLKQRLGRVYLAERKAIEQGMDKKPAVRLQVLLQTSRVIAIKYAEDKLKDKMTATDA
                     EVDAYLASHPEMDTDKKQREQADAVLKRLRAGEDFAKLAQEFSTDGSKEKGGDLGWFG
                     RGQMVPEFEKAAFALKPGEISDVVQSQFGFHIIKVEEKKTETKDGKPEEMVHARHILF
                     SEANANPFGGPPQTGREKAKAAVSQEKQKKVLEEIEARSQVKVADNYTVKPPEQQPMQ
                     GLPPGFGAPPSGEQAPAPAPEPSKPATKATPAPKKPTKSN"
     gene            complement(3151..3546)
                     /gene="mce"
                     /locus_tag="VGD38_14350"
     CDS             complement(3151..3546)
                     /gene="mce"
                     /locus_tag="VGD38_14350"
                     /EC_number="5.1.99.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR03081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA epimerase"
                     /protein_id="HEY0729255.1"
                     /translation="MKVDHIGIATPTIDEGLAIWRDALGFTPEATEEVTEQGVRVCML
                     PVGESHVELLEPLSAESAVGKFLAKRGPGIHHIAIEVRDINASLAELKKKGARLIDET
                     PRVGARGCLVAFIHPTSTNGVLLELVQHQ"
BASE COUNT          734 a         1148 c          905 g          801 t
ORIGIN      
        1 gcaacgcaaa gcgttgccgc catcaataag ataaaaaagc cgattttcat ggcgtaagtc
       61 acctcacaaa aactaacgca ccaaattagc gctggtactt tttgatgatc gcttccagct
      121 tcttcgctgt ctcggcgggc cagtgatccg gctgagtaaa gatcgcgtgc gccagcgccg
      181 aaccgcactt gcagttacgc tcgctgtctt tcagacgacg aaccgcttcg cggagaatca
      241 tctgtgcgtt gcgcacattc ttgttcaagt actcgaccac ggtctcgata ctcaccgcat
      301 cgtggcccgg atgccagcag tcgtaatccg tcaccagcgc gagcgttgcg taacaaatct
      361 cggcttcacg cgcgagtttg gcttcctgca agttcgtcat gccgatgatg tccatgcccc
      421 acgagcgata gacctcagac tcggcaacga tcgaaaacgc cggcccctcc atgcacaaat
      481 acgtcccacc acgatgcgcc ttcacatcgg caacaccaca cgactcctgc aacaagtcgc
      541 ccaggtccga acaaaccgga tgcgcgaaag aaatgtgcgc gacaattccc tcaccaaaaa
      601 acgtcgactc gcgaacacgc ccgcgagtgc gatcgaaaaa ctggtccggg atcaccatgt
      661 ccagcggcgc atacttctcc tgcaacgatc caaccgccga agccgagaga atccgttcca
      721 cacccaacaa cttcatcgcg tagatattcg cgcgaaaagg aacctcagtc ggcgtgtatc
      781 gatggcccac accatgacgc ggcaaaaacg cgacgcgctc gccttcgaga gtcccgacga
      841 caaacgcatc cgacggatct ccaaaaggcg tttcaacctt aacttcttca acgcccgtca
      901 actccggcat ctgatacaaa ccgctgccgc cgatgatgcc aaagcgtact cgtggaagat
      961 tgctcatgaa atcggttttt cctccgcgcg aaacggaatc gcaatcaatt ccttctcgcc
     1021 ttcctgtaat cgacaaaccg gctcatccgg gtcgtgatag aacaaacaga gccactcgtt
     1081 acgcgccgcc tccggcaaca aacgcttctt cgcttccagc gtctccaccg gataaaggtc
     1141 gtaacccatg atccacggca accgcagatg cgcgcgcgtc ggcacgagat cggcaaaccc
     1201 gaacatcgtc gtgccatcac gctccaaacg ccagcactgc atcgagcgat tgtgccctgc
     1261 gacggtttcc atcgtgaggc ccggcactac ttcgtaggtc tcttccttcg gctcgagttg
     1321 tcccgaagca acgagcggcc gccagttgtc gggcaaataa ctcgcacgat cgcgttcggt
     1381 cggctgttcg gcatgttcga actcggcacg cgagacgaag taacgagcgt tcgggaacgt
     1441 cgcgaccgcg ttgccatcgg aatccagccg cgtgtttcct ccggcgtgat cgaagtgcag
     1501 gtgcgtgttg accacgatcg tcacttcatc cgccgcaaca ccggtttgct cgaacaacgt
     1561 ttccgcaagc gtccgcgccc gatcgatgcc gtacatcgcc gacaacttcg cgggccactt
     1621 gtcgccgatg ccggtctcga tcagcacctt ctcagatccg gccaagacga acacgcagtt
     1681 catgttcagc cggatacgat tctcgtcatc cgcgggaaaa acctgcgacc aaagtttacg
     1741 agggaccacg ccgaacatgg cccctccatc aagacggaat tccgcgtcct gaattacctg
     1801 aacagagtat tcgccaactt gaatggcgat cattagttcg acttcgtcgg cttcttaggc
     1861 gctggtgtcg ccttagtcgc cggcttcgac ggctcgggcg ccggcgcagg cgcctgctcg
     1921 ccactcggcg gcgcaccaaa gcccggaggc agtccctgca tcggctgctg ctcaggcggc
     1981 ttcacggtgt agttgtcagc caccttcacc tgagagcgag cttcaatctc ttcgagcact
     2041 ttcttctgct tctcttgtga cacggcagcc ttcgcctttt cgcgtccggt ttgcggtgga
     2101 ccaccaaaag gattggcgtt tgcctcgctg aacaggatgt gacgcgcgtg gaccatctct
     2161 tccggcttgc cgtccttggt ctcagtcttt ttctcttcga ccttgatgat gtggaaacca
     2221 aactggctct gcaccacgtc gctgatctcg cccggcttca acgcaaacgc ggccttctca
     2281 aactccggca ccatctggcc gcggccaaac caacccaggt cgccgccttt ctctttgctg
     2341 ccgtccgttg aaaactcctg cgcgagtttg gcgaagtctt cacccgcgcg cagacgcttc
     2401 aaaaccgcgt ccgcctgctc gcgctgtttc ttgtcggtgt ccatctccgg atggctcgcc
     2461 aggtacgcgt cgacttccgc gtctgtcgcc gtcatcttgt ctttcaactt gtcttcggcg
     2521 tacttgatgg cgatcacgcg ggaggtctgt aacaacacct gcagcctgac tgcgggcttc
     2581 ttgtccattc cctgttcgat ggctttcctc tcggcgagat aaacgcgtcc caaacgctgc
     2641 ttgagctgcg ccatctgatc ctcgggaatc tgctgcgcgg caaactgcgg atcgctcttt
     2701 ctcgcatcgt cgagaagctg ctcgaacttt tgctggttgc cgggctgctt gaagaattcg
     2761 tccacttcct ggtcggtgaa gttaggcccg gcttcgccct gctccttgaa gtagttctgc
     2821 gcgatgatgc tcgtcttttg gaattcgagc tggcgcttca tttccggtgt cttgtcgacg
     2881 ccgtgcgcct gcgcttcttc agcgactgcg agcagttgct tcaggtcttt cgcaaaatcc
     2941 ttgcgggtct tttcatcggt cgcgagctgc gcgcgaaact gtggcgattg cagttcgccg
     3001 atcacggcca tgtcttccgc cgttaactca actggtccaa ccttccgcgc cttgacttgc
     3061 cagaagatca aaccggcaga aaaaatcagt gcaatagcgg ctgcaatgag agcctttcgt
     3121 gtagaggtca aaactaatat cctttcctga ctattgatgc tgcactagct cgagcagcac
     3181 gccattcgta gacgtcgggt gaataaaagc gactaaacaa ccgcgcgctc cgacgcgtgg
     3241 ggtctcgtcg atcaaccgtg cgcctttctt cttcaactcc gcgagcgatg cattgatgtc
     3301 gcgaacttca attgcgatgt gatgtatccc aggcccccgt tttgctaaaa actttccgac
     3361 cgccgattcc gcactcagcg gctcgagcag ttcgacatgg ctttcgccga caggcaacat
     3421 gcaaacgcga acgccctgct ccgtcacctc ttcagtagcc tccggtgtga agcccaacgc
     3481 gtcgcgccag attgcaaggc cttcgtcaat ggtgggcgta gcgatgccga tatggtcgac
     3541 tttcatctag ttcttcagta gttcctcaac cgcagaataa gggtctcg
//
LOCUS       DASWTX010000947         2119 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_365799, whole genome shotgun sequence.
ACCESSION   DASWTX010000947 DASWTX010000000
VERSION     DASWTX010000947.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2119)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2119)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2119
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365799"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..391)
                     /locus_tag="VGD38_14355"
     CDS             complement(<1..391)
                     /locus_tag="VGD38_14355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729256.1"
                     /translation="MSLELQRTLILTTTILLLAFVYLPSVSAQSERPQPHATPLPAPP
                     PLKLITKEERAQLEQTKEPKDRLKLTIELAAAHLTRAEQLTMQTEFEKAQEEVGMYHA
                     LIENSLEFLGALKRDSGKTRDLYKRLEL"
     gene            complement(466..1914)
                     /locus_tag="VGD38_14360"
     CDS             complement(466..1914)
                     /locus_tag="VGD38_14360"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0729257.1"
                     /translation="MRTSAWNKFLLTASCILLLALSAAAPVNAQGEQDFGEDASDPVR
                     LFERGQNAHARSQFEQALAFYEQALKVRPDFPEAQFQRGNALISLGRYDEAEKALRAA
                     ISLKKNWSMPYTALGALMLHRNRDTEAETSFRQALTIDKEDAVALRMLADIRVRAGDA
                     KEALDLAKRATAIDDAPAAAWIALALAQKANGDRTAAKATLDQVLQDEPQNVAALVDR
                     ADLLADEKQFDAALADLNAAAKAKPGDKAIASRLATTYQKAGKPEEALAVAKAAGIPI
                     PKPANPDGVVGTPEEIEAANSADPTVSRKAIEKLLETNPRNAMLLARLGASYRTDNPA
                     RSLEYYRQAAEIKPDSAEYAIGYASALVQARRFTDAATILKQVVRIDPQNYAAHANLA
                     TALYESKRYAEAVPEYEWILAAKPEIVVAHYFIATAHDYLGEYPQALASYEKFLAVAD
                     AGKNQLEIDKVKLRLPSLRRQIQLGEGAKKKP"
BASE COUNT          370 a          546 c          642 g          561 t
ORIGIN      
        1 ccagctcgag tcgcttataa agatcgcgag tcttgccgct gtctcttttg agcgcgccca
       61 aaaactcgag cgagttttcg atcagcgcgt gatacatgcc gacttcttcc tgcgcttttt
      121 cgaattcggt ttgcatcgtc agttgttcgg cgcgcgtgag atgtgcggct gcgagctcga
      181 ttgtcagttt caggcgatcc tttggctctt ttgtttgctc gagttgcgcc cgctcttctt
      241 tggtgatcag tttgagcggt ggcggcgcag ggaggggcgt tgcgtgcggt tgcggccgct
      301 cgctttgcgc gctgacagac ggcagataaa caaacgccag cagcaggatt gtggttgtta
      361 agataagcgt gcgctgtaat tccaacgaca ttttgaattc gactgtcctg agttcaacct
      421 ttaggttgtt cttgtctgag caagctaaag cttgaactca aaacttcagg gctttttctt
      481 tgcgccctct cctagttgaa tttgccggcg caggctcggc aaacgcagtt tgactttatc
      541 gatctcgagt tggttcttgc cggcgtcggc gacagccaga aacttctcat acgatgcgag
      601 tgcttgcggg tattctccaa gataatcatg cgcggtggca atgaaataat gggccaccac
      661 gatttccggt ttcgccgcca aaatccactc atactccggt actgcttcgg cgtagcgttt
      721 cgactcgtac aacgctgtcg cgaggttcgc gtgcgctgcg tagttttgcg gatcgatacg
      781 cacgacttgc ttcaggatcg ttgccgcgtc tgtgaagcgt cgagcttgca cgagagcgga
      841 cgcgtaaccg attgcgtact ccgctgagtc gggtttgatt tccgctgcct gacgatagta
      901 ttcgagcgat cgtgcggggt tgtctgtacg gtatgaggcc cccagacgtg caagcagcat
      961 cgcgttgcgc gggtttgttt cgagtagctt ttcgattgct ttgcgagaga ctgttgggtc
     1021 cgcgctgttt gcggcctcga tttcttccgg tgtgccgacg acgccgtcgg gattagcggg
     1081 ttttggaatc ggaatgcccg cggcttttgc gactgccaaa gcttcttccg gtttgccggc
     1141 tttttgatac gtggttgcga gacgcgacgc gatcgctttg tcgccgggtt tagcttttgc
     1201 tgctgcgttt agatctgcga gtgcggcgtc aaactgtttt tcgtcagcca acagatctgc
     1261 gcggtcgact agtgccgcaa cgttctgagg ctcgtcttgt agtacctggt cgagagtagc
     1321 tttggcagcc gtcctgtcac catttgcttt ttgcgcgagt gcgagtgcga tccacgcggc
     1381 tgctggtgcg tcgtcaattg cggttgcgcg tttggcgaga tcgagtgctt ccttcgcgtc
     1441 gccggcgcgt acacgaatat ccgcgagcat gcgcaaggcg acggcgtcct ccttgtcgat
     1501 cgtgagtgcc tggcgaaacg aggtttcagc ttctgtgtca cgattgcgat gcaacatcag
     1561 cgcgccgagt gcggtgtagg gcatcgacca gtttttcttc aacgagatcg cggcgcgcag
     1621 tgctttctcg gcttcgtcgt atctgccgag tgagatgagc gcgttgccgc gttggaactg
     1681 agcttcgggg aagtcgggac ggacttttag cgcttgttcg tagaaggcga gtgcttgttc
     1741 gaattggctg cgtgcgtgcg cgttctgtcc gcgttcgaac aagcgcacgg gatcgctcgc
     1801 gtcctcgccg aagtcctgtt cgccctgtgc gttgacgggc gcagcagcgc tcaacgccag
     1861 cagcagaatg caactcgccg tcaggaggaa tttgttccaa gctgatgtgc gcatctaaaa
     1921 ccaggtccgg ggaggttctg atactagcat ttctgtcagt cgccaaaaag gcagaaagag
     1981 cgccaacgct ttcagcgttt gaacttctct tcggaaagaa gacccagggt tgaagcaacc
     2041 ctgatgttat gaagcagcgc ctccgttcgt gagtgctaga ctcacgagca gctctgttga
     2101 catggagact gaaaggagg
//
LOCUS       DASWTX010000948         2070 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_206429, whole genome shotgun sequence.
ACCESSION   DASWTX010000948 DASWTX010000000
VERSION     DASWTX010000948.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2070
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206429"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2070
                     /locus_tag="VGD38_14365"
     CDS             <1..>2070
                     /locus_tag="VGD38_14365"
                     /inference="COORDINATES: protein motif:HMM:NF026255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="outer membrane beta-barrel family protein"
                     /protein_id="HEY0729258.1"
                     /translation="VGAIQLSKVAIALSDVEVKAERDVVTVEPDRNTYKAKDVAATAN
                     NASQVLENVPSVAVDGDGKVSLRGNENVVVQINGRPAPMTGAQLGNYLKQLPSAVIDR
                     VEVIPTPSARQDPEGMAGIINLVLKQNVDLGMSGGFTVASATASGRYNGNGNIGYQVG
                     PWTTFSSYGYNADDRDITGVNDRIRLLSTGLPSAYTEQDILGNQKNWGHNFTTTVDYK
                     VNTRDVLTNALTLNLRGFNDNSVATYSELNSTRTLLDYYNRARNTDVNSWMADYYVAL
                     KRTFEARKHELNGEIRYNANHDDDETDQWRLSLGAPGLTASSASALPIDREIAKTDAL
                     NQSLNAQIDYMKMLNPKTKLETGWKGTGRFIDRDYDVRKDALGNGQFVNSSLSNALDF
                     TEMVQAGYGVLSRNVTKWDLQAGLRAEYARRDFTLKNNNESFPYDYFSVYPSAIANYK
                     FNDGLTSKIAYSRRVRRPGTQELNPFPQFFDPQNVFFGNPKLNPEYTDAFELGLVRTG
                     KYGMFQVSPFFRHTTDIIRVNINTADTFEGRDVTSISFSNLEKSDSWGTDVNGQLRLG
                     PLGNILAGFNVFKMVTDGGSQSVLSSNAVMWRTNVNATLNFGKNRNTTFQGSYFYRGP
                     QTIERGKFSAQQMANFSLRQKIMEGKATVAFRVQDPFNTMGMKIRTGDDNITQLTQRK
                     FGVRAAF"
BASE COUNT          484 a          626 c          597 g          363 t
ORIGIN      
        1 acgtcggagc cattcaactc tcgaaggtcg cgattgcgct gagcgacgtc gaagtcaagg
       61 ccgagcgtga cgtggtcacg gtcgagccgg atcgcaacac gtacaaggcg aaggacgtcg
      121 cggccaccgc aaacaatgcg agccaggtcc tcgagaatgt tccttcagtt gcggtcgatg
      181 gcgacgggaa ggtcagcctt cgcggtaacg agaacgtagt cgtacagatc aacggccgtc
      241 ctgcaccgat gacgggagct cagcttggaa actatctcaa gcagcttccg tccgcggtga
      301 tcgaccgcgt cgaggtcatt ccgaccccgt cggcgcgcca ggatcctgaa ggaatggccg
      361 gcatcatcaa tctcgtgctc aagcagaacg tcgacctcgg aatgagcggc ggattcacgg
      421 ttgcatccgc aacggcgtca ggccgctaca acggaaacgg caacatcgga tatcaggttg
      481 ggccgtggac aacgttctcg agctatggat acaacgcaga tgaccgcgac atcaccggcg
      541 tcaacgatcg cattcgtctc ctctcgacgg gacttccttc tgcctacacc gagcaggata
      601 tcctcggcaa ccagaagaac tggggacaca acttcaccac gacggtcgat tacaaggtca
      661 acacgcgtga cgtgctgaca aacgccctca cgctcaatct tcgcggcttc aacgacaatt
      721 cggttgcgac gtactcggag ctgaactcga cccgcactct gctggattac tacaaccgcg
      781 cgcgcaacac ggacgtcaac tcgtggatgg ctgactacta cgttgcgctc aagagaacgt
      841 tcgaggcgag aaagcacgag ctcaacggtg aaatccggta caacgcgaat cacgacgacg
      901 acgaaacgga tcagtggcgc ctgtcactcg gcgcacctgg cctgacggcg tcgtcggcgt
      961 cagcgctccc gatcgaccgc gagatcgcga agacggatgc gctcaaccag tcgctcaacg
     1021 cgcagatcga ctacatgaag atgctgaacc cgaagaccaa gctcgagacg ggctggaagg
     1081 gaaccggccg cttcatcgat cgcgactacg atgtccgcaa ggacgcgctc ggcaacgggc
     1141 agttcgtcaa cagcagcctc agcaacgcgc tcgacttcac cgagatggtt caggccggtt
     1201 acggagttct cagccgcaac gtgaccaagt gggatctcca ggctggactt cgcgccgagt
     1261 atgcacgtcg cgacttcacg ctcaagaaca acaatgaaag cttcccgtac gactacttca
     1321 gcgtgtaccc gagcgcgatc gcgaactaca agttcaacga tggcctgacg agcaagatcg
     1381 cgtactcgcg tcgtgttcgc cgtcccggaa cgcaggagct caacccgttc ccgcagttct
     1441 tcgatccgca gaacgtgttc tttggaaatc cgaagctgaa tcccgagtac accgacgcgt
     1501 tcgagctcgg tctcgtgcgc accggcaagt acggcatgtt ccaggtctcg ccgttcttcc
     1561 gtcacacaac ggacatcatc cgcgtgaaca tcaatacggc ggatacgttc gaaggacgtg
     1621 acgtgacgtc gatcagcttc tcgaacctcg agaagagcga ttcgtggggc acggacgtga
     1681 acggccagct ccgcctcgga ccgctcggca acatcctcgc cggattcaac gtcttcaaga
     1741 tggtgacgga cggtggatcg cagtcggtgc tgtcgtcgaa cgcggtgatg tggagaacga
     1801 acgtcaacgc gactctcaat ttcggcaaga accggaacac cactttccag ggctcgtatt
     1861 tctatcgcgg accgcagacc atcgagcgcg gaaagttctc ggcgcagcag atggcgaact
     1921 tctcgttgcg ccagaagatc atggaaggaa aggcgacggt cgccttccgc gtccaggatc
     1981 cgttcaacac gatgggaatg aagatcagga cgggtgatga caacatcacg cagctcacgc
     2041 agcgcaagtt tggagtgcgc gcggcattcc
//
LOCUS       DASWTX010000949         3765 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_423800, whole genome shotgun sequence.
ACCESSION   DASWTX010000949 DASWTX010000000
VERSION     DASWTX010000949.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3765)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3765)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3765
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423800"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            241..1308
                     /locus_tag="VGD38_14370"
     CDS             241..1308
                     /locus_tag="VGD38_14370"
                     /inference="COORDINATES: protein motif:HMM:NF019605.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY0729259.1"
                     /translation="MPDRETFFITGFPGFIADRLLERLARTPSAFILLVQPSWLDRAR
                     HEVDRIAALTGRSPEDFRLVQGDITQPDLGLSRSDLELTRQRTTRVFHLAALYDLAVA
                     REPAMRVNVGGTRNVVEFARTLPWLRHFHHVSTCYVAGKREGVILETELRHDAGYRNF
                     YEESKHLAELEVETVKDQLPVTIHRPSVVCGDSRTGETVKYDGVYYLILYLLRWPSLS
                     SVNIGNHRVSLNLVPVDFVVDAMAALAFDQNAIGKTLQLSDPSPLTTNELFNTIAGAL
                     NGKRARITAPATWVRFFLMLPPSPGITGLPHSAVPYFFVKQLYDSSQAQALLKPHGIQ
                     CPPFESYVDQIVDFVKAHPRI"
     gene            1343..1750
                     /locus_tag="VGD38_14375"
     CDS             1343..1750
                     /locus_tag="VGD38_14375"
                     /inference="COORDINATES: protein motif:HMM:NF013629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HEY0729260.1"
                     /translation="MKGAKKASDHKLTPQREAVFQVILEREDHPTASDIFEAARQRLP
                     GISYATVYNSLRYLKEAGLVHEISFGDSASRYDRETGRHDHAICDCCGKLVDFHLPEA
                     AQLMQAAARKSKFKAQSVHLTLRGICPDCRESS"
     gene            1788..2354
                     /locus_tag="VGD38_14380"
     CDS             1788..2354
                     /locus_tag="VGD38_14380"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019258276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEY0729261.1"
                     /translation="MTATAVAVEKAMVGQPAPDFEMASTKNMEKLNEPVKLSDYRGKW
                     LVLVFYPLDFTFVCPTELTAFSDRYQDFLDIGADIIGISTDSVYSHRAWLNTPRDKGG
                     VEGLQYPLAADANQQVARDYGVLIENRGIALRGLFVIDPEGILRYKVIHDLNVGRSAE
                     ETLRVIQALQTGGLCQAEWKPGQKTLNA"
     gene            2433..2903
                     /locus_tag="VGD38_14385"
     CDS             2433..2903
                     /locus_tag="VGD38_14385"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY0729262.1"
                     /translation="MKIGTEMPRLDGATEWFGGTQAHTESEITGHPTLVHFWSASCGI
                     CKDNLPRVGQWRDEKRDQGLRVVGIHMPRYETDTDVEQVRELIGKYGITEPVAVDNEH
                     KLKDAFHNHNGYVPAYYLFDAEGKLKSFAAGERGLDMLKSAIERLLPVAEEAAV"
     gene            complement(2916..3443)
                     /locus_tag="VGD38_14390"
     CDS             complement(2916..3443)
                     /locus_tag="VGD38_14390"
                     /inference="COORDINATES: protein motif:HMM:NF024822.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4112 domain-containing protein"
                     /protein_id="HEY0729263.1"
                     /translation="MRALSFDAVPIERAARGRDTNVETSLERLSWLMDDLFRVPVLGW
                     RFGLDALLGLVPGFGDTATSLVSFYILAAAVRYRVPKVTLARMGLNIAFDYLAGSIPF
                     VGDLADAAWKSNHKNLDLLKKRATVSAEEARSGRFSDWLFVGGIILGLIALALASAFV
                     SLYLLLRLGELLAGS"
     gene            complement(3450..>3765)
                     /locus_tag="VGD38_14395"
     CDS             complement(3450..>3765)
                     /locus_tag="VGD38_14395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729264.1"
                     /translation="EKVIAALRKYYQANLHEIAQIEDLRIALVAEAPVEQRRMIGRTF
                     TRWLTAKRGDEDIAPPDQELAASLGIQSKQTPARSNDNKNALTALGKVGKFFWQQMTR
                     IR"
BASE COUNT          838 a         1087 c         1068 g          772 t
ORIGIN      
        1 caagaccgcc ggtggtgttc tggtctacgg gggcaaactg gtagacgtca ttaacctgaa
       61 gcagcgtcac gcggacgttg cagtcggttt gttggggcga tgcggtcgtt aggaacgcgc
      121 acaggatcag cgcgagagcc agcgctgcgc ggcgcaaagg gagcaactga aggatcataa
      181 aatttccttt gttgaagaat tctgaatcgc gaggaacgtg aattatactc gggtacttcg
      241 atgccggata gagagacatt cttcataacc gggtttcctg ggtttattgc ggatcgctta
      301 ctcgaacgtc tggcacggac gccgagcgcg ttcatcctgc tcgtgcagcc ttcgtggctg
      361 gaccgcgcgc ggcacgaggt cgaccggatc gctgcgctca cgggccgttc gcccgaagac
      421 ttccggctcg ttcaaggtga catcactcaa cctgatctcg gcctgagtcg gtcagacctc
      481 gaactcacac gccaacggac cacgcgcgtc tttcatctcg cagcgcttta cgatctcgcc
      541 gtcgcacgcg agcccgcgat gcgcgtcaac gtcggcggca cgcgcaacgt cgtcgagttt
      601 gcccgcacgc ttccgtggct acgacatttt catcacgtgt cgacgtgtta cgtcgccggc
      661 aagcgcgagg gcgtgatcct ggaaaccgag ctgcgacacg atgcgggcta tcgcaatttc
      721 tacgaagagt cgaagcatct cgcggagcta gaagttgaga cggtgaagga ccagttgccg
      781 gtgacgattc atcgtccgtc ggttgtgtgc ggcgattccc gcaccggcga aacggtgaaa
      841 tacgacggcg tttattacct gattctttac ctgctgcgct ggccgtcgtt atcgtcagta
      901 aacatcggca accatcgcgt gagcctgaac ctcgtgccgg tcgattttgt ggtggacgcg
      961 atggcggcgc tggcgttcga tcaaaacgcg atcggcaaga cgctgcaact ttccgatccc
     1021 tcgccgctca caaccaacga gcttttcaac acaatcgcgg gagcactcaa cggcaagcgc
     1081 gcgcgaatca cggcgcccgc gacgtgggtg cgtttcttcc tcatgttgcc gccgtcgccc
     1141 ggaatcaccg gcctgccgca ctccgccgtg ccttacttct tcgtcaaaca gctctacgac
     1201 tccagccagg cgcaggcttt actcaaaccc cacggtattc agtgccctcc gttcgagagt
     1261 tacgtcgacc agatcgtgga tttcgtgaaa gcccacccgc gcatttgaca tttgttggat
     1321 ttagaattag tctaagtcca ctgtgaaggg tgcaaaaaaa gccagcgacc ataaattgac
     1381 tccgcaacga gaagcggtgt tccaggtgat cctcgaacgc gaagaccacc cgaccgccag
     1441 cgacatcttc gaagcggcgc ggcagcgtct gcccggcatc agctacgcaa ccgtctacaa
     1501 ctcgttgcgc tacctgaaag aagccgggct cgttcacgag atcagctttg gcgacagcgc
     1561 cagccgctac gatcgcgaga ccggacgtca cgatcacgcg atctgtgatt gctgcggcaa
     1621 actagtcgat tttcatctac ccgaagcagc acaactgatg caggcggcgg cccgaaaatc
     1681 caagttcaag gcgcagtcgg ttcatttaac gttgcgagga atttgccctg attgtcgcga
     1741 gtcttcgtaa cgcataacgg aataattcaa acttctttgg aggatacatg acagcaacag
     1801 cagtagcagt agaaaaggcg atggtgggcc agcccgcgcc ggattttgaa atggcctcaa
     1861 cgaaaaacat ggagaaactc aacgagccgg tgaagctttc cgactatcgc ggcaagtggc
     1921 tcgtcctcgt tttctatccg ctcgacttca cgttcgtttg tccgaccgag ttgaccgcgt
     1981 tcagcgatcg ttaccaggac tttctggaca tcggcgccga catcatcggc atttccactg
     2041 actccgttta ctcgcaccgt gcgtggttga acacgccgcg cgacaagggt ggcgtggaag
     2101 gtctgcagta cccgctcgca gcggacgcaa accagcaggt cgcgcgtgat tacggcgtat
     2161 tgatcgagaa ccgcggcatc gcgctgcgtg gtctcttcgt gatcgatccg gaaggcattc
     2221 ttcgttacaa ggtcattcac gacttgaacg tgggccgctc ggcggaagag acgctgcgcg
     2281 tgatccaggc gttgcagacc ggtggacttt gccaggctga gtggaagccc ggccagaaaa
     2341 cgctcaacgc gtaagaaact ttgaccccac agattacaca gcaatgacgc tgtgtaatct
     2401 gtggcgaagt atgtgagaga acaacaatgg cgatgaagat tggaacagaa atgccgcgtc
     2461 ttgacggcgc gactgagtgg tttggcggaa cacaggctca caccgaatcg gaaatcacgg
     2521 gccatccgac actcgttcac ttctggtcgg caagctgtgg aatttgtaaa gacaacttgc
     2581 cgcgtgttgg acagtggcgt gacgagaaac gcgatcaggg attacgcgtc gtcggcattc
     2641 acatgccgcg ttatgaaact gacacggacg tcgagcaggt gcgtgagttg atcgggaagt
     2701 acggcatcac cgagccggtc gcggtcgaca acgaacacaa gctcaaagac gcgtttcaca
     2761 atcacaacgg ctacgtgccg gcgtattatc ttttcgacgc ggaaggcaag ctgaagagct
     2821 tcgccgcggg tgagcgcggc ttggatatgt tgaagtcggc gatcgagcgg ttgttgccgg
     2881 ttgcagaaga agcggcggta taggtcctat aggacctatg atccggcgag cagctcacct
     2941 aaccgcagca gcagatacaa actgacgaac gcgcttgcga gcgcaagcgc tattagtcca
     3001 agaataattc ctcccacaaa caaccaatca ctaaatcttc ccgaccgtgc ttcttcggca
     3061 gacacggtcg ctcgtttttt cagcaggtcg aggttcttgt ggttcgactt ccacgcggcg
     3121 tccgcgaggt cgccgacgaa aggtatcgac cccgcaagat aatcaaacgc gatgttcaat
     3181 cccattctgg cgagcgtgac tttcggcacg cgataacgaa ccgcggcggc aagaatgtag
     3241 aacgacacca gcgaggtagc tgtgtcgcca aaacccggaa ccaacccgag cagcgcgtcg
     3301 agcccgaagc gccagccgag cacgggcaca cgaaacagat catccattaa ccagctcagg
     3361 cgttcgagac tcgtctcaac gtttgtgtct cgcccgcgag cggcgcgttc gatcggaact
     3421 gcgtcaaaac tcaaagctct catctcaact caacgaatac gcgtcatctg ttgccagaag
     3481 aatttcccca ctttgcccag cgccgtcaaa gcattcttgt tgtcgttgga acgcgccgga
     3541 gtctgtttcg actgaatccc caacgacgcg gccaactcct gatcgggcgg cgcgatgtcc
     3601 tcatcacctc gcttggccgt aagccagcgg gtaaatgtac gtccgatcat ccgcctttgt
     3661 tcgaccggcg cctcggcgac gagcgcgatg cgcaggtctt cgatctgggc gatctcgtga
     3721 agattggcct ggtaatactt gcgcaacgcc gcgatcacct tttcg
//
LOCUS       DASWTX010000950         5372 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_230203, whole genome shotgun sequence.
ACCESSION   DASWTX010000950 DASWTX010000000
VERSION     DASWTX010000950.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5372
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230203"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..447
                     /locus_tag="VGD38_14400"
     CDS             <1..447
                     /locus_tag="VGD38_14400"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY0729265.1"
                     /translation="GILTDYLIATDNRFKAATSGAGTAFTVAFYGTDQYIIQYDYEIG
                     PPWNPQAWEIYQKISYPFLHADRIQTPTLFLGGERDFNVPVQGSQQMYQALRSLGIDT
                     QLIIYPNENHGIQRPSYQRDRMERYLAWYDKYIKKASAAPSTSTAR"
     gene            470..2092
                     /locus_tag="VGD38_14405"
     CDS             470..2092
                     /locus_tag="VGD38_14405"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0729266.1"
                     /translation="MKSVLLAVVLIVCGSAATRAQSCVTPEDVKQMQARVDASSQAKY
                     NKKLNEELLKMAEKHRELLQQIVAEDQKKKSDQDKLRKLNEKHAARFCEILKTSGWPS
                     TALVGQTGVLAAFHILKNSAPYELQRDLLPVILAVIKKDPTQKPEFAGLFDRLRVSAG
                     MKQFFGTQAVSIGGFLVLYPLEDESKVNTWRQEFGMGTIQENIRNLERQYGKTMIKSR
                     QPPASKLSKQLTDSISKALDSAELNDGTYVDPGDVIKTETNLVSLNVSVFNNKSKLFV
                     GSLTKEDFLVLEDGKEQTVSYFASTDVPFDLVLLVDLSGSTSEKRDLIKKSTLRFIEA
                     ARPDDRLAIVTFSDRTDVISPLTLDREQLKASVANMNGLGGSHVWDAVKFALDTILGP
                     KTMDRRRAVVLMSDGVDGALSRYGPPRGSTVSFADLLEQVRQTDTLIVPIYLDTEDQM
                     GGSYMSGEYENARRTLTLLAQESGGSYYKAKKLSDLEGVYEQVINDLGKIYSLGYKPT
                     NPERDGTWRNVRITIANREDLVTRARPGYYAQ"
     gene            2119..3558
                     /locus_tag="VGD38_14410"
     CDS             2119..3558
                     /locus_tag="VGD38_14410"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY0729267.1"
                     /translation="MIRRSLTLALYICLLSVLNPVPAQVRKRPVRTTTGPILEKNIRA
                     ELSFLASDALQGRGSGTGYERIAAEYIGSMFSQFGLEPGGDADASGVKGFVQRVPLES
                     SKFTEPPAFTVTAGSNTHKWQFGRDFLVSFLRAHKISGELQVIESSGAPAKGAVVVVK
                     LPEKAHAEQRRAVIMSAFGAGAAAVVLPETEANRKTREAGDARLPTLPGRVSAAGEVQ
                     FAAISLPQDAIDVLAGLPAGARAEFGGTTEQSDGGATWNVIGVIRGTDPSGEAIILSA
                     HLDHLGVNEQATGDKIYNGADDDASGCVAVLEMARVLAAGKRPRRTIYFICFGSEERG
                     GYGARYFVANSPVPLEKIVADFNFEMLGRPDDKVPPGALWLTGYERSTLGPELVRQGA
                     ALVKDPRPEQNFFQRSDNYTLALRGVIAHTVSSFNLHSDYHRPSDDVSKIDFPFMTRS
                     INSLVKPIQWLANTTFKPAWLPGQAPGRP"
     gene            3564..4169
                     /locus_tag="VGD38_14415"
     CDS             3564..4169
                     /locus_tag="VGD38_14415"
                     /inference="COORDINATES: protein motif:HMM:NF024769.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI/OmpD-associated family protein"
                     /protein_id="HEY0729268.1"
                     /translation="MTAKPKFFATPEKFREWLEKNHASETELLVGFHKKGSGKKSITY
                     AEALDEALCFGWIDGVKRSLNETSYTQRFTPRRARRIWSLVNVKHVERLKKEGRMHAA
                     GVAAYEQRDPKRTGIYAFENAPRELSAEYEKQFRKVKGAWEYFQTYPPYLKKTVSFWV
                     MSAKKEETRSARLQRLIESCARGERIGVLTAESAKNASKKP"
     gene            4239..4703
                     /locus_tag="VGD38_14420"
     CDS             4239..4703
                     /locus_tag="VGD38_14420"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY0729269.1"
                     /translation="MPDLLVNLLKLPAPESGPLEFLVRRAQPFEISAVRSFVAENFSQ
                     SWADEISVGFARQPISVFVATMERELIGFAAYECTRRGFFGPMGVVERAHGKGAGKAL
                     LLAALWGLREMGYIYGIVGAAGPVRFYQKTVGAIVIPDSEPGIYTDLLKSKQ"
     gene            4700..>5372
                     /locus_tag="VGD38_14425"
     CDS             4700..>5372
                     /locus_tag="VGD38_14425"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEY0729270.1"
                     /translation="MNSLPPGPKGKLITGVMREFNNDTLGFIERCQRDYGDVVRSRFL
                     YLYAYFLYNPADIEALLTTNAKSYRKARSLRSPFFYRLVGNGLVTSEGDFWRRQRRLA
                     QPAFHRQRISSYGDIMVQYADRAISQWRDGEQRDISREMTRLTLEIVVKTLFNSDVSN
                     DADHIGAMLSHIVKPFASQATLKWIADNRLPTPGHYRYFNAVSEIDKVVFRMIGERRA
                     SGSDEG"
BASE COUNT         1186 a         1490 c         1627 g         1069 t
ORIGIN      
        1 ggcattctca cggactacct gatcgccacc gacaatcgtt tcaaagccgc gacgagcggc
       61 gcgggcaccg cattcacggt cgcgttctac ggcaccgacc agtacatcat tcaatacgac
      121 tacgagatcg gtccgccgtg gaacccgcag gcgtgggaga tctaccagaa gatctcgtac
      181 ccgttcctcc acgccgatcg cattcaaacg ccaacgttgt ttttgggtgg cgaacgcgat
      241 ttcaacgtgc cggtgcaagg cagccagcag atgtaccagg cgctgcgcag cctcggcatc
      301 gacacacaat tgataatcta cccaaacgag aatcacggca tccaaagacc cagttatcag
      361 cgggatcgaa tggagcgtta cctggcttgg tacgacaagt acatcaagaa ggcctcggct
      421 gctcccagca cctcgacagc gcgatagccg cttgataaaa ctgcaagtaa tgaagtctgt
      481 tttactcgcg gtggtgttga ttgtctgtgg ttctgcggcc acgagggcac agtcgtgtgt
      541 cacgcctgaa gacgtgaagc agatgcaggc gcgcgtcgac gcgtcgtcgc aagccaagta
      601 caacaagaag ctcaacgaag agcttctcaa gatggccgag aagcatcgcg agttgctcca
      661 gcaaatcgta gccgaagacc agaaaaagaa atccgaccag gacaagctgc gaaagctcaa
      721 cgagaagcac gctgccaggt tttgcgaaat cctgaaaacc tccggttggc ccagcacagc
      781 gctcgtcggt caaaccggag tgctcgccgc ttttcacatt ctcaaaaaca gcgctcctta
      841 cgaactgcaa cgcgatctgc tgcccgtaat tctcgcggtc atcaagaaag atccgacgca
      901 gaagccggag tttgccggac tctttgatcg gttacgcgtt agtgcgggaa tgaagcagtt
      961 cttcggcacg caggccgtga gtatcggcgg ctttctggtt ctctatccgc tcgaagacga
     1021 gtcgaaggtg aatacgtggc gccaggaatt tggcatgggc accatacagg agaacatcag
     1081 aaatctcgaa cggcagtatg gcaagacgat gattaaatcg cgccagcctc cggcgagtaa
     1141 gctctcgaaa caactgaccg attcgatctc caaagcactc gactccgccg agctgaacga
     1201 cggcacttac gtcgatccgg gcgacgtgat caaaaccgag acgaatctcg tcagtctcaa
     1261 cgtgagcgtg ttcaataaca agtcgaaact gttcgtcggt tcgttaacga aggaggattt
     1321 tctcgtcctc gaagacggca aagaacagac ggtgagctac tttgcatcga ccgatgtgcc
     1381 atttgatttg gtgctgctgg ttgacttgtc gggatcgact tccgagaagc gcgatctgat
     1441 caagaaatcg actttgcgtt ttatcgaagc ggcccgtccc gacgatcgtc tcgcgatcgt
     1501 gaccttctca gaccgcacgg acgtcatttc accgctcacg ctcgatcgcg aacagctcaa
     1561 agcgagcgtc gcaaacatga acggcctcgg cggttcacac gtgtgggacg cggtgaagtt
     1621 tgcgctcgac accatcctcg gcccgaagac gatggatcgg cgccgtgctg tcgtgctgat
     1681 gagtgacggc gttgacggcg cactctctcg atatggacca ccgcgcggct ccaccgtctc
     1741 gtttgccgat ctactcgaac aggtgcgcca gacagacacg ctgatcgtgc ccatctatct
     1801 cgacaccgaa gatcaaatgg gcggcagcta catgtcaggc gagtatgaga acgcgcgccg
     1861 cacgttgacc ctgctcgcgc aggagagcgg cggctcttac tacaaggcga agaagttgtc
     1921 tgatctcgaa ggcgtctacg agcaagtgat taacgatctc ggcaagatct acagtttggg
     1981 atacaaaccg acaaacccgg agcgcgacgg cacgtggcgc aacgtgcgca tcacgatcgc
     2041 gaaccgtgag gatttggtga cccgcgcgcg tcccggctat tacgctcagt gattcaattc
     2101 attcgttaag gagtcccgat gatccgtcga agtctgactt tggccttgta catttgcctg
     2161 ctgtccgttc tgaatcccgt tccggctcag gtgcgcaagc gccccgttcg gaccacaact
     2221 ggtccaatac tcgaaaaaaa cattcgcgcg gagttgagtt ttttagcgag cgacgctttg
     2281 caggggcgag gcagtggcac tggttacgaa cgcatcgcgg cggaatacat cggttcgatg
     2341 tttagccagt ttggcctcga acccggaggc gatgcagacg cttcgggcgt gaagggtttc
     2401 gtgcagcgcg tgccgctcga gtcgtcgaag tttaccgagc cgccggcgtt cactgtcacc
     2461 gcgggaagca acacgcacaa gtggcagttt ggccgcgact ttctcgtctc gtttttacgc
     2521 gcgcacaaga tcagcggcga gctgcaggtg atcgaatctt ccggcgcgcc ggcaaagggt
     2581 gcggtcgttg tggttaagtt gccggaaaaa gctcacgcgg aacagcggcg ggccgtgata
     2641 atgagcgcgt tcggcgcggg agccgccgca gtggtgcttc cggaaacgga agcgaatcgc
     2701 aagacacgcg aagcgggcga cgcgcgtttg ccaacgttgc cgggaagagt ttctgctgct
     2761 ggtgaagtgc agtttgcggc gatctcattg ccacaggatg cgatcgacgt gctcgccggc
     2821 ttgcctgcgg gcgcgcgagc ggagtttggc gggaccaccg agcagtcgga cggtggcgcg
     2881 acgtggaacg tgatcggcgt catacgcgga accgatccga gcggcgaagc gatcatattg
     2941 agtgcgcatc tcgatcatct cggcgttaac gaacaggcca cgggtgacaa gatctacaac
     3001 ggcgctgatg acgacgcgtc gggttgtgtc gcggtgctgg aaatggcgcg cgtgctggca
     3061 gccggaaaga gaccgcgccg cacgatctat ttcatctgtt tcggcagcga ggaacgcggc
     3121 ggttacggcg cacgctattt cgtcgccaac tcgcccgtac cgctcgaaaa gatcgtcgcc
     3181 gatttcaact tcgaaatgct gggccggccg gacgacaaag tgccgccggg tgcgctttgg
     3241 ctgactggtt acgaacgatc gacgctcggg ccggaactcg tgcgacaggg cgcggcgctg
     3301 gtcaaggacc cacgtcccga acagaacttc tttcaacgtt cagacaacta cacgcttgcg
     3361 ctgcgaggtg tgattgcgca cacggtttcg agtttcaacc tgcacagtga ttatcaccgg
     3421 ccgagtgacg acgtcagcaa gatcgatttt ccgtttatga cgcgctcgat caattcgctg
     3481 gtgaagccga ttcagtggct ggcgaacacg actttcaaac cggcgtggtt gccgggacaa
     3541 gcgccgggtc gtccttaacg atcatgactg cgaaaccaaa attctttgcg acgccggaga
     3601 agtttcgcga gtggctggag aagaaccacg ctagcgagac tgaactgctg gtcgggtttc
     3661 acaagaaggg ctcggggaag aagagtatta cttacgcgga agcgttggac gaggcgctct
     3721 gttttggttg gatcgacggc gtgaagcgca gtcttaacga gacgagttac acgcaacggt
     3781 tcacgccgcg gcgcgcgcgg aggatttgga gtctggtcaa cgtgaagcac gtcgagcgtt
     3841 tgaagaaaga agggcggatg cacgcggcgg gggttgcggc gtacgagcag cgcgatccga
     3901 agcgcaccgg gatctatgct ttcgagaacg caccgcgcga attgtcggct gagtatgaga
     3961 agcagtttcg caaggtcaaa ggcgcgtggg aatactttca aacctatccg ccgtacttga
     4021 agaagaccgt atcgttttgg gtgatgagcg cgaagaaaga ggagacgcgt tcggcgcggc
     4081 tgcagcggct aatcgagagc tgcgcaagag gcgaacgcat cggggttcta acagcggaga
     4141 gcgccaaaaa cgcgagtaaa aaaccgtagg gggattggcg tcgcgaggta cggcgctttc
     4201 atattcaatc ggtgcgctga cttactggta aatcaatcgt gcctgatctg cttgtaaatc
     4261 tcctcaaact gcccgcaccg gaaagcggac cgctggaatt tctcgtgcgc cgggcgcagc
     4321 cgtttgagat tagcgcggtg cgttcgtttg tggcggagaa cttttcgcag agttgggcgg
     4381 atgagatctc ggtggggttt gcgcggcagc cgatctcggt ttttgttgct acgatggaac
     4441 gcgagctgat cgggttcgcg gcttacgagt gcacgcggcg cggcttcttt ggtccaatgg
     4501 gcgtcgtcga acgcgcgcac ggcaaaggcg ccggaaaagc tttgctgctc gccgcactgt
     4561 ggggtttgcg agagatgggt tacatctacg gcatcgtcgg cgccgccggc cccgttcgtt
     4621 tctatcaaaa gactgtcggc gcgatcgtca tccccgacag cgaacccgga atttacacag
     4681 atctgttgaa gagcaagcaa tgaactcgct gccgcctggg ccaaagggaa aactcatcac
     4741 cggtgtgatg cgcgagttca acaacgacac gctcggcttc atcgagcgtt gtcaacgcga
     4801 ctacggcgac gtcgtgcgct cgcgatttct ctacctttac gcctactttc tttacaaccc
     4861 cgcggacatc gaagcgctcc tcactaccaa cgcgaagagc tatcgcaaag cgcgttcgct
     4921 tcgttcgcct ttcttttatc ggctcgtcgg aaacgggctc gtcacgagcg agggagactt
     4981 ctggcggcgg caacggcgtc tggcgcaacc ggcgtttcac cggcaaagga tcagttcgta
     5041 cggcgacatc atggtccaat acgcggaccg cgccatctcg cagtggcgag acggcgaaca
     5101 gcgagacatc tcgcgcgaga tgacgcgcct cacgctcgag atcgtagtca agacactttt
     5161 caactccgac gtctccaacg acgccgatca catcggcgcg atgttgtcgc acatcgtgaa
     5221 accgtttgcg tcacaagcaa cgctgaagtg gatcgccgac aaccgtctgc cgacgccggg
     5281 tcactatcgc tacttcaacg ccgtgagcga gatcgacaag gtcgtgtttc gcatgattgg
     5341 cgagcgccgc gcgagcggtt cggacgaagg cg
//
LOCUS       DASWTX010000951         2830 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_121452, whole genome shotgun sequence.
ACCESSION   DASWTX010000951 DASWTX010000000
VERSION     DASWTX010000951.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2830
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121452"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            52..852
                     /locus_tag="VGD38_14430"
     CDS             52..852
                     /locus_tag="VGD38_14430"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY0729271.1"
                     /translation="MTVDRNGTFWRITAIARNAFREAVRDRVLYNLVLFVLLLTAAAI
                     FIGELSGGQERKIIVDLGLSAMLLFGVFIAIFVGVGLVYKEIERRTIYAIFSKPVGRG
                     EFLVGKYLGLCLTLLVNVVVMGLGISLALIYVSRGWDPLIVSLWPAVLLIYLELMILT
                     GVALLFSSFSSPALSALLTFFIFIIGHFSADLKSLSVSLGSTGARWLFTGLYYLLPNL
                     ANYSYITPTAHGRSPSAAFIASVGVYAMVYITVILAVATLVFSRRNFK"
     gene            860..1768
                     /locus_tag="VGD38_14435"
     CDS             860..1768
                     /locus_tag="VGD38_14435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729272.1"
                     /translation="MNDRTKTLSLALVVVIGMITAVMLSRFIDARCPAVDADAAADES
                     LYLNAKTAKRISLGFNGLAADWYWMRSLQYVGRKIMNFDESIPLDDLNQLNLKLLAPL
                     LENATTLDPEFLDPYEYAAVVLPAIDVNEAIRLTRKGIDANPNSWRLHQHLAYIYWQQ
                     HDYAAAAETYGRGAQLPGAPYWMEAMKARMAAEGGSRATAREIYKRMIEQSTDEKVKD
                     MARKRLMQLDSFDQRDLLRKLFAGYQARTGRCPEDWQEMGAVLRAVRAPLNPSGAPLD
                     PAGAPYVLQPGKCEVELSKESEIPFK"
     gene            1773..2690
                     /locus_tag="VGD38_14440"
     CDS             1773..2690
                     /locus_tag="VGD38_14440"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0729273.1"
                     /translation="MPAVEITNLTKDYEVGFWRKRKVRALDDLSLLIDEGQIFGFLGA
                     NGAGKTTTLKLLMRLIFPTAGSARILGHDIQDVRMHRRIGYLPENPYFYDYLTARELL
                     EYCAQLFGFPAPERRKRAADLLARVKLDEKRWDTQLRKFSKGMLQRVGLAQSLVNDPE
                     IVFLDEPMSGLDPVGRREVRDLIASLRGDGKTVFMCSHILSDIEVLCDRVAILKRGRL
                     AQVGALDELRQRRDDPHQMEVLATGADAATLKQYLPNGAITPTPSGLRIEIAAENEIE
                     GVLAALRKAGGKVVSVQPIKQSLEELFME"
BASE COUNT          570 a          830 c          796 g          634 t
ORIGIN      
        1 gtggcaaaaa ttttaatttc tgtgcacagc cgtgcaagtt atgattaact cgtgaccgtg
       61 gaccgcaacg gaacgttctg gcgcataact gctatagctc gtaacgcttt tcgcgaagca
      121 gtgcgcgatc gtgtgctcta caacctggtc ctgtttgtgc tgctgttaac cgccgccgcg
      181 atcttcatcg gcgagttgtc gggtggacag gaacgcaaga tcatcgtcga tctcggactc
      241 agcgcgatgc tgttgttcgg agtcttcatt gcgatctttg taggcgtggg tctcgtctac
      301 aaagagatcg aacgccgcac gatctacgcg atcttttcca agcccgtcgg ccgcggcgag
      361 tttctcgtcg gaaagtatct cgggttgtgt ttgacgttgc tggtgaacgt cgtcgtgatg
      421 ggactcggca tttcgctcgc gttgatctac gtgagccgtg gttgggatcc actcatcgtc
      481 agtctctggc cggcggtgct gttgatttac ctcgagctga tgatcctgac gggcgtggcg
      541 ctgctcttct cgtcgttctc ttctccggcg ctctccgcgc tgctgacgtt cttcatcttc
      601 atcatcggcc acttcagcgc cgatctgaaa tctctttccg tatcgctcgg aagcacgggc
      661 gcgcgctggt tattcaccgg gctttattac ttacttccga acctcgcaaa ctacagctac
      721 atcactccga ctgctcacgg gcgctcaccg tccgcggctt tcattgcttc cgtgggggtt
      781 tatgcgatgg tgtacatcac ggtcatcctc gctgtcgcaa ccctggtctt cagccggcga
      841 aacttcaaat agaagctgaa tgaacgaccg cacgaaaact ctcagtctcg cgctcgtcgt
      901 ggtgattgga atgatcaccg cggtgatgct gtcgcgcttt atcgacgcgc ggtgtccggc
      961 agtcgacgcc gacgcggccg cggacgagag tctttacctg aacgccaaaa ctgcgaaaag
     1021 aattagtctc ggcttcaacg gtttggccgc cgactggtac tggatgcgct cgctccaata
     1081 cgtcggccgc aagatcatga acttcgacga aagcattccc ctcgacgatc tgaatcagct
     1141 caatctgaaa ctgctcgcgc cgttactcga gaacgcaacg acactcgatc ccgagtttct
     1201 cgatccttac gaatacgctg ctgtagtcct gcccgcaatc gacgtgaacg aagcgatccg
     1261 gctcacgcga aaaggcatcg acgcgaatcc gaactcgtgg cggcttcatc aacatctcgc
     1321 ctacatctac tggcaacaac acgattacgc cgcggcagcg gagacttacg gccgcggcgc
     1381 acagttaccc ggcgcgccgt actggatgga agcgatgaaa gcgcgcatgg cggccgaagg
     1441 cggcagtcgc gcgaccgcgc gtgagatcta caagcgcatg atcgagcaat ccacggacga
     1501 gaaagtgaaa gacatggcgc gcaagcgttt gatgcagctc gattctttcg accaacgcga
     1561 tctactgcgc aagctgttcg ccggttatca agcgcgcacc ggccgttgtc ctgaagattg
     1621 gcaggagatg ggagcagtgt tgcgcgccgt ccgcgcgccg ctcaacccgt ccggcgcacc
     1681 actcgatccg gcaggcgcgc cttacgtgtt gcagcccggc aagtgtgaag ttgaactgag
     1741 caaggaaagc gaaatcccgt tcaagtaaga atatgcctgc agtcgagatt acaaacttaa
     1801 ccaaagacta cgaagtcggc ttctggcgca agcgcaaagt gcgcgcactc gacgacctct
     1861 cgcttttgat cgacgagggt cagattttcg gctttctcgg cgcgaacggc gcgggcaaaa
     1921 cgacaacgct gaagctcttg atgcgtctga tctttcccac cgccggcagc gctcgtattc
     1981 tcggtcacga tatccaggac gtgcgcatgc accgtcgcat cggttacctg cccgagaatc
     2041 cttacttcta cgattacctc acggcgcgcg aactactcga atactgcgcg caactgtttg
     2101 gctttcccgc ccccgaacga cgcaaacgcg ccgccgatct gcttgcgcga gtcaagctcg
     2161 acgaaaaacg ttgggacacg cagttgcgaa agttttccaa aggaatgctt cagcgcgtgg
     2221 gcctagccca gtcgctcgta aacgatcccg agatcgtctt tctcgacgag ccgatgagcg
     2281 ggctcgatcc cgtcggacgc agagaagtgc gcgatctgat cgcgtcgctg cgcggcgacg
     2341 gaaagacagt tttcatgtgt tcgcacattc tttccgacat cgaggtgctt tgcgatcgcg
     2401 tcgccattct caaacgcggc cggttggccc aggtcggcgc tctcgacgag ctgcggcagc
     2461 gtcgtgacga tccgcatcag atggaagtgc tggcgacggg cgccgatgct gcaacgttga
     2521 agcagtatct gcccaacggc gcgatcactc cgacgccgag cggtctgcga atcgagatcg
     2581 ccgccgagaa cgagatcgag ggtgtgctgg ctgctttgcg gaaagcgggc ggtaaggtcg
     2641 tgtcagttca accgatcaaa cagtcgctgg aagagctgtt catggaatag gtcctatagg
     2701 accaatagga cctattcttt gaacttcact gcgacgactt ccatcttgat gttcgcgcgg
     2761 tcgtcggtgt ctttcattcc ttccaacatc atcgtcactg gcatcgtctt gtttggcgcg
     2821 agctccggct
//
LOCUS       DASWTX010000952         3234 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_11187, whole genome shotgun sequence.
ACCESSION   DASWTX010000952 DASWTX010000000
VERSION     DASWTX010000952.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3234)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3234)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3234
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11187"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..907
                     /locus_tag="VGD38_14445"
     CDS             <1..907
                     /locus_tag="VGD38_14445"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HEY0729274.1"
                     /translation="AEFQVKAAEADSENLRVRLESETMTQKAAIATINSQYSQAKLQL
                     DTDEELAKKGLVADLPLKISRVAVQDLANRLKVEQERLTVNSKSTQAQLNAAASRLSQ
                     LRAMAKLRREQVDALKVRAGTPGVLQVVSVQVGQQVTPGLNIARVADPASLKAVLRIP
                     ETTIKDVRIGQTVLVDTRNGVIQGTVSRIDPAAREGTFEVDASLAGPLPASARPDLSV
                     DGTIELERLKDVLKLGRPAFGQANQTIGMFVLTADGSEAVRQPVRLGRNSVSTVEILD
                     GLKEGDKVIISDTSAQDSYNRIRLR"
     gene            981..1736
                     /locus_tag="VGD38_14450"
     CDS             981..1736
                     /locus_tag="VGD38_14450"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0729275.1"
                     /translation="MSSNGQPLIHLADVKKVFETDEVETHALTGIHLDIKQGEYVSIA
                     GPSGCGKSTLLSILGLLDTPSDGEYILNGHPVANLSLSERARIRNREVGFIFQSFNLI
                     GDLTVYENVELPLTYRGMSSADRRKRTTEALERVGMAHRAKHLPSQLSGGQQQRVAVA
                     RAVAGAPSILLADEPTGNLDSTNGEAVMELMRELHRTGATICMVTHDPRYAQHADRIV
                     HLFDGQIVEEEQGSERRELMERELKESGFGAIS"
     gene            1733..2419
                     /locus_tag="VGD38_14455"
     CDS             1733..2419
                     /locus_tag="VGD38_14455"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0729276.1"
                     /translation="MITLRGVEKAFPHGPTKTYVLRRVNLDIKPGEFVSIMGPSGAGK
                     STLLHILGMHDHSWTGEYYFDDVAVHQLDAKKRAALRNRNIGFVFQSYHLLDDQTVFE
                     NLELPLSYRDVSKKDRQSIVCDTLDRFQMVGKKDLFPTQLSGGQQQLVGIARAVVANP
                     RIILADEPTGNLHSAQGKEIMDMFKRLNDEGTTIVQVTHSETNAAYGNRIIQLEDGWI
                     VNGETFVQSV"
     gene            2504..>3234
                     /locus_tag="VGD38_14460"
     CDS             2504..>3234
                     /locus_tag="VGD38_14460"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0729277.1"
                     /translation="MDAFLNDVRYAFRNLIKRPAFTLIAAITLALGIGANTAIFSSFY
                     ALLLKPLPFSELNNVVAVWDSYPTRGVTRNEVAMANYLDWQSQNQSFEQLALYRWWSA
                     NLTGIDPPERIQAFLITANFLDAVGVKPSMGRNFTADENQPGKDAVAILTHGLWQRRF
                     GGDPNIVGKTITLDGTARTIVGVMPERFKYPSNAELYSPIAITPRMAGNRQFNTSYVV
                     GRLKPGASVQSAQADIDAITARLEQ"
BASE COUNT          747 a          954 c          907 g          626 t
ORIGIN      
        1 cgcggagttt caggtcaaag cggctgaggc cgactcggag aacctgcgcg tgcggctcga
       61 aagcgaaacc atgacgcaga aggctgcgat tgcgaccatt aactcgcagt acagccaggc
      121 caaactccag ctcgacactg acgaagagct cgccaagaaa ggtcttgtag cggatctgcc
      181 gttgaagatc tcgcgcgtcg cggtccagga tttggcgaac cggctcaaag tggaacagga
      241 acggcttacc gttaactcca agtcgaccca ggcccaactc aatgccgcag cttcgaggct
      301 gtcgcagttg cgggccatgg cgaaactccg acgcgaacag gtcgatgcgt tgaaagtgcg
      361 cgccggaacg ccgggcgtgc tgcaagtcgt gtccgtgcaa gtcggtcagc aggtgacgcc
      421 cggattgaac atcgcgcgcg ttgccgatcc ggcttcgttg aaagcggtgt tgagaattcc
      481 agagacgacg atcaaagacg ttcgcattgg gcaaacggtg ctcgtcgata cgcgcaacgg
      541 cgtgattcag ggaacggttt cccgtatcga tcccgcggcg cgcgagggca cgtttgaagt
      601 cgatgcttcg cttgccggac cgctgcccgc gagtgcgcgt cccgatctca gcgtcgatgg
      661 aacgatcgaa ctcgagcggt taaaggacgt gctaaagctt ggtcgtccgg catttggtca
      721 ggctaatcaa acgataggca tgtttgtgct gacggccgac ggctctgaag ccgttcgcca
      781 gccggtaagg ctcggacgca actcggtcag cacagtagag atattggacg gcttgaaaga
      841 aggagataag gtaatcatct ccgacacttc ggcgcaggat agttacaacc ggattcgact
      901 ccgctaatta gcgttataga aatcaatccg gtggtgttca atttacggat cactaaaaca
      961 aaaatctcaa ggagcgaact atgagttcca acgggcagcc cctaatccac cttgccgacg
     1021 tcaagaaagt gtttgaaacg gacgaggtcg agacacatgc actcaccggt attcacctcg
     1081 acatcaaaca aggtgaatac gtttccattg ccggcccttc gggctgcggc aagtcaactt
     1141 tgctttcgat cctgggcctg ttggatactc cgtcagacgg cgagtacatc ctcaacggtc
     1201 acccggtcgc aaacctttcc ctttccgaac gcgcgcgcat tcgcaaccgc gaggtcggat
     1261 tcatctttca aagcttcaac ctgatcggcg atctcaccgt ttacgaaaac gtcgaactgc
     1321 cgttgacgta tcgcggcatg agctcggccg atcgcaggaa gcgcaccact gaagccctcg
     1381 aaagagtcgg catggctcat cgtgcgaagc acttgcccag ccagctctcc ggcggtcaac
     1441 agcaacgtgt cgcggtcgcg cgcgcggtcg ccggggcgcc gagcatcctg ctcgcagacg
     1501 agccgaccgg aaacctcgac tccaccaacg gcgaagccgt gatggagtta atgcgcgagc
     1561 tgcatcgcac cggcgccacg atctgcatgg tgacgcacga tccacgctac gcacagcacg
     1621 ccgatcgcat cgtccacttg ttcgacggac agatcgtcga agaagaacag ggctccgagc
     1681 ggcgcgagct catggaacgc gaactgaaag aaagcggatt cggagccatt tcatgatcac
     1741 tctgcggggc gtcgaaaaag ctttccccca cggtccgaca aagacctacg tgctccgccg
     1801 ggtcaatctc gacatcaagc cgggtgagtt tgtttcgatc atgggtcctt cgggagcagg
     1861 gaagtcgact ctgctccaca tcctgggaat gcacgatcat tcatggaccg gcgagtatta
     1921 cttcgacgac gtggcggtcc atcagctcga cgcgaagaag cgcgcggcgt tgcggaatcg
     1981 aaacatcggg ttcgtcttcc agagttatca cctgctggac gatcaaaccg ttttcgaaaa
     2041 cctcgagttg cctttgtctt atcgcgacgt gagtaagaag gatcggcagt cgatcgtttg
     2101 cgacacgctc gatcggtttc agatggtggg caagaaagac ttgtttccca cgcagttgtc
     2161 aggtggtcaa caacagctcg tcggcatcgc gcgcgcagtg gttgcgaatc cgcgaatcat
     2221 cctggctgac gagccgaccg gaaacctgca ctcggcccag ggcaaagaga tcatggatat
     2281 gttcaagcgc ctgaatgacg aagggacgac gatcgttcag gtgacgcact cggaaaccaa
     2341 cgcagcctac ggcaaccgga tcatccagtt ggaagatggc tggatcgtta atggcgagac
     2401 attcgtgcaa tccgtgtaac acggattcac acagagtcta atcccaaatt caaacctgta
     2461 gttgctctct acgtcaccag tgtgtctacg ggcaggagga actatggatg cctttctgaa
     2521 cgacgttcgt tacgctttcc gtaacctcat caagcggccg gccttcacac tcatcgctgc
     2581 catcactctc gcgctcggca tcggagccaa caccgcgatc ttcagttcct tctacgcgct
     2641 gttgctcaag cctctgccat tttccgaact caacaacgtc gtcgccgtgt gggactcgta
     2701 tccgacccgc ggtgtgacgc gcaacgaagt ggcgatggcc aattatctcg actggcaatc
     2761 gcagaaccaa tcgttcgaac aactcgcgtt gtatcgctgg tggagcgcaa acctgaccgg
     2821 catcgatcct cccgaacgga ttcaggcttt tctgatcacg gcaaattttc tcgacgccgt
     2881 cggcgtcaag ccgagcatgg gccgcaactt cacggccgat gaaaaccaac ccggcaaaga
     2941 cgcggtcgcg attctcacac acggtttgtg gcaacgacgc ttcggcggcg atcccaacat
     3001 cgtcggcaag acgatcacgc tcgacggtac tgcacgcacc atcgtcggcg tcatgcccga
     3061 acgattcaaa tacccgtcca acgccgagct ctacagcccg atcgcgatca cgccgagaat
     3121 ggcgggcaac cggcagttca acacctccta cgtggtcgga cgtttgaaac ccggagcgtc
     3181 ggtccaaagc gcgcaagccg acatcgacgc catcacggca cgactcgagc aaca
//
LOCUS       DASWTX010000953         2330 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_230389, whole genome shotgun sequence.
ACCESSION   DASWTX010000953 DASWTX010000000
VERSION     DASWTX010000953.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2330
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230389"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1540)
                     /gene="uvrB"
                     /locus_tag="VGD38_14465"
     CDS             complement(<1..1540)
                     /gene="uvrB"
                     /locus_tag="VGD38_14465"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: protein motif:HMM:NF003673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HEY0729278.1"
                     /translation="MRFKLHSEYQPKGDQPAAIDALVRGLNDGAKDQVLLGITGSGKT
                     FTIASVIERVQRSTLVLAHNKTLAAQLFQEFRTLFPENAVEYFVSYYDYYQPEAYVPA
                     ADVYIEKEAIVNEEIDRLRMSATRALFERRDVIVVASVSCIYGLGDPDAYYGLLFFIE
                     PGGRMSRDVLLQRLVELQYERSDVNFQRGTFRVRGDVVEIYPSYQDLAYRIELWGDEI
                     DSISTIDPLLGEVVEKHTSRVPIYPKTHYVMSRPTIKRAIKTIKEELEWWEPKLIAEG
                     KLVEAQRLHQRTMFDLEMIKEMGFCRGIENYSRHLTGKNPGEPPPTLLDYLPRDTLIV
                     IDESHQSVPQVRGMFEGDQSRKRTLVEYGFRLPSALDNRPLNFKEFEARIGQTIYVSA
                     TPGPYELTKASGEVIEQIIRPTGLMDPEVEVRPVKGQIDHLLEECRQRAEQRERVLVT
                     TLTKRMAEDLTEYFTEVGVRVRYLHSDIETLERIEILRDLRLGAFDVLVGINLLREGL
                     DIPEC"
     gene            complement(1593..2171)
                     /locus_tag="VGD38_14470"
     CDS             complement(1593..2171)
                     /locus_tag="VGD38_14470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729279.1"
                     /translation="MSSRDERWRADVATLRQAAEELVRRRDLAKPNPPRPIDYPFDEI
                     AQALDDPSPEVRQKAVRELYELDPDQAATLVNDALRVGTPEERRRIGTALADSGLLYE
                     AIDDLMGENHESCYGAFSLLFLVAKAGVVEPLTTVIEKNPSPDLSLAIIRLLASSGEP
                     EVGPALQKLAADPALAPELRSAAADAVAHLIV"
BASE COUNT          471 a          705 c          671 g          483 t
ORIGIN      
        1 cgcattcggg gatgtcgagg ccctcgcgca gcaggttgat gccgaccagc acgtcgaagg
       61 cgccgagccg caggtcgcgc aggatctcga tgcgctcgag cgtctcgatg tcggagtgca
      121 aatagcgaac gcgcacgccg acttccgtga aatactcggt caagtcttcg gccatgcgtt
      181 tcgtcaacgt agtaaccagt acacgttcac gttgctcggc acgctggcgg cactcttcca
      241 gcaaatgatc gatctggcct ttcaccgggc gcacttcgac ttccgggtcc atcaagcccg
      301 tcgggcgaat gatctgttcg attacttcac cgctcgcctt tgttagttca taaggcccgg
      361 gcgtcgcgga cacgtaaatc gtttgcccga tccgcgcttc gaactctttg aagttcaacg
      421 gccgattatc gagcgccgac ggcaatctga atccgtattc aaccaacgtt cgcttgcggg
      481 attgatcccc ctcaaacatc ccacgcacct gcggcaccga ctggtgcgac tcgtctatca
      541 cgatcagcgt gtcgcgcggc aggtagtcga gcaacgtcgg cggcggctcg cccgggttct
      601 tgccggtcag gtgtcgtgaa tagttttcga tgccgcggca gaaacccatc tccttgatca
      661 tttcgagatc gaacatcgtg cgctggtgca gccgttgcgc ttccaccagc ttgccctcgg
      721 cgatcagctt cggttcccac cactcgagct cttccttgat cgtcttgatg gcgcgcttaa
      781 tagtgggacg cgacatcacg tagtgcgtct tcggatagat cggcacgcgt gacgtgtgct
      841 tttccaccac ctcgccgagc aaaggatcaa tggtcgagat cgagtcgatc tcgtcgcccc
      901 acaactcgat tcgataagcc agatcctgat aactcggata aatctccacc acatcgccgc
      961 gcacgcgaaa cgtgccgcgc tgaaagttga cgtcggagcg ttcgtactgc aactcgacca
     1021 aacgctgcag caacacatcg cgcgacatgc gcccgccggg ttcgatgaag aacagcaaac
     1081 cgtaatacgc atccggatcg ccgagaccgt aaatgcacga gacactcgct accacgatca
     1141 cgtcgcggcg ctcgaacagc gcgcgcgtcg ccgacatccg caagcgatcg atctcttcgt
     1201 taacgatcgc ttctttttcg atgtagacgt cggctgccgg aacgtacgct tccggttggt
     1261 agtagtcgta ataagagacg aagtattcga cggcgttctc gggaaagagt gtgcgaaatt
     1321 cctgaaacag ttgcgccgcg agcgtcttgt tgtgcgccag cacgagcgtc gagcgttgga
     1381 cgcgttcgat gacgctggca atggtaaacg tcttgccgct gccagtgatg ccgagcagca
     1441 cctgatcttt cgcgccgtcg ttgagaccac gcacgagcgc gtcgatcgcg gcgggctgat
     1501 cacccttcgg ttggtattca gaatggagtt tgaagcgcat gtgaaaacta caatagtagg
     1561 acacacgtca atccctgtcg aagggtgcgc ttttagacga ttaaatgcgc gaccgcgtcg
     1621 gcggcggcgg agcggagttc gggggcgagg gcggggtcgg cggcgagttt ttgcagagca
     1681 ggcccgactt ccggttcgcc gctcgaggcg agcagacgaa tgatggcgag gcttagatcc
     1741 gggctcgggt tcttttcaat caccgtggtc agcggctcaa ccacgcccgc tttcgcgacc
     1801 agaaacaaca acgagaaagc accgtaacaa ctctcgtggt tctcgcccat gaggtcgtcg
     1861 atcgcttcgt acagcagacc actatcagcg agtgcggtgc cgatgcggcg acgctcctcc
     1921 ggcgtaccaa cacgcagcgc gtcgttgacg agcgtcgcgg cctgatccgg atcgagttcg
     1981 tagagttcgc gaacggcttt ctggcggact tcgggtgaag gatcgtcgag cgcttgcgca
     2041 atctcgtcaa acgggtagtc gatcggcctg ggagggttcg gtttcgccag gtcacgacgc
     2101 cgcactaact cctcagcagc ctgacgcaag gtagccacgt ccgcccgcca acgctcgtcc
     2161 ctgctactca ttcgacattg atcacttcac ccggtgacgc gccagccact agggtaagcg
     2221 gggcagacgg ctcgacgaac acggattcag aatcagtcgc gcgatccgtg ctgtccgtct
     2281 tattcgcggt taataaaagc tggaacttct tcaacaccaa ccggcttacc
//
LOCUS       DASWTX010000954         2660 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_206526, whole genome shotgun sequence.
ACCESSION   DASWTX010000954 DASWTX010000000
VERSION     DASWTX010000954.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2660)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2660)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2660
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206526"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..658)
                     /locus_tag="VGD38_14475"
     CDS             complement(<1..658)
                     /locus_tag="VGD38_14475"
                     /inference="COORDINATES: protein motif:HMM:NF024912.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729280.1"
                     /translation="MCGINGIAFSSQSGRQVDAAVLKRMRDVITHRGPDDEGIFVDDR
                     VGLGHRRLSIVDVAAGHQPMTNEDGSLHITYNGEIYNHADYREPLIARGHVYKTHCDT
                     ETILHLYAEYGDDCVDRLRGMFAFAIWDRNKRELFIARDRLGVKPLYYVHTQDGSLYF
                     ASEIKALLEARAVKPELNFRAFSDYLANHSTSGEETLFVGVKRLLPGHTLRWRDGEIK
                     I"
     gene            complement(645..>2660)
                     /locus_tag="VGD38_14480"
     CDS             complement(645..>2660)
                     /locus_tag="VGD38_14480"
                     /inference="COORDINATES: protein motif:HMM:NF028199.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alginate lyase family protein"
                     /protein_id="HEY0729281.1"
                     /translation="ETLSEFRRRWPEAEPGILGIADRIAEGTFNLLGLRELKLGESID
                     WHLEPLSGKRTPLVHWSQLNYLDAEVAGDKKVTWELNRHQYFLTLGRAYWLSGDERYA
                     QVVVSHVTSWMNENPPKLGINWASSLEISFRSISWLWSLQFFADSPSLNADVLLRMLK
                     FLYLNASHLETYLSTYFSPNTHLTGEALGLFYIGLLLPEFRDAARWRDLGLEILESQL
                     SRHVQPDGVYFEQSSYYHRYTADFYIHLAILLRRNGMKLPDALEPKLELLLDHLMYIT
                     RPDGTTPFFGDDDGGRLVMLDERPANDFRAVLSTGAVLFNRGDYKFVAGEAAEETLWL
                     LGAEGLRAFDGLASEEPLEESVAFADGGYYVMRDGWSPTSNYLLFDCGPHGWANCGHA
                     HADALSIEVAANGITALVDPGTFTYTGGKELRDWFRGSTAHNTVTVDGQSSSLPLDTF
                     SWKTKTACECLAWIEHERFTYVSGRHNGYEQLAKPGTHTRSILFLKNDYWVLQDRLDL
                     SGKHKVEQWFHFDANPSTELLEIVSFGENGAWATEEGWVSHCYAERTPAPVRVFSASA
                     DGDFEITTFLLPKSATGSVVEQTPVTGGRGFEIRNEQSRDIVLVRDRGAELAKMASWV
                     SDFDCVWMRFVEGASVPSEMVLLGKGRLELAGGEIVESSEQFLYVRN"
BASE COUNT          549 a          783 c          790 g          538 t
ORIGIN      
        1 tgatcttgat ctcgccgtcg cgccaacgca gcgtgtgccc cggcagcaat cgcttcacgc
       61 cgacaaaaag cgtctcttca cccgacgtcg aatggttcgc gaggtaatcg gaaaacgcgc
      121 ggaagtttaa ttccggtttc actgcgcgcg cttcgagcag cgccttaatc tcggaagcga
      181 aataaagcga accgtcttgc gtgtgaacgt agtaaagcgg cttcacgccc aggcgatcgc
      241 gcgcgatgaa cagctcgcgt ttgtttcgat cccagatcgc gaacgcgaac atgccgcgca
      301 ggcgatcgac gcaatcgtcg ccgtactcgg cgtagagatg caggatcgtt tcggtgtcgc
      361 agtgtgtttt gtagacgtgt ccgcgggcga tcagcggctc gcggtaatcg gcgtggttgt
      421 agatctcgcc gttgtaggtg atgtgcagcg aaccgtcttc attcgtcatc ggctggtggc
      481 cggcggcgac gtcgacgatg ctgagacgcc ggtggcccag gccgacgcgg tcgtcgacga
      541 aaatgccctc gtcgtcgggg ccgcgatgcg tgatgacgtc acgcatgcgt ttgagcacag
      601 ccgcatcgac ctgacggcct gactggcttg aaaacgcgat tccgttaatt ccgcacatat
      661 aaaaattgct cagacgactc tacaatctcg ccgcctgcaa gctccagccg gcccttaccg
      721 agcagcacca tctcactggg aactgaggcc ccctcgacaa accgcatcca gacgcagtcg
      781 aagtctgaaa cccacgatgc catttttgca agctccgcgc cacggtcgcg aaccaggaca
      841 atatcgcgcg actgctcgtt tctaatttca aaaccgcggc cgccggtgac cggcgtctgc
      901 tccaccactg agccagtagc gctcttcggc agtagaaagg tcgtgatttc aaagtcgccg
      961 tccgcgctgg ccgaaaatac gcggacgggc gcgggcgtcc tttctgcata acagtgtgaa
     1021 acccagcctt cttccgtcgc ccacgcgccg ttttcgccga aactgacgat ttcgagcagc
     1081 tcggtggagg gattggcgtc gaagtgaaac cactgctcta ccttgtgttt tccggataaa
     1141 tcgagccgat cttgtaaaac ccaatagtcg tttttcagaa acaggatgct gcgcgtgtgc
     1201 gtgccgggtt tggcgagttg ttcgtaaccg ttgtggcggc cggagacgta ggtgaaccgc
     1261 tcgtgttcga tccacgcgag acactcgcag gcggtcttcg tcttccagga aaaggtgtct
     1321 agcggtagcg atgaggactg gccatcgacg gtgacggtgt tgtgcgcggt cgagccgcga
     1381 aaccagtcgc gcagttcttt gccgcctgtg taagtgaacg ttcccggatc gacgagagca
     1441 gttatgccat tggctgcaac ctctatcgag agcgcgtcgg cgtgcgcgtg gccgcagttg
     1501 gcccagccgt gtgggccgca atcgaagagc aaataatttg aagttggcga ccagccgtcg
     1561 cgcatgacgt agtaaccgcc atcggcaaac gccaccgatt cttccagcgg ctcttcgctc
     1621 gccaaaccat caaacgcgcg caggccctcc gcgccgagca gccacaaggt ttcttccgct
     1681 gcttcacccg cgacgaattt gtagtctcct cgattgaaga gcaccgcgcc ggttgaaagc
     1741 accgcacgaa aatcatttgc cgggcgctcg tccagcatca cgagccggcc gccgtcgtcg
     1801 tcgccgaaga acggcgtcgt gccgtcaggg cgcgtgatgt acatcaagtg gtccaacagc
     1861 aattcgagct tgggttcgag cgcgtcgggc agcttcatgc cgttgcggcg aagcaagatc
     1921 gcgaggtgga tgtaaaagtc cgcggtgtag cggtggtagt aactcgactg ttcgaaatac
     1981 acgccgtcgg gctgcacgtg ccgcgacagt tgcgattcga ggatctcaag accgaggtcg
     2041 cgccagcgcg ccgcgtcgcg aaactccggc agcaacaatc cgatgtaaaa aagcccgaga
     2101 gcttcgcccg tgaggtgtgt gttggggctg aagtaggtcg agagatacgt ttccaggtgc
     2161 gatgcgttga ggtagagaaa cttcagcatt cgcaacagca cgtcagcgtt gagacttggg
     2221 ctgtcggcga aaaactgaag cgaccagagc cacgagatcg atcgaaacga gatttccagg
     2281 ctgctggccc agttaatacc gagcttcggc gggttctcgt tcatccacga tgtgacatgc
     2341 gacacgacga cctgcgcgta gcgttcgtcg ccacttagcc aataggcgcg gcccagtgtc
     2401 agaaaatact ggtgccgatt cagttcccac gtgactttct tgtcgcccgc gacttcggcg
     2461 tcgagatagt tgagctggct ccagtggacc agcggtgtgc gtttaccgga gagcggttcg
     2521 aggtgccagt cgatcgactc gccgagcttg agctcacgca acccaagtaa attaaacgtt
     2581 ccctccgcaa tcctgtcggc aatccccaaa atccccggct ctgcttccgg ccagcgacgg
     2641 cgaaactcgg acagcgtctc
//
LOCUS       DASWTX010000955         2144 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_366032, whole genome shotgun sequence.
ACCESSION   DASWTX010000955 DASWTX010000000
VERSION     DASWTX010000955.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_366032"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1191
                     /locus_tag="VGD38_14485"
     CDS             <1..1191
                     /locus_tag="VGD38_14485"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY0729282.1"
                     /translation="QPVGHLTEWSSGPFAATIRDDKLYARGAANSKGDLIARLAAVEA
                     YQKTFGKLPVTLRFLIEGEDGLGSPSLYSFTSEHADLLKADGCLWDEGGRDTKETPVV
                     SLGFKGITFLELRAFGARSDLHSKWGTIVPNPAWRLVQALATITSPKGVITIDGFSSH
                     VAPISDEDAEALKTIELDEAGLKREFRIGGWVRSMKGQTLIKEHIFGPTCTICGIHTG
                     HTEAGAKTVLPSTAMARLDFRLVPDLTAEIVVGLLREHLDVRGFRDIEIIELGSAPLA
                     KSPAKSRIARAVVESMAEVYGRPAIVYPMDPSSGPVGAVCGVSTPPTPVASFGTEYAG
                     SNPHGPDENIRIDDFMKSIKLVGRVLHKLAETKSKHTLQSSVYEDNNPTAPLPRTKHA
                     EKKE"
     gene            1195..>2144
                     /gene="ligA"
                     /locus_tag="VGD38_14490"
     CDS             1195..>2144
                     /gene="ligA"
                     /locus_tag="VGD38_14490"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF013790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEY0729283.1"
                     /translation="MAAKATAREIEKLRQEIRRNDELYYVNNAPEISDREYDELLERL
                     QKLEQANPDLITPDSPTQRVGGRPAEGFPEVVHSRQMLSLDNSYNIDELRAFDERCRK
                     LAEGRPLDYVAELKIDGLSLSLQYADGLLVRGVTRGDGRIGEDVTQNAKTIRTVPLRL
                     KSDVKVIDTNIEVRGEVFIPRDVFEKTNAEREEAGEPRFANPRNAAAGAIRQLDSRLV
                     ARRKLDMFVYDLFAGGGRKPFATHWKALEWLQAAGFRVNPHRKVCTTIDEVIDFANEK
                     EALRDDLGYEIDGLVVKVNSTALQDEFGATAKAPRWALAY"
BASE COUNT          459 a          595 c          684 g          406 t
ORIGIN      
        1 cagccagtgg gccacctcac ggaatggagc tctggtccat tcgcggccac aatccgggac
       61 gacaagttat acgcacgcgg cgccgccaac agcaaaggcg atctcatcgc gcgtctcgcc
      121 gcggttgaag cctatcaaaa gacgtttggc aaactgccgg tcacgctgcg ttttctgatc
      181 gaaggagaag acgggctcgg cagcccgagt ctttatagtt tcacgagcga gcacgccgac
      241 cttttgaaag ccgacggctg cttgtgggac gaaggcgggc gcgacacgaa agagaccccg
      301 gtcgtgagtc tcggtttcaa aggcatcact tttctcgaac tgcgcgcgtt cggcgcgcgt
      361 tcggatttgc actcgaagtg gggaacgatt gtgcccaatc ccgcgtggcg gctggtgcag
      421 gcgctcgcca cgatcacatc acccaaaggc gttatcacga tcgacggttt ttcgtcgcac
      481 gtcgcgccga tcagcgatga agacgcggaa gcgttgaaga cgatcgagct cgacgaagcg
      541 ggactgaaac gcgagtttcg catcggcggc tgggtgcggt cgatgaaggg ccagacgctg
      601 atcaaggaac atatctttgg tccaacctgc acgatctgcg gtattcacac gggccacact
      661 gaagcgggtg caaaaacggt gttgccgagt acggcgatgg cgcgtctcga tttccggctc
      721 gtgccggatt tgacggccga gatcgtcgtc gggcttttgc gcgaacatct cgacgtgcgg
      781 ggtttcagag acatcgagat catcgagctc ggaagcgcgc cactcgcgaa gtcgccggcg
      841 aagtcgcgca tcgcgcgcgc ggtggtggag tcgatggcgg aagtttacgg ccggccggcg
      901 atcgtttatc cgatggatcc gtcgagtgga ccagtcggcg cggtttgcgg tgtatcgacg
      961 ccgccaactc cggtcgcttc gtttggcacc gagtacgccg gatcgaatcc gcacggaccc
     1021 gacgagaaca tccgtatcga cgactttatg aaaagcatca agctcgtcgg gcgggtgctg
     1081 cacaaactgg cggagacgaa gtcgaagcac acgctgcagt cgtcagtgta cgaagacaac
     1141 aatccgaccg cgccgctgcc gcgcacaaaa cacgcagaaa agaaggagtg acttttggcc
     1201 gcgaaggcaa ccgcacgcga gatcgagaaa ttgcgacagg agattcgacg taacgacgaa
     1261 ctttattacg tcaacaacgc cccggagatc tccgatcgcg aatacgacga actgctcgaa
     1321 cgtttacaaa aactcgagca ggccaatcct gacttaatca cgcctgacag tccgacgcag
     1381 cgagttggcg gccggcccgc cgagggtttt cccgaagtgg tccacagccg gcagatgctc
     1441 tcgctcgaca atagttacaa catcgacgag ctccgcgcgt ttgacgagcg ctgccgaaaa
     1501 ctggccgagg gccgcccgct tgattacgtc gccgagctta agatcgacgg tctttctttg
     1561 tcgctgcaat atgcggatgg tctgctggtg cgcggtgtta cgcgtggcga tggacgcatc
     1621 ggcgaagacg tgacgcagaa cgcgaagacg attcgcaccg tgccgctgcg tctcaagagc
     1681 gatgtgaaag tgatcgacac aaacatcgag gtgcgtggcg aggtttttat tccgcgtgat
     1741 gtgtttgaga agacgaacgc ggaacgtgag gaagcgggtg agccgcggtt tgcgaatccg
     1801 cgcaacgcgg cggcgggagc gatccggcaa ctcgattcgc ggcttgtggc gcggcgcaag
     1861 ctcgacatgt ttgtttacga cctgtttgcc ggtggtgggc gcaagccgtt tgcgacgcac
     1921 tggaaggctc tcgagtggct tcaggctgcg ggctttcgcg tgaatccgca tcgcaaggtt
     1981 tgcacgacga tcgatgaagt catcgacttc gcaaacgaga aagaggcgct tcgcgacgac
     2041 ctcggttacg aaatcgacgg cctcgtggtg aaggttaatt ccactgcgtt gcaggatgag
     2101 tttggcgcga cggcgaaagc gccgcgttgg gctctcgctt acaa
//
LOCUS       DASWTX010000956         2047 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_206572, whole genome shotgun sequence.
ACCESSION   DASWTX010000956 DASWTX010000000
VERSION     DASWTX010000956.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2047
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206572"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..500)
                     /locus_tag="VGD38_14495"
     CDS             complement(<1..500)
                     /locus_tag="VGD38_14495"
                     /inference="COORDINATES: protein motif:HMM:NF012581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HEY0729284.1"
                     /translation="MMPIINWSLIAPEVIVCAAAVIVMLIDAFSRPAQRWITGGVSLA
                     GLIIAGIACVLLWANGTPAADAFNGMIVLDELRLGFTLIFLLVSALTLLLSTVWAENE
                     QLPAGEFHSLLLFATVGMMLMASGNDLVIIFLGLEILSIATYVLAGFRRTDIRSNESS
                     LKYFILG"
     gene            complement(497..>2047)
                     /locus_tag="VGD38_14500"
     CDS             complement(497..>2047)
                     /locus_tag="VGD38_14500"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEY0729285.1"
                     /translation="LLTILILLPFAGALAMVLYNFAPPRKDEHYRWIALIATVATFVV
                     SLLLLRGAGATGAEFRFEENVNWIGSIGARYHLGVDGASMWLVLLTTLLMPIAILSSW
                     TAISKRPLAYYAFLLILESAMIGVFVSLDLLLFYLFFEASLVPMFFLIGIWGGERRIY
                     AAIKFFIYTAVGSLLMLVGIIALYFLYNTFDYPTLLGAMRASPLAPRAETLLFGAFAL
                     AFFIKVPLWPFHTWLPDAHTEAPTAGSVILAGVLLKMGTYGLLRFNLALFPNASRWWA
                     LPIIVLAVIGIIYGALVAMVQPDVKRLVAYSSVSHMGFVVLGLFSFTELGMQGALYQM
                     LNHGVSTGALFLFVGFIYERRHTRTISEFGGLSTPMPWFATLFVFASLSSIGLPFLNG
                     FVGEFFILIGMWTSTAVGHPWIVTMLAATGVIWAAVYMLWMLQRVLFGEVTNPENAKL
                     TDLNTRELGLLLPLLFLMLFMGVYPRVFLDRTLPSVAAIRERVIRSEAGGEFTTSAAE
                     LERGEPQR"
BASE COUNT          538 a          617 c          576 g          316 t
ORIGIN      
        1 ccgagaatga agtacttcaa agacgattcg ttcgaacgaa tgtcggtgcg gcggaagccc
       61 gcaagcacgt aagtggcaat cgagagaatc tcgagaccga ggaaaatgat cacgagatcg
      121 ttacccgaag ccatcagcat catgccgact gtggcaaaca ggagtaacga gtgaaattca
      181 ccagccggga gttgttcgtt ttcggcccac acggtcgaaa gcaacagcgt aagcgcggaa
      241 acgagcagga agatgagcgt gaagccgaga cgcagttcgt cgagcacgat catgccgttg
      301 aaagcgtcgg ctgcgggcgt tccgtttgcc caaagcaaaa cacacgcgat accggcgatg
      361 atcagtccgg caagtgaaac gccgcccgtg atccagcgtt gcgccggacg cgagaaggcg
      421 tcgatcaaca tcacgatgac ggccgcggcg caaacgatca cctcgggcgc gattaacgac
      481 cagttgataa tgggcatcat cgctgcggct cgcccctctc cagttcggca gcggaggtgg
      541 tgaactctcc accggcttca gacctgataa cgcgctcgcg aatcgccgcc acactcggca
      601 gcgtccgatc gagaaacact cgtggataaa ctcccatgaa cagcatcaga aacagtagcg
      661 gcaacaacag tcccaattcg cgcgtgttca gatccgtcaa ttttgcattc tccggattcg
      721 tgacttcgcc aaacaacaca cgctgcaaca tccacaacat gtaaaccgcg gcccaaatga
      781 cgcccgtcgc ggcgagcatc gtcacgatcc acggatggcc gaccgcagtc gaagtccaca
      841 ttccgatcag gatgaagaac tcaccgacga agccgttcaa aaacggcaga cctatcgacg
      901 acagcgacgc gaacacaaac aatgtcgcaa accacggcat gggcgtcgat aacccgccaa
      961 actcgctgat cgtgcgcgtg tgccgccgct cgtagatgaa gccgacaaaa aggaacagcg
     1021 cgccggtcga gacgccgtga ttcagcatct ggtaaagcgc gccctgcatg ccgagctcgg
     1081 taaacgagaa cagtccgagc acgacgaatc ccatgtgact gaccgacgaa tacgcgacga
     1141 ggcgtttgac gtcaggctgg accatggcga ccagcgcgcc gtagatgatt ccgatcaccg
     1201 cgagcacgat gatgggcagt gcccaccacc gcgacgcatt cggaaacagc gccaggttga
     1261 agcgcagcaa tccgtaagtt cccatcttca gcaacacgcc ggcaagaatc accgaaccgg
     1321 ctgtgggcgc ttcggtatgc gcgtcgggca gccaggtgtg gaacggccag agtggcacct
     1381 tgataaagaa cgcgagtgcg aacgcgccga acagaagcgt ttccgcccgc ggcgctaaag
     1441 gactcgcacg catcgctccg agcagcgtcg gatagtcgaa cgtgttgtaa aggaaataaa
     1501 gcgcgatgat gccgaccagc atcaacaaac tgccgactgc ggtgtaaatg aaaaacttga
     1561 tcgccgcgta gatgcgccgc tcgccgcccc agattccgat caggaagaac atcggcacca
     1621 gcgacgcttc gaagaacaag tagaacagca gcagatcgag cgagacaaac acgccgatca
     1681 tcgccgactc cagtatcaac agaaacgcgt agtaggcgag cgggcgtttg ctgattgcgg
     1741 tccaactcga cagtatcgcg atcggcatca agagcgtcgt cagcaacacg agccacatgc
     1801 tcgcgccgtc gacgccgagg tgataacgcg cgcctatcga accgatccag ttgacgttct
     1861 cttcaaacct gaactccgcg cccgtcgcgc ccgcgccgcg cagcaacaac agcgaaacga
     1921 cgaacgtcgc gactgttgct atcagcgcga tccagcggta gtgctcgtcc tttcgcggcg
     1981 gcgcaaaatt gtagagcacc atcgcgagtg cgcccgcgaa cggcaacagg atcaggatcg
     2041 ttaacaa
//
LOCUS       DASWTX010000957         3632 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_121634, whole genome shotgun sequence.
ACCESSION   DASWTX010000957 DASWTX010000000
VERSION     DASWTX010000957.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3632
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121634"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..405)
                     /locus_tag="VGD38_14505"
     CDS             complement(<1..405)
                     /locus_tag="VGD38_14505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729286.1"
                     /translation="MKNTLPAVDRLGMPIVTSGQFAYVYKLKSTNGHGDFAVRCFRGY
                     LGDRDQRYLAIQEHVQSLPVLCLSDFRYAPEGILVGGQRYPILFMKWIEGPTLDLYVG
                     EMLHRRDVLLHLADEWLRVVSALEASGVAHGDL"
     gene            complement(513..1277)
                     /locus_tag="VGD38_14510"
     CDS             complement(513..1277)
                     /locus_tag="VGD38_14510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729287.1"
                     /translation="MSSVKQSAGWELRTQQVLLPKSGFEASECEDFIGINEQTGRFAV
                     ADGATEAFDARNWAQRLAENWVRSESALTSETFHDWVAGEGAALHSAWSQLTLPWYAE
                     EKARKGSFAAFVGVELDLHSDAPAWKAIALGDACLFHCRAGALLKSLPVSSSAAFNSA
                     PLLVASDPVIHKTSADSLVVDSGRCQPNDILFLLSDAAAAWYLERFERNDFSDILRDN
                     DEPDAAKFFENERVAGRIRNDDIAVIRLEIQQRSTS"
     gene            complement(1274..2143)
                     /locus_tag="VGD38_14515"
     CDS             complement(1274..2143)
                     /locus_tag="VGD38_14515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="vWA domain-containing protein"
                     /protein_id="HEY0729288.1"
                     /translation="MYSAQITRANPTCVVLLIDQSASMSDPFSGDSARKKADFVAEVV
                     NHTLHDLVIRCTKTEEVRNYYHVAVLGYGRQVWSAFAGPLASREIIPIADVADHPLQI
                     KSSYKRVSDGASGWVEIPVRFPVWIHPTADGKTPMCDALTRVKQLLERWLSQHPRGFP
                     PTVLHLTDGESSDGEPFDIGQQIMSLGTDDGNVLLFNCHISSRRAAKVEYPSDESHLP
                     DGFARTLYKISSPLPHSFLAAAAQLGVHTVEGSRGFVFNGDPSSIVQFYEIGTSLTGM
                     TPYRWMDEITEPE"
     gene            complement(2151..2942)
                     /locus_tag="VGD38_14520"
     CDS             complement(2151..2942)
                     /locus_tag="VGD38_14520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729289.1"
                     /translation="MQPTFESQVQPQEWQPLVDPDQIVPRIKPFGVDTVIRDTLSIFT
                     QNFWLITRIVVVIVSPLQIFRALNLPEASGSWELMTWSFLLGAAAEVLMAPALIYALM
                     KVLQTGETPSVHESYRWGINKLVKLAVCAGIAGLLTLLGYALCIIPGIIASLSFAVVY
                     PVAILEKGSVSEVFARSMEMTRGNRLQILGAWIVLGLIIAIPSLGIGFVLGSAAELSS
                     LWPLMVVTSIAGDILGQSLTVMSLVIYLGLPRNASIRGHSVLSLE"
     gene            3209..>3632
                     /locus_tag="VGD38_14525"
     CDS             3209..>3632
                     /locus_tag="VGD38_14525"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY0729290.1"
                     /translation="MSEKKRTPESEQASHATEARFRQAFDNAPIGMAVIDFNFRFRRV
                     NAALCRALDYTPAELLQQRLADITHADDVSRGLMLTDQLLRGEIPSYRIEKRFIKRSG
                     DIAWLDVTAVLMRDDDGIPLYGLAMVEDITDRKRSEDAL"
BASE COUNT          822 a         1056 c         1018 g          736 t
ORIGIN      
        1 cagatcgcca tgcgcgacgc ccgacgcttc caacgcgctg accacgcgca gccattcgtc
       61 cgcgagatgc agcaacacgt cacgccggtg aagcatttcg ccaacgtaca aatcgagcgt
      121 tggtccctcg atccacttca tgaacaggat cggataacgc tggccgccga ccaaaattcc
      181 ttcgggcgcg taacggaaat ccgaaagaca taaaaccggc agcgattgca cgtgctcctg
      241 aatcgccaga taacgctgat cgcgatcgcc gaggtaacca cgaaaacaac gcaccgcgaa
      301 gtcgccatgt ccgtttgtcg acttcagttt gtaaacgtaa gcaaactgcc ccgaagtgac
      361 gatcggcatg ccgagacggt caaccgccgg cagggtgttt ttcaaaaccg ggctcgcaaa
      421 acagaccgaa gggcattgaa tgacctcggt aaagtgtctg gccgatggcc agtacctggg
      481 aacctgggtt ggatgcgagg gcgaggctgc cactagctgg tactccgctg ctgaatttcg
      541 aggcgtatca cggcgatgtc atcgtttctt attctgccag cgacccgctc attctcaaag
      601 aattttgcgg cgtcgggttc gtcgttgtcc cggagaatgt cggaaaagtc gttccgttcg
      661 aagcgttcga gataccacgc ggccgccgcg tctgaaagta gaaacagtat gtcgttgggc
      721 tggcaacggc cggaatcgac gacgagcgaa tcagcactgg ttttgtgaat caccgggtcg
      781 gaagccacga gcagcggcgc gctgttgaaa gctgctgaac tggaaaccgg caaactcttg
      841 agcagcgctc cagcgcggca gtgaaacagg cacgcatcgc ccagtgcgat cgctttccac
      901 gcgggcgcgt cgctgtgcag atccagctcg acgccgacga aagccgcaaa cgatcctttt
      961 cgcgctttct cttccgcgta ccacggcagc gttagctggc tccacgccga gtgcaatgca
     1021 gccccttcgc cggcgaccca atcgtgaaat gtttcagatg tgagcgccga ctcactgcgc
     1081 acccaatttt ccgcgagtcg ttgcgcccag ttgcgggcgt cgaatgcttc ggtcgcgccg
     1141 tcagccacgg cgaagcggcc ggtctgttcg ttgatgccga tgaagtcttc acactcggac
     1201 gcctcaaagc ccgacttggg caacagaacc tgttgcgttc gcaactccca gccagcgctc
     1261 tgtttgacag aactcattcg ggctccgtga tctcgtccat ccagcggtaa ggcgtcatgc
     1321 cggtcaggct cgtgccgatc tcgtagaact gtacgatgga agatgggtcg ccgttgaaaa
     1381 caaatccgcg cgaaccttcg accgtgtgaa cgccgagttg tgcggccgcg gctaagaagc
     1441 tgtgcggcaa gggactggaa atcttgtaca acgtgcgcgc gaatccgtcc ggcaaatggc
     1501 tttcgtcgct tggatactcg accttcgccg cgcgccgtga agagatgtgg cagttgaaca
     1561 aaagaacatt cccgtcgtca gtgccgagcg acatgatctg ctgaccgatg tcgaacggct
     1621 cgccgtcgct cgattcgccg tccgtcagat gcaacaccgt cggcggaaaa ccgcgcgggt
     1681 gttgtgacag ccatcgttcg agtagctgct tcacgcgcgt gagcgcgtca cacatcggcg
     1741 tcttgccgtc ggcagtggga tgaatccaaa caggaaaccg cacgggaatc tcgacccagc
     1801 ccgacgcgcc gtcagagact cgcttgtaac tactcttgat ctgtaacgga tgatcggcga
     1861 cgtcggcgat cggaatgatc tcgcgcgaag ccagcgggcc ggcgaacgcg ctccacacct
     1921 gtcgtccgta accaagcacg gcgacgtggt agtaattcct gacttcctcg gttttcgtgc
     1981 aacgaataac aagatcgtgc agcgtgtggt tcaccacttc ggcaacgaag tcggccttct
     2041 tccgcgccga gtcgccgctg aaaggatcgg acatcgatgc tgactggtcg atcagcagaa
     2101 caacacaggt tgggtttgcg cgcgtgatct gggctgaata catttgcagt ctattctaac
     2161 gacaacacag aatgcccgcg gatacttgca tttcgcggga ggcctaaata aatcaccagt
     2221 gacatcacgg ttagtgattg tcccaagatg tcgcctgcga tggaggtgac caccatcagt
     2281 ggccacaacg aactgagttc agcagcggaa ccgagaacaa aaccaattcc cagcgaaggg
     2341 attgctatga tgagtcccag cactatccac gcgccgagaa tctggagccg gtttcctctt
     2401 gtcatctcca tgcttcgggc aaaaacttcc gacactgagc ctttctccag aatggcaacc
     2461 ggataaacca ccgcaaacga cagcgaggcg atgatacccg gaatgatgca caacgcgtag
     2521 ccgagcaagg tcagcagtcc tgcaattccc gcacagacgg ccagtttgac cagtttgttg
     2581 attccccaac gatacgattc gtggacactc ggcgtctcac cggtctggag cactttcatc
     2641 aacgcgtaga tcagcgccgg cgccatcaac acctcggccg cggcgcccaa caggaaagac
     2701 cacgtcatca gttcccaact ccctgatgct tccggaaggt taagggccct gaagatctga
     2761 agcggtgaga cgatcacgac gacgatcctg gtgatcagcc aaaagttttg cgtgaagatc
     2821 gataaggtat cgcggattac tgtgtcgact ccgaagggct ttatacgcgg tacgatctgg
     2881 tccggatcga ctaatggttg ccattcctga ggttgaactt gggactcaaa ggttggttgc
     2941 atgaggtttc tctttcattc actgcagtgt agcaatgatc tttccggcgg tctgttgttt
     3001 cttcactggt tgcaaggccc ctgtgaagcg tgagtcaaaa gcgggctagg gcgttgccaa
     3061 tctaacgcaa gatgcgcatc agaacaagga ttatatacat gggaatcccc cgccagaata
     3121 cagcgactac cggattgttg atttgccaga cagttgattg gatcgcagtg tgaaaacgtc
     3181 tccctacgct tcccaacagt cccagaaagt gtctgagaaa aaacgcacgc ccgagtccga
     3241 gcaggcgagt catgctaccg aagcccgatt tcgccaggcg tttgataatg cgccgatcgg
     3301 aatggccgtg atcgacttca acttccgctt ccggcgcgtg aacgccgcgc tctgccgcgc
     3361 gctcgattac acgcccgcgg agttacttca acaacgcctc gccgacatca cgcacgccga
     3421 cgacgtttcg cgcggcctta tgctcaccga ccaactgttg cgcggcgaga tcccgagtta
     3481 ccggatcgaa aaacggttca tcaagcgtag cggtgacatt gcgtggcttg acgttacggc
     3541 ggtgctgatg cgtgacgacg acggtattcc actttacggc ctcgcgatgg tggaagacat
     3601 cacggatcgg aaacgttcgg aagacgccct gc
//
LOCUS       DASWTX010000958         3122 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_206630, whole genome shotgun sequence.
ACCESSION   DASWTX010000958 DASWTX010000000
VERSION     DASWTX010000958.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3122
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206630"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..413
                     /locus_tag="VGD38_14530"
     CDS             <1..413
                     /locus_tag="VGD38_14530"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY0729291.1"
                     /translation="TSFEKSIPYLGVFLRVLVGLAAVVSALVVMLAMYTTITERTREI
                     GILKAMGASRGYIVGIIEKEAILISVIGLIAGFAVSLVTGYLIHRAYGLVFEYSWTWA
                     AVAAAIGLIGGVLGALYPAWRASNLDAVNALAYE"
     gene            complement(391..1455)
                     /locus_tag="VGD38_14535"
     CDS             complement(391..1455)
                     /locus_tag="VGD38_14535"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase
                     domain-containing protein"
                     /protein_id="HEY0729292.1"
                     /translation="MAVESPELEQRARRSKFAPLGIVFGLLGLLLFAYFVRRAGIGEI
                     FSNIQRLGAGFLLILAISSTRYVVRALAWTRCVERPHRLPFRDALRARLMGDALGNII
                     PFASVAVSEPSKAVFVKDRVPLLVGLSALAIENIFYALSVALFICAGTATLLLSFSLP
                     KPLRYASIGALVTTLIIIPAGYFLLRSQKKFLSAALGFFGRRGVAPNLVAKILPRAQT
                     LEERVYGFYDRNRGSFLSIFALDMCFHVAGVVEVYTTLSFISPVAPTLRQAFILESVN
                     RIINVAFKFIPLRAGVDEGGTGQVSKVLGFARGIGETLAIIRKGRDIFWSAVGLLLIW
                     RKGFSLSGLTDDEPTRTPAH"
     gene            1551..2732
                     /locus_tag="VGD38_14540"
     CDS             1551..2732
                     /locus_tag="VGD38_14540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016293395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HEY0729293.1"
                     /translation="MSQSQTALAQAPAIPLTTLSEDESMFRASVREFAEGEIRPRVEQ
                     MDEAAKLDPAVIKQCFDLGLMGIETPEEYGGAGATFFSAILAVEELSRVDASVGVFVD
                     VQNTLVNNAFIRWGTPEQKQKYLTRLASEHVGAYALSEPSSGSDAFAMQTRAVDKGDH
                     YLLNGRKLWITNGIEAEIFVLFANSNPEAGYKGITAFIVEKSFPGFSIGKKENKLGIR
                     ASSTVELILEDCQVPKENVLGEAGKGYKISIETLNEGRIGIGAQMIGIAQGALESAIA
                     YTAERQQFGKPINQFQGVQFQLAEMATDLEAARLMVYNAARMKDARINFVKEAAMAKL
                     YSSRVAERVSSKAIELYGGYGYVKDYPVEKYWRDSKIGAIYEGTSNMQLQTIAKLIIG
                     K"
     gene            2729..3046
                     /locus_tag="VGD38_14545"
     CDS             2729..3046
                     /locus_tag="VGD38_14545"
                     /inference="COORDINATES: protein motif:HMM:NF024579.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0729294.1"
                     /translation="MTNRIELFEQMLTSDPGNTSVLFGLAKEYEKAGRDRELIDTLNR
                     YLEKVDDEGNAFGMLASAYERLGDRDKAREAYQRGIETAQRHGHPGMAEEYRMTLAGD
                     YED"
BASE COUNT          736 a          884 c          910 g          592 t
ORIGIN      
        1 ttacgagttt tgagaagagt attccgtatc tcggcgtgtt tctgcgcgtg cttgtcgggc
       61 tggcggcggt ggtcagcgcg ttagtcgtaa tgctggcgat gtacaccacg atcactgaac
      121 gcacgcgcga gatcggcatc ctgaaagcga tgggcgcttc acgtgggtac atcgtcggaa
      181 tcatcgagaa ggaagcgatt ctgatcagcg tcatcggcct gatcgccggg ttcgcggttt
      241 cactcgtgac gggctatctg attcaccgcg cttacgggtt agtttttgag tacagctgga
      301 cgtgggccgc tgtcgcggcg gcgatcggat tgatcggcgg cgtgctcggt gcgttgtatc
      361 ccgcgtggcg cgcgtcgaat ctcgacgcgg tcaatgcgct ggcgtacgag taggctcgtc
      421 gtcggtaagc ccgctgagcg aaaagccttt tctccagatc aataaaagac cgactgcgct
      481 ccagaagatg tcgcggccct tgcgaatgat cgcgagtgtt tcgccgatgc cgcgcgcgaa
      541 tcccaacacc ttcgacacct ggcccgtccc gccttcatca acacccgcac gcaacggaat
      601 gaatttaaac gcgacgttga tgatccgatt caccgactcg agtatgaacg cctgccgcaa
      661 tgtcggcgct accggactga tgaacgacaa cgtcgtgtag acctcaacaa cacccgcgac
      721 gtgaaagcac atgtccagcg cgaagattga aagaaagctc ccgcgattgc ggtcgtagaa
      781 accgtagacg cgttcttcga gtgtttgggc gcgcggcagg atcttcgcga ccaggttcgg
      841 cgcgactcca cgacgcccga aaaacccgag cgccgcactc agaaactttt tctgacttcg
      901 cagcaggaag taaccggcgg gaataatgat cagcgtcgtg acgagcgcgc cgatgctcgc
      961 gtaacgcaaa ggtttcggca gcgaaaaact gagcaacagc gtcgccgtgc ccgcgcaaat
     1021 aaacagcgcg actgacagtg cgtaaaagat gttctcaatc gccagcgccg aaagcccgac
     1081 gagcaaaggc acgcgatctt tcacgaacac ggccttcgac ggctcgctca ccgccacgct
     1141 cgcaaacgga atgatgttgc cgagcgcgtc ccccatcaaa cgcgcgcgta gtgcgtcgcg
     1201 aaacggcaac cgatgcgggc gttcgacgca gcgcgtccag gcaagcgcgc gaacgacgta
     1261 acgagtgctg gaaatcgcga ggatgagcag gaagccggcg ccaagacgtt gaatgttgga
     1321 aaaaatctcg ccgattccgg cgcgccggac gaagtaggcg aacaacaaca gtcccagcag
     1381 gccaaatacg attccaagtg gcgcaaattt gctgcgacga gcgcgctgct caagttccgg
     1441 gctttcaact gccatctggt aacgttaaca catccgcctt tgcgggaaac ttcgccgctc
     1501 gattatcatg ctacgttcat cttgagtccg acataacgaa catcactaac atgagtcaat
     1561 cacaaacagc tctggcgcaa gcacctgcta ttccacttac gaccctctcc gaagacgagt
     1621 cgatgtttcg cgcgagcgtc cgcgagtttg ccgagggcga gatccgcccg cgcgtcgaac
     1681 agatggacga ggccgcgaaa ctcgatccgg ccgttatcaa gcagtgtttt gatctcggtt
     1741 tgatgggtat cgaaacgccg gaagagtacg gcggcgcggg cgcgactttc ttcagcgcca
     1801 ttctcgccgt cgaagaactc tcgcgtgtcg atgcttccgt cggcgttttt gtggacgtgc
     1861 agaacacgct cgtcaacaac gccttcattc gctggggcac acccgaacag aaacaaaagt
     1921 acctgacgcg cctcgcgagc gagcacgtcg gggcgtacgc gctgagcgaa cccagctccg
     1981 gttcagacgc tttcgcgatg cagacgcgcg ccgtcgataa gggcgatcat tacctgctca
     2041 acggccgcaa gctctggatc acgaacggca tcgaagccga gatcttcgtg ctcttcgcga
     2101 actccaatcc ggaagcgggt tacaaaggca tcaccgcttt catcgtcgaa aagagttttc
     2161 ccggtttctc gatcggaaag aaagagaaca aactcggcat tcgcgcgtcg tcgacagtcg
     2221 agttgattct cgaagattgc caggtgccga aagagaacgt gctcggcgaa gcgggcaagg
     2281 gttacaagat ctcgatcgaa acgctgaacg aaggccgcat cggcatcggc gcgcagatga
     2341 tcggcatcgc gcagggcgca ctcgaaagcg caatcgctta caccgccgaa cggcaacaat
     2401 tcggcaagcc gatcaaccag tttcagggtg tgcagtttca actcgccgaa atggcgacgg
     2461 acctcgaagc cgcacggctc atggtttaca acgccgcgcg catgaaagac gcccggatca
     2521 atttcgtcaa ggaagcggcg atggcgaaac tctactcgtc gcgcgtcgcc gaacgcgtca
     2581 gttcgaaggc catcgaactc tacggcggct atggttacgt gaaggattat ccggttgaga
     2641 aatactggcg cgattcgaag attggcgcga tttacgaagg cacgtccaac atgcagttgc
     2701 agacgatcgc gaagttgatt atcggcaaat gacgaatcgt atcgagcttt tcgaacaaat
     2761 gttgacctcc gatccaggca acaccagtgt gcttttcgga ctggcaaagg agtatgagaa
     2821 agccggccgc gatcgcgagt tgatcgacac gctgaatcgt tacctcgaaa aggtcgacga
     2881 cgaaggcaac gcgttcggaa tgttggcgag cgcgtacgaa cggcttggtg atcgtgacaa
     2941 ggcgcgcgag gcttaccagc gcggcatcga aacggcgcaa cgccacggcc atcccggcat
     3001 ggccgaggaa taccgcatga cgctggcggg tgattatgaa gactgatact aaagttctaa
     3061 agctggttcg caaaacgagt tcatcgatgg aagtgagttc atctccggaa gattccatcg
     3121 aa
//
LOCUS       DASWTX010000959         4318 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_102979, whole genome shotgun sequence.
ACCESSION   DASWTX010000959 DASWTX010000000
VERSION     DASWTX010000959.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4318
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102979"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1139
                     /locus_tag="VGD38_14550"
     CDS             <1..1139
                     /locus_tag="VGD38_14550"
                     /inference="COORDINATES: protein motif:HMM:NF012897.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HEY0729295.1"
                     /translation="ERDVVGVSVLSGNRNFEARVHQSIKANFLMSPPLVVAFALAGRI
                     DLDMATDPIGTGNDGQDVYLRDIWPTMDEVKEVMHAAFDPETYQRLYSNFAEQNPMWN
                     DIPSTGGNVYEWEPQSTYIREPPYFENFHSYLESLSDVKGARPLAIFGDSVTTDHISP
                     AGAIKPSSPAGLYLQEQGVDIKDFNSYGARRGNHEVMVRGTFANVRIKNLMVPGVEGG
                     VTIHHPSGERISIYDAAMRYQSEGVPLVIIAGQEYGTGSSRDWAAKGTRLLGVKAVIA
                     QSFERIHRSNLVGMGVLPCQFKDDTNAASLRLDGSERFDLHGIEDGIEPLEEIKLVIH
                     RKSGAVEEVPVILRIDTPIEVDYYKHGGILPFVLRQLLSGTTEF"
     gene            1151..2659
                     /locus_tag="VGD38_14555"
     CDS             1151..2659
                     /locus_tag="VGD38_14555"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY0729296.1"
                     /translation="MSTAELAQNTSPRTYKLFIDGQWVDSESGKTFTTPNPATGETLA
                     EVAEADKADIDKAVAAARRAYEGKWSKMSARDRGRLLYKLSQLIEQNAAELAAIETAD
                     NGKPIKESLYVDIPQVVENFEYFAGWATKIEGETIPVPGKMFNYTLREPIGVCGQIIP
                     WNFPLLMAAWKLAPALAAGNTVVLKPAEQTPVGAMELGKLIQEAGFPEGVVNIVPGYG
                     ETAGAALASHPGIDKIAFTGSTEVGKLIAKSAADNLTKVSLELGGKAPNIVFADSDIE
                     QAVAGAMMGIFYNQGQVCCAGSRLFVEESVKEEFVGKLSEKASKIVVGDPTNKATQMG
                     PQVSEEQLNRIKGYVDIARSEGAAVVTGGASPQLEGSFQRGYFFTPTIFDDVKNNMRV
                     AQEEIFGPVVSVITFKDEDDLLKQANDTIYGLSAGIWTRDITRAHRFAREIKAGVVWI
                     NTFNMFNAASPFGGYKQSGYGREMGRHALDLYTQVKSVWVDLSGRPIGWFGK"
     gene            2715..3068
                     /locus_tag="VGD38_14560"
     CDS             2715..3068
                     /locus_tag="VGD38_14560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729297.1"
                     /translation="MPALRKTAVLLALLSGTLLVTACPSQTNISKINADPGRYQGKEV
                     GIAGRVTNSYGAAGVGAYELDDGTGRIWVATKRGVPSRGAQVGAKGYLRSGVNFNGQN
                     YGTVLEETDRRARGK"
     gene            3111..3563
                     /locus_tag="VGD38_14565"
     CDS             3111..3563
                     /locus_tag="VGD38_14565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729298.1"
                     /translation="MDHLDGECVRVIRDLKQLVNSVTPDLLYRRPPHVTIGENALRSA
                     AVLEQTFGGLTANLWDDPFEWTLPEALSTPELVTEYLSEVDAARERAFKSIASDRDLT
                     KYISGPSGEPQQLFALLLETLMKASDYHGRAVATVKMLFGDGGQRGII"
     gene            3683..4150
                     /locus_tag="VGD38_14570"
     CDS             3683..4150
                     /locus_tag="VGD38_14570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729299.1"
                     /translation="MIQLLTTGGMLPVYHQSDEPQPPSARRKGVKQGAILLLSGAVIV
                     PILAVFASFSNAAFPQILAALAAIICFIGGPFRMLYAALFEEGAPRRFPAYGPPPIPV
                     PQQFGPPRQHTALPPQPVRPPAWRKPNTAELANPPSVTENTTRLLDKEDRTER"
BASE COUNT          960 a         1218 c         1284 g          856 t
ORIGIN      
        1 ccgaacgcga cgtcgtgggc gtttccgtct tgtcgggtaa tcgaaacttc gaagcgcgcg
       61 tgcaccagag tatcaaagcg aattttttga tgagcccgcc gctggtggtt gcttttgctc
      121 tcgccggacg aattgacttg gatatggcga ccgatccgat cggcaccggc aacgatggcc
      181 aggacgttta tctccgcgac atctggccca cgatggacga agtcaaagaa gtcatgcacg
      241 cagcgttcga tccggaaacg tatcaacggc tttacagcaa cttcgccgaa cagaacccga
      301 tgtggaacga cattccgtcg accggcggaa acgtttacga gtgggagcca caatcaacgt
      361 acattcgcga acctccgtac ttcgagaact ttcacagcta tctcgagtcg ttgtctgacg
      421 tgaaaggcgc gcgcccgctc gcgatctttg gtgattcagt cactacggac cacatcagtc
      481 ccgccggcgc gatcaaaccc tcgtcgcccg ctggtctgta tttgcaggaa cagggcgtcg
      541 acatcaaaga cttcaacagc tacggcgcgc ggcgcggcaa tcacgaggtg atggtgcgcg
      601 gcacgtttgc aaacgtgcgc atcaagaacc tgatggtgcc gggcgtcgaa ggcggcgtga
      661 cgattcatca tcccagcgga gagcgcatca gcatctacga cgccgcgatg cgttaccagt
      721 cggaaggcgt gccgctcgtg atcatcgcag gtcaggagta cggcaccgga agctcgcgcg
      781 actgggccgc caaaggaaca cgtttgctcg gcgtgaaagc cgtgatcgcg cagagcttcg
      841 aacgtattca tcgcagcaat ctcgtgggca tgggcgtgct gccgtgccag ttcaaagacg
      901 acacgaacgc tgcttcgctg cgactcgacg gcagcgagcg tttcgatctg cacggcattg
      961 aagacggaat cgaaccgctt gaagagatca agctcgtgat tcatcgcaag agcggcgcgg
     1021 tcgaagaagt cccggttatc ttgcgtatcg acacgccaat cgaggttgat tactacaaac
     1081 acggcggtat cttgccgttc gtgctacgac aactgctttc aggaactaca gagttttaac
     1141 gaggaacact atgtctaccg cagaactagc gcaaaacact tctccacgca cttataaact
     1201 tttcatcgac ggccagtggg tcgactcgga atcgggaaaa acgttcacca cgccaaatcc
     1261 cgcaacgggc gagacgctcg ccgaagtcgc cgaagcggac aaggccgaca tcgacaaggc
     1321 tgtagccgct gctcggcgcg cttacgaagg caagtggtcc aagatgagcg cgcgcgatcg
     1381 cggccggctg ctttacaaac tctcgcaact gatcgaacag aacgcggcgg agttggcggc
     1441 gatcgaaact gccgacaacg gcaagccgat caaagagtcg ctctacgtcg acattccgca
     1501 ggtggtggag aacttcgaat acttcgccgg ctgggccacg aagatcgaag gcgagacgat
     1561 ccctgttccc gggaagatgt tcaactacac gttgcgcgag ccgatcggag tttgcggcca
     1621 gatcatcccg tggaacttcc cgctgttgat ggcggcgtgg aaactcgcgc ccgcattggc
     1681 tgccggcaac acggtcgttc tcaaacctgc cgaacagacg ccagtcggcg ccatggaact
     1741 cggcaagttg atccaggaag cgggatttcc cgaaggcgtc gtgaacatcg ttcccggtta
     1801 cggcgaaacc gcgggcgcag cgctcgcttc gcaccccggc atcgacaaga tcgcattcac
     1861 cggttcgact gaagtcggaa aactgatcgc caagtcagcg gctgacaacc tgaccaaagt
     1921 ttcactcgag cttggcggca aagcgccgaa cattgtcttc gctgactcgg atatcgaaca
     1981 ggcggtcgcc ggcgcgatga tgggaatctt ctataaccag ggacaggttt gttgtgccgg
     2041 ttcgcgcttg tttgtcgaag agtcagtgaa ggaagagttt gtcggcaagc tgagcgaaaa
     2101 ggcgagcaag atcgttgtcg gcgatccgac gaacaaagcc acgcagatgg ggccgcaggt
     2161 ttcggaagag caactgaacc ggatcaaggg ctatgtcgac atcgcgcgca gtgaaggcgc
     2221 ggctgtcgtt acgggtggtg cgtcgccaca gctcgaaggc tcgttccagc gcggttactt
     2281 cttcacgccg acgatcttcg acgacgtgaa gaacaacatg cgcgtggccc aggaagagat
     2341 ctttggacca gtggtctcgg tgatcacgtt caaagacgaa gacgatctgc tcaaacaggc
     2401 aaacgacacg atctacggtt tgtcagcggg catctggacg cgcgacatca cgcgcgcgca
     2461 tcgtttcgcg cgtgagatca aagccggggt cgtttggatt aacacgttca atatgttcaa
     2521 tgcagcgtct ccctttggcg gttacaagca atcgggctac ggccgcgaga tgggccggca
     2581 cgcgctcgac ctctacacgc aggtgaagag cgtttgggtc gatctttccg gcagacccat
     2641 tggctggttt gggaaataaa atcggtgtta tcatcaaggc ctctcccgaa atgccaaaca
     2701 ttaaaggaga ccacatgcca gcattgagaa agaccgcggt gttgttagct cttctcagtg
     2761 ggacacttct tgtaaccgcc tgtcccagcc aaaccaacat ttccaagatc aatgccgacc
     2821 ccggacgcta tcagggcaaa gaggtcggca ttgccgggcg ggtaacgaac agctacggag
     2881 cagcaggcgt cggcgcctac gaactcgacg acggcaccgg ccggatttgg gtggccacca
     2941 agcgaggcgt tccatcgcgt ggcgcacagg ttggcgccaa gggttacctt cgtagcggcg
     3001 tcaattttaa cggccagaac tatggcaccg tgctggaaga aacggatcgc cgcgcgagag
     3061 ggaagtaggc cgcgctcgtt caaatggacc aggactctcc ccgagcactt gtggaccacc
     3121 ttgatggcga atgtgttcgt gtaatccgag atctaaaaca gctcgtcaat tccgtcacgc
     3181 ccgatctgct ctatcgccgc ccgcctcacg tgaccatcgg tgaaaacgca cttcgcagcg
     3241 ccgccgtact agaacaaacc tttggcggct taactgccaa cctttgggac gatccgttcg
     3301 agtggacgct gccggaagca ctctcgactc ccgagctcgt gactgagtat ttgtctgaag
     3361 tcgacgccgc gcgcgagcgt gcattcaagt cgatcgcgag cgatcgcgac ttaacaaaat
     3421 acatttcggg accatcgggc gagccgcaac agctctttgc gctgctgctt gaaacgttga
     3481 tgaaggcgag cgattatcac ggccgcgctg tggccactgt aaaaatgctg tttggcgatg
     3541 gcggtcaaag gggtattatc tagcgcgtcg taaaagactc cgttggcgag gaacgatctc
     3601 catgtattgt ccgcaatgcg gtcagcaaca agcttcggga gttgtcaggt tttgttctcg
     3661 ctgtggtttt ccgctggatg gcgtgattca gttgttaacg accggcggga tgctgcccgt
     3721 ctatcatcag tctgacgagc cccagccgcc ctcggcgcgc cggaaaggcg tgaaacaggg
     3781 cgcgatcttg ttgctttcgg gcgcggtgat tgttccgatt ctggcagtgt tcgcgagttt
     3841 ctcgaacgcg gcgttcccgc agattctcgc ggcgctggcg gcgatcatct gtttcatcgg
     3901 cggtccgttt cgaatgcttt acgcagcgtt gtttgaggaa ggcgcgccgc ggcgttttcc
     3961 ggcgtatgga ccaccgccga tacctgtgcc gcagcagttt ggaccaccac gacaacacac
     4021 tgcgttacca ccgcaaccgg tgcggccgcc cgcctggcgc aagccaaaca cggcggagct
     4081 ggcgaatccg ccgagtgtca ccgaaaacac cacccgttta ctcgacaaag aagatcgtac
     4141 agagcggtag ttgttagccg aacgactgag agaactgata cgcgcgcgtg gtccgatccc
     4201 gtttcgtgat tggatggagg cggcgcttta cgatccggag tttggttact acacgcgcgg
     4261 cgatctgaag cgttggggca gggaaggcga ttatcgcacc agtgccgaac gcagtgaa
//
LOCUS       DASWTX010000960         2368 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_206665, whole genome shotgun sequence.
ACCESSION   DASWTX010000960 DASWTX010000000
VERSION     DASWTX010000960.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2368)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2368)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2368
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206665"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..494)
                     /locus_tag="VGD38_14575"
     CDS             complement(<1..494)
                     /locus_tag="VGD38_14575"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEY0729300.1"
                     /translation="MTLTPRPLIICGLVLLALGVRFLTWQDNHRDIGKVQTGVTEGYK
                     ESARQLAGGDLKLFVSDINQMGHPPGYPILLAPIFKTFGDSDTAIQVVQILFDAVAVV
                     LLFLIALEYLPLTAATFCGLLGALSPQFAYFSVVLLPDSLVVPPILLAVWLLITAKKA
                     TQLA"
     gene            508..1761
                     /locus_tag="VGD38_14580"
     CDS             508..1761
                     /locus_tag="VGD38_14580"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0729301.1"
                     /translation="MYHAPFVGGRCFTSLIGMLEGKSIICFGGEDWWYHHPHSKAHLM
                     RKFASAGTKVIFVNSISMGLPGLAHKDLLPRIKRKLGSYSKLARQTPEGITVVSPASL
                     PFFGTAAARKVNRRLLSVQIGKLARSRGLTKPILWIAIPTAAEMIGTLDESAVVYQVS
                     DKYDANTMDHATDPALIRRLHEHAIDAADLVFYSGRKLFNEATRGRERSYLLEQGVDY
                     EHWRRVGEGTVEVAPEVAEIPRPRIGYFGAIEPWLVDQELIKRAARERPEWQWIFIGN
                     KSRGLEIEDLANTHFLPPVPYAELPKFAAGFDVCVLPWETEQSFTSYGSAIKVREYLA
                     TGKPVVIAPLPEYEPMGDVLRIARSRDDFLRLVEEALRENDPSMKEKRQAAVASGTWE
                     ARAEHVSELIEKALRDRDKRQIVKN"
     gene            1778..>2368
                     /locus_tag="VGD38_14585"
     CDS             1778..>2368
                     /locus_tag="VGD38_14585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase"
                     /protein_id="HEY0729302.1"
                     /translation="MQNRKTGRPFVGEVPVPALQRGRVLVRTVASLISAGTERAAVEL
                     VGKGLVQEARERPDLVKAVVAKVKSEGLLNTVAAVRDKMVASQALGYSAAGIVTAVAD
                     DVTEFQIGDRVACAGVGFASHAEVLSVPKNLCVHLPEQVSFESGAYGTLGAIALQGVR
                     LAEPTLGESVVVIGLGLVGQLTVQLLKANGCRVVGLD"
BASE COUNT          473 a          547 c          835 g          513 t
ORIGIN      
        1 tgcgcaagct gtgtggcctt tttagcagtg attaaaagcc agactgctaa gaggatcggc
       61 ggcacgacta gcgagtctgg cagcaacact acactgaagt aagcaaactg gggtgagagc
      121 gcgcctagca aaccacaaaa cgttgctgcc gtgagaggca ggtactcgag cgcgatcaga
      181 aatagaagta caactgcgac agcgtcgaac agaatttgta cgacctggat cgccgtgtct
      241 gagtcgccaa acgttttgaa gatcggggcg aggagaatcg gataacccgg cggatgcccc
      301 atctggttga tgtcgctcac gaacaacttc agatcgccgc cggcgagttg tcgcgcggat
      361 tctttgtagc cttcggtaac gccggtttgg acctttccga tgtcgcggtg attgtcctgc
      421 caggtgagga accgcacgcc gagggcgagc aaaacgaggc cacagatgat gaggggccga
      481 ggcgtcaggg tcataagacg cggtgtaatg tatcatgcac cgtttgttgg tgggcgttgt
      541 ttcaccagcc tgataggcat gttggaaggc aaatcgataa tctgctttgg cggcgaagac
      601 tggtggtacc accatccgca ctccaaagcg cacctgatgc gaaaattcgc gagcgcgggc
      661 accaaagtga tctttgttaa ctcgatttcg atgggcttgc cgggtttggc ccacaaggat
      721 ctgttgccgc gtatcaaacg caagctcggc agctattcga aactcgcgcg ccagacgccc
      781 gaaggcatca cggttgtgtc gcctgcgagt ttgccgttct ttggcacggc tgcggcgcgc
      841 aaggtgaacc ggcgtttgtt gagtgtgcag atcggtaagc ttgcgcgcag ccgtgggttg
      901 acgaagccga ttttgtggat cgcgattccg accgccgcgg agatgatcgg aacgcttgat
      961 gaatctgcgg tggtctacca agtgtcggac aagtacgatg caaacacgat ggaccacgcg
     1021 accgatccgg cgttgatcag acgtctgcac gagcacgcga tcgacgccgc ggatctggtg
     1081 ttttattccg gccgcaaact cttcaacgaa gccacgcgcg ggcgtgagcg ttcgtatttg
     1141 ctcgaacagg gtgttgatta cgagcactgg cggcgtgttg gcgaggggac ggttgaggtc
     1201 gcgccggagg ttgctgagat tccgcgtcca cgtatcgggt acttcggcgc gatcgagccg
     1261 tggctggtgg accaggagct gatcaagcgc gccgcgcgcg agcgtccgga gtggcagtgg
     1321 attttcattg gaaataaatc gagagggttg gagatagaag atcttgcgaa tacgcatttt
     1381 ctgccgccgg tgccgtatgc ggagttgccc aagtttgcgg cgggattcga cgtttgcgtg
     1441 ttgccgtggg aaactgagca gtcttttacg agctatggat ctgccatcaa ggtgcgtgag
     1501 tatctcgcga cgggcaagcc ggtggtgatt gcgccgctgc cggagtatga gccgatgggg
     1561 gatgtcttgc ggatcgcgcg cagtcgtgat gattttttgc ggttggttga ggaggcgctg
     1621 cgtgagaacg atccttccat gaaggagaag cggcaggctg ctgtggcttc gggaacttgg
     1681 gaggcgcgcg ctgaacacgt gagtgagctg attgagaagg ctttgaggga cagggataaa
     1741 cgacagatag taaagaacta ataagttgaa gcaggtgttg caaaacagaa aaaccggtcg
     1801 gccgtttgtc ggtgaggtgc cggtgccggc gttgcagcgc gggcgtgtgc tggtgcgcac
     1861 ggtggcttcg ttgattagcg cgggcacgga gcgcgcggcg gtggagttgg ttgggaaggg
     1921 attggtccag gaggcgcgcg agcggccgga tttggtgaag gccgtggtcg cgaaagtgaa
     1981 gagcgaggga ttgctcaata ctgttgctgc ggtgcgcgac aagatggttg cgtcgcaggc
     2041 gttgggttac agcgcggcgg ggattgttac ggcggtggcg gacgatgtga ctgagtttca
     2101 gatcggcgat cgcgtggcgt gtgcgggcgt tggattcgcg tcgcatgcgg aagttttgtc
     2161 ggtgccgaag aatctttgcg tgcatctgcc ggagcaggtg agctttgaat cgggcgcgta
     2221 cggaacgctc ggcgcgatcg cgttgcaagg cgtgcggctc gcggaaccga cgcttggcga
     2281 gtcggtcgtg gtgatcggtt tgggtttggt tggacaactc acggtgcaat tgctgaaagc
     2341 aaatggttgt cgcgtcgttg gtttggac
//
LOCUS       DASWTX010000961         1973 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_167948, whole genome shotgun sequence.
ACCESSION   DASWTX010000961 DASWTX010000000
VERSION     DASWTX010000961.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1973)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1973)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1973
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167948"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1066)
                     /locus_tag="VGD38_14590"
     CDS             complement(<1..1066)
                     /locus_tag="VGD38_14590"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0729303.1"
                     /translation="MIKDLRYAIRTLLKRPGFLAVAISTLALGIGATTAMFTVVNSVL
                     LRPLQFPEPERLVLLEGINPRQGITRSNMSVPDLVDWQQRSQSFEQLAGFYSGGVFIA
                     TGDETERVRSSGVSPEFFPLFRVQPLSGRAIQADDVQEGRDPIAVISYALWQRRFGGA
                     ADVVNRQVILNGRTTTIVGVMPAGFNYPGDTELWVPFPLNAADEVRENRYVNVVARVK
                     PGVSLAQAQAELDTINQRLEQSYAISNTGWGVRVYELRERLVGELRTSLYLLFGAVAL
                     VLLIACANVANLLLARAAYRQKEIALRTALGASRGRVVRQLLTESLLLSVVSGAIGLV
                     LSIWLIKLLIALSPPNSPRFD"
     gene            complement(1084..>1973)
                     /locus_tag="VGD38_14595"
     CDS             complement(1084..>1973)
                     /locus_tag="VGD38_14595"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY0729304.1"
                     /translation="VEGQPAERGENVPLSMNASAGPGYFQTMGTSLVHGREFTEQDQA
                     NTELVAVVNETFVQKLLPHLGSSADAVGKRISYSSASGPYMRIVGVARDGKYFNITEG
                     PRSFIWSPMTQDYNSTGILTVRTEGNPESLIGAVRKEVQALDPNLPLFDVKTLTEHMR
                     LALFAPKIAAMVLGVFGLVALLLSAIGIYGITSYTVAQRTHEIGIRLALGAQLSDVLK
                     LVLSHGLKLTIIGAALGVFGAFVVTRAIRSVLYGVSPTDPLTFGVVAGLLVGVALLAC
                     YVPSRRATRVDPLVALRNE"
BASE COUNT          423 a          644 c          555 g          351 t
ORIGIN      
        1 cgtcgaagcg tggactgttc ggcgggctca gcgcgatcag caacttgatc aaccaaatac
       61 tcaacacgag accgatcgcg ccactcacca ctgaaagtaa taagctttca gttaagagtt
      121 gccgcaccac gcgcccgcga ctcgcaccaa gcgccgtccg cagggcgatc tctttctgcc
      181 ggtaagcagc gcgcgcgagc agcaggttcg cgacgttcgc acacgcgatg agcaaaacta
      241 acgcgaccgc accaaataac aaatacagcg atgtgcgcag ctcgccaacc aatcgttcgc
      301 gcagctcata gacacgaaca ccccaaccgg tattcgagat tgcatagctc tgctcgagcc
      361 gctgattgat cgtatcgagc tcagcttgcg cctgcgcgag cgacacgccg ggcttcacgc
      421 gcgcgacgac gttgacgtaa cggttctcgc gaacttcgtc cgccgcattg agcggaaacg
      481 gcacccacag ttccgtgtca ccgggataat taaaaccagc cggcatgacg ccgacgatcg
      541 tcgtggtcct tccgttcagg atcacctgcc ggttaacgac gtccgccgcg ccgccaaaac
      601 gtcgctgcca caacgcgtaa ctgatcaccg cgatcggatc gcgtccttcc tgaacgtcgt
      661 cagcctgaat ggcgcggccg ctcaacggct gaacgcgaaa cagcggaaaa aactccggcg
      721 agactcctga cgaacgcact cgctccgttt catcaccggt cgcgataaac acacccccgg
      781 agtaaaagcc cgcgagctgt tcgaacgatt ggctccgttg ctgccaatcg acgaggtccg
      841 gcaccgacat gttgctgcgc gtgattccct gccgcggatt gatgccttcg aggagcacga
      901 ggcgttccgg ttcgggaaat tgcagcggcc gcagcaacac cgaattcacg accgtgaaca
      961 tcgccgtggt cgcgccgatg ccgagcgcga gcgtggagat cgccaccgca agaaaaccgg
     1021 gccgcttcaa caacgtgcga attgcgtagc gaagatcctt aatcatctgc gtcctctgtg
     1081 gttctactcg tttctcaaag cgacgagtgg atcaaccctt gtcgcgcggc gtgacggcac
     1141 gtaacacgcc agcaatgcga caccgaccaa cagccccgcc accacgccaa acgtcaacgg
     1201 atcggtcggg ctgacgccgt aaagcacgct cctaatcgcg cgcgtcacaa cgaacgcgcc
     1261 gaacactccg agcgccgcgc cgatgatcgt cagtttcaat ccatgactga gcacgagctt
     1321 cagcacgtcc gacaactgcg cgccgagcgc gagccggata ccgatctcgt gcgtgcgttg
     1381 cgcgaccgtg tacgacgtga tgccgtaaat gccgattgcc gaaagcaata gcgcgacgag
     1441 accgaaaacg ccgagcacca tcgccgcgat cttcggcgca aacaacgcga ggcgcatgtg
     1501 ttcggtcaga gtcttcacgt cgaacagcgg aaggttcgga tcgagtgcct gcacctcttt
     1561 gcggactgcg ccgatcaacg attccggatt gccttccgtg cgcaccgtca ggattccggt
     1621 cgagttgtag tcctgcgtca tcggcgacca gatgaacgaa cgcggccctt cggtgatgtt
     1681 gaagtacttg ccgtcgcgcg cgacgccgac gatgcgcatg tatggaccac tcgcgctgct
     1741 gtacgagatg cgtttgccga ccgcgtcggc gctcgagccc aggtgcggca gcagcttctg
     1801 cacgaaagtc tcgttcacta cggcaaccag ttccgtgttc gcctggtcct gttcggtaaa
     1861 ctcgcgtcca tggaccagcg acgtgcccat cgtttggaaa taacccggtc cggcgctcgc
     1921 gttcatcgaa aggggcacgt tttcgccgcg ctcggctggc tggccttcga cga
//
LOCUS       DASWTX010000962         1797 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_250192, whole genome shotgun sequence.
ACCESSION   DASWTX010000962 DASWTX010000000
VERSION     DASWTX010000962.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1797)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1797)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1797
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250192"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..341
                     /locus_tag="VGD38_14600"
     CDS             <1..341
                     /locus_tag="VGD38_14600"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0004713 - protein tyrosine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0004715 - non-membrane spanning protein
                     tyrosine kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CpsD/CapB family tyrosine-protein kinase"
                     /protein_id="HEY0729305.1"
                     /translation="IPPNPAELIGSDQMRRLMSVLQSNFDHVIVDSPPVSSFTDGVLI
                     STMVDGVLLVVHGGKSSRHIVRRAKQLLQEVGAKIFGVVLNNTQVQTHDYYHYQRYYS
                     EKYYGQRTSA"
     gene            354..1217
                     /locus_tag="VGD38_14605"
     CDS             354..1217
                     /locus_tag="VGD38_14605"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0729306.1"
                     /translation="MSTALSDAQNLTGEDLPTLLITPPNRWIPLQLAELWEYRELLYF
                     LVWRDIKVRYKQTALGAAWAVMQPLFMMLVFSLFFGRLAKVPSDGIPYPVFTFCALIP
                     WQLFANALTESSNSLIGNQNLITKVYFARLVIPIAAVLSGLVDFLIAFAILIGMMLFY
                     GIVPGPAILALPGFILLAVLTALAVGLWLSALNVQYRDVRYTMNFLVQFWLFATPVAY
                     PSSIVPESWRALYGLNPMAGVVEGFRWALLGKSAQPSAMLFVSVVVVLVLLVGGLYYF
                     RRMEQEFADIV"
     gene            1214..>1797
                     /locus_tag="VGD38_14610"
     CDS             1214..>1797
                     /locus_tag="VGD38_14610"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY0729307.1"
                     /translation="MSAIVCEGVSKKYAIGRRERYRALRDVIAEAAARPFRGSRMEKA
                     ELLWALKDVSFDVAEGKAVGIIGRNGAGKSTLLKILSRITKPTQGSVRVRGRVGSLLE
                     VGTGFHPELTGRENIFLNGAIIGMRKAEIVRKFDEIVAFAEVEKFLDTPVKRYSSGMY
                     VRLAFAVAAHLETEILVIDEVLAVGDVAFQRKCLG"
BASE COUNT          325 a          443 c          585 g          444 t
ORIGIN      
        1 cgattccgcc aaaccccgcg gaactgatcg gctccgatca gatgcgccgt ctgatgagtg
       61 tgctgcagag taacttcgat cacgtgatcg tggattcgcc gcccgtgagt tcgtttactg
      121 acggcgtgtt gatctcgaca atggtcgacg gcgttttgct ggtggtccat ggcggcaaga
      181 gctcgcggca tatcgtgcgt cgcgcaaagc agctcttgca ggaagtcggc gcgaagatct
      241 ttggcgtcgt gctgaacaac acgcaagttc agacgcacga ctactaccac tatcaacgtt
      301 attacagcga gaagtactac ggtcagcgaa ccagcgcctg atcttttacg tgaatgagta
      361 ccgcgttgtc tgacgcccag aacctcactg gtgaagacct accaacactc ctaatcacgc
      421 cacctaatcg ctggataccg ctccagcttg cggagctctg ggagtatcga gagctgctct
      481 acttcctggt gtggcgcgat atcaaggtgc gttacaagca gacggcgctg ggcgcggcgt
      541 gggccgtgat gcagccgctg ttcatgatgc tggtattcag tctttttttc ggaagactcg
      601 ccaaagtgcc ttccgatggg atcccttatc cggtgttcac gttttgtgcg ctcattccgt
      661 ggcagctgtt tgcaaacgcg ctgacggagt cgagtaacag tctcatcggc aatcaaaacc
      721 tgatcacgaa agtttatttc gcgcggctcg tgatcccgat cgcggcggtg ttgagcgggc
      781 tggtcgattt tctgatcgcg ttcgcgatcc tgatcgggat gatgctgttc tacggcatcg
      841 tgcctggtcc ggcgatcctc gcgttgccgg gatttatttt gctcgcggtg ctgactgcgc
      901 tcgcggttgg tctatggttg tcggcgttga atgttcagta tcgcgacgtg cgctacacga
      961 tgaattttct cgtgcagttt tggttgtttg cgacgccggt cgcgtatccg agttcgatcg
     1021 tgccggaaag ctggcgcgcg ctgtacgggc tgaatccgat ggcgggcgtg gttgagggtt
     1081 ttcgttgggc gctgctcgga aaatcggcgc agccgagcgc gatgttattt gtttcggtcg
     1141 tggtcgtgtt ggtgctgttg gttggtggtc tttattactt tcgccgcatg gagcaggagt
     1201 tcgcggacat cgtttgagcg cgatcgtttg tgaaggggta agcaagaagt acgcgatcgg
     1261 gcggcgcgaa cgttaccgag cgttgcgcga cgtgatcgcg gaagccgcgg cgcgcccgtt
     1321 tcgcggatcg cgaatggaaa aagcagagct gctctgggcg ctcaaggacg tttcgtttga
     1381 cgtggcggag ggcaaagccg tcggcattat tgggcgcaac ggagcaggga agagcacgct
     1441 gctgaagatt ctttcgcgca tcacgaagcc gacgcaggga agcgttcgcg tgcgtggcag
     1501 agttggttcg ctgcttgaag tcggcaccgg gtttcatcct gaactaaccg gacgcgagaa
     1561 catttttctc aacggcgcga tcatcggcat gcgcaaggcg gagatcgtgc gcaagtttga
     1621 cgagatcgtt gcgtttgccg aggtggagaa gtttttggat acgccggtga agcgttattc
     1681 gagcggcatg tatgtgaggc ttgcgtttgc ggtggcggcg catctggaga ctgagattct
     1741 ggtgattgat gaagtgctgg cggtcggcga cgtcgcgttt caacgcaagt gtttggg
//
LOCUS       DASWTX010000963         3013 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_121814, whole genome shotgun sequence.
ACCESSION   DASWTX010000963 DASWTX010000000
VERSION     DASWTX010000963.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3013
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121814"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..414)
                     /locus_tag="VGD38_14615"
     CDS             complement(<1..414)
                     /locus_tag="VGD38_14615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729308.1"
                     /translation="MDHGAAGLIIFGRTLDWRAVMVDDLSRYHHPVSELFPPIDDRYR
                     LTEEQIEFYNEHGYLAGIKMLDDEQLTALREELAELVDPAHPGHELFYEFNANESADP
                     QQILFHALGAWRIKPGLHDLLWHPAFVVSAAQLLGG"
     gene            463..1377
                     /locus_tag="VGD38_14620"
     CDS             463..1377
                     /locus_tag="VGD38_14620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729309.1"
                     /translation="MLDRYSYQAALAASEVIHWRVEDIIGGEKRLDFGKPFIPESLAR
                     VDELSFLDDNDEKRILNQIRGNAYLSIFGLVEEFILPFVLDHARPQLTGDDYRVRALL
                     NFAGEEAKHIQLFKRFRQEFEEGFGVHCPVIGPPEAIASAILAHDPLGIALTTLHIEW
                     MVQRHYIESIKDDRDLDPQFKSLLKHHWIEEVQHAKLDTLMVESLAAGRSEEQILNGV
                     EEYIDIGGFIDGGLKQQVEFDLESFERAAGRDLNNEQKAEFRRKQLQANRWTYLGTGM
                     THPKVLETLEWLSPVARRRVESISGVFC"
     gene            complement(1493..2107)
                     /locus_tag="VGD38_14625"
     CDS             complement(1493..2107)
                     /locus_tag="VGD38_14625"
                     /inference="COORDINATES: protein motif:HMM:NF016176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEY0729310.1"
                     /translation="MTIVLTGLMLVAACGNPATNKSQAVTGEAQQAPSAQPTGAQTYK
                     ITPENSKVEFVGSKVTGSHNGSFQKFSGEIHYTGDVTTSHVTITMETDSITTDDEGLT
                     KHLKTPDFFDVAKYPQAKFESTAIKAGGDKGASHTVTGNLTLHGVTKSVTFPATIAVA
                     ADAITVDSTFTINRKDFGINYAGAADNLIRDDVVLTLKIRATKA"
     gene            complement(2203..>3013)
                     /locus_tag="VGD38_14630"
     CDS             complement(2203..>3013)
                     /locus_tag="VGD38_14630"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY0729311.1"
                     /translation="SDDGRNLVPLRELVTWKSTLGPQVVNHLNQFTSMTLFFNLKPGE
                     PLGNATNYITQQAADIVPQGVRAELQGEAQTFSRTVTSLTILMALAVFVMYVILAILY
                     ESYVHPLTVLSTLPTALVGGLLTLIVFGAEASLYAFVGMFMLMGIVKKNGIMIVDFAR
                     QRVEHGERADQAIHDASMDRFRPILMTTLAAVFGAVPIALGYGADGSSRRPLGLVVVG
                     GLIVSQFITLYITPVIYLYLEQFQENVLDRWSFFRSRRSQKPVLAEGEAGD"
BASE COUNT          675 a          858 c          829 g          651 t
ORIGIN      
        1 gccgcccagc aactgcgccg ctgacacaac aaacgcggga tgccaaagca gatcgtgcaa
       61 gccgggttta atgcgccacg cgccgagtgc gtgaaacagg atctgctgcg ggtcggctga
      121 ctcgttggca ttgaactcgt aaaacagttc gtgccccgga tgcgcgggat cgacgagctc
      181 tgccagttcc tcacgcaacg cggtgagctg ttcgtcgtcg agcattttga ttcccgctaa
      241 ataaccgtgc tcgttgtaaa actcgatctg ctcctcggtc agccgatatc gatcgtcaat
      301 tggcggaaac agttcactta cgggatggtg atagcgcgac aggtcgtcaa ccataactgc
      361 ccgccagtct agcgtgcggc caaaaataat caaaccggcc gctccgtggt ccacctcttt
      421 tgcgcgttac tcagacagga acctgtaagg aggtgttcca aaatgttgga tagatattcg
      481 tatcaagcag ccctcgccgc atcagaggtc atccattggc gcgttgagga catcatcggc
      541 ggcgagaaac gtctcgattt cggcaaaccg tttatacctg aatcactcgc ccgcgtcgac
      601 gaactttcgt tcctcgacga caacgatgaa aaacgtattc ttaaccagat cagaggtaac
      661 gcctacctca gcatcttcgg cctcgtcgaa gagttcattc tgcctttcgt gttggaccac
      721 gcccggcctc aactcactgg cgacgactat cgtgttcgtg cgctgttgaa ttttgccggt
      781 gaggaggcga agcacattca actcttcaaa cgtttccggc aggagtttga ggaaggcttt
      841 ggcgttcact gtccggtgat tggtccaccg gaagcaatcg cgagcgcgat cctggcccac
      901 gatccgctgg gaattgcgct aacaacgctg cacatcgagt ggatggttca gcgtcattac
      961 atcgagagca tcaaagacga tcgcgatctc gatccgcagt tcaagagcct gctgaagcat
     1021 cactggatcg aggaagtgca acacgcgaag ctcgacacgt tgatggtcga gtcgctggct
     1081 gcaggccgta gcgaagaaca gatcttgaac ggagtcgaag agtacatcga catcggcggc
     1141 ttcatcgacg gcgggttgaa gcagcaggtc gaatttgatc tcgagagttt tgaacgtgcc
     1201 gcgggtcggg atttgaacaa cgagcagaaa gcggagtttc gccgtaagca gttgcaggcg
     1261 aatcgctgga cgtatctcgg caccggcatg acgcacccga aagtgctcga aacacttgaa
     1321 tggttgtcgc cggtcgcacg gcgcagagtg gaaagcattt caggcgtttt ctgttaacgc
     1381 ctgattccac aaagaagcct ggttctgagt tcaagctttg gcttgctctt aaaagcagcc
     1441 taaaggctga actcagaacc aggctttctc gtgccttggc ttatgtaagt tcctaagcct
     1501 tcgtagccct gattttcaac gtcagcacaa cgtcgtcgcg gatcaggttg tcggcagcac
     1561 ccgcgtagtt aatcccgaag tctttgcgat tgatcgtgaa agtgctgtcg accgtgatcg
     1621 catcagcagc gaccgcaatc gttgccggga acgtgaccga cttcgtcacg ccgtgcaacg
     1681 tcagatttcc ggtaaccgta tgcgatgcac ccttgtcacc acccgctttg atcgcagtcg
     1741 attcaaactt cgcctgcgga tacttcgcca cgtcaaagaa gtcaggggtc ttcaggtgtt
     1801 tcgttagacc ctcgtcgtcg gtggtaatcg aatccgtttc cattgtgatg gtcacgtggc
     1861 tcgtcgtgac atcgcccgtg taatgaatct cgccggaaaa tttttgaaac gatccgttgt
     1921 gactgccggt caccttcgaa ccgacaaact caaccttcga attctctggt gtaatcttgt
     1981 acgtctgtgc gccggttggt tgtgcggacg gcgcctgttg cgcctcgccc gtaaccgcct
     2041 ggctcttatt cgtcgccgga ttgccgcacg cggcgaccag catcagtccc gtcagtacta
     2101 tcgtcaatac gcctaaacgc atcaattctg gtcctcccgt tttgaagtga ggaggaaacc
     2161 ttaacacgat gggctaaggg ccaacaaaca ggattgaatg aatcaatcgc ccgcttcgcc
     2221 ctcagcaagc acgggcttct gcgaacggcg cgagcggaag aatgaccatc ggtccagaac
     2281 gttctcctga aactgctcga ggtaaagata gatcaccggc gtgatgtaga gcgtaatgaa
     2341 ctgcgacacg atcaagccgc cgactacaac caatcccaac ggccgacgcg aagaaccgtc
     2401 agcgccgtaa ccaagcgcga tcggcaccgc gccgaacacc gctgccagtg tcgtcatcag
     2461 aatcggacgg aaacgatcca tgctcgcgtc gtgaatcgcc tggtcggccc tttcgccgtg
     2521 ttcgacacgc tggcgcgcga agtcaacgat catgatgccg ttcttcttca cgatgcccat
     2581 caacatgaac atgccgacga aggcgtaaag cgacgcctcc gcgccgaaga cgatcagcgt
     2641 caacaaaccg ccgaccagcg ccgtcggcaa cgttgaaagc accgtcagcg ggtgaacgta
     2701 gctttcgtaa agaatggcga ggatgacgta catcacgaac accgccagcg ccatcaggat
     2761 cgtcaagctc gtgaccgtgc ggctgaacgt ttgcgcctca ccctgcagct ccgcgcgtac
     2821 gccctgcggc acgatgtccg ctgcttgttg cgtgatgtag ttggtcgcat tgcccagcgg
     2881 ctcgcccggc ttcaggttga agaagagcgt catgctggtg aactggttca ggtgattcac
     2941 gacctgtggg ccaagcgtcg atttccacgt gacgagctcg cgcagcggca cgaggttgcg
     3001 gccgtcatcc gat
//
LOCUS       DASWTX010000964         2861 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_230767, whole genome shotgun sequence.
ACCESSION   DASWTX010000964 DASWTX010000000
VERSION     DASWTX010000964.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2861)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2861)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2861
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230767"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..704
                     /locus_tag="VGD38_14635"
     CDS             <1..704
                     /locus_tag="VGD38_14635"
                     /inference="COORDINATES: protein motif:HMM:NF012427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nucleotide disphospho-sugar-binding
                     domain-containing protein"
                     /protein_id="HEY0729312.1"
                     /translation="HSPLLVLALFSKVFAKPQPDWPKQTEVVGFCFYDGRHQMPMPAE
                     LARYLDEGPAPIVFTLGSSAVWVAHDFFSESIEAARRLRQRAVLLIGDERNRPRSLPD
                     GMIAVDYAPYEQLLPRASVVIHHGGVGTTSQGLLAGVPTLIVPFAFDQSDNADHARRL
                     GTSRTVYRNKYRADRVARELDELLSRPEYKQNAIQVSQELKQENGSARAADLIKNLFR
                     QTPNRDEELVYAAGD"
     gene            688..1410
                     /locus_tag="VGD38_14640"
     CDS             688..1410
                     /locus_tag="VGD38_14640"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: protein motif:HMM:NF009855.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HEY0729313.1"
                     /translation="MLLAIDAGNSNIKLALFDKSELKAQWRLTSNDLSQLADLVPQNL
                     DAILVASVVPALNPTLTRICEDHLKLTPVFVDHTTPTGLKILYDSPAELGADRIVDAV
                     AAVAKYGAPCIVVDFGTATTFNAINAASEFLGGAISPGLMTCSEALFARAAKLPRVNF
                     EKPERVIGSSTVTAIQSGLYHGYTGLVDGVLERMIAEMNVKPRVIATGGLAHAIASRY
                     IELRDDTLTLEGLRLVYERIKN"
     gene            1391..2107
                     /locus_tag="VGD38_14645"
     CDS             1391..2107
                     /locus_tag="VGD38_14645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729314.1"
                     /translation="MNELRINYFNYFTEIEDTFVRRRGKHLFLSPMDWALMETWKQQG
                     IPLHIVLRGIERSFDSYESKPRKRTVKSLLYCQEEVEAQYAEWNEARVGASSSTNPDE
                     EKTPFSLDAITEHLQTNHDLLLQAAAERQPEDDLSEAMTRVAALLSEIEQDLAAGVTL
                     NTRMLEDSLTGFERLLNNSMFAVAKTDDLEKQKTAVKEQLKPYRNHMETEVYNQTFNN
                     LLLKRLREQFSVPRLSLFYV"
     gene            2162..2548
                     /locus_tag="VGD38_14650"
     CDS             2162..2548
                     /locus_tag="VGD38_14650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729315.1"
                     /translation="MAEMTIRRFGVLSLAKMYGLLMFIFGLIIGVLYGLFFIIFGAAM
                     SAMGGARDATAGGVSSVVIGIIMMIAIPVMYGFIGFVMGAIGALVYNALAGMIGGVKF
                     ELEGVQQDYAPPPPPHHWEPHQYPAQ"
     gene            2549..>2861
                     /locus_tag="VGD38_14655"
     CDS             2549..>2861
                     /locus_tag="VGD38_14655"
                     /inference="COORDINATES: protein motif:HMM:NF014047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HEY0729316.1"
                     /translation="MSLEVEIERILPGGYGLAHAEGKTVFVSLAAPGDRLRVRVDRQQ
                     GNVLFASIEEILIASPVRVEPPCPYFGVCGGCDFQQLAYENQRAAKAEIIRDCLHRIA
                     RL"
BASE COUNT          617 a          806 c          830 g          608 t
ORIGIN      
        1 agcattcgcc gttgctcgtg ctcgcgttgt tctcgaaagt gtttgcgaag ccgcaacccg
       61 attggcccaa acagactgag gtagttggct tttgttttta cgacgggcga catcaaatgc
      121 cgatgcctgc cgagctcgca cggtatttgg atgaggggcc ggcgccgatc gtctttacgt
      181 tgggttcgtc agctgtttgg gtggcgcatg atttcttcag cgagagcatc gaggccgcga
      241 ggcgtttgcg ccagcgcgcg gtgttgctca tcggcgatga gcgcaaccgt ccgcggtctt
      301 tgccggacgg catgatcgcg gttgattacg cgccgtacga gcagttactt ccacgcgcga
      361 gcgtcgtgat tcatcacggc ggcgtgggca cgacctcaca aggtctgcta gcaggcgtgc
      421 caacgctgat cgttccgttt gccttcgacc agtcagacaa cgccgatcac gcgcggcgtc
      481 tcgggacaag ccgcactgtt tatcgaaaca aataccgcgc agaccgcgtc gcgcgagagc
      541 tcgacgaact actgtcacgg cccgagtaca aacaaaacgc aattcaagtc agtcaagaac
      601 tgaaacagga aaacggttcc gcgcgcgccg ccgacctcat caaaaaccta ttccgtcaaa
      661 ccccgaatcg cgacgaggag cttgtctatg ctgctggcga ttgacgcggg caacagcaac
      721 atcaaactgg cgctcttcga caagagtgag ctaaaagcgc aatggcgttt gaccagcaac
      781 gatctctctc agcttgcgga cttagtcccc caaaatctcg atgcaatcct ggttgcatct
      841 gtggtaccgg cgctaaaccc gacgctcaca cgcatctgcg aagaccacct caagctgaca
      901 ccggtgtttg tcgatcacac aacacccaca ggcttaaaaa tcctctacga ttcgcccgcg
      961 gagctcggcg ccgatcgcat cgtcgacgcc gttgccgcgg tcgcgaaata cggcgcgccg
     1021 tgtatcgtgg tagattttgg aaccgcgacg accttcaacg cgattaatgc agcgagcgaa
     1081 tttctcggcg gcgcgatcag cccaggacta atgacgtgca gcgaagcgct ctttgcacgc
     1141 gccgcaaaac tgccgcgcgt caatttcgaa aagcctgaga gggtaatcgg ttcgtcaacc
     1201 gtgaccgcca ttcaatcagg cctgtaccac ggttacaccg gcctcgtgga cggcgtgctg
     1261 gaacgtatga tcgcggagat gaacgtgaag ccgcgcgtga tcgccaccgg cggtctcgca
     1321 cacgcgatcg cttctcgata catcgagctg cgagacgaca cactgacgct cgagggcttg
     1381 cgcctcgttt atgaacgaat taagaattaa ctacttcaac tacttcaccg aaatcgaaga
     1441 cacgtttgtc aggcggcggg gcaagcacct gtttctcagc ccgatggact gggcgttaat
     1501 ggaaacgtgg aaacagcaag gcattccgct gcatatcgtg cttcgcggta ttgaacgatc
     1561 gttcgactct tacgagtcga agccgcgcaa gcgtacggtg aagtcgttgc tttattgcca
     1621 ggaagaggtt gaagcgcaat acgccgagtg gaacgaagcg cgcgtcggcg cgtcgtcgag
     1681 cacgaatcct gatgaagaga agactccgtt ttcgctcgac gcgatcaccg agcacctgca
     1741 aacgaaccac gacctgttgc tgcaagccgc ggcagagcgc cagcccgaag acgatctctc
     1801 cgaggcgatg acgcgcgtcg cggcgttgct cagcgaaatc gaacaggacc ttgccgcggg
     1861 cgtgacactg aacacgcgta tgcttgaaga ctctttaacc ggtttcgaac gtttgctgaa
     1921 caactcgatg ttcgctgtcg ctaagacgga cgatctcgaa aagcaaaaga cggcggtcaa
     1981 agaacaactc aaaccttatc gcaatcacat ggagacggaa gtttataatc aaacgttcaa
     2041 taaccttctg ctgaagcgtt tgcgggagca gttttccgtg ccgcgactca gcttgtttta
     2101 tgtctgaccc ccaggatcgc aactgcccgc gcggttgcgg caggctgaaa aggagaatgc
     2161 aatggctgaa atgacaatca ggcgcttcgg cgtgctttcg ttggccaaga tgtacggact
     2221 gctcatgttt atctttggcc tgatcatcgg tgtgttgtac gggctcttct tcatcatctt
     2281 cggcgcggcg atgtccgcga tgggcggcgc tcgcgacgcg accgcgggcg gcgtaagctc
     2341 ggttgtcatc ggcatcatca tgatgatcgc gataccggtg atgtacggat tcatcggctt
     2401 cgttatgggc gcgattggcg ctctggttta caacgcactg gcgggaatga tcggcggcgt
     2461 gaagtttgaa ctcgaaggcg tgcaacagga ttacgcgccg ccgccaccgc cgcatcattg
     2521 ggagccgcat cagtatccgg cgcagtaaat gtctttggaa gtcgagatag aacggattct
     2581 gcctggcggt tatggcctgg cccatgcgga gggcaagacc gttttcgtct cgcttgcggc
     2641 gccgggcgat cgtttgcgag tgcgggttga ccggcagcag ggcaacgtgc tgttcgcttc
     2701 gattgaagag attctcatcg cctcacccgt tcgagttgaa ccgccgtgtc catactttgg
     2761 tgtgtgcggc ggctgcgatt ttcagcagct tgcttatgaa aaccagcgtg ccgcaaaggc
     2821 cgagatcatt cgcgactgtt tgcatcgcat cgcgcgtctt g
//
LOCUS       DASWTX010000965         2027 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_250206, whole genome shotgun sequence.
ACCESSION   DASWTX010000965 DASWTX010000000
VERSION     DASWTX010000965.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2027
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250206"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2027
                     /locus_tag="VGD38_14660"
     CDS             <1..>2027
                     /locus_tag="VGD38_14660"
                     /inference="COORDINATES: protein motif:HMM:NF024754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEY0729317.1"
                     /translation="KGRVPQVCLDIFAKQYALEMVNILLRIDQRLNEEKQKLSALDFD
                     DLELRTLMLLERPEVLARTSERYRFFLVDEFQDTNAVQRVLLERLALTKGRQPANLFI
                     VGDRKQSIYGFRGADVDVFREMTATLLEHGGEEKPLQLNFRSQPPLIAFFNHLFARLF
                     NVPDDIPASEYKNLDQLGYVKHEASEPRRELRDEGALVELLVTTKPSLEDNPRAEQDS
                     RVLDAQQVARRILALKRSSPDLKYGDIALLFRAMTQVGIYESVFRRANIPYQTVLGRG
                     FYEREEITDLIQLLRFLDNKTDEIALAAVLRSPLCGVSDNALLALRCAPLLAEIETAD
                     PLRGFSVTRRLYIALRRHNEIAYISAEEHELLDRAAKLIGELVARRHHYPIQDLLRFA
                     VNESEYMTVIAANFDGAQRLANVERLFTLAARFESSGTHLIRDFVRYVEEFEAIGSRE
                     SEGQIDQAADAVRLMTIHQAKGLEFPVVIIPDLQRLSRVATDNWVLLDRHQGLTLKVP
                     DGRGSLVAGCTYSNFEKRHAWREQFESMRLLYVAASRAQDRLIMSGVTDQIASLNRSN
                     DCWLKWIWQSLDLGERASSSLVELDDDVQLQLTINLAEEATDVEPLTEGQPAEAPPFE
                     DSLVEAFPLVRPVERVVGNAIHRFSVTQLINYHRCPRQYYFDRILLLPTSD"
BASE COUNT          400 a          573 c          610 g          444 t
ORIGIN      
        1 aagggccgtg tgccacaagt ctgtctcgac atcttcgcga agcagtacgc gctggagatg
       61 gtgaatatct tgttgcggat cgaccagcgt ctgaacgaag agaagcaaaa gttatccgcg
      121 ctcgactttg acgatcttga attaagaaca ttgatgctgt tagagcggcc cgaagtgctg
      181 gcgcgcacgt ccgaacgtta tcgatttttt ctcgtcgacg agtttcagga cacgaacgcg
      241 gtccaacgcg tgctgctcga acgtctcgca ttaacaaaag gacgccagcc cgcaaacctc
      301 ttcatcgtcg gcgatcgcaa acagtcgatc tacggctttc gcggcgcgga cgttgatgtc
      361 ttccgcgaga tgaccgcgac cttgcttgag cacggcggcg aagagaagcc gcttcagttg
      421 aacttccgca gccagccgcc gctgattgcg tttttcaatc atctcttcgc gcggctgttc
      481 aacgttcctg acgacatccc ggcgagcgaa tacaagaacc tggaccagtt gggctatgtg
      541 aagcacgaag cgagcgagcc gcgccgtgaa ctgcgcgatg agggcgcgtt ggtcgaactg
      601 ctcgttacga ctaaaccgtc gctcgaagac aatccgcgag ccgaacagga ttcgcgcgtg
      661 ctcgacgcgc agcaggtcgc gcgccgcatc ctcgctttga aacgctcgtc gcccgatctg
      721 aagtacggcg acatcgcgtt gctgtttcgc gcgatgacgc aggtcgggat ttacgaatcc
      781 gtttttcgcc gcgcgaacat tccttatcaa accgtgctcg gccgcggctt ttacgagcgc
      841 gaagagatca ccgacctcat tcaactgctg cgctttctcg acaacaagac ggatgagatc
      901 gcgcttgcgg cggtgttgcg ttcgcccttg tgcggcgttt cagataacgc gttgctcgca
      961 ttgcgttgcg caccgttgct cgcggagatc gaaactgccg atccgttgcg cggcttctcg
     1021 gtcacgcgcc ggctttacat cgcactgcgg cgtcacaacg agatcgctta catcagcgcc
     1081 gaagagcacg aactactcga tcgcgcggcg aaactgatcg gcgagctcgt cgcgcggcgg
     1141 catcattatc cgattcagga cctgcttcgt ttcgccgtta acgaatccga gtacatgacc
     1201 gtgatcgccg cgaacttcga cggcgcgcag cggctcgcga atgtcgaacg tctcttcaca
     1261 ctcgctgccc gtttcgaaag ctcaggcacg cacctgattc gcgacttcgt gcgttacgtc
     1321 gaggagtttg aagcgatcgg cagccgcgaa agcgaagggc agatcgatca agccgcggac
     1381 gccgtgcggt tgatgacgat tcaccaggcg aagggcctcg agtttccggt cgtgatcatt
     1441 ccggatttgc aacggttgtc gcgcgtcgca accgacaact gggtcttgct cgatcgtcat
     1501 cagggtttga cgttgaaagt gcctgacggg cgcgggagtc ttgtcgccgg ttgcacgtac
     1561 agcaatttcg aaaagcggca cgcatggcgc gagcagtttg agagtatgcg tctgctttac
     1621 gtcgccgctt cgcgcgcgca ggaccgtttg atcatgtcgg gcgtcacgga tcagatcgca
     1681 tcgctgaacc gttcgaatga ttgttggttg aaatggatct ggcagtcgtt ggacctgggc
     1741 gaacgcgcgt cgagcagctt ggttgagctc gacgacgatg tgcagttgca gttgacgatc
     1801 aatctcgcgg aagaagcgac ggacgtggag ccgttaacgg agggccagcc ggcagaggcg
     1861 ccgccgttcg aggattcgct ggtcgaagcg tttccgttgg tgcgtccggt tgagcgtgtt
     1921 gttggcaatg cgattcatcg ttttagtgtg acgcagttga tcaactatca ccgctgcccg
     1981 cgccagtact atttcgatcg gatcctgctc ctgccgacga gtgatga
//
LOCUS       DASWTX010000966         5635 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_168060, whole genome shotgun sequence.
ACCESSION   DASWTX010000966 DASWTX010000000
VERSION     DASWTX010000966.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5635
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168060"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..641
                     /locus_tag="VGD38_14665"
     CDS             <1..641
                     /locus_tag="VGD38_14665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729318.1"
                     /translation="QWNIGDRKTLLRGLAADRKGTVYAVHGGGVARYNGETGEKLGEL
                     AYERSGFDDVSAGADGGLVTAWHSNRDDIVTFDANGKLVRTIPAAISSASGDSELSMR
                     VAVDGAGSIYALGRFNNAVFKFGRDGKYINRFGGSGDQPGQFRAAYSIAVDGYGRVYV
                     GDIKGIQVFDADGRYLNVIKPTGMAFGMVFNDKNELFVVARNRVLKYSIQAQ"
     gene            651..2246
                     /locus_tag="VGD38_14670"
     CDS             651..2246
                     /locus_tag="VGD38_14670"
                     /inference="COORDINATES: protein motif:HMM:TIGR00831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006885 - regulation of pH [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="HEY0729319.1"
                     /translation="MHSAFIQYIFLILIILALVMIANKLRLAYPIVLVLGGLALSFTS
                     QFSHITIHPELVFFIFLPPLLYEAAWQVSWKEFWRWRRLIAGFAFPIVIITACVIAFA
                     SYALIPGFTLALGFLLGGIVSPPDAISATTIMRRVNVPKSLVSIIEGESLLNDASSLI
                     VFRFALAAIITGQFDFQEAALSFVVVIVMGIVIGLLIGLVFYAVHRWLPTTPSIEIVL
                     TLVTPYCMYYVAETFHFSGVLAVVSGGLFLSSKRQTLLSFRSRIEGVNVWTNLVFVLN
                     GLVFLLIGLQLRSITQQLGDISLGTAIGYGLIISLVLIVSRLACTLGASIFSTFMSRF
                     ITVADAHPGWRNPLITGWSGMRGVVSLAAALSIPLVVNVGQPFPFRNLILFITFIVIL
                     VTLVFQGLTLPWVIRTIKPEDKYSTMPEPQQELIIQKKIAEASLQFLTQKYGRERAHN
                     EHLSNLFAKLQSDLRSLEGESSEANENSLAEYETVYLELLERQRRLLNEMNRSNDFDE
                     DLIRKYLSLIDFEEVEIRERRVS"
     gene            complement(2239..2820)
                     /locus_tag="VGD38_14675"
     CDS             complement(2239..2820)
                     /locus_tag="VGD38_14675"
                     /inference="COORDINATES: protein motif:HMM:NF042672.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6624 domain-containing protein"
                     /protein_id="HEY0729320.1"
                     /translation="MNHELRAELIKMDEHDQAVRAELAADGSLFEGYHPRMAAVHDAN
                     ATRLREIIAEFGWPTESLVGADGATAAHRIVQHSINHPEFMRECRELLDEASTKGEVP
                     RWQFAYIDDRIRAFEGLPQRYGTQWRDGTEGLEPYPIEDPDHVDERRAALGLLSLDEL
                     RASMPGEYVLDPETARQKQEEELAWRRAVGWIS"
     gene            2886..3335
                     /locus_tag="VGD38_14680"
     CDS             2886..3335
                     /locus_tag="VGD38_14680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729321.1"
                     /translation="MAKTDKPDARSGGETPPERFLDRHLGNAVHLFLSGLAILILVAA
                     AIATVEIIIRDVPMLWRGGSEYEALHQIIQDVLLVAIAAELALLFLFHRTSAAIEVLI
                     FVIARKMVLSGISGLELLAGVAALAGLVVIRFYFIPGHKKPTGEPKD"
     gene            3514..3678
                     /locus_tag="VGD38_14685"
     CDS             3514..3678
                     /locus_tag="VGD38_14685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729322.1"
                     /translation="MTKAAVPVSSEESFERFLRHCARYWAISPKRYPRGVFKFRTIEE
                     AQEARKKHSG"
     gene            complement(3767..>5635)
                     /locus_tag="VGD38_14690"
     CDS             complement(3767..>5635)
                     /locus_tag="VGD38_14690"
                     /inference="COORDINATES: protein motif:HMM:NF019912.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729323.1"
                     /translation="EPAGPLPAGMTGSDTEDPRAKLTPGVDNAGVAAMGIKHLFLLKK
                     PDAFQLGSDDPNDPKIQKILSQMGGAAAEIAKMPKAVQLVAAQLSFANSDLAFQGNHL
                     FQGNFYGLNIFDISNPSKPSLVTTMVCPGGQNDVSVYKNLLFTSVETANGRLDCGTQG
                     FPPAPPAPTPTPVAGQEVKPTPPPAQKDRFRGVRIFDITDIKNPKQVAAIQTCRGSHT
                     HTLVVDPNDKNNVYIYVSGTSYVRQNEELAGCSGEEPDKDPNTSLFRIDVIKVPLAAP
                     QNAQIVSSPRLFANQQTGAVSGLTSGATHGLEQPKATDQCHDITVYSAIGLAAGACSG
                     NGILIDIKDPVNPKRLDAVNDPNYAYWHSASFSNDGKKVLFTDEWGGGMAARCRANDP
                     NKWGADAIFTLDNNNKLKFASYYKLPAAQADSENCVAHNGSLIPVPGRDIVVQAWYQG
                     GISVMDFTDAERPVEIAYFDRGPMYPNLLVLGGHWSSYWYNGRIYASEIARGLDIFEL
                     EPSKFLTQNEIDAAKAVRVNELNVQNQQKIEWPRTLVVAKAYVDQLDRSQALPADQIG
                     SLRTAIQKAETSNLNKSSVANLKKLAPSLETAAGTKTGADATRLQALAQILKNPAR"
BASE COUNT         1101 a         1545 c         1635 g         1354 t
ORIGIN      
        1 ctcaatggaa cattggcgat cgcaagacgc tgctgcgcgg gctggccgcc gatcgcaaag
       61 gcacggttta cgctgttcac ggtggaggcg tcgcgcgtta caacggcgag actggcgaga
      121 agctcggcga actggcgtac gaacgatcgg gttttgacga tgtgtcggcg ggagcagacg
      181 gtggattggt taccgcgtgg cacagcaatc gagacgacat cgttacgttc gacgctaacg
      241 gcaaactcgt gcgcacgata cctgcggcga tcagcagcgc gagtggcgat tcagagttga
      301 gtatgcgcgt ggcggtcgac ggcgccggtt cgatttacgc actcggcagg ttcaacaatg
      361 cagtcttcaa attcggccgc gatgggaaat atattaatcg ctttggcggc tcaggcgatc
      421 agccggggca gtttcgtgcg gcgtattcga ttgcggtcga cggctacggc cgcgtttacg
      481 ttggcgatat caaaggcatt caggttttcg acgccgacgg ccgttatctg aatgtcataa
      541 agccgacagg catggcgttc ggcatggtct tcaacgacaa gaacgagctg tttgtcgtag
      601 cgcgcaaccg cgtgttgaag tactcgattc aggcgcagta aacgctcgcg atgcatagcg
      661 cgtttattca gtacatcttc ctgatcctga tcattctggc gctggtgatg atcgccaata
      721 agcttcgtct ggcttatccg atcgtgctgg tgctgggcgg attggcgctt agttttacgt
      781 cgcagttttc acacatcacc attcacccgg agctcgtctt cttcattttt cttccgccgc
      841 tgctttacga agcggcgtgg caagtgtcgt ggaaagagtt ttggcgatgg cgacggctga
      901 tcgcgggctt tgcctttccg attgtgatca ttaccgcgtg tgtgatcgcg tttgcttcgt
      961 atgcgctcat tcccgggttc acgttggctc tcggtttttt gcttggcggc atcgtctcgc
     1021 cgcccgatgc gatctccgca accacgatca tgcggcgcgt caacgtgccg aagtcgctcg
     1081 tgagcatcat tgaaggcgag agtttgctca acgatgcgtc gtcgctgatc gtgtttcgtt
     1141 tcgcgttggc ggcgatcatc accgggcagt tcgactttca ggaagcggcg ctcagttttg
     1201 tggtcgtaat cgtcatggga atcgtgatcg gtcttttgat cggactcgtc ttttacgcgg
     1261 tccatcgctg gctgccaact acgccgagca tcgagatcgt gctcacgctg gtgactccgt
     1321 attgcatgta ttacgtggcg gagacgtttc acttttcagg tgtgctggcg gtggtgagcg
     1381 gcgggctctt tttgtcgagc aagcggcaga cgctgcttag ctttcgcagc cggattgagg
     1441 gcgtgaacgt ttggaccaac ctcgtgtttg tgctgaacgg gttggtcttt ctgctcatcg
     1501 ggcttcagtt gcgttcgatc acgcagcagc ttggagacat aagcctgggc acggccattg
     1561 ggtatggatt gatcatttcg ctcgtgctga ttgtttcgcg attggcgtgc acgttgggag
     1621 cttcgatctt cagcacgttc atgagccgct ttataaccgt ggccgacgct catcccggtt
     1681 ggagaaatcc gctgattact ggttggtcgg gaatgcgcgg cgtcgtctcg cttgcagccg
     1741 cgctttcgat accattggtt gtgaacgtgg gacagccgtt tccttttcgc aacctgattt
     1801 tgtttattac tttcatcgtg attctggtca cgctggtgtt tcaggggctg acgcttccgt
     1861 gggtgatccg gacgataaaa ccggaagaca aatactccac aatgcccgag cctcagcagg
     1921 aactgatcat tcaaaagaag atcgccgagg cttcgctgca attcctgacg cagaagtacg
     1981 ggcgagagcg cgcgcacaac gagcacctga gcaacctgtt tgcgaaactg caaagcgatc
     2041 tgagatcgct cgagggcgag tcttccgaag ctaacgagaa ttcattagcg gagtatgaaa
     2101 cagtttacct cgaactgttg gagcggcagc gaaggctgtt gaatgagatg aaccggtcaa
     2161 atgacttcga cgaagatctt atccgcaagt atctttcgct gatcgacttt gaagaggtcg
     2221 agatccgcga gagaagagtc agctgatcca tcccacagcg cgacgccacg ccagctcctc
     2281 ttcctgcttc tgtcgcgctg tttccgggtc caaaacatac tctcccggca tcgaagcgcg
     2341 cagttcgtcg agtgaaagaa gaccgagcgc cgcccggcgt tcgtctacat gatcgggatc
     2401 ttcgatcgga taaggctcga gtccctccgt tccatcgcgc cactgcgttc cgtagcgctg
     2461 cggaagacct tcaaatgcgc gaatgcgatc gtcaatataa gcaaactgcc aacgcggcac
     2521 ctcgcctttc gtgcttgctt cgtccagcag ttcgcgacac tcgcgcatga actcaggatg
     2581 gttgatggag tgttgcacga tccgatgagc ggccgttgct ccatcagcgc cgacaagcga
     2641 ctcagtaggc caaccaaact ccgcgatgat ctcgcgcagg cgcgtcgcgt tcgcatcgtg
     2701 caccgcggcc atgcgcggat gatacccctc aaacagcgaa ccgtccgcgg caagctccgc
     2761 acgcacggcc tgatcgtgtt cgtccatctt tatcaattcc gcgcgcagtt cgtggttcac
     2821 cttgggccct cgttcgtgac tcttagtttg aaaagcagga agaatgatac tagtcttctc
     2881 gaatcatggc gaaaaccgat aagcccgacg cacgaagcgg aggcgaaact ccgcccgaac
     2941 gattcctcga tcgccacctg ggtaatgcgg tccatctttt tctctcaggt ctcgccattc
     3001 tgattctcgt tgccgccgca attgctacgg tagagatcat tattcgcgac gtaccaatgc
     3061 tgtggcgtgg aggcagtgag tacgaggccc ttcatcaaat cattcaggat gtcttgctgg
     3121 tcgcgattgc cgcggaactg gcgctgcttt ttctctttca ccgaacgagc gcggccatcg
     3181 aggtgctcat cttcgtcatc gcgcgcaaga tggtcctctc cggcatctcc ggtctcgaat
     3241 tactggccgg cgtcgccgcc ctggcgggcc tcgtagtaat tcgcttctac ttcatccccg
     3301 gccataaaaa gcccaccggc gaaccgaaag attgagaaga gcgaacgcgg ttgatggctg
     3361 cagccacaag aggcagaaaa ggcacaggag gcacaaagca ttcagaatat ttgtgcttct
     3421 tgtgcctctt tgtggcatgc tattcggcaa gcttgtgtaa cttaaacaat gaggggtgag
     3481 atgccggtac agaagtttcg ctcaatcgag gagatgacta aggcggctgt acctgtaagt
     3541 tcagaagagt cgttcgaacg tttcctgcga cattgtgctc gctactgggc catctcgccc
     3601 aagcgctacc cgcgtggtgt cttcaagttt cgcacgattg aagaagctca ggaagcacgc
     3661 aagaaacact caggctgaca acgcgcttct ctgtgtgagt taacactgca atgcgcggtt
     3721 gggtcggaag actcaaccgc gcatcgtagt gtttgaccac tgaggtttag cgtgccgggt
     3781 ttttcaggat ctgggccagg gcctgtaaac gggttgcgtc ggcgccagtc ttggtgccgg
     3841 cggcggtttc caatgacggt gcgagtttct ttaggttcgc aaccgaggat ttgttcaggt
     3901 ttgaagtctc cgctttttga atcgccgttc gcaaagatcc gatctgatcc gcgggcaggg
     3961 cttgcgagcg gtccagttga tccacgtaag ccttcgcaac gaccagcgtt cgcggccact
     4021 cgatcttctg ctggttctga acgttcaatt cgttaacacg aacagccttc gcagcgtcga
     4081 tctcgttctg cgtgagaaac ttcgacggct cgagttcgaa gatgtccaaa ccccgtgcga
     4141 tttccgaagc gtagatgcgg ccgttgtacc agtacgacga ccaatggcca ccaagcacga
     4201 gcaggttcgg atacattgga ccacgatcga aatacgcgat ctcaaccgga cgctctgcgt
     4261 cggtgaagtc catcaccgag atgccgccct ggtaccacgc ctgcaccacg atatcgcggc
     4321 cgggaaccgg aatcagcgaa ccgttatgcg ccacgcagtt ttcactgtcg gcttgcgccg
     4381 cgggcaactt gtaatagctc gcgaacttca gtttgttgtt gttgtccaaa gtgaagatcg
     4441 cgtcggcgcc ccacttgttc ggatcgtttg cgcggcaacg tgcggccatc ccgccgcccc
     4501 attcatcggt aaacaggacc ttctttccgt cattcgaaaa cgaagccgaa tgccaatacg
     4561 cgtagttcgg atcgttcaca gcgtcgagcc gtttcggatt cacagggtct ttgatgtcga
     4621 tcaggattcc gtttccggaa cacgcgcccg cggcgagacc gatcgctgag tagaccgtga
     4681 tgtcgtgaca ctggtctgtt gccttcggct gttccaggcc gtgcgtggcg ccgctagtca
     4741 aaccactcac cgcgccggtc tgttgattcg cgaacaagcg cggactcgag acgatctgcg
     4801 cattctgcgg cgccgcgagt ggcaccttga tcacgtcgat gcgaaacagc gatgtattcg
     4861 gatccttgtc aggctcctca cccgaacagc cggccaactc ttcgttttgc cggacgtagg
     4921 atgttcccga gacgtagatg tagacgttgt tcttgtcgtt aggatcgacg acgagcgtgt
     4981 gcgtgtgcga gccgcggcaa gtttgaattg ccgccacttg cttcggattc ttgatgtccg
     5041 tgatatcgaa gattctcacg ccgcgaaaac gatctttctg cgccggcgga ggtgtgggct
     5101 tcacctcttg tccggcgact ggcgtcggcg ttggcgcagg cggcgccggc gggaatccct
     5161 gcgtgccgca atcgagccgg ccgtttgccg tttccaccga cgtgaagagc aggtttttgt
     5221 aaaccgatac gtcgttctgt ccaccgggac agaccatcgt cgtcaccaaa ctcggtttgg
     5281 acgggttcga aatatcaaag atgttcaggc cgtagaagtt tccctgaaac aggtgattgc
     5341 cctgaaacgc gagatccgag tttgcaaacg aaagctgagc ggcgacgagc tgcaccgcct
     5401 ttggcatctt cgcgatctct gcggcggcac cacccatctg gctcaggatc ttctgtatct
     5461 tcggatcgtt tggatcgtcg gagccgagtt gaaacgcatc gggctttttg agcaggaaga
     5521 gatgcttgat gcccatcgct gctacgccgg cgttgtcgac gccgggtgtt agttttgcgc
     5581 gcgggtcttc agtgtctgag cccgtcattc ccgcagggag tggtccagcc ggttc
//
LOCUS       DASWTX010000967         2472 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_366333, whole genome shotgun sequence.
ACCESSION   DASWTX010000967 DASWTX010000000
VERSION     DASWTX010000967.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2472)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2472)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2472
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_366333"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1761
                     /gene="asnB"
                     /locus_tag="VGD38_14695"
     CDS             <1..1761
                     /gene="asnB"
                     /locus_tag="VGD38_14695"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HEY0729324.1"
                     /translation="WQPLYNEDHTLALVANGEIYNFVELRKDLESRGHRFNTHSDCET
                     ILHLYEEHGLDFVQHLRGMYAFALWDSKRKRVVLARDRMGEKPLYLYETNGRVLFASE
                     IKALLASGLVPFELDPASVHHYFHYQYVPEPRTPLKGVRKLDAASMLIVDVEPWRVEE
                     RCYWRMEDAPPIEGDPARLIREQLETVSEIVIRSDVPVGIALSGGLDSSAIAALAARK
                     YPGTMHAFSVGYPGGLENDERKDARALADYLGMPFHDVELTTSEMISFFPELVYLRDD
                     PIADIAGFGYYSVNRLAREHNVPVILQGQGGDELFWGYPWVRDAAKQTARKISLRDRN
                     SLAALPQYLELSLPTGISRYEFWQWARQGGGLRPAWQSFQRDRATPANQFVFYDSTSE
                     FSLAANQMARLYSPRFREQLNGASAVNLFTYDEPSANTEVAITKLICDTYLRENGITQ
                     GDRLSMASSIELRLPFLDHRLIETVIGLRKAHSDIDEPPKARLNAAIKDLLPDWVMNR
                     PKRGFTPPVREWQNTLLKTYGDSMKDGFLTSHGVLNEAGAQQLTTAELPFDELAPISF
                     RALVLEHWCRRMHADSKNHN"
     gene            1736..>2472
                     /locus_tag="VGD38_14700"
     CDS             1736..>2472
                     /locus_tag="VGD38_14700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729325.1"
                     /translation="MRIQRITTNYPAYLSRFFAKRPHLASLSFAEQHAALMADACGWA
                     DFWSVALEKLGYDMVETVSNVESMQKAWASENGVEYAPENWMFEITTAQVRAFKPDVL
                     FVNDYATFTAAYLSYLKSACPSIRLVLGWCGAPYTDASVFKEYDVVLSSAPELVQHFI
                     DQGHRSALIKHAFEPRVLQKLDSVAARPAEFAFIGSIAKKQGFHHEREALLLRLLAET
                     PLELWTTVSPTSWSLSANIRSRQLMYD"
BASE COUNT          497 a          703 c          742 g          530 t
ORIGIN      
        1 tggcagcctc tctacaacga agatcacaca ctcgcgctcg tcgcaaacgg agagatctac
       61 aacttcgtcg agttgcgcaa ggatctcgaa agccgcggcc accgcttcaa cacgcacagc
      121 gactgcgaaa cgatcctgca cctctacgaa gaacacggtc tcgacttcgt gcagcacctg
      181 cgcggcatgt atgcgtttgc tttgtgggat tcgaagcgca agcgagtcgt gctcgcacgc
      241 gatcgcatgg gcgagaagcc gttgtatctc tacgagacca acgggcgcgt gttgtttgcg
      301 tcggagataa aagcgctgct tgcttcgggt ctcgtgccgt ttgaactcga tccggcttcg
      361 gttcatcact actttcacta tcaatacgtg cccgagccgc ggacgccgct gaaaggcgtg
      421 cgcaagctgg acgcggcatc gatgttgatt gtcgatgttg agccgtggcg cgtggaagag
      481 cgttgctact ggcgcatgga agacgcgccg cccatcgaag gcgatccggc acggttgatt
      541 cgcgaacaac tcgaaaccgt gagcgagatc gtgatccgtt ccgacgttcc cgtgggcatc
      601 gcgttgagcg gcggtctcga ttcgagtgcg atcgcggcgt tggccgcgcg caagtatccg
      661 ggcacgatgc acgcattcag cgtgggttat ccgggcggtc tcgagaacga cgaacgcaaa
      721 gacgcacgtg cactcgccga ttacctcggc atgccgtttc acgacgtcga gctcacgacg
      781 agtgaaatga tctcgttctt tcccgagctc gtttacctgc gcgacgatcc gatcgccgac
      841 atcgccgggt ttggttacta ctcggtaaac agactcgcac gcgaacacaa cgtccccgtg
      901 atcctgcagg gccagggcgg cgacgagctt ttctggggtt atccgtgggt acgcgacgca
      961 gcgaagcaaa ccgcacgaaa gatttctctg cgcgatcgta attcccttgc cgcgttgccg
     1021 cagtatctcg agttgtcgct gccgaccggg atttcgcgtt acgagttctg gcaatgggcg
     1081 cggcaaggcg ggggtctgcg tccggcgtgg cagagttttc aacgcgaccg cgcgacgccc
     1141 gcgaatcagt ttgtttttta cgattcgact tccgagtttt cattggcagc gaatcagatg
     1201 gcgcgacttt attcgccccg ctttcgcgag cagttaaacg gcgcttcggc ggtgaacctg
     1261 tttacttacg acgaaccgtc agcaaatacg gaagtcgcga ttacaaaact gatctgcgac
     1321 acgtacctgc gcgaaaacgg aatcacgcaa ggcgatcgtt tgagcatggc gtcgtcgatc
     1381 gagttgcgct tgccgtttct ggaccaccgg ctgatcgaga ctgtgatcgg tttgcgcaaa
     1441 gcgcacagcg acatcgacga gcctccgaaa gcgcggctga atgcggcgat caaagacctg
     1501 ttgcccgact gggtaatgaa ccggccgaag cgaggcttca cgccgccggt tcgcgaatgg
     1561 caaaacacgt tgctgaaaac ttacggcgac tcgatgaagg atggattcct gacaagccac
     1621 ggcgtgctca acgaggccgg cgcgcaacag ttgaccacgg ccgagcttcc gtttgacgaa
     1681 cttgcgccga tttcttttcg cgccctggtg ctcgagcact ggtgccggcg aatgcatgcg
     1741 gattcaaaga atcacaacta actatccggc ttacctgagc aggttcttcg cgaagagacc
     1801 tcacttagct tcgctgagct tcgcggagca gcatgcggcg ttgatggccg acgcgtgcgg
     1861 ctgggccgat ttctggtcgg tcgcgctcga aaagctcggc tacgacatgg tcgagactgt
     1921 ttcgaacgtc gagtcgatgc agaaggcgtg ggccagtgaa aacggcgtcg agtatgcgcc
     1981 cgagaactgg atgtttgaga tcacgaccgc gcaggtacgc gcgttcaaac cggacgtgct
     2041 tttcgttaac gactacgcca cgtttacggc tgcatatctc agttatttga agtctgcgtg
     2101 cccgtcgatc aggttggttc tcggttggtg tggcgcgcct tacaccgacg cgtctgtgtt
     2161 caaggaatac gacgtcgttc tttcgagcgc gccggagctg gttcaacact tcatcgatca
     2221 gggtcatcgc agtgcgctga tcaagcacgc gttcgagccg cgcgttttgc agaaactcga
     2281 ttcggtcgcg gccaggcccg cggagttcgc tttcatcggc agcatcgcga agaaacaggg
     2341 cttccaccac gaacgcgaag cgctgttgct gcggctgctt gcggaaacac cgctcgaact
     2401 gtggacgaca gtttcgccta cgtcgtggag tctctcggct aatattcgca gccgccagtt
     2461 gatgtatgat tt
//
LOCUS       DASWTX010000968         2253 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_141868, whole genome shotgun sequence.
ACCESSION   DASWTX010000968 DASWTX010000000
VERSION     DASWTX010000968.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_141868"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..307)
                     /locus_tag="VGD38_14705"
     CDS             complement(<1..307)
                     /locus_tag="VGD38_14705"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HEY0729326.1"
                     /translation="MTTSGQTTDCRNDWPNLARYGEANKNVAPPEKNEQRVVFMGDSI
                     TDSWDDPVYGGFFPGKPYINRGISGQTTPQMLIRFRPDVLALKPKVVVILAGTNDIAG
                     "
     gene            complement(350..1354)
                     /locus_tag="VGD38_14710"
     CDS             complement(350..1354)
                     /locus_tag="VGD38_14710"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0729327.1"
                     /translation="MSHGFSQTNTELVRVIGVSPWQRLLNRVGPVLGLLLVIGIFSLL
                     MDTPARFLSPNNLRIVLSQTVIVAIGAIGMTMIIISGGIDLAVGSTIALTGVVTALAI
                     NAGFSPATALAAGIAVGGLVGVVNGLVITRLKVVPFIATLGMLGVARGIAKWLANQQT
                     VNMPGTWLNELLVMFPDPPWLLVAPGVWIAIVLAICAAIVLRNTVFGRRVFALGSNEA
                     AARACGIATDRLKVWIYGLAGLLFGLAGVMQMSRLRQGDPTVAAGSELDIIAAVVIGG
                     GSLNGGEGSITGSMIGALIMAFLRNGCQQIGWPNYIQEIIIGAIIVVAVAIDRWRTRS
                     "
     gene            complement(1351..>2253)
                     /locus_tag="VGD38_14715"
     CDS             complement(1351..>2253)
                     /locus_tag="VGD38_14715"
                     /inference="COORDINATES: protein motif:HMM:NF024799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEY0729328.1"
                     /translation="IAVIPKGTTHEFWKSIHAGSNKAAAELTSLGTDVEVIWKGPLRE
                     DDREQQIQVVEGFAAQGVNGIVLAPLDDRALARPVSDAKRAGVPTVIIDSGLQSTDFV
                     SFVATDNRRGGSLAAERMGQLLNGKGKVLVLRYAEGSASTSEREAGFIDTIKQKFPEI
                     ELVSTDQYAGATRDTAKRASENLLNRFSDEVQGIFTPNESSTAGMLLALQDIGKAGKV
                     SFVGFDVSQQFIDALNAGQLHGIVVQNPFNMGYLGVKTMVESLLGKPVANRIDTGVML
                     VTKENMSSPEVNELLHPPLDQYLK"
BASE COUNT          483 a          732 c          595 g          443 t
ORIGIN      
        1 tgccggcgat atcattcgtg ccggcgagta tgacgacgac ttttggtttg agtgcgagaa
       61 cgtcgggacg gaagcgaatc agcatttgcg gtgttgtctg gccgctgatg ccgcgattga
      121 tgtaaggctt gccgggaaag aagccgccgt aaacgggatc gtcccacgaa tcggtgatcg
      181 agtcgcccat gaagacgacg cgctgttcgt tcttttcggg tggcgcgacg ttcttgttgg
      241 cttcgccgta gcgggcgagg ttgggccaat cgttccgaca atccgtggtt tggcctgacg
      301 ttgtcaccac aaataaacac agacaacaca cgatcgactt aaccataatt tagctccgtg
      361 ttcgccagcg atcgatcgcg acggcgacga cgatgatcgc gccgatgatg atctcctgga
      421 tgtagttggg ccaaccgatc tgctggcagc cgtttcgtaa gaacgccatt atcaaagcgc
      481 cgatcatcga tcccgtgatg ctgccctcgc cgccgttcag actgccgccg ccgatcacga
      541 ccgccgcgat gatgtctaac tccgaaccgg ccgcgactgt cggatcgccc tggcgcaaac
      601 gcgacatctg catcacgcct gctaaaccaa acagcagtcc ggcgagtccg tagatccaga
      661 ccttcaaacg atcggtcgca atgccgcacg cgcgcgccgc ggcttcgttc gacccgagcg
      721 caaacacgcg ccggccaaac accgtgttgc gtaaaacgat cgccgcgcag atggcaagca
      781 cgatcgcgat ccaaacaccg ggcgcgacga gcagccacgg cggatcggga aacatcacga
      841 gcaactcgtt caaccacgtg cccggcatgt tcacggtctg ttggttcgcg agccacttcg
      901 cgatgccgcg cgcaacgccg agcattccga gtgtcgcgat gaacggcacc accttcaaac
      961 gcgtgatcac caagccgttc accacaccca ccaaaccgcc caccgcaatt cccgcagcca
     1021 aagccgtggc cggcgagaag cccgcattaa tcgcgagcgc agtaaccacg cccgtcaaag
     1081 cgatcgtcga ccccaccgca agatcgatac cgccactaat aatgatcatc gtcatgccga
     1141 tcgcgccaat cgccacgatg accgtctgtg aaagaacaat gcgcaaatta ttcggcgaca
     1201 aaaaccgcgc cggcgtatcc atcaacaacg aaaagatccc aatcaccaac aacagcccca
     1261 gcaccggccc cacgcggttc agaagtctct gccacggact aacaccgatg acacggacta
     1321 attctgtgtt ggtctgtgaa aatccgtggc tcattttaga tactggtcca acggcgggtg
     1381 caacagctcg ttcacctccg gtgacgacat attttctttc gtgaccagca tgacgcccgt
     1441 gtcgatccgg tttgcgacgg gtttgcccag gagactttcg accatcgtct tcacgccgag
     1501 gtagcccatg ttgaatgggt tctggaccac gatgccgtgc aactgcccgg cattcagtgc
     1561 gtcgatgaat tgctggctca cgtcgaagcc gacaaacgaa accttacccg ctttgccaat
     1621 atcctgaagc gccagcaaca tccccgcggt cgacgattcg ttcggcgtga aaatcccctg
     1681 cacttcatca ctaaaacgat tcaacaggtt ctccgacgcg cgtttcgcag tgtcgcgcgt
     1741 cgcacccgcg tactgatccg ttgagacgag ctcgatctcc ggaaacttct gtttgatcgt
     1801 gtcgataaac ccggcttctc tttcactcgt actcgccgat ccttccgcgt agcgcaacac
     1861 gagcactttg cctttgccgt tgagcagttg gcccatgcgc tccgccgcga gcgatccgcc
     1921 tctgcgattg tcagtcgcga cgaagctcac gaagtctgtc gattgcaaac cggagtcgat
     1981 gatcacggtt ggcacacccg cgcgtttcgc gtcgctgacc ggacgcgcaa gcgcgcgatc
     2041 gtcgagcggc gcgagcacga tgccgttcac accctgcgcc gcgaatcctt caacaacctg
     2101 gatctgctgc tcgcgatcgt cttcgcgcaa cgggcccttc caaatcacct cgacgtccgt
     2161 gcccagcgac gtgagctcag ccgcggcctt gttgctgccc gcgtgaatgc tcttccaaaa
     2221 ctcgtgcgtc gtgcctttcg gaatcaccgc gat
//
LOCUS       DASWTX010000969         2951 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_206825, whole genome shotgun sequence.
ACCESSION   DASWTX010000969 DASWTX010000000
VERSION     DASWTX010000969.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2951
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206825"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..803)
                     /locus_tag="VGD38_14720"
     CDS             complement(<1..803)
                     /locus_tag="VGD38_14720"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY0729329.1"
                     /translation="MQKLAEICIRRPVFASMIVLSLVVVGAAGFFRLGVDRFPSVDLP
                     TVSVRVGLPGAAPEEVESLVTQQIEEVVNTVDGISELRSVSGQGTSLVIATFKLDRNL
                     ESAAQDVRDRVNTLGRRLPEDSTPPVVQKFDNDSTPVLTIALSADRSLRELTELADKT
                     VRVQLERVGGVGEVRVVGGLDRAINVWIDAERLAAYQISIADIRDALQRQNADVPGGN
                     VTTGKEELVLRTMGRFTEPRQFDDLVIANVNGAPVKLRDVGRVEDGTKE"
     gene            complement(825..2027)
                     /locus_tag="VGD38_14725"
     CDS             complement(825..2027)
                     /locus_tag="VGD38_14725"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEY0729330.1"
                     /translation="MSNWLKVFLFVATALFFVSCKSDYQASQRQNRGGDNRAARKVKT
                     TAVAETPFGETVTANGTLAAFDQTTVSVKVPGRVRTISVDLGSVVRRGQVIAQVDSQD
                     YHLRVQQAEAALAQARARLGLSLEGNDDRIDPEKTSTVRQARAVYDEARFNRDRAARL
                     VEQGVIAKAEFDSANAAFKVAEGRYQDAYEEVRNRQGILAQRKSELDLARQQLKDTSV
                     VAPLDGVVQEKRASVGEYMAAGAPVVNIVRMDPLRLRAEIPERESRTVRTGQDVRVTV
                     EGDTNVYLGKIMRLSPVIAEQNRMLLVEADVRNNGTLRPGSFAHAEIVTNDAKMAVTV
                     PNNAIVTFAGIEKVILVQNGKALERPITTGRRSAEFTEIVAGVNVGEKVIVDPGNLQS
                     GQAVEVVE"
     gene            complement(2176..>2951)
                     /locus_tag="VGD38_14730"
     CDS             complement(2176..>2951)
                     /locus_tag="VGD38_14730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729331.1"
                     /translation="GRMYIWESENLVELQLPRNSWAGVWWEPGYERLFDHEFGPTREA
                     KPCNPFAVVNGCTFYGEDNERNSNKQHLSFYGGSNFSKKIQFNAQVTHRWGHFDFDFG
                     NGDKYPRVSPAALSLGQLAPLDPGRGSLLQFNGSVTYQPTNVLRTSFSINSQRLRRYD
                     TDRVAFDVKILTLRGTYQFTKATFARLILDYNTLNSRLRSQALLGWTPSPGTAFYAGY
                     NDDLNYDSRHPFTREVVPGFRRNTRTFFIKMSYLIRRGF"
BASE COUNT          600 a          877 c          830 g          644 t
ORIGIN      
        1 tgttctttcg ttccgtcttc aacgcggccg acgtcgcgca gttttaccgg cgcgccattg
       61 acgtttgcga taaccaggtc gtcaaactgc cgcggctcgg tgaaccggcc catcgttctg
      121 agcaccagtt cttcttttcc ggtggttaca tttccaccgg gcacgtccgc gttctgacgt
      181 tgcagcgcgt cgcggatgtc ggcgattgaa atctgataag cagcgagccg ttctgcgtcg
      241 atccaaacgt taatcgcgcg atcgagacca ccgactacac gcacttcgcc gacgccgccg
      301 acgcgttcga gctgaacgcg aactgtctta tctgcgagtt ccgtgagttc gcgcagcgag
      361 cgatccgctg agagcgcgat cgtcaacacc ggcgtgctgt cgttatcaaa cttctgcacg
      421 accggcggtg tcgagtcttc cggcaaccgg cggcccaacg tgttcacacg atcgcgaacg
      481 tcctgggccg cggattcgag attgcggtcc agcttgaacg tcgcgatcac cagcgacgtg
      541 ccctgtcctg aaacggagcg caactcgctg atgccgtcga cagtgtttac gacttcttcg
      601 atctgttgcg tgacgagtga ttcgacttct tccggcgccg cgcccggcaa accgacgcga
      661 actgaaaccg tgggcaggtc aactgaagga aagcgatcta cgccgagccg gaaaaagccc
      721 gccgccccga ctaccaccag cgacaacacg atcattgacg cgaagacagg acggcgaata
      781 catatctcgg ctaacttctg catgattgat taggctaata aaggctattc gacaacttcg
      841 acagcctgac ctgactgtag gttgcccgga tcgactatta ctttctcgcc aacattcaca
      901 ccagcaacga tttccgtgaa ttcagcgcta cggcgtccgg tagtaatcgg gcgctcgagt
      961 gctttaccgt tttgcaccag aataactttt tcgatacccg cgaatgtcac gatcgcgttg
     1021 ttcggcacag tcacggccat cttcgcgtcg ttcgtcacga tctcggcgtg cgcaaatgag
     1081 ccggggcgca gcgtgccgtt gtttcgaacg tcggcttcga ccagcagcat gcggttttgt
     1141 tccgctatca ctggactcag gcgcatgatc ttgccgaggt aaacattcgt gtcgccttcg
     1201 acggtcacgc gaacgtcctg gcctgtgcgc acagtacgtg attcgcgttc gggaatctcg
     1261 gcgcgcaagc gcagcggatc catgcgcacg atgttcacga ccggcgcgcc cgcggccatg
     1321 tattcgccga cgctggcccg cttttcctgc acgacgccat cgagcggtgc aacgactgag
     1381 gtgtctttta attgttggcg cgccagatcg agctcagact tgcgttgggc cagaatgccc
     1441 tggcggttac gaacctcttc gtaagcgtcc tggtaacgtc cttcggcgac tttgaaagcc
     1501 gcgtttgccg agtcaaattc tgctttcgcg atcacgccct gttcgaccag tcgcgctgcg
     1561 cggtcgcgat tgaatctcgc ttcgtcgtag accgcgcgcg cctggcgcac ggtagaagtc
     1621 ttttcgggat cgatccggtc gtcgttgcct tcgagcgaca aaccaagacg cgcgcgtgcc
     1681 tgcgcgagtg cggcttcggc ctgttggacg cgcaggtgat agtcctgtga atcaacctgt
     1741 gcgatgacct gtccgcggcg cacgaccgat ccgagatcga cggagatcgt tctcactcgt
     1801 ccggggacct ttacgctgac agtggtttga tcgaaagcgg cgagggtgcc gttggcggtg
     1861 acagtttcgc caaacggagt ctccgcgaca gcggtggttt ttacttttcg agcggcgcga
     1921 ttatcgcccc cacgattctg tctctgcgac gcctggtagt cgctcttgca cgacacgaaa
     1981 aagagcgccg tggctacaaa tagaaatact ttcagccagt tagacattcg gtggagttta
     2041 acacgcagtc gggccaacca aataatcgcg agctaaaccg ttcgacctgt ttacacgcat
     2101 gccacaaaga ggcacaagga gcacaaaagg ttcgctgaca gtcgtgtgcc ttttgtgctt
     2161 ctttgcggct atgactcaga aaccacggcg gattaggtag gacatcttga taaagaacgt
     2221 acgcgtgttg cggcggaagc cggggacgac ctcgcgggtg aaggggtggc ggctgtcgta
     2281 gttcaggtcg tcgttatagc cggcgtaaaa agccgttccc ggactcggcg tccaacccaa
     2341 cagcgcctgc gatcgcaaac gcgagttcag cgtgttgtag tcgagaatca atcgcgcaaa
     2401 agtcgccttc gtgaactggt acgtgccgcg cagcgtcagg atcttgacgt cgaaagcgac
     2461 gcgatccgtg tcgtaacgcc gcaaccgttg cgagttgatg ctgaacgaag tgcgtaatac
     2521 attcgtcggc tgatacgtga cactgccgtt gaactgcaac aagctgccgc ggccgggatc
     2581 gagcggcgcc aactgcccca acgacaaagc cgccggactt acgcgcggat acttatcgcc
     2641 gttgccgaag tcgaaatcga aatgccccca ccgatgcgtc acctgcgcgt tgaactgaat
     2701 cttcttgctg aagttcgaac ctccataaaa cgacaggtgc tgcttgttcg aattgcgctc
     2761 gttgtcctcg ccgtaaaaag tgcagccatt cacaaccgca aacggattgc acggcttggc
     2821 ttcccgcgtt ggaccaaatt cgtgatcgaa caagcgctcg taacccggtt cccaccaaac
     2881 accggcccaa ctgttgcgcg gtagttgtaa ctcgacgaga ttttcactct cccagatgta
     2941 catccggccc t
//
LOCUS       DASWTX010000970         3962 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_168141, whole genome shotgun sequence.
ACCESSION   DASWTX010000970 DASWTX010000000
VERSION     DASWTX010000970.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3962)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3962)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3962
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168141"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..668)
                     /locus_tag="VGD38_14735"
     CDS             complement(<1..668)
                     /locus_tag="VGD38_14735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HEY0729332.1"
                     /translation="MLCEETRQSLSQYVDDCVSLPARVAIEEHLDRCPVCRDEAIELR
                     SLRRSLSLLRAPTPPPDLAATISDALAIEAAAQGQQPNPSLGHRIRRFVEPWVMPYSA
                     GSFASVVMFFMMFAALRPHFVALREAAAQQRSDVTMVRAVPGYDLYQPVGAGLAAERA
                     PFAVESPTLNPGGALAALTVSFTRTPAELDGDDDDMIVGIDVFSNGFASLANVVQPPR
                     DKRM"
     gene            complement(925..1473)
                     /locus_tag="VGD38_14740"
     CDS             complement(925..1473)
                     /locus_tag="VGD38_14740"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0729333.1"
                     /translation="MKRGDSAAFETLVNERSGEIYGLLYRLTESSEEARDLTQETFLR
                     AFQSIGHFRGESDLRTWIYRIAINQARNRWRWWRRRRRDVTVSIDAPQPNGTASLIGT
                     LKSDNGRNPETDALAHERERALRKALGSLKRVYREAVVLRDIEGFAYEEIALALDISV
                     GTVKSRLARGRQELRRKLEGSL"
     gene            1840..2649
                     /locus_tag="VGD38_14745"
     CDS             1840..2649
                     /locus_tag="VGD38_14745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729334.1"
                     /translation="MAKYNKKRVRQLQHDRFRDTTMGFFDHLGELLEGKGRTILYALG
                     GVILAGVLVLVFVRWSNKKADEASQALGRAITISTASINPTPIAGSTEPAFGTEYDRS
                     QRAIEEFEKVAAKYGDPYRSQARYFIASNRLLVDRAKGLTELGELSNSSVPEVAALSK
                     FALAQAKESDGKLDEAAQLYSDLAKLNSTSVPAETANLRLAKVYSKQGKKKEAVDVLF
                     NLVDASRKAKGENNQPAPVSSAAREAATELQKLDPERYSQLPPETPPSLLG"
     gene            2680..3840
                     /locus_tag="VGD38_14750"
     CDS             2680..3840
                     /locus_tag="VGD38_14750"
                     /inference="COORDINATES: protein motif:HMM:NF016214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEY0729335.1"
                     /translation="MDNLTHSLVGLTAAKAGLERLSPGATVLCVLAANSPDSDIIVLA
                     FGDRWDFLQHHRGITHAIVGTVFLALLLPLIFVGVDRLWARFRHRSPTTRFRGLLIAS
                     LIVSATHPLLDWTNNYGVRFLLPWSPRWSYGDLVFIVDPFIWVVLGGAAFLLASRTKV
                     YKFVWATLAAVITFLILFSARGGDLPHRNLIVGLWIAAIAAIIGLFVMGARERWGAKI
                     GIVALGLVVAYWCALAFAHSFAVERGWEEANRLVAPNGETVARLAAMPTLANPLRWDC
                     VFETDQATYRFPVVLNGETPAGRVIRYPKPTGQLAAALEAASQEKAARVFLGFARFPV
                     ARLADPSCTTQTLLRLADLRYTEPGTSRGTFAVDLPVDCPEQGSTGTPMVGR"
BASE COUNT          821 a         1208 c         1100 g          833 t
ORIGIN      
        1 aacatgcgct tgtcgcgcgg cggttggacc acattggcga gcgacgcgaa cccattactg
       61 aaaacgtcga tacccacgat catgtcgtca tcgtcaccgt cgagctccgc gggcgtacgt
      121 gtaaaggaaa ccgtgagcgc agccagtgcg cctcccggat tcagagtcgg cgattcaacc
      181 gcgaaaggag cgcgttcggc cgctagacct gccccaaccg gttggtaaag atcgtaaccc
      241 ggtacggccc gaaccatcgt cacatcgctg cgttgctgtg ccgctgcttc acgcaacgcc
      301 acaaagtgcg gacgaagcgc cgcgaacatc atgaagaaca tcacgactga ggcaaacgat
      361 ccggcgctgt aaggcatcac ccacggttcg acgaaacgcc gtatacgatg gcccagcgaa
      421 ggattcggct gctgcccttg agccgctgct tcaatcgcga gcgcgtcgga gatggttgct
      481 gccagatccg gaggcggtgt gggcgctctc aacaaactca agctacgccg caacgaacgc
      541 agctcaatcg cttcatcccg gcacaccgga caacgatcga gatgttcctc gatcgctacc
      601 cgcgcgggca aggagacaca atcgtcaacg tactgtgaaa gcgactgtct ggtttcttcg
      661 cacaacataa gtaaatccaa tactggttac ggatggctgg ccgaccccgg ctgctccctt
      721 tcgacaaaga gcaactccga caagttctgg gcaacccctc caggcttgag tgagcgagct
      781 tcaacgggtg ttgctggcca cgttttcaat acgcccttca tgccactgcg gaagcctttg
      841 atcccgccgt ttcctcactt cgacccattt ggcaccgagt tttgtgagcc ggggcgggtc
      901 agccatcctg atcccaatcg gcaattacaa agatccttcc agcttacgcc ggagttcctg
      961 acgtccacgc gcgagtcggg atttaaccgt tccaacactt atatcgagcg ctaatgctat
     1021 ctcttcgtac gcgaaccctt caatatctct taacactaca gcttctctat aaacgcgctt
     1081 caaagaaccg agtgcttttc gcagcgcccg ctcgcgctcg tgagccaggg catcagtctc
     1141 aggattgcgg ccgttgtccg atttgagcgt cccaatcaac gatgccgttc cgtttggttg
     1201 gggcgcgtca atcgagaccg tcacatcacg ccgccgcctg cgccaccagc gccaccggtt
     1261 gcgggcctgg ttgatcgcga tgcgataaat ccaggtgcgc aggtccgact cgccgcgaaa
     1321 gtgaccaatg ctctgaaacg cccgcaagaa cgtttcctgc gtcaggtcgc gggcttcctc
     1381 gctgctctca gtcagccggt aaagcagccc gtaaatctca cccgagcgct cgttaacgag
     1441 tgtctcgaag gccgccgagt caccgcgctt caatctttca acgaactggg cctctatctg
     1501 agcccgcgcc tctcccaggg tcgccggagc aacctgctcc atttcaattt gcccgcggag
     1561 ggctattggc tctccgtagc tcactgatca ccccctgggg cgggaaccag agcattcaac
     1621 aaattttgcc cattcccgga caggcaaccg cttagacacc cgcgctgccg tatttgttcc
     1681 caaaaaaatt ccatcgtgtg tcaaattccg cccaggtctt agatgcgttc gtgcgttcgc
     1741 ggttgacaac ttttccgacg cgacattaga gtgacaattt cgctaatcat acacccaaga
     1801 gaacgcagcc gactatattg gcttgcaaga gggaaccaag tggcaaagta caacaaaaag
     1861 cgggtccggc aactgcaaca cgaccgcttc cgcgatacaa caatgggctt cttcgaccac
     1921 ctcggcgagt tgctggaggg gaaaggacgc acgatcctgt acgctctggg cggcgtgatc
     1981 ctggccggcg tcctggtgtt agtctttgtt agatggagta ataagaaggc tgacgaagcc
     2041 agtcaggcgc tcggccgggc gatcacgatc tccaccgcca gtatcaaccc gacgccaatc
     2101 gccggcagca cggaacccgc tttcggcacc gaatacgacc ggtcgcagcg cgccatcgag
     2161 gagtttgaga aggtcgcggc gaagtatggc gacccctatc gctcgcaagc ccgctatttc
     2221 atcgcctcga accgtttgct ggtcgaccgc gccaaaggct tgactgaact gggcgagctc
     2281 tcgaacagca gtgttccgga ggttgcggcg ctatcgaagt tcgcgcttgc ccaggcgaaa
     2341 gagagtgacg gcaaactcga cgaagccgca cagctctaca gcgacctcgc caaactaaac
     2401 agcaccagcg tgcctgccga gactgccaat ctgcgtctcg cgaaggttta ctcgaaacaa
     2461 ggcaagaaga aagaagccgt cgacgttctc ttcaacctcg tcgatgcgtc gcgcaaggcg
     2521 aaaggcgaga acaaccaacc cgcccccgtt tcgtccgcgg ctcgagaagc cgccacggaa
     2581 ctgcaaaaac tcgatccgga acgttactcc cagcttccgc ctgagacccc accgtcgtta
     2641 cttggttagg tctgaaattg cgcggaggac gaacccggct tggacaatct tacgcattca
     2701 ctcgtcggtc tcactgcagc caaggcgggt ttggaaagat tgtcacccgg cgcgacagtc
     2761 ctctgcgttc tcgcggctaa ctcacccgat tccgacatca tagttttggc gttcggagat
     2821 cgttgggact ttcttcagca tcatcgcggc atcactcacg caatcgtcgg cactgtattt
     2881 cttgcgttgc tgttgccgct gatctttgtc ggcgtcgatc gtttatgggc gcgattccga
     2941 caccgatctc caacaacaag atttcgcggt ttgctgatcg cgtcgttgat cgtgagtgcg
     3001 acgcatccgt tgcttgattg gaccaacaac tacggcgttc ggttcttgtt gccgtggagt
     3061 ccgcgctggt cctacggcga tctggttttc attgtcgatc cgtttatctg ggtcgtgctc
     3121 ggcggcgcgg cgtttctgct ggcttcgcga acgaaggttt acaaattcgt ctgggccaca
     3181 ctcgcggccg tcatcacatt cctgatcctt ttcagcgcgc gcggcggcga cttgccgcac
     3241 cgcaacttga tcgtgggttt atggatcgcg gcaatcgcgg cgattatcgg attgtttgtg
     3301 atgggggcgc gcgaacgttg gggggcgaaa atcgggatcg tcgcgcttgg gttggttgtc
     3361 gcttactggt gcgcactcgc tttcgctcac tcattcgctg tcgaaagagg atgggaagaa
     3421 gcgaaccgcc tcgtcgcgcc taacggggaa actgtagcga gactcgcggc gatgccgaca
     3481 ctggccaatc cactgcggtg ggactgcgtc tttgaaaccg atcaagccac ctaccggttt
     3541 cccgtcgtgt tgaacggtga aacacccgcc ggccgcgtga ttcgctatcc gaaaccgacc
     3601 gggcaattgg ccgcggcgct ggaagccgct tcacaggaaa aggcggcgcg cgtgtttctc
     3661 ggttttgcga gatttcccgt cgcgcgtctt gccgatccca gttgcacgac gcagaccctc
     3721 ctgcgattgg ctgatctgcg ttacactgaa cccggcacat cgcgaggcac tttcgctgta
     3781 gatttgccgg ttgattgccc ggagcagggt tccacgggga ctccaatggt gggcagatga
     3841 gtgaaccaag agagttaaat agtctgcccg ctctaaccgg ggtaaaagac gaacgtgaac
     3901 gagcactgaa gcgcgcaccg atcgccagtg tgcgtgtctc gcctggtccg tatctcgccg
     3961 tc
//
LOCUS       DASWTX010000971         2512 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_122017, whole genome shotgun sequence.
ACCESSION   DASWTX010000971 DASWTX010000000
VERSION     DASWTX010000971.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2512
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122017"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..801
                     /locus_tag="VGD38_14755"
     CDS             <1..801
                     /locus_tag="VGD38_14755"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEY0729336.1"
                     /translation="DNAILVIGGDIAAKDGFALATKYFGDWQKPTTPLPSVDGATKAT
                     APKAGRIVVIDKPDAGQAAVYLARTGINRRDPDYFRGIVTNSVLSGYSGRLNQEIRIK
                     RGLSYGAGSQLDTRRDVGPFVASAQTKNESGAQVADLLLGEIGRLSSAPPADVELTPR
                     KAVLIGGFSRNLETVNGLVSQLASLALYGLSLDEINRYINNVQSITTADVQKFAGTRL
                     DAKTSNIIIVGNAKLFLPELQKKYPNVEVIPMTELDLNTALLRKKQQP"
     gene            798..1421
                     /locus_tag="VGD38_14760"
     CDS             798..1421
                     /locus_tag="VGD38_14760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729337.1"
                     /translation="MKSVLSILIILLPLGFASATYAQTADIDGVDARSNPAEFAKGLS
                     SLDANVRRRSAEALARLAATDQRKLVEGYHFQEKNKEVRLALDWALYRMGRAEALYRV
                     VDDLDSGRQDQAIGYLSELESPDLLYPFLKKTNNPPRVNAGLLKALARIGDAQSLDLI
                     KTFRESHQPYVAEAAEIAHDEIEKRLAEPAAATRARPRTVEKAADKP"
     gene            1422..>2512
                     /locus_tag="VGD38_14765"
     CDS             1422..>2512
                     /locus_tag="VGD38_14765"
                     /inference="COORDINATES: protein motif:HMM:TIGR00148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HEY0729338.1"
                     /translation="MHPSLRTFLDRLTRENEIITIKAEVDPYLELAEIHRRVIDEGGP
                     ALLFERVKGSRYPVVTNMFGTERRIDLAFGPKPEAFVRDAVQTAESLLPPKPAELWKH
                     RSVGYDLLKLGTRNTTRAPVTQVIDKPSRLDQLPVLTTWQEDGGPFITLPLVYTENPI
                     TGKHNLGIYRVQIYDAGTAGLHWQIQKGGGFHYHEAEKMNAPLPVTIFLGGPPALILA
                     AIAPLPEDVPELVLASLLAGEKLKMAAIPIRGRHRLAAEAEFALVGYAPPHERRPEGP
                     FGDHYGYYSLRHDYPVFHCDAVIHRRDAIYPATVVGKPRQEDFFIGDYLQKLLSPLFP
                     LVMPSVRDLWSYGETGFHSLAAAVVRERYG"
BASE COUNT          540 a          718 c          753 g          501 t
ORIGIN      
        1 gataacgcga ttctcgtgat tggcggcgac atcgctgcga aagacggttt cgcgctcgcg
       61 actaagtact tcggcgactg gcaaaaacca accacgccgc tgccgtcggt cgacggcgcg
      121 acgaaagcga cggcgccgaa ggccgggcgt attgtcgtga tcgataaacc ggacgcggga
      181 caggccgcgg tttatctcgc gcgcacgggc atcaatcggc gcgatccgga ttactttcgc
      241 ggcatcgtta cgaattctgt gttgagtggt tattcagggc gactgaatca ggagattcgc
      301 atcaagcgcg ggttgagtta cggcgcgggc agccagttgg acacgcgccg tgatgttggt
      361 ccattcgtcg cttcggcgca aacgaagaac gagtcgggcg cgcaggtcgc cgatttgttg
      421 ttgggtgaga ttggccgttt gtcgagtgcg ccgccggctg acgtcgagct cacgccgcgc
      481 aaggccgttt tgatcggagg cttttcgcgc aacctcgaaa ccgtgaacgg gcttgtaagc
      541 caactggcgt cattggcgct gtacggtttg agtctggacg agatcaatcg ctacatcaat
      601 aatgtgcagt cgatcacgac cgcggacgtg cagaagtttg ctggtacgcg gctggatgca
      661 aagacgagta atatcatcat cgttgggaac gcaaagttgt ttctccccga gctgcaaaag
      721 aagtatccga acgtggaagt gattcccatg acggagctcg atctaaacac tgctctcctg
      781 cgaaagaagc aacagccatg aaatcggttt tatcgattct tataattctt ctcccgctcg
      841 gattcgctag cgctacctac gctcaaacag cggacatcga cggcgtcgac gcgcgctcga
      901 accccgccga gttcgcaaaa ggcctgagca gtctcgacgc gaacgtccgc cgccgcagcg
      961 ccgaagcact cgcccgcctc gccgcaaccg atcagcgcaa actcgtcgaa ggctaccact
     1021 tccaggagaa gaacaaggaa gtccgtctcg ccctcgactg ggcgctctat cgcatgggcc
     1081 gcgcagaagc gttgtatcgc gtcgtggacg atctcgactc cggccgccag gaccaggcga
     1141 tcggttactt gtcagagttg gaaagccccg atctgcttta tccgttcctg aagaaaacaa
     1201 acaacccgcc acgcgtgaac gccggcctgc tcaaagcact cgcgcgcatc ggcgacgctc
     1261 aatcactcga tctgatcaaa acgtttcgcg aatcgcacca gccgtacgta gccgaagcag
     1321 ccgagatcgc tcacgacgag atcgagaagc gcctggccga accggcggcg gcgacgcgcg
     1381 cccgtccacg aacagtcgaa aaggcggcgg acaaacccta gatgcatccg agcctgcgca
     1441 catttctaga tcgactaacc agagaaaacg aaatcatcac cattaaagcc gaggtcgatc
     1501 cgtatctcga gctggcggag atccatcgcc gtgtgatcga tgagggcggg cccgcgttgt
     1561 tgttcgaacg cgtgaaggga agccgctatc cggtggtgac gaacatgttt ggcaccgagc
     1621 ggcgcatcga tctcgcgttt ggtccaaagc cggaagcgtt tgtgcgcgat gcggtccaaa
     1681 ccgcggagtc gctgttgccg ccaaagcctg ctgaactttg gaagcaccgt tcggttggct
     1741 acgatcttct aaaactcggg actcgaaaca cgactcgcgc gccggtgaca caagtgatcg
     1801 acaagccctc gcgactcgat cagttgccgg tgctcacgac gtggcaagag gatggtggac
     1861 cattcatcac gctgccgctc gtctacaccg agaacccgat cacgggaaag cacaatctcg
     1921 gaatctatcg cgtgcagatc tacgacgccg gcacggccgg attgcattgg cagattcaaa
     1981 agggcggcgg gtttcattac cacgaagcgg agaagatgaa tgcgccgttg ccggtgacga
     2041 tttttcttgg tggaccaccg gcgctcattc tcgccgcgat cgcgccgttg cccgaagacg
     2101 tgccggagtt ggtattggcg tcgcttttgg caggcgaaaa attaaagatg gccgcgatcc
     2161 ccatccgtgg ccggcaccgt ctcgctgccg aagctgagtt tgcgttggtt ggttatgcac
     2221 caccccacga aagaagaccg gaaggaccgt ttggcgatca ctacggttac tactcgcttc
     2281 gtcacgacta tccggtgttt cactgcgacg ctgtgattca tcgccgcgac gcgatctatc
     2341 cggcgacagt ggtgggcaag ccgcggcagg aagatttttt catcggcgat tacttgcaga
     2401 agttgttgtc gccgttgttt ccgctagtga tgccgtcggt acgggattta tggagctatg
     2461 gcgaaacggg atttcactcg ttggcggcag cggtggtgcg cgagcgctac gg
//
LOCUS       DASWTX010000972         4231 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_318690, whole genome shotgun sequence.
ACCESSION   DASWTX010000972 DASWTX010000000
VERSION     DASWTX010000972.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4231
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318690"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..485)
                     /locus_tag="VGD38_14770"
     CDS             complement(<1..485)
                     /locus_tag="VGD38_14770"
                     /inference="COORDINATES: protein motif:HMM:NF024912.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729339.1"
                     /translation="MCSISGVLQTELTVDAVQTVRGMNATLRHRGPDDSGVWSVDTPD
                     GRVTLGNTRLAIIDTSSAGHQPMLDPKTGNCITYNGETYNFKSLCESIGLNPRSQSDT
                     EVVLHAYRTLGTDLFPRLRGMFALAMWDAQERELVLARDRFGIKPLYYHVSKNLFLFA
                     S"
     gene            complement(533..1606)
                     /locus_tag="VGD38_14775"
     CDS             complement(533..1606)
                     /locus_tag="VGD38_14775"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY0729340.1"
                     /translation="MKAFVLTDIPSPYQVELFNEIAAQKKLDLSVAYVRRADPSRLWQ
                     PAQAQFDSCSIDDAFAQATQLAAKADVAVFNYYNNHLAERLIRARAATGKPWCFWGER
                     PGLRQPRFAGRLFRRWKLKMLRRSRAPIWGVGEFALQQYKHEFGRDRSYKNVPYFSDL
                     DRFARGSVGRDRGSVRRVFLFCGSLSWRKGVDLVARAFVRLAREVTDVSLRIVGDGEL
                     RESLRRTLRTVDERVEFTGFVPWEQLPVVYADADVLCVPSRYDGWGLVVPEGLASALP
                     VIASDRMGAALDLIKGGVNGWLTQAGDEDAVFAAMREAAMLSNEQLAEFSIAARETIE
                     NHSLQRGAQRFAAYACEAVESWN"
     gene            complement(1603..2994)
                     /locus_tag="VGD38_14780"
     CDS             complement(1603..2994)
                     /locus_tag="VGD38_14780"
                     /inference="COORDINATES: protein motif:HMM:TIGR04370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008755 - O antigen polymerase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen polymerase"
                     /protein_id="HEY0729341.1"
                     /translation="MPAAAQGIVLRYPGIGIAAVTVATVAAVNLIPEHPEPEGALFWP
                     ALVLTLGLLIAPAAAAFRQPKALLRAEHLLVMAPIYWLLLDLLQGAYSMAGISVSEIE
                     YAFIAIGVFVACLWLGSMGRPWRVPSFIRDSVADDLQPTVYFYLVIVSFLLGIAKFAV
                     ATDFNLIAMFRSLGSGRWDAPWARGQLGGWDSFLDHLQYFGYLTSVLTVVVGRRMGWR
                     NWRTIVSAVLSLVMAMFLVQSGSRRVIGVVVGVALIFWILVQDSKLKVKHALAAMATM
                     VALLLAMQVMLQYRNVGLTAALSDPAIAAEDTPANEFLHVDDNFYRLCQVIQLIPSTH
                     PYVYHGFLVYALVRPIPRVIWPDKPVDAGFDLTRAVGDREVSYSCSVIGELYMSLGFF
                     GIAIGGWLYGRFAALINGLLTQSAGLGVVVIYSIGVMALFSGMRSLLELVLVSYVIIA
                     WVVLARLFRTQVQ"
     gene            complement(3000..>4231)
                     /locus_tag="VGD38_14785"
     CDS             complement(3000..>4231)
                     /locus_tag="VGD38_14785"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY0729342.1"
                     /translation="LVARLATSVMNSSKYVCAFRGRRDYYQAPLALAEAELLDSFITD
                     VYAGGTVRALSKTLPARLREKVLQRRRSGIPDNHVRCLWTSTLFERANFRLGKPESLI
                     FARYDAEYSKVAAAHARKNRSNLFLYSPYAWEAFTAQYCHTPHKVLFQFHPHPDLESR
                     ILNEDKARFPFVRESHTEESGERLNDQLRQRNRDAWKHADLVFCASSFTRRSLLEAGA
                     PETKCRVVPYGIDVPNIKIEAPDTFNALFVGAGSQRKGLHHLLLAWKQARLPKNSKLT
                     LVCRTIDSGILPLASKTPNVELIRGLTQTDLVQQFRQSSLFVMPSLVEGFGQVYLEAL
                     AEGCPVLGTSNTGLPDIGGEAVNIIDAGDIDQLTSQLESLSRELPGNTRIREAAQQSA
                     AGFSWLRFRQNLIAALV"
BASE COUNT          979 a         1335 c         1146 g          771 t
ORIGIN      
        1 tctgaggcaa aaaggaagag atttttggaa acgtgatagt agaggggctt aattccgaag
       61 cgatctcgcg cgaggaccaa ctcacgttct tgagcatccc acatagctaa cgcaaacatg
      121 ccgcgcaacc tcggaaagag atcggtgccg agtgttctgt aagcgtgtag aacaacttcc
      181 gtgtccgact gagaacgggg atttaggccg atagattcgc agagggattt gaagttgtag
      241 gtctcgccgt tgtaggtgat gcagttgccg gttttgggat cgagcattgg ttggtgaccg
      301 gcggaagatg tgtcgatgat ggcgagacgc gtgttgccga gtgttacgcg accgtccgga
      361 gtatcaacgc tccacacgcc actgtcgtct ggtccacggt gccgcagcgt tgcattcatt
      421 ccccgaactg tttgaacagc gtcaaccgtc agctccgttt gtaacacacc gctaatactg
      481 cacatcgtgc aagctcagtt cagccttcga caactcgttc ggctctcaaa tttcagttcc
      541 aactctcaac cgcctcacaa gcgtaagccg caaaccgctg cgcgccgcgc tgcaaactgt
      601 ggttctcgat cgtctcgcgc gcggcgattg aaaactccgc gagttgctcg ttcgacagca
      661 tcgccgcttc acgcatcgcc gcgaacaccg cgtcttcatc acccgcttgc gtcaaccaac
      721 cattcacgcc gcccttgatc aaatcgagcg ccgcgcccat ccgatcggaa gcaatcacag
      781 gcaacgcgga cgcaagcccc tccggcacga ccaatcccca cccgtcatat cgcgacggca
      841 cacaaagcac atctgcatcc gcataaacca ccggcaactg ttcccacggc acaaacccgg
      901 tgaactcaac gcgctcgtca accgttcgca gcgtccgccg caacgactcc cgcaactccc
      961 catccccaac gatcctcaac gacacatccg taacctcacg cgccagccga acaaacgcac
     1021 gcgcaaccaa atcaacaccc ttgcgccaac tcaacgatcc gcaaaacaga aacacacgcc
     1081 gcaccgaccc ccgatccctt ccaacgctcc ccctggcgaa ccgatccaaa tccgaaaagt
     1141 acggaacatt tttgtagctc cgatcccgcc cgaactcgtg cttgtactgc tgcaacgcaa
     1201 actcgcccac gccccagatc ggcgcgcgcg atctgcgcag catcttcaat ttccatcgcc
     1261 gaaacaagcg ccccgcaaac ctcggctgcc gcaatcccgg ccgctcgccc caaaaacacc
     1321 acggcttccc tgtcgccgcg cgcgcccgaa tcaatctctc agccaaatga ttgttgtagt
     1381 aattgaacac ggcaacatct gccttcgcgg cgagttgcgt cgcctgcgcg aaagcatcgt
     1441 cgatgctgca cgaatcaaac tgcgcctgcg ccggttgcca caagcgtgag ggatcggctc
     1501 gacgcacata cgccactgat agatcgagtt tcttttgcgc ggcgatctcg ttgaagagct
     1561 caacctgata cggcgacgga atgtctgtca gaacgaatgc cttcactgaa cctgcgtgcg
     1621 aaacaaacgc gccagcacca cccacgcgat gatgacgtaa ctcaccagca ccagttcgag
     1681 cagcgagcgc attcccgaaa acaacgccat cacgccgatg ctgtaaatca cgaccacgcc
     1741 caatcccgcc gactgcgtca acaggccatt gatcagcgcg gcgaaacggc catacaacca
     1801 gccgccaatc gcgatgccga aaaacccgag cgacatgtaa agctcgccga tcaccgaaca
     1861 cgaatacgaa acttctcgat cgcccaccgc acgcgtcaga tcgaatccgg cgtcgaccgg
     1921 tttgtcaggc caaatcacgc gcgggatcgg ccgcaccaac gcatacacaa gaaacccgtg
     1981 atacacgtaa ggatgcgtgc tcggtatcaa ctgaatgacc tggcaaaggc gataaaaatt
     2041 atcgtcgacg tgcaggaact cgtttgcggg cgtgtcttcc gcggcgatag ccggatcgct
     2101 gagcgcggca gtcagtccga cgttgcgata ctgaagcatc acctgcatcg ccagcagcag
     2161 cgcaaccatc gtcgccatcg ccgcgagcgc gtgtttgacc ttgagcttgc tatcctggac
     2221 caggatccaa aagatcaacg ccacgccaac cacgacgcca atcacgcggc ggctgccgct
     2281 ttggaccagg aacatcgcca tcaccagcga cagcaccgca ctcacaatcg tgcgccagtt
     2341 tcgccaaccc atgcgacggc ccacgaccac ggtcaaaacc gaagtgaggt aaccgaagta
     2401 ctgaaggtga tcgagaaatg agtcccagcc gccgagttgt ccacgcgccc acggcgcgtc
     2461 ccaacgcccg ctgccgagcg atcgaaacat cgcgatcagg ttgaagtccg tcgcgacggc
     2521 aaacttcgcg atgccgagca gaaacgagac gatgacgaga tagaagtaga ccgttggttg
     2581 taggtcgtcc gcaacggagt ctcggatgaa cgacggcacg cgccaggggc gtcccatcga
     2641 tccgagccac agacacgcga cgaaaactcc gatcgcgatg aatgcgtatt cgatctcgct
     2701 cacggagatg ccggccatcg aatacgcgcc ttgcagcagg tcgagtagca gccaatagat
     2761 gggcgccatc acgagcaggt gttcggcacg caacagcgct ttgggttgtc ggaacgcggc
     2821 agcggcgggc gcgatgagca ggccgagcgt caagacgagt gcgggccaga agagcgcgcc
     2881 ttcgggctcg gggtgttccg ggatgaggtt gacggcagca acggtcgcga cggtgacggc
     2941 ggcgatgcca attcccggat agcgcaggac gattccctgc gccgctgcag gcacggaatc
     3001 tacaccaacg ccgcgattaa gttttgacga aagcgcaacc atgaaaaacc agcggcactt
     3061 tgttgggccg cctctctgat cctcgtgttt ccaggcaact cacggctcag cgattcgagc
     3121 tgcgacgtga gctgatcgat atcaccggcg tcgatgatgt ttaccgcttc tccgccgatg
     3181 tcgggcaggc cggtgttact cgttcccagc accggacagc cttctgcgag cgcctcgaga
     3241 tacacctgac caaagccctc gactagcgat ggcatcacaa acagcgagct ctggcgaaac
     3301 tgttggacca gatctgtttg ggttagacca cgaatcaact cgacgttcgg ggttttcgaa
     3361 gctagtggca ggatgccgct gtcgatcgtg cggcaaacaa gagtcagctt gctatttttg
     3421 ggcaggcgcg cttgcttcca cgcgagcagc agatgatgaa gcccctttcg ctgactgccg
     3481 gcgcccacga acaaggcgtt gaaagtgtcc ggcgcttcga tcttgatgtt cggcacgtcg
     3541 atgccgtaag gcactacgcg acacttcgtt tccggcgcgc ctgcttcgag aagagatcgg
     3601 cgcgtgaaac tgctggcaca gaaaacgaga tcggcgtgtt tccacgcgtc gcgattacgt
     3661 tgccggagtt gatcgttgag ccgttcgcct gactcttccg tgtgcgactc acgcacaaat
     3721 ggaaaccgcg ctttgtcctc gttgagtatt cgcgactcga ggtcgggatg cggatgaaac
     3781 tgaaagagca ccttgtgtgg cgtgtggcaa tactgcgcgg tgaacgcttc ccacgcgtaa
     3841 ggactgtaga gaaaaaggtt tgaacggttc tttcgcgcgt gcgccgcggc gacctttgaa
     3901 tactcggcgt cgtaacgcgc gaagatcaac gattcgggtt tgcctaaacg gaagtttgcg
     3961 cgttcgaaga gcgtagacgt ccaaaggcag cgcacgtggt tgtcgggaat gccgctccgt
     4021 cgtcgctgca ggaccttttc gcgtaatcgc gcgggcaaag ttttcgacag cgcgcgcacc
     4081 gttccccccg cgtagacatc cgtaataaac gaatcgagca actccgcctc cgcgagcgct
     4141 agcggcgcct ggtagtaatc gcgccgcccc ctgaatgcac agacgtactt ggagctattc
     4201 attacggaag tcgcgagacg agccaccagt t
//
LOCUS       DASWTX010000973         3094 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_366529, whole genome shotgun sequence.
ACCESSION   DASWTX010000973 DASWTX010000000
VERSION     DASWTX010000973.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3094
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_366529"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..222)
                     /locus_tag="VGD38_14790"
     CDS             complement(<1..222)
                     /locus_tag="VGD38_14790"
                     /inference="COORDINATES: protein motif:HMM:NF017206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY0729343.1"
                     /translation="MSLTGTVVVTGGAGFIGSHIASALGAGGARVRVLDDLSTGHREN
                     LDEIGGDIDFIQGSVADESVLKKALEGAEL"
     gene            complement(226..1524)
                     /locus_tag="VGD38_14795"
     CDS             complement(226..1524)
                     /locus_tag="VGD38_14795"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose/GDP-mannose dehydrogenase family
                     protein"
                     /protein_id="HEY0729344.1"
                     /translation="MHIAVIGTGYVGLVTGACFAEFGVDVTCVDVDQEKIERLLDGVM
                     PIYEPGLEHLVAKNTQAGRLHFTTDVRQAVEQALVIFLAVGTPPKPDGSPDLSYVEAA
                     ACSIADYMNGYKVVVTKSTVPIGTGEHIRKLIAERKKTKATFGVVSNPEFLREGAAIN
                     DFMRPDRVVIGSRDEEAVAIMKDLYRPLYLIEAPFVITSLEAAELTKYAANAFLATKV
                     SFINEIANLCDKIGCDVHDVARAIGMDKRIGSKFLHPGPGFGGSCFPKDTRALASVAR
                     QYECASLIVDAVIEVNQRQGQHVLTKIRKLVGELKGKTIAVLGLAFKPETDDMREAPA
                     VGIIHSLVEDGAKVRAYDPVAMTEAKKILSEIEYADDEYAAVTGADALVFVTEWNQFR
                     ALDLKRICNLMTTPKVADLRNIYDPDDMKELGFEYVGVGR"
     gene            complement(1683..2375)
                     /locus_tag="VGD38_14800"
     CDS             complement(1683..2375)
                     /locus_tag="VGD38_14800"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HEY0729345.1"
                     /translation="MISKTWSRKSLATAVAVAVLSAYSMVVLAAPGAKASGELSVSGQ
                     VTVNGQKVISGGTVFSDSTISTAAQSNASVNISKVGRVELAPNSNLRLSFSDNSITAM
                     LETGSAQVSTLAGTTVNLTTKDGTVLVDGTQATTFTVSAFRGRTSVATQTGVAEFRSG
                     STTKHIAAGESATAGVPNPQTDDDDDDMSGGALAVLLLAIGGAVAGVLYAAFHNNDLN
                     FGGDVTVVSPTK"
     gene            complement(2665..>3094)
                     /locus_tag="VGD38_14805"
     CDS             complement(2665..>3094)
                     /locus_tag="VGD38_14805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729346.1"
                     /translation="DQEFGPVVRAYLGYLRNEQEVVDDRVSRREVSASYYRHNSNRIK
                     ALRQMAIRLARETDNDYLPELEAVSAGELGLLFGPRPPAPSSLKPGEVVRNTFRFLGT
                     VRSGGVFYLFARLDPYEQAELGEKELSTKTAGGRSEKNQK"
BASE COUNT          676 a          945 c          809 g          664 t
ORIGIN      
        1 gagctcagcg ccttcaagcg ccttcttcaa aacgctttca tccgcgacgc tgccttgaat
       61 gaaatctata tcgccgccga tctcgtcgag gttctcgcga tgacccgtcg agagatcgtc
      121 aagcactctg acgcgcgcgc cgccggcgcc cagcgcagac gcgatatgcg aacctataaa
      181 acctgctcca cctgtgacaa ctacagttcc cgttagtgac atcgtttacc ggcctacacc
      241 cacgtactca aaaccaagct ccttcatatc gtccggatcg taaatgttgc gcaagtccgc
      301 gactttcggc gtcgtcatca agttgcaaat gcgcttcaga tcgagcgcac gaaactggtt
      361 ccactccgtc acgaacacga gcgcgtcagc gccggtcacc gctgcatatt catcgtcggc
      421 gtactcgatc tccgaaagga tcttcttcgc ctcggtcatc gccaccggat cgtacgcgcg
      481 caccttcgca ccgtcttcaa ccaggctgtg aatgattccg acggccggag cctcgcgcat
      541 gtcgtcggtc tcgggtttga acgcgagccc aagcaccgcg atcgtcttgc ctttcaactc
      601 gccgaccagc ttgcggatct tcgtgagcac gtgttggccc tgacgctggt tcacttcgat
      661 cactgcgtcg acgatcaacg aagcgcattc atactgacgc gcgaccgacg ccaacgccct
      721 cgtgtccttc gggaaacacg aaccgccaaa acccggtccc ggatgcagaa acttgctgcc
      781 gatccgcttg tccatgccaa tcgcacgcgc cacgtcgtgt acgtcgcaac cgatcttgtc
      841 gcacaggttc gcgatctcgt tgatgaacga gactttggtg gcgagaaaag cgttagcggc
      901 atacttggtc aactcggcgg cttccaaaga cgtgatcaca aacggcgctt cgatcaggta
      961 aagcgggcga tacagatcct tcatgatcgc aacagcttct tcatcgcgac tgccgatcac
     1021 cacgcggtcc ggacgcatga agtcgttaat cgccgcgccc tcgcgcagaa actccggatt
     1081 cgaaaccaca ccaaacgtcg ccttggtctt ctttcgttcg gcgatgagct ttcgaatgtg
     1141 ttcgccggtg ccgatcggca cggtcgactt cgttacgacg accttgtaac cattcatgta
     1201 atccgcgatg gagcacgcag cagcctcaac ataactgaga tccggcgaac catcgggctt
     1261 tggtggagtg ccaacggcaa gaaagatgac cagcgcctgt tcgacagcct ggcgcacgtc
     1321 agtggtgaaa tgtaaacgtc cggcttgggt gttcttggcg accaggtgtt cgaggcctgg
     1381 ttcgtagatg ggcatgacgc cgtcgagcag ccgctcgatc ttttcctggt ccacgtcgac
     1441 gcaggtaacg tcgacaccaa actcagcgaa acatgctcca gtaacaagtc ctacataacc
     1501 agtaccaata acagcaatat gcatctaggc aactttccta acaaagagag gattcagggc
     1561 tctacaaaat cttgcgggcc acgcgcagta gtcgcgtgac ccgcaaggtc aattcaagtg
     1621 accgcagcgc tggtaaccag tgccacagtg ttttttctgc tcaaccggac gacttgcgaa
     1681 atttacttgg tcgggctgac tacggtaacg tcgccgccga agttcaaatc gttgttgtgg
     1741 aatgcggcgt aaagcacacc cgccacagcg ccaccgatag ccaggagcaa cacggccaac
     1801 gcgccgccgc tcatgtcgtc gtcatcgtca tcggtctgcg gattcggaac accagcagtt
     1861 gcactctcgc cagcggcgat atgcttcgtg gtgctgccac tgcggaactc ggcaacgccc
     1921 gtctgagtcg caactgacgt gcggccgcgg aacgcgctca cggtaaaggt agtcgcttgc
     1981 gtgccgtcga ccagaaccgt gccgtcttta gtggtcaaat taaccgtggt cccggccagt
     2041 gtggatacct gggcactgcc ggtttcgagc atcgcagtga tgctgttgtc cgaaaagcta
     2101 aggcgaagat tgctgttcgg agcgagctca acacgtccga ccttgctaat gttcaccgat
     2161 gcgttgcttt gagccgcggt gctgatcgtc gaatccgaga acaccgtgcc gccagaaatt
     2221 accttttggc cgttcaccgt aacctgccct gacaccgaca gctcgcctga cgctttggcg
     2281 cccggtgcgg ccaacaccac cattgagtaa gcactcaaaa cggctaccgc cacagcagtc
     2341 gcaagggact tgcggctcca agttttgcta atcatcaact ttcctcccgt aatgtgaaac
     2401 acaaaggtct ttattgcgta ccgcgacggc ctaacagtcg tgggaaacta tagtctgtgg
     2461 atgcacaaac ctgcaaagct cttaattgcc agaaattacg cgttgaaaag ctactaacgc
     2521 ttgggattta ttacactaat aaaagccctg tgtcaacaat catttgcact gagtttgcca
     2581 caaaactgtg tcaacgccgg gggacgtttt gcggcccaaa gtctaccata ggtcctggac
     2641 cagatagcca agtttttctt cgtcttactt ctgatttttc tcggaccgcc cgcccgcggt
     2701 cttggtcgag agctcttttt cgcccagttc ggcctgttcg tacggatcga gccgcgcaaa
     2761 cagataaaac accccgccgg accgcacggt cccgaggaac ctgaacgtgt tccgaactac
     2821 ctcaccgggc ttcagactcg acggcgccgg tggccgtggc ccaaaaagca ggcccaattc
     2881 gccggcggag acggcttcca gctccggaag gtagtcgttg tcggtctcgc gggcgaggcg
     2941 aatcgccatc tggcgcaaag cttttatgcg gttggaattg tggcggtaat aggacgcact
     3001 tacctcgcgc cggctcacgc gatcgtcgac cacttcctgc tcgtttcgga gatatccgag
     3061 gtaagctcga acgaccggac caaattcctg gtcg
//
LOCUS       DASWTX010000974         4369 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_11657, whole genome shotgun sequence.
ACCESSION   DASWTX010000974 DASWTX010000000
VERSION     DASWTX010000974.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4369)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4369)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4369
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11657"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..386
                     /locus_tag="VGD38_14810"
     CDS             <1..386
                     /locus_tag="VGD38_14810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729347.1"
                     /translation="FAEAYVRGDVQSYETSWRKDFGAELRRAAQMRRRFYGNFLGAPF
                     TERMIEFAKGHRGVKRVLGDLVAGEQGYVDLKKKLLKSALRPVVLALFALTLFLLGHS
                     PASAQKAKQPKDVIDAYRVITARGV"
     gene            complement(367..972)
                     /gene="pdxH"
                     /locus_tag="VGD38_14815"
     CDS             complement(367..972)
                     /gene="pdxH"
                     /locus_tag="VGD38_14815"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: protein motif:HMM:NF004231.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HEY0729348.1"
                     /translation="MEGLDENRIERDPIKQFQVWFDDAITAKLPMPDAMSLATVTPDG
                     RPTARMVLLKQVDAEGFVFFTNYQSSKARQLEINPYAALVFYWPQLERQVRVEGKTAK
                     TTAEESAAYFKTRPRESQLGAWASPQSEVISAREILEQRAHELAEQYCDREIDCPAHW
                     GGFRLKPDRIEFWKGRVGRLHDRILYELQPDETWTIKRLAP"
     gene            complement(972..1403)
                     /locus_tag="VGD38_14820"
     CDS             complement(972..1403)
                     /locus_tag="VGD38_14820"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF024675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HEY0729349.1"
                     /translation="MTSHKKFTIEERVRWGDVDAARIIFYGAYIHFFEFAETELFREV
                     GLAYGEMFDELKIWLPRVHLECDFRRAARLDDLLEVSVYVGRFGTKSMKLNFEVRRKG
                     EEELIATAHFVLAAVKQDAFETVPIPAELRERLAPYTANEE"
     gene            complement(1404..2198)
                     /locus_tag="VGD38_14825"
     CDS             complement(1404..2198)
                     /locus_tag="VGD38_14825"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY0729350.1"
                     /translation="MSFIRVDDIQLAYTDAGLGQPVVLLHGYPFNRTLWNEQVGALSN
                     SYRVITPDLRGHGESDASAGAATMNRMAQDVAALMDHLEISRAVIGGLSMGGYVALAF
                     YKQFPSRVRALILADTRAQADTEEGKQTRYQQAEKALAEGMAGIADAMLPKLLTPDTV
                     SKHPEVVKRVRDMMLKTKPEGAAGALLGMAERDDQTSLLSQISCPTLILVGREDPITP
                     VQDSEKMHREIEGSRLVVIENASHVSNLEQTEQFNDELLRFLNQLS"
     gene            complement(2202..>4369)
                     /locus_tag="VGD38_14830"
     CDS             complement(2202..>4369)
                     /locus_tag="VGD38_14830"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0729351.1"
                     /translation="FLIYAPVYRNGAPLDSIDDRRRALLGYVYSPYFIDEFLGPITSE
                     KNYDVSFQVYDGADVNEQSFLYGTHDAASPSDRRFTEKGSLDVAGRPWTLRYAEKPSF
                     ERGSSRPLLKYTLIVGALLSFLFFAITRAEVRARSRAEESAEEVRESEKAINEANERA
                     LSEYERLLERIASLSQALGTARELNTIFHGLREFTRVSVPCNGFFVSLYDPVRDVRTA
                     CYGWGDGEEVDVSQLPPMPVTESGPNSRAVRTGEVVITNDYMRATSANLSVIVGEDNG
                     LRPESSLAVPMAVMGRIIGTIEVQSYQKQAYRHEHVTAMTMAANLTAVAIENIRLLKL
                     ERTAREAAEESNRLKDEFLATVSHELRTPLTAILGWARMLEEGSLDGALARQAIDTIW
                     RNARAQAQIVDDILDVSRIITGNLYIDLHPIEVVPVVQNAINVVRPTADAKGIRIETD
                     IDNTPPAMISGDANRLQQVIWNLLSNAVKFTNSGGRVTLKVTQANAAVEISVTDTGQG
                     ISREFMPYVFDRFSQADSTTTRHHGGLGLGLAIARHLVEIHGGTIRAASRGEGQGATF
                     TITLPLLDSTVKTIEPATDKSIAYASQMLSGVNVLLVDDDSDTLKLMATALTRRQANV
                     TAVSSAGEAIQAIRQKRPDVLVSDIAMPGEDGYGLIEKVRSLDNEAAQSIPAVALTAY
                     AKEEDRERALSSGFQIYLAKPIELRELVSVVARAARRDF"
BASE COUNT          923 a         1403 c         1120 g          923 t
ORIGIN      
        1 tatttgccga ggcttatgtg cgcggcgatg tgcagagtta tgaaacaagt tggcgcaaag
       61 acttcggcgc ggaattacga cgcgccgccc agatgcgccg ccgtttctat ggaaacttcc
      121 tcggcgcgcc attcaccgag cgcatgatcg agtttgcgaa aggccatcgc ggagttaagc
      181 gtgtcttggg agacttggtg gcaggcgaac aaggctacgt cgacttgaag aagaagctgc
      241 tcaagagcgc gctgcgaccc gtggtgctcg ccctctttgc tctcaccctc tttctgctcg
      301 gacactcgcc ggcctcagcg caaaaggcga aacagccgaa ggacgtcatt gacgcgtatc
      361 gcgtcatcac ggcgcgaggc gtttgatggt ccaggtttcg tcaggctgga gctcgtagag
      421 aatccgatcg tgcagacggc cgacccggcc tttccaaaac tcaatccgat ccggttttaa
      481 tcgaaagccg ccccagtgtg cgggacaatc tatttcacga tcgcagtatt gctcggctaa
      541 ctcgtgcgcg cgctgctcga gaatttcgcg cgccgagatc acttcgcttt gcggcgaggc
      601 ccacgcgccg agctggctct cgcgtggccg agttttgaaa taagctgcgg actcttcagc
      661 cgttgtcttc gcggtcttac cttcgacgcg cacctgccgt tcgagttgtg gccaataaaa
      721 cacgagcgcc gcgtacggat tgatctcgag ttgccgcgct ttcgagcttt ggtagttggt
      781 gaagaaaaca aaaccttcgg cgtctacctg tttcaacaaa accatgcgcg cggtcggacg
      841 tccatcgggc gtgacggtcg cgaggctcat cgcgtccggc atcggcagct tcgccgtgat
      901 cgcgtcgtca aaccagacct gaaattgttt gatcggatcg cgttcgatcc ggttctcgtc
      961 taagccttcc atcactcctc gtttgccgtg tagggtgcga gccgttcgcg caactcagcc
     1021 ggaatcggca cggtttcaaa tgcatcctgc ttgaccgcgg ccaggacgaa atgcgccgtt
     1081 gcgatcaact cttcctcgcc tttgcgccgc acttcaaaat tgagcttcat cgacttcgtg
     1141 ccgaagcgtc caacataaac actgacttcc aacaaatcgt ccaaccgcgc cgcgcgacga
     1201 aagtcacact cgagatgcac gcgcggcaac cagatcttca actcatcaaa catctcgccg
     1261 taagcaagac cgacttcgcg gaacagctcc gtctccgcaa actcgaagaa gtgaatgtaa
     1321 gcgccgtaaa aaataatgcg cgctgcgtcc acatcacccc agcgcacacg ctcttcaatc
     1381 gtaaacttct tgtgacttgt catttagctc aactgattca aaaaccgcag caactcgtcg
     1441 ttgaactgct ccgtctgctc gagattcgaa acgtgcgacg cattctcgat cactacgagg
     1501 cgcgaacctt cgatctcgcg atgcatcttc tcactatcct gcaccggcgt gatcggatcc
     1561 tcccgtccga ccagaatcaa cgtcggacac gagatctgcg acaacagcga cgtttgatcg
     1621 tcacgttccg ccattcccaa caacgcaccc gcggcgcctt ccggcttcgt cttcaacatc
     1681 atgtcgcgca cgcgcttcac gacctcggga tgcttgctca ccgtgtcagg cgtcaaaagc
     1741 ttcggcaaca tcgcatccgc gatccccgcc attccttcag ccagcgcttt ctccgcctgt
     1801 tgataacgcg tctgttttcc ttcttcggtg tcggcctgcg cgcgcgtgtc agcgagaatc
     1861 aacgcccgaa cacgcgacgg aaactgtttg tagaacgcga gcgcaacgta accacccatc
     1921 gacaacccac caataaccgc acgcgagatc tcgagatggt ccatcaacgc agccacgtcc
     1981 tgggccatgc gattcatcgt cgccgcgccc gccgaagcat cgctttcacc atgcccgcgc
     2041 aggtcaggcg tgatcacgcg ataactgtta ctcaacgccc cgacctgttc gttccacaac
     2101 gtccggttga acggataacc gtgcaacaac acgacaggct gtccgagccc cgcatccgtg
     2161 taggccaact gaatatcatc cactcgtata aacgacataa gttagaaatc tctgcgcgcc
     2221 gcgcgcgcaa ctaccgacac caactcccgc aactcgatcg gcttcgccag ataaatctga
     2281 aacccggacg acaacgcacg ttcacgatct tcctctttcg cgtaagccgt cagcgccacc
     2341 gccggaatac tctgcgctgc ctcattatcc agcgaacgca ccttttcaat cagaccgtaa
     2401 ccgtcctcgc ccggcatcgc gatgtcggaa acgagcacgt ccggccgttt ctgcctgatg
     2461 gcctgaattg cctctcctgc ggaagatacc gcagtgacgt tcgcttgtct cctggtcaac
     2521 gcggtcgcca tcagttttaa cgtgtcagaa tcgtcgtcca caagcaaaac gttaacgcca
     2581 gacaacatct gcgacgcata cgcaatactc ttgtccgttg ccggctcgat cgtcttcacc
     2641 gtcgaatcaa gcagcggcag cgtgatcgta aacgtcgcgc cctgaccttc accgcgactc
     2701 gccgcgcgaa tcgtgccgcc atgtatctca accaggtgac gcgcgatcgc caaaccgagc
     2761 cccagcccgc cgtgatgccg cgtcgtcgtg ctgtcagcct ggctaaaacg atcgaacacg
     2821 tacggcataa actcgcgcga aattccctgg cccgtatcag tcacactgat ctccaccgcc
     2881 gcattcgctt gcgttacttt caacgtcact cgcccgccgc tgttcgtaaa cttcaccgcg
     2941 ttcgacaaca ggttccagat cacttgctgc aaccggttgg cgtcaccgga gatcatcgcg
     3001 ggcggtgtgt tgtcgatgtc agtctcgatg cgtatgcctt tcgcgtcggc ggttggacgc
     3061 acgacgttga tcgcgttctg gaccaccggc acgacttcga tcgggtgcag atcgatgtac
     3121 aggtttccgg tgatgatgcg cgacacgtcg agtatgtcgt cgacgatctg cgcctgcgct
     3181 ctcgcgttgc gccagatcgt atcgatcgcc tgtcgggcga gtgcgccatc gagcgatccc
     3241 tcttcgagca tccgcgccca accgagtatc gcagtgagcg gcgtgcgcag ttcgtgcgaa
     3301 acagtcgcga gaaactcatc tttcagacgg ttcgattctt cagcagcttc gcgtgcggtg
     3361 cgttcgagtt tcagcagccg aatgttttcg atcgccaccg cagtcaagtt cgccgccatc
     3421 gtcattgccg tgacgtgttc gtgccggtac gcctgcttct gataactctg cacttcaatc
     3481 gtgccgatga tgcggcccat caccgccatc ggtaccgcga gcgacgactc cggacgcaga
     3541 ccattatcct cgccgacgat caccgagaga ttcgcactcg tcgcacgcat gtaatcgttc
     3601 gttataacga cttctccggt gcgcacggcg cgagagtttg gaccactctc cgtcaccggc
     3661 atcggcggca attgcgaaac gtctacttcc tcgccgtcgc cccagccgta acacgcagtg
     3721 cgaacatcgc gaaccggatc gtaaagcgaa acaaaaaagc cgttgcacgg aacagagact
     3781 ctcgtgaact cacgcagtcc atgaaagatc gtgttcaact cgcgcgccgt tcccaacgct
     3841 tgcgagagac tcgcaatgcg ttcgagcagc cgttcgtatt ccgacagcgc gcgttcgtta
     3901 gcttcgttga tcgccttttc cgactctctg acttcttctg ccgactcttc agcgcgcgaa
     3961 cgcgcacgca cctccgcgcg cgtgatcgca aaaaacagaa aactcagcaa cgcaccgacg
     4021 ataagcgtgt acttcaacaa cggacggctc gagccgcgct caaatgacgg tttctccgca
     4081 tagcgcaacg tccacgggcg acccgcaacg tcgagcgaac ccttttcggt aaaacgacga
     4141 tcgcttggcg acgcagcgtc gtgcgtgccg tacaaaaagc tctgttcgtt aacgtccgca
     4201 ccgtcgtaaa cctgaaaact cacgtcgtag tttttctccg acgtgattgg accaagaaac
     4261 tcgtcgatga agtaggggct gtaaacgtag ccgagcagcg ctcgtcgccg gtcgtctatc
     4321 gagtcgagcg gggcgccgtt tcgataaacc ggcgcataga tcagaaaag
//
LOCUS       DASWTX010000975         5029 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_168235, whole genome shotgun sequence.
ACCESSION   DASWTX010000975 DASWTX010000000
VERSION     DASWTX010000975.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5029
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168235"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1214)
                     /locus_tag="VGD38_14835"
     CDS             complement(<1..1214)
                     /locus_tag="VGD38_14835"
                     /inference="COORDINATES: protein motif:HMM:TIGR03975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RiPP maturation radical SAM C-methyltransferase"
                     /protein_id="HEY0729352.1"
                     /translation="MSAESIKPVALVSMPTLSARFPSFQLALLKPTLEREGIPVQTFS
                     MFMYFGTYAGWHITEALSDVYPCMVGEWIWTKAAFGDFANNEDYFELYRGNLESICKQ
                     AGCTVADLSEIRETKAPAFIDFCVNSVDWSRFGVIGFSVVFQQTLASIALARALKERY
                     PEIPIMMGGATFEDDIAEEIMKGCPQVDFIHCGDADETLPKTIHRLYSGESLAGMPGV
                     MWRDNDQIKYAGRAPNLSDMNKTPVPDFDEYFYARKEGGYARHDSAREVLLPIETARG
                     CWWGVKNHCTFCGLNRAGMEFRSKSVENVIEQLDQLAQRYGILDFNAIDNIIEPEYIN
                     KLFTKLADANSDLRLHYEVRPSLTRAQLKLMRQGGLFSIQPGVESLSTHILKLLRKHT
                     TGMRNLELIKWST"
     gene            complement(1276..1521)
                     /locus_tag="VGD38_14840"
     CDS             complement(1276..1521)
                     /locus_tag="VGD38_14840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729353.1"
                     /translation="MNDEYKKSYPEIQPEVAPEIRPEIRPEIQPEIAPEIRPEIQPEI
                     APEIQPEIAPERRPIPEVAPERAPRPIPEIAPDSPKR"
     gene            complement(1670..2266)
                     /locus_tag="VGD38_14845"
     CDS             complement(1670..2266)
                     /locus_tag="VGD38_14845"
                     /inference="COORDINATES: protein motif:HMM:NF025024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HEY0729354.1"
                     /translation="MPELTASQFNLFLLRNFLDAKTCHDLIEEMRSAPITQAPVYIAG
                     AEGVIHEDVRKTTSWHPSEETITTLQDLMFAQKSALEAHFGFALTDCERPQFLRYQPG
                     DFFVRHQDGNTETLEFDHLRIRKISLIVFLNDHAAEPKENCYSGGALSFYDNKEPAAD
                     SFPLMGETGLLVAFRADTYHEVLPVTCGDRLTIISWFR"
     gene            complement(2276..3955)
                     /locus_tag="VGD38_14850"
     CDS             complement(2276..3955)
                     /locus_tag="VGD38_14850"
                     /inference="COORDINATES: protein motif:HMM:NF014589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase C-terminal
                     domain-containing protein"
                     /protein_id="HEY0729355.1"
                     /translation="MDKQPWVLGISASHNGSVCLLRGDEIVVAIQEERLSRFKRHRIY
                     GSGPSLAAAYCLNYAGIDPSELDLVVLCVQGRLQDEKHDIYRDTFLNLRGNNTPVLTI
                     PHHYGHAVSVFATSGFAESAILIVDGAGSPVTDFTAAEKRILNGHSTDAWETISLYYA
                     SGIDVIPLEKHVVDRGAWLVPYDSEMPAFGSLGGMFSAAAQQIFGESSEAGKVMGLAA
                     YGKPEFPSSDFFEIERGRFCFKQTVPLRFRHERRWPDSAQEYEALAASVQAALETALL
                     YLVQHLRELCHSNNLGYAGGVALNSVANERIIRESGYENVYIIPAAEDSGAAIGAAYH
                     GLWHLTGHNSRTRLPHDALGRSYTAADLAEALRNRYNVTTVESTNVIADAVELLCDGK
                     IIGWFDGGSELGPRALGQRSILCDPRRPDGKEILNRRVKMREAFRPFAPAVTLAEAPN
                     WFEFGGTSPESPFMLRVCEVNPQRKDAVPAIVHADGTGRLQTLTPEANGRFHELVKRF
                     HERTGVPMLLNTSFNRMGQPIVETPTDAIECLLNTGLDCCVFEDRIVFKTG"
     gene            complement(3961..>5029)
                     /locus_tag="VGD38_14855"
     CDS             complement(3961..>5029)
                     /locus_tag="VGD38_14855"
                     /inference="COORDINATES: protein motif:HMM:NF018613.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0729356.1"
                     /translation="IRVVRAVEESHHLADKLVRLYNWILRNRQHWMKYYYWAINRVRP
                     DTRQFFHKRCVGYVRDLFERWCPHIVVSVHPLTQHIFGRVLKELNLADRVPLVSVVTD
                     PCYGFWKGWACDAVTLYLVASEDARRQLIDYGVSPERIKISGMPVHPKFAYPGEEAAQ
                     AARRALGLDPEKFTVFVNAGWIGGGNIPQIFRELVQGELDVQAIFLAGKNEDLRAVAE
                     SIATDAPFPVKVIGYSDEIEQLMSAANVMISKLGGLTTFEALACRVPIIADVITDPMP
                     QEAGTAKLIAQRGAGVMLNRASDVVNVVRRMMEDEVHYSRMRAATAGLALPNSTQYIV
                     EEIAALIPQPENAVLNEVASA"
BASE COUNT         1072 a         1441 c         1430 g         1086 t
ORIGIN      
        1 gtggaccact tgatgagctc gaggttgcgc atgccggtcg tgtgtttgcg caggagcttg
       61 agaatgtgag tcgaaagact ttccacgccc ggctggatgg aaaacagtcc gccctgccgc
      121 atcagcttga gttgcgcgcg cgtcaggctg ggccgcacct cgtagtgaag acgcagatcg
      181 ctgttggcat ctgctagttt cgtgaacagc ttattgatgt actcgggctc gatgatgtta
      241 tcgatggcgt tgaaatcaag gatgccgtaa cgctgcgcga gttgatcgag ttgctcgatc
      301 acgttctcga cgctcttcga tctgaattcc atgccggcgc gattcaaacc gcagaacgtg
      361 cagtggttct tcacgcccca ccaacagccg cgcgcggttt cgattggcag caacacttcc
      421 cgagcgctgt cgtgacgtgc gtacccgcct tccttgcgtg cataaaaata ctcgtcgaag
      481 tcgggcaccg gagtcttgtt catgtcgctc aggttcggag cgcgtccggc gtacttaatc
      541 tgatcgttat ctcgccacat gacacccggc atgcccgcga gcgattcccc gctgtacaaa
      601 cggtgaatcg tcttcggcag tgtttcgtcg gcgtcgccgc agtgaatgaa atcaacctgc
      661 ggacagcctt tcatgatctc ttcggcgatg tcgtcttcaa acgtcgcacc gcccatcatg
      721 atcggaatct cggggtagcg ttccttcaac gcgcgcgcca gcgcgatgct ggcgagcgtt
      781 tgttgaaaca cgaccgagaa accgatcacg ccgaaacggc tccagtcgac gctgttaaca
      841 caaaaatcga taaatgccgg cgccttcgtt tcgcgaatct ccgacaaatc ggccaccgtg
      901 catcccgctt gtttgcagat cgactcgaga ttgccgcgat aaagctcgaa gtaatcctcg
      961 ttgttcgcaa agtcgccaaa agctgccttg gtccaaatcc actcgccgac catgcacgga
     1021 tacacgtcgg acagcgcttc ggtgatgtgc caaccggcgt aggttccgaa gtacatgaac
     1081 atcgagaagg tttgaacggg gatgccttca cgctccagcg tgggcttcaa cagcgcgagc
     1141 tgaaacgaag gaaaccgcgc tgagagcgtg ggcatgctga cgagagcaac tggcttgatt
     1201 gactctgcgc tcatagacga ttacctcggc cagatttcga tctggtcctg gtcagattga
     1261 tctcgacacc ggtcgttagc gcttcggaga atcgggtgcg atttccggga tgggccgtgg
     1321 tgctctttcc ggcgccactt ccggaatggg tcttctctcc ggagcgattt caggctgaat
     1381 ttcgggtgcg atctccggtt gaatttctgg tcttatttcc ggggcgatct ccggctgaat
     1441 ctcgggcctt atttctggcc gtatttctgg tgcaacctcc ggctgaattt caggatagct
     1501 cttcttgtat tcgtcattca tggattttct cccaaggaac gtgagcgtta agagaattaa
     1561 gtgagaccaa caacgcgggg gtaagacgtt gcggcagaag gtttcgagtt acgagggaac
     1621 cggcgcagcg taatgcgaac tcacgctcgt gtcaacaaaa ataatggtcc tatctgaacc
     1681 aactgataat cgtcaaacga tcgccacacg taacgggcaa aacttcgtga taggtgtcgg
     1741 cccgaaaagc cacgagcagg cccgtctcgc ccatcaacgg gaacgaatca gcagcgggtt
     1801 ctttgttgtc ataaaaactg agcgcgccgc ccgagtagca gttttctttc ggctcggctg
     1861 cgtggtcgtt cagaaacacg atgagtgaga ttttgcggat gcgcaggtga tcgaattcga
     1921 gagtttcggt gttgccgtcc tggtgacgca cgaagaagtc gccgggttga tagcgcagga
     1981 attgcggccg ttcgcagtca gttaacgcaa atccaaaatg ggcctcgagg gccgatttct
     2041 gcgcgaacat gagatcctga agcgtcgtga tggtctcttc agaaggatgc caactcgtgg
     2101 tcttgcggac gtcttcgtga atcacacctt ccgcgcctgc gatgtagacc ggcgcctgcg
     2161 tgatcggagc tgagcgcatc tcttcgatga ggtcgtggca cgttttcgcg tcgagaaaat
     2221 ttctcagtag aaacaggttg aattgtgagg ctgttagttc cggcatcgta cttccctaac
     2281 cagttttgaa gacgattcta tcctcaaaca cgcaacaatc aaggccggtg ttgagcaaac
     2341 actcgatcgc gtcggtgggg gtttcgacga tcggctggcc catgcggttg aacgaagtgt
     2401 tgagaagcat cggaactccg gtgcgttcgt gaaagcgttt gaccaactca tggaaccggc
     2461 cgtttgcttc aggcgtcaac gtttgcaacc ggccggtgcc atcggcatgc acgatcgcgg
     2521 gcactgcgtc ttttcgttgt gggttcactt cgcaaacacg cagcatgaac gggctctcgg
     2581 gtgacgtgcc gccgaactca aaccagtttg gcgcttccgc gagagttacc gcgggagcaa
     2641 agggacgaaa cgcttcacgc atcttcacgc gccggttgag tatttccttg ccgtcgggac
     2701 ggcgcggatc gcagaggatg ctgcgttgac ccaaagcgcg tggaccgagt tcggagccgc
     2761 cgtcaaacca accgatgatc ttgccgtcac acaataactc aaccgcgtcg gcgataacgt
     2821 tcgtcgactc gaccgttgtt acgttgtatc tattgcggag agcttcagcg agatccgcgg
     2881 ctgtgtaact gcgtccgagc gcatcgtgag gcagacgcgt tcgcgaattg tgtccggtca
     2941 ggtgccagag accgtgataa gccgcaccga tggcggcgcc actgtcctca gccgccggaa
     3001 tgatgtagac gttttcataa cccgactcac gaatgatccg ctcgttcgcc acgctgttca
     3061 aagccacgcc gcccgcgtaa ccgagattgt tgctgtggca gagttcgcgg aggtgttgga
     3121 ccagatacag taacgcagtt tcgagcgccg cttgcactga cgcagcgagc gcttcgtatt
     3181 cctgtgcgct atccggccag cggcgttcgt gtcgaaaacg cagcggcacg gtttgcttga
     3241 aacaaaaacg cccgcgttcg atctcgaaga agtcactgct cggaaactcc ggcttgccgt
     3301 aagccgcgag gcccatcacc tttcccgctt cactcgattc gccgaagatc tgttgcgcgg
     3361 ccgcggaaaa cattcctccc aaactgccaa acgccggcat ttccgagtcg tacggcacga
     3421 gccacgcgcc gcgatcgacc acgtgtttct cgagcggaat cacatcgatg cccgaggcgt
     3481 agtaaagcga gatcgtttcc cacgcgtcag tggaatgacc gttgagaatg cgcttctccg
     3541 ctgcggtaaa gtcagtgacc ggcgagcccg cgccgtcgac gataagaatc gccgactccg
     3601 cgaagccgga agtcgcaaac acactcaccg catgtccata gtgatgagga atcgtgagta
     3661 ccggcgtgtt gttcccgcga agattcaaaa acgtgtcgcg atagatgtcg tgcttttcgt
     3721 cctgcaaacg gccctgcacg cacagcacaa cgaggtctaa ctccgaggga tcgatacccg
     3781 catagttgag acagtaggcc gcggctaacg atggaccaga gccgtaaatg cgatgccgtt
     3841 tgaatcgcga aagacgttct tcctggattg cgacgacgat ttcgtcgccg cgcagaagac
     3901 acactgaacc gttgtgcgag gcgctaattc cgaggaccca cggctgtttg tccactgagg
     3961 ttaggcagag gccacttcgt ttagtacagc attttcaggc tgcggaatga gcgcagcgat
     4021 ctcttcgacg atgtattgag ttgagtttgg caacgcgagg cccgcagtcg ccgcgcgcat
     4081 ccgcgaatag tgaacttcgt cttccatcat ccggcgcacg acgtttacca cgtcgctcgc
     4141 acgattcaac atcacgccgg cgccgcgttg cgcgatcaac ttcgcggtgc ccgcttcctg
     4201 cggcatcgga tcggtgatca cgtccgcgat gatgggcaca cggcacgcga gcgcttcgaa
     4261 cgtcgtcaat ccgccgagct tcgaaatcat cacgttcgcg gcgctcatca gttgctcgat
     4321 ctcgtctgaa taaccgatca ccttcaccgg aaacggcgcg tcagtcgcga tcgactcagc
     4381 caccgcgcgc aggtcttcgt tcttgccggc gaggaagatc gcctgcacgt cgagctcgcc
     4441 ctggacgagc tcgcggaaga tctgcggaat gttgccgccg ccgatccagc ccgcgttaac
     4501 aaagaccgtg aacttttccg ggtccaatcc gagcgcacgc cgcgcggcct gggcggcttc
     4561 ttcacccgga tacgcaaact tcggatggac cggcatccct gaaatcttga tccgttccgg
     4621 cgacacgccg taatcgatca actgtcgccg cgcatcttca ctcgcaacga gataaagcgt
     4681 gacggcgtcg caggcccatc ctttccaaaa cccgtaacac ggatcggtca cgacggatac
     4741 aagcggcacg cgatccgcaa gattcagttc cttgagcacg cggccaaaga tgtgctgcgt
     4801 caacggatgc acgctgacga cgatgtgcgg acaccaacgt tcgaacagat cacggacgta
     4861 accaacgcat cgcttgtgaa aaaactgccg cgtgtcagga cgaacgcgat tgatcgccca
     4921 gtagtaatac ttcatccagt gctggcggtt gcgcaggatc cagttgtaaa gacggaccag
     4981 cttgtcggca agatggtgcg actcctcgac agcgcgcacg acccgaatt
//
LOCUS       DASWTX010000976         3343 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_424303, whole genome shotgun sequence.
ACCESSION   DASWTX010000976 DASWTX010000000
VERSION     DASWTX010000976.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3343
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424303"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..736)
                     /locus_tag="VGD38_14860"
     CDS             complement(<1..736)
                     /locus_tag="VGD38_14860"
                     /inference="COORDINATES: protein motif:HMM:NF023391.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016851 - magnesium chelatase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3479 domain-containing protein"
                     /protein_id="HEY0729357.1"
                     /translation="MNITVLYVGSSLLAPLKNAERDINRAYDLDLRVGAHNFGSPLSD
                     SEWLEVERDLAEANVVFIIHVMDGENASRLIKALEARKHDAVIVINCMPELMRHTRMG
                     RLDISKLRSVSGLFGGKSKANKRKANHGKYLKIVDRLPQVLKFIPTTGALTDAKHYLY
                     LFCYFLQPTPANIQSMLLYSLKHYVRDARLKSVKLDAPQQVPSVAIYHPDASKLFESF
                     ESYQKWYRKPLDPQSTIGLLLMRPQVI"
     gene            complement(733..2346)
                     /locus_tag="VGD38_14865"
     CDS             complement(733..2346)
                     /locus_tag="VGD38_14865"
                     /EC_number="6.6.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF014563.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobaltochelatase subunit CobN"
                     /protein_id="HEY0729358.1"
                     /translation="MPEKPDTDRDARVFALYEQLLEMEQRLIPTGLHVFGRASSVGEQ
                     TDLFKMVASFDRPEHGIRALPAEVVDDVVRKFVSGEAQSQGLAEEIVRPVIALLESVR
                     QKLQTNTEIDSLVRALRGEFIEPGPGADIIQNPDVLPTGRNTHAINPYSVPSAVAFTR
                     SEFVATSLLERYRSENGRYPEAMALVLWGLDNIKTQGEGVAQALWLLGVRPVRDALNR
                     TTDVEPIALDKLGRPRIDVVMTVSGIFRDLFSPTVQLLDKAVRLVAQLDEPLELNYVR
                     KHVLEQIERDKSTSDEAAMRVFSNAPGNYGTNVNFMVMDSQWEREETLGDLFVTRKCF
                     AYGRDSQGRAIEGTEARVAMDRALSRVEATYQNIDTFEIGLTDVDHYFEYLGGVSKAV
                     EKRAKARPAIYLSDSLSREVKIRSLEETVRLETRTKTLNPKWYEGMLKHGFRGVAEIE
                     NHVSNTFGWSATADAVDDWIYTEVANTFLFDESMLERLRDLNPHSAHALAQRLLEANG
                     RGYWDADTEALAKLRDISRSLEDQLEGVA"
     gene            complement(2339..>3343)
                     /locus_tag="VGD38_14870"
     CDS             complement(2339..>3343)
                     /locus_tag="VGD38_14870"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0729359.1"
                     /translation="EEVLPQNSTAPQPHDQGDGDEDEPDEDSTPGGRDPIFNPPNPSP
                     SKSRNGARPNKKDGPSPPAVENRSRESRLEDQLQPKDRRKSNAKTRRSAGAKAAMQQL
                     RGRYMRSVEFKNNGARVAVDATMRAMVAQARGPLTPISANALRYKLLKDKQGTLFIFA
                     IDASGSMAANRIARAKSTILKLLRKSYLNRDSVAIVSFHGMTANLDLPPSRSILRARR
                     VLDSLRMGGSTPLGAGLVTTIELIKLVGDKFGETVVLLFTDGRSNVPLRRNGLNVRAM
                     RHLKIEAELRELNFALRKTRARVIVVDTQKEFESSEETRRLAEILQAQFVKLAPAIHA
                     "
BASE COUNT          703 a         1061 c          852 g          727 t
ORIGIN      
        1 tgatgacttg cgggcgcatc aacagcaggc cgatcgtcga ttgtggatcg agcggtttcc
       61 tgtaccactt ttgataagac tcgaatgatt cgaagagctt tgaagcgtcc gggtgataga
      121 tcgcgaccga cggcacctgc tgcggcgcat cgagctttac ggatttcaag cgagcgtcgc
      181 gaacgtagtg cttcagcgag taaagcagca tcgactgaat gttcgcgggt gtgggctgaa
      241 ggaagtaaca gaagaggtag agatagtgtt ttgcgtccgt gagcgcgccg gttgtgggga
      301 tgaatttgag tacctgtggc agtcgatcaa ctattttgag gtactttccg tggttggctt
      361 ttctcttatt ggcttttgat ttccctccaa acaggccgct caccgagcgc aactttgaaa
      421 tatcgaggcg gcccatgcgc gtgtgccgca tcaactccgg catgcagttg atcacgatca
      481 cagcgtcgtg tttacgcgct tctagtgctt tgatcagtcg cgacgcgttc tcgccatcca
      541 tcacgtgaat gatgaaaaca acattcgctt ccgccaagtc gcgctcaact tcaagccatt
      601 cactgtcgct gagcggcgaa ccgaagttat gagctccgac gcgcaggtcc aaatcgtaag
      661 cacgattgat gtcgcgctcc gcattcttca gcggcgccag caaactcgaa cccacataca
      721 aaacggtgat gttcatgcga cgccttccaa ctggtcttcc agactgcggc tgatgtcacg
      781 cagcttcgcg agcgcttccg tgtctgcgtc ccaataaccg cggccgttcg cttccaacaa
      841 acgctgcgcg agcgcgtgtg ccgagtgcgg gttcaggtcg cgcagccgtt cgagcatcga
      901 ttcgtcaaac aaaaacgtgt tcgcgacttc tgtgtagatc caatcgtcga cggcgtctgc
      961 ggtcgcgctc cagccaaacg tgttcgaaac gtggttctcg atctccgcga caccgcggaa
     1021 accgtgcttg agcattccct cgtaccactt cggattcagc gtcttcgttc gcgtctccag
     1081 ccgcaccgtc tcttcgagcg aacgaatctt cacttcgcgc gacaaactgt cagacagata
     1141 gatcgccggc cgcgccttcg cgcgtttctc aactgccttc gacacgccac cgagatattc
     1201 aaaatagtgg tccacgtccg tcagcccgat ctcaaacgtg tcgatgttct gatacgtcgc
     1261 ttcaacgcgc gacaaagcac ggtccatcgc cacgcgcgct tccgtgccct cgatcgcgcg
     1321 tccctgcgag tcgcgtccgt aggcaaaaca cttgcgcgtc acaaacagat cgccgagcgt
     1381 ctcttcgcgc tcccactgtg aatccatcac catgaaattc acattcgtgc cgtaattacc
     1441 cggcgcgttt gaaaacacac gcatagctgc ttcgtctgac gtagacttat cgcgctcgat
     1501 ctgttcgagc acatgcttgc gcacataatt caactccaac ggctcatcaa gctgggccac
     1561 caatcgaacc gctttgtcga gcaactgcac tgtcggacta aacaagtcgc gaaagatccc
     1621 cgacaccgtc atcacgacgt caatgcgcgg tcgtcccaac ttatccaaag caattggctc
     1681 tacatctgtg gtcctgttta aagcatcgcg caccggtcgc acgccgagca gccaaagcgc
     1741 ctgcgcgaca ccttcaccct gcgtcttgat gttgtccagg ccccacaata cgagcgccat
     1801 cgcttcgggg tagcgcccat tctcgctgcg gtaacgctct aacagactcg tggccacgaa
     1861 ctcactacgc gtaaacgcca ccgctgacgg cacagagtac ggattgatcg cgtgcgtgtt
     1921 tcggccggta ggcagaacat cgggattctg aataatatcc gcgcccggcc ccggctcaat
     1981 aaactcaccc cgcagcgccc gaacaagcga atcaatttcc gtattggttt gtaacttctg
     2041 acggacgctt tcgagcaaag cgataaccgg ccttactatc tcttccgcaa ggccctgact
     2101 ttgcgcctct ccagaaacaa actttcgcac aacatcatcc acgacctcag ccggcaacgc
     2161 gcgaatccca tgctccggac gatcaaacga cgcgaccatc ttgaacagat ccgtttgttc
     2221 accgaccgac gaagcacggc caaagacgtg cagaccggtc gggatcagcc gctgctccat
     2281 ctccagcaac tgctcgtaca gcgcaaaaac ccgcgcatcc cgatctgtat ccggtttctc
     2341 aggcatgaat tgcaggcgcc aacttcacaa actgcgcctg gagtatctcg gcaagccgtc
     2401 gcgtttcttc actcgactca aactctttct gcgtatcgac cacgatcacg cgcgcgcgcg
     2461 tcttccgcag cgcgaagttg agctcgcgca actcggcttc gatcttgaga tggcgcatag
     2521 cgcgcacgtt gagcccattg cgccgcagcg gaacgttgga acgcccgtcg gtgaaaagta
     2581 acacaaccgt ctcgccaaac ttatcgccga cgagcttgat caattcgatc gtcgtgacga
     2641 gccccgcacc gagcggcgtg cttccaccca tccgcaacga atccagcaca cgccgggcac
     2701 gcaatatgct tcgcgacggc ggcaagtcga gattagccgt catcccgtgg aacgaaacga
     2761 tcgccacgct gtcgcgattc aaatacgact tgcgcagcag cttgagaatg gtgctcttcg
     2821 cgcgcgcgat gcgattcgcc gccatgctgc ccgacgcgtc gatcgcaaaa atgaaaagcg
     2881 tcccttgctt gtctttcagc agcttataac gcaacgcatt cgccgagatc ggcgtcaacg
     2941 gcccgcgcgc ttgcgcgacc atcgcacgca tcgtcgcatc aaccgccacg cgcgcgccgt
     3001 tattcttaaa ctcaaccgaa cgcatgtatc gcccgcgcaa ctgctgcatc gcagccttcg
     3061 cgcccgccga acgccgcgtc ttcgcatttg atttgcgcct gtccttgggc tgcaactgat
     3121 cttcaagccg cgactcgcgc gatcgattct cgaccgcggg cggcgatggt ccatccttct
     3181 tgttcggtcg cgcgccgttg cgagacttgg acggagaggg atttggtgga ttaaaaatcg
     3241 gatctcgccc gcccggcgtt gaatcctcat ccggttcgtc ttcatccccg tccccttgat
     3301 cgtgcggttg tggcgccgtt gaattttgtg gcaacacttc ttc
//
LOCUS       DASWTX010000977         1810 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_57713, whole genome shotgun sequence.
ACCESSION   DASWTX010000977 DASWTX010000000
VERSION     DASWTX010000977.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1810
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57713"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..905
                     /locus_tag="VGD38_14875"
     CDS             <1..905
                     /locus_tag="VGD38_14875"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY0729360.1"
                     /translation="GEIDGAFRSWGFARGGTGAISNAIADAAREAGVEIRTEAAIEKI
                     LLRNGRATGVVLQNGDEIHADIVSSSVDPRLTFMKMIGEEHLPDDFCTDLKRYKYRGS
                     SGKVNLALDGLPNFKSMPGPGAHLRGAISISPSVEYMERAYDEAKYGRFSRRPYIDMV
                     IPSLTDPSVAPPGKHVMSCFVQYAPYNLKEGNWDEKRDEFGDTVIDTIAEHAPNIREL
                     IRDRQVVTPLDLEREFGLSEGNIFQGELTLEQLFFLRPAPGWAQYRTPIKNLWMCGSA
                     THPGGGIMGAPGRNAALQLLKDWK"
     gene            919..>1810
                     /locus_tag="VGD38_14880"
     CDS             919..>1810
                     /locus_tag="VGD38_14880"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY0729361.1"
                     /translation="MATYDVTIIGGGHNGLVTACYLAKNGLKTLVLERRDVVGGGAVT
                     EEIHPGFRVSALDHTAGPFSAQVISDLNLPGFGLQMISPPVRALALSPDGRALCIYND
                     TKQTTADIQKFSAKDAKSYPEFVNSFSRIGRVLAPLISMTPPSIDEPSAADLWQLGKV
                     GLAFRGLGKKDEYRLLRWGPMAVADLVSEWFETELLRAVVAARGIHGAFAGPWSAGTS
                     LGLLWQSAMDGSAIGSASYAKGGMGALSDALAKAAQAAGAEIRTRAGVAAIVGADSNE
                     PKVVLESGEEIGSRVVVSNAD"
BASE COUNT          351 a          491 c          599 g          369 t
ORIGIN      
        1 tgggcgagat cgacggtgcg tttcgatcgt ggggttttgc gcgtggcgga acgggcgcga
       61 tctcgaatgc gatcgccgac gcagcgcgcg aagcgggcgt cgagatccgc acggaggcgg
      121 ccattgaaaa gattctgctc aggaacgggc gggccaccgg cgtcgtgctg caaaacggcg
      181 acgagattca cgcggacatt gtttcttcga gtgtcgatcc gcggttgacg tttatgaaga
      241 tgatcggcga agaacatctg ccggatgatt tctgcaccga tctgaagcgt tacaagtatc
      301 gcgggtcgtc aggcaaggtg aatctcgcgc tcgacggttt gccgaatttc aaatcgatgc
      361 ctggaccagg cgcgcatctt cgcggcgcga tctcgatctc gccgagtgtc gaatacatgg
      421 agcgtgctta tgacgaggcg aagtacgggc gcttctcgcg ccggccgtac atcgacatgg
      481 tgattccgag tctgactgat ccttctgtcg cgccgccggg caagcacgtg atgtcgtgct
      541 tcgtgcagta cgcgccgtat aacttgaagg aaggcaactg ggacgagaag cgcgacgagt
      601 ttggcgacac ggtgatcgac acgatcgcgg aacacgcgcc aaacatccgc gagttgattc
      661 gcgatcgaca ggtggtgacg ccgctcgatc tcgaacgcga gtttggcctt tcggaaggca
      721 atatttttca gggcgagctc acgctcgaac agcttttctt tctgcgtccg gcgccgggat
      781 gggcgcagta tcgcacgccg atcaagaacc tttggatgtg tggttcggcg acgcatccgg
      841 gcggtggaat catgggcgcg ccgggacgca acgccgcgct gcaactgcta aaagactgga
      901 aatagcgcga acgcaaagat ggcaacgtac gacgtaacaa tcatcggcgg cggacacaac
      961 ggtttggtga ccgcctgtta ccttgcgaag aacggtttga aaacgctcgt gctcgagcgc
     1021 cgcgatgttg tcggcggcgg agccgttacc gaagagattc atccgggctt tcgtgtctcc
     1081 gcgttggacc acacggccgg tccgttttcc gcacaagtca tatcggattt aaatttgccg
     1141 gggttcggtt tgcaaatgat ctccccaccg gttcgtgccc ttgcgttgtc tcccgacgga
     1201 agagcccttt gcatctacaa cgacaccaaa caaactaccg ccgatattca aaagttttcc
     1261 gccaaggacg cgaagagtta cccggagttc gtcaacagct tctcacgcat cggccgcgtg
     1321 ctggcgccgc tgatctcgat gacgccgccg tcgatcgacg aaccgtcagc tgcggacttg
     1381 tggcaactcg gcaaggtcgg tctcgcgttt cgcggactcg gaaagaagga cgagtatcgg
     1441 ttgttgcgtt ggggaccgat ggcggtcgcc gatctggtga gcgagtggtt tgagacggag
     1501 ctgttacgcg ccgtcgttgc tgcccgcggg atccacggcg cgtttgctgg cccatggtcg
     1561 gcgggaacga gtctcgggtt gttgtggcaa tctgcgatgg acgggagcgc gatcggttcg
     1621 gcgtcgtatg cgaaaggcgg catgggcgcg ctttcagacg cgctcgcgaa agcggcgcaa
     1681 gcagccggag cggagattcg cacacgcgcg ggtgttgcgg cgatcgttgg cgccgacagc
     1741 aatgagccga aggtcgtgct cgaaagcggc gaggagatcg gttcgcgcgt cgtcgtttcg
     1801 aatgctgatc
//
LOCUS       DASWTX010000978         4412 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_11677, whole genome shotgun sequence.
ACCESSION   DASWTX010000978 DASWTX010000000
VERSION     DASWTX010000978.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4412)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4412)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4412
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11677"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            175..2295
                     /locus_tag="VGD38_14885"
     CDS             175..2295
                     /locus_tag="VGD38_14885"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0729362.1"
                     /translation="MFVKPLKILLCFQLATLVALAQTQPKPTPSPEQTDDVVKIFTEL
                     RQTDVMVFDAKGKFVDDLKREDFELRVDGKPTPITFFERVEAGAGNEEAQWLAVRERP
                     TPAKDPVPTTYGRKVIFVVDDIHLSQASIVQAKELIRKYIEYEHTENDEVQIVSASGR
                     IGFFQQLTDNKIVLRKATERLTFYQRTGKDYEVPPMSSYQAFQIERGDTDTLDYFVDE
                     LLKRNRLIPRAQAVDIVRARAANVMRQASHWVSKTLGALDQTIREAASLPGRKLLFFI
                     SDGFLVHSNYTDMSNAIRSLGSNAARAGVVIYSIDARGLAVPLVADGTGSDPTGRLLR
                     ASQGEVFAFQDPLNALAQDSGGRALFNNNDLFTAVENGLKETSFYYLLGWTPERTDDN
                     PNKFRRLELAVIGRPDLTVRVRKGSFNLERPKRQETAKPQPVEAKLQEALVAKTPVRD
                     LPLAMAVSYVDTPDKGSSLSVSMEIPTEVLSSNADDEKLSASVDFAGAVFDQEGKSTS
                     TFGQRVTLREALKTDGRRLKYTHTVFPKPGLYQVRVVARDALSGRVGTAKSWIEIPNL
                     TQKKLTLSSIVVGERLASNNAEVVGVPRLFSNQIPLNIARRFKPDSFLRCLVFVYNAT
                     RTGSDLVPDIAIQVQVLRNNKPVITTPVKQIPTQPTHDQDRLPYATEISLKGLAPGRY
                     VLSISAIDRAARTSASEQLRFDVQ"
     gene            2626..>4412
                     /locus_tag="VGD38_14890"
     CDS             2626..>4412
                     /locus_tag="VGD38_14890"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0729363.1"
                     /translation="MGQATTGTLTGLVTDPQGAIVSGATITLTNSQTRIEAKTTSNDQ
                     GEFVFPQVTPGRYSLSVEATNFKKALATDLVVEVGITSRTTVVLEVGSVTEQVTITAT
                     QDIVNSSTPTLTSVINTRQVQDLPLPTRNPLDLAGLQPGVAVTGTDNRGSSISGLRQT
                     SVHLTQDGINAMDNFVKTSSLFAISAPSLNSTSEFSITTGTNDSGSGRGVGQVRLVTR
                     GGTNDFHGDVFYLNRNDYFQANNFFNNLAGTPRARQNQHFFGFAVGGPMFGPRFGEGG
                     PAIWNGRDRAFWFFSYEGFRENFSATRNRTVLTEQAKQGIFRYTGANGALTSVNLLAI
                     GNAAALNPVTLAQLNAMPLPNNNLVGDTLNTAGFRYNVTGKDVNDKYVFRYDHVLVQD
                     SDYGSHKLEFVYNRATFNLSPDTFNGLEAPFPGGVDAFQASTRSLVTAALHSTFGNVT
                     NEVRYGRQWAPVAFLRTSSPANPFFTSFASVTNFDNTFMSQGRETTVTQWIDNMAIPK
                     GSHTIRLGADYQELFADTFNDAGIQPTVTLGSNTQNSNGIVAGDFTNLPAGATGNAIV
                     TRAQNVFADVTGFLASAAATFNVTTPTSG"
BASE COUNT         1029 a         1233 c         1173 g          977 t
ORIGIN      
        1 tggggatcga gtttgtggtg aacctcgatc agcgctggcc ggcgtttcgc ttcacgcgga
       61 agttttggga gttttatctc tcgatgattt tccgcggcaa ggaactctcg ttcgaattcg
      121 aagtcgttaa gtaattgaat agcgcttcct gttggttgta agctggcggc ttcaatgttc
      181 gtcaagcccc tcaaaattct tttgtgtttt cagttggcca cgctggttgc gctggcccaa
      241 acacagccca agccgactcc ctcgcccgaa cagactgacg acgtcgtcaa gatcttcacc
      301 gaactacgac agactgacgt gatggtcttc gacgcgaagg gaaagtttgt cgacgacttg
      361 aagcgtgaag actttgaact gcgtgtcgac ggtaagccga cgccgattac attcttcgaa
      421 cgtgtcgaag ccggagccgg caacgaagag gcgcagtggc tcgccgtgcg cgaacggcca
      481 acgccggcga aagaccccgt accaacaacg tacggccgca aagtgatctt cgtcgtcgac
      541 gacatacatc tctcgcaggc gagcatcgtg caggcgaagg agttgatccg gaagtacatc
      601 gaatacgagc atactgaaaa cgacgaagta cagatcgtca gcgcgagcgg acgcattggt
      661 ttctttcaac aactaaccga caacaagatc gttctacgca aagccactga gcggttgacc
      721 ttctatcaac gaacgggcaa ggactacgaa gttccgccga tgagttcgta ccaggcgttt
      781 cagatcgaac gcggcgacac tgacacgctc gattacttcg tcgatgaatt actcaaacgc
      841 aatcgtctaa tcccgcgagc gcaggcagtg gatattgtgc gcgcgcgtgc ggctaacgtc
      901 atgcgccagg cgtcgcattg ggtgtcgaag acattgggcg cgttggacca gacgattcgt
      961 gaggcggcga gtctgcccgg acgcaagttg ttgtttttta tctccgatgg atttctcgtt
     1021 cattcgaact acacggacat gagcaacgcg attcgatcgc tcggatcgaa tgcggcgcgc
     1081 gccggtgtag tgatctattc gatcgatgcg cgtggattag ccgtcccttt ggttgccgat
     1141 ggaaccggca gcgatccgac gggacgtttg ctgcgcgcga gtcaggggga agtgtttgcg
     1201 tttcaggatc cactcaacgc gctcgcacaa gacagtggcg gccgcgcgct cttcaacaac
     1261 aacgatctct tcacggcagt cgagaatggt ttgaaggaaa cgtctttcta ctacttgctt
     1321 ggatggacac ctgaacgaac ggacgacaat ccgaataagt ttcgccggct cgagctcgca
     1381 gtgatcggta gaccagattt gactgtacgt gtgcgcaaag gatctttcaa tctcgagaga
     1441 ccgaagcgtc aggaaactgc aaagccgcaa cccgtcgaag caaagttaca ggaagcgctc
     1501 gtcgctaaaa ctcccgtgcg cgatcttcct ctcgcgatgg ccgtcagtta cgtcgataca
     1561 cctgacaaag gatcttcgtt gagtgtgtcg atggagattc cgacagaagt tctttcatca
     1621 aacgccgatg atgaaaaact ttctgcgagc gttgatttcg ccggcgcggt tttcgatcag
     1681 gaaggaaagt cgacgagtac attcggacaa cgagtcacac ttcgtgaagc gttgaaaaca
     1741 gatggccgaa gactgaagta cacgcacact gtttttccaa aacctggctt gtatcaggtt
     1801 cgtgttgtgg cgcgtgatgc actctcggga agagttggaa cagcgaagtc gtggatcgag
     1861 ataccaaatc tcacgcaaaa gaaattgacg cttagcagta tcgtagttgg agaacgttta
     1921 gcgtcgaata acgcagaagt agttggagtg ccgcgcttgt tttcaaatca gattccactg
     1981 aacatcgcgc gacgcttcaa accggattcg tttttgcgtt gtctcgtttt tgtttacaac
     2041 gcaacacgca cgggatcgga tctagtgccg gacattgcga tccaggtgca ggtgctgcgc
     2101 aacaacaaac ccgtcatcac gacgccggtc aagcagatac ccacacagcc gactcacgat
     2161 caagatcggc tcccgtatgc gactgagatt tcgctgaagg gattggcgcc gggtcgatac
     2221 gttttgagca tcagcgccat cgaccgcgcg gccaggacaa gcgcctccga acaactgcgt
     2281 tttgacgtgc agtgacccca acccgctcaa cgtgagttct ccaagtaaat ggagcaaaat
     2341 ccaaatttgt aaattatggt cgcggagggg tgttcagatc ctcagacaaa acgcacgtta
     2401 cgctagctaa acctccggca tatcgtttgc acccccgaaa ttttggttaa tcacgcaact
     2461 acacccttca gcagtaacca ctacagcatg cggatttccg gaggagccaa aatgaggaga
     2521 ttctttcttt cgccacgcac tctctcagct acccggccgg tcgcctaccg cgcattcatg
     2581 gtgaccgccg tactggcttt gacctgctgg ctcgctctac ccgtaatggg tcaagctacg
     2641 acgggtaccc ttacgggact cgtcacagac cctcaaggcg ccatcgtttc tggcgccacc
     2701 atcacactga ctaacagtca gacgagaatt gaagctaaaa ccacctcgaa cgatcagggt
     2761 gaattcgttt tcccgcaagt aacgccggga agatattcac tctcagttga agcgaccaac
     2821 ttcaagaagg cgctggctac tgatcttgtc gtcgaagtcg gtatcacctc ccgcacgacc
     2881 gttgttctcg aagtcggttc ggttacagaa caagtgacca tcaccgcaac gcaggacatc
     2941 gttaactcga gtactccgac gctgaccagc gtcatcaaca cgcgccaggt tcaggacctc
     3001 ccgttgccaa cgagaaatcc tctcgacctg gctggtctgc aacccggtgt tgcagtcaca
     3061 ggaacagaca atcgtggttc atccatcagc ggtcttcgtc aaacgtcagt tcacctgacg
     3121 caagacggca tcaacgcgat ggacaacttc gtgaagacga gttcgctgtt tgctatcagc
     3181 gcgccgtcgt tgaactcgac gagtgaattc agtatcacca ccggaaccaa cgattcaggt
     3241 tccggacgcg gcgtcggcca ggtgcggctt gtgactcgcg gtggtacgaa cgattttcac
     3301 ggcgacgtgt tctacctgaa tcgcaacgac tacttccagg ctaacaactt cttcaacaac
     3361 ctggccggca caccaagagc tcgtcagaac cagcacttct ttggttttgc ggttggtggt
     3421 ccaatgtttg gcccaaggtt tggtgaaggc ggcccggcaa tctggaacgg acgcgatcgc
     3481 gcgttctggt tcttctcgta cgaaggtttc cgcgagaact tctccgcgac acgaaatcgc
     3541 accgtgttga cggagcaagc gaaacaggga atcttccgtt acaccggcgc gaatggcgcg
     3601 cttacgtcag ttaacctgct ggcgatcggt aatgccgccg cgctcaatcc ggttacgttg
     3661 gcccaactca acgcgatgcc gctgccgaat aacaatttgg ttggcgacac gctgaacaca
     3721 gcgggtttcc gttacaacgt tacgggtaaa gatgtaaacg ataagtacgt gttccgttac
     3781 gaccacgtgc tggtccagga ttccgactac ggttcacaca aactcgaatt tgtgtacaac
     3841 cgtgcgacgt tcaatctctc gccggatacc ttcaatggtc tcgaggcgcc gttcccgggc
     3901 ggcgtcgatg ccttccaggc ttcgaccaga tctttggtca cggctgcctt gcactcgacc
     3961 ttcggcaacg tcaccaatga agtccgctat ggacgtcagt gggcgccggt tgccttcttg
     4021 agaacctctt cgcctgctaa cccgttcttt acctcgtttg cctcggtcac gaactttgac
     4081 aacacgttca tgagccaggg acgcgaaaca acggtcacgc agtggatcga caacatggcg
     4141 atcccgaaag gctcgcacac gattcgcctc ggcgctgact accaggagct cttcgctgac
     4201 acgttcaacg atgccggtat tcagccgact gttactcttg gtagcaatac ccagaacagc
     4261 aacggtatcg tggccggcga cttcacgaac ctaccggcgg gcgccactgg caatgccatc
     4321 gtcacgcgcg cgcaaaacgt gttcgccgac gtcactggtt tccttgcatc agcagcggcg
     4381 acctttaacg tcacgacgcc gacatccgga tt
//
LOCUS       DASWTX010000979         4387 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_318737, whole genome shotgun sequence.
ACCESSION   DASWTX010000979 DASWTX010000000
VERSION     DASWTX010000979.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4387)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4387)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4387
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318737"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2032
                     /locus_tag="VGD38_14895"
     CDS             <1..2032
                     /locus_tag="VGD38_14895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729364.1"
                     /translation="LQQGTRTMSTQIPTDAMIFYDNYEAPLTAGSYRFVLQQTVNVEG
                     DEARHYYYDQRFEVLAPRYAIDNEEIQAYFPPNGGVADYQNVLPHLVLLTRNLPWERT
                     LSSKREPWLALLVLSEQDIADGQVVFSTSTIAELAPHTADDLPFNEDAPGPWLRPDGI
                     DRVLLPKFKRTEDSNTPVRLLDLDLKLFRKLCPSRNELPLLAHIRHVDTADKVPLEMV
                     ANGEFSVLVANRFPPPGTNTVYLISLEGWNELLDADPNEQQPASRVRLITLGSWSFVN
                     DPSGRDTFGGLMQQLKKNAAVFGVSLPGTTGHTHVDNALQRGYVPLDYKPLNSTPTMA
                     WYRGPLAPFPKQRLNRPAFERADAALIFDDKNGMLDVSYASAWELGRLLALSSPAFAK
                     GLHLFVERSQNASEFAKEIEEFLKQHRTSFKDPSTVAPAPPNEQVKIADDLVEWIARL
                     VLLYPVPFHYLVPHQSLLPQESLRFFYLDDNWVNAMVDGALSIAVRTVEKRASSRADL
                     QSVLSKIVYQYRLRLQGKQPEWNPSENYVGTTKTGFLLRSSIVSNWPGVEVTATTKAS
                     ADPNLPKILRLDHIAEGILFCLARGSLETVTFREPREGITFGVSSDGKVKATKSGKIL
                     EVKKDLLRAAPPPGVLDITKLRDQLACNGSADLATEMIRKPEQQDINWTTRV"
     gene            2043..>4387
                     /locus_tag="VGD38_14900"
     CDS             2043..>4387
                     /locus_tag="VGD38_14900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729365.1"
                     /translation="MDSQHLLVPIKVQALVIDDIVFQKRGVIEIEPKRYAANDGRWSP
                     QLFDYGVLPASLIAPGPRPFYGARRTYQGDPADQLVLDADSPALLEEKDRGVYLHWVL
                     PSGLRHAYTPGLLDFPALPDHWLIVRFTRSNAGLKTNAWFVDGGSLASDAGPANLLFA
                     ETDKYEARRVGKVVPLEQFASANFAGEPTKITALGNTTTGSPTFTAFIAENRNIFSWH
                     DKLEDLRQPNAQGSVPQGTTVSYLLAGWYRVQANEALASPAVKVTEKRDESNKLLGML
                     IDPPGWFVETNTAIPDLPKRRSVFHGMVVHINYWSAGTYKGQILGYPGAPRVEGSLGK
                     DTPAFQVGVGNSAEDALVSLVSSSYSGEQEVGMAKEAPNLWKALEAVIYRQPETLVRS
                     WNASPRDNAVHQNWFATHEAGKLWFIRPKADDKGVFPSEPEKTAKQAKIKPTDQQLAD
                     LQRLNEVQAEADAVTRDLAALQQELYARWWRVAGKSRVFRASLTAEAKDVRELASRVK
                     DLQTTRERLLGQLATMPDQLKAKLPKDELELKYDAAPRFWIPADPVIVVRNCGCPSKH
                     QFPRPLPCRLPEQIVTAVDVAVDQKDKKSFTKANGVAEIAAAAQKHLPACPQILSSLV
                     DEGSIVEQAIADLTERTLPAGKKFDTAELWQTWVHRLVHDLTWDGDNESFPHDQVTFD
                     KQGIRPFRLVELWGRQPWSPLFLDWQITWFPTADLPSTQDGFGPTWPLRNFDYQPSDR
                     KSIPTTGYTIRGRSLLSPIDGRIFDEPINTLRQLIHGKQTR"
BASE COUNT          967 a         1312 c         1255 g          853 t
ORIGIN      
        1 gttacaacaa ggcaccagaa caatgtcgac tcaaataccg actgacgcaa tgatctttta
       61 cgacaactac gaggcgccct taactgccgg ctcgtatcgc ttcgttctgc aacagaccgt
      121 aaacgtcgaa ggcgatgagg cgcgtcatta ttactacgac cagcgtttcg aggttctggc
      181 gccgcgttat gcgatcgaca acgaggaaat ccaggcttac tttccgccca acggcggcgt
      241 cgccgattac cagaacgtgc tgccgcatct cgtgttgctc acacgcaatc tgccgtggga
      301 acgaacgctt tcgtcgaaac gcgaaccgtg gctcgcgctg ctggtgcttt ccgagcagga
      361 catcgccgac ggacaagtcg tgttcagtac gagcacgatc gcggagcttg cgccgcatac
      421 ggctgacgat cttcccttca acgaagacgc gccgggaccg tggttgcggc ctgatgggat
      481 cgacagggtt ctgttgccga aattcaaacg tacggaagac tcaaacactc cggtgcggtt
      541 gctcgatctc gatctcaaac tgtttcgcaa actctgcccg tctcgcaacg agcttccgct
      601 gctcgcgcac attcgtcacg tagacaccgc cgacaaagtc ccgctcgaga tggtcgcgaa
      661 tggagagttt tccgtgctcg tggcgaatcg ctttccacca ccgggtacga acaccgtcta
      721 tctgatctcg ctcgaaggct ggaacgagtt gctcgacgcc gatccgaacg agcagcagcc
      781 tgcttcgcgt gtgcggctca taacgctcgg cagttggagc tttgtaaacg atccgtccgg
      841 acgcgacacg tttggcggat tgatgcagca attgaagaag aacgcggccg tgtttggtgt
      901 ctcgttgcct ggaactaccg gacacactca cgtcgacaat gcgctccagc gtggttacgt
      961 gccgctcgat tacaagccgt tgaatagcac gccaacgatg gcctggtatc gtggtccatt
     1021 ggcgcccttt ccgaaacaac gcctgaaccg cccggctttc gagcgcgcgg atgcagcgct
     1081 gatcttcgac gacaagaacg gcatgctgga cgtgtcgtat gcgtcggcgt gggagctcgg
     1141 ccgtttgctc gcgctgtcgt cgccggcgtt tgcgaaaggg ctgcacctgt ttgtcgaacg
     1201 cagtcaaaac gcttccgagt tcgcgaaaga gatcgaggag tttctcaaac agcatcgcac
     1261 gtcgtttaaa gatccgagca cagtcgcgcc ggcgccgccg aacgagcagg tcaagatcgc
     1321 ggacgacctc gtcgaatgga tcgcgcggct cgtgttgttg tatccggtgc cgtttcacta
     1381 cctcgtgccg catcagtcgc tgttgccgca ggaatcgctg cgcttctttt atctcgacga
     1441 caactgggtg aacgcgatgg tcgacggcgc gctcagcatc gcggtgcgca ctgtcgaaaa
     1501 acgcgcgtcg tcgcgcgcgg atttgcaatc ggtgttgtcg aagattgttt accagtaccg
     1561 gcttcggttg caggggaaac agccggaatg gaacccttcc gaaaattacg tcggcaccac
     1621 caaaacagga tttctcttgc gttcgagcat cgtgagtaac tggcccggtg ttgaagtaac
     1681 tgccacaacc aaagcttcgg ccgatccgaa cctgccgaag atcctgcgtc tcgatcacat
     1741 cgcggaaggc atcctgtttt gtctcgcgcg cggctcgctg gaaacagtga cattccgcga
     1801 accgcgcgaa ggcatcactt tcggcgtgag cagcgacggc aaagtgaaag ctacgaagtc
     1861 tggcaaaatt ctcgaggtca aaaaagacct gctacgcgcc gcaccgccac ccggagttct
     1921 cgacatcacg aagctgcgcg atcagttggc gtgcaacggc tccgccgatc tcgcaaccga
     1981 gatgatccgc aagcccgaac agcaggacat caactggacc acacgcgttt aaggaaactg
     2041 ttatggactc acagcatctg cttgtgccga tcaaggtgca ggcgctggtt attgacgaca
     2101 tcgtatttca gaagcgtggc gtcatcgaaa tcgagccgaa gcgatacgcc gcgaacgacg
     2161 ggcgctggtc gccgcagttg ttcgattacg gggttctacc ggcgtcgcta attgcgcctg
     2221 gcccacgacc gttttacgga gcaagacgaa cttaccaggg cgatcccgcg gaccaactcg
     2281 tgctcgacgc ggattcgccg gcgttgttgg aagagaagga tcgcggcgtc tatttacatt
     2341 gggtgctgcc ctcgggactg cgtcacgctt acacgccggg cttgctcgat tttcccgcgt
     2401 tgccggatca ctggctgatc gtgcgcttca cacggtccaa cgcaggtctc aaaacaaacg
     2461 catggtttgt cgacggtggt tcgttggcga gtgacgctgg tccagcgaat ctgttgtttg
     2521 ccgaaactga taaatacgag gcgcgacggg tgggcaaagt cgtaccactc gagcagttcg
     2581 catccgccaa cttcgccggc gagcccacga agatcaccgc gctcggaaac acaaccaccg
     2641 gctcgccaac attcaccgcc ttcatcgccg aaaatcgcaa catcttctcg tggcacgaca
     2701 agctcgaaga cctgcgccag ccaaacgcac agggaagcgt gccccaggga accacggtca
     2761 gttacctgtt ggccggctgg tatcgagtgc aggcgaatga agcgctcgcg tcgcccgcag
     2821 tcaaagtcac ggagaagcgc gacgaaagta acaagctgct cggcatgctg atcgatccgc
     2881 caggttggtt cgtcgaaaca aacaccgcga ttcccgatct gcccaaacgc cgctcggtat
     2941 ttcacggcat ggtcgtgcac atcaactact ggagcgccgg cacgtataag ggacagattc
     3001 tcggttatcc cggtgcgcct cgtgtcgaag gctctctcgg caaagacacg cccgcgtttc
     3061 aggtcggcgt tggcaacagc gccgaagacg cgctcgtttc cctcgtgtcg agttcgtaca
     3121 gcggcgagca ggaagtcggc atggcgaaag aagcgccgaa cctttggaaa gctctcgaag
     3181 ccgtcatcta tcgccaaccg gaaacgctcg tgcggagttg gaacgcatcg ccgcgcgaca
     3241 acgcggttca tcagaactgg tttgcgacac acgaagcggg caagctctgg ttcattcgcc
     3301 ccaaagccga cgacaaaggc gtgtttccca gcgagcctga aaagacggcg aagcaggcca
     3361 agatcaaacc gacagaccag cagctcgcgg atcttcagcg gctcaacgaa gtgcaagcag
     3421 aagcagacgc tgtgacgcgc gatctcgccg cgttgcaaca ggagctctac gcgcgctggt
     3481 ggcgagtcgc cgggaagtcg cgtgtgtttc gcgcgagtct taccgcggaa gcaaaagacg
     3541 tgagagagct cgcgagtcgt gttaaggatc tgcaaacaac acgcgagcgt ttgcttggcc
     3601 agctcgcaac gatgcccgat cagttaaagg ccaagctgcc gaaggacgag ctcgaactca
     3661 aatacgacgc ggcgccgcga ttctggattc ctgccgatcc cgtcatcgtc gttcggaatt
     3721 gcggctgtcc gtcgaagcac cagtttccgc gtccacttcc ctgccgcttg cccgaacaga
     3781 tcgtcacggc agtcgacgtc gcggtggacc agaaagacaa gaagtcgttc acgaaagcca
     3841 acggcgtcgc cgagattgcc gcggccgcgc agaagcacct gccggcgtgt ccgcagatcc
     3901 tgagcagtct cgtcgacgaa ggctcaatcg tcgaacaagc aatcgctgac ctgactgaaa
     3961 gaactctacc ggccggcaag aaattcgaca ccgctgaact gtggcagacg tgggttcacc
     4021 ggctcgtcca cgatctcaca tgggacggtg acaacgaatc cttcccgcac gatcaagtga
     4081 cgtttgataa acaaggcatt cggccatttc gcctcgtgga gctgtgggga cggcaaccgt
     4141 ggtcgccgct gtttctcgac tggcagatca cgtggtttcc gacagccgac ttgccttcaa
     4201 cacaagacgg ttttggtcca acgtggccgt tgcgcaattt tgattaccag ccgtcggacc
     4261 gtaaatcgat tccgacaaca ggctacacca ttcgcggccg cagtttactg agcccgatcg
     4321 acggacgcat cttcgacgaa cccatcaaca cgctgcgcca actgatccac ggaaaacaaa
     4381 ctcgcga
//
LOCUS       DASWTX010000980         1861 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_424330, whole genome shotgun sequence.
ACCESSION   DASWTX010000980 DASWTX010000000
VERSION     DASWTX010000980.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1861)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1861)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1861
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424330"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1304)
                     /locus_tag="VGD38_14905"
     CDS             complement(<1..1304)
                     /locus_tag="VGD38_14905"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY0729366.1"
                     /translation="MSEQQQARILIAEDEANLRLVLQKELERLGYRVQAAPDGEAALR
                     KLEESNVDVLLCDINMPRIDGMELLRRVHQRPNPPEVIMLTGQATVETAVEAMKLGAY
                     DYLTKPYSITELDVRVKQAADTRRLRVDNTRLREQLARQSALPEIVSVSELMKEAIRL
                     IERVAPSEASVLITGESGTGKELVAHAIHRLSNRAEASFVDLNCAAVQESLLESELFG
                     YEAGAFSGAKGRKLGLIELADGGTLFLDEVTELPAQLQAKLLRAIETRTFFRVGGVRK
                     VEVNVRIVAATNRNLDTVVNDGVFRSDLLYRINGFQISLAPLRERPEDVEPLTKYLLK
                     QIAGTHPPELTDDAFTALRAYHWPGNVRQLKNCLERAVILSNNGRITLSELPPEVTRP
                     AMVQPVVPGVAPVAAVPGEAPLPVPAVPSTPGSLREVERQQIL"
     gene            complement(1297..>1861)
                     /locus_tag="VGD38_14910"
     CDS             complement(1297..>1861)
                     /locus_tag="VGD38_14910"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY0729367.1"
                     /translation="EYLGLIRSEAFRCKSITMGLLDVSRTRTSQHVTIDLGDVLRSAA
                     RLLSHQKRSPEVQFKLDVALDLSPVSGDPGQLQQAVIALATNAFDAMGDAGSLSIMAR
                     NDGVKVVVEVADTGVGIPPENLPKIFEPFYTTKEVGRGTGLGLAVCYGILTEHGGTLD
                     VQSTVGTGTTFTITLPAIKQNEDSTVE"
BASE COUNT          389 a          636 c          476 g          360 t
ORIGIN      
        1 agaatctgtt ggcgctcgac ttctcttaat gaacccggcg ttgaaggcac agcaggcacc
       61 ggcaacggcg cttcacccgg aaccgcagcg accggcgcca caccaggcac aacaggttgg
      121 accatcgcag gccgcgtgac ttccggcggc aactccgaca gcgtgatccg cccgttgttc
      181 gacagtatca ccgctcgctc caaacagttc ttcaactgcc gcacattccc cggccagtga
      241 tacgcacgca acgcagtaaa cgcatcgtca gtaagctccg gcggatgcgt gcccgcaatc
      301 tgcttgagca ggtacttcgt caacggctcg acgtcttcag gccgctcgcg taacggcgcg
      361 agactgatct gaaaaccatt aatgcgatag agcaaatccg acctgaacac tccatcatta
      421 acaaccgtat ccaggttccg attcgtcgcc gcaacgatgc gcacgttaac ctcaaccttg
      481 cgcacaccgc caactctgaa aaacgttcgc gtctcgatcg cgcgcaacag cttcgcctgc
      541 aactgcgccg gcagctccgt cacttcatcc agaaacaacg tcccgccgtc agccaattcg
      601 atcagcccga gcttccggcc cttcgcgccc gaaaacgcgc ccgcttcgta accaaacaac
      661 tccgactcca gcaacgactc ctgaaccgcc gcgcagttca gatccacaaa cgacgcttcc
      721 gcacgattcg acaaacggtg aatcgcatgg gccaccaact cttttcccgt tcccgactcg
      781 cccgtgatca gcaccgacgc ttccgacggc gccacacgtt caatcaaccg gatcgcttcc
      841 ttcatcaact ccgaaacaga aacgatctcc ggcaacgcag actgccgcgc gagctgttcc
      901 cgcagccgcg tgttgtcgac gcgcaaccgc cgcgtgtccg cggcctgctt cacgcgcacg
      961 tcgagctcgg tgatgctgta aggcttcgtg aggtaatcgt aagcgccgag cttcatcgct
     1021 tcgacggcgg tctcaaccgt cgcctggccc gtcaacatga tcacctcggg cggattcggc
     1081 cgctgatgca cgcgacgcaa aagctccatg ccgtcgatgc gcggcatgtt gatgtcacac
     1141 agcaaaacat cgacgttgct ctcctccagc ttgcgcagcg cggcttcgcc gtcaggcgcc
     1201 gcctgcaccc tgtaacccaa acgttccaac tccttttgca acaccagccg gaggttggcc
     1261 tcgtcttctg cgatcagaat tcgtgcttgc tgttgctcac tcaaccgttg agtcctcgtt
     1321 ttgcttgatt gcgggaagag taatggtgaa cgtggtgcct gttcccactg tcgattgcac
     1381 gtcgagggta ccgccgtgct cggttaagat accataacac acggcgaggc cgagacccgt
     1441 tccccgcccg acctccttcg tcgtatagaa cggctcgaag attttaggca ggttttccgg
     1501 cggaattccg acgcccgtgt cggccacctc gacgacgact ttcacgccgt cattgcgcgc
     1561 cataatcgac aacgaccctg cgtcgcccat cgcatcaaac gcgttcgtgg ccagcgcgat
     1621 cactgcttgt tgcaactggc cgggatcgcc tgaaaccggg ctcagatcga gcgcgacgtc
     1681 gagcttgaat tgaacctccg gactgcgctt ctgatgtgac agcaaacgag ccgcggaacg
     1741 aagcacgtcg ccgagatcga tcgtcacgtg ttgcgaggtg cgtgtgcggc tgacgtccaa
     1801 caggcccatc gtgatgctct tgcaacgaaa cgcctcgctc cggattagac caagatactc
     1861 g
//
LOCUS       DASWTX010000981         2478 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_185215, whole genome shotgun sequence.
ACCESSION   DASWTX010000981 DASWTX010000000
VERSION     DASWTX010000981.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2478
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185215"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1596)
                     /locus_tag="VGD38_14915"
     CDS             complement(<1..1596)
                     /locus_tag="VGD38_14915"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3857 domain-containing protein"
                     /protein_id="HEY0729368.1"
                     /translation="MKIPPSFFLPVALVVCLLAVISLAVAAPATPVFDDWKPVDPAEL
                     TLKTPMVEKEADAEGLFWEVRIDDSPDGDLIFNHYLRVKVFTERGRESQSKIDLPFGN
                     FYGGEVRIKDIAARTIKPDGSIVELKKEDIFERTIVKVSGLKVKARSFAMPSVEPGCI
                     IEYRWREVRVKDSAHYLRLQFQRDIPVRRVQYIVKPYDYVGLSFNSITMHGQSAPWVK
                     EKNGFYSTTMTNMPAMLEEARMPPEDQVKTWMLVYYAAGDKQPDPVKYWIDVGKRYYD
                     ENKSLIKPNDEVKKMAATLIAEAKTDDEKLQRLFEFCRSRIKNWNDDASGLTDEERQK
                     AKENKNPGDTLKRGIGSGRDIDTLFAALANAAGFDARIALSPDRGDLFFDKALPNSYF
                     IAPRNIAVNVGGTWKFFNPGYNYVPYGMLLWREEGEQALITDPKQPIWVDTPMSLPEK
                     SQIKRRAKLKLTEDGTLEGDISVEYSGHFAIDRKEEIDEESETQRVDRWKEEIKARMS
                     AAELSDIKIENATDHEKPLTYMFH"
     gene            1758..>2478
                     /locus_tag="VGD38_14920"
     CDS             1758..>2478
                     /locus_tag="VGD38_14920"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: protein motif:HMM:NF006707.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I fructose-bisphosphate aldolase"
                     /protein_id="HEY0729369.1"
                     /translation="MATELKRSDAMDRIAELLGADASKLLDHKSETISKDDLQLPGPD
                     FVDRVWGISDRSPRVLRSLQTLFDNGRLAGTGYLSILPVDQGIEHSAGASFAPNPQYF
                     DPENIVKLAIEGGCNAVASTFGVLGVVGRKYAHKIPFIVKINHNELLTLPNKFDQVLF
                     GTVKEAHNLGAVAVGATIYFGSDESTRQIVEISEKFAEAHELGMACILWCYLRNGKYK
                     TPEGDMHASADLTSQANHLGVT"
BASE COUNT          499 a          703 c          687 g          589 t
ORIGIN      
        1 gtggaacatg tacgtcagcg gtttctcgtg gtccgtcgcg ttctcgatct tgatatccga
       61 aagctcggcc gcgctcatac gagccttgat ctcttctttc caacgatcga cgcgctgtgt
      121 ttccgattct tcatcgatct cttccttacg gtcgattgcg aagtggccgg agtattcgac
      181 gctgatgtcg ccttcgagcg tgccgtcctc agtcagcttc agtttcgcgc gacgtttgat
      241 ttgcgacttc tccggtagcg acatcggcgt gtcgacccag atcggctgct taggatcggt
      301 aatcagcgcc tgttcgcctt cttcgcgcca gagcaacatg ccgtaaggaa cgtagttgta
      361 accgggattg aaaaacttcc acgtgccgcc gacgttcacg gcaatatttc tcggagcgat
      421 gaagtaggaa ttgggcaaag ccttatcgaa aaagaggtcg ccgcgatcgg gcgagagcgc
      481 gatacgggcg tcaaagccgg cggcatttgc cagcgccgcg aaaagcgtgt cgatgtctct
      541 gccgctgccg attcctcgtt tcagcgtgtc gccggggttt ttgttctctt tcgccttttg
      601 gcgttcttcg tccgttagac cagacgcgtc gtcgttccag ttcttgatcc tggaccggca
      661 gaattcaaac aagcgctgca gcttctcatc atccgttttg gcttcggcga tgagcgtcgc
      721 agccatcttt ttcacttcgt cgtttggttt gattagcgac ttgttctcgt cgtaataacg
      781 tttgccgacg tcgatccaat acttgaccgg atcgggctgc ttgtcgccgg cggcgtaata
      841 aacgagcatc cacgttttca cctgatcctc aggcggcatg cgcgcttctt ccagcatggc
      901 gggcatgttt gtcatcgtgg tgctgtagaa accgttcttc tccttgaccc acggagctga
      961 ctggccgtgc atcgtgatcg agttgaaact caggcccacg tagtcgtacg gcttgacgat
     1021 gtactgaacg cgccgcacgg gaatgtcgcg ctggaattgc agacgcagat aatgcgcgct
     1081 gtctttcacg cgcacttcgc gccagcgata ctcgatgatg cagcccggct cgaccgaagg
     1141 catcgcaaac gaacgggcct tcacttttag accactcact ttcacgatgg tccgttcgaa
     1201 gatgtcctct ttcttcagct cgacgattga accatcgggc ttgatggtcc gggccgcaat
     1261 gtctttgatc ctcacctcgc cgccgtagaa gttgccgaaa ggcaggtcga tcttgctttg
     1321 cgattcgcgt ccgcgttcgg tgaagacttt gacgcgcagg tagtggttga aaatcaggtc
     1381 gccgtcgggg ctgtcgtcga ttctgacttc ccaaaacagc ccttcagcgt cggcctcttt
     1441 ctcgaccatt ggcgttttga gggtcaactc tgccggatcg accggcttcc agtcgtcaaa
     1501 aaccggcgtt gcgggagccg cgacggccag tgaaatcacg gccagcaggc acactacaag
     1561 ggcgactggg agaaagaacg agggaggaat cttcatttgt ttacctttcc aactaaaacg
     1621 tcgcttggtt gaagttaacc gccgtcgagc gggtaaggag accgaggtta ccgctggtag
     1681 cggaacgcaa tattacccga taatttgctc ggccatcaac cgaatcgtat aattcgcgca
     1741 tcactctgga ggaaacgatg gctaccgaac taaaacgctc agacgcgatg gaccgaattg
     1801 ccgagttgct cggcgcagac gcctcaaaac tactggacca caagtccgaa acgatctcga
     1861 aagacgatct tcaactgccg ggaccggact ttgtcgaccg tgtgtggggc atttcggacc
     1921 gttcaccgag ggtgcttcgt tcgctgcaga cgttgtttga taacggccgc ctcgccggca
     1981 ccggctatct ctcgattttg ccggttgacc agggcatcga gcactcggcg ggcgcctcgt
     2041 ttgctccgaa tccgcagtat ttcgaccccg agaacatcgt caaactagcc atcgaaggcg
     2101 gctgtaacgc cgtcgcttcg accttcggcg tgctcggtgt ggtcgggcgg aagtacgccc
     2161 acaagatccc gtttatcgtg aagatcaatc acaacgagtt gctgacgctg ccaaacaagt
     2221 tcgatcaggt gctgtttgga actgtcaaag aagcgcacaa cctcggtgcg gtcgctgtcg
     2281 gcgccacgat ctacttcggc tcggatgagt ccacgcgcca gatcgtggaa atatccgaaa
     2341 agtttgccga ggcccacgag ctcggaatgg cctgtattct ttggtgctac ctgcgtaatg
     2401 ggaaatacaa aacgcccgaa ggcgacatgc acgcctcggc cgatctcacg agccaggcaa
     2461 atcacctcgg cgtgacga
//
LOCUS       DASWTX010000982         1821 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_272607, whole genome shotgun sequence.
ACCESSION   DASWTX010000982 DASWTX010000000
VERSION     DASWTX010000982.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1821)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1821
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272607"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            115..612
                     /locus_tag="VGD38_14925"
     CDS             115..612
                     /locus_tag="VGD38_14925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729370.1"
                     /translation="MSEDVTNKLLQSTDEKLTLVLTLVQSLTVRDNNIDLRLNSIDSR
                     LDKLDSRLETIDSRLVHVEQTVSDMRPVLQKLSTDVGQLQEGQRRLEEGQLQLQTTVL
                     QLQDGQQQLQEGQEIIASEVHTFRRDFSHRFLVLSGATNAEIRDLKERVTRVEQNLNP
                     PKRGT"
     gene            678..1154
                     /gene="ribH"
                     /locus_tag="VGD38_14930"
     CDS             678..1154
                     /gene="ribH"
                     /locus_tag="VGD38_14930"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: protein motif:HMM:NF013081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEY0729371.1"
                     /translation="MQPTVHEGRLNAEGFRFAIVASRWNEFITGRLVEGSMDALERLG
                     AKEGLVTVYRVPGAFEIPLLALRLAQSRRFDAIICLGTIIRGQTPHFDYIANEVARGI
                     SHAGLESGVPVVFGIVTADTVDQAIDRAGVKLGNKGFEAGMTAVELANLYKEAFEA"
     gene            1190..1648
                     /gene="nusB"
                     /locus_tag="VGD38_14935"
     CDS             1190..1648
                     /gene="nusB"
                     /locus_tag="VGD38_14935"
                     /inference="COORDINATES: protein motif:HMM:TIGR01951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEY0729372.1"
                     /translation="MGSRRKARECALQMLFAADVAEMPPDDVVRSYWAELGESDLDET
                     ARGFATRLAKGTLSNLELLDDRIRSRAEHWRISRMAVVDRNILRLAVYEFLYEPTPRT
                     VAINEALEIARRFSTYEATQFINGILDAIKRDLDEQQPQQNVRTEPEDSD"
BASE COUNT          443 a          511 c          484 g          383 t
ORIGIN      
        1 ctgcgtagtt ctgccgatag ccattttcgg tagcaaatag ccattttcgt atactctttc
       61 ccgctccgct cctcccttgc gagtgctaca atcactcgca agggggagta ttgaatgagc
      121 gaagacgtta caaacaaact actacaaagc accgacgaaa agctgacgct tgttctgacg
      181 ctcgtgcagt cgctgactgt gcgagataac aacatcgact tgcgactcaa tagcattgat
      241 tcgcgacttg acaagctgga ttcgcgactt gagaccatcg attcacgttt ggttcacgtt
      301 gagcagacgg tgagcgacat gcggcctgtt ttgcagaagc tcagtactga tgttggccag
      361 ttacaagagg gccaacgtcg gttagaagaa ggccagctac agttacagac gaccgtacta
      421 caactacagg acggccaaca acagttacaa gagggtcaag agattatagc tagcgaggtt
      481 cataccttta gacgcgattt cagccaccgg ttcttggtcc taagcggcgc aacgaatgcc
      541 gaaatacgcg atctgaagga acgcgtgacc cgcgtggaac aaaacctcaa cccgccgaaa
      601 cgtggaactt gatgcgcctc agagcatctc ctatactgcg aaacgtagta actattcagc
      661 tcgcgaggtc gcaacggttg cagccgacag ttcacgaagg acgactcaac gctgaaggct
      721 ttcgcttcgc catcgtggca agccgctgga atgaatttat taccggccgg ctcgtcgaag
      781 gctcgatgga cgccctcgag cgcctcggag ccaaagaagg tctcgtcacc gtgtatcgcg
      841 tgccgggcgc cttcgagata ccgttactcg ctttgcgact ggcacagtcg cgacggtttg
      901 atgcaattat ttgcctgggc acgatcatac gtggacaaac gccgcacttc gattacatag
      961 ccaatgaagt cgctcgcggc atctcacacg caggtctgga atcaggagtg ccagtggtct
     1021 ttggtatcgt caccgccgac acggtcgatc aggcgatcga ccgcgccggt gtcaaactcg
     1081 gtaacaaggg ttttgaagcc ggcatgacgg ccgtagagct ggctaattta tacaaggaag
     1141 cgtttgaagc ttaatatcca aggtcaatat tagtaagtgg taatttgtta tgggttcgcg
     1201 acgtaaggca cgtgaatgtg ccttgcaaat gctctttgcg gctgacgttg ccgaaatgcc
     1261 tccggacgat gtggtccgta gctattgggc tgaactggga gaatccgacc tcgacgagac
     1321 ggcccgcgga ttcgccacgc gtttggccaa gggaactctt tccaacctgg aactgctcga
     1381 cgatcgcatt cgttcgcgcg ccgaacactg gcgcatctcg cgcatggccg tcgtcgatcg
     1441 caacattctt cgtctcgctg tttacgagtt tctctacgaa cccacgcccc gcaccgtcgc
     1501 catcaacgaa gcactggaaa tcgcgcgccg cttctcgact tacgaagcga cccagttcat
     1561 caacggtatt ctcgacgcta taaaacgcga cctcgacgaa cagcagcctc aacagaacgt
     1621 tcgcaccgaa ccggaagata gcgattaacg cccgatcacg tggacctaca agatcgagtc
     1681 gaacacatca ccgcgacaat aggcgatctg cgcaacgcgg caacagacgg gcgtaagtcg
     1741 cggcaattaa tcgacgcgct cttccgcgcg gttcacagtt tcaaagcggc ggcctcggcc
     1801 gaaggacgcg acgacctcag c
//
LOCUS       DASWTX010000983         1805 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_207009, whole genome shotgun sequence.
ACCESSION   DASWTX010000983 DASWTX010000000
VERSION     DASWTX010000983.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1805)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1805)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1805
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207009"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..188
                     /locus_tag="VGD38_14940"
     CDS             <1..188
                     /locus_tag="VGD38_14940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729373.1"
                     /translation="QVYFVVALVILNLKGAHSDGDQESLKIHQTGFVQEVSGSCHVAA
                     SAETDEAGRTFKARVEG"
     gene            148..342
                     /locus_tag="VGD38_14945"
     CDS             148..342
                     /locus_tag="VGD38_14945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729374.1"
                     /translation="MKPAELSKLALKGDICFGGDTCIAATSVHAEADLVVQADLQESL
                     DKAGLSRRADPCFGGDTCIV"
     gene            378..1727
                     /locus_tag="VGD38_14950"
     CDS             378..1727
                     /locus_tag="VGD38_14950"
                     /inference="COORDINATES: protein motif:HMM:NF024747.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY0729375.1"
                     /translation="MAWKASHYTHLIPLSDGNGVVYNGRSGALVKLSPGAFERCGTIM
                     KSSAPGKPLSASFEKEDLFAHLIAGNFVVEADFDELAFIEEQYQRERQHSQFLLTILP
                     TFGCNLGCNYCFVGKKKGAMDHEKQEQIIKFVTERFATHKFPSMAVDWFGGEPLLALG
                     AIEHLSEAFLDLCRRYDTPYSAQIITNGTMISDRAIEVMHKAQIDRLQITLDGLREIH
                     DQRRPSKLRVISSFEQTILGLGKVVGQFVIRLRINVDKHNLAEAWKLLDFFAEQGWLE
                     RDKTFYPYLARISPFTDACASVATEVCSVDEFQEMNIQWMKRLHSYGVPVAFQGLYQF
                     PEPKLYNCGAIGTNGFIFNPNGEIHKCGLAVDDSSEAIGQLGEELDSAHPNAVKWREW
                     SPLDNPVCRGCEFLPSCLGGCPRNQMQMREVQKKENCQYYQQHENRILATHLELAQM"
BASE COUNT          390 a          459 c          540 g          416 t
ORIGIN      
        1 tacaggttta ctttgtggtc gccctcgtga ttctcaacct caaaggagct cattccgatg
       61 gcgaccaaga aagcctcaaa atccaccaaa cgggcttcgt ccaagaagtc tcaggaagtt
      121 gtcatgtggc tgcgtctgcc gaaaccgatg aagccggcag aactttcaaa gctcgcgttg
      181 aagggtgaca tctgcttcgg cggcgacacc tgcattgccg cgaccagcgt gcatgcggaa
      241 gctgatctcg tcgtgcaggc tgatttgcag gagtcgctcg acaaagccgg tctctcgcgt
      301 cgcgccgatc cgtgtttcgg cggcgatacc tgcatcgttt aagtttgctc aacaatttgg
      361 ctttggaggg cacgctcatg gcgtggaaag catcgcacta cacccacctc attcctctgt
      421 ctgacggcaa cggcgtggtt tacaacggcc gcagtggagc actggtgaag ttgtcgccgg
      481 gcgcgtttga gcgttgcggc acgatcatga agagcagtgc gcctggtaaa ccgttgagcg
      541 cttcgtttga gaaggaagat ctgtttgccc atctcatcgc ggggaatttt gttgtcgaag
      601 cagacttcga cgaactcgcg tttatcgaag aacagtacca gcgcgagcgc cagcactcgc
      661 agttcctgct cacgatcctg ccgacgtttg gttgcaatct cggttgcaac tactgctttg
      721 tcggcaagaa aaaaggcgcg atggaccatg agaagcagga gcagatcatc aagtttgtga
      781 ctgaacgttt tgcgacgcac aagtttccga gcatggcggt tgactggttt ggcggcgagc
      841 cgttgctggc tttgggcgcg atcgagcact tgtcggaagc gtttctcgat ctttgccgtc
      901 gttacgacac gccttatagc gcgcaaatca tcacaaacgg cacgatgatc tccgaccgcg
      961 caatcgaggt gatgcacaag gcgcagatcg atcgtttgca gatcacgctc gatgggctgc
     1021 gcgagattca cgatcagcgc cggccgagta agctgcgtgt gatctcgtcg tttgaacaga
     1081 cgattctggg tctcgggaaa gtcgtcgggc agtttgtgat tcggctgcga atcaatgtcg
     1141 acaaacacaa tctcgcggaa gcgtggaagc tgctggattt cttcgctgag cagggttggt
     1201 tggaacgaga caagactttc tatccgtatc tcgcgcgtat ttcgccgttt accgatgcgt
     1261 gtgcttcggt cgccacggag gtttgctcgg ttgatgagtt tcaggagatg aacatccagt
     1321 ggatgaagcg gctgcacagc tacggggtgc cggtcgcttt tcaggggctg tatcagtttc
     1381 ccgaaccgaa gctctacaac tgcggcgcga ttggtacgaa cgggttcatc ttcaatccca
     1441 acggcgagat tcataagtgc ggtctggcgg tggacgattc aagtgaagcg attggccaac
     1501 tcggcgaaga gctcgacagt gcgcatccga acgcggtgaa gtggcgcgag tggagcccgc
     1561 tggataatcc tgtttgccgc ggttgtgagt tcctgccttc gtgtcttggt ggctgtccgc
     1621 gcaatcagat gcagatgcgc gaagtgcaga agaaagagaa ctgccagtat taccaacagc
     1681 acgagaaccg cattctcgcg acgcaccttg aattggcaca gatgtaaatc gagcggcacg
     1741 ggcgtattta gcaggcgttt ggaaaacggt ccacgcggtt gttatagtga cacgcgaatg
     1801 aaatc
//
LOCUS       DASWTX010000984         2163 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_122250, whole genome shotgun sequence.
ACCESSION   DASWTX010000984 DASWTX010000000
VERSION     DASWTX010000984.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122250"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..812
                     /locus_tag="VGD38_14955"
     CDS             <1..812
                     /locus_tag="VGD38_14955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729376.1"
                     /translation="DRKSMPALEFYVMSKGDIAQQREREREEWRKRGLAGTISAVNAD
                     TKEIMVDSRSAEGPKPVVIATTAETKFRRYAPDSVRFSDAKPSAIGDLKVGDQLRALG
                     TKSADGAKFSADEIVTGSFQTIGGAIIEVNAEKQEIKINDVQSKQAVTIVVSKDSTMR
                     RLTPELLSALMPSPSGPKSETKSEAKSPTNAAPAAKGSGDLQEMFDQLPALSLAELKP
                     GESILISSTKGADPARVTAIAVVSGVGPLLQNSQGGRPAAVSLGAMSLGGP"
     gene            865..>2163
                     /locus_tag="VGD38_14960"
     CDS             865..>2163
                     /locus_tag="VGD38_14960"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY0729377.1"
                     /translation="MFCRTVLVVVCLLSVFASVSFAQQRTGSLRGQVTDELGGLVVGA
                     TVTLVAADGTQKNATTNNDGVYTFNGVAPGAYTLRVVSVGFTPYETTALAINAGPRAT
                     HDVRLVVTLEKQVITVTEEQTLNTDPANNADAVVLRGQDLDVLPDDPDALSAAVSAMA
                     GPSAGPSGGQIFIDGFTGGRMPPKESIREVRVNQNPFNAENSGIGFGNIEIFTKPGAD
                     KLRGSTFFNFNDESFNSRNPFAPSRAPFQVRYFGGSLSGPITKGKSSFFIDFQKREID
                     DNAIINATILNSNLVPGAFNLALITPQRFFSFSPRFDYQLNQGNTLVMRYSYTRTSAD
                     NVGASDFSLPERAFSRSNTFQTFQVTETAIISPTLMNETRFQYQRNRGQQDGNNAIPT
                     IVVQEAFIAGGSQIGLAHNDEDRWELQNYSTWTKGRHILRF"
BASE COUNT          480 a          623 c          643 g          417 t
ORIGIN      
        1 aagatcgcaa gagcatgccg gcgctcgagt tttacgtgat gagcaaaggc gacatcgcgc
       61 agcaacgcga acgcgagcgc gaggagtggc gcaagcgcgg gctggccgga acgatcagcg
      121 ccgtcaacgc agacacgaaa gagatcatgg tcgattcgcg cagtgcggaa ggcccgaagc
      181 cggtcgtgat cgcgactacg gccgagacaa agtttcggcg ttacgcgccc gattcggttc
      241 gtttcagcga cgccaagccg agcgcgatcg gcgatctgaa ggttggcgat caactgcgcg
      301 cgctcggaac gaagagtgcg gacggcgcta agtttagcgc cgatgagatc gtgacgggtt
      361 cgtttcaaac gatcggcggc gcgatcatcg aagtgaacgc cgaaaagcag gagatcaaga
      421 tcaacgacgt gcagagtaaa caggctgtga cgatcgtcgt gagtaaagac tcgacgatgc
      481 ggcggctcac gccggagctg ttgtctgcgt tgatgccgtc gccctccgga ccaaagtctg
      541 aaacaaagtc cgaagcaaag tcacctacca atgcagcgcc ggctgcgaaa ggcagcggcg
      601 atctgcagga gatgttcgat caactgcccg cgttgtcact ggcggagttg aaacccggcg
      661 agtcaatcct gatctcgagc acgaagggcg cggacccggc gcgtgtcacg gcgatcgcgg
      721 tcgttagtgg tgttggtccg ttgttgcaga acagtcaagg tggtcgtccg gccgcagtat
      781 cgttgggcgc gatgagctta ggggggccgt aggccccgat ttcacggatt ccaaaaactg
      841 attaacacag tagaaggtga actgatgttt tgcagaactg ttcttgtcgt agtttgtctg
      901 ttgagcgtgt ttgcttctgt gagcttcgcg caacagcgca cgggttcgtt gcgtggacag
      961 gttactgacg agctcggcgg gctcgtcgtc ggcgcgactg tgacgctcgt ggctgccgac
     1021 ggaacgcaaa agaacgcgac cacgaataac gatggtgttt acacgttcaa cggcgtcgcg
     1081 cccggcgcgt acacgttgcg cgttgtctcg gtgggtttca ctccttacga aacgaccgcg
     1141 ctcgcgatca acgccggacc acgcgcgact cacgacgtgc gcctcgtcgt gacactcgaa
     1201 aagcaggtga tcacagtcac cgaagaacaa acgctcaaca ccgatccggc aaacaacgcc
     1261 gatgctgttg tgttgcgcgg ccaggatctc gacgtgcttc ccgacgatcc ggacgcactc
     1321 tccgccgccg tgtctgcgat ggccggaccc tctgctggtc caagcggcgg gcagattttt
     1381 atcgacggct tcaccggtgg ccgtatgccg ccgaaagagt cgattcgcga agtgcgcgtc
     1441 aatcagaatc cgttcaacgc cgaaaacagc ggcatcggtt ttggaaacat cgagatcttc
     1501 accaagcccg gcgccgacaa actgcgcggc agcacgttct tcaatttcaa cgacgaaagc
     1561 tttaattcgc gaaacccgtt cgcgccgagc cgcgcgccgt ttcaggtgcg ctacttcggc
     1621 ggcagtctca gtggtccaat cacgaaaggc aagtcgtcgt tcttcatcga ttttcaaaaa
     1681 cgtgagattg acgacaacgc gatcatcaac gcgacgattt tgaactccaa tctcgtcccg
     1741 ggggctttca acctggcgct gataacgccg cagcgtttct tctcgttcag tccgcgcttt
     1801 gattaccagc tcaaccaggg caacactctc gtgatgcgtt actcctacac gcgcacgagt
     1861 gcagacaacg tcggcgcttc cgacttctcg ctgcccgagc gcgcgttcag ccggtcaaat
     1921 acattccaga cgtttcaggt caccgaaaca gcgattatca gcccgacgct gatgaacgaa
     1981 acacgctttc agtaccagcg aaaccgtgga cagcaggacg gcaacaacgc gattcccaca
     2041 atcgtcgtgc aggaagcttt catcgcgggc ggttcgcaga tcggactcgc gcacaacgac
     2101 gaagatcgct gggagttgca gaactactcg acctggacca agggccgtca cattcttcgt
     2161 ttc
//
LOCUS       DASWTX010000985         5000 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_366728, whole genome shotgun sequence.
ACCESSION   DASWTX010000985 DASWTX010000000
VERSION     DASWTX010000985.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5000
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_366728"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..226
                     /locus_tag="VGD38_14965"
     CDS             <1..226
                     /locus_tag="VGD38_14965"
                     /inference="COORDINATES: protein motif:HMM:NF015995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycine betaine ABC transporter
                     substrate-binding protein"
                     /protein_id="HEY0729378.1"
                     /translation="DLFQLADDRRYFPPYEAVYLVRQDTLQRVPALQEVLAKLANAIS
                     TEEMRRLNYEIDGNRRDPKEVVREWIGGKQ"
     gene            223..498
                     /locus_tag="VGD38_14970"
     CDS             223..498
                     /locus_tag="VGD38_14970"
                     /inference="COORDINATES: protein motif:HMM:NF016141.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HEY0729379.1"
                     /translation="MTLLDVLVLLLVAGICGALGQAIAGYSRGGCLVSIALGFVGALL
                     GMWIARLMGLPELFPVRIGGTSFPIIWSIIGSALFVALLTLITRSRA"
     gene            complement(540..701)
                     /locus_tag="VGD38_14975"
     CDS             complement(540..701)
                     /locus_tag="VGD38_14975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729380.1"
                     /translation="MSDIKNFSLTFAADPPDNGGGTKKTSTSSSDSTTTTDKPMPVDP
                     PDNGGGTGG"
     gene            complement(732..3719)
                     /locus_tag="VGD38_14980"
     CDS             complement(732..3719)
                     /locus_tag="VGD38_14980"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0729381.1"
                     /translation="MIGQTVSHYRILEKLGEGGMGVVYLAEDQHLARRVAIKFLTSTD
                     HHYRARFIREARAVSALTHRNIAIVHDYGESSTGQPFLVMEFVKGKSLSQLLEEGLTL
                     RRSVEIVSSIAEALAEAHHHGIVHRDIKPSNILVNERGVVKVLDFGLVKHLFEPPSSE
                     VDLDAQTIYSTQTRSDVIVGTPLYLSPEQATGKQVDGRSDIFALGALLYECLTGRSAF
                     AGASVLEIGAQIIHVTPPPPSHLNPQITPALDRITMKALQKKVEDRYQSADDMMKDLQ
                     AAVVGLGGNGVPVSSKGAKPTAGDMNRATSALATLTLQLRRQRFSLASFILTIVASGL
                     AIWAIIHFWPRNYYQPSPAAKQWYDIGTDALRNGAFHQASKALQQAIQIDGNYALARA
                     RLAQAWTELDYIDNAKDELLAIQSLTRNGMAITEKDALYLDAITAMATRDFREAVKAY
                     SSIAEMSPNESQVYVDLGYAYEYDGKPDQALQSYTKAISLNDGQYATAYLRAGVVYYR
                     KQDNDNALKMYERAEQLYRAASNNEGVNEVMRRRGVLYRRVGRYDEAQAQFQQCLDAA
                     RAMGLEAQQISALIDLSFLGSARGRAAEAESYAQQAVTIAQQKKLENLAASGLLELGN
                     SYSSRQDYEKAEHYFNQAIQLARSNKGRFGEALGMMNLAGVYIYTLRVDQGLQLAQQA
                     LNFFQQGNYPASVTQCLTQMIRGYRRKGDYEGALKAANQKIDLARNDGSQPEIANAYS
                     ELAGVLVEREDLPAAQKQYDDAFNIYETVKNPLRITFNKVNRGNVLWRLGHNQQAEAL
                     LDDVWKTISESKNEYKQLVPTVLLHRAQIRMSQRNYAEAIALSKEAVTEAGVQNPEIA
                     IEARSVLGLATAMSGSGQEGLKFCDEAINLASTKGDFLLQSRALLYKAEAALLTNDPQ
                     TALNLATDAQTRFASGQQYESEWRAWLIASRASDKLGDKSKAQEQFGNAMNVRARLEQ
                     QWGPDAFKQYSSRPDIQALYKQG"
     gene            complement(3782..4273)
                     /gene="purE"
                     /locus_tag="VGD38_14985"
     CDS             complement(3782..4273)
                     /gene="purE"
                     /locus_tag="VGD38_14985"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR01162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEY0729382.1"
                     /translation="MSTEKPLVAVIMGSQSDWDTMKHAGEQLAQFGVAHESRVISAHR
                     SPSLAAEFGSTAEERGLEVIIAAAGGAAHLAGVLAAHTTLPVLGVPMKSDALNGLDSL
                     LATVQMPGGIPVGTLAIGKPGAINAALFAVAILANSRPELRQKLHEFRESQEAKIRAT
                     KLT"
     gene            complement(4279..>5000)
                     /locus_tag="VGD38_14990"
     CDS             complement(4279..>5000)
                     /locus_tag="VGD38_14990"
                     /inference="COORDINATES: protein motif:HMM:NF037786.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HEY0729383.1"
                     /translation="GLAGSANIGEHVSMFEAIHGSAPRRAGQNLANPSGLLLGAVMML
                     VHVGLTEHAERVHNAWLRTIEEGIHTYDIYDESVSKQKVGTKEFAEAVVQRLGQTPQI
                     LKARSYKKADESVSQQIAAASKPAPHKELVGVDVFLDWTKGTANELGDGLSRLNGEGL
                     KLTMISNRGVKVWPGGHTETFCSDHWRCRFLPEADGAQVSHAQVVSLLGRVSGEGYDF
                     IKTEGLYTFDGQRGYSLDQGE"
BASE COUNT          928 a         1454 c         1466 g         1152 t
ORIGIN      
        1 ggatctgttt caactcgccg acgatcgccg ttactttccg ccgtacgaag cggtttatct
       61 cgtgcggcag gacacactcc aacgtgtgcc ggcgttgcag gaagttctgg caaaactggc
      121 aaacgcgatc tcaactgaag agatgcgacg gctcaattac gagatagacg gcaaccggcg
      181 cgacccgaag gaagtcgtca gagaatggat cggaggtaaa caatgacgct gttggacgta
      241 cttgtacttt tgctggtagc gggaatttgt ggagcgctcg ggcaggctat cgccggctat
      301 tcgagagggg gatgtctcgt gtcgatagcg ctcggttttg tcggcgcgct cctggggatg
      361 tggatcgcgc gcctgatggg cctgcccgag ctgttcccgg tccgcattgg cggcaccagt
      421 tttccgatca tctggtcgat tatcggttcc gcgctgttcg tggccctgct cacactcata
      481 acacgtagcc gggcgtgagg gccacgaatt acacggattg tttgcttaag cgacagcctt
      541 tagccgccgg taccaccgcc gttatcagga ggatcgacgg gcattggctt gtctgtggtc
      601 gtggtggaat ccgaactcga ggtcgaggtt ttcttagtac ccccaccgtt gtcgggtgga
      661 tctgctgcga aggttagcga gaaattctta atgtcggaca tggttctgag ctccttactt
      721 ctttgggagt attacccctg cttgtaaagg gcctgaatat caggccgtga actatattgc
      781 ttgaacgcgt cgggtcccca ctgttgttcc agcctggccc gaacgttcat cgcgtttccg
      841 aactgttcct gggccttact cttgtcaccc aacttatcgc tggcccgtga ggcaatcaac
      901 caggctcgcc attccgattc gtactgctgc ccactagcaa atctggtttg ggcatcggtg
      961 gcgaggttta gggcggtttg agggtcgttg gtgagtagcg cagcctccgc cttgtaaagt
     1021 aacgcgcgag attgcagcaa aaagtctccc ttcgtcgatg ctaaatttat cgcttcgtca
     1081 caaaatttaa gtccttcttg cccgctgccc gacatcgccg ttgccaaacc gaggaccgaa
     1141 cgcgcctcga tggcgatctc gggattctgt acgccggctt cggtaacagc ctctttgctg
     1201 agggcgatgg cctcggcgta gttgcgctgg ctcatgcgaa tttgagcccg gtgaagcagt
     1261 accgtcggca cgagctgttt gtattcgttc ttcgactcgc tgattgtctt ccaaacgtcg
     1321 tcgagtaacg cctctgcctg ttgattatga cccaggcgcc acaaaacgtt tccccggttc
     1381 actttgttga acgttatgcg cagcgggttt ttaacagtct cgtagatgtt gaaggcgtcg
     1441 tcgtactgtt tttgggccgc cggcaagtct tcgcgttcga cgagaacgcc cgcgagctcg
     1501 ctgtaagcgt tggcgatttc cggttgtgag ccgtcgttac gagcgagatc gattttctgg
     1561 tttgcggctt tcaatgcgcc ttcataatca cccttccggc ggtagccacg aatcatttgg
     1621 gtcaaacact gagtgacgct agccgggtag ttcccctgtt ggaaaaaatt cagcgcctgt
     1681 tgtgccagtt gcaaaccctg atcgacgcgc agcgtgtaga tgtaaacgcc ggcgaggttc
     1741 atcatgccga gtgcttcgcc gaagcggcct ttgttcgagc gggccaactg aatcgcctgg
     1801 ttgaagtagt gttcggcttt ttcgtaatcc tgccgggacg agtaggaatt gccgagctcg
     1861 aggagtccgg acgcggcaag gttttccagc ttcttctgct gtgcgatcgt gaccgcctgc
     1921 tgggcgtagc tttcggcctc agccgcccgt ccgcgcgcag accccagaaa actcaaatcg
     1981 attagcgcgc tgatctgttg cgcttcgaga cccattgcgc gcgcggcgtc gagacactgt
     2041 tgaaactgcg cctgcgcttc gtcgtaacgg ccaacgcggc gatagagcac gccacggcgc
     2101 cgcatcacct cgttcacgcc ctcgttgttg ctggcggcgc gatacaactg ctccgccctt
     2161 tcatacattt taagcgcgtt gtcgttgtcc tgtttgcggt aatagacgac tcccgcgcgc
     2221 agataggccg tcgcgtattg gccgtcgttc agcgagattg ctttggtgta actttgcagc
     2281 gcctgatcgg gtttgccgtc gtactcgtag gcgtagccga ggtcaacgta aacctggctt
     2341 tcgtttggcg acatttctgc aatggaactg tacgccttca cggcttcacg aaaatcacgc
     2401 gtggccattg ccgtgatcgc gtcgagataa agcgcgtctt tttcagtgat cgccatgccg
     2461 ttgcgcgtca ggctctggat cgcgagcagt tcgtctttgg cgttgtcgat gtagtcgagt
     2521 tcggtccacg cctgtgcgag acgcgcgcga gcgagcgcgt agttgccgtc gatctggatt
     2581 gcctgctgga gcgccttgct ggcctggtga aacgcgccgt tgcgcaaggc gtcggtgccg
     2641 atgtcgtacc actgtttagc tgcgggcgac ggttggtaat aattgcgggg ccagaaatga
     2701 atgattgccc agatcgcgag gccgctcgcc acgatcgtca ggatgaatga ggcgagtgaa
     2761 aagcgctgcc gtcgaagttg cagtgtgagc gttgcgagcg cgctggtggc gcggttcatg
     2821 tcgcccgcgg tgggtttcgc gcccttgctg ctcacgggca cgccgtttcc gccgaggccc
     2881 acgaccgccg cctgcaaatc cttcatcatg tcgtccgccg actggtaccg gtcctcgacc
     2941 tttttttgca gcgctttcat cgtgatgcga tccagcgcgg gcgtgatttg cggattgagg
     3001 tgcgacggcg gaggcggtgt gacgtgaatg atctgcgcgc cgatctccag cacgctcgcg
     3061 ccggcaaatg ccgaacgtcc ggtcaaacac tcgtacaaca acgcgccgag cgcgaagatg
     3121 tcgctgcggc cgtcgacctg tttgccggtt gcttgttcgg gtgacaggta aagcggcgtg
     3181 ccgacgataa cgtcgctgcg ggtttgcgtt gaatagatcg tttgcgcgtc gagatcgact
     3241 tcgctcgacg gcggttcaaa caggtgtttt accaggccga agtcgagcac tttcacgacg
     3301 ccgcgctcgt tgacgagaat gttcgagggc ttgatgtcgc ggtgaacgat gccgtgatgg
     3361 tgcgcttccg cgagcgcctc ggcgatcgac gacacgatct cgaccgagcg ccgcagcgtc
     3421 agaccttctt ccagcaactg gctcaacgac ttgcctttca caaactccat cacgaggaaa
     3481 ggctggcccg tcgagctctc gccgtagtcg tgaacgatcg cgatgtttcg gtgcgtgagc
     3541 gcggaaaccg cgcgcgcctc acgaatgaaa cgcgcgcggt aatggtgatc ggtcgaagtt
     3601 aaaaacttga tcgcgacgcg gcgggcaagg tgctggtcct cggccaggta gacgacgccc
     3661 atgccgcctt cgccaagttt ttcgagaatt cgataatggg aaaccgtctg accgatcatg
     3721 gcaagtcaca aagaggcacc cggactagac ggatatagag taaaccagct tactcaggat
     3781 ttcacgtaag tttagtggcc cggatctttg cctcttgaga ttcgcgaaat tcgtgcaatt
     3841 tttgcctcaa ctcgggccgg ctgttggcga gaatagcgac tgcgaacaaa gcggcgttga
     3901 tcgcgcccgg cttgccgatg gccagggttc cgacgggaat tccaccgggc atttggactg
     3961 tcgcgagcag cgagtcgaga ccgttcaggg cgtcgctttt catcggcacg ccgaggacag
     4021 gcaaggtcgt gtgggccgcg agcacgcccg cgaggtgcgc cgcgccgccg gccgcggcga
     4081 taatcacttc caaaccgcgt tcttcagccg ttgaaccaaa ctccgccgcc aacgatggcg
     4141 accggtgcgc cgagatcacg cggctttcgt gcgccacgcc gaactgcgcc aactgttcac
     4201 cggcgtgctt catcgtgtcc cagtcagact ggctacccat gattactgct acaagtggct
     4261 tttctgtgct catcttttct attcaccctg gtccagcgaa tacccgcgct gcccgtcgaa
     4321 agtgtaaagt ccttctgttt ttatgaaatc gtagccctca ccagaaaccc tgccgagcaa
     4381 cgaaactacc tgcgcgtgcg acacctgcgc gccatccgct tcaggcagga accggcagcg
     4441 ccagtggtcg gaacaaaaag tctccgtgtg accgcccggc caaactttca cgccgcgatt
     4501 gctgatcatc gtcaacttca aaccctcgcc gttcaaacgg ctcaaaccgt cgccgagctc
     4561 gttcgcagtg cccttggtcc aatcgagaaa aacgtcgacg ccgaccagct ctttgtgcgg
     4621 cgccggcttg ctcgcggcgg cgatctgctg tgaaaccgac tcatcagcct tcttgtaact
     4681 gcgcgccttc aggatttgcg gcgtctggcc caatcgctga accaccgctt cggcaaactc
     4741 cttcgtgcca accttttgct tgctgactga ctcgtcgtag atgtcgtacg tgtgaatgcc
     4801 ctcttcgatc gtgcgcagcc acgcgttgtg aacgcgttcc gcgtgctcag tcaaaccaac
     4861 gtgcacgagc atcatcaccg cgcccagcaa caaccccgac ggattcgcga gattctgtcc
     4921 ggcacgccgc ggcgccgaac cgtgaatcgc ttcgaacatc gagacgtgct cgccgatatt
     4981 cgccgaaccc gccaaaccaa
//
LOCUS       DASWTX010000986         3082 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_344369, whole genome shotgun sequence.
ACCESSION   DASWTX010000986 DASWTX010000000
VERSION     DASWTX010000986.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3082
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344369"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1994
                     /locus_tag="VGD38_14995"
     CDS             <1..1994
                     /locus_tag="VGD38_14995"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEY0729384.1"
                     /translation="GWEGVGLCSYLLIGYYFDRQEAANASRKAFITNRVGDFGFALAI
                     FGIIATFGSAQYTQVFEQAKGYPVETLGHWGILSWIALGLFIGACGKSAQLPLHVWLP
                     DAMAGPTPVSALIHAATMVTAGLYMVTRTNVIFQHSQTMLLVVALVGAATAIFAATIG
                     ITQNDIKKVLAYSTVSQLGFMFMACGVGAFVIGIFHVMTHAFFKALMFLGAGSVIHGM
                     HHEQDMRRMGGLKKYMPYTYWTFFAGWLAICGIIPFSGFWSKDEILWNAASTTQIPFG
                     WLIWLVGTIAAICTAFYMTRLMAMTFWGKERFLEGHAGGEADEAHASAYDKGRAAHDA
                     VLASAGDRPRHEPGEHVGPIHEDVEHHVATHGHALDHNGHKHGAHMPHESPVSMWAPL
                     VVLAVLATVGGFVGVGPAFNFITGSDHPGGKLNIVNWLNPIIWDPATGEFKTAEGGHE
                     SAPGTAGEHGSEPSGEAAHGTATETAHASSGFNLAHAVDNVLHNHLLTEWTFIVISLV
                     AAGIGMLLGGLFYVWRPQLPDIWAARLRPLYLASYNKDWVDEFYGLTVTRRTMDAARA
                     VFSFDSKLVDGIVNGLATVSRGFSRVVGGVDKYFVDGLVNTIAAFIARLMSPLLRAAQ
                     TGFTQNYALVMVLGLMIAVAAFFAKDIAAMLRGFFAAIM"
     gene            2006..>3082
                     /locus_tag="VGD38_15000"
     CDS             2006..>3082
                     /locus_tag="VGD38_15000"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEY0729385.1"
                     /translation="MDNYILSLITWFPAVGAVLILALMKKDQSSLIKRFATVWFGLDF
                     ILSLWLLKYNRGMGGMQFLEDYQWIPIIGARYQMGVDGVTVLLIVLTTLLGVIAALSS
                     WDYIQKREKEYYVLLLLLQTAVIGVFASMDMFLFYLFFEVSLVPMYFLIGIWGGENRL
                     YAAIKFFLYTLVGSVVMLLGVLKMYFLTQDTALVSQITQETVRALAGNDAATQLVSTT
                     LQHAAQNGTGNFNIIFMQAVGSVLPMGTLQILLFIAFALGFAIKVPMFPFHTWLPDAH
                     VEAPTAGSVILAGILLKLGTYGFYRFNLPMFPAASKDQTTWVTSFGTFGVRSVVVFLA
                     IVSIIYGALAAMYFVVKKDGDVKKL"
BASE COUNT          557 a          905 c          910 g          710 t
ORIGIN      
        1 tcgggtggga aggcgtgggt ctctgttcgt atctgttaat cggttactac ttcgatcgcc
       61 aggaagccgc gaacgcctca cgcaaagcgt tcatcacgaa ccgcgtcggc gacttcggtt
      121 tcgcactcgc aatcttcggc atcatcgcca cgttcggcag cgcgcaatac acacaagttt
      181 tcgaacaggc aaaaggttat ccggtcgaga cgctcggtca ctggggcatt ctttcgtgga
      241 tcgcgttggg attgttcatc ggcgcgtgcg gtaagtcggc ccagcttccg ttgcacgtct
      301 ggttgccgga cgcgatggct ggtccaacac cagtctccgc gctgattcac gccgcgacga
      361 tggtcaccgc cggtctctac atggtgaccc gcacgaacgt catcttccag cactcgcaaa
      421 cgatgctgct ggtcgtcgcg ctcgtcggcg cagcgaccgc catcttcgcc gcgaccatcg
      481 gcatcacgca gaacgacatt aagaaagtcc ttgcctactc gactgtatcc cagctcggtt
      541 tcatgttcat ggcctgcggc gtgggcgcgt ttgtgatcgg catctttcac gtgatgacgc
      601 acgcgttctt caaggcgctg atgttcctcg gcgccggcag cgtgattcac ggcatgcatc
      661 acgaacagga catgcgccgc atgggcggtt tgaagaagta catgccgtac acctactgga
      721 cgttcttcgc gggctggctc gcgatctgcg gcatcattcc gttcagcggt ttctggtcca
      781 aggacgagat tctttggaac gctgcgtcga ccacgcagat cccgttcggc tggctcatct
      841 ggctggtcgg aacaatcgcc gcgatctgta ccgcgtttta catgacgcgc ctgatggcga
      901 tgacgttctg gggcaaggag cggttcctcg aaggtcacgc cggcggcgaa gcagacgagg
      961 cgcatgcttc ggcgtacgac aaaggccgcg ccgcgcacga tgcggtgctt gcttcggcgg
     1021 gcgatcggcc acgtcacgaa cccggcgagc acgttggacc gattcacgaa gacgtcgagc
     1081 atcacgtcgc cacgcacgga cacgcgctgg atcacaatgg acacaagcat ggcgcgcaca
     1141 tgccgcacga gtcgccggtg tcgatgtggg cgccgttggt cgtgctcgca gtgctcgcga
     1201 cggtcggtgg ctttgtcggt gttggaccag ctttcaactt catcaccggc agcgatcatc
     1261 cgggcggcaa gctgaacatc gtcaactggc tcaacccgat catctgggac cctgcgactg
     1321 gtgagttcaa gactgctgaa ggcggccatg aatccgctcc cgggacagct ggtgaacacg
     1381 gatcggagcc gagtggtgaa gccgcacacg gaaccgctac cgagaccgca cacgcttcca
     1441 gtggattcaa cctggcccat gcggtcgaca acgttttgca caaccacctc ttgaccgagt
     1501 ggacttttat cgtcatttca ctggtcgccg caggcatcgg catgttgctc ggcggactgt
     1561 tctacgtctg gcgtccacag ttgcccgaca tctgggcggc gcgcctgcgc ccgctttatc
     1621 tcgcgagcta caacaaagac tgggtcgacg agttttacgg cttgaccgtc acgcggcgca
     1681 cgatggatgc cgcgcgcgct gtctttagct tcgactccaa actggtcgac ggcatcgtca
     1741 acggtctcgc gaccgtgagc cgcgggttca gccgcgtcgt cggcggtgtc gacaagtatt
     1801 tcgtcgacgg gctcgtcaac acgatcgccg ctttcattgc gcgcctgatg tcgcctttgc
     1861 ttcgcgccgc gcaaacgggt ttcacacaga attacgcact cgttatggtt ctcggactga
     1921 tgattgccgt ggcagcgttt ttcgcgaaag acatcgccgc catgctgcga ggtttcttcg
     1981 cggcgatcat gtgataacaa atcttatgga caactacatt ctttctctca tcacctggtt
     2041 tccggcggtc ggcgccgtcc tcattctggc gctcatgaag aaagaccagt cgagcctgat
     2101 caagcgcttc gccactgtct ggttcggact cgacttcatc ctgtcgttgt ggttgttgaa
     2161 atacaaccgc ggcatgggcg gcatgcagtt tctcgaagat taccagtgga taccgatcat
     2221 cggcgcgcgt taccagatgg gcgtcgacgg cgtcacggtg ctgctgatcg ttttgacgac
     2281 gctgctcggt gtgatcgcgg cgctctcgtc gtgggactac attcaaaagc gcgagaagga
     2341 atactacgtt ctgttgctgc tgttgcagac ggccgtgatc ggcgtgtttg cttcgatgga
     2401 catgtttctg ttctacctgt tctttgaagt gtctctcgtg ccgatgtact tcctgatcgg
     2461 catctggggc ggtgagaacc gtttgtacgc ggcgatcaag ttctttcttt atacgctcgt
     2521 cggttcggtg gtgatgttgc tcggcgtttt gaagatgtac ttcttgacgc aggacacggc
     2581 actggtgagc cagataaccc aggagaccgt gcgggcgctc gccggaaacg atgcggccac
     2641 acaactcgtg tcgaccactc tccagcatgc ggcacaaaac ggcaccggca acttcaacat
     2701 catcttcatg caggcggtcg gatctgtgtt gccgatgggc acgcttcaga tcctgttgtt
     2761 catcgctttc gctttgggtt tcgcgatcaa ggtgccgatg tttccgtttc acacgtggct
     2821 gccggacgcg cacgtcgaag cgcccacggc cggctcggtg atcctcgcgg gcattttgct
     2881 gaaactcgga acttacggct tctatcgttt caacctgccg atgtttcccg cggcgtcgaa
     2941 agatcaaacc acgtgggtca cgagctttgg aacgtttggc gtgcgaagtg tcgtggtgtt
     3001 tctggcgatc gtcagcatca tctacggcgc cctcgccgcg atgtacttcg tcgtaaagaa
     3061 agacggcgac gtgaagaagc tc
//
LOCUS       DASWTX010000987         2586 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_103579, whole genome shotgun sequence.
ACCESSION   DASWTX010000987 DASWTX010000000
VERSION     DASWTX010000987.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2586)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2586)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2586
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103579"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..698)
                     /locus_tag="VGD38_15005"
     CDS             complement(<1..698)
                     /locus_tag="VGD38_15005"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY0729386.1"
                     /translation="MRVLRLIFLLLSLSFVAQAQDTPADNWAQFRGNHSLTGVSLSNV
                     PSSLKPLWTYEAGESIESSAAIVGGTVFVGSHKGELVALSLNNGSVYWKFSTGNPIGE
                     SSPAYSNGTVFIGDLGGWINALNASNGQKLWAFKTNGEIKSSPVVVGDSVLIGSYDEH
                     LYSLNARTGAFRWKFKTNGPVHATPGISDGLAFIAGCDEMFRAIRISDGKEVFSVSSG
                     AYTGASPALRGGSA"
     gene            complement(686..1831)
                     /locus_tag="VGD38_15010"
     CDS             complement(686..1831)
                     /locus_tag="VGD38_15010"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0030554 - adenyl nucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEY0729387.1"
                     /translation="MKNFDFQPRTRLIFGAGAISQLGDVAKELGFRRTLLVADHGLVA
                     SGHVDEAVTPLQQAGIEVIRYHDFEVNPDTRMVEAGTAFVATQQIDSIIGLGGGSSMD
                     CAKGINFLLTNGGRMSDYRGYGKAMKPMLPMMAIPTTAGTGSEAQSYALISDAETHVK
                     MACGDPKAAFRVALLDPALTLSQPRSITATSGFDAIAHAVETYVTTKRTPMSEIFSRE
                     AWALLEGNYERVLTHPDDLEARGAMQLGAFYAGVAIENSMLGATHACANPLTARYGTA
                     HGAAIAMLLPSVVRWNERAVGDRYETLLNLSSASGNNSNSTPTEALARRLEALIAAGR
                     LGGDLRTFVEKSDLPELAAEAAEQWTGTFNPRPFNKEGAMEVYSCAY"
     gene            complement(1906..>2586)
                     /locus_tag="VGD38_15015"
     CDS             complement(1906..>2586)
                     /locus_tag="VGD38_15015"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY0729388.1"
                     /translation="WASPTVGTIGGVVQVVHGQGDGWIRGYEATTGKKLWEFDTNPKD
                     SVWPKTRNEVISTAVIYQDRVYISNGQDPEHGEGVGHMYCIDGTKRGDITKTGMVWHY
                     DKIRRSISTPAIKDGILYQADFSGFLHALDAKTGQPLWVHDVFAAVWGSPMLIDGKIY
                     LGDEDGDIVILQEGKVKKVLAELNMGSSVYSTPVPANGVLYISNRNQLYALSETAGAK
                     PASATSRN"
BASE COUNT          529 a          801 c          719 g          537 t
ORIGIN      
        1 aacgcggaac cgccgcgcaa tgccggcgac gcgccggtgt aagcgcccga agaaacactg
       61 aacacttcct tgccgtcgga gatgcgaatc gcgcgaaaca tctcgtcgca gccggcgatg
      121 aacgcgaggc cgtctgagat accgggcgtt gcgtgaactg gtccattcgt tttgaacttc
      181 caccggaacg cgcccgtgcg cgcgttgaga gagtaaaggt gttcgtcgta agaaccgatc
      241 aagacgctat cgccgacgac gacgggtgac gatttgatct cgccgtttgt tttgaacgcc
      301 caaagctttt gcccgttgct cgcgttcagc gcgttgatcc agccgccgag atcgccgatg
      361 aaaaccgtgc cgttgctgta cgccggtgac gactcaccga tcggattgcc ggtcgaaaac
      421 ttccagtaca cggatccgtt attgagactg agcgcgacga gttcgccctt gtgcgaaccg
      481 acgaacaccg tgccgccgac aatcgccgcc gatgattcga tcgactcacc cgcttcgtaa
      541 gtccacagtg gtttcagcga cgacggaaca ttcgaaagcg agacgccggt caaagaatga
      601 ttgccacgaa actgcgccca gttatccgca ggcgtgtcct gcgcctgggc cacaaacgaa
      661 agggataaga gcagaaaaat aagtctcagt acgcgcatga ataaacctcc attgcgcctt
      721 ctttgttgaa gggccgtgga ttgaaagtcc cagtccattg ttcagccgct tcggcagcga
      781 gttccggaag atcgctcttt tctacaaatg ttcttaaatc ccctcctaaa cggcctgccg
      841 ctatgagcgc ttcgagccgc ctggcgagtg cttccgtcgg agtggaattg gagttattgc
      901 ccgaggcaga agacagattc agtagcgttt cgtaacgatc gccgacagct ctttcgttcc
      961 aacgcacaac cgaaggcaac aacatcgcga tcgccgcgcc gtgcgcggtg ccgtaacgcg
     1021 ccgtcaacgg attcgcacaa gcgtgcgtcg cgcccagcat cgagttttca atcgccacac
     1081 ccgcgtagaa cgcacccaac tgcatcgcac cgcgcgcttc gagatcgtcc gggtgcgtca
     1141 acacgcgctc gtagtttcct tcgagcaaag cccacgcctc gcgcgagaag atttccgaca
     1201 tgggcgtccg ctttgtggtg acgtacgttt ccaccgcgtg cgcgatcgcg tcgaagcccg
     1261 acgtcgcagt gatgctgcgc ggttgcgaca acgtcaacgc cggatccagc agcgcaacgc
     1321 gaaacgccgc tttcggatcg ccgcaagcca tcttgacgtg cgtttcggcg tcggagatca
     1381 acgcataact ttgcgcctca ctcccggtcc ccgcagtcgt cggaatcgcc atcatcggca
     1441 acatcggttt catcgccttg ccgtaaccgc gatagtcact catgcggccg ccattcgtca
     1501 gcagaaagtt gatgccttta gcgcaatcca tcgaactgcc gccgccgagt ccgatgattg
     1561 aatcaatctg ctgcgtcgca acgaaagccg ttccggcttc aaccatccgt gtgtcgggat
     1621 tgacttcgaa gtcgtgataa cgaattactt caatgcccgc ttgttgtagc ggcgtgacgg
     1681 cttcgtcgac gtgtccggac gcaacgagac cgtgatccgc gaccagcaac gtgcgccgga
     1741 agccgagctc cttcgccacg tcgccgagtt gactgatcgc gcccgcgccg aagatgagac
     1801 gcgtccgcgg ctgaaaatca aagttcttca tctattaccc acaaagaagc acaagctgca
     1861 caaaacgagt cttgtgcctc ttgtgccctt tggtgtcctc attccctagt ttcgcgaagt
     1921 cgccgaagcc ggtttcgcgc ccgccgtttc gctcaacgcg taaagctgat tacgattcga
     1981 aatgtacagc acgccgttgg ccggcacggg cgtcgagtag accgagctgc ccatgttgag
     2041 ctcggcaagc accttcttca ctttgccttc ctgcaggatc acgatgtcgc cgtcttcatc
     2101 gccgagatag atcttgccgt cgatcagcat cggcgaaccc cagacagccg cgaacacatc
     2161 gtggacccac aagggctgtc cggtcttcgc gtcgagcgcg tgcaggaagc cgctgaagtc
     2221 ggcctgataa aggatgccgt ccttgattgc cggcgtggag atcgagcggc gaatcttgtc
     2281 gtagtgccag accatgccgg tcttggtgat gtcgccgcgc ttcgtgccgt cgatgcagta
     2341 catgtggccg acaccttcgc cgtgctcggg gtcctggccg ttcgagatgt aaacgcgatc
     2401 ctggtagatg acggcggtgc tgatcacctc gttgcgcgtc ttgggccaaa cggaatcttt
     2461 cgggtttgta tcgaactccc agagcttctt gcccgtggtt gcttcgtaac cgcgaatcca
     2521 accgtcgcct tgtccatgga ccacctggac cacgccgccg attgttccga ccgtcggcga
     2581 agccca
//
LOCUS       DASWTX010000988         1732 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_298425, whole genome shotgun sequence.
ACCESSION   DASWTX010000988 DASWTX010000000
VERSION     DASWTX010000988.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298425"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1248)
                     /locus_tag="VGD38_15020"
     CDS             complement(<1..1248)
                     /locus_tag="VGD38_15020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729389.1"
                     /translation="MTLAPAVKGQDAGVTKKVLVLYWDTKDFAGNISFEQGFQAGMRS
                     EPTNRWELYSEYLDSTRFPGEDQAELLRDYLRQKYAKQHIDAVVVTPDPALEFLLRYR
                     SELFSNSPIVFVAVRRPPPEVLAAGPGLTGIIRANTYRKTIDLALKLQPETQELYVIS
                     GTPERDKRFEITAREELAGYGKRVRISYLTDLPVNDLVNRVKELPPRSIILYVWQRSS
                     LESEKGLQTVQILEQIRHNASVPIYGMGSRNVGYGIVGGYVQDSERNGLEAAELVRQI
                     FNGTRASNIPVDSASSVPTFDWRELKRFGINESNLPKGSVVLFKEFTVWEQYRWRIIL
                     IGALIVLETLIITALLLERRRRRRAREALDQLNSELEMRIEARTNALNAKTRELESFA
                     YSVAHDLKAPLRGIDGYTGLLLED"
     gene            complement(1341..>1732)
                     /locus_tag="VGD38_15025"
     CDS             complement(1341..>1732)
                     /locus_tag="VGD38_15025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729390.1"
                     /translation="VTTNSTVNGVANTLRPDVDGPVQVFGEVDGWFDTTAFAAVPRLG
                     NLGRNVIVGPTFNNTDVSLIKNTTIGEDLRLQFRAEVFDVFNHANFGRPGNTVGSPLF
                     GRMTSTRFPTGESGSSRQIQFALKVGF"
BASE COUNT          384 a          486 c          466 g          396 t
ORIGIN      
        1 gtcttcgagc aggaggccgg tgtaaccgtc gattccgcgg agcggcgcct ttagatcgtg
       61 agcgacagag taagcaaagc tctccagttc gcgggtcttg gcgttcagag cgttagtgcg
      121 cgcttcgata cgcatttcca gttcggagtt gagttgatca agagcttctc tagctcgccg
      181 gcggcggcgg cgttcgagca acagggccgt gatgatgagg gtctctaaaa ctatcagggc
      241 gccgatcaaa ataatccgcc acctgtattg ctcccaaacc gtaaactctt tgaaaagaac
      301 gacactgcct ttcggcagat tgctctcgtt aattccaaag cgtttcaact cgcgccaatc
      361 aaatgtcgga actgatgaag cgctgtccac cggaatgttg gacgcgcgtg tgccgttgaa
      421 gatctggcgc acgagttccg cggcttccag accattgcgt tccgaatcct gcacgtagcc
      481 gccgacgatt ccgtagccaa cgttccggct gcccatgccg taaatcggga ccgacgcgtt
      541 gtgtctgatc tgctcgagga tttgtactgt ctgcagccct ttttcggatt caagcgatga
      601 gcgctgccaa acgtaaagaa tgatcgagcg cggcggcagt tctttcaccc ggtttactaa
      661 atcgttaacc gggaggtcgg tgagataact tatgcgaact ctttttccgt aaccggcaag
      721 ttcttcccga gcggttatct cgaatcgctt gtcgcgctca ggcgtcccgc taatcacata
      781 aagttcctga gtttccggtt gtagttttag tgccaaatca atagtctttc gatacgtgtt
      841 agcgcggatg attccggtaa ggccgggacc agccgcaagc acttccggag ggggccgcct
      901 gacggccaca aaaactatcg gactatttga aaagagttcg gagcgataac gcaggagaaa
      961 ttcgagcgcc ggatcgggcg tgacgactac cgcatcgatg tgttgcttcg catacttctg
     1021 gcgcaggtag tcgcgcagca actccgcctg atcttcgccg ggaaagcgag ttgaatcgag
     1081 gtattcacta tagagctccc atcgattggt tggctctgag cgcatgcccg cttgaaaacc
     1141 ctgctcgaaa ctgatgttgc cggcgaaatc cttggtgtcc cagtagagaa ccaggacctt
     1201 cttcgtcact ccggcatcct ggcccttcac ggcgggcgcc aacgtcatta cgaacaggca
     1261 caccaccact gggccaccga tctgtaacag gcgcctgaga gttcgcctgt gccatcccca
     1321 gctcatctta acaaccccaa ttagaaccca actttcaaag caaattgaat ctggcgcgac
     1381 gaaccactct ccccggtcgg aaaacgcgtg ctggtcattc gcccaaacag aggagagccg
     1441 accgtattgc caggtctacc aaagttagcg tgattaaaga cgtcaaagac ttcggcccga
     1501 aactgaagcc gcaggtcttc tccgatcgtt gtatttttga ttagcgagac gtcggtgttg
     1561 ttgaaagtcg gaccgacgat cacatttcgg cccaggtttc cgagccgcgg cactgccgca
     1621 aacgccgttg tgtcgaacca tccgtctact tcaccgaaca cctgaaccgg accgtcgacg
     1681 tcaggacgaa gcgtgtttgc gacgccgttg accgtgctgt ttgtggttac ga
//
LOCUS       DASWTX010000989         3163 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_168409, whole genome shotgun sequence.
ACCESSION   DASWTX010000989 DASWTX010000000
VERSION     DASWTX010000989.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3163
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168409"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..614)
                     /locus_tag="VGD38_15030"
     CDS             complement(<1..614)
                     /locus_tag="VGD38_15030"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY0729391.1"
                     /translation="MATAVEPTAPTPEANAEPKIGAYAWYALALLTFVYLLNFLDRTL
                     IYILFAPIKQEMSFSDFELGLLGTTSFVIFFTLLGIPFGRLADRSSRKNMIAAGLAVW
                     SLFSGLTGFATGFWPLFLCRVMVGVGEATLGPAALSLLSDYFPPRMRATVQAIYASGV
                     TLGAGLAFFFGGWIGQYFGWRAAFYFLGFPGLLVAVLVFLLREER"
     gene            complement(598..1002)
                     /locus_tag="VGD38_15035"
     CDS             complement(598..1002)
                     /locus_tag="VGD38_15035"
                     /inference="COORDINATES: protein motif:HMM:NF024844.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HEY0729392.1"
                     /translation="MKLNIGDTATRTKTITDEDVRAFAAVSGDKNPIHLDESFAANTS
                     FGKRIAHGMLSASLISAVLANDLPGQGSIYMGQTLKFVAPVFIGDEITARVTVTSVRD
                     DKPIAKLETVCVNQRNEIVIKGEATIHYGNCR"
     gene            complement(999..1865)
                     /locus_tag="VGD38_15040"
     CDS             complement(999..1865)
                     /locus_tag="VGD38_15040"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY0729393.1"
                     /translation="MRKQIATLFLILLSAVVASAAQQGQPASAQKEVVVFGQKIRYLE
                     AGSGPTVILLHGLGGSGQNWMFTIGGLSPQFRVVVPDQIGFGNSDKPAINYRVRTYVD
                     FLDQFCKQLKIERATLVGHSMGGWIAAAFTIAFPERVDRLVLADSTGYAPPANFDFNS
                     LYSLNPSTREGMKQLVARVFFNPTFKSDAMIDQFLAQRMSAGDGHTINSLIESVSRRE
                     DFLDGQVDKIKVATLIVWGREDGLVLLNEGERFKKDIANSKLVVFDQCGHFPQVEKAG
                     EFNATVLGFLKQ"
     gene            complement(1858..>3163)
                     /locus_tag="VGD38_15045"
     CDS             complement(1858..>3163)
                     /locus_tag="VGD38_15045"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AMP-dependent synthetase/ligase"
                     /protein_id="HEY0729394.1"
                     /translation="EQCQYIIDHSDAAFVVVDTQAQLEKILSVRAELPKVQFIIVLDE
                     QAASAAPDVVSYRKFLELGRQSRDQFASLLSERGNGAAPYDVAIMVYTSGTTGRPKGA
                     CLSHRYIINSVESLRQTIPIFDTDVSFSYLPFCHVAERISGLYNRLYAGAPVYFVDDL
                     ARLNEYMLEVKPTVFASLPRFFEKIHAQIVATENTDIKYYFGGRIRLLTSGGAPLPLE
                     VNEFFAAAGLPILQAYGLTENVCVAFNRVDHYKFGTVGLPMPGCEVKLAPDGEILVRS
                     EMMFSGYYKAPEDTAAAFSDGWLLTGDLGEFDEDGFLKITGRKKELIVTSTGKKIAPS
                     LIENMLKEHHLISQAMVYGEGKSYLVALITLSSAAPDAKQVVQQKIDDVNRRVSSTES
                     IKKFAVLDRDFEIAKDEITPTGKIKRDVVAQRYSKLIEELYA"
BASE COUNT          698 a          931 c          886 g          648 t
ORIGIN      
        1 cgctcttcac gcagcagaaa gacgagcacg gcaaccagca gaccggggaa accgagaaag
       61 tagaacgccg cgcgccaacc gaagtactgg ccgatccagc cgccaaagaa aaacgcgagg
      121 cccgcgccaa gcgtcacgcc cgacgcgtag atcgcctgca ccgtcgcgcg catacgcggc
      181 ggaaagtagt cgctgagtaa cgagagtgcc gccggtccca gcgtcgcttc gccgacgcca
      241 accatcacgc ggcaaagaaa cagcggccag aagcccgtcg caaacccggt caagcccgag
      301 aacagactcc acaccgcgag ccccgcggcg atcatatttt tgcgcgagct gcgatcggca
      361 agacgtccga acggaatgcc gagcagcgtg aagaagatga cgaacgacgt cgtgccgagc
      421 agaccgagtt cgaagtcgct gaacgacatc tcctgtttga tcggcgcgaa gagaatgtag
      481 atcagcgtgc gatcgagaaa gttgagcagg tagacaaacg tcaacaacgc gagcgcgtac
      541 catgcgtagg cgccaatctt cggttcggcg ttcgcttccg gagttggggc ggttggttca
      601 acggcagttg ccataatgga tggtagcctc gcctttgatc acgatctcgt tgcgttgatt
      661 gacgcagact gtttccagtt ttgcgatcgg cttgtcgtcg cgaaccgacg ttactgtgac
      721 gcgcgcggtg atctcgtcgc cgatgaaaac cggcgcgaca aacttcaacg tctggcccat
      781 gtagatgctg ccctgtcccg gcaagtcgtt tgcgagcacg gcggagatca gcgacgcgct
      841 caacattccg tgcgcgatgc gttttccaaa gcttgtgttt gcggcaaagc tctcatccag
      901 atgaatcgga tttttatccc cgctaacagc cgcaaacgct cggacgtcct cgtccgtaat
      961 cgttttggtc cgagtcgctg tgtcgccgat gttcagtttc actgttttaa gaaccccagc
     1021 accgtggcgt tgaactcacc ggctttttcc acctgcggga aatgaccgca ctgatcgaag
     1081 acaaccagct tcgagttggc gatgtctttc ttgaaacgct cgccttcatt gagcagcacc
     1141 aggccgtctt cgcgtcccca aacgatcagc gtcgccactt tgatcttgtc tacctggccg
     1201 tcgagaaagt cttcacgccg gctcaccgat tcaatcagac tgttgatcgt gtggccgtcg
     1261 cccgcactca tgcgctgggc caggaactga tcgatcatcg cgtctgactt gaaggtcggg
     1321 ttgaagaaaa cccgggccac caactgcttc atgccttcgc gcgtcgaagg attcaaactg
     1381 tagagcgagt tgaaatcgaa attcgcgggc ggcgcgtagc cggtggagtc tgccaacaca
     1441 agccgatcga ctctctccgg aaacgcgatc gtgaacgccg cggcgatcca gccgcccatc
     1501 gagtggccca ccaaggtcgc gcgctcgatc ttcagttgtt tacaaaactg gtcgaggaaa
     1561 tcgacgtacg tgcgcacccg ataattaatc gcgggcttgt cagaattgcc gaaacctatc
     1621 tgatccggaa ccacaacacg aaactgcggc gacaacccac cgatcgtaaa catccagttc
     1681 tgaccgctgc cgccgagtcc atgcaacaga atcactgtcg gtccggagcc cgcttccagg
     1741 taacggatct tttgcccgaa cacgacgact tccttttgcg cggaagcggg ttggccctgc
     1801 tgagccgcgg acgcgacaac ggcggagaga agaattagaa acagagtggc gatctgttta
     1861 cgcataaagc tcctcgataa gttttgagta acgctgggcc acgacgtcgc gctttatctt
     1921 gcccgtcggc gtgatctcgt ctttcgcgat ctcgaaatcg cgatcgagca cggcgaactt
     1981 cttgatcgac tccgtggagg agacgcggcg gttcacatcg tcgatcttct gttgcacgac
     2041 ctgttttgcg tccggcgccg cgctactcag cgtgatcaaa gcaacgagat aactcttgcc
     2101 ctcgccgtaa accatcgcct ggctgatcag gtgatgctct ttcaacatgt tctcgatcaa
     2161 cgaaggcgcg atcttcttgc cggttgaagt gacgatcaac tccttcttcc gccccgtaat
     2221 cttgaggaag ccatcctcgt cgaactcgcc gaggtctcct gttagtaacc agccgtctga
     2281 aaaagcagca gccgtgtctt caggagcttt gtagtaaccg ctgaacatca tctcgctgcg
     2341 cacgaggatc tcgccgtcgg gcgcgagctt tacttcgcag cccggcatcg gcaaaccgac
     2401 tgtgccaaac ttgtaatggt ccacgcgatt gaaagcaacg caaacgttct ctgtcaggcc
     2461 gtatgcttgc agtatcggca agccggctgc ggcaaagaac tcgttcactt cgagcggcaa
     2521 cggcgcgccg cctgaagtca acagacgaat ccggccgccg aagtaatact tgatgtctgt
     2581 gttttcagtg gccacgatct gagcgtggat cttttcgaag aaccgcggca ggcttgcgaa
     2641 gactgtcggc ttcacttcca gcatgtactc gttcaaccgc gcgagatcgt cgacgaagta
     2701 cacgggcgcg cctgcgtaga ggcggttgta aagtccggag atccgctcgg cgacgtgaca
     2761 gaaggggaga taggaaaagg aaacgtcggt atcgaagatc gggatcgttt ggcgtagaga
     2821 ctcgacgctg ttgatgatgt aacgatgact caggcacgcg ccttttggac gtcccgtcgt
     2881 tccggacgtg taaaccatga tcgccacgtc gtacggcgct gcgccgttgc cgcgttcgct
     2941 caagagcgac gcaaactgat cgcggctctg acgcccgagc tcgagaaact ttctgtagct
     3001 gacaacatcg ggcgccgcgc ttgccgcctg ttcgtcgagc acgatgatga attgcacctt
     3061 cggcaactca gcgcgaacgc tcaggatctt ttcgagctgc gcttgagtgt caaccactac
     3121 gaacgcagca tcggaatgat cgatgatgta ctggcactgc tcg
//
LOCUS       DASWTX010000990        11314 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_142136, whole genome shotgun sequence.
ACCESSION   DASWTX010000990 DASWTX010000000
VERSION     DASWTX010000990.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11314)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11314
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142136"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..805)
                     /locus_tag="VGD38_15050"
     CDS             complement(<1..805)
                     /locus_tag="VGD38_15050"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0729395.1"
                     /translation="MQGVEISNGREDNSVLIVNDEPDQLRLMRTLLNKAGYSVLTADD
                     GVEGLALAKRERPDLVISDVTMPQMNGLDFCRHLRADSELKTVPILLISAHQKDTETV
                     VEGLRAGADDYLEIPCDSTRLIAKVSRLLERSRLEASYRDLVEQASDVIFTQDLNGRL
                     TSINLAGEKFLGRNQDEIIGNSFFALFGVIPENNGFAGGLKNPREVRHQFLAHSAAGE
                     DRWLDLILSPIKKLDETIGFRGLARDITERKRFEEALRDSEERYRLLFES"
     gene            1115..2509
                     /locus_tag="VGD38_15055"
     CDS             1115..2509
                     /locus_tag="VGD38_15055"
                     /inference="COORDINATES: protein motif:HMM:TIGR02037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegQ family serine endoprotease"
                     /protein_id="HEY0729396.1"
                     /translation="MSLQPATPAAPAASTAALPDLQTSYAELVSRVSPAVVTIRSTER
                     ARTARQFPFMDDPQFREFFGDRLPQQPQRPVQGVGSGVIVSSDGYILTNHHVVDGALE
                     IRVEMTDNRTFTAKLVGSDPPSDLAVLKIDAKDLPTLSLSDSDKVRVGDPVLALGNPM
                     GIGQTVTSGIVSAKGRSTGLSDGSFEDFLQTDAAINRGNSGGALVNTSGQLIGINSQI
                     LSPSGGNIGIGFAIPSNMAKAVMDQLLTNGKVSRGMLGVTIQSVDADMAASLNLPAAR
                     GAIVSSVTAGGPAERAGIRRGDVVTAINNQPVIDNNSLRNQVASLKPGSTASVTVVRN
                     GRDQNIQVTLAELPNSERPETEESSSNNGGGPGVNNSRFGMRLQPLTSESASTYGLAA
                     TDQGLLVSQVDPSGSAAGAGIRQGDLIQEVNRQPVRTFAEFSSAIQQSGARPALVLVK
                     RRDRVIYVTLRANS"
     gene            2602..2946
                     /locus_tag="VGD38_15060"
     CDS             2602..2946
                     /locus_tag="VGD38_15060"
                     /inference="COORDINATES: protein motif:HMM:NF013234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannose isomerase type II C-terminal
                     cupin domain"
                     /protein_id="HEY0729397.1"
                     /translation="MREFDQRPWGNYTVLEEAPTFKVKRIEVLPGKRLSYQKHAQRAE
                     HWYVVAGTAKVTLDGRDITVSHGEAIDIPVGAAHRVENPGTEDLIFIEVQRGNYLGED
                     DIVRLEDDFGRA"
     gene            2921..4360
                     /locus_tag="VGD38_15065"
     CDS             2921..4360
                     /locus_tag="VGD38_15065"
                     /inference="COORDINATES: protein motif:HMM:TIGR00797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEY0729398.1"
                     /translation="MRTILDARDSSITPAVEDQPSLWSDIKESIRGSHRSYTSGPIGR
                     SILLLAIPMVLEMLMESVFAVVDIFWVSHLGTDAAATVGLTESLLTLIYALAIGLSIG
                     AMAMIARRIGEGNPEGAARAAVQAIALALLVSTVIAVVATPMAPKLLAIMGGSPWVIE
                     HGSAFTRIMLAGNATVVVLFMVNAIFRGAGDAAIAMRTLWLANWINIVLGPCLIFGLG
                     PFPKMGIVGAAIATNIGRGAGALYALSRLVRSGGRFDVRWRHLRLEPSIMLRLLRLSG
                     TGTFQVFIGMASWIGLVRIISSFGSNAVAGYTFGIRVILFALLPSWGMANAAATMVGQ
                     ALGAGNPERAERAVWKAGFYNMIFLGAVGVLFIVFAPQIIGFYTTDPDVAQYGVDCLR
                     IVAYGFLFYAYGMVLGQSFNGAGDTWTPTVINLFVFWLWEIPLAYVLSVMLGLGPRGV
                     FIAITIAFSTLAVVSGAVFRQGRWKRKVV"
     gene            4512..5078
                     /locus_tag="VGD38_15070"
     CDS             4512..5078
                     /locus_tag="VGD38_15070"
                     /inference="COORDINATES: protein motif:HMM:NF014068.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase
                     domain-containing protein"
                     /protein_id="HEY0729399.1"
                     /translation="MSTNLKGKKIAILVADGFEQVELTGPKEALEAAGAEIEIVSPAE
                     GEVQGWNHDEKADLFPVDMPLNLARSDDYDALVLPGGVRNPDQLRMSTRAVEFVDGFF
                     ATGKPVAAICHAPWLLIETEVIKGRNITSWPSLKSDLINAGAHWVDRQVVVDNGLITS
                     RKPQDIPAFNKKMIEEFAEGRHSRQRAA"
     gene            complement(5089..5649)
                     /locus_tag="VGD38_15075"
     CDS             complement(5089..5649)
                     /locus_tag="VGD38_15075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729400.1"
                     /translation="METTVKHLTMDELEAALDHLRETPKDEGVVELIVRRPQIDEREV
                     LEVAELDPQQGLIGDNWISRGSRRTPDGSPHPEMQINIMNSRVAALVAQEKERWSLAG
                     DQFYIDMDLSKENLPAGTRLAIGSAVVEVSPLPHTGCHKFIARFGEDAMKFVNSAVGK
                     ELCLRGINAKVVQAGTVRLGSTAKKL"
     gene            5707..6489
                     /locus_tag="VGD38_15080"
     CDS             5707..6489
                     /locus_tag="VGD38_15080"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEY0729401.1"
                     /translation="MKRSLLLLIIFAVVLSGCGRADKAREGLARLNVEYSETSFIANA
                     REGNSEAVKLFLDAGMNTEVKTKDGQTALMVAALGNEAAVVKVLLEAGADVNAKNRYN
                     GTALMAAAWKGHLETVELLLAEDPDLSIKDNRGMTALMFAAWENHPAIVRALLNKGAE
                     VNVVDTDGWTALMRASFRGHAEPARALIEKGADVNARSNNGEVALISAAENGHVETTR
                     ILLDHGANLNAQNNENKTALHKATEKGHTEIVDLLKSRGARS"
     gene            6966..9068
                     /locus_tag="VGD38_15085"
     CDS             6966..9068
                     /locus_tag="VGD38_15085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729402.1"
                     /translation="MKIKALKLLTLVSLLIACALPVLFFSGKASTEPDPSLAGLGFGS
                     LETFEANYKAWEAEYLKNGGDQNMVLAMGWFKGLSTGNSYASGTASFNLVDGNVSVAI
                     NGLSKDEGWDVWMVDSAPGRSIGLESDDNMLRLGSLKHEGKTASLVAQLGKDAFTTFN
                     MDLIIVAKAGKNPIEDRTLIGTTSLFHRVYRSKQQGQYGVLADADPVAPEPDTRGFFE
                     RVVDAINPTASAQIGPNPNPSTPLHFSIKRGRESFFNETFNGNGRTCGTCHREDGNLT
                     IDPEFIEDLPPNDPLFVAEFVPALANNFENPVLMRKFGLILENPDGFDNLPSKFVMRG
                     VPHTLALLQNTLTPVSPAPGATPLPDGSLPSQDGTTIPPNERTGWGGDGAPGTGTLRE
                     FIIGAVVQHYPKTLNRQAPGDFRLPTTGELDDLEAFQKSLGRRQDLDLNAMQPKIRNE
                     VARRGLVIFNSPGSVLGQPNEGAGKCFFSHLNAGGSDFFFPGQNANFNTNVEGLPSQP
                     ADLVPGQLNPQDGGFGRLGVSPTGGFGNGSFNTPVLVEAADTGPFFHNNAIETIEGAV
                     DFYNSTAFNTAPGFGAAIGGIRLEATEVVAVAAFLRVINVLENERSARDLINRIKIAT
                     SQHQAEELANLAVSEIDDAIQVLDGGGLHPKAQRDLKRARRNAKQAGQETSVSMRVAE
                     ANQALGFLSQAKADIIDP"
     gene            9465..9761
                     /locus_tag="VGD38_15090"
     CDS             9465..9761
                     /locus_tag="VGD38_15090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729403.1"
                     /translation="MSEETRTNYPQSKYKLEDFSQQAINRGQQEINYLITVADEKIVE
                     ALKQLSNAVAKLAACGQVDLKALDHAITEVSEATKDIAGPFPPGCNPNGNLRLS"
     gene            complement(9833..>11314)
                     /locus_tag="VGD38_15095"
     CDS             complement(9833..>11314)
                     /locus_tag="VGD38_15095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729404.1"
                     /translation="VATNASTLAVAPDDVKYLGVTFSPDSNYIYFTSKAGSGPGILYQ
                     LALTGSNPTKIKTGVDSPISFSPQGDRFAFVRQNTQNAEFLLMLSNTDGSNERVLGSR
                     NGGDRLSTYGPAWSPDGSIVVCPAGRWESTTSYRMKLVAFDVLTGREQIIGQQTWLTI
                     FQIAWQDGNNLIVNAREHDPSLYKLWRVHFPDGTAQTLTPDLEEYSGVSIAGGNIVTV
                     RTSRSWRIWGANVDEPGKEMEFASGTDIKYGLTWTSQAKIVYSSLTLDRLHISSIDPD
                     SGNVVQLTNTGDNYFPAASPDGRYIVFSSTRNGSTNIWRVNPDGSEPAQLTFTDGNYY
                     PSVSPDSQWVAYDNVAGPLVTIWKVSIHGGEPIKIGERYRMPAFSPDNQFIVGRYNHE
                     SSPEGGALFPVHGGEPVRQFEIPHQEWQRIQWLSNREVSYIKDEGGYSNIWSLHVDTE
                     VKKQLTHSNNSDRIYAYAWSPDYKRVACMRGSNNSNVIMITEQ"
BASE COUNT         2448 a         3093 c         3305 g         2468 t
ORIGIN      
        1 tggattcaaa caggagccgg taacgctctt ccgagtcgcg cagtgcttct tcaaaacgct
       61 ttcgttcggt gatgtcgcgg gcgaggccgc gaaaaccgat ggtctcgtcg agtttcttga
      121 tcggcgacag gatgaggtcg agccagcggt cttcaccggc cgccgagtgc gcgagaaact
      181 ggtggcgcac ctcgcgcggg ttcttcagac cgcccgcaaa accgttgttt tccggaatca
      241 cgccaaaaag cgcaaagaac gagttgccga taatctcgtc ctgattgcga cccaagaact
      301 tctcgcccgc gaggttgatg ctcgtcagac ggccgtttag atcctgtgta aaaatgacgt
      361 cgctggcctg ttcgacaaga tcgcggtaac tcgcttcgag tcgcgagcgt tccagcaggc
      421 gtgagacttt tgctatgagc cgggttgagt cgcacggaat ctcgagataa tcgtcggcgc
      481 cggcgcgcaa tccctcgaca actgtctcgg tgtctttctg gtgcgcgctg atcagcagga
      541 tgggaacggt tttgagttca ctatcggcgc gcaggtgccg gcagaaatcc agcccgttca
      601 tctgcggcat cgtgacgtcg ctgatgacga ggtccgggcg ctcgcgtttc gccagtgcga
      661 gaccctcgac accatcgtca gcggtaagta cgctataccc tgctttgttg agcagagttc
      721 gcattaaccg caattgatca ggctcgtcgt tgacgatgag aacggaattg tcctcgcggc
      781 cgtttgagat ttctaccccc tgcatcttgt tcctcgaatt ggcgccgcgg ctggaaaatc
      841 aggggaacat gcggctatcg ggctatttca ctaggtttgc cgcgcgggag tatagcacac
      901 gcaggcaacc cgcaacccct cccaaacctt cggtaaaccg aaaagcacgc ttgtgaatca
      961 aaagtctaca tttattaacg gcatgaactt gagaaagaga gaagagatga atattagcgg
     1021 acgttttcgg ggagccagct cccgtctcaa catacttttg agtctggcat tggtagtgtt
     1081 ttcgtttgcc tcatgcagtg gccagagccg ggcgttgagt cttcaaccgg cgactcccgc
     1141 tgctccggcc gcgtcgaccg ccgctctgcc ggatcttcag acttcgtacg ctgaattggt
     1201 gagccgcgtc tcaccggccg tcgtcacgat tcgatcgacg gagcgagcac gaacagcgcg
     1261 acagtttccc ttcatggacg atccccagtt tcgcgaattc ttcggggatc gacttccaca
     1321 acagccgcag cggccggtgc agggcgtcgg ttcgggagtc atcgtcagtt ctgacggcta
     1381 cattctgaca aaccatcacg tggttgacgg cgcgctcgag atcagagttg aaatgaccga
     1441 caaccgcacg ttcactgcca aactggttgg ctcggatccg ccgagtgacc tcgcggtgtt
     1501 gaagatcgac gcgaaagacc tgccgacgct ttcgctcagc gattcagaca aagtgcgcgt
     1561 cggcgatccg gtcctggcgc tcggcaaccc gatgggtatc ggacagaccg tcacctccgg
     1621 catcgtcagt gcaaaaggcc ggagcaccgg attgagcgac ggcagttttg aagactttct
     1681 tcagaccgac gccgccatca atcgcggaaa ctcaggcggc gctctcgtca acacgagcgg
     1741 ccaactgatc ggcatcaatt cgcagattct ttcaccgtcc ggcggcaaca tcggtatcgg
     1801 tttcgctatt ccttcaaaca tggcgaaagc ggtgatggac cagttgctga ccaacggcaa
     1861 ggttagccgt ggcatgctgg gcgtgacgat tcagtcagtc gacgcggaca tggcggccag
     1921 tttgaacctg cccgcggcgc gcggcgcgat cgtttcgtcc gtaaccgcag gcggtccggc
     1981 ggagcgagcc ggaatcagac gcggtgacgt ggttacggcc atcaacaatc agcccgtcat
     2041 cgataacaac agcctgcgca atcaggttgc gagcctgaag ccgggttcga ccgcgagcgt
     2101 tacggtagtg cgcaacggcc gcgatcagaa catccaggta acgttggcgg agttgccgaa
     2161 ttcggagcgt ccggaaaccg aagagtccag cagcaacaat ggcggcggtc caggcgtgaa
     2221 caactcgcgg tttggaatga gattgcaacc gcttacaagc gagagcgctt ctacttacgg
     2281 acttgcggct accgatcagg gtctgctggt gtcgcaggtc gatccttcgg gcagcgccgc
     2341 gggcgccgga atccggcagg gcgatctgat tcaggaggtc aatcgccaac cggtccgaac
     2401 gttcgcggag ttcagcagtg cgattcaaca gtcgggcgca cgtccggcgc tcgtgctggt
     2461 caaacgacgc gaccgagtaa tctatgtgac cttgcgagct aactcgtaag ttcagttaac
     2521 aacaacaagc aagccgttcg cggatctcga taatcgcgag cggctttttt gtgcttaaat
     2581 gacgcccggg ggatcaagac agtgagagaa ttcgatcaaa ggccgtgggg caactacacc
     2641 gttctggaag aagcgccgac tttcaaggtc aaacggatcg aggtgttacc cggaaaacgt
     2701 ttgagttacc agaaacacgc gcaacgcgcg gaacattggt acgttgttgc cggtacggca
     2761 aaggtaactc tcgacggccg cgacatcacg gtcagtcatg gcgaagcgat cgatattccc
     2821 gtcggcgccg ctcatcgcgt cgaaaacccg ggcacggagg atctgatctt catcgaagtg
     2881 caacgcggaa actatcttgg cgaagacgac atcgtgcgtc ttgaggacga ttttggacgc
     2941 gcgtgattcc tccatcaccc cagcggtaga agaccaacca agcctctggt ccgatatcaa
     3001 agagtcgatt cgcggctcgc atcgcagtta caccagtggt ccaatcggaa gatcgattct
     3061 gttgctcgcc attccgatgg tgttggagat gctcatggag agtgtcttcg ccgtcgtcga
     3121 catcttttgg gtctcgcatc tcggcaccga tgccgccgcg accgttggtc taactgaatc
     3181 cctgctcact ttgatctacg cgctcgcgat cggtctgagc atcggcgcga tggcgatgat
     3241 tgcgcggcgc atcggcgaag gaaatcccga gggcgcggcg cgtgcggcag tgcaggcgat
     3301 tgctctcgcg ctgctggtgt cgaccgtgat cgccgtggtc gcgacgccga tggcgccgaa
     3361 gctcctggcg atcatgggcg gttcgccgtg ggtgatcgaa cacggctccg cgttcacgcg
     3421 catcatgctc gcgggaaacg cgaccgtcgt cgtgctgttc atggtcaacg cgatctttcg
     3481 cggcgccggc gacgcggcga tcgcgatgcg cacgttatgg ctcgcaaact ggatcaacat
     3541 cgtgcttggt ccgtgtttga tcttcggtct tggaccattt cccaagatgg gcattgtggg
     3601 tgcggcgatc gcgacgaaca tcggtcgtgg cgcgggcgca ctttatgcgc tgagccgtct
     3661 cgtgcgatca ggcggacgct tcgacgtgcg atggcggcac ctgcggctcg aaccgtcgat
     3721 catgttgcgg ctcctgcggt tgtcaggcac gggaacgttt caggtgttca tcggcatggc
     3781 gagctggatt ggtctcgtgc ggatcatctc gagttttggc agtaatgcag tcgccggtta
     3841 cacgtttggc attcgggtga ttctgtttgc gctgttgccg tcgtggggca tggcgaacgc
     3901 cgcggcgacg atggttggcc aggcgctcgg cgctggaaat cccgaacgcg cggagcgcgc
     3961 tgtttggaaa gccggcttct acaacatgat ctttctcggc gctgttggcg tgctgtttat
     4021 tgtgtttgcg ccgcagatca tcgggttcta tacgactgat ccggacgtcg cgcagtatgg
     4081 cgtcgactgt ttgcgaatcg tggcttatgg ctttctgttt tatgcctacg gcatggtgct
     4141 gggacagtcg ttcaacggcg cgggcgacac gtggacgccg acagttatca acctctttgt
     4201 tttctggtta tgggaaattc cactcgccta cgtgctcagc gtgatgctcg gtctgggacc
     4261 gcgcggagta ttcatcgcga tcaccatcgc attttcgacg ctcgcggttg tcagcggcgc
     4321 ggtcttccgg cagggccgtt ggaagcgcaa ggtcgtttag accgcactac tttccagtag
     4381 cgagtccgaa cagtgtgtcg gactttgtta cgttcgtgac cgcactatct cgcaatctgt
     4441 tcgcaattct tgacggcacc tttgttgcaa tggggggctg tgaatttttg gcgagcatgg
     4501 agggggaact tatgagcact aatttaaaag gcaagaaaat cgcgattttg gtggccgatg
     4561 gattcgaaca ggttgaattg actggtccaa aggaagcgct ggaagcagcg ggcgcggaaa
     4621 tcgagatcgt ttcacccgct gagggagaag tgcagggttg gaatcacgac gagaaggcgg
     4681 acctgtttcc ggtcgatatg ccgttgaatt tggcgcgatc tgatgattac gacgcgctgg
     4741 tgttgccggg cggcgtgcgc aatccggatc aactgcggat gtcgacgaga gcggtcgagt
     4801 ttgtggacgg atttttcgca acgggaaagc cggtggcggc gatctgtcac gcgccgtggt
     4861 tgctgatcga aacggaagtg atcaagggca ggaacatcac atcgtggccg tctttaaaaa
     4921 gcgatctaat aaatgcgggc gcacattggg ttgatcgtca ggtggttgtc gataacgggc
     4981 tcatcacgag ccgcaagccg caggatatac cagcctttaa taagaagatg atcgaggagt
     5041 ttgccgaagg gcgtcactcc cggcagcgag ccgcttaacg tttcgagcct aaagtttctt
     5101 cgcagtggat ccgagccgga cagtaccggc ttggaccact ttcgcgttga tgccgcgcag
     5161 acagagttct ttacccaccg ctgaatttac aaacttcatc gcgtcctcgc cgaagcgggc
     5221 aataaacttg tggcaaccgg tgtgcggcaa tgggctcact tcgaccacgg ccgaaccgat
     5281 cgcgagacgt gttccagccg gcaagttttc cttgctgagg tccatgtcga tgtagaactg
     5341 atcgccggcg agactccagc gttctttttc ctgggccacg agcgcggcaa cgcgtgagtt
     5401 catgatgttg atctgcatct ccgggtgtgg gctgccgtcc ggagtgcggc ggctgccgcg
     5461 agagatccag ttgtcgccga tcaggccttg ctgcggatcg agttcggcta cttcgagaac
     5521 ttcacgttcg tcgatctgcg gccggcgcac gatcaattcg accacgcctt catccttcgg
     5581 cgtctcacgc aagtggtcca acgccgcttc gagctcgtcc atcgtcaggt gttttactgt
     5641 agtttccata gcacttttac gaagcgcata ctatacgata atcttgccgc gaaagagaaa
     5701 aagcctatga agcgcagttt actattgcta atcatatttg cggtggtcct gtcgggttgt
     5761 ggcagggccg acaaagctcg cgaggggctc gcgcgtttga acgtcgagta ctcggagacg
     5821 agcttcatcg caaatgcgcg cgagggtaac agcgaggcgg tgaagctgtt tctagacgcg
     5881 ggcatgaaca ccgaagtaaa gaccaaagac gggcaaacag ctctgatggt cgcagcactc
     5941 ggtaatgaag ccgcggtggt gaaggtgttg ctcgaagccg gcgctgatgt gaacgcgaag
     6001 aacaggtaca acggcactgc gttgatggcc gcggcatgga aaggccacct cgaaactgtc
     6061 gagctcctgc tggccgaaga ccccgacctc tcgatcaaag acaaccgcgg catgacggcg
     6121 ttgatgtttg cggcgtggga aaaccacccg gcgattgttc gcgcgctgtt aaataaagga
     6181 gcggaagtga atgtggtcga caccgatggc tggacggcac tcatgcgcgc gtcgtttcgc
     6241 ggacacgcag agcccgcgcg cgctttgatc gagaaaggcg ccgacgtcaa tgcgcggtcc
     6301 aacaacggtg aagtggcact aatcagcgct gctgaaaacg gccacgtcga aacgacccgc
     6361 atcctgttag accacggcgc caacctgaat gcacagaaca acgaaaacaa gaccgctctg
     6421 cacaaggcca cggaaaaggg ccacaccgag atagttgatc tcttgaagag ccgaggggct
     6481 cgttcgtaaa cctatgtcgt cgttctgagt tcaagcttta gcttgccgga caacctaaag
     6541 gttgaactca aaactccgtc taccacagca agtttgtcat acgaattacc cttgacagca
     6601 tcgtctagtt agtgaagaat ctccgcgcac gtcaataacc ctcgtacgcg ctcgagtgaa
     6661 aaacacctga gcgtctccca aacaaagcct ggacacctca cacggtctca gaaacctgag
     6721 tagagaagcg tttccactcc cgactctctc gtggtcttaa ctggctcgca gtgaaggtgt
     6781 tactactacc ttcctccgtt ccagtcgcgc tcgaaccatc agggctgaca aggggctttt
     6841 agcaagtagg tacaaggaaa gatcaacgct gactctggtt ctgcagaacc cgggtaagtg
     6901 tatgcgctgg tccaggtaga actggcttgg gccataaacg tgccgaaccc tcatgaggag
     6961 gatctatgaa gatcaaggca ttgaagctat tgacgttagt aagcttgctc atagcttgcg
     7021 cgcttccagt gctctttttt agtggcaaag cttcgactga acccgacccc tcactcgctg
     7081 gactgggatt cgggagtctc gaaacgtttg aagccaatta caaggcatgg gaagcagagt
     7141 atttgaaaaa tggtggagac cagaacatgg tcctggcgat gggctggttc aaaggactgt
     7201 cgaccggcaa ctcatacgcc agtggaacgg ccagtttcaa tcttgtggac ggaaacgtct
     7261 ccgtcgcaat taacggtctc tcgaaagacg aaggttggga cgtctggatg gttgacagcg
     7321 ctcccggccg tagcatcggt ctcgaaagtg acgacaacat gctgcgcctc ggcagcttga
     7381 aacacgaggg taagaccgcc agtctcgtgg cccaactcgg caaggacgcg ttcacgacgt
     7441 tcaacatgga cctgatcatc gtggcgaagg cgggcaagaa cccgattgaa gaccgaacgc
     7501 tgatcggtac gacctcgctt ttccatcgcg tctatcgcag taaacagcag ggacagtatg
     7561 gtgttctcgc tgatgccgac ccggttgccc ctgagcccga cacgcgcggg ttcttcgagc
     7621 gggtcgtcga tgcgatcaac ccgactgcct cagcgcagat tggtccaaat ccgaatccga
     7681 gcactccgct gcacttttcc atcaagcgtg ggcgggagag cttctttaac gaaacgttca
     7741 acggcaatgg ccgcacttgc ggaacttgcc accgggaaga tggcaacctg accatcgacc
     7801 ctgagttcat cgaagatctt ccgccaaacg atccgctttt cgttgcggag tttgtgccgg
     7861 ctctcgcaaa caatttcgag aacccggtgc tgatgcgtaa gtttggtttg atcctcgaga
     7921 acccggacgg attcgacaac ctgccgagca agtttgtcat gcgcggcgtg ccgcacactt
     7981 tggcgctgtt gcagaacacg ctgactccgg ttagcccggc tccaggtgcg acaccgcttc
     8041 cggatggcag cctcccgtcg caagacggca ccaccattcc gccaaacgag cgaactggtt
     8101 ggggcggcga cggagctccg ggaacgggaa ctctgcgaga gttcatcatc ggcgcggtcg
     8161 tgcagcacta tccgaagacc ctgaatcgtc aggcgcccgg cgattttcgt ttgccgacga
     8221 cgggtgagct tgacgacctc gaagcgtttc agaaatctct tggccgcaga caggacctgg
     8281 atttgaacgc gatgcagcca aagatcagga acgaagttgc gcggcgagga ctcgtgatct
     8341 tcaacagtcc cggatctgtt ctgggccaac cgaatgaagg agccggcaag tgtttcttca
     8401 gtcacctcaa cgcgggtggc agtgacttct tcttccccgg gcagaatgcg aacttcaaca
     8461 ccaacgtcga gggactgcct tcgcaacccg cggatcttgt ccccggacaa ctcaatccgc
     8521 aggacggtgg ctttggccgg ttaggcgtct cgcccacggg cggcttcggc aacggttcgt
     8581 tcaatacgcc ggtgctggtt gaagcggcag acactggtcc gttcttccat aacaacgcga
     8641 ttgagaccat cgaaggcgct gtcgattttt acaacagcac ggccttcaac actgctccgg
     8701 gttttggcgc agcgatcggt gggatcaggc ttgaagctac ggaggtcgtt gcggtcgctg
     8761 cgttcctgcg cgtgatcaac gtgttggaga acgagcgctc cgcgagggac ctcatcaatc
     8821 gcatcaagat cgccacgagc cagcatcagg ctgaggaact cgcgaatctc gcggtgtctg
     8881 aaatcgatga cgcgattcag gtgctcgacg gtggtggttt acacccgaaa gctcagcgag
     8941 acttgaagag ggcgcgcaga aatgccaaac aggcaggtca ggaaacaagc gtcagcatga
     9001 gagtcgctga ggccaaccag gcactcggtt tcttatctca ggccaaggcc gacatcatcg
     9061 acccgtaaac ctgaaacaca cttaacagca cgcaggcgat gaggttgtac ccatcgcctg
     9121 cgtctttttt taacgactcc aatggctttc gctgagggaa tctagcaacg cttttcgcgt
     9181 ttatacgaca agcaggaaca agtgcccaga ggtctctgga ccaggcttcg tgcattgttg
     9241 tcagtgtagt aacagtttcc tgctgctgtt aacaaagcac gaagtctgtc caggcccttt
     9301 attctcaggt tcaagtctgg gcttaaactc agcggcattc cttaagccac agaattgaac
     9361 aaaactcacc acacttagtg ccggcctcgc cggcaggaag ggtttgtatg tctactcaat
     9421 ttcagtcccc atccccaaac ggtcctgttc caaggagcaa tggcttgtca gaagaaacgc
     9481 gaactaatta cccgcaaagc aagtacaaac tggaagactt cagccagcag gcaattaacc
     9541 gtgggcaaca ggagatcaac tacttgatta ccgttgccga cgagaagatc gtcgaagccc
     9601 tcaagcaact gagtaacgcc gttgcgaagt tggctgcctg cggtcaggtt gacctgaagg
     9661 cgctggacca tgcaataacc gaggtgtccg aagccacgaa agatattgct ggcccattcc
     9721 cgccaggctg caatccgaac ggcaacctgc gccttagtta gtttgcgacg atgagcgacg
     9781 gatctgcgca agcctgcagc ggcagcggca gcggcaacgt gcgatagagc ctttactgct
     9841 cggtaatcat tatcacgtta ctgttgttag acccacgcat acaagcgact cgcttgtaat
     9901 caggtgacca ggcataagcg tagatccgat cgctgttgtt cgagtgcgtg agttgtttct
     9961 tcacttcagt atcgacatgc aaagaccaga tgtttgagta tccaccttca tccttgatgt
    10021 aactcacttc ccggtttgag agccattgga tgcgttgcca ctcctggtgc gggatctcga
    10081 actgcctcac tggctcacca ccgtgaacgg gaaaaagcgc tccaccttca gggctcgact
    10141 cgtggttgta gcgacccact atgaattgat tatccggtga gaatgccggc atacgatatc
    10201 gctcgccaat ttttatcggt tcgccgccgt ggatcgaaac tttccaaata gttactaacg
    10261 gaccggctac attgtcatac gcaacccact gactatcggg cgagacggat ggataatagt
    10321 tgccgtcggt aaaggtcagt tgcgccggct cgctgccgtc cgggttcaca cgccagatat
    10381 tggtagaacc gttacgggta gatgaaaaga cgatataacg gccatcgggt gaagctgccg
    10441 gaaagtagtt gtctccggtg ttagtaagct ggacgacgtt accactgtcc ggatcgatgc
    10501 tggagatgtg tagtctatcc agggtcaagg acgagtagac aatctttgcc tgactggtcc
    10561 aggtaagtcc atactttatg tcggttcccg atgcgaattc catctctttc ccgggctcgt
    10621 ccacgttcgc accccatatc cgccacgaac ggctggttcg taccgtcacg atattgccgc
    10681 cggctatgct gactccagag tactcctcga gatcgggcgt tagcgtttgc gccgttccat
    10741 ccggaaaatg cacgcgccat aacttgtaga gcgacggatc gtgttcccga gcgttgacga
    10801 tgaggttatt tccgtcttgc caggcgatct gaaagattgt gagccacgtt tgttgtccga
    10861 tgatttgttc gcgcccggtc agcacatcaa aggcgaccaa tttcatgcga taactggtgg
    10921 tgctttccca ccgacctgca ggacagacaa caatgctgcc gtcaggcgac caggctgggc
    10981 cataggttga aagtctgtcg ccgccgtttc tgctgccgag cactcgctcg ttggagccgt
    11041 ctgtattcga tagcatcagc aggaattcag cgttttgtgt gttctggcgg acgaaagcaa
    11101 accgatcgcc ttgtggggaa aagctaatcg gactatcgac gccggttttt atttttgtcg
    11161 ggttcgaacc ggtcaatgcg agttggtaga gaatgcccgg gccgctcccc gctttactcg
    11221 tgaagtagat gtagttgctg tcgggcgaaa acgtaacacc caaatacttc acgtcatctg
    11281 gagcaacagc gagcgtcgag gcgttggtcg caac
//
LOCUS       DASWTX010000991         3285 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_103652, whole genome shotgun sequence.
ACCESSION   DASWTX010000991 DASWTX010000000
VERSION     DASWTX010000991.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3285)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3285)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3285
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103652"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            216..500
                     /locus_tag="VGD38_15100"
     CDS             216..500
                     /locus_tag="VGD38_15100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729405.1"
                     /translation="MKRRIIRAGGGGIAKRLIKPIPVVGSIFAFGLAGYEIRKKGLLP
                     GAVHVGLDMTPVVGTAKNVLEIFTGDLIPDKPPKTTSSVTPVKQRREDAR"
     gene            complement(472..1848)
                     /gene="gatA"
                     /locus_tag="VGD38_15105"
     CDS             complement(472..1848)
                     /gene="gatA"
                     /locus_tag="VGD38_15105"
                     /inference="COORDINATES: protein motif:HMM:TIGR00132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEY0729406.1"
                     /translation="MSRQTVEFSVGAAERLNERLNAFLEIDREGALGAAEKSEGVLAG
                     VPVAVKDNICVLGMQTSCGSRILGDYHPPYNATVIERLVEAGAVIIGKTNCDEFAMGS
                     SNENSAFGPVRNPWDTTRVPGGSSGGSAAAVAAGIVPVALGSDTGGSVRQPASLCGVL
                     GLKPTYGRNSRYGLVAFASSLDQVGVFAREVADVARVLGVIAGRDRRDSTTADVPVPD
                     YVAALEGDLKGARIGFPRALFGKGLDEEVSAAVKSVVDVYRELGAEIVDVELPNAGYA
                     IAVYYIIATAEASSNLARFDGVRYGFRAEDAPELRQMYRKTREEGFGAEVKRRIMLGT
                     YVLSAGYYDAYYRKAQQVRTLIKNDFLNAFKNCDAIITPTSPTPAFALGEKVDDPLSM
                     YLNDIYTVTANLAGIPGLSVPCGLSAARLPIGFQLLGPYWSEPTLLKLAHGYVQARPF
                     TERPPVSA"
     gene            complement(1859..2155)
                     /gene="gatC"
                     /locus_tag="VGD38_15110"
     CDS             complement(1859..2155)
                     /gene="gatC"
                     /locus_tag="VGD38_15110"
                     /inference="COORDINATES: protein motif:HMM:NF014716.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEY0729407.1"
                     /translation="MPITEADIAKVAQLAHLELDDEELKTFVPQITEIVNYVEQLNEL
                     DTANVEPALGGLTPEGEQTDSSRADELQPSLGQKLALAEAPDSAAGHFRVPKVL"
     gene            complement(2146..2442)
                     /locus_tag="VGD38_15115"
     CDS             complement(2146..2442)
                     /locus_tag="VGD38_15115"
                     /inference="COORDINATES: protein motif:HMM:NF017103.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DciA family protein"
                     /protein_id="HEY0729408.1"
                     /translation="MEGLIKSLPAVLRASGNAPEVIEAAAIAAWKHAAGDGLKEHAVP
                     LGLQDRTLRIAVPDAIWQRQLHTMRGSMLYRVNTLLGQPLVNSIEFIIDPKLCP"
     gene            2494..3066
                     /locus_tag="VGD38_15120"
     CDS             2494..3066
                     /locus_tag="VGD38_15120"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HEY0729409.1"
                     /translation="MSNHLREKVVLASSSPRRKELLDAVGWPYEAIVAGIDESLFANE
                     EPAVYVQRLARSKAEAVATRLESGLVLGADTTVVIENEILGQPVDDDDARRMLKLLNG
                     KWHEVLTGVAVVRVGGETLVDYETTRVRFAEMNDREIDWYIATGEARGKAGAYGIQGA
                     AGLFIEEIQGDYFNIVGLPIRLAYELATKV"
     gene            complement(3094..>3285)
                     /locus_tag="VGD38_15125"
     CDS             complement(3094..>3285)
                     /locus_tag="VGD38_15125"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY0729410.1"
                     /translation="IETITSKTGRSAEEALEALKKMSPQNRLVTSEEVAALALLLASD
                     EGRGINGQGINIDGGTVLI"
BASE COUNT          707 a         1018 c          930 g          630 t
ORIGIN      
        1 ggggcttcgc ccctcgttcg gcctttggcc caaacggggc cgagcccgaa ccaggggcac
       61 agccccactt agatcgtata ggctccggcg aggcagagcc tcgcctcaca tccggcggcg
      121 aagccgctgc caaggcgcgg aggacaagct aaagttgaac tgaaccagct tgaacttgaa
      181 acagccgcgc tggtatgttg actacgatga gcagtgtgaa acgcagaatc attcgggctg
      241 ggggtggggg catcgccaaa cgactcatca agcccattcc cgtcgtcggc tccatcttcg
      301 ctttcggcct cgccggctac gagatccgca agaagggcct cctgcccggc gctgtgcacg
      361 tcggtctcga catgacaccc gtcgtcggca ccgccaaaaa cgtactcgag atcttcaccg
      421 gggatctgat ccccgacaaa ccaccgaaaa ccacatcaag cgtgacgccc gttaagcaga
      481 gacgggagga cgctcggtaa acggccgcgc ctgcacgtaa ccgtgcgcca gcttcagcag
      541 agttggctcg gaccagtatg gcccaagcag ctgaaacccg atcggtaatc gcgccgccga
      601 aagcccgcac ggcacactga gcccgggaat accggcaaga ttcgccgtca cggtgtagat
      661 gtcgttgaga tacatcgaca gcggatcgtc aaccttctcg ccgagcgcga acgcgggcgt
      721 cggtgacgtc ggcgtgatga tggcgtcgca gtttttgaac gcgttgagaa agtcgttctt
      781 gatcagcgtc cgcacttgct gcgctttgcg atagtaagcg tcgtaataac ccgcggaaag
      841 cacgtacgtg ccgagcatga tgcgccgttt aacttccgcg ccaaaaccct cctcgcgcgt
      901 cttgcgatac atctgccgca actccggcgc gtcttcagcg cgaaagccgt aacgcacgcc
      961 gtcgaagcgg gcgaggttcg acgaagcttc cgcggtcgcg atgatgtaat agacagcgat
     1021 cgcgtaaccg gcgttcggca attcaacatc gacgatctcc gcgccgagtt cgcgatacac
     1081 atccacgacg ctcttcaccg ccgcgctaac ttcctcgtcg agtcccttgc caaacaacgc
     1141 ccgcggaaaa ccgatccgcg cacctttaag atcaccctcc agcgccgcaa cgtaatccgg
     1201 caccggtacg tcagccgtcg tcgagtcgcg tcgatctctt ccggcgatca cgccgagcac
     1261 acgcgcaaca tccgccacct cacgcgcaaa cacaccaacc tggtccaacg acgatgcaaa
     1321 cgccacgagc ccgtagcgcg agttgcgccc gtaggtcggc ttcaacccca acacaccgca
     1381 aagcgacgcc ggttgccgca ccgacccgcc agtatccgaa ccaagcgcca ccggcacgat
     1441 gcccgcagcc accgcagccg ccgatccacc tgacgaacca cccggcacgc gcgtcgtgtc
     1501 ccacggattt ctgaccggcc caaacgcgga gttctcattc gacgacccca tcgcaaactc
     1561 atcgcagttt gtcttcccga tgatcacggc gcccgcctca accaaacgct cgatcacagt
     1621 agcgttatac ggcggatgat aatcgccgag gatgcgcgac ccgcacgacg tctgcatccc
     1681 tagcacacaa atattatctt tgacggcaac gggcacaccc gccagcacac cctcactctt
     1741 ctccgcggcc cccaacgccc cctcccgatc gatctcgaga aaagcgttga gcctctcatt
     1801 gagcctctcc gcggccccca ccgaaaactc tacagtttga cgcgacatag tttgttgttc
     1861 acagtacctt tggtacgcgg aagtggccgg cggcggagtc gggggcttcg gcgagggcta
     1921 gtttttggcc cagggaaggt tggagttcgt cggcgcgtga ggagtcggtc tgttcgcctt
     1981 ccggagttag accaccgagc gccggttcga cgtttgccgt gtcgagctcg ttgagctgtt
     2041 cgacgtagtt cacgatctcg gttatttgcg ggacgaaggt tttcagttct tcgtcgtcca
     2101 gttcgagatg cgcgagttgc gcgacttttg cgatgtcagc ttctgttatg ggcatagctt
     2161 tggatcaatg atgaattcga ttgagttaac aagcggctga ccgagcaggg tgttcacacg
     2221 ataaagcatc gagcctctca tcgtgtgcaa ctgcctctgc cagatcgcgt cgggcaccgc
     2281 gatgcgcagc gtgcgatcct gcaggccgag tggtactgcg tgctccttga gaccgtcgcc
     2341 cgcggcgtgt ttccacgcgg caatggccgc agcttcgata acctccggcg cgttgccgga
     2401 agcgcgaagg accgcaggta aagatttaat gagcccttcc attgccaacc gtgattgaaa
     2461 cacgcaaact gtctcctcgc aactgaccaa actatgagca atcatctacg agaaaaagtg
     2521 gtcctcgctt cgagtagtcc acgccgcaag gagttactcg acgccgtggg ttggccttat
     2581 gaagccatcg tcgccggtat cgacgaatcg ctcttcgcaa acgaagagcc ggcggtttac
     2641 gtgcaacgac tcgcgcgttc gaaagccgaa gccgtcgcga cgagattgga gtcgggattg
     2701 gtgctgggcg ccgacacaac cgtcgtgatt gaaaacgaga tcctgggcca accagtagac
     2761 gatgacgacg cgcggcggat gttgaagtta ttgaacggca agtggcacga agtgttgacc
     2821 ggcgttgccg tcgtcagagt tggcggtgaa acgttagtcg attacgaaac aacgcgcgtg
     2881 cggtttgcgg agatgaacga tcgcgagatc gattggtaca tcgcaaccgg cgaagcacgt
     2941 ggcaaagcag gcgcgtacgg catacaaggc gcggccgggc tcttcatcga agagatccag
     3001 ggcgactact tcaacatcgt aggtttgccg atccggttgg cgtatgagtt ggccacgaag
     3061 gtttagacaa aagcaggttt agacaaagca ggtttagatg agcacggtgc caccgtcgat
     3121 attgattccc tgaccgttga ttccgcgacc ttcgtcggac gcgagcaaca acgcaagagc
     3181 cgcgacttcc tcagacgtga caagtcgatt ctgcgggctc atcttcttga gtgcttccaa
     3241 cgcttcttca gcggaacgcc cagtttttga cgtgattgtt tcaat
//
LOCUS       DASWTX010000992         1502 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_387518, whole genome shotgun sequence.
ACCESSION   DASWTX010000992 DASWTX010000000
VERSION     DASWTX010000992.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1502
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387518"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..858
                     /locus_tag="VGD38_15130"
     CDS             <1..858
                     /locus_tag="VGD38_15130"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HEY0729411.1"
                     /translation="GCSSRFPYYMNTYGFHSIHGRAPAIATGIKCANPDLSVWVITGD
                     GDALSIGGNHFIHAIRRNLDINYILFNNRIYGLTKGQYSPTSEFGKKTKSTPSGTIDY
                     PINPLSLAIASESTFVARSIDIDVKHLGAMVEAAAKHKGISFIEVYQNCNIFNDHAFE
                     YFTERSVRSDRVLYLEHGKPMVFGKERNKGIRMNGAHPEIVTIGENGITENDLLVHDI
                     YLKDPSVAFMLARMEQPEFPQPVGIFRAIERPTYEEMMDDQIEAAIAKSGPGNLEKLI
                     NSGDTWVVE"
     gene            903..>1502
                     /locus_tag="VGD38_15135"
     CDS             903..>1502
                     /locus_tag="VGD38_15135"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEY0729412.1"
                     /translation="MNPNKPFVRLFSVFFLAIAITSAALPRPLLAQQATAAKPAADYT
                     AALEVIEKTLDEKRKELGIPGIALAIVKDDQIIYLKGLGYKNLDKKLAVTPDTRFAIG
                     SASKAFTAMLAAMSADAGKLSLDDSPKKFLPYFTLRDQDAAAKITIRDLLAHRSGLNR
                     TDLAMVTGVLNREELIKVAGMAKPTAKLGEKFQYQNVMYA"
BASE COUNT          361 a          472 c          382 g          287 t
ORIGIN      
        1 ggctgctcgt cacgtttccc gtactacatg aacacctacg gcttccacag cattcacggc
       61 cgcgcgcccg caatcgccac cggcatcaag tgcgcgaatc ccgacctgag cgtttgggtg
      121 atcaccggcg acggcgacgc gctctcgatc ggcggcaacc atttcatcca cgctattcgc
      181 cgtaatctcg acatcaacta catccttttc aacaaccgta tctacggtct gacgaaaggc
      241 cagtacagcc cgacgtccga attcggcaag aagaccaagt cgacgccctc gggcacgatc
      301 gactacccga tcaatccgct ctcactcgct atcgcgagtg agtcaacctt cgtcgcgcgc
      361 tcgatcgaca tcgacgtcaa acacctcggc gcgatggtcg aagccgccgc gaagcacaag
      421 ggcatctcgt ttatcgaggt ctaccaaaac tgcaacatct tcaacgacca cgccttcgag
      481 tacttcaccg aacgctcggt tcgttccgac cgagtgctct atctcgaaca cggtaagccg
      541 atggtcttcg gcaaggagcg caacaagggc attcgcatga acggcgctca tcccgagatc
      601 gtcacgattg gcgaaaacgg catcaccgaa aacgatctgc tggtccacga tatctatctg
      661 aaagatccgt cagtcgcgtt catgctcgca cgcatggagc agccggagtt tccgcagcca
      721 gtgggaatct tccgcgccat cgaacgcccg acttacgaag agatgatgga cgatcagatt
      781 gaagccgcaa tcgcgaaatc aggtccggga aatctcgaga aactgatcaa tagcggcgac
      841 acgtgggtcg tggagtaaac cttccacagc agtctcgcgt aagaacaatc cggagaacaa
      901 agatgaaccc caacaagcca ttcgtgcgcc ttttttccgt cttctttctc gcgatcgcga
      961 tcacctcggc tgcactgccg cgcccgctgc tcgcgcaaca ggcaacagcc gccaagcccg
     1021 cggctgatta caccgcggcg ctcgaagtca tcgagaaaac gctcgacgaa aaacgcaaag
     1081 agttggggat tccgggtatc gcgctcgcga tcgtcaagga cgatcagatc atttatctca
     1141 agggcctggg ttacaagaat ctcgacaaga aactggcagt cacacccgac acacgcttcg
     1201 caatcggctc cgcgtcgaaa gctttcaccg ccatgctcgc agccatgagc gccgacgccg
     1261 gcaagctgtc tctcgacgat tcaccgaaga agtttctgcc ttacttcaca ctgcgcgatc
     1321 aagacgctgc ggccaagatc acgattcgcg atctgttggc ccatcgttcc ggtttgaacc
     1381 gtacggatct cgcgatggtc actggcgtgc tcaatcgcga ggagttgatc aaagtcgcag
     1441 gcatggcaaa gccgactgcg aaactcggcg agaagtttca gtatcagaac gtgatgtacg
     1501 cc
//
LOCUS       DASWTX010000993         1919 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_250431, whole genome shotgun sequence.
ACCESSION   DASWTX010000993 DASWTX010000000
VERSION     DASWTX010000993.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1919
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250431"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1461
                     /locus_tag="VGD38_15140"
     CDS             <1..1461
                     /locus_tag="VGD38_15140"
                     /inference="COORDINATES: protein motif:HMM:NF019912.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729413.1"
                     /translation="KATITAKSGTASNTTTVTVVKNDLRSLLVTAGAKTARTGDVVRF
                     SAKGDPASDVAMRWSVSGSGAMIDPHGIFVANAPGTYIVTASSGSVSSSASVVVTPRN
                     LERELTVVGRVPFKEFQGAEQWIIGNYAYYSTISDRFFVYDISDPANPKLTDTIKVDA
                     RLVNDITTTTDGKILVISREGASNRKNGIAFYDTSDPAHPKLISEYTATVTGGVHSAF
                     VDGHYVYLTDDATGSMRVIDFADVKNPKEVGRWQTEHPMVSTVRTKEGDQVAGRYLHD
                     LQVKDGLAYLAYWHDGLVILDVGAGLKGGSPENPKLVSQLRFNHNELYGNGWLAGTHS
                     VFRYRNYVFLGDEVFPGIFDIKSPKRFPIRGIIHVVDVSDINNPRKVAEYPVPEGAAH
                     NMWVENDVMYVGYYSGGGRVVDVSGELRGDLYQQGREIARIWTGDVDAFRPNLPFTWG
                     AQPHNGLIYFNDIHSGLWIVKLGEKIDKGSTTSPGQ"
     gene            complement(1447..>1919)
                     /locus_tag="VGD38_15145"
     CDS             complement(1447..>1919)
                     /locus_tag="VGD38_15145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729414.1"
                     /translation="GGHGSEAPKPGDNSCSPTWAEPSADGASVFVACNASSEIVDINA
                     NTWAVVRRIPARAGVYNLDVTHDRQRLIATNKRDQSVSIYELKSGRELARVPAKRKVL
                     HGVVVSPDDRYAFITVEGIGSEPGTVEIVDLSTLKTVTTLDLPPGAAGIDLLSR"
BASE COUNT          390 a          546 c          594 g          389 t
ORIGIN      
        1 aaagcgacga tcacggctaa gtcgggcacg gccagcaaca cgacgacggt cacagtcgtg
       61 aagaacgacc tgcgcagctt gctcgtgacc gcgggcgcca agaccgcacg caccggcgat
      121 gtggttcgct tcagcgcgaa aggcgatccg gccagcgacg tcgcaatgcg ctggtcagtg
      181 agtggcagcg gcgccatgat cgatccgcac ggtatcttcg tcgcgaacgc gccgggcacc
      241 tacatcgtca cggcaagcag cggaagtgtt tcttcaagcg cgtctgttgt ggtcacgccg
      301 cgcaatctcg aacgcgaact gacggttgtg ggccgcgtgc cgttcaagga gtttcagggc
      361 gccgagcagt ggatcatcgg caactatgct tattactcga cgatctcgga tcgctttttc
      421 gtctacgaca tctccgatcc ggctaatcca aaactgaccg acacgatcaa ggtcgatgcg
      481 cgtctcgtca acgacatcac gacgacgacg gacggcaaga ttctcgtgat ctcgcgtgaa
      541 ggcgcgtcga accggaagaa cggcatcgcg ttctacgaca cgtcggaccc ggcgcatccg
      601 aagctgatct cggaatacac ggcgacggtc acgggcggcg ttcacagtgc gttcgtcgac
      661 ggtcattacg tttacctgac tgacgatgca acgggctcga tgcgcgtgat cgattttgct
      721 gacgtgaaga acccgaaaga ggtcggccgt tggcagactg agcatccgat ggtctcgacg
      781 gttcggacga aggaaggcga ccaggtcgcg ggacgttacc ttcacgatct gcaagtcaaa
      841 gatggcctgg cgtatctcgc ttactggcac gacgggctcg tgattctcga cgtgggcgcg
      901 ggcttgaagg gcggcagtcc cgagaatccg aagctcgtga gccagcttcg tttcaatcac
      961 aacgagctat acggcaacgg ctggctcgcc ggtacgcact cggtctttcg ttatcgcaac
     1021 tacgtctttc ttggcgacga ggtcttcccg ggaatcttcg acatcaaatc gccgaagcga
     1081 tttccaatcc gcggcattat tcacgtcgtc gacgtttctg acatcaacaa tccgcggaaa
     1141 gtcgctgagt atccggtgcc ggaaggcgcg gcgcataaca tgtgggtcga gaacgacgtc
     1201 atgtatgtgg gttactacag cggcggtggc agagtggtcg acgtttcagg tgagctgcgc
     1261 ggcgatctgt atcaacaggg ccgcgagatc gcgcgcattt ggaccggcga tgtagacgcg
     1321 tttcgtccga acctgccgtt cacgtggggc gcgcaaccgc acaatggttt gatctacttc
     1381 aacgatattc actccggatt gtggatcgtg aagttgggcg agaagatcga caaaggatcg
     1441 acgacctcac cgggacagta aatcgatacc agcggcgccg ggcggcaggt cgagagttgt
     1501 gactgttttc aacgttgaca gatcgacgat ctcgaccgtg cccggttccg aaccaattcc
     1561 ttcgacagtg atgaaagcgt aacgatcgtc aggcgagacg accacgccgt gcagcacctt
     1621 tcgcttcgcc ggcacacgcg cgagttccct tccgcttttc agctcgtaaa ttgagactga
     1681 ctgatcgcgc ttgttggtgg cgatgagccg ctggcggtcg tgtgttacgt cgaggttgta
     1741 gacgcctgcg cgcgcgggaa tgcgtcgcac gacggcccac gtgttcgcgt tgatgtccac
     1801 gatctcgctc gaggcgttgc acgcgacgaa gactgaggcg ccgtcggctg aaggttcggc
     1861 ccatgttggt gagcatgaat tatcgccagg cttaggcgct tccgacccgt ggcctcccg
//
LOCUS       DASWTX010000994         2984 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_272840, whole genome shotgun sequence.
ACCESSION   DASWTX010000994 DASWTX010000000
VERSION     DASWTX010000994.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2984
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272840"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..651)
                     /locus_tag="VGD38_15150"
     CDS             complement(<1..651)
                     /locus_tag="VGD38_15150"
                     /inference="COORDINATES: protein motif:HMM:NF012879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEY0729415.1"
                     /translation="MSTMQRLFAVLALLLTLSFGVGAQTPQATPPPPAPPRSGTFPKP
                     AEQTLPNGLRVIVIERRESPLISAQLLVKNGGEADPVELAGLADMTASLLTKGTQSRD
                     ATKIAQEIESLGGSLDSGARWDSSFAQVGVMSTRIPQAMEILADVVRRPTFKSEEVER
                     LRQQYLDNLTLALGDPGSIARFVAARVVFGDSAYGHPLSGTTESLTRITAADITKMH"
     gene            complement(648..2009)
                     /locus_tag="VGD38_15155"
     CDS             complement(648..2009)
                     /locus_tag="VGD38_15155"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY0729416.1"
                     /translation="MLLISARFILSICLLTTFCLAGVAQTRMPQLKYTDRTLANGMRV
                     LAAPDPSSPTVAIQVWYHVGSKDDPDKRSGFAHLFEHIMFKSTKNMKSEMMDRLTEDV
                     GGFNNAFTSDDVTVYFEVVPSNYLETLIWAEADRLSGLNVDDANFKSERDVVKEEYRQ
                     GVLAPPYGKFFYLLQQRSFAAHPYKRPTIGSIEDLDAASLQDVQQFHATYYRPDNATL
                     VVVGDFDPKQLDAWVDKYFAPIPKPNRPLPRVQTKEPARQKEARYTEYGSNDLPAVGL
                     TYLTPKQADADSDALRVADAILSAGESSRLYNQLIYTQQLAAEADSTAETREDVSLFI
                     LLAVLSVGKKPEEAEKSLLAEIKKLQDAPVSAAELDKAKNQIITEQLRQRETSNGKAL
                     ALGEAAVLLGDPARVNTDLARLQAVTAADVQRVMKKYFTDENRMVIYYLPESAKQAKE
                     VGQ"
     gene            complement(2023..2319)
                     /locus_tag="VGD38_15160"
     CDS             complement(2023..2319)
                     /locus_tag="VGD38_15160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729417.1"
                     /translation="MADTSRFTILCPCCEATLTVDAQTGALLAHEAKAKPVASFDEMV
                     KGLDKQKQMREQIFAQELSSMKDRDRILEEKFQEAMKRADKDKDKPYRNPLDID"
     gene            complement(2431..2724)
                     /locus_tag="VGD38_15165"
     CDS             complement(2431..2724)
                     /locus_tag="VGD38_15165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729418.1"
                     /translation="MNTDENVLEATGERVAAAAGFVADKSEDAVGEAADKAEDVGDKT
                     ASGAKKVGSEVADKAEDVSDKTASGAKKVGEKTVEGAKKVGSETKKAVKKVIP"
     gene            complement(2749..>2984)
                     /locus_tag="VGD38_15170"
     CDS             complement(2749..>2984)
                     /locus_tag="VGD38_15170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729419.1"
                     /translation="TVMLAALAAGCSQNQSNANQTANANASPTTTAGPDNSEITTSVD
                     ANGNRVETRTFRDNPRISRVVVTTRDGRRTVRA"
BASE COUNT          551 a          937 c          805 g          691 t
ORIGIN      
        1 gtgcatcttc gtgatgtccg ccgcggtgat gcgcgtcaac gactccgtcg ttccgctcag
       61 cgggtgacca taagcgctat cgccaaacac gactcgcgca gccacaaagc gcgcgattga
      121 acccgggtcg cccagcgcaa gcgtcaggtt gtcgagatac tgctgccgca gccgttcgac
      181 ctcttcactc ttgaacgtcg gccgacgcac gacgtcagcc aggatctcca tcgcctgcgg
      241 aatccgcgtc gacatcacac cgacttgcgc aaacgacgaa tcccaacgcg cgcccgaatc
      301 gagcgagccg ccgagactct cgatctcctg cgcgatcttc gtcgcgtcgc ggctttgcgt
      361 tcctttcgtg agcaggctcg cagtcatgtc cgccaaacct gccaactcaa ccggatcggc
      421 ttcgccaccg ttcttgacca gcagttgcgc agagatcagc ggcgactcac gacgctcgat
      481 cacgatcacg cgcagtccgt tcggcaaagt ctgttcggct ggtttgggaa acgttcccga
      541 acgcggcggc gctggtggcg gaggcgtggc ctgcggcgtt tgcgcgccaa cgccaaacga
      601 aagcgtcaac aacaaggcaa ggactgcaaa caaccgttgc atggtgctca ttggcccacc
      661 tccttcgcct gcttcgcaga ctccggcagg tagtagatca ccatccgatt ctcatccgtg
      721 aaatacttct tcatcacgcg ctgcacatcc gcggccgtga ccgcctgcaa gcgcgcgaga
      781 tccgtgttca ctcgcgccgg atctcccagc aacaccgctg cttcaccaag cgcgagcgct
      841 tttccattgc tcgtctcacg ctggcgcagt tgctccgtga tgatctggtt ctttgctttg
      901 tccaactcag ccgccgaaac gggggcgtcc tgaagcttct tgatctccgc cagcaacgac
      961 ttctccgctt cttccggttt cttgccgacg gacaaaaccg ccagcaggat aaacaagctc
     1021 acgtcttcgc gcgtctccgc agtcgaatcc gcttcggccg ctaactgctg cgtgtaaatc
     1081 aactggttgt acaaccgcga cgactcgccc gccgaaagta tcgcgtccgc gacgcgcaac
     1141 gcatccgaat ccgcatcggc ctgcttcggc gtcagataag tcaatccaac tgccggcaga
     1201 tcgttgctgc cgtattcggt ataacgcgct tccttttgcc gtgccggctc tttggtttgt
     1261 actcgcggca gcggccggtt tggtttgggt atcggagcga aatacttatc aacccacgcg
     1321 tcgagctgct tgggatcgaa gtcgccaacg acgacgagcg tggcgttatc aggccggtaa
     1381 taagtcgcgt gaaactgttg cacgtcctgc agcgacgccg cgtcgagatc ttcaatgctg
     1441 ccgatggtcg gacgtttgta cgggtgtgcg gcgaacgatc tctgctgcag caaatagaag
     1501 aacttgccgt acggcggcgc cagtacgccc tggcgatact cttctttcac cacgtcgcgt
     1561 tccgacttga aattcgcgtc gtcgacattc agacccgaaa gacgatcggc ttccgcccag
     1621 atcaacgtct ccagataatt cgacggcacg acttcgaaat aaaccgtcac gtcgtcgctc
     1681 gtgaacgcgt tgttgaaccc gccgacgtct tccgtgagcc gatccatcat ctccgacttc
     1741 atgttcttcg tgctcttgaa catgatgtgc tcgaagagat gcgcaaagcc gctgcgctta
     1801 tcgggatcgt ctttcgaacc gacgtgatac cagacctgaa tcgcgactgt cgggctggaa
     1861 ggatccggcg cggccagaac gcgcatgccg ttggccagcg tgcggtcggt gtacttgagc
     1921 tgcggcattc gcgtttgcgc gacgccggcc aggcagaagg ttgtaagtaa acaaatgctg
     1981 aggataaagc gggcagaaat caggagcatc tggtttctcc ggttagtcga tatcaagtgg
     2041 gtttcgataa ggcttgtctt tgtctttgtc ggcgcgtttc atcgcttcct gaaacttctc
     2101 ttcgaggatg cgatcgcgat ctttcatcga gctcagttcc tgggcaaaga tctgttcgcg
     2161 catctgtttc tgcttgtcga gccccttcac catctcatcg aacgaagcga ctggtttcgc
     2221 tttcgcttcg tgagcgagca gcgctccggt ttgcgcgtca accgtcagcg tcgcctcgca
     2281 acagggacaa agaatggtaa atcttgacgt atccgccatt agtaaaacct cctcgcaagg
     2341 cggatagtat aacagccacg gaacgagcgc gtctcatgca cgcgttcgtc cgtggctgct
     2401 ttcgtaagcc tggacgctgt gaagcgaacc ttacggaatc actttcttca cggccttctt
     2461 ggtttcgctt ccgactttct tggcgccttc aacggtcttc tcgcctacct tcttcgcgcc
     2521 gctcgcagtc ttgtcgctga cgtcttcagc cttgtccgca acttcgctgc ctactttctt
     2581 cgcgccactc gcggtcttgt cgccgacgtc ctcagctttg tccgcagcct cgccgaccgc
     2641 gtcctcactc ttgtcagcta caaaaccagc cgccgcggct actcgctcgc ctgtcgcctc
     2701 gagaacgttc tcatctgtgt tcacttcgcg ctcttcgcca ctcggagact aagctctcac
     2761 ggtgcggcgg ccgtcgcggg tcgtgaccac gacacgggaa attcgcggat tgtctctaaa
     2821 ggttctggtt tcgactcgat tgccgttagc gtcgacgctg gtcgtgatct ctgaattgtc
     2881 aggaccggcc gtcgtcgttg gactggcgtt cgcgttagca gtttgatttg cgtttgattg
     2941 attctgggaa cagccggccg cgagcgcggc aagcattaca gtca
//
LOCUS       DASWTX010000995         2242 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_272893, whole genome shotgun sequence.
ACCESSION   DASWTX010000995 DASWTX010000000
VERSION     DASWTX010000995.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2242
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272893"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..385)
                     /locus_tag="VGD38_15175"
     CDS             complement(<1..385)
                     /locus_tag="VGD38_15175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729420.1"
                     /translation="MSYVDDIAHDGFAIFEEFLDAGNVSLFLDALANARLETGAENGV
                     YERTKAFGIRNLLNVVPFTRELANSSLCKSLIEPVLGPDARVVRGIYFDKHKDANWKV
                     AWHQDLTIAVRERIDVQGYGPWSLKA"
     gene            555..839
                     /locus_tag="VGD38_15180"
     CDS             555..839
                     /locus_tag="VGD38_15180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729421.1"
                     /translation="MGFGTLAVAASALLMLVVYLPSLYWLKRRRGGTKSRIGFVLLSG
                     LVCNLPVFIILVSLINRKMVLTEALGFMATFLIIGAVFGLGFTWVQSEAK"
     gene            985..1356
                     /locus_tag="VGD38_15185"
     CDS             985..1356
                     /locus_tag="VGD38_15185"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0729422.1"
                     /translation="MNNILVVDDSPTMRRMVITSLGSLQRVKSSQAGSGLEAIERLAI
                     EPVDLMVLDLNMPDMHGMEVIDFVRKHQAYRDIPIVVLTTKGEESSRNQALAAGATRY
                     LTKPFDPRQLADVVGSLLKAS"
     gene            1356..>2242
                     /locus_tag="VGD38_15190"
     CDS             1356..>2242
                     /locus_tag="VGD38_15190"
                     /inference="COORDINATES: protein motif:HMM:NF013767.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HEY0729423.1"
                     /translation="MDTPTPDNRGEFFDQFLDDYYAECDEHLVSIRRALVTFEDEVDA
                     GTVDRALLDNLFRSFHTLKGISGMVGLAAAEQLAHHLESYLRELREGTLSVSESGFDE
                     LVVGVSLLENVINARRNDQPIPSIDDVVERLQAVSVSSSSAPSKSEPRAVDAPATRWQ
                     VEFTPTAELSERGVNVNSVRARLQEIGELLQAKPIVKGAGEIAFQFVLATNRNQTELK
                     DFEADGLVFEAVQEEKKTRETLPVPTIAPASVVRVDLDRLDELMRIIGELVISRTRLD
                     DQVAELKRVTPPAVWRSLQ"
BASE COUNT          483 a          636 c          635 g          488 t
ORIGIN      
        1 cggctttgag ggaccagggg ccgtagcctt ggacgtcgat gcgttcgcga acggcgatgg
       61 tcagatcctg gtgccaggcg actttccagt tcgcgtcttt gtgcttgtcg aagtagatgc
      121 cccgcacgac gcgcgcatca ggtccaagga ccggttcgat aagcgacttg cacaaagagc
      181 tgttcgccaa ctcgcgagtg aaggggacca cgttgaggag gtttctgatg ccaaacgcct
      241 tcgtgcgctc gtagactccg ttttctgctc cggtttcgag cctggcgttt gccagtgcgt
      301 cgagaaataa agagacgttt ccagcgtcca ggaactcttc gaaaattgca aaaccgtcgt
      361 gtgcgatgtc gtcgacgtag ctcattctca acagaaaagg atgttaataa acaaccgcgc
      421 tcagcgtgaa gtcagtaatg aagataatca aactcatcgt gaccgcgatc gccgcctagg
      481 cctttggcct cgcgttcatc gcaaccacgc tttacttcac caacgacggc gcggatttta
      541 cggccacgga tctcatgggc ttcggcacgt tagccgtggc ggcgtcggcg ctgctgatgc
      601 tggtggtgta tttgccgagt ctgtattggt tgaagcgaag acggggtggg acgaaatcgc
      661 ggattgggtt tgtgctgctg agcggattgg tgtgcaacct gccggtgttc atcatcctcg
      721 tgtccttaat taatagaaag atggttctca ccgaggcgct cgggttcatg gccaccttcc
      781 tcattatcgg cgccgttttt ggactcggat tcacgtgggt acaaagcgaa gccaaataaa
      841 ggcctcagtt ttgtcgaatc ctttactttc ccgtacaatg agcctcccct gacctgattt
      901 tcccctggtt tgccaatgga ttcccccgaa tccccggcta aatcccagct tgaagtgtct
      961 ttgcaagtgt ccgataagct caagatgaac aatattctag tcgtcgacga ctcacccacg
     1021 atgcgacgca tggtgatcac gtcgctcggc tcgctgcaaa gagtcaaatc ttcccaggcc
     1081 ggcagcggcc tcgaagccat cgaacgcctc gcgatagaac ccgtcgacct catggtgctc
     1141 gatctcaata tgcccgacat gcacggcatg gaggtcatcg acttcgtccg caaacaccag
     1201 gcctatcgcg atattcccat cgtagtcctg acgaccaaag gcgaagagag cagccgcaac
     1261 caagccctgg ccgccggcgc aacccgttat ctaaccaagc ctttcgatcc gcgacagttg
     1321 gccgacgtcg tgggctcgtt gctgaaagcg agttgatgga tacgccaacg cccgacaatc
     1381 gtggtgagtt cttcgatcag tttctcgacg attactacgc cgagtgtgac gagcaccttg
     1441 tctcgatccg gcgcgcgctg gtcacgttcg aagacgaagt cgacgcaggc acggtcgatc
     1501 gcgcgctgct cgacaatctg tttcgcagtt tccacacgct caaaggcatc tcgggcatgg
     1561 tcggtctcgc cgccgccgaa cagctcgcgc atcatctcga aagctacctg cgcgagttgc
     1621 gcgaagggac gttgagcgtc agcgagtcgg gatttgacga actcgtggtc ggtgtctctt
     1681 tactggaaaa cgtcatcaac gcgcgccgca acgatcaacc tattccgtcg atcgacgacg
     1741 ttgtggaacg actgcaagcc gtttccgtta gttcgtcgtc cgctccttca aagtctgaac
     1801 cacgcgcagt cgatgcacca gctacacgtt ggcaggttga gtttacgccg acggcggaac
     1861 tctccgaacg cggcgtgaac gtgaacagcg tgcgcgcgcg gttgcaagag atcggtgaat
     1921 tgctccaggc gaaaccgatc gtcaaaggcg cgggagagat cgcgtttcag ttcgtccttg
     1981 cgacaaacag gaaccagacg gagctcaaag atttcgaagc agacggattg gttttcgaag
     2041 ctgttcagga agagaagaag accagagaaa ccctgccggt gccgacgatc gctccggcca
     2101 gcgtcgtgcg cgtcgatctc gatcggctcg acgaactgat gcgcatcatc ggcgaactcg
     2161 tgatcagccg cacgcgtctc gacgatcaag tagcagagtt gaaacgagtg acaccgccgg
     2221 ccgtgtggcg ttcgctacag ga
//
LOCUS       DASWTX010000996         4488 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_185354, whole genome shotgun sequence.
ACCESSION   DASWTX010000996 DASWTX010000000
VERSION     DASWTX010000996.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4488
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185354"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1194)
                     /locus_tag="VGD38_15195"
     CDS             complement(<1..1194)
                     /locus_tag="VGD38_15195"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY0729424.1"
                     /translation="MVSSARQAIACIFAIICIAVTANAQNTPVKEPGGTITGKVTVKG
                     KGAPGITVVLLPSERRTRREYSGPRAVTDDDGNYRIVNVTPGSYRVIPVARVYVPAEN
                     ADREKVLIVNKGDTIEHIDFTMIRGAVITGKVLDAEGRPVVEEGVSVFTDSENRNYAA
                     SSSMTDDRGVYRIYGLYPGSYRVAAGRDESMSGVLRPHSRTYHPSASDPAQATVVELS
                     EGGEAKDVDITFSRKIPTYTARGRVVDGDTGQPLANVDYGITRIEKNGSSSRTGGHRT
                     NSRGEFKIENLSPGTYSIPVSSGADNDLRFEEAPFEIVDQDVNGLVVKGNRGGSISGV
                     VVFEGVDDGKTREQIDHWWVMASVEGPPGQPKFTSGKIASDGSFQLRGLAGGTLTFSI
                     HSERQV"
     gene            complement(1432..2232)
                     /locus_tag="VGD38_15200"
     CDS             complement(1432..2232)
                     /locus_tag="VGD38_15200"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEY0729425.1"
                     /translation="MKRAASILPLLLLLSVTCFAQNGVTTKVDDYIRAEMKAQQIPGL
                     SLAVINNGEIVLARGYGLANIEHQAPVKPETIFQSGSIGKQFTATAIMLLVEDGKLSV
                     DDNITKYIANSPESWNKITVRHLLTHTSGMGDYPKDFDMRRDYTEDDLVQMIKTVPLA
                     FQPGEKYSYSNLAYVMLGVLIRKVSGKFYGDFLQERVFKPLDMSTARVISEADIVVNR
                     AAGYRVVNGQLKNQNWVSPSLNTTADLNAEGVVEFQPGVGGYDNPGKL"
     gene            2367..2675
                     /locus_tag="VGD38_15205"
     CDS             2367..2675
                     /locus_tag="VGD38_15205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729426.1"
                     /translation="MSVLQVQVAVYGALCGGPDQMHARDVTAQLQAALNSKTNNGVVN
                     INNDSMGGDPCSGKTKAFGAVVTLDGTPLFFACLEGQTVDFFHSTTGLVAEKAEGAKG
                     "
     gene            complement(2729..3976)
                     /locus_tag="VGD38_15210"
     CDS             complement(2729..3976)
                     /locus_tag="VGD38_15210"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEY0729427.1"
                     /translation="MNVLVLNCGSSSVKFQLIATDLERIEHDADKRLAHGLIERIGGA
                     GIVTFTAEGQPPKRSAEPIRDTRAAVEMILRWTISEESGVNEIRSVADIHAVGHRVVH
                     GGEQFAKSVLITDEVLRAIEDCIELAPLHNPANIQGIVAARTALGAALPQVAVFDTAF
                     HQTLPEHAFLYALPYQLYRRHRIRRYGFHGTSHRYVAYRYRKLRGIARDATNIITLHL
                     GNGCSIAAIKNGDSIDTSMGFTPLEGLVMGTRSGDLDASIVDLIATKEGLSSREVETL
                     LNKQSGLLGISGLTDDMRELLAEAQEHDDRRARLAIEIFCYRARKYIGSYLAAMNGAE
                     AIVFTGGIGENSAEIRARICADLTWLGVELDAERNAKHGADDSGQISSDTSRAAVFVL
                     PTNEELLIARDAVRVVSGTPQRF"
     gene            complement(3980..>4488)
                     /locus_tag="VGD38_15215"
     CDS             complement(3980..>4488)
                     /locus_tag="VGD38_15215"
                     /inference="COORDINATES: protein motif:HMM:NF020920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729428.1"
                     /translation="VVMACAGDVPVLETLAAVDILRQRFPELKIRVINVVNLMTLQPQ
                     SEHPHGLSDKEFDALFTINKPVIFAFHGYPWLIHRLTYRRTNHGNLHVRGYKEEGTTT
                     TPFDMVVLNDLDRFHLVMDVIDRVPKLETIGAHLLQEMRDRRFEHKRYIAEHGEDMPE
                     IRDWKWPY"
BASE COUNT          917 a         1266 c         1268 g         1037 t
ORIGIN      
        1 cacctggcgc tcggagtgga tcgagaaagt taacgtgccc cctgctaagc ctctgagctg
       61 aaaactgcca tccgatgcga tctttcctga tgtaaatttc ggttggccgg ggggtccttc
      121 aaccgatgcc attacccacc agtgatcgat ctgttctcgc gttttgccgt catccacacc
      181 ttcaaaaaca accacgccgg aaatgcttcc gcctctgttg cctttaacta ccagaccatt
      241 gacgtcctga tcgacgatct cgaacggcgc ttcttcaaac cgcagatcgt tatcggcacc
      301 gctggatacc ggaatgctgt atgttcccgg cgacaggttc tcgatcttga attctccgcg
      361 gctgttcgtg cggtggccgc cagtgcggct ggatgagcca ttcttttcga tccgcgttat
      421 gccgtaatcg acatttgcga gcggttggcc cgtgtctccg tcaacaactc ggccacgcgc
      481 cgtgtaggta gggattttgc ggctaaacgt gatgtcgacg tccttcgctt caccaccctc
      541 gctgagttcg acaacagttg cctgtgcagg atcgcttgcg gatggatgat acgtgcggct
      601 gtggggccgc agcactcctg acattgattc gtctcgtccg gccgcgactc gataactgcc
      661 gggatataaa ccgtagatac ggtaaacgcc gcgatcgtca gtcatggaac tagatgcggc
      721 atagttcctg ttttcggaat ccgtaaacac ggagacacct tcttcaacta ccggacggcc
      781 ctcggcgtcg aggactttcc ccgtgatcac cgcgccgcga atcattgtga aatcgatatg
      841 ctcgatcgtg tcacccttgt taacaatcag gactttctcg cggtcggcgt tttctgccgg
      901 aacgtaaacc ctggcgaccg gtatcacccg atagctgccg ggagtcacgt tgacgatgcg
      961 atagtttccg tcgtcgtccg taactgccct tgggccactg tactcccggc gagtccttcg
     1021 ttcgcttggg agcagcacga cagtgatgcc cggagcacct ttgcctttga cagttacttt
     1081 gccggtgatt gttccacccg gctctttgac gggagtgttt tgcgcgttcg ccgttacggc
     1141 gatacagatg atcgcgaaga tacaggcaat tgcctggcga gctgaggaca ccataaggga
     1201 gtctcgcctt tcctgggaga gcggcaataa tagcgcaagc aagcggcttt gtctttattt
     1261 ttgcgccctt ggtggtgtcc taacctgaac gccgaaggcg tttactaact tcagcccagt
     1321 ggttgcttca accctgggat caagtaagac ggaaggacca acgccaaagg tgttggcaag
     1381 tcgtcgccgc ggtaagtcgc caacgctttc agcgtttaca acgacaattg gttaaagttt
     1441 cccagggttg tcgtaaccgc caaccccggg ctgaaactcg acaacgcctt cggcgttcag
     1501 atcggcagtg gtattcaacg acggcgacac ccagttctgg ttcttcagtt gtccattgac
     1561 gacgcgataa cccgccgcac gattcacgac gatgtcggct tcgctgatca cgcgcgcggt
     1621 cgacatgtcc aacggcttga agacgcgctc ttgcaggaag tcgccgtaaa acttgccgct
     1681 gactttgcga attaacacgc cgagcatcac gtaagcgaga ttgctgtagc tgtacttctc
     1741 gccgggttga aacgcgagtg gaaccgtctt gatcatttgg accaggtcgt cttccgtgta
     1801 gtcacggcgc atatcgaaat ccttcggata gtcgcccatg ccgctggtgt gcgtgagtaa
     1861 atgacgcacc gtgatcttgt tccaactttc cggactgtta gcgatgtact tcgtgatgtt
     1921 gtcgtcgacg ctgagctttc cgtcttcgac gagcagcatg atggccgtgg cggtgaactg
     1981 cttaccgatc gagcctgatt gaaagatcgt ttccggtttg acgggcgcct gatgctcgat
     2041 gttcgcgagg ccgtagccac gcgcgagcac gatctcgcca ttattgatca ccgcgagcga
     2101 cagtcccggg atctgctgcg ccttcatctc cgcgcgaatg taatcgtcga ctttggttgt
     2161 gacgccgttc tgcgcgaaac aggtgacgga caggagaagt aacagcggga gtatcgatgc
     2221 ggcgcgtttc atagcgcgca tttagccact ggtgatcgat ttttcgcaac agaaatttgt
     2281 ggcgcatggt ggttcctggg ccgggttctc gcgtttatag gtgtagcgaa ttaaatactc
     2341 tgaactcacg attggaggaa aatctcatga gtgttttaca ggtgcaggtt gcagtttacg
     2401 gtgctctctg tggagggccg gaccagatgc acgcgcgcga tgtaacggcc cagttgcaag
     2461 cggcgttgaa ttccaagaca aacaatggcg tcgtcaacat caacaacgac agcatgggcg
     2521 gtgatccgtg cagcggaaaa accaaagcct tcggcgctgt ggtgactctc gacggcacac
     2581 ccctgttttt cgcctgtctg gaaggtcaaa cagtcgactt cttccattcc acaacgggtc
     2641 ttgtggcgga aaaagcggaa ggcgcgaagg gataagcgcc cccggaaggg taacgcctcc
     2701 gccgtgagcg gcagcggagg cgttgccttt aaaatcgctg aggtgtgccg ctcacgacgc
     2761 gcaccgcatc acgcgcgatc aataactctt cattcgtcgg gagaacaaaa accgcggcgc
     2821 gcgacgtgtc ggaactgatc tgaccactat cgtcagcgcc gtgctttgca ttgcgttccg
     2881 catcgagctc gactccgagc cacgtcaggt cagcgcagat cctggccctg atctccgcgg
     2941 agttttcacc tattccaccg gtgaacacga tcgcctcagc gccgttcatc gccgcgagat
     3001 aactgccgat gtatttacgt gcgcggtagc agaagatctc gatcgccaga cgcgctcgac
     3061 gatcgtcgtg ctcctgggct tcggccagca actcgcgcat gtcgtcggtc agtcccgaga
     3121 tgccgagcaa gcctgattgc ttgttgagca gggtctcgac ttcacgtgac gacaatcctt
     3181 ctttcgtggc gatcagatcc acgatcgacg catcgagatc gccggaacgt gtgcccatca
     3241 cgaggccttc aagcggtgtg aaccccatcg aggtgtcgat actgtctccg tttttgatcg
     3301 cggcgatgga acagccatta ccgagatgca gtgtgatgat gttcgtcgcg tcgcgcgcga
     3361 ttcctctcag tttgcgataa cgataagcga cgtagcgatg cgaggtgccg tgaaaaccgt
     3421 agcggcgaat gcgatggcgg cgataaagct gatacggcaa cgcgtagaga aacgcgtgtt
     3481 cgggcagcgt ttgatgaaac gcggtgtcaa acaccgcgac ttgcggcagc gcggcgccta
     3541 atgccgtgcg cgcggcgacg atgccttgaa tgtttgccgg attgtgtagc ggcgcgagct
     3601 cgatgcaatc ttcaatcgcg cgcaacacct cgtccgttat cagcactgac ttggcgaatt
     3661 gttcgccgcc gtgcaccaca cgatggccca ccgcgtgaat atccgcaaca ctacggatct
     3721 cattcacgcc cgactcttcg gagatggtcc agcgaagaat catttctact gccgcacgcg
     3781 tgtctctgat cggctcggcc gaccgcttcg gcggttgacc ttcggcagtg aacgtcacga
     3841 tacccgcgcc gccgatacgc tcgatcagcc cgtgtgcgag gcgcttgtcg gcgtcgtgct
     3901 cgatgcgctc gaggtcagtg gcgattaatt gaaatttgac tgatgagctg ccgcagttga
     3961 gaacgagtac gttcatggtt cagtagggcc acttccaatc gcgaatttcc ggcatgtcct
     4021 cgccatgctc ggcaatgtag cgtttgtgct cgaaacgtct atcgcgcatc tcctgcaaca
     4081 ggtgcgcgcc gatggtttcg agcttcggca cgcgatcgat aacgtccatc accagatgaa
     4141 agcgatcgag atcgttcagc actaccatat caaaaggcgt ggtggttgtg ccttcttcct
     4201 tgtaaccgcg cacgtgcagg tttccgtggt tcgtccggcg gtaagtgagc cggtgaatca
     4261 accacgggta accatgaaaa gcgaagatga cgggtttgtt gatcgtgaac agcgcgtcaa
     4321 actctttgtc tgacagtccg tgcgggtgtt cgctctgcgg ctgcagcgtc atgagattca
     4381 ccacgttgat aacgcggatc ttcagctccg gaaagcgctg ccgaagtata tcaaccgcag
     4441 ccaatgtttc gagcacgggc acatcaccag cgcaagccat aacgacgt
//
LOCUS       DASWTX010000997         2005 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_409752, whole genome shotgun sequence.
ACCESSION   DASWTX010000997 DASWTX010000000
VERSION     DASWTX010000997.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2005
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_409752"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..379)
                     /locus_tag="VGD38_15220"
     CDS             complement(<1..379)
                     /locus_tag="VGD38_15220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729429.1"
                     /translation="MKVLLFALLFCIAATGASVSAQTVAFTNVNVIPMDRERVLANQT
                     VVVKNGLITEIGDAKKVKLPKDVVRIDGTGKYLIPGLVDMHTHLLSDSNEFPDSIGPD
                     ELRVMVANGVTTVRFMIGTPELLA"
     gene            589..>2005
                     /locus_tag="VGD38_15225"
     CDS             589..>2005
                     /locus_tag="VGD38_15225"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HEY0729430.1"
                     /translation="MPLAQTLGQVRTTPDAAASKRAADLLAKMTLDEKIGQLNQLFYF
                     TQLMRPEMMEPAIREGKVGSLLFVTDPAIINRFQKVAVEQSRLKIPLLFGFDVIHGFR
                     TVFPVPLAMASSWDPALVERAQTIAAREARAAGIRWTFAPMVDIARDPRWGRIVEGAG
                     EDPYLGAKMSAAQVRGFQGTDPSAPCRLLACMKHFAGYGAADGGRDYDSAYLSDSQLY
                     NVYLPPFKAAVDAGVGSAMSAYMNLNDVPATGNAFLLRDVLRKEWGFKGFVVSDADSV
                     GNLVTHGFAADKADAAVRALTAGVDMEMSLPRSPVATAYADSLANLVKEGRVTTAQID
                     TSVRRILEAKFKLGLFDNPYVDESAVSSHHNNPEHRQLARIAAQRSTVLLRNEGNLLP
                     LTKGDPRVSSIAVIGPLGDSKRDMRGPWTLADDRKTAVTVVEGIREKVGPGVKVEYAQ
                     GADIGRAYPSIFALFGGPRPAP"
BASE COUNT          414 a          586 c          592 g          413 t
ORIGIN      
        1 gggccagcaa ttcgggtgtt ccgatcatga accgcacggt cgtgacgccg ttcgccacca
       61 tcacgcgaag ctcgtctggt ccaatcgaat cggggaactc attgctgtcg gacagcaggt
      121 gcgtgtgcat atcgacgaga cccgggatca ggtacttccc ggtgccgtcg atccgcacga
      181 catccttcgg cagcttcact tttttcgcgt cgccaatctc ggtgatcaga ccgttcttca
      241 ccaccaccgt ctggttcgcg agcacacgct cacgatccat cgggatcacg ttgacgttgg
      301 tgaacgcaac ggtttgcgcc gaaacggacg ctccagtcgc ggcaatacaa aaaagtaaag
      361 cgaacaaaag gaccttcatt gaagtttctc cgagattagt gtgggctacc gataaattaa
      421 caccgccact tgctctgtta agtcaaaaga tcgtaaaagt cgagcgtgcg aacgcgtcct
      481 gtcgtattgg agacgcaaaa acgaaagccg gcacaaaccg ctgaccacgc cttttaaagg
      541 acaacaatgc gcaaactgaa ctgtcttctc ctgatagtgt gtctattcat gccgctcgcc
      601 cagacgttgg gacaggttcg tacgacgccc gacgccgcgg cctcaaaacg cgccgccgat
      661 ttgttggcga agatgacatt ggacgagaag atcggccaac tcaaccagct cttctatttc
      721 acgcagttga tgcggcccga gatgatggag ccggccatcc gcgaaggcaa ggtcggatcg
      781 ctactcttcg tcaccgatcc cgcgatcatc aatcgattcc agaaagtcgc ggtcgagcaa
      841 tcgcgattga agattccgct gctgttcggc ttcgacgtca ttcacggctt tcgcacggtt
      901 tttcccgttc cactcgcgat ggcttcgtcg tgggatccgg cgctggttga acgcgcacag
      961 acgatcgcgg cgcgcgaggc acgcgcggcc ggaattcgct ggacgtttgc gccgatggtc
     1021 gacatcgcgc gcgacccgcg atggggacgc attgtcgaag gcgcgggaga agatccgtat
     1081 ctcggcgcga agatgtccgc cgcgcaggtg cggggctttc aggggacgga cccgtccgct
     1141 ccgtgccgtt tgctcgcgtg catgaaacac ttcgccggct acggcgctgc cgacggcggc
     1201 cgcgattacg actctgctta tctcagcgat tcgcagctct acaacgttta tcttccaccg
     1261 ttcaaagccg cagttgacgc gggtgttgga agcgcgatgt cggcctacat gaatctcaac
     1321 gacgtgcctg cgaccggcaa tgcgtttctc ctgcgcgatg tcttgcggaa ggagtggggc
     1381 ttcaagggat tcgtagtgag cgatgcggat tcagtcggca acctggttac acacggcttc
     1441 gcggcggaca aggctgacgc tgccgtgcgt gcgctcacag cgggcgtgga tatggaaatg
     1501 tctctgccgc gcagcccggt cgcaacggcg tatgccgaca gtctcgcgaa ccttgttaag
     1561 gaagggcgcg ttacgaccgc gcagatcgat acttctgtgc gtcgaatttt ggaagctaag
     1621 ttcaaactcg gactctttga caatccttac gtcgacgagt cggcagtttc gtcacatcac
     1681 aacaatccgg agcatcggca actcgcgcgc attgccgcgc agcgctcgac ggtgttgttg
     1741 cggaacgagg gcaacctgct accgctcacg aaaggcgacc cgagagtttc gtcgatcgcc
     1801 gtcattggac cactcggaga ctccaagcgc gacatgcgcg gtccgtggac tctggctgac
     1861 gacaggaaga cagcagtcac tgtagtcgaa ggcattcgcg aaaaggttgg cccaggtgtg
     1921 aaggtcgagt acgcgcaggg agcagatatc gggcgggcgt atccctcaat tttcgcgcta
     1981 ttcggtggcc cgcgtcccgc gccgt
//
LOCUS       DASWTX010000998         2430 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_207160, whole genome shotgun sequence.
ACCESSION   DASWTX010000998 DASWTX010000000
VERSION     DASWTX010000998.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2430
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207160"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..784)
                     /locus_tag="VGD38_15230"
     CDS             complement(<1..784)
                     /locus_tag="VGD38_15230"
                     /inference="COORDINATES: protein motif:HMM:TIGR02772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045027 - DNA end binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HEY0729431.1"
                     /translation="MAARAIWKGQLKVGTTKIPVKLYSAVEDKTVRFHILDDKNKARV
                     KQHMVDPDSGEEVPSEEIQKGYEVEPGKFVILTEEDLEKLAPPPSRDIEIVEFVPQAE
                     IREQWYDRPYYLGPDDGDKDYFALVEALNNKKSEGIAQWVMRSKYYAGGLRPVDDYLF
                     LFTLRDANEVILADQLTKPAGAAPTQKELNMATQLVDMLKGEFNPKDYKDEYRKRVME
                     FIKQKAKGRAPRLRAVKTKRQTADLGNVLEKSIAALKKKEKRA"
     gene            complement(1019..1252)
                     /locus_tag="VGD38_15235"
     CDS             complement(1019..1252)
                     /locus_tag="VGD38_15235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729432.1"
                     /translation="MTLDQQVDDKGTDQEEARRMLTALRDRGFDGDNEQVATALGRSI
                     EQVQGWIDGTETIDDDVVMKAKGIALNRGIGLG"
     gene            complement(2172..>2430)
                     /locus_tag="VGD38_15240"
     CDS             complement(2172..>2430)
                     /locus_tag="VGD38_15240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729433.1"
                     /translation="YGSTTGFSTIVWNREFYTLGLDEQALMTLHESLHLFANFTDFAI
                     ADAAHMMATRNRNNRGTPGNFNSRDAASNYINERIGTHCRP"
BASE COUNT          509 a          671 c          606 g          644 t
ORIGIN      
        1 cagcgcgttt ctccttcttc ttcagtgccg cgatactctt ctcgagcacg ttgccgagat
       61 ccgcggtctg gcgtttggtc ttcaccgctc gcagacgcgg agcgcgtccc ttggcctttt
      121 gcttgatgaa ctccatcacg cgtttgcgat actcgtcttt gtaatccttc ggattgaact
      181 cacccttgag catgtcgacg agctgcgtcg ccatgttcaa ctctttctgc gtcggcgcgg
      241 cgcccgcggg cttcgtcagt tggtccgcga gaatgacttc gttcgcatcg cgcaaggtga
      301 aaagaaacag gtaatcgtct accgggcgca gtccgccggc gtaatacttg ctgcgcatca
      361 cccactgcgc gatgccttca ctcttcttgt tgttgagcgc ttcgacgagc gcgaaataat
      421 ccttgtcgcc gtcgtctggt ccaaggtagt aaggccggtc gtaccattgc tctctgatct
      481 cggcctgcgg cacaaactcg acgatctcga tgtcgcgcga cggcggcggc gcgagttttt
      541 cgagatcctc ttcggtgagt atcacgaatt ttcccggctc gacttcgtag cccttctgga
      601 tctcttcgga cggcacttct tcgcccgaat cgggatcgac catgtgttgc ttcacgcgcg
      661 ctttgttctt gtcgtcgagg atgtgaaagc ggacggtctt atcctcgacc gccgaataga
      721 gtttgacggg aatcttcgtc gtgccgacct tcaattggcc cttccagatt gcgcgggccg
      781 ccattagcgt ttttgctcct tttctgtcga gcgtgcggtc tcacacccgt gacacagcaa
      841 ctcgatggaa acggtttcct gtacgcatac tgaacagacg ttagcgtcac aatcgagaca
      901 gtacgtgccc gtttgatatg cgtacgactg gtgacacgac gaacagattt cagtgtcacc
      961 ttcaaaccac cacggcgtct gttgttgttt ggcgcgcgtc agtttgtgaa ccctccgttt
     1021 atccaagccc gatgccgcga ttcagcgcga ttcctttggc cttcatcacc acgtcgtcgt
     1081 cgatggtttc agtaccgtcg atccatccct ggacctgctc gatggacctt ccgagcgctg
     1141 tcgcgacttg ttcattatca ccgtcaaacc cacgatcgcg aagcgccgta agcatacgtc
     1201 tcgcttcttc ctgatcggtt cctttatcgt caacttgctg gtcgagcgtc atcacacact
     1261 cctgcctttg gtttctgttc tgttccaaat cacctcaatg ttgccggagg gacttagcgc
     1321 aaactaagtg ccagaactga tctcgccggt gatgagaata tgattgacct caaggccgac
     1381 gctaagactg tcgtgtgctt aagcttcgat gagagggttc ggcttctcgt ttcgtcggct
     1441 tctgaattta gaactcgtca tgggcggcga caccgcgtat agataaagct ttgttcgtcg
     1501 ggcgattctc cgcgctgagt cgcagggata tccgctgccg gataatccgc tttgtagggg
     1561 tgttcaattt tccttgatat cgtcaacgcc tagaacgcag tgcattagcc ggtaggtcgt
     1621 caaagaaaaa gtaaactcga tgaattactc cacctatgcc tgtaccgatt gatttgctac
     1681 tttcccagga gtaactaaac gggacggcga ggttataacg tcgcttgaaa tggttaatag
     1741 gaactgagaa tgtgaccgat tgacccggcg gaatctcgta aacaaagacc gagtctcccc
     1801 aaccgtacgc ccgttctggc tcacgccggg gtttgatctg gatcaagtaa tgtagtcgaa
     1861 gccttactcc atctcgcgca tcgagcaccg gttcaattcg cacgcctttc tgaggtagct
     1921 tcgtgagttg agttggatac tgatcatctg tttcaacaac aattgcgcaa ctgctgttgt
     1981 ttcgtagacg caaatagatt tcggactcca acttattttc gtaggctata aactgcgccg
     2041 gccgaccggg atcgagcaga aagcatccac tcttgctaga cgaacgatct tgagcgtagt
     2101 ttactccccc cattagggac aacagaatca acgctgatac agtttgccaa agcgacataa
     2161 ctcagcctca attaaggtcg acagtgagtt ccaatccgtt cgtttatata gttcgaagcg
     2221 gcgtctcgac tattaaagtt gccgggagta ccgcgattgt ttctattgcg cgtcgccatc
     2281 atatgggcgg cgtccgcaat cgcaaaatcc gtaaagtttg caaaaagatg gagtgactca
     2341 tgaagggtca tcaacgcctg ctcatctaaa cccaaagtat agaactctcg attccagaca
     2401 attgtgctaa aacccgttgt tgaaccatac
//
LOCUS       DASWTX010000999         2021 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_424563, whole genome shotgun sequence.
ACCESSION   DASWTX010000999 DASWTX010000000
VERSION     DASWTX010000999.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424563"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            155..700
                     /locus_tag="VGD38_15245"
     CDS             155..700
                     /locus_tag="VGD38_15245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729434.1"
                     /translation="MMSYVKTSAALVMVLLLASHVVHAKGDDFNSVVKMIEQFYGVKH
                     VGIPFLAKAGMKVARTAARIKGGEARRIAETGSIKLAVFESQDFNGEFAKFRSTLNAA
                     LNQTWSPLVQTLSATDGEQVYIFMREAGEKFNVLVITIAQRDATVVQVTLSPKNLALL
                     MKDPEGTGKAITEEATIIDQE"
     gene            705..1940
                     /locus_tag="VGD38_15250"
     CDS             705..1940
                     /locus_tag="VGD38_15250"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0729435.1"
                     /translation="MNRHRLSFVLLIVIAAIASLPVRAQEVEETIRIKTRVVFLDALV
                     KDKKTNLPISNLTQDNFEVLDDGKPRPISYFTREGEARKPLALILALDLRLDGAGRFL
                     KQPEILKAMENELAKLPPGDEVAILAMNIGEDEQAVWLSEFTNDRAKIAAALTRVQQI
                     CENPGAELPEVAAQKPAESSKPAGNPNEVVSTEVIKGRNGATITRTTMGDGSVRVKRT
                     NKKGDITVDMGDMYDLSAAVRDATRKAQALRPNSQVSLVWVSDGIVPIFFEDRDATEE
                     IIIRDNVIFNSLTVELRTLFKFLLPIGKPIAGWVGLSIYGSAKHLAQRSGGEAVKVGR
                     VKDYGAGLSRIIGNLTARYSLGFTLAENETDDGRMHQLEVRVKAKDEKGKKRKLLVTS
                     RQGYYMAEGKPREATVRAQ"
BASE COUNT          470 a          546 c          625 g          380 t
ORIGIN      
        1 tgctcagcag cgatattcgc gagttgactg tcgtgaatat cgtcgggccg gttgacctcg
       61 acaaactcgc gaaactcgaa ggacagtttg gcatccccga gctcgacata gcgccaacca
      121 aaccgaaaac gaagaacgac gagaagtgag gcccatgatg tcttacgtca aaacgtccgc
      181 tgcgcttgtc atggtgctct tgctggcgtc gcacgtggta cacgcgaaag gtgacgactt
      241 caattcggtc gtgaagatga tcgagcagtt ctacggcgtg aagcatgtcg ggattccgtt
      301 tctggcgaaa gcgggaatga aagtcgcgcg caccgcggcg cggatcaaag gcggtgaagc
      361 gagacgcatc gccgagacgg gcagcatcaa gctcgccgtg tttgagagtc aggatttcaa
      421 tggtgagttc gcgaagtttc gcagcacgct gaatgccgcg ctcaatcaga cgtggtcgcc
      481 gctcgtgcaa acactctccg cgactgacgg agaacaggtt tacatcttca tgcgcgaggc
      541 tggagagaag ttcaacgtgc tcgtgatcac aattgcgcag cgcgacgcga cggtggtcca
      601 ggtcacgctg tcgccgaaaa atctcgcgct gttgatgaaa gatcctgaag gtacgggaaa
      661 ggccatcacc gaagaagcaa cgatcatcga tcaggagtag ccccatgaat agacatcgcc
      721 tcagctttgt gttgctcatc gtcatcgccg cgatcgcttc gctgccggtt cgcgcgcagg
      781 aagtcgaaga gacgattcgg atcaagacgc gcgtggtgtt tctcgacgcg ctggttaaag
      841 acaagaagac gaacctgcca atatcgaatt tgacgcagga taactttgaa gttctcgacg
      901 acggcaagcc gcggccgatc tcttacttca cgcgcgaagg cgaagcgcgt aagccactcg
      961 cgctgatcct cgcgctcgac ctgcgtttgg acggcgccgg gcggttcctg aagcaaccgg
     1021 aaatactgaa ggcgatggaa aacgaactgg cgaagcttcc gccgggtgac gaagtcgcga
     1081 tcctggcgat gaatattggc gaggatgaac aagcggtatg gctcagcgag tttacgaatg
     1141 accgggcgaa gatcgcggcc gcgctgacgc gagtgcagca gatctgtgaa aacccgggcg
     1201 ctgagctgcc ggaagtagcc gcgcaaaagc cggctgagag ttccaagccc gccggcaatc
     1261 ccaacgaagt cgtgtcgacg gaagtaatca aaggccgcaa cggcgcgacg atcacgcgca
     1321 cgacgatggg cgacggatcg gttcgcgtca aacgcacgaa caagaagggt gacataaccg
     1381 ttgacatggg cgacatgtac gacctgtccg ccgccgtgcg cgatgcgacg cgcaaggcgc
     1441 aagcgcttcg acccaactcg caagtgtctc tcgtgtgggt gtctgacggc atcgtgccga
     1501 tcttctttga ggatcgggat gccacagaag agataatcat tcgggacaac gtgatcttca
     1561 attcgctcac tgttgaattg cgcacgttgt tcaagtttct cttgcccatc gggaaaccga
     1621 ttgcggggtg ggtcggactg agtatttacg gcagcgcgaa gcatctcgcg cagcgttcgg
     1681 gtggcgaggc ggtgaaggtt gggcgtgtaa aggattacgg tgcgggtctc tcgcgcatca
     1741 tcggcaacct gaccgcgcgc tacagtctcg gcttcaccct ggcggaaaac gaaaccgacg
     1801 acggccgcat gcaccagctc gaagtgcgcg tcaaagcgaa ggacgagaaa ggcaaaaagc
     1861 gcaaactcct ggtcacctcc cgccagggct actacatggc ggaaggcaaa ccccgcgaag
     1921 caaccgtgcg cgcgcagtag cgtatggctg cgcggaggtt cgcttttgct gcggcgacgt
     1981 ttgcttcttt tcgtgagaca tcgttctgag ttcaagcttc a
//
LOCUS       DASWTX010001000         2624 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_57918, whole genome shotgun sequence.
ACCESSION   DASWTX010001000 DASWTX010000000
VERSION     DASWTX010001000.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2624
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57918"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(10..696)
                     /locus_tag="VGD38_15255"
     CDS             complement(10..696)
                     /locus_tag="VGD38_15255"
                     /inference="COORDINATES: protein motif:HMM:NF012720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HEY0729436.1"
                     /translation="MSTEAQAGHFPAVDWQGGAFPYRVGHRKLGMWLFIVSDSLTFSA
                     LLIGYSYLRASNVWPTPFPFYPSIVFSSVMTFCLLSSSLTMVFGVSASSKGDKAKARK
                     WILLTIVFGVAFIVLHLIEWQHLMHQGLRPFYLPESWVQAFSHNGVPPSPLFGATFFA
                     ITGLHMFHVLTGAIYLLVVALRINKLKHEDVEISGLYWHFVDLVWMFVFPLIYIMSVD
                     IGGHLAAVPH"
     gene            complement(700..1365)
                     /locus_tag="VGD38_15260"
     CDS             complement(700..1365)
                     /locus_tag="VGD38_15260"
                     /inference="COORDINATES: protein motif:HMM:NF012720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HEY0729437.1"
                     /translation="MVSTRPARKSSPGGGPPKFPGPNGNGSKPHDGFRDPESQANRYR
                     IGMWVGLASVAMMFTSLSSAYIVRSASANDWVTLPMPKVLLASTAFILGSSVTIEIAR
                     RKLKAALNEPYTKWLLITVLLGAGFVLAQIMAWRQLTRQGIYLVSNPHSSFFYLLTGA
                     HAVHLFGGLVGLTFLWLRSRRRLTEAVPIAKRKAATDAVSIYWHFMDALWIYLFLLLF
                     LWR"
     gene            complement(1352..>2624)
                     /locus_tag="VGD38_15265"
     CDS             complement(1352..>2624)
                     /locus_tag="VGD38_15265"
                     /inference="COORDINATES: protein motif:HMM:NF012343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HEY0729438.1"
                     /translation="ISIAIFCVGSLLGALNFITTLLNMRTKGMSLMRMPLTCWAWFTT
                     AVLALLSFPVLLGGGILLLLDRIAGTSFFIPGGLNFSGVLSGSSPNFPLHTGGSPILW
                     QHLFWFFGHPEVYIAILPGMGATSHILATFARKPVFGYRAMVFAIFAIGLLGFFVWGH
                     HMFISGMSPYSAIAFSVLTLSIGVPSAVKTFNWIGTLWGGRIRFTTAMLFSIGFVSLF
                     VAGGITGLILGQSSLDLPMHDTYIVPAHFHLVMGVASIFGMFAAIYFWFPKMFGRLMS
                     ESIGRIHFWITFVGVYAIFVPMHVMGLQGMPRRYSQFTEYEFLASLHPLVLFVSISAI
                     ITIGAQFLFYFNVFWSMFKGEKASENPWEATTLEWNTPSPPPHDNFAGVLPVVHHGPY
                     EFAVPGAPRDYVMQTDVDVEVPSGNGHNGKH"
BASE COUNT          662 a          773 c          746 g          443 t
ORIGIN      
        1 ccagttggat tagtgcggga ccgcggccag gtggccaccg atatccactg acatgatgta
       61 gatcagcggg aacacaaaca tccagacgag atcgacgaag tgccagtaca agccactgat
      121 ctcgacgtct tcgtgtttga gcttattgat ccgcaacgca acgactaaca ggtagatcgc
      181 accggtcagg acgtggaaca tgtgcaaacc cgtgatcgcg aagaacgtcg cgccaaagag
      241 cggcgacggc ggcacgccat tatgcgaaaa cgcctgcacc cagctttccg gcagatagaa
      301 cggacgcaaa ccctggtgca tcaggtgttg ccactcgatc aagtggagca cgataaacgc
      361 gacgccgaag actatcgtca gcaggatcca cttccgcgcc tttgccttgt cgcctttgct
      421 cgacgccgac acgccaaaca ccatcgtcaa gctcgacgac agcaggcaga acgtcatcac
      481 cgacgaaaag acgatgctcg gatagaacgg aaacggcgtc ggccagacgt ttgacgcgcg
      541 cagatagctg tagccaatga gcagcgcgga aaacgtcaac gagtcggaaa cgatgaacag
      601 ccacattccc agcttgcgat ggcccacgcg atacggaaag gccccgccct gccaatcgac
      661 tgcgggaaaa tggcccgcct gtgcttcagt gctcacctgt cacctccaaa ggaataggag
      721 taggaatagg tagatccaaa gtgcgtccat gaaatgccag tagatcgaaa ctgcatcagt
      781 cgctgccttg cgtttggcga tcggtactgc ttcggtcagg cgccggcgcg aacgcagcca
      841 cagaaacgtc aaacccacga gcccgccgaa taagtggacc gcatgcgcgc ccgtcagcag
      901 ataaaagaac gagctgtgtg gattgctcac gagataaatt ccctgccgcg tgagttgccg
      961 ccacgccatg atctgggcca acacgaaacc ggcgccgagt aataccgtga ttagcagcca
     1021 cttcgtgtag ggctcattca gcgcggcctt caattttcgc cgcgcgatct cgatcgtcac
     1081 gctgctgccg agaataaacg cagtgctggc cagcaagact ttcggcatcg gcaacgtcac
     1141 ccagtcgttt gcggaagcag accggacgat gtacgcactg ctcaacgacg taaacatcat
     1201 cgcgaccgac gcgagtccga cccacatgcc gatgcgataa cgattcgcct gcgactcggg
     1261 gtcgcgaaaa ccgtcgtgcg gtttcgaacc attaccgttt ggtccaggaa attttggtgg
     1321 accaccaccc gggctcgatt ttcttgccgg tctagtgctt accattgtgg ccattaccgc
     1381 ttggcacctc gacgtcgacg tcagtctgca ttacgtaatc cctgggcgcg ccgggcaccg
     1441 caaattcgta tggaccgtga tggaccaccg gcagcacgcc cgcgaaattg tcatgtggcg
     1501 gtggcgaagg agtgttccac tcgagcgtgg ttgcctccca cggattttcg ctggccttct
     1561 cgcccttgaa catgctccag aacacgttga agtagaacag gaactgcgcc ccgatcgtga
     1621 tgattgccga aatcgagacg aacagcacga gcgggtgcaa cgacgcgagg aactcatact
     1681 cggtgaattg cgagtagcgg cgcggcatac cctgcaagcc catcacgtgc atcggcacaa
     1741 agatcgcgta cacgccgacg aacgtgatcc agaagtgaat gcggccgata ctttcgctca
     1801 tcaggcggcc aaacatcttc gggaaccaga aatagattgc cgcaaacatg ccgaagatcg
     1861 acgcgacgcc catcaccagg tggaagtgcg ccggcacgat gtaagtgtcg tgcatcggca
     1921 ggtcgagcga gctctggccg agaatcaatc ccgtgatacc gccggcgacg aacagtgaaa
     1981 cgaagccgat tgagaaaagc atcgccgtgg tgaaacgaat gcgtccgccc cacaatgtgc
     2041 cgatccagtt gaaggtcttg acggctgaag gaacgccgat ggaaagcgtc aacactgaaa
     2101 acgcgatcgc cgagtagggg ctcatgccgc tgatgaacat gtggtggccc cacacgaaga
     2161 aaccaagcag tccgatcgcg aagatcgcaa acaccatcgc gcgataacca aaaaccggtt
     2221 tgcgtgcgaa cgtcgcgaga atgtgcgacg tcgcgcccat gcccggcagg atcgcgatgt
     2281 agacttccgg atggccgaag aaccagaaca ggtgctgcca cagaatcggc gaaccgcccg
     2341 tgtgtaacgg gaagtttgga ctgctgccgg aaagcacgcc gctgaaattg agtccgcccg
     2401 gaatgaagaa gctcgtgccc gcgatacgat cgagcagcag caggatgccg ccaccgagca
     2461 acaccgggaa cgacaacaac gccagcaccg cggtcgtaaa ccacgcccag caggtcaacg
     2521 gcatgcgcat cagcgacatg cctttcgtgc gcatgttcag cagcgtggtg atgaagttca
     2581 acgcgcctaa caaagagccg acgcagaaga tcgcgatgct gatg
//
LOCUS       DASWTX010001001         1673 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_273020, whole genome shotgun sequence.
ACCESSION   DASWTX010001001 DASWTX010000000
VERSION     DASWTX010001001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1673)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1673
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273020"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..181)
                     /locus_tag="VGD38_15270"
     CDS             complement(<1..181)
                     /locus_tag="VGD38_15270"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0729439.1"
                     /translation="MLLSVIIPCFNEEAVLRATHERLTSVLSGMDQRYELIFIDDGSR
                     DNTQQILAELQLFDPH"
     gene            complement(261..1079)
                     /locus_tag="VGD38_15275"
     CDS             complement(261..1079)
                     /locus_tag="VGD38_15275"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY0729440.1"
                     /translation="MTTLAEEKVRAREQWGQDPCGAEYVRDHELGTREFFDSVEQHRY
                     QQYAPWMPRVMGFDQFRGARLLEIGCGMGTDLLQFARGGAYCTGIDLTPRHVEITRHR
                     FALYGAPGNFMLADGEQLPFASGSFDVVYSNGVLHHTPDTQGAIREVHRVLTPGGTAK
                     VMLYHRHSLNYWFEIILRRGLLGGEFLRGRSAEEIMSRVIEFSDHDARPLVKVYSRKQ
                     ARALFSQFREVNVEVEQLTREELRFFSGAVSDKTFKALSKRFGWNVIITARKSL"
     gene            complement(1089..>1673)
                     /locus_tag="VGD38_15280"
     CDS             complement(1089..>1673)
                     /locus_tag="VGD38_15280"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0729441.1"
                     /translation="VLGFSSRDLVAGFVGTFGPWHGVVQLAEAIKLVPESVPLRFVFV
                     GSGSLREQVEGILRNEIEARRVVFTGAVAHERVPALLDACDILVAPHVPLADGSDFFG
                     SPTKIFEYMAMGKAIVASRLGQIGEVLSDEETALLVEPGNINELAAALVRVAESSELR
                     KRLGPNAREAAVQNHTWGHNARRVLEAYDSWALE"
BASE COUNT          373 a          543 c          411 g          346 t
ORIGIN      
        1 tgtgtggatc gaagagttga agttcggcaa ggatctgttg cgtgttgtcg cggctgccgt
       61 cgtcgatgaa gatcagttcg tagcgttggt ccattccgct gagcacgctc gtgagccgct
      121 cgtgcgtcgc gcgcagcacg gcctcttcgt tgaaacaggg aatgattacc gacagcagca
      181 ttcgtcttgt ttactcaaag cgctcttagt tctgagttcc gcctttaggc gggtcttttc
      241 ggacaagcta aagcttgaac tcaaagcgac tttctcgcgg tgatgatgac gttccagccg
      301 aagcgcttgc tcagtgcttt gaacgttttg tctgaaaccg cgcccgagaa aaaccgcagc
      361 tcttcacgcg tgagctgctc gacttctaca ttgacttcgc gaaactgact gaacagcgcg
      421 cgcgcttgtt tgcggctgta gaccttcacc agcggccgcg cgtcgtgatc gctgaattca
      481 atcacgcggc tcatgatctc ttccgccgaa cgtcctctca gaaactcgcc acccaacagt
      541 ccacgccgca gaataatctc aaaccagtag ttaagcgagt ggcgatgata gagcatcact
      601 ttcgccgtgc cacccggcgt cagcacgcgg tgcacctcgc gaatcgcgcc ctgcgtgtcg
      661 ggcgtgtggt gcaggacgcc gtttgaatac accacatcga aagaccctga agcaaacggc
      721 agttgttcgc cgtcggcgag catgaagttt ccgggcgcgc cgtagagcgc gaagcggtgg
      781 cgagtgattt caacgtggcg aggcgtcaga tcgataccgg tgcaataagc accgccgcgc
      841 gcaaactgca acaggtccgt gcccatgcca cacccgatct ccagcaagcg cgcgccgcga
      901 aactggtcaa accccatcac acgcggcatc cacggcgcgt attgctgata ccggtgctgc
      961 tctacgctgt caaaaaactc gcgcgtccca agctcgtgat ctcgtacgta ctccgcgcca
     1021 cacggatcct gtccccactg ctcccgcgct cttacttttt cctcagccag tgtggtcatt
     1081 acgaaatctt attcaagggc ccacgagtcg tacgcttcga gcactctacg tgcattgtga
     1141 ccccaagtat gattctgtac cgcagcttca cgcgcgtttg gaccaagacg cttgcgaagc
     1201 tcgcttgact cagcaacacg cacgagcgcc gcagcgagtt cattgatgtt acccggttca
     1261 actaacaacg ccgtctcctc atcactcaac acttcaccaa tctgccccag acggctcgcg
     1321 acgatggcct tacccatcgc catgtactca aagatttttg tcggcgaacc aaagaagtca
     1381 ctgccgtcag cgagcggcac atgaggcgcg accagaatat cgcacgcatc caacagcgcc
     1441 ggcacccgtt catgcgccac cgcacccgta aaaactacgc gccgcgcttc aatctcattt
     1501 cttaaaatcc cctccacctg ttctcgcaaa ctcccactac cgacaaacac aaaccgcaac
     1561 ggcacgcttt ccggaaccaa cttgatcgcc tcggcaagct gcacgacacc gtgccacggt
     1621 ccaaacgtac ccacaaaccc agcgaccaaa tccctgctac taaatccaag gac
//
LOCUS       DASWTX010001002         1792 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_168718, whole genome shotgun sequence.
ACCESSION   DASWTX010001002 DASWTX010000000
VERSION     DASWTX010001002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1792
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168718"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..783
                     /gene="groEL"
                     /locus_tag="VGD38_15285"
     CDS             <1..783
                     /gene="groEL"
                     /locus_tag="VGD38_15285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004585059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEY0729442.1"
                     /translation="NVAAVKAPGCGDRRKDMLQDIAVLTGAKVINEELGIKLESVMVE
                     ELGSAMKVTIDKEATTIIGGGGDRNALQGRVKTLKAQIENATSDYDREKLQERMAKLV
                     SGVAIIRVGASTETELKEKKARVEDAMHATRAAVEEGIVPGGGVAFIRAAKALNKFTL
                     SETDHEDEQIGVNIVKRALEEPLRQIAGNAGKEGAVIVERIRSEKNQNIGYNVITEEF
                     EDLVTAGVIDPAKVTRVALQNASSIAGLMITTEVLISETHHQ"
     gene            complement(988..1632)
                     /locus_tag="VGD38_15290"
     CDS             complement(988..1632)
                     /locus_tag="VGD38_15290"
                     /inference="COORDINATES: protein motif:HMM:NF024934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY0729443.1"
                     /translation="MLDFQQVLIEPNKEITEVYFPYDAITSTIQEMSDGDAVETGLMG
                     LEGFVGVQVWLHSRTTPTRTFVQVAGKGYHMSARDFIKHVRDTDSPLNELCAKYVHGF
                     LNMTSQTAACNRLHPVNERLCRWLKLVHNRVRRDEFAMRQEFMALMLGVHRPTVSIAA
                     RMLQEAGLISYSRGQMRILDADGLRNGSCECLELIEKQFDQIFLIPNNDRSTST"
BASE COUNT          441 a          476 c          507 g          368 t
ORIGIN      
        1 aacgtcgctg ccgtcaaggc gcctgggtgt ggcgatcgcc gcaaggacat gttgcaggac
       61 attgccgtac tgactggcgc aaaggtcatc aacgaagagc ttggaatcaa actggagagc
      121 gtcatggttg aagagctggg ctcggccatg aaggtgacga tcgataaaga agctaccaca
      181 atcatcggcg ggggcggcga tcgcaatgca ttgcaaggcc gcgtgaaaac actcaaggcc
      241 caaatcgaaa acgcgacttc cgactatgac cgcgagaagc tgcaggagcg catggcgaaa
      301 ctggtgagtg gcgtcgcgat cattcgcgtc ggagcgtcaa ccgaaaccga actcaaagag
      361 aagaaagccc gcgttgaaga cgcgatgcac gcgacccgcg cggcagttga agaaggtatc
      421 gtgcccggtg gcggtgtggc ttttatacga gccgcgaagg cactcaacaa attcacgctg
      481 tctgagaccg accacgagga cgagcaaatc ggcgtcaaca tcgtgaagcg cgcgcttgaa
      541 gagccgttac ggcagatcgc cggcaacgca ggcaaggaag gtgcagtcat cgtcgaaaga
      601 attcgatccg aaaagaacca gaacattggc tataacgtga tcaccgaaga gtttgaagac
      661 cttgttaccg ccggcgttat cgatcccgcg aaggtaactc gtgtcgcgtt acaaaacgct
      721 tcgtccatcg cggggttaat gatcacaacc gaagtgctga tttcggaaac tcatcatcaa
      781 tgaatggtct gcgaatttat tctcagttgc agtcagccgg ttcttctttg ggggacgaga
      841 cgttttacag ccggcgagcc gatggtccgt attatgagtg gcgatatgaa aagggccgtg
      901 ggcgctggat ggtctcgcgc atcaacgcca tcaacgtatc cgcgaaagat ttcgcgttaa
      961 cgccgtggaa gagcgtaccc gacgcgctca agttgaggtt gagcgatcat tattcggaat
     1021 aagaaagatc tgatcaaact gtttctcgat caactccaga cactcgcaac ttccatttct
     1081 caacccgtca gcatcaagga tccgcatttg tccgcggctg tagctgatta gccctgcctc
     1141 ttgcagcatc cgcgcggcaa tggacacggt cggccggtgt acgccgagca tcagggccat
     1201 gaattcctgc cgcatcgcaa actcatcccg gcgaacccgg ttatgcacca gcttgagcca
     1261 gcggcagagg cgttcattta ccggatgcag ccgattgcac gcggcggtct gcgaagtcat
     1321 gttcaaaaac ccatgaacgt acttcgcgca gagttcattc aaaggtgaat ccgtatcgcg
     1381 tacgtgcttg ataaaatccc gcgcggacat gtgatagccc ttgcccgcta cctggacgaa
     1441 cgttcgcgtc ggcgtcgttc gcgaatgtag ccagacttgc acgccgacaa agccttcgag
     1501 ccccatcaac ccggtttcta ccgcgtcgcc gtcagacatt tcctggatag tcgaagtaat
     1561 tgcgtcgtaa ggaaaataga cttccgtgat ctctttgttc ggctcgatga ggacctgctg
     1621 gaaatccagc acgacctctt taagataggg tgacagtctc tcccgctctg cgtcaggcaa
     1681 agaggcgagc aacaggtttt cgtttcgtga tggatgggcg gacttgtcca gcgtattaac
     1741 ctcctatagg tcgcgtgtac aaacacagca gacggcataa ggaggtcgtt gc
//
LOCUS       DASWTX010001003         2279 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_11939, whole genome shotgun sequence.
ACCESSION   DASWTX010001003 DASWTX010000000
VERSION     DASWTX010001003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2279)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2279)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2279
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11939"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..392)
                     /locus_tag="VGD38_15295"
     CDS             complement(<1..392)
                     /locus_tag="VGD38_15295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729444.1"
                     /translation="MPDWLDCLQPHEIETAYVADYTNDAGHPAFVFSKLQGGRFYRFA
                     YADNTEFVVDHQGREIWTTWPEPLTLEDTATYLLGPVMGFVLLLRGLVSLHASAIVVD
                     GAAIALVGPAGAGKSTTAAAFSARGFSVL"
     gene            complement(514..690)
                     /locus_tag="VGD38_15300"
     CDS             complement(514..690)
                     /locus_tag="VGD38_15300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729445.1"
                     /translation="MARTPETDQPRNPDQRKKPYHKPEVIVYGNIREITRNAGPKGAL
                     DNGGGAAAGPKTGA"
     gene            complement(711..>2279)
                     /locus_tag="VGD38_15305"
     CDS             complement(711..>2279)
                     /locus_tag="VGD38_15305"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HEY0729446.1"
                     /translation="IVNVDGAPVDRDLPWNDQNVGFFQQPFTLDGSVWLIADARIDGR
                     ELLADEETILHAYEKFGENCVDHLIGDFAFAIWDQRSRRLFCARDHFGVKPFFFARAG
                     KSFMFSNALNTLRRDSRVSDALNENAVGDYLAFGLNQDLTTTIFRDIQRLPAGHTLSL
                     ANGAITTRRYWAPTVKNEIRFRHQQSYVDRFNELFTTAIKDRLRTERVSISMSGGLDS
                     TAIAVIARDLLPQTGSVQGFTTVYDELIPDEERHYSTLAASSIGVPIHHLSADKYGLF
                     AGELNQPEPFLISPLGGQFNDLMRMMADNAPVALTGYDGDALMNEPTGVRPLWARIRR
                     MKKRPIRVEYPKWIEESFATRIDLKQRWHEPHIVDKRRPATLRALQSKVWAPLLEGYD
                     GSVTRLPLEVRHPFMDVRVVEYLLSIPVKPWCVNKHILRCAMRDRLPAAVVDRPKTPL
                     AGDPALQLWRRGGVRWLDNFEVTPQLTRFVDLKVRRSLAEEETPNALWANLRLFALNH
                     WLAHSLPLDRRMVA"
BASE COUNT          494 a          646 c          651 g          488 t
ORIGIN      
        1 agcacactga atccgcgcgc tgaaaacgct gccgccgtcg tcgactttcc cgctcccgct
       61 ggtccaacca acgcgatcgc ggcgccgtcg acaacgatcg cgctcgcatg cagcgagaca
      121 agcccgcgaa gcagcaacac aaaacccatc accggcccga gcagataggt cgccgtatct
      181 tcgagcgtga gcggttccgg ccacgtggtc cagatctcac gaccctggtg gtccaccaca
      241 aactcggtgt tgtccgcgta agcaaaacga taaaacctgc cgccctgcag cttcgaaaag
      301 acgaaagcag gatgaccggc gtcgttcgtg tagtctgcga cgtacgccgt ttcgatctcg
      361 tgaggctgca aacagtcgag ccaatcaggc aagactccga aagagacacg aacatccgcg
      421 gttgtaatcg gtgtgtgggg gacggtggga atcggtctgt tggctagaac ttcgagacca
      481 tagatcgagc acccgtaatg catcgttgct ggatcaggcg ccggtctttg gtccagcggc
      541 cgcgccgccg ccgttgtcga gagctccctt cgggcccgcg ttgcgagtga tctcgcgaat
      601 gtttccgtaa acgatgactt caggtttgtg gtagggcttt ttgcgttggt cgggattgcg
      661 tggctgatcg gtttctggtg tccgtgccat caatttctcc tcgaattgaa ttacgcgacc
      721 attcgtcgat cgagcggcag agaatgtgcg agccaatggt tgagtgcaaa caaccggaga
      781 ttggcccaga gtgcgttggg agtttcttcc tccgccagcg atcgccgaac tttcaaatca
      841 acaaaacgcg ttagttgcgg tgtgacctca aaattgtcga gccatcttac accaccgcgc
      901 cgccacaact gaagagcggg atcgcccgcg agcggagtct ttggtcgatc gactacggcg
      961 gcaggtagtc gatctctcat cgcacagcga aggatgtgct tgttcacaca ccacggtttc
     1021 acgggaatcg acagcagata ctcgacgacc cgcacgtcca tgaacggatg acgcacttcg
     1081 agtgggagtc gggtcacgct tccgtcgtaa ccttccaaca gcggcgccca aactttcgac
     1141 tgcaatgcac gaagcgtcgc gggccttcgc ttgtcgacaa tgtgtggttc atgccaccgc
     1201 tgtttcaaat cgatccttgt cgcaaacgac tcctcgatcc actttggata ctcaacacga
     1261 atcggccttt ttttcatccg tctgattctc gcccaaagcg gcctcacccc agtcggctcg
     1321 ttcatcaacg cgtcgccgtc gtaaccagtc aacgcgacgg gcgcgttgtc ggccatcatt
     1381 cgcatgagat cgttgaactg tccgccgagt ggcgagatca ggaaaggctc cggttggttc
     1441 agttcgcctg caaacaagcc gtatttgtcg gcgctgaggt gatgaatcgg aacaccgata
     1501 ctcgacgccg cgagcgttga atagtggcgc tcttcgtcgg gtattaattc gtcgtaaaca
     1561 gtcgtaaatc cctgaacgct gccggtttga ggcaacaggt cgcgggcgat cacggcgatg
     1621 gcggtcgaat cgagaccacc gctcatcgag attgaaacgc gttcggttcg gaggcgatct
     1681 ttgatagctg tcgtgaacag ctcgttgaat cgatctacat aagactgctg gtggcgaaag
     1741 cggatctcgt ttttgaccgt aggcgcccaa tagcggcgcg tggtaatcgc gccgtttgcg
     1801 agtgaaagcg tgtgtcccgc cggaagccgt tgaatgtcgc gaaagatcgt ggtcgtcagg
     1861 tcctggttca aaccaaacgc gagatagtcg ccgacagcgt tttcgttcag cgcgtctgag
     1921 acccgactgt cgcgacgcag cgtgttcagt gcgttactga acataaagct cttgccggcg
     1981 cgcgcgaaaa agaatggctt cacaccgaag tgatcgcgcg cgcaaaagag acgtcgtgaa
     2041 cgttgatccc aaatggcaaa agcaaagtcg ccgatgaggt ggtcgacaca gttttccccg
     2101 aacttttcat acgcgtggag gatcgtttcc tcgtcggcta atagctcgcg gccgtcaatt
     2161 cgcgcatccg cgatcaacca aaccgagcca tcgagtgtga aaggttgttg gaagaacccg
     2221 acgttttgat cgttccacgg cagatcgcga tcgaccggtg cgccatcgac gttaacgat
//
LOCUS       DASWTX010001004         2685 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_298514, whole genome shotgun sequence.
ACCESSION   DASWTX010001004 DASWTX010000000
VERSION     DASWTX010001004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2685
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298514"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            130..717
                     /locus_tag="VGD38_15310"
     CDS             130..717
                     /locus_tag="VGD38_15310"
                     /inference="COORDINATES: protein motif:HMM:NF025675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcxB family protein"
                     /protein_id="HEY0729447.1"
                     /translation="MQPIQVKFTHTEAEYLAATRLLLLGHKVLLARVVVILVLVIFGI
                     VMISLLGDFAFPLWAALALGTLVAASFAYAGLIDAPRRFFRKDPKMRDEFLLTFSDEG
                     VTVKTAQIDSKLAWSLYKGVVENKSVYVLLYNDPARMSMTMVPKRVFRDASEELEFRR
                     LVHRQVDQSLALTNESVADQTYAYVPSKLEPPDWR"
     gene            complement(1299..2042)
                     /locus_tag="VGD38_15315"
     CDS             complement(1299..2042)
                     /locus_tag="VGD38_15315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729448.1"
                     /translation="MMNLEAMTDHNICGSSSVRSPRLSSMDLSAKRRAKGRSEGGYTL
                     VALLALMSVVALVAMAAAPRVQQQAQREREKEAIFRGEQIADAIRQYYIYTSQVKRLP
                     GEQALPSSIEDLLDGLPKPGGSKSLQILRASAARDPLTLDGEWRFVRPRSQALTEFQQ
                     SIMFYTGNFVPQPRDGQLVQLQQLAVPPIASMTNFGTRPTQNNSSTADDVSSGPFIGV
                     ASRSKNDSVLTYYGIERHDQWIFTPLFRN"
     gene            complement(2029..>2685)
                     /locus_tag="VGD38_15320"
     CDS             complement(2029..>2685)
                     /locus_tag="VGD38_15320"
                     /inference="COORDINATES: protein motif:HMM:NF013955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IPT/TIG domain-containing protein"
                     /protein_id="HEY0729449.1"
                     /translation="YNAPEAQRNIFAYFVPKPKPSPVIQQPTPSPPPPPPLLLASLSP
                     SNVYARSADFKLEVAGDKFTPSTKIYFDGRELQTTYISPQQLAANVSATLIAAPGSRN
                     IVVRTADNSLFSAPLMMTVAAPPVPNYVYVGIISPNNRVDDVAIVQDKSNKNIMNVHR
                     GDLLSGRFRVTSISDKELVMMDTNLKIPHKLAMTEGDKSFSNPLTRPTPRVESEDDEP
                     "
BASE COUNT          564 a          711 c          756 g          654 t
ORIGIN      
        1 ggaatttcgg gttctaccag agcaactgag accatacgtt tgaccacgaa agcgcaacca
       61 gggcgtttcg ttctgtgtta tcgtaactac cgccctaccc tcactcgatt atcttcagcg
      121 agtcacctta tgcaaccaat acaagtaaag tttacccaca cggaagcaga ataccttgcc
      181 gcgacgcggc tactactact cggccacaag gtcctcctgg cgcgggtggt cgtcattctg
      241 gtgctggtca tcttcggcat cgtgatgatc tcgctgctcg gggacttcgc gtttccgctc
      301 tgggctgcac tggcgcttgg cacgctcgtc gctgcgtcgt tcgcctacgc cgggctcatc
      361 gacgcgccgc gaaggttctt ccgtaaggat ccgaaaatgc gcgatgagtt cctgctgacg
      421 ttctcggacg agggcgtcac ggtgaagact gcgcagatcg attcgaaact ggcgtggagc
      481 ctgtacaagg gcgtagtgga aaacaagtcc gtgtacgttc tcctgtacaa cgacccagca
      541 cggatgtcga tgacgatggt gccgaagcga gtctttcgcg atgcgagtga agagttggaa
      601 ttcagaagat tagtgcaccg gcaagtggat cagagtctcg cgctgacgaa cgagagtgtg
      661 gccgatcaaa cttacgcgta cgtcccgtcg aagttggagc cacctgattg gcgctgacaa
      721 aacaactcgc gagccacaac aaaaagaaac gacgagcttc gcttgaaggt ctcgtcgttt
      781 cttttgtaag gccccgaagg cctcagatgt ttgtgtgcgc cagtggaagg tacgtgctgt
      841 gacctgctgg ttcgggttat ctcttctttg cggcggcttt cttcgtgccc ttctttgcgg
      901 ccttcttggt gcccttcttc gctgctttct ttccaccttt tttagttgcc atagcttcta
      961 tgtgctcctt ctttcgagat tagtttttgt ttcttcatga ccacaagata ctgtgcttac
     1021 ttctgtcttg tgggctagag taaacggcgc acaacatctt gctatataaa cgcaaatacc
     1081 tccgatgtca ataacttatt actcgatcac aaaaaatatt tttcgcgtgt tgagtgcgag
     1141 ttgagcgccg gttgagaagc tcgctcgcgc gatcgagagg tctctcttca agctggtcca
     1201 cctcacagga acagacaaag aagtgccgac tgatttgcga gtggtgctca gttgggatca
     1261 ggtggagaaa ggatgaaacg cgacgaggtg gtccaactct agttgcggaa caacggagtg
     1321 aagatccatt gatcgtgacg ctcgatgccg tagtaagtca gcactgaatc attcttactt
     1381 cgactcgcaa cgccgatgaa tggaccactc gaaacatcgt ccgcagttga tgaattattc
     1441 tgcgtcggac gcgttccgaa atttgtcatg ctggcgatgg gaggaacggc taactgctgt
     1501 aattgcacga gttgtccgtc gcgtggttga ggaacgaagt taccggtgta gaacattatc
     1561 gattgctgaa actccgtcaa cgcttgcgat cgtggacgaa caaaacgcca ctcaccgtcg
     1621 agtgttaatg gatcgcgcgc ggctgatgcg cgaaggatct gcagactctt cgatccgcct
     1681 ggcttcggta gaccatcaag caagtcttcg atcgaagatg gtaatgcttg ttctcctggc
     1741 agacgcttta cctgtgaggt gtagatgtaa tactgacgaa tcgcatcggc gatctgttcg
     1801 ccgcgaaaga tagcttcctt ctctcgttca cgctgtgctt gttgctgcac tcgaggcgct
     1861 gcggccatgg caaccaaagc gacgacactc atcagcgcga gcaaggcgac cagggtgtac
     1921 ccgccctcag atcgtccctt cgctcgtctc ttcgcgctca gatccatgct cgagagccgc
     1981 ggcgaacgca cggagctcga cccgcatata ttgtggtcgg tcattgcttc aaggttcatc
     2041 atcttcagac tcaactcgcg gcgtcggacg cgtcaaagga ttgctgaaac tcttgtcgcc
     2101 ttcggtcatc gcgagcttgt gcgggatctt cagattcgtg tccatcatga ccagctcttt
     2161 atccgagata ctggtcacac gaaaccttcc gctcaacaag tcaccacgat gcacgttcat
     2221 gatgttcttg ttgctcttgt cctgaacgat cgcgacgtcg tccacgcgat tgttcggact
     2281 gatgatgccg acgtagacat agttgggaac aggcggcgcc gcgacagtca tcatgagcgg
     2341 cgccgagaag agactgttgt ccgcagtgcg cacgacgatg ttgcgcgaac ccggcgcggc
     2401 gatcagcgtc gcggaaacgt tggccgcgag ttgctgcggg ctgatgtaag tcgtctggag
     2461 ttcgcgcccg tcaaaataga tcttcgtcga cggcgtaaac ttgtcgcctg caacctccag
     2521 cttgaagtcc gcgctgcgcg cgtagacgtt cgacggagag agtgaagcga gcagcaacgg
     2581 tggcggcggt ggcggcgacg gcgtaggttg ctggatgacg ggcgacggtt tcggtttcgg
     2641 cacgaagtac gcgaagatgt ttcgctgtgc ttccggcgcg ttgta
//
LOCUS       DASWTX010001005         2959 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_168798, whole genome shotgun sequence.
ACCESSION   DASWTX010001005 DASWTX010000000
VERSION     DASWTX010001005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2959
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168798"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..317)
                     /locus_tag="VGD38_15325"
     CDS             complement(<1..317)
                     /locus_tag="VGD38_15325"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0729450.1"
                     /translation="MPSNSSFAQFSIFRLALAIAFALAAAVSVYSQGVLPGSSRGNPT
                     TGSGNNTIQGRVHFPSGQTTGTVKVNLESTSSFGASSSTATDQDGVFRFNGLEPGNYT
                     VVV"
     gene            complement(350..1003)
                     /locus_tag="VGD38_15330"
     CDS             complement(350..1003)
                     /locus_tag="VGD38_15330"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0729451.1"
                     /translation="MIHLQLKRGTTTKAGVVNAALAEVPERARKLFEKGLEHARAGDA
                     QRAAESLKQAVDLHPNFPIALNELGVQYLKLGQKDKAIETLKEAVKLNPEAYGPRLNL
                     GIAYLEAKKFPEAEEQIREALKRNSSLPTGHMYLGLCLVRLNRYDEAEKELLLAIEGS
                     NNQLAMAQYYLGGIYWKKEEYPKAVEALETYLRLTPNAHDAERVRATIKDLRGRTPN"
     gene            complement(1040..1411)
                     /locus_tag="VGD38_15335"
     CDS             complement(1040..1411)
                     /locus_tag="VGD38_15335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0729452.1"
                     /translation="MPRLKSRRGRAEVYFLLAIICVLLLPAAVSGQGNGRASTGTGGI
                     HQIRGYVFFPSGRRAEGTIVVRLQPINGGEITVIPDSSGSFIFAQLSPGRYTVVVDAG
                     DDYELARESVYIDTDLNLSRT"
     gene            complement(1571..>2959)
                     /locus_tag="VGD38_15340"
     CDS             complement(1571..>2959)
                     /locus_tag="VGD38_15340"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0729453.1"
                     /translation="GNPFIIRNTTRVRDFQLTGGTYTNVESFYVGDDWKFAKNFQLSF
                     GVRWDYQQSYGNDSSTYLKFNNFDDNAAPRFGFIWDFTGKGKGKVFANYAQFIEVPIP
                     LDVNVRAGGGDVQTDKNFNVNRLNAPSGSIIVPGVAGGATNLGSHATPADPGLKPQSI
                     REITGGFEYEVGGDVVLGARGVYRAMINVIEDGSFDDGENYFIFNPGRIGPGTTEENA
                     CAGDPSVGRAPQCFGRAQRFYRAVEFTANKRFTNNFQFIASYVFSSLIGNYEGLFRND
                     NGQSDPNITSLFDLQSLLDNTYGRLPNDRPHQFKFNGSYRTPWRLLVSGNFYAQSGVP
                     FNQLVPHPIYGNNEGFGVVRGTAIVPTVSASEPGFPNVVDSIGSNRTPTTFNLDLGVY
                     YPIRVGEGKELRLTGDWFNVFNSQRAVTLDQTFSINSGVAGVPPVQNPFWGSALLVQP
                     PSSFRFGAKFTF"
BASE COUNT          665 a          811 c          835 g          648 t
ORIGIN      
        1 tcaacgacca ccgtgtaatt gccgggctcg agtccattga aacgaaacac gccgtcctga
       61 tccgtagcgg tagacgacga cgcgccaaaa gagctggtgc tttccagatt tactttcacc
      121 gtgccggtcg tttgtcccga cgggaaatga acacgtccct ggatcgtgtt gttgccgctg
      181 ccggtagttg ggttgccgcg tgaactgccg ggcagtactc cctgcgagta caccgacacc
      241 gcagccgcca acgcaaaggc gatcgcaaga gcgagtctga aaatcgagaa ctgggcgaat
      301 gaactattgc tgggcatgat gatgattgct ttcctttctc tgtcaaaaac tagttaggag
      361 tgcgaccgcg gaggtctttg attgtagcac gcaccctttc ggcgtcatgc gcgttgggag
      421 tcaatcgcag gtaagtttcc agcgcctcga cagccttcgg atactcctct ttcttccagt
      481 agatcccacc gagataatac tgggccattg ccaactgatt attgcttccc tcaatcgcga
      541 gcaacaactc cttttcagcc tcgtcataac gattgagacg caccaggcac aaaccgagat
      601 acatgtgacc agtcggcaag gaagagttgc gcttcaaggc ctcgcgtatc tgctcttcgg
      661 cttcgggaaa cttcttggct tcgagataag cgattcccag attcagccgc ggaccatacg
      721 cttcgggatt gagttttaca gcctctttga gcgtctcgat cgctttgtcc ttctgaccga
      781 gcttcaggta ctgcacaccc aactcgttaa gtgcgatggg gaagtttgga tggagatcca
      841 ccgcctgttt gaggctctcg gcagctctct gggcatcgcc cgcgcgcgcg tgctccaatc
      901 ctttttcaaa cagcttgcgc gctctttcgg gcacttcggc aagcgctgca ttcaccacac
      961 cggctttcgt cgtcgtcccc ctcttcagtt ggaggtgaat catcacggtt tcgcggcgag
     1021 cggtgctggg agggcgtact caagttcgcg aaaggttcag gtcggtgtcg atatagacac
     1081 tctcgcgcgc aagctcatag tcatcgccgg cgtcaaccac caccgtgtaa cggccgggtg
     1141 ataactgagc gaagatgaac gagccgctgc tgtcgggaat gaccgtgatc tcaccgccat
     1201 tgatcggttg cagcctgact acgatcgttc cttcggcgcg ccggcctgaa gggaagaaca
     1261 cgtagcctcg gatctgatga atgccgccgg taccagtgga ggctctacca ttcccctggc
     1321 cggaaaccgc cgcgggtaag agcaggacgc agatgattgc gagtagaaaa taaacttcag
     1381 cgcggccgcg gcgagacttc agacgtggca tttggaacct ccctggaaag actcttgagg
     1441 tttgcagatt taactcctga agcgggcgaa gatcaagcct aaaaaccaat ttgtatagaa
     1501 aaaggggaga gggcttgtgg gcgcctctcc cctaaccgca gggctaatgc cttatgcgga
     1561 aattaattta ctagaaggtg aacttggcgc cgaatctgaa cgatgacgga ggctgcacca
     1621 gcaaagccga accccagaaa ggattctgca ctggcggaac acccgcgacg ccactattga
     1681 tcgagaaggt ctggtcgaga gtcactgcac gctggctatt gaatacgttg aaccaatcgc
     1741 cagtcagacg gagctcttta ccctcaccaa cgcggatcgg atagtaaaca cccaagtcga
     1801 ggttgaaggt cgtcggcgtt cggttggaac cgatgctgtc gacgacgttc gggaaaccag
     1861 gctcagaagc ggagacggtc ggaacgattg cggttccgcg gactacgccg aagccttcgt
     1921 tgttgccata gatcggatgc ggaaccagct ggttgaacgg cacacctgat tgcgcataga
     1981 agttaccgct gaccagcaat ctccacggcg tacgatagct gccgttgaat ttgaactggt
     2041 gcggacgatc gttcggcaaa cgtccgtaag tgttatcgag caggctctga aggtcgaaca
     2101 acgaagtgat gttcgggtca gactgtccgt tgtcgttacg gaagaggcct tcgtagtttc
     2161 cgatcaggct cgagaacacg taagaagcga tgaactggaa gttattcgta aatcgcttgt
     2221 tcgcggtgaa ctcgactgcg cgatagaaac gctgagcgcg gccaaagcac tgaggagcac
     2281 ggcccactga cggatcgcca gcgcaggcat tctcttcagt cgtgccaggg ccgatgcggc
     2341 ctgggttgaa gatgaagtag ttttcgccat cgtcgaacga accgtcttcg atgacgttga
     2401 tcatcgcgcg ataaacacca cgcgcgccga gcaccacatc accaccaact tcgtattcaa
     2461 aaccgccggt gatttcgcga atgctctgcg gtttcagacc agggtcggcc ggtgttgcgt
     2521 gcgaacccag gttcgtggct ccacccgcga cgcccggaac gatgatcgaa ccggaaggtg
     2581 cattcagtct gttgacgttg aagttcttgt cggtctgcac gtcgccgccg cctgcgcgaa
     2641 cgttgacgtc caacggaatc ggaacctcga tgaactgcgc gtagttcgcg aagaccttgc
     2701 ctttgccctt accggtgaaa tcccagataa agccaaagcg cggcgcagcg ttatcgtcaa
     2761 agttgttgaa cttcaggtag gtgctgctgt cgttaccata cgactgctgg taatcccagc
     2821 ggacaccaaa gctgagctgg aagttcttcg cgaatttcca gtcgtcgcca acgtagaagc
     2881 tttccacgtt ggtgtaggtt ccgcccgtaa gctggaagtc acgaacgcgg gtggtgttcc
     2941 tgataatgaa cggattacc
//
LOCUS       DASWTX010001006         2208 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_168803, whole genome shotgun sequence.
ACCESSION   DASWTX010001006 DASWTX010000000
VERSION     DASWTX010001006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2208
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168803"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..666
                     /locus_tag="VGD38_15345"
     CDS             <1..666
                     /locus_tag="VGD38_15345"
                     /inference="COORDINATES: protein motif:HMM:NF024743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat-containing
                     protein"
                     /protein_id="HEY0729454.1"
                     /translation="NAQQQMSKRYPGGKNVRVELRNISGTIVVESWNKNEIRLVATIE
                     SKTANIAPKQVNDCLIVDVMGDNRGRGDVGDINFKLHVPVNSSVDVETVRGNINVSNI
                     RGGLVRAYVSSEGDIELTNISASHVVAQNVTGNIFFDGEFSSGGTYEFKSNKGDITIR
                     VPGNSAFRLVASSPTRQIKLNDFWNNGFKTQDGRRVVGDVGDGRSSVSVTNFSGQITF
                     LRK"
     gene            772..1653
                     /locus_tag="VGD38_15350"
     CDS             772..1653
                     /locus_tag="VGD38_15350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729455.1"
                     /translation="MTILKPAAFLILLLALLPLPSRATQTTKPSAQAPPTIQLLTRST
                     RRSETRRFNYGGTITLIGAPRGAVTVEGWSRNEVELTAEIELKAETEADLDQLTKVNT
                     FVFDEDLNHISILTVGTHDRAYIKKVAKNFPKKLLNLPWKIDYRLRVPANTDLEINAG
                     YGPLKLSGVEGAMRLTATESETALTLTGGTVSVTITAGNVLLAIPVRSWRGGGADIRV
                     ATGVLNVELPAGFSGDVDADILFNGKIVNTYGALVSREKPGITERTVRGRAGAGGAFF
                     KFTVGNGTLNLKRSEVK"
     gene            1650..>2208
                     /gene="dcd"
                     /locus_tag="VGD38_15355"
     CDS             1650..>2208
                     /gene="dcd"
                     /locus_tag="VGD38_15355"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009394 - 2'-deoxyribonucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HEY0729456.1"
                     /translation="MSIKSDRWIRMMATEHRMIEPYEPGQVKELDGKRIVSYGTSSYG
                     YDIRCADEFKLFTNINSTIVDPKKFDEGNFVDIKGDSVIIPPNSFALARTVEYFRIPR
                     NVLTICLGKSTYARCGILVNVTPFEPEWEGYVTLEFSNTTPLPAKIYANEGVAQVVFF
                     ESDEDDVCETSYKDRGGKYQGQRGVT"
BASE COUNT          534 a          653 c          599 g          422 t
ORIGIN      
        1 aacgcccaac agcaaatgtc gaaacggtat cccggcggta agaacgtccg cgttgagctc
       61 agaaatatct ccggcacgat cgtcgtcgag tcgtggaaca agaacgagat ccgcctcgtg
      121 gcgacaatcg aatcaaaaac cgcgaacatc gctccgaagc aggttaacga ttgcctcatc
      181 gtcgacgtga tgggcgacaa tcgcggccgc ggcgacgtcg gtgacatcaa tttcaaactt
      241 catgtcccgg tgaattcatc agtcgacgtc gaaacggtcc gcggcaacat caacgtctca
      301 aacatccgcg gtggtctggt gcgcgcttat gtttccagcg aaggcgacat cgagttgacg
      361 aacatctccg cgtcgcacgt ggtggcgcaa aacgtcaccg gcaatatctt ctttgacggc
      421 gagttttcca gcggcggcac ctacgagttc aaatcaaaca agggcgacat cacgattcgc
      481 gttccgggaa attcggcgtt tcgcctcgtc gcgtcgtcgc cgaccagaca gatcaaactc
      541 aacgacttct ggaacaacgg tttcaagact caggacggcc gcagagttgt cggcgacgta
      601 ggcgatggcc gctcctctgt ctcagtcacg aattttagtg gtcagatcac tttcttgcgg
      661 aaatagtccg cagttgcaat ggcaagcccg gatacggacg ttgcaccagc agcgtccgtt
      721 tttttatttt gcattctgcc aaaggacgct tactattggc gcgcactcgc gatgacaatc
      781 cttaagcctg ctgccttcct aattctgttg ctcgcactgt tgccgttgcc gtcccgcgca
      841 acgcaaacga cgaaaccgtc agcgcaagcg ccgcccacga ttcaactcct gactcgcagc
      901 acgcgccgca gcgagacgcg ccgcttcaac tacggcggca ccattacact gatcggagcg
      961 ccacgcggag cggtcacagt cgaaggctgg tcgcgcaacg aagtcgaact aacagccgag
     1021 atcgaattga aagcggagac cgaagccgat ctggaccagc tcacaaaggt gaatactttc
     1081 gtcttcgacg aagatctcaa ccacatcagc atactgaccg tgggcacaca cgatcgcgcg
     1141 tacataaaga aggtcgcgaa gaacttcccg aagaagctgc tcaatctgcc gtggaagatc
     1201 gactatcgtc tgcgtgtgcc cgcaaacact gatctcgaaa tcaacgccgg ctatggacca
     1261 ctaaaacttt ccggcgtcga aggggcgatg cgtctgactg ctaccgaaag cgaaaccgca
     1321 ctgacgctaa ccggcggcac tgtttccgtg acgatcactg caggcaacgt gctgctcgcc
     1381 atcccggtgc gtagttggcg cggcggcggc gccgatattc gagttgctac cggcgtgctc
     1441 aacgtcgaac tgcctgccgg cttcagcggc gacgtcgacg ccgacatcct gttcaacggc
     1501 aagatcgtga acacatacgg agctctcgtg tcgcgcgaga aaccgggaat cactgaacgc
     1561 acggtgcgcg ggcgtgcggg cgcgggcggc gcttttttca agttcacagt cggaaacggc
     1621 accctgaacc tcaagaggag tgaggtcaaa tgagtataaa gtcggatcgc tggataagaa
     1681 tgatggccac cgaacatcgc atgatcgagc cgtacgagcc gggccaggta aaggaactcg
     1741 acggcaaacg gatcgtctct tacggcacgt ccagctacgg ctacgacatc cgctgcgccg
     1801 acgaattcaa actcttcacg aacatcaaca gcacgatcgt cgatccgaaa aaattcgacg
     1861 agggaaactt tgtcgacatc aagggcgatt cggtaatcat tccgccaaac agtttcgcgc
     1921 tcgcgcgcac ggtcgaatac tttcgcatcc cgcgcaacgt gctaacgatc tgtctcggca
     1981 agagcacgta cgcgcgttgc ggcattctcg taaacgtcac gcccttcgaa cccgagtggg
     2041 aaggttacgt aacgctcgag ttttcaaaca cgactccttt gcccgcgaag atctacgcca
     2101 acgaaggcgt cgcacaagtc gtgttcttcg aatccgatga ggacgacgtt tgcgaaacgt
     2161 catacaaaga tcgcggcggc aagtaccagg gccaacgcgg cgtcacgc
//
LOCUS       DASWTX010001007         2394 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_122646, whole genome shotgun sequence.
ACCESSION   DASWTX010001007 DASWTX010000000
VERSION     DASWTX010001007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2394)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2394)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2394
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122646"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..836)
                     /locus_tag="VGD38_15360"
     CDS             complement(<1..836)
                     /locus_tag="VGD38_15360"
                     /inference="COORDINATES: protein motif:HMM:NF012242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HEY0729457.1"
                     /translation="MQQVIGLDFGTTNSAIAVAEAGKAATLAGFADGSNTTTSFRSIL
                     YFPQKDRSSTVKPETKAGPEAINSYLDADTKGRLILSVKSYLGSRLFTSTQINGRYYT
                     LEDLIAIILRRLRTTVIEQFGVSANSVVLGRPVRFAGAENEADETLALNRLRSAAELA
                     GFSEVTFELEPVAAAYQYETLLDHDELVLIGDFGGGTSDFTLAQLGPGRKQTGRNPVI
                     GTSGVAIAGDTFDSRIMMNLVAPKLGLGSHYVSLGKELPVPVWLYSQLSSWHRTFLLK
                     DP"
     gene            870..1451
                     /locus_tag="VGD38_15365"
     CDS             870..1451
                     /locus_tag="VGD38_15365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729458.1"
                     /translation="MLNAKHLDGIASGKIKLAFRKWKKPTVKTGGRLRTSIGVLAIKA
                     VDPISEKEITDRDAKLAGFASRAELLKDLEWRDGELYRIRLSLAGPDERIALRNKRTI
                     SDAEWTELREKLNRLDARSVHGPWVVSFLTVVSTHPGVLAATLAASLGLERKWFKEHM
                     RKLKELGLTESLAIGYRLSPRGETALKRLNYSA"
     gene            complement(1462..>2394)
                     /locus_tag="VGD38_15370"
     CDS             complement(1462..>2394)
                     /locus_tag="VGD38_15370"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY0729459.1"
                     /translation="FEDFLLPGENESTAPERDTMRQVVRENYFATMGIPFLSGRDFTP
                     GDDSHAPRVGIVNQTFVRQFFPDGEIVGKSVTFLGDKRQIEIIGVAADTKYESQREDV
                     KPLLYTPWQQEVAELGEMHFVVRTMNEPTPLVPVVRQVVRELDGNLPVVEISTQSARA
                     QKILAQERLYVRLLSFFGGVALLLAAIGLFGVMAYSVSQRTQEIGIRMAFGAQMASVV
                     RLVIWQGMKLVLFGLSIGALAWFALNRLLQSQYFGPGSWQRGMTQQLYGIKLSDPLTI
                     IVTASLLILVALVACWLPARRAAKVDPLVALRHE"
BASE COUNT          524 a          666 c          685 g          519 t
ORIGIN      
        1 ttcggatcct tgagcagaaa cgtgcggtgc caactcgaga gttgtgaata cagccatacg
       61 ggtacaggga gttctttgcc tagcgaaacg tagtgcgaac cgagaccgag tttcggcgcg
      121 acgagattca tcatgattcg gctgtcgaag gtgtcgcccg cgatcgccac gcctgaagtg
      181 ccgatgacgg gatttctgcc ggtctgtttt ctgcctggac caagttgggc caacgtgaag
      241 tcgcttgtgc cgccgccgaa gtcgccgatc aggaccaact cgtcgtgatc gagtagggtt
      301 tcgtattgat atgcagccgc gacgggttcg agttcgaatg tgacttcgga aaagccggcg
      361 agttcggctg ctgagcggag ccggttgagt gccaacgttt cgtcggcttc gttttccgcg
      421 cccgcaaaac ggacgggccg gccgagtaca acgctgttag cggaaacgcc gaattgttcg
      481 atcacggtcg ttcgcaaacg ccgcaggatg atggcaatca gatcttcaag cgtgtagtag
      541 cgcccgttga tctgtgtgga cgtgaacagt cgactcccga gataggactt aacggataga
      601 atgaggcgcc ccttcgtgtc ggcatcgaga tacgaattga ttgcttccgg cccggctttc
      661 gtttccggtt tgactgttga agaacggtcc ttttgcggga aatacagaat cgatcgaaag
      721 ctcgtggtcg tattgctgcc gtcggcgaag ccggcgagcg ttgccgcttt accggcttcc
      781 gctacggcaa tcgcgctgtt agttgtgcca aaatctaatc cgataacctg ctgcatcttc
      841 gtttgctaag cataggacag gctctcgtgt tgctcaacgc taaacatctc gacggaatcg
      901 cgagcggaaa gatcaagctc gcgtttcgca agtggaaaaa accaacagtc aaaaccggcg
      961 ggcggcttcg tacttcgatc ggcgtgctgg cgattaaggc agtggatccg atttccgaaa
     1021 aagagatcac ggatcgcgac gccaaacttg ccgggttcgc atcacgggcc gagctgttga
     1081 aggatttaga atggcgcgac ggggaactct atcgcatccg tctctctctt gccggcccag
     1141 acgaacgcat cgcacttcgg aacaaacgca cgatctcgga tgctgaatgg acggaactca
     1201 gagagaagtt gaaccggctg gacgcgcgca gcgttcatgg tccatgggtg gtaagcttcc
     1261 tgacagttgt ctcgacgcat cccggtgtcc ttgccgcgac cctcgcagcg tcgctcgggc
     1321 ttgaacgaaa gtggttcaag gaacacatgc gcaagttgaa agaacttggc ctcaccgaaa
     1381 gcctcgcaat tggttacagg ctctcgccac gaggcgagac cgcgctgaag cggctcaact
     1441 actcggccta attggtcttt tctattcgtg tcgaagagca accagcggat cgactttcgc
     1501 ggcgcggcgc gcgggtaacc aacaggcaac tagcgcgacg agtatcagca atgaagcggt
     1561 cacgattatc gtcaagggat cgctaagttt gattccgtaa agttgttgcg tcataccgcg
     1621 ctgccagctt cctggtccaa aatactgact ctgcaaaagg cggttcaatg caaaccacgc
     1681 caacgcgccg atgctgagac cgaacagcac taatttcatt ccttgccaga ttaccaacct
     1741 gactacgctg gccatttgcg cgccgaatgc catgcggatg ccgatctcct gtgtccgttg
     1801 gctaacggaa taagccatta ctccgaagag tccgatggcc gccagcagga gcgccactcc
     1861 gccgaagaaa ctcaagagcc gcacgtagag ccgctcctgc gccaggatct tttgcgcgcg
     1921 cgccgattgc gtgctgattt ctacgaccgg cagattgccg tcaagttcgc gcaccacctg
     1981 acgcaccacg ggaacgagtg gcgtcggttc gttcatcgta cggacgacga aatgcatctc
     2041 gcccagttcg gcaacttcct gttgccacgg tgtatagagc aacggcttaa cgtcttcgcg
     2101 ctggctttcg tatttggtgt cagccgctac gccgatgatc tcgatctgac gcttgtcgcc
     2161 gagaaacgtg acagacttgc cgactatttc cccatccgga aagaactggc ggacgaacgt
     2221 ttgattcacg atgcccacgc gcggtgcatg cgaatcgtct ccgggcgtaa aatcgcggcc
     2281 gctcagaaag ggaattccca tcgtcgcgaa atagttctcg cgcacgacct gacgcatggt
     2341 atcgcgctct ggggcagtgc tttcattctc gcccggcagt aaaaagtctt cgaa
//
LOCUS       DASWTX010001008         1756 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_344704, whole genome shotgun sequence.
ACCESSION   DASWTX010001008 DASWTX010000000
VERSION     DASWTX010001008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1756)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1756)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1756
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344704"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1347
                     /locus_tag="VGD38_15375"
     CDS             <1..1347
                     /locus_tag="VGD38_15375"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:NF024703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HEY0729460.1"
                     /translation="HLFFADLNLRDNHYGSVLPDYTAVILDEAHLIEDVASEYFGSQV
                     SNYQIEDLIRDLGMLTIEDADVDRELNNSLARLSRFADNFWMGFRDGRGEEGRYPIIP
                     GTFARKKSNGEFESTQLGELYLFVDGAIARVESTLDAMPDKPPEVDALIRRAREIRFA
                     LQFIVTGTDKKFVYWLERRNRGVFLRASPIDVAGLLQDKLFEEVPTVVLTSATLSSGG
                     NFNFIRDRLGLDTADDLIAESSFDYESQAILYLPPRMPDPRSNEWARAAALEVTKILH
                     ATEGRAFVLSTSFAGMQSLFENVWAEIDYPCLVQGSAAKGQLLKQFRETPNAVLCATS
                     SFWQGVDVRGQQLSCVIIDKLPFAVPSDPLVAARQRYIEDSGGSSFYQYSVPQAIIAL
                     KQGLGRLIRSTTDRGVLAVLDPRLRTKGYGRTFLQSLPPCRVTSRIDELSSILVAD"
     gene            1350..1730
                     /gene="queD"
                     /locus_tag="VGD38_15380"
     CDS             1350..1730
                     /gene="queD"
                     /locus_tag="VGD38_15380"
                     /EC_number="4.1.2.50"
                     /inference="COORDINATES: protein motif:HMM:NF013411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HEY0729461.1"
                     /translation="MPGKFEVMIERNFSSAHQLRGYRGKCENLHGHNYKIEIYARGRE
                     LDNVGLLVDFVELKAAADEVVTYLDHRNINELPPFDELQPSAENLAKYVLERVSSRVG
                     DDRVQIYKVRCFETPTSVATYELD"
BASE COUNT          353 a          475 c          549 g          379 t
ORIGIN      
        1 catctcttct tcgccgatct gaatctgcgc gacaaccatt acggctcggt gttgcctgac
       61 tacacggcgg tcatactcga cgaagcgcac ctgatcgaag acgtggcgtc tgaatacttc
      121 ggttcacaag tctcgaatta ccagatcgaa gatctgatcc gcgacctcgg aatgctgacg
      181 atcgaagacg cggacgtcga tcgcgagctc aacaacagcc tcgcgcgctt gtcgcggttt
      241 gccgacaatt tctggatggg atttcgcgac gggcgcggcg aggaagggcg ttatccgatc
      301 attccgggga cgtttgcgcg gaagaagtcg aacggcgagt ttgagtcgac gcaactcggc
      361 gagctttacc tgtttgttga cggcgcaatc gcgcgtgtcg agagcacgct cgatgcgatg
      421 cccgataagc cgccggaagt cgacgctctg atccggcgcg cgcgagagat tcggtttgcg
      481 ctccagttca tcgtgaccgg cacggacaag aagtttgttt actggctgga gcgtcgcaac
      541 cgcggtgtgt ttttgcgcgc ttcgccgatc gacgttgccg gtttgctgca agacaagttg
      601 tttgaagaag tcccgactgt ggtgctcacg tcggcaacgc tttcgagcgg cggcaacttt
      661 aacttcattc gcgatcgcct cggcctcgac accgctgacg atctcattgc cgagtcgagc
      721 tttgattacg agagccaggc gattctttac ctgccgccca ggatgcctga tccgcggtcg
      781 aatgaatggg ccagagcagc ggcgcttgag gtgacgaaga tactgcacgc aaccgagggc
      841 cgcgcgtttg ttttgtcgac gagcttcgcg ggtatgcaat cgctgtttga gaatgtgtgg
      901 gcggagattg attatccgtg tctcgttcag ggcagcgctg cgaaggggca gttgctcaaa
      961 cagtttcgcg agacgccgaa tgcggtgttg tgtgcgacgt cgagtttttg gcagggcgtg
     1021 gacgtgcgcg ggcagcagtt gtcgtgcgtg atcatcgaca agttgccgtt tgccgtgccg
     1081 agcgatccgc ttgtggcggc aaggcagcgg tacattgaag acagcggtgg atcgagtttt
     1141 tatcagtaca gcgtgccgca ggcgatcatc gcgctgaaac aggggctcgg gcggttgatt
     1201 cgcagcacga cggatcgcgg tgtgctggcg gtgctcgatc cgcgtttgcg cacgaaaggt
     1261 tacggccgca cgtttctgca aagtttgccg ccgtgccgcg tcacttcgcg catcgacgag
     1321 ctatcgagta ttttagtagc ggattaatca tgcctggaaa attcgaagta atgatcgagc
     1381 gcaacttctc gagcgcgcat caactgcgcg gctatcgcgg gaagtgtgag aacctgcacg
     1441 gacacaacta caagatcgag atctacgcgc gcggccgcga actggataac gttgggttac
     1501 tggttgattt tgtggagttg aaagcggcgg cggacgaagt cgtgacctac ctcgaccacc
     1561 gcaacatcaa cgaactgccg ccgtttgacg agctacaacc ctccgccgag aacctcgcga
     1621 agtacgtgct cgaacgcgtg tcgtcgcgcg tcggcgacga ccgcgtgcag atctacaaag
     1681 tccgctgttt tgagacgccc accagcgtcg cgacctacga gctagactga gcaaaggcaa
     1741 tccgcagatt acccag
//
LOCUS       DASWTX010001009         2108 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_79180, whole genome shotgun sequence.
ACCESSION   DASWTX010001009 DASWTX010000000
VERSION     DASWTX010001009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2108
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79180"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..268)
                     /locus_tag="VGD38_15385"
     CDS             complement(<1..268)
                     /locus_tag="VGD38_15385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729462.1"
                     /translation="MTFPKLVVFINALIPLTLLLWDVSRNRVGPNPLEFATRTTGMLT
                     LVFLCLALAVTPLRKIFGINALVKFRRMLGLFAFFYGVLHLLTYV"
     gene            complement(278..1234)
                     /gene="msrP"
                     /locus_tag="VGD38_15390"
     CDS             complement(278..1234)
                     /gene="msrP"
                     /locus_tag="VGD38_15390"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: protein motif:HMM:NF003767.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016667 - oxidoreductase activity, acting
                     on a sulfur group of donors [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HEY0729463.1"
                     /translation="MREKITDKETYLNRRFFIRAAVLAGTATTSTLLYRRLNPAPEQP
                     VEGEKLNAAVSESKSEAVKNGYVVEDQLTSFEAITNYNNFYEFDTSKAGVARAAKGFV
                     TRPWEVAVGGLVNKPRVFDLDELLKFPLEQRIYRLRCVEGWSMVIPWIGFPLNKLLEK
                     VEPASQARYVAFETLLDPTRMPNQRTGVLDWPYVEGLRLDEAMHPLTIMATGLYDETL
                     PPQDGAPIRLVVPWKYGFKSIKSVVKITLVADQPPTTWNIQTPYEYGFYSNVNPNVPH
                     PRWSQATERRIGEFGRRNTLLFNGYAEQVAHLYQGMDLVENF"
     gene            1257..>2108
                     /locus_tag="VGD38_15395"
     CDS             1257..>2108
                     /locus_tag="VGD38_15395"
                     /inference="COORDINATES: protein motif:HMM:NF013132.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008509 - monoatomic anion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006820 - monoatomic anion transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HEY0729464.1"
                     /translation="MQNTPETEKEPNERLGFRSLLLRWAIVLFVAVGILLIPVPEGVT
                     PQSWRLLAIFAATITGSIVRPIPGAAVVLLGVTALPLFNVMRMNEVLTGYADPVVWLV
                     LAAFFISRGMIKTGLGRRIAFLFIKAIGRHSLGLSYALASTEAVLATVIPSTGARSGG
                     IIFPIAKSLAEAYESRPGPTARRLGAFLMASVYQCNVVVCAMFLTGQASNPIIARFAQ
                     ETTGIEITYARWAIGAIVPGILSLIIVPWLLYRVFPPEIKHTPAAGEFAEKELHAMGP
                     MKWSEWLM"
BASE COUNT          450 a          587 c          585 g          486 t
ORIGIN      
        1 aaacgtaagt cagcaaatgc agcacgccgt agaagaacgc gaacaggccc agcattcggc
       61 gaaacttcac gagcgcattg ataccgaaga tcttccgcag cggcgtgacc gcgagtgcca
      121 ggcacagaaa gacgagcgtc agcatgccgg tcgtacgcgt ggcaaactcc aacgggtttg
      181 gtccaacacg gttcctagaa acatcccaca gcaagagcgt gagcggaatc aatgcgttga
      241 taaaaacgac gagcttggga aacgtcatgg cgcgccttca gaagttctcc accaggtcca
      301 ttccctgata cagatgtgcg acttgttcgg cgtagccatt gaacagcagc gtgttgcggc
      361 gtccgaattc gccgatgcgg cgctccgtgg cctggctcca ccgcggatgc ggcacgttcg
      421 ggttcacgtt ggaatagaac ccgtattcgt atggcgtttg gatattccag gtcgtgggcg
      481 gttgatcggc aacgagtgtg atcttcacga ctgacttgat gctcttaaaa ccgtatttcc
      541 atggcacaac caatctgatt ggcgcgccgt cctgcggcgg caacgtttcg tcgtaaagtc
      601 cggtggccat gatcgtcaac ggatgcattg cttcgtcgag acgaagtcct tcgacgtagg
      661 gccagtcgag cacgccggtg cgctggttcg gcatgcgagt cggatcgagc agcgtttcaa
      721 acgcgacata tcgcgcctga gaagccggtt cgaccttctc gagcagtttg ttcagcggaa
      781 aaccgatcca cggaatgacc atggaccagc cttcgacaca gcgcaagcgg taaatccgtt
      841 gctcgagtgg aaacttcagc aactcatcga gatcgaaaac acgcggttta ttaaccaaac
      901 caccaaccgc gacttcccac ggtcgtgtta caaagccctt cgcggcgcgt gcgacgccgg
      961 ctttcgaagt atcaaactcg tagaagttgt tgtagtttgt gatcgcttca aacgaggtca
     1021 actgatcttc gaccacgtaa ccgtttttca cagcttctga tttcgattca ctgacggccg
     1081 cgttgagctt ttcgccttcg acaggttgct ccggcgctgg attgagccgt cgataaagaa
     1141 gcgtgcttgt ggtggccgtc ccggccagca ccgcggcacg gatgaaaaaa cgcctgttca
     1201 aatatgtttc tttatcggtt atcttttccc gcattttgag ccttgccttc tagagtatgc
     1261 aaaacacccc cgaaactgaa aaggaaccta acgagagatt aggattccga agcctcctgc
     1321 tgcgttgggc gattgttttg ttcgtcgcgg tcggcatcct actgattccg gttcctgaag
     1381 gtgtcacgcc gcaatcatgg cgcttgctgg cgatcttcgc agcgacgatc acgggatcga
     1441 ttgtgcgtcc gattccgggc gcggccgtgg tcttgctcgg cgtcactgcg ttaccgctct
     1501 tcaacgtgat gcggatgaac gaggtgctta ccggatatgc agatccggtt gtgtggctcg
     1561 tgctcgcagc gttcttcatc tcgcgtggca tgatcaagac cggcctgggc cggcgtatcg
     1621 catttctttt cataaaagcc atcggccgtc attcactcgg tctcagttac gcgcttgctt
     1681 cgactgaagc cgtgctcgcc accgttatcc cttcaacagg cgctcgatca ggcggaatca
     1741 tctttccgat cgcgaaaagt ctcgccgaag cttacgaatc gcggcccgga ccaacagcgc
     1801 gccggctcgg cgcgtttctg atggcgagcg tctaccaatg taatgtcgtt gtatgtgcca
     1861 tgttccttac agggcaagct tcaaatccca tcattgcgcg gtttgcccag gaaacaaccg
     1921 gaatcgagat cacttacgca cgttgggcca tcggcgcaat cgtgccggga attctcagcc
     1981 tgatcatcgt tccgtggttg ctctatcgag tttttccacc cgagatcaag cacacacccg
     2041 ccgcgggtga gtttgcggaa aaagagttgc acgcgatggg accgatgaag tggtccgagt
     2101 ggttgatg
//
LOCUS       DASWTX010001010         4140 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_250664, whole genome shotgun sequence.
ACCESSION   DASWTX010001010 DASWTX010000000
VERSION     DASWTX010001010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4140
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250664"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            189..344
                     /locus_tag="VGD38_15400"
     CDS             189..344
                     /locus_tag="VGD38_15400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729465.1"
                     /translation="MLIKFFKDENGLELSEYAVIAALIVLATVAAFTLLNNRIAARIE
                     TLAGFIQ"
     gene            459..986
                     /locus_tag="VGD38_15405"
     CDS             459..986
                     /locus_tag="VGD38_15405"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: protein motif:HMM:NF013632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A24 family peptidase"
                     /protein_id="HEY0729466.1"
                     /translation="MLSPTATVFQFFLVPLAVLIIYYDVRYRRIPNPFVLATLISGLT
                     LNLAMGGLNGGLSSIGGCVLAFILMFILHVFGAMGAGDVKLFAAIGSVIGVQIVLPTF
                     VVVVLTGGLLALVSTLRSGIFATTMHRVLQILVGLLPGWQMPKFSVPADRRLTIPYGA
                     AITIGAIIATAIFHR"
     gene            1037..1942
                     /gene="cpaB"
                     /locus_tag="VGD38_15410"
     CDS             1037..1942
                     /gene="cpaB"
                     /locus_tag="VGD38_15410"
                     /inference="COORDINATES: protein motif:HMM:TIGR03177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp pilus assembly protein CpaB"
                     /protein_id="HEY0729467.1"
                     /translation="MRNKRFLIVLVGALIFGVLAAVSVSKYLSSAQAYTKNLNKVAVA
                     KVAIPIGSKIIAEQIMVVQFPKESTPDGAYDSPEKLAGRVAVMNIAAREPITESRLAP
                     EGTAAGLSAVIPEGYRAMTVKVDDAAGISGFIMPGTLVDVVVVIDPREGSGMQDPISK
                     IVLQNIKVLANGQNIDKPENEREANSVKAVTLQVTPEQAEKLALASSEGRLQLVMRNQ
                     IDQGDEQTPGVNKRSLLSGEKATQAPEPGALKSEQTKQESKPVVRRSAPVAKPAAAAP
                     AAPQPTPRASVEMIEGAKKRSVEFP"
     gene            2046..3587
                     /locus_tag="VGD38_15415"
     CDS             2046..3587
                     /locus_tag="VGD38_15415"
                     /inference="COORDINATES: protein motif:HMM:NF012485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II and III secretion system protein family
                     protein"
                     /protein_id="HEY0729468.1"
                     /translation="MSLLLAALITIFANSIAGAQETSYKASFGQSKEAVPVNVLVGQS
                     RVINFDRPVGRFSVSNPEIAEAVLVTPDQVLVNGKAFGQVNFIAWEQTGGQFLVFDVF
                     VRANLSLIDSQIRALFPKEDIRLSQANGSVVISGSVANAATSAQVQAVVEAANFKVVN
                     MLTSPVSNATQIQLQVRVAEVNRTKLRDYGTSYLTGGMTGGYANSGGGPSTIGDSTNG
                     ISALLNPALNVLLFNNSLNTLAMLKLLRQEGAFRELAEPNLIAMNGAQASFLAGGEFP
                     VPVIQNLGGGSGAITIVWKEYGVRLNFKPTIIDEDHIRLELEPEVSTIDFTNGVRFNG
                     FVVPALRTRRAKTGVELRDGQSFALAGLLDNSETKTLSRIPIVSDIPVIGALFKSKSF
                     EKKETELMFFVTAHMVKPVNEDDLPNMRGMDGLKGNSPLGVEPKGEGISGETGYKVSG
                     QNNQTPAATPAAPAKVEEPKTKAVETSTQTSTTGAVSSVRTNTALPVAKAVKFDFNPE
                     SVRPW"
     gene            3639..>4140
                     /locus_tag="VGD38_15420"
     CDS             3639..>4140
                     /locus_tag="VGD38_15420"
                     /inference="COORDINATES: protein motif:HMM:NF024792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein TadG-related protein"
                     /protein_id="HEY0729469.1"
                     /translation="MKNRRMQQAGKNKRERGSILATSAIGMLSILLAVGLGVDISRFY
                     LTKTELQNAADAAALAAVSGLNTAPTGITKAADRAVAAMNNYNFNHTSVSFPRGNVEF
                     AANLNGPYMSEGSATSQAAKIRFVRVTTPASAAGVSFAASVLGNSKNITATATAGFSV
                     PLNEFCN"
BASE COUNT          940 a         1175 c         1159 g          866 t
ORIGIN      
        1 tgcgtcgcag ctttcacgct gttgggcgga aatattgcca accgtatcac tgcgctggcc
       61 aacacgatct ccggtggcgc taactaatta gccggccggg ctaatactgg cagcggcaac
      121 tgttgttggt cgctgacggc ggactcgcaa ggcccaaggt tttcgaacgt cgaacagagg
      181 aaagagtcat gttgatcaaa ttcttcaaag acgaaaatgg acttgagctg tcggagtacg
      241 ccgtcatcgc cgcgcttata gtgcttgcaa cagtcgccgc attcacactg ctaaacaacc
      301 ggatagcggc caggatcgaa acactggccg gtttcatcca gtgaactcaa gcgagtgaaa
      361 agccgtcgtc aggtggcgcg ccttgtgaag cttcggtctc cacgggtgcg ccgccaactt
      421 tcttgcatta accccaaaac actgccctca aaatttttat gttgagtcct accgcaacag
      481 tttttcagtt ttttctcgtg ccgctcgccg tgctgattat ttactacgac gtgcggtatc
      541 ggcgcattcc taatcccttc gtgctggcca ctttgattag tggactgact ttgaacctgg
      601 ccatgggcgg actcaatggt ggtctaagca gcattggcgg atgtgttctg gcctttattc
      661 tgatgttcat actgcacgtg ttcggagcca tgggcgccgg cgacgtcaaa ctcttcgccg
      721 cgatcggatc tgtgatcggc gtccagatcg tgcttccgac ttttgtcgtg gtggtgctga
      781 cgggcggctt gctggcgctc gtgtcgaccc tgcgctcggg aatattcgca accaccatgc
      841 atcgcgtgct gcaaattctc gtcggcttac tgcccggatg gcagatgccc aaattcagcg
      901 ttcctgctga tcgtcgtctg actattccct acggcgcagc gatcaccatc ggcgccatca
      961 tcgcaaccgc gatctttcat cgctaacagc ggccaacaat caggcctttg acctggcaga
     1021 acggagagtt gattccatgc gaaacaaacg atttttgata gtcctggtag gagcactgat
     1081 ttttggtgtg ctcgctgccg tgtcagtcag caagtacttg tcgagcgcgc aggcttacac
     1141 gaagaacctg aacaaggttg ccgtggcgaa ggttgcgatc ccgatcggta gcaagatcat
     1201 tgccgagcag atcatggtgg tccagtttcc caaggaatca actcccgacg gagcctacga
     1261 ctctcctgaa aaactcgccg gccgcgtggc tgtcatgaat atcgccgcgc gcgaaccgat
     1321 cactgaatcg agactagcgc cggaaggaac ggctgccggt ttgtcggcgg tgattcctga
     1381 aggctaccgc gcgatgaccg tcaaggtcga cgacgcagct ggcatctccg gtttcatcat
     1441 gccgggaacg ctcgttgacg tggtcgtcgt gatcgatccg cgcgaaggtt caggcatgca
     1501 ggatccgatc tcgaagatcg tcctgcagaa catcaaggtc ctggcgaacg gtcagaacat
     1561 cgacaagccg gaaaatgaac gcgaagcaaa cagcgtcaag gccgtgacac ttcaggtcac
     1621 gccggagcag gccgaaaaac tcgcgctcgc gtcgagcgaa ggccgcttgc aactcgtcat
     1681 gcgcaaccag atcgaccagg gcgacgaaca gactcctggc gtgaacaagc gcagcttgct
     1741 gtcgggtgaa aaagcgacgc aagccccgga accgggtgca ctgaagagcg aacaaacgaa
     1801 gcaagagagc aagccagtcg tacgtcgatc ggcgccagtg gcaaaaccgg cggcagcagc
     1861 ccccgcagct cctcaaccca caccgcgtgc gtcagtggaa atgatcgaag gcgcgaagaa
     1921 gcgcagtgtc gagtttccat agatcactca gtcaaccaat tatttcttga agttgatcgc
     1981 attgacgatc gctagaaaca aaggagcaca gaatcatgca gagccgttcc ccaatttcgc
     2041 gccgagtgag tctattgctg gcggcgttga taaccatctt tgctaactcc atcgctggcg
     2101 cccaggagac ttcctacaag gcgtcattcg gccaatcaaa agaagccgtc ccggtaaacg
     2161 ttctcgtcgg ccaatcgcgc gtgatcaatt tcgatcggcc ggtcggacgc ttttcggttt
     2221 cgaatcccga aatcgcggaa gccgtgctgg tgacgcccga ccaggtgctc gtcaacggta
     2281 aggcgtttgg tcaggtcaac ttcatcgcct gggaacagac cggtggccag ttcctggtgt
     2341 ttgacgtttt cgttcgtgcc aacctttcac tgatcgattc ccaaatccgc gcgctgtttc
     2401 cgaaagaaga cattcgtctc agccaggcga acggatcggt cgtgatttcg ggcagcgtgg
     2461 caaacgccgc gacgtccgct caggttcagg ccgtcgtcga agccgcgaac ttcaaagtcg
     2521 tgaacatgct gacgtcgccg gtctcgaacg ccacgcagat tcagcttcag gttcgtgtcg
     2581 cggaagttaa tcgcacgaag ttgcgcgact acggcacgtc ctacctgacc ggcggaatga
     2641 ccggtggtta cgccaacagc ggcggtggtc caagcacgat cggcgactca actaacggta
     2701 tcagtgcgtt gctgaacccg gcgctcaacg tcctgctctt caataactca ctcaacactt
     2761 tggcgatgct caagcttttg cggcaggaag gcgccttccg tgagttggcc gaaccaaacc
     2821 tgatcgcgat gaacggcgcg caggcgagct tcctcgccgg cggtgagttc ccggtgccgg
     2881 tgatccagaa cctgggcggt ggcagcggtg cgatcacgat cgtttggaaa gagtatggcg
     2941 ttcgcctgaa cttcaaaccg accatcatcg acgaagatca cattcgtctc gagctcgaac
     3001 cggaagtctc cacgatcgac tttaccaacg gcgtccgctt caacggtttc gtcgttccgg
     3061 ctttgagaac tcgccgtgcg aagaccggcg ttgaactgcg tgacggccag tcgttcgcgc
     3121 ttgccggcct gctcgacaac tccgaaacca agactttgtc gagaatcccg atcgtcagcg
     3181 acattccggt gatcggcgcg ctcttcaaat cgaagtcttt cgagaagaaa gaaacggaac
     3241 tgatgttctt cgtgactgcg cacatggtta agcccgtcaa cgaggacgat ctgccgaaca
     3301 tgcgcggcat ggatggtctg aagggcaact cgccgttggg cgtcgagccg aagggcgaag
     3361 gcatctcggg cgagaccggt tacaaggttt caggtcagaa caaccagact ccggccgcca
     3421 ctccggctgc tccggcgaag gttgaagaac cgaagaccaa ggctgtcgaa accagcacgc
     3481 agaccagcac caccggtgcg gtcagcagcg ttcgcaccaa caccgctctt ccagtcgcga
     3541 aggctgtgaa gtttgacttc aatcccgaat cagttcgccc ctggtaacaa cttcctcgaa
     3601 tcgaaaaaca gttcgtcatt tcgcagaggg gggaaaacat gaagaaccga aggatgcaac
     3661 aagcaggtaa gaacaagcgg gagcgaggtt caatcctggc gacatcagcc atcggcatgt
     3721 tgtcgattct actcgcggtc ggtctgggag ttgatatcag caggttctac ctgacgaaaa
     3781 ctgaattgca gaacgcagca gacgcggcag cattagctgc cgtgtctggg ctcaatacgg
     3841 cccctacggg aataaccaag gcggccgatc gagcagtcgc tgcaatgaac aactacaact
     3901 tcaatcacac gagcgtttcc ttcccccgag gtaacgtcga gtttgcagct aaccttaatg
     3961 gtccatacat gagcgaaggc tcggctacgt cacaggccgc gaagattcgc ttcgtcagag
     4021 ttacaacgcc ggcttcagca gcaggcgttt cattcgctgc ttcagtgctg ggcaacagca
     4081 aaaacatcac agctacggcg acggcgggtt tttcagtgcc gttgaatgaa ttctgtaatt
//
LOCUS       DASWTX010001011         4121 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_168895, whole genome shotgun sequence.
ACCESSION   DASWTX010001011 DASWTX010000000
VERSION     DASWTX010001011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4121
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168895"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..728
                     /locus_tag="VGD38_15425"
     CDS             <1..728
                     /locus_tag="VGD38_15425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729470.1"
                     /translation="NELRKAGIPDNRIGLLAPGSDDRDLERGLPVTDTEEPGMGRAMG
                     AAVGGAMGAAGGATLGLAVASLAVPGVGPVIAFGMVGAALLGVVGAATGAAVGDQVEE
                     ELGEGIPHEDIYLYEDALRHGRSVLIVYTDGDDETDKAEEVLVRSRAMDLDELRENWW
                     TELRDNERTYYHRDGRDFDQDEESYRRGYEAALHPRRRGKAYSEVEQDLQSAYVGELD
                     TAFREGYERGLAHHTRASEARNT"
     gene            916..2625
                     /locus_tag="VGD38_15430"
     CDS             916..2625
                     /locus_tag="VGD38_15430"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family metallopeptidase"
                     /protein_id="HEY0729471.1"
                     /translation="MQTHAEQTNYRQTPNYADTIAFAKQLADATPAIEYRGFGHSSQG
                     RELPLLIASETQTFTPEAARAASKAVVLIQACIHSGEPDGKDAGFALLRDIAITKTAA
                     GILNNVVLLFMPIYNTDGHERSTPFNRINQNGPESMGWRTTSTYQNLNRDYMKADTPE
                     TRAWLRLWNEWEPDLFIDCHVTDGADYRCNITYHHEHHAGIDEAVLEWERDVFDDKVA
                     KATENAGNVISWYLEFIDNRDLTLGTRDFNGSPRFSTGYVPLRNRPGILIETHMIKDY
                     RSRVIGTYDFLRAALTEVNNDPDRLIRIGREADMRTTDARRLYNPANLYPLDFELTDE
                     TTPFALKAFQYKTEQSEVSGDLRVIYGREPLDLTIPMYDTFRITAAVAPPLHYIVPVQ
                     WTSVIEVLHAHGIRFRSLAESTSIEVESYRFTNVRWPYEPFEGRHMPQFEVERTTETR
                     EFPAGSVVVPVAQPLGKLVLNLLEPEAPDSFAKWGFFNAIFEEKEYAEHYVLETLARA
                     MMQNDPELKREFEALLASDPDFAASPAARLRFFYKRSPYWDPQMSLYPVGRVTSSLDL
                     PLV"
     gene            3294..>4121
                     /locus_tag="VGD38_15435"
     CDS             3294..>4121
                     /locus_tag="VGD38_15435"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY0729472.1"
                     /translation="MALVCLAVVTFSLVIAASIVTYQRRQPPVQRINYSQLYLLAEAG
                     SAAALQIEGETMTVTRQDGSIVEATVTGEAPQNDVVQLFRKHNVPVEFRPLQPGVLIS
                     VLNYLLPVLTLGLIGVVAWRIYASMSGRGSFELTDHNGQQTVGFDDVAGVDEAKAELT
                     ETIEFLRNPERFSRLGGRIPRGILLYGPPGTGKTLLARAAAKEAGVAFLAASGSSFQE
                     KFAGLGAARVRHLFAKGRKLSPCIIFIDEIDALGRQRGRGGDSASADQDQTLNQLLVE
                     "
BASE COUNT          911 a         1192 c         1162 g          856 t
ORIGIN      
        1 tcaacgaatt acgaaaagct ggcataccgg ataacagaat aggattatta gctcccggca
       61 gtgacgaccg tgatttggaa cgtggtctac cggttacaga cacagaagaa cctggtatgg
      121 gccgagccat gggcgccgcc gtcggtggcg cgatgggtgc ggccggtggc gcaacgttgg
      181 gacttgcggt cgcgtcgttg gcggtgccgg gcgttggtcc agtgatcgcg tttggcatgg
      241 tgggcgcggc gttgctgggc gttgtcggcg cagctacggg tgcggcagtc ggcgatcagg
      301 ttgaagaaga gttgggtgag ggcatacctc acgaagacat ttatctttac gaagacgcgc
      361 tgcgtcacgg ccgctcagtg cttatcgttt acaccgacgg cgacgacgaa acagacaagg
      421 ccgaagaagt cctcgtgcga tcgcgcgcga tggacctcga cgagctgcgc gagaactggt
      481 ggaccgagtt gcgcgacaat gagcgcacgt attatcaccg tgacgggcgc gacttcgatc
      541 aggacgagga gagctatcgc cgtggttacg aagcagcgtt gcacccgcga agacgcggca
      601 aggcttacag tgaagtcgag caggatttgc agagcgcgta cgtgggtgaa cttgacactg
      661 cgttccggga agggtatgaa cgcgggctgg ctcatcacac gagagcctcc gaagctcgta
      721 acacctaagc ccgaaagctc gtaacagttg aaggatttcc ttttgaacgc tgccgtcctg
      781 atcgccattc tgggcggcag cgcactaatc acaggctggt tcacacgaac cgtgtacctg
      841 cgttgttcaa actgcggcac tctcaacgcg cgccgccggc aagagtgccg ctcttgcaaa
      901 cacacccttc gttaaatgca aacacacgct gaacaaacca actatcgtca aacaccaaac
      961 tacgccgaca ctatcgcctt cgctaaacaa ctcgccgatg ctacgcccgc gatcgagtat
     1021 cgcggtttcg ggcacagcag ccagggcagg gaattgccgt tgctcatcgc gtccgaaacg
     1081 caaacgttca cacccgaagc agcgcgcgcc gcgagcaaag ccgtcgtgct gattcaagcg
     1141 tgcattcact cgggcgaacc cgacggaaag gacgcgggct tcgcgttgct gcgcgacatc
     1201 gcgatcacga aaacagccgc cggcatcctc aataatgtcg tcctgctttt catgccgatc
     1261 tacaacaccg acggtcacga acgctccacg ccgttcaatc gcatcaacca aaacggtccg
     1321 gagtcgatgg gctggcgcac gacgagcacc taccagaatc tcaaccgcga ctacatgaag
     1381 gccgacacgc cggaaacacg cgcgtggctt cgtttgtgga acgagtggga accagacctc
     1441 ttcatcgatt gccacgtcac cgacggcgcg gattatcgct gcaacatcac ctatcaccac
     1501 gaacaccacg ccggcatcga cgaagccgtg ctcgagtggg aacgcgacgt ctttgacgac
     1561 aaggtcgcga aagcaaccga gaacgcaggc aacgtcattt cgtggtatct cgagtttatc
     1621 gacaatcgcg atctgacact cggcacacgc gacttcaacg gctcgccgcg tttctcaacc
     1681 ggctacgtcc cgctgcgcaa ccgtcccggc atcctgatcg aaacgcacat gatcaaggat
     1741 tatcgctcgc gcgtgatcgg cacttatgac tttcttcgcg ccgcgttaac cgaagtcaac
     1801 aacgatccgg atcgactaat tcgaatcggc cgtgaagctg acatgcgaac caccgacgcg
     1861 aggcgcctct ataatcccgc aaatctctat cccctcgatt tcgaactgac ggacgaaaca
     1921 acaccgttcg cactgaaagc gtttcaatac aagactgaac agagcgaagt ctcgggcgat
     1981 ctgcgcgtca tctacggccg cgagcctctc gatctgacga ttccgatgta cgacacgttt
     2041 cgcataacag ccgcagtcgc gccgccgttg cactacatcg tgcccgtgca atggaccagc
     2101 gtgatcgaag tgctgcacgc gcacggcata cgtttccgat cgttagcgga gtcgacgtca
     2161 attgaagttg agagttatcg gtttacgaat gtccgctggc cgtacgaacc gttcgaagga
     2221 cggcacatgc cgcagtttga agtcgaacgc acgacagaga cgcgagaatt tccggcgggt
     2281 tcggtagtag tgccggtggc ccagccgtta ggcaaactcg tactgaattt actcgaaccg
     2341 gaagcgcccg actcgttcgc gaagtggggc ttcttcaatg cgatcttcga agagaaagag
     2401 tacgccgagc attatgtgct cgaaacactc gcgcgcgcga tgatgcaaaa cgatcccgag
     2461 ctcaagcgtg aattcgaagc actgctcgca agcgatccgg acttcgcggc cagtcccgcc
     2521 gcgcggctgc gtttctttta caaacgttcg ccctactggg acccacaaat gagtctgtat
     2581 ccagtagggc gagtcacgag ttcgcttgat ttacctcttg tttgatagtg gacgcccgac
     2641 gagcttccgt ctatcgaacg gtaaggtgcc gggcgtcaag cagggcaaac agtgtgtttg
     2701 tttgcctaaa cgactgtcct acgtcctccg ataatgttga taagcagcac gaccagcgcc
     2761 aacaccagca atagatgaat gaatccacca atagtgtagc tactgaccac gccgagtaac
     2821 cacagaacca acaggatcac aaaaatcgtc caaagcattc tttctaccct ccttttgtca
     2881 accacgcacc aagtttcgcc ataagttcgt tggcacaaaa gcaatcgcga gtggtgagtg
     2941 caacgtccat gccgtttcgg atcgcgggct ttttgcgcca aatttgactg aatgcgtatt
     3001 aaaagtttcc actcatcttt aactcgtggc cgtttttaat cttccggctg gactaaacga
     3061 gatattggct gctaaagtgg cgcttgcgtt tgcacttctg cgaacgcatg ggagtgttac
     3121 gaacatctca gttcgcgcaa ggtccttcct tcgaagttcc gacgcttctc ctaacccgat
     3181 tctttgtgtt ttgaattaag tttcacgcgc cacccgcata cccccgggag gccgttctgg
     3241 aggttttttg tatgcctacc cccacgcccc gagtatccgt acgtactcgc cgagtggctt
     3301 tggtttgtct tgcagtcgtc acgttctccc tcgtcatcgc agcttcaatc gtcacctatc
     3361 agcgccgcca gccccctgtg cagcgcatca actattcgca actatatttg ctggctgaag
     3421 ccggcagcgc cgctgctctg cagattgaag gcgagacgat gactgtgacg cggcaggacg
     3481 gctcgatcgt ggaagccact gtcaccggtg aagcaccgca gaacgacgtg gtgcaactgt
     3541 ttcgcaagca caacgtgccg gtcgaatttc gaccgttgca gcccggagtg ctgatcagtg
     3601 ttttgaatta cctgctgccg gtgttgacgc ttggtttgat cggcgtcgtc gcctggcgca
     3661 tttacgcgag catgagcggc cgcggatcgt ttgagctgac cgatcataac ggccagcaga
     3721 cggtcgggtt tgacgacgtc gcgggcgtcg atgaagccaa ggccgagctc acggagacga
     3781 ttgagttcct gcgcaatccg gagcgtttca gccgtctcgg cggacgcatt ccgcgcggca
     3841 ttctgcttta cggtccgccg ggaacgggca agacgttgct ggcgcgagcg gcggcgaagg
     3901 aagccggcgt tgcgtttttg gcggcgtcgg gttcgagttt tcaggagaag tttgcgggac
     3961 tgggcgcggc gcgtgtgcgt cacctgttcg cgaaaggacg taagctctcg ccgtgcatca
     4021 tttttatcga cgagatcgat gcccttggcc gccagcgtgg ccgtggcggc gattccgcgt
     4081 cagccgatca ggatcagact ctaaatcaac tactcgtcga a
//
LOCUS       DASWTX010001012         2236 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_58059, whole genome shotgun sequence.
ACCESSION   DASWTX010001012 DASWTX010000000
VERSION     DASWTX010001012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2236
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58059"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1040
                     /locus_tag="VGD38_15440"
     CDS             <1..1040
                     /locus_tag="VGD38_15440"
                     /inference="COORDINATES: protein motif:HMM:NF019313.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="P-loop NTPase fold protein"
                     /protein_id="HEY0729473.1"
                     /translation="RCPPKQVVDVLQAIHLLLAFELFVVVVGVDARWIRHALRERYPK
                     MLSEDWSNGNAPKKGKERQDKFATPRDYIEKIFQVPFWLRPMDDSAAQKLLEGLIPVS
                     QISSGVEPDRNLPRADAAAAKATEATKSGAISAVGEQDLAESTTTMETLDGVDQETQA
                     NEKVAAAASGAGALVEQFELKPESLLLDIDERNTIVGLSRVIGKTPRTLKRFVNVYRI
                     IKAQLNGKELEAFVGTGPSDAQYRAVLILLAVAYGAPDVAASFFRALKNGKKEMGLKE
                     FLNLTYPSTFQPDWFVIEELNKFVNEYKVDIRVGVLCEWLPVVVRYTFQHGSLSEEVA
                     NRQARIVQERT"
     gene            complement(1178..1477)
                     /locus_tag="VGD38_15445"
     CDS             complement(1178..1477)
                     /locus_tag="VGD38_15445"
                     /inference="COORDINATES: protein motif:HMM:NF012621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HEY0729474.1"
                     /translation="MLRRITNLVVGGVLVLTLGVMTAAAFNKTVTIKVEGMKCPKCSG
                     SVAKALKATEGVEEAEVSSEKGEAVIKYDDQKLDETKLREVINKTGFKAVEQPKN"
     gene            complement(1458..1994)
                     /locus_tag="VGD38_15450"
     CDS             complement(1458..1994)
                     /locus_tag="VGD38_15450"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY0729475.1"
                     /translation="MKRRFILQGILLATMMIAFSPASVLGQQARAPQFVLKDIKGRIV
                     RLSDYKGKVVLINFWATWCPPCRAEMPDLVSLQREHGKEGLQIIGITYPPEKLDRVRR
                     FARNLKVNYPIVLGTRQLKARFSSEDTLPLTVVINRDGNVSEIISGILLREEFDEKIK
                     PLLIKNVEGEIRNVTSDH"
     gene            complement(2039..>2236)
                     /locus_tag="VGD38_15455"
     CDS             complement(2039..>2236)
                     /locus_tag="VGD38_15455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729476.1"
                     /translation="RAFRYRAEREATANALRVRAGKSIETGSRCSDGGWTFDGTTLRF
                     SREIATAAPDRPMPLVLQVKQ"
BASE COUNT          493 a          608 c          608 g          527 t
ORIGIN      
        1 accgctgtcc tccgaagcaa gtggtggacg ttcttcaggc catccatctc ctgttggcct
       61 tcgagttgtt tgttgtcgtc gtgggcgttg acgcgcgttg gatccgtcac gcactgcgcg
      121 aacgttatcc caaaatgctt agcgaggact ggagcaacgg taacgcgccg aaaaagggca
      181 aagaacgtca ggataagttc gcgacgccgc gtgattacat cgagaagatc ttccaggtgc
      241 cgttctggtt gagaccaatg gacgactcag ccgcgcaaaa gttgttggaa ggactaatac
      301 cggtgagtca gatctcatca ggcgttgagc ctgatcgcaa cctaccgcgc gccgacgctg
      361 ccgcagcgaa agccacagag gcaacgaaga gtggcgccat ctccgcggtt ggggagcagg
      421 acttagccga atcaacgact accatggaaa cgctcgatgg tgtggatcag gagacacagg
      481 cgaatgagaa ggtcgcggcg gccgcgtcag gcgctggcgc gctggtcgaa cagttcgagc
      541 tcaagccaga gagccttctg ctcgacatcg atgagaggaa tacaatcgtc gggctgtcga
      601 gggtgatcgg caagactccg agaacgttga agcggttcgt taacgtgtat cgaataatca
      661 aggcgcagct caatggtaag gagcttgaag ccttcgtcgg tacgggcccg tcagacgcgc
      721 aatacagggc tgtgcttata ctcctcgccg ttgcctatgg tgcaccggat gtcgcggcct
      781 ctttcttccg agctctcaag aatggaaaga aggaaatggg cctcaaagag ttcctaaact
      841 taacgtaccc ctccaccttt cagccagatt ggtttgtaat tgaagagctg aacaaatttg
      901 taaacgaata caaagtggac atacgcgtcg gcgtcttgtg tgaatggttg ccggttgttg
      961 ttcggtacac gttccaacac ggttccctgt cggaggaggt tgcgaatcgt caagcccgca
     1021 tagttcagga gagaacgtga tgacttcggt gacggaacct ttccagactg aacccggttg
     1081 gctgcataaa tacgaattca gggggcggat caaaagaggg ccggacgtct ctaacgagcg
     1141 catccggcct ccaagaaacc ccttgatctg aatggattta atttttcggc tgttccaccg
     1201 ctttgaaacc agtcttgttg attacttcgc gcagcttggt ttcgtccagc ttttggtcgt
     1261 cgtatttgat tacggcctcg cccttctcgg aactgacctc tgcctcttca acgccctcgg
     1321 ttgctttgag tgctttggca accgatccag agcatttcgg gcacttcatt ccttcaacct
     1381 taatggtgac cgtcttgttg aaagccgcgg cggtcatcac gccgagggtc aggaccagaa
     1441 caccaccgac aactagatta gtgatccgac gtaacatttc ttatctctcc ttccacgttc
     1501 tttatcaata gcggcttgat cttttcatcg aattcctcgc gaagaaggat gccgctgatt
     1561 atctcgctta cgttgccgtc gcgattgatt acgacggtta gaggtagagt gtcctctgaa
     1621 ctaaaacgcg ctttaagttg acgtgtgccg aggacgatag ggtagttgac tttcaggttt
     1681 ctagcaaatc ggcgcacgcg gtccagcttc tcgggcgggt aagtgatgcc gatgatttgc
     1741 aaaccttctt tgccgtgctc gcgctgcaga cttacgaggt ccggcatttc cgcgcggcat
     1801 ggtggacacc aggtggccca aaagttaatc aggaccactt tgcccttata gtcgctcaac
     1861 cgcacgatcc gtcctttaat atctttaaga acgaattgcg gcgctctcgc ctgctggccc
     1921 aaaacacttg ccggcgagaa cgcgatcatc atcgtcgcca gtaaaattcc ctgtagaata
     1981 aatcgtctct tcactgtatc cggctggcca tcgaactgtg ctctaactaa cgtgttccct
     2041 actgcttgac ctgcaacacc agcggcattg gtctatcagg cgccgcggtc gcgatctcgc
     2101 ggctgaatcg cagcgttgta ccgtcaaacg tccatccgcc atcgctgcaa cgcgatccgg
     2161 tttcgatcga cttccccgca cgcacgcgta gcgcgtttgc cgtggcctca cgctccgcgc
     2221 ggtagcgaaa cgcgcg
//
LOCUS       DASWTX010001013         5098 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_185494, whole genome shotgun sequence.
ACCESSION   DASWTX010001013 DASWTX010000000
VERSION     DASWTX010001013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5098
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185494"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2715)
                     /locus_tag="VGD38_15460"
     CDS             complement(<1..2715)
                     /locus_tag="VGD38_15460"
                     /inference="COORDINATES: protein motif:HMM:NF014214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005615 - extracellular space [Evidence
                     IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M36 family metallopeptidase"
                     /protein_id="HEY0729477.1"
                     /translation="MIRKFLIFTVLAVAAAAAMVLPFWKSDAAPQRTSIGSPKASAAL
                     PNFDIRLTGRGEFNDMDLNSTSGKQNAMQNARTRSRAAAVDQFRSSLKAENAGRLRAE
                     VNEAGAMKNFFIDGGTLSEPRSDTADNIARNFLERHSSVFALSGGNTQELILENEDND
                     RGTRFLNYTQTVGGLKVFEGQVQIVVNNHGEVLNVREGFLADGPPLKRKGAMNDAKAI
                     SKAFEHAGRNVFPSIVEVSSRTSATEMSRFANPLDVSFEEVLSEQNVVSINGESRLAW
                     HVYVEVGPDEWYEILLDAFTGELLLRHNLYVHQAQGTVYTEAPDKGARQLVSFVGDTV
                     INTAAGWMGTSTVTTGNNVEAYLDTNADNVPDANNTTGLSNGHASSATQDFTFPFSTT
                     VDPRTQQAAVVTNLFYYNNVMHDFSYALGFTETSRNFQVNNFGRGGTGNDSVRAEAQD
                     GSGTNNANFATPPDGSRPRMQQFLFTSPNPDRDSSVDGDVVFHEYGHGISNRLIGNGS
                     TALSGIQSGAMGEGWSDYWAITLNNDGAVGEYSTGNPNGIRRAVYSVPAAAVHDSYAD
                     LGSVSVHNDGEVWAATLWDLRTQLGAATTDLLVLNGMKFTPTRPSFLNARDGILQADQ
                     NLNGGANRCAIWTVFARHGMGVSAVGNDGTTHTAATNVPADCGGTCSFSINPTSASFA
                     AAGGTGSVTVTTQAGCNWTAASNSSFITVTSGASGSGSGTVSYSVAANTATTSRSGSL
                     TIAGLTHSVSQAAAGGGGCTNAIVNPGFETGTTPWTISGQVSRSTGAFPHSGTAYMIL
                     NGVNSSSGTLFQTVTVPSGCSNLSFWLNITTNEAAGASVFDRLFVEVRSTTGTLLATV
                     TTFSNQNSGTAGVYVLRGPFNLSAFAGQTVRIQFRGTNDITLPTVFRVD"
     gene            complement(3270..>5098)
                     /locus_tag="VGD38_15465"
     CDS             complement(3270..>5098)
                     /locus_tag="VGD38_15465"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY0729478.1"
                     /translation="LYESRYYRSDLQSLRLWPLKRDDTRPFFMSTPRLLDKDQIDWRV
                     TFADPRVDELFRLDVAPHPLSYIAELLGLDKADEHLLLPLLSEDDKARPEQWDGPTAR
                     IRYFGHACVVVEWNGISIMTDPYVGARPIEGGLERFSYGDLPAQIDYALVTHIHQDHF
                     ALETLLRLRHRIKHLVVPKASGILYGDMSLKLMARKLGFRSVIELDPLESVGDGDVSI
                     IGVPFLGEHGDLAHSKSGYVVRLGEQQILFGADSDCLDRQMYVNVREALGRIETVFLG
                     TESVGAPLFWGCGPLFPIKQDRHYEQTRRYHGSNARAALEILETVGARRIYNYAMGME
                     PWVEHLLGLGLTEHDPQYIESEKLIHKAHGRGLVAAERLYGKRDLYLPVSAPMESHAS
                     GASSEQLWQYERLLDGIEPLFGNGTRDTQYVRQAFTLPAGLCASLRNFSKDFLLTAWL
                     ATLHHYTGRDELFVRVSGEATRFLHVDLSGNPSVNALLARVAAVTERTQLDRNHHAAI
                     QLRFELTEEGDSQFETHEGGHEFGLFLTETGHEINGTAEYNPQLLDALAVSEMIEHFQ
                     HVAEVFTTHPEWRLDDALRHAAECLVTLTATETPDTEDQFAF"
BASE COUNT         1070 a         1444 c         1485 g         1099 t
ORIGIN      
        1 gtcaaccctg aataccgttg gcaacgtgat gtcgttcgtg ccgcggaatt ggatccgcac
       61 tgtctggccg gcgaaggcgc tgagattgaa gggtcctctc aacacgtaca cgcccgccgt
      121 gccgctgttc tgattgctga acgttgtcac cgtcgccagc aacgttccgg tcgtactccg
      181 cacttcaacg aagaggcggt cgaaaaccga tgccccagcc gcttcgttcg tggtgatgtt
      241 tagccagaac gacaggttcg aacagccact cggaacagtt accgtttgga acagagtccc
      301 gctggaacta ttcacgccgt taagaatcat gtaggcagtt ccgctgtgcg ggaatgctcc
      361 cgtgctgcgg cttacctggc cactgatggt ccatggcgtc gtgcccgttt cgaatcccgg
      421 gttaacgatc gcgttcgtac atccgccgcc tccagcagcg gcctgcgaca cgctgtgcgt
      481 caaaccagca atcgtcaacg aaccgcttct cgaagtggtc gcagtgtttg ccgcaacaga
      541 gtagctcacc gtgccactac cggaaccact cgcgcccgat gtaacagtga tgaacgagct
      601 gttgctcgca gcggtccagt tgcaaccagc ttgcgtcgtc accgtcacac ttcccgttcc
      661 acccgccgcc gcaaagctcg cgctcgtcgg attgatcgag aaggaacaag tgccaccgca
      721 atccgcgggt acgttggtag ccgcggtgtg cgtcgtgccg tcgttgccga ccgccgacac
      781 gcccatgccg tgacgtgcaa acacggtcca gatcgcgcaa cgatttgctc cgccgttcag
      841 gttctgatcg gcctgcagga taccgtcgcg tgcgttcagg aatgatggac gcgtgggcgt
      901 gaacttcatt ccgttgagca cgagcaggtc tgttgttgcg gcgccgagtt gcgtgcgcag
      961 atcccaaaga gtcgcggccc agacttcgcc gtcgttgtga accgagacgc tgccgaggtc
     1021 ggcgtaagaa tcgtgcacgg ctgcggcggg aacggaataa acagcacgcc ggatgccgtt
     1081 cggattgccg gttgagtact cgccaacagc accatcattg ttgagcgtga tggcccaata
     1141 atcagaccaa ccttcaccca tcgcgcccga ctgaatgccg cttaaagcgg tactgccgtt
     1201 gccgatgaga cggtttgaga tgccgtgtcc gtattcatgg aacacgacgt cgccgtcaac
     1261 cgaactatcg cggtcgggat ttggcgaggt gaacagaaac tgttgcatgc gcggacgcga
     1321 accgtctggc ggcgtcgcga agtttgcatt gtttgttccc gaaccatcct gcgcttccgc
     1381 tcgcactgag tcgtttccag tgccgccgcg gccgaagttg tttacctgga agttgcgcga
     1441 agtctcggta aagccaaggg cgtacgagaa gtcgtgcatg acgttgttgt agtaaaaaag
     1501 attcgtcacg actgcggcct gctgtgtcct tggatcgact gtcgtcgaga aaggaaacgt
     1561 gaagtcctgc gtggccgacg aagcatggcc gtttgacaaa cccgtggtgt tgttggcatc
     1621 gggcacattg tcagcgttgg tatcgagata ggcctcgacg ttgttgccgg tggttacggt
     1681 tgaagttccc atccagcccg ccgccgtgtt gatgacggtg tcgccgacga atgaaacgag
     1741 ttggcgcgcg cctttgtcag gcgcttcggt gtaaaccgtg ccttgcgctt ggtgcacgta
     1801 aaggttgtgg cgaagcagca gctcgccggt gaaagcgtcg agaagaattt cgtaccactc
     1861 atccggaccg acttccacat agacgtgcca cgccaggcgg ctctcgccgt tgatgctcac
     1921 cacgttttgt tccgagagca cttcctcgaa actcacgtcc agcggatttg cgaagcgaga
     1981 catttccgtc gccgacgttc gagaagaaac ctcgacaatc gacgggaaga catttctacc
     2041 cgcgtgttca aacgctttcg agatggcctt tgcgtcgttc atcgcgcctt tgcgtttgag
     2101 cggtggtcca tcggccagga atccttcgcg aacattgagt acttcgccat gattgttgac
     2161 gacgatctga acctgtcctt cgaatacctt caggccgccg acggtctgcg tgtagttaag
     2221 gaacctggtt ccgcggtcgt tatcttcatt ttcgagtatc aactcctggg tattgccgcc
     2281 cgaaagcgcg aagactgagc tatgtcgctc aagaaaattg cgggcgatgt tgtcggcggt
     2341 atcggatcgg ggttcggaaa gagtgccgcc atcgatgaag aagttcttca ttgcgcctgc
     2401 ttcgttaact tctgcgcgaa gtcttccggc gttctcagct ttgagagacg aacggaattg
     2461 atcaactgcg gcagcgcgag agcgagtgcg agcgttttgc atcgcgttct gcttgccgga
     2521 agttgagtta aggtccatgt cattaaactc gccgcggcca gtcaggcgaa tgtcaaagtt
     2581 tggcagggcg gcggatgctt ttggagatcc gattgacgtt cgttgcggtg cagcgtctga
     2641 tttccaaaac ggcaggacca tggcagccgc agcggccaca gcgagaactg tgaagatcaa
     2701 aaacttacga atcattagcg cctcctttgg cttggttgag gtaaggcagc actcgcccgt
     2761 ttctttgtac aagatggaaa tgcctggtcc acctcatcgc gttgatcagg agagaaatgc
     2821 cctagcttgt cttttaacta gtaccgtgaa ccgagaattg cacgggctga gtgaaagtaa
     2881 gctgggaggt tgtacttgcc tggaaccgag aggcgcacag cgtagcagat tgccgtagga
     2941 gtgtaaattg gaatccgggc ggcgccgtga ttagggtacg acgttgcaca gttgaggttg
     3001 aaccgggagc acggggttca gttgaacagg aagcacggtt cagtttgaat acgccgaagg
     3061 cgttggccaa tttcagccca gaggttggaa caaccctggg aaacataaaa gccccaccgt
     3121 aaaaacgctg aaagcgttgg cgagccgcgg aaggcactcg ccaacgcttt cagcgtttac
     3181 tccgatttgg tattggtacc cagggttgtc gcgctgcgcc aaccctgggc tcacattagc
     3241 taacgccttc ggcgtttgag cggatggttc tagaaagcaa actgatcttc ggtgtcgggt
     3301 gtttctgtcg cggtgagcgt tacgaggcat tccgctgcat gccggagcgc gtcgtccaga
     3361 cgccattcgg gatgagttgt gaaaacttct gcaacgtgct ggaagtgttc gatcatttcg
     3421 gacacggcaa gcgcgtccaa cagttgcggg ttgtattcag cagttccgtt gatctcgtgg
     3481 cctgtctcgg tcaggaatag accaaactcg tgcccgcctt cgtgcgtttc gaattgagag
     3541 tcaccttctt ccgttagctc gaagcgcaac tgaattgctg cgtggtgatt tcgatcgagc
     3601 tgcgtccgct ccgtcactgc ggcgacgcgc gcaagcaaag cgttgaccga aggattgccg
     3661 gagagatcta cgtgaaggaa gcgtgtcgcc tcgccggaca cacgcacaaa caactcatcc
     3721 ctgcccgtgt agtgatgaag tgttgcgagc caggccgtga gtagaaaatc cttactgaag
     3781 tttctcaacg aggcgcagag gccggccggc agggtaaaag cttgccgaac gtactgcgta
     3841 tcgcgagtgc cgttaccaaa caaaggttca atcccgtcga gcagccgctc gtactgccaa
     3901 agttgctcgg aagacgcacc ggaggcatgc gactccattg gagccgagac aggcagataa
     3961 agatcgcgct tcccatacaa acgctcagcc gcaaccaatc cgcgcccgtg cgctttgtgg
     4021 atcagcttct ccgactcgat gtactgcggg tcatgctcag tcaatcccaa cccgagcaga
     4081 tgctcgaccc acggctccat ccccatagca tagttataaa tcctgcgcgc gcccaccgtc
     4141 tccagaatct cgagcgccgc cctcgcattg ctcccgtggt aacgccgcgt ctgctcgtaa
     4201 tgccggtcct gcttgatcgg aaacagcggc ccgcaacccc agaacaaagg cgcacccacg
     4261 gattcagtcc cgagaaacac ggtctcaatc cttccgagcg cctcgcgtac attgacgtac
     4321 atctgccgat cgagacagtc ggaatccgcg ccgaagagta tctgctgctc gccgagccgc
     4381 acgacgtatc ccgatttgct gtgcgccaga tcgccatgct cgccgagaaa tggaacgccg
     4441 atgatactga cgtcaccgtc gccgacactc tcgagcggat ccaactcgat aacgctgcgg
     4501 aacccgagtt tgcgcgccat gagtttcagc gacatgtctc cgtaaagaat gccggacgct
     4561 ttcggcacga cgaggtgctt gatcctgtga cgcagccgca gcagcgtctc gagcgcgaag
     4621 tggtcctgat gtatgtgcgt gacgagcgca taatcgatct gcgccggaag atcgccgtaa
     4681 gaaaatcttt ccaagccgcc ttcgatcggt ctcgcgccga catacggatc ggtcatgatc
     4741 gaaatcccgt tccattcgac gacgacgcag gcgtgaccga agtagcggat gcgcgccgtt
     4801 ggtccatccc actgttcagg ccgcgccttg tcgtcttcgg ataacagcgg caacagcaaa
     4861 tgttcatccg ccttgtcgag cccgagcagt tcagcgatgt acgatagcgg gtgcggcgcg
     4921 acgtcgagtc gaaagagttc gtcaacgcgc gggtcggcga acgtcacgcg ccaatcgatc
     4981 tgatctttgt cgagcagacg cggcgtgctc atgaagaacg gacgcgtgtc gtcacgcttg
     5041 agcggccaaa gacgcagtga ttgcagatcg cttcgatagt agcggctctc gtacaaca
//
LOCUS       DASWTX010001014         4422 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_387765, whole genome shotgun sequence.
ACCESSION   DASWTX010001014 DASWTX010000000
VERSION     DASWTX010001014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4422)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4422)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4422
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387765"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1646)
                     /locus_tag="VGD38_15470"
     CDS             complement(<1..1646)
                     /locus_tag="VGD38_15470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729479.1"
                     /translation="MKRSAFIYSAILILALANFAVAQKPAAAANPLPKPNAPELLALE
                     DVRPGMKGVARTVFSGSDTQEFGVEILGVLPGFPGPRQSAIIGRLSGSNVDRTGVFAG
                     MSGSPVYIDGKIVGAIAFSFPFSKEPIAGITPIKQMIDLFTTGSEENQKPKEPRAVSF
                     AQLASVEWKPDLPKPAVTGAPLIAPVAAGSPLLPYLGQQMMPIATPLVFGGITQESLS
                     MFAPQLLANGLLPVSGAGGSAAITPLAEVTEKTFPPGSSISVQLVRGDYSLAAAGTVT
                     MRDGNRIYAFGHPFLSLGASDMPMTESSVVTVIPNANNSFKLAVPGRMVGSISQDRAS
                     GIFGLLGQAPKMIPVKVNLHTSRDRTETYSYEVATDSFLTPLLLNITLFNTITSSERA
                     LGDSTISVQGEIRLKGQDPIKVDRRFSANNSPIMAAGSIAAPVSALLTSGFDDVQLDG
                     ITLDISSSETKYAGTLERITLDRTEVRRGEKVEVQAFVRTESGKQFVQRIPLEIPNDA
                     ALGQLLVFVGDGGALQEGSPSKAFVPQDLSQLVRAINTVK"
     gene            1691..2305
                     /locus_tag="VGD38_15475"
     CDS             1691..2305
                     /locus_tag="VGD38_15475"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0061603 - molybdenum cofactor
                     guanylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HEY0729480.1"
                     /translation="MDGRLQIKISQLQAFILAGGQSRRMGRDKSQLLLENQTFTDRIA
                     ETLLEVAESVTLVGSRQTNSLYAVTPDIYPEWGALGGVHAALAACRTEWAIVVACDLP
                     FVTAELFNYLASLRNGHDAVIPLQPDGRPQPLSSLYRIEPCLQRATELIEAGKRRPLD
                     LLELVNTRWVPFNELRNLDQAEKFFVNINTPDDYDAVSPVRERR"
     gene            2359..3261
                     /locus_tag="VGD38_15480"
     CDS             2359..3261
                     /locus_tag="VGD38_15480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729481.1"
                     /translation="MLVIGLAVVGFFSYVVYCVSRPAKRPYVVTPQAFSQISGRAIKV
                     TDETWTTQDGRQARGWLLKGAEGAPAVVLLHRYGGDRSWLFNLGVKINETTNFTILWP
                     DLRGHGETPLVKWTSLGAHESNDLLAALEFLRTLQSENRKKLVGDMFGVYGVELGAYS
                     ALKAASREPQIKVLVLDSVTSSPDALLKTAVSNCIGVDNGFVQYLSRTAMKTYLFGGF
                     DSTPACDIARSNSQVRVMLLSGNDAGHLKDETASLQSCFAVPTNVETRTDLPLSGFSL
                     PSATGEQGEAYDRIVIEYFDRNLR"
     gene            complement(3266..>4422)
                     /locus_tag="VGD38_15485"
     CDS             complement(3266..>4422)
                     /locus_tag="VGD38_15485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729482.1"
                     /translation="TTTWALAFFVLGELRREKRSAFLIGFYISVGLSLLAKGLVGIVI
                     PFGVVGVYYLLRRAWPARKVWLSVFWGLPLAALVSAIWYGPVIARHGWSFVDEFFIQH
                     HFARYVSNKYHHPQPIYFYPAIILMLTLPWTAFLVESLVKARRWTWRGDDGLSIVRVF
                     ALAWLAMPIVFFSFSGSKLPGYILPALPAAAFLIADRFIHWTAKWPLRATGVICLALA
                     TGGFVYALQSREITVTCATLIAMPLLAAAVASFAKQGEHLISPVLICGAIFVLVMTVA
                     ICAAPSVGQRESVKDLLQLADARGYANAPVIAQRSDDRSAQFYAHDRVVYNADGEPIT
                     FDEITLEQARGLGERFVVFIPLEYANNFKTAPNIEVIGDNGRLAVLGWKP"
BASE COUNT          976 a         1295 c         1268 g          883 t
ORIGIN      
        1 ttcttcaccg tgttgattgc tcttaccaac tgactcagat cctgcggtac aaacgctttc
       61 gatggtgaac cttcctgcaa cgctcctccg tcgccgacaa acaccagcaa ctgtcccagc
      121 gccgcgtcgt tcggaatttc aagcggaatt cgttgcacaa actgcttgcc cgactcggtt
      181 ctcacaaacg cctgcacttc gactttctca ccgcgccgca cttccgtgcg atccaaagtg
      241 atccgctcga gcgtgccggc atacttggtt tccgacgacg aaatgtcgag cgtgatgccg
      301 tcgagctgaa cgtcgtcgaa cccgctggtc aacaacgcac tgaccggcgc tgcaatcgag
      361 cccgcggcca tgatcggcga attgttggcg gaaaagcgcc gatcgacctt gatcggatcc
      421 tgtcccttga ggcggatttc gccctgcacg ctgatcgtcg aatcgcccag cgcgcgttcg
      481 ctcgacgtga tcgtgttgaa aagcgtgatg ttcagcagca gcggcgtcaa aaacgaatca
      541 gtcgccactt cgtacgagta cgtctcggtg cgatcgcggc tcgtgtgcag gttaaccttg
      601 accgggatca tcttcggcgc ctgaccgagc agtccaaaga ttcccgacgc gcgatcctgc
      661 gagatcgaac cgaccatgcg tccaggcacg gcgagtttga aagagttgtt tgcgttggga
      721 attaccgtca ctaccgacga ctcagtcatc ggcatgtccg aagcgcccag gctcaaaaac
      781 ggatggccaa acgcgtagat gcgattgccg tcgcgcatcg tcaccgttcc ggcagccgcg
      841 agtgaataat caccacgcac gagctgcacg ctgatcgagc tgcccggcgg gaacgttttc
      901 tcagtcactt ccgcgagcgg cgtgatcgcg gcggaaccac cagcacccga aaccggcaac
      961 agtccattcg ccagcaactg cggcgcgaac atcgacaacg attcctgagt gataccgcca
     1021 aaaacaagcg gcgtcgcgat cggcatcatc tgttggccca aatacggcaa cagcggcgaa
     1081 ccagccgcca caggcgcgat caacggcgcg ccggtaaccg cgggtttcgg cagatccggc
     1141 ttccattcga ccgaagcgag ttgtgcaaac gaaaccgcgc gcggctcctt cggcttctgg
     1201 ttctcttccg atcccgtagt gaagagatcg atcatctgct tgatcggcgt gatgcccgcg
     1261 atgggttctt tcgaaaacgg aaaactgaaa gcgatcgcgc cgacgatctt gccgtcgatg
     1321 tagacgggtg aaccagacat gcccgcaaag acgccggttc gatccacgtt tgaaccactc
     1381 aaccggccga tgatggccga ttgacgcgga ccggggaacc ccggcaacac gccgagaatc
     1441 tcgacgccga attcctgtgt gtcactgccg ctgaagactg tccgcgcgac gcccttcatg
     1501 cctggacgaa cgtcctcgag agccaaaagc tccggtgcgt tcggtttggg caaggggttg
     1561 gccgcggcgg ccggcttctg ggccacagca aaattcgcca atgccaggat aagtattgcg
     1621 ctgtaaataa aagcagatct tttcatcgtg tcgaactata aacttcgggt tagaagcggg
     1681 tcaagataag atggatggca ggttgcagat aaaaatttca cagcttcaag cctttatcct
     1741 cgccggtggc caatcgcgca gaatgggtcg tgacaagtct cagcttctgc ttgaaaacca
     1801 gacgttcact gaccgaattg ccgaaacgct gctcgaagtt gccgaatcgg tgacgcttgt
     1861 cggttcacgt caaacaaact cgctttatgc ggtgacgccg gacatttatc ccgaatgggg
     1921 cgcgctcggc ggcgtgcacg ccgcgctggc ggcgtgccgc actgaatggg ccatcgtagt
     1981 cgcctgcgac ctcccgtttg tcactgccga gctcttcaac tatctcgcgt cgttgcgcaa
     2041 cggccacgat gccgtgatac ctttgcaacc cgacggtcga ccgcaaccgt tgtcctccct
     2101 ttaccgtatt gagccgtgtc tgcaacgggc caccgaactg atcgaagcgg gcaagcgccg
     2161 gccactcgat ctattagaac tcgtcaacac ccgttgggtt ccatttaatg aactcaggaa
     2221 tctcgatcag gcggaaaagt tttttgttaa catcaacacg cctgacgact atgatgcagt
     2281 gagccccgtg cgagagcgac gctgatgcca ccgcgaagaa gatttggtaa aaggctcctc
     2341 aagtctttcc tgccaatagt gctggttatt gggctggcag ttgtcggatt tttctcttac
     2401 gtcgtctatt gcgtctcgcg cccggcaaaa cggccttacg tagtcacgcc ccaggcgttc
     2461 tcacaaatca gcggacgcgc gatcaaagtc acagacgaaa cctggaccac gcaggacggg
     2521 cggcaagccc gcggctggtt gctgaaaggc gctgaaggcg cgccggctgt ggtgctgctg
     2581 catcgctacg gcggcgatcg atcgtggctg ttcaacctcg gcgtcaagat caacgagacc
     2641 acaaacttca cgatcctctg gcccgacttg cgcggtcatg gcgaaacgcc actcgtgaaa
     2701 tggacttcgc tcggcgcgca tgaaagcaac gatctgctcg ccgcgctcga gtttctgcgc
     2761 acgctgcagt cggagaacag aaagaagctc gtgggcgata tgttcggtgt ttacggcgtg
     2821 gagctgggtg cgtacagcgc gttgaaagcg gcgagccgtg aaccacagat caaggtgctg
     2881 gtgctcgact cggttacgag ctcaccggat gctttgttga agaccgccgt ctcaaactgt
     2941 atcggggtcg ataatggttt cgtgcagtat ctctcgcgca cggcgatgaa gacttacctc
     3001 tttggtgggt tcgacagcac gccggcttgc gacatcgcgc gttcaaacag ccaggtgcgt
     3061 gtgatgcttc tctcgggcaa cgatgcggga cacttaaaag acgagaccgc gtcgctgcaa
     3121 agctgtttcg cggttccgac gaatgtggag acgcgcaccg atctgccgtt gagtggtttc
     3181 agtttgcctt cggcgaccgg cgaacagggc gaagcttacg atcgcatcgt cattgaatac
     3241 ttcgatcgca acctccgtta accaatcacg gtttccaacc gagaacggca agtcttccgt
     3301 tgtcgccgat cacttcgata ttcggcgcgg ttttgaagtt gttggcgtac tcgagtggga
     3361 tgaagacgac gaatcgttcg cccaggccgc gtgcttgttc taacgtgatt tcgtcaaaag
     3421 tgatgggttc tccgtctgcg ttgtaaacga cgcgatcgtg tgcgtagaac tgcgcggagc
     3481 gatcgtcgct gcgctgggcg atcacaggcg cattcgcgta accgcgcgcg tcggcgagtt
     3541 gtaaaaggtc tttgacggat tcgcgttggc ccacggacgg cgccgcgcag atcgcgacgg
     3601 tcatcacgag cacgaagatc gcgccgcaga tcagtacggg cgagatcaaa tgctcgcctt
     3661 gttttgcgaa cgaggctacg gcagcggcga gtagcggcat ggcgatcagc gtcgcgcaag
     3721 tgactgttat ttcgcgcgac tgaagtgcgt aaacgaagcc gcctgtcgcg agtgcgagac
     3781 agatcacgcc cgtggcgcgt agcggccatt tcgccgtcca gtgaatgaaa cgatctgcga
     3841 tgaggaaagc ggccgccggc agtgccggca ggatgtagcc cgggagtttc gagcccgaga
     3901 acgagaaaaa cacgatcggc atcgccagcc acgccagcgc aaacacacgc acgatgctca
     3961 agccgtcgtc accgcgccac gtccagcggc gagccttaac taacgactca accagaaacg
     4021 cggtccacgg caacgtcagc atcaaaatga tcgcggggta aaagtagatc ggctgcgggt
     4081 ggtgatactt gttcgaaacg taacgcgcga agtgatgctg gatgaagaat tcgtcgacga
     4141 acgaccatcc gtgccgcgcg atgactggtc cataccagat cgctgagacc agtgcggcca
     4201 gtggaagccc ccaaaataca ctgagccaaa ctttgcgagc gggccacgcg cgtctcagta
     4261 agtagtaaac accaaccact ccaaagggaa tcacgattcc cacgaggcct ttagcgagca
     4321 gcgacaaacc cacggagatg taaaacccga ttagaaaagc ggatcttttt tcccgccgta
     4381 gttctccgag cacaaaaaac gcgagcgccc acgtagtcgt ca
//
LOCUS       DASWTX010001015         4290 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_168987, whole genome shotgun sequence.
ACCESSION   DASWTX010001015 DASWTX010000000
VERSION     DASWTX010001015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4290
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168987"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1945
                     /locus_tag="VGD38_15490"
     CDS             <1..1945
                     /locus_tag="VGD38_15490"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY0729483.1"
                     /translation="VELLRHKEIYFRRFAADALIDLAPETQSIQHALRRALRDEDSMV
                     AADAARALGALGHRASPSVPALVKALSHEEPHVRIYAAEALANIGPKASAATNELARA
                     LRDPIPGVRWAAGEALAGIGPAAHSAVPQLIEALKDEFLYVRICAVEALGSIGPKAHA
                     ARDALRASANEPALRNQAEWALNLIAGVKTGKTVVSPAVSGLSITPPKTVIHTGNPPV
                     DWDPRTGRNIVWSVELGNEVYGSPVVAGDVVYVGSDNTRRFNPAFQDDSGVLMAFRVK
                     DGAFLWQDVAPRVERGLREWLLPSTTSAPYVEGDRLYYVTAECQLRCVDTRGFSDGEN
                     DGPYQGEIFKDNAAADIIWQLDIPALGVFPHEACNSDVLALGDLLFVNTSNGQNEAHT
                     RVPSPRAPSLLAVNKHSGEVVWRAVGPGDRVLHGDWSSPVAANVNGRMQVLFGGGDGW
                     LRAYDAASGQEIWRFDGNPKDARFLPRAGVFSRSSIIASPVFADGRVFIAMGQSAGHH
                     NAPSLVHAIDPNGHRDVTKSGLLWTSREVGRVLGTPVVKDGLLYVGDLGGTVHCLDAA
                     TGAHLWKHETNDPIWGSILLAGDRLYVGNDQGLMTVLRAGRRKELLGQIEMDAPLYSR
                     PTADGDVLYVATGNRLYVIAAKP"
     gene            complement(1926..3332)
                     /locus_tag="VGD38_15495"
     CDS             complement(1926..3332)
                     /locus_tag="VGD38_15495"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEY0729484.1"
                     /translation="MIDRIRVKAGGRGAPVPTLTLKDAIAITVGIVVGAGIFRTPSLV
                     AANASSESVALLIWLAGGLVTLAGALCYAELATTYPHTGGDYHYLTRAYGRPLAFLYA
                     WSRITVVQTGSVALLAFVVGDYASQLFSLGTYSSSVYAAIVVVALTALNVAGVRQGSG
                     AQNWLTAVEVLSLILVIIAGFAVATWGEPVAAAAPAQTAPQASLGLALVFVLLTYGGW
                     NEAVYVSAEVRNPRRNIARALLISIALITALYLLVNWAFLRGLGLEGLAASDAAAADL
                     MRRATGEGGARFVSVLIAVSALTSANATIITGARTNYALGRDFRLFDYLGRWHERAQT
                     PSNALLVQGVISLALVFAGSFAREGFTAMVEYSAPVFWLFFFLAGLSLIVLRTKEPEK
                     ERPFSVPLYPLTPILFCMACLYMLQSSLTYAGAGAIAGVIVLLVGLPVLLFAWQRERR
                     SVDEDKRYQMPRIKASPR"
     gene            complement(3363..4022)
                     /locus_tag="VGD38_15500"
     CDS             complement(3363..4022)
                     /locus_tag="VGD38_15500"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025217.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY0729485.1"
                     /translation="MRKATLPWLCVVIVTVFGAVVAACAAAQQGEVKQQIPPATSQQS
                     PEITKQPTQVKKDVPYVPTPQNVVDEMLKLANVTKDDVVYDLGSGDGRLVITAVKKFG
                     ARRGFGVDIDPDRVAESNVNAKTAGVTDRVQFAAQDLFQTDLKDATVVTLYLLPEVNL
                     RLRPKLLSELRPGTRVVSHAIDMGDWTPQKTVTVQPGGQRLMLWTIPAKTAQPAPTAT
                     P"
BASE COUNT          859 a         1281 c         1289 g          861 t
ORIGIN      
        1 agtcgaactg ctgcgacaca aggagatcta cttccgtcgc tttgccgctg atgcgttgat
       61 cgatctcgcg cctgagacac aatcgattca acacgcgttg agacgtgcat tgagagacga
      121 agattcgatg gttgcggctg atgctgcacg cgctctcggc gcattgggcc acagggccag
      181 tccctccgtg ccggcgctgg tcaaagctct gtcgcacgaa gaaccacacg ttcgcattta
      241 cgcagcggaa gctttggcga acatcggtcc gaaagcgagt gcggcgacta acgaactcgc
      301 aagagccttg cgcgatccga ttcccggcgt gcgatgggcg gcgggtgagg ccctcgcggg
      361 catcggaccg gccgcgcatt cagcggtgcc acagttgatc gaagcgctga aggatgagtt
      421 tctttatgtt cgcatctgcg cggtcgaggc gctgggaagc attggaccaa aggcccacgc
      481 agctcgagac gcgttgcgag cgtccgcgaa cgagcccgct ttgcgtaacc aggctgagtg
      541 ggcgttgaat cttatcgcag gcgtaaagac tggaaagact gttgtctcac ccgctgtgtc
      601 ggggctgtcc atcacgcctc cgaagactgt gattcacacg ggcaatcctc ccgtcgattg
      661 ggatccgaga acggggcgca acatcgtctg gagtgtcgag ttggggaacg aagtgtatgg
      721 cagtcccgtg gtcgccggcg atgtggtcta tgttggctcc gacaatacgc ggcgattcaa
      781 ccccgccttt caggacgatt caggtgtgct catggcgttt cgcgtaaaag atggcgcgtt
      841 cctttggcag gatgtggcgc cacgcgtgga gcgcggtcta agagagtggc tgttgccgtc
      901 gacgaccagc gctccttatg tcgaaggcga tcgcttgtac tacgtcactg ccgagtgtca
      961 gctccgctgt gtcgacacgc gcggcttcag cgacggtgag aacgatggtc cataccaggg
     1021 agagattttc aaagacaacg cggcggccga catcatctgg caactcgata ttcccgccct
     1081 cggcgtcttt ccacacgaag cttgcaacag cgatgtgttg gcgctaggcg atctgctctt
     1141 cgtcaataca tcgaacggac agaatgaagc tcatacgcgc gtcccatcgc cgcgcgctcc
     1201 gagtttgctc gcggtgaaca agcactcggg tgaagtggtg tggcgtgcgg ttggaccagg
     1261 agatcgagtg ctgcacggcg actggtccag tcccgtcgcg gccaacgtca acggtcgcat
     1321 gcaggtgctc ttcggcggcg gcgacggctg gctgcgcgcg tacgacgcag cgtccggtca
     1381 agagatctgg cgttttgacg gcaacccgaa ggacgcacgc tttcttccgc gcgccggtgt
     1441 cttttcgcgc agttcgatca ttgcttcacc cgtcttcgcg gacggacgtg tcttcattgc
     1501 gatgggccag tctgccggcc atcacaacgc gccttcgctg gtccatgcga tcgatcccaa
     1561 cggccaccgc gacgttacca agagcggact tctctggacg tcgcgcgaag tcggccgcgt
     1621 gctgggaacg cccgtagtga aagacggttt gctgtacgtt ggagacttgg gtggaaccgt
     1681 tcactgcctc gacgcggcaa ccggcgccca cctgtggaag cacgagacga acgatccgat
     1741 ctggggttct atcctgctcg ccggcgatcg cctttacgtc ggcaacgatc aaggtctgat
     1801 gaccgttctt cgtgccggac ggcgaaagga attgctggga cagatcgaaa tggacgcacc
     1861 gctctattcg cgtcccactg ctgacggcga tgtgctttac gtggccacgg ggaaccgctt
     1921 gtacgtcatc gcggcgaagc cttgatgcgc ggcatttgat accgcttatc ttcatcaacc
     1981 gatcggcgtt cacgctgcca cgcaaacaac agaaccggta agcctacgag cagcactatc
     2041 acacccgcga tcgcgcccgc acccgcgtag gtgagactcg actgcaacat gtagagacaa
     2101 gccatgcaga aaagaatcgg cgtgagcgga tagagcggca cactgaacgg gcgctctttc
     2161 tcgggttcct tcgtgcggag aacgattagc gagagtcccg cgaggaagaa gaagagccag
     2221 aagaccggcg cgctgtattc caccatcgcc gtgaatccct cgcgcgcaaa cgatcctgca
     2281 aacaccagtg cgagcgagat cacgccctgc accagcagcg cgttcgacgg cgtttgcgct
     2341 cgctcgtgcc agcgcccgag ataatcaaac agccggaagt ctctgccaag cgcgtagttg
     2401 gttcgtgcgc cagtgatgat tgtggcattc gcggacgtca acgccgacac cgcaatgagc
     2461 acgctgacga aacgtgctcc gccttcgccc gtcgcgcgcc gcatcaggtc ggctgccgcg
     2521 gcgtccgacg cagcgagtcc ttcaagaccg aggccgcgga gaaaggccca gttaaccagc
     2581 aagtaaagcg ccgtgatcag cgcgatgctg atgagcagcg ctcgcgcgat gttgcgccgc
     2641 ggattcctca cttccgccga cacgtaaacg gcttcgttcc atccaccgta cgtcagcagc
     2701 acaaacacga gcgcgagacc gagagaggct tgcggcgcag tctgtgcggg cgccgctgct
     2761 gcaacaggtt cgccccaagt cgcaaccgcg aatccggcaa tgatgacgag aatcaggctg
     2821 agcacttcga cagccgtcag ccaattctgt gcgcccgatc cctgccgcac acccgccacg
     2881 ttcaaagcag tcaatgcgac aacaactatc gccgcataaa ccgaagatga atatgtgccg
     2941 agactgaaga gttgcgaagc gtaatcgccg acgacaaatg cgagcagtgc gacggacccg
     3001 gtttggacca cggtgatgcg cgaccacgcg taaagaaatg cgagcggcct gccgtaagcg
     3061 cgcgtgaggt agtggtagtc tccgcctgtg tgcggatacg tggtggcgag ctcggcgtaa
     3121 cacaacgcac cggctaaagt caccagcccg cccgcgagcc agatgagcaa cgcaacgctc
     3181 tcgctcgagg cgttagcagc cactagcgac ggcgtgcgaa agatgcccgc gccgacaacg
     3241 atcccgacag tgatcgcgat cgcgtccttg agtgtgagtg tcgggacagg cgcgccccgc
     3301 ccgccggctt tcacccttat ccgatcgatc attttccctc cggcacgcaa ctaagcgcga
     3361 gactatggcg ttgccgttgg ggctggttgc gcagtctttg ccgggatggt ccagagcatg
     3421 agcctctgtc cgcctggctg cactgtcacg gtcttttgcg gtgtccagtc gcccatgtcg
     3481 atggcgtgcg agaccacgcg tgttcctggc cggagttcgc ttaacagttt tggccgcagt
     3541 ctgagattaa cttcaggcaa gaggtataac gtgacgaccg tcgcatcctt caagtctgtt
     3601 tggaagagat cttgcgcggc gaactgaacg cgatcggtca cgcccgctgt tttcgcgttg
     3661 acgttactct ccgcaactcg gtccggatcg atatcaactc cgaaaccgcg cctcgcgccg
     3721 aactttttca cggccgtgat cacgagccgc ccatcgccgg atcccaggtc gtagacgacg
     3781 tcgtccttcg tcacattcgc cagcttcagc atttcgtcga cgacattctg cggtgtcggc
     3841 acgtacggaa cgtccttttt gacctgcgtg ggctgtttag tgatttcagg cgactgttgg
     3901 ctggttgccg gagggatctg ttgtttcacc tcgccctgct gtgctgctgc acacgcagcc
     3961 acgacggctc caaaaacggt gactatcacg acgcacagcc acggtaacgt tgctttccgc
     4021 attctcatct ctcctttcag actttacgca cggaaagagc cctcgtgtag cgttggccgc
     4081 gcagacttcc acgttcttgc tgtcgagaca cagggatcta acgtgaacag atgttagctg
     4141 tggtaagtac acgcgttgtg tgcgcttaag cacaaagaac ggctgctttt tcttttcttt
     4201 ttgtcgcgag aagttcgcgc gcaacaggtg agtgacaact tggagaaagt taggagagcg
     4261 gtttttcacg cacagcatcg aaagtttccc
//
LOCUS       DASWTX010001016         3049 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_185522, whole genome shotgun sequence.
ACCESSION   DASWTX010001016 DASWTX010000000
VERSION     DASWTX010001016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3049
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185522"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            52..1878
                     /locus_tag="VGD38_15505"
     CDS             52..1878
                     /locus_tag="VGD38_15505"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HEY0729486.1"
                     /translation="MLEKLGRIRLLYIVLGVLLLVGLAPLAFAGLILSGRSADELRSI
                     EGRDQAQLVQDKARQIELYGQRYRDVVTGLARAFEIAGGIQAFDDSGYDQRLQKTLQE
                     DPNLIALALWPVDGTLHRAFQPDVIKLEEVDARVSEVLARMNGRGLVVSRPQIIRSGQ
                     EMALTIAEPVLGGNNNQDVVAAVVAIVSFQEVFDAVQQPTSKSERELLDAGLPVVFVV
                     DQNGRAVAHPEASVAFSEKPMTDLKVVQEWLESGDQVQSALAPFSATRDGKSVEMLGS
                     YATAELDKSSHLGVIAIQDEAAALASVSDMRWQVLWISLVAGLITIIIGIFFANKLTH
                     PVRELASGAHRIASGDFSKRITVTSRTEIGDLGNSFNLMTDQIEHFISDLQRSSEENR
                     QLFIGTVKALAAAIDGKDPYTRGHSERVSRFSMAIAQRLALPDDEIEKIRISALLHDV
                     GKIAIDDKILKKPAALTDEEYEIMKGHPQKGFKIMSQIPAMKEFLPGMYMHHEMVNGM
                     GYPQGLKGDEIPLMGKIVAVADTFDAMTTDRPYQKAMKFEDALARIESFVGTRYDPAV
                     VAALSEACREGQIRPGVVKLKKPQQSAQPKPPSDNPQLAQVT"
     gene            1919..>3049
                     /gene="ftsY"
                     /locus_tag="VGD38_15510"
     CDS             1919..>3049
                     /gene="ftsY"
                     /locus_tag="VGD38_15510"
                     /inference="COORDINATES: protein motif:HMM:TIGR00064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEY0729487.1"
                     /translation="MGLFWRRKKEDQFVSLRLNEPAVKEVREETPAAAPPQPQPQPPK
                     PVDTPAPELPASVAAPPKPPEPKPVPEPPKPAPEPPAREAAQRPVPSRSTFSSSILGL
                     DRSIEELQAQEAALEQEFSARFRRAVAATRESLSEKLDTVFAGRKQIDEELLDQLEEV
                     LIAADIGVPTTLHILETVRRGIARKQINDLEALKQAIKDELLKILQASEREGVASETS
                     VPETVAPYVMMIVGVNGVGKTTTIGKLAQRIKAEGNDVLICAADTFRAAASDQLAIWA
                     DRTGVPLIQQKQGTDPAAVLFDSLKAAKARGSDVLIVDTAGRLHTKSNLMAELEKMKR
                     VAGREVEGAPHETLLVVDAVTGQNGLEQARQFLKVAGVTGIVL"
BASE COUNT          672 a          955 c          883 g          539 t
ORIGIN      
        1 gccttcccag aacccgaaga cctgccgcga ttgtaccgcc taagttaacg aatgctcgaa
       61 aaactcggac gaatccgtct cctctacatc gtgctgggtg tattgctcct ggtcggcctg
      121 gcgccgctcg ctttcgcggg cctcattctg tccggacgca gcgctgacga gctccggtca
      181 atcgaaggcc gcgaccaggc gcagctcgtg caggacaaag cccgccagat cgagctttac
      241 ggccagcgtt atcgcgacgt cgttaccggt ctcgcgcgcg cgttcgagat cgccggcggg
      301 atccaggctt tcgacgacag cggctacgac cagcgcctgc aaaagacact tcaggaagac
      361 ccgaatctca tcgccctcgc gctctggccg gtagacggca cactccatcg cgcctttcag
      421 cccgacgtga tcaagctcga agaggtcgac gcccgcgtca gcgaggtgtt ggcacgcatg
      481 aacggccgcg gtcttgttgt cagccgcccg caaatcatcc gttcgggaca ggaaatggcc
      541 ctgacaatcg ccgagcccgt gctcggcggt aacaacaatc aggacgtcgt ggccgccgtc
      601 gtggccatcg tgtcgtttca ggaagtgttc gacgccgtcc agcaaccgac ttcaaaaagc
      661 gaacgcgaac tgctcgacgc cgggctgccg gttgttttcg ttgtcgatca aaacggccgc
      721 gcggtcgcgc accctgaagc gagcgtagcg ttttctgaaa aaccgatgac ggacctgaaa
      781 gtggtccagg agtggctcga gtcaggcgat caggtccaat cggccctcgc accgttctcc
      841 gccacacgcg acggcaagtc agtcgaaatg ctgggttcgt acgcgacagc ggaactcgac
      901 aagagctcgc atctcggcgt gatcgccatt caggacgaag cagccgcgct cgcatccgtt
      961 tccgacatgc gctggcaagt gctgtggatc agtctcgtag ccggactgat cacgatcatc
     1021 atcggtattt ttttcgccaa taaactcacg catccggtac gcgagctcgc aagcggtgct
     1081 catcgcatcg cttccggcga cttttcgaaa cgcatcaccg tcaccagccg cacagagatc
     1141 ggcgacctcg gcaactcgtt caacctgatg acggatcaga tcgagcactt catcagcgat
     1201 ctgcaacgtt cgtctgaaga aaaccgccag ctctttatcg gcacggtcaa agcactcgcc
     1261 gcggcgatcg acggcaaaga cccgtacaca cgcggtcact ccgaacgcgt ctcgcgcttc
     1321 tcgatggcca tcgcgcaacg cctcgctttg cctgacgacg agatcgaaaa gatccgtatc
     1381 agcgcgctgc tgcacgacgt cggcaagatc gccatcgacg acaagattct caagaagcct
     1441 gcggcgctga ccgacgaaga gtatgaaatc atgaagggcc acccgcagaa gggcttcaag
     1501 atcatgtcgc agattccggc gatgaaggaa tttctgccgg gaatgtacat gcaccacgag
     1561 atggtcaacg gcatgggcta cccgcagggc ctgaagggcg atgagattcc gttgatgggc
     1621 aagatcgtcg cggtcgcgga cacgttcgac gcgatgacca cggaccgccc gtatcagaaa
     1681 gcgatgaagt tcgaagacgc actcgcccgc atcgagagtt ttgtcggcac gcgttacgat
     1741 ccggccgtcg tcgccgcact ctccgaagcc tgccgcgaag gccaaatccg ccccggcgtc
     1801 gtgaaactga agaaaccaca acaaagtgcg cagccgaagc ctccgtcaga caatccgcag
     1861 ctcgcccagg tgacctgaat ttgaatctgt gtagtctgtc gctataatcg acggcttcat
     1921 gggacttttt tggcgccgaa agaaagaaga tcagtttgtc tcactgcgtt tgaacgaacc
     1981 agcggtgaag gaggtcaggg aggaaactcc cgcagccgca ccaccgcagc cgcaaccgca
     2041 gccaccaaaa ccggtcgaca cgccggcgcc tgagctgccg gcatcagttg ccgctccgcc
     2101 gaaaccaccg gaaccaaaac ccgtacccga accgccgaag ccagcgcccg aaccgccggc
     2161 cagggaagcg gcccaacggc ctgttccgtc gcgctcgacg ttttcgtcgt caattctcgg
     2221 tctcgaccgt tcgattgaag agctacaggc gcaggaggcc gcgctcgaac aggagttttc
     2281 cgcgcgtttc cgccgcgccg ttgccgcgac gcgcgaatcg ctgtcggaaa aactcgacac
     2341 agtcttcgcc ggtcgcaagc agatcgacga ggagttgctc gatcaactcg aagaggttct
     2401 gatcgccgcc gacatcggcg tgccgacaac gctccatatt ctcgaaacag tccgccgcgg
     2461 tatcgcgcgc aaacagatca acgatctcga agcactgaaa caagccatca aggacgagct
     2521 gctgaagatc ctccaggctt cggaacgcga aggcgttgcg tcagaaacga gcgtgccgga
     2581 aaccgtcgcg ccttacgtga tgatgatcgt cggcgtgaac ggcgtcggca agaccacgac
     2641 gatcggcaag ctcgcccaac gcatcaaggc tgaaggcaac gacgttctga tctgcgcggc
     2701 cgacacgttt cgcgccgcgg catcggacca gctcgcgatt tgggccgatc gcaccggcgt
     2761 tccattgatc caacagaagc agggaaccga tccagccgcc gtgttgtttg attcgttgaa
     2821 agcggcgaag gcgcgcggtt ctgacgtgtt gattgtcgac accgccggac gcctgcacac
     2881 gaagtcgaac ttgatggccg agttggaaaa gatgaaacgc gttgcgggcc gcgaagtcga
     2941 aggcgcgccg cacgaaacgc ttttagtggt tgatgcagtc acgggccaga acggtctcga
     3001 acaagcgcga cagtttttga aagtcgctgg cgtgaccggc atcgtactg
//
LOCUS       DASWTX010001017         1809 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_168988, whole genome shotgun sequence.
ACCESSION   DASWTX010001017 DASWTX010000000
VERSION     DASWTX010001017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1809)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1809)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1809
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168988"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..199)
                     /locus_tag="VGD38_15515"
     CDS             complement(<1..199)
                     /locus_tag="VGD38_15515"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: protein motif:HMM:NF013007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEY0729488.1"
                     /translation="MGILNVTPDSFSDGGQFLDIDQALAHAESMISEGADIIDVGGES
                     TRPGGEPVSIDAEIKRVVPVIE"
     gene            complement(307..>1809)
                     /gene="ftsH"
                     /locus_tag="VGD38_15520"
     CDS             complement(307..>1809)
                     /gene="ftsH"
                     /locus_tag="VGD38_15520"
                     /inference="COORDINATES: protein motif:HMM:TIGR01241.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEY0729489.1"
                     /translation="KSRAKLLNNQQKRVTFKDVAGVEEAKEELQEIIEFLKEPQKFQK
                     LGGRIPKGVLMMGPPGTGKTLLARAIAGEANVPFFSISGSDFVEMFVGVGASRVRDLF
                     EQGKKNAPCIIFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFESNDGVILIA
                     STNRPDVLDPALLRPGRFDRRVVVSRPDVRGREGILKVHTRKIPLGEDVDISVIARGT
                     PGFTGADLANLVNEAALNAARYNKKLVAMGDFELAKDKVLMGAERKSMVISNEEKRVT
                     AYHEAGHTLVGLKVPNADPVHKVTIIPRGMALGVTQQLPEGDRHNYSQEYLLGQIAIL
                     MGGRIAEETFLGSITTGASNDIERATELARAMVCEYGMSEMGPITFGKKEEQIFLGRE
                     IAQHRDFSEDTAIKIDEQVKKIVTAQFERAKAIIEENRDTMIRLAECLLERESLDGVE
                     IRRIVAGLPLDENPSVDSGDGEDRPQLKEPAQKPLKPILPPITGGNPQPA"
BASE COUNT          357 a          549 c          486 g          417 t
ORIGIN      
        1 cttcgatcac ggggacgacg cgtttgatct ctgcgtcgat cgaaaccggc tcaccgcccg
       61 gccgtgtaga ctcaccgcct acgtcgatga tgtcagcgcc ttccgagatc atgctctcgg
      121 catgagccag ggcttgatcg atatccagaa attgtccgcc gtcgctgaag ctatcagggg
      181 tgacattaag aatgcccatg atgagcgttc actcaccgat gggcattact cgatctctta
      241 tttgccagga agtcattttc cacagattac acagattaag tgaatctgtg taacctgtgg
      301 atggttttag gcaggttgcg gattgccgcc ggttattggt ggcagaatcg gcttgagcgg
      361 cttctgggcc ggctccttca actgcggccg atcctcgccg tcaccggaat cgactgacgg
      421 attttcatcg agcggcaagc ccgccacgat ccgtcgaatc tcaacgccgt ccaacgactc
      481 acgctccagc aggcattcag ccagacgaat catcgtgtcg cgattctctt cgatgatcgc
      541 cttggcccgt tcaaactggg cggtgacgat cttcttcacc tgctcgtcga tcttgatggc
      601 agtgtcttcg gagaagtcgc gatgctgggc gatctcacgt ccgaggaaga tctgctcttc
      661 cttcttgcca aacgtgattg gtcccatctc ggacatgccg tactcacaga ccatcgcacg
      721 tgcgagctcg gtcgcgcgtt cgatgtcgtt cgatgcgccg gtcgtgatgc tgccgaggaa
      781 cgtctcttca gcgatgcgtc cgcccatcag aatcgcgatc tggcccaaca ggtattcctg
      841 gctgtagttg tgacgatcgc cttcgggaag ctgttgcgtt acgccgagag ccatgccgcg
      901 cggaatgatc gtgaccttgt gcacgggatc ggcgttcggc actttcaaac caaccagcgt
      961 gtgacccgct tcgtggtacg cagtgacgcg cttctcctcg ttcgaaatca ccatgctctt
     1021 gcgctcggcg cccatcagca ccttgtcctt ggcaagttcg aagtcgccca tcgcgacgag
     1081 cttcttgttg taacgcgctg cattcaacgc ggcctcgttc acgaggtttg cgaggtcagc
     1141 gccggtaaag cccggtgtgc cgcgagcgat caccgagatg tcaacatctt cacccagcgg
     1201 aatcttccga gtgtgaactt tcaaaatgcc ttcgcggcca cgaacgtcag gtctggatac
     1261 gacgacccgc ctgtcaaatc gtccaggtcg cagcaacgcc ggatcgagaa cgtccggacg
     1321 gttggtcgac gcgatcagga tcacgccgtc gttcgattca aagccgtcca tctcgaccag
     1381 caactggttc aaagtctgtt cgcgttcgtc gtgtccaccg cccaggccgg cgccacgatg
     1441 acgaccaacg gcatcgattt cgtcgatgaa gatgatgcac ggcgcattct tcttgccctg
     1501 ctcaaacagg tcgcgcacac gcgaagcgcc gacgcccaca aacatctcaa cgaaatccga
     1561 accggaaatc gagaagaacg gaacgtttgc ttcacccgcg atcgcgcggg ccagcaacgt
     1621 tttgccggtt cccggcgggc ccatcatcaa aacgcccttg ggaatgcggc caccgagttt
     1681 ctgaaacttc tgcggctcct taaggaattc gataatttcc tggagttctt ccttggcttc
     1741 ttcaacaccc gcgacgtctt taaatgtgac gcgtttctgc tggttattga gcaacttggc
     1801 ccgcgactt
//
LOCUS       DASWTX010001018         3873 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_169004, whole genome shotgun sequence.
ACCESSION   DASWTX010001018 DASWTX010000000
VERSION     DASWTX010001018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3873
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169004"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            76..1788
                     /locus_tag="VGD38_15525"
     CDS             76..1788
                     /locus_tag="VGD38_15525"
                     /inference="COORDINATES: protein motif:HMM:TIGR03663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flippase activity-associated protein Agl23"
                     /protein_id="HEY0729490.1"
                     /translation="MANTASTKSTRSKKAHARHAAAAAKNAPHVEAPAPSSDLPERVW
                     LIGVVMIFVIAAALRMYDLNLVPLHHDEGVNGNFLMRLVREGAYTYDPENYHGPTLYY
                     FAAFWPWVMRALFGKASMENYGLTTVAIRMVPVLFGLGTIGLIFTLRRWLGTIATLTA
                     ALLLAISPGAVYLSRYFIHETQFVFFTFAIVVSCLYLYEHRNPFCLIPAAASGALLFA
                     TKETAFISVGVLIIALAVTFVYLRLVRGKVRPPKAKGRPQPEVWSLGDFVNELGGPVM
                     VSLCAVLAAITFAGLYYLFYTSFTLNPKGLSDSFQTFAVWKKTSSVAHVHPIYTYIRW
                     LLQREGALLVLGAFGALFVVLKPTNAFALFAALWAFGLTAAYSLIGYKTPWLMLNFVV
                     PLALIAGYAVQAIFELEARQWRVTGVVLIVALSFTAYQSIDLNFINYDNDDTRYVYVY
                     AHTKRGMLDLVKEVDRIGKERTGGQTGITIVSPDYWPLPWYLRNYSRVGYYGRMAPST
                     EPMIIANSTQQPEVEANFRDMYQQVRSKEGDGAFELRPGVRLLLYERRKDLFPTEAPP
                     SIKR"
     gene            1851..2093
                     /locus_tag="VGD38_15530"
     CDS             1851..2093
                     /locus_tag="VGD38_15530"
                     /inference="COORDINATES: protein motif:HMM:NF014516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY0729491.1"
                     /translation="MFKLQRLEITGFKSFADYTEIIFTGDGITAIVGPNGCGKSNVAD
                     AIAWVLGEQRVKHLRGGEMKDVIFQGARNRPPSGMA"
     gene            2100..>3873
                     /locus_tag="VGD38_15535"
     CDS             2100..>3873
                     /locus_tag="VGD38_15535"
                     /inference="COORDINATES: protein motif:HMM:NF018208.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729492.1"
                     /translation="MHLVRDEVDEVEPDIEDIDSTLEKIDDRLVTIQIEATENTENTE
                     VTESNPPDPVQKTPQKRHWRRRNLALEFAPGEAVSVTRRLYRSGESEYLLNDKICRLR
                     DIQDLFSGTGLAGGHYAIIEQGRIGQILSAKPMDRRTIIEEAAGITKFRVRQRATEAR
                     LENARSNLSRISDIVAEIDRQVNSLRRQAAKARRYGVLREELRELLRHVYVAEDRKLA
                     TVLEETHTKLSEITELELRISEDLSQREEAARTATQQARAFEDELSTVRAAAAEAVLQ
                     RDRQARECVYQQDQLAEIEKRKGEVTAEIEALTARLVLIEAECHRLQHEDARLREEAD
                     RSALQLRTVEETYAERLAAATAAETEIESARGELLSQTAIAERLHEIARQLETTLERL
                     SQQAEGLAREGDRAASQHAERKLEAERFAHELADARARVARLQAERESAVDAVVRGHE
                     AVSDTEAELTRVRDEYSRASHRLESLKELDQRRAYYSPAVQLVFAPSETPRDFHFIGT
                     LADALNVDAKWERAVEGVLGSSLQSIVVPTPADAVRGAQWLRENNGGRASFLVAGLHG
                     GSEEADTETITTLACRLEERPALSP"
BASE COUNT          812 a         1124 c         1158 g          779 t
ORIGIN      
        1 ttggaccaca ggaacgcatg gtgatccagg cgatcaacga gcggttcttt agtcagttcg
       61 agaaggtcgg acaagttggc gaatacagcc tctacaaaat caacccgcag taagaaggcg
      121 cacgctcgtc acgccgctgc cgctgcaaag aatgcgccgc acgtggaagc gccggcgcct
      181 tcgtcagact tgcccgaacg cgtgtggttg atcggcgtgg tgatgatctt tgtgatcgct
      241 gcagcgctgc gcatgtacga tctgaatctc gttccgctgc atcacgacga aggcgtcaac
      301 ggcaactttc tcatgcggct cgtgcgtgaa ggcgcctata cctacgaccc ggaaaactat
      361 cacggtccga ctctctatta cttcgccgcg ttctggccgt gggtcatgcg tgctttgttc
      421 ggcaaggcgt cgatggagaa ttacggactc accacagtcg ctatccggat ggtgccggtt
      481 ctctttggtc tcgggacgat cggtttgatc ttcacgttgc gccgttggct cggcacgatt
      541 gcgacgttaa cggccgcgtt gctgctcgcg atctctccgg gcgcggttta cctgtcgcgc
      601 tacttcatcc acgagacgca gtttgttttc tttacgttcg cgattgttgt gtcgtgtctt
      661 tatttatacg aacaccgaaa cccgttctgc ttgatacccg cggcggcttc cggagcgctg
      721 ctgttcgcga cgaaagaaac cgcgttcatc tccgtcggcg tgctgatcat tgctttggcg
      781 gtgacgtttg tttatttgcg tctggttcgc ggaaaggtga ggccgccgaa agctaaaggc
      841 cggccgcagc cggaagtgtg gtcgttgggc gacttcgtca atgagcttgg cggaccggtg
      901 atggttagtt tgtgcgccgt gctggccgcg atcacctttg cgggcttgta ctaccttttc
      961 tacacgtcgt tcacgctgaa tccaaaagga ctttccgatt ctttccagac gtttgctgtg
     1021 tggaaaaaga cgtcgagcgt agctcacgtc catccgattt acacttacat ccgctggttg
     1081 ttgcaacgcg aaggcgcgct gctggttttg ggtgctttcg gcgcgctctt tgtggtgctg
     1141 aagccaacaa acgcgttcgc gctttttgcc gctctctggg cgtttgggtt gaccgcagct
     1201 tactcgctca tcggctacaa gacaccgtgg ctgatgctga acttcgtcgt gccgctcgcg
     1261 ctcatcgctg gctacgcggt gcaggcaatc tttgagttag aggcacggca atggcgcgtg
     1321 acgggagtgg ttctgatcgt agcgctgtcg ttcacggcgt atcagagcat cgatctgaac
     1381 ttcatcaact acgacaacga cgacaccagg tacgtctacg tttatgctca cacgaaacgt
     1441 ggcatgctcg acctcgttaa agaggtcgac cggatcggaa aagaacgaac cggcggccaa
     1501 accggcatca cgatagtcag tcctgattac tggccgttgc cctggtacct gcgcaactac
     1561 agtcgcgtcg gctactacgg ccggatggca ccctcaaccg agccgatgat catcgccaac
     1621 tcaacccagc aacccgaggt cgaggcaaac ttccgcgaca tgtaccagca ggtccggtcc
     1681 aaggagggtg acggcgcatt tgagttgcgg ccgggggtga gactgctgtt gtacgagcgc
     1741 cggaaggacc tcttcccgac cgaggcgccg ccgtcgatca aaagatagcc agagcacttc
     1801 acgttgtggt tgacattcta agcgtgtgca acttatagtg ccccaactgc atgttcaaac
     1861 tccaacgcct ggaaatcact ggctttaaat ccttcgccga ctacaccgaa ataatcttca
     1921 ccggagatgg aatcaccgcc atcgttgggc caaacggctg cggcaagagc aacgtagccg
     1981 acgcgatcgc ctgggtgttg ggcgagcaac gcgttaagca cctgcgcggc ggtgagatga
     2041 aggacgtcat ctttcagggc gcgcgcaatc gtccgccgag cggcatggcc taagttgtga
     2101 tgcatctcgt gcgtgatgaa gtcgacgaag tcgagccgga cattgaagac atcgattcga
     2161 cgttggagaa gatcgacgat cggctcgtga cgatccaaat cgaagccaca gagaacacag
     2221 agaacacgga agtcacagaa tccaatccgc cagatcctgt tcaaaaaacg ccacaaaagc
     2281 gccactggcg acgacggaac ctcgctctcg agtttgctcc cggcgaagct gtttccgtaa
     2341 cgcgccgtct ctacaggtca ggcgagagcg agtatctgct caacgacaag atctgccgcc
     2401 tgcgcgatat tcaggatctg ttctctggca ccggtctcgc cggcggccac tacgccatca
     2461 tcgaacaggg ccgtatcgga cagattcttt ccgcgaagcc gatggaccgc cgcacgatca
     2521 tcgaagaagc tgcgggcatc acgaagtttc gcgtgcgcca acgcgctacc gaagcgcggc
     2581 tcgaaaacgc gcgctcgaat ctctcgcgta tttccgacat cgttgcggag atcgatcgcc
     2641 aagtaaacag cctgcgccgc caggcagcga aagcgcgtcg ttacggcgtg ctgcgcgaag
     2701 agttgcgcga actgctgcgt catgtttacg tcgccgaaga tcgcaagctc gccaccgtcc
     2761 tcgaagagac acacacgaag ctcagcgaaa ttacggagct cgaacttcgc atcagcgaag
     2821 atctgagcca gcgcgaagaa gccgcacgca ccgcaaccca gcaggcgcgc gcgtttgaag
     2881 acgagttgtc gacggtgagg gccgcggctg cggaagccgt gctgcaacgc gatcgacaag
     2941 cccgcgagtg cgtttaccag caggaccagt tagcggagat cgaaaaacgc aaaggcgagg
     3001 tcaccgcgga gatcgaggcg ctgacggcgc ggctcgtact aatcgaagct gagtgtcacc
     3061 ggctgcaaca cgaagatgcg cgtctgcgcg aagaggcaga tcggagcgct ttgcagttgc
     3121 gcacggtgga agagacgtac gccgagagac tcgcggcagc gacggcagcg gaaaccgaaa
     3181 ttgagagcgc tcgtggtgaa ctgctttcgc aaaccgcgat cgccgaacgt ttgcacgaga
     3241 tcgcgcgtca gcttgaaacc acgctcgaac gtctttcgca acaggctgaa ggtctggcgc
     3301 gtgaaggcga tcgcgcggcg agccagcacg cggaacgaaa actcgaagcc gagaggtttg
     3361 ctcacgaact cgccgacgcg cgagcacgcg tggcgcgtct ccaggccgaa cgcgaatcgg
     3421 cggtcgatgc cgtcgttcgt ggtcacgaag ccgtcagcga cacggaagct gaactgacgc
     3481 gcgtccgcga cgagtattct cgcgcgagtc atcgtcttga aagtctgaaa gagctcgacc
     3541 aacggcgcgc gtattactcg cccgccgttc agctcgtctt tgctcccagc gaaacaccgc
     3601 gtgacttcca tttcatcggc acgctcgccg atgctttgaa cgtcgacgcg aagtgggaac
     3661 gcgcggttga aggcgtgctc ggttcgtcgt tgcagtcgat cgtggtgccg acgcccgccg
     3721 acgcggttcg cggcgctcaa tggctgcgtg aaaacaatgg cggacgcgcg agttttctcg
     3781 tcgccggtct gcacggcggc agtgaggaag ccgacacaga gacgatcacg acgctcgcgt
     3841 gccgtctcga agaacgtccg gcgctatcac ccg
//
LOCUS       DASWTX010001019         2651 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_344798, whole genome shotgun sequence.
ACCESSION   DASWTX010001019 DASWTX010000000
VERSION     DASWTX010001019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2651
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344798"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..680)
                     /locus_tag="VGD38_15540"
     CDS             complement(<1..680)
                     /locus_tag="VGD38_15540"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0729493.1"
                     /translation="MVVLLLACLQASVLAQQAARATLTGIVTDPHGAAVPGAKITATL
                     ESAGVRRETMSNNEGLYVFTDLVPGEYELRVEAQGFLTKVSKVPVSLKVGQSVTLNVP
                     LEIGVSETQVIELIHDRSLIDNTASLVQGVIESREVETLPLNGRNFLELALLIPGNAP
                     APNFDPTKTNTFVISSAGQLGRGGNVTIDGVDTNDDVVGGPIQNISQDAIAEFQMATN
                     RFSARLGRS"
     gene            complement(737..2095)
                     /gene="glmM"
                     /locus_tag="VGD38_15545"
     CDS             complement(737..2095)
                     /gene="glmM"
                     /locus_tag="VGD38_15545"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR03990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEY0729494.1"
                     /translation="MPAIPTLKISISGVRGVIGQSLTPTLLTRFAQAFGTHTGSGTIV
                     VGRDPRTSGEMVNHAVIAGILSSGGRVVDIGVCPVPTVQLQVRRRKANGGIAITASHN
                     PAEWNALKFIGSNGLFLDAGQARELLDIYHQGEYTKVGSEEIRTVEEVEGATEAHIKA
                     ILDALGPLPSQGKRLRVVLDSCNGAGSIVGPKLLEALGAEVIPINVTPDGSFPRPAEP
                     LPENLGDLCDAVKKHGADVGFAQDMDADRLAIVNEHGIPIGEDYTLVLAALYVLGREP
                     GPVVANLSTTSALDDVAKKFNCPLFLTKIGEVNVTDKMQQQHAVIGGEGNGGVIYPRI
                     NFARDSLVGMALVLHLLAESGKTVSQLMDQFPRYTVVKEKMVCPSEKIPAVLRMLRQE
                     YGEFPLDTRDGVKVTLPEGWFLVRGSNTEPIIRIVAESRSDSQAREIVTRIYDRVASC
                     IR"
     gene            complement(2097..>2651)
                     /locus_tag="VGD38_15550"
     CDS             complement(2097..>2651)
                     /locus_tag="VGD38_15550"
                     /inference="COORDINATES: protein motif:HMM:NF014879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729495.1"
                     /translation="ADIRLRKQPGTIVTNVSTTQAIEAIASQHGGNVVRTPVGQAYIS
                     EGLIEHNGVLGGEGSGGITVPEVHLTHDSAAAIGLILEHLAQTGERISDLVQQLPRLA
                     TLKHDVAVEPHRLYSVLQEFRAVVEQEGLTFDATDGLKVTLPDGWSHVRASNTESIIR
                     IIVEAKEKTKAAELLDWTRDRIRK"
BASE COUNT          506 a          794 c          760 g          591 t
ORIGIN      
        1 gagcgaccga gtcgcgcgga aaagcgattg gtcgccattt gaaactcggc gatcgcgtcc
       61 tgcgagatat tctgtattgg accaccaacc acatcgtcgt tggtatcgac gccgtcgatg
      121 gtgacgttgc cgccgcgtcc aagctgtccg gctgaagaga tgacgaaggt gttcgttttg
      181 gtcggatcga aattcggcgc gggtgcattg cctgggatca gcaacgcaag ctcgagaaag
      241 ttacggccgt tgagcggcaa ggtctcaact tcgcgcgatt cgataacgcc ctggaccagt
      301 gaagcggtgt tgtcgatcag cgagcggtcg tggatgagct ctataacctg cgtctcgctc
      361 accccgatct ccagcggtac attgagcgtc accgactgtc cgactttcag tgagaccggc
      421 actttcgaaa ctttagttaa gaacccctgc gcctccacgc gcaactcata ctcgccgggc
      481 accagatcgg tgaagacata aagcccttcg ttgttgctca tcgtctcgcg ccgcacgccg
      541 gccgattcga gcgttgccgt gatcttcgcg cccggcactg ccgcgccgtg cggatcggtc
      601 actattccgg tcagtgtggc tcttgctgcc tgctgggcca gaacagaagc ttgcaaacaa
      661 gcaagaagca agacgaccac cgggagggaa cgagataatg caggggtcat tattgattcc
      721 tttcagggtt tttgggctaa cggatgcagc ttgccacccg gtcgtagatc cgggtcacga
      781 tctcgcgtgc ctgactgtcg cttctggact cagcgacgat gcgaatgatc ggctcggtgt
      841 ttgaaccacg caccaaaaac catccttcag gcaacgtgac tttcacgccg tcgcgcgtgt
      901 cgagcggaaa ctcgccgtac tcctggcgca acattctcag caccgcgggg attttctcgg
      961 acggacaaac catcttttct ttgacgaccg tgtagcgtgg gaattgatcc atcagttgcg
     1021 acacggtctt gccggattcg gcgagcaggt gcagcacgag ggccatgccg accagactgt
     1081 cgcgcgcgaa gttgatgcgc ggatagatca cgccgccgtt tccttcgccg ccgatcacgg
     1141 cgtgctgctg ttgcatcttg tcggtgacgt tcacttcgcc gatcttcgtc agaaacagcg
     1201 ggcagttgaa cttctttgcg acgtcgtcga gcgcagaagt tgtcgaaagg tttgcgacga
     1261 cgggaccggg ttcgcgtccg agcacgtaaa gcgcggctaa aactaaggtg taatcttcgc
     1321 ctatcggaat cccgtgttcg ttcacgatcg cgaggcgatc cgcatccatg tcctgcgcga
     1381 aaccgacgtc cgcgccgtgt ttcttcactg cgtcgcacag atcgccgagg ttttcgggca
     1441 gtggttcggc gggacgcgga aacgatccgt caggcgtgac gttgatcgga atcacttcag
     1501 cgccgagcgc ttcgagaagt tttggtccaa cgatcgaacc cgcgccgttg cacgagtcga
     1561 gcacaacgcg gaggcgtttt ccttgcgacg gcagtgggcc aagtgcatcg agtatcgctt
     1621 tgatgtgggc ctcggttgcg ccttcaactt cttctaccgt tctgatctct tcactgccga
     1681 ctttcgtgta ctcgccctgg tgatagatat cgagcagttc gcgcgcctgg ccggcgtcga
     1741 gaaagagtcc gttcgaaccg ataaacttca gcgcgttcca ctcggccggg ttgtgactcg
     1801 ccgtgatcgc gattcccccg tttgcctttc gccgtcgcac ttgcaactgg accgtcggca
     1861 ccgggcaaac gccgatgtcg accacgcgcc cgccgctcga aagtattccg gcgatcactg
     1921 cgtgattgac catctcgccc gacgtgcgcg gatcgcgtcc gacgacgatg gttcccgaac
     1981 cggtgtgcgt gccgaacgcc tgcgcgaaac gcgtcagcag cgtcggcgtc aacgactggc
     2041 cgatgacgcc acgcacaccc gagatactga tttttaaagt tggtatggcc ggcaaattat
     2101 ttccttatgc ggtcacgagt ccaatcgagc agttccgctg ctttcgtttt ttcttttgct
     2161 tcgacgatga tgcgaatgat cgactccgtg ttcgacgcgc gcacgtgtga ccaaccatcc
     2221 ggcaaggtca ctttcaaacc gtccgtcgca tcaaacgtca gtccttcctg ttccaccacg
     2281 gcacgaaact cctgcaacac tgaatacaac cggtgcggct cgacggccac gtcgtgcttc
     2341 aacgtagcga gccgcggcag ttgttggacc agatcgctga tgcgctcacc ggtctgcgcg
     2401 agatgttcga gtatcaatcc gatcgccgcc gcactgtcgt gcgtcaggtg aacttccgga
     2461 accgtgattc cgccgctgcc ttcgccgcca agcacgccgt tgtgttcgat caaaccttca
     2521 gagatgtacg cctgcccaac tggagtgcgt acaacgttgc cgccgtgttg cgacgcgatc
     2581 gcctcgatcg cctgcgttgt ggaaacgttc gtcacgatcg tgccgggttg ttttcgtaaa
     2641 cgaatatcag c
//
LOCUS       DASWTX010001020         2243 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_122788, whole genome shotgun sequence.
ACCESSION   DASWTX010001020 DASWTX010000000
VERSION     DASWTX010001020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122788"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1032)
                     /locus_tag="VGD38_15555"
     CDS             complement(<1..1032)
                     /locus_tag="VGD38_15555"
                     /inference="COORDINATES: protein motif:HMM:NF012927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkene reductase"
                     /protein_id="HEY0729496.1"
                     /translation="MLTLFDSLRIGQIELDNRIIMAPMTRSRANDEGVQPDYAAEYYR
                     QRASAGLIITEATNVSSMAKGYVRTPGIYTPEQIESWRAVTQAVHARGGKIFMQIFHT
                     GRIALPDFLPNNTQPVAPSAVRANGKNYTDEGMKEFVTPREITKDEIAQTVQDFATAA
                     KNAIAAGFDGVELHSASGYLVQQFLTTNVNLRTDEYGGSIENRTRFVFEILDAMANAI
                     GSQRVGVKFSPQIAFNDIEELDAGEVYPYIIERLNERQLAYVQITDGTSAGWHAKLRP
                     LYKGVYFANAGFTYESGTDLLAQNGADAIAFATKFLANPDLPERFKRRAELNAPDRST
                     FYSPGEKGYT"
     gene            1146..1988
                     /locus_tag="VGD38_15560"
     CDS             1146..1988
                     /locus_tag="VGD38_15560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729497.1"
                     /translation="MCSALLVTTVSAQVVGQPYRLSDKDVERIIKRIEQQSDRFRSSL
                     DNALDRSRFNGTNREDDINSFIKDYYEQTKRLRDRFDKHNSATGDVEAVLDRAARIDD
                     FMRRNRLSSKAQDEWSRLKSNLDELASAYNVSWRWDGYTAAPGVLSPEGTTVAGVPYR
                     VSDREVERTLRAIEQQSDRFRSALDSSLDKSWLNGTSDEDDINRFVKEFYERTKTLRD
                     NFDDRKSTSADVQAVLDRAASIDAFMRRNRMRDDKATREWDRLRGNLDALAQVYNVSW
                     HWRY"
     gene            complement(2032..>2243)
                     /locus_tag="VGD38_15565"
     CDS             complement(2032..>2243)
                     /locus_tag="VGD38_15565"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HEY0729498.1"
                     /translation="NLRRAVASLGISYPVVTDNDYQSWKAYNVEAWPTVFLLDKRGRI
                     RWRHVGEGNYKEAERMIQELLAEET"
BASE COUNT          471 a          653 c          612 g          507 t
ORIGIN      
        1 ggtgtagccc ttctcgcctg gtgagtaaaa agttgatcgg tcgggtgcgt tgagctctgc
       61 gcggcgtttg aagcgctcgg gtagatcggg gttcgcgagg aacttcgtcg cgaaggcgat
      121 cgcgtcagca ccgttttgag ctaagagatc tgtgccactc tcgtacgtaa acccggcgtt
      181 tgcgaaatag acgcccttgt agagcggacg caacttcgca tgccagcctg cgcttgtgcc
      241 gtcggtgatc tgaacgtagg ccagttgccg ctcgtttaga cgctcgatga tgtacggata
      301 gacctcaccc gcatcgagct cctcgatatc gttgaaagca atctgcggcg agaacttcac
      361 cccgacacgc tgcgagccga tcgcgttcgc catcgcatcc aggatctcaa aaacgaaccg
      421 cgtgcggttc tcgatcgagc cgccgtattc atcagtacgg aggttcacat tcgtcgtgag
      481 aaactgttgg accaggtaac cgctcgccga gtgcagctcc acaccatcga accccgctgc
      541 gatcgcgttc ttcgcggccg tggcaaagtc ctgaactgtc tgcgcgatct catctttcgt
      601 gatctcacgc ggcgtgacga attctttcat cccttcatcc gtgtagttct tcccgttcgc
      661 acgcacggcg ctcggcgcaa cgggctgtgt gttgttcggc aaaaagtcag gcaacgcgat
      721 gcggccggtg tgaaagatct gcatgaagat tttgccgcca cgagcatgca ccgcttgcgt
      781 caccgcgcgc cagctttcga tctgctccgg cgtgtagatg ccgggcgtgc gcacgtagcc
      841 tttagccatc gacgaaacgt tcgtcgcttc agtgatgatc agcccggccg aggcgcgttg
      901 ccggtaatat tccgcggcgt aatcgggttg cacgccttca tcgttcgcgc ggctgcgcgt
      961 catcggcgcc atgatgatgc ggttgtccag ttcgatctgt ccgattctca gtgagtcaaa
     1021 gagcgttagc acttatcgtt tctcccgcct ataatcgatt caccccaata gccccttcat
     1081 tctaaccatc cgtttcaagg agttctatta tgttgcacag gctgtttgtt atatcagtcc
     1141 tctgtgtgtg ttccgcactc ttagttacta cggtcagcgc ccaggtcgtc ggtcaaccat
     1201 atcgattaag cgacaaagat gtcgaaagaa tcatcaagcg gatcgaacag cagtccgatc
     1261 gtttccgctc gagtctcgac aacgcgctcg atcggagccg cttcaatggc accaaccgtg
     1321 aagacgacat caactcgttc atcaaagact attacgagca gacaaaacga ttgcgcgatc
     1381 gttttgacaa acacaactca gcgaccggcg acgtcgaagc agtgctcgat cgggccgccc
     1441 gcatcgacga tttcatgcgg cgcaatcgtc tttcgtcgaa ggcccaggac gagtggtcca
     1501 ggttgaagag caatctcgac gagcttgcat cagcgtataa cgtaagctgg cgttgggacg
     1561 gctataccgc agcacccggc gtcctttctc cggaaggaac aaccgtcgcg ggcgttcctt
     1621 atcgcgtttc cgatcgcgag gtcgaaagaa cactgcgcgc gatcgagcaa cagtccgatc
     1681 gttttcgttc ggcgctcgat tcttcgctcg acaagagctg gctcaacggc accagcgacg
     1741 aagacgacat caatcgtttt gtgaaagagt tttacgaacg gaccaagacg ctgcgcgata
     1801 atttcgacga tcgcaaatct accagcgcag acgtccaagc cgttttggat cgcgctgcga
     1861 gcatcgacgc cttcatgcga cgcaaccgga tgcgcgacga caaagcgacg cgcgaatggg
     1921 atcgcctgcg cggcaatctc gacgcgctcg cgcaggttta caacgtgagc tggcactggc
     1981 ggtattgagt taaaaacgcc cgggttcgtc acggctgctc gcagtctgaa actatgtttc
     2041 ttctgcgagc agctcctgaa tcatgcgctc ggcttccttg taattgcctt cgccaacgtg
     2101 ccgccagcga atgcgtccgc gtttgtccaa caggaaaacc gtgggccacg cttcgacgtt
     2161 gtatgccttc catgattgat aatcgttatc ggtgactacc ggataactga tccccaacga
     2221 agcaaccgca cggcgaagat tgt
//
LOCUS       DASWTX010001021         5843 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_273296, whole genome shotgun sequence.
ACCESSION   DASWTX010001021 DASWTX010000000
VERSION     DASWTX010001021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5843)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5843)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5843
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273296"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..475)
                     /locus_tag="VGD38_15570"
     CDS             complement(<1..475)
                     /locus_tag="VGD38_15570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729499.1"
                     /translation="MTDTNTLAIYYEHPDWFRPLFAELDRRAVPYAKLDATRHSYDPS
                     ETDSAYTVLFNRMSPSAYLRSHGHGILYTLQYLNHLASLGTRVINGEKAFAIEISKAR
                     QLSLLESLNLPYPKARVINSPALAVEASEGLRFPNVVKANIGGSGAGIVRFDSREQ"
     gene            864..986
                     /locus_tag="VGD38_15575"
     CDS             864..986
                     /locus_tag="VGD38_15575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729500.1"
                     /translation="MRRNISMALLGLVLLFGSAASSTAQVKRVQMRIAGYLCGN"
     gene            987..2300
                     /locus_tag="VGD38_15580"
     CDS             987..2300
                     /locus_tag="VGD38_15580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729501.1"
                     /translation="MYNIQKAVSRLDFAPKLKEIEVTDFKKGLGVFTPKPDKAVSFAA
                     LKESLKKAGYTLASAEITVAGKIGRNGEGWAIVADASGQRFALEGPNVDQALAGAKDG
                     DAIELTGDWKTTGTGPKAHETITAPARKTVASRRPGSFPIFVKAGFSESSLAERGTST
                     GPAPVAPIRVTSPGLTVYKGGAITPRVYFIKQHLGTLEVHRQVLDLSVSYTPSPRLQL
                     EIEAPFSRTSYDDGTSSGSGFGIGNVTAWAKYRFFRTVETYGDRQAAFRVGLELPTGK
                     KTAPSQAQLNLPTFVRQQLTPISGGLSPHLDIAFSPAGGRFIFGGNAQAIFRTERDGF
                     RMGHEQRLSTDLEFVIPRDPHKPGGELFLILETTFVHRSNGRLDGLTVNGSGATEYYL
                     APGLQYAAHPRFVVEGSFQFPVVRNTGPLALRTDRNLLLGVRYLF"
     gene            2613..3791
                     /locus_tag="VGD38_15585"
     CDS             2613..3791
                     /locus_tag="VGD38_15585"
                     /EC_number="6.5.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF013319.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008452 - RNA ligase activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HEY0729502.1"
                     /translation="MPYEKLTIGGAHHDILSWANHEFSIEEQNMLRNVSRLPCLFKHV
                     ALMPDAHLGVGSMVGSVIATKEAVIPATVGVDIGCGMMALKTPFKSHILEGKLKDLRL
                     AIEEAVPAGFSEYSESVDESSHWEGWKDFADLHAGVRDRKAKAMKQLGTLGGGNHFIE
                     VCLDTENFVWLMLHSGSRNIGKELADRHISTAKSLWKLSELPAPDLAYFIQGTPEFAA
                     YWKDLKWAQSYAMKNREIMMTRLLKVFNKLFNHRQPFKPELQVNCHHNYVALEEHYGE
                     KVFVTRKGAINAGKDVYGIIPGSMGAKSFIVKGRGAAESFTSCSHGAGRKMSRGAAKR
                     AFTADDLARQTAGVECRKDTGVLDEIPGAYKSIEAVMKNQEDLVEVVAEIKQVVCVKG
                     "
     gene            complement(3832..4503)
                     /locus_tag="VGD38_15590"
     CDS             complement(3832..4503)
                     /locus_tag="VGD38_15590"
                     /inference="COORDINATES: protein motif:HMM:NF021576.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2306 domain-containing protein"
                     /protein_id="HEY0729503.1"
                     /translation="MKLNAKRVTFIVIALASLYVMYHNERFLIDSEHPAWQRYEAFKW
                     WLLPHGIFGAIVLLFAPFQFSERMRQRFTKAHRVMGRFYVVGALALAPMGAYIQYYQE
                     RMGGPRSFTILGVVDATMLMSATLLAFLFAVRRKIALHRQWATRSYAIALVFIAARFV
                     MGITGWEQLGVEIVQAIIWSCLALSMVFADISIHWREIRAALSFRTKPVPAKQPVVNP
                     AARAA"
     gene            complement(4575..>5843)
                     /locus_tag="VGD38_15595"
     CDS             complement(4575..>5843)
                     /locus_tag="VGD38_15595"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEY0729504.1"
                     /translation="NARCMSQASELLEQVFREEYGRIIATLIRQSGSFDLAEEALNEA
                     FLSAAASWERDGPPRNPGAWLTTVAHRRLLDAIRRDKTRTDKQPEVAYETTRLQPYAD
                     PASIEEAVEYPDDRLRLIFTCCHPSLSRDAQVALTLRTLGGLTTTEIAHAFLLPEPTL
                     AQRLVRAKQKIRVAGIPYEIPSVERLSDRLAAVQAVLYLIFNEGYAASAGANLVRNDL
                     CAEAIRLARVLRELLPNEPENTGLLALMLLQNSRRRARVNDRGELVTLEDQDRSLWDR
                     EEIAEGVRLLEHALPMARVGNYQLQAAIAAVHCEAPTAAETDWPQIVALYEELMRISS
                     SPVVALNHAAAVAMAEGAENGLRLIDAAGAGGSLNNYYLFHAARADLLRRLNRLSEAQ
                     AAYERALSLTTNLIEQNYIRRRLDETSSVH"
BASE COUNT         1261 a         1572 c         1791 g         1219 t
ORIGIN      
        1 gctgctcgcg agaatcaaac cgaacaatgc cggcgccgct gccgccgatg ttggctttca
       61 ccacgttcgg gaaccgcaga ccttcagacg cctcgacagc gagcgccggc gagttgatca
      121 cgcgagcctt tggatagggc aggtttagtg attcgagtaa tgagagttgg cgcgcttttg
      181 aaatctcgat ggcgaaggct ttctcgccgt tgatcacgcg cgtgcccaaa ctcgcgaggt
      241 ggttgagata ctggagcgtg tagagaattc cgtggccgtg gctgcgcagg taggctgacg
      301 ggctcatgcg attgaacagc accgtgtaag cactgtcggt ctcgcttggg tcgtacgaat
      361 gacgagtcgc atcaagcttg gcatacggca cggctcgtcg gtcgagttcg gcgaagagcg
      421 gccggaacca gtcggggtgt tcgtagtaga tggctagcgt gtttgtatcg gtcattgttt
      481 tttcctcgag ttgcaagcaa taaaaaaggc cgctcaaaag agcggcctgg gtgaatgctg
      541 atgattactt taaagctaga tcacatacac gacagtccgc tcatttgacg gcatacaaca
      601 acacaaacaa gcacacatct gatcgccttt attcgctgcg gcaatcatct gcttggaccg
      661 tgacgaaatc atctgtgttt tccggaggcc gtaaacttac tccagccgcg ccgcgggtgt
      721 caacgccgat ctacgctggg gctgacacta gtccttttat gctagtgggg ggcgagaggg
      781 cttcctgggc ccgaagggct tttcaatttc cggggaagtt ggtttcatta cgctgttaca
      841 atgtgggact tttaggagac tagatgagac gcaacatttc gatggcgctg ctgggcttgg
      901 ttctgttgtt tggtagcgca gcgagttcga cggcgcaggt gaagcgagtg cagatgcgca
      961 tcgcggggta tttgtgcggc aattgagtgt acaacattca gaaggccgtg agccgtctcg
     1021 acttcgcacc gaagctaaaa gagatcgaag tcacagactt taagaaaggc ttgggggttt
     1081 ttacgcccaa gccggataaa gctgtgtcat tcgcagcgct gaaagagagt ctgaagaagg
     1141 cgggatacac gctcgcctca gcggagataa ctgttgccgg aaagatcggg agaaacggcg
     1201 agggttgggc cattgtcgca gatgcatcgg gacaacggtt cgcgctggaa ggtccaaatg
     1261 tcgatcaggc gctcgcgggc gcaaaggatg gcgacgcgat cgaattgaca ggtgactgga
     1321 agacaacggg taccggacca aaagcgcatg agacgattac tgcgccggca cgcaaaacgg
     1381 tcgcgagtag acgtccgggt tcatttccga tctttgtgaa ggcgggcttc tcggagtcat
     1441 ctcttgcaga gaggggaact tcaacaggtc ccgcgcctgt ggcgccaatc cgcgtgacgt
     1501 cgcctggctt gaccgtatac aaaggcggcg cgatcacgcc gcgcgtttac ttcatcaaac
     1561 aacatctcgg cacgctcgaa gttcatcgac aagttctcga tttgagcgtc tcttacacgc
     1621 cgtcgccgcg gttgcagttg gaaatcgaag cgccgttctc gcgtacgtct tatgacgatg
     1681 gaacatcatc aggctctggg tttggaatcg gaaacgtaac ggcttgggcc aagtatcggt
     1741 tttttcgcac ggtcgagact tacggagacc ggcaagctgc gtttcgcgtg gggcttgaat
     1801 taccgacagg caagaagacc gcgccgagtc aggcgcaact caacctcccc acgtttgtgc
     1861 gacaacagct tactccgatc agcggcgggc tcagtccgca tctcgatatc gccttttcgc
     1921 cagccggtgg acgtttcatc tttggcggaa acgcccaagc gatttttcgc accgaacgcg
     1981 acggttttcg catgggccac gagcaacgcc tcagcacgga cctcgagttt gtcatcccgc
     2041 gagatccaca caagcccggc ggcgaactgt ttctgatttt ggaaaccacg ttcgttcatc
     2101 gcagcaacgg ccgcctcgat ggcctcacgg ttaacggaag cggagccacc gaatactatc
     2161 tggctcccgg cctccagtac gccgcacatc cacgcttcgt agtcgagggc agcttccaat
     2221 ttccggtcgt gcgcaacaca ggccctttgg ccttacgcac cgatcgaaac ctcctgctcg
     2281 gagtccgcta tctattctga ggctgattcg aaaactcctt gacacgtcca tacgttgtgc
     2341 cgtatacaag cagccttttg cgcgagcgcg cggtgaggaa ttcgatgagg aactacacac
     2401 aacgtccgac caaacggcac cccgaggctg cgcgcctggt cgtgtcagtt ggtagagggc
     2461 ctatcacgtc ttaatcagcg ggagcggact cccgctcccg aatctcaaag aaaactcaag
     2521 agaattgaag gagcgggcag cttccccgga agctcaaggc ccgctcctta gttttaaatt
     2581 gtcgatgaac taaacttggg aagaaggtaa gtatgcctta cgaaaaacta acaatcggtg
     2641 gcgcgcatca cgacattctt tcgtgggcga atcatgagtt cagcatcgaa gagcagaaca
     2701 tgctgcgcaa tgtgtcgcgc ttgccgtgct tgttcaagca cgtcgcgctg atgcccgatg
     2761 cgcacctcgg cgtcggaagc atggttgggt ctgtaattgc tacaaaggaa gcggtgattc
     2821 ccgcaacggt cggtgtggat atcggctgcg gaatgatggc gttgaagacg ccgttcaaga
     2881 gccacatcct cgagggcaag ttgaaggact tgagactcgc gatcgaggaa gcggtcccgg
     2941 ccggtttcag cgagtacagc gaatcagttg acgaatcgtc tcactgggaa ggctggaagg
     3001 acttcgccga tctgcacgca ggcgtgcgcg atcgtaaagc gaaagcgatg aaacagctcg
     3061 gcacgctcgg tggcggcaac cacttcatcg aagtctgtct cgacacggag aacttcgttt
     3121 ggttgatgct ccactcgggc tcgcgcaaca tcggtaagga gctcgccgac cgtcacatct
     3181 cgaccgccaa gtcgttgtgg aaactgtcgg agcttccggc gcccgatctc gcttacttca
     3241 ttcagggcac acctgagttt gcggcttact ggaaagattt gaagtgggcg caaagctacg
     3301 cgatgaagaa ccgcgagatc atgatgacgc gactgctgaa ggtattcaac aagctcttca
     3361 atcaccgtca gccgttcaag cctgagcttc aggtcaactg tcatcacaac tacgttgcgc
     3421 tcgaagagca ttacggcgaa aaggttttcg tcacgcgcaa gggcgcaatc aacgcgggca
     3481 aagacgtgta cggcatcatt cccggatcga tgggcgcgaa gtcgttcatc gtgaaggggc
     3541 gcggcgcggc tgagagtttt acttcgtgct ctcacggcgc gggccgcaag atgtcgcgcg
     3601 gcgcggcaaa gcgtgctttc accgcggatg atctcgcgcg tcaaaccgcg ggcgttgaat
     3661 gccgcaaaga cacgggcgtg ctggatgaaa ttccgggcgc ttataaatcg attgaagcgg
     3721 taatgaagaa ccaggaagac ctggttgaag ttgtcgctga gatcaagcag gtcgtttgcg
     3781 tgaagggctg aagtgttggc ttcagtcctt caccaaacgt taggggctaa cttaggcggc
     3841 gcgtgcggcg gggttgacca caggttgttt tgctggaacc ggcttggtcc ggaacgacaa
     3901 cgctgcacgt atctcacgcc agtgaatcga aatgtcggcg aagaccatcg acagcgccag
     3961 gcacgaccag atgattgcct gcacgatctc gactccgagt tgttcccaac cagtgattcc
     4021 catcacaaag cgagcggcga tgaagaccag tgcgattgcg taactgcgcg tggcccactg
     4081 acgatgcaga gcaatcttgc gtctgaccgc gaacagaaac gcgagcagcg tggcgctcat
     4141 cagcatcgtc gcgtcgacga cgccgagaat cgtgaacgaa cgcggaccac ccatgcgctc
     4201 ctggtaatac tggatgtaag cgcccatcgg cgcgagagcc agtgcgccga cgacgtagaa
     4261 gcggcccatc acgcgatgcg ctttggtaaa tcgttgccgc atgcgctcgg aaaactgaaa
     4321 gggcgcaaag agcagcacga tcgcgccgaa aatgccgtgg ggcaacagcc accacttaaa
     4381 ggcttcgtaa cgctgccagg caggatgttc tgagtcgata agaaagcgct cgttgtggta
     4441 catgacgtaa agacttgcga gcgcgattac gataaatgtg acgcgttttg cgttgagttt
     4501 catagggcac ctcttgcctc tctgatccac taacgcgaac ttttgccgta tttagggcca
     4561 cttggcgggg aaattcagtg gacggaactc gtttcgtcca accggcggcg gatgtagttt
     4621 tgctcgatga gattggtggt gagcgagagt gctcgttcgt aagctgcctg cgcttcggag
     4681 agacgattca ggcggcgcaa gaggtcggcg cgcgcggcgt gaaagaggta gtaattgtta
     4741 agtgagccgc cagcgccggc ggcgtcgatc aggcgcaggc cgttttccgc gccttcggcc
     4801 atcgcgaccg cggccgcgtg attcagtgcg accacgggcg acgaagagat ccgcatcagc
     4861 tcttcgtaaa gcgcgacgat ctgcggccag tcagtttcag ccgctgtcgg cgcttcgcaa
     4921 tggaccgcgg cgattgcggc ttgcagttga taattgccga cacgggccat cggcagggcg
     4981 tgttccagca gccggacgcc ttctgcgatc tcttcgcgat cccacagcga acgatcctgg
     5041 tcttcgagcg tgacgagttc gccgcgatcg ttcacgcgcg cgcggcggcg tgagttctgc
     5101 aacagcatca acgcgagcag accggtgttt tccggttcgt tcggcagcag ctcgcggagt
     5161 acgcgtgcta aacggattgc ttccgcgcac agatcgttgc gcacgagatt cgcgccggcg
     5221 ctcgctgcgt agccttcgtt gaagatgaga taaagcaccg cctgaacagc agcgagacga
     5281 tcgctgagac gttcgactga tggaatctcg taagggatgc ccgcgacgcg aatcttctgt
     5341 ttcgcacgca cgagccgttg ggccagcgtt ggttcaggca acagaaacgc gtgtgcgatc
     5401 tcggtggtag tgaggccgcc gagtgtgcgc agcgtgagtg ccacctgagc gtcgcggctg
     5461 agcgacgggt ggcagcaggt gaagatcaaa cgtaagcgat cgtccggata ttccacggct
     5521 tcttcgatcg atgcgggatc ggcgtatggt tgcagccgcg ttgtttcgta cgcgacttcc
     5581 ggctgtttgt cggtgcgggt cttgtcgcgg cggatcgcgt cgagcagtct gcgatgagcg
     5641 accgttgtaa gccacgcgcc cggattgcga ggtggaccat cgcgttccca actggcggcg
     5701 gcggagagaa acgcttcgtt cagcgcttct tcggcgagat cgaatgaacc cgactggcgg
     5761 atcagcgtag cgatgatccg cccgtactct tcgcggaaga cctgttcgag tagttcgctc
     5821 gcctgcgaca tgcagcgagc gtt
//
LOCUS       DASWTX010001022         3966 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_231641, whole genome shotgun sequence.
ACCESSION   DASWTX010001022 DASWTX010000000
VERSION     DASWTX010001022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3966
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231641"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1177
                     /locus_tag="VGD38_15600"
     CDS             <1..1177
                     /locus_tag="VGD38_15600"
                     /inference="COORDINATES: protein motif:HMM:NF014758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY0729505.1"
                     /translation="TINAEFEVPYLAHATMEPLNCVVDLRADSCEIWTGTQFQTGDAA
                     AAAAIAGLKPAQVKIHTTLLGGGCGRRANPANDFVAEAVHIAKAAKVPVKVVWTREDD
                     MHGGYYRPMWYDRMVGAVDDKGNPIAWTHTIVGQSILAGTPFEQFLVKDGIDGTSVEG
                     AADLLYGIPNVQVDLHTPKLGVPVLWWRSVGHSHNGFAVEAFFDELAHAGGKDPYELR
                     RTLLANQPRMKGVLELVAQKANWGSKPPAGRGRGIATHFSFESYVAQVAEVSVSKAGD
                     VRVHRVVCAVDCGRVINPDSVKAQMEGAIVFGLSAALKDAITFEGGRVQQRNFHDYQM
                     LRMEESPEIEVHIVPSTESPTGVGEPGVPPVAPAVANAIFAATGKRVRRLPIGRVTV"
     gene            1174..1743
                     /locus_tag="VGD38_15605"
     CDS             1174..1743
                     /locus_tag="VGD38_15605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729506.1"
                     /translation="MTRAFLVIVVAGFLLTATIATKAVVQRDDARARAAFLSVVPVLK
                     HPRCLNCHATGDFPRQGDDSHPHAQNVRRGADGNGKFGQKCSACHQEQNVAGPNMPPG
                     APHWHLPPANMPMIWEGKTAGQICQQLKDPKQNNGKSVAQIVQHVTEDKLVLWGWNPG
                     EGRTLPPMSHAEFAAKFAEWARYGAACPQ"
     gene            complement(1765..1944)
                     /locus_tag="VGD38_15610"
     CDS             complement(1765..1944)
                     /locus_tag="VGD38_15610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729507.1"
                     /translation="MKKSDLSDAASNLLILGSVSVAFMPFLLGDRLVLVVGSLLKESG
                     VLIDQFGNYVTWLFS"
     gene            2205..2957
                     /locus_tag="VGD38_15615"
     CDS             2205..2957
                     /locus_tag="VGD38_15615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729508.1"
                     /translation="MPRQTPNKNSFPRRHGGFTTIELLAMATILTVITAFGFIGITKA
                     RASVRLSGAAREYAAHVERARIFSIRNHADDAGERATITINDDKASYDVTMDIDGDGD
                     MDTRTVTLPSGITFETVETISFDWRGRTVSTVGGITTPNAQVSIRLLNSDDSISVDVT
                     GSGDVTIDSKVFDDSVPNVTLKIGDLATGATPVPTATPAVADASPSPLPIGSIDPTDE
                     VPTPTPILGDGGLPVPTPTPLFPAPSTRTRQP"
     gene            2960..3199
                     /locus_tag="VGD38_15620"
     CDS             2960..3199
                     /locus_tag="VGD38_15620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729509.1"
                     /translation="MGTQVSTTVKVSHTSDTTVAISATSSKPSDLQVTPASAQSVGAG
                     SATAFTLKSKKSLGTYSVTFSAGCGSKTVPVVVLL"
     gene            3209..3655
                     /locus_tag="VGD38_15625"
     CDS             3209..3655
                     /locus_tag="VGD38_15625"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEY0729510.1"
                     /translation="MKSKIDNRKNERGFTLIETAISMVVMMIAGLAVSSLFVFSTQNN
                     VGGNERALAMAVAQQQMEQLRSLSFDSTSLNAGTTTSTVTTSDRDYTVVKAITDEVNP
                     NNSVKQLRRITITVTPVGGARGNWTRTPVTLVALRSTIAQGSFAVQ"
     gene            3680..>3966
                     /locus_tag="VGD38_15630"
     CDS             3680..>3966
                     /locus_tag="VGD38_15630"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEY0729511.1"
                     /translation="MRSANNEKGFSLLELVIAMTVTLVIMGLSSTLLASAFKSRSRED
                     RKSDAIADVQRAMNIMTREISNSGLKLPSGLPTISANGVVAGDSDSESLRVV"
BASE COUNT          880 a         1195 c         1138 g          753 t
ORIGIN      
        1 aacaatcaac gcggaattcg aagtgccgta cctggcccac gcgacgatgg agccgctcaa
       61 ctgcgtggtc gatctgcgcg ccgactcgtg cgagatctgg accggtacgc aattccaaac
      121 gggcgacgcc gcagccgctg ctgccatcgc cggattgaaa ccagctcaag tcaaaattca
      181 tacgacgctt ctcggcggcg gctgtggacg ccgcgcgaat cccgcaaacg atttcgttgc
      241 tgaagcagtt cacattgcga aagccgcgaa ggtgccggtt aaagttgtct ggactcgcga
      301 agacgacatg cacggcggtt actaccggcc gatgtggtac gaccgcatgg ttggcgctgt
      361 cgacgacaag ggaaatccca tcgcctggac acatacgata gtcggccagt cgatactcgc
      421 gggaacaccg ttcgagcagt tcctcgtcaa agacggaatt gacggcacat ccgtcgaagg
      481 cgccgcggat ctgctttacg gcatcccaaa cgttcaggtc gatctgcaca ccccgaagct
      541 cggcgtgccc gtgttgtggt ggcgttcggt gggccactcg cacaacggtt tcgcggtcga
      601 agcgttcttc gacgagctcg cacacgcggg tggcaaggat ccttacgaac tgcgccgcac
      661 gctgctggcg aatcaaccac gtatgaaagg cgtgctcgag ttggtggccc aaaaagcgaa
      721 ctggggctca aagcctccag ccggtcgcgg ccgcgggatc gcgacgcact tctcgttcga
      781 gagttatgtg gcccaggttg cggaggtttc cgtttccaaa gccggcgacg tgcgtgtgca
      841 tcgtgtcgtg tgtgctgtcg attgcgggcg ggtcatcaat cccgattcgg tgaaggcgca
      901 gatggaaggc gcgatcgttt tcggtttgag cgccgcgctc aaggacgcga tcacgttcga
      961 aggcggccgc gtgcagcagc gaaactttca cgactatcag atgctgcgca tggaagaatc
     1021 gccggagatt gaagtgcaca tcgtgcccag caccgaatcg ccgacgggcg tgggcgaacc
     1081 gggcgtgccg ccggtcgcgc ccgctgttgc aaacgcgatc ttcgcagcga ctggaaaacg
     1141 tgttcgacga ttgccgattg gcagggtgac agtatgacga gagccttttt ggttattgta
     1201 gtagctggtt ttctgctgac cgcgaccata gcaacgaaag ccgtggtcca acgcgacgac
     1261 gctcgtgcgc gcgccgcgtt tctctccgtc gttcccgtct tgaaacatcc gcgttgcctg
     1321 aactgtcacg cgaccggcga cttcccgcgc cagggcgacg acagccatcc gcacgcgcag
     1381 aacgtcagac gcggcgccga cggcaatggc aagttcggac agaagtgcag cgcgtgtcac
     1441 caggaacaga acgtcgctgg tccaaacatg ccgccgggcg cgcctcactg gcacctgccg
     1501 cccgccaaca tgccgatgat ctgggaaggc aaaaccgcgg gccagatctg ccagcagcta
     1561 aaggatccca aacagaacaa cgggaagtct gtcgcgcaga tcgttcagca cgtcacggaa
     1621 gataaactcg tgttgtgggg atggaacccc ggcgaagggc ggacgttgcc gccgatgagc
     1681 catgctgaat ttgccgctaa gtttgctgag tgggccaggt acggcgccgc ttgtcctcaa
     1741 tagttgggga gagtggggaa aggtctacga gaacagccag gtcacatagt tgccgaactg
     1801 atcgatcagc actccgcttt ctttcagaag actgcccaca accaggacca accgatctcc
     1861 caacaggaac ggcatgaatg ccacggagac cgagcccaaa atcagcaggt tgctggcggc
     1921 gtcggacaaa tctgatttct tcataagcta atcctcacga tccagccggg ctttttgcag
     1981 caaaaaatat gcccgcaaaa acctcagtat tttgcgcgaa accgtgattt caatctgacc
     2041 tctcaccagc caagctgatt gatcttctgt caagtggatt gatccccggt tggaccatcc
     2101 atagaacgtt tacgcgaaaa ctcttgtggc accacccttg ctgatgtggc gcttcgggtc
     2161 gccacttcga cccgcatttg aaaaactgac ttggaccacg aacaatgccc agacagactc
     2221 ccaacaaaaa ttctttcccg cgccgccacg gtggtttcac aaccatcgaa ctcctggcga
     2281 tggcgacgat ccttaccgtc atcaccgcct tcggcttcat cggaatcaca aaagctcgcg
     2341 cctcggttcg tctctcaggc gccgctcgcg aatacgccgc tcacgtcgaa cgcgcacgca
     2401 tcttctcgat tcgcaatcac gccgacgatg cgggcgagcg agccaccatc accatcaacg
     2461 acgacaaggc gagttacgac gtcacgatgg acatcgacgg cgacggcgac atggacacgc
     2521 gcactgttac attgccttcg ggcatcacgt tcgaaacggt cgagacgatc tccttcgatt
     2581 ggcgcggacg caccgtgagc acggttggcg gtatcactac gccgaacgcg caggtttcga
     2641 ttcggctgct gaacagcgat gattcgatct cggttgacgt taccggttca ggcgacgtga
     2701 ccatcgacag caaggtgttt gacgattcag ttcctaacgt cacgctgaag attggcgatc
     2761 tcgccacagg cgcgacgccg gtcccgacgg cgactccggc cgtcgccgat gccagcccat
     2821 cgccgcttcc gatcggatcg atcgacccaa ctgacgaggt tccgacgcca actccgatcc
     2881 tgggcgacgg tggtttgccg gttccgactc cgacgccgtt gttccctgca ccatcaacac
     2941 ggacccgaca accgtgatca tgggcacgca ggtatcgacc acggtcaaag tcagtcacac
     3001 gtccgacacg actgtggcaa tttcggcaac gtcgagtaaa ccctccgacc ttcaggtaac
     3061 gcccgcgtca gctcaatcag tcggcgccgg tagcgctact gcgttcacgc tcaagtcgaa
     3121 gaagtcgctc ggtacttatt ccgtgacgtt cagtgccggc tgtggatcga aaacagtgcc
     3181 ggtcgttgtg ctgctctaag gagtcgaaat gaaaagcaaa attgacaacc ggaaaaacga
     3241 acgcggcttt acgttgatcg agaccgcgat ctcgatggtg gtgatgatga tcgcgggact
     3301 cgcagtctcg tcactcttcg tcttctcgac gcagaacaac gtcggcggca atgaaagagc
     3361 gctggcgatg gccgtggccc aacaacagat ggaacagttg cgcagtctga gttttgacag
     3421 caccagcctg aacgccggaa cgaccacgag cacggtgacc accagcgatc gtgattacac
     3481 cgttgtgaaa gccatcaccg acgaagtcaa cccaaacaat tcggtcaagc agttgcggag
     3541 aatcacgatc acggtcacgc ccgtcggcgg cgcgcgcggt aattggacgc gcacaccggt
     3601 cacgctcgtc gcactccgtt caactatcgc ccagggaagt ttcgccgttc aatagcccgc
     3661 ctgcccagag gaaatgcaaa tgcgaagcgc aaacaacgaa aaaggatttt cattgctcga
     3721 gttggtcatc gcgatgaccg tcacgctggt gatcatgggc ttgtccagca cgctgctggc
     3781 cagtgctttc aaatcacgct cgcgtgaaga tcgaaagtct gacgcgatcg ccgacgtgca
     3841 acgcgcgatg aacatcatga cgcgcgagat cagcaactcc ggtttgaaac tgccttcggg
     3901 actgccgacc atctccgcga acggcgtcgt cgccggtgat agcgacagcg aatcgctccg
     3961 cgtcgt
//
LOCUS       DASWTX010001023         1703 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_104208, whole genome shotgun sequence.
ACCESSION   DASWTX010001023 DASWTX010000000
VERSION     DASWTX010001023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1703)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1703)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1703
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104208"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..332)
                     /locus_tag="VGD38_15635"
     CDS             complement(<1..332)
                     /locus_tag="VGD38_15635"
                     /inference="COORDINATES: protein motif:HMM:NF013492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEY0729512.1"
                     /translation="MALLEIVKWPAPVLDNPADPVIEFDDKLEKLVSNMFETMYAAPG
                     VGLAAVQVGVPQRLFVMDCSAGKDPSQRVVMINPEVMRVEGTQNGDEGCLSFPGIFTP
                     VERNLRAIV"
     gene            complement(399..1568)
                     /gene="aroC"
                     /locus_tag="VGD38_15640"
     CDS             complement(399..1568)
                     /gene="aroC"
                     /locus_tag="VGD38_15640"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEY0729513.1"
                     /translation="MLRFTTAGESHGRALVAIIEGLPAGLPVDQQQIDNELRRRQLGY
                     GRGGRMKIERDHAEILNGVRHGLTLGSPLTLMIENKDWPNWTDVMAAEPREIEPEKSR
                     RLKRPRPGHADLPGGLKYDVRDLRNILERASARETTARVACGALAKQLLACFGIEVRS
                     HVIQLGGIPEKPIELSWNEIAAISDDAPLHCADGEAEQKMIALIDETRHRGDTLGGIF
                     EVAVRGVVPGLGSHTAWDLKLDGLLAQAVMSIPAVKAVSIGAGSEASSLPGSEVHDEI
                     AYNAGTREFIRETNRAGGLEGGITNGEEIRVRGHLKPLSTLRRALRSVDIDTKEEETA
                     AFERSDVTAVPAAGVIGESMVALTLARAMREKFGGDSLGEMKRNFEGYREQLRGY"
BASE COUNT          323 a          529 c          474 g          377 t
ORIGIN      
        1 acgatcgcgc gcaggttgcg ttcgacgggc gtgaagatgc cgggaaacga caaacatcct
       61 tcatcgccat tctgtgttcc ttcaacgcgc atgacttcgg gattgatcat cacgacgcgt
      121 tgtgaaggat ccttgccagc cgagcaatcc atgacaaaca accgttgcgg cacgccaacc
      181 tgcacggcgg cgagaccaac gcccggcgcg gcgtacatag tctcgaacat gttgctgaca
      241 agcttctcga gtttgtcgtc aaactcgatg acaggatcag cgggattgtc gagcaccggc
      301 gccggccatt tcacaatttc caataaagcc ataggtcgtg attttacgcg gaagtctgcc
      361 ttaacgctaa tccgcttctc ttccgtgtaa tccgcgtgtt aataccctcg caactgctcg
      421 cgataccctt caaaattgcg cttcatttcg cccagactgt cgccgccaaa cttctcgcgc
      481 atcgcgcgcg cgagcgtgag ggcgaccatc gattcaccga tcacgcctgc tgccggaacg
      541 gccgtgacgt cggaacgttc gaacgctgcc gtctcctctt ctttcgtgtc gatgtctacc
      601 gaacgaagtg cgcgacgcag cgtggaaagc ggttttaagt gcccacgcac gcggatctct
      661 tcgccgttgg tgatgcctcc ttcgagtcca ccggcgcggt ttgtctcgcg aatgaactcg
      721 cgcgtccccg cgttgtaggc aatttcgtcg tggacttcgg aaccgggcag actgctcgct
      781 tccgaacccg cgccaatcga caccgctttg accgccggaa tcgacatcac ggcctgggcg
      841 agcaagccgt cgagcttcag gtcccacgca gtgtgcgaac ctaatcccgg cactacacca
      901 cgaacagcca cttcaaagat cccgccaagc gtgtcgccgc gatgtcgcgt ctcgtcgatc
      961 aacgcgatca tcttttgttc ggcctcacca tctgcgcagt gcaacggcgc gtcgtcggaa
     1021 atcgcggcaa tctcgttcca gctcaactcg atcggctttt cgggaatgcc gccgagttga
     1081 atcacgtgac tgcgcacttc gattccaaag cacgcgagca actgtttcgc gagcgcgccg
     1141 cacgcaacgc gcgcggtcgt ttcgcgagcg gatgcgcgtt cgaggatgtt gcgcagatcg
     1201 cgcacgtcgt acttcaaacc gcccggcaaa tcggcatgac cgggtcgcgg gcgtttcaaa
     1261 cgccgggact tctcaggctc gatctcgcgt ggttccgcag ccatcacgtc ggtccagttg
     1321 ggccagtcct tgttttcgat catcaaggtg agtggcgagc cgagtgtgag tccatgtctc
     1381 acaccgttca ggatttccgc gtgatcgcgc tcgatcttca tgcggccgcc gcggccgtaa
     1441 ccgagctggc gccgtcgtag ttcgttgtct atttgctgct ggtcgaccgg cagacccgcg
     1501 ggcaggccct cgatgatcgc gacgagcgcg cgtccgtgtg attctccggc tgttgtgaat
     1561 ctgagcatca gtttaagaat tcctcggcga agatgtttcc tcttccgaga ataccatgag
     1621 gatcgaaatg ctttttcaac gcggccattt cacggagctg ggcgtcgctg tcaaagagtc
     1681 gcaggtagtc gcgttttaac ttg
//
LOCUS       DASWTX010001024         1582 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_142542, whole genome shotgun sequence.
ACCESSION   DASWTX010001024 DASWTX010000000
VERSION     DASWTX010001024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1582
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142542"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..554)
                     /locus_tag="VGD38_15645"
     CDS             complement(<1..554)
                     /locus_tag="VGD38_15645"
                     /inference="COORDINATES: protein motif:HMM:NF024978.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4136 domain-containing protein"
                     /protein_id="HEY0729514.1"
                     /translation="MRGRILNLFLIAGLMLACSVAATAQEIRYNYVEGTDFSKYKTYK
                     WVRLPKANYPNSILDGQIMQAIDAQLALKGLTRTEENPDLYVIYQAAVDQEKQWNSYS
                     TGGDMWGWGGWGGWGGMSTTTTTSSTINIGTINCDIYEVASKKQIWRGEASKTLGSGK
                     DPKKVQKNLNKAMAKLFKKYPPPV"
     gene            678..>1582
                     /locus_tag="VGD38_15650"
     CDS             678..>1582
                     /locus_tag="VGD38_15650"
                     /inference="COORDINATES: protein motif:HMM:NF016241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF481 domain-containing protein"
                     /protein_id="HEY0729515.1"
                     /translation="MNQSVRMLCRLAAIVFLVLLLQLTATAKSVEDVVVLKNGDRMTG
                     EIKGLQRGELRIKSDYMAEAVRLDWSKVQSLESKSTFMIWLVDGKLVTNVMRLLPTNS
                     DQAANFVIGNSQENIRVHQLDVIRITPADRGFWRRLEGSIDLGMSFTSGNDQYQTQLT
                     ATTTYRTGAHSFTASLDSAFSGQTEGTSTTRNQFTFDYRRQLNERWYVGGLFDLLRSD
                     QQSLRLRTTAGGLIGRNIKQTEHTRLSVFGGLVGARENYTTVLGRPEATNADGLAGVD
                     FFTFRFSKTDIRSRLSVFPSLTTPGR"
BASE COUNT          337 a          440 c          422 g          383 t
ORIGIN      
        1 ttcaccggcg ggggatactt tttgaaaagt ttcgccatcg ctttgttcag gttcttctga
       61 accttcttgg gatctttgcc ggagcccaga gtcttgctcg cctcgccgcg ccagatctgt
      121 ttcttgcttg cgacttcgta gatatcgcag ttgattgtcc cgatattgat cgttgaggaa
      181 gtggtggtcg tcgtagacat gccgccccaa ccgccccagc cgccccagcc ccacatgtca
      241 ccaccagtgc tgtaggagtt ccactgcttc tcctgatcga ctgcggcttg atagatcacg
      301 tacagatccg ggttctcttc ggttctcgtt aaccctttca gggccaactg agcgtcgatc
      361 gcctgcatga tctggccgtc aagaatcgaa ttgggataat tggcctttgg taacctgacc
      421 cacttgtagg ttttgtactt tgaaaaatcc gtaccctcga cgtagttgta tctgatctcc
      481 tgcgctgtcg cggccacgga gcacgcgagc atcaatccgg cgatcagaaa caagttcaaa
      541 atcctgcctc tcatcttcac actacccctt tctgcagctt tcttttactg agcttaagga
      601 accggacacg cgcggataac tgtcactttt gacaggcgag atcacgcctt gaagcgtgca
      661 aaaagtagag aatgaaattg aatcaaagtg tacgaatgct gtgccgcctg gccgcgatcg
      721 ttttcctggt gttgttgctg cagttaaccg cgacggcgaa gagcgttgaa gacgtcgtgg
      781 tgttgaaaaa cggcgatcgt atgacgggag agatcaaggg gctgcaacga ggcgagctca
      841 ggatcaagtc tgactacatg gccgaggctg tgcgtctcga ttggtccaag gtccagagtc
      901 tcgagagtaa gtcgaccttc atgatctggc tcgtggacgg aaagctcgtc acgaacgtca
      961 tgcgtttgct tccgaccaac tcggaccagg ctgcaaattt cgtcatcggc aattcgcagg
     1021 agaacatccg tgtgcaccag ctcgacgtga tccgcatcac gcctgctgac cgcggcttct
     1081 ggcggcggct cgaaggatcg atcgacttgg ggatgagttt tacgagcggt aacgatcagt
     1141 atcagactca actcactgca accaccactt atcgcaccgg cgcgcactca tttaccgcat
     1201 cgctcgattc ggctttcagc ggacaaacag aaggcacgag cacgactcgc aatcagttca
     1261 cgtttgatta tcggcggcag ttgaacgagc gttggtacgt tggcggactt ttcgatctgt
     1321 tgcgcagcga tcagcagagt ctgagacttc gcaccacggc cggtggtctg atcggccgca
     1381 atatcaaaca gacagagcac acgcgtctgt ctgtgtttgg cgggctcgta ggcgcgcgcg
     1441 aaaattacac aaccgtactc ggcagaccgg aagccactaa cgccgatggt ctggccggcg
     1501 tcgatttctt tacttttcgt ttcagcaaaa cagacatccg ttcgcgtctc agcgtgtttc
     1561 ccagtctcac cacgccgggc cg
//
LOCUS       DASWTX010001025         1914 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_250848, whole genome shotgun sequence.
ACCESSION   DASWTX010001025 DASWTX010000000
VERSION     DASWTX010001025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1914
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250848"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..360
                     /locus_tag="VGD38_15655"
     CDS             <1..360
                     /locus_tag="VGD38_15655"
                     /inference="COORDINATES: protein motif:HMM:NF037015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HEY0729516.1"
                     /translation="YYTATTPTIHNRISRFTASGDVALAGSETIIMELPNLSSATNHN
                     GGAIHFGPDGNLYVAVGVTRVEFLVNGSLQCTDTTAPYTCNWRVPSAPNKTHTLQARA
                     FDQAGNSATAAVTVRSN"
     gene            complement(446..1579)
                     /locus_tag="VGD38_15660"
     CDS             complement(446..1579)
                     /locus_tag="VGD38_15660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729517.1"
                     /translation="MIEREDVRPRVLRDVPARNLAYRLTADVALPSSLSPDDLPDKDV
                     NVANAFAAKRENDALLRTIVSPDGKRVLALYGTETEPSPAFRIDLYNSDGEFLRNLIP
                     PDISCLFPETVAWSPDGRFITFIARKRLSPSPTPTPPDQPAPEPTLSPLPYASPVATP
                     SIAPLFPPVASFNTEQIYICNRDGYDLKPLTSREGLIYFYFAWVPDSHALVALACKED
                     EWNEREKKYKQPAGRPRLIAPDGNERLLDDGLTEALPVWSPDASKIATAFDTDIAIYD
                     AGGSTPTQGRVPLGEQLIAASVIYEERTATKKADANAAASPTPASSTAAPPSFNPIVS
                     FQWPSPETLYFKTAYVRVMPSETINTFQRWHQLSLSAQAAVLK"
     gene            complement(1664..>1914)
                     /locus_tag="VGD38_15665"
     CDS             complement(1664..>1914)
                     /locus_tag="VGD38_15665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729518.1"
                     /translation="EEITCDLIGAMAARAYVAKTPGYESIARRLARSIQHNCVEIDEG
                     DEDHLSPRQTIRALLALNPVLVRELVNDREERTPGRKL"
BASE COUNT          402 a          602 c          541 g          369 t
ORIGIN      
        1 tattacacag ccacaacgcc gacgattcac aatcgcatca gccgttttac tgcttcgggt
       61 gacgttgcac tcgccggtag tgaaacgatc atcatggagc taccgaatct cagcagcgcg
      121 acgaaccaca acggcggcgc gattcacttt ggaccagacg gcaatctgta tgtcgctgtc
      181 ggcgtcacgc gcgtggaatt tctcgtgaac ggctctctgc agtgcaccga cacgacggcg
      241 ccctacactt gtaactggcg agtcccgagc gcccccaaca agacccacac gctccaagcg
      301 cgcgccttcg accaggccgg caactccgcc accgccgcgg taaccgtccg ctcgaactga
      361 tcatttgaga accgcggcct gggcgcttgg ttttgcagaa gcggaatccc accgacgaag
      421 tcggtggatt gttcacttcc gcaacctact tcagaaccgc agcttgcgcg ctgaggctga
      481 gctggtgcca gcgttggaag gtgttgatgg tctcgctcgg catgacgcgc acgtaggcgg
      541 ttttgaagta gagcgtttcc ggcgagggcc attgaaacga aacgatcggg ttgaacgacg
      601 gcggcgctgc agttgacgaa gccggcgtgg gtgaagcagc agcattcgcg tcggctttct
      661 tcgtcgcggt cctctcttcg taaatcaccg aagccgcgat cagttgctcg cccagcggaa
      721 cgcgtccctg cgtcggcgtg ctgccacccg catcatagat cgcgatatcc gtgtcaaacg
      781 ccgtcgcgat tttcgaagcg tccggactcc acacgggcaa cgcttccgtc agtccatcgt
      841 caagcaaacg ctcattcccg tccggcgcga tcagccgcgg ccgcccggcc ggttgcttgt
      901 acttcttctc gcgctcattc cactcatctt ccttacacgc caaagccacc agcgcatgac
      961 tgtcaggcac ccacgcaaag tagaagtaga tcaatccctc acgcgacgta agcggcttca
     1021 gatcgtatcc gtcgcgattg cagatgtaga tctgttccgt gttgaagctc gcaaccggcg
     1081 gaaacagcgg cgcgatcgac ggcgtcgcaa ccggcgatgc gtatggaagc ggcgacaacg
     1141 tgggttccgg cgcgggttga tcgggcggcg tcggcgtcgg actcggcgac aaacgcttac
     1201 gcgcaatgaa cgtgatgaac cgcccgtcag gcgaccacgc cacagtctcc ggaaacaggc
     1261 acgaaatatc cggcggtatc aggttgcgca aaaactcgcc gtcagagttg tagagatcga
     1321 tgcgaaacgc cggcgacggt tcagtttcgg tgccgtaaag cgcaagcact cgcttcccgt
     1381 ccggcgaaac aatcgtccgc agcaacgcat cgttctcacg tttcgcagca aaagcattcg
     1441 cgacgttaac gtctttgtca ggcaggtcgt ccggactgag actgctcggc aacgcaacat
     1501 ccgccgtcaa ccgatacgcg agattacgcg ccggcacgtc gcgcaaaaca cgcggccgca
     1561 cgtcctctct ctcgatcacg gatttacagc cggcggtgac aacgagcgta agaaggagtg
     1621 gaagaatcga atgagtcgaa gttagtcggc gcactttcgc cctctacaat ttacgccctg
     1681 gcgttcgttc ctcacgatcg ttgaccaact cgcgcacgag cacgggattc aatgccagca
     1741 gcgcgcggat cgtttgccgc ggcgaaagat gatcctcatc gccttcatcg atttcaacac
     1801 agttgtgttg aatggaacgc gccaaacgtc tcgcgatcga ttcgtaaccc ggcgttttcg
     1861 cgacataggc gcgcgcggcc atcgcgccga tcaggtcgca cgtgatctcc tcag
//
LOCUS       DASWTX010001026         1895 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_298710, whole genome shotgun sequence.
ACCESSION   DASWTX010001026 DASWTX010000000
VERSION     DASWTX010001026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1895
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298710"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..695
                     /locus_tag="VGD38_15670"
     CDS             <1..695
                     /locus_tag="VGD38_15670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729519.1"
                     /translation="IEGYSITEGLRRRVPLLNKLTAEDVVTTPAVFQLLPHRRAVKFL
                     DENLQPLDLDLYDVEVWKRYGWGALNSDEFRRDYEGNVEDIDLYLANTLKRARRFHEA
                     LDAVENADSPVVLLAIGGDCEETLSAPVILRDRKRNRWLTLIRPREYRTSAGVKMSKK
                     QVTAAMYAPGDGRVTRASLLGENLTRTRDRITGFTLSRYAVFGCDLHGQLPRNKTLQD
                     NTLTAIVGEVMN"
     gene            complement(692..>1895)
                     /locus_tag="VGD38_15675"
     CDS             complement(692..>1895)
                     /locus_tag="VGD38_15675"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0729520.1"
                     /translation="VHSSNGTVYPVRGVLAVDAEGDIALLKVDTPTPAIRPLSLDKTS
                     PQEGESVVVIGNPLGLEGSVTNGIVSAVRDIPTFGRIIQITAAISSGSSGSPVVNMQG
                     QVIGIATLQITGGQSVNFAIPSERISQLQVATMTSLADLVATTGRNKRAKAVQLFRDG
                     LSFLSKDDCEKALPYFEKAVESDSSYADAWAQAGFCNEKLGKHAEALEASKKAVSLRP
                     SAESYFNIGLASFYLKQYKDAAEAYRQAIKLDPYNAADAYYALGLVYRDWGKADEEIQ
                     AYKQAIRLRPDYTVAYERLGSRYLKSKKFNEAVEIYRQLSTLKPGDAYAPNSMGEAFL
                     EMNRLNDAMESFRQSIRLKPDYGKAYYNLGKCLLAMGNRDAALEQYTILTNIDPDWAE
                     KLNAIINP"
BASE COUNT          395 a          550 c          541 g          409 t
ORIGIN      
        1 tcatcgaggg ttattcaatt actgaaggtt tacgccggcg cgttccgcta ctcaacaagt
       61 tgacggccga ggatgtggta acgacgcctg ctgtatttca gctcttgcct catcgacggg
      121 cggtgaagtt tctcgacgag aacctgcaac cgctcgatct cgatctttac gacgtggaag
      181 tctggaagcg ttacggttgg ggcgcgctaa attccgacga gttccggcgc gattacgaag
      241 gcaacgtgga agacatcgac ctctatctcg caaacacact gaaacgcgcg cgccgttttc
      301 acgaagcact ggacgcggtc gaaaacgccg attcacccgt tgttttgctg gcgatcggcg
      361 gcgactgcga ggagacgctg agtgcgccgg tgattctgcg cgatcgaaaa cgaaaccgct
      421 ggctgacatt aatccggccg cgtgagtatc gcacgtccgc gggcgttaag atgtctaaaa
      481 aacaggtgac cgcagcgatg tacgcacccg gcgacggacg cgtcacccgc gcttcgttac
      541 tcggcgaaaa cctgacccgg acgcgcgacc ggatcaccgg tttcacactc tcgcgttacg
      601 cagtgttcgg ctgcgatctg cacggacaac ttccacgcaa caagacgctg caagacaaca
      661 cactcacggc cattgtcggc gaagtaatga actaaggatt gatgatggcg ttgagcttct
      721 cggcccagtc aggatcgatg ttcgtgagga tcgtgtactg ctcgagcgcc gcgtcgcgat
      781 tgcccatcgc cagcagacac ttgccgagat tgtagtaagc cttgccgtaa tccggtttta
      841 aacggatcga ctggcggaaa gattccatcg cgtcgttgag acgattcatt tcgagaaacg
      901 cctcgcccat gctgttcggc gcgtaagcat cgccgggctt caacgttgag agctgacgat
      961 agatctcgac cgcttcgttg aacttcttcg acttcaaata acgcgagcca agccgttcgt
     1021 aggcgaccgt gtaatccgga cggagccgga tcgcctgctt gtaagcctga atctcttcgt
     1081 cggccttgcc ccaatcgcga tagacgagcc cgagcgcgta gtaagcatcc gcggcgttgt
     1141 acggatcgag cttaatcgcc tggcgatatg cctccgccgc atccttgtac tgcttcagat
     1201 aaaaacttgc gagaccgatg ttgaaatacg actcagccga cggccgtaag ctgacagcct
     1261 ttttcgacgc ttccaacgct tccgcgtgtt tcccgagttt ctcgttgcaa aaaccggcct
     1321 gcgcccacgc gtcggcgtaa ctgctgtctg actcgactgc tttttcaaag taaggcagcg
     1381 ctttttcgca gtcgtctttg gaaagaaaac tcaacccgtc gcgaaagagc tgcactgctt
     1441 tcgcgcgctt gttgcggccg gtcgtcgcga ccagatccgc cagcgacgtc atcgtggcga
     1501 cttgcagttg cgaaatgcgt tcggaaggaa ttgcgaagtt gacgctttga ccgccggtga
     1561 tctgaagcgt cgcgataccg atcacctgac cctgcatgtt cacaaccgga ctgccgctcg
     1621 aacccgacga gatcgcggcc gtgatctgaa tgatgcgtcc gaacgtggga atgtcgcgca
     1681 cggcggagac gattccgttc gtcacgctgc cttccaaacc gagcggattg ccgatgacga
     1741 cgacgctctc gccttcctgc ggcgaggtct tgtcgagtga caacggccgg attgcgggtg
     1801 tgggtgtgtc gaccttgagg agcgcgatgt cgccttccgc gtctacggcc agaacgcccc
     1861 ggaccggata aacagttccg tttgacgagt gcact
//
LOCUS       DASWTX010001027         1690 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_12127, whole genome shotgun sequence.
ACCESSION   DASWTX010001027 DASWTX010000000
VERSION     DASWTX010001027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1690
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12127"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            146..424
                     /locus_tag="VGD38_15680"
     CDS             146..424
                     /locus_tag="VGD38_15680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729521.1"
                     /translation="MDEKTEQPRDLDFEQAQLAYGIIQNLVEHTRIVSDLIALMAQVL
                     DEDTTKALTQTPTWTAYLDSRRSMERTRTDIEKFAEILNQLKPNDTDA"
     gene            complement(421..918)
                     /locus_tag="VGD38_15685"
     CDS             complement(421..918)
                     /locus_tag="VGD38_15685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729522.1"
                     /translation="MLKALVFTLVTVFSQLTLTETVYDLTRNVTTVRLPSTNLSGPKG
                     QYHSLSFSIYYSHPGKTPVPPERVNFELVSVVKARSLNSDLYVVFVVDGEPIHFSSNR
                     SAIRNPVRGKPWIGEKMVFLISPEDFRKLAAAKTLAIKMGDETFEFSEELRADVRTFA
                     EGIVR"
     gene            complement(927..1319)
                     /locus_tag="VGD38_15690"
     CDS             complement(927..1319)
                     /locus_tag="VGD38_15690"
                     /inference="COORDINATES: protein motif:HMM:TIGR00149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary thiamine-phosphate synthase enzyme
                     YjbQ"
                     /protein_id="HEY0729523.1"
                     /translation="MYVLRVKSRQREELVEFTDLVRDKLKESGAREGIVVLYVQHTTA
                     GLTINENADPDVPRDMLHALRTLIPQHGMGFRHGEENSDAHIKTSLVGTSLTVPFREG
                     ELLLGRWQGIFLCEFDGGRERQVIMMVR"
     gene            complement(1320..>1690)
                     /locus_tag="VGD38_15695"
     CDS             complement(1320..>1690)
                     /locus_tag="VGD38_15695"
                     /inference="COORDINATES: protein motif:HMM:NF014669.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HEY0729524.1"
                     /translation="LIEGAIGLPFFAPGGAPGIARFFGPTGGYLIAFPAAAFITGAFA
                     EFGWDKNYPQAVAAMAIGSLIIFAGGWAWYSVLTNTPAVAAFQIAVLPYLPGDVIKIA
                     LGAAVLPTGWALLKRKASGQ"
BASE COUNT          417 a          518 c          433 g          322 t
ORIGIN      
        1 gttttctcca aaactgcaaa caaccgtcgg tctcggctat gttcgctacg aacatctcac
       61 gcccggaact gtgatccgtg ttaacgacgt cgttggtgca acagcgtcgc tccctcatgt
      121 gagaggtact tggtacgaga attaaatgga tgaaaaaacc gaacagccgc gcgatctcga
      181 cttcgaacag gcgcaactcg cgtacgggat aattcaaaac cttgtcgagc acacgcgcat
      241 cgtcagcgat ctgatcgcgc tcatggccca ggtgctcgac gaagacacga ccaaagcgct
      301 cacacaaacc ccaacctgga ccgcgtacct cgacagccgc cgctcaatgg aaagaaccag
      361 aaccgacatc gagaagttcg ccgaaatcct taatcaatta aaacccaacg acacggacgc
      421 ctaacgcacg atcccttcgg caaaggtcct tacgtcggcg cgcaactctt cgctaaactc
      481 aaacgtctcg tcacccatct ttatcgcgag cgtcttcgcc gccgctaact tccgaaagtc
      541 ttccggcgaa atcaggaaca ccatcttctc gccaatccac ggtttcccac gcaccggatt
      601 gcgaatcgcc gaacggttcg aactgaagtg aatcggttct ccgtcgacga caaacacgac
      661 gtaaagatcg gagttcaagc tgcgtgcttt aaccaccgat acaagctcga agtttacgcg
      721 ctcaggaggc accggcgtct tgcccgggtg ggagtagtaa atcgagaacg aaagactgtg
      781 atactggcct ttcgggccgg acaggtttgt cgagggcaag cgaacggtcg tgacgttccg
      841 ggtcaggtcg tagacagttt cggtgagcgt caattgacta aaaacagtga cgagcgtgaa
      901 tacgagcgcc tttagcataa acttcctcaa cgcaccatca tgatcacctg gcgctcgcgt
      961 ccgccgtcaa actcgcacag aaaaattccc tgccagcgtc ccagcaacaa ctcaccctcg
     1021 cgaaaaggaa ccgtgagtga cgttcccacg aggctcgttt tgatgtgcgc gtcggagttt
     1081 tcttcgccgt ggcgaaagcc catgccgtgt tgaggaatca gcgtgcgcag tgcgtgcagc
     1141 atgtcgcgtg gcacatcggg gtcggcgttt tcgttgatgg tgagtccggc ggtggtgtgt
     1201 tgcacgtaaa gcacgacgat gccttcgcgc gcgccggact ccttcagttt gtctctaacg
     1261 agatcggtaa actcaaccag ctcttctcgc tggcgcgact tgacccgtaa aacgtacatc
     1321 tactggcccg aagctttgcg cttcaataac gcccaacccg tcggcagcac cgcggcgccg
     1381 agcgcgatct tgatcacgtc accgggcaag tacggcaaca ccgcgatctg aaacgcagcc
     1441 acagccggtg tgttcgtcag gaccgaatac cacgcccaac caccagcaaa aatgatgagc
     1501 gatccaatcg ccattgccgc taccgcttgc gggtaatttt tatcccatcc gaactccgca
     1561 aacgcgccgg tgataaaagc agccgccgga aacgcaatca ggtaaccgcc ggtcggtccg
     1621 aaaaaccgag caatgcccgg cgcaccaccg ggggcgaaaa acggcaaccc gatcgcgccc
     1681 tcgatcaaat
//
LOCUS       DASWTX010001028         6009 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_367581, whole genome shotgun sequence.
ACCESSION   DASWTX010001028 DASWTX010000000
VERSION     DASWTX010001028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6009
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_367581"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..500
                     /locus_tag="VGD38_15700"
     CDS             <1..500
                     /locus_tag="VGD38_15700"
                     /inference="COORDINATES: protein motif:HMM:NF019643.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="BBE domain-containing protein"
                     /protein_id="HEY0729525.1"
                     /translation="GMSGYIRSGFMAPGAFTPSCIDVLTSNMTSAPSPNSLLVWTHMG
                     GKVTEVDKKETAFWHRDARFLWEVKAIWSATDQTVQNVDWAYKLGEEMAPHSIGAYCN
                     YIDPLLHNWQKEFYGDNYKRLVQIKKAVDPDEHFRFQQAIGSPFNPSPEYPPNQAPLY
                     RTFLV"
     gene            518..1882
                     /locus_tag="VGD38_15705"
     CDS             518..1882
                     /locus_tag="VGD38_15705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729526.1"
                     /translation="MKKIATIILLTVVAVTMVMMTPTTTTMAPPADPAIVLSPKIPGD
                     AQFGPLPPNPTNEQKLLAIQGDFDIYSWNTFIALNWPPGPDGNGDPNKTIGQNGDNDT
                     VWEHYRNVDNIFLPGGGKPTWNGPVSVPTQCKASYKPGMKIVTQVGKTPTVLSAFSQP
                     FNTGPIIDQNGNYTRFEILVNKPMFDYILQNTLYSKAGQKVFSGAVKFPCGVLNGPEG
                     AIMVKAAWKVINPADKGRFHTQTVLVYSPASQNPKYPASCSTQMMGLVGLHVGHKTNS
                     AAQWLWSTFEHVDNVPTEADVASGKLKSVYNYYDPKCPASKCPPNQTPPRPWNPTKVS
                     AFHSQIVRMNMFKGNEFAFESAAARNADALKLLLGVNSSSVWQNYELISTMWPTNTGQ
                     CQATPGDPLGTPAPNFLANTTLETYIQGMVPNVSSNCIECHNNATMTTPVPSDFTYVL
                     QRAQ"
     gene            1900..2424
                     /locus_tag="VGD38_15710"
     CDS             1900..2424
                     /locus_tag="VGD38_15710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729527.1"
                     /translation="MTTIAINPAPPSEAVVQSFANMSAALTGFQASFIRPFLDPTNLS
                     GIFYQYAVAQVGQPMMDALMSAFEALSTQTPPLTAQQIADQLLEVSSPTPSNQALLCQ
                     AIIAMWYLGSWYPPPFQTNGLHQVISSQAYTKSLVWNLAQAHPMGFSAFTFGYWSQPP
                     GPLTDFGVNTGGGQ"
     gene            2421..4394
                     /locus_tag="VGD38_15715"
     CDS             2421..4394
                     /locus_tag="VGD38_15715"
                     /inference="COORDINATES: protein motif:HMM:NF017050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HEY0729528.1"
                     /translation="MSNGNGASPQYDAVIIGAGVSGNLIAKQLGLAGKKVLILEAGLA
                     VPDSREEYMNNFYLALAKTPESPYPALAGRTGNQDHPAGKLPDPATLPTPRATVLGLG
                     GAPDVSYLVQAQSWVATHPKDPAPPQNPPEQPNGDVRGLQFSSTFERNGGGTSWHWLG
                     TSLRELENDIRMWTKYQHAVDWPVTYDEMQPLWAQAEKEIGVAASVVQQEPLEVVGLE
                     YPPGYQYPMGPIPTSIVDQTVSQGVSGLQVPGTLPDTPGGSDPQMYDVFVTPTPAGRN
                     SEPYDDRRVCAGNTNCIPICPIQAKWDPTVTLGKALDTGNVTVSYQSVAYNVAVDANN
                     NATGVDYYVWSRDDQGQLQKVSKSVTGKIIVLAAHAIENAKLLLLSNGWKGIANTSDQ
                     VGRNLMDHPLYLTWALAPQPLWGYRGPLATAGIESLRDGEFRKYRAAFRMEIGNEGWN
                     FATGDPYTTALDFVNGTNNSGLNPKNERLGGTALALQLNNVLTRQFRIACMFDQTPLQ
                     ENRVQLDIDPATGKPNNVDGLGIPRPKVEYGFDPYTMEGFRMAAYVCSQVYKQMGATE
                     FTKNNVGGTGDFTYRGVNYHYYGAGHVVGTHRMGPDPYTSVVDANQRSHDVQNMWVVG
                     SGSFPTVCTANPTLTLLALAFKSADSIIATLNS"
     gene            4421..5170
                     /locus_tag="VGD38_15720"
     CDS             4421..5170
                     /locus_tag="VGD38_15720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729529.1"
                     /translation="MYIVDAFWSIIPGNEAKAYAALGALAAQVEQEEPDTWMYLIHTP
                     NLDPGVNTFPMPGPQQVAFVEGFKNRKAFQKHATGPILKEFFAKNGSYFLNMYGPTVP
                     FMMIQTLEMIDGFIRPGADVMNAWQVEARWVMKPGKREQVQRALQGYVNDVRNLEPET
                     LMYTVSVPDVTPQSMSLPPSQVDALVYNSSWTNQQAFFDHGSGPVYQDFLKKHGHLFV
                     QAGPGSTTHPYMTTSVLKRFAGFFRKQAFIK"
     gene            complement(5181..5501)
                     /locus_tag="VGD38_15725"
     CDS             complement(5181..5501)
                     /locus_tag="VGD38_15725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729530.1"
                     /translation="MKGSNFKWQDDASGTPVTTIKVGGSVTWTVTGGTHQLERVAGNA
                     TNGCDQLDASFDSGNLTSGQTVTRTFNKVGTFGYRCGIHLGEPNCKTPPGTGAMPGVI
                     KVVP"
BASE COUNT         1338 a         1794 c         1700 g         1177 t
ORIGIN      
        1 gcggcatgag cggttacatc cgttccggct tcatggcgcc gggagcattc acgccgtcgt
       61 gcattgacgt actgacaagc aacatgacga gcgcgccatc accgaacagt ctactcgtct
      121 ggacgcacat gggcggcaaa gtcaccgaag tcgataagaa ggaaactgcc ttctggcatc
      181 gcgacgcacg attcctttgg gaggtgaaag cgatctggtc ggcgaccgat caaacggtgc
      241 agaacgtcga ctgggcctac aagctcggcg aagaaatggc tccgcactcg atcggcgcct
      301 actgcaatta catcgatccg ctgctgcaca actggcagaa agaattctac ggcgataact
      361 acaagcggct cgtccagatc aagaaggctg tcgatcccga cgagcacttc cgcttccaac
      421 aggcaatcgg atctccgttc aatccgagtc ccgagtatcc gcccaaccag gcgccactct
      481 atcgcacgtt cctcgtttga ttcgaagtgg aggacagatg aagaaaatcg caacgatcat
      541 actgctcact gttgtcgcgg tgacaatggt gatgatgacg cccacaacaa caaccatggc
      601 gcctccggcc gatccggcta tcgttctgag tccgaagatt ccgggtgacg cgcagtttgg
      661 accactgcca cccaatccga cgaacgagca gaagctgtta gccatccaag gcgacttcga
      721 catttattca tggaacacgt tcatcgcgct caactggccg ccgggaccag acggtaacgg
      781 cgatcccaac aagacgatcg gccagaacgg cgacaacgac actgtgtggg aacactatcg
      841 caacgtcgat aacatcttcc tgcccggcgg cgggaagcca acctggaacg gaccggtgag
      901 cgtgccgacg caatgcaagg ccagttacaa accggggatg aagatcgtta cgcaggtcgg
      961 aaagacgccg acagtgttgt ccgctttcag ccagcccttc aacaccggac caatcatcga
     1021 tcagaacggc aactacaccc ggttcgaaat tctcgtgaac aaaccgatgt tcgactacat
     1081 cctgcaaaac acgctctact cgaaggcggg acagaaagtg ttttcgggcg cggtgaagtt
     1141 cccgtgcgga gttctcaacg gtcctgaggg cgcgatcatg gtcaaggccg cgtggaaggt
     1201 aatcaacccc gctgataagg ggcgtttcca cacgcagacc gtcctggttt actcgcctgc
     1261 ttcacaaaat ccgaagtacc cggcgtcgtg cagcacgcag atgatgggac ttgtcggttt
     1321 gcacgtcggc cataagacca actcggccgc gcagtggctc tggtccacgt tcgagcatgt
     1381 cgacaacgtg ccgactgaag ccgacgtcgc gagcggaaag ctgaagtctg tgtacaacta
     1441 ctacgacccg aaatgtcccg cttcgaagtg tccgccaaac cagacgccgc cacggccgtg
     1501 gaatccgacg aaagtcagcg cgttccacag tcagatcgtg cgcatgaaca tgttcaaggg
     1561 caacgagttt gctttcgaga gcgctgcggc acgcaatgct gacgcgttga agctactgct
     1621 cggcgtcaat tccagttctg tctggcagaa ctacgagttg atcagcacga tgtggcccac
     1681 caacacggga cagtgccagg cgactccggg tgatccactc ggaacaccgg cgccgaactt
     1741 tttggccaac accactctcg agacttatat ccagggaatg gttcccaatg tctcgtcgaa
     1801 ctgcatcgag tgccacaaca acgccacgat gacgacgcca gtgccgtccg atttcaccta
     1861 cgtcctgcaa cgggcgcagt agagaaagaa gagacgatta tgactaccat tgcaataaac
     1921 cccgcaccgc cctctgaagc cgtcgtacaa agtttcgcga acatgtcggc ggcactgacg
     1981 ggatttcagg cgagctttat caggccgttt ctcgatccaa caaatctttc cggcatcttc
     2041 tatcaatacg ccgtggccca ggtcggacag ccgatgatgg acgcactgat gagcgcgttc
     2101 gaagcgctca gcactcaaac tccaccgctg actgcgcaac agatcgccga ccaactgctc
     2161 gaagtatcga gcccgactcc gtcgaaccag gcattgcttt gccaggccat tatcgcgatg
     2221 tggtatctcg gttcgtggta tccgccgccg ttccaaacga atggtctgca ccaggtgatc
     2281 tcatcgcagg cttacacgaa gagtctggtt tggaacctgg cccaggcgca tccgatggga
     2341 ttcagtgctt tcacattcgg ttactggagc cagccgccgg gaccgctcac ggacttcggc
     2401 gtcaacactg gaggtggaca atgagcaacg gcaacggcgc ttctccacaa tacgatgccg
     2461 taatcatcgg cgccggtgtt tccggcaacc tgatcgcgaa acagctcggc ctcgccggca
     2521 agaaggtgct catcctcgaa gcgggtcttg ctgtgcccga cagtcgcgaa gagtacatga
     2581 acaacttcta tctcgcgctg gcgaagacgc ccgagtctcc gtatccggcg ttggccggac
     2641 gcacgggcaa ccaggatcat cccgccggta agcttcccga tccggcgaca ctgccgacgc
     2701 cgcgcgcgac agttctcggt ctcggcggcg cgcctgacgt gagttatctc gtgcaggcgc
     2761 agtcgtgggt cgcaactcat ccgaaggacc cggcgccgcc gcagaaccca ccggagcagc
     2821 cgaacggcga tgtccgtggt cttcagtttt ccagcacgtt cgaacgcaac ggcggcggca
     2881 cgtcgtggca ctggctcggc acttcgttgc gcgagctcga gaacgacatc cgcatgtgga
     2941 ccaagtatca gcacgcggtt gattggccgg tgacttacga cgagatgcaa ccgttgtggg
     3001 cgcaagccga gaaagagatc ggcgtcgctg cgagtgtggt ccaacaggaa ccgcttgaag
     3061 tcgtcggttt ggaatatccg ccgggctatc aatatccgat gggcccgatc ccgacgagca
     3121 tcgtggacca aaccgtcagc cagggcgtct ccggactaca ggtgcccggc acgttgccag
     3181 acacgcccgg cggttctgat ccgcagatgt acgacgtgtt cgtcacaccg acacctgcgg
     3241 gacgcaactc cgagccgtac gacgatcgac gcgtctgcgc cggcaacacg aactgcattc
     3301 cgatctgtcc gattcaagcg aagtgggatc cgaccgtaac actcggcaaa gcgctcgaca
     3361 ccggtaacgt gaccgtgagt tatcaatcag tcgcgtacaa cgtcgccgtc gatgcgaaca
     3421 acaacgcgac gggcgtcgat tactacgtgt ggtcgcgcga cgatcagggc cagttgcaga
     3481 aggtgtcgaa atcagtcacg ggcaagatca tcgtgctcgc cgcccacgcg atcgagaacg
     3541 cgaagctgct gctgttgtcg aacggctgga aaggcatcgc caacacgagc gatcaggtgg
     3601 gacgcaatct catggaccac ccgctgtacc tgacgtgggc gctggcgccg caaccgctct
     3661 ggggctatcg cggtccactc gcgacggcgg gtatcgagtc gctgcgtgat ggcgagtttc
     3721 gtaagtatcg cgcggcgttt cgcatggaga tcggaaacga aggctggaac ttcgcgaccg
     3781 gcgatcccta caccacggcg ctcgactttg ttaacggcac gaacaactca ggtcttaacc
     3841 ctaagaacga gcggctcggt ggtacggcgc tggcgttgca gttgaacaac gtgctcacgc
     3901 ggcagtttcg catcgcttgc atgttcgatc agacgccgct gcaggagaac cgcgtccaac
     3961 tcgatatcga tccggcaacc ggcaagccaa acaacgtgga cggtctcggc attccgcggc
     4021 cgaaggtcga gtacggattc gatccttaca cgatggaagg ttttcgcatg gccgcgtacg
     4081 tctgctcgca ggtttacaag caaatgggcg cgacggagtt tacgaagaac aacgtcggcg
     4141 gtacgggtga cttcacgtat cgcggcgtga actatcacta ctacggcgcg ggccacgtcg
     4201 tcggcacgca tcgcatgggt cccgatccgt acacgtccgt ggtcgacgca aaccagcgtt
     4261 cgcacgacgt gcagaacatg tgggtggttg gaagcggaag tttcccgacc gtctgcaccg
     4321 caaacccgac actgacgctg ttggcgctgg cgttcaaatc agcagacagc atcatcgcga
     4381 ctctcaactc gtaacagccc tcaaaggaga aacccggttc atgtacatcg tcgacgcgtt
     4441 ttggtccatc attcccggca atgaagcaaa agcctatgcg gcgctcggcg cgctcgcggc
     4501 gcaggtcgaa caggaagagc ccgacacgtg gatgtacctg atccacactc cgaatctcga
     4561 tcccggcgtc aacacgtttc cgatgccggg cccgcagcag gtcgccttcg tcgagggctt
     4621 caaaaatcgc aaggcgtttc agaagcacgc gacaggacca atcttgaaag agttcttcgc
     4681 gaagaatggt tcgtactttc tgaacatgta tggaccaact gtgcctttca tgatgatcca
     4741 gacgctggaa atgatcgatg ggtttattcg tcccggtgcg gacgtgatga acgcgtggca
     4801 agtcgaggcg cgttgggtga tgaaaccggg taaacgcgag caggtgcagc gggcgctgca
     4861 gggttacgtg aacgacgtgc gtaacctgga gcccgagaca ttgatgtaca cggtgagtgt
     4921 ccccgacgtg acgccgcagt cgatgtctct tccgccgtca caagtggacg cgctcgtcta
     4981 caactcctcc tggaccaacc agcaggcctt cttcgatcac ggcagcggtc ccgtctatca
     5041 ggacttcctg aaaaaacacg gccacctctt cgtccaagcg ggccccggct cgacgacaca
     5101 cccctacatg accacctccg tcctgaagcg ctttgccggc ttcttcagga aacaggcgtt
     5161 tattaagtga tgagttaaga ctacggcacg accttaataa cgcctggcat cgctccggtt
     5221 cccggcggcg ttttgcaatt cggctcgccg aggtgaatgc cacagcggta accgaacgtc
     5281 ccgactttat tgaaagtccg ggttaccgtc tgtccagacg ttaaattgcc ggagtcaaac
     5341 gaagcgtcga gctgatcgca gccgtttgtc gcgtttccag caacgcgttc caattggtgc
     5401 gtgccgccgg tgacggtcca ggtgacgctt cctccaacct tgatcgttgt caccggtgta
     5461 ccactcgcat catcctgcca cttgaagttc gaccctttca cactagcagt cgccggcgcc
     5521 gcggggccgg gtgacggcga acccgccgag ggcgacggag acgcagcggt cggcgtaggt
     5581 gttgcagcta cggtcggtgt ggttgaagcc gttgggctcg ggctcgcatt acccggagca
     5641 ggaccgggcg aggtgcaaga ggttagaccc aatgtcagca gagccgttgt gagtactaat
     5701 tcgcgggttt tcataatgat cctccttcgt tgcggttgtg agcagacagg atctgttagt
     5761 tttactctct gctatatatg cgatttctcg gaggttcgtt tcgaaaaaca ttatttgatt
     5821 gactttcccg cccaacctaa atattctgcc gccgctttga caggctgaag ttctcacgag
     5881 atcccgctgg cacccgttta ttttttcagc cctcaaagca ctgacgatta acgatcccag
     5941 gtcgtttcca gcctctgtgc tcgctgaaaa cttcgtgctt gcttgaaaca aaaatccaga
     6001 accaaccat
//
LOCUS       DASWTX010001029         3007 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_185731, whole genome shotgun sequence.
ACCESSION   DASWTX010001029 DASWTX010000000
VERSION     DASWTX010001029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3007
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185731"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..679
                     /locus_tag="VGD38_15730"
     CDS             <1..679
                     /locus_tag="VGD38_15730"
                     /inference="COORDINATES: protein motif:HMM:NF014658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="menaquinone biosynthesis protein"
                     /protein_id="HEY0729531.1"
                     /translation="CAELLAHEKVDGALIPVIEYQRIAGGSLVPDVCVGSQKEVLSVV
                     LVSKDTELDQVRSVALDESSRTSATLVKIIFREFLDVEPEWTVRTPNLAEMLEKNDAA
                     LIIGDPGMTFPRTGLKIWDMANVWRTYTGLGFVFAMWMIADRSVERARRVDFAGARDE
                     GVAHIEEIVAEYEKKIPMPVSDLRKYLTENIVFSVGESMKRGLELYFELAFKHGLIER
                     VKPLRFV"
     gene            704..1813
                     /gene="mqnC"
                     /locus_tag="VGD38_15735"
     CDS             704..1813
                     /gene="mqnC"
                     /locus_tag="VGD38_15735"
                     /EC_number="1.21.98.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR03699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic dehypoxanthinyl futalosine synthase"
                     /protein_id="HEY0729532.1"
                     /translation="MTTNGIQPILDRVLAGERMSVDECRTLLQSHDIARMGVAADEIR
                     ARRHPENIVTYIIDRNINYTNVCNVVCTFCAFYRRPGAPDTYVRTFDEICEKIDETIA
                     LGGTGVLMQGGLHPDFGIEWYEDLLRSLRAKYPEFQLHCFSPPEIHNIHLISKLDYET
                     IMARLKEAGLYSLPGGGAEILDDEVRKRVATKCTTDEWLAVMRAVHRVGLRSTATMMF
                     GIGDTIEHRLRHLQRIRDLQDETGGFTAFIPWTFQRENTALGRKIKDEPTGVDYLKML
                     AVSRLFLDNIENFQSSWLTQGLRLGQVALRFGANDMGSIMIEENVVSAAGASNRADEK
                     MLRYLISEAGFTPQQRDILYKAVTRSPQNQIALGV"
     gene            complement(1776..>3007)
                     /locus_tag="VGD38_15740"
     CDS             complement(1776..>3007)
                     /locus_tag="VGD38_15740"
                     /inference="COORDINATES: protein motif:HMM:TIGR00757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HEY0729533.1"
                     /translation="QPAITDLLSEGQEILVQIAKEPIAKKGARITSHIALPGRFLVYM
                     PTVEHVGVSRKIESDNERHRLRKLIQTIRAEEDVPSGGFIVRTAGVGIHEKELREDVR
                     YLVRTWLDIRASAEKSKAPALVHRDLDLVQRLLRDQLSDDFESIRVDSEEEYQAIVEF
                     VNRIQPKLVRKVKLYTKDQPILEAYGVQAEIDKAIKPRVWLRSGGYLVINQTEALVAI
                     DVNTGKFVGRGSGRLEDTITRTNMEAVEEIVRQIRLRDLGGIIVLDLIDMEERRNRQK
                     VMQALQDALRNDKSPTKVLSFNDFGLVIMTRKRVKQSLERTLCSPCPYCQGAGLVKSP
                     QTICYELLEGARQLAKDLNGDGKSKQITLRINPDVAKALRTSERDVMIEIEDYLGPID
                     ITSDPTIHQEQFDFAVI"
BASE COUNT          614 a          867 c          871 g          655 t
ORIGIN      
        1 ttgcgccgag ttgctggccc acgagaaggt ggatggagcg ctgataccgg ttatcgaata
       61 tcaacggatt gccggcggat cgcttgttcc cgatgtttgc gtcggctcgc aaaaggaagt
      121 gctgagcgtc gtgctcgtct ccaaagatac ggagctggac caggttcgca gcgtcgcgct
      181 cgacgagtcg tcacgcactt cagcgactct cgttaagatt atctttcgtg agtttctgga
      241 cgtggaaccg gagtggaccg tgcgtacgcc gaatctcgca gagatgctgg agaagaacga
      301 cgccgcgctg atcatcggtg atccgggtat gacgtttccg cgcacgggtt tgaaaatctg
      361 ggacatggca aacgtctgga ggacttacac gggattgggg ttcgtgtttg ccatgtggat
      421 gattgccgat cggagcgtcg agagagcgcg gcgcgttgat ttcgcgggcg cgcgtgacga
      481 gggtgtggca cacatcgaag agattgttgc ggagtatgaa aagaagatcc caatgccggt
      541 gagcgacctg cgcaagtacc tgaccgagaa cattgtgttt agcgttggcg aatcgatgaa
      601 acgcgggctg gagctctatt tcgagctcgc cttcaagcac ggattgatag aaagagtgaa
      661 accactgcgg tttgtttgac gtttttgata agctacgaag cgaatgacta cgaacggtat
      721 tcaacccatt cttgaccgcg tgctcgctgg cgagcgcatg tccgttgacg agtgcaggac
      781 cttgctccag tcgcacgata tcgcgcgcat gggcgttgcc gccgatgaaa tacgcgcgcg
      841 acgccacccg gaaaacatcg tcacgtacat catcgatcgc aacatcaact acaccaacgt
      901 ctgcaacgtc gtctgcacct tctgcgcgtt ctatcgccgt cccggcgcgc ccgacactta
      961 cgtgcgcacg ttcgacgaga tctgcgaaaa gatcgacgag acgatcgccc tcggcggcac
     1021 cggcgtgctg atgcagggcg gactgcatcc cgacttcggt atcgagtggt acgaagacct
     1081 gctgcgctca ctgcgcgcaa agtatcccga gtttcagttg cactgcttct cgccgcccga
     1141 gattcacaac attcacctga tctcgaaact cgactacgaa acgatcatgg cgcggctcaa
     1201 agaagcggga ctctacagcc tgcccggcgg cggcgctgag attctcgacg acgaggtgcg
     1261 caaacgcgtc gccacgaagt gtacgactga tgagtggctc gcggtgatgc gtgcggtcca
     1321 tcgcgtcgga ctgcggtcga ccgccacgat gatgtttggc atcggcgaca cgatcgaaca
     1381 tcgtctccgt cacttgcaac gcattcgcga tctgcaggac gaaaccggcg gtttcactgc
     1441 gttcatcccg tggacttttc aacgcgagaa cacggcgctc ggacgcaaga tcaaagacga
     1501 accgactggc gtggattatt tgaagatgct ggcggtgtcg cggctgttcc tcgacaacat
     1561 cgaaaacttt cagtcgtcgt ggctgacgca ggggttgcgt ctcggacagg tcgcgttgcg
     1621 cttcggcgcg aacgacatgg gttcgatcat gatcgaggag aacgtggtct cagcggcggg
     1681 tgcgagtaat cgcgctgatg agaagatgct tcgctacctg attagcgagg ccggtttcac
     1741 tccccaacag cgcgatatcc tctacaaggc agtgactaga tcaccgcaaa atcaaattgc
     1801 tcttggtgta tagtcggatc gctcgtgatg tcgattggtc caaggtagtc ttcgatctcg
     1861 atcatcacat cgcgttcgct cgtgcgcagc gctttcgcca catcgggatt gatgcgcagc
     1921 gttatctgct tgctcttgcc gtcgccgttc aggtccttgg ctaactgccg cgcgccttcc
     1981 aacaactcgt aacagatcgt ctgcggcgac ttcaccaagc ccgcgccctg gcaatacgga
     2041 cacggcgaac agagcgttcg ttccagcgat tgcttcacgc gcttgcgcgt catgatcacg
     2101 aggccgaagt cgttgaacga aagcaccttc gtcggcgact tgtcgttacg caacgcatcc
     2161 tgcaacgcct gcatgacctt ctgacggttg cggcgctctt ccatgtcgat caagtcgagc
     2221 acgatgatgc cgccgaggtc gcgcaggcga atctgcctga cgatctcttc cacggcttcc
     2281 atgttcgttc gtgtaatcgt gtcttcaaga cggccgctgc cacgtccgac aaacttgccg
     2341 gtgttgacgt cgatcgccac gagcgcttca gtctggttaa tgacgagata accaccagac
     2401 ctcaaccaca cacgcggctt gatcgcttta tcgatctcgg cctgcacgcc gtacgcttcg
     2461 aggatcggct ggtccttcgt gtagagcttc actttccgca ccagcttcgg ctgaatgcga
     2521 ttcacgaact cgacgattgc ctggtattcc tcttcggagt cgacgcggat cgattcgaag
     2581 tcgtccgaca actgatcgcg taacagacgt tgcacgagat cgaggtcgcg atggaccagc
     2641 gccggagctt tcgacttctc cgccgaagca cgaatgtcga gccacgtgcg cacgagataa
     2701 cgcacgtctt cccgcaactc tttctcatgg atgccgacgc ccgccgtgcg aacgatgaaa
     2761 ccgccggacg gcacgtcctc ttccgcgcgg atcgtttgaa tcagcttgcg cagccggtga
     2821 cgttcattgt ctgactcgat cttgcgcgaa acgccgacgt gttcgacagt cggcatgtaa
     2881 accagaaaac ggcccggcaa cgcgatgtgc gacgtgatgc gcgcgccctt cttcgcgatc
     2941 ggctctttcg cgatctggac caggatctcc tgcccttcgc tcaacagatc agtgatcgcg
     3001 ggttgat
//
LOCUS       DASWTX010001030         3373 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_169300, whole genome shotgun sequence.
ACCESSION   DASWTX010001030 DASWTX010000000
VERSION     DASWTX010001030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3373)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3373)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3373
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169300"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..198
                     /locus_tag="VGD38_15745"
     CDS             <1..198
                     /locus_tag="VGD38_15745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729534.1"
                     /translation="VNLDMRFTKRFDIGERFKVHALFEFFNLLNRQNPAAVETVAPTT
                     FGTLKQILPGREGQIGLRIEF"
     gene            188..922
                     /locus_tag="VGD38_15750"
     CDS             188..922
                     /locus_tag="VGD38_15750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729535.1"
                     /translation="MSSEISIRQIESFSELRAVEEMQKEVWGVPDLDVVPLTHLIAAK
                     AAGGVLLGAFDGQTLVGFVYGFVAEEDGQMAHHSHMLAVKHAYRNFNLGYKLKLAQRE
                     EVLAQGINLITWTFDPLQSLNAYFNFTKLGVISDRYVINFYGEEATSFLHQTGTDRFW
                     VKWLLTSDRVVQRLNASKPILEDPTDKLLIEIPSDINSLVNESPEAAYEWRLRTRRQF
                     TEAIEAGYVVRDFYREAGRGVYILGK"
     gene            919..1935
                     /locus_tag="VGD38_15755"
     CDS             919..1935
                     /locus_tag="VGD38_15755"
                     /inference="COORDINATES: protein motif:HMM:NF013586.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HEY0729536.1"
                     /translation="MRTATKQLALILSLVLLAQAGQSPRKPAPAPARWLGLIGEYGTD
                     TEILYILEKDGKLCASFKRAQPEPLREISRNVFAYTFGQLAGQNVVFTRDRTGRATQV
                     TILGAALQRRRIEPEAGANQLRVPPVRPVPELLKEALAAKPPAETRDFLKSDLVELIK
                     LDPTIRLDVRYATTNNLFGTVFYSEPRAFLQRPAAEALVRVSSKLKSQGYGLLVHDAY
                     RPWYVTKVFWDATPADKKLFVADPSKGSRHNRGCAVDITLYELQTKRVVQMVSTYDET
                     TDRAYPNYPGGTSLQRWHRDLLRAAMEAEGFTVYEAEWWHFDYKDWQKYPIQNIPFNQ
                     ISNK"
     gene            1941..>3373
                     /locus_tag="VGD38_15760"
     CDS             1941..>3373
                     /locus_tag="VGD38_15760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729537.1"
                     /translation="MKIQRLVFTLAVLVCLSVPVFAQGTRLLRHPTVSRDSIAFEYGG
                     DLWVVSRNGGQARRVTSTQGVELDPFFSPDGSQIAYTSTVAGNTDVYVVPTAGGDPKR
                     LTFHPTLDRVRGWTPDGRGVVFASTRTSAPQQAYWQLWTISIDGGFPTPMPMPRAFSV
                     AYSPDGKKLAYEEITTAFVPPWYELSQWRHYRGGRTRPVRLLNLADNSVEKLPWNNSN
                     DSLPMWIGNTIYFLSDRNHTTNLFAYNPGSKQVTQLTRHDDFDIMTASAGADAIVYEQ
                     AGYIHLVEASSGKARRLNIEVAGDFPWARPQFKKVVSMIRNSSLSPTGIRAVFEARGE
                     IFTVPTEKGDYRNLTQSSGAHDRSPAWSPDGSQLAWLSDASGEYQLMIGDPLGVTPAK
                     SIPLPSTAFYSAPAWSPDGSQLLLQDNHRNLWLVELATGKAAKVDTDNYPDPFRSFDA
                     TWAPDSKWIAYSKNLPSHLRAIFVYSLA"
BASE COUNT          718 a         1026 c          933 g          696 t
ORIGIN      
        1 gtcaatctgg acatgcgctt cacaaagcgg tttgatatag gcgaacgatt caaagtgcac
       61 gcgctgttcg agttcttcaa cttgttgaat cgccagaatc cggcggcggt cgagacggtg
      121 gccccgacga ccttcggcac gttgaagcaa attctacccg gacgtgaagg acaaatcgga
      181 ttacgaattg agttctgaga tttccattcg ccagattgag agtttcagcg aactgcgggc
      241 ggttgaggag atgcaaaaag aggtttgggg tgtccctgac ctcgacgtcg ttccactaac
      301 gcatctcatc gctgcaaaag ccgcgggcgg cgtactgctc ggcgctttcg atggccagac
      361 actcgtcggc ttcgtctacg gtttcgtggc tgaagaagac ggccagatgg cccatcactc
      421 gcacatgctc gcggtcaagc acgcgtatcg caatttcaat ctcggttaca aactgaagct
      481 cgcgcaacgt gaagaagtgc tcgcgcaagg catcaacctg atcacgtgga cgttcgatcc
      541 gttgcagagt ctgaacgcgt atttcaactt cactaagctc ggcgtgattt ccgatcgtta
      601 tgtgatcaat ttctacggtg aagaggcgac gagctttctg caccagaccg gcaccgatcg
      661 tttttgggtg aagtggttgt tgacgagcga ccgcgtggtc caacggttga acgcatcgaa
      721 accgattctg gaagacccga cggacaaact gctgattgaa atccccagcg atatcaacag
      781 cctcgtgaac gaaagtcctg aagcagctta cgaatggcgt ctgcgcacgc ggcgccagtt
      841 cactgaagcg atcgaagccg gctacgtcgt cagggacttt tatcgcgagg ccggtagggg
      901 tgtttacatt ctaggcaaat gagaaccgca acaaaacaac ttgccctcat cctttcgctg
      961 gtcctactcg cgcaagcggg tcaatccccc cggaaaccgg ctcccgcgcc ggcacgctgg
     1021 ctcgggttga tcggcgagta cgggacggac acagagatcc tttacatcct cgaaaaagac
     1081 ggaaagcttt gcgcttcgtt caagcgcgcc caacctgaac cacttcggga gatttcgaga
     1141 aatgtttttg cctacacgtt cggacaactt gctggtcaga atgttgtatt cacgcgcgat
     1201 cgcacggggc gcgcaacgca agtcacgata cttggcgcag cgcttcagcg tcgccgcatc
     1261 gaacccgaag ccggcgcaaa ccaactgcgt gttccaccgg ttcggcccgt ccctgaattg
     1321 ctcaaggaag ctctcgctgc gaaaccaccc gcagagaccc gcgattttct taagtctgat
     1381 ctggtcgagc tgatcaaact cgatccgacc attcgtctcg acgttcgtta cgcaaccacc
     1441 aacaacctgt tcggcaccgt cttctactcc gagccgcgcg cgttcctgca gcgcccggcc
     1501 gccgaagcgc tcgtgcgcgt gagcagcaag ttgaaatcgc agggctatgg gctgctggtc
     1561 cacgacgctt atcgcccgtg gtacgtgacg aaagttttct gggacgcgac gcctgccgac
     1621 aagaaactgt tcgtcgccga tccctcgaaa ggctcgcgtc acaatcgcgg ctgcgcggtc
     1681 gacatcacgc tttacgaatt gcagacgaag cgcgtcgttc agatggtcag cacctacgac
     1741 gagacgaccg atcgcgcgta tcccaattat ccgggcggca cttccctgca acgctggcat
     1801 cgcgacctgc tgcgcgccgc gatggaagcc gaaggcttta ctgtttacga agcggagtgg
     1861 tggcacttcg attacaaaga ctggcagaag tatccgatcc aaaacatccc ttttaaccag
     1921 atctccaaca agtgaacgtt atgaaaattc aaagactcgt ctttacgctc gcagtactcg
     1981 tctgtctttc agtgccggtg ttcgcgcagg gcacgcgtct cttgcgacat ccgacagtca
     2041 gccgcgactc gatcgcgttc gagtacggag gcgatttgtg ggtcgtgtcg cgcaacggcg
     2101 gacaagcacg gcgcgtaact tccacgcagg gcgtcgaact cgatccattc ttctcgccgg
     2161 acggttcgca gatcgcttac acctcgacgg tcgcgggcaa caccgacgtt tacgtggtgc
     2221 ccaccgcggg cggcgatccg aagcgtttga cgtttcatcc gacactcgat cgcgtgcgcg
     2281 gctggacgcc cgacggacgc ggcgtggtct tcgcttcaac acgcacgagc gcgccgcagc
     2341 aggcttactg gcaattgtgg accatctcga tcgacggtgg ctttcccaca ccgatgccga
     2401 tgccgcgcgc gttcagcgtc gcctactcgc ctgacggcaa gaagctcgct tacgaagaga
     2461 tcacgactgc tttcgttcca ccgtggtacg agctcagcca gtggcgccac taccgcggcg
     2521 gccgcacgcg tccggtcagg cttttgaacc tcgccgacaa ttcggtcgaa aagttgccgt
     2581 ggaacaacag taacgactcg ctgccgatgt ggatcggcaa cacgatctac tttctttcgg
     2641 atcgcaatca cacgacgaac ctcttcgcct acaacccggg cagcaaacaa gtgacgcaac
     2701 tcacgcgtca cgatgacttc gacatcatga ccgcttccgc gggcgcggac gcgatcgtgt
     2761 acgaacaggc gggctacatt catcttgtcg aggcatccag cggcaaagcg cgccgtctca
     2821 acatcgaggt cgcgggtgac tttccctggg cgcgtccaca gttcaagaaa gtcgtcagca
     2881 tgatccgcaa ctcgtcgctt tcgccgacgg gaattcgcgc ggtgttcgaa gcgcgcggcg
     2941 agatcttcac ggtgccaacc gagaagggcg actatcgaaa cctgacgcaa tcatccgggg
     3001 cgcacgatcg cagtcccgca tggtcgcccg atggttcaca actcgcgtgg ctctccgatg
     3061 ccagcggcga atatcagttg atgatcggag atccactcgg cgtcacgcct gcgaagtcaa
     3121 tccccttgcc ctcgacggct ttctattcag cgcccgcgtg gtcgccggat ggttcgcaat
     3181 tgctgcttca ggacaatcat cgcaacctct ggctcgtgga gctcgcaaca ggcaaggctg
     3241 caaaggtcga caccgacaac tatcccgatc cgtttcgttc gttcgacgct acgtgggcgc
     3301 ccgattcgaa gtggatcgcc tattccaaaa accttcccag ccacctgcgc gcgatctttg
     3361 tctactcgct cgc
//
LOCUS       DASWTX010001031         2856 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_231890, whole genome shotgun sequence.
ACCESSION   DASWTX010001031 DASWTX010000000
VERSION     DASWTX010001031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2856)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2856)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2856
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231890"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1692)
                     /locus_tag="VGD38_15765"
     CDS             complement(<1..1692)
                     /locus_tag="VGD38_15765"
                     /inference="COORDINATES: protein motif:HMM:NF014896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY0729538.1"
                     /translation="MKIRLRHNYFTFAFFALVLSIAAVAPFLTRAAADTKNDTNKSKI
                     TYPETKKVEVVDDYFGTKVPDPYRWLEDETSAETKAWIENQNRVTFGYLEKIPYREKL
                     KARLTELFNYPRISAPFRRGDTYFFTKNDGLQNQSVYYIQKGVNGTPEVFLDPNKFSA
                     DGTSVLSTFSLSKDGKYLAYGISTGGSDWITMNVMEVGTKQKLSDELKWVKVSGVSWQ
                     GDGFYYSRYPAPEKGKELSTKNEWHAVYFHKVGTPQSQDVLIYDDKQNALRFHNVTTT
                     EDERFALLTISDRAKGKKGNSLFYKDLSKPDAKFASIVPEVGDDNFGVIDNVGDKFLL
                     RTNRKAPNGRVVLVDPQNPAEENWKDVLPERPEPLQSVGTAGGKLFASWRKDVATRAY
                     VFSLDGKLENEIVLPGVGTAGGFGGLNDDKHVFYNFTSFNFPTTIYKYDIATKKSTVF
                     RTIDIPGFKPENYETKQIFYNSKDGTRVPMFLVHKKGLKLDGNNPTVLYGYGGFNVVT
                     APNFSSLRLAMLEQGVVYASANMRGGGEYGEKWHEAGTKLKKQNVFDDFIAAAEWL"
     gene            1956..>2856
                     /locus_tag="VGD38_15770"
     CDS             1956..>2856
                     /locus_tag="VGD38_15770"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY0729539.1"
                     /translation="MSTSAIAPRKPEIKTALPGPNAKKIIEADAKFVNPAYPRPEYKL
                     VAERASGVWVEDVDGNLFLDCNAGVAVCSTGHCHPEVVQAIQKQAAELIHICGTDYYY
                     RQMPDLAEKLDAIVPVQSPTKTHFANSGTEAVETALKLAMHATGREKFIAFFNSFHGR
                     TLGSLSLTSSTAAQRKGVNRPALDVVHVPYPNEFRNPFSAADCGDGGAGQGALNWIEE
                     RLFKTTTPPEEVAGIVVEAVQGEGGYVPSPKGFLQGLRRICDEHGIMLIIDEVQSGMG
                     RTGKMFASEHYGVKADIVCIAKGI"
BASE COUNT          583 a          805 c          809 g          659 t
ORIGIN      
        1 cagccactca gccgccgcaa tgaagtcgtc aaacacgttc tgcttcttta gcttcgtgcc
       61 ggcctcgtgc cacttctcgc cgtactcgcc gccgccacgc atgttcgcgg aagcgtagac
      121 aacgccctgt tcgagcatcg ccaaacgcag cgaactgaag ttcggcgcag tcacgacgtt
      181 gaaaccaccg tagccgtaaa gcacggtcgg attgttgccg tcgagtttta ggcctttttt
      241 atggaccagg aacatcggca cgcgcgtacc gtctttgctg ttgtagaaga tctgcttggt
      301 ttcgtagttc tcgggtttga atccgggaat gtcgatcgtg cggaagaccg tcgatttctt
      361 ggtagcgatg tcgtacttgt agatcgtcgt cgggaagttg aacgacgtga agttatagaa
      421 gacgtgcttg tcgtcgttca gaccgccaaa gccgccggcg gttccgacgc ccggcaacac
      481 gatctcgttt tccagcttgc cgtcgagact gaacacgtaa gcgcgcgtcg cgacgtcctt
      541 gcgccacgag gcgaacagtt tgccaccagc cgtgccgacg ctctgcagcg gctcgggtcg
      601 ttcgggcaac acgtctttcc agttctcttc ggccgggttc tgcggatcga ccagcaccac
      661 gcgtccgttc ggcgccttgc ggttcgtgcg gagcaggaac ttgtcgccca cgttgtcgat
      721 cacgccgaag ttgtcatcgc caacctcggg gacgatcgac gcaaacttcg catcgggctt
      781 cgagagatct ttgtagaaga gtgaatttcc cttcttgcct ttcgcgcgat ccgagatcgt
      841 cagcagcgca aagcgctcgt cttccgtggt ggtcacgtta tgaaagcgca acgcattctg
      901 cttgtcgtcg tagatcagaa cgtcctgcga ttgcggcgtg ccaaccttgt ggaaatagac
      961 cgcgtgccat tcattcttcg tcgagagctc tttgcccttc tccggcgccg gataacggct
     1021 gtagtaaaaa ccgtcgccct gccacgacac gcccgagacc tttacccact tcagctcgtc
     1081 gctgagcttc tgcttggtgc cgacttccat cacgttcatc gtgatccagt cagaaccgcc
     1141 tgtggagatg ccatacgcga gatacttgcc gtcctttgac agcgagaacg tgctcaacac
     1201 tgacgtgccg tcagcggaaa acttgttcgg atcgagaaag acttccggcg tgccgttcac
     1261 gcctttttga atgtagtaga cgctctggtt ctgcaagccg tcgttcttgg tgaagaagta
     1321 agtgtcacca cgacgaaacg gcgcggagat gcgcggatag ttgaagagtt ccgtcagccg
     1381 cgctttgagc ttttcgcgat acgggatctt ttcgagataa ccaaacgtga cgcggttctg
     1441 gttctcgatc caggcttttg tctcggccga agtctcgtct tcgagccagc gatacgggtc
     1501 cgggactttg gtgccgaagt agtcgtcgac gacctcgacc ttcttcgttt ccggataagt
     1561 tattttggac ttgtttgtat cgttcttcgt gtcggcagcc gctctggtca ggaacggcgc
     1621 gaccgcggca atcgacagaa cgagcgcgaa gaatgcaaag gtaaagtaat tgtgtctcag
     1681 acggatcttc attgttctta tctccgcagg cagggactag atttggccgc ttactttatc
     1741 aatctgtcct tgtccgaggc aaaccgcgct gctagaatcg cgaacgtatg ttgaaccctc
     1801 aaccacttca ttaccgcccg cttgagtcgc gcgcgaatct gttcgccgac tagtctcctg
     1861 tttcgttaat cgctgccctg ataacgtctg aaaacctcgg ttttcagtct cgcaatcgtc
     1921 ttttggacgt ctttctagaa gagggagaaa tgaacatgtc gaccagcgca atcgcaccac
     1981 gcaaacccga gatcaagacc gcactacccg gcccgaacgc aaagaagatc attgaagccg
     2041 atgcaaaatt tgttaacccg gcctatcccc ggcctgagta caagctcgtc gccgagcgtg
     2101 cgagcggcgt ctgggttgag gacgttgacg gcaatctctt tctggattgc aacgcgggcg
     2161 tcgcggtctg ttccaccgga cactgtcatc cggaagttgt gcaggcgata cagaagcagg
     2221 cagcggaact gattcatata tgcggcactg actattacta ccgccagatg cccgacctcg
     2281 cggaaaaact cgacgcgatt gtgccggtgc agtcgccgac gaagacgcac ttcgcgaaca
     2341 gcggtactga agcagtcgag actgctttga aactcgcgat gcacgcgact ggccgcgaga
     2401 agttcatcgc gttcttcaac agttttcacg gacgcacgct cggatcgctc tcgttgacat
     2461 catcgacggc cgcacagcgc aagggtgtca atcgcccggc cctcgacgtg gtccacgtgc
     2521 cgtatccgaa tgagtttcgc aatccgttca gcgccgctga ctgcggcgat ggcggcgccg
     2581 ggcagggcgc tttgaattgg attgaagaac ggctcttcaa aacaaccacg ccgccggaag
     2641 aggttgcggg aatcgtggtt gaagccgtgc agggtgaagg tgggtacgtg ccgtcgccaa
     2701 aaggttttct gcagggactg cggcgcatct gcgacgagca cgggatcatg ttgattatcg
     2761 acgaagtgca gagcggcatg ggccgtacgg gcaagatgtt cgcgtccgag cattacggtg
     2821 tgaaggccga cattgtttgc atcgcgaaag gtatag
//
LOCUS       DASWTX010001032         2717 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_345064, whole genome shotgun sequence.
ACCESSION   DASWTX010001032 DASWTX010000000
VERSION     DASWTX010001032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2717)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2717)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2717
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345064"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..339
                     /locus_tag="VGD38_15775"
     CDS             <1..339
                     /locus_tag="VGD38_15775"
                     /inference="COORDINATES: protein motif:HMM:NF014186.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0032977 - membrane insertase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YidC/Oxa1 family membrane protein insertase"
                     /protein_id="HEY0729540.1"
                     /translation="DLSAAEPYLIHILPILMTGTMVVLQLVTPAPSADPLQRKMMAIG
                     MPLFMLYILWSAPSGLVLYWLVGNIVGFTQQFFINRWTKTDDDEVETPPPAKKVPPRK
                     KQVDSATART"
     gene            348..818
                     /locus_tag="VGD38_15780"
     CDS             348..818
                     /locus_tag="VGD38_15780"
                     /inference="COORDINATES: protein motif:HMM:NF013583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="R3H domain-containing nucleic acid-binding
                     protein"
                     /protein_id="HEY0729541.1"
                     /translation="MTEVTQQAAQYLEDVFDATGLQLRVTVKQGVAGEVLDIEGKDSE
                     LLQAQTGELLEALQHLINQVFSRNLAGSARLVCDVNGFRATREAELQTMANFAANRVR
                     QTGMAFTFEPMSANERRIIHLTLADSEDLSTESIGEGSERKLRIVRKSSAPRNS"
     gene            862..2202
                     /gene="mnmE"
                     /locus_tag="VGD38_15785"
     CDS             862..2202
                     /gene="mnmE"
                     /locus_tag="VGD38_15785"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF003661.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEY0729542.1"
                     /translation="MSTVVALSTPRGRGALAVVRLSGPDAIAIAHHMARVDSFEPRCA
                     TLTRLRAGDEELDQVLLTCFPAPHSLTGEDVVEISCHGSPAIVRRIIDATLESGATLA
                     GPGEFTLRALSNGKINLAQAEAIRDLIAAQTDAAVKQAARQLNGELSKTLDPFTEKLV
                     HVIVLLESALEFVEDDLPATQVDQVEEILSSVIAGVERLSRSYSAGRLLQDGARIAIT
                     GRPNVGKSSLFNGLVRSERAIVTDVPGTTRDTLSEAIDIGGVPVVLTDTAGLRETSDN
                     IESLGIERTHRAMGDADLVLLVLDGSSQLGPEDEQLLKQTSDARRLVVMNKSDLPSFQ
                     PLARCVEDDEPINVSARTGEGLSGLHSAILAKLNSAGAENGSLLITNARHYDLLCRAK
                     RELESAHACFRDRHSEELVLAPLHNALKLLGQITGETTTEDILSEIFATFCIGK"
     gene            2206..>2717
                     /locus_tag="VGD38_15790"
     CDS             2206..>2717
                     /locus_tag="VGD38_15790"
                     /inference="COORDINATES: protein motif:HMM:NF013314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY0729543.1"
                     /translation="MFDERFDVIVIGAGHAGCEAASAAARLGAETGLITLNLDLVGQM
                     SCNPAIGGIAKGHLVREIDALGGIMGRVIDRTGIQFRLLNRSRGPAEQSPRAQADRLR
                     YRSEMRRTLEATSNLHLRQGKVVDFVLQNGKLVGVELEDGRRFGATAVVVATGTFLNG
                     LIHTGRRTYRG"
BASE COUNT          584 a          658 c          863 g          612 t
ORIGIN      
        1 gatctctctg ccgccgaacc gtatctcatt cacatcctgc cgatcctgat gaccggaacg
       61 atggtggtgt tacaattggt gaccccggca ccgtcggcgg atccattgca acgaaaaatg
      121 atggcgatcg gcatgccgct cttcatgctt tatatcttgt ggagcgcgcc gtcgggtttg
      181 gttttatatt ggctggtggg taacatcgtc ggcttcacgc aacagttctt catcaatcgt
      241 tggaccaaga cggacgatga cgaagtcgaa acaccgccgc cggcgaagaa ggtaccgccg
      301 cgaaaaaagc aggttgattc agcgacggcg cggacgtagg aagagtgatg actgaagtta
      361 ctcaacaagc agcgcagtat ctcgaagacg tgtttgacgc gaccggtttg caactgcgcg
      421 tgacggtgaa gcagggcgtt gccggcgaag tgctggacat cgaaggcaag gattccgaac
      481 tgctccaagc tcaaaccggt gaactgctgg aagcattgca acacttgatt aatcaggtat
      541 ttagccgcaa tctcgccgga agcgcgcgac tggtttgcga cgtcaatgga tttcgtgcca
      601 cgcgtgaggc ggagctgcaa acgatggcga atttcgcggc gaatcgcgtg cgccaaacag
      661 gaatggcctt tacctttgag ccgatgagcg cgaatgaacg gcgcatcatt cacctgacgc
      721 ttgctgatag tgaggatttg tctaccgagt cgatcggcga aggctcggaa cgtaagttga
      781 gaattgttcg caagagttct gcgcccagga actcgtaaag agccaaaccc accagctcgt
      841 tagttctccc tacaatttgt gatgagtact gtcgttgcac tatccactcc aaggggccgc
      901 ggcgccttgg ctgtagttcg tttgagtgga ccagacgcga tcgcgatcgc gcaccacatg
      961 gcgcgcgtcg attcatttga gccgcggtgt gcgacgttaa ccagattgag agctggtgat
     1021 gaagagttgg accaggtgct gctgacttgt tttcccgcgc cgcattcgtt aacgggtgaa
     1081 gacgttgttg agattagttg tcatggttcg ccggcgatcg tgcgacgcat catcgatgcg
     1141 acgcttgagt caggtgcgac gttggctgga ccaggagagt ttacgcttcg tgcgttgagt
     1201 aatggaaaaa ttaacttggc ccaagcggaa gcgattcgcg atctgatcgc ggcgcagact
     1261 gacgcggcgg tgaagcaggc agcgcggcag ttgaatggag agttgtcgaa gacactcgat
     1321 ccgttcacgg agaagttggt ccatgtgatt gtgttgttgg agtcggcgct ggagtttgtc
     1381 gaagacgatc tgccggcaac gcaagtggat caggttgaag agattctgag ttcggtaatc
     1441 gccggcgtgg agcgtttgag ccggagttat agtgcaggac ggctcttgca ggacggcgcc
     1501 aggattgcga taacggggcg tccgaatgtc ggtaagtcca gcctattcaa cggtttagtg
     1561 agaagtgagc gcgcgatcgt gactgacgtt ccgggaacga cgagagatac tttgtcggag
     1621 gcaatcgata ttggcggcgt gccggttgtg ctcacggata cagcgggtct tcgagagacg
     1681 agtgacaata ttgagtcgct cgggatcgag agaacgcatc gtgcgatggg agacgcagat
     1741 cttgttctgc ttgtgctcga tggttcgagt caacttggac cagaagacga gcagctgctc
     1801 aagcagacgt ccgatgctcg tcgccttgtc gtgatgaaca agagcgactt gccttcgttt
     1861 caaccgctcg cgcgttgtgt tgaggatgat gaaccgatta atgtatcggc gcggacaggt
     1921 gaaggacttt cgggattgca tagcgcgata ctggcgaagc tgaacagcgc gggtgctgag
     1981 aacggaagtt tactgatcac taatgcgcgg cattacgatc tgctgtgccg tgcaaagcga
     2041 gaactcgagt cggcgcacgc gtgctttcgt gaccgacaca gtgaggaatt ggttttagct
     2101 ccgctgcaca atgcgctgaa gttgttgggg cagatcaccg gggaaacgac gactgaagat
     2161 atactgtcag agatcttcgc gacgttttgt attgggaagt aagtgatgtt cgacgagcgt
     2221 tttgatgtca tcgttattgg cgccggccat gccgggtgtg aagccgcgtc ggcggcagcg
     2281 cgcctcggcg cggaaacggg tctgatcacg ctcaatctcg atctggtcgg ccaaatgtcg
     2341 tgcaatcccg cgattggcgg cattgcaaaa gggcatttgg tgcgagagat cgacgcgctc
     2401 ggcggaatca tgggacgagt catcgaccgc acgggaattc agttccggct cttgaatcgt
     2461 tctcgtggac ccgcggagca gtctccgcgc gcacaagcag atcgtttgcg ctaccgcagc
     2521 gagatgcggc gaacgctcga agcgacttcg aaccttcatc tgcgccaggg taaggtcgtc
     2581 gattttgttc ttcagaacgg gaagctcgtt ggtgtggagc tcgaggacgg ccgccgtttt
     2641 ggcgccactg cggtagtcgt ggcgaccggc acctttctta atggtcttat tcataccggc
     2701 cgccgcacct atcgggg
//
LOCUS       DASWTX010001033         1833 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_250964, whole genome shotgun sequence.
ACCESSION   DASWTX010001033 DASWTX010000000
VERSION     DASWTX010001033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1833)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1833
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250964"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1137
                     /locus_tag="VGD38_15795"
     CDS             <1..1137
                     /locus_tag="VGD38_15795"
                     /inference="COORDINATES: protein motif:HMM:NF021387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050043 - lactate racemase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactate racemase domain-containing protein"
                     /protein_id="HEY0729544.1"
                     /translation="YYNHDAEWSDGLIKIGETKHKDPLVLNRRAAESDLIIYVNINLV
                     PMDGGHKSVAVGLCDYESLRMHHDPQTIRDSDSYMDPARSSLNHKVVQLGKIVDRELN
                     VFHIETAINNRMYGADMDFLLRNEDDFTAFDRMKFEAMRFTMNKLPRAARRKLLHSRP
                     AAYEMIAVHAGKTEPVHEKIVAKGFEQYAIPIRGQADILITGIPDISPYNVYSILNPL
                     LVQVMALGYHFNFYRNKPLLKKGGVLILHHPCYDEFDHQFHPSYIEFFHRLLPETRDA
                     FTLREKYEQEFANNPSYIEMYRRGNAYHGAHPFFMWYWGENGRQHVGRVIAAGAENAH
                     VPGILGWERADNLTEAIAMARSYMGNSAEITMLHQPMIGIADME"
     gene            1145..>1833
                     /locus_tag="VGD38_15800"
     CDS             1145..>1833
                     /locus_tag="VGD38_15800"
                     /inference="COORDINATES: protein motif:HMM:NF019605.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY0729545.1"
                     /translation="MKLSPTEIYKDRKIFLIGSTGFLGKVTLSMLLHRFPNVGKIYLT
                     VRARSQEESETRFWNNIITAPPFDPLRERYGSALEGFIQDKVVVKGGDIADTNFGYSE
                     EEAQAIADDVDIIINSAGNVTFNPTLESGLRTNVVGTQNVIAFAKRMKRPALVHVSTC
                     FVAGNRSGAVWESDGVLGYFPRRHEMPGVEFSVDQEIADCAKLAERVRDEARDAMMVA
                     KFRELARKRLS"
BASE COUNT          412 a          517 c          532 g          372 t
ORIGIN      
        1 tattacaacc acgacgcgga gtggtccgat ggtctaatca agattggcga gaccaaacac
       61 aaagatccgc tggtactgaa tcgccgcgct gccgaaagcg atctgatcat ctacgtcaac
      121 atcaatctcg tgccgatgga cggcggtcac aagtcagtcg ccgtcgggct ctgcgactac
      181 gagtcgctgc gaatgcacca cgatccgcag accattcgcg actcagacag ctatatggat
      241 ccggcccgct cgtcgttgaa ccacaaggtc gtgcaactcg gaaagatcgt cgatcgcgaa
      301 ctgaacgtct ttcacatcga gaccgccatc aacaatcgca tgtacggcgc ggacatggat
      361 tttctgctac gcaacgaaga cgacttcacc gcgttcgatc gcatgaagtt tgaagccatg
      421 cgtttcacga tgaacaagct gccgcgcgcc gcgcgccgga agctgttgca ctcgcgaccg
      481 gcggcgtacg agatgattgc cgttcacgcc ggcaagaccg aacccgtaca cgagaagatc
      541 gtcgcgaagg gtttcgagca gtacgcgatt ccgattcgcg gccaggctga tatcctgatc
      601 acgggcattc ccgacatctc gccgtataac gtgtattcga tcctgaaccc gttgctggtc
      661 caggtgatgg cgcttggtta tcacttcaac ttctatcgca acaagccgtt gctgaagaag
      721 ggcggcgtgc tgatcctgca ccatccctgt tacgacgagt tcgatcacca gtttcacccg
      781 agctacatcg agtttttcca tcgactgttg ccggagacgc gcgacgcgtt cacgttgcgt
      841 gagaagtacg aacaagagtt tgcaaacaat ccgagctaca ttgagatgta ccggcgcggc
      901 aacgcctatc acggcgcgca tccgtttttc atgtggtact ggggcgagaa cggccgccag
      961 cacgtcggac gcgtgatcgc cgcgggggca gaaaacgcgc acgtgccggg gatcctgggt
     1021 tgggaacgcg cggacaatct gactgaagcg attgcaatgg ctcgcagtta tatgggcaat
     1081 tccgccgaga tcacgatgct gcaccagcca atgattggca tcgcagatat ggagtaggga
     1141 tgaaatgaaa ctgtcgccta ctgagatcta caaagacaga aagatttttt tgatcggaag
     1201 tacgggcttt ctcggcaaag tgacgctgag catgttgctc catcgctttc ccaacgtcgg
     1261 caagatctac ctgacggtgc gcgcgcgctc gcaggaagag tcggagacgc gcttctggaa
     1321 caacatcatt accgcgccgc cgttcgatcc gctgcgcgag cgttacggct ccgcactcga
     1381 aggtttcatc caggacaagg tcgtcgtcaa aggcggcgac atcgccgaca cgaactttgg
     1441 ctacagcgaa gaagaagcgc aggcgatcgc cgacgacgtc gacatcatca tcaactccgc
     1501 cggcaacgtc acgttcaatc ccacacttga gagcggtctg cgcacgaacg tcgtcggcac
     1561 gcaaaacgtg atcgcttttg cgaagcgtat gaaacgtccg gcgctggtcc atgtttcgac
     1621 ctgctttgtt gcgggcaatc gttcgggcgc ggtttgggaa agtgatggcg tgcttggtta
     1681 cttcccgcgc aggcacgaga tgccgggtgt ggagttttcc gtcgatcagg agattgccga
     1741 ctgcgcgaaa ctcgcggagc gcgttcgtga tgaagcgcgc gacgcgatga tggtcgcgaa
     1801 gtttcgcgag ctcgcacgca agcgtctgag tga
//
LOCUS       DASWTX010001034         2370 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_367820, whole genome shotgun sequence.
ACCESSION   DASWTX010001034 DASWTX010000000
VERSION     DASWTX010001034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2370)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2370)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2370
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_367820"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..324
                     /locus_tag="VGD38_15805"
     CDS             <1..324
                     /locus_tag="VGD38_15805"
                     /inference="COORDINATES: protein motif:HMM:NF016165.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin receptor-like dimerization
                     domain-containing protein"
                     /protein_id="HEY0729546.1"
                     /translation="EAAKAWEKNGRTALEIARKAVDAGDTARAERVHKGLMKVERALL
                     DPEGLAGRPWFKHLIYAPRPTYKALVLPALTEAIEARDQSRAKLEVERLTRALKRAAA
                     AIEGV"
     gene            complement(321..1703)
                     /locus_tag="VGD38_15810"
     CDS             complement(321..1703)
                     /locus_tag="VGD38_15810"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY0729547.1"
                     /translation="MYIRFLLLFVVLLLAVPTCSANEIDWTKARAEAVQLLQELIRID
                     TTNPPGNERAAALHLQKLLESDGIETRVLDVAPGRANLYARIKGDGSRRPLILLSHTD
                     VVMAETERWTVPPFSGELRDGYIYGRGAIDMKGTATVHVTLMRLIKRLKVPLKRDLIL
                     LAVADEEAGGTGATSIIEKHPELISGAEFLLNEGDVVYVKNGKVQQYGVDVMEKAALW
                     LKIIAKGPAGHGSIPLANSSVDRLLAALERLRRWETPIRVSPAVAESYRMKAQQQTDP
                     VLRTAYANLQRALQNPTLRKRLLTDSTLNAEVRNTFTITGLQGSDKVNVIPGVAWAQV
                     DARLLPGETPAGFIASLRRVLNDPELEIETLEASIPTGSSADTALMHAIRKVAARRDP
                     GVPVIPTMLTSSTDSAKFRSAGITAYGFEPFKLDDGELARSHGDDERVSVENLGFALQ
                     FLYDVILELN"
     gene            1761..>2370
                     /locus_tag="VGD38_15815"
     CDS             1761..>2370
                     /locus_tag="VGD38_15815"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF013323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-transferase"
                     /protein_id="HEY0729548.1"
                     /translation="MGDAIRRFVHDGEVIVIEGFTHLICFAAAHEIIRQRRRDLTVCR
                     LTPDVIYDQLIGAGCVRRRVFSWAGNPGAGPLYALRRAVEHGIPNSIELEEYSHFGMV
                     ARLTAGAAKLPFYPLRNYMGSDLPRMNPLIKTITCPFTGEELAAVPALNPDTAIIHAQ
                     RADENGNAQIWGLIGVQKEAAFASRNTIVVAEEIVSESVIRSD"
BASE COUNT          497 a          686 c          684 g          503 t
ORIGIN      
        1 gaagctgcga aggcttggga gaaaaacggc cgcaccgcac tcgagatcgc gcgcaaggct
       61 gtagacgcgg gcgacacggc tcgtgccgag cgcgttcaca aaggcctgat gaaggtggag
      121 cgcgcgctgc tcgatccgga aggtctcgct ggccggccat ggttcaagca tttgatctac
      181 gcccctcgtc ccacctacaa agcgttggtc ctgcccgcgc tcaccgaggc gatcgaggcc
      241 cgcgaccagt cgcgtgcgaa gttagaagtc gaacgtctca cgcgtgctct caaacgcgcg
      301 gcggcggcaa tcgaaggcgt ttagttcaac tccagtatca cgtcataaag aaactgtaga
      361 gcgaaaccga gattttctac tgagacacgt tcatcgtcgc cgtgagagcg ggccagttcg
      421 ccgtcatcca gcttgaaagg ctcaaagccg tatgcggtga tgccggcgct gcgaaacttg
      481 gcgctatcag ttgagcttgt gagcattgtc gggatcactg gcactcccgg atcgcgtcgt
      541 gccgcaactt tgcggatcgc atgcatcagg gcggtgtcgg cgctcgatcc cgtaggaatt
      601 gacgcctcaa gagtttcgat ctccaactcc ggatcgttga gcactcggcg caacgacgcg
      661 ataaaacccg cgggcgtttc gccggggaga aggcgagcat caacctgagc ccacgccacg
      721 ccgggaatga cgttgacctt atcgctacct tgcagaccgg tgatggtaaa cgtatttctc
      781 acttcagcgt tgagcgtgct gtcggtcaag agtctcttac gcaacgttgg gttctgaagc
      841 gctctttgca ggttggcgta cgcagttcgt agaacgggat cggtttgttg ttgagccttc
      901 atccggtaac tctccgcgac cgcgggcgag actcgaatcg gagtctccca tcttcgcagc
      961 cgttcgagcg ccgcgagcaa acgatcgacg gacgaattcg ccaacgggat cgagccatgt
     1021 cccgcagggc ctttcgcaat gatcttgagc cagagcgcgg ccttttccat cacgtcgacg
     1081 ccgtattgct gaaccttgcc attcttcaca taaacgacgt cgccttcgtt cagtagaaac
     1141 tcagcgccgc tgatcagctc gggatgcttt tctatgatcg aagtagcgcc cgtgccgcct
     1201 gcctcttcgt ccgcaaccgc caacaggatc agatcgcgtt tcagcggaac cttgagacgc
     1261 tttattagac gcatcagcgt cacgtgaact gttgcggtgc ccttcatgtc gattgcgccg
     1321 cggccgtaga tgtaaccgtc acgcagctcg ccactgaaag gaggtacggt ccagcgctct
     1381 gtttcggcca ttacgacgtc ggtgtgactg agcaggatta gcggacgccg gctgccgtcg
     1441 cccttgatgc gagcgtagag attcgcgcgt cccggcgcga cgtcgagcac tcgagtctca
     1501 atcccatccg actcgaggag cttttgcagg tgcaacgctg cggcacgttc gttaccaggc
     1561 gggttggtag tgtcgattct gatcagttcc tgcagcagtt gaaccgcttc tgcgcgcgct
     1621 ttggtccagt cgatctcatt agccgaacag gtcggcacgg cgagaagcag gaccacaaaa
     1681 agtagtaaaa accgaatgta catatccaca gattaatata atctgtgtac tcagtggata
     1741 aagaaacgaa gttaatgacg atgggtgacg ccatacgccg gtttgtgcac gacggcgagg
     1801 tgattgtcat cgagggcttc acgcacctga tctgtttcgc tgccgcgcac gaaatcattc
     1861 gtcaacgacg acgcgatcta accgtctgcc gcctcacacc cgacgtaatt tacgatcaat
     1921 tgattggcgc cggttgcgtc cggcgacgag tgtttagttg ggcgggtaat cccggcgccg
     1981 gcccgcttta tgctctccgc cgcgctgtcg agcacggcat tcccaattca atcgagctcg
     2041 aagaatactc gcacttcggc atggtcgcgc gtttgaccgc cggcgcggcg aagctgcctt
     2101 tctatccgtt gcgcaactac atgggcagcg atcttccgcg catgaatccg ttgatcaaga
     2161 caatcacttg tccgttcacg ggagaagaac tggccgcagt gccggcgctg aatcccgaca
     2221 ccgcgatcat tcacgctcaa cgcgccgacg agaatggcaa cgcgcaaatc tggggactca
     2281 ttggagtgca aaaggaagcg gcgttcgctt cacgaaacac gatcgtggtt gcagaagaga
     2341 tagtttcgga aagcgttatt cgttccgatc
//
LOCUS       DASWTX010001035         1580 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_123266, whole genome shotgun sequence.
ACCESSION   DASWTX010001035 DASWTX010000000
VERSION     DASWTX010001035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1580
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123266"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(243..>1580)
                     /locus_tag="VGD38_15820"
     CDS             complement(243..>1580)
                     /locus_tag="VGD38_15820"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY0729549.1"
                     /translation="ALARVDHPNVVGLLGAGELDNGQRYTVMQRVSGLTLRSQITNEG
                     MNLERAASILKQIGAGLAHVHENGILHRDLKPENIMLQQLDDGTELVKIVDFGIAKVR
                     ESVVASSTSQNVPVGTLAYMSPEQLRGATELTPASDIFSMAVIAYEMITGRRPFRPTS
                     GPHLLELQRKVHCIKPVELRPELSKEAQAIVLRGLAFDPKSRYQKASEFGKSVAHALP
                     KPAKTSLIKSPPRQRTALIVLLLILVCAAVLLGLYWYFGNNGSPISSRGSNRSFHYWL
                     MVQKMRDGKPYQDPFKSNGQEILESGDRFRLNVSCAASGYLYVFNEGPSETNGASFRL
                     IYPTPDTKSANVAGDQPVQTDWITLRGPAGAENFWIVWSASPIGELESIKNRALGKSA
                     GELTDQSVVAVRSFLTARESDSPAKTTRYKMAQVATVRGAGDLLVTLAQVRHR"
BASE COUNT          338 a          447 c          416 g          379 t
ORIGIN      
        1 gagatcgagc ggcctgatcg ccgtatgctt gtgcagttcg aaattatggc ggtgagtacc
       61 ttcctggatt ctttcgaaga tctctctcgc ttcttcgtca accaggatgc ggctggtcgt
      121 ccacggatta gctgacagga ataggattct gatcttttcg ctcatctgtt tcctcccgcc
      181 taacgtggcg gggaaacagg cgaaatctca tcacggtgga agaaattttt tatgtgtgtc
      241 cgctagcgat gtctgacctg agcaagcgtg acgagcaggt caccggctcc gcgaacagta
      301 gcgacttgcg ccattttata cctcgtagtt tttgccggac tgtctgattc ccttgccgtt
      361 agaaaacttc tgacagcgac cacactttga tcggtcagtt cgccggctga ttttcccagt
      421 gccctgttct ttatagattc cagttcaccg atcggtgaag cggaccagac aatccagaag
      481 ttctcagcgc ctgctggacc tcgcagagta atccaatcgg tttgaaccgg ctgatcgccc
      541 gcgacgttcg cagactttgt atccggcgta ggataaatga gccgaaaact cgcgccgttt
      601 gtttccgatg gtccttcatt gaacacatat agataaccag acgccgcaca cgaaacgttg
      661 agacgaaacc ggtcgccact ctccaggatc tcctggccat tcgacttgaa cggatcctga
      721 tacggctttc cgtcgcgcat cttctgaacc atcagccagt aatgaaacga gcggtttgaa
      781 ccacggctcg agattggcga tccgttgttg ccgaagtacc agtagagtcc aagcagcaca
      841 gccgcacaga ccaatatcaa cagcagaact atcagcgccg ttcgctggcg tggcgggctt
      901 tttattaacg acgtcttcgc cggtttagga agagcgtgcg ccacgctctt accaaactcg
      961 ctcgccttct gatagcgaga cttcggatcg aacgccaatc cgcgaagtac gattgcttgt
     1021 gcttctttcg acagctccgg acgcaactcg accggcttga tgcagtgcac cttgcgctgc
     1081 aactcaagca agtgcggccc ggaagtcggc ctgaacggac ggcggcccgt aatcatttcg
     1141 taagcaatga ccgccatcga gaagatatcg ctggcgggtg taagctcggt tgcaccgcga
     1201 agctgctcgg gtgacatgta ggcgagcgta ccgacgggca cattctgact cgtactcgac
     1261 gcgacgactg actctcgtac tttcgcgatt ccaaaatcca cgatcttcac caactctgtg
     1321 ccgtcgtcga gttgctggag catgatgttt tcgggtttta gatcgcggtg aagaatgccg
     1381 ttctcgtgaa cgtgagccag cccggcgcca atctgcttga gaattgaggc ggcgcgttcc
     1441 aggttcattc cctcgtttgt gatttgtgac ctcagcgtca gaccactcac gcgctgcatc
     1501 accgtgtaac gttgaccgtt atccagttca ccggcgccaa gcagtccaac aacgttcgga
     1561 tggtcgacac gggccagcgc
//
LOCUS       DASWTX010001036         3344 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_12275, whole genome shotgun sequence.
ACCESSION   DASWTX010001036 DASWTX010000000
VERSION     DASWTX010001036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3344)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3344)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3344
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12275"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(231..>3344)
                     /locus_tag="VGD38_15825"
     CDS             complement(231..>3344)
                     /locus_tag="VGD38_15825"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEY0729550.1"
                     /translation="TCEELNSRSNQLAHYLLALGIRTGVRVAICLRHSPEMLVAVLGV
                     LKAGGAYVPLDPSHPRTRHSFMIEDAATPVLLTEQALAQNLPQDGVTQVCLDTDWPTI
                     ATQNFENPNTTVTAEDIAYVIYTSGSTGEPKGVMVRHRSVVNYIWWAVQKYLAGESHD
                     FALYSSLSFDLTVTSIYTPLLTGNAVFIYRQEGRETPLLDILKDDRVGVIKLTPSHLH
                     VMAEVQQPPSRLRRLIVGGEALETSLARKIHENFGGEVEIYNEYGPTEATVGCMIHQF
                     DFAKDNRAFVPIGKPAANTQLYVLDENLEPVAENVVSELYISGDGVAAGYLNREQLTR
                     ERFIANPFIPDQLMYRSGDLVRRLSGDILEYVGRRDEQVKFHGYRVELNEIRSALNSH
                     AQVRDSIVKVVKDGQGQDVLVAYYVSRQELEPGQLRELLRESIAEEIIPNIFVHLKKM
                     PLTLNGKINHRALPTIDEARERARRQYVAARNETEEILAAIWADVLHVSKVGVEDNFF
                     ELGGHSLLAVQVISRIRAVFNVEMPLRSLFEARTVSALARKVEETMRAGRDETLPPIV
                     PVPRDGGNLALSFAQQRLWFLNELAPNRSLYNVSLAVRMHGKLNTQALEQSLREIVSR
                     HEVLRTSFPTVDHNPVQVIAPAIDLKLPVVWLTHLPESLRETEIRRFVDEDARLPFKL
                     AEAPLLRLHLLCLDAEDHMLVCTIHHIVSDGWTIGVIVRELGALYDAFAHGRPSPLAP
                     LAVQYADFAAWQREWLRGEVLDQQLAYWKKQLSGAGEQIELPTDRPRLAVQTYEGAST
                     SFTLKGELVNSLRTLSQREGVTLFMTMLAAFQCLLHRYSGSDDISVGSPIANRSRPET
                     EGLIGCFINTLVLRANLAGNPTFKELLGRVREVTLGAYANQDVPFEVLVEALQPERKN
                     QRTPLFQVWLVLNNVSRQMLELPGLTLNQINRTVWNAHFDLTLSLTEYEDGIDGTLTY
                     NTTLFDEDTAATMAVHLQSLLESVAAHSETRILDIPLERSNTAEAELPPFSQPEQLED
                     HFNFSTL"
BASE COUNT          690 a          998 c          939 g          717 t
ORIGIN      
        1 cttttctact tggggctatg cccctcgttc gggcttcgcc ctgaggccgt aggccgaacc
       61 aggggcttag cccattactt ttttcctctg tgacggcggg gcgtagcccc gcctcacatc
      121 cggcggcata gccgcaacag cagcagtact agtggacttc tgaagcaagc cggtcctatg
      181 cggcgtagcc gcaaccgcag tactaatggt cttttgagac aaagccggtc ctatagagtt
      241 gagaagttga agtgatcttc gagctgttcc ggttgggaga agggcgggag ttccgcctct
      301 gctgtgttcg aacgctccag gggaatgtcg aggatccgcg tctcggagtg cgccgccacg
      361 ctttccaaca acgattgaag gtgaaccgcc atggtggctg cggtatcctc gtcgaagaga
      421 gtcgtgttgt aagtcaacgt cccatcaatt ccatcctcgt attccgtcag cgacaacgtc
      481 aggtcgaagt gcgcgttcca aacggtccgg ttgatctggt tgagtgtcag cccgggcaac
      541 tccagcatct ggcgcgagac attgttcagc accagccaca cctggaacag cggcgtgcgt
      601 tggttcttac gctcgggttg cagcgcctcg accagcactt caaaaggcac gtcctgattg
      661 gcataagcgc cgagcgtcac ctcgcgtacg cgccccaaca gctctttgaa cgtcgggttg
      721 ccggcgaggt tcgcgcgcag cacgagcgta ttgatgaagc aaccgatcaa cccttcagtt
      781 tcaggccggc tgcgatttgc gatcggcgat ccgacactga tgtcgtcgct gccggagtaa
      841 cggtgcagca gacactgaaa cgccgcgagc atcgtcatga agagcgtgac accctcacgc
      901 tggctcaacg ttctgagcga gttgaccaac tcgcctttga gagtaaacga ggtgctcgca
      961 ccttcgtacg tctgcacggc cagccgtggc cggtctgtcg gcaactcgat ctgctcgccc
     1021 gctcccgaca actgcttctt ccagtacgct aactgctggt ccaacacctc accacgcaac
     1081 cactctcgct gccatgccgc aaaatccgca tactgcacgg ccaacggcgc caacggcgac
     1141 gggcgcccgt gtgcaaaagc atcgtaaagc gcacctagtt cacgaactat cacgccgatg
     1201 gtccaaccat cactgacgat gtggtgaatg gtacaaacca gcatgtgatc ttcagcgtcc
     1261 aaacagagaa gatggagacg cagcagtgga gcctcggcaa gcttaaacgg caaacgcgca
     1321 tcttcgtcta caaagcggcg aatctcagtc tcgcgcaacg actcgggcaa gtgcgtcaac
     1381 cagaccacag gcaacttcaa gtcgatcgcg ggcgcaatca cctgcaccgg gttgtggtcc
     1441 acggtcggga aactcgttcg taaaacttca tgacggctca cgatctctcg cagcgattgc
     1501 tcgagcgctt gcgtgttcaa cttgccgtgc atccgcacgg ccagcgagac gttgtaaaga
     1561 gatcgattcg gcgccagttc attcaggaac cagagacgct gttgcgcgaa agagagcgcg
     1621 aggttcccgc cgtcacgcgg caccggcacg atcggcggca aggtctcgtc cctgcccgcg
     1681 cgcattgtct cttccacttt tcgagccagc gcactcaccg tccgcgcttc aaagagactc
     1741 cgcagcggca tctcgacatt gaacactgcc ctgatgcgcg agatgacttg caccgccagc
     1801 aaagaatgcc cgccgagttc aaagaaatta tcttcgacgc cgactttgct gacgtgaagc
     1861 acgtcggccc agatcgccgc gagaatttcc tcagtttcgt tgcgcgccgc aacgtattga
     1921 cgccgcgcgc gctctcgcgc ttcatcgatc gtcggcaatg cgcgatggtt aatcttgccg
     1981 ttgagcgtga gcggcatctt tttcagatgg acaaagatgt tcgggatgat ctcttcggca
     2041 atgctttctc tcaacaactc gcgcaactgc cccggctcaa gttcctgccg cgacacgtaa
     2101 tacgccacga gcacgtcctg tccctgaccg tccttgacga ctttgacaat gctgtctctc
     2161 acttgcgcgt gactgttcag cgcgctccgg atttcattca actcaacgcg gtagccgtga
     2221 aacttcacct gctcgtcacg ccttcccacg tactcgagaa tgtcgccgct gagacgccgc
     2281 acgagatcgc cactgcgata catcagttga tccgggatga agggattcgc gatgaaccgc
     2341 tctctcgtta attgctccct gttgaggtaa cccgcggcca ctccgtcgcc ggaaatataa
     2401 agctcgctca cgacgttctc ggcaacgggt tcgaggtttt cgtcgagcac gtaaagctgc
     2461 gtgttggccg caggctttcc gatgggcacg aacgcgcggt tgtctttggc gaagtcgaac
     2521 tggtgaatca tgcatccgac ggtcgcctcg gttggaccat actcgttgta tatctccacc
     2581 tcgccgccga aattttcgtg aatcttccgc gcgagtgacg tctcgagtgc ttcaccaccg
     2641 acgatgagtc gccgcaaacg gctcggaggt tgttgaacct ctgccatcac gtgcaggtga
     2701 ctcggcgtca gcttgataac gccaacgcga tcgtctttca ggatgtcgag gagcggcgtt
     2761 tccctgccct cctgccggta gatgaagacg gcgtttccgg ttagcagcgg cgtgtagatg
     2821 gaagtgacag tgaggtcaaa cgaaagcgat gagtagagcg cgaaatcgtg actctcgccg
     2881 gctaagtatt tttgcacagc ccaccagatg tagttgacca cggaacgatg ccgaaccatg
     2941 acgcctttcg gttcgcctgt cgaaccggag gtgtagatga cataagcgat gtcttcggca
     3001 gttactgttg tgttgggatt ttcgaagttt tgagttgcga tcgtgggcca gtccgtgtcg
     3061 agacacactt gcgtcacacc atcttgcggc aggttttgtg cgagcgcttg ctctgtgaga
     3121 agcaccggcg tcgccgcgtc ttcgatcatg aatgaatggc gcgtgcgtgg atgcgaaggg
     3181 tcgagcggca cgtatgcgcc acccgccttg agaacgccga gaaccgcgac cagcatctcc
     3241 ggcgaatggc gcagacagat cgcaacgcgc acaccggttc gtattcccaa cgccagcagg
     3301 tagtgtgcaa gctggttaga gcgtgagttt aattcttcgc aagt
//
LOCUS       DASWTX010001037         3136 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_123273, whole genome shotgun sequence.
ACCESSION   DASWTX010001037 DASWTX010000000
VERSION     DASWTX010001037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3136
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123273"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..391
                     /locus_tag="VGD38_15830"
     CDS             <1..391
                     /locus_tag="VGD38_15830"
                     /inference="COORDINATES: protein motif:HMM:NF014674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729551.1"
                     /translation="SELQRELEASGRTAADSPVPPEELGALVRLIDEEKISGKQAKDV
                     LVEMFKTGKGALVIIQEQGLVQVSDTGEIDALIDEVMAANPDQVANYRGGKEALLGFF
                     VGQVIKASKGKANPKIVNERLQAKLSG"
     gene            399..1118
                     /locus_tag="VGD38_15835"
     CDS             399..1118
                     /locus_tag="VGD38_15835"
                     /inference="COORDINATES: protein motif:HMM:NF005594.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY0729552.1"
                     /translation="MELSGRKAVVTGGTRGIGRAIAQALITAGVDVIITARDEDKIAT
                     TVNELNELGPGRCAGFVCDVRDESQVKELFTHAATVLGGLDILINNAGIGIFASVEAT
                     SGDDFRAVIETNLCGVFYCCQEASPLMRQRGGGYIINISSLAGANPHANMAAYNASKF
                     GLNGFSEALMQEVRHDGIKVSYIMPGSVNTEFGGDEPSSEKSWQLQPEDIARVVMDLL
                     QYPDRPLASRIEIRPSRPPKR"
     gene            1115..2098
                     /locus_tag="VGD38_15840"
     CDS             1115..2098
                     /locus_tag="VGD38_15840"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HEY0729553.1"
                     /translation="MKLLSLLFLATLLLVNSSQESPELEESNTLNESAVKLYNQGKYN
                     EALPLAKRALEIRDKLLPRTDPRISSSLTNLGEIYLAQKDYKPARETFQRLLQIQEES
                     FGPEDVNLAFTLDRLAVLYYVARNSRETEAAYKRALALREKALGANDVQVAEAWFKLG
                     EFYRFERDLKPALESYKRALNLYGKLTGTTTREFERASDGFACLGYDHHKPELFKELT
                     MIRKQFSGEETPDEAEALTVLNGQALSLPQPEYPGAAAARRLMGLVVVKVQIDEKGNV
                     IAATDMCKGPPFLSEAAVAAARKARFMPTTINGQPVKISGVIRYNFTRRFR"
     gene            2103..2552
                     /gene="dtd"
                     /locus_tag="VGD38_15845"
     CDS             2103..2552
                     /gene="dtd"
                     /locus_tag="VGD38_15845"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: protein motif:HMM:TIGR00256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacyl-tRNA deacylase"
                     /protein_id="HEY0729554.1"
                     /translation="MRAVVQRVTRTRVTVDDEIVGEIGNGLLVLLGVAHDDTKQDADY
                     LAPKIVSLRIFDDAEGKMNLPLKDTGGGLLVVSQFTLYGDVRRGLRPSWSDAAPPEVA
                     EPLYEYFVEASRKLISHVATGSFRKMMQVELVNDGPVTIMLDSRKLF"
     gene            complement(2559..2951)
                     /locus_tag="VGD38_15850"
     CDS             complement(2559..2951)
                     /locus_tag="VGD38_15850"
                     /inference="COORDINATES: protein motif:HMM:NF039411.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6335 family protein"
                     /protein_id="HEY0729555.1"
                     /translation="MAKKGDDIYLANDPNYVPDPEIEEFMEQEIHRAPKDPDLLANRL
                     RNNTAASPRDAGGDLDADWEDVNDSGSETVAGDNPTPDQSLVEENANAIGVSFEDNEE
                     LEFIDKIEKRDRDRFELDENSKAYEDMI"
BASE COUNT          721 a          848 c          903 g          664 t
ORIGIN      
        1 ctcggagttg cagcgcgagc ttgaagcttc cggacgaacc gctgcggatt cgcccgttcc
       61 gccggaagaa ttgggcgcgc tcgtgcgttt gatcgacgaa gaaaagatca gcggcaaaca
      121 agcgaaggac gtgctggtcg agatgttcaa gaccggcaag ggcgcgctcg tgatcattca
      181 ggagcaggga ctggtccagg tcagcgacac gggcgagatc gacgcgctca tcgatgaagt
      241 gatggctgct aatcccgatc aggtcgcgaa ttatcgcggc ggcaaagagg cgttgttagg
      301 tttcttcgtc ggccaggtga tcaaggcgtc gaaagggaag gcaaacccga agatcgtgaa
      361 cgaacgcttg caggcaaagc tttccgggta atctgtgaat ggaattatca ggtcgcaaag
      421 ccgttgtaac cggaggcacg agaggcatcg gccgggccat cgcacaagct ctgattaccg
      481 ccggtgtcga cgtcatcatc actgcgcgcg atgaagacaa aatcgccacg acggtaaacg
      541 agttgaatga actcggcccc ggccgctgtg caggttttgt ttgcgacgtt cgtgatgagt
      601 cacaagtcaa agaactcttc acgcacgcag ccactgttct cggcggtctc gacatcctca
      661 tcaacaacgc cggcatcggc atcttcgcct ccgttgaagc aaccagcggc gacgattttc
      721 gcgcggtgat cgaaacaaac ctttgcggcg tcttttactg ttgccaagaa gccagtccgt
      781 tgatgcgcca acgcggcggc ggttacatca tcaacatctc ctcgctcgcc ggcgccaacc
      841 cgcatgcgaa catggctgct tacaacgcgt cgaagtttgg cctgaatggt tttagcgagg
      901 cgttgatgca ggaagtgcgt cacgacggca tcaaggtgag ttacattatg ccgggttcgg
      961 tcaacactga atttggcggc gacgagccga gctcggagaa gagttggcaa ctccaacccg
     1021 aagacatcgc gcgcgtcgtg atggacctgc ttcagtatcc ggatcgcccg ctggcaagcc
     1081 gcatcgagat tagaccaagc cgtccgccaa agcgatgaag ttactgagtc ttctattcct
     1141 cgccaccctg cttctcgtta actcgtcaca agaatcaccc gaacttgaag aatcgaacac
     1201 gctgaacgaa tcggctgtga agctttataa ccaggggaag tacaacgaag ccctgccact
     1261 cgcgaaacgc gcgctcgaga tccgtgacaa actcttgccg cgcaccgatc cacgtatctc
     1321 gagctcgttg accaatctcg gcgagatcta cctcgctcaa aaagactaca agcccgcgcg
     1381 agaaaccttt cagcggctgc tacagatcca ggaagaatcg tttggtccag aggacgtgaa
     1441 tctcgcgttt acactcgatc gcttagccgt cctttattat gtagcgagaa attcgcgtga
     1501 gactgaggct gcgtacaagc gcgcgctcgc gttgcgtgag aaggccctcg gcgcgaacga
     1561 tgtgcaggtc gctgaagcgt ggttcaaact cggggagttt taccggttcg agcgagacct
     1621 caagcccgcg ctcgaaagtt acaagcgagc attaaacctt tacggcaaac tcacaggcac
     1681 cacgactcgt gagtttgaac gcgccagcga cgggttcgct tgtttgggtt acgaccatca
     1741 caagcctgag ctgttcaaag agttgaccat gatcagaaaa cagttttccg gcgaagagac
     1801 acccgatgaa gcggaggcgc taacggtctt gaacggccag gcgctgtcat tgcctcagcc
     1861 ggaatatccg ggcgcggcgg cggctcgccg gctcatggga ctcgtggtcg tgaaggttca
     1921 gatagatgaa aagggaaacg tgatcgcggc gacggacatg tgcaagggac caccgttttt
     1981 gagcgaagcg gctgtggccg cagcacgaaa agcgcgtttc atgccgacga cgatcaatgg
     2041 ccagccggta aagatcagcg gcgttattcg atacaacttc acgcggcggt tcaggtaaaa
     2101 agatgcgagc agtggtacaa cgtgtgacgc gcacgcgggt cacggttgat gatgaaattg
     2161 tcggcgagat cggaaatggc ctcctcgtct tgttgggcgt ggcccatgac gacacgaagc
     2221 aggatgcaga ttacctcgcg ccgaagatcg tgtcgctgag aatctttgac gacgccgaag
     2281 gaaagatgaa cctgccgctg aaagacaccg gcggcgggtt gctggttgtt tctcagttca
     2341 cgttgtatgg agacgtgcgc cgcggcttgc ggccttcgtg gagtgatgcg gccccgccgg
     2401 aagttgcgga gccgctttac gaatactttg tcgaagcgag ccggaaactg atctcacacg
     2461 tcgcgacggg cagtttccgg aagatgatgc aggttgaact cgtcaacgat ggaccagtga
     2521 cgataatgct ggacagccgg aagctctttt gacgttcgtc agatcatgtc ctcgtacgct
     2581 ttcgaattct catcaagctc aaaccgatcg cggtcgcgct tttcgatctt gtcgatgaac
     2641 tcgagctctt cgttgtcttc gaaactcacg ccgatcgcgt tggcgttctc ttccacaagc
     2701 gactgatcgg gcgtcggatt gtcgccggcg actgtttcgg aaccactgtc gttcacgtct
     2761 tcccagtctg cgtcgagatc gccgccggca tctcgcggcg aggcggcggt gttgttgcgc
     2821 agccggttcg ccagcaggtc gggatccttc ggagcacggt gaatttcctg ctccataaac
     2881 tcctcgatct ccggatcggg aacataattc ggatcgttcg ccaaataaat atcgtcgccc
     2941 tttttcgcca tgcgggtctc cttgctcggt tcgcaaattg tttgggggta agtaagtgta
     3001 gacaggattt acagaaacca caagatagcc cttcttggaa ttctgtaaat cctgtcttaa
     3061 actgcaactt gaaccacaac aaacaaaatc atctcttctc gaagaaagtg tttgagcacc
     3121 accatgccag aatgtc
//
LOCUS       DASWTX010001038         1829 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_58294, whole genome shotgun sequence.
ACCESSION   DASWTX010001038 DASWTX010000000
VERSION     DASWTX010001038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1829)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1829)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1829
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58294"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..208
                     /locus_tag="VGD38_15855"
     CDS             <1..208
                     /locus_tag="VGD38_15855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729556.1"
                     /translation="FAATPESHAGAGFTCHYKFPHGETRLQGMIMKGLLVLAQFHFFN
                     EDADRENFFLREYFAATHDRFLKG"
     gene            212..571
                     /locus_tag="VGD38_15860"
     CDS             212..571
                     /locus_tag="VGD38_15860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729557.1"
                     /translation="MIKTGNVSSVFGRWLNTNRDTPTIAECTVSQDKDGIAVQVIGAD
                     KEPWPIARPTVLANLEEEAGQRSVALMAKFDLGHMMLDTHMRVNKGVFVIVVYATFKD
                     GSGRSNHLYREFFYRSE"
     gene            575..1333
                     /locus_tag="VGD38_15865"
     CDS             575..1333
                     /locus_tag="VGD38_15865"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY0729558.1"
                     /translation="MGFISTKTGQFTYFAQQLGESNWRGKNVLDFGGNVGNILREPDS
                     TIDHERYWCIDVVPESIEKGKVEFPDAHWVFYDRHCFYFNPFGVRDLALPSLDQTFDY
                     IVAYSVFTNTPRADMLQLVEQLENTLAPGGAFAFTFIDPHYHSWPDLYPSNNLVWRLQ
                     REIFLEGNKGNTLDIDVPALAERAKDASWFVLVNGEDLYLETEDVPEYEPEQQRTYHT
                     FYTVDYMRSLFPQATIMPPANDEMQHCCVIKKAN"
     gene            1333..>1829
                     /locus_tag="VGD38_15870"
     CDS             1333..>1829
                     /locus_tag="VGD38_15870"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEY0729559.1"
                     /translation="MDFVPLTSDQRRAFAEDGFLVVPNALDRETVDRLLSVADRLADS
                     FLHKPVVDGKPEYNHLDLRRGLMREKALFDLVTHSTTVPLVVQLLGPNIHLHSTSIIY
                     KRRETGELPTFRRGWHRDIRMARDLGNAGLPLAGLKICYCLTDFPEPNSGMTLMARGT
                     HLHNAP"
BASE COUNT          391 a          530 c          514 g          394 t
ORIGIN      
        1 attcgccgcg acgccggagt cgcacgccgg cgcgggcttc acgtgccact acaaattccc
       61 gcacggcgaa acgcgtttgc agggaatgat catgaagggc ctcctggtgt tggcccagtt
      121 tcatttcttc aacgaagacg ccgatcgcga gaattttttc ctgcgcgagt acttcgccgc
      181 gactcacgac cgttttctca aggggtaact gatgatcaaa accggaaacg tctccagtgt
      241 gtttggacgc tggctcaata caaaccgcga cactcccacg attgccgagt gcaccgtatc
      301 gcaggacaaa gacggcattg ccgtgcaggt catcggcgcc gacaaggagc cgtggcccat
      361 cgctcgcccg acagtgctcg ccaatctcga agaagaagcc ggacagcgtt cggttgcgtt
      421 gatggccaag ttcgatctgg gccacatgat gctcgacacg cacatgcgtg tgaacaaggg
      481 cgtgttcgtc atcgtcgtgt acgcgacgtt caaagacggc agcggccgat cgaatcatct
      541 ctaccgcgag ttcttttaca ggtccgagta agccgtgggt tttatttcaa cgaaaacggg
      601 gcagttcact tacttcgcac agcaactcgg ggaatcaaac tggcgcggca agaacgtcct
      661 cgacttcggc ggaaacgtcg gcaacatcct gcgcgagccg gattccacga tcgatcacga
      721 gcgttactgg tgcatcgacg tcgtgccgga gtcgattgaa aagggaaagg tcgagtttcc
      781 cgacgcgcat tgggtctttt acgatcgcca ttgcttctac tttaatccgt ttggagtccg
      841 cgacctcgcg ctgccgtcgc tggatcaaac attcgattac atcgtcgcct attcggtgtt
      901 cacgaacaca ccgcgcgcgg acatgcttca gttggtcgag cagttggaaa acactttggc
      961 gccgggcggc gcgttcgcgt tcacgtttat cgatccgcac taccactcgt ggccggatct
     1021 ttacccgtca aacaatctcg tctggcggct gcagcgtgag atctttctcg agggaaacaa
     1081 gggcaacacg ctcgacatcg atgtcccggc ccttgccgaa cgtgcaaaag acgcgagctg
     1141 gtttgtacta gtaaacggcg aagatttgta tctggaaaca gaagatgttc cggagtacga
     1201 accggaacag cagcggacgt atcacacgtt ctacaccgtc gattacatgc ggtcgctgtt
     1261 tccgcaggcg acgatcatgc cgccggcgaa tgatgaaatg cagcactgct gtgtgatcaa
     1321 gaaagctaac tgatggactt cgtgccactc acttccgatc agcgccgcgc gtttgccgag
     1381 gacggctttc tcgtcgtccc gaatgcgctc gatcgcgaaa ctgtggaccg actgctgagc
     1441 gtcgccgatc ggttggcgga ttcgtttctg cacaagccgg tggtcgacgg caagcctgaa
     1501 tacaatcatc tcgacctgcg gcgcggcctg atgagagaga aagcactgtt cgatctcgta
     1561 acacattcca cgactgtgcc gctcgtggtc caactgttgg gtccgaacat tcacctgcac
     1621 tcgacgtcga tcatttacaa gcgtcgcgag acaggtgagt tgccaacgtt tcgccgcggc
     1681 tggcatcgcg atatccgcat ggcgcgcgac ctcggaaacg ccggactgcc gcttgcggga
     1741 ctcaagatct gttattgcct gactgatttt cccgagccga actccggcat gacgttgatg
     1801 gcgcgcggca ctcatttgca caacgcgcc
//
LOCUS       DASWTX010001039         3043 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_232073, whole genome shotgun sequence.
ACCESSION   DASWTX010001039 DASWTX010000000
VERSION     DASWTX010001039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3043
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232073"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1240
                     /locus_tag="VGD38_15875"
     CDS             <1..1240
                     /locus_tag="VGD38_15875"
                     /inference="COORDINATES: protein motif:HMM:NF013717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin dinucleotide binding
                     domain-containing protein"
                     /protein_id="HEY0729560.1"
                     /translation="VNPGEVWEENEFWLELTWRIDPDGSLGIRQYAESKKNPGTRLSI
                     DEYYEWIFDHSVPGLPEKAAEEDLTPLQFMRRYGAFEVKDKIGKIYDQTVGPEELDDA
                     REDHLGRIFTRAPKTAGPNIVPIPMPDGDAEGRRLVGVNINGEIKRGFPTPSGKLEFY
                     STTLANWGWPELAIPIYFKSHVHKDNLAEDQTILISTFRLPVQIHTRSANSKWLDEIA
                     HANPLWIHPSHANKLGVRTGDLLRVETEIGYYVVPAWVTEGIRPGIVACSHHMGRWKL
                     NDGEGQRQMMATVKLEQNGTTWRLKREKGITPYESSDGDTLRIWWKDAGVHQNMTFPV
                     HPDPISGMHCWHQAVRVRVADAADQPGDIFVDTEKSREVYQRWLAMTRPADKFSPDNT
                     RRPYWMLRPLKPAREFYKLP"
     gene            1245..2645
                     /locus_tag="VGD38_15880"
     CDS             1245..2645
                     /locus_tag="VGD38_15880"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEY0729561.1"
                     /translation="MYFKQFYLGCLAHASYLIGSDGEAAVVDPQRDVDEYIPEAEANK
                     LTIKYVIETHLHADFVSGHQELAARTGAEIVFGEKANAAFPHRAVRDNEEIKLGKVVL
                     RFIETPGHTPEGICVLVIDTDISNAPQKILTGDTLFIGDVGRPDLAGGKGYTPQMMAE
                     MMYESLHEKILKLPDDVEVYPAHGAGSMCGKNLSKETSSTIGEQRKFNYALKPMTKEQ
                     FVSMMTADLPEAPAYFPRDAEINRAGARELSELSPPAALSPQQVSELREQGHVLLDVR
                     SSTEFGAGHVPGSVNIGLGGQFAMWAGSLIPLNSSIVIVAESSEQVDESVVRLARVGI
                     ENVKGYLEGGVESWSRAGFPVDSIPQVTVNELNEKLAAGDELQVVDVRRPAEYGSGHV
                     PSALNAPLTTLDRIAEELPIEKDKPTAVICAGGYRSSAAASLLEQLGFTNLLNVSGGT
                     GAWINAGYPVETPTTK"
     gene            2760..>3043
                     /locus_tag="VGD38_15885"
     CDS             2760..>3043
                     /locus_tag="VGD38_15885"
                     /inference="COORDINATES: protein motif:HMM:NF016196.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729562.1"
                     /translation="MLFHPYKAVKLFGITIWPQGMIPRHREKLAQSIGNAVGNELVSQ
                     QTVFDALFETDFFQNKVEDFVGGYTNELLARVYPSFIDALPSQARAPVLDT"
BASE COUNT          700 a          900 c          881 g          562 t
ORIGIN      
        1 cgtcaatccc ggcgaggtgt gggaagaaaa cgaattctgg ctggaactaa cctggcgcat
       61 cgatcccgac ggcagcctcg gcatccgcca gtacgccgaa agcaaaaaga acccaggcac
      121 gcgtctcagc atcgacgaat actacgaatg gatcttcgat cattcagttc ccggtctgcc
      181 ggagaaagcc gcggaagaag atctgacgcc gcttcaattc atgcgccgct acggggcttt
      241 tgaagttaaa gacaagattg gcaagatcta cgatcaaaca gtcgggccag aagagctcga
      301 cgacgcacgc gaagatcacc tcggccgcat cttcacgcgc gcgccaaaaa ctgctggtcc
      361 aaacattgtg ccaatcccaa tgcccgacgg cgacgccgaa ggccgccgtc tcgtcggcgt
      421 aaacatcaac ggcgaaatca aacgcggctt cccaacgcca agcggcaagc tcgagtttta
      481 ttcaaccact ctggccaact ggggttggcc agagcttgcg attccgatct acttcaagag
      541 ccacgttcac aaagacaatc tcgcggaaga ccaaacgatt ctgatctcaa cgttccgctt
      601 gccggtccaa attcacaccc gcagcgcaaa ctcaaaatgg ctcgacgaga tcgcgcacgc
      661 aaaccctttg tggattcacc cgagccacgc aaacaaactc ggcgttcgca ccggcgatct
      721 gctgcgcgtc gaaaccgaga tcggttatta cgtcgtgccc gcgtgggtca cggaaggcat
      781 tcgtcccggc atcgtcgcgt gcagccatca catgggccgc tggaaactga acgacggcga
      841 aggccagcga cagatgatgg ccacggtcaa gttggaacag aacgggacga cgtggcgttt
      901 gaaacgagag aagggcatca cgccctacga atcgagcgac ggcgacacgt tgcgaatctg
      961 gtggaaagac gcgggcgtgc accagaacat gacttttccg gttcatcccg atccgatctc
     1021 gggaatgcat tgctggcatc aggcggtgcg cgtgcgcgta gccgatgccg ccgatcaacc
     1081 gggcgatatt tttgtcgaca cggagaagtc gcgcgaggtt tatcagaggt ggctcgcgat
     1141 gacgcgtccg gcggataagt tttcaccgga caacacgcgg agaccgtact ggatgctccg
     1201 cccgttgaaa ccggcgaggg agttttataa gctgccgtag tccaatgtac ttcaaacagt
     1261 tctatctcgg ctgcctggca cacgcttcgt acctcatcgg ctcggatggc gaagctgcgg
     1321 ttgtcgatcc gcaacgcgac gtcgacgagt acatccccga agccgaagcg aacaaactta
     1381 cgatcaagta cgtcatcgaa actcacctgc acgccgattt tgtcagcgga catcaggagc
     1441 tcgccgcacg cacgggcgcg gagatcgtgt tcggcgagaa agccaacgcc gcgtttccgc
     1501 atcgcgccgt tcgcgacaac gaagaaatca agcttggcaa agtcgtgctg cgcttcatcg
     1561 agacgcccgg tcacacaccg gaaggcatct gcgtgctcgt catcgacacg gacatctcaa
     1621 atgcaccgca gaagatcctc accggcgaca cgctgttcat cggcgacgtc ggacggcccg
     1681 acctcgcagg cggcaaaggc tacacgccgc agatgatggc cgagatgatg tacgagagcc
     1741 tgcatgaaaa aatcctgaag ctgccggacg acgtcgaggt ctatccggcg cacggcgcgg
     1801 gttcgatgtg tggaaagaac ttgtcgaaag aaacatcgtc gacgatcggc gaacaacgca
     1861 aattcaatta cgcgctcaag ccgatgacga aagaacaatt cgtgtcgatg atgacggcgg
     1921 atcttccgga ggcgccggcg tactttccac gcgacgccga gatcaatcgc gcgggcgcgc
     1981 gtgaactctc tgaattatca ccaccagcgg cgctctcgcc gcaacaggtt tccgagttgc
     2041 gcgaacaggg ccacgtgctg ctcgacgtgc gctcgtctac cgagttcggc gccggtcacg
     2101 tgccgggttc ggtaaacatc gggctcggcg gacagtttgc gatgtgggcc gggagtttga
     2161 tcccgttgaa ttcatcgatc gtgatagttg ctgaaagcag cgagcaggtc gatgaatccg
     2221 tggtccgcct tgcgcgcgtc ggtatcgaga acgtgaaggg ctacctggag ggcggcgtgg
     2281 aaagctggag ccgcgcgggt tttccggttg attcgattcc gcaggtcact gtcaacgagt
     2341 tgaacgagaa gctcgccgcg ggtgacgaac tgcaagtcgt cgacgtgcgc cggccggctg
     2401 aatacggcag cggccacgtg cccagcgcac tcaacgcgcc gctgacgact ctcgatcgca
     2461 tcgccgaaga gttgccgatt gaaaaagaca aaccaaccgc cgtgatttgc gccggcggtt
     2521 atcgttcgag cgcagcggcg agtttgctgg agcagttggg cttcacgaat ctgctgaacg
     2581 tttcaggcgg aaccggcgcc tggataaatg ccggttatcc cgtcgagacc cccaccacaa
     2641 aataatactt acgcttcgag gcgaacatcg atccgttaac gttcaaaatc ctggtagcga
     2701 ttggaatcat cgtcgtcgcc accattcacg gcttcggcgc ggcgtggctc gcgatctgga
     2761 tgctgtttca cccgtacaaa gcggtgaaac tattcggcat caccatctgg ccgcagggca
     2821 tgatcccgcg ccatcgcgaa aagttggccc agtcgatcgg taacgccgtc ggcaacgagc
     2881 tcgtttcaca acaaaccgtc ttcgacgcgc tcttcgaaac cgatttcttt caaaacaaag
     2941 tcgaggactt cgtcggcggt tatacaaacg agcttctcgc gcgcgtgtat ccatcgttca
     3001 tcgacgcgtt gccgtcgcag gcgcgcgcgc cggtgctcga cac
//
LOCUS       DASWTX010001040         1674 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_169576, whole genome shotgun sequence.
ACCESSION   DASWTX010001040 DASWTX010000000
VERSION     DASWTX010001040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1674
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169576"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1674)
                     /locus_tag="VGD38_15890"
     CDS             complement(<1..>1674)
                     /locus_tag="VGD38_15890"
                     /inference="COORDINATES: protein motif:HMM:TIGR02074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PBP1A family penicillin-binding protein"
                     /protein_id="HEY0729563.1"
                     /translation="VSGLARALLRNAGDEKLGQGGSTITQQLVKNTYLSPEKTLQRKY
                     AEAMLSLALERRLSKEDIFALYCNEIYLGQRGAVAVRGVKEAASVFFGKELRDLTLAE
                     AATLAGMIQSPAHYSPLRNPEAAQARRNMVLAAMQENGAITREENDAATAVPVNVTSR
                     IDLDNSLAPYFVDYVNRMVDSSSGRRVYTTIDLELQDLAEQALRKQLERYKDQDKKPQ
                     AALVALDPHTGNVLAMVGGSDYAKSQLNRATDARRQPGSTFKPFVYAAAVEDGLSPVQ
                     LFMDAPREFVYDRNRTYRPANYGGGYSMGEVTLRTGLIKSLNVVTVDVALQTGLARIA
                     NLAVEFGLPKPERYPALALGTEEVTPLQLASAYAAFVNEGRRVDPKVITSIDEPPAAH
                     ALENNTPQVVSPTTAYVITNMLAGVIERGTARKARGAIPGTAIAGKTGTSRDGWFVGY
                     SPNLVCVVWIGYDDNAQLGLTGAEAALPAWVEFMKGAVAVRPDLGGQNFDCPEGIKFV
                     EIDSATGLLSTVGCPLRELIAVTEAEAPHFECYLHGNLPVLSSPFAMEIE"
BASE COUNT          347 a          558 c          439 g          330 t
ORIGIN      
        1 ctcaatctcc atcgcaaacg gactactcag caccggcaag ttcccatgca gataacactc
       61 gaaatgcggc gcctccgctt cagtcaccgc gatcaactca cgcagcggac accccaccgt
      121 cgacagcaat cccgtcgcgg aatcgatctc gacaaacttg ataccttccg gacagtcgaa
      181 gttctgtcca cctaagtcag gccgcaccgc gaccgcgcct ttcatgaact caacccacgc
      241 aggcagcgcg gcttcagcac ccgtcagacc gagttgcgcg ttgtcgtcgt aaccaatcca
      301 aacgacgcaa acgagattcg gcgagtaacc gacaaaccag ccatcgcgcg acgtgcccgt
      361 cttgcccgcg atcgctgttc ccggtatcgc gccacgagcc ttacgtgcag tgccgcgttc
      421 gatcacgccc gcgagcatgt tggtgatgac gtaggcggtt gtcggactga caacctgcgg
      481 cgtgttgttt tccaacgcgt gcgcggcagg cggctcgtca atgctcgtga tcactttcgg
      541 atcgacgcgc cggccttcgt tgacgaaagc cgcgtacgca gacgcaagct gaagcggcgt
      601 cacttcttca gtgccgagcg ccagcgccgg ataacgctcc ggcttcggca gaccaaactc
      661 cacggcgaga ttcgcgatac gcgccagtcc ggtttgtagc gctacgtcaa cggtgacgac
      721 gttcagcgat ttgatgagac ccgtacgcag cgtcacttca cccatcgaat atccgccacc
      781 gtaattcgct ggccggtacg tgcgattgcg gtcgtaaaca aactcacgcg gcgcatccat
      841 gaaaagctgc accggcgaca gtccgtcttc aacagcagcc gcataaacga acggtttgaa
      901 cgtcgaaccg ggctggcggc gcgcgtcggt cgcgcgattc aactgcgact tcgcgtagtc
      961 acttccacca accatcgcga gcacgttccc cgtgtgcgga tccaaagcaa ccagcgctgc
     1021 ctgcggcttc ttgtcctggt ccttgtaacg ttctaactgt ttcctcaacg cctgctcggc
     1081 gagatcctgc aactcgagat cgatcgtcgt gtagactcgt cttccacttg acgaatcaac
     1141 catccggttt acgtaatcaa caaagtacgg cgcgagcgaa ttatcaagat cgatacgcga
     1201 cgtgacgtta accggtaccg cagtggcagc gtcattctcc tcgcgcgtga tcgcgccgtt
     1261 ctcctgcatc gccgcgagca ccatattcct gcgcgcctgc gctgcttccg gattacgcaa
     1321 aggcgagtag tgcgcgggac tctgaatcat tcccgcgagc gtcgccgctt cggcgagcgt
     1381 gagatcgcgc agctctttcc caaagaacac ggacgcggct tccttcacac cacgcactgc
     1441 cacagcgcca cgttggccca aatagatctc gttgcaatac agcgcaaaga tgtcttcctt
     1501 cgagagacgc cgttcgagcg cgagcgatag catcgcctcg gcgtacttgc gctgcagcgt
     1561 cttctccggc gagagatacg tgttcttcac gagttgctgc gtgatcgtcg aaccgccctg
     1621 gcccaacttt tcatcacccg catttcgcag caacgcgcgc gcaagaccgc taac
//
LOCUS       DASWTX010001041         1504 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_142837, whole genome shotgun sequence.
ACCESSION   DASWTX010001041 DASWTX010000000
VERSION     DASWTX010001041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1504
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142837"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..333)
                     /locus_tag="VGD38_15895"
     CDS             complement(<1..333)
                     /locus_tag="VGD38_15895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729564.1"
                     /translation="MDLVNISRPRYINKLDQVQGLSDKERQQLQPVAEKFAFRTNDYY
                     QSLIDWNDPEDPIRRIVMPDIQELDEFGEMDASAEHSYTVRKGLEHKYGDTALLLVNN
                     VCGAYCRFC"
     gene            complement(410..>1504)
                     /locus_tag="VGD38_15900"
     CDS             complement(410..>1504)
                     /locus_tag="VGD38_15900"
                     /inference="COORDINATES: protein motif:HMM:NF014805.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HEY0729565.1"
                     /translation="PSYVLGGRAMAIVYDEESLDHYVRAAVGIAPDRPVLIDKFLEQA
                     VEFDVDVLADESDCVIAGIQEHIEEAGIHSGDSSCVLPAVRTDPEHVETMRLYTRKMA
                     HALGVRGLMNVQFAIKDHRVYVLEVNPRASRTVPFVSKATGVPLARIASLVMAGASLK
                     NFNLPDELTVSRYFVKSPVFPFGKFPEVDPVLGPEMHSTGEVMGIGETFGEAYGKAMT
                     AAGLKLPTSGTAFISVNHTDKGQAVLLARRLVRLGFKLMATQGTALRLREVGLEVEEV
                     FKVNEGRPNTVDHIKQREVALIINTPLGRVSHRDEQEIRQAALQYNVPCVTTMTGARA
                     IVEALAAKTINQSTVHSLQELHALRSRVAA"
BASE COUNT          313 a          429 c          423 g          339 t
ORIGIN      
        1 acagaaacgg cagtaagcgc cgcagacgtt attaaccagc agcaaagcag tgtcgccgta
       61 cttatgttcg agacctttgc gtactgtgta tgagtgctcg gcggaggcat ccatctctcc
      121 gaactcgtcg agttcctgaa tgtccggcat gacgattcgg cgaatcggat cttcaggatc
      181 gttccagtcg attagcgact ggtaatagtc gttggtgcga aaagcaaact tctcggcgac
      241 cggctgaagc tgctgtcgct ctttgtcgct caatccctgt acctgatcga gcttgttgat
      301 gtaccgaggc ctgctgatat tcacgagatc catgaggcta ctcctttgat cataatcgac
      361 cgtgggagga caattatttt tccaggtaaa tagtgagaag ttagaccggt tatgcggcta
      421 cgcggctacg cagtgcgtgc aactcctgta gcgagtgcac ggttgattgg ttgatggttt
      481 tggcggcgag agcttcaaca attgcgcgcg ctcccgtcat ggttgtgaca caggggacgt
      541 tgtactgaag agcggcctga cgaatctctt gttcatcacg atgcgagacg cggccaagcg
      601 gcgtgttgat gattagcgcc acctcgcgtt gcttgatgtg gtccacagtg ttcggacggc
      661 cttcattcac tttgaaaact tcttcgactt cgagccccac ttcgcgcagc ctcaacgccg
      721 tgccttgagt ggccatcagc ttgaagccca ggcggaccag ccggcgcgcg agtaacactg
      781 cctgcccttt gtcagtgtga ttgacgctga tgaaagcagt gccgctcgtt ggcagtttga
      841 gtccggcggc cgtcatcgcc ttgccgtaag cttcaccaaa ggtctcaccg atgcccatta
      901 cttctccggt cgaatgcatt tccggcccca aaaccggatc gacttccggg aattttccaa
      961 acggaaacac cggcgatttg acgaagtaac gcgatacggt cagttcgtcg ggcaggttga
     1021 aattcttgag actcgcgccg gccatgacca gcgaagcgat ccgcgcgagc ggaacaccag
     1081 tggctttcga aacgaacgga acggttcgcg aagcacgcgg atttacttcg agcacgtaaa
     1141 cgcgatggtc cttgatcgca aactgcacgt tcatcaaacc gcgcacgccg agcgcatggg
     1201 ccatcttgcg cgtgtacaaa cgcatggtct cgacgtgttc cggatcggtg cgtaccgccg
     1261 gcagcacgca tgacgaatcg ccggagtgaa tgcctgcttc ctcgatgtgt tcctgaatgc
     1321 cggcgatgac gcagtcgctc tcatcggcaa gcacatcgac gtcaaactcc accgcctgct
     1381 cgagaaactt gtcgatcagc accggccggt cgggtgcgat tcccacggcc gctcgcacgt
     1441 agtggtccag gctctcttcg tcgtaaacga tcgccatcgc gcgcccgccg agcacgtaac
     1501 tcgg
//
LOCUS       DASWTX010001042         3696 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_104847, whole genome shotgun sequence.
ACCESSION   DASWTX010001042 DASWTX010000000
VERSION     DASWTX010001042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3696)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3696)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3696
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104847"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2905
                     /locus_tag="VGD38_15905"
     CDS             <1..2905
                     /locus_tag="VGD38_15905"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEY0729566.1"
                     /translation="PDGARIAYVPLPRSFNAWKRYRGGTATPVYIANLSDSNVEKIPR
                     VDSNDFNPMWSAGDPRKIYFLSDRDGAITLYSYDTGSKKVSQAINNQGLDIKSASLST
                     GGGPDTIVYEQFGALNLYDLNSGKTKRVAVTINGDIPTVRPKYEKVGAGILNSALSPT
                     GARALFEARGEIITVPAEKGDVRNLTNTTGVADRDPAWSPDGKWIAYFSDESGEYALH
                     LRQQSGMGEVKKINLGNPPSFFYAPTWSPDSKKIAFADKRLNLWYVDIDKGTPIKVDT
                     SKRGLGFNASWSPDSRWIAYTKPVESWYSAVFIYSLEEAKSQQVTDGLSDASSAAFDK
                     NGKHLYFMASTDIGPKLSGFDMSSYPHQPTRNTYVMVLKKTDPSPLAPESDEEKPADE
                     KKGEAPGNKPAESDPNADPATAAAQPSPKPDDKKAPPRVTIDFDRISQRILALPIPAR
                     NFVGLATAKANTIFLFEVLPASPGVTGITVHKFDMEKRKLDKVLDGVRSFDLSANGEK
                     MLFRLAAPPTSTTGDSWFIASTTQPIKPGEGKIKTEDMEVYVDPRAEWQQMYRESWRI
                     QRDFFYDPNYHGLDLTATARKYEPYLAALTHRADLSYLFPEMFGELTVGHLYVQGGDV
                     PDPKRVPGGLLGADYEIENGRYRFAKIFDGENWNPQLRAPLTQPGVNVQPGEYLLAVN
                     GRNLTANENVYSFFQNTANKQIVIRVGPNPDGAGSREVTVVPVANENGLRTLAWIEGN
                     RRKVDQMSGGKLAYVWLPDTAGGGYTNFNRYYFAQLHKQGAVIDERFNGGGHAADYII
                     DYLKKPLNSYWAVRDGEDFRQPFGTLPGPKVMIINEYAGSGGDYMPWMFRRHGIGPLI
                     GKRTWGGLVGIGGYPVLIDGGSVTAPHFAFYSPEGEWEVENRGVSPDIEVEMDPKAWR
                     QGRDPQLEKAIEVAMAELQKNPPKPAKRPPYPNYHNGRSREETSGGGRGNRAP"
     gene            2989..3681
                     /locus_tag="VGD38_15910"
     CDS             2989..3681
                     /locus_tag="VGD38_15910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729567.1"
                     /translation="MKRLFWTVTLLLFFAPSLAAQNSLKPEASSESKLVYADFQNAEN
                     GRPVSKRGGQTRLNRYSQNSANPPQFRGMENADPPAPALARVTDEDRAAAFDYQMRIP
                     NEWQGVSMEVFGQPEKDGKLVADDVSEYKYITFRLFAKGPRMIRVELVTRGHGANLEG
                     GYPMADIRVQEGFNTYKLKLDSFNQPDWATRLDLKSEVLKKLTSVQIGVTCEKCRFEN
                     GTIVVDNIAFEK"
BASE COUNT          900 a         1057 c         1044 g          695 t
ORIGIN      
        1 acctgacggc gctcgcattg cctacgtgcc gctgccacgc tcgttcaatg cctggaagcg
       61 ttatcgcggc gggacggcga ctcccgttta catcgctaac ttgagcgatt cgaacgttga
      121 aaagatcccg cgcgttgact caaacgactt caatccgatg tggtccgcgg gcgaccctcg
      181 caagatctat ttcctgtctg accgcgacgg cgcaataacc ctttactcct atgacaccgg
      241 gtcgaagaag gtgtcgcagg ccatcaacaa ccagggacta gacatcaagt cggcttcact
      301 ttctaccgga ggcgggcctg acacgatcgt ttacgagcaa ttcggggcgc tcaatcttta
      361 cgatctgaat tcgggtaaaa ccaagcgcgt cgccgttacc atcaacgggg atattcccac
      421 ggtgcggccg aagtacgaga aggtcggcgc aggaatcttg aactcggccc tctctccgac
      481 cggcgcccgt gctctctttg aagcccgcgg ggaaattatc accgtgcccg cggagaaggg
      541 tgacgtgcgc aacctgacca acacgacggg cgtggccgac cgcgatccgg cgtggtcgcc
      601 cgacggtaaa tggatcgcgt acttctcgga cgagtcaggg gaatacgcgc tgcacctcag
      661 acagcaaagc gggatgggtg aggtcaagaa gatcaacctt ggcaacccgc catcgttctt
      721 ctacgcgccc acctggtcac cggacagcaa aaagattgct ttcgcggaca agcggctcaa
      781 cctgtggtac gtggacatcg acaagggtac gccaattaaa gttgacacct ccaagcgcgg
      841 cttggggttc aacgccagtt ggtcacccga tagccgctgg attgcttaca caaaaccggt
      901 cgagtcgtgg tacagcgcag tctttatcta ttcgctcgag gaggcgaagt cgcagcaggt
      961 aactgacggc ctgagcgatg cgagttctgc cgccttcgac aaaaatggca agcacctcta
     1021 cttcatggcg agcacagaca ttggtccaaa gctctccggc ttcgacatgt cgagctatcc
     1081 gcatcaaccc acgcgcaaca cttacgtgat ggtgctgaag aaaaccgacc cttcaccgct
     1141 cgcacccgaa agcgatgaag agaaaccagc cgacgaaaag aaaggtgaag caccgggcaa
     1201 caagcccgcc gaaagtgatc cgaacgccga tccggcaacg gccgctgctc aaccgagccc
     1261 taagcccgat gataaaaaag caccgccgcg agtgaccatt gatttcgatc gcatcagcca
     1321 gcgcattctg gcgttgccta taccggcccg caacttcgtc ggactggcca cagccaaagc
     1381 gaatacgatc ttcctttttg aagtcctgcc ggcttcaccc ggtgtgacag gaattacggt
     1441 tcacaaattc gacatggaaa agcgcaagct cgacaaagtg cttgacggcg tccgcagctt
     1501 tgacctttcg gccaatggtg aaaagatgct cttccgtttg gccgcgcccc cgacttccac
     1561 aaccggcgac agttggttca ttgcttccac cacacagcca atcaagcccg gcgaaggaaa
     1621 aatcaaaacc gaagatatgg aggtatatgt cgacccgaga gccgagtggc aacagatgta
     1681 tcgcgagtca tggcgcattc agcgtgactt cttctatgac ccgaactatc acggcctcga
     1741 cttgacagct acggcccgaa aatacgagcc ctacttggcg gcgcttacgc accgtgctga
     1801 cctgagttat ctctttccgg aaatgttcgg cgagctgacg gtgggccatc tctacgtgca
     1861 gggaggcgac gtgcccgatc cgaagcgcgt gcccggagga ttgctgggcg ccgactatga
     1921 gattgagaac gggcgctatc gattcgccaa aatattcgac ggcgaaaact ggaacccaca
     1981 actgcgcgcc ccactgacgc agccgggggt aaacgtgcaa ccaggcgagt acctgctcgc
     2041 ggtgaatggt cgcaatctta cggcgaatga gaacgtctac agtttctttc agaatacggc
     2101 caacaagcag atcgtgatcc gcgttggacc aaacccggac ggcgccggct cgcgcgaagt
     2161 caccgtcgtg ccggtggcga atgaaaacgg cttgcgtacg ctggcctgga tcgaagggaa
     2221 tcgtcgcaaa gtggaccaga tgagcggcgg taagctcgcc tacgtctggc tgcccgacac
     2281 tgccggaggc ggctacacca atttcaaccg ctactacttt gcacagcttc acaagcaggg
     2341 cgcggtaatt gacgagcgct tcaatggtgg cggccacgcg gcagactaca tcatcgatta
     2401 ccttaaaaag ccgctcaaca gctactgggc agtgcgcgac ggcgaagatt ttcgccaacc
     2461 gttcggtaca ctcccgggcc ccaaagtgat gatcattaac gagtatgccg gcagtggcgg
     2521 cgattacatg ccttggatgt ttcgccggca tggcatcggc ccgctcattg gaaagcgcac
     2581 gtggggtggg ttggtaggca taggtggtta tcccgtgctg atagacggtg gctcggtgac
     2641 tgcgccgcac tttgccttct acagccctga aggcgagtgg gaggtcgaaa accgcggtgt
     2701 ctcgcccgac atcgaggtcg agatggaccc gaaggcctgg cgccagggac gcgatccgca
     2761 actggaaaag gctatcgaag tggcgatggc agaacttcag aagaacccac ctaaaccggc
     2821 aaagcggccg ccctacccga actatcacaa cggacgcagc cgcgaggaaa cgagtggtgg
     2881 aggtcgtggc aaccgcgcgc catagtgcgt ttgaccgaag caggcgagac cagagcgtcc
     2941 tcgcctgcgc tttctcgaaa acaaaaattt tacaaaagga gaaatgcgat gaagcgtctg
     3001 ttctggacag taactctgtt gctattcttc gcgccgtcac tcgctgcaca aaattcgtta
     3061 aagcctgaag catcgagcga gtcgaaactt gtctatgccg atttccagaa cgcagaaaac
     3121 ggccggccgg tcagtaaacg cggcggccag actcgcttaa atcggtattc acagaattcc
     3181 gccaatcctc cgcaattccg tggaatggaa aacgccgacc ctcccgcgcc ggcactcgcg
     3241 cgagtcactg acgaagatcg agccgcagcg ttcgattatc aaatgcgaat accaaacgag
     3301 tggcagggag taagtatgga agtattcggt cagccggaga aagacgggaa actcgtggcg
     3361 gacgacgtta gcgaatacaa gtacatcacg ttccggctgt tcgcgaaggg accgcgaatg
     3421 atccgcgtcg aattagtcac ccggggccat ggtgcaaatc tggagggcgg ctatccgatg
     3481 gctgacatcc gcgtgcaaga gggcttcaat acctacaaac tcaaactcga ttcattcaat
     3541 cagccggact gggccactcg tctggatttg aagagcgagg ttttgaagaa actgacttca
     3601 gtgcagatcg gtgtgacctg cgaaaagtgc agattcgaga acggcacgat cgtggttgac
     3661 aacatcgcat tcgaaaaatg atccgtaaca atgtga
//
LOCUS       DASWTX010001043         4425 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_345357, whole genome shotgun sequence.
ACCESSION   DASWTX010001043 DASWTX010000000
VERSION     DASWTX010001043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4425)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4425)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4425
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345357"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..137
                     /gene="rpsK"
                     /locus_tag="VGD38_15915"
     CDS             <1..137
                     /gene="rpsK"
                     /locus_tag="VGD38_15915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEY0729568.1"
                     /translation="VKGPGGGRESAIRAIANAGIRVTTIRDTTPIPHNGCRPPKRRRV
                     "
     gene            352..990
                     /gene="rpsD"
                     /locus_tag="VGD38_15920"
     CDS             352..990
                     /gene="rpsD"
                     /locus_tag="VGD38_15920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002614801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEY0729569.1"
                     /translation="MARYRDAVCRLCRREGAKLFLKGDRCYKPACPIEKRGTQPPGQH
                     GNSLRRGKALVGYGQQLREKQKVKRIYFILEGQFRNYFERAARMKGITGENLLFLLER
                     RLDNAVYRAGFSTSRRQARQLVNHGHILVNDRKVDIPSYQVKPGDTISVRELSRKNVH
                     IEGAWQTASGRGRPSWITADGGDMSARVASLPVRDDIDRMINEQLIVELYSK"
     gene            1018..2067
                     /locus_tag="VGD38_15925"
     CDS             1018..2067
                     /locus_tag="VGD38_15925"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF003513.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEY0729570.1"
                     /translation="MDQNNLWQGFQMPRRLAADAETLTERYGRFSAQPFERGFGTTVG
                     NSLRRALLSSIEGAAITAVKIEGVEHEFSSIKGVVEDATDVILNLKQVPFKLHSAEPK
                     TLRINKEEAGEVTAADIEADADVEILDPTVHIATVSEGGSLRVEMRLKRGRGYVSADR
                     NFDEDLSLGYIPIDSVHTPVKKVNYNVEAARLGQNTEFDKLTIEVWTDGSVKPEDSIG
                     LAAKLIKDHMSIFINFEEDTDDYAYAKMERPPLPRNDQLDRSVDELELSVRSYNCLKN
                     ADIRTIRDLVQRTEREMLATKNFGKKSLNEIKEILNGMGLDFGMEFDEQGNPIPGTGG
                     RDGADLSDFEGDEEQ"
     gene            2076..2531
                     /gene="rplQ"
                     /locus_tag="VGD38_15930"
                     /pseudo
     CDS             2076..2531
                     /gene="rplQ"
                     /locus_tag="VGD38_15930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660847.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005762 - mitochondrial large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
     gene            2676..3245
                     /gene="accB"
                     /locus_tag="VGD38_15935"
     CDS             2676..3245
                     /gene="accB"
                     /locus_tag="VGD38_15935"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HEY0729571.1"
                     /translation="MPARKEQNDNAPKASVNMEELRELIELLRDNGLAELELERADFR
                     VRLRREGFSFAGDSSAADNFTITEMVKNALGANPYPSGVVTPVPAAPSPAPAHPGAEA
                     STAASADQDLHIISSPSVGTFYRSPSPTAEPFVKIGSNVEPASVVCIIEAMKLMNEIQ
                     AEASGEVVKIYVENGQPVEYGQPLFGIRS"
     gene            3301..>4425
                     /locus_tag="VGD38_15940"
     CDS             3301..>4425
                     /locus_tag="VGD38_15940"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF006367.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEY0729572.1"
                     /translation="MAFEPRKFKKILIANRGEIACRIIWTCKEMGIKTVAVHSDVDRE
                     SLHVRFADEAACIGPAPSAQSYLNIPAIISTAEIFNVDAIHPGYGFLAESPYFAEICD
                     ACNIKFIGPSANVIRMMGDKIEARRVMHEAGLPVVPGSPDAVTSEEEGLKLAREIGFP
                     LMVKASAGGGGRGMRIVRSEKELGKALETASTEAAAAFNDGSVYIERYIEQPRHIEIQ
                     VLADEYGNCIHLGERECSIQRRHQKLMEEAPSTVLTPELRTKMGEAAVAACKKLGYSS
                     AGTVEFLLDAQGNFYFMEMNTRIQVEHPVTEMVTLADIVRNQIRIAEGEPLGYTQDDL
                     LIVGHAIECRINAENPETFAPSPGPITAFYLPGGPGVRVDT"
BASE COUNT          988 a         1243 c         1341 g          853 t
ORIGIN      
        1 gtgtgaaagg cccgggcggc ggccgtgaat cagccatccg cgcgattgcc aacgccggca
       61 ttcgcgtgac cacgattcgc gatacgacgc cgattccgca caacggttgc aggccgccaa
      121 agcggcgacg agtttaaggc attgttgatt gtcgattgtc gattgccgat ttgaaagccg
      181 cgcggcaacc tacaatcggc aatcgaaaat cgacaatgaa ataacccaaa ggatgaaggg
      241 tccggtgtcg tcaaggttgc aggccgaagt agatcggcaa tcagcaatcg aaaattggca
      301 atgacctgac ctgtaaactt ttccgtctaa cacagactgg aggcaaaata gttggctagg
      361 tacagagatg cagtgtgccg cctttgccgt cgcgagggcg caaagctttt tttgaagggc
      421 gatcgttgtt acaaacccgc ttgcccgatt gaaaaacgcg gtactcaacc gcccgggcag
      481 catggcaact cgctgcgacg cggcaaggcg ctggtcggtt acggccagca gttgcgcgag
      541 aagcaaaagg tcaagcgtat ctacttcatt ctcgaagggc agtttcgcaa ctacttcgaa
      601 cgcgccgctc gcatgaaggg gattaccggc gagaacctcc tgtttctttt ggagcggcga
      661 ctggacaatg ctgtctatcg cgccggtttc tccacttccc gccgtcaggc cagacagctg
      721 gtcaatcacg gtcacattct cgttaacgat cgcaaagtcg atattccctc ttaccaggtg
      781 aaacccggcg acacgatcag cgtgcgcgag ctcagccgca agaacgtcca catcgaaggc
      841 gcgtggcaaa cggcatcagg ccgtggccgg ccctcgtgga tcacggctga cggcggtgat
      901 atgagtgcgc gtgtggccag tctgccggtg cgcgacgaca tcgaccgcat gatcaacgaa
      961 cagttaatcg tcgaacttta tagcaagtaa tttttgggga ctcgaacgct tatggctatg
     1021 gatcaaaata atctttggca gggatttcaa atgccgcgcc ggctcgcggc agacgcagag
     1081 acgctgacgg aacgctacgg ccgtttttcg gcccagccgt tcgaacgggg cttcggcacc
     1141 accgtaggga actcgcttcg ccgtgcgctt ctttcctcga ttgagggcgc agcaattacg
     1201 gcagtcaaga tcgaaggtgt ggagcacgag ttctcctcga tcaagggcgt ggtggaagat
     1261 gccaccgacg tgatcctgaa cttgaagcag gtgcccttca agctgcacag tgccgagccg
     1321 aaaactcttc gcatcaacaa agaagaagca ggcgaagtca ctgccgcgga tatcgaagct
     1381 gatgccgacg tcgagattct cgacccgact gtgcacatcg cgaccgtgag tgaaggtgga
     1441 tcgctgcgcg tcgaaatgcg cttgaagcgt ggacgtggtt acgtctccgc cgatcgcaat
     1501 ttcgacgaag acctgtcgct cggttacatc ccgatcgatt cggtccatac gccggtcaag
     1561 aaagtcaact acaacgtcga agccgcgcgt ttgggacaga acaccgaatt cgacaagctg
     1621 acgatcgagg tttggacgga tggctcggtc aagccggaag actcgatcgg tctcgccgcg
     1681 aagttgatca aggaccacat gtcgatcttc atcaacttcg aggaagacac cgacgactac
     1741 gcttacgcca agatggagcg cccgccgttg ccgcgcaacg atcagttgga tcgctcggtc
     1801 gacgagctgg agctttcggt ccgttcgtac aactgcctga agaacgccga cattcgcacc
     1861 atccgcgacc tggtccaacg caccgagcgc gagatgctgg cgacgaagaa cttcggcaag
     1921 aagtcgctca acgagatcaa agagatcctc aacggcatgg gtctcgactt cggtatggaa
     1981 ttcgacgaac aaggtaatcc gattccgggc accggcggtc gcgacggcgc ggacctttcg
     2041 gatttcgaag gtgacgagga acagtaggaa cagtcatgcg acacttaaag gcacatcgca
     2101 aactgggccg gaccagcgaa catcgcacgt cgatgttgcg caatctggcg acgtcgttaa
     2161 tcaactcccg cgaagagcgc atcactacga ctttgccgaa agcaaaggag cttcgtcctt
     2221 tcgtcgagcg cgccatcacg ttgtcgcgcc gcgcgcgcaa cttgtccgat gacgatgctc
     2281 aggcgctgca cctgcgccgt caggcagcgg gctttttcca cgccggcaac acggcggttt
     2341 catccctgac gggcaagcgc ggacagcttc gtccggaacg caccgcgggt gtggctgcgt
     2401 tgcgccgcct gttcggcgaa ctcggcgagc gttacaagga tcgtcccggc ggttacacgc
     2461 gcatcctgaa gctcggccat cgcgatggcg acgcggctga gctggccatc atcgagcttg
     2521 tcgacaatcc gcgcgaggtt gaggctgcgg aagctgagaa gaaacgtaag gcttcggctg
     2581 cgaagaagaa gtcttccaag aaagcggcga agaccgaatc cacggatgac acagcgagcg
     2641 cagagtaatc tgcgtaatgt ggttggccta aacgcatgcc tgcacgcaaa gaacagaacg
     2701 acaacgcccc aaaagcttcc gtcaacatgg aagagctgcg cgaactgatc gagttgctcc
     2761 gcgacaacgg tttggctgag ctcgagctcg aacgcgcaga ctttcgcgta cgattgcgcc
     2821 gcgagggttt ttcgtttgcc ggcgacagca gcgcggcgga caatttcacc atcaccgaga
     2881 tggtgaagaa tgcattaggc gcgaacccgt atccgtcggg tgttgtaact ccggtacctg
     2941 cggcgccgag tccggctccg gcgcatccgg gcgctgaagc gtcgaccgcg gcgtcagcgg
     3001 accaggatct ccacatcatc tcttctccga gtgtcggcac gttctatcgt tcgccgtcgc
     3061 cgaccgccga gccttttgta aagatcggca gcaacgtcga gccggcgagc gtcgtgtgca
     3121 tcatcgaagc gatgaagctg atgaacgaga tccaggccga ggcgagcgga gaagtcgtca
     3181 agatttatgt tgagaacggc cagccggtag agtacggcca gccgttgttc ggcataagaa
     3241 gttaacaacc gtttttcgtt ttcctggagt gcggtgacct gttcaccgca ttactgttta
     3301 atggccttcg aaccgcgcaa gttcaaaaag atactgatcg ccaaccgtgg cgagatcgcc
     3361 tgccgcatca tctggacgtg caaggagatg ggcatcaaga cggtcgcggt ccacagcgac
     3421 gtcgatcgcg agtcgctgca cgtgcgtttc gccgatgaag ctgcctgtat tggaccagcg
     3481 ccgtccgcgc agagttacct gaacattccc gccatcatca gcacggccga gatcttcaac
     3541 gtcgatgcaa ttcatccggg ttacggcttt ctcgcggagt cgccttactt cgccgagatc
     3601 tgcgacgcgt gcaacatcaa gtttattgga ccatcggcga atgtcattcg catgatgggc
     3661 gacaagatcg aagcgcgccg cgtgatgcat gaggcgggtc tgccggtcgt gccgggaagt
     3721 cctgatgcgg tcacttcaga agaagaaggc ctgaaactcg cgcgcgagat cgggtttccg
     3781 ttgatggtga aagcgtccgc gggtggaggc ggtcgcggca tgcgcatcgt gcgttccgaa
     3841 aaggaactgg gcaaagcgct cgaaacggcg tcaaccgaag cggctgcggc attcaacgac
     3901 ggcagcgttt acatcgaacg ctacatcgag cagccgcggc acatcgagat ccaggtgctc
     3961 gcggatgagt acggcaactg tattcacctc ggcgagcgcg agtgctcgat tcagcggcgc
     4021 catcaaaagt tgatggaaga agcgccctcg actgtgttga cgccggagct gcgtacgaag
     4081 atgggcgagg cggcggttgc tgcgtgtaag aagctcggtt attcgagtgc gggcacggtc
     4141 gagtttctgc tggacgcgca gggcaatttc tatttcatgg aaatgaacac gcgtatccag
     4201 gtcgagcatc cggtcacgga gatggtgacg ctcgcggaca tcgtgcgtaa ccagattcgc
     4261 attgccgaag gcgagccgct cggttacacg caggacgatc tgctgatcgt tgggcacgcg
     4321 atcgagtgcc ggatcaacgc cgagaatccg gaaacatttg cgccgtcgcc gggaccgatt
     4381 accgcgttct acttgcctgg cgggccgggt gtccgcgtcg acacg
//
LOCUS       DASWTX010001044         2197 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_345417, whole genome shotgun sequence.
ACCESSION   DASWTX010001044 DASWTX010000000
VERSION     DASWTX010001044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2197
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345417"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1640
                     /locus_tag="VGD38_15945"
     CDS             <1..1640
                     /locus_tag="VGD38_15945"
                     /inference="COORDINATES: protein motif:HMM:NF014071.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HEY0729573.1"
                     /translation="FGVGERVVASGEVLQALDDGELEKLVKKLKRANVESVAVSFLFS
                     FLHPQHEEQVERGIAALGLPVSISSRILPEYREYERTSTVVINAYLQPLMGRYLKRLS
                     SGFGLRVMQSSGGSISAEMAAVEPVRTILSGPSGGVVGALRAAQSAGLENIITFDMGG
                     TSTDVALCDGGAIRTTTEATVAGLPVAVSVLDIHTVGAGGGSIARVDEGGSLRVGPDS
                     AGADPGPACYGRSMLPTVTDAHVVLGHFGGGGLLGGEFKLDANRAREAMQQLANDLSC
                     VSGKRSSVVAAAEGILSVANTNMERALRHISVERGHDPRQFALLPFGGAGGLHAVELA
                     RALRIPTVIAPPAPGALSAVGVMVADVIKDQSRTVMFAKDPKQIARLTKVFAEMEREA
                     AALLRSEGFPRAKQRHERSLAMRYRGQSFELEVRNTTGDIAASFHRAHRERYGYAQEN
                     SEIEIVSARLRSFGLVPKLPVREIAVSSGTAKPHGSVMTYFGGRKVNAAIYKRDELRG
                     GVKLKTPCIVTEYSATTLIPGDAKARVDTFGNILIEL"
     gene            1687..>2197
                     /locus_tag="VGD38_15950"
     CDS             1687..>2197
                     /locus_tag="VGD38_15950"
                     /inference="COORDINATES: protein motif:HMM:NF014585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase B/oxoprolinase family protein"
                     /protein_id="HEY0729574.1"
                     /translation="MKKARFDPTTLEIYRALFTSVAEEMGVALRRTAFSPNIKERRDY
                     SCAVFEANGRVIAQGDHMPVHLGSMPMAVAAALKEIKVAPGDVVALNDPFAGGTHLPD
                     VTLVMPVVKGKQILFYVANRAHHADIGGATPGSMGLATDIYGEGIRIPPIRLVRNGVL
                     DHDTMRLLLA"
BASE COUNT          421 a          621 c          723 g          432 t
ORIGIN      
        1 ggtttggagt cggagagcgt gttgttgcgt cgggtgaggt gttgcaggcg ctcgacgacg
       61 gcgaacttga gaagctggtg aagaagctga agcgcgcgaa cgttgagtcc gtggctgtgt
      121 cgttcctctt ttcttttctg cacccgcaac acgaagaaca agtcgagagg gggattgcgg
      181 cgctcgggct gcctgtgtcg atttccagca ggatactgcc tgagtatcgc gagtacgaac
      241 gcacgtcgac ggttgtcatc aatgcgtact tgcagccgtt gatggggcgc tacttgaaac
      301 gtctgagttc ggggtttggg ttgcgcgtca tgcaatcgtc gggcgggagt atctcggctg
      361 agatggcggc tgttgagccc gtgcgaacga tcctttctgg gccgtctggc ggcgttgtgg
      421 gcgcactacg agccgcgcag tctgcgggat tggaaaacat catcacgttc gacatgggcg
      481 gcacgtcaac ggacgttgcg ttgtgcgatg gcggcgccat tcgcaccacg accgaagcaa
      541 ccgtcgccgg gttacccgtc gctgtttcgg tgctggacat tcacaccgtc ggcgcgggcg
      601 gcggctcgat cgcgcgcgtc gacgaaggcg gttcgctgcg tgttggacca gattcagccg
      661 gcgccgatcc cggtccggcg tgttacggcc gatcgatgtt gccgaccgtg acggatgcgc
      721 acgtcgtgtt gggccatttc ggcggcggcg gtcttcttgg cggcgagttc aagctcgacg
      781 cgaatcgcgc gcgcgaggcg atgcagcagt tggcgaatga tttgagttgc gtatccggca
      841 aacgttcgag tgttgtggct gcggctgaag gaatcttgtc ggttgcgaac accaacatgg
      901 aacgcgcgct gcgccacatt tcagtcgaac gcggccacga tccgcgacag tttgcgctgt
      961 tgccatttgg cggcgcgggt ggtttgcacg cggttgagct cgcgcgtgcg ttgcgtattc
     1021 ccactgtgat cgcgccaccg gcgccgggcg cgttgtcggc ggtgggtgtg atggttgcgg
     1081 acgtgattaa ggatcagagc cgcacggtga tgttcgcgaa ggatcccaag cagatagcgc
     1141 gcctcacaaa agtgtttgcc gagatggaac gcgaagccgc ggcgctgttg cgttccgaag
     1201 gttttccgcg agcgaaacaa agacacgaac gctcgctcgc gatgcgctac cgcggacagt
     1261 cgtttgaact cgaagtcaga aacacgaccg gcgacatcgc ggcgagtttt catcgtgcgc
     1321 accgcgaacg ctacggttac gcgcaggaaa acagcgagat cgagatcgtg agcgcgcgtc
     1381 tgcgttcgtt tggtttggtg ccgaagctgc ccgtgcgcga aatcgcggtg tcatcaggaa
     1441 cagcaaaacc acacggcagc gtcatgactt acttcggcgg gcggaaagtc aacgccgcga
     1501 tttacaaacg cgacgaactg cgcggcggcg ttaagctgaa gacgccctgc atcgtcaccg
     1561 aatattccgc gaccacgctg atacccggcg acgcaaaggc gcgagtggac acgtttggaa
     1621 acatcctgat tgaactctag gcggcgctga agcgtgagaa agcgggtgaa accatttaag
     1681 aaaaacatga aaaaagcccg tttcgatccg accacgctcg agatttaccg cgcactcttc
     1741 acttcggtgg cggaagagat gggcgtcgca ctgcgccgca cggcattttc accaaacatc
     1801 aaggagcgcc gcgattactc gtgcgccgtg ttcgaagcca acggccgcgt gatcgcgcag
     1861 ggcgatcaca tgccggtcca tctcggctcg atgccgatgg ctgtcgccgc tgcgttgaaa
     1921 gagatcaaag tcgcaccggg cgacgtcgtc gcactcaacg atccgtttgc gggcggcacg
     1981 cacctacccg acgtcacact cgtgatgccc gtcgtcaaag gcaaacaaat cctgttctac
     2041 gtcgcgaatc gcgcgcatca cgcggacatc ggcggtgcga cgccggggtc gatgggcctc
     2101 gccaccgaca tctacggcga aggcatccgc attccgccaa tccggctcgt gcgcaacggc
     2161 gtgttggacc acgacacgat gcgtctgctg ctcgcga
//
LOCUS       DASWTX010001045         4427 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_251086, whole genome shotgun sequence.
ACCESSION   DASWTX010001045 DASWTX010000000
VERSION     DASWTX010001045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4427)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4427)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4427
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251086"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..899
                     /locus_tag="VGD38_15955"
     CDS             <1..899
                     /locus_tag="VGD38_15955"
                     /inference="COORDINATES: protein motif:HMM:NF013279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEY0729575.1"
                     /translation="IFGLILLVIVLVPGIGLKINGQRAWIKVPGIGQFQPSEFVKVTT
                     AMMLARYFGKNRVQALTLREMIVGGLILALPIGLILLEPDVGSVLTYIPILAVVLFLS
                     AIKLRYVIAASVLAVVMIPAAYWIGVKTGYVKGYQQERINVILDPENADRRGIGYHTW
                     QSILTVGEGGLIGSRSSVEYSQSGLKFLPEPHTDFIYAVLAENTGFVGCILVLLAYVV
                     LVSRLITGARRASDRMGMLFIMAFVGGLSFQIFINIGMALGISPVIGVPLPLMSAGLA
                     SLIATFIAIGFAISVQLRRFVN"
     gene            complement(896..1504)
                     /locus_tag="VGD38_15960"
     CDS             complement(896..1504)
                     /locus_tag="VGD38_15960"
                     /inference="COORDINATES: protein motif:HMM:NF016176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEY0729576.1"
                     /translation="MLKKTLLVVLLFAITAIAQQTAPTGTHPIDNAHSNVGFSVPILG
                     GLSQVKGKFTDFAIVLNHDEKDITKSSVSVVIKATSIDTGIERRDAHLRNADFFDVEK
                     FPEITFKSERIEKKGKQFIAHGPLTMHGVTKQIALPFTITGTFKNPANNKTSMGYSAK
                     MVLNRKDFGINYSRQDNPTFVGDEITVEIELVTRALDAKAGS"
     gene            complement(1498..2175)
                     /locus_tag="VGD38_15965"
     CDS             complement(1498..2175)
                     /locus_tag="VGD38_15965"
                     /inference="COORDINATES: protein motif:HMM:NF014724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HEY0729577.1"
                     /translation="MDSTISALAKKLWDYHRLNHQLAPADAILVLCSHDERVAERGAQ
                     LFLEGYAPLLIFSGGQGAITQRLWNEPEAERFARIAMRMHVPHDAILIESKSTNTGEN
                     VQFTRKLLGERGIDPETFIVVQKPYMERRSYATFLRYWPEKQVVVTSPQASFADYLAE
                     YTHSSLTPDDVVGIMCGDLQRIRFYPELGYQIAQEIPDDVWHAFEQLVEAGYDKYLIR
                     EKETQKC"
     gene            complement(2180..2830)
                     /locus_tag="VGD38_15970"
     CDS             complement(2180..2830)
                     /locus_tag="VGD38_15970"
                     /inference="COORDINATES: protein motif:HMM:NF018446.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022841 - potassium ion leak channel
                     activity [Evidence IEA];
                     GO_process: GO:0071805 - potassium ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HEY0729578.1"
                     /translation="MDKDEPETGLSFERVVFFSDAVFAIVITLLVLELKVPHITEHTD
                     SALRHALFGLAPRVIGFVVSFLIIGVMWMEHHRIFRYIDNYNAGLLWRNLLLLLCVSF
                     VPFPTALFSENFWSRTAFILYTGSFGLVATAKLWIWRHAVTSGLLKKNVGPELERRIS
                     RRSLAVPLACALAIALSFVSVLIAPIAFALIPVFARVLDPTTKKATDYTDPVEESA"
     gene            3015..>4427
                     /locus_tag="VGD38_15975"
     CDS             3015..>4427
                     /locus_tag="VGD38_15975"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEY0729579.1"
                     /translation="MKNTISLLLLLANLLSFTAFGQTSVETQIRRVENGLLPAVLIKG
                     DQPWSLEERMKHWKVPGLSIAVVKDFKVEWARSYGIKDIDTKEPVTTETLFQAGSISK
                     PVAAMVALKRVQQGKISLDENINNKLVTWKLPDNEFTAKKKVTLANLLSHTGGLTVHG
                     FPGYASGEKIPTLPQVLDGTEPANTAAVRVDMEPGTKFRYSGGGSTIAQLAIMDIEKK
                     PYPEIAKETVLGPLNMTNSTYSQPLPDDWRKKAASGHRGDGALVAGKIHVYPEMAAAG
                     LWTTPTDLAKFGIEVQLSYAGKSNKVLPKELIDKMVTPFMENVGLGFFIDKRGNSVYF
                     GHDGADEGFRASMLMHRDKGYGVVVMVNSDNGQIMGEVLRGVAYAYQWDEFLPAVNEI
                     ISLDATKLDEYTGRFQINPDRILTVAREEGKLVVSPTADVKFELLPVSENTFIRREQN
                     LKYTFVKSAGGVNEMKVTFPA"
BASE COUNT          964 a         1291 c         1216 g          956 t
ORIGIN      
        1 acattttcgg tctgatcctg ctcgtgatcg tgctcgtgcc gggtatcggt ttgaagatca
       61 acggccagcg cgcgtggatc aaggtgcctg gtatcggtca gtttcagccg tctgaatttg
      121 tgaaagtgac gacggcgatg atgctggcgc gttacttcgg aaagaatcgc gtgcaggcgt
      181 tgacgcttcg cgagatgatc gtcggagggt taatactcgc gctgccgatc ggactgatac
      241 tgctcgaacc cgacgtcggt tcagtgttga cgtacatacc gattctcgcg gtggtgctgt
      301 tcttgtcggc gatcaaattg cgctacgtga tcgcggcttc ggtgctggcg gtggtgatga
      361 ttcccgcggc gtactggatc ggagtcaaaa ccggttacgt aaaagggtat cagcaggaac
      421 gcatcaacgt gattctcgat ccggagaacg ccgatcggcg cggcatcggg tatcacacgt
      481 ggcaatcgat cctcactgtc ggcgaaggcg gactgatcgg ctcgcgctcg tcagtcgaat
      541 actcgcagag cggattgaag tttctgcccg agccgcacac cgatttcatc tacgcggtgc
      601 tcgcggaaaa cacgggtttt gtcgggtgta tcttggtgtt acttgcttac gtcgtgctgg
      661 tgtcgcgttt gatcaccggc gcgcggcgcg cgtctgaccg catgggaatg ctcttcatca
      721 tggcgttcgt cggcggcctg tcgtttcaga tcttcatcaa catcggcatg gcgctcggca
      781 tctcgcccgt gatcggcgtg ccgttgccgt tgatgagcgc cggccttgcc tcgctgatcg
      841 ccacgtttat cgcgatcggg tttgcgatca gcgtgcagtt gcgccggttt gtgaactagg
      901 aacccgcttt cgcgtctaac gcgcgcgtca ccaattcaat ctccacagtg atttcgtcgc
      961 caacgaacgt cggattgtcc tggcggctgt agttgatccc gaagtctttc cggttcaaaa
     1021 ccatcttcgc cgagtaaccc atactcgtct tgttgttcgc cgggttcttg aacgtgccgg
     1081 tgatcgtgaa cggcagcgcg atctgttttg tcacgccgtg catcgtcaac ggaccgtgcg
     1141 cgatgaactg cttgcctttc ttctcgatgc gctcgctctt gaacgtgatc tcgggaaact
     1201 tctcgacgtc gaaaaagtct gcattgcgca ggtgcgcgtc tcgtctttca attccggtgt
     1261 cgatactcgt cgctttgatc acgacgctga ccgacgattt cgtgatgtcc ttctcgtcgt
     1321 gattaagcac gatcgcaaag tcggtgaact tccccttaac ttgcgacaag ccgccgagga
     1381 tcggcactga aaaaccgaca tttgaatgag cgttgtcgat cgggtgcgtg cccgtcggcg
     1441 cagtctgctg tgcgattgcc gtgatggcga acaataaaac aaccaggagc gttttcttca
     1501 acatttctgt gtttcctttt ctcggatcaa atatttgtcg taaccagcct caaccaactg
     1561 ctcgaacgcg tgccaaacgt cgtccgggat ctcctgcgcg atctgatagc cgagctcagg
     1621 ataaaacctt atccgttgca gatcgccgca catgatgccg accacgtcgt cgggcgttag
     1681 cgaactgtgc gtgtactcag cgaggtagtc tgcaaacgac gcctgcggtg aagtcaccac
     1741 gacctgtttc tcgggccagt accggagaaa cgtcgcataa ctgcgccgct ccatgtacgg
     1801 cttttgcacg acgataaacg tctccggatc gatgccgcgt tcgccgagta acttgcgtgt
     1861 gaactgaacg ttctcgccgg tgttggtcga cttcgactcg atcaggatcg cgtcgtgcgg
     1921 cacgtgcatg cgcatcgcga tgcgcgcgaa gcgttccgct tcaggttcgt tccagagccg
     1981 ttgcgtgatc gcgccctgcc caccggaaaa gatcagcagc ggcgcgtagc cttcgagaaa
     2041 caactgcgcg ccacgttccg ccacgcgttc atcgtgacta cacaacacga gaatcgcgtc
     2101 cgccggcgcg agttgatgat ttaaccgatg ataatcccag agttttttcg caagcgcgct
     2161 aatggttgag tccatactct taggccgact cctccaccgg atccgtgtaa tccgtggcct
     2221 tctttgtcgt cggatcgagc acgcgcgcaa acaccggaat caacgcaaac gcgatgggcg
     2281 cgatcagcac actcacaaac gacaacgcga tcgcgagcgc acaagctaac ggcaccgcca
     2341 gcgaacgccg cgaaatacgc cgttcgagtt ccggtccaac attcttcttc aaaagcccgc
     2401 tcgtcaccgc atgccgccaa atccaaagct tcgccgtcgc cactagccca aagctgcccg
     2461 tgtaaagaat gaacgccgtg cggctccaga aattctcgct gaacaaagcc gtcggaaacg
     2521 gcacgaacga cacgcacagc agcagcaaaa gatttcgcca caacaaaccg gcgttgtagt
     2581 tgtcgatata acgaaagatg cggtggtgct ccatccacat cacgccgatg atcagaaaac
     2641 tgaccacgaa cccgatcacg cgcggagcca gtccgaacag cgcatgacgc agcgccgaat
     2701 ccgtgtgctc cgtgatgtgc ggcaccttga gctcgagcac cagcaacgtg atcacgatcg
     2761 caaacaccgc gtcgctgaaa aacacgaccc gctcgaagct cagacctgtt tccggttcat
     2821 ctttgtccat gcatcacact ctcccgactc taatgtctcc attcaacatc aactcgcagg
     2881 ctttgaaggc atactcctcg aaaaactcga aacgcgaggc gtggatcacc cacgcttgct
     2941 gccggagcgc cagagattac ggcgcggcag ttcagttttc ttatccgtcc tcatctgcgt
     3001 taatctgtgg cgctatgaaa aataccatca gcctcctgct cttactagcc aacctgcttt
     3061 ccttcaccgc gtttggccag accagcgtcg agacccaaat ccggcgcgtc gagaacggcc
     3121 ttttgcctgc cgtactgatc aaaggcgacc agccgtggtc tctcgaagag cgcatgaagc
     3181 actggaaagt tccgggcctc agtatcgccg tcgtgaaaga cttcaaagtc gaatgggccc
     3241 gcagttatgg cattaaagat atagacacga aagaacccgt aaccacggaa accctcttcc
     3301 aggccggttc gatcagtaag ccggtggccg cgatggtagc gctgaaacga gtgcagcaag
     3361 ggaagatctc actcgacgaa aacatcaaca acaagctcgt cacgtggaaa ctgcccgaca
     3421 acgaattcac cgcgaagaag aaagtcacgc tcgcgaattt gttgagtcac accggtggtc
     3481 tcacggtgca cggttttccc ggttacgcat caggcgaaaa gattccgacg ctgcctcagg
     3541 tgctcgatgg cactgaacca gcgaacaccg cggccgtgcg cgtcgatatg gagcccggca
     3601 cgaagtttcg ctattcaggc ggcggctcga ccatcgcgca actcgcgatc atggacattg
     3661 agaagaaacc ctatcccgag atcgcgaaag aaacagtgct tgggccactc aacatgacca
     3721 acagcactta cagccagccg ctcccggatg actggcgcaa gaaagccgca tcgggacatc
     3781 gcggtgacgg cgcgctcgtc gccggaaaga ttcacgtcta cccggaaatg gcagccgcgg
     3841 gattatggac cacgcccacg gacctcgcca agtttggcat cgaagttcaa ctttcttacg
     3901 ccgggaagtc aaacaaggtc ctgccgaagg agctgatcga caagatggtc acgcctttca
     3961 tggagaacgt cggtctcggg ttctttatcg acaagcgtgg caactctgtt tacttcggac
     4021 acgacggcgc cgatgaaggc ttccgcgcgt cgatgctgat gcatcgcgac aagggttacg
     4081 gcgttgtggt catggtcaat tccgacaacg gccagatcat gggcgaagtg ctccgcggtg
     4141 tcgcgtacgc gtatcagtgg gatgagtttc tgccggccgt taacgaaatc atctcgctcg
     4201 atgctacgaa gctcgacgag tacaccgggc gttttcagat taatccggat cgcattctca
     4261 ccgtcgcgcg cgaagaagga aagctggtcg ttagtccgac ggcggacgtg aagtttgaac
     4321 tgctgccggt ctcggaaaac actttcatcc gccgcgagca gaacctgaag tacacgtttg
     4381 tgaagagcgc cggcggcgtg aacgaaatga aagtcacctt ccccgcc
//
LOCUS       DASWTX010001046         1719 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_142942, whole genome shotgun sequence.
ACCESSION   DASWTX010001046 DASWTX010000000
VERSION     DASWTX010001046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1719
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142942"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..799
                     /locus_tag="VGD38_15980"
     CDS             <1..799
                     /locus_tag="VGD38_15980"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEY0729580.1"
                     /translation="RVLLLSVEKIELDGQVCLLHAANDVTQRNRAEDALRALSARLRS
                     AREEEGTRIAREIHDELGGALTGLKWDLERIDALLTASANDSLIPNVHERITSMTTII
                     ETTISAVRRIASELRPGMLDDLGLVAAIEWQVEQFQSRTGITCHWTNTANEVELDREK
                     ATTVFRILQEILTNVLRHAQATNLHVKLSRTKQHLELEVKDDGRGITKSQRTNPRSLG
                     LLGMKERALLVGGDVHVTGKEDHGTTVVVRVPLHTQDYVENPYNRRS"
     gene            768..1391
                     /locus_tag="VGD38_15985"
     CDS             768..1391
                     /locus_tag="VGD38_15985"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0729581.1"
                     /translation="MLRILTIDDHEVVRRGVKEMFTDASATVGEARSGAEALNMVREQ
                     HWDIAVLDISLGGRNGLEVLADLKQLRPKMPVLILSMHAEEQYAVRAFKAGASGYLNK
                     ATSAEELRRAILKIIKDGQYVSPSLAEKIVLQVGRSDKMPHETLSDRELQVLCSIASG
                     KTVGEIASQLSLSDKTISTYRRRILDKMEMKTNAELTYYAIRNGLVE"
BASE COUNT          415 a          488 c          475 g          341 t
ORIGIN      
        1 gcgagtgttg ttgctttcgg tggagaaaat agaactcgat ggtcaggtct gtctactgca
       61 tgcagccaac gacgtcacgc agcgcaaccg cgccgaagat gcactgcgcg cgctttcggc
      121 cagactgcgt tcggctcgcg aagaagaagg gacgcgcatc gctcgcgaga tacacgacga
      181 gctcggcggc gcgttgaccg gtctgaagtg ggacctcgaa cgcatcgacg cactcctgac
      241 cgcatccgca aacgattcgc tcatccccaa cgttcacgag cgaatcacct cgatgacgac
      301 catcatcgaa acaaccattt ccgccgttcg tcgaatcgct tctgaactgc gtccgggaat
      361 gctggacgat ctcgggctcg tggccgcgat cgaatggcaa gtggaacagt ttcagtcgcg
      421 cacgggaatc acgtgtcact ggaccaacac cgcaaacgaa gtcgaattgg atcgcgaaaa
      481 agcgacgacg gtctttcgta tccttcagga gattctgacc aacgtgttgc gccacgcgca
      541 ggccactaat ctccacgtga agttgtctcg aacgaaacag catttggagt tggaagttaa
      601 ggacgacggc cgcggtataa ccaagagtca aagaaccaat cctcgctcgc tcggcctgtt
      661 gggaatgaaa gaacgagcgc tgctggtcgg cggtgatgtt catgtcaccg gaaaagaaga
      721 tcacggcacg accgtggtcg tgcgagtgcc gctacacact caagactatg ttgagaatcc
      781 ttacaatcga cgatcatgaa gtcgtccggc gcggtgtgaa agaaatgttc accgacgcga
      841 gtgcgacagt cggcgaggct cgttccggcg ccgaagcgct gaacatggtt cgcgaacagc
      901 attgggacat cgccgtgctc gacatctctc tcggcggccg caacggcctc gaagtgctcg
      961 ccgatctcaa acagcttcgt cccaaaatgc cggtgctgat cctcagcatg cacgcggaag
     1021 aacaatacgc ggtgcgggct ttcaaagcgg gcgcgtcggg ctatcttaac aaggcaacgt
     1081 cagcagaaga gttgcgccgc gcgatcctca agataatcaa agacggccag tacgtcagtc
     1141 cctcactcgc cgaaaagatc gtgcttcagg ttggacgatc ggacaagatg cctcatgaga
     1201 ctctttcaga tcgcgagctg caagtgttgt gttcgatcgc gtccggcaaa actgttggcg
     1261 agatcgcctc gcagttgtca ctcagcgaca aaaccatcag cacctaccgc cgccgcatcc
     1321 tcgacaaaat ggaaatgaag accaacgccg aattgactta ctacgctatc cgcaacggat
     1381 tagtggagta agcttccgcc ttgtagggca aacactgaca agcctcctaa tcaaacctac
     1441 aaatcaatca gagttcggct gatatttttc ctgaatccct tcaagctata ttgactgatt
     1501 ctgatcgtcg atcggcgcgg caagcgtgtg gggaccgatc gacgaggcgc accgtgggag
     1561 gcaggcccgg agagggggct gcgtgcgttg gggcgcgggg ttcatttgac aacgatgaac
     1621 ttcgcgcctc tttcaaactt aatcctattc agaacctaac cttcgcggta cgatattcca
     1681 gcctttaacc tcgactgggc tcgcacgtcc gcacaatcg
//
LOCUS       DASWTX010001047         1831 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_345443, whole genome shotgun sequence.
ACCESSION   DASWTX010001047 DASWTX010000000
VERSION     DASWTX010001047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1831)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1831)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1831
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345443"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..769)
                     /locus_tag="VGD38_15990"
     CDS             complement(<1..769)
                     /locus_tag="VGD38_15990"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0729582.1"
                     /translation="MSVILPTFNRWPMVGEAVRSVLQQTFGLFELIVVDDGSTDQTVD
                     KLALSDRRLTLISTDRKGVSAARNTGVLRSTGQFIAFLDSDDLWLPDKLSCQTAYMMG
                     HPDTEICQTEEIWVRNGVRVNPKKLHKKPSGDVFLRSLDLCLVSPSAVMMTRSLFDSI
                     GGFDESLPVCEDYDLWLRIAMNRQITLISRPLVVKRGGHADQLSRSLWGMDRYRVQAL
                     QKLLRNGLEGSRRAAVLLVLRRKTGILAAGARKRGKSV"
     gene            complement(828..1259)
                     /locus_tag="VGD38_15995"
     CDS             complement(828..1259)
                     /locus_tag="VGD38_15995"
                     /inference="COORDINATES: protein motif:HMM:NF017999.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon monoxide dehydrogenase subunit G"
                     /protein_id="HEY0729583.1"
                     /translation="MKIEGSYTFNAPRERVWQVLQDPKIMAQCMPGCESMNQIGPDQY
                     EAVMKVGVASVKGTYKGKVTIKDKQPPSHYVLSGEGSGGPGFMQGDVSIDLEEQNNQT
                     LLKYSTDAKVGGLIASIGQRMMNGVAKMMVDQFFKKIETFI"
     gene            complement(1256..>1831)
                     /locus_tag="VGD38_16000"
     CDS             complement(1256..>1831)
                     /locus_tag="VGD38_16000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729584.1"
                     /translation="GYFSLHYLFGAKLSQDVVGANIVFLSERCFRFEQSRGLDPDTLR
                     EAQSQVAHPLARFFPIVFSERDECEIVKTVIRKGEIVRKRSLKEVLGFHRPCRNVVSI
                     AAGERFPRVFDLDLAEGGCRQHSQHGEKNQDNRHHVKNLSEALALIQIENRFARARVR
                     EALVVFLVSERYVLRVAGPSGRIPRKQRNAF"
BASE COUNT          422 a          545 c          477 g          387 t
ORIGIN      
        1 cgacggattt accacgtttc cgcgcacccg ccgccagaat gccggtcttt cgccgtaaca
       61 caagcaggac cgcagcgcgc cgagagcctt caagcccgtt gcgcaaaagt ttctgcagtg
      121 cttgcacgcg ataacggtcc attccccaca acgagcgcga caactgatcg gcatgtcctc
      181 cgcgcttcac caccaaaggt cgggatatca gcgtaatttg ccgattcatc gcgatccgga
      241 gccaaagatc atagtcttcg cataccggca agctctcatc gaagcctccg atagaatcga
      301 agagactacg ggtcatcatc accgcagagg gactcactag acagagatcg agactgcgca
      361 agaaaacatc gcccgaaggc tttttgtgga gcttcttcgg attgacccga acgccattgc
      421 gaacccaaat ctcttcggtc tggcagattt cggtatcggg atggcccatc atataagcgg
      481 tctggcaaga caacttgtca ggcagccaca ggtcgtccga gtcgaggaac gctatgaact
      541 gccccgtcga gcgcagcaca ccggtattgc gggccgccga gacgccttta cggtccgtag
      601 agatcagggt caagcgccga tccgacaggg caagcttatc gacggtctgg tccgtcgaac
      661 cgtcatcgac gacgatcagc tcgaagagcc caaacgtttg ctgcaaaacc gatctgacgg
      721 cttcgccgac cataggccag cgattgaagg tgggaaggat gacgctcaca agcggaagca
      781 cgttagacac cggggcagca cggcgccaca actgccaagc aaggggacta aataaatgtt
      841 tcgatcttct tgaaaaactg atcaaccatc atctttgcca cgccgttcat catgcgctgc
      901 ccaatgctgg cgatcagtcc gcccaccttg gcgtcggtgc tgtatttcag aagtgtttga
      961 ttgttctgct cttccaggtc gatggaaacg tccccttgca tgaagcccgg cccaccggag
     1021 ccctcaccgc tgagcacgta atgcgacggc ggttgcttgt ccttaattgt caccttgcct
     1081 ttgtaagttc ctttcacaga ggcgacgccg accttcatga cggcctcgta ctgatcgggt
     1141 cctatctggt tcatgctttc acaacccggc atgcactgcg ccatgatttt cgggtcctgg
     1201 agcacctgcc aaactcgttc gcgaggcgcg ttgaacgtgt aacttccctc gatcttcaaa
     1261 aagcgttcct ctgctttctc ggaatccggc cagaaggacc ggcaacccgc aaaacataac
     1321 gttccgagac caaaaagaca accagcgctt cgcgcacgcg cgctcgcgca aaacggtttt
     1381 caatttgaat caatgcaagg gcttcgctaa gatttttaac atgatggcga ttgtcttggt
     1441 tcttctcgcc gtgttgggaa tgctgccggc agccgccctc ggccaagtcc aggtcaaaga
     1501 cgcgcgggaa gcgttcgccc gcggctatgc tcaccacatt gcggcacggt ctgtggaagc
     1561 caaggacttc tttcaagctg cgcttccgga cgatttcgcc cttgcggatt acagtcttta
     1621 ctatctcgca ctcatcgcgt tcggagaaaa caattgggaa gaaacgcgcc aacgggtgag
     1681 cgacttgcga ctgcgcttcc cgcagagtat ctgggtccaa cccgcggctt tgctcgaagc
     1741 gaaagcagcg ttcgctgaga aaaactatgt tcgcgccaac gacatcttga ctcaacttcg
     1801 ctccgaaaag gtagtgaagc gagaagtatc c
//
LOCUS       DASWTX010001048         1509 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_36898, whole genome shotgun sequence.
ACCESSION   DASWTX010001048 DASWTX010000000
VERSION     DASWTX010001048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36898"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..734
                     /locus_tag="VGD38_16005"
     CDS             <1..734
                     /locus_tag="VGD38_16005"
                     /inference="COORDINATES: protein motif:HMM:NF015140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007154 - cell communication [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Calx-beta domain-containing protein"
                     /protein_id="HEY0729585.1"
                     /translation="DNDPPPSASIADVSTTEGTSTVANKMVSFTVTLSAASGQTVTVA
                     YATAPNTASNTDFVPVTGTLTFAPGETTSNLVVQYVGDRLAEDDETFFINLSSPNNVT
                     IADAQAVATIVDDDSPILQTASGRATALDAVIFVREPFAVTNPLYVGTDKRGRVMVFS
                     LNLILTPGLVVTAQGIDDQQVTHELPVEFVGNVPSFIPVIPTEPALTQIVLRLPEGIT
                     TPGDLRVRIIARGRSSNQVLIAVKP"
     gene            complement(760..>1509)
                     /locus_tag="VGD38_16010"
     CDS             complement(760..>1509)
                     /locus_tag="VGD38_16010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0729586.1"
                     /translation="RYYQVPDVELVFGRLGSRSLRAERATNVSGGVEALVGERVRVSF
                     EVFDREDANIFFSLSEPRLEGGQVTFAEFPFRNALDGHARGFELTLQRRSANKLAGWL
                     SYSFLRTRLTDSQTGLSFVADNEQRHLFNAYASYRFTDTWNLSSVFRYGSGPPIPGFF
                     RQAGDDFFLSDQRNQIRVPDYARLDVRVSKAFLFKRWKLTATGEVLNLLNRNNLRYAG
                     FDGFDTNTGRVFGQLDRVLPILPSAGVVIEF"
BASE COUNT          359 a          436 c          404 g          310 t
ORIGIN      
        1 tggataacga tcctccacca tccgcgtcaa tcgcggatgt gagcactacc gagggcacat
       61 ccaccgttgc caacaagatg gtgtcgttta cggtaacgct gtcggctgcg agcggacaga
      121 ctgtaaccgt agcctacgca actgctccca atacagcctc gaataccgat ttcgttcctg
      181 ttaccggaac actcaccttc gcaccgggtg aaacaacaag caacctggtg gtccagtatg
      241 tgggcgaccg gctcgccgag gacgacgaga cctttttcat caatttgagt agtcctaaca
      301 acgtcactat cgccgacgct caagcggtag caacaatagt cgatgacgac tctccgattc
      361 ttcaaacagc ttcggggcgt gcaaccgcgc tcgacgccgt tatttttgtt cgcgagcctt
      421 tcgccgttac caacccgctt tacgttggaa ccgacaagcg ggggcgcgtg atggtgtttt
      481 cgctaaatct tattctgact ccgggcctgg tagttacggc tcaaggcatt gacgatcaac
      541 aggtgaccca tgagctgccc gttgagttcg ttggaaacgt gccgagcttc attccagtaa
      601 ttcccacaga gcctgctctg acgcagatag ttctgaggct gccggaagga attacaaccc
      661 ccggtgattt gcgggtgaga ataatcgcgc gcggtagatc aagcaaccag gttctaattg
      721 ctgtgaagcc gtaataacac tcttcaatgc tctagcaaat tagaactcga tcaccacacc
      781 agcagacggc aggatcggta gaacacgatc gagctggccg aagacgcggc cggtgtttgt
      841 atcgaatccg tcaaagcccg cgtagcgcag gttgttccga ttcagcaggt tcaacacttc
      901 gcctgtggct gtcagtttcc agcgcttgaa gagaaacgct ttactgacgc gaacgtcgag
      961 gcgcgcgtag tcgggaacgc gaatctggtt gcgctgatcg gacaagaaaa agtcgtcgcc
     1021 ggcttgcctg aagaaaccgg gaattggcgg cccactgccg tagcgaaaga cactgctcag
     1081 gttccaggtg tcagtgaagc gatagctggc atacgcatta aacaggtgcc gctgctcgtt
     1141 atcggcaacg aacgacaagc cggtttgcga gtcagtgagt ctggttcgca agaacgaata
     1201 cgagagccaa cccgcaagct tgtttgcact gcgtcgttgc aacgtcagct caaacccacg
     1261 cgcatgaccg tctaacgcat tgcggaaagg gaactcagca aacgtaacct gaccgccttc
     1321 gagccgcggt tcggagaggc tgaagaagat gttcgcgtcc tcgcgatcga atacctcaaa
     1381 actcacgcgc acgcgctcgc caaccaacgc ctcgacaccg ccactgacat tcgtcgcccg
     1441 ctcagcgcgc agacttctcg acccgagccg gccgaatacc agttccacat cggggacctg
     1501 gtaatagcg
//
LOCUS       DASWTX010001049         1959 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_185976, whole genome shotgun sequence.
ACCESSION   DASWTX010001049 DASWTX010000000
VERSION     DASWTX010001049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1959
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185976"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1002
                     /locus_tag="VGD38_16015"
     CDS             <1..1002
                     /locus_tag="VGD38_16015"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY0729587.1"
                     /translation="VNQYAITWGSKDFRNAIARKTRSYLGLDIDPETEITVTCGSTEG
                     MIAAMMATVDPGDEVIVFEPFYENYAPDAILSDAKPRHVPLRAPDWSFDRDELRSAFN
                     EKTKAIIVCNPNNPTGKVFTQDEMEFIAGLCQEFDTLCFTDEIYEHILYPREGADIRH
                     ISMAQLDGMRDRTVVVTSMSKTYSVTGWRVGYCIAPPAITSAIRKVHDFLTVGAAAPL
                     QAAGAYALSLPQEYYDKLQIEYRERRDLLLPVLEKAGFKTYVPDGAYYIMTDISGFGF
                     QDDVEFTKHLIREVGVACVPGSSFYSQPSLGQQQVRFCFCKKDETLYAAADRLTKLK"
     gene            1062..1919
                     /locus_tag="VGD38_16020"
     CDS             1062..1919
                     /locus_tag="VGD38_16020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4350 domain-containing protein"
                     /protein_id="HEY0729588.1"
                     /translation="MAQQLPDPEFDTAVENPAYKKDGPRVMFDEAHHNFHTTEGRYKP
                     FVDLLMNDGYRVIRNRQPFTKSTLSSFKVLVIANALGAEEMDDNGADGSAFTEEETQA
                     VHDWVKSGGALLLIADHAPFGGAAAALGNRFGVDMSKGFTYDPANSATNSPSLLIFSR
                     ENKLLATHPITEGRDQNERLNIVQSFTGQSLKGPEDSFAILKLADTAKDTPNREADSS
                     VSAAGRAQAIALKFGKGRVVVQGEAAMLSAQISGQNKQKMGMNVPGNDNRQYALNLMH
                     WLSGLLKEK"
BASE COUNT          467 a          623 c          505 g          364 t
ORIGIN      
        1 gtcaaccagt acgccatcac gtggggctca aaagattttc gcaacgccat cgcccggaaa
       61 acacgctcgt acctcggact cgatatcgat ccggaaaccg aaatcacagt aacctgcggc
      121 tccaccgaag gcatgattgc cgccatgatg gcgaccgtcg atcccggcga cgaagtgatc
      181 gttttcgaac cgttctacga aaactacgcg cccgacgcga tcctctccga cgcaaaacca
      241 cgccacgtgc cgctgcgcgc gcccgattgg agcttcgatc gcgacgaact gcgcagcgcg
      301 ttcaacgaaa agaccaaggc catcatcgtc tgcaacccaa acaacccgac cggcaaagtc
      361 ttcacgcaag acgagatgga attcatcgcc ggtctgtgcc aggaattcga cacgctctgc
      421 ttcaccgacg agatttacga acacatcctg tacccgcgcg aaggcgccga catccgccac
      481 atctcgatgg cccaactcga cggcatgcgc gatcgcacgg ttgtcgtgac ctcgatgtcg
      541 aagacttatt ccgtaaccgg ctggcgcgtg ggctactgca tcgcaccgcc cgcaatcacg
      601 agcgccattc gcaaggttca cgactttctg accgtcggcg cggcggcgcc gttgcaggcg
      661 gccggcgctt acgcgttgtc gttgccgcag gagtattacg acaagttgca gatcgagtat
      721 cgcgagcgcc gcgatctatt gttgccggtg ttggaaaaag caggtttcaa aacctacgtg
      781 cctgacggcg cttactacat catgaccgac atctccggct tcggctttca ggacgatgtc
      841 gaatttacaa aacacctgat ccgcgaggtc ggcgtcgcct gcgtgcccgg ttcgagcttt
      901 tacagccaac cgtcgctggg ccaacagcag gttcggttct gtttctgcaa aaaagacgaa
      961 actctttacg cggctgctga ccggctcaca aagcttaaat gaaacgcgcc gctcttattt
     1021 gcctgctgct gtccgttttt tctgtgtcat ccgtggccgt tttggcccag caactccctg
     1081 atccggaatt tgataccgcc gtcgaaaacc cggcttacaa aaaagacggc ccgcgcgtca
     1141 tgttcgacga ggcgcatcac aacttccaca cgaccgaagg ccgttacaaa ccattcgtcg
     1201 atctcctgat gaacgacggc taccgcgtca ttcgcaatcg ccaaccattc accaaaagca
     1261 ccttgagcag tttcaaagtg ctcgtgatcg caaacgccct cggcgcggaa gagatggacg
     1321 acaacggcgc cgatggatcc gcattcaccg aagaagaaac tcaggccgtg cacgactggg
     1381 taaaatccgg cggcgctctg ttgctgatcg cagatcacgc gccgttcggc ggcgctgccg
     1441 cggcactcgg caatcgcttt ggcgtcgaca tgagcaaagg cttcacttac gacccggcaa
     1501 actcggccac aaacagcccc tcactcctga tcttttcacg cgaaaacaaa ctgctcgcaa
     1561 cgcaccccat caccgaagga cgcgatcaaa acgaacgcct caacatcgtg cagagcttca
     1621 cgggccaatc attaaaagga cccgaagaca gcttcgccat tctcaaactc gccgacaccg
     1681 cgaaagacac gccgaaccgc gaggccgact catccgtctc ggcagccgga cgcgctcaag
     1741 ccatcgcgct taagttcggc aaaggacgcg tggtggtcca gggcgaagcc gcaatgcttt
     1801 ccgcccaaat ctccggacaa aacaaacaga agatgggcat gaacgttccc ggcaacgaca
     1861 accggcaata cgcgctgaat ctcatgcact ggctgtcggg cttgttgaaa gagaagtaag
     1921 ccggtgtggg atcgcaaacg gcagatcatc tggattgtc
//
LOCUS       DASWTX010001050         2180 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_79759, whole genome shotgun sequence.
ACCESSION   DASWTX010001050 DASWTX010000000
VERSION     DASWTX010001050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2180
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79759"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..843)
                     /locus_tag="VGD38_16025"
     CDS             complement(<1..843)
                     /locus_tag="VGD38_16025"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0729589.1"
                     /translation="MLKDIRYGLRSLIKHPTFTVVSIVTLALGIGANTAIFTVVNAVV
                     LRPLPFQDGDRLAMVWTTRDANQEQPLSFADYNDLKNQTKTFSAVGAASPLWNFTLTG
                     GGEPEPLQGMYVSANLFELLRVVPERGRNFTSDEDRVGGTPVAIISRSLWERRFGGDQ
                     DIIGKPIIISGTSATVVGVMPAGFRLLDPAAELWVPLQQNQFASSGRQVRLLSVVGRL
                     SDELAPAAAGSELSTIANQWAGQYPDTNKGVGMRVVPLHDQVTGKVRPALLLLLGAVG
                     LVLLI"
     gene            complement(861..>2180)
                     /locus_tag="VGD38_16030"
     CDS             complement(861..>2180)
                     /locus_tag="VGD38_16030"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY0729590.1"
                     /translation="FGLIPAIQAGEVDVHETLKETGRGVSGRQWLRSSLVVVEVATTL
                     VLLIGAGLMIRSFYLLQKVNPGFSYEHLTSFSVSLPQRKYATDETQASFYNRLLENIR
                     ALPGVEATAAASGLPLGNNGWQTSFLVDGQPRPPRDQTPLMEACLVTPDYFRAMNIPL
                     LRGRVFNDRDDKSHMAGRDLSKLNENEREIAALNTVVIDEEFARRHWPNEDAVGKRIR
                     LGGDDDGQLLEVIGVVGRVKMESLNQNSDRVQGYFPYAQLPGGGMTVIVKGSSDPNQL
                     VSSIRGAVKEIDPDQPIYNPRTMHEIRAESVAGERLNLTLLSLFAGIALVLAIVGIYG
                     VMSYSVTQRTHEIGIRMAIGARPRDVFTMILGQGMKLALIGVAIGLLLAFALTRLMAT
                     MLFGVEPTDVPTFAGISILLISVAVLACYLPGRRATKVEPTVSLRYE"
BASE COUNT          501 a          741 c          513 g          425 t
ORIGIN      
        1 aatcaacaac acgaggccga ccgcgccgag caatagcaac aaagccggac ggacttttcc
       61 ggtgacctga tcatgcaacg gcacgacacg cataccgacg cctttgtttg tgtcgggata
      121 ttggccggcc cactgattcg cgatcgtgct tagttcactg ccggccgcag caggagctaa
      181 ctcatccgac aacctgccca ccaccgacag caatctcacc tgacgcccac tcgacgcaaa
      241 ctgattctgc tgcagcggta cccacaactc cgccgccgga tcgagcaacc gaaaacccgc
      301 cggcatcacg ccaacaactg tcgcgctcgt cccgcttatt attatcggct ttccaattat
      361 gtcttgatcc cctccaaacc gacgttccca caacgaacga ctaataatcg cgaccggcgt
      421 cccacccacg cgatcttcat cactcgtaaa attgcgtcca cgctccggca caactcttaa
      481 caactcaaac aaattcgcgg acacatacat gccctgcaac ggctccggtt cgccaccgcc
      541 ggtcaacgta aaattccaca gcggtgacgc cgcgccaaca gcactaaacg tcttcgtctg
      601 attctttaga tcgttgtagt cggcaaacga aagcggctgc tcctgatttg catccctcgt
      661 ggtccacacc attgcgagac gatccccatc ctgaaaaggc aacggccgca aaacgaccgc
      721 attcactacc gtaaagatcg ccgtgttcgc gccaatcccc agcgccagcg tcacgatact
      781 cactaccgta aatgtcgggt gcttgatcag acttcgcagt ccgtaacgga tgtcctttag
      841 catttatgta atccgtgatc ctactcgtaa cgaagcgaaa cggtcggctc gactttcgtc
      901 gctctgcgtc ccggcagata acatgccagc accgccaccg agatcagcag aatcgaaatc
      961 cccgcaaacg tcggcacgtc agtcggctcg actccgaaga gcatcgtggc catcagccgc
     1021 gtcaacgcaa acgccagcaa caacccgatt gccacgccga tcagcgcgag cttcatgccc
     1081 tggcccagga tcatcgtaaa cacgtcgcgc ggccgcgcgc cgatcgccat gcgaatgccg
     1141 atctcgtgcg tgcgctgcgt gaccgagtaa gacatcacgc cgtaaatgcc gacaatcgcc
     1201 agcactagcg cgataccggc aaacagactc aacagcgtca ggttcaaacg ctcacccgcc
     1261 accgactccg cgcggatctc atgcatcgtg cgcgggttgt agatcggctg atccggatcg
     1321 atctctttca ccgccccacg tatcgacgac actaactggt tcggatcgga gctgcctttg
     1381 acgatcaccg tcatcccgcc gcccggcaac tgcgcatacg ggaaatatcc ctgcacgcga
     1441 tcgctgttct gattcagact ctccatcttc acacggccca cgacgccgat gacctcgagt
     1501 aactgtccgt cgtcatcacc gccgagtctt attcgtttcc cgactgcgtc ttcgttgggc
     1561 cagtgccgac gcgcaaactc ctcgtcgata acgaccgtgt tcagcgccgc aatctcgcgt
     1621 tcgttctcat ttaatttgct caggtcacga ccggccatgt gcgacttatc gtcgcgatcg
     1681 ttgaagacgc gtccacgcaa caatggaatg ttcatcgcgc ggaagtaatc aggcgtgacc
     1741 aaacacgctt ccatcaacgg cgtctgatcg cgcggcggac gcggttgccc gtcgacgaga
     1801 aacgacgtct gccaaccgtt gttgccgagc ggtaatccgg acgccgccgc agtcgcttcg
     1861 actcccggca acgcgcgaat gttctccagc aaacgattgt agaaagacgc ttgcgtctcg
     1921 tcggtggcat atttcctttg cggcagtgag acgctgaaac tcgtcaaatg ctcgtacgag
     1981 aaacccgggt tcactttctg caacaggtaa aaactgcgaa tcatcaaacc cgcgccaatc
     2041 aacagcacga gcgtcgtcgc gacttccacc accacgagcg aactgcgcaa ccattgccgc
     2101 ccactcacac cgcggcccgt ttctttcaac gtctcatgca cgtcgacttc acccgcctga
     2161 atcgcgggaa tgagtccaaa
//
LOCUS       DASWTX010001051         2130 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_368177, whole genome shotgun sequence.
ACCESSION   DASWTX010001051 DASWTX010000000
VERSION     DASWTX010001051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2130
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368177"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..682)
                     /locus_tag="VGD38_16035"
     CDS             complement(<1..682)
                     /locus_tag="VGD38_16035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729591.1"
                     /translation="MVKKTALLLAAVGLLAVAIVGVRSVLKPEVNELSIEQPTKTDQR
                     IVRAQQLIERTPGQAGGYNQLAAAYMQKARETSDFSFNAHASKAIDQSLTIENDNYDA
                     LKLRAKLELTYHRFAEALETTRRAQTFRNDDHDVWGQITDALVELGDYKGAVQAAQRM
                     VDLRPDSSAYARVSYLRSLHGDTDGAIDAMSAAIKSANPNDPEAVAWCHVQLGNELLN
                     AGKLEAAER"
     gene            complement(716..>2130)
                     /locus_tag="VGD38_16040"
     CDS             complement(716..>2130)
                     /locus_tag="VGD38_16040"
                     /inference="COORDINATES: protein motif:HMM:NF025585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4331 domain-containing protein"
                     /protein_id="HEY0729592.1"
                     /translation="APLIVADPLADNTDTYAFRSTEPGRNGFVTLIANWIPFQEPSGG
                     PHFYKFDDTVLYEIYVDNTGDGVEDVTYQFRFDTQFKNPDSVLGMAAPNQAVAGTGGV
                     EPLITSLNDPDYNEPQTYSVRRIDRYTGKRGVVLASGLITPPNNIGERTTPNYEAALG
                     QPAVYPLPNGGRVFAGQRDEGFYIDVGGIFDTLKLKSIGATDGVDSTAGFNVSTIAIE
                     VPIQELTRSGAVPAGPTAPDAVIGVWATSSRQKISVLRSFDKDEEPLTVGPYQQVSRL
                     GSPLVNEVIIPLKLKDAFNRSTPAGDSQFAQFVTNPQLAQLLSAVFGITVPAAPRNDL
                     VAIFATGIPVNPVTGPNFTTFLSDGRPHEMLRLNVAIAPSANPSRLGLLGGDVAGFPN
                     GRRVFDDVVDIALRAVAGGTPFTPATNIPPNNTLGDGVANNDVPFLTRFPYLGTPQSG
                     NSTLGAPHEHHTINALPALP"
BASE COUNT          384 a          591 c          670 g          485 t
ORIGIN      
        1 gacgttcggc ggcttcgagc tttccggcgt tgagtagttc gtttccgagt tggacgtgac
       61 accacgcgac ggcttcggga tcgttcgggt tggcggactt gatggccgcg ctcatcgcgt
      121 cgatcgcccc gtcggtatcg ccgtgtaacg aacgcaggta tgaaactcgc gcgtaagccg
      181 aactgtcagg tctgagatcg accatccttt gcgccgcttg caccgcgcct ttgtaatcgc
      241 cgagctccac gagcgcgtcc gtgatctgtc cccaaacgtc gtgatcgtcg ttgcgaaatg
      301 tttgtgcgcg acgcgtagtt tccaacgctt cggcgaaacg gtgataagtc agttccagtt
      361 tcgcgcgcag cttgagcgcg tcgtagttgt cgttttcgat tgtgagcgat tgatcgattg
      421 ccttactcgc gtgcgcgttg aaagagaagt cggatgtctc tcgggccttt tgcatgtaag
      481 cggccgcgag ctggttgtag ccgccggctt gaccgggtgt tcgttcgatc aactgttgcg
      541 cacgaacaat ccgctggtct gttttggtgg gctgttcaat cgaaagctca ttcacttccg
      601 gtttgagaac cgatcgaaca ccaacgatcg cgaccgccag caagccaacc gcagcgagta
      661 acaaagctgt cttcttaacc atgtttcgtt tacctctcgt gcgttgttgc ggcgctcatg
      721 ggagcgccgg caacgcgttg atcgtgtggt gctcgtgcgg cgcaccgagc gtgctgtttc
      781 cggattgtgg cgtgccgagg taagggaatc tcgtcaggaa cggcacgtcg ttgtttgcca
      841 caccgtcgcc caacgtattg ttcggcggga tgttcgtcgc gggcgtgaac ggtgttcctc
      901 cagcaactgc gcgcaacgca atgtcgacga cgtcgtcgaa gacgcggcgt ccgttcggaa
      961 aacccgcaac gtcaccgccg agcagaccga ggcggctcgg attcgcggat ggcgcaatcg
     1021 cgacgttgag acggagcatt tcgtgcgggc gcccgtcaga aagaaacgtc gtgaagtttg
     1081 ggccagtcac cgggttcacc ggaattccgg tcgcaaagat cgcgaccaga tcgtttcgcg
     1141 gcgccgccgg caccgtgatg ccaaagaccg cgctcagtaa ctgagcgagc tgcggattgg
     1201 tgacaaactg cgcgaactgc gaatcacccg cgggcgtcga gcgattgaat gcgtccttta
     1261 gtttgagtgg aatgatcact tcgtttacga gcggcgaacc cagtcgcgag acctgttgat
     1321 atggtccaac agtcaaaggc tcctcgtctt tgtcgaatga ccgcaagaca ctgattttct
     1381 gtctgcttga agtcgcccaa acaccgatga cggcatcggg cgcggttgga ccagcgggca
     1441 ccgcaccgct gcgtgtgagc tcttgaatcg ggacttcgat cgcgatcgtg ctgacgttga
     1501 agcccgctgt cgaatcaacg ccgtcggtcg cgccgatgga tttgagtttg agcgtgtcga
     1561 agatgccgcc cacgtcgatg tagaagccct cgtctctttg accggcgaac acgcggcctc
     1621 cgttcggcaa cggatagacg gccggttggc ctagagcggc ttcatagttt ggtgtggtgc
     1681 gttcgccgat gttgtttggc ggcgtgatca agccgctcgc gagcacgacg ccgcgtttgc
     1741 cggtgtagcg atcgatgcgc cgtacgctgt acgtttgcgg ttcgttgtaa tccggatcgt
     1801 ttagcgaagt gataagtggc tcgacgccgc cggttcccgc gactgcctga ttcggcgcgg
     1861 ccatgccgag cactgaatcc gggttcttga actgcgtgtc gaagcggaat tgatacgtga
     1921 cgtcttcgac gccgtcgccg gtgttgtcga catagatctc gtagaggacc gtgtcatcga
     1981 atttgtagaa gtgtggacca ccggacggct cctgaaacgg gatccagttg gcgatgagcg
     2041 tgacgaagcc attgcgcccg ggttccgtgc ttctgaacgc gtaggtgtcg gtgttatcgg
     2101 ccagcggatc ggccacaatc aacggcgcct
//
LOCUS       DASWTX010001052         2705 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_142991, whole genome shotgun sequence.
ACCESSION   DASWTX010001052 DASWTX010000000
VERSION     DASWTX010001052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2705
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142991"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2681)
                     /locus_tag="VGD38_16045"
     CDS             complement(<1..2681)
                     /locus_tag="VGD38_16045"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY0729593.1"
                     /translation="MDLDKISHYRILEKLGAGGMGEVYLAEDMKLGRKVAIKILSEEY
                     TTNKDRLQRFEQEASAASNLNHPNILTIHEVGTDNGRHYIATEYIDGLTLRRKFLASH
                     MEIPEILDIAVQVASALEEAHSAGIVHRDVKPDNIMVRRNGYVKVLDFGLAKLTETVD
                     RSSSDAEASTRVFVQTDAGVVMGTSHYMSPEQARGKPVDARSDIWSLGVVIYELVTGR
                     TPFEGETSTDVIVGITQKEPLPLARYAPNVPAELDWIVMKALRKDRDERYQTSKELLT
                     DLRRLKQRLEFESELERSSVPGVYNTLRSGDIVAPTTPERALPTKTVTHVSSAEYIAT
                     EIKRHKVAAAILAILLLAGTAAGFYFYYNRTKPLTDKDTVLLADFVNTTGEPVFDGTL
                     KQALAVHLGQTPFLNLFPEERVRETLRFMGRSPDERITRDVGREICERQGLRALLTGS
                     IASLGSHYNITLEAVNPRSGVAFASEQIEAESKEKVLSALSTAAWNLRKKLGESLASM
                     QKYDVGIEQATTPSLEALKAYAMANDERSQGKQRESLALYKRAVELDPNFAMAWARIG
                     VHYANQQQPEAAKEYVQKAYDLRDRVSERERLYITEKYYAYITGELDKTIETLQTWAR
                     LYPNDFIPHNNLSLNYKLIGRYEDAMKEGLEAVRLSPNNTSARDNLTASFVGLGRADE
                     AEQMAKESEKINPDTYAAHLPKYFFAFKRRDQAGMDRELEWAKGRPEEAEFTSVAAFT
                     AVYFGKWKQAEELQRRSVEMFKAQGRKENSAQGLLALAGNLVYLEKCSDAKDYAKEAL
                     SAFRGQQTMAGAAQVFAACGDEGQAQSLLDELLKLYPKNTVVTAIVAPMVRAELEMVR
                     GNYERALQLLESCRAYDFGQLTGVSNPYSRANLFLKLR"
BASE COUNT          495 a          801 c          782 g          627 t
ORIGIN      
        1 cgcagcttca aaaagagatt tgcgcggcta taaggatttg agaccccggt cagttggccg
       61 aaatcgtaag cacggcacga ttccaataat tgaagcgcgc gttcgtaatt accccggacc
      121 atttcgagct ccgcgcgcac catcggcgcc acgatcgccg tgacgaccgt gttcttcgga
      181 tagagcttca gcagttcgtc gagcaacgac tgcgcctggc cttcatcacc gcaggctgca
      241 aacacctgcg ccgcaccggc catagtttgt tggccgcgaa aagcggagag cgcctccttc
      301 gcgtagtctt tggcgtccga acacttctcg agatagacga ggtttccggc taaagccagc
      361 agtccctgcg ccgaattttc tttccgaccc tgcgccttga acatctccac tgaacgtctc
      421 tggagctctt cagcttgctt ccacttgccg aagtagactg cggtgaaagc agccacggaa
      481 gtgaactccg cttcttcagg ccggcccttg gcccattcaa gctcgcgatc cattccggct
      541 tgatcgcggc gcttgaaggc aaagaaatat ttgggcaaat gagccgcgta cgtgtcggga
      601 tttattttct ccgactcttt cgccatctgc tccgcttcgt ccgcgcggcc gagccctaca
      661 aaactggcgg tgagattatc tcgcgcactt gtgttgttgg gacttaacct gaccgcctcc
      721 aggccttcct tcatcgcgtc ttcgtagcgg ccgatcagct tgtagttaag cgagagattg
      781 ttgtgcggta tgaagtcgtt agggtagagc cgcgcccagg tttgcagcgt ctcgatcgtc
      841 ttgtcgagtt cgccggtgat gtaggcgtag tatttttcgg tgatgtagag ccgttcgcgt
      901 tcgctgacac ggtcgcgcag gtcgtacgcc ttttgcacgt actccttggc cgcttcgggc
      961 tgttgctggt tggcgtaatg aacgccgatg cgcgcccagg ccatcgcgaa gtttggatcg
     1021 agttcgacgg cacgtttata caaggccagc gactcgcgct gtttaccttg cgaccgctcg
     1081 tcgttggcca tcgcgtaagc cttcagcgct tcgagcgaag gagtcgtcgc ctgttcgatg
     1141 ccgacgtcgt acttctgcat cgaggcgagc gactcgccga gtttcttgcg caggttccac
     1201 gccgcggtgc tgagtgccga aagaactttc tctttactct cggcctcgat ctgttcgctc
     1261 gcaaacgcga cacccgaacg cgggttcacc gcttcaagcg tgatgttgta atgactgccg
     1321 agactcgcga tagatccggt cagcagcgcg cgtagtccct gtcgttcaca gatctcacgt
     1381 ccgacgtcgc gtgtgatgcg ttcgtcaggc gaacggccca tgaagcgcaa cgtttcgcgc
     1441 acgcgctctt cgggaaacag attcaagaac ggcgtctggc cgagatgaac cgcgagcgct
     1501 tgtttcagtg tgccgtcaaa aaccggttcg ccggtcgtgt tgacgaagtc ggcgagcagc
     1561 accgtgtctt tgtccgtgag cggcttggtg cgattgtagt agaaataaaa accggcggca
     1621 gttccggcca gcagcagaat cgcgaggatc gcggccgcga ctttgtgccg cttgatctcc
     1681 gtcgcgatgt actccgcgct cgaaacgtgc gtgacggtct tcgtaggcag cgcgcgctcg
     1741 ggtgttgtcg gcgcaacgat gtcgccgctt ctcaacgtgt tgtagacacc gggcactgac
     1801 gagcgttcga gttcagactc aaactccagc cgctgcttga gccggcgcaa atccgtcagc
     1861 agttccttgc tcgtctggta acgctcgtcg cgatctttgc gcaacgcctt catcacgatc
     1921 cagtcgagtt cggcgggaac gttcggcgcg taacgcgcca acggcagcgg ttctttctgc
     1981 gtgatgccga cgatcacgtc ggtcgacgtt tcgccttcga acggcgtgcg gccggtgacg
     2041 agctcgtaaa tcacaacgcc gaggctccag atgtcactgc gcgcatcgac cggtttgccg
     2101 cgcgcctgtt ccggcgacat gtagtgggac gttcccatca cgacacccgc gtccgtttga
     2161 acaaacacgc gggtcgaagc ttcggcgtca gacgaactgc gatcgacagt ctccgtcaac
     2221 ttcgcgagac cgaaatccag caccttcacg tagccgttgc ggcgcaccat gatgttgtcg
     2281 ggtttgacgt cgcgatgaac gatgccggcg gagtgtgctt cttcaagcgc gctcgcgacc
     2341 tgaacggcga tgtcgagtat ctcgggaatc tccatgtgcg acgcgagaaa tttgcggcgc
     2401 aacgttaagc cgtcgatgta ctcggtcgcg atatagtgac gcccgttgtc agttccgact
     2461 tcgtgaatcg tgaggatgtt cgggtgattc aggttcgaag ccgcagacgc ttcctgctcg
     2521 aagcgctgca ggcgatcttt gttggtcgtg tactcctcgc tgagaatctt gatcgcgacc
     2581 ttgcggccga gtttcatgtc ctccgccagg tagacttcac ccatcccgcc cgcgccgagt
     2641 ttttcgagaa tccggtaatg cgaaatctta tctaagtcca tgcgtcacga ttcagccgtg
     2701 cgact
//
LOCUS       DASWTX010001053         2113 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_425144, whole genome shotgun sequence.
ACCESSION   DASWTX010001053 DASWTX010000000
VERSION     DASWTX010001053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2113
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_425144"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1422
                     /locus_tag="VGD38_16050"
     CDS             <1..1422
                     /locus_tag="VGD38_16050"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY0729594.1"
                     /translation="RRQMSVQFSGGEPSISPHFIEAIKYSRKVGYNSVQAATNGIEFA
                     KSKEFCRQAAEAGLRYVYLQFDGIGNDANSHRQVGNLFDVKMRAINNLHEAGVEIVLV
                     TTLVNGINNDQVGSIIRFALDNPKKIAFLSFQPVSFTGRDEEITEQRRLQQRYTLSHL
                     AHDVKDQVGITEPTRDWFPLSLMGAFADFADLVHGPEAEWGQVSCGCHPNCGVGTAVM
                     IDKETKEMRPVPEFLNIPGLVKDMQKITDAARGKWMSNLMMGLTLLKHYNPYNSPTNF
                     TLYELFKKFDKSFGLTGKDYGKVSGDRTERDIQARRADRWNFLFIAGMWFQDLFNYDF
                     RRTEMCIIPYGTQEGEISFCAYNTGIGWRNIIENMHQNATVAKWYQEHGRHEIFAGGK
                     DVHLADKSHGLILNEVDLMRPNKPQMEGPKTAHEEAVMMRKLYQEMVLKKQSIAKEAD
                     KPVQIKGLGRKKEEPAEAEAVLV"
     gene            1572..1775
                     /gene="rpsU"
                     /locus_tag="VGD38_16055"
     CDS             1572..1775
                     /gene="rpsU"
                     /locus_tag="VGD38_16055"
                     /inference="COORDINATES: protein motif:HMM:TIGR00030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEY0729595.1"
                     /translation="MAIVTVNQGESIESALRRFKRKVMTEEIIKDAKKHAFFIPPGQK
                     AKLKSALARKRNKKKGRMRIPRD"
     gene            1911..>2113
                     /locus_tag="VGD38_16060"
     CDS             1911..>2113
                     /locus_tag="VGD38_16060"
                     /inference="COORDINATES: protein motif:HMM:NF014077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HEY0729596.1"
                     /translation="MTRILITNDDGIHSDGLIKLEEALKQVGDVYVVAPASEMSGASH
                     SLTLARPLRIRQLDERHWAIDGTP"
BASE COUNT          528 a          589 c          604 g          392 t
ORIGIN      
        1 cgccgccaga tgtcggtgca gttctcgggt ggtgagccgt ccatctcgcc gcacttcatc
       61 gaagcgatca agtactcgcg caaagtcggt tacaacagcg tgcaggcggc gaccaacggt
      121 atcgagttcg ccaagagcaa agaattctgc cggcaagccg ccgaagccgg actgcgttac
      181 gtctatctcc agtttgacgg tatcggcaac gacgcgaaca gccaccgcca ggtcggcaat
      241 ctgttcgacg tgaagatgag agcgatcaac aacctccacg aagcgggcgt cgagatcgtg
      301 ctcgtcacca cgctcgtcaa cggcatcaac aacgaccagg tcggatcgat cattcgcttc
      361 gcgctcgaca atccgaagaa gattgcgttc ctttcgttcc aaccggtttc gttcaccggc
      421 cgcgacgaag agatcaccga acagcgccgc ctgcaacaac gctacacgtt gtcgcacctg
      481 gcgcacgacg tgaaggatca ggttggtatc actgagccga cgcgcgattg gttcccgctg
      541 tcgttgatgg gcgccttcgc cgacttcgcc gatctcgttc acggaccgga agccgaatgg
      601 ggccaagtct cctgcggttg ccacccgaac tgcggcgtcg gcactgcggt gatgatcgac
      661 aaggaaacga aagagatgag accggtgccg gagttcctga acattccggg tctcgtcaag
      721 gacatgcaga agatcactga cgccgcgcgc ggcaagtgga tgtcgaacct gatgatgggt
      781 ctgacgctgc tgaagcacta caacccgtac aactcgccga caaacttcac gctttacgag
      841 ctcttcaaga agtttgacaa gtcgtttggc ttgaccggca aggactacgg caaggtgagc
      901 ggcgatcgca cggagcggga tattcaggcg cgccgtgcgg accgctggaa cttcctgttc
      961 atcgcgggaa tgtggttcca ggatctcttc aactacgact tccgccgcac ggaaatgtgc
     1021 atcattccgt acggcacgca ggaaggcgaa atctccttct gtgcttacaa cacgggtatc
     1081 ggctggagaa acatcatcga gaacatgcac cagaatgcga ccgtcgcgaa gtggtatcag
     1141 gagcatggcc ggcacgagat cttcgccggc ggcaaggacg tgcatctcgc cgacaagtca
     1201 catggtttga ttctgaatga agttgacttg atgcggccga acaagccgca aatggaggga
     1261 ccgaagacgg cccacgagga agccgtcatg atgcggaagc tttaccagga gatggtattg
     1321 aagaagcagt caattgcgaa agaggccgac aaaccggtgc agatcaaagg tctgggccgg
     1381 aagaaagagg aacccgcgga agcggaagca gtgttggttt aacggtttcc acctgagcgc
     1441 tcgagaaata taggtcctat atgtctatag gacctatact tttgcccctc aacccgactt
     1501 gaccgcgggc gcttccggcg tgttaaatag ctctcctgca aaggatcgag aaaggaaaag
     1561 cagagaatcg aatggcaata gttactgtta atcagggtga atcgattgaa agcgcattgc
     1621 ggcgcttcaa gcgcaaagtg atgaccgagg agatcatcaa ggacgccaaa aagcacgcct
     1681 tctttattcc gcccggtcaa aaggccaaat taaaatcagc cctggcccgc aagcgcaaca
     1741 agaaaaaagg ccgaatgcgc attccgcgcg attagcttct ccgctaacac acgccaagcg
     1801 gcccgtactc ttatctcacc agtcgtctta accaggaata aaaaccggag gctcctgagt
     1861 gaggagccag ccgaaactgg agtgtgcgac gagataaatg tgaatagagt atgacgcgga
     1921 ttttgatcac caacgacgac ggcatccact ccgacgggct catcaaactc gaagaagccc
     1981 tgaagcaggt gggcgacgtc tatgtcgtcg cgccggcttc ggagatgagc ggagcttcac
     2041 acagtctgac gctcgcgcgg ccgttgcgta tccgccaact cgacgagcgc cactgggcca
     2101 tcgacggcac tcc
//
LOCUS       DASWTX010001054         2614 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_345565, whole genome shotgun sequence.
ACCESSION   DASWTX010001054 DASWTX010000000
VERSION     DASWTX010001054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2614
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345565"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..858
                     /locus_tag="VGD38_16065"
     CDS             <1..858
                     /locus_tag="VGD38_16065"
                     /inference="COORDINATES: protein motif:HMM:NF014972.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729597.1"
                     /translation="EILFVADAMTGQDAVRSAEEFHRRVGITGVILTKMDGDARGGAA
                     LSIKQVTGQPVKFVGVGERYDALEPFYPDRVAQRILGMGDVLSLIEEVQSKVDQSEAE
                     AQLKKLQQNEFTLDDFRSQLRQVKKLGSFSKIMKLLPDQLLGGMGMPQLTDEQSKQME
                     QELKRTEAIIDSMTWEERNDHRILNANRRRRIARGSGTNVASVNQLIKQYVEMRQMMR
                     QLSGSGLFGGSGLKGKMMRKMTGMPDLSGFGGGDEGDMPPMPPMPSLPGAAGPSRKKL
                     KKKKKKRRR"
     gene            869..1132
                     /gene="rpsP"
                     /locus_tag="VGD38_16070"
     CDS             869..1132
                     /gene="rpsP"
                     /locus_tag="VGD38_16070"
                     /inference="COORDINATES: protein motif:HMM:TIGR00002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEY0729598.1"
                     /translation="MLAIKLMRTGAKKSPSYRVVVKEKQSKRDGAYLENLGTYNPTRN
                     PAEINLNLERVNYWIEKGAQPTDTVHRLIRASAKAAAATEVQA"
     gene            1157..1390
                     /locus_tag="VGD38_16075"
     CDS             1157..1390
                     /locus_tag="VGD38_16075"
                     /inference="COORDINATES: protein motif:HMM:NF024483.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEY0729599.1"
                     /translation="MRDAIEMIVKSLVDDTETVDVREVEQRNGATLIEVRVSPQDIGK
                     IIGKQGKTIRALRSLARIAGTKQNRRYLLEIVE"
     gene            1394..1921
                     /gene="rimM"
                     /locus_tag="VGD38_16080"
     CDS             1394..1921
                     /gene="rimM"
                     /locus_tag="VGD38_16080"
                     /inference="COORDINATES: protein motif:HMM:TIGR02273.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HEY0729600.1"
                     /translation="MADGGSDDLIVIARAVRTHGLKGEIVAELLTDFPERFEDVDELT
                     LVSPSGERKQVQLEDFRFQKDRVVLKLAGYDDVDQAKSLVGYDFAVPDSERVALEEDE
                     FYDWELEGCTVKAGDTNIGQVRSVMRTGGAEILVISDDSAKEQLVPLAAEIVVKIDTA
                     AKEILIDPPEGLLEL"
     gene            1933..>2614
                     /gene="trmD"
                     /locus_tag="VGD38_16085"
     CDS             1933..>2614
                     /gene="trmD"
                     /locus_tag="VGD38_16085"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: protein motif:HMM:TIGR00088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEY0729601.1"
                     /translation="MLRFDIITIFPEFFRDAIDCGIVRRARNAGLVEIVAHDLRQWTT
                     DKHHVVDDRPFGGGDGMVLKPEPIFAGVEALTGAAKREDLPPLTRVVLLSASGEVFSQ
                     RMAQELAQNSSEGDLRIVLLCGRYEGIDERVSDALVTDEISIGDYVLSGGEPAALVMI
                     DAVVRLLPGALGSETSALFESFSEGLLDYPQYTRPPEFRGMKVPEVLLSGNHAEIARW
                     RKEAALEKT"
BASE COUNT          625 a          675 c          808 g          506 t
ORIGIN      
        1 gaaattctct tcgtcgccga tgcaatgact ggtcaggacg cagttcgttc tgcggaagag
       61 tttcaccggc gcgtcggaat cacgggagtc atcctgacga aaatggacgg tgatgcccgc
      121 ggcggcgcgg cactctcgat caagcaggtt accggacagc cggtgaagtt tgtcggagtt
      181 ggggaacgtt acgacgcgct cgaacctttc tatccggatc gagtggccca gcgcattctg
      241 ggaatgggcg acgttttgtc gctgatcgaa gaggttcagt cgaaagtcga tcagagcgaa
      301 gccgaagcgc agctcaagaa gctgcagcag aacgagttta cgttagacga cttccggtcg
      361 cagttgcgcc aggtcaagaa gctcggctcg ttttcaaaga tcatgaagtt gttgcccgac
      421 cagcttctcg gcggcatggg aatgccgcag ttgacggacg agcagtcgaa gcagatggaa
      481 caggagctga aacgcactga agccatcatc gactcgatga cgtgggaaga gcgaaacgat
      541 catcgcattc tcaacgccaa tcgccggcgt cgcatcgctc gcggatcggg aacgaacgta
      601 gccagcgtca atcagctcat caagcagtac gtcgagatgc ggcagatgat gcggcaactt
      661 tccggctccg gccttttcgg cggcagtggc ctgaaaggca agatgatgcg aaagatgacg
      721 ggcatgccgg atctgagcgg gtttggtggt ggtgatgaag gcgacatgcc gccgatgcct
      781 ccgatgcctt cgttaccagg ggcggctgga ccatcgagaa agaaactgaa gaagaagaaa
      841 aagaagcgac gacgatagga gaacaatctt gttagcgatt aagttaatgc gcaccggcgc
      901 caaaaagagc ccttcgtacc gggtggttgt caaagagaag cagtcgaaac gcgacggcgc
      961 ttatctcgaa aacctgggca cctacaaccc gactcgcaac cccgccgaga tcaatctgaa
     1021 cctcgagcga gtcaactact ggatcgaaaa aggcgcgcag ccgaccgaca ccgtgcaccg
     1081 gctgatcaga gccagtgcga aggccgcggc ggctaccgaa gtacaagcct aaagagtctc
     1141 ttaacaggcg gaaaccatgc gagacgctat cgaaatgatc gttaagtcgc tggtcgacga
     1201 cacagagacg gtggatgttc gcgaagtcga gcaacgcaat ggtgccacgt tgattgaagt
     1261 gcgcgtgtcg ccacaggaca tcggcaagat tatcggtaaa cagggcaaga ccattcgcgc
     1321 cctcagatct ttggcaagaa tcgccggcac taagcagaat cgacgatacc tcctggaaat
     1381 cgtggagtga atcatggcag acggcggctc ggatgatttg attgtgatcg cccgagcggt
     1441 ccgcacccac ggattgaaag gggagatcgt agctgaactt ctgaccgact ttccggaacg
     1501 attcgaagac gtcgacgaac tgactctcgt ctctccatca ggcgaacgga agcaggtcca
     1561 gctcgaagac tttcggtttc agaaagaccg cgtcgttctg aagctcgccg gttacgacga
     1621 cgtcgatcag gcaaagtcgt tggttggtta cgacttcgcg gttcccgatt ccgagcgcgt
     1681 ggctctcgaa gaagacgagt tttacgactg ggaactcgaa ggctgcaccg tcaaagcagg
     1741 cgacacgaac atcggccagg ttcgttcggt aatgagaacc ggcggagccg agatactcgt
     1801 catcagcgac gattcggcaa aagaacaact cgttccgctc gcagcagaaa tcgtcgtcaa
     1861 aatagacact gcggcaaaag agattttgat agacccgccc gaagggctat tggagttgta
     1921 gatctttgag caatgttacg gttcgatatc atcacgatct ttcccgagtt tttccgcgac
     1981 gcaatcgatt gcgggatcgt gagacgagcg cgtaacgccg gcctcgttga aatcgtcgcg
     2041 cacgacctgc ggcagtggac cacggacaag catcacgtgg tcgacgaccg gccgttcggc
     2101 ggcggcgacg gaatggtttt gaagccggaa ccgatctttg caggcgttga ggcgctgacg
     2161 ggcgctgcga aacgcgaaga cttgccgccg ctgacgcgcg tcgttttgtt atcggcgtcg
     2221 ggcgaggttt tctcgcaacg gatggcccag gagctggccc aaaattcgtc ggagggcgac
     2281 ttgcgcatcg tgcttttgtg cggacgttac gaaggcatcg acgaaagagt gtccgatgcg
     2341 ttggtcaccg atgagatatc gatcggcgat tacgtgttgt cgggtggcga accagccgcg
     2401 ttggtgatga tcgatgcggt cgttcgtttg ttacccggcg cgttgggcag cgagacgtcg
     2461 gcattgtttg aatcgttttc agagggcttg ctggattatc cccagtacac gcggccgcca
     2521 gagttccgcg gcatgaaagt cccggaagtt ttgttgagcg gcaaccacgc ggagatcgca
     2581 cgctggcgaa aagaggccgc actcgaaaag acac
//
LOCUS       DASWTX010001055         2080 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_105183, whole genome shotgun sequence.
ACCESSION   DASWTX010001055 DASWTX010000000
VERSION     DASWTX010001055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2080
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105183"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            164..856
                     /locus_tag="VGD38_16090"
     CDS             164..856
                     /locus_tag="VGD38_16090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729602.1"
                     /translation="MFKLTKGIISALAVATLLTLSAAATFAQTTGSVTMTATVSNFVE
                     LNSGGAVTLTGNSGGSVITDGTANSPLAVVVNLGELGPSNTNSFVKLSVPVRLRSNVA
                     YQLNMVSSVAGAGATAFSLKDTDVGFGLTPAARPANLAAGADTNATPGDPTVGGSTDV
                     DGRWVFAGANSTLGAYAVSGQVLTGPRINKAVAANSNTSLTFPAIFAVKPQFYDPAPA
                     ITITAQFTIVAL"
     gene            991..1650
                     /locus_tag="VGD38_16095"
     CDS             991..1650
                     /locus_tag="VGD38_16095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729603.1"
                     /translation="MLLVSAVVCFGQSTTGTVSMSATVSKFVEINSGGAVTLTGNSGG
                     GVTTDGVNNSPLAVSINLGEVGPSNLNNFVTASVPLKLRSNAAYVLSMSATVTSSGTS
                     ASRIVASDIGFGLGTVSRAGTGVNSSATDTNATSGDPTLPANGSVNATTGRYEFTGVR
                     SNLSAFAAATTALSGPIIMNAVPRSNANGLTVPAFFAIKPQFFENGTTTISVTFTITA
                     P"
     gene            1650..>2080
                     /locus_tag="VGD38_16100"
     CDS             1650..>2080
                     /locus_tag="VGD38_16100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729604.1"
                     /translation="MKLRHLFLTIPIFLAVAQTAFAQALDISSGGQPTITGAVSGSVT
                     GSASVTNDLVVTINFGEVSPLNPNAIVKVIVPVGIRSNQPYQVSVTMSGLNNANAQAI
                     QASDVGFGIQNIRVLGGAGQTCNQSTHIIRSPFNNDPANSAT"
BASE COUNT          450 a          636 c          548 g          446 t
ORIGIN      
        1 ctcactatta tgcctgtgcg gtcgcggaaa tagggtaaag tgggccgcct gacctgctcc
       61 ggttcgcctg aatcgagcat tccctaaaaa cctttccctc agtcatcctt cacaaagctg
      121 acttgagcct actatcccca accatagagg agtaacgacg attatgttca aacttaccaa
      181 gggcatcata tcggccctgg cagtagccac cttgctcacc ctgagcgccg cggccacgtt
      241 tgcccaaact accggcagcg tcacgatgac cgcaacagtc tcgaattttg ttgaattgaa
      301 ttccggcggg gccgtcacgc ttacgggtaa ttccggcggc agtgtgatca ccgacggaac
      361 cgcaaacagc ccgcttgctg tggtcgtgaa cctcggcgaa ttaggcccaa gcaatacaaa
      421 tagttttgtg aaactgagcg taccggtcag acttcgcagt aacgttgcgt atcagctcaa
      481 catggtcagc tccgttgccg gcgccggcgc aaccgctttc agtcttaagg acaccgacgt
      541 cggttttggt ttgacgccag ccgcgcgtcc ggcaaatctc gcggcgggtg cggataccaa
      601 tgcgactccc ggcgatccga cagtcggcgg cagcacggat gtggatggcc gctgggtttt
      661 tgccggcgct aactccacgc tcggcgctta cgctgtttca ggtcaggtgc tgactggacc
      721 acgtatcaac aaagccgttg ccgcgaacag caatacaagc ttgaccttcc ccgcaatctt
      781 cgctgtcaag ccccagttct acgatcccgc cccggcgatc acgatcactg cgcagttcac
      841 gatcgtagcg ctttaatttc aaacccctct gatccaaatg gcgccggccg tcagcctgaa
      901 cgttgacggc cggacgacca tatctaacgt cccctctcaa agcttatgcc ccgctcacta
      961 atcactttca aaatctctct gctcacgctg atgctgctcg ttagtgctgt cgtttgtttc
     1021 ggacagtcaa caacgggaac tgtcagcatg agcgccaccg tttcaaaatt cgtcgagatc
     1081 aattccggcg gcgccgtcac tctcacaggc aattcgggag gcggtgtgac gacggatgga
     1141 gttaacaatt ctccgctcgc cgtgtcgatc aatctcggcg aggttggtcc aagcaacctg
     1201 aacaacttcg taactgcgtc ggtgccgctg aaactgcgaa gcaatgcggc ttatgtgttg
     1261 tcgatgagcg cgaccgttac cagttccggc acgagcgcca gcaggatcgt ggcatcggac
     1321 atcggtttcg ggttgggaac agtctcgagg gccggaaccg gcgttaattc atccgcaacg
     1381 gacacaaacg cgacttcggg cgatccgacg cttcccgcca acggatccgt gaacgcaact
     1441 accggccgtt acgagttcac cggagtcaga tcgaacctca gtgcattcgc agcggcgacg
     1501 acggcgctca gtggtccaat catcatgaac gctgtgccgc gaagtaacgc caacggtctg
     1561 accgtgccgg cgttctttgc gatcaagcct cagtttttcg agaacggcac gaccacgatt
     1621 tcagtcacct tcaccatcac ggcgccgtaa tgaaacttcg ccacttattt ctcaccatcc
     1681 ccatcttcct tgctgtcgcg cagacggctt tcgcacaagc gctcgatatc agcagcggcg
     1741 gtcaaccgac gatcaccggc gcggtgagtg gcagcgtgac cggcagcgcg agtgtcacga
     1801 acgatctggt ggtgacgatc aactttggcg aggtctctcc gcttaatccg aatgcgatcg
     1861 tgaaggtgat tgtgccggtc ggtattcgca gcaatcagcc ttaccaggtt tcagtaacga
     1921 tgtctggcct gaacaacgcg aatgcccagg cgatacaagc gtcggatgtc ggcttcggta
     1981 ttcagaacat tcgcgtgctc ggcggcgcgg ggcaaacctg taatcaaagc acgcacatca
     2041 ttcgctcgcc cttcaacaac gatcccgcta actcagcaac
//
LOCUS       DASWTX010001056         1839 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_123610, whole genome shotgun sequence.
ACCESSION   DASWTX010001056 DASWTX010000000
VERSION     DASWTX010001056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1839)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1839)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1839
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123610"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            215..472
                     /locus_tag="VGD38_16105"
     CDS             215..472
                     /locus_tag="VGD38_16105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729605.1"
                     /translation="MIVVSAMGMRPSPGYSTLIDGACEVDGQVEVFISNLDKTAPCGA
                     ALGVISYPADAVRIPRSDLPVVFHETELTCAEWVKRGTLKK"
     gene            complement(475..1746)
                     /locus_tag="VGD38_16110"
     CDS             complement(475..1746)
                     /locus_tag="VGD38_16110"
                     /inference="COORDINATES: protein motif:HMM:NF018899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HEY0729606.1"
                     /translation="MKSLSTLCVCILVTTLAFAQAGQKIAAIEVQGQQTLTAEAVISS
                     SGLKVGDTFTVEATDAAAERLLKSGLFKRVGYRTRYAGANVTITFQLEELKGQSSPVV
                     FDNFIWFSDEELTAAIVREVPSFNGTAPDIGNTNETIEKALQNLLTERKLPGNVEYNL
                     TDRGHMFRVEGVPMKICEIHFPGAKSVSEQKLIKEARSLMDPEYSRQSAKTFPGYGLY
                     PIYRELGHLRATFGAPIARPANGCEGVDLTIPVNEGAIYSWVKSEWSGNQALTVQQLD
                     EVLGMKPGEVANGKKFDQGVSEARKAYGKHGHIQVRIKPTPEYDDAASKVTFRIEVDE
                     GPQFRMGTPEFKGFSTDDIASLTKKWGLKSGAVYDQTYVTRFFREDAREVFSRIMQQR
                     QSQGKPLPNFSTTENVDRQAQTVNVLVELKD"
BASE COUNT          376 a          497 c          489 g          477 t
ORIGIN      
        1 tccgccgatg accgtaaata cctatgtcaa gcttcgattt ggcggaacaa ggccgccacc
       61 gcttccatgg actcatggtt ttctcactga aaagggattt aagttggtca tcaggactcg
      121 cgaagagttc agtgactact ggaaacgctt gacctctcca gttcctccag ggcagtgggt
      181 cccgccattg cccgagatcg atttctcaaa agaaatgatt gtcgtttcag cgatgggaat
      241 gcgcccgtcg ccgggctact cgactctcat tgacggcgcc tgtgaggtcg atgggcaggt
      301 ggaagttttc atcagtaatc tcgataaaac tgctccgtgt ggcgctgcac ttggcgtgat
      361 cagttatccc gctgatgctg tgcgaatacc tcggagcgat ctgcccgttg ttttccacga
      421 gaccgaactt acctgcgcgg agtgggttaa gcgagggacg ttgaagaaat agcttcaatc
      481 cttgagttca accagcacgt tcacggtttg agcctgacga tctacatttt ccgtggtgct
      541 gaagtttggt aacggctttc cctgcgactg tcgttgttgc atgattcgcg agaagacttc
      601 gcgcgcgtcc tcacggaaga atcgagttac gtaagtctga tcgtaaaccg cgccgctctt
      661 caacccccac tttttagtta gcgaggcaat atcgtccgtg gagaaccctt tgaactcggg
      721 tgttcccatg cgaaattgcg gcccttcatc gacctcgatc ctgaaggtca ctttcgacgc
      781 cgcgtcgtca tactcgggcg tgggttttat gcggacctgt atatgcccat gctttccgta
      841 agctttcctc gcttcgctca cgccttgatc aaacttcttt ccgttagcaa cttcgcccgg
      901 tttcatgcct aacacttcat caagctgttg gaccgttaac gcctggttgc cggaccactc
      961 gcttttgacc cacgaataaa tcgcgccttc attcaccggt atggtcaagt caactccttc
     1021 acaaccgttc gcgggcctgg caattggggc tccgaacgtt gcgcgcaggt ggcccagttc
     1081 ccggtagatc ggataaagac cgtagcccgg aaacgttttc gccgattggc gagagtattc
     1141 ggggtccatc aaactgcgcg cctctttaat gagcttctgt tccgatacgc ttttcgcgcc
     1201 ggggaagtga atctcacaaa tcttcatcgg cacgccttcg acgcgaaaca tgtgtccgcg
     1261 atcggtgagg ttgtattcga cgtttcccgg cagcttgcgt tcagtgagca ggttctggag
     1321 ggctttctcg atagtctcgt tggtgttgcc gatgtcgggc gccgtaccgt tgaaagaggg
     1381 aacttcgcga acgatcgcgg ctgtcagttc ctcgtcggaa aaccagatga agttgtcgaa
     1441 cacaacgggc gacgattgac ctttgagctc ttcgagttga aacgtaatcg tcacgttcgc
     1501 gcccgcatat cgcgtgcgat agccaactcg tttgaataga ccactcttca gcaaacgctc
     1561 agcggcggcg tcggttgctt caaccgtaaa agtatctcca acctttagac cactgctgga
     1621 gatgactgct tcagcggtca aagtttgttg accctggact tcgatggccg cgatcttttg
     1681 tcccgcctgg gcaaaggcaa gagtcgttac cagaatgcac acgcagagtg ttgacaggct
     1741 tttcatcgcg ctcagtctac tatagatgcc gcaggttttg gcggaacgag acctttacta
     1801 gggcgccttg gtgtgctcct tgaatgacgt ggagattgt
//
LOCUS       DASWTX010001057         2552 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_58575, whole genome shotgun sequence.
ACCESSION   DASWTX010001057 DASWTX010000000
VERSION     DASWTX010001057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2552)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2552)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2552
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58575"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(257..1333)
                     /gene="tsaD"
                     /locus_tag="VGD38_16115"
     CDS             complement(257..1333)
                     /gene="tsaD"
                     /locus_tag="VGD38_16115"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: protein motif:HMM:TIGR03723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEY0729607.1"
                     /translation="MLVLGIETSCDETAAALVRDGREILSSVISSQVPIHKRFGGVVP
                     ELASREHLDKIVPVVNEAFERAGLTARDVDGIAVTAGPGLVGSLLVGVSYAKAMAYAL
                     DKPFVGVNHIEGHIYSVAFENPPIEYPAEALIVSGGHTNIFLIPEPGKYKVLSRTRDD
                     AAGEAFDKVAKLLGLGYPGGPIIERLAREGNPHAVPFSLPRMGDGLPDFSFSGLKTAV
                     TKHVRESGLTPVENGGEPSQPIKDLAASFQHTVVQSLVKTMERVAEENYPRTLIIAGG
                     VACNGKLREVAKEMATRLELPVYFPSPHLSTDNAAMIAAAGTVKLQAGQSDGLDLNAD
                     VTLRLQNVDLAEEAAKRAGVRYRL"
     gene            complement(1345..1887)
                     /gene="rsmD"
                     /locus_tag="VGD38_16120"
     CDS             complement(1345..1887)
                     /gene="rsmD"
                     /locus_tag="VGD38_16120"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: protein motif:HMM:TIGR00095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052913 - 16S rRNA
                     (guanine(966)-N(2))-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HEY0729608.1"
                     /translation="MRVIAGAFKGRNLKSPPSMQVRPTSDRLRETLFNVIAAHVPDSR
                     FLDLCAGSGAVGIEALSRGAAHATFVDRSRRSCQLIESNLELCRVPEEQRDIYCSEAS
                     EFLRQWDRDLWDVVFFDPPYKDDYLKTLNILGSSKLLNENGLVIAEHHHKTELPETIG
                     RLTRTRVLKQGDSALSFYVC"
     gene            complement(1891..>2552)
                     /locus_tag="VGD38_16125"
     CDS             complement(1891..>2552)
                     /locus_tag="VGD38_16125"
                     /inference="COORDINATES: protein motif:HMM:NF012493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HEY0729609.1"
                     /translation="EVKAGHQVYVVYQLVEESEKMDLKDATRRYEYLRDIVFPRLPVG
                     LLHGKMKPAEKETVMNAFVRGEIKILVSTTVIEVGVDVPNASVMIVEHAERFGLSQLH
                     QLRGRVGRGAKKSYCVLLTSDKKTAVAEERLGIMAKTTDGFVIAEKDLEIRGPGEVLG
                     TRQSGLPEFRIGNLVRDRLLLESAKREAEAYLNKEKSPVTAKLIARITKDTRFGLAAI
                     G"
BASE COUNT          538 a          790 c          678 g          546 t
ORIGIN      
        1 cacggcaagg tattcaagga gccgtggcta cagaaatact tctccagttt cgcgtggtac
       61 aaagccgacc cggacttcac ggaagcgagc ctgacggagg tggagaagaa aaacatcgcg
      121 accattgcgg cttacgaaaa acgtgccgtc accgcgatga gcaccataga gggttgataa
      181 ggcccactaa ggcctcgcgt gacgaggccc accacttaaa atccttctta atagattccc
      241 taaatccctt ctccgcttag agacggtagc gaacccctgc gcgtttagca gcctcttccg
      301 ccaagtccac attttgtaat cgcaatgtga cgtccgcgtt caggtctaaa ccatcgcttt
      361 gcccagcttg cagttttacg gttcctgcgg cggcgatcat ggcggcgttg tcggttgaga
      421 ggtgtggtga agggaagtag accggaagtt ccagcctcgt cgccatttct ttcgccactt
      481 cgcgcagctt gccgttgcac gccacaccac ccgcgatgat cagagttcgc gggtagttct
      541 cttcggcgac gcgttccatc gtcttcacta acgactgcac caccgtgtgt tgaaaactgg
      601 cagcgagatc tttgatcggc tgcgacggct cgccgccgtt ttcaaccggc gtcagtccac
      661 tctcgcgcac gtgcttcgtg accgccgtct tcaatccgct aaaactgaaa tccggtaaac
      721 cgtcgcccat gcgcggcaac gagaacggca ccgcgtgcgg attaccttcg cgcgcgagtc
      781 gctcgatgat tggcccaccg ggataaccga gcccgagcaa cttcgcgact ttatcgaatg
      841 cctcaccggc cgcgtcgtcg cgcgtgcgcg acagcacttt gtacttgccg ggttcgggaa
      901 tcaggaagat gtttgtgtgc ccgccggaga cgatcaacgc ctcagccgga tattcgatcg
      961 gcgggttctc gaacgccacc gaatagatgt gaccctcaat gtgatttacg ccgacgaacg
     1021 gtttgtccaa cgcgtaagcc atcgccttcg cgtacgacac gccgacgagc aacgagccga
     1081 cgagccccgg accggctgtc accgcgatgc cgtcgacgtc gcgcgcggtc aggccggcgc
     1141 gttcgaacgc ttcgttaacg acgggaacga tcttgtcgag atgttcgcgc gacgcgagct
     1201 ccggcacgac gccgccgaag cgtttgtgaa tgggaacctg cgaagagatc actgacgaca
     1261 ggatctcgcg gccatcgcgc acgagcgcgg ccgcagtttc atcacaggac gtttcgatgc
     1321 ctagtactaa cattggaagg gattctagca aacgtagaag ctcaacgctg aatcgccctg
     1381 tttgaggacg cgcgtgcggg taagccgtcc aatcgtttcc ggcagctcgg tcttgtggtg
     1441 gtgctcggcg atgacgagtc cgttttcatt cagcagtttt gacgacccga gaatgttgag
     1501 ggtctttaaa tagtcgtctt tgtagggggg atcaaagaaa acaacatccc aaagatcccg
     1561 atcccactgg cgcaaaaact cggacgcctc cgaacaataa atgtcccgct gctcctcggg
     1621 cacgcggcac aactcaaggt tcgactcgat caactggcaa ctcctgcgcg accgatcgac
     1681 aaacgtcgcg tgcgccgcgc cacgcgacag cgcttcgatt ccgacagcac ccgacccggc
     1741 gcacaggtct aaaaatcttg aatcgggaac atgcgccgcg atcacgttga agagcgtttc
     1801 gcgcagtcga tccgacgtgg gtcgcacctg catcgacggc gggctcttca aatttcttcc
     1861 cttaaacgct ccagcaatca cgcgcataac ttatccaatt gcagcgagtc caaaccgcgt
     1921 atcttttgtg atgcgcgcga tcagtttcgc ggtcaccgga gatttttctt tgttcaggta
     1981 tgcttcggct tcgcgctttg cgctctccag caatagcctg tcgcgcacca aattcccgat
     2041 ccgaaactcc ggcaaacctg actggcgtgt gccgagcact tcgcctggtc cacgtatctc
     2101 gagatctttt tccgcgatga caaacccgtc ggtcgtcttc gccatgatgc cgagacgctc
     2161 ctcggcaacc gcagtctttt tgtcactcgt caacaacacg caatagctct ttttcgcgcc
     2221 ccggccgacg cgcccgcgca actgatgcag ttgcgaaagc ccgaaacgct cggcgtgctc
     2281 cacgatcatc accgacgcgt tcggcacatc aactccgact tcgatcaccg tcgtcgaaac
     2341 aagaatcttg atctcgcctc ggacaaaagc attcatcacc gtttcttttt ccgcaggttt
     2401 catcttgccg tgcagcaagc cgacggggag ccgcggaaag acgatgtcgc gcaggtattc
     2461 gtaacggcgc gtcgcgtcct tcaagtccat cttctctgat tcttcgacca actgatagac
     2521 gacgtaaacc tggtggccgg cttttacctc cc
//
LOCUS       DASWTX010001058         3827 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_12586, whole genome shotgun sequence.
ACCESSION   DASWTX010001058 DASWTX010000000
VERSION     DASWTX010001058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3827
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12586"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..934)
                     /locus_tag="VGD38_16130"
     CDS             complement(<1..934)
                     /locus_tag="VGD38_16130"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF002528.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase family protein"
                     /protein_id="HEY0729610.1"
                     /translation="MAKKLRVGVIFGGRSGEHEVSIRSARAIVESIDRKKFDVVPIAI
                     TKEGKWLPPADSAQLLPAATQPLLASSATSTTGDIALLGDPSHKGLISLQRDSQPLVA
                     QKLDVVFPALHGTYGEDGTLQGLLEMADVPYVGCGVLASACGMDKVAMKSLFVEAGLP
                     ICKHVWFLRSQWRADSAKIIRNVIRQIGFPCFVKPANLGSSVGVSRATDKSSLTKAIE
                     LAAEYDRKIIVEEEVVAREIECAVLGNDEPKASLPGEYVIYDEAARFLDYTEKYSSTG
                     NVSFVVPAPLTKAMTTRIQKMAIRAFQSIDGAGLA"
     gene            complement(952..1875)
                     /gene="rocF"
                     /locus_tag="VGD38_16135"
     CDS             complement(952..1875)
                     /gene="rocF"
                     /locus_tag="VGD38_16135"
                     /EC_number="3.5.3.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004053 - arginase activity [Evidence
                     IEA];
                     GO_process: GO:0019547 - arginine catabolic process to
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginase"
                     /protein_id="HEY0729611.1"
                     /translation="MSTEAKKAVTILGVPLGYGASMAGVDIGPAALRVARLNQRIARL
                     GYSVRDLGDMRLERPQTFPEEAEKLKYVREISNACEQLAGEVEAILEADEFPIVLGGD
                     HSIAIGSFAGAANHYRKREQTLGLIWFDAHADMNTPETTPSGNIHGMPLSALLGFGAR
                     ELTHVAGFAPKLDPALCAHVGARDVDPGERELIKKLGMRLFTMREIDERGMSACMNEA
                     LAIASKGSAGYAVTFDVDALDPGDAPGSGTLVRGGLTYREAHLGMELIAEHGGMRMLE
                     VVEINTALDVNNKTAELGVELILSALGKTIL"
     gene            complement(1884..2633)
                     /locus_tag="VGD38_16140"
     CDS             complement(1884..2633)
                     /locus_tag="VGD38_16140"
                     /inference="COORDINATES: protein motif:HMM:TIGR00266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00266 family protein"
                     /protein_id="HEY0729612.1"
                     /translation="MQIDHDSRGQGRGYQYQVLHQPSFSLAVLQLQPEQSIQAESGAM
                     VSMSANVELQSQMKGGLFGAIKRAAGGESAFLSMFTARGGPGELTLAPGAPGDIAAIE
                     LTGQPFFVQSSSYLAGDASLSIDTKWGGAKSFFSGEGLFVLLVQGQGLLLVSSFGAIY
                     RKQLRPGERYVVDTGHLVAWEGSMQYTLRKAASGFFRSLMSGEGIVAEFSGPGELLIQ
                     TRNLAALAGLLKPFFPTQGGGGGGFLSDFGS"
     gene            complement(2652..>3827)
                     /gene="asnS"
                     /locus_tag="VGD38_16145"
     CDS             complement(2652..>3827)
                     /gene="asnS"
                     /locus_tag="VGD38_16145"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: protein motif:HMM:TIGR00457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004816 - asparagine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006421 - asparaginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HEY0729613.1"
                     /translation="VVLKNAISPELFEQLKGLGQESALVIKGTVRADSRAPGGYEIDV
                     TGAEVLQQVHDYPITPKEHGTEFLMDHRHLWLRSRRQHAVLKVRHTVVQAVRNFLDND
                     GFTLADSPIFTPAACEGTTTLFEVDYFEGEKAYLTQSGQLYNEATAAALGKAYCFGPT
                     FRAEKSKTRRHLTEFWMVEPEMAYATLDDVMTLAEQFLSYIAARVLEDRQEELKVLER
                     DTSKLEAIVPPFPRVPYDEAVKMLVEGFEKGALEAKFEWGGDFGAPDETYISSQFDKP
                     VMVHHYPAEVKAFYMARDPERPELALGVDVLAPEGYGEVIGGGERATSLEFLKEQIAL
                     HQLPQEAFEWYLDLRRYGSVPHGGFGMGIERCTAWMCGIEHIRETIPFPRMLYRIRP"
BASE COUNT          816 a         1220 c          997 g          794 t
ORIGIN      
        1 gcgcgagccc cgcgccgtca atcgactgaa acgcgcggat cgccatcttc tgaatccgcg
       61 tcgtcatcgc tttcgtcaac ggcgccggaa caacgaaact cacgttgccg gtgctcgaat
      121 acttctcggt gtaatcaaga aaccgcgccg cttcgtcgta gatcacgtac tcgcccggca
      181 agctcgcttt cggttcgtcg ttccccaaca ccgcacactc aatctcacgc gccacgacct
      241 cctcttcaac aatgatcttg cgatcgtatt ccgcggcgag ctcgatcgcc ttcgtcaagg
      301 acgacttatc agtggccctt gaaacaccaa ccgaggaccc gaggttcgct ggcttaacaa
      361 agcaggggaa gccgatttgg cgaatgacgt tgcgaataat tttcgctgag tccgcacgcc
      421 actgcgaacg cagaaaccaa acgtgcttgc agatcggaag tcccgcttcg acaaacaacg
      481 acttcatcgc caccttgtcc atgccgcacg ccgacgcgag cacgccacag ccgacataag
      541 gcacgtcagc catctcaagt aatccttgaa gtgtgccgtc ttcgccgtaa gtgccatgca
      601 gcgccggaaa aaccacgtcg agcttctgtg cgacgagcgg ctgcgagtcg cgttgaagtg
      661 aaatgagacc tttgtgagat ggatcgccga gcagtgcgat gtcacccgtt gttgaggttg
      721 ccgacgaagc gagcagcggc tgtgtagctg ctggtaacag ttgggccgag tccgcgggcg
      781 gcagccactt cccttccttc gtgatcgcga tcggaaccac gtcaaacttt ttccgatcga
      841 tactctcaac gatcgctcgc gccgaacgaa tcgaaacttc gtgctcaccc gaccgcccgc
      901 cgaagatcac tccgacgcga agcttttttg ccactctact tggcccagcc tttacagaat
      961 tgtcttgccc agtgccgaca gaattaactc tacacccaac tcagccgtct tgttattaac
     1021 atcaagcgcc gtgtttatct cgacgacttc cagcatgcgc ataccgccgt gctcggcaat
     1081 caactccatg ccgagatgcg cttcacgata tgtcagtccg ccgcgaacga gcgtgcccga
     1141 tccgggcgca tcgccgggat cgagcgcgtc aacgtcgaac gtaaccgcgt aacccgcact
     1201 gcctttcgaa gcgatcgcga gcgcctcatt catacacgcg ctcatgccgc gttcgtcgat
     1261 ctcgcgcatc gtgaaaaggc gcataccgag tttcttgatc agttctcgtt cacccggatc
     1321 gacgtcacgt gcgccgacat gcgcgcacag tgcgggatcg agcttcggag cgaaacctgc
     1381 gacatgcgtc agttcccgcg cgccgaaacc gagcaaagcg gagagcggca ttccatgaat
     1441 gttccccgac ggagttgttt cgggcgtgtt catgtccgcg tgcgcgtcaa accagatcag
     1501 gcccagggtt tgttcgcgtt tgcggtaatg attggcggcg ccggcaaacg atccgatcgc
     1561 gatcgagtga tcgccaccga gaacgatcgg aaattcatcg gcttcaagta tcgcttcaac
     1621 ctcaccggca agttgttcgc acgcattact tatctcgcga acatacttta acttctcagc
     1681 ttcttccgga aacgtttgcg gccgttcgag ccgcatgtcg cccaaatccc gaaccgaata
     1741 gccaagccgc gcgatgcgtt gattcagacg cgccacacgc aacgccgctg gaccaatgtc
     1801 cacgccggcc atgctcgcgc cgtagccgag tggcaccccg aggatcgtga ccgccttttt
     1861 cgcttccgtg ctcatgcaaa aagttaacta ccgaagtcag aaaggaaacc gccgcctccg
     1921 ccgccctgtg ttggaaagaa cggcttcaac aaaccagcga gcgccgcaag gttacgagtc
     1981 tgaatcaata attctcctgg tccactaaac tccgccacga ttccctcacc actcatcagg
     2041 ctgcggaaga atcctgacgc ggctttgcgc agcgtgtact gcatcgagcc ttcccacgcg
     2101 acgaggtggc cggtgtcgac aacgtaacgt tctcccggac gcaactgctt tcgatagatc
     2161 gcgccgaagg atgacacgag caacaatccc tgaccctgca cgagcagcac aaacaatccc
     2221 tcgcccgaga agaaactctt cgcgccgccc cacttcgtgt cgatcgacag actcgcgtcg
     2281 cccgcgagat acgagctcga ctgcacaaag aacggctggc cggttaactc aatcgcggcg
     2341 atatcaccag gcgcgcccgg cgccagtgtt agttcacccg gaccaccgcg cgcggtaaac
     2401 atcgagagaa acgccgactc gccaccggcc gcacgtttga tcgcgccgaa gagtccgccc
     2461 ttcatctgcg attgaagttc tacgttagcc gacatcgaca ccatcgcgcc cgattccgcc
     2521 tgaatcgatt gctcaggctg gagctgcaac accgccagcg agaacgacgg ttgatgtagt
     2581 acctgatatt ggtagcctct tccctgtccg cgcgaatcgt gatcaatctg catctgtaac
     2641 ttctcctccg cttacggcct gatgcgatag agcattcgcg gaaacggtat cgtctcgcga
     2701 atgtgctcga tgccgcacat ccacgccgtg cagcgctcaa ttcccatccc aaacccgccg
     2761 tgcggcacgc tgccgtaacg gcgcaggtcg agataccact caaacgcttc ctgcggtaac
     2821 tggtgcaacg cgatctgctc tttcaaaaac tcgagcgagg tcgcgcgttc accgccgccg
     2881 atgacttcac cataaccctc cggcgcgagt acgtcgactc ccaaagcgag ttccggtcgc
     2941 tccggatcgc gagccatgta gaacgctttg acctcggccg ggtagtgatg aaccatcact
     3001 ggcttatcaa actggcttga aatataagtt tcgtcgggcg cgccgaagtc tccaccccat
     3061 tcaaacttag cttccagcgc gcctttttca aatccttcaa ccagcatctt aactgcttcg
     3121 tcgtaaggaa cacgcggaaa cggcggcacg atcgcttcga gtttgctggt gtcgcgttcg
     3181 agcactttca gctcttcctg gcgatcttcg agcacgcgcg cggcgatgta agaaagaaac
     3241 tgttcggcga gagtcatgac gtcgtcgagc gtggcgtaag ccatttcagg ttcgaccatc
     3301 caaaactccg tcaggtgtcg gcgtgttttc gatttctcgg cgcggaacgt cggaccgaaa
     3361 cagtatgcct ttccgagagc ggctgcggtt gcttcgttgt aaagctggcc tgactgcgtc
     3421 aggtacgctt tctcgccttc gaagtaatcc acttcaaaca gcgtcgtcgt gccttcacac
     3481 gccgcaggcg tgaagatcgg cgaatcggcg agtgtgaagc cgtcgttgtc aagaaagttt
     3541 ctcacggcct gcacgactgt gtgccgcact ttcagaaccg cgtgctgccg gcgcgaacgc
     3601 agccaaagat gacggtggtc catcaggaac tccgtcccgt gttcctttgg cgtgatcgga
     3661 tagtcgtgaa cctgctgtag aacttcagct ccggtgacgt cgatctcgta accgccgggc
     3721 gcgcgactgt cggcgcgcac agtgcctttg atcacgagcg ctgactcctg gcccagtcct
     3781 tttaactgtt cgaacagttc cggcgagatt gcattcttca acacgac
//
LOCUS       DASWTX010001059         4230 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_169902, whole genome shotgun sequence.
ACCESSION   DASWTX010001059 DASWTX010000000
VERSION     DASWTX010001059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4230)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4230)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4230
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169902"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            217..2043
                     /locus_tag="VGD38_16150"
     CDS             217..2043
                     /locus_tag="VGD38_16150"
                     /inference="COORDINATES: protein motif:HMM:NF023524.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3578 domain-containing protein"
                     /protein_id="HEY0729614.1"
                     /translation="MAIVQKSETHVKTALDNILSVCMRARRKPFGREPALWKAFEELS
                     KHLKGYASNRLTLKIKWSVGKGAWARVPWIALPDESETKSTRHGIYPVCLFREDLSGV
                     YVALNQGIDLLKDKQGAPESRRILRERAEQLRRQLPALQSLKSAGFSVDDNIDLHTNG
                     GLARDYKASIVAYKLYRRGEIPNDAQLLNDLEQLLTAYDEYLKRRPFLTLQAPALKLV
                     SDPSPQHVELSAAVHEVISYIADQGFIYEPWQIAQYIAAVRTKPFLILAGMSGTGKSK
                     LPAKIAEATGGIANLIPVRPDWTDSSEVLGYSDLEDKFRPGPVLEIAREAAANPDQFH
                     TCILDEMNLARVEQYFPEFLSKIEDRYPQANGGYQTKPVFCQTLRDSEWAKVCIPSNL
                     AMVGTVNVDESSHDFSRKVLDRAFTIELSEVHLHHWKPNGGPPRTPAKWPISWWHPIN
                     IRLRELTNATVAQLSEIDRAITALDSINEILGPAQLKVAYRTRDEVAFYVLHAQQISD
                     AFVDRKGDPVDPLDLALQMKVLPRIAGRSSAIRRCLLGLLGWATTGKPLETDDAGNEL
                     VERWEIMGRPSSLDNSNYPRLAAKLCSMWQRFDTDGYTSYWV"
     gene            2050..>4230
                     /locus_tag="VGD38_16155"
     CDS             2050..>4230
                     /locus_tag="VGD38_16155"
                     /inference="COORDINATES: protein motif:HMM:NF021352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2357 domain-containing protein"
                     /protein_id="HEY0729615.1"
                     /translation="MAELFRIETDQTRLTWSDRLTSASTEKPEGRLAITLPSHQRKNI
                     KIWRQGLPVEAANNLKVEVGPRLFEETPYDLLLESKEKRVDLKHRDPTILQSLHHSVD
                     GNTVFGGIEFRSQIGYCPFSVYVDGKHEYDFEVEVFPSKLDYATDYNVLVADLQDILT
                     ALVLEYLRSTYQLGFVTDSEGSSRIEWILLLRHVVEDLESAFQHIERRPDHDLVRERV
                     STRVEKVRRQDATLSRMILQGKGEGPESKTSSGRVLRSRLPEHRAQQTWNIPEHRWLK
                     SQLSLIRRTLAEIHVAERRSGGSNRLRQLRILEEIAKLEDRIEALLRLEFIAQAKGHA
                     SARFTSPRLQSKPGYREAYRACLILLQGLRVDGGPVGLSVKEIHTLYEYWCYLTLLRL
                     IAKITGEPIPVRELFSIEQNGLRVRLRRGTSQTVNFSTGGRVLEVAYNPEYNGDAYIL
                     PQKPDVVLTIHNPYWPAQRLIIDAKYRIETSAAYVKHFGSPGPPQASIDTLHRYRDAI
                     LDETGSDGPRSETVKRSVVEGVAVFPYADVDDQFRTSHFWTRLKRVGIGAIPLLPRET
                     RYFEEWLREVLSRTGSAAAEQTIPYESFEQLRLWQEAEKETVLVAVLKTNAREHLDWI
                     KTARCYYTAFTPSQGRQLFSRWVAIYSTTSIRKPGAVTHLASVEDYDFKKRNRIDTPW
                     SPRRSSEVQIVYELGEVRELPKPIENRGPSGLGRRFSNNRWTSRL"
BASE COUNT         1037 a         1145 c         1121 g          927 t
ORIGIN      
        1 cggcacatac ttcccatccc gcccaattac cagcaccggc gaattaacga gcgtcgtctt
       61 cacgcggatc acgtcatcag gatcaacttc ctgcgcctct acgaccgcgg caaagacgat
      121 taagacgaac aacgttagca gcttggcttt atacatttgc acgttataca caactgggta
      181 tagtatggcg atcctcaaat gacccgcgcc aacagtatgg ccatagtcca gaagtcagaa
      241 actcacgtta agactgcgct cgataatatt ctttccgttt gcatgcgcgc cagacggaaa
      301 ccttttggac gcgagcccgc gctgtggaaa gcgtttgagg agctctccaa acatctcaag
      361 ggttacgcca gcaatcgcct caccctaaaa atcaaatgga gtgtcggtaa aggcgcttgg
      421 gcgcgcgtgc cgtggatcgc tttgccggat gaaagtgaga ctaaatccac gcgccacggc
      481 atttatccgg tctgcctttt tcgtgaagat ctctcaggcg tttacgtcgc gcttaaccag
      541 ggcattgatc tattgaagga taagcagggc gcaccggaaa gtcgacgaat tctacgagaa
      601 cgcgccgaac aacttcggcg ccaactgccg gcactccaga gtctaaaaag tgccggcttt
      661 tcggtcgatg acaatatcga tcttcatacc aacggcggac tggcgaggga ttacaaagcc
      721 tcaattgtcg cctacaagtt atatcgcaga ggcgagatcc cgaatgacgc gcaactattg
      781 aatgatctgg aacagcttct cactgcttat gacgagtatc taaaacgaag gcccttcctg
      841 acgctacaag caccggcttt gaaactcgtg tccgacccgt caccgcaaca tgttgagctg
      901 tcggccgccg ttcacgaagt catctcctac atcgccgatc aggggttcat ttatgaaccg
      961 tggcagatcg cccagtacat cgctgccgta cgaacgaaac cattcctcat cctggccggc
     1021 atgagcggaa ccggcaagtc gaagttgccg gcaaagattg cagaagcaac tggaggtata
     1081 gcgaacctga tcccggttcg gcccgattgg accgacagct ccgaagtgct cggctattca
     1141 gatctcgaag ataaatttcg acctggccca gtgctggaaa tcgcacgcga ggctgccgct
     1201 aacccagacc agtttcacac gtgcattctc gacgagatga acctggcgag agtcgaacag
     1261 tattttcccg agttcctcag caagatcgaa gatcgctacc cgcaggcgaa cggcgggtac
     1321 caaactaaac cggtcttctg ccaaacgctc agagattcgg aatgggccaa ggtatgcatt
     1381 ccgtcgaatc tcgcgatggt tggcaccgtc aacgtcgatg aaagctctca cgatttcagt
     1441 cgcaaggtgc tcgaccgggc ctttacgatc gaactctctg aagtacacct gcaccattgg
     1501 aaaccaaacg gtgggccacc gcgtactccg gcgaagtggc cgatctcatg gtggcatcca
     1561 atcaacatcc gactacgcga acttacgaat gcaacggttg cgcaactctc agaaatcgac
     1621 cgcgcaatca cggctttgga ctctatcaat gagattctcg ggccagcgca gctaaaagtc
     1681 gcttaccgga cgcgtgacga ggttgcgttc tacgtcttac acgcgcaaca aatctccgat
     1741 gcgttcgtcg atcgcaaagg cgatcccgtt gatcctctcg atctcgcatt gcagatgaag
     1801 gtcctgccgc gaattgccgg ccgtagtagt gcgatcagaa ggtgtttgtt gggccttctc
     1861 ggctgggcga cgaccggcaa accgctggag accgacgacg ccggcaatga gttggtcgaa
     1921 cggtgggaga tcatgggccg cccttcatca ctcgacaaca gcaactatcc acggttagcc
     1981 gccaagctat gttcgatgtg gcagcggttc gacaccgatg ggtacacgtc ctattgggtg
     2041 tgattactcg tggctgaact cttccgcatc gaaacggacc aaacacgcct cacctggagc
     2101 gatcgtttga cgtctgcgtc aacagaaaag ccggaaggac gtcttgcgat tacgttaccg
     2161 agtcatcaac gcaagaacat caagatctgg cgacagggtt taccggtcga ggccgcaaac
     2221 aacctgaagg ttgaagttgg tccgcgcttg tttgaagaga cgccttacga tctgcttctt
     2281 gagtcgaagg aaaagcgagt ggatctgaaa catcgcgatc caacgattct ccagtctctt
     2341 caccactccg ttgacggcaa tacggttttc ggcggaatcg agttcaggag tcaaatcgga
     2401 tattgtccat tttcggttta tgtcgacgga aaacacgaat acgacttcga agtcgaggtg
     2461 tttccgagca agctcgacta cgcgacggat tacaacgtcc tggttgccga ccttcaggat
     2521 attttgaccg ccctcgttct cgagtatttg cgatcgactt accagttagg ttttgtcacc
     2581 gattcggaag gttcgtcgcg aatcgagtgg atactgttgc tgcgtcatgt agtcgaagac
     2641 ctcgagagcg catttcagca catcgaacga cggcctgatc acgatctggt tcgtgagcgg
     2701 gtgtcgacca gagttgaaaa ggtgcgccgt caggacgcaa cactctccag aatgattctg
     2761 caaggcaaag gcgagggacc tgaatcgaag acaagttcgg gacgcgtgct gcgcagcaga
     2821 ttgcctgagc accgtgcaca acaaacctgg aatattccgg aacatcgctg gctgaaatct
     2881 caactaagtc tgattcgccg aacgttggct gaaatccacg tcgccgaacg aagaagcggc
     2941 ggatcaaacc gtcttcgcca acttcgtatt cttgaggaga tcgcaaaact cgaagatcga
     3001 attgaagcac ttctgcgttt ggaatttatc gcacaagcga aaggacatgc ttcggcccgt
     3061 ttcacctcac cgcgactaca atcgaaaccg ggttatcgcg aagcttaccg cgcgtgtttg
     3121 attctgcttc agggtctgcg tgtcgatggt ggtccagtgg ggctatcggt gaaggagatt
     3181 cacacgctct atgaatattg gtgctatctc acgttgcttc gactgattgc caaaataaca
     3241 ggcgagccga tacccgttcg cgaattgttt tcgatcgagc aaaatggttt acgagtccga
     3301 ctgagaagag gaacgtcgca gacagtaaat ttttctacgg gcggccgcgt tctggaggta
     3361 gcttacaacc ccgagtacaa cggcgatgcg tacatcctgc cgcaaaagcc cgacgtggtt
     3421 ctgacgattc acaatccgta ttggcccgct cagcgactca ttatagatgc caaatatcgt
     3481 attgaaactt ctgccgctta cgtgaagcac ttcggatcgc cgggaccgcc gcaagcatcg
     3541 atcgacacgc tccaccgcta ccgtgatgca attctggatg agaccggatc ggacggaccg
     3601 cggtcggaga ccgttaagcg cagtgtggtt gaaggcgttg cggttttccc gtatgccgac
     3661 gtcgacgatc aatttcggac tagtcacttt tggacgcgcc tcaagcgcgt aggcatcgga
     3721 gcgatcccgc tgttaccgcg agagacccgg tactttgaag aatggttgcg cgaggttttg
     3781 tcacgaacag gatcggccgc cgccgaacag acaattccct acgagtcttt cgaacaatta
     3841 cgtttgtggc aggaagccga gaaagaaacg gtgcttgtcg ctgtgttgaa aacaaatgct
     3901 cgagagcatc tagattggat caaaacggcg cgatgctatt acacggcgtt tacaccaagc
     3961 cagggcagac aacttttctc acgttgggtt gccatctact cgacgacatc gattcgcaaa
     4021 cctggagcag tcacgcatct ggcatccgtt gaggattacg atttcaagaa gcgtaaccgg
     4081 atcgacacgc cgtggtctcc tcggcgcagt tcagaagtgc agatagttta tgaactcgga
     4141 gaagtgcgcg agctaccgaa accgattgaa aaccgcggcc cgagcggact tggccggcgc
     4201 ttttcaaata atcgctggac gtcgcgactc
//
LOCUS       DASWTX010001060         2748 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_12612, whole genome shotgun sequence.
ACCESSION   DASWTX010001060 DASWTX010000000
VERSION     DASWTX010001060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2748
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12612"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1203
                     /locus_tag="VGD38_16160"
     CDS             <1..1203
                     /locus_tag="VGD38_16160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729616.1"
                     /translation="RTPYSIQYSFGFQREMPGNFILEATYVGRQGRKLFSQADLAHVL
                     DFRDPASGQMMIAAFNALQAQVQAGLTGNAITAQPWFENQMFPGGTALMAGNGTLRQL
                     VLRGDTSDAIQLLYANGLLNQNVGMSAQFGTNIYVSNQGASTYDGLLTSLRKRFSHGL
                     QFDFNYTWSHSIDNGSSVVNTVVGGLVCDLRDLRVCRGNSDFDIRHLVNANFIYELPF
                     GRGRMFGSGVPGWANHIIGGWEVSGIFTARSGLPFSTTTTAFPVGFNFNSPAAFNNTN
                     VAALQGSIHDAANGTIQFFADPLDVFDPANPTAGAIRFPRHGEIGNRNVFRGPGFWNL
                     DTAVMKNFQMPWSESHSLQLRWESFNLFNHHSFGLPAVGITGTTFGTITTSASNPREM
                     QFALRYSF"
     gene            1289..2275
                     /locus_tag="VGD38_16165"
     CDS             1289..2275
                     /locus_tag="VGD38_16165"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0729617.1"
                     /translation="MVKLSLKYSSLLIALVAFSSTVHAQGGQTLFGDVRITGENNEVV
                     FKEVTLILRKVPDGEVGRQTVSSRGRYRFTNLKVGEYEIVMEAAGKEIGRLQQIMVRS
                     ELPNSPFGHQYDLEFRWRPNAAPAQPAAGVISAADLYERPSATRALFQKAEEAVSKKK
                     FDNAVGLLKQIVETDNKDFQAWTALGTVYFAQEKVADAESAYLKAIEVHPASARAQLN
                     LGRLRSSQKKFEDAVEPLTKAIELQPTSGDANYLLGECYLQLKKGSKAIPYLNEAAKL
                     GRPDAHLRLGWLYNAAGMKDKAALEYEEYLRKNPDYPERNKLKEYITANKKS"
     gene            2291..>2748
                     /locus_tag="VGD38_16170"
     CDS             2291..>2748
                     /locus_tag="VGD38_16170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729618.1"
                     /translation="MRFVFTKTFYFLAALAFVPLSFAWQRPWLAWVALAYDVALIAVA
                     IVDSRLSKLPKGFQVTRHFGSRFAMGAETEVKIDIHNASNRAVSLIVKDEYPPQMILK
                     GERQGEVKVDAHSTATLIYELTPPRRGRFEFGYVALRFRSRLNLVWCDPRV"
BASE COUNT          618 a          794 c          729 g          607 t
ORIGIN      
        1 cggaccccgt attcgatcca gtacagcttc ggcttccagc gcgagatgcc gggcaacttc
       61 atcctggaag ccacgtatgt tggccgccag ggaagaaagc tcttctcgca ggctgacctg
      121 gcgcacgtgt tggacttcag ggatccagcc tctggtcaga tgatgatcgc tgcattcaat
      181 gcattgcagg ctcaggtcca ggctggtctt acgggtaacg caatcaccgc gcagccttgg
      241 tttgaaaacc agatgttccc aggcggtacg gctctgatgg ccggcaacgg aacgcttaga
      301 cagctcgtgt tgcgtggaga cacctccgat gcgatccagc tgctctatgc caacggcttg
      361 ctcaatcaga acgtaggtat gtcggcacag ttcggcacca acatctacgt ctcgaatcag
      421 ggagcttcca cctacgacgg cttgctcacg agcttgcgga aacgcttctc gcacggcttg
      481 cagtttgact tcaactacac ctggtcgcat tcgatcgaca atggatcgag tgttgtgaac
      541 actgtggtcg gcggtctggt ttgcgatctt cgcgacctcc gcgtctgccg cggtaactcc
      601 gacttcgaca tccgccacct cgtcaacgcc aacttcattt acgagttgcc gtttggccgt
      661 ggccgtatgt tcggcagcgg cgttcctggc tgggcgaatc acatcatcgg tggatgggaa
      721 gtcagtggca tcttcactgc tcgcagtgga ctgcccttca gcaccacgac taccgctttc
      781 ccggtgggct tcaacttcaa cagcccggcg gcattcaata acaccaacgt ggcggccctg
      841 cagggcagca ttcacgatgc ggccaatggg accatccagt tctttgcgga tcccctggac
      901 gtattcgacc cggccaatcc aacggctggc gctatccgct tcccgcgaca cggtgaaatc
      961 ggaaaccgta acgttttccg cggacccggt ttctggaatc ttgacaccgc tgtcatgaag
     1021 aacttccaga tgccctggtc agaaagccac tcgctgcagt tgcgatggga atcgttcaat
     1081 ctgttcaacc atcacagctt tggcttaccg gcagttggta ttaccggaac gaccttcggt
     1141 acaatcacca cgtcggccag taatccgcgc gaaatgcaat tcgcattgcg ttactctttc
     1201 tagctcggtt tacttgtttg aatttttggg ctcctgcgaa agtgggagcc cgcttttttt
     1261 aggcgcccac ctcaatcgga gaagaacaat ggtgaaactc tccctgaagt actcgtctct
     1321 gctaatcgct ctggttgcat tctccagcac ggtccacgct caaggaggtc aaacgctctt
     1381 cggcgacgtg cgcatcactg gtgagaacaa tgaagtggtg ttcaaggagg tcaccttgat
     1441 tttgcgaaaa gtacctgacg gagaggtcgg ccgccaaacc gtttccagcc gcggacgtta
     1501 tcgcttcact aatttgaagg tcggggaata tgagattgta atggaggccg cgggcaaaga
     1561 gatcgggcgc ttgcaacaga ttatggtcag gagtgagctc cccaacagtc cgttcgggca
     1621 tcagtatgat ctcgagtttc gttggagacc gaacgctgct ccggcacagc ctgcggctgg
     1681 cgtgatctcg gcggccgacc tttacgaacg cccaagtgca actcgggcgc tctttcaaaa
     1741 agctgaagaa gccgtttcca aaaagaagtt tgacaacgcg gtcggcttgc taaaacagat
     1801 cgtcgaaaca gataacaaag acttccaggc atggaccgcg ctcggcaccg tttacttcgc
     1861 acaggagaaa gtcgcggacg ccgaaagcgc atacttaaag gcgatcgaag ttcatcccgc
     1921 ttccgcacgc gcccaactca atctcggccg cttgcgctcc tcgcaaaaga aattcgaaga
     1981 cgcggttgaa ccgttaacga aagcaatcga actgcaaccc acttccggcg atgcgaacta
     2041 cttgttaggc gagtgttatc tgcaactcaa gaaaggttcg aaagccattc catatctgaa
     2101 cgaagccgca aagctcggcc gccccgacgc ccacctgcgc ctcggctggc tctacaacgc
     2161 cgccggcatg aaagacaaag cggcgctcga atacgaagaa tacctgagaa agaaccccga
     2221 ctaccccgaa cgaaacaagc tgaaagaata tataaccgca aataagaaga gctgagctac
     2281 actgcgaaca gtgcgcttcg ttttcactaa aaccttctac ttcctggccg cgctcgcttt
     2341 tgttcctctc tcgtttgcat ggcagcgccc gtggttggcg tgggtcgcgc ttgcttatga
     2401 tgtggccctc atcgcagtgg cgatcgtcga ttcaagactg agtaaacttc ccaaaggatt
     2461 tcaggtcacg cgacacttcg gcagccgctt cgcgatgggc gcggaaaccg aagtaaagat
     2521 cgatatccat aacgcctcga accgcgccgt ctctttgatt gtcaaagacg aatacccgcc
     2581 gcagatgatt ctcaaaggcg agcgtcaagg cgaggtgaaa gttgacgctc acagcaccgc
     2641 cacactgatt tatgaactga cgccgccacg gcgcggccgc tttgaatttg gttacgtggc
     2701 gttgcggttt cgttcccggc tcaatctcgt ttggtgcgac ccgcgtgt
//
LOCUS       DASWTX010001061         2641 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_299152, whole genome shotgun sequence.
ACCESSION   DASWTX010001061 DASWTX010000000
VERSION     DASWTX010001061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2641
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299152"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(33..290)
                     /locus_tag="VGD38_16175"
     CDS             complement(33..290)
                     /locus_tag="VGD38_16175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729619.1"
                     /translation="MGKRKEQRIEIHERLIVRTASGSLPALCDACSAGDAILLSPEQA
                     SALTGIHTRTIYRRVEAGTIHYREAPNGKLTVCVKPLLHPL"
     gene            complement(376..870)
                     /locus_tag="VGD38_16180"
     CDS             complement(376..870)
                     /locus_tag="VGD38_16180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729620.1"
                     /translation="MKRILNLTALTLTAFLLLGSLTAMAVERPFALNGKGVATFITDG
                     SGNPIGANVTSTSNATHLGLCTTVGVVNYTPANDPEHPGRLLSSGSGTITAANGDTLL
                     IEFTGVLDPPAPGSATAIDKPVFRFVGGTGRFASATGTAPAVVVVNLLTGAFELTMVG
                     DIDY"
     gene            1053..>2641
                     /locus_tag="VGD38_16185"
     CDS             1053..>2641
                     /locus_tag="VGD38_16185"
                     /inference="COORDINATES: protein motif:HMM:NF027787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HEY0729621.1"
                     /translation="MSSQDNHLYEFGPYVVDARSRILLKDGVTVRLTPKAFDTLLVLV
                     QHASQVVEKEQLLKEVWPDIFVEEGSLSHNIHGLRKALGDDSAEPRYIETIPKRGYRF
                     VAPVKVSQAEPAQIGFSGLEDDAVVIEKHTYARVISDEFDEPDIPAEIHETKALTIGS
                     DQHKKRKTRVALAGGALLAVSAIAASFVYMTRPRAPVPKPPVSRAKSTLVRLTNNSAM
                     DCEPAWSPDGNRMAFWSNRDGGKEIYVMNADGSNIKRLTNNLADDVNPSWSPDGSKIL
                     FESERDGNRELYVMDPEGGNQIRLTRDNAVDSTATWSPDGSLIAFASNRDTGPPYNPY
                     NLDIYVMNADGSSVRRIVDDPEYDVGPQWSPDGRKIVFMTGRNGNFDVYDMNADGTNQ
                     RNLTADYDRSDGAPVWSLDGQNIAFSRRVDGKDQIFVMDSDGRNLKRVTHNAGNNSSP
                     AWSPDGSKLIFQTDQDGNWEIYVISVDGELSQLTDDAADDLSPDWCPDGNKIAFSSNR
                     NGKQHIYVMNSDGSSPQQITSS"
BASE COUNT          615 a          762 c          754 g          510 t
ORIGIN      
        1 caggcccgtt atcactactg agttcgattc tctcacagcg gatgtaatag cggtttcacg
       61 cacacggtga gctttccatt cggcgcctct ctgtaatgaa tcgtcccggc ttccacgcgg
      121 cgatagatgg ttcgagtatg gataccggtg agggcggagg cttgttcggg cgagaggagg
      181 attgcgtcgc ccgcggagca cgcgtcgcac agcgcaggaa gagagccgct cgccgtgcgc
      241 acgattagtc tctcgtgaat ctcgatcctc tgctccttcc gttttcccat gatctttttc
      301 gcaaggcaaa aacgaggaaa gagtgcctga aagtcccagt ctttcagaca cccttcattc
      361 cccgcggtcg tgatattagt agtcgatatc gccgaccatc gtaagctcga acgcccccgt
      421 gagcaggtta acaaccacca cggcgggcgc cgttccggtc gctgaggcaa accggcctgt
      481 gccaccgaca aagcggaaaa caggtttgtc gatagccgtc gcactacccg gcgccggagg
      541 atccagtacg cccgtaaact cgatcaggag cgtgtcgccg ttggcggcag tgatggtccc
      601 agatccactg gacagcaagc ggcccgggtg ttcaggatcg ttcgctggcg tgtaattgac
      661 gacaccgacg gtggtgcaca acccgagatg ggtcgcgttg ctggtagacg tcacgttcgc
      721 gccgattgga ttgcccgatc cgtctgtgat aaacgtcgcg acgccctttc cgttaagcgc
      781 gaacgggcgc tcgaccgcca tggcggtaag acttcccagc agtaggaaag cggttagcgt
      841 taaagccgtt aaattgagaa tgcgtttcat gagagttctc ctttgaatta atataatttc
      901 gcgaaacttg tgaccgcctt tgaagctgtc tcgcagcggc ctcgcgaatg cgccgcacga
      961 taactgcgca cgctcccgga agtcttttag gttttcttag aaatgaggtg aggaaactct
     1021 tagaggaact ttaaagaatt cttagagtca ctatgtcctc acaagacaac catttatacg
     1081 aattcggccc gtacgtcgtc gacgcgcgca gccgcattct gctcaaggac ggcgtgacgg
     1141 tccgtctcac tcccaaggct ttcgacacgc ttttggtgct ggtccagcac gcctcgcagg
     1201 ttgtggaaaa ggagcaactg ctaaaagagg tgtggcccga catcttcgtc gaggaaggaa
     1261 gtctttcgca caacatccac ggcttgcgaa aggcgttggg cgacgattcc gccgagccgc
     1321 gctacatcga aacgatcccg aaacgcggtt accggttcgt ggcgccggtc aaagtatctc
     1381 aggccgaacc cgcgcagatc ggattcagcg gcctggaaga cgacgcagtc gttatcgaga
     1441 aacacacgta cgcgcgggtc atcagcgacg agtttgacga accagacatc cctgccgaaa
     1501 ttcacgaaac aaaagccctc actatcggca gcgatcagca taaaaaacga aagacccggg
     1561 tagcattggc gggcggcgcg ttactggcgg tttcagccat cgcagcgtcg ttcgtctaca
     1621 tgacgcgacc gcgcgcgcct gttcctaagc cgcctgtatc gcgcgcgaag agcacgctcg
     1681 tccggctgac gaacaacagc gcgatggatt gcgagcccgc gtggtccccc gacggaaaca
     1741 ggatggcgtt ctggagcaat cgcgacggcg gcaaagaaat ctacgtgatg aacgccgatg
     1801 gctcgaacat caagcggctc accaacaatc tcgccgacga tgtaaaccca agctggtcgc
     1861 cagacggctc caaaatcctt ttcgaaagcg agcgcgacgg caacagagag ctctacgtga
     1921 tggatcccga aggcggcaac cagatccgcc tcacgcgaga caacgcggtc gatagcaccg
     1981 cgacgtggtc acctgacgga agtctgattg cgttcgcgag taatcgcgac accggcccgc
     2041 cgtacaaccc gtacaacctc gacatctacg tgatgaacgc cgatggatcg agtgtcagga
     2101 gaatcgtgga cgatcccgag tacgacgtcg gtccacagtg gtcgcccgac ggccgcaaga
     2161 tcgtgttcat gaccggaaga aacggcaatt tcgacgtgta cgacatgaac gccgacggga
     2221 cgaaccagcg aaacctcacg gccgattacg atcgatcgga tggcgcgccg gtctggtcgc
     2281 tcgacggtca gaacatcgcg ttctcgcgga gggtcgacgg caaggaccaa atcttcgtca
     2341 tggactctga cgggcgcaat ctcaagcgcg tgacacacaa cgcgggaaat aacagctcgc
     2401 ctgcatggtc gcccgatggc tcgaagctca tctttcaaac cgatcaggat ggcaactggg
     2461 aaatctacgt gatcagcgtc gacggcgagt tgtcccagct caccgatgac gctgctgatg
     2521 atctatcgcc cgactggtgt cctgacggaa acaagatcgc gttttcaagc aatcgcaacg
     2581 gcaagcagca catttatgtg atgaatagcg atggaagttc gccgcaacag ataaccagct
     2641 c
//
LOCUS       DASWTX010001062         2502 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_232506, whole genome shotgun sequence.
ACCESSION   DASWTX010001062 DASWTX010000000
VERSION     DASWTX010001062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2502
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232506"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1705
                     /locus_tag="VGD38_16190"
     CDS             <1..1705
                     /locus_tag="VGD38_16190"
                     /inference="COORDINATES: protein motif:HMM:TIGR02243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="putative baseplate assembly protein"
                     /protein_id="HEY0729622.1"
                     /translation="KIQLLPAHNKIFFYTWGDARCCLEKGSTSATLLDTWIVLPDEDQ
                     NGDNQYNQYKKQYKGKPEPEPEKKKERELKLKPGDVLIFEEVLGPITGLPADADPSRR
                     HAVRITSVKTGEDTLRKTKDGFPTPYVKITWAAEDALPFTFCISAIGGAPDCVYLENV
                     SVARGNVVLADHGKTQPEEPFGPVATKSTDAECECVDEAGDVRITPRRLSPALSKAPV
                     TFSAALPKEDPYQAPASAMLDQDPRAAVANVAVASEPEHSWENRYDLLASGPDDKHFV
                     VEIDNFGHAHIRFGNGTLGFQPPAGMTFNVRYRVGNGIAGNVGAESISRLVLNKTTLS
                     GVSLKIRNPLPARGGTQPEPVAEAKLFAPHAFRKELQRAIIADDYQTIAARNNKLQRA
                     AGALVWTGSWYEADVAVDPIGSQSPDESLLNEIKATLERYRRLGHDRHVETAEYVPLL
                     LSLEVCALPNYQPAHIKAALLDVFSNRTYRGGKKGFFHPDNLTFGEGIHLSKIIAAAQ
                     AVTGVECVRVKKFQRLFESANHEIANGVLPLSPTEIALLDNDPNFPEHGRLEIHMGGG
                     K"
     gene            1708..>2502
                     /locus_tag="VGD38_16195"
     CDS             1708..>2502
                     /locus_tag="VGD38_16195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729623.1"
                     /translation="MKPSKCGCTTASCGCCEGTRKITPVSTANRPGLEALTYRIGTHG
                     AFFQTMKARLANMIVEAPGPDGQTLETFYPLQGLTTRDQSDPAIALLDAWATVGDVLT
                     FYQERIANEGYLRTATERRSLVELARLIGYKPRPGVASTVFLAYTLEDSQAEPVEIPA
                     GARSQSIPGPDELPQSFETSEKLLTRREWNNLQVRLSQPQNITLDNALLIDKLYVAGI
                     NTNLKTGDVLSFIFGETGEPSVLRTVGSVATQFEQNRTEITLQPLNA"
BASE COUNT          575 a          711 c          725 g          491 t
ORIGIN      
        1 caagattcag ttgcttccgg cgcacaataa aattttcttt tatacgtggg gtgacgcgcg
       61 ttgctgtctc gagaaaggca gcacgtcggc gacgttgctg gacacgtgga tcgtgttgcc
      121 ggatgaagat caaaacggtg ataaccaata caatcagtac aagaagcagt acaaaggcaa
      181 gcccgagcct gaaccggaaa agaagaagga gcgcgagctc aagctcaagc cgggtgacgt
      241 ccttattttc gaagaagtgc tcggaccaat tactggtctg cccgcggatg ccgatccctc
      301 gcggcgtcac gctgtcagaa taacgagcgt caaaaccggc gaggacacgt taagaaaaac
      361 gaaagacggt ttcccgacgc cgtacgtcaa aatcacatgg gccgcagaag atgcgctgcc
      421 gttcacgttt tgtatttccg cgatcggcgg cgcgcccgat tgcgtctatc tcgaaaacgt
      481 tagtgtcgcg cgcggtaacg tcgtcctcgc cgatcacgga aagacgcaac ccgaagaacc
      541 gtttgggcca gtcgcgacga agtcaacgga tgcggagtgc gaatgcgttg acgaagcggg
      601 tgacgtgcga atcactccgc ggcggctgtc gcctgcgctt tcaaaagcgc cggttacgtt
      661 cagcgcggcg ttgccgaaag aggatcctta tcaggcgcca gcctcggcga tgctggatca
      721 ggatccacgg gcggcggttg cgaatgtcgc agttgcttcc gagcctgagc attcttggga
      781 gaaccgttac gacttactgg ccagcggtcc cgacgacaaa cacttcgtcg tcgagattga
      841 taactttggt cacgctcaca tcaggttcgg caacggcacg ttgggcttcc aaccacccgc
      901 cggaatgaca ttcaacgtgc gctaccgcgt cggcaacggc atcgcgggaa atgtcggggc
      961 ggagtcgatc tcgcgtctcg ttctgaacaa gaccacgttg agcggagtca gtctcaaaat
     1021 acgcaacccg ctgccggcgc gcggcggcac gcagcccgag ccggtggctg aagcaaaact
     1081 gttcgcgcct catgcgtttc gcaaagaact tcagcgcgcg atcatcgccg acgactacca
     1141 gacgatcgcg gcccgcaaca acaaactgca acgcgccgca ggcgcgctcg tgtggaccgg
     1201 cagttggtat gaagctgacg tcgccgtcga tccgatcgga agtcaaagtc ctgacgaatc
     1261 tttgctgaac gagatcaaag cgactctcga gcgctatcgg cgtttaggtc atgaccggca
     1321 cgtcgaaaca gcggagtacg tgccgctgtt gctctcgttg gaagtttgcg cgttgccgaa
     1381 ttatcaaccg gcccacatca aagcggcgct gctcgatgtg ttcagcaatc gcacgtaccg
     1441 cggcgggaaa aaaggtttct ttcatcctga caacctgacg tttggagaag gaatacacct
     1501 cagcaagatc atcgcggccg cgcaggcagt gaccggcgtt gaatgtgtgc gcgtcaagaa
     1561 gtttcaacga ctgttcgagt cagccaatca cgagatcgca aacggcgtat tgccgttgag
     1621 tccgaccgag attgcgttgc tcgataacga tccgaatttt cccgagcatg gccggctgga
     1681 aatccacatg ggcggaggta aatgaagatg aagccgagca aatgcggatg taccactgcg
     1741 agctgcggtt gctgcgaagg gacgcgcaag atcactccgg tttccaccgc taatcgtccg
     1801 ggactcgaag cgcttacgta tcgcatcggc actcacggtg catttttcca aacgatgaag
     1861 gcgcggctcg caaacatgat cgtcgaggcg cccggtcctg atggtcagac tctcgaaacg
     1921 ttttacccgc tccagggatt gaccacgcgc gatcaatccg atccggcgat tgcgttgctt
     1981 gatgcgtggg ccaccgtcgg cgatgtgttg acgttctacc aggaacggat cgcgaatgag
     2041 ggttacctgc gcaccgcaac tgaacgccgt tcgctcgtcg agctcgcgcg tctgattggt
     2101 tacaaaccgc gcccgggtgt cgcgtcgaca gtctttctcg cttacacgct ggaagactcg
     2161 caggccgagc cggttgagat tcccgcgggc gctcgctcgc aaagtattcc cggtcctgac
     2221 gagcttccgc aatcgttcga aacaagcgag aagctgctga cgcggcgtga gtggaacaat
     2281 cttcaagtcc gcctgtcaca accacaaaat atcacgctcg acaacgcgtt gctgatcgat
     2341 aagctctacg tcgcgggtat caacacgaac ctgaaaaccg gcgacgtctt gagtttcata
     2401 ttcggagaaa ccggagagcc ttccgttctc cgcacggtcg gcagtgtcgc gacccagttc
     2461 gaacagaatc gaaccgagat cacgcttcag ccattgaatg ca
//
LOCUS       DASWTX010001063         2441 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_207993, whole genome shotgun sequence.
ACCESSION   DASWTX010001063 DASWTX010000000
VERSION     DASWTX010001063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2441)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2441)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2441
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207993"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..697)
                     /locus_tag="VGD38_16200"
     CDS             complement(<1..697)
                     /locus_tag="VGD38_16200"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEY0729624.1"
                     /translation="MPSGSGFLDRKHYFVYVLMLLFFVGAVALVLWLGSDFSPAPQTA
                     TEAQGSLTANLWQNFRSPLSVLLMQIVVIIAVAGFFSRLFRRIGQPPVMGEMIAGIIL
                     GPSVLGFFFPLVMSFVFPVTSLETLRLLSQIGVVLFMFTVGMELNVRHVREKGSAAVM
                     ISHASIIVPFLLGTTLSLFLYQELAPAGTSFNAFALFIGVAMSITAFPVLARILEDRK
                     LSQTTLGSIAITCA"
     gene            788..2101
                     /locus_tag="VGD38_16205"
     CDS             788..2101
                     /locus_tag="VGD38_16205"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen-III oxidase family protein"
                     /protein_id="HEY0729625.1"
                     /translation="MTLDVAQTRTEVGNYFVSNYPPFSQWKPELVSEAIDALAQPPRV
                     ADPLGLYLHIPFCRKRCLFCYFKVYTDKKASEIEVYLDALIKENELYSRTAAFQGRQL
                     RFAYFGGGTPSYISDKQLRYLVEGLNRHVSWANAEEVTFECEPGTLNKNKLQTLKEIG
                     VTRLSLGIEHFDDEILAANGRAHLSPEIYRAYEWAREVDFPQINVDLIAGMIGETEDK
                     WREAVRRALELQPDSLTIYQMELPYNTVISQDILKKGMQSPIADWATKRRWLNYAFEE
                     FLAHGYEIAGSDIVATKKKTCRFIYRDALWHGGDMIGLGVSSFSHFGGVNFQNAHNFE
                     EYVRIINEDRLPIYRAVSLTPKQRLIREMVLQLKAGKLDIGYFQQKYGIDIWSEFRPV
                     YEDLSAKELLERANGNVELTRRGLLEVDHFLPEFFEPELRNVRYA"
     gene            2098..>2441
                     /locus_tag="VGD38_16210"
     CDS             2098..>2441
                     /locus_tag="VGD38_16210"
                     /inference="COORDINATES: protein motif:HMM:NF016693.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan 7-halogenase"
                     /protein_id="HEY0729626.1"
                     /translation="MSTNNNYAVIVMGGGPAGSSVASMLAREGRQVILFEKEVFPRHH
                     IGESLMTDTYWTFRRMGLLEKLRDSPFVRKYSVQFANPAGKESRPFYFFEAVHHESAV
                     TWQVTRAQFDHL"
BASE COUNT          576 a          659 c          705 g          501 t
ORIGIN      
        1 cggcacacgt gatagcgatc gatccgagag tggtttgcga tagcttgcgg tcttcaagaa
       61 ttcgagccag caccgggaaa gcggtaatgc tcatcgcaac cccgatgaat aacgcaaagg
      121 cgttgaacga ggttcccgca ggcgcgagtt cctggtagag aaaaagtgag agcgttgtgc
      181 cgagaagaaa cggcacgatg atgctggcgt gactgatcat caccgcagcc gagcctttct
      241 ctcttacgtg cctcacgttc agttccatgc cgacggtgaa catgaacagc acgacgccga
      301 tctgactcag cagccgcagt gtttccagcg acgtcaccgg aaacacgaac gacatcacca
      361 gcggaaagaa aaatcccagc acggatggac cgagaataat gccggcaatc atctcaccca
      421 tcacgggcgg ctggccgatg cgcctgaaca gtctgctaaa aaaaccggcg accgcgatga
      481 tgaccacgat ctgcatcaac aaaacactga gtggcgagcg gaagttttgc cagaggttgg
      541 ccgtcaaaga tccttgcgct tccgtggcgg tctgtggcgc gggactgaag tccgatccga
      601 gccagagtac gagcgcgact gccccgacaa agaagagcag catcaaaacg tagacgaaat
      661 agtgcttgcg atccaaaaaa ccggagccag atggcatgtg caacctatga attgctctgc
      721 gcgtagtaac acggattata cagcccaatt gcccatccgg cgcggttgat gctaacttgc
      781 ttgattcatg acgttagacg tagcgcaaac cagaaccgaa gtagggaatt attttgtctc
      841 gaactacccg cctttctccc agtggaagcc cgagcttgtc tccgaagcga ttgacgcgtt
      901 agcgcagccg ccgcgcgtcg ccgatccgct cggcttgtat ctgcacatcc cgttctgccg
      961 caagcgctgc ctgttctgtt acttcaaggt ctacacggac aagaaggctt cggagatcga
     1021 ggtctatctc gacgcgctga tcaaagagaa cgagctctac agccgcaccg ctgcgtttca
     1081 gggacggcag ctccgtttcg cttacttcgg cggcggcacg ccttcgtaca tcagcgacaa
     1141 gcaactgcgc tatctcgtcg aagggctgaa tcggcacgtg agctgggcaa acgcggaaga
     1201 agtcacgttt gaatgcgaac ccggaacgct gaacaagaac aagctgcaaa cgctgaaaga
     1261 gatcggcgtg acgcgtctga gcctcggcat cgaacacttc gacgacgaga ttctcgccgc
     1321 gaacgggcgc gcgcatttgt cgcccgagat ttatcgcgcc tacgagtggg cccgcgaggt
     1381 cgacttcccg cagatcaacg tcgatctgat cgcgggcatg atcggtgaaa cggaagacaa
     1441 atggcgcgag gcagtgcgcc gcgcgctcga gctccagccc gattcgctga ccatctatca
     1501 gatggagctg ccttacaaca ccgtcatctc gcaggacatt ttgaagaaag gcatgcagtc
     1561 gccgattgcc gattgggcca cgaagcgccg ctggttaaac tacgcgtttg aagagtttct
     1621 cgcgcacggc tacgagattg cgggcagcga catcgtggcc acgaaaaaga agacgtgccg
     1681 ctttatttat cgggatgcgc tgtggcatgg tggcgacatg atcgggctgg gcgtttcctc
     1741 gttttcgcac tttggcgggg ttaatttcca gaacgcacac aacttcgagg agtatgtgcg
     1801 catcattaac gaggatcgcc tgccgattta tcgcgcggtc tcgctgacgc cgaagcagcg
     1861 attgattcgc gaaatggtgc tgcaactaaa agccggaaag ctcgatattg gttattttca
     1921 acagaagtat gggatcgaca tttggtccga gtttcggcct gtttacgagg atttatcggc
     1981 gaaagagctg ctcgaacgcg ctaatggcaa tgttgaactg acgcggcgcg ggcttttgga
     2041 agtagaccat ttcctgccgg agttttttga acctgaactg agaaacgtac gctacgcatg
     2101 agcacaaaca acaattacgc cgtcattgta atgggtggtg gacctgccgg gagttccgtc
     2161 gcgagtatgc tggcgcgcga aggccgccag gtgattctgt ttgagaaaga agtgtttccg
     2221 cgtcatcaca tcggcgagtc gttgatgacc gacacttatt ggacgttccg tcgcatgggc
     2281 ttgctcgaga agctcaggga cagtccgttt gtgcgcaagt acagcgtgca atttgcgaat
     2341 cccgcgggca aggagtcgcg gccgttctat ttctttgaag ccgtgcacca cgagagcgcc
     2401 gtcacctggc aggtaacgcg cgcgcagttc gatcacctgt t
//
LOCUS       DASWTX010001064         2648 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_319526, whole genome shotgun sequence.
ACCESSION   DASWTX010001064 DASWTX010000000
VERSION     DASWTX010001064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2648)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2648)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2648
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319526"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2009
                     /locus_tag="VGD38_16215"
     CDS             <1..2009
                     /locus_tag="VGD38_16215"
                     /inference="COORDINATES: protein motif:HMM:NF015140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007154 - cell communication [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Calx-beta domain-containing protein"
                     /protein_id="HEY0729627.1"
                     /translation="GGPAVTSVTATSTNTTLLPNANLSVTGTGAVRTLQAIPFANSSG
                     ATTITVTANLTGGGTVQDTFQLTVLSVNDAPSFIKGADQTINEDAGAQTVNNWATVIN
                     AGPNEAGQTLTFNIVNDNPGLFSAAPAISASGTLTYTTAANAVGFANLTVTLSDNGGT
                     ANGGQDTSAPQTLKITVVSVNDPPSFTKGADQTVAEDPGFVSVPNWATNISAGPPNEF
                     PFVEFIVTNNTNPSLFSSAPAISNSGTLSYMPALNANGSADITIVARDFDGVLNGGVN
                     TSPSQTFKITVTAVNDAPVNNGPSAFLTNQNTSLIFTAANGSLISVSDVDAGNDPISV
                     TLTATEGTLTLSSTTGLTLSTGDGTDDATMAFSGTVTAINAALNGMTFKPTTGFSGTA
                     TLQIISNDNGRNGAGGAQSSTRSFNILVRSGGRFSFNTDTYGVNENAGTATITVLRTG
                     GLAGTASVSYATSNGTATSGASCSTGVDYLPTSGTFTWTHGDTSARQFTVTICNDASM
                     EGDETINLTLSDPTGTGSLGTQPTAVLTIGTDDGPVLLMDNTNQEAIALDLVNLTRDP
                     FSLSNPFNMSTDQRRRISLFVWQVEPLTSNDVALVTASARDTEFRTYQLQVEAVAPVM
                     RVPGVTQVVVRLPDSIIGVPRELLVKVTVKGATTNEAFIFVSGP"
     gene            complement(2011..>2648)
                     /locus_tag="VGD38_16220"
     CDS             complement(2011..>2648)
                     /locus_tag="VGD38_16220"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY0729628.1"
                     /translation="LANRGYVVLSPNFRASTGYGKKFLNAGNKAWGTGLMQHDLSDGV
                     KYLIDNGIADPKKIGIMGGSYGGYMVLAALAFKPDEFAVGVDLFGVSNWVRTLESIPP
                     YWESFRKSLYKEIGDPKKDLENLRAVSPLFHADKIVKPLIVLQGANDPRVIKPESDEI
                     VDNIKKRNGVVEYVLFDNEGHGFTKKANEIRAYKAILDFCDRYLKGAETSE"
BASE COUNT          593 a          817 c          733 g          505 t
ORIGIN      
        1 acggtggacc cgcggtaact tccgtcactg ctacttcgac gaacacaaca ctcctgccca
       61 acgcgaatct ctccgtcacc ggaaccggcg ccgtcagaac gttgcaagca atacctttcg
      121 ctaattcttc gggagcgacg acgatcacgg tcacggcaaa cctgaccggc ggcggcactg
      181 tccaggacac attccagttg actgtgttgt cagtcaacga cgcgccaagc tttattaaag
      241 gcgcggatca aacaatcaac gaagacgctg gagcacaaac agtcaacaac tgggccacag
      301 tcatcaacgc tggaccaaac gaagccggac aaacgcttac tttcaacatt gtaaacgaca
      361 accccggcct cttctcggca gcgccagcga tcagtgcttc cggcacactg acttacacga
      421 ccgcggcaaa cgccgtcggc ttcgctaatc tgactgtcac actttcagat aacggcggga
      481 ccgcaaacgg tggacaagac acgagcgctc cacagacgtt gaagatcacc gtggtctcgg
      541 tcaacgatcc tccgtcgttt accaaaggcg cggaccagac cgtcgccgaa gacccgggat
      601 tcgtaagcgt gcctaattgg gccaccaaca tcagtgctgg tccaccgaat gaattcccgt
      661 ttgttgagtt catcgtcacg aacaacacca acccgagcct gtttagttcc gctccggcaa
      721 tcagcaactc cggaacgctg agttacatgc cggcgctgaa tgcgaatggc agtgccgaca
      781 taaccatcgt cgcgagagac ttcgacgggg tcctcaacgg cggcgtcaac accagcccat
      841 cacagacgtt caagatcacg gtcaccgcgg tcaacgatgc gccggtcaac aacgggccgt
      901 ccgctttcct aacgaaccag aacacctctt tgatcttcac tgccgcgaat gggagtctga
      961 tttcggtaag cgacgtagac gccggcaacg atccgatcag cgtgacactg accgcaactg
     1021 aaggcacgct gacgctgtct tcgacaacgg gactcacgct ttcaaccggc gacggcaccg
     1081 acgatgcgac gatggcattc agcggaacgg tcactgccat caacgccgcc ttgaacggaa
     1141 tgacgttcaa acccaccacc gggttcagcg gtaccgcaac gctccagatc atcagcaacg
     1201 acaacggccg taacggcgcg ggcggtgcgc agagttctac gcgatcgttc aatatcctcg
     1261 tacgatcagg cgggcgtttc tcgttcaaca ccgatactta cggcgtcaac gaaaacgccg
     1321 gcacggcaac aatcacggtg ctgcgcaccg gcggccttgc cggcacggcg tcagtcagtt
     1381 atgcgacgtc gaacggcacc gcgacttcag gcgcatcatg cagcactggc gtcgattacc
     1441 tgccgacttc gggtacgttc acgtggacgc acggcgacac cagcgcgcgg cagttcaccg
     1501 tcacgatctg taacgacgcc tcaatggaag gcgacgaaac gatcaacctg acgctgagcg
     1561 atccaaccgg caccggttca ctcggcacac aaccaacagc cgtgctcacg atcggcacgg
     1621 atgatggacc agtgctcttg atggacaaca cgaaccagga agcgatcgcg ctcgatctag
     1681 ttaacctgac gcgcgatccg ttctcgctgt cgaacccgtt caacatgagc acggatcagc
     1741 gccggcgcat ctcgctgttt gtgtggcagg tagaaccgtt gacgagcaac gacgttgctt
     1801 tagtcacggc cagcgcgcgc gacacggagt ttcgcaccta tcagttgcag gttgaggctg
     1861 tggctccggt gatgagggtt ccgggtgtta cgcaggtggt ggtccggctg ccggacagca
     1921 tcatcggcgt gccgcgcgag ctgctcgtaa aggtcacggt aaaaggcgcg accactaacg
     1981 aagcgttcat cttcgttagt ggcccgtaag ttattcgctg gtttcggcgc ccttgaggta
     2041 gcgatcgcag aagtcgagta tcgctttgta agcgcgaatc tcgttggcct tcttcgtgaa
     2101 gccgtggcct tcgttgtcga agagaacgta ttcgacgacg ccgttgcgct tcttgatgtt
     2161 gtcgacgatc tcgtctgact ccggtttgat cacgcgcgga tcgttcgcgc cctgcaacac
     2221 aatcaacggc ttcacgatct tgtctgcgtg aaagagcggc gagaccgcgc gcaggttctc
     2281 gagatccttc ttgggatcgc cgatttcctt gtagagcgac ttgcggaacg attcccagta
     2341 aggcgggatc gactccaacg tgcgcaccca gtttgaaacg ccaaacaggt cgacgccaac
     2401 ggcaaactcg tcgggcttga acgccagcgc cgcgagcacc atgtaaccgc cgtacgagcc
     2461 gcccatgatg ccgatcttct tcgggtcggc gatgccgttg tcgatgaggt acttcacgcc
     2521 atcggagagg tcgtgctgca tgaggccggt gccccacgct ttgttgcccg cgttgagaaa
     2581 cttcttgccg taaccggtcg aggccctgaa gttcgggctg agcaccacat aaccgcgatt
     2641 ggcgagga
//
LOCUS       DASWTX010001065         1806 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_425222, whole genome shotgun sequence.
ACCESSION   DASWTX010001065 DASWTX010000000
VERSION     DASWTX010001065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1806
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_425222"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..437)
                     /locus_tag="VGD38_16225"
     CDS             complement(<1..437)
                     /locus_tag="VGD38_16225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729629.1"
                     /translation="MRRVFAVSIVICGLIVAGAMSQAGQANQDRPRNTQPAASPSPTP
                     QTQRPTGPPTLGEPPPVPRLKPTPTPTPPDVIEAGDTIKINAELVQLHVRVIDRNNRP
                     INDVPQNAFHVFEDGIAQAIETFSREEVPISYGLAVDTSGSLRS"
     gene            complement(678..1736)
                     /locus_tag="VGD38_16230"
     CDS             complement(678..1736)
                     /locus_tag="VGD38_16230"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0729630.1"
                     /translation="MHLPTRYATKFTAASISLIAAFAFSFSVRSQEPSQEKPAPATPS
                     QNQEKTPAQPAQSPDETKKKLGSELDDRSLITNTDLITLTVTVTDTYGRYVSGLSKSA
                     FAVFDNKQQQEITFFSDDDSPVSVGVIFDTSGSMSGEKVKRARDALAKFIQTSHDSDE
                     YFLIAFNSRAQLLLDRTRDGDSILNKLTFVETKSQTALYDACYLGVEKVQRGAHPKRA
                     LLLISDGQDNDSRYTYNEVRKLLKESDVTLYAIGILSGSDAGSSLGMEGQGVLDELSG
                     VSGGKAFFPRTAAEMDDIFEQIALELRHQYSIGYKPESFVNDGKWHRVKVKVTPPRGL
                     PRLFVRSKEGYYATAGAR"
BASE COUNT          352 a          524 c          545 g          385 t
ORIGIN      
        1 gaacggagcg agcccgacgt gtcgacggcc aggccgtaac tgatcggcac ttcctcgcgt
       61 gagaacgtct cgatggcttg ggcaatgcca tcttcaaaca cgtggaaagc gttctgcggc
      121 acgtcgttga tgggccggtt gttgcggtcg atcacgcgga cgtgaagctg gaccagttcg
      181 gcgttgatct tgatggtgtc gccggcctcg atgacgtcgg gcggcgtcgg cgttggggtc
      241 ggcttgagac gtgggaccgg tggcggttcg ccgagcgtcg gcgggccggt cggacgttgg
      301 gtctgcggcg tcgggctcgg agacgcggcc ggctgcgtat tgcgcgggcg atcctggttg
      361 gcctggccgg cctggctcat cgctcccgcg acgatcagac cacagataac aatggaaact
      421 gcgaaaactc ttctcatgtc acacgaaacg ctcctcgaac ccttatatcg ggaacgggag
      481 cgctggggca agcagtgtcg ctacggcgac tccacgcacg gtgaacagat gcacccgaac
      541 taacacttag ttgccggaac cgtctccaag cggttctaaa tcccaccaac gaagttggtg
      601 gttcgttcat acccaaccta ccaacgacta ccccggacgc ccaatcccac caacgaagtt
      661 ggtggttcgt tcatacccta cctcgcgccg gccgtggcgt agtagccctc cttggaacgc
      721 acgaacagcc gcggcagacc acgcggcggt gttactttca ccttcacccg gtgccacttc
      781 ccgtcattaa caaacgactc cggtttgtaa ccaatcgagt actggtgccg caactcgagc
      841 gcgatctgtt cgaagatgtc gtccatctcg gcggctgtac gcgggaaaaa cgccttccca
      901 cccgacacgc ccgaaagctc gtcgagcact ccctggcctt ccataccaag cgaactgcct
      961 gcgtcactgc cgctcagaat accgatcgca tacagcgtca cgtccgactc tttcaaaagc
     1021 ttgcgcactt cgttgtacgt gtagcgcgag tcgttatcct gcccgtcgct gatcagcaac
     1081 agcgcccgtt tcgggtgcgc gccgcgctgg accttctcaa cgccgagata acacgcatca
     1141 taaagcgccg tctggctctt ggtttcgacg aaagtgagct tgttgagaat cgagtcgccg
     1201 tcgcgagtgc ggtcgagcaa caactgggcg cgcgagttaa aggcgatcag aaaatactcg
     1261 tcggagtcgt ggctggtctg aataaacttg gccagcgcgt cgcgggcgcg tttcaccttt
     1321 tcgccgctca tggagccgga agtgtcgaaa atgacgccca cggaaaccgg cgagtcatcg
     1381 tcgctgaaga aggtgatctc ctgttgttgt ttgttgtcga aaacggcgaa ggcgcttttg
     1441 ctcaggccgg agacgtaacg tccgtaggta tcggtgaccg tgacggtgag cgtgatcagg
     1501 tcggtgttgg tgatcagcga acggtcgtcg agttcggacc cgagtttctt tttggtctcg
     1561 tccggcgatt gggccggttg cgctggcgtt ttttcctggt tttgcgaagg agttgccggg
     1621 gccggtttct cctggctcgg ctcctggctt cttaccgaaa acgaaaacgc aaacgcagcg
     1681 atgagcgaaa tggaagctgc cgtgaacttg gtggcgtaac gagtcggtaa atgcatgtca
     1741 cccccggcta cgattcttcg attcaatttt tacagacaac cggtcaggct cgtagggaac
     1801 tgtcaa
//
LOCUS       DASWTX010001066         2449 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_345683, whole genome shotgun sequence.
ACCESSION   DASWTX010001066 DASWTX010000000
VERSION     DASWTX010001066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2449)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2449)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2449
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345683"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(118..1731)
                     /locus_tag="VGD38_16235"
     CDS             complement(118..1731)
                     /locus_tag="VGD38_16235"
                     /inference="COORDINATES: protein motif:HMM:TIGR04514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GWxTD domain-containing protein"
                     /protein_id="HEY0729631.1"
                     /translation="MSYQKVALRLALITASAFLASPAVLTQEQQDPTNKPRNVKPELK
                     KAYKDWLDKDVTYIITDEERKAFKKLATDDERERFIEEFWRRRDPDPDTEENEFKEEY
                     YERIAYANEHFSSGIPGWKTDRGRIYIMYGKPDERETHPMGGSYQRPSWEGGGSTTTY
                     PFEIWFYRYIAGVGSGIEIEFVDPTGSGEYRIARNANEKDAMLMVPGAGLTLSEQLGL
                     SSKADRIAGIGGVGAMNYQREQDSPFSRLQLLADLSRPPQVKFNDLATAVNTGVVEEN
                     PLNFDLRIDFFRQSDERVITAFTIQAENKDLVFTDSGGLQQARMNIFARITSVAGRRV
                     GIFEDPVITTATAEELTEARGRKSAYQKAVPLAPGTYKVDVIVRDVESGATGLKQLGF
                     TVPRYDQEKLSTSTMILAAKLESLVDQPAVGQFVIGTTKVIPNVSGIYHRGQAVGVYL
                     QIYNAGIDQTTLRPSVDVEYALLKDGKEVGKQAEDWKGLSDSGQRLTLARLIDTRQLP
                     VGEYEVAIRIRDRVTGQSLSPSQKFSVVQ"
     gene            complement(1913..>2449)
                     /gene="tatC"
                     /locus_tag="VGD38_16240"
     CDS             complement(1913..>2449)
                     /gene="tatC"
                     /locus_tag="VGD38_16240"
                     /inference="COORDINATES: protein motif:HMM:TIGR00945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEY0729632.1"
                     /translation="EPFSLYIKVSLYMAICVSVPFLLFQIWGFVAPGLYPHERAYVTP
                     FILLSSISFVLGAAFAYYILFPPAAKDLLGLGSDFRLLLKADEYFDFIIIVMLGMGVV
                     FQMPAITYVLARIGLVTAGFLVRVWKTAMIVIMISAAVLSPTSDVPNMLLFAAPMIVL
                     YVVSIFVAWIFNKPRTST"
BASE COUNT          543 a          673 c          706 g          527 t
ORIGIN      
        1 tgtttgcggc tgcaagcgaa ccgaagaagc ttctaatcgt tcccggcggc ggtcacaacg
       61 ttttcggctc tgccggaacg aactacctgg accaggtcga agagtttatt cggcgcgcta
      121 ctgaaccacg ctgaacttct gcgacggcga caacgactgt cccgtcacgc gatcgcgaat
      181 gcgaatcgcg acttcgtact cgccgaccgg gagttgacgc gtgtcgatca ggcgagcgag
      241 cgtcaggcgc tggccggagt cgctcagacc tttccagtct tcagcctgct tgccgacttc
      301 cttaccgtct ttcagcaaag cgtattcgac gtcgactgac ggacgcagtg tcgtctggtc
      361 gatgcccgcg ttgtaaatct gaagataaac gccgacggcc tgaccgcggt gataaatgcc
      421 cgagacgttt ggaatgacct ttgtcgtgcc gatgacgaac tggcccaccg cgggttggtc
      481 cacgaggctc tccagcttcg ccgcgagaat catagtcgaa gtcgagagtt tttcctgatc
      541 gtagcgcgga acagtgaaac cgagttgttt caaaccggtc gcgcccgact caacgtcacg
      601 aacgatcacg tcgactttgt acgtgcccgg agcgagtgga accgccttct gatacgcgga
      661 ctttctgcct ctggcttccg tgagctcctc ggcagtcgcg gtcgtgatga ccggatcttc
      721 aaagatgccg acgcggcgtc ccgcgactga agtgatgcgc gcgaagatat tcatacgcgc
      781 ttgctgtaga ccaccgctgt ccgtgaaaac gagatctttg ttctcggcct gaatcgtaaa
      841 ggccgtgatc acgcgttcgt ctgactgccg gaagaagtcg attcgcagat cgaagttcag
      901 cgggttctct tcgacgacgc cggtgttaac cgcggtggcg agatcgttga acttcacttg
      961 cggcggacgg ctcaggtccg cgagcaattg caggcgtgaa aacgggctgt cctgttcacg
     1021 ctgataattc atcgcgccga cgccgccgat gcccgcgatg cggtcggctt tgctgctcaa
     1081 accgagctgt tccgacaaag tgagaccagc gcccgggacc atcagcatcg cgtctttttc
     1141 gttcgcattt cgcgcgatgc gatactcgcc gctgcccgtg ggatcgacga attcgatctc
     1201 gatacccgag cccacgccgg cgatgtagcg atagaaccaa atctcaaacg gataggtcgt
     1261 ggtcgagccg ccgccttccc aggacgggcg ttggtaagag ccacccatcg ggtgggtttc
     1321 gcgctcgtcg ggcttgccgt acatgatgta gatacggccg cggtcggttt tccaaccagg
     1381 gatgcccgag ctgaagtgct cgttcgcgta ggcgatgcgc tcgtaatact cttccttgaa
     1441 ttcgttttct tcggtgtccg gatccggatc gcggcggcgc cagaattctt cgatgaagcg
     1501 ctcgcgctcg tcgtcggtgg ccagtttctt gaaagctttc cgctcttcgt cggtgatgat
     1561 gtaggtaacg tctttgtcga gccagtcttt ataagctttc ttgagttctg gtttgacgtt
     1621 ccggggtttg ttggtcggat cctgctgctc ttgtgtcaaa actgcggggc tggctaaaaa
     1681 cgctgatgcg gtgatcaaag ccagacgcag agcaactttc tggtaagaca ttacgaaact
     1741 cctatgagac agttgacgat acgagctata cggactgctg ccggataccg gtttgaagac
     1801 tcagaattct aagcttgcgc tgagaacaga gtcaaggatg cggtcacgga cgaggtaagt
     1861 tgcccgaaag taagtaaaac cacggcaatt attgagtttt acggcttctg tctcaggttg
     1921 acgttcgcgg cttgttgaat atccaggcca cgaagatcga gaccacgtaa agcacgatca
     1981 tcggcgcggc aaacaacagc atgtttggga cgtcgctggt cggcgaaagc acggcagcgg
     2041 aaatcatgat cacgatcatc gccgttttcc aaactctcac cagaaaacca gccgtgacca
     2101 gaccgatccg cgccagaacg taagtaatcg ccggcatctg gaagacgacg cccataccga
     2161 gcatgacgat gatgatgaag tcgaaatact cgtcggcttt gagcaacagg cggaagtcgc
     2221 ttcccaaacc gagcaggtct ttggcggccg gcggaaagag aatgtaataa gcgaacgccg
     2281 cgcccagtac gaaagagatc gacgacaaaa gaataaacgg cgtcacgtac gcacgctcgt
     2341 gcggataaag accgggcgcg acaaatcccc aaatctgaaa cagcagaaac ggcaccgaaa
     2401 cgcagatcgc catgtagagc gagactttta tgtagaggga aaacggctc
//
LOCUS       DASWTX010001067         3477 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_12645, whole genome shotgun sequence.
ACCESSION   DASWTX010001067 DASWTX010000000
VERSION     DASWTX010001067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3477)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3477)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3477
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12645"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(55..1641)
                     /locus_tag="VGD38_16245"
     CDS             complement(55..1641)
                     /locus_tag="VGD38_16245"
                     /inference="COORDINATES: protein motif:HMM:NF013146.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729633.1"
                     /translation="MKTYFALFLIATVASLITTPLIRRLCQRFKLLDIPTDGRRVHRT
                     ATPRLGGLALYFSCLTALSLLPFLDNLLTQTLRNLDTEFLTIFIPATLVLLLGAYDDL
                     RGTNAIFKFTGLAIIATIFYALGGRIDALSIPLFGSVELPPLLSFLLTVVWLVGITNA
                     FNLIDGLDGLASGAALFSSLVILGVSVSQDRPLMIVISLVLCGAVAGFLRYNFNPASI
                     FLGDSGALFIGFLLAAMSVLGTQKASTAVAIFVPVLAFGFPVVDTAMTMGRRLISRKP
                     VFQGDNEHIHHMLLARGWSQRRVALVLYAVCAAFGLLALIFPASGPKLTGFMMFVISV
                     AVIIAVGHRRDHEVDEIRAGVKRNIADRRLRVANNIRVRRAALALSKASDLHEMFEAV
                     RHLLDFGEFTFANAQVGQAGRAEINERAFQASLHRHPKQGLEFRNGRVSWSWSREGDE
                     GDPSRAEWSFRLPLVKDGVEWGWLNFYHSMDGEALLVDTNYLSDLFRREFTDAAARIF
                     TGHEEQEVAPVMAMSMAAKG"
     gene            complement(1532..2824)
                     /locus_tag="VGD38_16250"
     CDS             complement(1532..2824)
                     /locus_tag="VGD38_16250"
                     /inference="COORDINATES: protein motif:HMM:NF024968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY0729634.1"
                     /translation="MKVLLLNQCFYPDVVSTAQYLTELATELSARGHDVTVIAGDRGY
                     DDPSLRFPRRETWNNIEIIRIPTLSLGKSSRWQRVLNFASFAIVCAQKLLLLRRFDVV
                     VALTSPPLISFLGALFVRLKGGSFCFWVMDLNPDEAIAAGWLAEGSVVTRCFQWMLRF
                     SLKHSTQTIVLDRFMRDRVLAKGADARRVVVIPPWSHDDAVEFSVEGREAFRREHGLS
                     DRFVVMYAGNHSPCHPLDTLLEAALRMKDRDDVAFCFVGGGSEQGKVRDFALRHGLSN
                     VKCLPYQPLDQLAGSLSAADLHVVVMGDAFVGIVHPCKIYNIMAVGAPALYIGPQPSH
                     ITDLASQTIFLTRHGDVDRVVESVVLARAQQFRASGGKHLGNFSKQMILPQLVNAIGG
                     NSFENLFRPLPDSDSSFVDYHAAHPAAVSTVQATRHPN"
     gene            complement(2821..>3477)
                     /locus_tag="VGD38_16255"
     CDS             complement(2821..>3477)
                     /locus_tag="VGD38_16255"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY0729635.1"
                     /translation="INMLGLAKRVRARILQASTSEVYGDPLVHPQTEDYWGNVNPIGL
                     RSCYDEGKRLAETLMTDYHRQNNVDIRVARIFNTYGPRMLEDDGRVVSNFIVQALRGE
                     PLTLYGEGQQTRSFCYVDDLVEGLIKLMNVEGVHEPVNLGNPGEFTIKQLAEEVQAIC
                     GTKTGFKYLPLPADDPKQRKPDISRAQKLLKWNPTIPLHEGLEKTVDDFRKRVSGPKI
                     "
BASE COUNT          857 a         1068 c          915 g          637 t
ORIGIN      
        1 cgtgataatc acgactgaaa caagcagcgc aaaaattatc ttgtctaaca acagctaccc
       61 cttcgcggcc atgctcatcg ccatcaccgg cgcaacttcc tgctcttcat gccccgtgaa
      121 gatgcgcgcg gcggcgtcgg taaactcacg gcggaaaagg tcgctcaggt aatttgtatc
      181 gaccagcaac gcctcaccat ccatgctgtg gtagaagttg agccagcccc attcaacgcc
      241 atccttaacc agcggcaagc ggaacgacca ctccgcgcgc gaaggatcac cctcatcacc
      301 ctccctggac cacgaccacg acacacgccc gttgcgaaac tccagcccct gcttcggatg
      361 tcgatgcaga ctcgcctgga acgcgcgttc attgatctca gcacgcccgg cctgtcccac
      421 ctgcgcgttc gcaaaagtaa actcgccgaa gtcgagcaga tgacgcacgg cttcaaacat
      481 ctcgtgcagg tccgacgctt tcgataacgc cagcgccgcg cggcgcacgc gaatgttgtt
      541 cgccacgcgc agacgccgat cggcaatgtt ccgtttcacg cccgcgcgta tctcgtcgac
      601 ttcgtgatca cgccggtggc ccaccgcgat gatcaccgcc accgagatca caaacatcat
      661 gaagcccgtc agctttggac cactcgcggg aaagatcagc gccagcaacc cgaacgcggc
      721 gcaaacggcg taaagcacga gcgcgacgcg acgctgcgac cagccacgcg cgagcagcat
      781 gtgatggatg tgttcgttgt cgccctgaaa caccggcttg cggctgatga gccggcggcc
      841 catcgtcatc gccgtgtcga ctaccggaaa cccgaacgcg agaaccggta caaagatcgc
      901 gaccgcggtt gaagccttct gcgttccgag caccgacatc gccgccaaca gaaacccgat
      961 gaatagcgcg ccggaatcgc cgagaaagat cgacgccgga ttgaagttgt aacgcaaaaa
     1021 acccgcgacc gcgccgcaca gcaccaacga gatcacgatc atcagcgggc ggtcttgcga
     1081 aaccgagacg ccgagaatca ccagcgacga aaacagcgcg gcgccggacg cgagaccgtc
     1141 gagcccgtcg atcagattga aagcgttcgt aatcccgacg agccacacga cggttaagag
     1201 aaacgagagc agcggcggca attccaccga accaaacagc ggaatcgaga gcgcgtcgat
     1261 gcgtccgcca agtgcgtaaa agatcgtggc aatgattgcg aggccggtga atttgaagat
     1321 agcattcgtg ccgcgcagat cgtcgtaagc gccaagcagc aacaccagcg ttgcgggaat
     1381 aaaaatggtt aagaactctg tgtcgagatt gcgtagtgtt tgtgtgagca ggttatcgag
     1441 aaacgggagt aacgaaagtg cagtgagaca agagaaataa agtgcgagac cgccgagtcg
     1501 cggcgttgcg gtgcgatgga cgcgccggcc gtcagttggg atgtcgagta gcttgaaccg
     1561 ttgacacagc cgccggatga gcggcgtggt aatcaacgaa gctactgtcg ctatcaggaa
     1621 gagggcgaaa taggttttca aacgaatttc ctccgatggc gttgaccagt tgcggcaaaa
     1681 tcatttgctt tgaaaaattc cctaaatgtt ttcctccgct cgctctaaat tgctgcgcgc
     1741 gcgctaacac aacactctcg accacacgat cgacatcacc gtgacgtgtc agaaaaatag
     1801 tctgcgaggc gagatcagtg atgtgactgg gctgtggtcc gatgtagagc gcgggcgcgc
     1861 cgacggccat gatgttgtag atcttgcacg ggtgaacgat gccaacgaac gcatcgccca
     1921 tcacaacaac gtgcagatca gccgccgaca acgaaccagc aagctggtcc aacggctgat
     1981 acggcaaaca cttcacattg ctcaacccgt gtcgcaaagc aaagtcacgc accttccctt
     2041 gctcgcttcc accaccgaca aaacaaaacg caacgtcatc ccgatctttc atccgcagcg
     2101 ccgcctcgag caacgtgtca agcggatgac acggactatg attcccggca tacatcacga
     2161 caaaccgatc actcaacccg tgctcgcgcc gaaacgcttc cctgccctct accgaaaact
     2221 caaccgcatc gtcatgcgac cacggcggaa taactacgac ccgccttgca tcagcgccct
     2281 tcgccaagac tcgatcgcgc ataaatcgat ccaacacgat cgtctgcgtc gagtgtttca
     2341 agctgaagcg cagcatccac tggaagcaac gcgtaaccac agaaccttcc gcgagccaac
     2401 ccgccgcaat cgcctcatcc ggattcaagt ccatcaccca gaaacagaac gacccgcctt
     2461 tcaatctcac aaacagcgca ccgagaaatg agatcaacgg cggcgacgtc aacgccacaa
     2521 ccacatcaaa tcgccgcaac aacagcaact tctgcgcgca aacgatcgca aagctcgcaa
     2581 aattaagcac acgctgccaa cggctgctct tcccgagcga caacgtcggt atgcggatga
     2641 tctcaatgtt gttccacgtt tcgcgccgcg gaaaacgcaa ggaaggatcg tcgtaaccgc
     2701 gatcgcccgc gatcacagtc acgtcatgcc cacgcgcaga gagctctgtt gcgagttcgg
     2761 tgaggtattg tgctgtcgaa accacatcag ggtagaaaca ctggttgagt agcaggacct
     2821 tcaaatcttc gggccgctga cgcgtttgcg aaaatcgtca acggtttttt ccaaaccttc
     2881 gtgcaaagga atcgtcgggt tccacttcaa cagcttttgc gcgcgcgaga tgtcgggctt
     2941 tctctgtttc ggatcgtccg ccggcagcgg caggtacttg aatcccgtct tcgtgccgca
     3001 gatcgcctgc acctcttccg cgagctgctt gatcgtaaac tcacccggat taccgagatt
     3061 taccggttcg tggacgccct cgacgttcat gagcttgatt agtccttcga ctaaatcatc
     3121 aacgtaacag aatgagcgtg tctgctggcc ctcaccgtag agtgtcaacg gctcgccccg
     3181 gagagcctga acgatgaagt ttgaaactac gcggccatcg tcttccaaca ttcgtggtcc
     3241 atacgtgttg aagatgcgcg cgacgcgaat gtccacgttg ttctgccggt gatagtcggt
     3301 catcaacgtc tccgcgagcc gcttgccttc gtcataacac gaccgcagac cgatgggatt
     3361 gacgttcccc cagtagtctt ctgtttgagg gtggacgagt ggatcaccgt agacttcgga
     3421 agtcgaggcc tggagaatac gagcgcgcac acgcttggcg aggccgagca tgttgat
//
LOCUS       DASWTX010001068         5855 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_186078, whole genome shotgun sequence.
ACCESSION   DASWTX010001068 DASWTX010000000
VERSION     DASWTX010001068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5855)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5855)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5855
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186078"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2516
                     /locus_tag="VGD38_16260"
     CDS             <1..2516
                     /locus_tag="VGD38_16260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729636.1"
                     /translation="RSLIRWGSDGLAFHTSGNQVFFFRTPSMHPYPTDNPTFTTRPDG
                     VRKFSLAANDIVYNPVDQLIYATVPSASGGIGNSIAAVNPTTGLVGQPVFVGSDPFKL
                     GLSSDGKILYTTLLGAPLVRKYDITAKTPGIQFGLGGDFIHGPFYGDNLAVAPGNPDM
                     VAASCYLPDVSGGAGVVLTNDGVVLPGSTFGESLVFSGSHLYTFTHDTTEYGLRKLAV
                     NSTTGLSEVNFVTNLVNGFGQRIAAAGGRIFGSDGAVADADSVTLTGKFKRNDPGVWV
                     APDPANNRVYFLGLHDFVQTSLVVTSYDATTYLQVGSLTLQNIIGADDVPRTFIRYGT
                     DGLAFTTSEGEIVFLSTSMLAPLSATPVPTPVQVTPEIKQIPLTTGGLVYNSADGMIY
                     ASVPSRTDGFGNPITFGNSIVPINPATGTLGQPVHVGSEPKRLIITPNGQHIYAALDG
                     AGSVARVDMATKTVGLRFSLGNDAPSRGPRFVEDMNLAPGSVSTLAISRMHKNGIPRH
                     TGVAIYDNGVQRPNTTSAEFPSHFDNNNAIEYSSSPSTIYGYNLESNTQHFHKLTVNA
                     SGVQVTTTVQNPFNVGDFVFDSGLLYANGGQIINPETATIVGSYSGLSNGNHFVIPES
                     STDRIYFLDDNLFGTVTIRVYRQSTRALIGTMTVPNVRGFPSSFIRWGTNGLAFKVTS
                     DILALSSQVYLITLPPALTPPPVQTGPIELLLDSSGPAADQVASLDSVLLVRDPFQVI
                     NPANLWTPSNDRNTRVVVFARNLQLAQGEPASSVVVNLVDAASQNHDVPAEDVRAVPN
                     TDFVQVIFRLPNNLAVGTCSVKIKAQTRTSNTGTMRIKS"
     gene            complement(2543..2746)
                     /locus_tag="VGD38_16265"
     CDS             complement(2543..2746)
                     /locus_tag="VGD38_16265"
                     /inference="COORDINATES: protein motif:HMM:NF018096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1059 domain-containing protein"
                     /protein_id="HEY0729637.1"
                     /translation="MSASPTQQPRKFIDCREYPSEKNCSVKISGSEDEVLELAVLHAA
                     SYHGHENSDELRDEIRKLLKDEG"
     gene            2862..3014
                     /locus_tag="VGD38_16270"
     CDS             2862..3014
                     /locus_tag="VGD38_16270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729638.1"
                     /translation="MGRSEEFDRDGDADVKKVVTKTAPLGYLPLLYLAMSLIFILAVL
                     FLWWRG"
     gene            complement(3011..4033)
                     /locus_tag="VGD38_16275"
     CDS             complement(3011..4033)
                     /locus_tag="VGD38_16275"
                     /inference="COORDINATES: protein motif:HMM:NF040149.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5700 domain-containing putative Zn-dependent
                     protease"
                     /protein_id="HEY0729639.1"
                     /translation="MKLRLICCFLLVLVAQTSAAAAVNVQLVTDEAEAVLAILTKKKA
                     GETIAEADWQRVFQSEGYARLKQRETSMKRPFEETDFKTFVLSDQLAAKLPELTETLA
                     RWRQADLTRAAGLALAYLPKDASIRAKIYPVIKPRDNSFVFDVKNDPAIFLYLDPAVS
                     REKFENTLAHELHHIGYGSTCPRKDVSAQIEKLDPKMQRVIGWTGAFGEGFAMLAAAG
                     GPNVHPHAVSKADERARWDKDVANFNEDLKKVDAFFVEILENKLNADQIREKGFSFFG
                     VQGPWYTVGWRMSVLIEKTYGRAKLIECMCDQRLLLSTYNRAAAKHNRTARTPLALWS
                     PAVVTN"
     gene            4168..5541
                     /locus_tag="VGD38_16280"
     CDS             4168..5541
                     /locus_tag="VGD38_16280"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEY0729640.1"
                     /translation="MLLRREMRERRIPGLQAAVVKNGKIVLLSALGTADLQSTAPVSN
                     NSVFGIYSCTKAFTGVAIMQLVEDGKLDLSAPVSRYLDGLPDAWQPVTIRQLLTHVSG
                     LPNILRALDPVSYGYPSGANEEAVWAKTKAMPMEFTPGERFSYNQTNYALLGKIIDKL
                     NGKPFAQVFRERQFDVAAMSHTGFGDSRDVIPNMVRTYRYVNRSDGEKLSAEKLVHDY
                     VEFPPFRRTASGMNSTAEDLARWVTALQQSKLLRTKSALKTLWTAGNVNNSSAPQWAL
                     GWVTKPRPQHSAVTATGGGRTAIFVYPEDDLAVIVLTNLAGSFPEEFVDELAGIYNPA
                     IPASDPVTALRMQLRERGYEHAIAVFNELKRKNPAFQPLERDLNDWAYRMLNGGGKPK
                     EALEIFKLNVHLYPASSNVYDSVAEAYAALGHLTLAIQNYKRSLQLDPKNTNAVQQLK
                     KLDPSFK"
BASE COUNT         1253 a         1736 c         1588 g         1278 t
ORIGIN      
        1 cgcgcagctt gattcgctgg ggaagcgacg gactggcttt ccacaccagc ggcaaccagg
       61 tctttttctt ccgcacgccg tcgatgcacc cgtacccgac ggacaaccca acgttcacca
      121 cgcgcccgga cggagtgcga aagttctcac tcgcagcgaa cgacatcgtc tacaacccgg
      181 tcgatcagtt gatctatgca actgtgccga gcgcttccgg cggcattggc aacagcatcg
      241 ctgcggtcaa tcccacaacg ggattggtgg gccaaccggt gtttgtcggc agcgatcctt
      301 tcaaactcgg gctctcgagt gacggaaaga ttctttacac cacacttctc ggcgctccac
      361 tcgtgcgaaa gtacgacata accgccaaaa cgcccgggat ccaattcgga ctcggcggcg
      421 atttcattca tggaccattc tacggtgaca atctcgcggt agcgccgggt aatccggaca
      481 tggttgcggc gtcgtgctac ctgccggatg tatctggcgg cgccggtgtc gtgttaacca
      541 acgacggtgt ggtcctgccc gggagcacgt tcggcgaatc gctcgtgttt tccggttcac
      601 acctctacac ctttacacac gacacgacgg agtatgggct gcgtaaactg gcagtgaaca
      661 gcaccaccgg actttcggaa gtcaattttg ttacgaatct cgtcaacggt tttggtcaaa
      721 gaatcgcggc cgcgggtgga cgtatctttg gcagcgacgg cgcggtggcc gatgcagatt
      781 cagtgacgct gacgggcaag ttcaagcgaa acgatccggg tgtttgggtc gcgcccgatc
      841 cggccaacaa tcgcgtttac tttctcggcc ttcacgattt tgtccaaact tctttggtgg
      901 tcacgtccta cgacgcgacg acgtatcttc aggtcggctc gttgacgctg caaaacatta
      961 tcggcgccga cgacgtgccg agaacattta ttcgctacgg tactgatggt cttgccttca
     1021 cgacgtccga aggcgagata gtcttcctga gtacgtcgat gcttgcgccg ctcagcgcaa
     1081 cgccggttcc gactccggtc caggtaacac ccgagatcaa gcagattccg ctcacgacgg
     1141 gcgggctcgt ttacaacagc gctgacggaa tgatctacgc gagtgtgccg agtcgcacgg
     1201 acgggtttgg taacccgatc acgttcggca acagcatcgt gccgatcaat ccggcaaccg
     1261 gaacattggg ccaaccggtc catgtgggca gtgagccgaa gagactgatc atcacgccga
     1321 acggccagca tatttatgcc gcgctcgacg gcgcgggatc cgtcgcccgt gtggacatgg
     1381 cgacgaaaac cgtcggcttg aggttctcgt tgggcaatga tgcgccgtcg agaggaccgc
     1441 gcttcgttga agacatgaac cttgcgccgg gcagtgtttc aacgctggcg atttcgcgca
     1501 tgcacaagaa tggaattccg cgtcacaccg gagtcgcgat ctacgacaac ggcgtgcagc
     1561 gtccgaacac gacttccgcc gagttcccca gccacttcga taacaacaac gcgatcgagt
     1621 attcgagttc gccgtctacg atctacggct acaacctcga aagcaacact cagcattttc
     1681 acaagctcac ggtcaatgcg tcgggcgtgc aagtcacgac cacggtgcaa aatcctttca
     1741 acgtgggcga cttcgtgttt gatagcgggc tgctttacgc aaacggcggt caaataatca
     1801 atccggaaac ggcaacgatc gtcggcagct acagcggtct gagtaacggc aaccactttg
     1861 tgattcccga gtcgtcgact gaccggattt acttcctcga cgacaatctt ttcggcacgg
     1921 tcacgatacg cgtctaccgg caaagtacgc gcgctttgat cggcacgatg acggttccga
     1981 acgttcgggg atttccgagc agtttcattc gctggggaac gaatggtctg gcgtttaaag
     2041 tgacttcaga catactggcg ctgagtagtc aggtctatct catcactttg ccgcccgcgt
     2101 tgacgccgcc tccagtgcag accgggccga tcgagctgtt gctggattct tccggtcccg
     2161 ccgccgatca ggtcgcgagt ctcgactcgg tgttgttagt gagagatccg ttccaggtga
     2221 tcaacccggc aaacctgtgg actccttcca acgacagaaa cacacgcgta gtggtctttg
     2281 cgcgcaacct tcagttggcg cagggcgaac ctgcgtcgtc cgtggtcgtg aacctcgtcg
     2341 acgcggcgag tcagaatcac gatgttccgg ccgaagacgt gcgcgccgtg ccgaacacgg
     2401 attttgttca agtgatcttc cgactgccga acaatctcgc ggtggggact tgcagcgtga
     2461 agataaaagc gcagacgagg accagcaaca ccggcacgat gcggatcaag agttagggcg
     2521 gcttctgcga caaacgtgtg ccttaccctt catccttgag caacttgcga atctcgtctc
     2581 gcaactcgtc gctgttctcg tgtccatggt aagacgccgc gtgtagcacc gcgagttcga
     2641 gaacttcatc ttcacttccc gatatcttca ccgaacaatt cttctcactc ggatactccc
     2701 ggcagtcaat gaacttgcgt ggttgttgcg ttggactcgc cgacatgctg atgtctcctt
     2761 tcgtcaacgg ctacgcgcgg acggcatagc ccttgtttga gtctttggtg tgtgtcgttg
     2821 ctacgaacca ttacgataca gaacgtacaa ggaagggaca aatgggcaga tctgaagaat
     2881 tcgatcgaga cggcgacgca gacgtcaaga aggtcgtcac caagacggcg ccgctcggat
     2941 atttaccgct gttgtacctg gcgatgtcgc tgatattcat tctcgccgta ctgtttttgt
     3001 ggtggcgagg ttaatttgta acaaccgcgg gcgaccatag cgcgagcggt gtgcgcgccg
     3061 tgcgattgtg tttcgcggcg gcacggttgt acgtcgacaa caacaatcgc tgatcgcaca
     3121 tacactcgat cagtttggcg cggccgtagg ttttttcgat aagtactgac attcgccagc
     3181 cgaccgtata ccacggaccc tgaacgccga agaacgagaa acccttttct cgaatctgat
     3241 cggcgttcag tttgttttcg agtatctcca cgaagaacgc atcgaccttc ttgagatcct
     3301 cgttgaagtt cgccacgtct ttgtcccagc gtgcgcgctc gtccgccttg ctcaccgcgt
     3361 gcggatgaac gtttggacca cccgcggccg caagcatcgc aaagccttcg ccaaacgcgc
     3421 cggtccaacc gatcactcgc tgcatcttcg gatcgagctt ctcgatctgg gccgacacgt
     3481 ctttgcgcgg gcaggtgctg ccgtaaccga tgtgatgcag ttcgtgcgcg agcgtgtttt
     3541 caaacttctc acggctcacg gccggatcga gatacagaaa gatcgcggga tcgtttttga
     3601 cgtcgaagac gaagctgttg tcgcgcggct tgatcacggg atagatcttc gcgcggatgc
     3661 tcgcgtcctt cggcaggtat gcgagcgcca gaccggcggc ccgtgtgaga tccgcctgcc
     3721 gccagcgggc aagtgtttcg gtcagctccg gcagcttcgc cgcgagttgg tccgacagca
     3781 cgaaggtttt gaaatccgtc tcttcaaacg ggcgcttcat cgacgtctcg cgctgcttga
     3841 gccgcgcgta tccttcactc tgaaacacgc gctgccaatc ggcttccgcg atcgtttcgc
     3901 cggccttctt cttcgtgaga atcgccagca ccgcctcggc ttcatcggtc accaactgca
     3961 cgttcaccgc cgcagccgcg ctggtttgcg ctaccagcac caataaaaaa caacagatga
     4021 gtcgcagttt catttgctta caaaaccccg cgcggtggtg ttttctaaca agaggcatca
     4081 cctatgcaac gcgtaatcct gctcgtaatc gttctcttta gtgtgcaaac tgcggccctc
     4141 ggccgatctc tgaacgcccg tgcagagatg cttttacgca gagagatgcg cgaacgcaga
     4201 attcccgggc tccaggccgc agtcgtaaaa aacggcaaga tcgttttgct gagcgcgttg
     4261 gggaccgccg acttgcaaag caccgcgcct gtttccaaca acagcgtctt cggaatctat
     4321 tcctgcacga aagcgtttac gggtgtcgcg atcatgcagt tggttgaaga cggaaaactc
     4381 gatctttccg cgcctgtctc acgctatctc gacggactcc cggacgcctg gcaaccggta
     4441 actatccgac aattgttgac gcacgtttcc ggtctgccaa acattcttcg tgctttggat
     4501 ccggtctcgt acggttaccc gagcggcgcc aacgaagaag ctgtgtgggc caaaacgaaa
     4561 gcaatgccga tggagttcac gccgggcgag cgtttcagct acaaccagac caactacgcg
     4621 ctgctcggca agatcatcga caaactcaac ggtaaaccat tcgctcaagt gtttcgcgaa
     4681 agacagtttg acgtcgccgc gatgtcgcac acgggcttcg gcgattcgcg cgacgtgatt
     4741 ccgaacatgg tccgcaccta tcgttacgtc aaccgatccg atggtgaaaa actgtccgcg
     4801 gaaaagctgg tccatgatta cgtggagttt ccgccgtttc gccgcaccgc gtccggcatg
     4861 aacagcactg ctgaagatct agcgcgttgg gtgactgctc ttcaacaaag caaactattg
     4921 cgcacgaagt ctgcattgaa gacgctttgg accgctggaa atgttaacaa cagctcggcg
     4981 ccacaatggg cgctcggttg ggttaccaaa ccacggccgc agcacagtgc cgttaccgcg
     5041 acgggcggcg gccggaccgc aatcttcgtc taccctgaag atgatctcgc agtgatcgtg
     5101 ttaaccaacc tcgcgggcag ttttcctgaa gagtttgtgg acgaactggc aggtatttac
     5161 aaccccgcga tcccggcctc cgatcctgtc accgcactgc gcatgcaact ccgcgaacgc
     5221 ggttacgaac acgcgatcgc cgtcttcaac gaactgaaac ggaagaaccc ggcctttcaa
     5281 cctctcgagc gcgacctgaa cgactgggcc tatcgcatgt tgaacggcgg tgggaaaccc
     5341 aaagaagctc tcgaaatctt caaactcaac gtccacctct accccgcaag ctcaaacgtc
     5401 tacgacagcg tcgccgaagc ctacgccgcc ctcggccacc tcaccctcgc catccaaaac
     5461 tacaaacgct ccctccaact cgaccccaag aacaccaacg cggtccaaca attaaagaaa
     5521 ctcgatccga gcttcaagta accgtcggtt taaaagtagc gtcggtttag ttgggacgcg
     5581 ctctgagttc gtgaagcagc ttgcgttcgt gaatgtacct tgcgttcgtg aatgcagctt
     5641 gagcttatgc ggaatacgcc gaaggcgttc gcgagtttca gcccaaggtt ggagcttgcg
     5701 acaaccttgg gtaaaccatc cacatttccg atcaaccctg aaagggtttc caaacgcggc
     5761 gaaccctttc agggttgact ccttcttttt aattcgaccc ccagggttct cgctaacagc
     5821 tcgaacccgt gggctgaaat tagcgaacgc cttcg
//
LOCUS       DASWTX010001069         3185 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_170093, whole genome shotgun sequence.
ACCESSION   DASWTX010001069 DASWTX010000000
VERSION     DASWTX010001069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3185
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170093"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1705
                     /locus_tag="VGD38_16285"
     CDS             <1..1705
                     /locus_tag="VGD38_16285"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0729641.1"
                     /translation="VPVPHEVLLPAQYAPAESNSNGSATFFLPGMSTGFGPQAAINNA
                     TTSQRQFNIIDTISLTTGAHQWKIGIDYRRLTPILSPRAYILALLFFTPAEITNATAS
                     IAAISAGVETRPIYHELSIFARDSWRVTPRLTLDFGLRWDVNPAPGEATGNDPLAIVN
                     ADSPSTLALAPRGTPLWQTTFNNFAPRFGVAYRMFDTPGREAVVRGGFGVFYDTGNSQ
                     GSAGFERYPFVPSITQPNVALPLSAAQVAPPPFTIAPRHGGITTSDPNLKLPYTLHWN
                     FAWEQSLGREHSLTTTYVGNAGRRLLVQRTLNLTAFNPNFSDLRLITNDASSDYHALQ
                     MQFQRRLSRGIQALVSYTWAKAIDVVSSDVVSNLLLRGPSDFDIRHNLTGAVTYDIPA
                     PKQNGLVNAILRRWSIDTRFNAQSALPLNIVSGIILDPSDGTQIARRANLIDGVPVYL
                     DNPNAPGGRVINRAAFAIPPPNRQGNLGRNIIRALPAWQIDMALRRQFNLTEKLNLQL
                     RAEAFNIFNHPNFGTINNSLTSTTFGQATNMLGSQLTGLNPLYQIGGPRSMQFALIVR
                     F"
     gene            1716..>3185
                     /locus_tag="VGD38_16290"
     CDS             1716..>3185
                     /locus_tag="VGD38_16290"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY0729642.1"
                     /translation="MTSKREPLVVCVVLLSLSHLIIPCAVNAKRSSAPPLAKLRKIDR
                     ERAIAAKLQNKKDVMLVVAAKPGMNAAVVQEATNFGAVIRFREDSVDYLRLRVPVDRI
                     YDVAGLSTVEIVAVDGVQLYKTSQDIPAGRSKETPPPDRNTPADNPFLPTADIGAPQF
                     IRDHPTFDGRGVTIANVDGNSPDTLAPELQTALSIDGTPIPKFSDVINALDPIDDESS
                     LRVEMSNEVEARNGSFEWKQITYRSPGEGKYRLGFFNIDAFGGGLLRPYLPQLSKVKN
                     SLPVLWQEQTNLVWVDTNLDQSFADETALTDFNSSYRAGVLSKDDPATPLRETVAFTI
                     LTNPQYKLIYLAPLANGHATATASVAAGHNFFGGRMNGVAPGARIASVLRKSVTHSFV
                     EAMILTIKNPKVDIVSLQWAAIMPPQDGNSVVGVIFRRLVETYNKPIFASANNTGPGL
                     STQGEQAVPDKVISVGGYVNKLTWRSNYGVSTTANDTLVN"
BASE COUNT          695 a          971 c          829 g          690 t
ORIGIN      
        1 ggtcccggtt ccgcacgagg tgctgctccc ggcgcaatat gccccggccg agagtaattc
       61 aaacggcagc gcgacattct tcctgcccgg gatgtcgaca ggttttggac cacaagccgc
      121 catcaacaat gccacgactt cgcagcgcca gttcaatatt atcgatacga tttcattaac
      181 gaccggcgcc catcaatgga agattggaat cgattaccgg cggcttacgc cgattctttc
      241 tccccgagcc tacatcctgg cgctgctctt ctttacgccc gcggagatca ccaatgccac
      301 ggcgtcgatc gctgcgatca gcgcgggtgt tgagacacgc ccgatctatc acgagctttc
      361 gatcttcgct cgggattcgt ggcgagtgac gccacgtctc acgctggact ttggcctgcg
      421 ttgggacgtg aaccccgcac ccggcgaagc caccggcaac gatccactcg cgatcgtaaa
      481 cgccgatagt ccctcgacgc tggcgctggc tcctcgcggc acaccgctct ggcagactac
      541 ttttaataac ttcgcgcctc gattcggtgt tgcttaccga atgtttgaca caccgggccg
      601 cgaggccgtg gtccgcggcg gctttggtgt tttctacgac accggaaatt cacagggttc
      661 agccgggttt gagcgctacc cgtttgtgcc aagtatcacg caaccgaatg tggcccttcc
      721 tctttccgcc gcccaggtgg ctccgccgcc gtttactatt gctccccgcc acggcggcat
      781 cactacttcc gatccgaatc tcaaactgcc ctatacgctg cattggaatt tcgcctggga
      841 gcaatcactc ggccgcgagc actcacttac gacaacatac gtcggcaacg ccgggcgcag
      901 gttgctggtc cagcgcacgc ttaacctcac cgcgttcaat ccaaactttt ccgacctgcg
      961 tctgattacc aacgatgcgt cctcggatta ccacgcgttg cagatgcaat ttcaacgccg
     1021 cctttcgcgc ggcattcaag ccctcgtttc ttacacctgg gccaaggcga tcgacgtggt
     1081 ctcttccgac gtcgtaagca acctcttgct gcgtggacct tccgatttcg acattcgcca
     1141 caatctgacc ggagctgtta cgtatgacat tccggctccg aaacaaaatg gcttggtgaa
     1201 tgcgattctg cgccggtggt ccatcgacac ccgcttcaat gcccaatcgg cgctgccttt
     1261 gaacatcgtt tcgggaatca ttctcgatcc atctgacggc acacagatcg cgcgccgcgc
     1321 aaacctgatt gacggtgttc cggtgtacct tgataacccg aacgcgcccg gcggacgcgt
     1381 gatcaaccgg gctgcatttg cgatccctcc gccaaaccgg caaggcaatt tgggccgcaa
     1441 catcatccgc gcgctaccgg cctggcagat cgatatggcg ttacgccgcc agttcaactt
     1501 aacggaaaaa ctcaatcttc agttacgagc cgaagcattc aacatcttca atcatccaaa
     1561 cttcggcacc atcaacaact cgttaaccag cacgacgttt ggtcaagcaa cgaacatgct
     1621 gggctcacaa ctcacgggcc tgaatccgct ctatcaaatc ggtggaccac gttccatgca
     1681 gtttgcactg atcgtgcggt tctaaggagc gcgccttgac gagcaaacgt gagcctctgg
     1741 ttgtgtgcgt ggtcctcctc agtttgtcgc acctgatcat tccatgtgcc gtgaacgcga
     1801 aacgcagttc ggcgccgccg ctcgctaagc tgcgcaagat cgatcgcgaa cgggcgattg
     1861 cggcaaagct gcagaacaag aaggacgtta tgctcgtcgt ggcggcgaag ccgggcatga
     1921 atgcggcagt cgtacaagaa gcaacgaatt tcggagcagt gatcaggttt cgtgaagatt
     1981 cagtcgatta tctccgcctc cgggttcccg tggatcgcat ctacgatgtt gcggggttga
     2041 gcacggtcga gattgtggcg gtcgacggcg tgcaactcta caaaacgtcg caggacatac
     2101 ccgccggacg ttcgaaagaa acgccaccgc cggacaggaa cacacctgcc gacaatcctt
     2161 ttcttccgac agcggacatt ggtgcgccac agttcattcg cgaccatccg actttcgatg
     2221 gacgcggtgt gacgattgcg aatgtcgatg gcaactcacc ggatacactc gcgcccgagc
     2281 tacaaaccgc gctttcgatc gacggcactc ccattcctaa attttcagac gtgatcaatg
     2341 cactcgatcc catcgacgat gagtcttcgt taagagtcga gatgtcgaat gaagttgagg
     2401 cacgtaacgg aagcttcgaa tggaagcaaa ttacttatcg aagcccgggt gagggaaagt
     2461 accggctcgg ctttttcaat atcgatgcgt ttggcggcgg tttgctgcgt ccctatcttc
     2521 cgcaactcag caaagtcaag aattctttgc ccgttctttg gcaggaacag accaatcttg
     2581 tgtgggtgga tacaaacctg gaccagagct tcgcggacga aacggcactc accgatttca
     2641 actcttccta tcgcgcgggt gttttgagca aagacgatcc cgcgactccc ttgcgtgaga
     2701 cggtcgcctt tacgatcctg acgaaccctc aatacaaact catctatctc gcgccactcg
     2761 caaacggcca cgcgacagcc accgcgagcg tcgcggcagg tcataatttc ttcggcggaa
     2821 ggatgaacgg cgttgcgccc ggagcccgca tcgcttcggt gcttagaaaa tcagtgacac
     2881 actcattcgt cgaagcgatg attctcacca tcaagaatcc aaaggtcgat atcgttagtt
     2941 tgcaatgggc cgccatcatg ccgccgcagg acggcaactc ggtagtcggc gtgatctttc
     3001 ggcgcctggt tgagacatac aacaagccga tctttgccag tgcaaataat accggaccag
     3061 gactgagcac gcagggtgaa caggccgtgc ccgacaaggt gatcagtgtc ggcggctacg
     3121 ttaataaact cacgtggcga tcaaactacg gcgtgtccac gacggcgaac gatacactcg
     3181 tcaac
//
LOCUS       DASWTX010001070         2933 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_388438, whole genome shotgun sequence.
ACCESSION   DASWTX010001070 DASWTX010000000
VERSION     DASWTX010001070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2933
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_388438"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1260
                     /locus_tag="VGD38_16295"
     CDS             <1..1260
                     /locus_tag="VGD38_16295"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY0729643.1"
                     /translation="LPNVPKITAVLTFRSATTASDREAHPGIAQIAASVANEGTDTRT
                     SKQIKEELRSIGGTLSLFSDADSTTMNATSLSEFSPRLFDLMSDVAQHPSFPETEVKL
                     AQENTIQQIRAGRADPGFLVNERFQKAVFGNHPYGFVVPDEKSISSLTRADLRSFVAK
                     YYLPNASHLIVVGDIDVNKTYAEIEKAFGSWKSGTVPPEQNPDVPKRDKRQIYFVNRP
                     GSIQSAIYIGNVSIPRKDKDYFAIRTANTIYGGSFYSRLTRNIRETKGYTYSPFSSAN
                     TQAKTGSFLAGAFVRNEVTGPTLLEIFYELDRMRVMPVTDEELSAAKEYSTGNFSVEL
                     ASQQGLAGRIATIYTYDLDKNFINDFRPKIEALTTADIQKAAAKYFDTYRAAIVIVGD
                     WDKVKDQVMPFGEVTIYDSEGNVVTKS"
     gene            1280..1753
                     /locus_tag="VGD38_16300"
     CDS             1280..1753
                     /locus_tag="VGD38_16300"
                     /inference="COORDINATES: protein motif:HMM:NF013923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEY0729644.1"
                     /translation="MIDLKVNGKQVTADVDPGTPLLWVLRDALGLTGTKYGCGMAQCG
                     ACTVHLNGEAIRSCVKRVSDAVGKEITTIEGLSTDLSHPLQKAWIEIDVPQCGYCQSG
                     QIMSAAVLLAEKAKPTDTDIDEAMSGNICRCGTYPRIRRAIHRAAELKANGRSGE"
     gene            1750..>2933
                     /locus_tag="VGD38_16305"
     CDS             1750..>2933
                     /locus_tag="VGD38_16305"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY0729645.1"
                     /translation="MRRRDFLKIGAAAGGGLLIGMHLPALARVEEASSLAAPFAPNAF
                     VRVGTDDIITVIVNKSEMGQGIYTSLPMLVAEEIEADWSKVRFEAAPVDPAYNHPVFG
                     IQMTGGSTSTPSEWERFRKAGAAARIMLIAAAARQWNVDAQSLKAEKGFVVHAASNRR
                     ASFGSLAEAAATIEPPKDVPLKDPKDWKLIGKSTRRLDTPAKVNGSAEFGIDVKVPGM
                     FTAVVARAPVFGGKVVSFNADQARRVPGVKDVVQVPSGVAVIANGFWPAKLGRDKLEI
                     KWDHGANANLSTTAMRAEFAKLAQTPGVVAKKAGDPAKVLPGAAKTITAEFEVPYLAH
                     ATMEPLNCVVDLRADSCEIWTGTQFHTGDAAAAAAIAGLKPTPVKIHTTLLGGGFGRR
                     ANP"
BASE COUNT          648 a          875 c          876 g          534 t
ORIGIN      
        1 ttgccaaacg tgccgaaaat caccgcggtg ctaacgttcc gctctgccac cacggccagc
       61 gatcgcgaag cacatccggg catcgcgcag atcgcagcgt cggtggcgaa cgaaggcact
      121 gacacgcgca ccagcaaaca gatcaaagaa gagttgcgtt cgatcggcgg cacgctttcg
      181 ctctttagcg atgccgattc gacgacgatg aacgccactt cgctttccga attttcaccg
      241 cggttgttcg acttgatgtc cgatgtggcc cagcatccgt cgtttcccga aaccgaagtg
      301 aagctggccc aggagaacac gattcagcag attcgcgccg gccgcgccga tcctggtttt
      361 ctcgtcaacg aacgttttca gaaagccgtc ttcggcaatc acccgtacgg ttttgtcgtg
      421 ccggatgaga agtcgatcag ttcgttgacg cgcgccgatc tgcgttcgtt cgtggcgaag
      481 tattacctgc cgaacgcttc gcacctgatc gttgtcggcg atatcgacgt caacaagacg
      541 tacgccgaga tcgaaaaggc gttcggaagt tggaagagcg gcacggtgcc gcccgaacaa
      601 aacccggacg ttccgaagcg cgacaaacga cagatttact tcgtgaaccg ccccggctcg
      661 atccagtcgg cgatttacat tggcaacgtg agtattccgc gcaaggacaa agactacttc
      721 gcgattcgca cagccaacac gatctacggc ggttcgttct attcacgttt gacgcgtaac
      781 atccgcgaga cgaagggcta cacctattcg cctttcagtt ctgcaaacac gcaggcgaag
      841 accggatcgt ttctcgccgg cgcgttcgtg cgcaacgaag tgactggccc aacactgctc
      901 gagatctttt acgagctcga tcgcatgcgt gtgatgccgg tgaccgatga agaactgagc
      961 gcggcgaagg agtacagcac cggaaacttc tcggtcgaac tcgcgagcca gcaaggtctc
     1021 gccggacgca tcgcgacgat ctacacctac gacctcgaca aaaacttcat caacgacttc
     1081 cgcccgaaga tcgaagcact cacgacggct gacattcaga aggccgccgc gaaatacttc
     1141 gacacctatc gcgcggcgat cgtgatcgtc ggcgactggg acaaagtgaa ggaccaggtc
     1201 atgccgtttg gtgaagtgac gatctacgac tcggaaggaa atgttgtaac aaagtcgtaa
     1261 atctgtgtaa tctgtggcca tgatcgattt aaaagttaac ggcaagcagg ttactgctga
     1321 tgtcgatccc gggacgcctc tgctttgggt cctgcgcgac gcgctcggac tcaccggaac
     1381 gaagtacggc tgcggcatgg cccagtgcgg cgcgtgcacg gtccatctga acggcgaagc
     1441 gatccggtcg tgcgtcaagc gcgtctcgga cgcagtcggc aaagagatca ccaccatcga
     1501 aggcctctca acggacctga gtcatccatt acagaaggcg tggatcgaga tcgacgtgcc
     1561 gcagtgtggc tactgccagt cgggacagat catgagcgcc gctgtgctgc tcgccgagaa
     1621 ggcgaagccg acagacacgg acattgacga agcgatgtcg ggcaacatct gtcgctgcgg
     1681 aacgtatccg cgcatccgcc gcgcgattca ccgcgccgcg gagctcaagg cgaacggaag
     1741 gagtggagaa tgaggcgccg cgattttctg aagattggcg ctgccgcggg tggcggtttg
     1801 ttaatcggga tgcacctgcc tgcgttggct cgcgtcgaag aagcgtcgag cctagcggcg
     1861 cctttcgcgc cgaacgcgtt cgtgcgcgtc ggcactgacg acatcattac cgtgatcgtg
     1921 aacaagtcag agatgggcca gggcatttac acgtcgctgc cgatgctcgt cgcagaggag
     1981 atcgaagctg actggtccaa ggtgcgtttc gaagcggcgc ctgtcgatcc ggcttacaac
     2041 catccggtgt tcggtattca gatgacgggc ggcagcacga gcacgccgtc cgagtgggaa
     2101 cgctttcgca aagccggagc cgccgcgcgc atcatgctga tcgccgctgc tgcgcgacaa
     2161 tggaatgtag acgcacaaag tctgaaagct gaaaagggat tcgtggttca cgcggccagc
     2221 aaccggcgcg cgtcctttgg ctcgctcgcc gaagccgcag ccacaatcga accgcccaaa
     2281 gacgttccac tcaaggatcc aaaagactgg aaactgatcg gcaaatcaac acgccgtctc
     2341 gacacgcccg cgaaggttaa tggttcagca gagttcggca tcgacgtgaa ggtgcccggc
     2401 atgttcacgg cagtcgtcgc gcgcgcgccg gtgtttggcg gcaaggtcgt cagctttaac
     2461 gcagaccaag cgcgccgcgt gcccggcgtc aaagatgtgg tccaggtgcc ttccggtgtt
     2521 gccgtgatcg caaacggttt ctggccggca aaactcggcc gcgacaaact cgagatcaag
     2581 tgggaccacg gcgcaaacgc gaatctctcg acgacggcca tgcgcgcaga gtttgcgaag
     2641 ctcgcgcaaa caccgggagt cgtcgcgaag aaggccggcg acccggcaaa ggttctcccc
     2701 ggggcagcta aaacaatcac cgcggaattc gaagtgccgt acctggccca cgcgacgatg
     2761 gaaccgctca actgcgtggt cgatctgcgc gccgactcgt gcgagatctg gaccggcacg
     2821 cagttccaca ccggcgacgc cgcggccgct gctgccatcg ccggtttgaa accgaccccg
     2881 gtcaagattc atacgacgct actcggcggc ggctttggac gccgcgcgaa tcc
//
LOCUS       DASWTX010001071         2196 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_299272, whole genome shotgun sequence.
ACCESSION   DASWTX010001071 DASWTX010000000
VERSION     DASWTX010001071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2196
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299272"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            202..747
                     /locus_tag="VGD38_16310"
     CDS             202..747
                     /locus_tag="VGD38_16310"
                     /inference="COORDINATES: protein motif:HMM:NF016836.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HEY0729646.1"
                     /translation="MYQKLARLFVLVVFAGILVTAHDAMGQSNARVVREVRHELVTLP
                     YYGVFDWLEYEVQNNGTVVLRGQVVRPTTKSDAEGRVKEIDGVTGVVNQIEVLPLSPS
                     DDRARRALYRAIYDFNSPLFRYATQSVPPIHLIVKRGHATLKGVVASRSDAQIAYTRA
                     RGVPGLFSVRNELIVEGEQPR"
     gene            complement(764..1180)
                     /locus_tag="VGD38_16315"
     CDS             complement(764..1180)
                     /locus_tag="VGD38_16315"
                     /inference="COORDINATES: protein motif:HMM:NF015048.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hotdog domain-containing protein"
                     /protein_id="HEY0729647.1"
                     /translation="MPELEIGATATAELVVGPQDLASSISNEHGDAFPAVLATARMIA
                     LMETAAARVMQPLLGAGELSVGVTVDITHIAPTPPGVLVVAHARYLGREGILFVFEIT
                     AQDEGGEIGRGSHKRAIVETERLQRTAAKRNARAEG"
     gene            1215..>2196
                     /locus_tag="VGD38_16320"
     CDS             1215..>2196
                     /locus_tag="VGD38_16320"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY0729648.1"
                     /translation="MQSAKRYDVAVIGAGVFGVWTAYQLNRAGASVLLLDGYGPGNSR
                     ASSGGESRIMRLGYGPDEIYTRSAQRSLKVWEEFFAQCDSATPLFHRTGVLWLAREED
                     AYCEATLKNLLAVGARAERLYRDELSARFPQMKFDGVDWAVHEVDAGVIMARRAVQAV
                     ALKARANGVEYLEEAVAPPIDTQNLRTISGKQIAAEHLIFACGPWLPKLFPDLLGERI
                     HVTRQEVFFLGVPPGSDLFKSPQLPTWVDFNDLVYGMPALDGRGAKLAIDAHGPEFDP
                     DRGDRIVSAESARAVREYLARRLPRLADAPVTETRVCQYENTSNGDFLIDR"
BASE COUNT          446 a          630 c          686 g          434 t
ORIGIN      
        1 acgtaaacgc cgagcagccg gcgagcgcga ccgatcctcc gatcggccag taaaaacgcc
       61 aggtgtctga aataaagacg ccagcggcca tgcaggtcgc tggcgtttcc gttttcgcaa
      121 accgctttaa caaaatcggc aggaaatacc aacagacacg acaacctttt taactacagc
      181 taaagcgttg gaggttgtgc tatgtaccaa aaattggcca gattgtttgt tctggtcgtc
      241 ttcgcaggaa ttctcgttac ggcccacgac gcgatgggcc agtccaatgc gcgcgtcgtg
      301 cgcgaagtca gacacgagct cgtgacactg ccctactacg gcgtgttcga ctggctcgaa
      361 tatgaagtgc aaaacaatgg gaccgtggtc ctgcgcggac aggtcgtgcg gccgacgacg
      421 aaatcggacg cggaaggacg cgtgaaagag atcgacggcg tgaccggagt ggtgaaccag
      481 atcgaggtgt tgccgctttc gccgtcggac gatcgcgcgc ggcgcgcgtt gtatcgcgcg
      541 atctatgact tcaactcgcc gctgtttcgc tacgcgacgc agtcagtgcc gccgattcat
      601 ctgatcgtga aacgcgggca cgcgacgttg aaaggcgtcg tcgcgagtag aagcgacgcg
      661 cagatagctt acacacgcgc gcgcggcgtg ccgggtttgt tcagcgtcag gaacgagttg
      721 attgtcgaag gcgaacagcc gcgttaacgg tttgggttag ttgttaacct tcagcgcgcg
      781 cgttgcgttt cgcggccgtg cgctggaggc gttcggtttc cacgatggcc cgcttgtgcg
      841 acccgcggcc gatctctcca ccctcatcct gagcagtgat ctcgaagaca aacaatattc
      901 cttctcggcc aagataacgc gcatgcgcga caactaaaac accgggcggt gttggtgcga
      961 tgtgagtgat gtcgacggtc acgcccaccg acaactcacc ggcgccaagt agcggttgca
     1021 tcacgcgcgc ggcagcggtc tccatcagcg cgatcattcg cgcggttgcg agcaccgcgg
     1081 gaaatgcgtc gccgtgttcg ttggaaatag aactggcgag atcttgtggg ccaactacga
     1141 gttcggcggt ggcggtagcg ccaatttcca attcaggcat gttggcgtca aagattaccg
     1201 ggtacaatcc gcgcatgcaa tcggcaaaga gatacgacgt cgcggtgatc ggcgcgggcg
     1261 tgtttggcgt ttggaccgcg tatcaactga acagggcagg cgcgtcggtg ttgttgctcg
     1321 acgggtatgg accgggaaac agccgcgcga gttccggcgg tgagtcgcgc atcatgcgtt
     1381 tgggttacgg gccggacgag atttacacgc ggtcggcgca gcgatccttg aaagtgtggg
     1441 aagaattctt tgcccagtgt gacagtgcaa caccgctgtt tcaccgaacc ggcgtgcttt
     1501 ggcttgcgcg cgaggaggat gcttattgcg aagccacgct caagaacttg ctggcggtcg
     1561 gcgcgagagc tgaacggctc taccgggacg agcttagcgc gcgctttccg cagatgaagt
     1621 ttgacggcgt cgactgggcg gttcacgaag tcgatgcggg cgtgataatg gcgcgtcgcg
     1681 cagtgcaggc agtggcgctg aaggcgcgtg caaacggcgt tgagtacctc gaagaagccg
     1741 ttgcccctcc gatcgacacg caaaacctgc gaactatctc aggcaaacag atcgccgccg
     1801 aacatctcat ctttgcctgt ggtccgtggc tgccgaaact ctttcccgat ctgctcggcg
     1861 aacgaattca cgtcacgcga caggaagtct tctttctcgg cgtgccgccc ggaagcgatc
     1921 tcttcaagtc gccacaacta ccgacgtggg tcgacttcaa cgacctcgtt tacgggatgc
     1981 ccgcgctcga cggccgcggc gcgaagctcg cgatcgacgc gcatggtcca gagttcgatc
     2041 ccgatcgcgg cgaccgcatc gtctccgccg agtcagcacg agcggttcgt gaatatctcg
     2101 cccgccgcct gcccaggctc gcggatgcgc ccgttacgga aacacgcgtt tgccagtacg
     2161 agaacacttc gaacggcgac ttcctgatcg atcgtc
//
LOCUS       DASWTX010001072         2223 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_208126, whole genome shotgun sequence.
ACCESSION   DASWTX010001072 DASWTX010000000
VERSION     DASWTX010001072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208126"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(615..>2223)
                     /locus_tag="VGD38_16325"
     CDS             complement(615..>2223)
                     /locus_tag="VGD38_16325"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY0729649.1"
                     /translation="PRVDGGFKPDLVAPAATLGANFGIAEYLLPPPFQLPPGYSSGAG
                     TSYSCPMVAGAAALLISAAKQSGVPYDAQKIAWALKSSARYLPGIPAHEQGNGLVNVA
                     AAWEALKRAPAHVALSSSVRINVAIGPYLKTPNHGPGIFEREGWQAGQSGQRAIVFTR
                     TSGRPEPTDYVVRWTGNNGSFSSASKVRLPLNKPIPFRVTINPKTSGVHSAILNLDDT
                     TRGARSVYQVMNTVIAAEQFRASENFTVTREGTAEYPGYTSYFFNVPANASAVKVDVK
                     INQGTIKLRFMRPTGKEFDSPHDTPVRWPPEYHTSGSFDRIIADPEPGVWQVIVENES
                     LRVPGDSETRRARFHITATLYGVESRAQAGLPTTSLGSAFSTRTIMASGSAPVIYDID
                     VPPGADTLRARIDGPLAKAADVDLYLYLCAKECELKAFSARSAAEERVAIAQPASGKW
                     KVVIDPVSIPSGAMALDYIDLFTHVAFGSLTLPVNGRRLVGLVELMTREPAIIRYEFN
                     ASTKTVEPVKERVTLAETLVDVLRVVN"
BASE COUNT          481 a          618 c          638 g          486 t
ORIGIN      
        1 cgagtcaacg ccccgcgata attatcttga tgggcgagct taagtacgta gtacaagcca
       61 gataactcaa taccaagcgc aacgagacga accacccaat tcatatatcc tcccctcacg
      121 gctgttgcgg tgtgcctgcc aatgtgacca gatcaagcaa aatggtttcg gatgtgtagg
      181 gctggcgaga ggttcttagg gagagttttc gcctaaaaag ggtgtcaacg tgactggcat
      241 atctgttgca ctcattcccc acgccggctg atcaaattgg ccgagacaac ttaaggttgt
      301 ttaacggggc gggtatcggc agtcgcaaac tcgtacgata cccgtccacg ttgtgcacaa
      361 acgtcataca cctgtatttc ccgcaaatac cgtgccttca cttcgggagt gagatttcgc
      421 ggagagctta gtagaagtaa caattttgga gggttttcga ccacacggca gttaagaact
      481 gtaaagatcg gtcaaaaacg tactattctt tagcgcatcg tgttcgatac gcacgctctg
      541 tggcggaaac gaacagtaag tcaaaacgca agacattcac gggcgagtgg ggcggcgtca
      601 gtcaacgggt ccggttagtt gactacgcgg agaacatcga caagtgtttc cgccaatgta
      661 acgcgctctt ttaccggctc aactgttttg gttgaggcgt tgaattcata ccttatgatc
      721 gccggctccc gagtcattag ttccacaagc ccaaccaggc ggcggccatt cacaggcagg
      781 gtcaaagaac cgaatgctac gtgcgtgaag agatcgatgt aatccagggc catggcgccg
      841 gaaggaattg aaaccggatc gatcactact ttccatttcc cacttgctgg ttgcgcaatc
      901 gcgactcgtt cctcggcggc gctgcgagcg ctgaacgcct tcagctcaca ctcttttgca
      961 cagagatata aatacagatc gacgtccgcg gctttggcta gcgggccatc gatacgtgct
     1021 cttaatgtgt cggcgcccgg cggaacatcg atgtcgtaga tcacgggtgc acttccgctc
     1081 gccatgatcg tgcgtgttga gaacgcactg cccaaagacg ttgttgggag accggcctgt
     1141 gccctggact cgactccgta gagtgtcgca gtgatatgaa acctcgcccg ccgcgtctct
     1201 gaatcgccgg gaacgcgcag gctctcattc tcgacgatca cctgccaaac acccggctcc
     1261 ggatcggcaa tgattcgatc gaagcttccg ctcgtgtggt attcaggcgg ccagcgaaca
     1321 ggtgtgtcgt gagggctatc gaattccttc cccgtgggac gcatgaaccg caatttgatg
     1381 gtgccttggt tgatcttcac gtcgaccttc actgcggacg cgttcgctgg gacgttgaag
     1441 aagtatgacg tgtagccggg atactccgcc gtaccttcgc gcgtgacggt gaagttctca
     1501 ctcgcgcgga attgctcagc cgcgatcacg gtattcatga cctgatagac ggaacgcgca
     1561 cccctcgtag tgtcgtcgag gttgaggatc gcgctgtgca caccggaagt cttcggattg
     1621 atcgtgacgc gaaagggtat cggcttgttc agcggaagcc gtacctttga tgcactgcta
     1681 aaactcccgt tgttgccggt ccaacgcacg acatagtcgg tgggttcggg acggcctgaa
     1741 gtacgagtga acacgatggc ccgttgacca gactggccgg cttgccagcc ttcgcgctcg
     1801 aaaatgccgg ggccatggtt cggcgttttg agataaggac cgatagcgac gttgatcctg
     1861 acggaactcg agagcgccac gtgcgcgggc gcgcgtttaa gagcttccca tgctgccgca
     1921 acgtttacca gtccgttgcc ttgctcgtgc gcggggatgc ccggcaggta gcgcgcgctc
     1981 gacttcaagg cccacgcgat tttctgcgcg tcgtacggga caccactttg ctttgcggcg
     2041 ctgatcagca acgccgctgc acccgcaacc attggacacg agtacgacgt gcccgcaccg
     2101 gaactgtatc cgggcggcaa ctgaaacgga ggcggcagta gatactcagc gattccgaag
     2161 ttcgccccga gggtcgcggc cggagctacc agatccggct tgaatccgcc gtcgacgcgt
     2221 gga
//
LOCUS       DASWTX010001073         4929 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_143105, whole genome shotgun sequence.
ACCESSION   DASWTX010001073 DASWTX010000000
VERSION     DASWTX010001073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4929)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4929)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4929
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143105"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            260..469
                     /locus_tag="VGD38_16330"
     CDS             260..469
                     /locus_tag="VGD38_16330"
                     /inference="COORDINATES: protein motif:HMM:NF016167.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF433 domain-containing protein"
                     /protein_id="HEY0729650.1"
                     /translation="MKAEELIERNPEKMGGVAVFTGTRVPVEFLFQFLEDDQTLETFL
                     DQFPSVSRAQARSVLGASRDLLLGS"
     gene            501..1460
                     /locus_tag="VGD38_16335"
     CDS             501..1460
                     /locus_tag="VGD38_16335"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine dehydratase"
                     /protein_id="HEY0729651.1"
                     /translation="MQAPTYADILAAREFISAYLPKTPLVRSHKLSEALGCDYYLKLE
                     NLQPVGAFKVRGGVNLVGHAAREGRNETIVTASTGNHGQSIGYAGRLFNTRVIVYAPA
                     ENVNQAKLQAMRELGAEVRLHGRDFDEARLETERVANAEGFRYVHSADEPLLISGVGT
                     IGLEIFEDLPDVEVIIAPAGGGSCASGNCIVARERNPNVKVIAVQSEAAPAMWHAWRN
                     RNLDPYPTMKTVHEGLATRVPFELPSQILWQLLCDFVLVSDEQINDAVRILARDAKQL
                     VEGAGAASLAAAYKLRDQLSGKKVVGVVSGGNLPLTRFAQLLA"
     gene            1614..2723
                     /locus_tag="VGD38_16340"
     CDS             1614..2723
                     /locus_tag="VGD38_16340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729652.1"
                     /translation="MARSRSWLIALAVFAFLVSGSLVAPGLADNGPNHRVRNQRFGVS
                     GGNVNDATRRFCCSGTLGALVTDGTNQYILSNNHVLARGDQAVAGEDVSQPGLIDSNC
                     NIATVVADFTIASPLNSNVDAAIAQLRPGTMDSSGFIEDIGVPSSTVVAPSVGMSVAK
                     SGRTTGFTTGTIGSINTSVNVQYTASCGGGKKFTVPFTGQVVINSSTFSAGGDSGSLI
                     VTNNSAHNPVALLFAGSSSATIGNPATLVLTRLSAVLGRSLSFVGSGGGNSPTSQNGK
                     SEKEPFVRGFGGAMAQLPWQASDRASAVLETHRANLMATPGVIGAGVGATSENDSEPA
                     IVVYVDRTSGNRPVFAPSLDGVAVRVVHTDPFVAF"
     gene            2838..3911
                     /locus_tag="VGD38_16345"
     CDS             2838..3911
                     /locus_tag="VGD38_16345"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF006078.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HEY0729653.1"
                     /translation="MELPVNPTILPMLAKRVSELPRGGEWIFEPKWDGFRALVFRDGD
                     EVMIQSRDEKPLNRYFPELVETLKVQLPKRCVLDGEVVVAKDGALDFDALQLRIHPAE
                     SRIKLLSQQIPASIVFFDLLSDGRRDLRDQRFDKRRERLESLLASVRPPVHVTPVTTD
                     FEMASDWFRRFEGAGLDGVVAKPIAGTYEPNKRVMLKVKHERDCDCVVAGFRWHKKGE
                     RTRIGSLLLGLFDEKGFLHHVGVCASFKDEKRIELVEFLKPYRKDALDEHPWKAWAMG
                     EMDGGRRIPGAQSRWSAGKDLSWEPLRPELVAEVAYEHMQGDRFRHTAQFRRWRTDKK
                     PVDCTYEQLEVVPPYEIKQIFGG"
     gene            complement(3889..>4929)
                     /locus_tag="VGD38_16350"
     CDS             complement(3889..>4929)
                     /locus_tag="VGD38_16350"
                     /inference="COORDINATES: protein motif:HMM:NF045432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase small subunit domain-containing
                     protein"
                     /protein_id="HEY0729654.1"
                     /translation="EIVVDDAAGLAWIVNLGCIELHPHPVRSGDLDHPDELRVDLDPG
                     PGVGWDDVRRVAMEVKALLEEMKLRGWPKTSGSRGMHVNVRIEQRWTFSEVRRAAVAL
                     SREIERRVPKLATSKWWKEERHGVFLDYNQNAKDRTTCSAYSVRPLPDARVSMPLRWE
                     EVETCDPADFNVLTAPPRLAELGDAHAEMDLKAGSLDQLLELAARDEAAGLGDAPWPP
                     HFQKMEGEAPRVAPSRARSASGTSKRTAAKKKPARTRMPLLVIANSPSQEAALAGLDR
                     WKRKHRKVVKYLAADDVLVDKMRGRSSTWTRIRVNLRNIPEDLRPSQEAPDPDDDPTR
                     EWREATSRRKSV"
BASE COUNT          982 a         1436 c         1476 g         1035 t
ORIGIN      
        1 actcccagat gggagtagta tcactgcgct ttcgattgtc gccggattca taaacctgtc
       61 atgaacgacg gcgacgctca tcactcgtca gtgtgggagc ttgagctgcg cattgagcgg
      121 cttgattgtc aaaggcgagt gcaatcgtaa agcgtcagga gaaaatcgta aatagaaatt
      181 tgagttttgg gcgcctggcg cgagccaggt ggagtccgca gaggcgcgcg acccctgctt
      241 ctgcggactc gggggtccca tgaaggccga agaacttatc gaacgaaatc ccgaaaagat
      301 gggtggagtg gccgtgttca cggggacgcg tgtgccggtc gagtttctgt ttcagtttct
      361 ggaagacgat cagacgctgg aaacgttcct ggaccagttt ccgagtgtca gccgcgctca
      421 ggcccgcagc gtactcggag cttcgcgcga cctgctgctg ggttcgtaat gaagcctgaa
      481 actgtggtag cttgctccgt atgcaggcac cgacttacgc cgacatctta gcagcgcgcg
      541 aattcatctc ggcttactta cccaagacgc cgctcgttcg cagtcacaag ctctccgaag
      601 cactcggctg cgactactat ctcaagttgg agaacctgca accggtcggc gcgttcaagg
      661 tccgcggcgg cgtaaatctg gtgggccatg ccgcccgcga aggccgtaac gaaacaatcg
      721 ttactgcttc aaccggcaac cacggccagt cgatcggcta cgccggacgg ctcttcaaca
      781 cgcgcgtcat cgtctacgcg cccgccgaaa acgtaaacca ggcaaaacta caggccatgc
      841 gcgaactcgg cgcggaagtc cgtcttcacg gacgcgactt cgacgaagcc cgcctcgaaa
      901 cggagcgcgt cgccaacgcc gaaggtttca ggtacgttca ctccgccgac gaaccgctcc
      961 tgatctcagg cgtgggcacg atcggtttgg agatcttcga agacctgccg gacgtagagg
     1021 tgattatcgc tcccgccggc ggtggaagtt gcgcgtccgg caactgcatc gtcgcccgcg
     1081 agcggaaccc gaacgtgaaa gtgattgcgg tccagtctga agccgcgccc gcgatgtggc
     1141 acgcgtggcg caatcgcaat ctcgatccct atccgacgat gaaaaccgtg cacgaaggcc
     1201 tcgccacgcg cgtcccgttc gagctcccca gccaaatcct ctggcaactg ctctgcgact
     1261 ttgttctcgt ttccgacgaa cagatcaacg acgcggttcg catactcgcg cgcgacgcaa
     1321 agcagttggt cgaaggcgca ggcgccgctt cactcgccgc cgcatataaa ttgcgcgatc
     1381 agttgagcgg caaaaaggtc gtcggtgtcg tgagcggcgg gaacctgccg ttgacccgtt
     1441 tcgcccaact actagcgtag ttcgtacaaa actttaccaa ctattcattg acttaccccg
     1501 aaatggggcg taaaagtacg ctcacagtca ctaacgacag aactccccgc ccatctgcgg
     1561 cgcctccgtt agctggcgat accttcaacc atagattaaa aaggagaacc gagatggcta
     1621 gatcccgtag ctggttaatc gctcttgcag tgttcgcttt cctggttagt ggctcgctcg
     1681 tggcgccggg cctcgccgac aatgggccaa atcatcgagt ccgaaatcaa cgtttcggag
     1741 tttctggcgg caacgtcaac gacgcgaccc gcaggttctg ttgcagcggc actctcggag
     1801 cgctcgtcac cgacggaacc aaccaataca ttctcagcaa caatcacgtg ctcgcacgcg
     1861 gcgatcaggc tgtcgccggt gaggacgttt cgcagcccgg attgatcgac agcaactgca
     1921 acatcgccac tgtcgttgct gacttcacga tcgcttcgcc gctcaactcg aacgtcgacg
     1981 cggccattgc gcaactccgt ccgggaacga tggactcttc cggtttcatt gaagacatcg
     2041 gcgtgccgag cagcacggtg gttgctccca gtgtcgggat gtcggttgca aagagtggac
     2101 gtacgaccgg ctttactacc ggaacgatcg gctcgatcaa cacgagcgtc aacgtgcagt
     2161 acacggcgag ctgtggcggc ggtaagaagt tcaccgttcc ttttacgggc caggttgtaa
     2221 taaacagcag cacgtttagc gccggtggcg attccggatc gctcatcgtg accaacaact
     2281 cagcgcacaa tccggtcgcc ttgttgtttg ccggcagcag cagcgcaacg atcggcaatc
     2341 cagccactct ggttttgacg agattgagcg cggttctggg aaggagcttg agtttcgtcg
     2401 gcagtggcgg cggcaacagc cctacgtctc aaaacggaaa gtccgaaaag gaaccattcg
     2461 ttcgtggttt tggaggagcc atggcgcaac taccctggca agcttcggat cgtgcttcag
     2521 cggtgctcga aacgcatcgt gctaatttga tggccacgcc gggcgtgatt ggcgccggtg
     2581 ttggtgcgac atcagagaac gatagcgaac ccgcgatcgt ggtttacgtc gaccgcacgt
     2641 ccggcaaccg gccggtgttt gcgccgtcgt tggacggcgt tgcagtgcgc gtggtccaca
     2701 ccgatccgtt cgttgctttc taactttgct ttccacctgc tggggctagc gtgttcgtta
     2761 gccccagcgt cttgaccctc acgtttcgcg gcatttgcag tttgggatga agcgcttttc
     2821 ggcataagat tcggggcatg gaacttcctg tgaatccgac gattttgccg atgctggcga
     2881 agcgtgtctc ggaattgccg cgcggcggcg agtggatttt tgagccgaag tgggatggat
     2941 ttcgtgcgct cgtttttcgc gacggtgatg aggtgatgat tcagagccgt gatgagaagc
     3001 cgctcaaccg ttactttccg gagttggttg agactttgaa agtgcaactg ccgaagcgtt
     3061 gcgtgctgga tggtgaggtc gtggttgcga aggacggcgc gctcgatttc gacgcgttgc
     3121 agcttcgcat tcatcccgct gagtcgcgca tcaaactgct ttcccaacag atacccgctt
     3181 cgatcgtgtt ttttgatctg ctgtcggatg ggcggagaga tctgcgcgat cagcgttttg
     3241 ataaacggcg ggaacgcttg gagtcgctgc ttgcctctgt tcggccgccg gtgcatgtga
     3301 cgcctgtgac gacagatttt gagatggcct cggattggtt ccgacgtttt gaaggcgccg
     3361 gattagatgg cgtggtggcg aagccgatcg cgggcacgta cgaaccgaac aagcgcgtga
     3421 tgctgaaggt gaagcacgag cgcgattgtg attgtgtggt ggcggggttt cgttggcaca
     3481 agaagggcga gcgcacgcgg atcgggtcgc tgttgttggg tttgtttgac gagaagggat
     3541 ttctgcatca cgtcggtgtg tgtgcgagtt tcaaggatga gaagcggatt gagctggttg
     3601 agtttttgaa gccgtatcgg aaggatgctt tggatgagca tccgtggaag gcgtgggcca
     3661 tgggtgagat ggatggcggc cgccggattc ccggcgcgca gagccgttgg agcgcgggga
     3721 aggatctgtc gtgggaacct ttacgaccgg aactggttgc tgaagtagct tacgaacaca
     3781 tgcaaggcga tcgcttccgt cacacggccc aattccgccg ctggcgcacc gacaagaaac
     3841 ccgtggattg cacctacgaa cagctcgaag tcgtcccacc ctacgagatc aaacagattt
     3901 tcggcggcta gttgcctcgc gccactcgcg ggtggggtcg tcgtcggggt cgggagcttc
     3961 ctgcgagggg cgcaggtcct cggggatgtt gcgcaggttt acgcggatac gtgtccaggt
     4021 tgaggagcgg ccgcgcatct tatccaccag cacatcgtca gccgctaggt atttcactac
     4081 tttccgatgt ttgcgcttcc atctgtccaa gcccgctaga gctgcttcct ggctgggtga
     4141 attcgcaata accagcaacg gcatccgtgt ccgcgccggc ttctttttag ccgcggtacg
     4201 cttcgaggtg ccggaagcgg agcgggcgcg ggagggagct acgcgagggg cttcgccttc
     4261 catcttctga aagtgcggag gccagggtgc gtcgccaaga ccggcggcct cgtcgcgcgc
     4321 ggcgagttcg agcagttggt ccaacgagcc cgcctttaga tccatctccg catgcgcgtc
     4381 acccagctcc gcaagccgcg gcggcgccgt caacacgttg aagtccgccg gatcgcaagt
     4441 ctcaacttcc tcccaacgca acggcatcga cacacgcgca tcaggcagcg gccgcactga
     4501 atacgccgaa cacgtcgtac gatccttcgc gttctggttg taatccagaa acactccatg
     4561 ccgctcttct ttccaccact tcgacgtcgc gagcttcggc acccgccgct cgatctcacg
     4621 cgaaagcgca accgccgccc gccgcacctc actaaacgtc caacgctgct cgatacgcac
     4681 gttcacatgc atcccgcgcg agccactcgt cttgggccaa ccgcgcagct tcatctcttc
     4741 gagcaacgcc ttcacttcca tcgccacgcg ccgcacatcg tcccagccaa cgcccggacc
     4801 aggatcgaga tccacgcgta actcgtcagg atgatccaga tcgcctgatc gaacaggatg
     4861 cggatgaagc tcgatacaac caaggttcac gatccatgca agcccggccg catcgtcaac
     4921 gactatctc
//
LOCUS       DASWTX010001074         1509 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_186157, whole genome shotgun sequence.
ACCESSION   DASWTX010001074 DASWTX010000000
VERSION     DASWTX010001074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186157"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            83..418
                     /locus_tag="VGD38_16355"
     CDS             83..418
                     /locus_tag="VGD38_16355"
                     /inference="COORDINATES: protein motif:HMM:TIGR03433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEY0729655.1"
                     /translation="MAKDKADLLQGTLDMLILKSLSLGELHGYGIIQRIRQLSDEMLN
                     VEQGSLYPALYRIEQKGWVSAHWDTNETGREAKFYKLTRAGRKQLETQEASWDRLVLA
                     IAKVRQATA"
     gene            443..>1509
                     /locus_tag="VGD38_16360"
     CDS             443..>1509
                     /locus_tag="VGD38_16360"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0729656.1"
                     /translation="MKWFNILRDRLRALRQRDTVINDIDREMRSHLDLQTEANIRAGM
                     SPAEARVQALRSFGKVDRAVDAAYDVKGGGVFETVMQDVRYGVRMLTKHKAFTAVAVI
                     TLALGIGANTAIFSVVNELLLRPLPYRDAERIVMLWEVTPEGRRQNTTSRVNFRAWRD
                     QNSSFAQMAAFTDQRLNLTGVGEPEELSVQMATPEIFKVLGVDPILGRTFLAEDDQAG
                     NSPVAVLSYALWQRQFGGQSNIIGQAITLNGVRVTIVGVMPASFQFHIKHRSGTGRPA
                     ELWTILPMPIGAGANERGRFLSVVARLKDGVSVELAGAELRTIEARLSEEAPQFNANY
                     SAEVLPLREQFFGNVRRPLWL"
BASE COUNT          318 a          415 c          465 g          311 t
ORIGIN      
        1 cctcacgtac actttgacac tctaggcatg ctcgcgtatt atgcctaccg attctaggca
       61 tcaatgatcg cgaggagatt acgtggcaaa agacaaggcc gatctgttac agggcacgct
      121 cgacatgctc attctcaagt cgctctcgtt gggtgagttg catggatacg gaattatcca
      181 gcgcattcgc caactttcgg atgagatgtt gaacgtcgaa cagggctcgc tctacccagc
      241 gctctatcgc atcgagcaaa agggttgggt ctctgcgcat tgggacacga acgaaaccgg
      301 acgcgaagcg aagttctaca aacttacccg cgcgggacgc aaacaactcg aaacccagga
      361 agcgagttgg gaccgtctcg tactcgccat cgctaaagtt cgccaggcta ctgcgtaagc
      421 gtttcaaagg aagttgtaag caatgaagtg gttcaacata ctgcgcgacc ggctccgggc
      481 gttgcgccag cgcgacaccg tcatcaacga catcgatcga gagatgcgct cgcatctcga
      541 cttgcagacc gaagcaaaca tcagggccgg catgtcgccg gccgaagcgc gcgtgcaggc
      601 gttgcgcagc tttggcaagg tcgatcgcgc ggtcgacgcg gcgtacgacg ttaagggcgg
      661 cggcgtgttt gagactgtca tgcaggacgt tcgctacggc gtgcgcatgt tgaccaaaca
      721 caaagcgttc actgcggtgg ccgtgatcac gctcgcgctg ggcatcggcg cgaacaccgc
      781 gatcttttcc gtcgttaacg aactgttgct gcggccgctt ccctatcgcg atgcagaacg
      841 gatcgtgatg ttgtgggaag tgactcccga aggccgtcgt cagaacacca cttcgcgcgt
      901 taacttccga gcgtggcgcg atcagaactc gagctttgcg caaatggccg cgtttacgga
      961 tcaacggttg aatctcacgg gcgtgggcga accggaagaa ctgtcggtgc agatggcgac
     1021 gccggagatc ttcaaagtgc tcggcgtcga tccgattctc ggccgcacgt ttctcgccga
     1081 agacgatcag gcgggcaatt ctccggtggc cgtgcttagc tatgcgctgt ggcaacgaca
     1141 attcggcgga cagtcaaaca tcatcggaca agcgatcaca ctgaatggcg tgagggtcac
     1201 gatcgtcggc gtgatgcccg cgagttttca gtttcacatc aaacaccgat cggggaccgg
     1261 gcgtccggct gagctttgga ccatcttgcc gatgccgatc ggagcgggtg caaacgagcg
     1321 cggtcgcttt ctttcggttg ttgcgcgttt gaaagacggc gtgtcggtcg agctggccgg
     1381 ggcggagttg cgcacgatcg aagcgcgttt gtcggaagag gcgccgcaat tcaatgcaaa
     1441 ctactcggcg gaagtcttgc cgttgcgcga acagttcttt gggaacgtgc ggcgcccgct
     1501 gtggttgat
//
LOCUS       DASWTX010001075         2349 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_37203, whole genome shotgun sequence.
ACCESSION   DASWTX010001075 DASWTX010000000
VERSION     DASWTX010001075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2349
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37203"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..251
                     /locus_tag="VGD38_16365"
     CDS             <1..251
                     /locus_tag="VGD38_16365"
                     /inference="COORDINATES: protein motif:HMM:NF023428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729657.1"
                     /translation="AVKNAYHAAVTDAAETARVPVPLHLRNAVTPLMKQVGYGKEYRY
                     VHNDARAKEEMECLPEQLRGRKYFNPDDVEPKNDQGDE"
     gene            251..1075
                     /locus_tag="VGD38_16370"
     CDS             251..1075
                     /locus_tag="VGD38_16370"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY0729658.1"
                     /translation="MSSGKTDKELAFLQDLFIAPDWGERFAELIDEHVPLPKEGRALY
                     AAAGTGSHALALQERGGNKLTLLGVDESSECIELAQAKATATNEQTEFRIGTLDNLDL
                     PENRFDLVVGNASLVSRSRVRKMFAEMVRVAAPGATIALALPTASSFGEFFSIYWEAL
                     HNLGLMDHEVDVEQLITELPTVSDVEQMADDEGLKDIASWTRIEEFDYDSGEQFLTSP
                     LVAEFLMQQWLALVPETDRADLFREITRLINEERHEAEFALSVKATLVVGQKEHSH"
     gene            complement(1112..1309)
                     /gene="tatA"
                     /locus_tag="VGD38_16375"
     CDS             complement(1112..1309)
                     /gene="tatA"
                     /locus_tag="VGD38_16375"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEY0729659.1"
                     /translation="MSQNMLAIFNLGPTEMVLIVAVIFLLFGATRLPQLAKALGQSKK
                     AFREGIEEGEREPVKESEKSA"
     gene            complement(1358..1810)
                     /locus_tag="VGD38_16380"
     CDS             complement(1358..1810)
                     /locus_tag="VGD38_16380"
                     /inference="COORDINATES: protein motif:HMM:NF025637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEY0729660.1"
                     /translation="MIFKGVARVEEHNGHVLHSQKLVIHAPSVIRLTEYIHIPFERRS
                     LSRKNILLRDHSTCQYCGKQYPPSELTLDHVQPRSRGGESAWDNLVACCKRCNHKKGN
                     RTPEESGMHLLRRPRGFSLHVNRQIMRYLGRADETWRKYLFYESDNRE"
     gene            complement(1905..>2349)
                     /locus_tag="VGD38_16385"
     CDS             complement(1905..>2349)
                     /locus_tag="VGD38_16385"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HEY0729661.1"
                     /translation="LSLKRRPHISTLLIDLLLGAAQREPLNTATLIIPVPLHETRQHE
                     RGFNQASVIAEALANTLHLPVDQATLWRPRASEKYRAGLDPKGRRDTVAGVFEVRHPK
                     LVEGETILLVDDVFTTGATVNFCAEALLASGACNVVVLTIARGKS"
BASE COUNT          504 a          648 c          707 g          490 t
ORIGIN      
        1 acgccgtgaa gaacgcatat cacgcggccg taaccgacgc cgccgaaacc gcgcgcgtgc
       61 ccgtgccgct acacttgcgc aacgcagtca cgccgttgat gaaacaggtc ggttatggca
      121 aagagtatcg ttacgtccac aacgacgcgc gcgccaaaga agaaatggaa tgtttgccgg
      181 aacaactgcg tggaagaaag tatttcaatc cggatgacgt ggaaccaaaa aacgaccaag
      241 gggacgaata gtgagtagcg gaaaaaccga caaggaactg gcctttcttc aagacctttt
      301 tattgcgcct gactggggcg agcgctttgc cgaactgatc gacgagcacg tgccgctacc
      361 gaaggaaggc cgcgcgctct acgccgccgc cggaaccggc agccatgcgt tggcgcttca
      421 ggaacgcggc ggcaacaagc tgacgctgct cggcgttgac gaaagttccg agtgcatcga
      481 actggcccag gccaaagcca cagcgacaaa cgagcaaacc gagtttcgta ttggcacgct
      541 cgacaatctc gacctgcctg agaatcgttt cgatctcgtc gtcggcaacg cttccttagt
      601 gtcgcgttcg agagtgcgga agatgtttgc cgagatggtg cgagtggcgg cgcccggcgc
      661 gacgatcgcg ctcgcgctgc cgaccgcttc cagcttcggt gaattcttct cgatctactg
      721 ggaagcgcta cacaatctcg gcctgatgga ccacgaagta gacgtcgaac agttgatcac
      781 cgaactgccg acagtctccg acgtcgagca gatggccgac gacgaaggac tgaaagacat
      841 cgcgtcgtgg acgcggatcg aggagtttga ctacgactcg ggcgaacagt ttctcacgtc
      901 gccgctcgta gcggagtttc tgatgcagca gtggttggcg cttgttcccg agaccgaccg
      961 ggcagaccta ttccgcgaga tcacccgatt aatcaatgaa gaacggcatg aggctgaatt
     1021 cgcgctttcg gtgaaagcga ctttagttgt agggcagaag gaacacagtc actgagctgg
     1081 ggttagtagc taagccgtct gccaacagcc gctacgccga tttctcggac tctttgacag
     1141 gttctctttc gccttcttcg atgccttctc tgaacgcctt tttgctctgg cccaaagctt
     1201 tcgcgagttg gggcaggcgt gtggcgccaa agagcaggaa gatcacggcc acgatcagga
     1261 ccatctctgt tggtccgagg ttaaagattg ccagcatgtt ctgactcata gtttcctctt
     1321 ctctcgaatg gccgcagggg cgccgccact gagctagtta ttcccgattg tccgattcgt
     1381 aaaacaggta ctttctccag gtctcgtctg ctcgtccgag ataccgcatg atctggcggt
     1441 tcacgtgtag cgagaaacca cggggtctgc ggagcaggtg catgccggat tcctccggag
     1501 tgcggttccc cttcttgtgg ttgcatcgct tgcagcaggc caccagatta tcccacgccg
     1561 actcccctcc gcgcgagcgc ggctggacat gatcgagcgt gagctccgag ggcggatact
     1621 gcttgccgca atactggcag gtcgagtggt cacgcagcag gatgttcttc cgcgagagcg
     1681 agcgccgttc gaaaggtatg tgaatgtact cggttagccg gatcaccgag ggtgcgtgga
     1741 taacaagttt ttgtgaatga agtacatggc cgttgtgctc ttcgacccgc gctacgccct
     1801 tgaagatcat cacgatagca cgcctttctg tgcacacgtt gacgggctcg taggacgtat
     1861 tcaggactaa aacgcggcca ttcataacgg cgtgatatta cgcgctaact cttccctcgc
     1921 gcaatggtta acacaacgac attacaggcg cctgacgcca aaagcgcctc ggcgcagaag
     1981 ttaaccgtgg cgccggtggt aaaaacgtcg tccaccagaa ggatggtttc gccctcgacc
     2041 agtttcgggt ggcgaacctc gaaaactccc gccacagtgt cgcgacggcc tttcgggtcg
     2101 agtccggcgc ggtacttttc cgaagcgcgc ggccgccata gagttgcttg atcgaccggg
     2161 aggtggaggg tatttgcgag cgcttcggcg atgactgagg cctggttgaa gccgcgttcg
     2221 tgttggcgtg tttcgtgtaa agggactggg atgatgaggg tcgcggtatt cagcggctcg
     2281 cgttgcgcgg cgccgaggag gagatcgatt aacaacgttg agatgtgcgg acggcgcttc
     2341 aatgaaagc
//
LOCUS       DASWTX010001076         2214 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_232731, whole genome shotgun sequence.
ACCESSION   DASWTX010001076 DASWTX010000000
VERSION     DASWTX010001076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2214
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232731"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2111)
                     /locus_tag="VGD38_16390"
     CDS             complement(<1..2111)
                     /locus_tag="VGD38_16390"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0729662.1"
                     /translation="MINDIRYALRTLAKSPGFACVVIFTLALGIGANAAIFSLMDRVR
                     LQSLPVTNPDQLAVLSSYDPKEGPDIGSSFSYPMYLDLRDKNDVFSGVIVRGGTQMNV
                     SYGDQTERVRGELVSGNFFEVLGVRPWAGRLFTQDDDRTPGAHPVAVLSYAYWESRFG
                     KDPNLIGKTIIVNEHPLTVIGVTPPGFYGVSLSSNPDVRVTMMMTPVFNPLPPTRLQS
                     RRHQWLSIMARRKAEVSEQQAQASLDVLYRQLLESEAQQLPPSTSPYNREQFLAQRIA
                     LLPGDQGLRHMQVELKTSLLLLFGATCAVLLILCANLANLMMARATVRAQETAVRLAL
                     DAGRLRLLRQWLTEGIVLAAIGGVVGVVIALWIKSALMAFIPPDFRVNLDNSFDWRLY
                     LFIFGVALLLGVAFSLAPAIQAARQVFAPGLRLESRSFTSAGRLVSLRSGLILVQVAL
                     SLPLLVTAALLLKTLLNLRAVDTGFGKENVLLASLNPTLNGYTPERSANFYNELLART
                     RALPGVKFASLASDSPLSGSWDQYGIVVEGYTPREGERMGSDVTLVSTDYFKALAIPL
                     VTGRDFNDEDRQGSPKVVIVNEQMAKHFFGTTDVLGKKIGLEKVPDITIVGVVKDAQY
                     VNLRRERRRHFYLPTMQEKVLMNLTVLVKTDTDPPVVAESLRAGLKSRDPHLPLYNVK
                     TLATEIDESLVQERLVTWLSAA"
BASE COUNT          479 a          699 c          633 g          403 t
ORIGIN      
        1 gcagccgaaa gccacgtcac cagccgttcc tggaccagcg actcgtcgat ctcagtcgca
       61 agcgtcttga cgttgtagag cggaaggtgc ggatcccgtg atttcaatcc cgcgcgcaac
      121 gattcggcga ctaccggcgg atcggtgtcg gttttgacga gcaccgtgag gttcatgagc
      181 accttctcct gcatcgtcgg cagatagaag tgccgccgcc gctcacggcg cagattgacg
      241 tactgcgcat ccttcacgac gccgacaatc gtgatgtcgg gaactttttc gagaccgatc
      301 ttcttcccga gcacgtcggt agtgccgaag aagtgtttcg ccatctgctc gttgacgatc
      361 acgactttcg gacttccctg ccggtcctcg tcattgaagt cgcgtcccgt gacaagcggt
      421 atcgcgagtg ctttgaaata gtcagtcgaa acgagggtca catccgagcc cattcgttcg
      481 ccttcacgcg gcgtataacc ctcgacaacg atgccgtact ggtcccaact tccggaaagc
      541 ggcgagtcag acgcgagact ggcaaacttc acgcccggca gcgcacgcgt gcgcgcgagc
      601 agttcgttgt aaaagtttgc cgaacgttcg ggtgtgtaac cgttcagcgt cggattcaga
      661 ctcgcgagca gcacgttctc tttaccgaaa cccgtatcga ccgcacgcag gttcagcaac
      721 gtcttgagca acaacgccgc ggtcacgagc aacggcaacg agagcgcgac ctggaccaaa
      781 atcaatccgc tacgcaaact cacgagtctt cccgcggacg taaaactgcg cgactcgagc
      841 cgcaatcccg gcgcaaacac ctgacgcgcc gcctggatcg cgggcgcaag actgaatgcg
      901 acgccaagca acagcgccac gccgaagatg aacagataca aacgccagtc gaaagagttg
      961 tcgagattga cgcgaaagtc aggcgggata aacgccatca acgccgactt gatccacaac
     1021 gcgatgacga cgccaaccac gccgccgatg gccgcgagca cgattccttc agtcagccac
     1081 tgccgcagca aacgtaaccg gcccgcgtcc aacgccagac gcaccgcggt ttcctgtgct
     1141 cgcacggtcg cgcgcgccat catcaggttc gcgaggttcg cgcaaagaat cagcagcacc
     1201 gcgcacgtcg caccgaagag tagtaacagc gacgtcttca gttcgacctg catgtgacgc
     1261 agcccttgat cgccaggcag taacgcgatc cgttgggcca aaaactgctc gcgattgtaa
     1321 gggctcgtgc tcggcggtaa ctgttgcgct tccgactcga gcagttgccg gtaaagcacg
     1381 tcgagtgacg cctgcgcctg ttgttcgctg acctccgcct tgcggcgcgc catgatgctc
     1441 aaccactgat gacggcggct ctgcaaacgc gtcggcggca gcgggttgaa caccggcgtc
     1501 atcatcatcg tcacgcgcac gtcgggattg ctcgaaagac tcacaccgta gaatcccggc
     1561 ggcgtgacgc cgatgaccgt cagcggatgt tcgttgacga tgatggtctt gccgatcagg
     1621 ttcggatctt tgccgaaacg gctttcccag tacgcgtaac tcaacactgc aaccgggtgc
     1681 gcgcccggag tgcgatcgtc gtcctgcgtg aagagccgtc cggcccacgg ccgcacgccg
     1741 agcacttcga agaagtttcc gctgacgagc tcgccgcgca cgcgttcggt ctgatcgccg
     1801 taactcacat tcatctgcgt gccgccgcgc acgatcacac cggagaagac gtcgtttttg
     1861 tcgcgcaggt cgaggtacat cggatacgag aacgagctgc cgatgtctgg tccctccttc
     1921 gggtcatacg acgacaacac cgcgagctga tcggggttcg tcaccggcag gctctgcaac
     1981 cgcacgcggt ccatcagcga gaagatcgcg gcgttcgcgc cgatgccgag cgcgagcgta
     2041 aagatcacga cacaggcaaa gcccggactc ttcgcgagcg tgcgtaacgc gtaacgaatg
     2101 tcattaatca tgcgcgtatt tacccttcaa ttattcgtag cggagcgcga tcaaaggatc
     2161 gactttcgtc gcgcggcgcg ccgggacgta acacgccaaa aacgaaacga gcag
//
LOCUS       DASWTX010001077         6357 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_143153, whole genome shotgun sequence.
ACCESSION   DASWTX010001077 DASWTX010000000
VERSION     DASWTX010001077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6357)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6357)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6357
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143153"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            467..1009
                     /locus_tag="VGD38_16395"
     CDS             467..1009
                     /locus_tag="VGD38_16395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729663.1"
                     /translation="MSKPATTIDLAAFKKQLADSLERQARAAGQTIVKESLTCEMATG
                     LQVITAALKRDELPAEKEITTGVDLFYAYVSIDGQRALPPGHYRIRLALPGYENRGDV
                     KVSFIDANGKAVHSLTGKGKRRRLRPGTDDANITTLSLRVSVCGRKKCFNFTRNGFLD
                     WEWGCTDSDGNTINCLDRQP"
     gene            complement(1114..1413)
                     /locus_tag="VGD38_16400"
     CDS             complement(1114..1413)
                     /locus_tag="VGD38_16400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729664.1"
                     /translation="MRGFPLERTLSLIIAAAYIVITAVFAYSKGKLLADLLIVCGALL
                     LPMACIWFGDELGEYIGALPGPGITRKSPGWMVKIGGWVLLLLPTVVFFWFIYES"
     gene            1624..1941
                     /locus_tag="VGD38_16405"
     CDS             1624..1941
                     /locus_tag="VGD38_16405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729665.1"
                     /translation="MTGSKLLFIVPVTYLLGVIVCVLLAFDYAGAVDSGWVLVLICLT
                     LPWSIVSFIFTWALIHGAGLGFFTVMYLTFAGINAFILYRISLVIYRSFKKEAGGAVE
                     PPR"
     gene            2393..3124
                     /locus_tag="VGD38_16410"
     CDS             2393..3124
                     /locus_tag="VGD38_16410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0729666.1"
                     /translation="MKYFWLSLALIVTTAVSAYSQTATFVGRVTDQNTGLAIPNVAVV
                     AVGNQTGTRVAITDTQGNYTLPIGANSNVKLRADRTNFVFNPLQVIFTSVGAPVIAPP
                     PQDFIGSALPFPILIFGLEPILLTEDDSLKALSLDAITSQRDPFPLVNNNYVGNDKRT
                     RIKLFLVDLDIFSGETLSILTAQAIDQLQVPHSLPVEDLRKVPGVPWLSQLTVRLPGD
                     LLSGEFKVSVTLRGKTSNSGTFRVQ"
     gene            3135..3797
                     /locus_tag="VGD38_16415"
     CDS             3135..3797
                     /locus_tag="VGD38_16415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729667.1"
                     /translation="MGIEWIIGVLGFVGTLLLVIVGLLNFSVFRKQLRIAKDQIDTAV
                     RQLEIAQKQPDLYLIQRAVTETSNHLRLFVEHPNLRPYFYSEAEWQPGDEVSLDEIKA
                     MAELILNNFASALMHSAAFPEYPVRGVDRIIMFHLRRSPALRDFLLENFERFPFTGLT
                     LLCLKNETRDQVEADLRQLIAAPNADETEVKRRQDLLQLFQSSAIREPIEFTSYSMKR
                     RR"
     gene            3816..4523
                     /locus_tag="VGD38_16420"
     CDS             3816..4523
                     /locus_tag="VGD38_16420"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4440 domain-containing protein"
                     /protein_id="HEY0729668.1"
                     /translation="MMKVMRVAIVFLLLIPALVQAQSHGTKEEKTKEEIQKLFSDLNE
                     AITKRDRARLEQLYADEFQFIRPSGAVINKSTQISGIMANDPLSSTPVPAPATDSLML
                     YGDVAVARHTLRGTAISSVFVKKNGQWQLLQAQGTRLAPERNPIKLDPRLLGAFIGRY
                     EFGPNAVATVTREGDALRWRGGNRMPVTLVPLSETHFYAKETETEMMFAKNDNGPVTG
                     VVLRIGSCQDSKAKKIQ"
     gene            complement(4593..5447)
                     /locus_tag="VGD38_16425"
     CDS             complement(4593..5447)
                     /locus_tag="VGD38_16425"
                     /inference="COORDINATES: protein motif:HMM:NF013360.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016641 - oxidoreductase activity, acting
                     on the CH-NH2 group of donors, oxygen as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysyl oxidase family protein"
                     /protein_id="HEY0729669.1"
                     /translation="MPKLRYLLIFLPLCAAVGVSWLTYARESGPTAVDGPNLSVREDV
                     LGSQWVVRDEKISAEACSAIEGGVSPGLRRLVRFTVMTPNTGNQDIFVGDPNDHVAAN
                     DGLFEFASCHNHFHFRHYALYELVDPSTGQVWRAAKRGFCMLDTDPNPVPVGGVPPRS
                     GKYRNCGAVGFPGNQGITAGWADTYRFTLAGQYFVLDGGDGQEPVPPGDYIIRVTVNP
                     PFVAKRNEPCPNVDSNGFCHQLPETNYDDNIGVTAITIPAHPGRQGTGPLAGNTEPAE
                     ECDHGCRP"
     gene            5895..6194
                     /locus_tag="VGD38_16430"
     CDS             5895..6194
                     /locus_tag="VGD38_16430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729670.1"
                     /translation="MTVVILEDAAEDLEIGAQFYEFCATGVGDYFLDSILSDLDSLVL
                     FAGVHPTYFGFYRMLSKRFPFGIYYEMEDEMVYVYAILDLRRDPLWIRERLEKRS"
BASE COUNT         1533 a         1748 c         1702 g         1374 t
ORIGIN      
        1 gcgagtgtgt gcaccgtggt cggaatcttt cctcgtcgac atccagcaaa gaccgacttt
       61 gaaaaggagc aagccgtaat tcgggttcgc gatcaaaaga caaagtgggc tcgttttgtc
      121 ctcgttcctt tcttgtgtgg cttcgcgacc ctactttacg tcatcgcagc gcagatttgg
      181 actctttatc cgttcgaata aagccgggca gatcttttag cttgtatgcc tatcgacggc
      241 agcattattg aaatgttcgg ctgggtggtt ctgaggtttt tatgaaaatt ctttgaagca
      301 gtgtaccgaa cgcagacctg ccgagcaaaa accggctcaa gtaaatttca gcggcgccta
      361 aatactttgg cccactctcc tcactaatat cctgcccatg gccagaccaa cacctcgcgc
      421 tttccaataa attacctacc aaccacctac aaaaggagta gatatcatga gcaaaccagc
      481 aaccaccatc gaccttgcag ctttcaaaaa gcaacttgcc gactcgcttg agcgccaggc
      541 cagagctgcc ggacagacaa tcgtcaagga atcactgacg tgtgaaatgg cgactggctt
      601 acaagttatc accgccgccc tgaagcgtga tgagttgccg gctgagaaag agatcactac
      661 cggcgtcgat ctgttctatg cgtacgtttc gatcgacggc cagcgcgcgt tgccgccggg
      721 tcactaccgc atccgtctgg cgctgccggg atacgagaac cgtggcgacg tcaaagtctc
      781 gttcatcgac gcaaacggga aagccgttca ctcgttgacg ggcaaaggta aacggcgccg
      841 cctcagacca ggcacagacg acgcgaacat caccaccttg tctctgcgcg tgagtgtctg
      901 tggccgcaag aagtgcttca acttcacacg caacggcttc ctcgactggg agtggggctg
      961 cacggattca gacggcaaca ccatcaactg cctggaccgc cagccgtaat cgtgcctcat
     1021 tcagatcgtg tgaaaaagtt tgcggcttgg gtgaaggtgg ctgaagattc accacttcac
     1081 tcaagccggc agcgcttcgt gagagtgaaa cgtttagctc tcgtagatga accagaagaa
     1141 gactaccgtc ggcagcaaga gcagcaccca cccgccgatt ttcaccatcc accctggcga
     1201 cttgcgtgtg atacctggtc cagggagcgc gccgatgtat tcgcccaact catctccgaa
     1261 ccagatacat gccatcggca acaaaagtgc gccgcacacg atcaatagat ccgcgagcag
     1321 cttgcccttc gagtaggcga agacggcggt aatcactata taagctgcgg caatgatcag
     1381 cgacagcgtt cgctcgagag gaaatccacg cataacgtca ctcgatggtc ccacaccgat
     1441 tccaattcta acccaagccc tgttcagccg agcgagtttc tttcgacgcc gaggcgccgc
     1501 ccgtcatgtg gtttcccaca gcggacaatc gtgcctgaac gcacaggctt tgcttcgcgt
     1561 atagagtggc ggggctaaga tgttggaacg gaaaacgctt tgtccaacag aggagattct
     1621 caagtgacag gatcaaaact tcttttcatt gttccggtga cttacctgct gggcgttatc
     1681 gtgtgcgtgt tgctggcttt tgattacgcg ggtgctgtcg attctggctg ggtgcttgtg
     1741 ctcatctgtc tcacgctccc atggagcata gtgtcgttca ttttcacgtg ggcgctgatt
     1801 cacggcgctg gactcgggtt ctttactgtg atgtacctga cgtttgccgg catcaatgct
     1861 ttcattctct accgaatcag cctagtgatt tacaggtcgt tcaagaaaga agccggaggc
     1921 gcggtagagc cgccacgata gtaagtaaag gatggcggtg atcgggatga gggtgccggg
     1981 ggaaaccaga attctccagt tcaataccgc acaggccagg atcgcgatga gtgcgatagc
     2041 ggcgccagcg aactcccatt tccaggcgag caacaggccc acaagcgaca agaccaacgt
     2101 cgcgagaata acgtaatcag cccaaatcaa cggccgagac gcctggccct gctcgccaat
     2161 caaatgtgcc acgagaaaaa agccgaagaa caaaacgatt agaccactaa gtatgcgagc
     2221 accccaccgg accagcgaca cagaagacat aagtcaacct ccccaaacat tacggcgcag
     2281 attacatgct ggaccggcta agactgcgcc aggcttgtga cacttttctt actgtgctac
     2341 tttcccggca aaggaaaccc agatcctcga aacgcactga ttcctcgata ccatgaagta
     2401 cttctggctt tcactcgccc tgatcgtaac gactgctgta agcgcctatt cacagaccgc
     2461 tacattcgta ggccgggtca cagatcaaaa caccggcctc gcgattccga atgtcgccgt
     2521 ggtcgccgtc ggtaatcaaa caggaactcg cgttgccatc accgatacgc agggcaacta
     2581 cacgcttccc atcggcgcga acagcaacgt taagttgcga gcggaccgca cgaatttcgt
     2641 tttcaatcct ttgcaggtga tattcacgtc cgtcggcgct cctgttatcg ccccaccacc
     2701 gcaggatttc atcggctcgg ctctgccgtt tccgattctc atctttggcc tggaaccaat
     2761 cctgttaacc gaggacgatt cactcaaggc gttatcactt gacgccatca cttcccaacg
     2821 cgatccgttt ccgctcgtaa acaacaacta cgtaggcaac gataagcgaa cgcgcatcaa
     2881 gttgtttctg gtcgacctcg atatcttcag cggcgaaaca ctctcgattt taacggcgca
     2941 agcgatcgat cagttgcaag tgccgcacag cttgccggtt gaagatttgc gcaaggtccc
     3001 gggcgttccg tggttgagtc aattgacggt gaggctgccg ggcgatttac tgtccggaga
     3061 atttaaagtg tcagtgacgc tacgcggcaa aacgagcaac tcaggtacat ttcgcgttca
     3121 gtgactaaac agggatgggg atcgaatgga taatcggcgt gcttggtttc gtgggcacgc
     3181 tgctactcgt aatcgtcgga ctgctgaact tctcagtctt tcgtaaacag cttcgaatag
     3241 ccaaggacca gatcgacacg gccgtgcggc agttggagat cgcgcaaaag cagcctgatc
     3301 tgtacctgat ccaacgcgct gtcaccgaga cctcaaacca tctgcggctg ttcgtcgagc
     3361 acccaaacct gcgaccgtac ttctacagcg aggcggagtg gcaacccgga gacgaagtct
     3421 cgttagacga gatcaaagcg atggcggagc tcattctcaa caacttcgcc tcggcgttga
     3481 tgcactcggc ggcgtttccg gaatatcccg ttcgcggcgt cgatcgaatc atcatgtttc
     3541 atctgcgtcg cagtcccgcg ttgcgcgact ttctgctcga gaacttcgag cgtttcccgt
     3601 tcacgggtct gacactcctg tgcctcaaga acgagacacg cgatcaggtc gaggcagatc
     3661 tgcgacaact cattgcagca ccgaatgcgg atgagacgga ggtcaaacgc cgccaggacc
     3721 tcttacaact ttttcagagt agcgccatac gcgagccgat tgagttcacg tcgtacagca
     3781 tgaaacggcg gcgttaattt acagaggaga tcatcatgat gaaagtgatg cgcgttgcga
     3841 tcgttttcct gttgttgata ccggcgttgg tccaggcaca aagccacggg accaaagaag
     3901 agaaaacgaa agaagagata caaaagctgt tcagcgatct gaacgaagcg atcaccaaac
     3961 gggatcgcgc caggctggaa caactctacg cggacgagtt tcagttcatc cgtccgtcgg
     4021 gagcggttat caacaagtcg acgcagatca gcggcatcat ggcgaacgat ccgctttcct
     4081 caacaccggt tccagcgccg gccaccgata gtctcatgtt gtacggcgac gtagcagttg
     4141 cacgacacac actccgcggc acggctatca gcagtgtctt tgtaaaaaag aacggtcaat
     4201 ggcaattgct acaagcgcaa ggcacgcgtc tcgcgcccga gcgcaatcca ataaagctcg
     4261 atcccagact gttgggcgcc ttcatcggca ggtatgagtt tggaccaaac gccgtcgcca
     4321 ccgtcacgcg tgaaggcgat gctcttagat ggcgtggcgg aaaccggatg cccgtgacgc
     4381 tggtcccttt atcagagaca cacttctacg ctaaagagac ggagacggaa atgatgttcg
     4441 cgaagaatga taatggaccc gtcaccggcg tcgtgctgag gataggctcg tgtcaggact
     4501 caaaggcgaa gaagattcag taacgagatg tgaatcctgg accgcgcgcc gttgcagaca
     4561 cgaggtccag gttcgtagaa gcagtcgctt cttcaaggac ggcatccgtg atcgcactcc
     4621 tcagccggtt cagtattgcc cgcaagtggc cctgtgcctt gacgtcccgg atgagccgga
     4681 atcgtgatcg ctgtcacgcc gatgttgtcg tcgtaattag tctccggcaa ctgatgacag
     4741 aaaccattac tatcaacgtt cgggcaaggc tcgttacgct tggcaacgaa aggtggattg
     4801 acggtaacgc ggatgatgta gtcgcctggc ggcacaggct cctgtccatc accaccatct
     4861 aaaacaaagt attgtccggc aagcgtgaat cgataagtat cggcccagcc cgcggtaata
     4921 ccctgattac ctggaaatcc gaccgcgccg cagtttctgt attttccaga acgaggtgga
     4981 acaccaccga cgggaacggg gtttggatcc gtatcgagca tacagaagcc acgcttcgcc
     5041 gcgcgccaaa cctggcccgt gcttgggtcg acaagttcgt aaagcgcata gtgccgaaaa
     5101 tggaaatggt tatggcacga tgcaaactcg aagagaccat cgttggcggc aacgtgatcg
     5161 tttggatcgc cgacgaagat atcctggttt ccggtgtttg gcgtcatcac ggtaaagcgc
     5221 acgagccgcc gcagtcctgg cgataccccg ccttcgatgg cgctgcacgc ttcggccgag
     5281 atcttttcat cacgcaccac ccactgcgaa ccaagaacgt cttcgcggac tgaaagattt
     5341 ggtccatcga ccgcagttgg accactctcg cgggcataag tcagccacga gacgcccaca
     5401 gcggcacaca atggtaagaa gatgagtagg taacgaagtt tcggcataac ttctcctttc
     5461 caaggcaagt tggtctattc cggacaggtc cgattgaaaa tacgactctg gtttgggagg
     5521 attcagcgaa ttggagcgtc aaacattctg gacgcgcaga ggctactcct cgcgtgagag
     5581 caagtcaaga aatcgaacgg gtgacggacg cgaaaaacgc ctctagatgg cggcgagttg
     5641 tttcttgcag cacgcggctc gaggtggtag tgtgacgaca tgattgaagc atcacagatc
     5701 gagagaatgt cagtgaccga acggctgcgg gcaatggacc agctttggga atcactcaat
     5761 cgatgcggcg acgagatacc ctcaccggac tggcatcaag acgttttggc tgacaggaaa
     5821 gcgcgggccc aaagcggcga agcaaagttt ctaacgctgg cagaactcag atctcgtcta
     5881 cgaagctccg aacgatgact gtcgttatac tcgaggacgc cgccgaagac ctcgagatag
     5941 gtgcacaatt ctatgaattc tgtgcaaccg gagttggcga ctactttctc gattcaatcc
     6001 tctccgatct cgactctcta gttctttttg ccggggttca tccaacctac tttggattct
     6061 atcgaatgct gtcaaagcga tttccattcg gcatctatta tgaaatggaa gacgagatgg
     6121 tttacgttta cgccattctc gacctccggc gcgatcccct ctggattcgg gaacgtttgg
     6181 aaaagagaag ctagacgagc ttttcttaag gcgagccggt gggtatcagg cgccgcgtaa
     6241 tcctcagccg caattgtcga aactggttgc gaacgtaatg agagctcaaa tcatcgtggg
     6301 agtgctggtg gatctaccca tctggttgca ggcggtgggt tgggggcttc tgtctgc
//
LOCUS       DASWTX010001078         3632 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_143211, whole genome shotgun sequence.
ACCESSION   DASWTX010001078 DASWTX010000000
VERSION     DASWTX010001078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3632
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143211"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(286..1368)
                     /locus_tag="VGD38_16435"
     CDS             complement(286..1368)
                     /locus_tag="VGD38_16435"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0729671.1"
                     /translation="MRLAFVAIVLVVVSTTCFAQDTIKVSVEEVRIPIIAKDSGGRFD
                     PTVELNDLLVRDNGIAQPLKSVYRMPASVLLLLDTGEELNRAKNVRLTREATAALIAD
                     LKPDDRIAVMQVNNRVELLQPWTTKQADAIKSLNQLLPGKRTALEAGLLAAIEQFRQI
                     EYGNSHLVLISDGVDTKDEQSDLTDAYRSLLAANVTLHVISYASLGTKVEAPEPARPR
                     VKSAVAPELIEALPRSQRQADPTPDLKSHMKNKGGVLLDIDLLFGRKGIKPALVERTE
                     EFSVLTEETGGNLWLPGTAEEMVRRAHEVARDIDAQYVMSYRPRPPLASSGATEYRRI
                     EVISRRVGLTIKSRRGYVVRPDLLLN"
     gene            complement(1386..3596)
                     /locus_tag="VGD38_16440"
     CDS             complement(1386..3596)
                     /locus_tag="VGD38_16440"
                     /inference="COORDINATES: protein motif:HMM:NF013123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEY0729672.1"
                     /translation="MVNRSSVLLALVLIIAGAVAAQSQQKLLTIDDIFDPVKRVNFNG
                     TTPQIRWLKDGQHYLLTNDASRRDVPRLQKVNAATGEAVAFFDAAKMQAAFAALPGIS
                     ADNARQLANRGNYNMNPAETAVLINWSNDLFYYEFGSDRVVRLTNGPEEEVGEGFSPD
                     GRMVSFVRGNNLYVEDVAMQRRERALTTDGSAKILNGRLDWVYQEELYGRGNFGAYWW
                     SPDSTTIAFLRFDENPVPEFTVVDHIPLYQNVEVTPYPKAGAPNPIVKLGVVNAAGGD
                     IRWVDTFKYQPENFLISRVAWTPDSKKVVFQAQNREQTFLDVNFADARDGKSTNIIHE
                     TSKAWVGINENPIWLKDGSFIWASERNGWEHLYHYSADGKMLRQITDGKWEVRSIEGV
                     DEANGFIYFTGTEHSHIAVHGYRVKLDGTGLQRLTMSEGSHRVDLSPASNYFIDVWSD
                     LNTPSQTRLFDASGKLVRVIAENKVDALKQYKLGAAELLQVKTRDGFVMEAMMIKPPD
                     FDPRKKYPVMSFTYGGPHAPQVRNAWGAATYMWHQLLAQKGYVIWVCDNRTASGKGAE
                     STWPVYRNFGELELRDIEDGLTWLKSQPYIDGTRIGIWGWSYGGFMTSYALTHSKSFK
                     MGIAGGSVTDWRDYDSIYTERYMGTPQNNPEGYKKSSPLHAAKDLHGKLLLIHGAIDD
                     NVHMQNTIQFVYELQKAGKQFELMLYPKSRHGVTDPLLLKHMRQMMTDFIMENL"
BASE COUNT          782 a         1080 c          950 g          820 t
ORIGIN      
        1 attgccttag tcatttctgc tgtcaggcca aacgttcgcg aactgatgga ccaaacggga
       61 ttttctgaag ctctcggcgc ccagaacttt tgcgatgaca tctttattgc gctaaatcga
      121 gcaaaagaac tgatggagaa aaaagggtga aaaagcttga ggccaccatc gcaggtggcc
      181 tccttcttcg gtttattaag gatgaatgct tccccaaatg agactcgaac tctaaggttt
      241 gtaactctcc ggaacccaaa tcgtaaacgg tccaaatgcg cttaattagt tgagcagtaa
      301 atcagggcgg acgacgtagc cgcggcggga tttgatggtt aggccgacgc ggcgcgagat
      361 gacttcgatg cggcggtatt cggttgcgcc ggaggatgcg aggggcggcc ggggacggta
      421 actcatcacg tactgcgcat cgatgtcacg cgcgacttca tgcgctctgc ggaccatttc
      481 ttcggctgtg ccgggtaacc agagattgcc gccagtctct tccgtcagaa cagaaaactc
      541 ctcggtgcgc tcaacgagcg cgggcttgat gcctttgcgt ccgaataaca gatcgatgtc
      601 gagcaggaca ccgcccttgt tcttcatgtg cgatttgagg tccggcgtcg gatcagcctg
      661 gcgctggctg cgaggcaacg cctcaatcaa ctcgggtgca acggcgctct tcactcgcgg
      721 acgcgccggc tcaggcgcct cgaccttcgt gccgagtgaa gcgtaactga tcacatgcag
      781 cgtaacgttt gcagcgagta aagatctgta tgcatcggtg aggtctgatt gctcgtcctt
      841 cgtatcaacg ccatctgaga tcaggaccag gtgactgttg ccgtattcaa tctgacgaaa
      901 ctgctcgatc gcggctaaca gtcccgcttc caaagcagtg cgcttccccg gcagcagttg
      961 attcaacgac ttgatcgcgt ctgcctgctt ggtggtccaa ggctgcaaca actccacgcg
     1021 gttgttcacc tgcatcaccg caatccgatc gtccggcttc aaatccgcga tcagcgcggc
     1081 cgttgcttca cgcgtgagcc gcacgttctt cgcgcgattc aactcctcac ccgtatcaag
     1141 caacaacagc acactcgcgg gcatgcgata gacgctcttc agcggttgcg caattccgtt
     1201 gtcacgcacc agcagatcgt ttaactcaac cgtcggatcg aaacgcccgc ccgagtcttt
     1261 cgcgatgatc ggaatgcgaa cttcttcgac acttaccttg atggtgtcct gcgcgaagca
     1321 cgtcgtcgaa acaacaacca gaacgatcgc tacaaacgcc agccgcataa ggacacctcc
     1381 aaaacttaca ggttttccat gatgaagtcc gtcatcatct gccgcatgtg cttcaacaac
     1441 aatggatccg tcacgccgtg acgcgacttc ggatacagca tcaactcaaa ctgcttccct
     1501 gccttctgca attcgtaaac aaactgaatc gtgttctgca tgtgcacgtt gtcgtcgatc
     1561 gcgccgtgaa tcagcaacag cttcccgtgc aggtccttcg ccgcgtgcaa cggcgagctc
     1621 ttcttgtaac cttcgggatt gttctgcggc gtacccatgt agcgctcggt gtaaatgctg
     1681 tcgtagtcgc gccagtcagt cacactcccg cccgcgattc ccatcttgaa cgacttgctg
     1741 tgcgtgagcg catagctcgt catgaagccg ccataactcc agccccaaat cccgatgcgc
     1801 gtgccgtcaa tgtaaggctg gctcttcaac cacgtcagac catcttcgat atcgcgcaac
     1861 tcgagctcgc caaagttcct gtaaacgggc cacgttgatt cggcgccttt gccgctcgcc
     1921 gtgcgattgt cacaaaccca gatgacgtac cccttctgcg cgagcaactg gtgccacatg
     1981 tacgtggcag cgccccacgc gtttcgcacc tgcggcgcgt gtggtccacc gtaagtaaaa
     2041 ctcatcaccg gatacttctt gcgtggatcg aaatccggcg gcttgatcat cattgcttcc
     2101 atcacgaagc cgtcgcgcgt tttcacctgc aacagttccg cggcgccgag cttgtactgc
     2161 ttgagcgcgt cgaccttgtt ttccgcaatc acgcgaacga gcttgccgct cgcatcgaag
     2221 aggcgtgttt gcgacggcgt gttgagatcg ctccaaacgt cgatgaagta gttgctcgcg
     2281 gggctgagat cgacgcgatg cgagccttcg ctcatcgtga gacgctgcaa gccggtgccg
     2341 tcgagtttga cgcgataacc atgcacggcg atgtggctgt gctcggtgcc ggtgaagtag
     2401 ataaaaccat tcgcctcatc gacgccttcg atcgaacgca cttcccactt gccatccgtg
     2461 atctgccgca acatcttgcc gtcagcggag tagtgataca gatgctccca gccgttacgc
     2521 tcgctggccc agataaacga tccgtctttt aaccaaatcg ggttttcgtt tattccaacc
     2581 caggcctttg acgtttcgtg aatgatgttg gttgacttgc cgtcgcgcgc gtcagcgaaa
     2641 ttcacgtcga gaaacgtttg ctcgcggttc tgcgcctgga aaacgacctt cttgctgtcg
     2701 ggcgtccacg ccacacgcga gatcagaaaa ttctcgggct gatacttgaa cgtgtcgacc
     2761 cagcgaatgt cgccacccgc ggcgttaacg acgccgagct tcacgatcgg attcggcgcg
     2821 ccggcctttg gatacggagt gacttcgacg ttctgataca acggaatgtg atcgacaacg
     2881 gtgaactccg gcaccggatt ctcatcgaaa cgcaaaaacg cgatcgtggt tgaatcggga
     2941 ctccaccagt acgcgccgaa gtttccacgc ccgtacaact cttcctggta aacccaatcc
     3001 aaacgcccgt tcaaaatctt cgcactgccg tcggtcgtca acgcgcgttc gcgccgctgc
     3061 atcgcgacgt cttcgacgta aagattgttc ccgcgtacaa aactaaccat gcgtccgtca
     3121 ggactgaaac cctcgccgac ttcctcttcc ggaccattgg tgagccgaac cacgcgatcg
     3181 ctgccgaact cgtaatagaa cagatcgttg gaccagttga tcagcaccgc agtctcggcg
     3241 ggattcatgt tgtagttgcc gcggttcgcg agttgccgcg cgttatcagc gctgattccc
     3301 ggcagagcag caaacgcagc ttgcatttta gcggcgtcga aaaacgccac cgcttcacca
     3361 gtcgcagcat tcaccttctg caaacgcggc acatcacgcc ggctcgcatc gttggtcaac
     3421 agatagtgct gaccatcttt gagccagcga atttgcggcg tcgtgccgtt gaaattgacg
     3481 cgcttaaccg gatcgaaaat gtcgtcgatc gtgagaagct tttgttgtga ctgtgcggca
     3541 acggcgccgg caataatcaa aaccagcgcc agaagaacgg atgaacggtt aaccaagatt
     3601 tactctccta cgagtttgtc ttcgctggga at
//
LOCUS       DASWTX010001079         2367 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_170473, whole genome shotgun sequence.
ACCESSION   DASWTX010001079 DASWTX010000000
VERSION     DASWTX010001079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2367)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2367)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2367
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170473"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..209
                     /locus_tag="VGD38_16445"
     CDS             <1..209
                     /locus_tag="VGD38_16445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729673.1"
                     /translation="SKGKWALIGTGIGAGVGTGIGYAKYSPDTDDSELYIAMGFLIGA
                     GAGAVSGLLFGQGKRKRVMVYSVD"
     gene            complement(496..747)
                     /locus_tag="VGD38_16450"
     CDS             complement(496..747)
                     /locus_tag="VGD38_16450"
                     /inference="COORDINATES: protein motif:HMM:NF021253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module protein"
                     /protein_id="HEY0729674.1"
                     /translation="MSSPLPFPPPGFDELSREDQLEYIEGLLNYVTTGARYGEIPDGY
                     REALEERLAYYRENGFEGTPWEEFKEELDKEFFQANNLR"
     gene            941..>2367
                     /locus_tag="VGD38_16455"
     CDS             941..>2367
                     /locus_tag="VGD38_16455"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0729675.1"
                     /translation="MDSLVRFLFGHEQAVFTNGRFGFDVRPNILILVLIFLLVAVFIY
                     FIYLRPRTRLSKGTTATLIALRVALLTLMVTLLLRPVVVVSSVIPRSSYVAVVVDDSL
                     SMKLHDVPGGATRLDTIKQTLLNTGTGQTSFLNRLDQKFKTNLYGFSGGLSRLKDGND
                     LFGEGRTSDLAGALEETIKRSSGMPLSAIVLATDGASNVPSDIATTLRELRARDIPVF
                     TIGVGDTTKPLDGELTRINMPRRVLVGSRVNIETFVGLSGYNNTKVLLGVREDGRAIK
                     TEEFNLRGNDTQAINLEITPATPGVHRYTVEITPLDGEITVENNKQDALVEVIEGPLR
                     LLHVEGEPRWELGKIRESLALNEKNVILVSLQRTGENKFYRQGIGNQNELATGFPATE
                     EELFSYDGLVIGSVEAGFFTADQLRSIEAFVARRGAGLLALGGRLSFDGGKYKGTTLD
                     DLLPISLTGGPVDDANSFTPVYKPLL"
BASE COUNT          532 a          688 c          661 g          486 t
ORIGIN      
        1 cgtcgaaagg aaagtgggca ttgattggaa ccgggatcgg cgcgggtgtg ggcaccggga
       61 tcggctacgc aaaatactcc cccgacacag acgacagcga actctacatc gcgatgggct
      121 tcctcatcgg cgccggcgca ggcgccgtca gcggattgct cttcggccaa gggaaacgga
      181 aacgcgtcat ggtctactca gtggattgag acggcgttgg tgagagactg caactacata
      241 gactgtcctc gcagtcactg tgaagtagat taaatacgga aagcgcttca ttcgtgcgcg
      301 gcgaactcga tccgggaaga gtcgaaactg gtacgggttt ttcgctatac gattcagagt
      361 tgcttcaagg tcagcggtga aacgaaaagg caggtctatg tcgtgttgac ggtaccaaaa
      421 aagtgctgag cggatacctt cgttcgcatc cggtgagagg atgaggcgat agatcataat
      481 ttctagagtg aggtactagc gtaaattatt cgcttgaaaa aactccttat ccagctcttc
      541 tttgaactcc tcccagggtg ttccttcaaa accgttctcg cggtagtaag cgagtcgttc
      601 ttcgagtgcc tcgcggtacc catcggggat ctcgccgtat cttgcacccg tcgtgacgta
      661 attcaaaagc ccctcgatgt actcgagttg gtcctcgcgc gatagctcat cgaaacctgg
      721 tggtggaaat ggtagtggtg aagacatact aactcctgcg ccgcagtgta acacaccgcg
      781 tcaacccact cgccgagtta acctttaaat tccacgcacg acaatccggc tcgcggcaac
      841 cgcccggcga ggggctgcta ctaaagacca agtagctcga aaagccggtc gcagtcttag
      901 gcacgcgccg ctcgcgtgta taatatccgg caccaaaaaa atggactctc tggtgcggtt
      961 tctgttcgga catgaacagg ccgtttttac taacggccgg tttggttttg acgtgcgccc
     1021 gaatatcctc atcctggtcc tcatcttttt actcgtcgcc gttttcatct acttcatcta
     1081 cctgcgcccg cgcacacggc tttcaaaagg aactacagcc acgctgatcg cgctgcgcgt
     1141 cgcactgctg acgctgatgg tcacgttgct gttgcggccc gtcgtcgtcg tgtcgtcagt
     1201 gattccgcgc agcagttacg tcgccgtcgt cgtcgacgat tcactgagca tgaagctgca
     1261 cgacgtgccc ggcggcgcga cgcgcctcga caccatcaag cagacactac tcaacacggg
     1321 cacgggacaa acgtctttcc tcaatcgact cgatcagaaa ttcaaaacga acctctacgg
     1381 attttcgggc gggctctccc gtttgaagga tggcaacgat cttttcggtg aaggacggac
     1441 cagcgatctc gcgggcgcat tagaagaaac gatcaaacgt tcttccggca tgccgctgtc
     1501 cgcgatcgtg ctcgccaccg acggcgcgtc aaacgtgccg agcgatatcg caacgacgtt
     1561 gcgcgagttg cgcgcgcgcg acattcccgt gttcacgatc ggcgtcggcg acacaacgaa
     1621 accactcgac ggcgagctca cgcgcatcaa catgccgcgc cgcgtgctcg tcggttcacg
     1681 cgtgaacatc gaaacgttcg tcggactgag cggctacaac aacacgaagg tgctgctcgg
     1741 cgtgcgcgaa gacgggcgcg cgatcaaaac ggaagagttc aacctgcgcg gcaacgacac
     1801 gcaggcaatc aacttggaaa tcacacccgc aactccgggc gtgcatcgtt acaccgtcga
     1861 gatcacgcca ctcgacggcg aaataacggt cgagaacaac aaacaggacg ccctcgtcga
     1921 agtgatcgaa ggcccgctgc gcctgttaca cgtcgaaggc gaaccgcgtt gggagctcgg
     1981 caagattcgc gaatcgctgg cgctgaacga aaagaacgtc attctcgtat cgctgcaaag
     2041 aaccggcgag aacaagttct atcgccaggg catcggcaac cagaacgagc tcgccaccgg
     2101 atttcccgcg accgaagaag agctcttttc ttacgacggc ctcgtgattg gcagtgtcga
     2161 agcgggattc ttcaccgccg atcagcttcg cagcatcgag gcgttcgtgg cccggcgcgg
     2221 agccggcctg ctcgcactcg gcggccgctt gtcgttcgac ggcggcaagt acaaaggcac
     2281 cacgctcgac gatctgttgc caatttcgtt gaccggtggt ccagttgacg atgcgaattc
     2341 ttttacgccg gtctacaaac cgttgct
//
LOCUS       DASWTX010001080         5891 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_124210, whole genome shotgun sequence.
ACCESSION   DASWTX010001080 DASWTX010000000
VERSION     DASWTX010001080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5891)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5891
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124210"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1002
                     /locus_tag="VGD38_16460"
     CDS             <1..1002
                     /locus_tag="VGD38_16460"
                     /inference="COORDINATES: protein motif:HMM:NF012343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HEY0729676.1"
                     /translation="ITILLLAFERLSGVGIFNPALGGDPVLVQHLFWFYSHPAVYIMI
                     LPSMGVISELIANFSRKNIFGYSFVAFSSLAIAVFGFLVWGHHLFVSGQSVYAGMIFS
                     FLSFAVAIPSAIKVFNWTATLYKSSISYDTPMLYALGFIGLFTIGGMTGLFLASLATD
                     VHLSDTYFVVAHFHYIMVGGALMGYLGGLHYWWPKISGRMYPEGWGRFSALVIFVGFN
                     LTFLPQFIAGYLGMPRRYHAYPPEFQVFNVLSTAGASILGFGMLIPAFYFVWSMRYGR
                     IAESNPWHLPGLEWRTQSPPPTENFEVTPVVTWEAYEFAPPEETEVVGKFGPEPERI"
     gene            1034..1750
                     /locus_tag="VGD38_16465"
     CDS             1034..1750
                     /locus_tag="VGD38_16465"
                     /inference="COORDINATES: protein motif:HMM:NF012720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3 family protein"
                     /protein_id="HEY0729677.1"
                     /translation="MIESHATTQEIHGHRALQHHFENMEQQREAGTIGMWVFLVTELM
                     FFGGMFLAYALYRNLFPAAFASASNHLDITLGAVNTAVLIVSSFTMALAVYFTQVGKL
                     RPQIICLVLTLILGLTFLGIKAVEYHEKYTDRLIPGRLIPGAPFGPDVHALHLLPGAT
                     LPQVEMFYWIYFAMTGMHALHMIIGAGLLLFLIIYSVKGRFDPEYHGPVEIIGLYWHF
                     VDIVWIFLFPLLYLLGRHYH"
     gene            1760..2059
                     /locus_tag="VGD38_16470"
     CDS             1760..2059
                     /locus_tag="VGD38_16470"
                     /inference="COORDINATES: protein motif:HMM:TIGR02229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C oxidase subunit IV family protein"
                     /protein_id="HEY0729678.1"
                     /translation="MSEHIVSVRVYFAIFLALLVGTAITVLAAFVDFPWRLNTIVALS
                     IATVKATLVVLYFMHVRYSTRLVWVIVASALFWMGILFAFTFSDYFTRSWLSPGY"
     gene            complement(2053..2415)
                     /locus_tag="VGD38_16475"
     CDS             complement(2053..2415)
                     /locus_tag="VGD38_16475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729679.1"
                     /translation="MNQDRPEVAKPGRTFDSAYSFSFCITLGLVLFIAGLVISLTFGQ
                     SATIGLIFGIPLLLAGLILPVFMMRDLFQRNEVDGVCPYCAAPIKTSDATIRLNCPSC
                     KRLIEVREASLHRSETPQ"
     gene            2493..3464
                     /locus_tag="VGD38_16480"
     CDS             2493..3464
                     /locus_tag="VGD38_16480"
                     /inference="COORDINATES: protein motif:HMM:NF012339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEY0729680.1"
                     /translation="MTPFEEFLNEHDEEAWSAALTALLRSIHEVDRNATQIWFSFYPL
                     ALFEALRQAEDPRKLAQQLLMQGDYFLRDQIDSSHTFLYGHRFWPEVKRETLKHAREL
                     GGENKAALSDQIMAVAKKAASAVKVDQLLVVGITAVAFMTIRQVGLDAFEQSPGKVLI
                     DKKHARKSPDEILRERAKDDSQGLFGFLKTVNKKWTVTYDENDDAAKYRLNHVQDLAW
                     GAADDRSKNWREIDPRRVEGPIPVECRSASCGTCWVGVLGGAEKLSDVAAREGKKIKE
                     FGYIDTTESKPLIRLACQAQAHGAVSIVIPPWNGVFGKYLKAQKQES"
     gene            3744..4661
                     /locus_tag="VGD38_16485"
     CDS             3744..4661
                     /locus_tag="VGD38_16485"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEY0729681.1"
                     /translation="MTQQTRSAFSITQSGRKASGAHARPLLFVLAAALLWSSGGLFIK
                     WTSLSGLELSFCRSFFAAITVAIVTRHEGFGLNRVTGFASVLYAVLLILFVLATKETT
                     AANAIFLQYTAPVYLLILEPLIYKEKFRLRDLVTVLVCVGGMALFFVGQLRPQDVTGN
                     LFALASGLCFAFYFLSLRHPRAREVNRASSVIYGNILAVILTAPWGLAAIPNLTLHDT
                     LSVVYLGVVQLGIAYALFTVAMARGVRSLDAGIICYVEPVLNPVWVFLVLGERPSRWA
                     LLGGAIIVTAVIVHMLLDARLKKAAKAAI"
     gene            complement(4645..5142)
                     /locus_tag="VGD38_16490"
     CDS             complement(4645..5142)
                     /locus_tag="VGD38_16490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729682.1"
                     /translation="MIKHKEAHCLETAVAAAVILEQHGYPPLLLDLESQDLLDHVLFV
                     FKGSGGWGAIGRSRDIALHGRKPVYRSVRDLAWSYFDPFVDFSGRLKGYAVTSLYELG
                     DYDWRFSPRRMRKIEDHLRAIPHRKIRSSDARYEKLLARYHRYKKRYPDRSPSYYDSR
                     PKWLL"
     gene            5498..5638
                     /locus_tag="VGD38_16495"
     CDS             5498..5638
                     /locus_tag="VGD38_16495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729683.1"
                     /translation="MSIVAQRSPDEFDALQTAADRIERAARDLSDALRELAQQRRATD
                     ES"
     gene            5700..>5891
                     /locus_tag="VGD38_16500"
     CDS             5700..>5891
                     /locus_tag="VGD38_16500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729684.1"
                     /translation="MTSMRTERIPEHFGRKNTSVELDAYGIKEPARVYWNLSTPELYE
                     EIARRREGVLSNHGVILVDT"
BASE COUNT         1194 a         1602 c         1706 g         1389 t
ORIGIN      
        1 atcacgattt tgctgctggc gtttgaacgg ctctcgggtg tcggtatttt caatcccgcc
       61 ctcggcggcg atccggtgct ggtccagcac ctgttctggt tttactcgca cccggcggtc
      121 tacatcatga tcctgccgtc gatgggcgtg atcagcgaac tgatcgcaaa cttctcgcgc
      181 aagaacatct tcggttacag cttcgtggcg ttctcgagtc tcgcgattgc ggtgtttgga
      241 tttctcgttt ggggacacca cctattcgtt tcgggccaga gcgtctacgc gggaatgatc
      301 ttctcgttcc tgagtttcgc ggtcgccatt ccgtcggcta tcaaggtgtt caactggacg
      361 gccacgcttt acaagtcgtc catctcgtac gacacgccga tgctttatgc gctcgggttt
      421 atcgggttgt tcaccatcgg cggcatgacg gggctgtttc tcgcgtcgct cgcaaccgac
      481 gtgcacctga gtgacacgta tttcgtcgtc gcccacttcc actacatcat ggtgggcgga
      541 gcgctgatgg gttacctcgg cggcttgcac tactggtggc cgaagatcag cggccgcatg
      601 tatcccgaag gttggggacg attcagcgcg ctcgtgatct ttgtgggctt caacctgacg
      661 tttttgccgc agttcattgc gggatatttg ggaatgccgc ggcgctatca tgcgtacccg
      721 ccggagtttc aggtgttcaa cgtgctgtcg accgcaggcg cttcgatact cgggtttgga
      781 atgttgattc cggcgtttta cttcgtgtgg tcgatgcgct acggcagaat cgcggagtca
      841 aacccgtggc acttgccggg gctggagtgg cgcacgcagt cgccgccgcc gactgagaat
      901 ttcgaagtca cgccggtggt gacctgggaa gcttatgaat ttgcgccgcc tgaagaaacg
      961 gaagtagtcg gaaagtttgg tccggaaccc gaacggattt agaccacaga ttacacagat
     1021 tttgggagtt agcttgatcg agagccacgc aacaactcaa gagatccacg gccaccgcgc
     1081 gctgcagcac catttcgaaa acatggagca gcagcgtgaa gcgggtacga tcggcatgtg
     1141 ggtttttctc gtcaccgagc tcatgttttt cggcgggatg tttctcgcct atgcgcttta
     1201 ccggaatctg ttcccggcgg cgtttgcctc tgccagcaat cacctcgaca tcacgctcgg
     1261 cgccgtgaat accgcggtgc tgatcgtgag cagctttacg atggcgctgg cggtctactt
     1321 cacgcaggtc gggaagttgc ggccgcagat tatctgtttg gtgttgacgc tgattttggg
     1381 tctgacgttt ctcggtatca aagcggtcga gtatcacgag aagtacaccg atcgcctgat
     1441 ccccggccgt ttgattccgg gcgctccttt tggacccgac gtccatgcgc tgcacctgtt
     1501 gccgggcgcg acgctcccgc aggtcgagat gttctactgg atctacttcg cgatgacggg
     1561 catgcacgcg ttgcacatga tcatcggcgc ggggctgctg ttgttcctga tcatctattc
     1621 agtcaagggg cggttcgatc cggagtatca cgggccggtc gagataatcg ggctttactg
     1681 gcacttcgtc gatattgtgt ggatatttct gtttccgttg ctttacctgc tcgggagaca
     1741 ctaccactga caatttggta tgagcgaaca catcgtttca gttcgagttt actttgcgat
     1801 ctttctggcg ctgctggtgg gaacggcgat caccgttctt gctgcgtttg tcgatttccc
     1861 gtggcggctc aacacgatcg ttgcgctcag cattgcgacg gtgaaggcga cgctggtcgt
     1921 gctctatttc atgcacgtgc gttacagcac gcgactcgtt tgggtaatcg tggcgtcggc
     1981 gttgttctgg atggggattc tgttcgcttt tacgttcagc gattacttca cccgcagttg
     2041 gctctctccg ggctactgag gagtctcact ccggtgtagc gacgcctccc gcacttcgat
     2101 caaccgttta cacgatggac agttgagccg aattgtggcg tcagacgttt tgatcggcgc
     2161 ggcgcagtag gggcaaacgc cgtcgacctc gttgcgttgg aagaggtcgc gcatcatgaa
     2221 cacgggcagg attaggcctg cgagcagcag cggaatgccg aaaatgaggc cgatcgtggc
     2281 gctttggcca aacgtcaggc tgatgaccag gccggcgatg aagagtacga gaccgagagt
     2341 aatgcagaat gagaagctgt aagcactgtc gaaagtgcgc ccaggtttgg caacttccgg
     2401 tctatcctga ttcatttttt gagacctcct ggaagggttg tagcacggac tttaccacag
     2461 atccggggct tccgtgctag tctctggcaa atatgactcc tttcgaagaa tttcttaacg
     2521 aacacgacga agaggcgtgg tcggcggcgt tgaccgcgtt gttgcggtcg attcatgagg
     2581 tcgatcgcaa cgccacgcag atctggtttt cgttctatcc gctcgcgctt tttgaggcgt
     2641 tgcggcaggc ggaggacccg cggaaactgg cgcaacagct attgatgcag ggtgattatt
     2701 tcctgcgcga ccagatcgac tcgtcgcata cgttccttta cgggcatcgc ttttggccgg
     2761 aagtgaaacg cgagacgttg aagcacgcgc gtgagttggg cggtgagaac aaggcggcgc
     2821 tttcggatca aatcatggcc gtggcaaaga aggccgcgtc ggctgtgaaa gttgaccagt
     2881 tgctcgtcgt gggaatcacg gcggtggcgt ttatgacgat ccgtcaggtt ggtctggacg
     2941 cgtttgaaca gtcgcccgga aaggttttga ttgacaagaa gcacgcacgt aagtcgcccg
     3001 acgagatcct gcgcgaacgc gcgaaggacg acagccaggg actgtttgga ttcttgaaga
     3061 cggttaataa gaaatggact gtgacctacg acgagaacga cgacgcggcg aagtatcgtt
     3121 tgaaccacgt tcaggatctc gcgtggggcg ctgctgacga tcgctccaag aactggcgcg
     3181 agatcgatcc gcggcgcgtc gagggaccga ttccggtcga gtgtcgctct gcatcgtgcg
     3241 gcacgtgttg ggttggcgtc ctcggcggcg ccgagaaact ttcagacgtc gcggcgcgtg
     3301 aaggaaagaa gatcaaggag ttcggctaca tagacacgac ggaatcaaaa cccctcatcc
     3361 gcctcgcctg ccaggcccaa gcccacggcg cagtctccat cgtcatccca ccctggaacg
     3421 gcgtcttcgg caaatacctg aaagctcaaa agcaggagtc ttagtaacgc cgaaggcgtt
     3481 cgcatttaac gccgcggtgt tcgcagtaaa cgccgaaggc gttcgccaac ttcagcccag
     3541 aggttggagc ttgcgacaac cctgggggtt aagaacaaaa gaaagaagcc aacgctgaaa
     3601 gcgttgacaa gcggggtggc tagccaacgc cttcagcgtt gcaaacataa atcgtacgag
     3661 tccccagggt tgaagcaacc ccgggctgaa attagaaaac gccttcggcg ttcttgactc
     3721 agtaaacgct tcagcgttct taaatgactc aacaaacgcg ttcggcgttc tcgataactc
     3781 agtcaggtcg caaagctagt ggcgcgcatg cgcggcctct gttgtttgtg ctcgctgctg
     3841 ctttgttgtg gagtagtggg gggcttttta ttaagtggac cagcctgagt gggctggagc
     3901 tgtcgttttg caggtcgttt tttgccgcga ttacggttgc gattgttacc cggcatgagg
     3961 ggttcgggtt gaatcgggtg acggggtttg cctccgtgct ttatgcggtg ttgctgatcc
     4021 tgtttgtcct cgcaacgaaa gagaccaccg cggcgaatgc gatttttctt cagtacactg
     4081 ccccggttta tctcctcatc ctcgaacccc tgatctacaa agagaagttt cgtctgcgcg
     4141 atctcgtaac ggttttggtg tgcgtcgggg gaatggcgct gttctttgtg ggccaactgc
     4201 ggccgcagga cgtcaccggc aatttattcg cgctcgcttc gggcttgtgc tttgcattct
     4261 attttctttc actgcgccat ccgagagcgc gtgaggtgaa ccgcgcgtca tcggtgatct
     4321 acggcaacat cctcgcggtc atcctcaccg caccgtgggg actcgcggcc attccaaacc
     4381 tcactcttca cgacacgctc agcgtggtct acctcggcgt cgttcaactc ggcatcgctt
     4441 acgcgttgtt taccgtggcg atggcgcgcg gcgtgaggtc gttggacgcg ggaatcatct
     4501 gctacgtcga accggtattg aatccggtgt gggtctttct cgtgctcggc gaacggcctt
     4561 cgcgctgggc gctgttgggt ggcgccatca tcgtcaccgc cgtgatcgtt cacatgctgc
     4621 tcgacgcgcg gctaaaaaag gcggctaaag cagccattta ggacggctgt cgtagtaact
     4681 cggcgagcgg tcgggataac gcttcttgta cctgtgataa cgcgcgagca gtttctcgta
     4741 gcgcgcgtct gaagagcgaa tcttgcgatg cggaatggcg cgcaagtggt cctcgatctt
     4801 gcgcatgcgg cgcggcgaaa aacgccagtc gtaatcgcca agctcgtaaa gactcgtcac
     4861 cgcataaccc ttcagccgtc cggaaaaatc aacaaacggg tcgaaataac tccacgccag
     4921 atcgcgcacc gatcggtaaa ccggcttgcg cccgtgaagt gcgatatcgc gcgaacgccc
     4981 gatcgctccc caaccaccgc tccccttaaa aacaaaaagc acgtggtcca acaggtcctg
     5041 cgactcgaga tccaacaaca gcggcgggta cccgtgttgc tcgagtatca ccgccgcagc
     5101 caccgcagtc tccaaacagt gggcctcttt gtgtttgatc aattcgcgga acgatcgcag
     5161 ggtcggccca tttttctccc aattgtacgg taacgaactg aagtaccgtt gtactctaga
     5221 gggggtgttc agccgttgaa tgagcctcca ctcagccgtg gtaaatccat tttgagatac
     5281 tttgttcatg gatctgacaa aagcctgaag ccccacttgc ctgaatcact cgcaaaatgt
     5341 cagacttaca cgtcgctaga gtttatagcg cgattaataa atcttttttg aaatgacttc
     5401 ccaaatgaac cagcaggccg cagcttcaca aaaatcccgc gcagaacaag aaaccgaaac
     5461 tgaagcaaac cgcttgcgag agcaagtcga ggcagcattg tccatcgttg cccaacgctc
     5521 tccagacgag tttgacgcgt tgcagaccgc cgcagatcgt atcgaacgtg ccgcacgcga
     5581 tctttctgac gcactgcgcg agttggccca acaacgcagg gccaccgacg aatcttagta
     5641 caactttagc tgtagacggt tcaaaagtat tccccgtctg tttactggag accaacttaa
     5701 tgacttcaat gcgcactgaa cgaatccccg aacacttcgg ccgtaagaat acttccgtcg
     5761 agttggacgc gtacggcatt aaagagcccg cgcgcgtcta ctggaatctc agcacaccgg
     5821 aactctacga agagatcgca cgccgccgcg aaggtgttct ttcaaaccac ggcgtaatac
     5881 ttgtcgacac a
//
LOCUS       DASWTX010001081         2815 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_170518, whole genome shotgun sequence.
ACCESSION   DASWTX010001081 DASWTX010000000
VERSION     DASWTX010001081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2815)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2815)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2815
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170518"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1497
                     /locus_tag="VGD38_16505"
     CDS             <1..1497
                     /locus_tag="VGD38_16505"
                     /inference="COORDINATES: protein motif:HMM:NF014896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY0729685.1"
                     /translation="NRYDEPKADALRATNYFQKVYYHKLGTPQAEDVLVYERPDQKDW
                     LFGASVTEDGNYLIVTIYQGTDVKNRVYFKDLKAKDAPVVKLLDDFDAAYTFVGNEGS
                     RFWFQTDERAPRGKVIEIDVKEPVRENWKIVVPEAKETLQATTFVNHKFVLNYLKDAY
                     TQVKIYDTSGKFVNDIAFPGIGTADGFGGKATDKETFYAFTGFTTPTTIYRYDFATGK
                     STVFRQPKVEFNPGDFETKQVFYTSKDGTKVPMFITHKKGLKLDGNNPTYLYGYGGFN
                     ISLSPGFSVGNLVWMEMGGVYAQANLRGGGEYGEEWHQAGMKLKKQNVFDDFIAAAEW
                     LIANKYTSTPKLAIGGGSNGGLLVGAAITQRPDLFGAAIPAVGVMDMLRFQKFTIGWA
                     WVSDYGSSDNADDFQALFAYSPLHNIKPGTSYPPTMITTADHDDRVWPGHSFKFAAAL
                     QEAQKGDAPVLIRIETKAGHGAGKPTTKVIEEIADRWAFLVRTLNMKS"
     gene            complement(1505..2497)
                     /locus_tag="VGD38_16510"
     CDS             complement(1505..2497)
                     /locus_tag="VGD38_16510"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY0729686.1"
                     /translation="MQYRKFGRTGWEVSEIGYGMWGMASWSDSSDDESLSSLQASVDL
                     GCNFFDTAYAYGNGRSENLLGQIVRSNPEKRLYTATKIPPKSLKWPAPPESNLMESFP
                     PDHVEEYVHRSLENAKLDQFDLMQFHTWNDEWMRDDRWFYKLDDLRSQKLIRAIGISI
                     NRWEPWNGVRAVRSGQVDAVQVIYNIFDQNPEDELFPACREMDVAVIARVPFDEGTLT
                     GTLTKDSTWPEGDWRNTYFVPENLIPSVERADAIKKLLEEWNHEHETHITMPELALRF
                     ILANEDVSTIIPGMRKLSHVKANIEASDAGPLPKELHEKLKGFRWVRKPTPWSQ"
     gene            complement(2597..>2815)
                     /locus_tag="VGD38_16515"
     CDS             complement(2597..>2815)
                     /locus_tag="VGD38_16515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729687.1"
                     /translation="FDDETNQLSILKNGKVVAQAMARIESRAKKANDFQLRSTNKDNE
                     QQLTGVTFGGSDKDIVITEGAASTTGSN"
BASE COUNT          632 a          798 c          777 g          608 t
ORIGIN      
        1 aaccgctacg acgaacccaa agcggacgcc ctcagagcaa cgaactattt tcaaaaagtc
       61 tattaccaca aactcggcac gccgcaggct gaagacgtgc tcgtttacga gcgtccggat
      121 cagaaagact ggctgttcgg cgcttcagtg accgaagacg gcaactacct gatcgtcacg
      181 atctaccagg gtactgacgt caagaaccgc gtctacttca aagatctcaa agcgaaagac
      241 gcgccggtcg tgaaactgct cgacgacttc gacgcggcct acacctttgt cggcaacgaa
      301 ggctcgcgct tctggttcca gactgacgaa cgtgcgccac gcggcaaagt gattgagatc
      361 gacgtgaaag agccggttcg cgagaactgg aaaatcgtcg ttcccgaagc gaaagaaacg
      421 cttcaggcga ccacgttcgt caatcacaag tttgtcctca actatctcaa agacgcttac
      481 acgcaggtga agatttacga cacgtcgggc aagttcgtga acgacatcgc gttccccggc
      541 atcggcaccg ctgacggctt cggcggcaaa gccaccgaca aagagacgtt ctacgccttc
      601 accggcttca cgacgccgac gacgatctat cgttacgact tcgccaccgg caagagcact
      661 gtctttcgcc aacccaaagt cgagttcaat ccgggcgact tcgaaaccaa gcaggtcttt
      721 tacacgagca aggacggcac gaaagtgccg atgttcatca ctcacaagaa aggcttgaag
      781 ctcgacggca acaacccgac ttatctctat ggctacggcg gcttcaacat ctcgctttcg
      841 cccgggtttt cagtcggaaa cctcgtgtgg atggaaatgg gcggcgtcta cgcacaggca
      901 aacctgcgcg gcggtggcga gtacggcgaa gagtggcacc aggccggcat gaagctcaaa
      961 aagcagaacg tgtttgacga cttcatcgcg gcggccgagt ggttgatcgc gaacaagtac
     1021 acgtcaacac cgaagctcgc gatcggcggc ggcagcaacg gcggactgct cgtcggcgcg
     1081 gcaatcacgc agcgtccgga tctgttcggc gcggcgatcc ccgcggtcgg cgtgatggac
     1141 atgctgcggt ttcagaagtt cacgatcggt tgggcgtggg tttcggatta cggttcgtcg
     1201 gacaatgcgg acgacttcca agcgttgttc gcgtattcac cgctgcacaa tatcaagccg
     1261 ggaacttcgt atccgccgac gatgatcacg accgcggacc acgacgatcg tgtttggccg
     1321 ggacacagct tcaagtttgc cgcagcgctg caagaggcgc agaaaggcga tgctccggtc
     1381 ttgattcgca tcgagacgaa agccggacac ggcgccggaa aaccgaccac gaaggtcatc
     1441 gaagagatag ccgaccggtg ggcattcctg gtgagaacac tgaatatgaa aagctagtcg
     1501 cgtctcactg agaccagggc gtgggctttc gcacccagcg gaagcccttt agcttttcat
     1561 gcaactcctt cggcaatgga ccagcatcac tcgcctcgat gttggcttta acgtgcgaca
     1621 gctttcgcat tcccggaata atcgtactca cgtcttcgtt cgccaggatg aatcgcagcg
     1681 cgagctccgg catcgtgatg tgcgtttcgt gttcgtggtt ccattcttcg agcagtttct
     1741 tgatagcgtc tgcacgttcc acactcggaa ttaaattctc gggaacgaag taagtgttgc
     1801 gccagtcgcc ttcgggccac gtgctgtctt tcgtcaacgt gcccgtcaac gtcccctcat
     1861 caaacggcac gcgcgcgatc acggcgacgt ccatctcgcg gcaagcaggg aagagctcgt
     1921 cttccgggtt ctgatcgaag atgttgtaga tcacctgcac tgcgtcgact tgtccgctgc
     1981 gcaccgcgcg cacaccgttc cacggttccc aacgattgat actgataccg atcgcgcgga
     2041 tcagtttctg actgcgcaga tcgtcgagtt tgtagaacca gcgatcgtcg cgcatccatt
     2101 cgtcattcca cgtgtgaaac tgcatcaggt cgaattgatc gagcttcgcg ttttcgagac
     2161 tgcgatgcac gtactcttcg acgtggtccg gcggaaacga ctccatcaaa ttcgattccg
     2221 gcggcgcggg ccatttcagt gattttggtg gaatcttggt ggcggtgtag agacgttttt
     2281 cgggattcga tctgacaatc tggcccaaca aattttcgct gcggccgttt ccataagcat
     2341 aagccgtgtc gaaaaaattg cagccgagat caactgaggc ttgcagcgag cttagcgatt
     2401 cgtcgtcgct cgagtcggac caactggcca tgccccacat gccatagcca atttcactaa
     2461 cttcccatcc ggtgcgtcca aattttctgt attgcatgca ctcatactag agatcggctg
     2521 cactaaaaac aactacgcct ccaagccgaa gcttagaggc gcaggagggg ttgtatcgtt
     2581 agggggaaaa ctcttcttag ttgctgcccg tggttgacgc ggcgccctcg gtgatgacga
     2641 tgtctttgtc agaaccgccg aaggtgacgc cagtcagttg ctgctcgttg tccttgttgg
     2701 ttgagcgcag ttggaaatcg ttggctttct tggcgcgcga ctcgatgcgg gccatggcct
     2761 gggcaacgac tttaccattc ttcaagatcg aaagttgatt ggtctcgtcg tcaaa
//
LOCUS       DASWTX010001082         3263 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_274722, whole genome shotgun sequence.
ACCESSION   DASWTX010001082 DASWTX010000000
VERSION     DASWTX010001082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3263
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274722"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..209
                     /locus_tag="VGD38_16520"
     CDS             <1..209
                     /locus_tag="VGD38_16520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729688.1"
                     /translation="DNFALLVEHVVTEDERLDNIAARYMDDPEAFWRIADANSAMRPE
                     ELTETVGRKLRITLPEGIPGVPNA"
     gene            202..1332
                     /locus_tag="VGD38_16525"
     CDS             202..1332
                     /locus_tag="VGD38_16525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729689.1"
                     /translation="MLKGVHLTLMIGPAVPVPAPQSVMDALTSVQVTASKEQSGFQLT
                     FAVSKESPLMKIMLPAGYFDPIITRVCIIVTVNGTPNVIMDGMITRQELTPSNDPGQS
                     TLTITGEDLSILMDLLEMPFMRYPAMPEVARLYVMLSKYLVFGIVPIVIPPIPPDIPI
                     PTNDIPSHLEGSDRAYIQRLAREAGYVFYIDPGPLPLQSIAYFGPDIRIPVPQPALNI
                     NMDAHTNVESMTFSLDGLAKKIFVYHIMDPATHKVPIPIPVPNLSVLRPPMGARIAAP
                     SKVEFVKQGANRSTSKAIQEILGMTFSASDSINVSGTLDVVRYGRPLKSRMMVGVRGA
                     GIAYDGLYYVNSVTHNIKRGEYKQNFQLSRDGLVSLTPKVPV"
     gene            1329..1859
                     /locus_tag="VGD38_16530"
     CDS             1329..1859
                     /locus_tag="VGD38_16530"
                     /inference="COORDINATES: protein motif:HMM:NF016595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HEY0729690.1"
                     /translation="MTDSQRFYGKYRGTVVQNADPEFRGRIMCVVPDVLGLVPSNWCE
                     ACTPLAGPTGPPMGVYMVPPIGAGVWVEFEHGDPGKPIFAGCRFAPSNVPPLALAGNP
                     LDPNICIQSLLQHMIMISDMPPSPVTGGIILKSTTGAMIVVNDSGIYLSNGKGAVITM
                     VGPSIDFNLGALTIVK"
     gene            1869..2240
                     /locus_tag="VGD38_16535"
     CDS             1869..2240
                     /locus_tag="VGD38_16535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729691.1"
                     /translation="MPGLLMHVNAVMSCIHQAGTAVIPPTQPRVLVSGQPIATISPPP
                     VPLATVAGCPFTVPTPGGPKPQPCVTIKWLMPSTRFLVNGLPAALLPTPGPGPGICQS
                     VEQIPQGPPTVKAVQMRVIGS"
     gene            2245..2601
                     /locus_tag="VGD38_16540"
     CDS             2245..2601
                     /locus_tag="VGD38_16540"
                     /inference="COORDINATES: protein motif:HMM:NF016829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HEY0729692.1"
                     /translation="MNINFPFKFDGRGQTASCNESEHIRQMLEQLIFTSPGERVNRPT
                     FGSGVLQLIFAPNSPEVAATLQFTMQAAVQQWLGDVIQLQNLEVTSTDSTLTVDLSYS
                     IRRTNEQQSLTLTRAI"
     gene            2614..>3263
                     /locus_tag="VGD38_16545"
     CDS             2614..>3263
                     /locus_tag="VGD38_16545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729693.1"
                     /translation="MSLCCQQDDRREEVRRVDYLNGLDYVEVLDDQVTLHAYFLGKLP
                     PELQVNQPGLENYFEIEGGQRITDIAIVDVDPFVDPDPERDDFVVIRLDKYGDFSHYT
                     LRLKDVENVDPRYDRAKFNFKVNCPSDLDCAPACDCEPPVLVEPDINYLAKDYQSFRQ
                     LILDRLAVLMPDWTERHVPDIGVMLTEILAYTGDYLSYYQDAVATEAYLDTARQRIS"
BASE COUNT          714 a          948 c          911 g          690 t
ORIGIN      
        1 ccgacaactt cgcgcttctg gtggaacacg tagtgaccga agacgagcgg ctcgacaaca
       61 tcgccgcgag atacatggac gatccggaag cgttttggcg catcgccgat gcgaattccg
      121 cgatgcgtcc cgaagagttg actgaaacag tcgggcgcaa gctgcgcatc actttacctg
      181 aaggaattcc cggagtcccg aatgcttaaa ggtgttcacc tgacgttgat gattggacca
      241 gcggtgcccg tcccagcgcc gcagtccgtc atggacgcgc tgacaagcgt gcaggtgaca
      301 gcctcgaaag aacaaagcgg ttttcaattg acgtttgcgg tgagcaaaga gtcgccgctg
      361 atgaagatca tgctgccggc cggttacttc gatccgatca tcacgcgagt gtgcatcatc
      421 gtgaccgtca acggcacacc caacgtgatc atggacggaa tgatcacgcg ccaggagctc
      481 acgcccagca acgatcccgg gcaatcgaca ctgacgatca cgggcgaaga cctgagcatc
      541 ctgatggacc tgctcgaaat gcccttcatg cgttatccgg cgatgcctga agtcgcgcgg
      601 ctttacgtca tgctctcgaa gtatctcgtc ttcggcatcg tcccgatcgt cattcctccg
      661 attccgccgg acattccgat tccgacaaac gatattccgt cgcatctcga aggctccgat
      721 cgagcttaca ttcagcgtct cgcgcgtgaa gccggttacg tcttttatat cgatcccgga
      781 ccactgccgc tccagagcat tgcttacttt ggaccggaca tccgcatccc cgtgccgcag
      841 ccggcgttga acatcaacat ggacgcgcac acaaacgtcg aatcgatgac cttcagtctc
      901 gacggtctcg cgaagaagat ttttgtctac cacatcatgg atcccgccac tcacaaagta
      961 ccgattccga tccccgtccc gaacctgagc gtgctgcgcc cgccgatggg tgcgcgcatc
     1021 gcggcgcctt cgaaagtgga gttcgtcaaa cagggcgcga atcgaagtac gagtaaagcg
     1081 atccaggaaa ttttgggaat gacttttagt gcgtctgatt cgatcaacgt ttcgggaacg
     1141 cttgacgtgg ttcgttatgg ccgcccgctg aagtcgcgaa tgatggtcgg cgtgcgcggc
     1201 gcgggcatcg cttacgacgg gctttattac gtgaacagtg tgactcacaa catcaagcgc
     1261 ggcgagtaca aacaaaactt tcagctcagt cgtgatggac tggtctcgct tacgccaaag
     1321 gtaccggtat gacggactcg caacggtttt acggaaagta tcgcggcacg gtcgtgcaga
     1381 acgccgatcc cgaatttcgc gggcgcatca tgtgcgtcgt gcccgacgtg ctcgggctcg
     1441 ttccttcgaa ctggtgtgaa gcgtgtacgc cgctggctgg cccaactggt ccaccgatgg
     1501 gtgtttacat ggtgccgcca atcggcgccg gcgtttgggt tgaattcgag cacggcgatc
     1561 cgggaaaacc gatcttcgcg ggttgccgct ttgctccgag taacgtgccg cctttggccc
     1621 tcgcgggaaa tccgttggac ccaaacatct gcattcagtc gctgttgcag cacatgatca
     1681 tgatcagcga catgccgccg tcgccggtca cgggcggaat cattttgaag agcacgaccg
     1741 gcgcgatgat cgtggtcaac gactccggta tctatctttc gaacggcaag ggcgcagtca
     1801 taacgatggt cggcccttcc atcgacttca acctgggcgc attgacgata gtgaaatagg
     1861 aggtcttcat gcccggtcta ttaatgcacg ttaacgctgt catgtcctgc attcatcagg
     1921 caggcacggc cgttattcca ccgacgcaac cacgcgtgct cgtcagcggc caaccgatcg
     1981 cgacgatctc gccgccgccg gtgccgctcg ccacagtcgc cggttgcccg tttacggttc
     2041 cgactcccgg aggtccgaaa ccgcaaccat gcgtgacgat caaatggctg atgccttcga
     2101 cgcgattcct cgtgaacgga ctgcccgcag cgttactacc aacgcccggt cctggaccag
     2161 gcatttgtca aagcgtcgaa cagattccgc aaggaccacc gacagtcaaa gcggtgcaaa
     2221 tgcgcgtgat tggaagttga agagatgaac atcaatttcc catttaagtt tgacggccgc
     2281 gggcaaaccg cttcgtgtaa cgagagcgag cacatccggc agatgctgga gcagctcatc
     2341 tttaccagcc ccggcgaaag agttaatcgc ccaacgttcg gcagcggcgt gctgcaattg
     2401 atattcgcgc caaacagtcc ggaggtcgct gcgactctgc aattcacgat gcaagccgca
     2461 gttcagcaat ggcttggtga cgtcatccaa ctgcaaaacc tcgaggtgac cagcaccgac
     2521 tccacgctga ctgtagatct cagttactcg atccggcgca caaacgaaca gcaaagcctg
     2581 actctgacgc gggctatctg acgaggagga acggtgagtc tttgttgcca acaggatgat
     2641 cgtcgcgaag aagtgagacg cgtggactac ctgaacggcc tcgactacgt cgaggtcctc
     2701 gacgatcagg taaccctgca tgcgtacttt ctcggcaagc tgccgcctga gttgcaggtc
     2761 aatcaacccg gtctggaaaa ctacttcgag atcgagggcg gacaacgaat cacagacatc
     2821 gcgatcgtgg acgtagatcc gtttgtcgat cccgatccgg agcgtgatga cttcgtagtc
     2881 atcaggctgg acaagtacgg agatttttcg cactacacgt tgcgcctgaa ggacgtcgag
     2941 aatgtcgatc cgcgttacga tcgcgcgaag tttaatttca aggttaactg tccttcggat
     3001 ctcgattgcg cgccggcgtg cgattgcgag ccgccggttt tagtcgagcc ggacatcaac
     3061 tatctcgcga aggattatca aagcttccgg cagttgattc tcgatcggct ggcagtcctg
     3121 atgcctgact ggaccgagcg tcacgtgccc gacatcggcg tgatgctgac ggagattctc
     3181 gcgtacacgg gtgattacct tagttattac caggacgcag ttgcgactga agcctatctc
     3241 gacaccgcgc ggcaacgcat ttc
//
LOCUS       DASWTX010001083         3514 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_58923, whole genome shotgun sequence.
ACCESSION   DASWTX010001083 DASWTX010000000
VERSION     DASWTX010001083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3514
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58923"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..458
                     /locus_tag="VGD38_16550"
     CDS             <1..458
                     /locus_tag="VGD38_16550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729694.1"
                     /translation="LMGLGTGTAIGAFMINASKRDTTDAQLSTLRPQEAKLTAEASQT
                     NDPVLLAEKRAQLVELRKQIADAESGLSKPESEGFKNDILTDANGIALHRFQMAAWTL
                     ALGLIFIIGVYRNLAMPQFSVTLLALMGISTLTYLGFKIPERQDDQKQP"
     gene            573..2258
                     /gene="bshC"
                     /locus_tag="VGD38_16555"
     CDS             573..2258
                     /gene="bshC"
                     /locus_tag="VGD38_16555"
                     /inference="COORDINATES: protein motif:HMM:NF021586.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0071793 - bacillithiol biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol biosynthesis cysteine-adding enzyme
                     BshC"
                     /protein_id="HEY0729695.1"
                     /translation="MSTVEPACYSTPEESGLRVETLSFERVPHMTRLFLDYLNDPVAL
                     RRFYPSAVRLHTELQPRIPEVLAAQQVDRNKLADALAAMNARWGAGQETLDNINLLRE
                     SDSIAVVSGQQAGLFTGPLYTIYKALSAVKLAGCLRQRGTKAVPVFWIAAEDHDFAEV
                     ALAEFIGRDCRLKQVNVKTDLHREAQPVGHVVLDESITEVIDQLFELSPASEFAADMK
                     TLVQNAWKPGRTYADAFATMMTSLIGSYGLIFLDPLDKELKQLAAPLYAAAAERAPEI
                     GTALEQRSRELEAAGYHAQVLATANSFPLFLHDETGARHALVRGDNGKYRTKENENEY
                     TAAELAAMARETPERFSPNVTLRAVVQDYLLPTIAYYGGAAEIAYFAQTAEVYRLLER
                     PATPILPRSSLTMIERHTGRTLERYGLKLADFFEGMEPVIKRVVEEYLGAGTAKRFGA
                     TEEKINEELDRLRDELKSVDPTLASALDTGRKKINYQLEGLRTRFVRAQMARDEAAHR
                     QLQRAFDQIYPHKDLQERHINITSLLSRHGTYVIEWIFNAINLGSNDHQIVYL"
     gene            2264..>3514
                     /gene="mutL"
                     /locus_tag="VGD38_16560"
     CDS             2264..>3514
                     /gene="mutL"
                     /locus_tag="VGD38_16560"
                     /inference="COORDINATES: protein motif:HMM:TIGR00585.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HEY0729696.1"
                     /translation="MSKIRVLADHVANQIAAGEVVERPSSVAKELVENSIDAGATRIT
                     IEIEAGGRRLLKVSDDGEGMVRDDAILAFERHATSKIRIADDLIAIGTLGFRGEALAS
                     IASVAKVELITNTEDAAAGTRVAIEGGKMRDVKDAAHPRGTTIAMRDLFFNVPARRKF
                     LKSEATETFHLTNLVTHYALAHPEIAFTLVNNGRDVIRAVAAKDLRERAYQIFGADFL
                     ENLLAVEGGDAQLARVTGFVSAPRDRRTTRDAQYFFVNRRYVRDRMIGRALTEGYRSI
                     LPQGFYPAALLFVETPLEEVDVNVHPAKTEVRFRRTAAVADVVREAIREALARNDYEP
                     QITQIPQTQIPQIQTASAAVSFPPPQPRMEFAPPPPPTTATVIPFPSGDEIARDIEEM
                     VRTASVKMPPVNNAEKLVSHVSPET"
BASE COUNT          748 a         1074 c         1032 g          660 t
ORIGIN      
        1 tcctgatggg actcggcacc ggcacagcca tcggcgcgtt catgatcaat gcctcgaagc
       61 gcgatacgac cgatgctcag ctcagcactc tgcggccaca ggaggcgaag cttacggctg
      121 aagcctcaca gactaatgac ccggtgctgc ttgcggagaa gagagcgcaa ctcgtcgagc
      181 tgcgcaagca gatcgctgat gcagaatccg gattgtccaa gcctgaatca gaaggattca
      241 agaacgatat cctgaccgat gcgaacggta tcgcgctgca ccggttccaa atggccgcct
      301 ggactttagc gctcggtctg atcttcatta tcggcgtcta ccgaaacctg gccatgcctc
      361 aattcagcgt gacgctgctg gctttgatgg gcatcagtac cctcacctat ctcggcttta
      421 agattccgga gcggcaggac gaccagaagc agccgtaaag gcgaattgcc acgggtggga
      481 gtgacctcaa cgagatattg ggagccgctt gtagctccgc tggtacatcg tccgcatact
      541 gcgtagaatg tcgcgcggga gcctttaatc tcttgagcac agtcgaacct gcctgttaca
      601 gcacccctga agagtcggga cttcgcgttg agactctttc attcgaacgc gttcctcata
      661 tgacgcgtct gtttctggac tatctgaacg atccggtggc gttgcggcgg ttctatccgt
      721 ctgcggtgcg tctacacacg gagttgcagc cgcgcatccc tgaagtgctc gcggcgcaac
      781 aggtcgatcg aaacaagctc gccgatgcac tcgcggcgat gaacgcgcgt tggggcgcgg
      841 ggcaggaaac gttggacaac atcaacctgc tgcgcgagtc agacagcatc gccgtcgtct
      901 cgggccaaca ggccggtctg ttcactgggc cgctgtacac gatttacaaa gcgctttcgg
      961 cagtgaaact cgcgggctgt ttgcggcagc gcggaacgaa agccgtgccc gtgttctgga
     1021 tcgccgctga ggatcacgac tttgccgagg tcgcgctggc ggaattcatc ggacgcgatt
     1081 gccggctcaa gcaagtgaac gtgaagaccg atctgcaccg cgaagcacag ccggtcggtc
     1141 acgttgtttt agacgaatcg atcaccgaag ttatcgatca gcttttcgag ctctcgcccg
     1201 cttcggaatt cgccgccgac atgaagacgc tcgtgcagaa cgcgtggaag cccggccgca
     1261 cgtacgccga cgctttcgcg acgatgatga cgtcgctaat cggcagctac ggtttgatct
     1321 ttctcgatcc gctcgacaag gaactcaagc aactcgccgc gccgctttac gccgcggcag
     1381 ccgaacgcgc gcccgagatc ggcacggctc tcgaacaacg cagccgcgag ctcgaggccg
     1441 ccggctatca cgcacaggtg ctcgccaccg caaactcgtt tccgctgttt ctccacgacg
     1501 agaccggcgc gagacacgcg ctcgtgcgcg gcgacaacgg caagtaccgc acgaaagaga
     1561 acgaaaacga atacaccgcc gcggagctcg ccgcgatggc gcgcgaaact cccgaacgtt
     1621 ttagtccaaa cgtaacgctg cgcgcggtgg tccaggatta cctgttaccg acaatcgctt
     1681 actacggcgg cgccgccgag atcgcttact tcgcacagac cgccgaagtc tatcgcctgc
     1741 tcgaacgccc ggcgacgccg atcctgccgc gttcgagtct gacgatgatc gaacgccaca
     1801 ccggccgcac gctcgaaaga tacggactca agctcgccga ctttttcgaa ggcatggaac
     1861 ccgtcatcaa gcgcgtcgtc gaagagtatc tcggcgcggg cacggccaaa cgcttcggcg
     1921 ccacggaaga gaagatcaac gaagaactcg atcgcctgcg cgacgagctg aagtcagtcg
     1981 atccgacact cgcgagcgcg ctcgataccg gacgcaagaa gatcaactac cagctcgaag
     2041 ggctgcgcac gcgcttcgtg cgcgcgcaaa tggcccgcga cgaagccgcc caccggcagt
     2101 tgcaacgcgc tttcgatcag atctatccgc acaaagactt gcaggaacga cacatcaaca
     2161 tcacgtcgct gctgtcgcgc cacggcacgt acgtgatcga gtggatcttc aacgccatca
     2221 atctcggctc aaacgaccat caaatagttt acctgtaaaa tccgtgtcca aaattcgcgt
     2281 cctcgcagat cacgtcgcca atcaaatcgc cgcgggcgaa gtcgttgagc ggccctcttc
     2341 agttgccaaa gaactcgtcg agaattcgat cgacgcgggc gccacgcgca tcacgatcga
     2401 gatcgaagcc ggcggccgcc gcctgttgaa agtgtccgac gacggcgaag gcatggtgcg
     2461 cgacgatgcg attctcgctt tcgaacgtca tgcgacgtcg aagattcgca tcgctgacga
     2521 tctgatcgcg atcggcacgc tcggttttcg tggtgaagca ctcgcgtcga tcgcatcggt
     2581 cgcgaaggtt gaactgatca ccaacactga agacgcagcg gccggaacgc gtgtcgccat
     2641 cgaaggcggc aagatgcgcg acgtgaaaga cgcggcgcat ccacgcggca cgacgatcgc
     2701 catgcgcgac ctgtttttca acgtgccggc gcggcgcaag tttttgaaat ctgaagcgac
     2761 cgagacgttt cacctgacga acctggtgac gcactacgcg ctcgcgcatc cggagattgc
     2821 gtttacgctt gtgaacaacg ggcgcgacgt gattcgcgcg gtggcggcga aagatctgcg
     2881 cgaacgtgcg taccagatct tcggtgcgga ttttctggag aacttgttgg cggttgaagg
     2941 cggcgatgcg cagttggcgc gggtgacggg ttttgtttcg gcgccgcgcg accggcgcac
     3001 gacgcgtgat gcgcagtact tttttgtgaa ccgccgttat gttcgcgacc ggatgatcgg
     3061 gcgcgcgttg acggaaggtt atcgctcgat cctgccgcag ggcttttatc ccgcggcgtt
     3121 gttattcgtc gagacgccgt tggaagaggt tgacgtgaac gtgcatccgg cgaaaacgga
     3181 agtgcgcttc cggcgcacgg cggccgttgc ggacgtggtt cgtgaagcca ttcgcgaagc
     3241 actggctcgc aacgactacg aaccacagat tacacagatc ccgcagacac agattccaca
     3301 gattcagact gccagcgcgg cggtttcgtt tcctcctcct caaccacgta tggagttcgc
     3361 tccaccaccg ccgcccacaa ccgcgaccgt gatcccgttc ccttccggag atgagatcgc
     3421 gcgagacatc gaggagatgg tgcgtactgc ttcggtaaaa atgcctcccg tcaacaacgc
     3481 cgaaaagtta gtgagccacg tctcccccga gacg
//
LOCUS       DASWTX010001084         3065 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_186375, whole genome shotgun sequence.
ACCESSION   DASWTX010001084 DASWTX010000000
VERSION     DASWTX010001084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3065
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186375"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..396)
                     /gene="pyrH"
                     /locus_tag="VGD38_16565"
     CDS             complement(<1..396)
                     /gene="pyrH"
                     /locus_tag="VGD38_16565"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: protein motif:HMM:NF012899.4"
                     /note="Catalyzes the phosphorylation of UMP to UDP;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEY0729697.1"
                     /translation="MNKDGSNLVYRRVLLKISGEALMGEQNYGIDVNVARSVAEELKA
                     VYQLGVQVAVVVGGGNIFRGVSKSAGNMDRAAADYIGMLATVMNGVVLQDALEKIDVD
                     TRVLSAIDIPQLAEPFIRRRAVRHLEKGRV"
     gene            complement(393..1055)
                     /gene="tsf"
                     /locus_tag="VGD38_16570"
     CDS             complement(393..1055)
                     /gene="tsf"
                     /locus_tag="VGD38_16570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011555308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HEY0729698.1"
                     /translation="MADITAAAVKQLREKTGAGMMECKNALVESGGNEEKAIDILRER
                     GLASAKKREGRIAAEGIVGSYIHMGGKVGVLVELNCETDFVARGEEFQTLVKDIAMHV
                     AAAEPRYVSREEVPADVLEKEREIARAQAKNDPKMAGKPEQVIEKIVDGRINKFYEET
                     VLNDQPFVKDPSKTVAELVTEKVAKTGERISIRRFTRYKMGEGLERRADDFGSEVASM
                     LG"
     gene            complement(1159..2043)
                     /gene="rpsB"
                     /locus_tag="VGD38_16575"
     CDS             complement(1159..2043)
                     /gene="rpsB"
                     /locus_tag="VGD38_16575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEY0729699.1"
                     /translation="MKELLEAGVHFGHQVRRWNPKMKEYIFGERNGIYIIDLQKTQRM
                     FREAIGFVTNLIAEDKGRTVLFVGTKRQAQDAIREEAEKCGQYYVNQRWLGGLLTNFQ
                     TVQKSIKRLKDLESMQTDGRYEKLTKKERIKLDRERESLNKNLSGIKMMSRLPDIVFI
                     IDVKKEEIAVAEANRLGIPIVAVVDTNCSPEGIDYVIPGNDDALRAVRLFASRISDAI
                     VEGNQIATEGGVVATEPAEESGEGAGEAAEGGAAEFTPSGEAVNGEEAQSEPTTTATA
                     AEPEAARNESPESVVAAS"
     gene            complement(2174..2566)
                     /gene="rpsI"
                     /locus_tag="VGD38_16580"
     CDS             complement(2174..2566)
                     /gene="rpsI"
                     /locus_tag="VGD38_16580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEY0729700.1"
                     /translation="MAEIQYYGTGRRKSATARVYLRPGAGEVQVNRKPFERYFPNETL
                     RMIIRQPLQLTETTGKFDLVINVAGGGPAGQAGAIRHGITRALLESNPDLRPALKRAG
                     LITRDPRIKERKKYGQKGARKRFQFSKR"
     gene            complement(2595..3050)
                     /gene="rplM"
                     /locus_tag="VGD38_16585"
     CDS             complement(2595..3050)
                     /gene="rplM"
                     /locus_tag="VGD38_16585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019394039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEY0729701.1"
                     /translation="MSTYFPSGKDLAGRRKWYVVDASGQTVGHLASEVASILTGKRNP
                     EWTPFLDLGDHVIVINARKAVLKGNKVEQKLYRHHTLYPGGMRTITAKEMIAKKPERV
                     LELAIKGMLPKTKLGRAMAKKLKVYADAEHPHSAQRPQAFDLTHQANQK"
BASE COUNT          546 a          932 c          827 g          760 t
ORIGIN      
        1 gacgcgtccc ttttcgagat gccgcacggc gcgccggcga atgaacggct ccgccagttg
       61 cggaatgtcg atcgcggaaa gcacgcgcgt atcgacgtcg atcttctcga gcgcgtcctg
      121 gagcacgacg ccgttcatga ccgtcgcgag catgccgatg tagtcggctg ccgcacggtc
      181 catgttgccg gcgctcttcg aaacaccgcg aaagatgttt ccgccgccga ccacgaccgc
      241 cacctgcacg ccgagttgat aaacagcctt cagctcttcg gcgacactgc gggcgacgtt
      301 gacgtcgatg ccgtagttct gctcgcccat caacgcctcg ccggagatct tcaacaagac
      361 ccggcggtag accagatttg agccgtcctt gttcatccca acatcgaagc tacttcgctg
      421 ccgaaatcat cagcgcgccg ttcaagacct tcgcccattt tgtaacgagt gaaacggcga
      481 atcgagattc gctcgccggt cttggcgacc ttttccgtaa ccagttcggc gacagtcttc
      541 gaagggtcct tcacgaacgg ctgatcgttc agcaccgtct cttcatagaa cttgttgatg
      601 cgcccgtcga cgatcttctc gatcacctgt tccggtttgc ccgccatctt cggatcgttc
      661 ttcgcctgcg cgcgcgcgat ctcgcgttct ttctcgagca cgtccgcggg aacttcctcg
      721 cgcgaaacgt aacgcggctc ggctgccgcg acgtgcatcg cgatgtcttt caccaacgtc
      781 tgaaattcct cgccgcgcgc gacgaagtcg gtttcacagt tcagctcgac gagcacgccg
      841 accttgccac ccatgtgaat gtaagaacca acgattcctt ccgcggcaat gcggccctcg
      901 cgcttcttcg ccgaagccaa accacgctcg cgcaggatgt cgatcgcttt ctcttcgttg
      961 ccgcctgatt cgacgagcgc gttcttgcac tccatcatgc ccgctccggt cttctcgcgg
     1021 agctgcttca ctgccgctgc tgtaatgtcc gccatgatta ccaatttctc cgaatactag
     1081 attagttgtc gtcaatgaaa aacgcagccc ggcggatgtc cgcttgaagg ctgcgctcac
     1141 cgatcataag aatatcgttt agctcgccgc cacgactgat tcagggctct cgttccgcgc
     1201 cgcttcaggt tccgcggcgg tcgctgtagt cgtgggttcg gattgcgcct cctcgccgtt
     1261 gacggcctca ccgctgggtg tgaactcggc cgcgccacct tcggcagctt ctcccgcgcc
     1321 ttctcctgac tcttcagccg gttcggtagc gaccacgccg ccttcggtag caatctgatt
     1381 gccttcgacg atggcgtcgg aaatgcgaga ggcaaacaag cgcactgctc gtagggcatc
     1441 gtcgtttccg ggaatcacgt agtcgatccc ttccggggaa cagtttgtat cgacgacggc
     1501 gacgatcgga atgccgagtc gattggcttc cgcgacggcg atctcttcct tcttcacgtc
     1561 gatgatgaaa actatgtcag gcagccgcga catcatcttg atacccgaga ggttcttgtt
     1621 gagactctcg cgctcgcgat cgagtttgat gcgttctttc ttggtcagct tctcgtagcg
     1681 gccgtcggtc tgcatgctct cgagatcctt gagccgcttg atcgacttct gaacggtctg
     1741 gaagtttgtc agcagtccgc ccagccagcg ctggttcacg tagtactggc cgcacttttc
     1801 cgcttcttcg cgaatcgcgt cctgcgcctg gcgtttggtg ccgacgaaca ggacagttct
     1861 gcctttgtct tcagcgatga gattggtcac gaagccgatg gcttcgcgaa acatgcgctg
     1921 cgtcttttgc agatcgatga tgtaaatgcc attgcgctcg ccaaagatgt attccttcat
     1981 ctttgggttc cagcgccgta cctggtggcc gaagtgaaca ccggcctcca gcagctcttt
     2041 catggttacc gaaaccaaac taaagtctcc ttctcgtcaa ttggtttaat gtactcgccg
     2101 cagccgctcg acttgtcttt aagcaaccaa tcgtgctgcg acaatggaat aggacgtata
     2161 cgtcctatag gacctatcgc ttcgaaaact ggaagcgctt gcgtgcgccc ttctgtccgt
     2221 atttctttcg ttccttgatt cgcggatctc gcgtaatcag gccggcgcgt ttgagtgccg
     2281 ggcgcaagtc agggtttgac tcgagcaacg cgcgcgtgat gccgtgacgg atggcgcctg
     2341 cctgtccggc cgggccgccg ccggcgacat tgatcaccag atcaaatttg ccggtggttt
     2401 cggtcaactg caacggttgc cgaatgatca tgcgcaaggt ctcgttcggg aagtagcgct
     2461 caaacggttt gcgatttacc tgcacttcgc cggcgccagg ccgcaagtag actcgggccg
     2521 tcgccgattt gcgccgtccc gttccgtaat actgaatttc agccacagta atctttcctc
     2581 ttatctactg ctttttactt ttggtttgct tggtgagtaa ggtcgaaggc ttgcgggcgt
     2641 tgggctgagt gcgggtgctc ggcgtcggcg taaactttga gtttcttcgc catcgccctg
     2701 ccgagtttag tcttcggcag catgcccttg atggcgagtt cgaggactcg ctcgggcttt
     2761 ttggcaatca tctccttggc cgtaatcgtt ctcataccgc cgggatacaa cgtgtgatgg
     2821 cgatagagtt tttgctcaac cttattaccc ttcaacactg ccttgcgagc gttgatgacg
     2881 atcacgtgat cgccgagatc caggaagggg gtccactccg ggttacgctt gccggtcagt
     2941 atggaagcaa cttcagacgc cagatgccca acggtttggc cgctcgcatc caccacgtac
     3001 cattttcgtc ttccagcgag gtctttaccg ctggggaagt atgtcgacat agttaagtat
     3061 ctctg
//
LOCUS       DASWTX010001085         1620 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_425566, whole genome shotgun sequence.
ACCESSION   DASWTX010001085 DASWTX010000000
VERSION     DASWTX010001085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1620
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_425566"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..615
                     /locus_tag="VGD38_16590"
     CDS             <1..615
                     /locus_tag="VGD38_16590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0729702.1"
                     /translation="EREGESKFKLWTAKAFYRLINRLSETKMPLDAGDFRLIDRKVLD
                     VLRSMPERARFVRGMVSWAGFRQVALPYARAARQAGESKYPLRKMVHFATDGIISFSL
                     VPLKLAIWSGFLAIWIAVAGIIVAIIDRFFETNVVRGWASIFVAVLFMGGVQLVSLGI
                     LGEYLGRIYTEVKRRPLYVVQERLGFPAGNAKEEATSYQVNATR"
     gene            615..>1620
                     /locus_tag="VGD38_16595"
     CDS             615..>1620
                     /locus_tag="VGD38_16595"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEY0729703.1"
                     /translation="MLNRRRLLLLLGAFLLTFCVRGLTLQFMRMHLHDPGWFQVGTYS
                     KFDRQARDILNGKQRLFWIDDPTRTDLTQYPPAFPAAVALIYKFSSQRSAYAVQNVQW
                     IVDMILTFVLITGIAWTAFGWRAGIASSFLVALSPLLAMYGAYPSADAPATWFVLGGC
                     WLLVLAAQRACVWFALGAGVLLGIACWFRVNPLYLFTGWAFVLLLFTKTTWRRRVLVS
                     AAVTLGTVLVIAPLVIRNYLVFPDFTPTGGTIGTNLWEGLGETELGRQHGFHFTDEKL
                     LEYERKKLGLPADFPLDMSWPDGIRRDKERTQEALAFIKQHPLLQARAMLGRMWGMLK
                     V"
BASE COUNT          282 a          454 c          503 g          381 t
ORIGIN      
        1 gaacgcgaag gcgaaagcaa gttcaaactc tggaccgcca aagcgttcta tcgcctgatc
       61 aaccgcctct cggaaacgaa gatgccactc gacgcgggcg acttccgtct catcgatcgc
      121 aaagttctcg acgttttgag atcaatgccc gagcgcgcgc gattcgtgcg cggcatggtg
      181 agctgggcgg gctttcgcca agtagcgttg ccgtatgcac gcgcggcgcg tcaggccggc
      241 gaaagcaagt atccgttaag aaagatggtc cacttcgcga ccgacggcat catctcgttt
      301 tcgctcgtgc cgttgaagct ggcgatctgg agcggctttc tcgcgatctg gatcgccgtc
      361 gccggcatca tcgtcgcgat tatcgatcgc ttcttcgaga cgaatgtagt tcgaggttgg
      421 gcgtcgattt tcgtcgcggt gcttttcatg ggcggcgtgc aactcgtgtc gctcggcatt
      481 ctcggcgagt acctcggccg gatttacacc gaagtgaagc ggcggccgct ttacgtggtc
      541 caggaacggc tcggttttcc cgccggcaac gccaaagaag aagccacctc ctaccaggta
      601 aacgctacga ggtaatgctt aaccgccgtc gattgctcct gctgctgggc gcttttctcc
      661 tcacgttctg cgtacgtggc ctcacgctcc agttcatgcg catgcatcta cacgacccgg
      721 gctggtttca ggtcggcact tactcgaagt tcgatcgcca ggcgcgcgac atactcaacg
      781 gcaagcaacg acttttctgg atcgacgatc cgacgcgaac cgatctcacg cagtatccgc
      841 ccgctttccc ggccgcggtg gcattgattt acaagttcag cagtcagcgc tcggcgtacg
      901 ctgtgcagaa cgtgcagtgg atcgtggaca tgatccttac gtttgtgctg attacgggaa
      961 ttgcgtggac ggcgtttggc tggcgcgccg ggattgcttc gagttttttg gtggcgttgt
     1021 cacctctgct tgcgatgtac ggcgcatatc catccgcgga cgcgccggcg acgtggttcg
     1081 tgcttggcgg ttgctggttg ttggttctgg ctgcgcaacg cgcatgtgtg tggttcgcgc
     1141 tcggcgccgg tgtgttgctg ggcatcgcgt gctggtttcg tgtgaacccg ttgtacttgt
     1201 tcacgggctg ggcgttcgta ctgcttctgt tcacgaaaac aacgtggcgg cgccgcgtgt
     1261 tggtgagcgc ggccgtgacg ttgggaacgg tgctcgtgat cgcgccgctc gttatccgca
     1321 actatctcgt cttccccgat ttcacgccga ccggcggcac catcggcaca aacctgtggg
     1381 aaggactcgg cgaaactgag ttgggccgcc aacacggatt ccattttacg gacgagaaac
     1441 tgctcgagta tgagcggaag aagcttgggc tgccggctga ttttccgctc gatatgagtt
     1501 ggcctgatgg cattcgccgc gacaaggaac ggacccagga agcgcttgcg tttatcaagc
     1561 agcacccact tttgcaggcg cgtgcgatgt tgggacgaat gtggggtatg ttgaaagttg
//
LOCUS       DASWTX010001086         1647 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_346155, whole genome shotgun sequence.
ACCESSION   DASWTX010001086 DASWTX010000000
VERSION     DASWTX010001086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1647
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346155"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(35..406)
                     /locus_tag="VGD38_16600"
     CDS             complement(35..406)
                     /locus_tag="VGD38_16600"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY0729704.1"
                     /translation="MQVITKPESASGAQGTTVVDTEQDVYDDGFLRVEHKNYYAACGG
                     QPIKLPRTEFLIFSRLTRTPDRIVTAEDLWSSVWGSNKPLNSESLHVYIYRLRAKLSD
                     FGLHIETMVNVGYRLLTSKTQ"
     gene            complement(428..>1647)
                     /locus_tag="VGD38_16605"
     CDS             complement(428..>1647)
                     /locus_tag="VGD38_16605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729705.1"
                     /translation="LRTPYVQQWNFGGQYEFTNNLLVEVRYVGSKGTKLLQATSFAQG
                     FDLNDPNTPDFIYERFNRAYVAAGSPLGPLNSGSTARARGLGKAFGFANPTLGGLIDL
                     NLANPAGAVITFEGRSPFLGFDVPEAIMLGNSAYSTYHSAQLSVTKRLSRGLQFNAAY
                     TFSKSIDNASADPGSTAGGGKPDLPNVGFTAQGNAFDTNANRAVSDFDRPHRFSLSFV
                     YDIPSFGSNSKFLTGWRLSGFGQAQSGLPYSIFSPEVTVGTPANYANLRLGSGGLYRL
                     AFGRPSLCGTLDQLQQTGSDPTERAFNPAALCSPLSLAGGYPTNRGFGNLGRNILRGF
                     SQKRLDMGLSKTTRITERVGFELRWDVFNVFNNVNFALPNTVIGEAGTDFGKITDTVG
                     GPRVMQFGMKLKF"
BASE COUNT          352 a          460 c          495 g          340 t
ORIGIN      
        1 acagcagcgg cgggacctcg tttttcttgg gaaattattg ggttttcgat gtcaggagac
       61 gataaccgac attgaccatc gtctcgatgt gtaagccgaa atccgagagc ttggcccgca
      121 aacggtagat gtaaacgtgc aagctctcgg aattaagcgg cttgttgctg ccccagaccg
      181 aggaccagag gtcctcggcc gtcacgatgc gatcgggcgt gcgcgtcagg cgcgagaaga
      241 ttagaaactc cgtgcgcggc agcttgatag gctggccgcc gcacgcggcg tagtagttct
      301 tgtgctccac gcgcaggaag ccgtcgtcgt aaacgtcttg ctctgtgtcg accacggtcg
      361 ttccctgcgc gccgcttgct gactctggtt ttgttatcac ttgcatttgc cagctccagt
      421 acggttatta aaacttcaac ttcatcccaa actgcatgac acgcggacca ccgacagtgt
      481 ctgtgatctt tccgaagtcc gtgcctgctt caccgatcac ggtgttggga agagcaaaat
      541 tcacattgtt gaagacgttg aaaacatccc agcgaagttc aaacccgaca cgctccgtga
      601 ttcgtgtggt cttcgagagc cccatgtcga gccgtttctg gctgaagccg cgcaggatgt
      661 ttcggcccag gttgccgaag ccgcggttag tgggataacc gccagcgagg gacagcggcg
      721 agcaaagcgc cgcgggattg aacgcccgct cagtcggatc cgaaccggtt tgttgtaact
      781 ggtccaacgt tccgcaaagc gacggacgcc cgaaggccag gcgatagaga ccacccgaac
      841 cgagccggag atttgcgtag ttcgccggcg ttcccaccgt cacttccggt gaaaagatcg
      901 agtacggaag tcctgactgt gcttgtccga aaccggagag ccgccagccg gtgaggaact
      961 tcgaattaga accaaaactc ggaatgtcgt aaacaaagct caggctgaac cggtgcgggc
     1021 gatcgaaatc cgagaccgcg cgattcgcat tcgtgtcgaa cgcgttaccc tgtgctgtga
     1081 agccgacgtt cggcaggtca ggcttgccgc cgcccgcggt gctgccggga tcagccgaag
     1141 cgttgtcgat cgattttgag aacgtgtacg cggcgttgaa ttgaagaccg cgcgagagcc
     1201 gtttcgtcac gcttagctgc gccgagtgat aggtcgaata cgcggagttg ccaagcatga
     1261 tcgcttcggg aacgtcgaag ccgaggaacg gcgagcgtcc ttcgaacgtg atcaccgcgc
     1321 cggccgggtt cgcgagattc aggtcgatca ggccgccgag tgtcggattc gcaaaaccga
     1381 acgccttgcc caaacctctg gccctggctg tcgaaccgga gttcaagggt ccaagcggac
     1441 ttcccgcggc tacgtacgcg cggttgaaac gctcgtagat gaagtcgggt gtgtttggat
     1501 cgttcaggtc aaagccctgc gcgaacgacg tggcctgaag cagcttggtg cctttcgaac
     1561 caacgtaacg aacttcaacg agcaggttat tggtgaactc atactggccg ccaaaattcc
     1621 actgctgcac gtatggcgtt cgcaggt
//
LOCUS       DASWTX010001087         2259 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_106051, whole genome shotgun sequence.
ACCESSION   DASWTX010001087 DASWTX010000000
VERSION     DASWTX010001087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2259)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2259)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2259
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106051"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(502..>2259)
                     /locus_tag="VGD38_16610"
     CDS             complement(502..>2259)
                     /locus_tag="VGD38_16610"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0729706.1"
                     /translation="LGEALDGELGVAKRSFGPGTARPVIRGFDGDRVLVLQDGNRIGG
                     LGFESGDHAEPIDVLTVEKVEIVKGPATLLYGSNAIGGVVNTVSGHDSPHSGLNGYFT
                     GLGSTNSNQAGGSTGFEFGTDRWLVWGNVGGQRSGDYDTPIGKVRNSFSREASTAVGF
                     GYYPTRAFFSVNYNYNQRRYGIPVDPNETDPEVVELNPRRHSVEVRGGFRENPSFFQA
                     GTFSVQYNNYTHAELNSVTGETGTQFKNDSVVYQGLFDQRKIGKLSGRFGFWGMRRDF
                     SAIGEEALAPPTKQNAFAVFALQNVDFERVALQFGARVEHNGYKPEATESRGVLPDRS
                     FTGLSAAAGIRVNTWNGGALVANYTHSYRAPSLEELYNLGPHPGNLAFEIGNPDLVRE
                     RSDGLDFGVRHSSKRLRFEANGFYYHINDFVFLAPTGDVEDGLIVADYEQGTTRYTGA
                     EAQFSAALHRLVWLNLGLDYVNAKLTETDTPLPRIPPLRGRAGIEFRYKNLLLNPEIV
                     MANHQDRLFPTETPTAGYAVANLSGSYLIAENHRAHIIAFNFFNMGDTLYRNHLSFIK
                     EFAPEMGRGFRLTYTLRFF"
BASE COUNT          459 a          621 c          709 g          470 t
ORIGIN      
        1 ctgactggtc gagtgcaaag agcagtgcga cgcggtcggc gccgggtgaa aaatagattc
       61 cggtcgttac cttgtcctga tctttcaagg tcaggtcggc ttcagtcagg cccgggacgg
      121 cctggcctta ttggtctcga atgcgaatgg ggaaaaggag taattcggtg ttgacgcgta
      181 cgacgtcgcc gtcgtcacct gcatcctgcg caacggcaat cgcgcgctga gagccgagga
      241 ggagaagggc tatcaggcaa gcagggaaaa cgcgggatag catcaaccgt tcggctagac
      301 gaaaaaacga ccgaagagga ggatgcttag gatcacgatg atcgtgatga cgatgatctt
      361 gaccaggctc acggttaaat cctctgggtt tggggccaag aacggaattg actgggcgaa
      421 gcaagcctca ttctagaaat gccccgccca gcgtgtcaaa caagttggga tacgtcccgc
      481 tagcgtaact ggttcgatct tttagaaaaa cctcaaggtg tacgtcagcc ggaatccccg
      541 gcccatttcc ggcgcaaact ccttaataaa cgacagatgg ttgcgataga gcgtgtcgcc
      601 catgttgaag aagttaaacg cgatgatgtg cgcccggtga ttttcggcga tcaggtacga
      661 acccgagaga tttgccaccg cgtaccctgc ggtcggcgtt tcggtcggaa aaagacggtc
      721 ctggtggttc gccatcacga tttccgggtt cagcaacagg tttttgtacc ggaactcgat
      781 gccggcgcgc ccgcgtaacg gcgggatgcg cggcagcggc gtgtcggttt cggtcagctt
      841 cgcgttgacg taatcgagac cgagattcag ccagaccagc cgatgcagcg cggcgctgaa
      901 ctgcgcttca gctccggtgt aacgcgttgt gccttgctcg tagtccgcga cgatcaggcc
      961 gtcctcgacg tctccggtcg gagcgagaaa gacgaagtcg ttgatgtggt aatagaagcc
     1021 gttggcttcg aagcgcaggc gtttcgacga atggcgcacg ccgaagtcga gaccgtcgct
     1081 ccgttcgcgc actagatccg ggttgccgat ttcgaacgcg agattacccg gatgtggtcc
     1141 aaggttgtac agctcctcga gcgacggcgc gcgataagag tgcgtgtagt tcgcgacgag
     1201 tgcgccgccg ttccacgtgt tcacacgaat gccggctgcg gccgacaagc cggtgaaact
     1261 gcgatcggga agcacgccgc gcgactccgt ggcttcgggt ttgtagccgt tgtgttcgac
     1321 gcgtgcgccg aactgaagcg cgactctttc gaagtcgaca ttctgaagcg caaacactgc
     1381 aaacgcgttt tgctttgtgg gcggcgcgag tgcttcttcg ccgatagcgg agaagtcgcg
     1441 gcgcatgccc cagaagccga agcgaccgga gagcttgccg atcttccgtt gatcgaaaag
     1501 accctgatag acgacggaat cgtttttgaa ctgcgttccg gtttcaccgg ttactgagtt
     1561 cagctccgcg tgggtgtagt tgttgtattg aaccgagaac gtgcccgctt gaaagaacga
     1621 cggattctcg cgaaaaccgc cccgaacttc gacgctgtga cgccgcggat tcagctcgac
     1681 tacttccgga tcggtttcgt ttggatctac gggaatgccg tagcggcgct gattgtagtt
     1741 gtaattgacg ctgaagaacg ccctcgttgg atagtagcca aagccgacgg cggtgctggc
     1801 ttcgcgcgag aaggagtttc gcaccttgcc gatcggcgtg tcgtaatcac cggagcgctg
     1861 gccgccgacg ttgccccaca cgagccagcg atcggtgccg aattcgaaac ctgtgctgcc
     1921 gcccgcctgg ttgctgttcg tgctgccgag accggtgaag tagccgttga gcccgctgtg
     1981 cggtgagtcg tgaccggaga cggtgttgac gacgccgcca atggcgttgc tgccgtaaag
     2041 cagcgtcgcg ggacctttta cgatctccac tttctcgaca gttaaaacgt cgatcggttc
     2101 ggcgtgatcg cctgattcaa aaccgagccc gccgatacga ttgccgtcct gaagcacgag
     2161 cacgcgatcg ccgtcgaaac cgcggatcac aggtcgtgct gtgcccggtc cgaagcttcg
     2221 ttttgcgacg ccgagctcgc cgtcgagcgc ttcgccgag
//
LOCUS       DASWTX010001088         2430 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_58952, whole genome shotgun sequence.
ACCESSION   DASWTX010001088 DASWTX010000000
VERSION     DASWTX010001088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2430
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58952"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..449
                     /locus_tag="VGD38_16615"
     CDS             <1..449
                     /locus_tag="VGD38_16615"
                     /inference="COORDINATES: protein motif:HMM:NF012346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TCP-1/cpn60 chaperonin family protein"
                     /protein_id="HEY0729707.1"
                     /translation="RVEDALNATKAAAQEGIVVGGGIALLRASKVLDNHDGDDPDVRT
                     GFKIVRRALQEPLRRIAENAGIDGAIVVGQVEELKGNKGLNAVTGQIEDLAAAGIIDP
                     TKVVRTALQNASSIAGLLLTTDAAVTELPEPKKPAAPMHGGDDYDY"
     gene            697..>2430
                     /locus_tag="VGD38_16620"
     CDS             697..>2430
                     /locus_tag="VGD38_16620"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEY0729708.1"
                     /translation="MVDLGSYKDKFGDSGQRILEHALNESRRRDQNFVSVEHILQALT
                     VEEPDMFNSAMRDLSLDPVVVKMAIEKRLGSSRQQHVGKGFRIGPDTTDLFKRAMERA
                     RSQGRKVIEATDIFEALSNEDSLFVEVLRNMGANPEAVQENVRAQIQKREQEEELNRK
                     KFELPPYLKHFGVSLNRLARADKIPPTIGREKEIQQIIEILCHRERANSPMLVGEPGV
                     GKTAVIEGLARLIELEPEKVPARLRGSHVVQLQMGGIVAGTMLRGMFEERIKGIIDEV
                     KERDNLILFIDEAHTIIGAGAALGTSSDAANMFKSALARGEMRIIGATTLSEYKEYIA
                     EDEALARRFRIVKVVEPSITETREILLGLRPRLEKNYSVKISDDAINTALEMAPKYIR
                     NLHLPDKAIGWLDTAAVKVEINEPQKMVVQPEHIIDVISQESRIPRDLIYRDTTDRFA
                     MTEAMLGHRVIGQKAAIQSVAQRLRLNKGPLKESHYKPDGVLLFLGPTGVGKTELAKA
                     VAEFMFGDEEKMVRIDMSEYSDGTVSIEKLIGMPRGIVGSERGGILTEQLRENPYTVL
                     LLDEVETASPYL"
BASE COUNT          593 a          648 c          707 g          482 t
ORIGIN      
        1 tgcgcgttga agacgcactc aacgccacca aagccgcggc gcaggaaggt attgtcgttg
       61 gtggcggtat cgcactcttg cgtgcctcga aagtgctcga caatcacgac ggtgacgatc
      121 cggacgttcg caccggtttc aaaatcgttc gccgcgcgtt gcaggaacca ctgcgtcgca
      181 tcgcggagaa cgccggcatc gacggcgcga tcgtcgttgg ccaagtcgaa gagttgaaag
      241 gaaacaaagg tcttaacgcg gtcaccggtc aaattgaaga tctggccgcc gctggaatta
      301 ttgatccgac aaaagtggtg cgtactgcac tgcaaaacgc ttcatcaatt gccggtttgc
      361 tgttgacgac ggatgccgcc gtcaccgaat taccggagcc caagaaaccc gccgcgccta
      421 tgcacggagg cgatgactac gattactagg tttccaccga acgcaatcca cagattacac
      481 agacttccgt gagatctgtg gattgtctcc ggcaggaaaa ttgcaggaaa acccccgccg
      541 cagttagtta ttgcatcgaa acgcaacggc gcttatgctg gcgacatcca accccgcgtt
      601 ggatggttat gagttgtttg aaagttgaga gcttctgtcg caaccaaagt gaggcttttg
      661 cgaatctgat tgggcgcgat agtcgtaaag agaattatgg ttgatttagg ttcatacaaa
      721 gacaagtttg gcgacagcgg acagcgcatt ttagaacacg cgctgaacga gtcgcggcgt
      781 cgcgaccaaa acttcgtttc ggtcgaacat atacttcaag ccctgacggt cgaagagcct
      841 gacatgttca actctgcgat gcgcgatctg tcgcttgatc cggtggtcgt caaaatggcc
      901 atcgagaaaa ggctcggcag cagccggcag cagcacgttg gaaaaggttt tcgtatcggg
      961 cctgatacta cagacctgtt caaacgggcc atggagcgag cgcgaagtca ggggcgcaag
     1021 gtaattgaag cgactgacat tttcgaagcg ctgagtaacg aagacagtct gtttgtcgaa
     1081 gtattgcgta acatgggagc gaatcccgaa gcagtccagg agaacgttcg cgcacagatt
     1141 caaaaacgag aacaggaaga agagctcaac cgcaagaagt ttgaacttcc accttatttg
     1201 aagcacttcg gcgtgtcgct aaaccggctc gcccgcgcag acaagattcc accgacaatc
     1261 ggaagagaaa aagagatcca gcagatcatc gagatcctct gccatcgcga gcgtgcaaac
     1321 tcgccgatgc tcgtcggtga acccggcgtc ggcaagaccg cggtgatcga aggtctagca
     1381 cgtttgatcg agttggaacc ggagaaggtt ccggcgcggt tacgcggctc tcacgtcgtg
     1441 cagttgcaga tgggcggcat cgttgccggc accatgctgc gcggcatgtt tgaagaacgt
     1501 atcaaaggca tcatcgacga agtcaaagag cgggacaacc tgatcctctt catcgacgaa
     1561 gcacacacga tcatcggcgc gggtgcggcg ctcggcacgt cgtctgacgc ggccaacatg
     1621 ttcaagtccg cgctggctcg cggtgaaatg cgcatcatcg gcgcgaccac gctttcggag
     1681 tacaaagagt acatcgctga agatgaagct ctggctcgcc gtttccgtat cgtgaaggtc
     1741 gtcgagcctt cgatcaccga gacgcgtgag atcctgcttg gtctgcgtcc acgtttggag
     1801 aagaactact ccgtcaagat ctccgacgac gccatcaaca cggcgctgga gatggcgccg
     1861 aagtacatcc gcaacctgca cctgcctgac aaggcaatcg gctggctcga cactgccgcg
     1921 gtgaaggttg aaatcaacga accgcagaag atggtcgttc aacccgagca catcatcgac
     1981 gtcatctcgc aggagtcacg tattccgcgc gacctgatct atcgcgacac gaccgatcgg
     2041 ttcgcgatga cggaagcgat gctcggtcac cgcgtgatcg gtcagaaggc agcgattcag
     2101 tcggttgcgc aacgcctgcg gctgaacaaa ggtccactga aagagtcgca ctacaaaccc
     2161 gacggtgtgc tgctgttcct tggtccaacc ggcgttggta agactgagtt ggcgaaagcc
     2221 gtcgccgagt tcatgtttgg cgacgaagag aagatggtcc gcatcgacat gtcggaatac
     2281 agcgacggca cagtcagcat cgagaagttg atcggtatgc ctcgcggcat cgttggttca
     2341 gaacgaggag gaatcctgac tgagcaactg cgcgagaatc cgtacacggt gctgctgctg
     2401 gatgaggtcg agacggcttc gccctacttg
//
LOCUS       DASWTX010001089         2420 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_251624, whole genome shotgun sequence.
ACCESSION   DASWTX010001089 DASWTX010000000
VERSION     DASWTX010001089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2420)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2420)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2420
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251624"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2420
                     /locus_tag="VGD38_16625"
     CDS             <1..>2420
                     /locus_tag="VGD38_16625"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY0729709.1"
                     /translation="IVTIFAIEETDGIDFIVMEFVEGETLNAHLALTGALPLLSLLDV
                     GIQIADALQAAHDSGIIHRDIKPGNILITPKGLVKVTDFGLAKLVRVNSDAIDREALT
                     LAANLTGPGIVLGTAAYMSPEQTRGEPLDLRSEIFSLGSLLYEAATRTRAFSGPSVLA
                     IMHAIAAIDPPPPSKLRPELPNEFDLIIERALAKNRELRYNSAAEMGDALRSLRASLS
                     GTWSGFPIVYDSDLIDVSAPSFVGREPEMRKLDGLLDLTIEGTGRVVFITGEPGIGKT
                     SLSDEFLRRTRRQRPGLLISRGRCVEQYGTGEAYLPFLDAMGGLLQMPGRERIAAVMR
                     AYAPTWCMELPTAFASSGSLEKLQQETIGATKERMMREMGDALGILSTSSPIVLLLED
                     LHWADPSSVDLLRHLCQRIAGQRLLIAGTFRPEDVERSGHPLKSYKAEMMAHHRCEEI
                     ALGSWSREHIAEYLDATFAPNDFPGELTSLIHEKTEGHPLFAANFLQYLSERGDLSKT
                     NNRWSLVRPVAEMNLEAPESVRGMISKKIDALDAEGRRTLQYASVEGAEFHSTVTAKL
                     LGVDEIDLEERLADIEKTHRLITTLGEEELPDGSITTRYRFAHALYQNFLYGDLVNKR
                     RIMLHQQAGEQLLRHFGKRAPQIATHLAIHFERGRDFSRAVEYINHAGDHAAKLYGYA
                     EAERHYTQALKLVEKLPSESQAEQLCTLYHKRGTVNHAVGNFTQAANDFTKMLEQAQT
                     LGSLELQSHALNSLTMTLFFSHRLEETLARAAEALEVAARAGNEKLRLDTMLMVGLKH
                     LCYGELKE"
BASE COUNT          486 a          707 c          754 g          473 t
ORIGIN      
        1 catcgtcacg atcttcgcga tcgaggaaac cgacggcatc gatttcatcg tgatggagtt
       61 tgtcgaaggt gaaacgctca acgcgcacct cgcattaaca ggtgcactgc ctttgttgtc
      121 gctgctcgac gtcggcattc agatcgccga cgcgctccag gcggcacacg acagcggcat
      181 cattcatcgc gacatcaaac cgggaaatat tctaatcacg ccgaaaggtc tcgtgaaggt
      241 tacggacttc ggtctcgcca agctcgtgcg cgtcaacagc gacgcgatcg accgcgaagc
      301 gcttacgctg gctgcaaacc tgaccggacc cggcatcgtg ctgggcaccg ccgcgtacat
      361 gtcgccggaa caaacacgcg gcgagccgct cgatctgcgt tcggagatct tttcgctcgg
      421 ctcgttgctg tacgaagccg cgacgcggac acgcgcgttt tcaggtccca gcgtgctcgc
      481 gatcatgcac gcgattgccg cgatcgatcc gccgccgccg agcaagttgc ggcctgagct
      541 gccgaatgag tttgacctga tcatcgagcg cgcactcgcg aagaaccgcg agctgcgtta
      601 caactccgcc gcggaaatgg gtgacgcgtt gcgcagtttg cgcgcgtcgt tgagcggcac
      661 gtggtcgggt tttccgatcg tttacgattc ggatctgatc gacgtgtcgg cgccgtcgtt
      721 tgtcggacgc gaaccggaga tgcgcaagct cgacggtttg ctcgacctga cgatcgaggg
      781 aaccgggcgc gttgttttta tcaccggcga acccggcatc ggcaagactt cgttgagcga
      841 cgagtttctg cgccgcacgc gcaggcagcg tccgggtctg ttgatttcac gcgggcgttg
      901 cgtcgagcag tacggcacgg gcgaagctta cctgccgttt ctcgatgcga tgggcggttt
      961 gttgcaaatg cccggtcgcg agcgcattgc cgcggtgatg cgcgcgtacg cgccaacgtg
     1021 gtgcatggaa ctgccgactg cttttgcttc gagtggctcg ctggaaaaac ttcaacagga
     1081 aacgatcggc gcgacgaagg aacgcatgat gcgcgagatg ggcgacgcgc tcggcatact
     1141 ctccacgtct tcgcccatcg tgctgttgct cgaagatctg cactgggccg atccgtcgag
     1201 cgtcgatctg ttgcgccatc tgtgccagcg catcgcgggt caacgattgc tcattgccgg
     1261 aacgtttcgt cccgaagacg tcgaacgcag cggccatccg ctcaagagtt acaaagccga
     1321 gatgatggcc caccatcgtt gcgaagagat cgcgttgggg tcgtggagcc gcgagcacat
     1381 cgctgagtat ctcgacgcga cgtttgcgcc gaacgatttt cccggtgagt tgacttcgct
     1441 gattcacgaa aagactgagg gccatccgct gtttgccgcg aacttcctgc agtatctcag
     1501 cgagcgcggc gatctcagta aaactaacaa ccgctggtcg cttgtgcggc cggtggcgga
     1561 gatgaatctc gaagcgccgg aaagcgtgcg tggcatgatc agcaagaaga tcgatgcgct
     1621 cgacgccgag ggacgccgca cgttgcagta tgcgagtgtg gaaggcgcgg agtttcattc
     1681 gacggtcacg gcaaagctgc tcggcgttga cgagatcgac ctggaagaac ggctcgcgga
     1741 catcgagaaa acgcatcgac tgatcacgac gctgggcgaa gaggaattgc ccgacggttc
     1801 gataacgacg cgctatcgct tcgcgcacgc gctctaccaa aacttcctgt acggcgatct
     1861 ggtgaataaa cgccgcatca tgttgcacca gcaggcgggc gaacagttgc tccggcactt
     1921 cggtaaacgt gcgccgcaga ttgcgacgca cctggctatt cacttcgagc gcggccgcga
     1981 tttcagccgc gcggtcgagt acatcaatca cgccggcgat cacgccgcga aactctacgg
     2041 ttacgcggaa gcggaaaggc actacacgca ggcgctgaag ctcgtcgaga aattgccgtc
     2101 cgagtcgcag gcggaacagt tatgcacgct ctatcacaag cgcggcaccg tgaatcacgc
     2161 ggtcggtaat ttcacgcagg cggcgaacga cttcacgaag atgctcgaac aggcgcagac
     2221 gcttggctcg ctcgagctgc agtcgcacgc gttgaactcg ctgacgatga cgctcttctt
     2281 ctcgcatcgt ttggaagaga cgctggcgcg tgccgctgaa gcgctcgagg ttgccgctcg
     2341 cgctggtaac gagaagctgc gactcgacac gatgttgatg gtgggcctga agcatctttg
     2401 ctacggcgaa ctgaaggaag
//
LOCUS       DASWTX010001090         1744 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_12902, whole genome shotgun sequence.
ACCESSION   DASWTX010001090 DASWTX010000000
VERSION     DASWTX010001090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12902"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(101..832)
                     /locus_tag="VGD38_16630"
     CDS             complement(101..832)
                     /locus_tag="VGD38_16630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729710.1"
                     /translation="MAEERTLGLARAQDLTGEEPSKEELQRRLDEARDSISHTVGEIR
                     ESVANQVQAVKETLDWREQFKKRPVAWSAGAVGVGFLVGYGLAGIVKGDSDRDRYYDR
                     DRYEETSRSYAAQPILGGHGASTLSAHASSTDVAGYGNGKHEDGPGFFEKLTSTPAYN
                     KVKHEASNIGEALVQEITKTAKTMVIPALITSLRNFIGGHLPNASTSEGQQSQGYYSG
                     VRNESDRTRSGAGSNYQPALERNPS"
     gene            complement(811..1296)
                     /locus_tag="VGD38_16635"
     CDS             complement(811..1296)
                     /locus_tag="VGD38_16635"
                     /inference="COORDINATES: protein motif:HMM:NF018980.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HEY0729711.1"
                     /translation="MSATKRSLTNADDAAVIRNNEDRAITNGNNESLPTLLSRLGDDA
                     MQLINSQLALFKVEMKEEANTFARGAAMIALGGVIATIGFALLNVAIAFGVSTLFSQA
                     GFSQPASYALGFIVTGAFYLIVGGILMLVMKNRLAKQQLVPPRTVQELRKDKQWLKSE
                     L"
     gene            complement(1336..>1744)
                     /locus_tag="VGD38_16640"
     CDS             complement(1336..>1744)
                     /locus_tag="VGD38_16640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF883 C-terminal domain-containing protein"
                     /protein_id="HEY0729712.1"
                     /translation="RILKMSQNRTNEGTQGNFGGGATTPGTTGGSTGTPGTGTHGTTG
                     QSGTGGTGTATALSQTAQDYGQRLSEAATHAKDYVSDKVSVVGDKIKDLQNADLGELA
                     ENAKEYARRKPGQALLISAGVGLLLGMILRGRR"
BASE COUNT          326 a          525 c          451 g          442 t
ORIGIN      
        1 cgtgagttat ctccagaaga agattagcat aaaaaagcgc gagccccgtg ggactcgcgc
       61 taaaggagat tcgctttact caaccttagt caactgacgc ttagcttggg tttcgttcca
      121 gagcgggttg gtagtttgaa cctgctcccg aacgcgtccg atctgattcg ttcctgacgc
      181 ctgagtagta accttgtgat tgttgtcctt cgctggtcga tgcgtttggt aaatgcccgc
      241 cgatgaaatt acgcagcgac gtaatcaacg ccggaataac cattgttttt gccgtcttcg
      301 tgatttcctg gaccagcgcc tcgccaatgt tgctggcttc gtgcttcacc ttgttatagg
      361 cgggcgtcga agtcagcttt tcgaaaaagc ccggtccgtc ttcgtgtttg ccgttgccgt
      421 aaccggcaac gtctgtcgac gaagcatggg cgctcagagt cgaggcgccg tgcccgccca
      481 gaatcggctg cgccgcatag cttctcgatg tttcctcgta gcggtcccga tcgtaataac
      541 gatcgcgatc gctatcaccc ttcactatcc ccgccagacc gtaaccgacg agaaatccga
      601 cacccactgc tccagcgctc caagccaccg gccgtttctt aaactgctca cgccaatcaa
      661 gagtttcttt aactgcctgc acctgatttg ccactgactc tcttatctcc cccaccgtgt
      721 gtgaaatcga atcccgagct tcgtcgagac ggcgctgaag ttcctctttg gagggctcct
      781 cgcccgtcag atcctgtgct cgagccaatc ctaaagttcg ctcttcagcc attgcttatc
      841 ctttctcagc tcctgcactg tccttggagg caccagttgc tgtttcgcaa ggcggttctt
      901 catgacgagc atgagaatcc cgccgacgat cagataaaag gccccagtca cgatgaaacc
      961 gagcgcgtaa ctcgcgggtt ggctaaaacc cgcctggctg aacaacgtcg acacgccaaa
     1021 ggcaatcgcc acgttgagta gcgcaaaccc gatcgtggcg atgacgccgc cgagcgcgat
     1081 cattgccgcg ccacgcgcaa acgtgttggc ctcttccttc atctccactt tgaacaacgc
     1141 gagctgcgag ttgatcaact gcatcgcatc gtcgcccagg cggctcaaaa gagtcggcag
     1201 gctttcgttg ttgccgttag tgatcgccct gtcttcgttg ttacgtatta ctgccgcgtc
     1261 gtcagcgttc gtcaaactgc gttttgttgc cgacatttcg gtttccccct gtccgtgaat
     1321 ttcgagttac ccggattaac gtctgccgcg cagaatcatt ccgagcaaca atccgacgcc
     1381 tgctgagatc aggagcgcct ggcctggttt ccggcgtgca tactccttcg cgttttccgc
     1441 gagctcgccg agatccgcgt tctgtaaatc tttgattttg tcgccgacga ccgagacttt
     1501 gtcactgacg taatccttcg cgtgggtcgc ggcttccgat agacgttgtc cgtaatcctg
     1561 agctgtttgt gaaagtgcgg tcgcggtgcc agtgccgccc gttcctgatt gtccggtagt
     1621 gccgtgggtt ccggtgccgg gagttccggt cgaaccgcca gtcgtgccgg gggtggtggc
     1681 gccgccgcca aaattgccct gcgtaccttc gttagttcga ttctgtgaca tcttcaaaat
     1741 tctc
//
LOCUS       DASWTX010001091         2953 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_319900, whole genome shotgun sequence.
ACCESSION   DASWTX010001091 DASWTX010000000
VERSION     DASWTX010001091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2953)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2953)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2953
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319900"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..796)
                     /locus_tag="VGD38_16645"
     CDS             complement(<1..796)
                     /locus_tag="VGD38_16645"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY0729713.1"
                     /translation="MKSVVQQEEQFQLATYKKMSLVAERGEGVWIYTSDREKYLDLYG
                     GHAVAGTGHCHPHVVKAIREQAEQLLFYSNLVYSSTRARAAEKLVAIAPAPLTKAFFC
                     NSGTEANENAMRMARMATGREQIITFSGGFHGRTADAISATFLGKYREIGKPNVPGHL
                     KAEFGDIESVRALADDTVAAIMLEPIQSMAGVRVAEPGFYRALRELCDERGIVLIYDE
                     VQTGVGRTGEWFFAGSAAGDVVVPDVITLAKALGSGVPVGACLVNEE"
     gene            complement(793..1836)
                     /gene="argC"
                     /locus_tag="VGD38_16650"
     CDS             complement(793..1836)
                     /gene="argC"
                     /locus_tag="VGD38_16650"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: protein motif:HMM:TIGR01850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HEY0729714.1"
                     /translation="MQLAQRKFKVAIFGGSGYGGSELLRILLFHPNVEVVFVTANEHA
                     GKPVRDVHRNLHGLTDLSFIKAPEEIGSLSNLDCVFFALPHGQAMSIVPSLGSSIKAI
                     DLSGDFRLRDESLFQKHYKLQHSAMSAQRDFVYGLTETNREAISGARLIANPGCFATA
                     TLLGLAPLVANGLLSGRVVVDAKTGSSGSGAKAAANTHHPQRMNSFYAYKPFTHQHVP
                     EIEQELSHVGDWTNELVFMTHSLPVSRGIFASIYAETKRELTQSDLQQLFADYYRGSF
                     FVRLVDGSPDINWVKTTNFCDIGFAARGKQVVVFSAIDNLVKGAAGQAVQNMNLMFDL
                     EETTGLILAGTNP"
     gene            complement(1817..2884)
                     /locus_tag="VGD38_16655"
     CDS             complement(1817..2884)
                     /locus_tag="VGD38_16655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729715.1"
                     /translation="MSDINVIEVDKIGSATSPLRLTKTVAMVSSAASPKAGDVVVVRA
                     LTDSATYNMLELPTGRLAKINPGDLLLGVLGRRRALKGFVGDVPPTVTSGDQLHLLNM
                     GGVIGRCTGHHSSLSDAIELEVIGLACDKDGNVLNIADACLLPRTHLGETAPIVMIAG
                     TSMNSGKTVAATELIKQATRAGLKVAAGKLSGVACLRDTLNMADHGAIATASFLDCGL
                     PSTVDVADLAPTAKAIIARLNQINPDLIVIELGDGILGGYSVDTIFADSELLEATAAL
                     VFCASDYVGAWGGIELLRRRGVEVNVISGSVTDSRMGEDYIKEQFQVPAANARREGAA
                     LFEVVMESVSSLEKSHAVSTT"
BASE COUNT          613 a          937 c          808 g          595 t
ORIGIN      
        1 tctcttcgtt aacaagacat gcaccaaccg gaacgccgct cccaagcgct ttcgccaacg
       61 tgatcacatc aggcacgaca acatcgccag ccgcgctgcc cgcgaagaac cactcaccag
      121 tgcgtcccac acccgtttgc acttcgtcat aaatcaaaac gatgccgcgc tcatcacaca
      181 attcgcgcag cgcacgataa aaacccggct ccgctacacg cacaccagcc atcgactgaa
      241 tcggctccag catgatcgcc gccacagtgt catccgccag cgcccgcacg gattcgatgt
      301 caccaaactc ggctttcaaa tgtcccggca cgtttggctt accgatctcg cgatacttcc
      361 cgagaaacgt cgcgctgatc gcgtcggcgg tgcgcccgtg aaagccgccc gagaaagtga
      421 tgatctgttc gcggccggtc gccatgcgcg ccatgcgcat cgcgttctcg ttcgcttccg
      481 tgccggagtt gcagaagaac gccttcgtga gcggcgcagg cgcgatcgcg acgagcttct
      541 ccgccgcacg cgcgcgcgtg ctcgaataaa cgagattcga atagaacaac aactgctccg
      601 cctgctcgcg aatcgccttc acgacgtgcg ggtgacaatg acccgtgccg gccacggcgt
      661 gtccgccgta aagatcgaga tacttctcgc ggtcgctcgt gtagatccag acgccctcgc
      721 cgcgctccgc gacgagtgac atcttcttgt aggtggccag ttgaaactgt tcctcttgtt
      781 ggaccacgga tttcacggat ttgtccctgc cagaatgagt ccagttgtct cttcgagatc
      841 gaacatcaaa ttcatgttct gcactgcttg tccggcagcg cctttcacga ggttatcgat
      901 cgccgagaag acgaccactt gcttgccgcg cgctgcgaaa ccgatgtcgc agaagttggt
      961 tgtcttcacc cagttgatgt ccggcgaacc gtcaacaagg cgaacgaaaa aggacccgcg
     1021 atagtagtct gcgaagagtt gttggagatc ggattgggtt aactcgcgtt tggtttcagc
     1081 gtagatcgac gcgaatatcc cgcgcgatac gggcagcgaa tgagtcatga agaccagttc
     1141 gttggtccaa tccccaacgt gactgagctc ctgttcgatc tccggcacgt gttggtgcgt
     1201 gaacggcttg taagcgtaga acgaattcat gcgctgcgga tgatgcgtgt tcgccgcggc
     1261 ctttgcgccc gaaccggacg aaccggtctt cgcatcgacg accacgcggc cgctcagcaa
     1321 gccgttcgcg acgagcggcg ccagaccgag caaagtcgcg gtggcaaaac atccggggtt
     1381 cgcgatcagg cgagcgccgg agatggcttc gcggtttgtt tcggtcaggc catagacgaa
     1441 gtcgcgttgc gcactcatcg ccgagtgctg cagtttgtag tgcttttgaa atagggattc
     1501 gtcccgcaag cgaaaatcgc ctgagagatc aatagccttg attgacgacc cgagactcgg
     1561 gacgatcgac atggcctggc cgtgcggcag cgcgaagaag acgcagtcga ggttgctgag
     1621 cgatccgatt tcttcgggtg ctttgatgaa gctcagatcc gtaagcccgt gaaggtttcg
     1681 gtgcacgtca cgcacgggtt tgccggcgtg ttcgttagcg gtgacgaaca cgacctccac
     1741 gttcggatgg aacagtagga tacggagcag ctctgagccg ccgtaaccgg agccaccgaa
     1801 gatcgccact ttgaacttac gttgtgctaa ctgcatggct tttttccagg gatgaaacgg
     1861 attccattac cacctcgaac agcgctgcgc cctcgcgtcg cgcgtttgcc gccggcacct
     1921 gaaactgctc cttgatgtag tcttcgccca tgcgcgaatc ggtcaccgag ccggagatca
     1981 cgttgacctc cacgccgcgc cgccgcagca actcgatccc gccccacgcg ccgacgtaat
     2041 cagacgcaca gaacaccagc gcggcggtcg cttcgagcag ttcgctatcc gcgaaaatcg
     2101 tatctacgga gtatccgccc aaaatcccat cccccagttc aatgacaatg aggtcgggat
     2161 tgatttggtt cagtctcgcg atgatggctt tcgccgtggg cgcgagatcc gcgacgtcaa
     2221 cagtcgaggg caatccgcaa tcgagaaaac tcgcggtcgc gatcgcgccg tggtccgcca
     2281 tgttcaacgt gtcgcgcaga caagcaacac ccgacagttt tccggctgcg actttcaacc
     2341 ccgcacgcgt cgcttgttta atcaactcag tcgccgcgac ggtcttgccg ctgttcatac
     2401 tcgtgcccgc gatcatcacg atcggcgccg tctcgccaag atgagttcgc ggcagcaagc
     2461 acgcgtccgc aatgttcagc acgttgccat ccttgtcgca cgccaagccg atcacttcca
     2521 actcgatcgc gtcgctcaag ctcgaatgat gtccggtgca acgtccgatc acgccgccca
     2581 tattcagaag gtgcaattga tccccgctcg tcacggtcgg cggaacatcc cccacgaagc
     2641 ctttcaacgc gcggcgccgc ccgagcacac cgagcaacaa atccccggga ttgatcttcg
     2701 ccaaacgtcc ggtcggcaac tcgagcatgt tgtaggtggc gctgtcggtc agcgcgcgca
     2761 ccaccaccac gtcgcccgct ttcggcgaag cagcagacga aaccatggcc acggtttttg
     2821 tcagtcgcag cggcgaagtc gccgatccga tcttgtcgac ctcaataacg ttgatgtcac
     2881 tcatctgtca cctcccaacc gcagccgcag cgcgttcagc ttgataaaac cttccgcatc
     2941 gcgttggttg taa
//
LOCUS       DASWTX010001092         1989 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_12913, whole genome shotgun sequence.
ACCESSION   DASWTX010001092 DASWTX010000000
VERSION     DASWTX010001092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1989)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1989)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1989
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12913"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1953
                     /locus_tag="VGD38_16660"
     CDS             <1..1953
                     /locus_tag="VGD38_16660"
                     /inference="COORDINATES: protein motif:HMM:NF013927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0017000 - antibiotic biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HEY0729716.1"
                     /translation="VFGFAYAQAEDNFWRVEENFIHALGRASELYGEKNLDEDRLNHA
                     LEIPRLARAEYARLDPRMRSLCDAFAAGFNYYIARHPEDHPRLLTKIEPWYTLAFIRY
                     NYFQNGFARDPSLRRMTLQTAALENDLKQHTGSNGWVIGPSKSATGHAMLFINPHLPF
                     FGPGQVYEGHVHSDEGWNFTGYTRFGFPFPYVGHNENGGWVSTDNAADLADVYMETFD
                     DPARPLAYKYGDGYRLAIERFEEVRVKTANGLETRKFTMRKTHHGPILAARDGKMFAV
                     RIAKFESDGWLREWYDMTRATSLAALKKAMTPLNMLFGNVMYADRQGNTWDLYNGAVP
                     KRDPRFDWTKPVDGSDPATEWKGYHTIDELPQLTNPKTGWMQNCNTTPFLLTSEGNPD
                     PKQFPKYMVQERDNPRGAISREILASKAKFTFEEWTRLAFDTRVMNASKRLPELTQKF
                     NQLVATIGYPGLERRVHEAHDELVRWDQRSSNDSVAMTIFSLWHDRVSRNKDEHPVVA
                     LTEVLNALQRDFGTWKVAWGEFTRLQRIDESKGEEFQDSRPSIAVSGVNGNDGAVFTL
                     FAAPIGGQKRRYGVAGGSYVSVVEFGPKVRALSVHTFGASGNPKSKHFMDQAALYVRG
                     EFKPAWLTLEDIRANLEAAYHPGEER"
BASE COUNT          455 a          583 c          581 g          370 t
ORIGIN      
        1 gttttcggct ttgcctatgc tcaggcggaa gacaatttct ggcgcgttga agaaaacttt
       61 atccacgcgc tcgggcgggc gtccgagttg tatggcgaga agaacctgga cgaagatcga
      121 cttaaccacg cgctcgaaat ccccagactt gcgcgcgcag aatatgctcg actcgacccg
      181 cgtatgcgtt cgctgtgcga tgcgttcgca gccggcttca actactacat cgcccgccat
      241 cccgaagatc acccgcgact gctcacgaaa atagagccgt ggtacacact cgctttcatt
      301 cgttacaact acttccagaa cggcttcgca cgcgatccga gtctgcggcg gatgactttg
      361 caaaccgccg cgctcgaaaa cgatctgaaa caacacaccg gttcgaacgg ctgggtcatt
      421 ggtccatcga agagcgcgac cgggcacgcg atgcttttca tcaacccgca ccttcccttc
      481 tttggtccgg gccaggttta cgaaggacac gttcacagcg acgagggttg gaacttcacc
      541 ggctacacgc gttttggttt tccgtttccg tacgtcgggc acaacgaaaa cggcggctgg
      601 gtcagcacgg acaacgcggc cgacctggcg gacgtctaca tggaaacgtt cgacgatccg
      661 gctcgtccac tcgcttacaa gtacggcgac ggttaccgcc tcgccatcga acgcttcgaa
      721 gaagtccggg tcaaaacggc gaacggtctc gagacgcgca agttcacgat gcgcaagacg
      781 catcacggcc caatcctcgc cgcgcgggac ggcaaaatgt tcgcggtacg cattgcgaag
      841 tttgaatccg acggctggct gcgcgagtgg tacgacatga cacgcgcaac ctcgctcgcg
      901 gcgctgaaaa aggcgatgac gccgctgaac atgctcttcg gtaacgtgat gtacgccgat
      961 cgccagggaa acacgtggga tctctacaac ggcgcggtgc ccaaacgcga tccgcgtttc
     1021 gactggacga agccggtgga cggcagcgat ccggcgacgg agtggaaggg ctatcacacg
     1081 atcgacgagt tgccgcaact cacaaacccg aaaaccggct ggatgcagaa ctgcaacacg
     1141 actccgtttc tgttgacgag cgaaggcaat cccgatccga agcagtttcc gaagtacatg
     1201 gtccaggaac gcgacaatcc tcgcggcgcg atctcgcgcg agattttggc gagtaaagcg
     1261 aagttcacgt ttgaagaatg gacgcgactg gcgtttgaca cgcgcgtgat gaacgcaagc
     1321 aagcggttgc cggagttgac gcagaagttc aatcaactcg tggcgacaat cggttatcca
     1381 ggtctcgaac gacgagtaca cgaagctcat gacgagctcg ttcgctggga ccaacgcagc
     1441 tcgaacgact cagtggccat gacgatcttc agtctctggc acgatcgcgt ctcgaggaat
     1501 aaagacgaac atcccgtcgt cgcactgacc gaagtactca atgcgctgca acgcgacttc
     1561 ggcacgtgga aagtcgcgtg gggcgagttc acgcggctgc aacgcatcga cgaaagcaaa
     1621 ggggaagagt ttcaggattc gcgaccgagc atcgccgtca gcggtgtgaa cggcaacgac
     1681 ggcgcggtct tcacgttatt cgcggcgccg atcggcggac agaaacgccg ttacggtgtt
     1741 gccggtggaa gctatgtcag cgtcgtcgag tttgggccaa aggttcgagc actttcggtc
     1801 cacactttcg gcgccagcgg caatccgaag agcaagcact tcatggacca ggcggcgctt
     1861 tacgtgcgcg gcgagttcaa acccgcgtgg ctcacgctcg aagacatccg cgcgaacctc
     1921 gaagccgcgt atcatccagg tgaagagcgg taaccactct tcttctggtt tggtctgcat
     1981 aaaacgccg
//
LOCUS       DASWTX010001093         2671 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_346211, whole genome shotgun sequence.
ACCESSION   DASWTX010001093 DASWTX010000000
VERSION     DASWTX010001093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2671
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346211"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..225)
                     /locus_tag="VGD38_16665"
     CDS             complement(<1..225)
                     /locus_tag="VGD38_16665"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024240.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEY0729717.1"
                     /translation="MATANTPSQAQLKGNIRTDVCIVGAGIAGMTTAYLLAKEGRSVV
                     VLDDGPIGGGMTGRTTAHLTNAFDDRYAEME"
     gene            complement(271..432)
                     /locus_tag="VGD38_16670"
     CDS             complement(271..432)
                     /locus_tag="VGD38_16670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729718.1"
                     /translation="MADNGSGSTGVVAVLVIFVIIVVAALFVFGGRWFGGDKKVDVNI
                     SAPSGNPTK"
     gene            complement(463..1407)
                     /locus_tag="VGD38_16675"
     CDS             complement(463..1407)
                     /locus_tag="VGD38_16675"
                     /inference="COORDINATES: protein motif:HMM:NF005214.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY0729719.1"
                     /translation="MASTKSRNSRKSARKASGTTNGGHKGRLEQPKSPLPAQHQPKPG
                     QEHELDPQPRYEAPHYVGANKLKDKVALITGGDSGIGRAVAVLFAREGADVAFTFLKE
                     EKQDANETKRAVEAEGRRAYPMVGDVRDAKICRKLVKQTVDKLGRLDILVNNAAFQQH
                     QESLEEITDEQWDQTFKTNIYGYFYMTKAALPHLAEGSAIVNTGSITGLEGSKQLLDY
                     SATKGAIHAFTKSLAQNLVERGIRVNCVSPGPVWTPLNPADKEAEDVAKFGADTPYKR
                     PAQPEEIAPAFVYFASEIDSSYVTGEVLTLLGGETTAG"
     gene            complement(1416..1688)
                     /locus_tag="VGD38_16680"
     CDS             complement(1416..1688)
                     /locus_tag="VGD38_16680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729720.1"
                     /translation="MAQSRESVEEAVALGTESAEEVEAAMSEKDRSGPGMSLGLLLSA
                     IEKERDSLELMEQGLDTLREAIEQRRRSLEMQQQVLTELSEESQNE"
     gene            complement(1900..2067)
                     /locus_tag="VGD38_16685"
     CDS             complement(1900..2067)
                     /locus_tag="VGD38_16685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729721.1"
                     /translation="MNSKPAYEVACSWCGALIRSSSNEGPERMCLICHARMLNDYFQR
                     LRQISGEKRRQ"
     gene            2160..>2671
                     /locus_tag="VGD38_16690"
     CDS             2160..>2671
                     /locus_tag="VGD38_16690"
                     /inference="COORDINATES: protein motif:HMM:NF013215.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729722.1"
                     /translation="MTNLERLQQIGIRRIGTPTRGFRYLPTNGRLVKGDLDRIRALRI
                     PPAWTDVFINPAAKGRVQAIGKDAAGRWQYLYHADHTKVQEARKFTRLAKFAKSLPKL
                     RATISGHLRQSGLGRERVLAAILRVLSTCYMRPGSQSYASEHGSYGIATLRRKHVTVK
                     GDLIEFDFPG"
BASE COUNT          519 a          780 c          713 g          659 t
ORIGIN      
        1 ctccatctcg gcgtaacgat cgtcgaacgc gttggtcagg tgcgcggtcg tgcgtcctgt
       61 cataccgccg ccgatcggtc catcatcgag gaccaccacc gatctgccct ctttagcgag
      121 cagataggca gtggtcatgc ctgcgatgcc ggcgccaacg atgcacacgt cggtgcggat
      181 gttccctttt aattgcgcct gagatggcgt attggccgtt gccatccaga ccgacgtcgt
      241 aacttgagag tcatccttca tagctcgttg ctacttcgtg ggattgcccg acggagctga
      301 gatgttgacg tcgactttct tgtctccacc gaaccagcga ccaccgaaca caaacaacgc
      361 tgctaccacg atgatcacga agataacgag aactgcaaca actccagtgc ttccactacc
      421 attgtctgcc atgttttctt ctccttttgt tatccggttt tattatccgg ctgtcgtttc
      481 accacctaac aaagtcaaaa cttccccagt cacgtaactc gaatcgattt ccgacgcgaa
      541 ataaacaaac gcgggggcga tctcttccgg ctgtgccgga cgcttgtaag gcgtgtcggc
      601 gccaaacttc gccacgtcct ccgcttcctt gtccgcggga ttcaacggcg tccacaccgg
      661 cccgggcgaa acacaattca cgcgtatgcc acgctcgacc aggttctgag cgagcgactt
      721 cgtaaaggcg tgaatcgcgc ctttcgtcgc cgagtagtcg agcaattgtt tgctgccttc
      781 gagcccggtg atcgaaccgg tgttaacgat cgcgctgcct tccgcgagat gcggcaacgc
      841 cgctttggtc atgtaaaagt agccgtagat gtttgtcttg aaagtctggt cccactgttc
      901 gtcagtgatc tcttcgagac tctcctggtg ctgttgaaac gccgcgttgt tgacgaggat
      961 gtcgagcctg ccgagcttgt cgacagtttg cttgacgagc ttccggcaga tctttgcatc
     1021 ccgtacgtcg cccaccatcg gatacgcacg ccgtccttcg gcttcgacag cacgtttggt
     1081 ttcgttcgcg tcctgctttt cttctttcag gaacgtgaat gctacgtcgg cgccttcgcg
     1141 cgcaaagagg acggcaaccg cgcggccgat gcctgagtca ccgccggtaa tcaacgcaac
     1201 tttatctttg agcttgttgg cgccgacgta atgcggtgct tcgtagcgcg gctgcggatc
     1261 gagctcgtgc tcctggccgg gcttgggttg atgttgcgcc ggcagcggtg acttcggctg
     1321 ttcgagacgg cccttgtgtc caccgtttgt tgttccggaa gccttgcgcg cactcttgcg
     1381 cgaatttcta ctcttcgtac tcgccattcg atcacctatt cgttctgact ctcttccgac
     1441 aactcggtta acacctgctg ctgcatttcc aatgaacgcc ggcgctgttc gatcgcctcg
     1501 cgcagcgtgt cgagaccttg ttccatcagt tcaagactgt cgcgttcttt ctcgatcgcg
     1561 ctgagcaaca aaccgagcga cattcctgga ccactgcgat ccttttcact catcgccgct
     1621 tcgacttctt ccgccgactc ggttccgagt gcaacagctt cttctaccga ctcacgtgat
     1681 tgcgccatgt gtgccgctca cttcctgttt caagacgttc cttttcacgg gccagcaaat
     1741 cgcgatccgg cgcagcaaat gcgccgaaaa catgcgctac ttgttacgca aagatattgg
     1801 catcgggctt gcggactcgt tgtgaacctg ttcggaattt gggcagaggt gcttcggaat
     1861 taaacaaagg aggaaacggg ctgtacagga aacctacact cattggcggc gcttctcgcc
     1921 gctgatttgt cgcagccgtt gaaagtagtc gttgagcatt cgcgcatggc agatcagaca
     1981 cattcgttcc ggaccttcgt tgctgctgga tctgatcaat gcgccacacc acgaacaagc
     2041 aacttcataa gcgggtttcg agttcatggg ttggttatcg ccttgattat ttatattgct
     2101 actcacgctc agcgttatag acaaatctcg ttccagctta tgcgcgcgcc ccggcatcaa
     2161 tgactaacct cgaacgactt caacagatcg gaattcgccg catcgggacg ccgacccgtg
     2221 gctttcgtta tctgcctacg aatggacgtt tggtaaaagg cgatctcgat cggattcgtg
     2281 cgttgcgcat accgccggcg tggactgacg tgttcatcaa tcccgcggca aagggacgag
     2341 tgcaggcgat cggtaaagac gcggcgggac gttggcaata cctgtatcac gccgatcaca
     2401 cgaaagttca ggaggcccgc aagttcacac gactcgcgaa gtttgcgaag tcactgccga
     2461 agttgcgcgc gacgatttcc ggccatctgc gacagtccgg tcttgggcgt gaacgtgtgc
     2521 tcgcagcgat cctgcgcgtt ttatcgacgt gttacatgcg gcccggaagc cagtcgtacg
     2581 cgagtgagca tgggagctat ggcattgcga cgttgcgccg taagcacgtc acggtgaaag
     2641 gcgatctgat cgagtttgat tttcccggga a
//
LOCUS       DASWTX010001094         1507 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_425619, whole genome shotgun sequence.
ACCESSION   DASWTX010001094 DASWTX010000000
VERSION     DASWTX010001094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1507
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_425619"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..363)
                     /locus_tag="VGD38_16695"
     CDS             complement(<1..363)
                     /locus_tag="VGD38_16695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729723.1"
                     /translation="MMSYQPRFRSAIWTTLVLLVSVPTSALAAPNVAVARTVEQNPTQ
                     QQTVAAVPAPTPPASLARGLDKQSDQGRQYGQPGFVGEPINLNVVNADVRDILNYITE
                     QYGVNFVIDASVTAVPVTV"
     gene            complement(538..1131)
                     /locus_tag="VGD38_16700"
     CDS             complement(538..1131)
                     /locus_tag="VGD38_16700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729724.1"
                     /translation="MSHEKNTSRLRFTASLLGAAMLLTSGIVVTTMAQEQTEKPAAKR
                     VSSGGRDPFRKYEPPKPTLKRVANQSPIPTIQDRISNYKAQKAAAMNARMPAPKPTTA
                     LLLSEIQVIGISRSPRGYAAIVEATPITLTYVIYPGEPFYDGQRVAIEDNRLVFRRET
                     VFTDGRRERSVEYKQLRQPAPVNSVPVPSGSVATAKP"
     gene            complement(1150..>1507)
                     /gene="pilO"
                     /locus_tag="VGD38_16705"
     CDS             complement(1150..>1507)
                     /gene="pilO"
                     /locus_tag="VGD38_16705"
                     /inference="COORDINATES: protein motif:HMM:NF016253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA];
                     GO_process: GO:0043683 - type IV pilus assembly [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="type 4a pilus biogenesis protein PilO"
                     /protein_id="HEY0729725.1"
                     /translation="LQGIQDRARNNGLVLTRFNPKEDVQQDNYSGKKIEVSVVSGFAG
                     LRAFFEQLAHYQRIVSITNFELKQLDKQSLTKTVDARFDLTAYYVSSERLQNQPKPAK
                     GASGGAAPAAAPQPAK"
BASE COUNT          286 a          410 c          474 g          337 t
ORIGIN      
        1 caccgttacc ggcaccgcgg taaccgaagc atcgataacg aagttcactc cgtactgctc
       61 ggtgatgtag ttgaggatgt cgcggacgtc ggcgttgaca acgttcaggt tgatcggctc
      121 gccgacgaaa cccggttgtc cgtactgccg tccctggtcc gactgcttgt ccagaccgcg
      181 cgcgagactt gcgggtggag ttggcgccgg aaccgcagcg acagtctgct gctgggttgg
      241 gttctgctcg acggtacgag caacggcaac attaggggca gccaaagcac ttgtcggcac
      301 gctgacaagc aggacgagcg tggtccagat ggctgatctg aatcgaggct gatacgacat
      361 cattccctcc ttagggggat tttcagaact cgccgcccgc gcactaacgc tcgattgccg
      421 gggcaactaa agcgcgcgcc gcactgaact cggccagttc cggtttgtca aaggagcgct
      481 gattctttgc ggaagggcag cgcggtaagg gtctggttta caaagcaaac cagagagtta
      541 cggcttcgcg gttgcaacgg agccgctggg cacgggcact gaattcaccg gagctggctg
      601 tcgcagttgc ttgtattcga cacttctttc gcgacggcca tcggtgaaca cggtttcacg
      661 acggaacacc aggcggttgt cttcaatggc gacccgttgg ccgtcgtaga aaggctcgcc
      721 cggatagatc acgtaggtaa gtgtgatagg cgttgcttcg acgatcgcgg cgtatccgcg
      781 cggcgagcgg gagattccga tcacctgaat ctcgctgagc aacaaagcgg tggtgggctt
      841 gggggcaggc atgcgcgcgt tcatcgcggc ggctttctgt gccttgtaat tactgatccg
      901 atcctgaatc gtcggaatcg gcgactggtt cgcaacccgc ttgagcgtcg gcttcggtgg
      961 ttcgtatttt ctgaacggat cgcggccgcc ggaagatacg cgtttcgccg ctggcttttc
     1021 cgtctgttcc tgggccatcg tcgtgacgac gataccgctc gtaagcaaca tcgcagcgcc
     1081 gagcaatgaa gccgtgaacc ttagtctcga agtgttcttt tcgtggctca tgatgattct
     1141 cttcagaagt tattttgcgg gctgaggagc agcagcgggg gcggcgccgc cggacgcgcc
     1201 tttggcgggc ttaggttgat tctgcaagcg ctcagatgag acgtagtaag cagtcagatc
     1261 gaaacgcgcg tcgactgttt tcgttaacga ctgcttgtcg agctgcttga gttcgaaatt
     1321 ggtgatcgaa acgatgcgct gatagtgcgc caactgttcg aagaacgcgc gcagaccggc
     1381 aaagccgctg acgacgctga cctcgatctt cttgccactg tagttgtcct gctgaacgtc
     1441 ttccttcgga ttgaaccgcg taagcaccag gccgttgttg cgcgcgcggt cctggattcc
     1501 ctggagg
//
LOCUS       DASWTX010001095         1852 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_186432, whole genome shotgun sequence.
ACCESSION   DASWTX010001095 DASWTX010000000
VERSION     DASWTX010001095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186432"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1852)
                     /locus_tag="VGD38_16710"
     CDS             complement(<1..>1852)
                     /locus_tag="VGD38_16710"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0729726.1"
                     /translation="DGGDYNNGFFGEQLGGQRAAIDITLEAVKEFQVVATGASAEFGR
                     TAGGVINVITKSGTNDIHGSLFHFQRLEALTANTSDGRPLQDFHREQYGGTFGGPFKK
                     DRAFYFVAFEGINENLTRPNLSEQIGTTPCPVAVPTIIANEGLINANEDCQRLALINF
                     MRVTRNQEEGLPVSHKINNQALLAKVDFKLNDANQLAISYNFVHSKNTNQTFDVATYG
                     NSANGIEGPSKINVLRANLYTTVSPTKLNELNFSYSRELRPRSAIPSNIPADTAMGFV
                     TTFRFGNPFFLEPNVDELLWRTQVKDNFSIVSGDHTLKFGGDWLHTLNDQVFRGFFTG
                     RYIFGTVTGFLRYASPAAPGGFGPNTIGCSNGTFVTAPATCTGAGVTPTGSPLLLYLQ
                     GAGLTGPATDAAGASNITNDDFALFAQDSWRIRPNFTLNYGLRWEAQMFPEPVVPPSQ
                     TAYGIFLNDPRFPSDGTLPDQKTQFQPRLGFAWDISKQGKSVLRANAGIFYARQNMLS
                     QVGSITTNGVQQQTIVGVTPVWPNIVTPPSTVTPCVSGGITNPFPCFSGVRVFSRDYA
                     NPRIYTVNVGFEQEVANDWSLYLDFIHSKAVHLTRFLNVNRNNFFAPFLGE"
BASE COUNT          393 a          482 c          555 g          422 t
ORIGIN      
        1 ctcgccgagg aacggcgcga agaagttgtt acggttgacg ttcagaaagc gagtcaagtg
       61 gacggctttc gagtgaatga aatccaggta gagtgaccaa tcgtttgcga cttcctgttc
      121 gaaaccgacg ttgaccgtgt agatgcgcgg attggcatag tcgcggctaa agacgcgcac
      181 gccgctgaag cacggaaacg gattagtgat tccgcctgac acgcacggcg tcacagtgga
      241 tggcggcgtt acaatgttgg gccaaacggg agtcacgccg acgattgtct gctgctggac
      301 gccgttagtc gtgattgaac caacctgcga cagcatgttt tgccgcgcat agaaaatgcc
      361 cgcgttggcg cgcaatacag acttgccttg tttggagatg tcccacgcaa agccgagccg
      421 cggttgaaac tgcgtcttct gatccggcaa cgtgccgtca gacgggaaac gcggatcgtt
      481 caggaagatt ccgtaggccg tttgactcgg cggcacgacg ggttccggga acatctgtgc
      541 ttcccaacgc aggccgtagt tgagcgtgaa gttgggccga attctccacg agtcctgagc
      601 aaaaagcgcg aagtcgtcgt tggtgatgtt cgacgcaccg gcagcgtccg tggctggacc
      661 agtcaaaccc gcgccctgca agtagagcag cagtggacta ccggttggtg ttacgcctgc
      721 gcccgtgcag gtagccggcg cagttacaaa cgttccattc gaacatccga tcgtgtttgg
      781 accaaaacct cccggcgcgg ccggcgaagc gtagcgcagg aagccggtca cggtgccgaa
      841 gatgtagcgt cccgtgaaga aaccccggaa cacctgatcg ttcagcgtgt gcagccagtc
      901 gccgccgaac ttcaacgtgt ggtcgccgga aacgatggaa aaattgtctt tcacctgcgt
      961 gcgccacaag agctcatcga cgtttggctc gaggaagaac ggattgccga agcggaacgt
     1021 cgtcacaaat cccatcgccg tatcagccgg tatattcgaa ggaattgccg aacgcggacg
     1081 cagctcgcgg ctgtaagaga agttgagctc gttcagtttt gtcggcgaga cggtggtgta
     1141 aagattggcg cgtaagacgt tgatttttga aggtccctcg atgccgttgg ctgaattgcc
     1201 gtatgtcgca acgtcgaagg tttgattcgt gttcttcgaa tggacgaagt tatacgaaat
     1261 cgccagttga tttgcgtcgt tgagtttgaa atcgaccttc gctaacaacg cctggttatt
     1321 gatcttgtga ctgacgggca agccttcttc ctgattgcga gtgacacgca tgaagttgat
     1381 caaggcaagt cgctggcagt cttcgttggc gttaattagc ccttcgttgg cgatgattgt
     1441 tggtaccgcg accgggcaag gcgtggtgcc gatctgttcg ctcagatttg gacgcgtcag
     1501 gttttcattg atgccttcga aggcgacaaa gtagaacgct ctgtctttct tgaatggacc
     1561 accgaacgtt ccgccgtact gctcgcgatg aaaatcctga agcggtctgc cgtctgatgt
     1621 atttgccgtt agcgcttcga gccgttggaa gtgaaacagg ctgccgtgaa tgtcgtttgt
     1681 gcctgatttt gtgatgacgt tgataacgcc gcctgcagtg cgaccaaact cagcgcttgc
     1741 tccggtagcc accacctgaa actctttcac tgcttccagc gtgatgtcga tcgccgcgcg
     1801 ttgaccgccg agctgctcgc cgaagaaccc gttgttgtag tcgccgccgt cg
//
LOCUS       DASWTX010001096         2848 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_143343, whole genome shotgun sequence.
ACCESSION   DASWTX010001096 DASWTX010000000
VERSION     DASWTX010001096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2848
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143343"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..282)
                     /locus_tag="VGD38_16715"
     CDS             complement(<1..282)
                     /locus_tag="VGD38_16715"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEY0729727.1"
                     /translation="MNDFVQRIAKLSPKKQELLGRLFEKEQLDVARVVITPRKRSASV
                     PLSFAQQRLWFLDQLEPNSSVYNIPDTHSFDGPLNLKALERSLSEIVRRH"
     gene            complement(279..>2848)
                     /locus_tag="VGD38_16720"
     CDS             complement(279..>2848)
                     /locus_tag="VGD38_16720"
                     /inference="COORDINATES: protein motif:HMM:TIGR01733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEY0729728.1"
                     /translation="RGKAVDLELSVEVRELLKQVGRENAATLFMTLMAAFNVLLWRYT
                     QQDEILVGTPIANRNRAETESLIGFFVNTLVLRSKLDHHITLREFLAQVRETTVGAYG
                     HQDVPFEKLVEELQPERSLNRQPLFQVLFTLQVAEEMKLGGLELNWVDTKSDVTKFDL
                     SLFMTETETGLYSWFEYNTDLFDESTIARMLKHFHTLLEEIAANPDARLSELSLMTGE
                     EREQIKAWNQTQSEYERDQCVHQLVELQAARRPDALAVVFGEKLISYGELNRRTNQLA
                     RYLRRHGVGLETRVGVLMQRSADWIVALLGILKAGGVYVPLDGSYPAQRLRFMVEDAE
                     VKVLLTENGQPELDAAEVVNLDQAWEQLSTENAENLEHVALPENLAYLMYTSGSTGQP
                     KGVGVTHQAINRLVRNTDYVKFEESDRVAQTSNASFDVATFEIWGALLNGSRLVVLEK
                     DTVLSPAELGRQLMDQQISVLFLTTALFHLMAQGRPEIFASLTYVIFGGDAADAQFVQ
                     RVLENGKPRHLVNGYGPTEGTSFTTSYEAQEKDIGARTTPIGRPLPNTDAWVMDRETQ
                     MVPVGVAGELHIGGDGLARGYLPRPALTAEKFVPHPYSAEPGARLYRTGDLVRYQDDG
                     NIEFLGRMDQQVKVRGFRVELGEIESSLNQYWAIVESVVVAGKDASGETRLIAYVVPE
                     EGVEPTSAEIWTFLQEKLPSYMLPSVFVTIKELPLTPNGKVDRRALPVPEQIGDEVGP
                     DFIAPRTEMEEMVAEIWRQTLGITQVGVGSNFFDLGGHSLLGTRVMSQIRENCGIELP
                     LRVLFEAPTIAGLARRLEEAQPKTTELGRILSMLENMENISEEEVTALLAQTEAGSK"
BASE COUNT          581 a          899 c          722 g          646 t
ORIGIN      
        1 gtgacggcgc acgatctcgc tcagactgcg ttccagcgcc ttgagattca gtggtccgtc
       61 gaaggagtgc gtgtcaggaa tgttataaac cgaactattc ggttccaact ggtccaaaaa
      121 ccacaatcgc tgttgcgcaa acgacagcgg cacggacgcg gatcgcttcc gcggcgtgat
      181 gactacccgc gcgacgtcga gctgttcctt ctcaaagaga cggcccaaca gctcttgttt
      241 cttcggcgac agcttcgcga tgcgttggac gaaatcgttc acttcgaccc ggcttccgtt
      301 tgcgccagca gcgcagtgac ttcttcttcc gaaatgtttt ccatgttctc gagcatgctg
      361 aggatgcgtc ccagttcagt cgttttcggc tgtgcttcct cgagcctgcg agcgagtccg
      421 gcgatagtcg gcgcctcaaa cagcacgcga agcggcaact caatgccgca gttctcacgt
      481 atctggctca tgacccgcgt gcccagtagc gagtgcccgc caagatcgaa aaagttcgag
      541 ccgactccga cttgcgttat cccgagagtc tgacgccaga tttcagcgac catctcttcc
      601 atctcagttc gtggagcgat gaagtctgga ccaacctcgt ctccaatctg ctccggcacg
      661 ggcaacgcgc gccgatctac ctttccattt ggcgtcaatg gaagctcttt gatcgtgacg
      721 aaaaccgagg gcagcatgta cgacgggagc ttttcctgaa ggaaggtcca tatttccgcc
      781 gacgtcggct caacaccttc ttcagggacg acgtaggcga ttaatcgcgt ctcaccggat
      841 gcatctttcc cggcaactac gaccgattcc acgatggccc aatattgatt tagtgacgac
      901 tcgatttcac cgagttcaac cctgaagccc cgcaccttca cctgctggtc catgcgcccg
      961 agaaactcga tgttcccatc gtcctggtaa cgcacgaggt cgcctgtccg gtagagccgc
     1021 gcgcccggct cggcactgta gggatgaggc acaaacttct ccgccgttaa cgccggccgc
     1081 ggtaagtatc cgcgcgccaa gccatcaccg ccgatgtgta actctcccgc gacgccaacc
     1141 gggaccatct gcgtttctcg atccattacc cacgcgtctg tattcgggag cggccgtccg
     1201 atcggagttg tgcgcgctcc gatgtctttc tcttgcgctt cgtacgaggt tgtgaagctt
     1261 gttccctcag ttggtccata accattgacc aggtgccgcg gtttcccgtt ttccaacacc
     1321 cgctgtacga attgcgcgtc cgcggcgtcg ccgccgaaga tcacgtaggt gagggaagcg
     1381 aaaatctccg gccggccctg ggccatcaga tggaacaacg ccgtcgtcag aaacagcacg
     1441 ctgatctgtt ggtccataag ctgccgtccc aactccgccg gcgaaagcac cgtgtccttc
     1501 tccagcacga ctaaccggct gccattcagc agtgctcccc aaatctcgaa agtcgcgacg
     1561 tcgaacgatg cgtttgaggt ttgcgccact cgatcgctct cttcaaactt cacatagtcc
     1621 gtattacgca ccagccgatt gatcgcctgg tgcgtcaccc ctactccttt gggctggccg
     1681 gtcgagccgg atgtgtacat caggtaagcc agattttccg gtagcgcgac atgctcgaga
     1741 ttctccgcgt tctcggtgga caactgctcc catgcctgat cgaggttaac aacttccgcc
     1801 gcgtctaatt ccggctggcc gttctccgtc agcagcacct tcacttccgc atcttccacc
     1861 atgaagcgca agcgttgcgc cgggtaactt ccatccaacg gcacataaac cccacccgct
     1921 ttaagaattc ccaacagcgc gacaatccaa tccgccgatc gctgcatcag caccccgacg
     1981 cgtgtctcca ggcccacgcc atgccgccgc agataacgcg ctaattgatt agtgcggcgg
     2041 ttaagctcgc cgtagctgat cagtttttcc ccgaagacca ctgccagcgc atccggccgt
     2101 cgtgctgcct gcaactcaac caactgatga acacactggt cgcgttcgta ttcgctttgg
     2161 gtttggttcc acgctttgat ttgctcgcgt tcctctccgg tcatcaatga cagttcggac
     2221 aaacgcgcat ccgggttggc cgcaatttct tccagtaagg tatggaagtg cttcagcatt
     2281 cgcgcaatcg tcgactcgtc gaaaagatcg gtgttgtact cgaaccagga gtacaagccg
     2341 gtttccgttt cagtcataaa tagactcagg tcgaatttgg tgacgtcact cttcgtgtcc
     2401 acccaattca actcgagtcc gccgagcttc atctcctccg caacctgaag ggtaaacaac
     2461 acctgaaaca aaggctggcg gttcagactg cgctccggct gcaactcctc gacaagtttt
     2521 tcaaacggga catcctgatg cccgtaagcc ccgacggttg tttctctcac ttgggccagg
     2581 aactcacgaa gggtgatgtg atggtccaac tttgaacgca acacgagcgt gttcacaaaa
     2641 aagccgatca gactttcagt ctctgcgcgg ttgcgattgg cgatcggtgt gccgacgagg
     2701 atttcgtcct gctgcgtgta acgccacagg agcacgttga acgcggccat caacgtcatg
     2761 aaaagtgtcg ccgcgttttc ccggccgacc tgtttcaaca gctccctaac ctccacgctg
     2821 agctctaagt ccaccgcttt accgcgat
//
LOCUS       DASWTX010001097         1660 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_170688, whole genome shotgun sequence.
ACCESSION   DASWTX010001097 DASWTX010000000
VERSION     DASWTX010001097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1660)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1660)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1660
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170688"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1660
                     /locus_tag="VGD38_16725"
     CDS             <1..>1660
                     /locus_tag="VGD38_16725"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEY0729729.1"
                     /translation="TETTLSKLAYEVRAEDVERPSIPVGKPIRGSAVMIMDAAGKPCR
                     PGTVGEIYIRTPYRSFGYYGDEELTQKAFIRNPFSKDPNDLIHKTGDYGRLLEDGNLE
                     HLGRRDQQVQIRGVRVELGEVENLLRAHKDVTDVAVIDRDDADGNKFLVAYLTLTNGT
                     GAEQLRDYLSARLPQTMLPSAFVKLDQLPRTLNGKVDRKALPALELIESGQDPETELL
                     TPVEEIVAGIWCEVLRLPAISRNRNFFNVGGHSLLATQVVHRVRETFKIELPVRSIFE
                     APTVAQLSRLIEAQLEKSAPGLNSRIEPVAREGNLPPSFAQQRLWFQEKLAHGTSTFH
                     IDLGMRLKGSMNLAALEQSFNEISRRHENLRTSFPVSEGEVTQVIHQPARLSIPVINL
                     ENLSAAERDEMDAKIAMCALERPFDLENGPLFRVALVRHSEDEYTLLCTLHHIISDGW
                     SRGILTREASALYEAFGQGVPSPLPQLKVQYADYAVWQRQRLQGEALERELEFWKEQL
                     AGAPPLLDLPTDRPRPPVQTYRGAAETFRLPLELSHRLKSLSHQR"
BASE COUNT          369 a          494 c          482 g          315 t
ORIGIN      
        1 taccgagacc acgttatcga aactcgctta cgaagtgaga gcggaagacg tggaacggcc
       61 ttcgattccg gtaggcaaac caatcagggg ttcggcggtg atgattatgg atgccgccgg
      121 caaaccctgc cgcccgggga cagtcggaga gatctacatt cgtacgccgt atcgttcgtt
      181 cggttattac ggcgacgagg aactgaccca aaaagcattc atccggaatc cgttcagcaa
      241 agatcccaac gacctgattc acaaaaccgg cgattacggc aggctcctcg aggatggcaa
      301 cctggagcac ctcggcaggc gcgaccagca ggtgcagatc cgtggtgtac gtgtagagct
      361 gggggaagtc gaaaacctgc tccgcgcgca caaggacgtg accgacgttg ccgtgatcga
      421 ccgcgacgac gcggacggga ataagtttct cgtggcttac ctgaccctga cgaacggcac
      481 gggcgccgaa cagttgcgtg actacttatc ggctcgcctg ccgcaaacga tgttgccgtc
      541 agcattcgtc aagctggacc aactgcctcg tactttgaac ggcaaggtcg atcgcaaggc
      601 actgcccgcg ctcgaattga tcgaatccgg acaagacccg gaaacggagc tactgacacc
      661 cgtcgaagag atcgtcgccg gcatctggtg tgaagttttg cggcttccgg caattagccg
      721 caaccgcaac ttcttcaacg tcggcggtca ctcgctgctg gccacacaag tggttcaccg
      781 ggttcgtgag acgttcaaga tcgagctgcc ggtccgcagc atctttgaag cgccaacggt
      841 ggcccaactc tcacggctaa ttgaggccca actcgaaaag agtgctcccg gtttgaactc
      901 gcgcatcgag ccggtcgctc gggaagggaa cttgccgcct tcgtttgcgc aacagcgtct
      961 ctggttccag gagaagctgg cgcacggcac gtcgactttt cacatcgacc tgggaatgcg
     1021 tttgaaaggg tcgatgaacc tggcggcgct ggaacagagc ttcaacgaaa tcagccgccg
     1081 tcacgagaat ctccgcacgt cgtttcccgt gagcgaaggt gaagtgacgc aggtcattca
     1141 tcagccggcg cggctctcga ttccggtcat caatctggaa aaccttagcg cagcagaacg
     1201 cgacgagatg gacgcgaaga tcgcgatgtg tgcactggaa cgcccgttcg atctggaaaa
     1261 cggaccactg tttcgcgtcg ccctcgtacg tcattcagaa gacgaataca cgctgctttg
     1321 cactctgcac cacatcatta gcgacggctg gtctcgcggc atattgacgc gagaagcttc
     1381 ggcgctttac gaagcatttg gccagggcgt accttcaccg ctgccgcaac tcaaagttca
     1441 atacgccgac tacgccgttt ggcagcgcca acgcctgcag ggcgaagcac tcgagcgcga
     1501 actggaattt tggaaagaac aattggcggg cgcgccaccg ttgctggacc tgccgaccga
     1561 tcgtccgcgg ccgccggtgc agacttatcg cggcgctgcg gaaacgttcc gtttgccgct
     1621 cgagttatcc caccggctca aatccctgag ccaccagcgc
//
LOCUS       DASWTX010001098         6565 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_124482, whole genome shotgun sequence.
ACCESSION   DASWTX010001098 DASWTX010000000
VERSION     DASWTX010001098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6565
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124482"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            48..5267
                     /locus_tag="VGD38_16730"
     CDS             48..5267
                     /locus_tag="VGD38_16730"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEY0729730.1"
                     /translation="MFDSSVKQLVQLLQGHELCVIPEEVRIDGDELAGYIRLQGIDVL
                     DCTPSQLRLLLASGLFDGESIAPGLVLVGGEAIDEETWQSLAAASQTTFFNVYGPTEC
                     TVDTTVHRIALSSGEPLIGTPLNNVQTYLLDSHDQPVPLGVYAELLIGGAGVARGYLT
                     EPDLTAERFVPDPVSGKPGARLYRSGDRVRHRSGGEISFLGRLDHQVKIRGHRIELGE
                     VEAALRKDPQVHEAVVVEREERRGDKRLVAYIVADPQAGLSLPTLQKNLREQLPDYMM
                     PSGWVVLEELPLTPSGKVDRAALPEPGRMRLDTGQSFIAPPTMIEEALAAIWREVLNL
                     EYVRKDDNFFWLGGHSLLATRIISRIRESFQVELPVRTLFESPTLTDLAAAIETVMRS
                     GASIAAPPLKSAPYAERMPLSYAQQRLWLMNQLMPGSNAYNLPAEMVIDPGVNAGALE
                     QSLSEILRRHEALRTTFPLSGNQAVQRINPATRVQLPLVDLRRLKADEQPVVAERLRH
                     EAALQSFDLEAGPLVRAAVVRSEEHSLFLMNMHHIVSDGWSMGVLLHEMETLYQSYAQ
                     GLPSPLPELEVQYADFARWQRDWLLDDVLQAELTFWKGQLEGAPTLLQLETDRPRQLM
                     RAARGAHHPVVFSEEVSQWLREFHRQEGATLFMTLMAGFHALLWRYTGQSDILVGTPI
                     AGRTRVELETMIGFFVNMIPIRTSFGGRPTFRELVNQVRDSALAAYTHQELPFDKLVE
                     ELQPRRSPGRNPIFQAILAFQNAAPEMSMAKVSLPAGAPISADVKFDLEVHLSDTPAG
                     VTGSFVYSPDLFDPAFIGRMVYHFQRLFEQAMLEPDSDLSTLSLLDEAEYRQVVEEWN
                     DTAASVPEGCIHDVLLQQVAERPDAIAVESGDQQITYRALDERANRLAQRLRREGIGQ
                     ESFVAVMLERSADLIVSLLGVAKAGGVYVPLNLTDPEKRLEFILEDAGIRTLVTTKAL
                     AQNVANKGLSLVYVDELGEETSENLQSTSVPDNLAYLMYTSGSTGTPKGVGITHGNVV
                     GFVKTANFADLNADEVMMHIAPASFDASTFEIWGALLNGARLVVYPPSVPSLHELGEI
                     VSRTQVTTLFLTTGLFHQFVDSHVSNIGAVRQLLTGGDALSPTLLNKGLEQIENVQIV
                     NCYGPTESTVMACCYRVERDRPATSVPIGRPVSNTRLYVVNALQPAGIGERGELLIGG
                     HSLGRGYHNRPDLTADRFMPDPYGPEPGQRLYRSGDAARYLSDGLLQFLGRIDDQVKI
                     SGFRIEPREIEAVLATHPALNAAVVVVREDTPGQKFLVAYVVSSSETTPANDELRAYL
                     KDRLPEYMVPSAFVPLEALPLTPHGKIDRAALPAPPVSLTRSGREYVAPQNDLQQQLV
                     DIWEELFKVHPIGITDNFFELGGHSLQMIMLVARVEERLGKRVAMAELFANPTIKYLA
                     ELVGHGRESLYQSLLVPLRVEGTKTPIFTPHSSGGNVWCYKELAQELGDDQPIYGVQP
                     SETEDGVLHDTKIEEMAASYVKAVRGFQPTGPYSLVGWSMGAVIAFEMARQLQEQGQE
                     IALLALIDAGAPEGEDAEYNWGFLLSIFAFDLGLTEAQVKQVVGKALPQMAQLRQLWV
                     EARKAKVVPAEMTLVEFRKLFDTFKIHANTMRRYRPEEFRGRLALFRAEEDVEEVMLR
                     NDPKYLDWKAQTEKITSPYKGWGRVASEGVDQYDVPGNHFSMLREPNVRILGEQLRQY
                     IQAAGARSNGSNQ"
     gene            5286..>6565
                     /locus_tag="VGD38_16735"
     CDS             5286..>6565
                     /locus_tag="VGD38_16735"
                     /inference="COORDINATES: protein motif:HMM:TIGR01194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_function: GO:1904680 - peptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic peptide export ABC transporter"
                     /protein_id="HEY0729731.1"
                     /translation="MGKLLKLMYVIAKWSKGIRHSRTLIVLAVLSSFLAGAGYTLLIA
                     LIKNALSNGLLSGPGLVGWFVVFCLAIPICGFAAQMMLLHLTSRAAYELRIQLSRRIL
                     AAPLRQLETLGPHRLLATISQDIGSVIELVTVLPQMLTQLAMMAGCLIYLGWLSWKLM
                     LIMLVYMAVGLLTHQLPLMRAFRYFRLLREQWDAMYKSFQGVIVGTKELKLNRRRREA
                     FLSQELEPAAAGLRDYGIRGNAIAMAVSNWGQILFFIFIGLLLFVTPLLINIGPQVLI
                     GYTLAVLFMITPVTMLLNQIPALERAYLAAERIEQLGFSLNDSKSESLAPVSSADVPW
                     RRLDMIDVTHSYRQDGDSSEFQLGPINLTIHPGELIFLVGGNGSGKTTLVKLLMGLYE
                     PESGEIRVDNKPVTMANRDDYRQKFSAVFFDFYL"
BASE COUNT         1358 a         1820 c         1975 g         1412 t
ORIGIN      
        1 atccggcgga tgcaggtccg cttcgcgtca gtgtcaacgc gccgttgatg ttcgattcgt
       61 ccgtcaaaca gttggtgcag ctccttcagg gacacgaact gtgcgtcatt cctgaagaag
      121 tgcgaatcga tggtgacgaa ctggccggtt acatcagact tcagggaatc gatgtgctcg
      181 attgcacacc ttcgcagttg agactgttgc tcgcgtccgg actgttcgat ggcgaatcca
      241 tcgcgccagg actggtgctc gtcggcggcg aagcgatcga cgaggagacc tggcagtcgc
      301 tggccgccgc ttcgcaaacg actttcttca acgtttatgg accaaccgag tgcactgtcg
      361 acacgactgt ccaccggata gctctttcat cgggcgagcc actgatcggc actcctttga
      421 ataacgtgca gacctacttg cttgactcgc acgatcagcc ggtcccgttg ggcgtgtatg
      481 cggagctctt gattggcggc gccggcgtgg ctcgcggtta cctgaccgaa cctgatctga
      541 cggccgagag attcgtgccg gatcctgtta gcggcaaacc cggcgcacgc ctgtatcgct
      601 ccggcgatcg tgtgcgccat cgctcgggtg gcgagatcag ttttcttggc cggttggacc
      661 atcaggtaaa gattcgcggt caccgcattg agcttggcga ggttgaagcc gctctgcgta
      721 aggacccgca agtgcatgaa gcagtcgtgg tcgagcggga agagcggcgt ggcgacaagc
      781 gcctggtggc ctacatcgtc gccgatccac aggccggcct ctcgttgccg acgctgcaga
      841 agaacctgcg cgagcagttg cctgattaca tgatgccgag tggttgggtg gtgctcgagg
      901 aattaccgtt gactccgagc ggcaaagtcg atcgcgcggc attgcctgaa ccgggacgca
      961 tgcgcctcga taccggtcag agtttcatcg cgccgccaac catgatcgag gaagcgcttg
     1021 cggcaatctg gcgcgaggtg ctgaatctcg agtacgtccg caaggacgat aacttcttct
     1081 ggctcggtgg ccactcgctg cttgcgacca ggatcatctc gcgcatccgc gagagttttc
     1141 aggtcgaact gccagtgcgc acgttattcg agtcgccaac gttgacggac cttgcggcag
     1201 ctatcgaaac agtgatgcgc tccggcgcga gtatcgcggc gccgccgctg aaatcagcgc
     1261 cgtacgccga acggatgccg ctctcctatg cgcaacagcg gctgtggttg atgaaccagt
     1321 tgatgccggg cagcaacgct tacaacctgc ctgcagagat ggtgatcgat ccgggagtta
     1381 atgccggtgc gctggaacag tcgctgagcg aaatacttcg ccgtcatgag gctttgcgca
     1441 ctacgttccc gctttccggc aaccaggcgg tgcaacggat caaccctgcg actcgggtgc
     1501 agttgccgct ggttgattta cgccggttaa aagcggacga gcaaccggtc gtcgccgaac
     1561 ggttgagaca cgaagcagca cttcagtcct ttgatcttga agcaggtcca ctggttcgcg
     1621 cggcggtggt gcgttccgaa gaacactcgc tgtttctgat gaatatgcac cacatcgtga
     1681 gtgacggctg gtccatgggc gtgctgttgc acgaaatgga aactctttac cagtcatacg
     1741 cgcagggctt gccgtcaccg ctgccggagc tggaagtgca atacgcagac tttgcgcgtt
     1801 ggcagcgtga ttggctgctc gacgacgtgt tgcaggcaga gctgacattt tggaagggac
     1861 aactcgaagg cgcgccgacg ctgttgcaat tggagacgga tcgtccgcgc caattaatgc
     1921 gtgcggcacg cggcgcacat catccggttg tcttctcgga agaggtctcg cagtggttgc
     1981 gagagtttca tcgtcaggaa ggcgcaacgc tgttcatgac gctgatggct ggattccatg
     2041 ccctcttatg gcgctacacg ggccagagcg acattctggt cggcactccg atagcgggcc
     2101 gcacccgggt cgagctcgaa acaatgatcg gatttttcgt caacatgatt ccgatcagga
     2161 ccagttttgg cggccgtccc acgttccgcg aattggtcaa tcaggtgaga gattcggcgc
     2221 tcgccgctta cacgcaccag gaactgcctt ttgacaaact ggtggaggag ctacagccga
     2281 ggcgctcacc gggccgtaat ccgatcttcc aggcgatcct cgcgttccaa aacgccgcgc
     2341 cggaaatgtc gatggccaaa gttagtttgc ctgccggagc gccgatcagt gccgacgtca
     2401 agtttgatct ggaagtgcat ctgagcgaca cgccggctgg cgtgaccggc tcttttgttt
     2461 acagtcctga tctttttgat cccgctttca tcgggcgcat ggtctatcac ttccagcggc
     2521 tgtttgagca agcaatgctg gaacctgaca gcgacttgtc gacgctgtcc ctgttggacg
     2581 aagccgagta ccggcaggtc gtcgaagagt ggaacgacac cgccgcatcg gtgcccgagg
     2641 ggtgcatcca cgacgttctg ttgcagcaag tagcagaacg tccggacgcg atcgcagtcg
     2701 agtctggcga tcagcagatt acttatcgag cgttggacga gcgtgcgaac cgtctcgcac
     2761 aacgactgcg gcgtgaagga atcggccagg agagtttcgt cgccgtgatg ctggagcggt
     2821 cggcggatct aatcgtgtcg ttgctcggag tcgcgaaagc cggcggcgtc tacgttccgc
     2881 tcaacctgac ggacccggag aaacgcctcg agttcatcct cgaagacgca ggcatacgga
     2941 cgctcgtcac aacgaaagca ctcgcacaaa acgtggcgaa caagggtttg tcgctcgtgt
     3001 acgttgatga actcggcgaa gaaacctctg agaatctcca gagcacttcc gttccggata
     3061 acctcgccta cctgatgtac acctcaggtt caaccggaac gcccaaaggc gtgggcatca
     3121 cgcatggcaa cgtggtgggt ttcgtaaaga ccgccaactt cgccgatttg aacgcagacg
     3181 aggtcatgat gcacatcgcg ccggcatcgt ttgacgcttc gactttcgag atctggggcg
     3241 ccctgttgaa cggcgcacgg ttggttgtct acccgccgtc ggtaccgtcg ttgcacgagc
     3301 tcggagagat cgtcagccgt acgcaggtca ccactctatt tttgaccact ggattgttcc
     3361 accagtttgt cgatagccac gtgagcaata tcggcgcggt gcggcaactg ctcaccggtg
     3421 gtgacgcact ctcgccaacc ctgctcaaca aaggcctcga gcagatcgag aacgtgcaga
     3481 tcgtgaactg ctatggacca accgagtcga cggtgatggc gtgctgctat cgagtcgaac
     3541 gggatcgtcc ggcaacatcg gttccgattg gacggcctgt ctcgaacacg cgtctttacg
     3601 tagttaatgc cttgcagccg gccggcatcg gtgaacgagg tgagttactc atcggcggtc
     3661 acagcctggg acgcggttat cacaaccggc ccgatctaac tgccgatcgg tttatgccgg
     3721 atccatacgg ccccgaaccc ggacaacggc tataccggag cggtgacgcg gctcggtacc
     3781 tgagtgatgg actattacag ttcctcggcc gcattgacga tcaggtaaag atcagcgggt
     3841 tcagaatcga gccgcgcgaa attgaggcgg tgcttgcaac acatccggcg ctgaatgcag
     3901 cggtggtcgt ggtaagagaa gacacgccgg gccagaagtt cctggttgcc tacgtcgtct
     3961 ccagctccga aacaaccccg gcgaacgatg agttgcgggc ctatctaaaa gaccgtctcc
     4021 cggaatacat ggtgccgtcg gcgtttgtgc cactcgaagc actgccgttg acgccgcacg
     4081 gaaaaatcga ccgggctgca ctgccggcgc cgccagtctc actcaccaga tcgggacgag
     4141 agtacgtagc tccgcaaaac gatctgcaac aacaactggt cgacatctgg gaagagctgt
     4201 tcaaggttca tcccatcggt atcaccgaca acttcttcga actcggtggc cattcgttgc
     4261 agatgatcat gctggttgcg cgcgtcgagg aacggctggg caaacgcgta gcaatggcgg
     4321 aactgtttgc caatccaact atcaagtacc tcgccgaact agtgggccat ggtagggaaa
     4381 gcctttatca gtcgttactc gtaccgttac gcgtggaagg gacgaagaca cctatcttca
     4441 ctccacactc gagcggtggc aacgtctggt gttacaagga gcttgcgcag gaactgggag
     4501 acgatcaacc gatctatggc gtacagcctt cagagaccga agacggcgtg ctgcacgaca
     4561 caaagatcga agagatggcg gcgagctacg tcaaggcggt tcgcgggttc cagccaaccg
     4621 gaccttattc gctggtcggc tggtccatgg gtgcggtgat cgcgtttgag atggcgcgtc
     4681 agctccagga acagggacag gagattgcgc tgctggcgct gatcgacgcg ggcgcgccgg
     4741 aaggcgaaga cgctgaatac aactgggggt tcctgttgtc gattttcgcg ttcgatttgg
     4801 gattgaccga agcgcaagtg aagcaggtcg tcggcaaggc tttgccgcag atggctcaac
     4861 ttcgtcaact ttgggtggaa gcaagaaagg ccaaggtcgt tccggcagag atgactctgg
     4921 tcgagtttcg caagctgttc gacactttca agatccacgc aaacacgatg cgccgctacc
     4981 ggccggaaga gttccgcggc cgccttgcac tcttccgtgc tgaagaggac gtcgaggaag
     5041 tcatgttgcg taacgatccg aaatacctcg actggaaagc acagacggag aagatcacaa
     5101 gcccgtacaa aggctggggc agggtggcaa gcgaaggcgt cgatcaatac gacgttccgg
     5161 gcaatcactt ctccatgctt agagagccga atgtgcggat tctcggcgaa caactgcggc
     5221 aatatatcca agcggccggc gcgcgaagca atgggagcaa ccaataacag cctgaggttc
     5281 tactgatggg gaagctactg aaactgatgt acgtcattgc gaagtggtcg aagggaattc
     5341 gccactcgcg gacgttaatc gtgctcgccg ttctcagcag ttttctcgcc ggcgccggct
     5401 ataccttgct gatagcgctg atcaagaacg ccctctcgaa tggtttattg tccggtcccg
     5461 gattggtcgg ctggttcgtg gtgttttgtc tggcaattcc catttgcgga ttcgctgcgc
     5521 agatgatgct gcttcatctc acgtcccggg ccgcttacga actgcgcatt caactctcgc
     5581 gtcgaatcct tgccgcgccg ctacgacaac tggaaacgct tgggccacac cggctgctcg
     5641 cgaccatcag tcaggatatc gggagcgtga tcgagttagt cacggtgctg ccgcagatgc
     5701 tgacacagtt ggcgatgatg gccggctgtc tgatttatct cggctggctc tcgtggaaac
     5761 tgatgctcat catgctggtg tacatggcag tgggcctcct tactcaccag ttgccgctaa
     5821 tgcgcgcctt tcgctatttc cgtttgctgc gcgaacaatg ggacgcgatg tacaaatcgt
     5881 tccagggcgt aatcgtcggc acgaaggagt tgaaactgaa tcgccgccgg cgcgaggctt
     5941 ttctaagcca agagcttgaa ccggccgcgg cgggtcttcg cgattacgga atccgtggca
     6001 atgcgatcgc catggctgtt tcgaactggg gccagattct gtttttcatc ttcatcggct
     6061 tgttgctgtt cgttacgcca ttgctgatca atatcgggcc tcaggtgttg atcgggtaca
     6121 cactcgcggt gctgttcatg atcacaccgg ttaccatgct gctgaaccag ataccggcat
     6181 tggagcgagc gtatctggca gcggaacgga tcgaacagtt aggcttttca ctgaacgatt
     6241 ccaagtctga aagcctggcg cctgtttcca gcgccgatgt gccgtggcgg cggctggata
     6301 tgatcgatgt cacccactct taccgtcagg acggcgacag ttcggagttt cagttgggac
     6361 cgatcaatct cacaattcat cccggtgagt tgatctttct cgtcggcgga aacggcagtg
     6421 gcaagactac actcgtgaaa ttgctgatgg ggttgtatga acctgagtcg ggcgagattc
     6481 gggtagataa caaacccgtg acgatggcaa accgcgacga ttaccggcag aagttttcag
     6541 ccgtcttctt cgatttctat ttatt
//
LOCUS       DASWTX010001099         2437 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_275068, whole genome shotgun sequence.
ACCESSION   DASWTX010001099 DASWTX010000000
VERSION     DASWTX010001099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2437)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2437)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2437
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275068"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            114..1139
                     /gene="queA"
                     /locus_tag="VGD38_16740"
     CDS             114..1139
                     /gene="queA"
                     /locus_tag="VGD38_16740"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR00113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HEY0729732.1"
                     /translation="MLLSEFDFDLPSDLIAQQPLAERDASRMLVLDRQRQLWSDSQFR
                     NFTEYLRSNDVVVVNNSRVIPARLKGRREETGGQVEIFLVRELEPKVWEALVRPGGRL
                     KQGARVEFGEGKLIAEMVDEPGAELRRVRFHCEGSFDELLAGIGVTPLPPYIKKITTE
                     DRERYQTIYAKQRGAIAAPTAGLHFTPAVLREIRGRASLAEVTLHVGYGTFEPVRVDD
                     VDQHSVSAERFEISEATAAKINETRVKGGRVIVVGTTTMRALESSATLEGIVIPGAGE
                     AALTIKPGYKFRVADALLTNFHLPQSSLLILVSAFAGREFILNAYRHAVSERYRFYSY
                     GDCMFIL"
     gene            1200..1763
                     /locus_tag="VGD38_16745"
     CDS             1200..1763
                     /locus_tag="VGD38_16745"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEY0729733.1"
                     /translation="MAVLKKFRSRWWSQSDLPLDPQKKEKAATPSWGTSYDIRPLTIS
                     QLDECWRLDQRCFVDGEAYSRETFDYLLTAPESVAFRAVTTGGVMAGFVIGLIEPDHT
                     GHVTTVGVAPEHRRRNLAKRLMRQVEEGFRKRNVRLVRLEVRTLNTPAQQLYESLGYT
                     VTQRLPKYYSNGGDGLLMLKSLEDTKA"
     gene            complement(1780..>2437)
                     /locus_tag="VGD38_16750"
     CDS             complement(1780..>2437)
                     /locus_tag="VGD38_16750"
                     /inference="COORDINATES: protein motif:HMM:NF012255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GTPase domain-containing protein"
                     /protein_id="HEY0729734.1"
                     /translation="RQPVQLAQSTSHDPSHSSEEGYRALTFINYASREINCKIVYYGP
                     GLCGKTTNLQYIFDSTAPQARGKLISLATETDRTLFFDFMPLELGTVRGFKTRFHLYT
                     VPGQVFYDASRKLILKGVDGVVFVADSQEERMDANIESLYNLEENLRSQGYDLMKIPY
                     VLQLNKRDLNNIVTVDELAAELQRKGEPVIEAVAATGTGVFDTLKAVAKQVLTELRKG
                     "
BASE COUNT          557 a          648 c          678 g          554 t
ORIGIN      
        1 tcggtcggcg cggtcgtggc ggtgatgacg tggagttatg tttcgagttt gatcctgctg
       61 tttggcgcgc agctcacggc ggtctttcac tacgaacatc ctgcgtaaat cagatgctgc
      121 tttccgaatt cgatttcgat ctgccttccg atttaatcgc ccaacagcct ctcgccgaac
      181 gcgacgcgtc gcgtatgttg gtgctcgacc ggcaacgtca attatggtcc gactcacagt
      241 tcaggaactt caccgaatac ctgcgttcga atgatgtggt ggtcgtaaac aactcgcgcg
      301 tgattcccgc tcggttgaaa ggacgccgag aagaaacggg cgggcaggtc gagatttttc
      361 tagtccgcga gctggagccg aaggtttggg aagcgctcgt tagaccggga ggaagactca
      421 agcaaggagc gcgagtcgag tttggtgaag gcaagttaat tgcggagatg gttgatgagc
      481 ccggggctga gttgagacgg gtccgtttcc actgtgaggg ttctttcgac gaacttttag
      541 cggggatcgg agttacacct ctaccaccgt acataaaaaa aatcactaca gaagatcgcg
      601 aacgttacca aacgatctac gctaaacaac gtggcgcaat tgcggcgccg actgcggggt
      661 tgcattttac gcccgctgtt ttgcgtgaga ttcgggggcg cgcatcgctg gctgaagtca
      721 cgcttcatgt tggttatgga acgttcgaac cggtgcgcgt tgacgatgtg gaccagcact
      781 cggttagtgc ggaacgtttt gagatctcgg aagcaacagc cgcaaagatc aacgagacgc
      841 gagttaaagg cggaagagtg atcgtcgtgg gcactactac gatgcgtgca ctggagtcat
      901 ctgccacgct tgaagggatt gtcatcccag gcgcgggtga agcagcgctc acgatcaaac
      961 ccggttacaa gttccgcgtt gccgacgcgc tgctcacaaa ctttcacctg ccacagtctt
     1021 ccctgctgat cctcgtcagc gcattcgccg gacgcgagtt tatcctcaac gcttaccgcc
     1081 acgccgtcag cgaacgctat cgcttttaca gttacggcga ttgcatgttt attctctaga
     1141 actaataaaa ccccaatggt aaactaagac ggctcgctca atgtcgatgc aaaaacgtta
     1201 tggcagtact aaagaaattt cgatcccgct ggtggtcaca gtctgatctt cccctcgatc
     1261 cccagaagaa agaaaaggca gccaccccgt cctggggaac gtcctacgac attcgtccgc
     1321 taacaatctc ccaactcgac gagtgctggc gtctcgatca gcgctgtttt gtcgacggcg
     1381 aagcgtacag ccgcgagact ttcgattatc tgctcactgc tccggagtca gtcgcttttc
     1441 gcgcagtcac aaccggcggc gtcatggccg gctttgtgat cggactcatc gaacccgatc
     1501 acaccggaca cgtcaccacc gtcggcgtag cgccagaaca tcgtcgacgc aatctcgcca
     1561 aacgtttaat gcgacaggtt gaagaaggct tccgcaaacg aaacgtgaga ctcgtgcggc
     1621 tggaagtcag gaccctgaac acaccggcgc aacaactcta cgagagtctt ggttacacag
     1681 tcactcagag acttccgaaa tactattcaa atggcgggga cggtttgttg atgctgaagt
     1741 cgttggaaga tacgaaagcc tgacaacgtc tgactacgcc tagcccttcc gaagttccgt
     1801 caagacctgc ttagcaaccg ctttcaacgt atcaaaaact ccggtgcctg ttgccgctac
     1861 ggcttcaatc acaggctcgc ctttgcgttg caactcggca gcgagttcgt ccacggtaac
     1921 aatgttgttc aggtcgcgct tgtttagctg aagcacgtag ggaatcttca tcaggtcgta
     1981 gccctgagat ctgaggtttt cttcgaggtt gtaaagcgac tcaatgttcg cgtccattcg
     2041 ttcttcctga gagtccgcga caaacaccac gccgtcgacg cctttgagga tcagtttgcg
     2101 ggaagcgtcg taaaagacct gaccgggaac ggtgtacagg tgaaagcgcg tcttgaaacc
     2161 acgcacagta cccaactcga gcggcatgaa gtcgaaaaac agcgtccggt cggtttccgt
     2221 cgccagactg atgagcttgc cgcgagcctg gggggcagtg gagtcgaaaa tgtactgcaa
     2281 gttggtcgtc ttaccacaca agcctgggcc gtagtaaacg attttgcagt tgatctcgcg
     2341 tgaggcgtag ttgatgaaag tcaaggctcg gtaaccctct tcagacgaat gtgacgggtc
     2401 gtggctggtg ctctgcgcta gctgaacagg ttgtcga
//
LOCUS       DASWTX010001100         1546 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_106249, whole genome shotgun sequence.
ACCESSION   DASWTX010001100 DASWTX010000000
VERSION     DASWTX010001100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1546
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106249"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..627)
                     /locus_tag="VGD38_16755"
     CDS             complement(<1..627)
                     /locus_tag="VGD38_16755"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: protein motif:HMM:NF014499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004134 - 4-alpha-glucanotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HEY0729735.1"
                     /translation="MNFPRASGILLHPTSLPGPYGTGDLGPEAYKFVDFLVSAGQSLW
                     QVLPLGPTGYGDSPYACFSAFAGNTALISPERLNLPFHADKNELLRRAYQNYTKTTDT
                     NLRSAFETFAQREAHWLDDYALFRALKDAHNGVAWIDWEPALVRRTPSALARAREQLR
                     EEIEAQMFYQFLFFEQWFALKKYANERGVKIVGDLPIFVAHDSADVWTN"
     gene            complement(624..>1546)
                     /locus_tag="VGD38_16760"
     CDS             complement(624..>1546)
                     /locus_tag="VGD38_16760"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HEY0729736.1"
                     /translation="TLDGWFNDDLPDMNQEEPEVARYEIQNALWWAGVTGIDGIRQDT
                     IQYMPRFFIRDLSNALHRQYPKLWMVGEVFERDAAHTAFFIGGHTGWDGIDTKLDSVF
                     DFALWNTSLNVFTNKLPVRALREQLKYDALYPDPSKLTVLANNHDTPRFMSLEGADIT
                     GAKLHTAFILSVRGIPQLYYGEEIAMEGGEDPDNRRDFPVSAFEARTRKAKEREMLDW
                     TRDWIRLRREHSAIRRGKLIDLFYDDNVYVFARQDSTETVVIAVNRHDKEREVSLPFR
                     ALTPLLGKIRVINGASVTLPPKSAAAFKAS"
BASE COUNT          333 a          454 c          431 g          328 t
ORIGIN      
        1 gttggtccaa acatcagccg aatcatgggc cacaaagatc ggcagatcgc cgacgatctt
       61 tacgcccctt tcattcgcat acttcttcaa cgcaaaccac tgctcgaaaa agaggaactg
      121 ataaaacatc tgcgcttcga tctcttcgcg tagttgttcg cgcgcgcgtg caagcgcgga
      181 aggcgtgcgt cgcacaagcg ccggctccca atcgatccac gcgacgccgt tgtgcgcatc
      241 tttcaacgcg cggaagagcg cgtagtcgtc gagccagtgc gcttcgcgtt gggcgaaggt
      301 ttcgaaggcg ctgcgaaggt tcgtgtcggt cgtctttgtg tagttttgat aggcgcggcg
      361 taagagctcg ttcttgtccg cgtgaaatgg caggttcagc cgttcagggc tgatcagcgc
      421 cgtgttaccg gcaaacgccg agaaacacgc gtacggcgag tcgccataac ccgttggtcc
      481 aagcggcaac acttgccaca gactctgccc ggcgctcacg agaaaatcga cgaacttgta
      541 cgcctctggt ccaagatcgc cggtgccgta cggtcccggc aacgacgtcg ggtgaagcag
      601 aatcccactg gctcgcggaa agttcatgat gctttgaagg ccgccgcaga tttaggcgga
      661 agagttacac ttgcgccgtt gattacacgg atttttccaa gcagcggcgt gagcgccctg
      721 aatggcagcg aaacctcgcg ctccttgtcg tgccggttga cagcgatgac gacagtctct
      781 gtgctgtcct gccgcgcgaa gacgtaaaca ttgtcgtcgt aaaagagatc gatcagtttt
      841 ccacggcgaa tcgccgagtg ctcgcgccgc aaacgaatcc agtctctggt ccagtcaagc
      901 atctcgcgct ctttcgcttt gcgcgtgcgc gcttcgaaag cactgaccgg aaagtcgcgg
      961 cggttatccg gatcttcccc gccctccatc gcgatctcct cgccgtaata aagctgcgga
     1021 ataccgcgca cactcaggat aaaagccgtg tgcaacttcg cgccggttat gtccgcgccc
     1081 tcgagcgaca taaaccgcgg cgtgtcgtga ttgttcgcga gcaccgtgag ctttgaagga
     1141 tcgggataca gcgcgtcgta cttcaactgc tcgcgcagcg cacgcaccgg cagcttgttc
     1201 gtaaaaacat tgagggacgt gttccaaagc gcaaaatcga agacggaatc gagcttcgta
     1261 tcgatcccgt cccaacccgt gtggccgccg atgaaaaatg ccgtgtgcgc agcatcgcgc
     1321 tcaaatactt ctcccaccat ccacagcttt ggatactgcc ggtgaagcgc atttgagaga
     1381 tcgcgaatga aaaatcgtgg catgtactgg atcgtgtcct gacgaatacc gtcgatgcca
     1441 gtcacgcccg cccaccacaa agcgttttga atttcatagc gcgcgacctc gggctcttcc
     1501 tgattcatgt cagggagatc gtcgttgaac cagccgtcta gagtgt
//
LOCUS       DASWTX010001101         2313 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_143422, whole genome shotgun sequence.
ACCESSION   DASWTX010001101 DASWTX010000000
VERSION     DASWTX010001101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2313
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143422"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..628
                     /locus_tag="VGD38_16765"
     CDS             <1..628
                     /locus_tag="VGD38_16765"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="asparagine synthase C-terminal domain-containing
                     protein"
                     /protein_id="HEY0729737.1"
                     /translation="EPLFWGGAVVYDETFKPRVLSQSLRDRMNGLSSLRVVEPYLKQI
                     EQERPDSDFLARMTYLELKLRLPELLLMRVDKITMATSVEARVPFLDHHLVEYALGLP
                     RSLKVEGTTGKHILKRALEDLLPHDLLYEPKRGFGAPVREWFRGRDLRALFDERLMNS
                     TMRRRDLLDYGFVARMLDEHRSGGKDWGFHLWALLNLSLWYERWIDRP"
     gene            625..1893
                     /locus_tag="VGD38_16770"
     CDS             625..1893
                     /locus_tag="VGD38_16770"
                     /inference="COORDINATES: protein motif:HMM:NF014051.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HEY0729738.1"
                     /translation="MKDRKFSADVAWTLATRLLMIVNSVAAGIIVAHWLGAKGVGELA
                     VVNVAVATIVQLGSFGLPSSNTYFIAKDRTHFRAAAINSLLFAVVIGSVLAVALSGLA
                     SVRPDWFGFGPTELIRIAAVQIPFLLVTLIGLNILLALGKLREFNLLDLVSQSFLLIN
                     ALLVLVLLRQGLDVLVTLNTIASVLVSLVVLVLLVAAGKKLVESRWRADAALLRRMIT
                     YGLKFHISTLAGAIIFRADLLVVNHFRTPEEAGVYSVAAQFGMMLMLLPSVIATLLFP
                     RVTAEQDAHGETTWQVTKHTAVIMLVCCLAAVPVSFLLPLVYGAAFSEATMLLLILLP
                     GVYLIGLESVLVQHFSALGLPRTIPVYWIVTLLVNLVLVFALVPQLGAYGAAIASTVS
                     YALIFALVAFYFFTTTRRSVMATARGSLRG"
     gene            1890..>2313
                     /locus_tag="VGD38_16775"
     CDS             1890..>2313
                     /locus_tag="VGD38_16775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729739.1"
                     /translation="MKVVLLALSGDSARCHAKVVELYPQASIETISRGEFETGSLGQR
                     LSLLRSRRPDVFAIGTERLAWQRGQNLFMLFGALAGAREVIMIDSHNGWVRRTRGDLI
                     AGAPFRLGGEAFSGAIDMAQSRRELNRLERAVKTFDQRL"
BASE COUNT          372 a          618 c          757 g          566 t
ORIGIN      
        1 tgagccgctg ttttggggcg gtgcggttgt ttacgatgag acgttcaagc cgcgcgtgtt
       61 gtcgcagtca ctgcgtgacc gaatgaatgg tctttcgtcg ttgcgcgtcg ttgagccgta
      121 cctgaaacag atcgagcagg agcgccctga ttcagatttt ctcgcgcgca tgacgtacct
      181 ggaactgaaa ctgcgcttac cggaactttt gctgatgcgc gtcgacaaga tcacgatggc
      241 gacgagtgtc gaggcgcgcg tgccgtttct ggaccatcat ctggttgaat atgcgctcgg
      301 attgccgcgc tcgttgaagg ttgaaggcac gacaggcaag cacattctga agcgcgcgct
      361 ggaggatctt ctcccgcacg atctgcttta cgagccgaag cgtggtttcg gcgcgcccgt
      421 gcgcgagtgg tttcgcggaa gggatttacg ggcgttgttt gacgagcggc tgatgaattc
      481 aacgatgcgt cgtcgagatc ttttagacta cgggttcgtg gcgcgaatgt tggacgagca
      541 tcgcagcggg ggcaaggact ggggctttca tttgtgggcg cttttgaatc tgagcttgtg
      601 gtacgagagg tggatcgacc gcccgtgaag gatcgaaagt tttcagccga cgtcgcgtgg
      661 acgctcgcca cgcggctgct gatgatcgtc aacagcgttg cggcgggaat catcgtcgcg
      721 cactggctgg gcgcgaaagg cgtcggcgaa ctcgcggtcg tcaacgtcgc cgtggcgacg
      781 atcgtgcaac tcggaagctt cggcttgcct tcttcgaaca cgtacttcat cgcgaaggac
      841 cgcacacact ttcgggctgc cgcgatcaac tctttacttt tcgcagtagt aatcggttcc
      901 gttttggcgg tcgcgctcag tggtcttgca tcggttcgtc ccgattggtt cggcttcggt
      961 cccacggaac tgatccgcat cgcggcggtg caaatccctt tcctgttagt cacgctgatc
     1021 ggtctcaaca ttcttctcgc gctcggaaag ctgcgcgagt tcaacctgct ggatctcgtg
     1081 agccaatcgt ttcttttaat caacgcgcta ctggtcctcg tcctcttgcg ccaggggctt
     1141 gacgtgctgg tgacgctgaa cacgatcgcg agcgtgttgg tcagtctcgt ggttctcgtg
     1201 ctgcttgtcg ccgcggggaa gaagcttgtc gagtccagat ggcgcgcgga tgcggcgttg
     1261 ctgcggcgca tgattacgta cgggctcaag tttcacatct caacactcgc cggcgcgatc
     1321 atttttcgtg cggacctgct ggtcgtgaat cactttcgca ctccggaaga agccggtgtt
     1381 tacagcgtgg cggcgcagtt tggaatgatg ttgatgttgc tgccgagcgt gatcgcgacc
     1441 ttgctgtttc cgcgtgtgac cgccgagcag gacgcgcatg gcgagaccac gtggcaggtc
     1501 acgaaacaca cggcggtgat catgctcgtt tgttgtctcg ccgcagtgcc ggtgagtttc
     1561 ctgttgccgc tggtttatgg ggcggctttc tcggaagcaa ccatgttgtt gttgattctg
     1621 ctgccgggtg tgtatctcat cgggctcgag tcggtgctgg tccagcattt cagcgcgctc
     1681 gggttgccgc gcacgatccc ggtttactgg atcgtgacgc tgctcgtgaa cctggtgctt
     1741 gtgtttgcgc tggtgccgca gttgggcgcg tatggggccg cgattgcttc gaccgtgagt
     1801 tacgcgttga tctttgcgct tgtggcgttc tatttcttca ccactacgcg gcggtcggtg
     1861 atggcgacgg cgcgcgggag tttgcgtgga tgaaagtcgt gctgctcgcg ctcagcggcg
     1921 actccgcgcg ttgtcacgcc aaagtcgttg agctctatcc gcaagcgtcc atcgaaacga
     1981 tctcgcgcgg tgaatttgaa accgggagtt tgggtcaacg gctgtcgttg ttgcgctcac
     2041 gccgcccgga tgtttttgcg atcgggaccg agcggctcgc gtggcaacgc ggacagaacc
     2101 tgttcatgct cttcggcgca ctcgccggtg cgcgcgaagt gatcatgatc gacagtcata
     2161 atggatgggt gcgcagaacg cgcggcgatc tgatcgcggg cgcgccgttc aggttaggtg
     2221 gtgaagcgtt tagcggcgcg atcgacatgg cgcagtcgcg ccgcgagttg aaccggctcg
     2281 aacgcgcggt gaagacgttc gatcagcggc ttc
//
LOCUS       DASWTX010001102         3680 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_233278, whole genome shotgun sequence.
ACCESSION   DASWTX010001102 DASWTX010000000
VERSION     DASWTX010001102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3680
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233278"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..613)
                     /locus_tag="VGD38_16780"
     CDS             complement(<1..613)
                     /locus_tag="VGD38_16780"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004181 - metallocarboxypeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family zinc carboxypeptidase"
                     /protein_id="HEY0729740.1"
                     /translation="MKLRTPVLLLLFAFIAYAPTARSIRPVSVADVPMPSDVLGFTPG
                     DDRKLASWSQIIEYFEQLDRASDRVVFETLGQTSMGKPFVMATISSPDTLAKLDEYKQ
                     IQAQLADPRKLGPLATRDRKAAGLIARGKTIVLITCGIHSTEVGSYLSSTLIAHRLAS
                     SNDAEIQNILTNTIVLLVPSLNPDGVDIVKNWYEKTLGTPYEGT"
     gene            752..3310
                     /locus_tag="VGD38_16785"
     CDS             752..3310
                     /locus_tag="VGD38_16785"
                     /inference="COORDINATES: protein motif:HMM:NF015148.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0035673 - oligopeptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006857 - oligopeptide transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HEY0729741.1"
                     /translation="MSSETVGTNVGANEYPDRVAVAAPKETNPLLATFRPYIPAAVKI
                     RELTPLPLIVGTLLGMIFGASSLWLVLKVGLTVSASIPVAVISISLFRLLSKVGVREA
                     TILENNVVQTAGSAGESIAFGVGVTMPAIMILGFDLEFTRVMLVATMGGLLGILMMIP
                     LRRALIVQQHGILKYPEGTACAEVLKAGASPESRAAADPVYRAKAEASDEASSGAKTI
                     FTGFGIGLVYQIAMAALKGWKDVPSKVFGAPFKAGSLAAEISPALLGVGYIIGPRIAS
                     IMCAGGVLAYLVLIPAIKFFGEGMTTALTPGTVPIAEMGPDDIRGAYVLYIGAGAVAA
                     GGIISLFRSLPTIWHGLKGGLSDLRGGQSASSNLPRTDQDLSMKVVVGGVLVLIAMIV
                     ILPQLHLQFNLLGAILIIAFGFLFVTVSSRLTGEIGSSSNPISGMTVATLLLTCLIFL
                     IVGWSGPSYYVTALSIGGIVCIAASNGGTTSQDLKTGFLVGATPRYQQIAILIGALAS
                     ALILGPILLRLNDQSTVYVPQTTFRAVENGPQLDGAAAAALPAYTETAQPPSGGGNFR
                     LLKNEAATGLVGGLEPGEYLVDGSGKVVQRVERNFPATLKPDMASLGPAEPVKGTGLV
                     TPDPTLYRTWHKVDEQNGAPGKYLVDDQGNIKYFVDPGINGTHRVAPDGSSVSKYDAP
                     KATLMSYIIKGILNQQLPWGLVLLGVMIAVVLEMAGIPSLAFAVGVYLPLSSSSPIFI
                     GGMIRWLVDKYLRNKLKGREMTEEEFVAETDKSPGVLMASGYIAGGALAAVFIAFFAG
                     LWKERSDLIEHWSRENNPFFAGDWANVLSLLPFMVLMVLLYLVGREKLLAPKRR"
     gene            3392..>3680
                     /locus_tag="VGD38_16790"
     CDS             3392..>3680
                     /locus_tag="VGD38_16790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729742.1"
                     /translation="MLQRTQTVVCLLVLIVLAGSSSALAQNPQRTPTETTRFFYQMLR
                     EKKFREAFMISIYRSAIDGLSAQEFEELRPDFEKMALAVSERIPQTIDISGE"
BASE COUNT          691 a         1044 c         1116 g          829 t
ORIGIN      
        1 cggtcccttc gtacggtgtg ccgagagtct tctcgtacca gttcttcacg atgtccacgc
       61 cgtcgggatt cagcgaagga accagcagca cgatcgtgtt cgtgagtatg ttttgaatct
      121 ccgcatcgtt tgacgacgcg agccggtgcg cgatcagcgt gctcgagaga tacgaaccga
      181 cttcggtcga gtgaatgccg cacgtgatca gcacgatcgt tttgccgcga gcgatcaaac
      241 cggctgcttt gcgatcgcgt gttgcgagtg gtccgagttt acgcggatcg gcgagctgcg
      301 cctggatctg tttgtactcg tcgagtttcg ccagggtgtc aggcgaactg atcgtggcca
      361 ttacgaacgg tttgcccatc gacgtctggc cgagcgtctc gaaaacaacg cggtcactcg
      421 cccggtctaa ctgctcgaaa tactcgataa tctggctcca cgaagcgagt ttccggtcgt
      481 cgccgggtgt aaacccgagc acgtctgacg gcatcggaac atcagctacg gagaccggcc
      541 gaatcgaccg cgctgtgggc gcgtaggcga taaatgcaaa gagcagtagc aggacgggtg
      601 ttcggagttt catccggcgc agtttaccat caaaaatgcg caaaaaggcc cgtagaagcg
      661 cttgccgagc gcgttctgcc cgtgtaaagt agcgagcgtt tcaaaccccg cgcactcccc
      721 gttgtggaaa attcgttgga ggtcaacccg gatgtcttct gaaaccgtcg gtacaaacgt
      781 cggtgcaaat gagtatccag atcgagttgc agtcgctgct ccaaaggaaa ctaatcctct
      841 cctcgcaacc ttccggccgt atattccggc cgctgtaaag attcgcgagc tcacgccgct
      901 gccgttaatc gtcggtacgt tgctgggaat gatcttcggc gcgtcttcgt tgtggctggt
      961 gctgaaagtc ggtttgaccg tcagcgcttc gattcccgtc gccgttatct cgatcagtct
     1021 tttccggctg ctcagtaaag tcggcgtgcg cgaggctacg attctcgaaa acaacgtcgt
     1081 gcaaaccgct gggtctgcgg gtgagtcgat cgctttcggc gtcggcgtga cgatgccggc
     1141 gatcatgatc ctgggtttcg accttgaatt cacgcgcgtg atgctcgtcg cgacgatggg
     1201 cggactgctc ggcatcctga tgatgatccc gctgcgccgc gcgctgatcg tgcaacagca
     1261 tggcatcttg aagtatccgg aaggcactgc gtgcgcggag gtgttgaagg caggtgcgtc
     1321 accggaatca cgagcggctg cggacccggt ttacagggcc aaagccgagg cttcagacga
     1381 agctagttca ggcgcgaaga cgatctttac tggtttcggt atcggactcg tctaccagat
     1441 cgcgatggcc gcgcttaagg gttggaaaga cgtgccgagc aaagttttcg gcgcgccgtt
     1501 caaagccggt tcgctggccg cggagatctc gccggcgttg ctgggtgtcg gttacatcat
     1561 tggaccgcgc atcgcttcga tcatgtgcgc gggcggcgtg ctggcctacc tggtgctgat
     1621 tccggcgatc aagtttttcg gtgaaggcat gacgacggcg ctgacgccgg gcaccgtgcc
     1681 gattgccgaa atgggaccgg acgacattcg cggcgcttat gtgctttaca tcggcgcggg
     1741 cgcagtggct gcgggcggca tcatcagcct gtttcgttcg ttgccgacga tttggcacgg
     1801 tttgaagggc ggtctcagcg acttgcgcgg cggacagtca gcgagctcga atttgccgcg
     1861 aacggatcag gacctctcga tgaaggtcgt ggtgggcggc gtgctcgtgc tgatcgcgat
     1921 gatcgtgatc ctgccgcagc ttcacctcca gtttaatttg ctgggcgcga ttctcattat
     1981 cgctttcggt tttctgtttg tgacggtttc gtctcgtctc actggcgaaa tcggttcgtc
     2041 gtcaaacccg atctcgggca tgaccgtggc gacgttgctg ctgacgtgtt tgatcttctt
     2101 gattgtcggc tggagtggac caagctacta cgttaccgcg ctctcgattg gcggtatcgt
     2161 ttgtatcgct gcttcaaacg gcggcaccac ttcgcaggac ctgaagacgg gtttcctcgt
     2221 cggcgcgacg ccgagatatc agcagatcgc gattctcatc ggcgcgctcg cgtcggcttt
     2281 gatcctcggt ccgatcctgc tccggcttaa cgaccagagc acggtctacg taccgcaaac
     2341 tactttccgc gcggtggaga acggtccaca actcgacggc gcagcagccg cagcgcttcc
     2401 tgcttacacg gaaaccgcgc aaccgccaag tggcggcggc aacttccgct tgctgaagaa
     2461 cgaagccgca acgggtctcg tcggtggtct cgaacccggt gaatatctcg tcgacggttc
     2521 aggcaaggtc gtgcaaagag tcgagcgcaa tttcccggcg actctcaagc ccgatatggc
     2581 gagccttgga ccagcggaac cggtaaaggg cacgggactg gttacgcccg atccaaccct
     2641 ctatcgcacc tggcataagg tcgacgagca gaatggcgct ccgggcaaat acctcgtcga
     2701 cgatcagggc aacatcaagt acttcgtcga tcccggtatc aacggcacgc atcgcgtcgc
     2761 gcccgacggc tcgtcagttt cgaaatacga cgcgccgaag gcgacgctga tgtcctacat
     2821 catcaagggc attctgaatc aacaactgcc gtggggcctc gtgctgctcg gcgtgatgat
     2881 cgccgtcgtg ctcgagatgg ccggcattcc atcgctcgcg tttgcggtcg gtgtttacct
     2941 gccgttgtcg tcgtccagcc cgatcttcat cggcggtatg attcgctggc tcgtggacaa
     3001 gtacctgcgc aacaagctca agggccgcga gatgacggag gaagagtttg tcgccgagac
     3061 tgacaagagc cccggcgtgt tgatggcttc cggttacatt gccggcggcg cgttggcggc
     3121 ggtgttcatc gcgttcttcg cgggtctgtg gaaagagcga agcgacctga tcgaacactg
     3181 gtcgcgcgaa aacaatccgt tctttgccgg cgactgggcc aacgtgctct cgttgcttcc
     3241 gttcatggtg ttgatggttc ttctctacct cgtcggtcga gagaaactcc tcgcgccaaa
     3301 gcgaagatag gaccaagccg tagtctcgat tcactcaagg cgcgctgcta atcaagggcg
     3361 cgcctttcaa acaaactgag gtctcttctc gatgctgcaa cgcactcaaa ctgtcgtttg
     3421 tctcctcgtg ctgattgtgc tcgctggttc gtcgtctgca ctggcccaga acccgcagcg
     3481 gacgccaact gagaccacgc gtttcttcta ccagatgctg cgcgaaaaga agtttcgcga
     3541 ggcgtttatg atctcgatct atcgctcggc gatcgacggc ttgtcggcgc aggagtttga
     3601 ggagttgcgg cctgacttcg agaagatggc tctggctgtc agtgaaagaa tccctcaaac
     3661 gatcgacatt tccggcgaac
//
LOCUS       DASWTX010001103         2030 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_251967, whole genome shotgun sequence.
ACCESSION   DASWTX010001103 DASWTX010000000
VERSION     DASWTX010001103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251967"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            125..>2030
                     /locus_tag="VGD38_16795"
     CDS             125..>2030
                     /locus_tag="VGD38_16795"
                     /inference="COORDINATES: protein motif:HMM:NF024491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HEY0729743.1"
                     /translation="MLVPRRLLLLFLALFLFPVINTHAQERLCDTAFEDCRAPLWSLI
                     DRETQGIDVAFWFMQDDSYATKLINRFRAGVPVRVLVDPRANPTYAGNEQVLNMLRDA
                     GIPMRYKLTDGILHWKMMLFAGQGKVEFSGANYSGHFFVPSAANSNYIDEAIYFTDDP
                     AVVNSFKTKYDDVWTNTVDYGNFANITGPLTRKYPTFAIDPEMNFPPSQNSSQDYILR
                     TQQRFSAETQKIDVIMYRITNQSFTDMTIAAVNRGVPVRLIHEPDEYRNLARQWDSWN
                     VDRMYMAGVQIKMRKHLGLNHQKSVLLYGQGMTIFGSSNWTGPSGNFQLEHNYFTTKS
                     WFFNWFVDQFERKWNSTTENEAFVPLPPNAPANAAPANGAIAQPTTLLKLRWEGGPWA
                     HKYDIYFGTTPNPPLYLENVSTIQSGAVSGQPLLDSGSVDDGNQEVFTIPVTLQEGTT
                     YFWRIVGKTMANQTAAGPTWSFVTAGSTPAPPAPTGLTATAMSQTRIDLAWNASGGAT
                     GYRVEKSSNGSSGWNEIAQLNSSQTTYSDTSVLQQQTWFYRVRALNTGGFSPYSNVAN
                     ATTPGSPPPSGNDIVLWAAEAPTRVGAWSVVSDGTAAGGSRIANADAGTPKKTVSANP
                     PDYFEMTFNAP"
BASE COUNT          469 a          588 c          536 g          437 t
ORIGIN      
        1 gtagaacata aagggtcgag agctgccgtc tccccactga catgctcttt ggcagtgaac
       61 ctttacgtct tttcaggata caaagtggtt tcaacaataa actggctctc ggctctataa
      121 aaatatgcta gtccccagac gactattact tctctttctt gcactctttc tttttccggt
      181 cattaacacg cacgcccagg agcgtctctg cgataccgcg tttgaagact gccgcgcgcc
      241 tttgtggtcg ctcatcgata gggaaaccca gggaatcgac gtcgctttct ggttcatgca
      301 ggacgattcg tatgcgacca agctgatcaa tcgattccga gcgggtgttc cggtacgcgt
      361 gctggttgac ccgcgcgcca acccgaccta tgccggcaat gagcaagtgc tcaatatgtt
      421 aagagatgcc ggcattccga tgcgctacaa actgaccgat ggcatcctgc actggaaaat
      481 gatgctgttt gccggtcagg gcaaagtcga attcagcggc gccaactatt ccggtcactt
      541 cttcgttccc agtgcggcaa actccaacta catcgacgaa gcaatctatt tcaccgacga
      601 tccggcagtc gttaacagct tcaaaaccaa atatgacgac gtctggacga acactgtcga
      661 ttacggaaac ttcgccaaca tcacgggtcc actgacgcga aaatatccga cgttcgcaat
      721 cgatccggag atgaacttcc cgccctcgca aaattcgtcg caggactaca ttttgcgcac
      781 acagcagcgg ttcagtgccg aaacgcaaaa gatcgacgtg atcatgtatc gcatcacgaa
      841 tcagtctttt accgatatga ccatcgcggc ggtaaatcgc ggtgttcccg tccgcttgat
      901 tcatgagccc gatgaatatc gcaatctcgc gcggcagtgg gactcctgga acgtcgaccg
      961 catgtacatg gccggtgtgc agatcaagat gcgcaagcac ctgggtctca atcaccagaa
     1021 gtctgtgctt ttgtacggtc agggcatgac gattttcggt tcgtcaaact ggaccggccc
     1081 gtccggaaac ttccagctcg aacacaacta tttcacgacg aagtcgtggt tcttcaactg
     1141 gttcgtagac cagttcgaac gcaaatggaa ctcgacgact gaaaacgaag cctttgtgcc
     1201 attgccgccc aacgcgcctg ctaatgcggc tccggcaaac ggtgcgatcg cccaacccac
     1261 gacgctgctg aagctgcgat gggagggcgg cccgtgggcg cacaagtacg acatctattt
     1321 cggtacgaca ccgaatccgc cgttgtatct cgaaaacgtg agcactattc agagtggcgc
     1381 ggtgtccggc caacccctgc tcgacagcgg ctctgttgac gatggcaatc aggaagtatt
     1441 tacgatcccg gtaacacttc aggaaggcac gacttatttc tggcgcatcg tcggcaaaac
     1501 aatggcgaat caaaccgccg ctggtccgac ctggagtttt gtgacggctg gttccactcc
     1561 tgctccgccc gcgccgacgg gattgactgc gacggcgatg tcgcagacgc gcatcgatct
     1621 cgcgtggaac gcctccggcg gcgcgaccgg ctatcgagtt gaaaagagct cgaacggttc
     1681 gagtggctgg aacgaaatcg cacagcttaa ttcgagtcaa accacttact cggatacgtc
     1741 agtgttgcaa cagcagacct ggttctatcg cgtgcgcgcg ttgaacacgg gtgggttttc
     1801 accgtacagc aacgttgcga acgccacgac accgggatca cctccgccat ccggaaatga
     1861 catcgtactc tgggcggctg aagcgccgac acgggtcggg gcgtggtctg tcgtctcgga
     1921 cgggacagcc gcgggcggca gccggatcgc taatgccgac gcaggcaccc cgaagaagac
     1981 ggtatctgct aaccccccgg attatttcga aatgactttc aacgctcccg
//
LOCUS       DASWTX010001104         3787 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_299801, whole genome shotgun sequence.
ACCESSION   DASWTX010001104 DASWTX010000000
VERSION     DASWTX010001104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3787
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299801"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..762
                     /locus_tag="VGD38_16800"
     CDS             <1..762
                     /locus_tag="VGD38_16800"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF012493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY0729744.1"
                     /translation="GFLPAIRRVLALLPAKRQTLLFSATMSSSIEQLARSTTKDPKLV
                     EVNTRGQAASLVEQTAYYVGQESKTALLLELLEKEREPFERVLIFTRTRRGAERLSHV
                     LAARDHTVKRIHADRTQSQREAALKAFSEGRARILVATDIAARGLDISSVSHVVNYDV
                     PSAPEDYVHRIGRTGRAGNQGKAITIVAPVDELSMRAIERLTGQSVRRIVPEGFSKSA
                     NVSVVRSVQQPAARISAPRTPSTRSFRPRRASRYA"
     gene            851..1600
                     /locus_tag="VGD38_16805"
     CDS             851..1600
                     /locus_tag="VGD38_16805"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY0729745.1"
                     /translation="MKTVLITGCSSGYGLEIARHFHAQGWNVIATMRTPREDVLPRSE
                     RVRVLPLDVTKPESIGAAIEASGPIDVLVNNAGIGVVGAFEATPMATIREVFETNTFG
                     VFAITQAVVPQFRARRSGVVVNVTSSATLTPMPLAAVYTASKMAVEAFTASVAFELEY
                     FNVKVKLVEPGYGPNTNFAVNGAERMQGLIPEAYAPFAEPIFASFAQPAATTTASDVA
                     EVVYRAANDSSGQLRFPAGADAVVLAMAQSR"
     gene            1614..2543
                     /locus_tag="VGD38_16810"
     CDS             1614..2543
                     /locus_tag="VGD38_16810"
                     /inference="COORDINATES: protein motif:HMM:NF024260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEY0729746.1"
                     /translation="MEDRPDPLAAIISLLRPQTVLSKIVSGAGQWSIRKPRYEDPAFC
                     LLLNGSCFLEPDGSGALELNEGDFVLLPEMPSFTLASDLNLSPTPVALDHSRESHYGT
                     ESAPATMRMLGGYFRFDRANAQLLVKLLPPVIHIKREEPEATRVRRIVELIGEETIAD
                     RPGRGLILERLVEVLLVEALRFRSTSAAREEQGLLAGLSDPALAHTLREIHVDVARRW
                     TVEQLARSAGMSRAVFAERFSRKIGMPPMQYLLEWRMALAKNLLRGERPSLADVADRV
                     GYQSASAFSTAFTRLTGRTPSDFARDENSIKFR"
     gene            2752..>3787
                     /locus_tag="VGD38_16815"
     CDS             2752..>3787
                     /locus_tag="VGD38_16815"
                     /inference="COORDINATES: protein motif:HMM:NF025314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4214 domain-containing protein"
                     /protein_id="HEY0729747.1"
                     /translation="MPAGAQGQGQRVGQPRRDKPEGALPDLEEVQRESQNEREAPAAI
                     PSTLRSPKVPLEPWNGRRVGDHEPQIKKDQVLRAHARRRFNSPPPSVLDDQFVQNFFT
                     WTVSRAPGASELTYWNDQLRVAYAQGQLSLKLAAVEFGKTLFESAEYAARNRNDHWYV
                     YDLYKTFLMRDPDASGWAYWESVVPINGRVNVRRAFEEAPEFAGVLASIVPNGSATAN
                     AASLISARVDAHNQPGRGMLSRDAGWSVPLLSLPGRNGLDLGLGLSYSSMIWTRSGPY
                     LHFDEDNGFPSPGFRLGFPSVQRGVFDAQRGKNAYLLITASGQRVELLQVGSSNVYES
                     ADSSYLQLSDN"
BASE COUNT          741 a         1046 c         1165 g          835 t
ORIGIN      
        1 ggctttttgc cggcgatccg gcgcgtgctt gcattgttgc cggcaaagcg gcagacgctc
       61 ttgttttcgg cgacgatgtc atcgagcatc gagcaactcg cgcgttcgac aacaaaagat
      121 ccgaagctcg tggaggtaaa cactcgtggg caggcagcgt cgctcgtcga gcagacggct
      181 tactacgtgg gccaggaatc caagaccgct ctcttgctcg aactgcttga aaaagagcgc
      241 gaaccgtttg aacgcgtgct gatctttacg cggacgcggc gaggagcaga gcggctttcg
      301 cacgtgcttg cggcacgcga tcacacagtg aaacgcattc acgccgatcg tacgcagtcg
      361 caacgcgaag cagcgttgaa agctttcagc gaaggccgcg cgcggatctt ggtcgcaacg
      421 gacatagccg cacgcggttt ggacattagc tcggtgtcac acgtcgtcaa ttacgacgtg
      481 ccctcggctc ccgaggatta cgtgcaccgc atcgggcgca cgggcagggc cggcaaccag
      541 ggcaaagcga tcacgatcgt ggcgccggtt gacgagttgt cgatgcgtgc gattgagcgg
      601 ctcacgggac aatcggtccg gcgcatcgtg cctgaaggtt tttccaagtc cgcaaacgtt
      661 tcggtcgttc gctctgtgca acagccggca gcgcgtattt cagctccacg taccccatcg
      721 acccgctcgt ttcggccacg ccgcgcctca cgctacgcct aagacacact tccaatatca
      781 agacgatcag taacgtattc aagacgatgc gctattgatc gtcctgaatg gcggcgttat
      841 cttgcctgcc atgaagacag tgctaattac aggttgctcg tccggatatg gacttgagat
      901 cgcgcgtcac tttcacgcgc agggttggaa cgtaattgcc acgatgcgaa cgccgcgcga
      961 agacgttttg ccgcgttcgg aacgtgtgcg cgtgttaccg cttgatgtga caaagcccga
     1021 aagcattggg gcggcgatcg aggcgagtgg cccgatcgac gtgcttgtta acaacgcggg
     1081 catcggcgtc gtcggcgctt ttgaagcgac accgatggcg acgatacgcg aggtgtttga
     1141 gacgaacacc ttcggcgtgt ttgcgataac gcaggcggta gtgccgcagt ttcgcgcgcg
     1201 gagatcgggt gtggtcgtga acgtgacgtc gagtgcgacg ctgacgccga tgcctttggc
     1261 cgccgtgtac actgcgagca agatggctgt cgaagcgttt accgcgtctg tcgctttcga
     1321 gctcgagtat ttcaatgtga aggtcaagct cgtcgaaccc ggttacggtc cgaacacgaa
     1381 cttcgcagtc aacggcgcag aacggatgca agggttgatt cctgaagcgt acgcgccttt
     1441 cgcggagccg atcttcgctt cgtttgccca gccggccgcg acgacgacag cgtctgacgt
     1501 tgctgaagtt gtgtatcgcg ccgcgaacga ttcatccggt caacttcgat ttcccgcggg
     1561 cgccgacgcg gtggtgctcg cgatggctca gtcgcgatag ttctgtctga agaatggaag
     1621 atcggccgga tccgcttgcc gcaatcatct ctctgctaag gccgcagacc gtcctttcaa
     1681 agatcgtgag cggcgcaggg cagtggagca ttcgcaagcc gcgttacgaa gatccggctt
     1741 tctgtctgct tctcaatggt tcgtgttttc tcgaacctga cgggagcggc gcgcttgagc
     1801 tcaacgaagg cgacttcgtt ctgttgcccg agatgccgag cttcacgctc gccagcgatc
     1861 tcaatctcag tccgacgccg gtagcactcg atcactcacg cgaaagtcat tacggaaccg
     1921 agtcagctcc ggcgacgatg cgcatgctcg gcggttattt ccgtttcgat cgtgcaaatg
     1981 cgcaactgct tgtaaaactc ctgccgcccg taatccacat caagcgcgaa gagccggaag
     2041 cgacgcgcgt gcgtcgcatc gtggaattga tcggtgaaga aacgattgcg gatcgtcccg
     2101 gtcgaggttt gattctcgaa cggctcgtcg aagtattgct tgtcgaggca cttcgttttc
     2161 gttcaacgtc cgcggcgaga gaagagcagg gcttgctcgc tggactttcg gatccggcgt
     2221 tggcgcacac gcttcgtgaa attcacgtcg acgtagcgcg acgctggaca gtcgaacaac
     2281 tcgcgcgaag cgcaggtatg tcgcgtgcag tctttgccga acgcttctcg cgcaagattg
     2341 gaatgccgcc gatgcaatac cttctcgaat ggcgcatggc gttggcgaag aacctgctgc
     2401 gcggcgaacg tccttcgctc gccgatgttg cagacagagt tggttatcaa tccgcgagtg
     2461 ccttcagcac agcattcaca cgcctcaccg gccgcacacc aagcgacttt gcgcgcgacg
     2521 aaaattctat aaaatttcgt tgacacaaaa tttgggtttg agtagattgc gggctggtcc
     2581 aataattagc cggagcgtgt aacctctccc ggagcacgca ttaactgttt tagcttagtt
     2641 cagagtaaaa ctattatgtc tcctcacttg tctaactggt ccaccttccg gaccgttttc
     2701 gcaatcacga ttgcagtttc gttgttattg gcttcaacgg tggtgtggtc tgtgcctgca
     2761 ggcgcgcagg gccaggggca gcgtgtaggc cagccgcggc gggacaagcc tgaaggcgcg
     2821 ttgccggatc tggaggaagt gcagcgtgag tcgcagaatg agcgtgaagc gccggctgcg
     2881 attccttcca cgctgcgttc tccaaaggtg ccgctggagc cgtggaatgg aaggcgcgtt
     2941 ggcgatcacg aaccacagat caagaaggat caagtgttgc gggcgcacgc gagacgacga
     3001 ttcaattcgc cgccgcccag tgtgctcgac gatcagtttg tgcagaactt cttcacctgg
     3061 accgtctcgc gcgcgccggg cgcgagcgag ttgacctatt ggaacgacca gttgcgcgtg
     3121 gcttatgcgc aggggcagtt gtcgttgaag ctggcggcgg tggagtttgg gaagacactg
     3181 tttgaatcgg cggagtatgc ggcccgcaat cgtaacgatc actggtacgt ttacgatctc
     3241 tacaagactt ttttgatgcg tgacccggat gcctcgggtt gggcttactg ggaaagtgtg
     3301 gtgccgatca acggccgcgt gaacgtgcgc cgggcatttg aagaagcgcc ggagttcgcc
     3361 ggtgttctgg cgagtattgt tccgaatggt tcggcaacgg caaatgccgc atcgctgatc
     3421 agcgcgcggg tggacgcgca caatcaaccc ggccggggca tgttgtcgcg tgatgcgggg
     3481 tggagtgtgc cgctgctgag tttaccggga cgcaacggtc tcgacctcgg tctggggctg
     3541 tcttactcct cgatgatctg gacgcgttcc ggtccttacc tgcacttcga cgaagacaat
     3601 ggtttcccca gtcccgggtt tcggcttggc tttccgagtg tgcagcgtgg cgtctttgac
     3661 gcgcagcgcg gaaagaatgc gtatctcctg atcacggcca gtggtcagcg agtggaactg
     3721 ctccaggtag gttcttcgaa cgtctacgag tcggctgatt cctcttactt acagttatct
     3781 gataaca
//
LOCUS       DASWTX010001105         1672 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_233307, whole genome shotgun sequence.
ACCESSION   DASWTX010001105 DASWTX010000000
VERSION     DASWTX010001105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1672
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233307"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1355
                     /locus_tag="VGD38_16820"
     CDS             <1..1355
                     /locus_tag="VGD38_16820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729748.1"
                     /translation="SPLEMFVSITRATNQLVSQNGSDVPDLSATMLRVIDDHARTAAD
                     SFRWRMIHGALSPSNMDMSGAMLDLPTQSTQPRTAPIFMLDYVQSVFGTEHRERGFHL
                     AEMQRRILRTTDVSARIHFNLKWINVSNQMDVDYNRYLEIKMLNAAGLKTHVAQRIQQ
                     TTKLAGHFTDVLAAMAVLKNPGKACVARKMVELSVVDIFNLLANVPADIFANRDLKES
                     VLEHLRPVYKGNRFQVQARKRRIEELAEKFAIVYRALLRVAENYYPSRAEMERSIRAR
                     AAFENQPLDALYCAPLLEELTKAIAEYKATGNAQIISDAIDSRITRSLRSVDGLLARG
                     NAPRTIRGITYSVRGDKLHVSIPVEAQGNLFTTAVSGLDRLTKRQIERLRYRFTTDNQ
                     ETFHDARARLVYDDQLGAIIDFGDLETTTPVGTLEGYFFATDRRTRLFSDYVFAVTDL
                     "
     gene            1415..>1672
                     /locus_tag="VGD38_16825"
     CDS             1415..>1672
                     /locus_tag="VGD38_16825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729749.1"
                     /translation="MPTLSKQNVTDVPTTFVADPFMIHDGSWHMFFEVLLTSDKGEIG
                     LATSDNGLDWTYQQIVLREEFHLSYPYVFKWQDTYYMIPETL"
BASE COUNT          378 a          498 c          464 g          332 t
ORIGIN      
        1 gttcgccgct ggaaatgttc gtgagcatca cgcgcgccac caaccaactg gtatcgcaaa
       61 acgggtcaga cgtgccagac ctgagcgcaa cgatgctgcg cgtcatcgac gatcacgcgc
      121 ggaccgcggc tgactcgttt cgttggcgca tgattcacgg cgcgctcagt ccgtcgaaca
      181 tggacatgag cggcgcgatg ctcgacttgc cgacgcaatc gactcagccg cgcacggcgc
      241 cgatcttcat gctcgactac gtgcagtcgg tctttggcac tgagcacagg gaacgcgggt
      301 ttcatctcgc cgagatgcag cggcgcatat tgcgaacgac cgacgtgtcc gcacgcattc
      361 acttcaacct gaagtggatc aacgtctcga accagatgga cgtggattac aaccgctatc
      421 tcgagatcaa gatgctcaac gctgcggggc tcaagacgca cgtggcccaa cgcattcagc
      481 aaacgacgaa acttgcgggt cactttacgg atgttctagc ggcgatggcg gtgctgaaga
      541 atccggggaa agcttgtgtc gcgagaaaga tggttgagct gtcggttgtc gatattttca
      601 atctgctcgc aaacgtgccc gcggatattt ttgccaaccg cgatctgaaa gagagcgtgc
      661 tggagcactt gcggccggtg tacaagggga acaggtttca ggtgcaggcg aggaagcgaa
      721 ggatcgagga actggcggag aagttcgcca tcgtctatcg cgcgttgctg cgtgtcgccg
      781 agaactatta tccgagccgg gcagagatgg agcgctcgat acgagcgcgt gcggcatttg
      841 agaatcaacc gctcgatgcg ctgtactgtg ctcccctatt ggaagaactg acgaaagcga
      901 tcgccgagta caaagcgacc ggcaacgcgc agatcatcag cgacgcaatc gacagccgca
      961 tcacacgctc gctgcgcagc gtcgacggct tgttagctcg cggcaacgcg ccgcgcacta
     1021 tcagaggcat aacgtactct gttcgcggcg ataaactaca cgtgagcatc cccgtcgaag
     1081 cgcaaggcaa tctctttact accgccgttt ccggtctcga tcgtttgacg aagcgacaga
     1141 tcgagcgcct gcgttatcgc ttcacgactg acaaccaaga aactttccac gacgcacgcg
     1201 cgcggctcgt ctacgacgac caactcggcg ccatcatcga cttcggcgat ctcgaaacca
     1261 cgacacccgt cggcacgctc gaaggctact tcttcgccac cgatcgacgt acgaggctat
     1321 tcagcgacta cgtcttcgcc gttaccgatc tctgatgtgg tccatcggca tctacaaagg
     1381 ggattcgccc taccggctac gacctgcgac ggcgatgcca acgctgtcta agcaaaacgt
     1441 gacggacgtg ccaaccactt tcgtagccga tcctttcatg attcacgacg gctcgtggca
     1501 catgtttttc gaagtcctgc tcacttcaga caaaggagag atcggactgg ccaccagcga
     1561 caacggtctc gactggacct atcaacagat cgttctgcgc gaagagtttc atctctccta
     1621 tccctacgtt ttcaaatggc aggacacgta ctacatgatc cccgagacgc tc
//
LOCUS       DASWTX010001106         6245 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_124671, whole genome shotgun sequence.
ACCESSION   DASWTX010001106 DASWTX010000000
VERSION     DASWTX010001106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6245)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6245
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124671"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..721)
                     /locus_tag="VGD38_16830"
     CDS             complement(<1..721)
                     /locus_tag="VGD38_16830"
                     /inference="COORDINATES: protein motif:HMM:NF021530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-histidine N(alpha)-methyltransferase"
                     /protein_id="HEY0729750.1"
                     /translation="MAQTEPARDKRLFIHNLVKRDPLANLADDVRKGLAAQPKRFLPK
                     YFYDELGSQLFEAICLLPEYYLTRAENEILKHYADEIAGSVDGQITLVEMGSGSASKT
                     RLVIEALLRRQQQLLFMPVDISASALESSSRILLQSYPRLTIEAYAADYFAGMAELGK
                     KPRGRTLALFLGSNISNFDQEEALRFLRAMRNVLNKGDALLLGADLKKDPKVLEAAYN
                     DALGVTSAFNLNVLARINRELG"
     gene            809..2491
                     /locus_tag="VGD38_16835"
     CDS             809..2491
                     /locus_tag="VGD38_16835"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0729751.1"
                     /translation="MQLPRALFIALLLVIFCSSAFAQGFKQELEAPEKIELTVRNLDG
                     RVSVVASEEQQKKVTIDAKSAGDAIDPSDVKVEANGGSFLVDVRPRGEKNRIDVVVTI
                     PVRSKVDVEGKAGSVDVIGNVESATVKTDTGTIHADVPLDGLKFDFVWEASRPRYMSD
                     VELPPVKEKAGGQFKLSGRLGEKDKKKEEVIALNFRTQRGVVLLNIDPEMAPADLRER
                     PLTEAARAIVRSGDSQLVEAIRKVSPKMFGDYAKTLPPPEKEPELVQRTPPGQIVSSV
                     SPQLLRFNASVTDRHGRAISGMRESDFTVWENGIERRVTNVSPANEPFNLVLLLDVSG
                     SVEERMDFIRKAARDFLRTASPQDRISIISFRDDIQIISDFSTDRQMLSRKLDEIDAG
                     GGTALYDALGYVLSEPLRRLRGERTAIVVMSDGDDNKSFLPFPAILEALSESGALVYP
                     LYVPSGLIPETSVPRPEITIDPLRSRYLTLTTRAEDEGRKLATASGGVYYPIRRIEDL
                     QKAYDDVVAQLRSAYTITYASNSVSVSPRVRVRTNRDGASIRLSPVVGLNNP"
     gene            2504..3772
                     /gene="xseA"
                     /locus_tag="VGD38_16840"
     CDS             2504..3772
                     /gene="xseA"
                     /locus_tag="VGD38_16840"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEY0729752.1"
                     /translation="MNQPLFNALFDEEERKPLTVSQLTNSIRISLESRFPSVWVEGEI
                     SNFKDHSSGHWYFTLKDQNAQLRAKCFRSANTRIRFRPANGLHVRARGRLSVYPLRGE
                     YELVVEALDPVGAGALQVAFEQLRDRLQAEGLFAKELKRPLPVFPRRVGIVTSPTGAA
                     IRDILNVISRRTRTVHVLFSPAKVQGDSAGPSIARAIQFINQYHERALRDGRTADLVD
                     VLIVGRGGGSTEDLWAFNQEEVARAIRKSAIPVISAVGHETDFTIADFVADMRAPTPS
                     AAAELVAAHEDQLCSALDQLGRQMNRLMRYRIVDLRSRVQEQALSHAFDEVKSRLRNA
                     RRRFDTASTACNGAMESSLQEARERLGLAAASLDALSPLAVLQRGYAIAQDASGKPLR
                     EAAAVNIGDAVRVRLAKGSLNTRVETVEES"
     gene            3796..4518
                     /locus_tag="VGD38_16845"
     CDS             3796..4518
                     /locus_tag="VGD38_16845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729753.1"
                     /translation="MARIVINLEPGPGNKPPVRRKSRRWLKILALLAIVVVVVIGLAA
                     AGGFFWWRHYQTTPAYSLTLLVDAAQRGDVEEFAKRIDDEEIARNMAAVVSKKASSRY
                     GLAMSTATQARIDQAMPALLPRLKQTMHEEVTKEIKNFVAASAPNPKPFYVLLFLVPT
                     LVKITTEGDVAKAASAVTHSSFELTMRRDADRWKVTGFNNDAVVQRIVDSMMKDLPAI
                     GSVDSVDPLLKNLGKPRKKRGR"
     gene            4515..4793
                     /locus_tag="VGD38_16850"
     CDS             4515..4793
                     /locus_tag="VGD38_16850"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: protein motif:HMM:NF002139.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEY0729754.1"
                     /translation="MTNAQEQARSFEASLEALERIVQQLESGDLPLEKSLELFEQGVR
                     LSRECQERLSQAERRIEVLLRDNQGRPVVNAYTEPTSNDGVAENENGF"
     gene            4777..5706
                     /locus_tag="VGD38_16855"
     CDS             4777..5706
                     /locus_tag="VGD38_16855"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF045485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004337 - geranyltranstransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="farnesyl diphosphate synthase"
                     /protein_id="HEY0729755.1"
                     /translation="MKTGSDALVQNKLELDNLLAASRALVEVELNRLLPPSGAAPEKV
                     HQAIRWSVFAGGKRFRPALLLATGEAFGAPVEQLIRTACAFEMIHTYSLIHDDLPAMD
                     DDDLRRGRPTCHVRFDEATAILAGDALQTLAFQTIADDDRLDASTRIALISELARAAA
                     TPDGMVAGQALDMEAEARQVNGTQLQEIHRLKTGALIVGAARCGALIGAADEHELTAI
                     TNYGAHLGLLFQITDDLLDVTASAEELGKTPGKDVRSRKATYPALYGIDEAREKAVKA
                     HRAACDALEQLEQIARPTDVLRRIVDFILRRTT"
     gene            complement(5729..>6245)
                     /locus_tag="VGD38_16860"
     CDS             complement(5729..>6245)
                     /locus_tag="VGD38_16860"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY0729756.1"
                     /translation="AAVKTSLDRNLERHGMRARSSTSKADTRFGFDQHMVMIYVFLIV
                     MSAIIGCVGGLGLMTTMSLNVLERRREMGVLRAIGATPRIVWMMVVVEGMVIGVLSWA
                     IAALLAWPVSKFVGDSLISMMFRSGLDFTFEPLGLAIWLLVSIALSAVASFVPAWRAS
                     RATVREALAYE"
BASE COUNT         1299 a         1848 c         1859 g         1239 t
ORIGIN      
        1 cgcccaactc gcgattgatt cgcgccagca cgttgagatt gaacgccgaa gtcacgccga
       61 gcgcgtcgtt gtaagcagcc tcgagaacct tcgggtcctt cttcagatcc gcgccgagca
      121 acaacgcgtc gcctttgttg agcacattgc gcatcgcacg caggaaacga agcgcttctt
      181 cctgatcgaa gttgctgatg tttgaaccga ggaacaacgc gagcgtgcgg ccgcgcggct
      241 tctttccgag ctcggccata ccggcaaaat aatccgccgc gtaagcctcg atcgtgagcc
      301 gcggatacga ctgcaacaga atccgcgaac tgctttccag cgccgacgcc gaaatatcaa
      361 ccggcatgaa caacaactgc tgctggcggc gcaacaacgc ctcgatcacc agccgcgtct
      421 tggacgcact gccgctgccc atctcgacga gcgtgatctg cccgtcgact gaacccgcga
      481 tctcgtcggc gtagtgtttg agaatctcgt tctccgcgcg cgtcaaatag tattcgggca
      541 gcaggcagat cgcttcgaag agctgcgaac ccagctcgtc gtagaagtac ttcggcaaaa
      601 atcgtttggg ctgtgcggcg aggcctttgc gaacgtcgtc cgcgaggttc gcgagcggat
      661 ctcgcttcac aagattgtga atgaaaaggc gtttatcgcg ggcgggttcc gtttgtgcca
      721 agcgtgtttt tcctccggga catgatagcc cataatccgc gcttgaccac cacgcgcgcg
      781 gcgggcaaga tcggtcgcga tgttttttat gcaattgccc cgagcgctgt ttatcgcgct
      841 tttgctggtc attttttgta gttccgcatt cgcccagggt ttcaaacagg aactcgaagc
      901 tccggaaaag atcgagttga ctgttcgcaa tctcgatggg cgcgtcagtg tggtcgcctc
      961 cgaagagcag cagaagaaag tcacgattga cgccaaatct gccggcgacg cgatcgatcc
     1021 gagcgacgtc aaggttgaag ccaatggcgg gagctttttg gtcgacgtgc gtccacgcgg
     1081 cgagaaaaac cgcatcgacg tggtcgtgac gattccggtg cgctcgaaag tcgacgtcga
     1141 aggcaaagcg ggatcggtcg acgtgatcgg caatgtcgaa tccgcgacag tgaagaccga
     1201 cacgggaacg attcacgccg acgttccact cgatggtttg aagtttgact tcgtttggga
     1261 agccagccgt ccgcgttaca tgagcgacgt cgagctgccg ccggttaaag aaaaagccgg
     1321 gggccagttc aagctgtccg gccgtctcgg tgaaaaagac aagaagaagg aagaagtgat
     1381 cgcgctcaac ttccgcacgc agcgcggcgt ggtgctgctg aatatcgatc cggaaatggc
     1441 gccggctgat ttacgtgaac ggccgctgac ggaagccgca cgtgcgatcg ttcgcagcgg
     1501 cgacagccag cttgtcgaag cgattcgcaa agtgtcgccg aagatgttcg gcgactatgc
     1561 gaagacgttg ccgccgccag agaaagaacc cgagttggtc caacgcacgc cgccgggtca
     1621 gattgtcagt tcggtttcgc cgcagttgct tcgtttcaat gcgagcgtaa cggatcgaca
     1681 cgggcgcgcg atcagcggca tgcgcgaatc agactttacg gtttgggaaa acggaatcga
     1741 acgccgcgtg acgaacgtct cgcccgcgaa cgagccgttc aatctcgtgc tgctgctcga
     1801 cgtttccggc agtgtcgaag agcgcatgga ttttattcgc aaagccgcgc gcgacttttt
     1861 gcgcacggcg agcccgcagg atcgcatctc gatcatcagc ttccgcgacg acatccagat
     1921 catttccgat ttcagcaccg accgccaaat gctctcgcgc aaactcgacg agatcgatgc
     1981 gggcggcggc accgcgcttt acgatgcgct cggttatgtt ttgagcgaac cgttgcggcg
     2041 cttgcgcggc gaacgcaccg cgatcgtcgt catgtctgac ggcgacgaca acaagtcgtt
     2101 tctaccgttt ccggcgattc tcgaagcgct ctccgaatcg ggcgcgctgg tttatccgct
     2161 ttacgttcct tccggtctga tcccggaaac gagtgtgccg cggccggaaa tcacgatcga
     2221 tccgttgcgc tcccgttatt tgacgttgac gacgcgcgcg gaagatgaag gccgcaaact
     2281 cgccaccgct tcgggcggcg tttattatcc gattcgacgc attgaggatt tgcagaaagc
     2341 gtacgacgac gtcgtcgcac agttgcgttc ggcttacacg atcacttacg catcaaattc
     2401 ggtttccgtg tctccccgcg tgcgcgtgcg cacaaaccgc gacggcgctt caattcgttt
     2461 gagcccggtg gttggtctga acaatccata acgaaattcc ccgatgaacc aaccgctttt
     2521 caacgcgctt ttcgacgaag aagaaagaaa accgctaacc gtctctcaac tcaccaactc
     2581 gatccgcatc tcgctcgaat cgcgctttcc gtcggtgtgg gttgaaggcg agatctcgaa
     2641 tttcaaagac cactcgtccg gccactggta tttcacgctc aaggaccaga acgcgcagct
     2701 tcgcgcgaag tgctttcgtt ccgccaacac gcggattcgc tttcggcctg cgaatggttt
     2761 gcacgtgcgc gcgcgtggca ggctgtcggt ttatccgttg cgcggtgagt atgagctggt
     2821 cgtagaagcg ttggatcccg tgggcgcggg cgcgttgcag gtcgcgttcg aacagttgcg
     2881 cgatcggttg caggcagaag gtttgtttgc gaaggagttg aaacgcccgc tgccggtttt
     2941 tccgcgtcgc gtcgggatcg tgacttcgcc aacgggtgcg gctatcagag acattctcaa
     3001 cgtgatctcg cgccgcacgc gcacggtgca cgtcttgttt tcaccggcga aggttcaggg
     3061 cgacagcgcg ggaccgtcga tcgcacgtgc gattcaattc atcaaccagt atcacgaacg
     3121 tgcgctgcgc gacgggcgca cggcggatct cgtcgacgtg ttgattgtcg ggcgtggcgg
     3181 tggttcgact gaagatctgt gggcgttcaa ccaggaagag gttgcacgcg cgattcgcaa
     3241 gtcggcgatc ccggtgattt ccgcggtggg acatgaaacg gatttcacga tcgcggattt
     3301 cgttgccgac atgcgcgccc cgacgccgtc agcggccgca gagctcgtcg ctgcgcatga
     3361 agatcagctc tgttcggcgt tggaccagct cggccggcag atgaatcgtt tgatgcggta
     3421 tcgaatcgtt gacttgcgca gccgtgttca ggaacaggcg ctgtcgcatg cgtttgatga
     3481 agttaagtcg cggctccgca acgcgcgccg gcgtttcgac acggcttcga cggcgtgcaa
     3541 cggcgcgatg gaaagcagtc ttcaggaagc gcgcgaacgg ctcgggctcg cggccgcttc
     3601 gctggacgca ctctcgccgc tcgccgtgtt gcaacgcggc tacgcgatcg cgcaggatgc
     3661 atcgggcaaa ccactgcgcg aggccgccgc agttaacatt ggcgacgcag ttcgtgtccg
     3721 cctcgcaaaa ggaagcttga acacgcgcgt cgaaacagtt gaagaatcct gagccgtgtt
     3781 agttcgtgta aatccgtggc cagaatcgtt atcaatcttg agcccggtcc aggcaacaag
     3841 ccgcccgttc gccgcaagtc gcgccggtgg ctgaagatac ttgcgctact cgcgatcgtt
     3901 gtcgtcgtag tgattggtct ggccgcggcc ggcggcttct tctggtggcg gcattatcaa
     3961 acaacgccgg catactcgtt gacgctgctc gtcgatgccg cacaacgcgg cgacgttgag
     4021 gagtttgcga agcgcatcga cgacgaagag atcgcacgca acatggccgc ggtggtaagc
     4081 aagaaagcga gctcgcgtta cggcctcgcg atgagcacgg ccacacaagc gaggatcgat
     4141 caggcgatgc cggcgttgtt gccgcggctg aagcagacga tgcacgagga agtcacgaag
     4201 gagatcaaaa acttcgtggc tgcgtcagcg ccgaacccga agccgtttta tgttctgctg
     4261 ttcctcgtgc cgacgctcgt gaagatcacg accgaaggcg acgtcgcaaa ggccgcgtca
     4321 gcagtgactc atagctcttt cgagctcacg atgcggcgtg acgccgatcg ctggaaagtg
     4381 accggtttca ataacgacgc cgtggtccaa cgcatcgtcg acagcatgat gaaggacttg
     4441 ccggccatcg gctccgttga ctctgtcgac ccgttgttga agaatctcgg caagccccgc
     4501 aagaagagag gaagatgaca aacgctcagg aacaggcgcg aagttttgaa gcttcgctgg
     4561 aggcgctgga gcgcatcgtg cagcaactcg aaagcggcga cttgccgctc gagaagagtc
     4621 tcgagctttt tgagcagggc gtccggctct cgcgcgaatg ccaggaacgt ttgagccagg
     4681 ccgagcggcg cattgaggtt ttgttgcgcg acaatcaggg ccggcccgtg gtcaacgctt
     4741 acaccgaacc aaccagcaac gatggcgtgg cagaaaatga aaacgggttc tgacgcgctg
     4801 gtccaaaaca aactcgagct cgacaatctg ctcgctgcca gccgcgcgct ggtggaagtc
     4861 gagttgaacc gtttgctgcc gccatcgggc gcggcgccgg agaaggtcca tcaggcgatt
     4921 cgctggagcg tgtttgcggg cgggaagcgt ttccggccgg cgttgttgct ggcaaccgga
     4981 gaggcgtttg gcgcgcccgt cgagcagctc attagaacgg cgtgtgcgtt tgagatgatt
     5041 cacacgtact cgctgattca cgacgatctg ccggcgatgg acgacgacga tctgcgacgc
     5101 gggcggccga cgtgtcacgt tcgttttgac gaagccactg cgattctcgc tggggacgcg
     5161 ctgcaaacac tcgcgtttca aactatcgcc gacgacgatc gtctcgatgc ctcaacacgc
     5221 atcgcattga tttcagaact ggcgcgcgcg gcggcgacgc cggacggcat ggtcgcggga
     5281 caggcgctcg acatggaagc cgaggcgcgg caggtgaacg gcacacagtt gcaggagatt
     5341 caccgtttga agaccggcgc cttgatcgtc ggcgccgcgc gctgcggcgc tctaattgga
     5401 gccgcggatg aacacgaatt aacggcgatc accaactacg gcgcgcatct gggtctgttg
     5461 tttcagatca ccgacgactt gctcgacgtg accgcgagcg cggaagagtt aggcaaaact
     5521 ccgggcaaag acgttcgctc gcgaaaggca acgtatccag cgttgtacgg catcgacgaa
     5581 gcgcgcgaga aagccgtcaa agcccaccgc gctgcttgcg acgccctcga acagctcgag
     5641 caaatcgctc gcccaaccga cgtgctgcgc cgcattgttg atttcatcct gcgccgcacc
     5701 acttagtctc cttaaaatcc cttctctctt actcgtacgc tagcgcttct ctcaccgtcg
     5761 cgcgcgacgc acgccacgca ggcacaaaac tcgccaccgc actcaacgcg atcgacacaa
     5821 gcaaccagat cgccaatccc aacggctcaa acgtgaaatc caatccactc cgaaacatca
     5881 tgctgatgag cgagtcgcca acaaacttac tcaccggcca cgccaacaac gccgcaatgg
     5941 cccaactcaa cactccaatc accatgcctt ctacaacaac catcatccaa acgattcgcg
     6001 gcgtcgcacc tatcgcgcgc aacacgccca tctcgcgccg tcgctccagc acgttgagac
     6061 tcatcgtcgt catcaacccc aatccgccga cacaaccgat gatggccgac atcacgatca
     6121 gaaagacgta gatcatcacc atgtgctgat cgaagccaaa ccgcgtgtcg gctttgctcg
     6181 tgctgctgcg cgctcgcatt ccgtgtcgtt cgagattgcg atcgaggctc gtttttacag
     6241 cggcg
//
LOCUS       DASWTX010001107         2919 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_299880, whole genome shotgun sequence.
ACCESSION   DASWTX010001107 DASWTX010000000
VERSION     DASWTX010001107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2919
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299880"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2919
                     /locus_tag="VGD38_16865"
     CDS             <1..>2919
                     /locus_tag="VGD38_16865"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HEY0729757.1"
                     /translation="ALDDESEARATAKAKVVPINAPARKPVWSSPYLKIAAAVIVAFG
                     LLLSLWWLLGRKSDVESGMVALNQAQGNERLIQSRISELNYAELRSVRGGGAKLQDQQ
                     ARDYSERLLLDAVNEKQDAASYHALGRLYLAERNFTKAREQFEKALQKDPNDPQLQSD
                     MGAALLELAQASDDGERLRLLAESLQYLDRALEMNPSLPEALFNRALVYQHMPLVPQE
                     KEAWRRYLQIDSTSPWAKEAERNLKSLEERERQGQSKRTSLHESFLAAYRAKDRDAAW
                     TALKQSRSRAGNYIVDKLLDEYLSLNLAGKQKEAAVVGDALSFAGDVENQRVADRYTS
                     DLVAFYRRARGENYAELARARQLASSAREEYDRSEFEPSIELLAEAQKLFAAMGNDSE
                     ALFTESWIGYNELRLTGQSSQQRFEQLAQTYSTRGYQSLLAQSLHGLSDALTQHNEFS
                     KVLDNATRALTKAEEIDDEATRLRCLQQFVSMNLRFGNYAEALSYGMKALAVAPEFAT
                     EPKLIWTFYQEIAQTLSRLDLSSAALEFQREASRLANVAEWPMIIARSYTQLGVILGR
                     RHEFGPAIEAGLRAIEEGRKIENEKSRLNTISHAHLRLAEIYRNAGDYPSALANYDQA
                     LTMFDQLQQGMFLYDARKGRFITYLNAGNVIEAQKELDVALTLFELYRKKIHEERNRN
                     AFFDVGQDIYDLAIDFALTKLNDKEKAFQYTEDSRARALLDLIHTDAPQLIDKGHGPD
                     IQMAAGVDPQPVASMRGSLPRDVAVVEYVMLSNKLIIFVLLGDKLEVEVKPVPAAALS
                     QEILSYATSLARNRDPETAKYAAVNLYRLLIQPVERYFRDAKEVCIVPDKALSSLPFI
                     ALRSPDTGKFLIEEHCVIVSPSFNVFMKSTLAAVKKQHTNAESVLSVGNPDFSRQSFP
                     DLGDLPAAAREAEQVAASYKSQPLLGPKANEPHVRARMSQADVIHFAAHYVVEPQSPL
                     K"
BASE COUNT          659 a          805 c          871 g          584 t
ORIGIN      
        1 gcactcgacg acgaaagcga ggcgagagcg acagcgaaag cgaaagtcgt tccgataaat
       61 gcgccggcac gaaagccggt gtggtccagt ccatatctca agatcgccgc agcagtaatc
      121 gttgcgtttg gactgttgtt aagtctgtgg tggctactcg gacgcaagtc cgatgttgag
      181 agcggaatgg ttgcactgaa ccaggcgcag ggtaacgaac gtttgattca gtcgcggatt
      241 tcggagctca actacgctga actgcgaagc gtgcgcggcg gtggggcaaa gctgcaagac
      301 cagcaggcgc gcgactacag cgaacggctg ctgctcgacg ccgttaacga gaagcaggac
      361 gcggcgtcgt atcacgcttt gggccggctc tatcttgccg agcgaaattt cactaaggca
      421 cgcgagcagt tcgagaaagc attgcagaaa gatcccaacg atccgcagtt gcaaagcgac
      481 atgggcgcgg cgttgttgga gttggcccag gcaagtgacg acggcgagcg gttgcgcttg
      541 ttggctgagt cgttgcaata cctcgatcgt gcgctcgaaa tgaacccgtc gttacccgaa
      601 gcgcttttca accgagcgct ggtttatcaa cacatgccgc ttgtgccgca agagaaagag
      661 gcgtggcgcc ggtatctgca aatcgattca acgtcgccgt gggccaaaga agccgagcgc
      721 aatctcaagt cgctggaaga acgggagcgg cagggacagt cgaagcgcac cagtctgcat
      781 gaatcgtttc tcgccgctta tcgagcgaag gatcgcgacg ctgcgtggac tgcgttgaag
      841 cagagccgtt cgcgcgccgg gaattacatc gtcgacaaat tactcgacga atacttgtcg
      901 ctgaatctcg cgggcaaaca gaaggaagca gcggtcgtcg gagacgcgct ctcttttgcg
      961 ggggacgtcg agaaccagcg tgtggccgat cgttacacgt cggatcttgt tgcgttttat
     1021 cgccgggcgc gtggtgaaaa ctacgccgag ctcgcgcgtg cccggcagtt agcgtcttca
     1081 gcacgcgaag agtacgaccg ctctgaattt gaaccttcga tcgagcttct cgccgaagcg
     1141 caaaagttgt ttgccgcgat ggggaatgac tctgaggcgc tctttaccga gagttggatc
     1201 ggttacaacg agctgcgctt aaccggacaa agcagtcagc agcgattcga gcaactcgct
     1261 caaacatact caacccgcgg ttatcaatct cttctcgccc aatctctgca cgggctttcc
     1321 gacgcgctca cgcagcacaa cgagttctcg aaagtgttgg ataacgcaac ccgagcatta
     1381 acaaaggccg aggagattga cgacgaagcg acacgtttgc gctgtctgca acagtttgtc
     1441 tcgatgaacc tgcgcttcgg gaactacgcg gaagcgttga gctatggcat gaaggccctg
     1501 gcggtcgcgc ctgagttcgc caccgagccg aaactgatct ggacgttcta ccaggaaatt
     1561 gcccaaacgc tttcgcggct cgatctctcg tccgcggcgc tcgagtttca gcgtgaagct
     1621 tcgcgcctgg cgaatgttgc cgaatggccc atgatcatcg cccgctcgta cacgcagttg
     1681 ggcgtcattc tcggacgcag gcacgagttt gggccggcaa tcgaggccgg tttgcgcgcg
     1741 atcgaagagg gccggaagat cgagaacgag aaaagcaggt tgaatacgat ctcgcacgca
     1801 cacctgcgtc tcgccgagat ctatcgcaac gccggcgact atccgagcgc gctggcgaat
     1861 tacgatcagg cgctgacgat gttcgatcag cttcagcagg gaatgtttct gtacgacgcg
     1921 cgcaagggca ggtttattac ctacctcaac gccggaaacg tgatcgaggc ccaaaaggaa
     1981 ctggacgttg ctctgacgtt gtttgagctg tatcgcaaga agattcacga agagcggaat
     2041 cgcaatgcgt tctttgacgt tggccaggac atctacgacc tcgccatcga cttcgcgctc
     2101 accaagctca acgacaaaga aaaagctttc caatataccg aagactcacg cgcacgcgcg
     2161 ctgctcgacc tgattcatac cgacgctccg caattgatcg acaaaggaca cggaccggac
     2221 attcaaatgg ccgcgggcgt tgacccgcaa ccggttgcgt ctatgcgtgg ctcgctgccg
     2281 cgcgacgtgg ccgtcgtcga gtatgtaatg ctgagcaaca agctgatcat ctttgtgctg
     2341 ctgggcgata agttggaggt tgaagtgaag ccggtgcccg cggctgcgct gagtcaggaa
     2401 atactctctt acgcgaccag ccttgctcgc aatcgcgacc cggagacggc gaagtacgca
     2461 gccgttaatc tttatcggct gctgatccag ccggtcgaac gatacttccg cgatgcgaaa
     2521 gaagtgtgca tcgtgccgga caaagcactc tccagcctgc cgttcatcgc gcttcgatct
     2581 cctgacacgg gaaagtttct gatcgaagag cattgcgtga tcgtgtcgcc gagcttcaac
     2641 gtgtttatga aatcgacgct tgcggccgtt aaaaaacagc acacgaacgc cgagtcagtg
     2701 ttgagtgtcg gcaatccgga tttttcgcgg cagagttttc cggacctcgg ggatctgccg
     2761 gccgcggcgc gagaagcgga gcaggttgcc gcgagttaca agtcacaacc gctgcttggt
     2821 ccaaaagcaa acgagccgca cgtcagggcg cgtatgtcgc aagccgacgt cattcatttc
     2881 gcggctcatt acgtcgtcga gccgcagtcg ccgttgaag
//
LOCUS       DASWTX010001108         1764 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_37741, whole genome shotgun sequence.
ACCESSION   DASWTX010001108 DASWTX010000000
VERSION     DASWTX010001108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37741"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..641)
                     /locus_tag="VGD38_16870"
     CDS             complement(<1..641)
                     /locus_tag="VGD38_16870"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY0729758.1"
                     /translation="MPINRREFTYGLALSLGALPLYRFPSQQQMRVNGQRLMEHIKGL
                     AEFGANPQGGVSRVAYSDADKQGREYVMGLMKDARLEVSIDAAGNIIGRRPGSVNKLP
                     PLILGSHIDTVPEGGNYDGVVGSMGAIEVAQTLAENNVTLRHPLEVVIFQNEEGGLIG
                     SRAMNGELTEKELDLVSRSGKTIREGIKFIGGDPSKLSEVKRQHIGAYLELHI"
     gene            730..1593
                     /locus_tag="VGD38_16875"
     CDS             730..1593
                     /locus_tag="VGD38_16875"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like serine protease"
                     /protein_id="HEY0729759.1"
                     /translation="MKRMICFLALTAAVVVGSLLFVSPRASAITYGFVDSNNQFRNTG
                     AFMIKSPETGEVFPICSGTLITPNVFLTASHCTLFFTQDLAPQGFVAFVSLDSSIPFG
                     ALTSNKTNLLPVSHVVSNPNFNQSQSDSGDIAVLILERNVRGVTPAPLPACGLLDQLA
                     HNGLQSAVFTNAGYGLQNRVVGGGVPFFQDVNPVPRMFSFSSFNSLNGGYLRLSQNPA
                     TGNGGACFGDSGGPNFLTVNGQQLIVSITITGDSVCRSTNVAYRLDIPSAQGFLAAVN
                     AAFGTSIPVSC"
BASE COUNT          292 a          487 c          538 g          447 t
ORIGIN      
        1 tcgatgtgta actcgagata cgcgccgatg tgttgtcgct ttacttcgct caatttgctt
       61 gggtcgccgc cgatgaactt gatgccttcg cgaatcgtct tgccgctgcg gcttacgaga
      121 tcgagttctt tctccgtcag ttcgccgttc atggcacggc tgccgatcaa gccgccttcc
      181 tcgttttgga aaatgacgac ttcgagcggg tgtcgcagcg tgacgttgtt ttcggcgagt
      241 gtttgggcca cttcgatcgc gcccatcgag ccgacgacgc cgtcgtagtt gccgccttcg
      301 ggaacggtgt cgatgtgcga gccgaggatt aacggcggca gtttgttaac actgccgggc
      361 cggcgtccga tgatgttgcc tgccgcgtcg atcgatactt cgagacgcgc gtctttcatc
      421 aatcccatca cgtattcgcg gccttgcttg tcggcgtcgc tgtaagcgac acggctcacg
      481 ccgccctgtg ggttggcgcc aaactcggcg aggcctttga tgtgttccat gagccgctgc
      541 ccgttgacgc gcatttgttg ctgcgaaggg aagcgataaa gcggcaaagc gccgaggctc
      601 agtgcgagac cgtaggtgaa ttcgcggcgg ttgatgggca tggtttttct tgagacgctc
      661 cagggtcagg agtagaatca ggccgttcca gtatccctta tcccatcttt cctgaacaag
      721 gagatcaaaa tgaaacgcat gatctgtttc ctcgccctga ccgctgcggt cgttgttggg
      781 tcgctgttgt ttgtctcgcc gcgagcttcg gccatcactt acgggttcgt tgattcgaac
      841 aatcagtttc gcaacacggg cgcgtttatg atcaagtcgc cggagacggg cgaggtcttt
      901 ccgatctgct ccggcacgct gatcacaccg aacgtttttc tgacggcgag tcattgcacg
      961 ttgttcttca cgcaggatct cgcgccgcag gggttcgtgg cgtttgtcag tcttgattcg
     1021 tcgataccgt ttggggcgtt gacgagtaac aagacgaacc tgttgccggt gtcgcatgtg
     1081 gtcagtaatc cgaatttcaa tcagagccag agtgattccg gggacattgc ggtgctgata
     1141 ctggagcgga acgttcgcgg tgtaacgccg gcgccgctgc ctgcgtgtgg gttgttggac
     1201 caactggcgc acaatggatt gcagagcgcg gtgtttacga atgcgggtta tggacttcag
     1261 aaccgcgtgg ttggcggtgg ggtgccgttc tttcaggacg tgaatccggt gccgcggatg
     1321 ttttcgttct cgagttttaa ttcactgaat ggtggttacc tgcggttgtc gcagaatcct
     1381 gctactggaa atggcggcgc gtgtttcggc gactcaggtg gaccaaactt cctgactgtt
     1441 aacgggcagc aactgatcgt ctcgatcacc atcaccggcg actccgtctg tcgttccaca
     1501 aacgtcgcct accgcctcga catcccctcc gcacagggtt tccttgcggc agtaaacgcc
     1561 gccttcggca cctcgatccc tgtttcgtgc tgagggttca ctgcggctct gccgccggaa
     1621 gtgacgtgtt cgtgcggctc cgccgccgga agtgctgtgg ttcattgcgg ctccgccgcc
     1681 ggatgtgagg cgaggctacg cctcgccgta cgcgttacta aaaaatagtt gggctatgcc
     1741 cctggttcgg gcttcgccct ggcg
//
LOCUS       DASWTX010001109         3422 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_252063, whole genome shotgun sequence.
ACCESSION   DASWTX010001109 DASWTX010000000
VERSION     DASWTX010001109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3422)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3422)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3422
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252063"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..357)
                     /locus_tag="VGD38_16880"
     CDS             complement(<1..357)
                     /locus_tag="VGD38_16880"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY0729760.1"
                     /translation="MAVQSGSLSVAGKVAIVTGGSRGIGRAVVDLLSAFGAKVVVNYL
                     RDEQAAAATVARASEHGAEAVAIQANVSELPEAQRLVNETLEQFGRIDFLICNAGIWD
                     GAPVESLSEELWDKTVE"
     gene            complement(388..1152)
                     /locus_tag="VGD38_16885"
     CDS             complement(388..1152)
                     /locus_tag="VGD38_16885"
                     /inference="COORDINATES: protein motif:HMM:NF019342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEY0729761.1"
                     /translation="MYRRPRIGIPMRIELPTDRFYLSRHYSEAVEAAGGAPVHISLIP
                     KADYIDSVVEALDGILLPGSDSDVDPLRYGQQPHPNLGAVHPIKDETDLLLIEAAERK
                     RIPVLAICFGMQVLNVARGGTLIQDIASQAPEAIKHEQGVPRDRPSHRVSLKEKTKLS
                     SICGVEAAVVNSHHHQAIETLGANLIATAWSTDGIIEALEDPRQDRFLVAVQWHPELG
                     WERDAISQRLFAALVMEASEAAKTTAETTSAGVSIS"
     gene            1233..1778
                     /gene="hslV"
                     /locus_tag="VGD38_16890"
     CDS             1233..1778
                     /gene="hslV"
                     /locus_tag="VGD38_16890"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015365078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004298 - threonine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0051603 - proteolysis involved in protein
                     catabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HEY0729762.1"
                     /translation="MSKDRNKVRSTTVLLVRKDTRVALAGDGQVTLGETVMKASAKKV
                     RRLYNDQILAGFAGATGDAFSLLTRFEAKLEQYHGNLERAAIELSKEWRTDKMLRHLE
                     ALLVVADKKSSFLLSGNGDVIAPDEGVLAIGSGGSYALAAARALIKHTDLSARDVAVE
                     ALRIAGEICIYSNQNIVVEEL"
     gene            1793..3220
                     /gene="hslU"
                     /locus_tag="VGD38_16895"
     CDS             1793..3220
                     /gene="hslU"
                     /locus_tag="VGD38_16895"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HEY0729763.1"
                     /translation="MVIYLAGEVDEEARLDEMSPRQIVTELDKHVVGQKNAKRAVAIA
                     LRNRVRRQKLPPEMAVDVMPKNIIMIGSTGVGKTEIARRLARMSNSPFLKVEASKFTE
                     VGYVGRDVESMIRDLTEISVEMTRQEKSEEVAEKAELNVEERILDLLLPPPRTNAGYF
                     DFDADTNEEQSPDLDSPARDEQFQRTREKLRTQLRSGKLDNRLVELEVRETNFPVIEL
                     AGPQGVEEMGINMKDMLGNLFQGRSKRRKMRVDEAMEYLMQEEEERLIDMDQVARAAI
                     ERVENSGIIFLDEIDKIAGRESGHGPDVSREGVQRDILPIVEGTTVNTRYGMVRTDHI
                     LFVAAGAFHVSKPSDLIPELQGRFPIRVELESLTIEDFKRILTEPRNALIKQYQAMME
                     TEGVSIEFTSDAIDSIANFAAQVNQQTEDIGARRLQTIMEKLLEEISFEGPDLEPKSQ
                     RIDAHYVENMLSNTVKDQDLSRYIL"
BASE COUNT          769 a          977 c          956 g          720 t
ORIGIN      
        1 ctcgaccgtc ttgtcccaca gttcttccga aagcgactca accggcgcgc cgtcccaaat
       61 cccggcgtta caaatcagga agtcgatacg tccgaactgt tcaagtgttt cattaacgag
      121 ccgctgggct tcaggcaatt ccgaaacatt tgcctgaatt gcgactgctt ccgcgccgtg
      181 ttcactcgcc ctcgcgacag ttgccgccgc ggcctgttcg tcccgcaaat aattgacgac
      241 caccttcgcg ccaaacgcag aaagcagatc gacaacggcc cttccgatgc cgcgcgatcc
      301 gccggttacg atcgctactt tccctgctac gctcaggcta ccgctctgca ctgccattcc
      361 actttccttc ccgtcgttga agtccgctca ggagatggag acgccagcgc tcgttgtttc
      421 cgcagttgtt ttcgccgctt cgctcgcttc catgaccagg gccgcgaaca accgttgcga
      481 gattgcatca cgttcccacc cgagttcagg atgccactgc actgcaacca ggaatcgatc
      541 ctgccgtgga tcttccagtg cttcaataat accgtctgtg gaccatgccg tcgcgatcag
      601 attcgcgccc aatgtttcga tggcctggtg atgatgactg ttcaccaccg cggcttcgac
      661 accgcagatg ctcgacagtt tagtcttctc tttcaaactc acgcgatgcg acgggcgatc
      721 acgcggcact ccctgctcgt gcttgatcgc ttccggcgcc tgcgacgcga tgtcctgaat
      781 cagcgtacca ccgcgcgcga cattcaacac ctgcatgccg aaacagatcg ccaacaccgg
      841 gatccgcttt cgctcggcgg cttcaatcag taacaaatca gtttcgtctt ttatcggatg
      901 taccgcgccg aggtttggat gcggctgttg gccataacgt aacggatcga cgtcagaatc
      961 actgccgggc aacagaattc catcaagtgc ttcgacaact gagtcgatgt aatccgcttt
     1021 cgggattaaa cttatgtgta cgggagcgcc gcccgcggcc tccacggcct cactataatg
     1081 acgcgagaga taaaagcgat cggttgggag ttcaatgcgc atcgggatgc cgatgcgggg
     1141 tcgtctgtac atgcgccaat gataacccat gtcacttcaa atgctctcct tgacttacgt
     1201 tcaaacgtgt tcctatagtg ctcattacac gcatgagcaa agacagaaat aaggtgcgca
     1261 gcacaaccgt gctgctggtg aggaaagaca ctcgtgttgc tctcgccgga gatggccagg
     1321 tcacactcgg cgagacagtg atgaaagcca gtgccaagaa ggtacgccgc ctctacaacg
     1381 accagattct cgccggtttc gcgggcgcca cgggcgacgc gttttcgttg ttaacccgct
     1441 tcgaagccaa actcgagcag tatcacggca acctcgaacg cgccgcgatc gagctcagca
     1501 aagagtggcg tactgacaag atgttgcggc atctcgaggc gctgctcgtc gtcgccgata
     1561 agaagtcgtc gtttctcttg tcaggcaatg gcgacgtgat cgcgccggac gaaggcgtgc
     1621 tggcgatcgg ctccggcggc tcgtacgcac tggcggccgc gcgcgctttg atcaaacata
     1681 cggatctctc ggcgcgcgac gttgcggtgg aagcgctgcg catcgccgga gagatttgca
     1741 tttattcaaa ccagaacatc gtagttgagg aactgtaagc agttttaatg aaatggttat
     1801 ttatctggca ggagaagttg atgaggaagc tcgactcgac gaaatgtcgc ctcgtcaaat
     1861 cgttactgaa ctcgacaagc acgtcgttgg acaaaaaaac gccaaacgcg ctgtagccat
     1921 cgcgctgaga aatcgcgtgc gaagacaaaa gctgccgcct gaaatggccg tcgacgtgat
     1981 gccgaagaac atcatcatga tcggctccac cggcgtcggc aaaaccgaga tcgcacgccg
     2041 cctcgcgcgc atgtccaact cgccgtttct gaaagtcgaa gcgtcgaagt ttacggaagt
     2101 cggttacgtc ggccgcgacg tcgaaagcat gattcgcgat ttgacggaga tctccgtcga
     2161 gatgacgcgt caggaaaaga gcgaagaggt tgcggagaaa gccgagctca acgtcgagga
     2221 acgaattctc gatctgctgt tgccgccgcc gcgcacgaac gctggttact tcgactttga
     2281 cgccgacacg aacgaggaac aatcgcccga tctcgacagt cccgcgcgtg acgaacagtt
     2341 tcaacgaaca cgcgagaagc ttcgcacgca actgcgcagc gggaagctcg acaatcgcct
     2401 cgtcgaactc gaagtgagag agacaaactt tccggtgatc gagctcgctg gtccacaagg
     2461 cgtcgaagag atgggcatca acatgaaaga catgttgggc aacctgtttc agggccgctc
     2521 gaaacgtcgc aagatgcgcg tcgacgaagc gatggagtac ctgatgcagg aagaggagga
     2581 gcgcctgatc gacatggacc aggtcgcgcg tgctgcgatc gagcgcgtcg agaattcggg
     2641 catcatcttt ctcgacgaga tcgacaagat tgcgggacgt gaatcaggtc acggtcctga
     2701 tgtctcgcgc gagggcgtgc aacgcgacat cctgccgatc gtcgaaggga cgaccgtgaa
     2761 cacgcgttac ggaatggtgc gcacggacca cattctcttc gtcgccgcgg gtgcgtttca
     2821 cgtttcgaag ccttcggatt tgattccgga gttacaggga cgttttccga ttcgcgtcga
     2881 gctggagtcg ttgacgattg aagacttcaa acgcattctg acggagccgc gcaacgcgct
     2941 gatcaagcag tatcaggcga tgatggaaac tgaaggcgtg tcgatcgagt ttacgtctga
     3001 cgcgatcgat tcgattgcca acttcgcggc gcaggtcaat cagcaaacgg aagacatcgg
     3061 cgcgcggcgt cttcagacca tcatggaaaa gctgctcgaa gagatcagtt ttgaaggacc
     3121 ggatttggag ccgaagagcc agcggatcga tgcgcattac gtggaaaaca tgctctctaa
     3181 tactgtgaag gaccaggatc tcagccgtta catcttgtga gtctgtgtgc ctgttctgtg
     3241 atctcaccta agaactttct gacttttcta gtggttgtcg tctgctttgc cgcagtcgga
     3301 tgcggcaaac ggcggcctcc cttgcctccg gtcgagcgtg tgcaacagcg caccgagttg
     3361 ctttctggcg cgcagcaagg caatgaagtg atcctcaact ggcccgcgcc gcaacgcaat
     3421 gc
//
LOCUS       DASWTX010001110         2884 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_208609, whole genome shotgun sequence.
ACCESSION   DASWTX010001110 DASWTX010000000
VERSION     DASWTX010001110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2884)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2884)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2884
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208609"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..328)
                     /locus_tag="VGD38_16900"
     CDS             complement(<1..328)
                     /locus_tag="VGD38_16900"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY0729764.1"
                     /translation="MSLLLEGKRAFVTGGTRGIGAAICDIFAREGADVAFSYNSRDDL
                     AAEMSTKIEAYGRRAFNAKISVVDRVGMKKLTRELVEKWGGIDILVNNAAINRGDNFA
                     TTTDRAW"
     gene            complement(382..>2884)
                     /locus_tag="VGD38_16905"
     CDS             complement(382..>2884)
                     /locus_tag="VGD38_16905"
                     /inference="COORDINATES: protein motif:HMM:NF013988.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AMMECR1 domain-containing protein"
                     /protein_id="HEY0729765.1"
                     /translation="IEGAIDPGEPVVLIDDSVSSGISMEEATARLEEAGLRVEGGICL
                     VRFGWYGGYARMQERGYHMEAVYDIWDDFISVMPNEEKPLANPSKWFPRFEWHAEQAP
                     EGLHPAQLARVVIAEYLSSGRLLRAPLTLDQEYDSSGGVWVSLRSRANVHQRFARGGF
                     WHFPHETPGTAAEDAVMGSLSTAAQLAKGDDGGEEGLKIVEQSAIAVTFFGALERCTP
                     GQLDNDRYGIVVRSLERREKMGGALPRMPGIRNEWHQFQHARIKNAKLVSFEPYELFR
                     HDVVKAIEPDAAWQPSGVPIGESIPWHKDTKICGRVAERTRDLVLAQLFERSENTLPV
                     NADLLPKNVDSCYVTVYIDGQLRGCMGTKIRELDQDLKRMAEAAVRDQRFSETPTTDP
                     DAVAVSVSLLYDSLVIGQAAPEEIVNYYRHGEQTLMAFQGEQVGVFLPFVASTWNLDP
                     VSFAKAVLEKAKLSEPPYNWCRLDCTTWLADRNGTWPTLGAFPLRKIDRSPDDLIAHH
                     IALHRRYLLKHLREDGTFFSRYQPFHNRLFEGVDLPRQAYGAWVFARAHRVLGGDDLR
                     NAASAVINSLNQFETETVAVVSFELLALCELPLSDPRRSKIKDLADKLWQRIDLPHGR
                     VTTHFGSDPSPEAFQDYFPGQLLLALANACAEKVTEVDHERLQSSFRYYRHRFRYQRH
                     FGQVTWLLQAFSKWWEITREQAFADFVFEVADWLLGYQQEKSGAFINDHQSETPGYTT
                     AVYLEGLAAALSVTARVPDATRHQAYRRAFANGVAFLDQLIIQERDQSILPSPDFALG
                     GLRQGLYYSEIRTDFVQHSLSALLARIDGPAPFTV"
BASE COUNT          635 a          914 c          752 g          583 t
ORIGIN      
        1 cccacgcgcg gtcggtcgtc gtggcgaaat tgtcgccgcg attgatcgcc gcgttgttca
       61 cgaggatgtc gatcccgccc cacttctcaa ccagttcgcg cgtgagtttc ttcatcccaa
      121 cgcggtccac gaccgagatc ttcgcattga aagcgcggcg cccgtaagcc tcgattttgg
      181 tgctcatttc ggcggccagg tcgtcacgcg agttgtaact gaaggccaca tccgcccctt
      241 cgcgggcaaa aatgtcgcag atggccgcac ctattccacg cgttccaccg gtgacgaacg
      301 cgcgttttcc ctcaagcaaa aggctcactt agctattttt ctcctgattt aagaaccggg
      361 gctagtttat atgacgggcg attaaaccgt gaaaggtgcg ggtccgtcaa ttcgagccag
      421 cagcgcggac agcgaatgct gaacgaaatc ggtgcgaatt tcactgtaat acaggccctg
      481 ccgtaacccg ccgagcgcga agtccgggct gggcagtatc gattgatcgc gctcctggat
      541 aatcaactga tcgagaaacg caacgccatt tgcaaacgcg cggcgataag cctggtggcg
      601 agtggcatcc ggaacccgcg cggtcacaga cagcgccgcc gcaagacctt cgagatagac
      661 cgctgtcgtg taaccgggcg tctctgattg gtgatcgttg atgaaggccc cggacttctc
      721 ctgctgataa cccaacagcc aatccgcgac ctcgaaaaca aaatcggcga acgcctgttc
      781 tcgcgtgatc tcccaccact tgctgaacgc ctgaagcaac cacgtgactt gtccgaagtg
      841 acgctggtag cgaaagcggt ggcggtagta acggaaactt gattgcaacc gctcgtgatc
      901 aacctcggtg actttctctg cacacgcgtt agcaagagcc agcaatagtt gcccggggaa
      961 atagtcttga aaggcttccg gagagggatc ggaaccgaaa tgagtcgtga cacgaccgtg
     1021 ggggagatcg atgcgttgcc acaacttgtc cgcgaggtct ttgattttgg agcgacgggg
     1081 atcagacaaa ggcagttcgc aaagcgctaa cagttcgaat gacactacgg cgaccgtttc
     1141 agtttcaaat tggttcagcg aattaattac cgcgcttgcg gcgtttcgta gatcatcccc
     1201 gcctaaaact cggtgagcac gcgcgaacac ccaggctcca tacgcttgtc gcggcagatc
     1261 gactccttcg aaaagccggt tgtgaaatgg ctggtaacgc gaaaagaacg ttccatcttc
     1321 gcgcaagtgc ttcaacagat aacgacgatg caaggcaatg tgatgtgcga tcagatcgtc
     1381 gggggagcga tcgatctttc gcaaaggaaa cgcgccgagt gtgggccatg tgccgttgcg
     1441 atccgccaac cacgtcgtgc aatccaaccg gcaccagtta tacggaggct cactcagttt
     1501 cgctttttcc aacaccgctt tcgcgaaact caccggatcg agattccatg tcgatgccac
     1561 aaacggcagg aacaccccga cctgctcgcc ctgaaacgcc atcagcgtct gctcgccgtg
     1621 gcgatagtaa ttaacgattt cttccggcgc ggcctgtccg atcacgagcg aatcgtaaag
     1681 cagcgaaaca ctcaccgcca cagcatccgg atcggttgtt ggcgtttcgc taaatcgctg
     1741 atcgcgaacc gcagcctccg ccattcgctt cagatcctga tccagttcgc gaatcttcgt
     1801 gcccatgcag ccgcgcaact gcccgtcgat gtaaaccgtg acgtaacacg agtccacatt
     1861 cttcggaagg agatcggcgt tcacgggcaa cgtgttttcc gaacgctcga acaactgcgc
     1921 caaaacaaga tctcgcgtac gctcggcaac gcggccacaa atctttgtgt ctttgtgcca
     1981 aggaatactc tcgccgatcg gcacgccgct cggctgccac gccgcgtccg gctcgatcgc
     2041 tttcaccacg tcgtgccgaa acagctcgta cggctcaaac gacacgagct tcgcattctt
     2101 gattcgcgcg tgttgaaact ggtgccactc gttccggatg ccgggcatac gcggcaacgc
     2161 gccgcccatt ttttcgcgcc gctccaaact gcgcaccacg atcccgtaac gatcgttatc
     2221 aagctgaccc ggagtgcatc gctccaacgc accgaagaac gtaaccgcga tcgcgctctg
     2281 ctcgacgatc ttcagtccct cttcacctcc atcgtcacct ttcgcgagtt gcgccgccgt
     2341 gctcagcgat cccatcacgg cgtcttctgc cgcagtgccc ggtgtctcat gcgggaaatg
     2401 ccagaacccg ccgcgcgcaa agcgttgatg aacgttcgcg cgcgaacgca gactcaccca
     2461 cacgccaccg ctcgaatcgt attcctggtc caacgttaac ggcgcacgca gcaaccttcc
     2521 cgacgacaag tattccgcaa tcacaacgcg cgcgagctgc gcaggatgca aaccttcagg
     2581 cgcctgctcc gcgtgccatt caaacctcgg aaaccacttc gacggattcg ccagcggctt
     2641 ctcttcgttc ggcatcacag agatgaagtc gtcccagatg tcgtaaaccg cttccatgtg
     2701 atagccgcgt tcctgcatgc gcgcataacc gccgtaccac ccgaaacgca cgaggcaaat
     2761 gccgccttca acccgcaacc cggcctcttc caatcgcgcc gtcgcctctt ccatcgagat
     2821 gcccgagctc actgaatcat cgatgagcac gaccggctca cccggatcga tcgcgccttc
     2881 gatc
//
LOCUS       DASWTX010001111         2236 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_299972, whole genome shotgun sequence.
ACCESSION   DASWTX010001111 DASWTX010000000
VERSION     DASWTX010001111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2236
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299972"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..438)
                     /locus_tag="VGD38_16910"
     CDS             complement(<1..438)
                     /locus_tag="VGD38_16910"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019239 - deaminase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rid family detoxifying hydrolase"
                     /protein_id="HEY0729766.1"
                     /translation="MKRSVLAVVATLATVVCLCSYVEAQTSSKRKAVKTGPPNGIFSP
                     AIIAGDLVFTSGQIGIDPKTGQLAEGMEAQLEQVFRNLTTVLEASGSSIDHVVKATVF
                     LADMNDYNTMNELYRKKFKGDPPARSTVQVARLPRDARIEIEVV"
     gene            complement(435..2063)
                     /locus_tag="VGD38_16915"
     CDS             complement(435..2063)
                     /locus_tag="VGD38_16915"
                     /inference="COORDINATES: protein motif:HMM:NF012686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter family protein"
                     /protein_id="HEY0729767.1"
                     /translation="MIPAIVVFIYLATVVYIGIFAFRRAGGREKAEDYFLASRSLGPF
                     VFLFSLFGTNMTAFAILGSSGHAFANGIVTFGLMASSSGLVIPLTIFLIGTRVWALGK
                     KYGFMTPVQMFRDRWECSHIGTVIFAVQAVLLIPYVIIGIMGGGTTLYTISGGLVPFW
                     FGGAIVAMVVMSYVFFGGMRGTAWVNTFQTVLFLCFGAIALGVIGYGLGGFTAAAEGL
                     KNSPMSFLLTRERISPYYFFSYTFIPLSAIAFPHILIFCLTAKKMNQFKKTVIFYPIC
                     ILAIWLPCVFLGVMANRVTDVPPIKAKQEARRVLATQGRTMEPEQRDALRDQAAGDDV
                     IMLLLQRYAPIWLAGLLGAGIMAAVMASDSQILALSTMFTEDVFAFYGGKRRFGEAVQ
                     VQTGRIFIILITLFAYAVALRAPETIFELAIQYAFSGYAALSPLLVAALFWRGSTKWG
                     ALAVTLWTALTVAAVAVFQEMVPAAAPGTNNVIWSLGGTEVLARTPGGTAIFKFSPVV
                     PMVIGSALLMWLVSLVTRKPAQSTLARYFGGVNQ"
BASE COUNT          549 a          675 c          615 g          397 t
ORIGIN      
        1 gacgacttcg atctcgatgc gcgcgtcgcg cggcagacgt gcgacctgca cggttgagcg
       61 agcgggtgga tcgcctttga attttttgcg gtacagctcg ttcatcgtgt tgtagtcgtt
      121 catgtccgcg agaaacacag tggctttcac gacgtgatcg atactgctgc cggaagcttc
      181 gagcaccgtg gtgagattgc gaaatacctg ctcgagctgc gcctccatcc cttcggccaa
      241 ctgtccggtc ttcggatcga ttccgatctg ccccgacgtg aaaaccagat cgccggcgat
      301 gatggcgggc gagaagatgc cgtttggtgg tccagtcttg acggctttgc gcttggacga
      361 ggtctgcgcc tcaacgtagc tgcacaaaca aaccacggtc gcgagagttg ccacaactgc
      421 cagaactgat ctcttcattg gtttacacct ccaaaatacc tggccagcgt actttgcgcc
      481 ggctttcgtg ttaccagtga aactagccac atcaacaacg ctgacccgat caccatcggc
      541 acgacaggcg agaatttgaa gatcgctgtt ccgcccggag tacgcgccaa cacttccgta
      601 ccgccgagcg accagatcac gttgttcgtt cccggcgcag ccgcgggcac catttcctga
      661 aacactgcaa ccgcagcaac cgtcaacgcg gtccaaagag ttaccgccag cgcgccccac
      721 tttgtacttc cccgccagaa caacgcggcc actaacaacg gcgacaacgc cgcgtaacca
      781 gagaacgcgt attgaatcgc aagctcaaag atcgtttccg gcgcgcgcaa tgcgaccgcg
      841 taagcaaaca gcgtgatcag aatgatgaag atgcgtccgg tctgcacctg gaccgcttcg
      901 ccgaaacggc gtttcccgcc gtaaaaggca aagacgtcct ccgtaaacat tgtcgagagc
      961 gcgaggatct gcgaatcgct ggccatcacc gccgccatga ttcccgcgcc gagcaatccg
     1021 gccagccaaa tcggcgcata acgttgcaac agcaacatga tcacatcgtc gccggctgcc
     1081 tggtcgcgca acgcgtcacg ttgctcgggt tccatggttc ggccctgagt tgcaagcact
     1141 cgacgagctt cctgtttcgc cttgatcggc ggcacatcgg tgacgcggtt cgccatcacg
     1201 ccgagaaaca cacagggcaa ccagatcgcg agaatgcaga tcggatagaa gatcaccgtt
     1261 ttcttaaact ggttcatctt cttcgccgtc aggcagaaga tcaggatgtg tggaaacgcg
     1321 attgccgaaa gcggaataaa cgtgtagctg aagaagtagt aaggcgagat gcgttcgcgc
     1381 gtcagcagga acgacatcgg cgaattcttc aacccctcgg cagcggcggt aaagccgccg
     1441 agcccatagc caatcacgcc caaagcgatc gcgccgaagc acaaaaacag caccgtctga
     1501 aacgtgttga cccacgcggt gccgcgcatg ccgccgaaga acacgtagct catcacgacc
     1561 atcgcgacga tggcgccgcc aaaccagaaa ggcacgagac cgccgctgat cgtgtagagc
     1621 gtcgtgccgc cgcccatgat gccgatgatg acgtacggaa tgagcaacac ggcctggacc
     1681 gcgaagatca cggtgccgat gtggctgcac tcccaacgat cgcgaaacat ctgcaccggc
     1741 gtcatgaagc cgtacttctt cccgagcgcc caaacgcgcg tgccgattag aaagatggtc
     1801 aacgggatca cgagccctga cgacgaggcc atcaggccaa acgtgacgat gccgtttgcg
     1861 aacgcatggc ccgacgagcc gaggatcgca aacgccgtca tgttcgtgcc aaagagtgaa
     1921 aacagaaaca cgaatggacc aagcgaacgg ctcgccagaa agtagtcttc agctttttcg
     1981 cgtccgcccg cgcggcgaaa agcaaagata ccgatgtaga cgactgtcgc gaggtagatg
     2041 aaaactacga tggcaggaat caagcggcct catcctccgt gtgcgtcttt tcttcaactt
     2101 cacgttcgag gtgagaaggc caggcgaagg tgaccaggag ccacatcagc aacgcagcgg
     2161 cgattgaaaa tatcccctga tagaagaggc caatgggaat gaaaccgaaa accagatacg
     2221 aactccgcca gaacca
//
LOCUS       DASWTX010001112         1840 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_389158, whole genome shotgun sequence.
ACCESSION   DASWTX010001112 DASWTX010000000
VERSION     DASWTX010001112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1840
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389158"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            242..610
                     /gene="rsfS"
                     /locus_tag="VGD38_16920"
     CDS             242..610
                     /gene="rsfS"
                     /locus_tag="VGD38_16920"
                     /inference="COORDINATES: protein motif:HMM:TIGR00090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEY0729768.1"
                     /translation="MTALHAGSEKKAIDPVVLDLRDIASFTDYFVIFSGANERQVQAI
                     SDEVYETLKKAGEPAARVEGYKTAEWILLDYGDFVVHVFEQKARKFYDLERLWRESKR
                     VTLPAEFTGVEGSSSLRKES"
     gene            607..1530
                     /locus_tag="VGD38_16925"
     CDS             607..1530
                     /locus_tag="VGD38_16925"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY0729769.1"
                     /translation="MIELFARSPGMREAVGLAERVSSTGANVLITGESGAGKDLLASY
                     IHSKSPRAAQPFVKIDCATLPGELIEAELFGYERGAFTGASEAKPGRFEAAQKGTIVL
                     DEIAHLSTDAQAKLLRVIETREFERLGGRKTIKVDARLIALTNVDLPAAVKAGRFRED
                     LFYRLDVIQIRIPALRDRREDLSKLIQHFLKHYSAKHGRRVERVSAPALALLQAYDYP
                     GNVRELGNIVERLVIVATGKSIEEQDLPLGLIAAVNAQRKRQNPPSLAELEASYISEI
                     LAKTNGNKTECARILGISRKNLYEKIARYGL"
     gene            1563..>1840
                     /locus_tag="VGD38_16930"
     CDS             1563..>1840
                     /locus_tag="VGD38_16930"
                     /inference="COORDINATES: protein motif:HMM:NF014629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEY0729770.1"
                     /translation="MRFRIIWTGKTRDARLRSLIEDYAGRLSHFVRCEVTELKEPRRT
                     DKTGIDHETKRISDALRTGSFTVLLDPAGAEWTSHELAAQVQSWENNGV"
BASE COUNT          424 a          461 c          568 g          387 t
ORIGIN      
        1 cggcgacaag cattcgccgg cttgcgagcg aagggcgcca cgacgagttg cacgatttag
       61 tacctcaacc agtggccaat tacataaaga agtacgggat ttatcgagat ttcgaatgaa
      121 gcaaaactca tcagtcaaag aacagtctct gcatcctcaa gcgaacgcgc gaccgcagag
      181 tgaaaccccg gccgcaattg ccggatccga aactgaggcc cagcaactgg acgagcgcgt
      241 attgacagcg cttcacgccg ggagcgagaa gaaggcgatc gatccggtcg tgttggacct
      301 gcgcgatatc gcgagcttca ccgactactt cgtgatcttt agtggcgcga atgagcgtca
      361 ggtgcaggca atctccgatg aagtttatga aacgttgaag aaagccgggg agcctgccgc
      421 gcgcgttgaa ggttacaaga ccgccgagtg gattcttctg gattacggcg acttcgtggt
      481 ccatgtcttc gagcagaagg cccgcaagtt ttacgatctt gaaaggctgt ggcgtgagtc
      541 gaagcgcgtt actctgccgg cggaattcac tggcgttgaa gggtcgagtt ctttgagaaa
      601 agaatcgtga tcgaactgtt tgcgcgctct cccggcatgc gcgaggcggt tggtctcgcg
      661 gagcgcgtca gttctacggg tgcgaacgtt ttgataacgg gtgagtcggg agcagggaag
      721 gacctgcttg cttcttacat ccactcgaaa tcaccgcgcg cggcccaacc gtttgtgaag
      781 atcgattgcg caacgcttcc gggcgagctg atcgaagcgg aactgtttgg ctacgagcgc
      841 ggcgcgttca ccggagcttc ggaagcaaag cccgggcgat ttgaagctgc gcaaaaagga
      901 acgattgttc ttgacgagat tgcgcatctc tcgactgatg cgcaggcgaa gttgttgcgc
      961 gtgattgaga cgcgtgagtt tgaaaggctc ggcggccgca agacgatcaa agtagatgcg
     1021 cggctgattg ccttaacgaa tgtagatctt ccggcggcag ttaaagccgg acgctttcgc
     1081 gaagatctgt tttatcggtt ggacgttatt caaattcgta tccccgcgtt gcgtgatcgc
     1141 agggaagatc tttcaaaact gattcagcac ttcctgaagc attactccgc gaagcatgga
     1201 agaagagtgg agcgcgtgtc cgctcctgcg ctcgcgttgc ttcaggctta cgactatccg
     1261 ggaaacgtac gcgagctcgg aaacatcgtt gaacgcctgg tgatagtcgc gaccggaaag
     1321 tccatcgaag aacaggattt gccgcttggt ttgattgccg cggtcaatgc gcagcggaag
     1381 cggcagaacc ccccgagtct cgccgaattg gaagcatcgt acatttcgga gatcctcgcg
     1441 aagacaaatg gcaataagac cgagtgtgcg cgaatactcg gtatcagtcg caagaacctg
     1501 tacgagaaga ttgctcgcta cgggctctga gacccctgaa ttttgcgcgg cggataagcg
     1561 ggatgcggtt tcggattatt tggacaggga aaacacgcga cgcccgcctg cgctcgctca
     1621 ttgaggatta cgccggacgg ctttcgcact ttgtgcgttg tgaagtgacg gagctgaagg
     1681 agccccggcg tacagacaaa acgggcatcg atcacgaaac taagcgcatc tcagacgcgc
     1741 ttcgtaccgg gtcatttacg gtgcttttgg atccggcggg cgcggagtgg acgtcacacg
     1801 agctggcggc gcaggttcag agttgggaaa acaatggcgt
//
LOCUS       DASWTX010001113         2283 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_186658, whole genome shotgun sequence.
ACCESSION   DASWTX010001113 DASWTX010000000
VERSION     DASWTX010001113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2283)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2283)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2283
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186658"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..623)
                     /locus_tag="VGD38_16935"
     CDS             complement(<1..623)
                     /locus_tag="VGD38_16935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729771.1"
                     /translation="MTIRKMLSKTDPRTEYLRRIDERRASTTRLMQRFRKIGFIRLGF
                     LAVGLILLWFVVFSNLSGWWLVFPAVVFVALGRVQARITEARLRCERAARLYEQGLAR
                     LDDRWAGTGATGDRFSDPAHPYGQDLDLFGRGSLFELLSIARTDTGEETLARWLLTPA
                     DIDVVRARQEAVTELRPKLDLREDLALLGEGVPSGESARGLSAWANEP"
     gene            720..1268
                     /locus_tag="VGD38_16940"
     CDS             720..1268
                     /locus_tag="VGD38_16940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729772.1"
                     /translation="MKTAIRTFLVVAVACAIAVAQDQNKPLAEAFEKRVKEYTKLRED
                     IEGKMPKLSKEAKPEEIETHKKRLQESVRAARAGAKHGDIFTPDAAAMIRNIIKEEYK
                     GKDRVELRKAVLVEAEVKSVPLRINYPYPEAKEQLEMPPTLLLKLPQLPKQIRYRFVG
                     DNMLLVDRENGLIVDYMTNAIP"
     gene            1290..2180
                     /locus_tag="VGD38_16945"
     CDS             1290..2180
                     /locus_tag="VGD38_16945"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY0729773.1"
                     /translation="MKRIITSLVLTFLLTLPIANAQKPSANHGNTATPAVTLTLPNKD
                     NSVRFLVIGDTGTGTDKQHELAQVMLRYRQSFPFEFVLMMGDNMYGSEKTGDYKKKFE
                     DVYRPLLDQKVKFYAALGNHDESNQRFYEFFNMDGQEYYRFTKGNVSFYGLNSNYMDK
                     KQIDWLNDKLAADTSDWKVAYFHHPPYSSGAAHGSDKKLREIVEPIFVKNGVDVVFAG
                     HEHFYERIKPQKGIYYFISGSGGKLRKGDVKKGSTLTAKAFDGDMSFMLVEVNGDQMH
                     FQVISRTGETVDSGVIGRAK"
BASE COUNT          592 a          644 c          611 g          436 t
ORIGIN      
        1 ggttcgttgg cccacgcgga aagtccgcgc gcactctcgc cggaaggaac accttcgccg
       61 agcagcgcca ggtcctcgcg gagatcgagc ttcggccgta actcggtcac agcttcctgg
      121 cgagcgcgca cgacgtcaat gtctgcaggc gtcaacaacc aacgagcaag agtctcttca
      181 cccgtatcgg tgcgggcgat agaaagcagt tcaaatagag agccacgccc gaagagatcg
      241 agatcctggc cgtaaggatg cgccgggtcg ctgaacctgt cgccggttgc tcccgtcccg
      301 gcccaacgat cgtcgagccg tgcgagtccc tgttcgtaaa gccgagccgc acgctcgcaa
      361 cgcagccgtg cttcagtgat tcgcgcctgc actctcccca gtgcgacaaa cacgacagcc
      421 gggaacacga gccaccagcc agacaaattg ctgaagacga caaaccacag caggatcagt
      481 ccaacggcca gaaagcccaa tcggatgaag ccaatcttgc gaaaacgctg catgagccgc
      541 gttgtacttg cgcggcgctc atcgatgcgg cggagatatt cagtacgggg atccgtttta
      601 gagagcattt tgcgtatggt catagtacgc gaatgactta gaatatttca tcacctcagt
      661 ccaacttttc tctagtgctt ttactcgcaa cggtattctg cttgcctttc atacctcacg
      721 tgaaaacagc aatcagaaca tttttagtcg tcgcagtcgc gtgcgcgatt gcagtagctc
      781 aggaccagaa caaaccactc gccgaagctt tcgaaaagcg cgtcaaggag tacaccaaac
      841 ttcgcgaaga catcgaaggc aagatgccga agctctcgaa ggaagcgaaa ccggaagaga
      901 tcgagacgca caagaaacgc cttcaggaat cggtgcgcgc cgcacgcgcg ggcgcaaagc
      961 acggcgacat tttcacaccc gacgcagcgg cgatgatccg caacatcatc aaagaggaat
     1021 acaaaggaaa ggatcgcgtc gaacttcgca aagcagtgct ggtggaagcg gaagtgaaat
     1081 cagtaccact gcgaatcaac tacccgtatc cggaagcaaa agagcagttg gaaatgcctc
     1141 cgacgctgct gctgaagctc ccgcaactgc ccaaacagat tcgctatcgc ttcgtcggcg
     1201 acaacatgct gctggtcgat cgcgagaacg gactgatcgt cgactacatg acgaacgcta
     1261 taccttaatc gaactatggg aaggtaacta tgaaacgcat tatcacttca ctcgtcttaa
     1321 cgtttctctt aactctcccg atcgcgaacg cccaaaagcc ttccgcgaac cacggaaaca
     1381 ctgccactcc ggcagtcaca ctgactctgc ctaacaagga caactccgtt cgcttcctcg
     1441 tgatcggcga cacgggcacg ggcaccgaca agcaacacga gctggcccag gtgatgcttc
     1501 gctatcgtca gtcgttcccg ttcgagtttg tgctgatgat gggcgacaac atgtacggca
     1561 gcgagaaaac cggcgattac aagaagaagt ttgaggacgt ctatcgtccg ttgctggacc
     1621 agaaagtaaa gttttacgcc gcgcttggta atcacgacga gtcgaaccag cgcttctacg
     1681 aattcttcaa catggacggc caggagtatt accgtttcac gaaaggaaac gtcagcttct
     1741 acgggctaaa cagcaactac atggacaaga agcagatcga ctggctcaac gataaactcg
     1801 ctgccgacac gtctgactgg aaggtcgctt actttcatca tccgccgtat tcatcaggcg
     1861 ccgcgcacgg ctctgacaag aagctgcgcg agatcgtcga gccgatcttt gtgaagaacg
     1921 gagtggacgt tgtctttgcc ggacacgaac acttctacga acgaatcaag ccgcagaaag
     1981 gcatctacta cttcatctcc ggctcgggcg gaaaactgcg caagggcgac gtgaagaaag
     2041 gctcaacgct gacggctaaa gctttcgatg gcgatatgtc gttcatgctg gtcgaagtca
     2101 acggcgatca gatgcacttc caggtgatct cgcgaaccgg agagactgtt gactcgggcg
     2161 ttataggaag agcgaagtaa actacggcgc gagccatgaa gcgaggttcg cgacgtaggt
     2221 tttgatgtcg cgcatccgtg atggatcgcg cctgatctca tcgccgggcg gttcgataag
     2281 aaa
//
LOCUS       DASWTX010001114         4548 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_252175, whole genome shotgun sequence.
ACCESSION   DASWTX010001114 DASWTX010000000
VERSION     DASWTX010001114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4548
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252175"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..222)
                     /locus_tag="VGD38_16950"
     CDS             complement(<1..222)
                     /locus_tag="VGD38_16950"
                     /inference="COORDINATES: protein motif:HMM:NF012404.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEY0729774.1"
                     /translation="MPRRRVAERREVLPDPVYNSPLVTKFISGVMWEGKKSVAEGIFY
                     DAMRQIGDKTGEEPLKVFKRAIDNVKPTVE"
     gene            complement(244..630)
                     /gene="rpsL"
                     /locus_tag="VGD38_16955"
     CDS             complement(244..630)
                     /gene="rpsL"
                     /locus_tag="VGD38_16955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016293564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEY0729775.1"
                     /translation="MPTINQLVRKGRQQVKYKTASPALQSSPQKRGVCTRVYTQTPKK
                     PNSALRKVARVRLTNGIEVTTYIPGVGHNLQEHSIVLIRGGRVKDLPGVRYHVIRGTL
                     DSVGVADRKQGRSKYGAKRPKASAGK"
     gene            complement(1079..1252)
                     /locus_tag="VGD38_16960"
     CDS             complement(1079..1252)
                     /locus_tag="VGD38_16960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729776.1"
                     /translation="MATYTPPPYFPQGSLAPPDKNRYRKFKLIMTLVAFLVVLVLAGV
                     GFGAWYLFKWAAG"
     gene            complement(1256..1930)
                     /locus_tag="VGD38_16965"
     CDS             complement(1256..1930)
                     /locus_tag="VGD38_16965"
                     /inference="COORDINATES: protein motif:HMM:NF024299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0729777.1"
                     /translation="MTLGYGCNRSGQQSANNSAGPATVSNGLAGDRSQARELLKKGKQ
                     LYLDDQDEEAVKAFQEAVKLDPDLAEAHFRLGLGYEALGKRDESEAEYKKAVETYKKY
                     LDDHPDDSEAHYDLGQTYAGLGQYSDAIREYRQATKLKEDDPDIYYDLGVAHTKLAQY
                     DAAAAAFSKSLELDPDNYRAQDGLDEAKAGIKRIRTGRKHQEDLLKKKKEEELKKAGA
                     LPSPGV"
     gene            2073..3059
                     /locus_tag="VGD38_16970"
     CDS             2073..3059
                     /locus_tag="VGD38_16970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729778.1"
                     /translation="MFRKLPPLLAVVLFVLLGTLPAGAQKKPTASVASAPLKVNLSSN
                     TAMVSACSDVAGSQVQLTAAAVSPDGNPIKYKWTTSGGTISGEGPQVTWNLAGLKAGY
                     HKASLDIVSPGNDGECQAFSSVTVLVTPCAPVRPVCPAVEVTGPSALGVDQPVTFTSS
                     YNGGTPGITPVYNWTVSAGTIVEGQGTDRIKVDTTGLAGQTIRASLSLGGYNLECAAD
                     YAVTMPAPKLISRRFDEFPDIARNDEKARLDNFAIELQNDPSATAYVIVYPGKANKRG
                     EVQEHSGRVVEYLVNSRGLDQRRIVTLVGPKRDQLHVELWLTPQGATPPNPQ"
     gene            3240..4211
                     /locus_tag="VGD38_16975"
     CDS             3240..4211
                     /locus_tag="VGD38_16975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729779.1"
                     /translation="MVRTKSAYWLSLLLLLLALPVSVAAQDKDKDKDKKEKKVYTGTP
                     VMWRAPEDIEQRNLLLGAGGNEMKPDISRITYIEDKTGGYSKKYRVQDAKGNEWVAKI
                     GKEAQSDTAANRLLWALGYETEIAYLIPKLRIEGKGDFENVRLEARPKSVKRTGNWMW
                     ENNPFMGKPEFKALKILMVMINNWDMKDDNNEILARRGDTTGEGELRYIISDLGGSFG
                     KTGGFFSRTRNEPEDYQKSEFIKKVNGDVIDFNYGGKNQKLFANITVADAQWLATWLK
                     RLSDEQIKDAFRAANYTPEEVNTLAAAFRARANALANPTSAVAAQSN"
     gene            complement(4272..>4548)
                     /locus_tag="VGD38_16980"
     CDS             complement(4272..>4548)
                     /locus_tag="VGD38_16980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729780.1"
                     /translation="VPQDLTQLVRAINTVKKSDRLYVKLFRITNGAVIGTSELPNLPP
                     SVVATLNSDRTSGGYTPTVLSPVFEMELPPAEFVISGQQLIAIDVVR"
BASE COUNT         1015 a         1349 c         1220 g          964 t
ORIGIN      
        1 ttcgaccgtc ggcttgacgt tgtcgatggc tcgtttgaaa accttcagcg gctcttcacc
       61 ggtcttgtca ccgatctgcc gcatggcatc gtaaaaaatg ccttccgcca cgctcttctt
      121 gccttcccac atcacgccac tgatgaactt cgtcaccagc gggctgttgt aaaccggatc
      181 gggaagtact tcgcgtcgtt cagctactcg tcgtcttggc ataaatgttt ctcgttaact
      241 cgcttacttg ccagcgcttg ctttcggccg tttcgctccg tacttcgagc gtccctgctt
      301 gcgatcggcc acgccgaccg aatcgagcgt gccgcgaatg acgtggtaac gcacaccagg
      361 caaatccttc acgcggccgc ctctaataag gacaatcgag tgctcctgaa ggttgtgacc
      421 gacgccgggg atgtaggtcg tcacctcgat accgttggtc aggcggacgc gcgccacttt
      481 acgcagcgcc gaattcggtt tcttcggcgt ctgggtgtaa acgcgagtac aaactccacg
      541 cttctgaggc gaactctgga gcgcggggct ggccgttttg tacttgacct gctggcggcc
      601 tttgcgaaca agctgattaa tcgtcggcac tgttttcctc ttaatgcgtc gcgcgttcag
      661 acgcgcaaaa aggccccttg cctgcctctt tccggaacca gtccggcagt cagcgcaggc
      721 ggctgccctg tttagaaatt tgttattagg gatgttctga cttcgctgtt aacgcggtgg
      781 gcgtggatcg tggcttccct tgagccgaaa cttttctgtg gcgtcgcttc ttttggcgag
      841 aagtaaaact tccacgcgag tacacgctgg aatgaccggc tcccactgca aaactgccag
      901 ccggcgcgta ctgtttacgc cacaataact gtcaaacgac cgttctcgct tggtcgggca
      961 acgcctccac acctacagaa ccaactggac gctgccttac gggtttcaga ctgaatgtcc
     1021 gaaacggcag actatacggg tgcgggccaa ttgtgtcaag cgcccgttcc catttaactt
     1081 agcccgccgc ccacttgaac aaataccagg cgccgaagcc cacgcccgcc agcacgagca
     1141 ctaccaaaaa cgcgactagc gtcatgatga gcttgaactt gcggtagcgg ttcttgtcgg
     1201 gcggcgcgag cgaaccctgg gggaaatacg gcggtggtgt gtaagtagcc ataatttaaa
     1261 ctcccggact cggcagtgcc ccggctttct tcaactcttc ttccttcttc ttcttcaaca
     1321 agtcttcctg atgcttccgg ccggtacgaa tgcgcttgat gcccgctttc gcctcatcca
     1381 gaccgtcctg cgcccggtag ttgtccggat cgagctccag cgacttcgaa aacgccgccg
     1441 cggccgcgtc atactgcgcc aacttcgtgt gcgcgacgcc gagatcgtag taaatatccg
     1501 ggtcgtcctc tttcaacttc gtcgcctggc gatactcgcg aatggcgtca ctgtactgac
     1561 ccaatcccgc gtaggtctgt cccaggtcgt agtgcgcttc ggaatcgtcc ggatggtcgt
     1621 cgaggtattt cttgtaagtc tcgactgcct tcttatactc ggcttcggac tcatcgcgtt
     1681 taccgagcgc ctcgtaaccc agaccgagac ggaagtgcgc ctcagccaaa tcgggatcga
     1741 gtttcacggc ctcctgaaac gccttgaccg cttcttcgtc ctgatcgtcg aggtacaact
     1801 gctttccctt tttcagcagt tcccgcgcct ggctgcgatc acccgccaaa ccgttggaca
     1861 cagtcgccgg tccggcacta ttattcgcag actgctgccc gcttcgattg caaccgtagc
     1921 ccaacgtcat tacgcacagg gcgcagatta tgagagtcag tctcatttag agaaaattat
     1981 ctaacgcaaa tttcgatagc gagtcaaaca ccggaagccc cagttgattg acagtttctt
     2041 cctatcgaat cgtttttccg caaggagtgc acatgttcag gaagctgccc ccgcttttag
     2101 ctgtcgtttt gttcgtcctg ctcggaacgc tgccggccgg cgctcaaaag aagcccacag
     2161 catcagttgc gagcgccccg ctcaaggtca atctatcgtc gaatacggcc atggtcagtg
     2221 cctgtagcga tgtagcagga tcgcaggttc aactaaccgc ggctgccgtt tcgccggacg
     2281 gtaatccgat caagtacaag tggacgacca gcggtggaac gatttccggc gaaggtccac
     2341 aagtgacctg gaacctcgcg ggtttgaaag ccggctatca caaagcgtcg ctcgatatcg
     2401 tgagccccgg caacgatggc gagtgtcagg cgttttcatc cgtgaccgtg ctcgtcacgc
     2461 cttgcgcgcc tgtgcgtccg gtgtgcccgg cagttgaggt cactggccca tcggcgctcg
     2521 gcgtcgatca accggtaact ttcacgtcaa gctacaacgg gggcacgccc ggcatcactc
     2581 cggtttacaa ctggacggtc tcggccggaa ccatcgtcga aggccagggc accgaccgga
     2641 tcaaagtcga caccaccggt cttgcaggtc aaacgattcg cgcctcgctt tcactcggcg
     2701 gctacaacct cgagtgcgcg gccgattacg cggtgaccat gcccgcgccg aagctcatca
     2761 gccgccggtt cgatgaattt ccggacatcg cccgcaacga cgaaaaagcg cggctcgaca
     2821 acttcgcgat cgaattgcag aacgatccgt cggccactgc ctacgtcatc gtctatcccg
     2881 gcaaggccaa caaacgcggc gaagtgcagg aacattccgg ccgcgtcgtc gagtatctcg
     2941 tcaattcacg cggtctggac cagcgccgca tcgtgacgct cgtcggcccg aaacgagatc
     3001 aactccacgt cgaactctgg ctcacgccgc aaggcgcgac gcccccgaat ccgcaatagc
     3061 atccttaatc agtctgcttt ccccgtaaaa ctggacgccg cggtcccaag ccgcggcgct
     3121 ttttgtacag ggattgcttt agcctaagat agctgagacc tttcagcccg tttgtgcgcg
     3181 tttacaagac ggagaccaaa ggtcttgtac cagaaaatta cagtgggaga ttagagatca
     3241 tggttcggac taaatccgct tattggctga gcctcttatt gttactgctg gcattgcccg
     3301 tgtcggtagc cgctcaggac aaagacaaag ataaagacaa gaaggaaaag aaggtttaca
     3361 cgggaacgcc cgtcatgtgg cgcgcgcccg aggatatcga gcagcgcaac ctgctcctcg
     3421 gcgcgggcgg caacgagatg aagcccgaca tcagccgcat aacctacatt gaagacaaga
     3481 ccggcggtta ctccaagaag tatcgcgtgc aggacgccaa aggtaacgag tgggtcgcga
     3541 agatcggcaa ggaagcacag tcagacacgg ccgccaaccg cttgttgtgg gcgctcggct
     3601 atgaaacaga gatcgcctat ctcatcccga aattgaggat tgaaggcaaa ggcgactttg
     3661 aaaacgttcg cctcgaagcg cggcccaaga gtgtgaagcg aaccggcaac tggatgtggg
     3721 aaaacaaccc gttcatgggc aagcccgaat tcaaggcgct caagatccta atggtcatga
     3781 tcaacaactg ggacatgaag gacgataaca acgaaattct cgcaaggcgt ggcgacacca
     3841 ccggggaggg agaattacgt tacatcatca gcgatctcgg cggttcgttc ggtaagacgg
     3901 gcggcttctt ctcgcgcacc cgcaacgagc ctgaggatta ccagaagtca gagttcatca
     3961 agaaagtaaa cggcgacgtg atcgacttca attacggcgg aaagaaccag aagctttttg
     4021 cgaacatcac cgttgccgac gcgcagtggc tggcaacctg gctgaagcgt ttgagtgacg
     4081 agcagattaa ggacgcgttt cgcgcggcga actacacgcc tgaggaagtg aatactttag
     4141 cggctgcgtt ccgcgcccgt gcgaatgcgc tggcaaatcc gacaagcgca gtagcagctc
     4201 aaagcaacta acaaaagcaa aaccacagac tacacagaga accaaaaaat ctgtgtagtc
     4261 tgtggctgaa actaccgcac tacatcaata gcgataagct gttggcccga aatcacaaac
     4321 tccgcgggcg gcaactccat ctcaaacaca ggtgacaaaa cagtgggcgt ataaccacca
     4381 gacgttcggt cgctattcaa cgtcgcgaca accgacggcg gcaagttcgg cagttcgctg
     4441 gtgccaatca ccgcaccgtt cgtgatgcga aacagcttca cgtacaaccg gtcgctcttc
     4501 ttcacggtgt tgattgcccg aacgagttga gtcagatcct gcggcaca
//
LOCUS       DASWTX010001115         2298 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_106537, whole genome shotgun sequence.
ACCESSION   DASWTX010001115 DASWTX010000000
VERSION     DASWTX010001115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2298
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106537"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            575..1483
                     /locus_tag="VGD38_16985"
     CDS             575..1483
                     /locus_tag="VGD38_16985"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY0729781.1"
                     /translation="MSEANSQLKEQVRAFWQEHPCGTKFADAQPGSRRFYELVEEHRY
                     TKEWHSPAAAGFADTKDLDVLEIGCGLGTDGAQFARAGANYTGIDLTEAAVDLARRRF
                     EISNLPGTFRVADAERLDFPDNSFDVVYSHGVLHHTPDTRAAVREVHRILRPGGRAVV
                     MLYHRDSYNYRVNISVLRRAGVHLLRWNAGVKLVRALTGESEESLREHARQLRSDRDY
                     LSSNEFLSRNTDGAGNPLARVYSRKEARELFSDFATVELRPYFLNKRWLPILGPVLPR
                     SIEAKLASRWGWHLWIYAQKGATKGR"
     gene            1480..>2298
                     /locus_tag="VGD38_16990"
     CDS             1480..>2298
                     /locus_tag="VGD38_16990"
                     /inference="COORDINATES: protein motif:HMM:NF014740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY0729782.1"
                     /translation="MKNFLVTGGAGFIGSHLVDRLLGYDVDQITVVDDFNNFYEPQIK
                     RENISEHLKDPRYKLAEADIRDRSALDRLFSENRFDCIVHLAARAGVRPSLSEPQLYT
                     ETNINGTVNLLELARQHGIKQFVFGSSSSVYGINAKVPFSEDDPIRQPISPYAATKAA
                     GELLCHTYSHLYGLRCVCLRFFTVYGPRQRPDLAIHKFAKLISQNKPIPVFGDGTTRR
                     DYTYVDDIIDGVVAAIHYDKSNYEVFNLGESRTVELRELISLLEKELDTHATIDR"
BASE COUNT          516 a          688 c          604 g          490 t
ORIGIN      
        1 tcaagagaaa gtccttctcc accccgtgac cggcattggt tacgagcagc gtcagaatct
       61 ccgccgcttt cggtgtgagc gaaatcgtct cgccttcgcg cgtcaggcgg cggctagaaa
      121 gattgaggtg gtatggtcca aattcgtagt tgaggtcttg gctgtgaggt atgtacaccg
      181 tgagttagtg ctccgctttg agaacaattt gataactttt gattttcctc taaagatttt
      241 ctgtttgtag tgtgagtata gttcgcccgt cgtcaaacgc tgctgctatt taacaggctg
      301 cgtgattcta cgagcaagtc tcacgaatgg caagaaccga gaatgtctcg atgatgcgtt
      361 tgatccggcc cagttgagag agggggcaat gtcaactggt ggacaggtgg gtgtccttag
      421 ccggatttgg gatcctcacc ccagcgatct tcgctgttct tgtgccgcat ggcggcttcg
      481 cccagcaaga ctggccgtgc ggtacaagac agcggagtaa accccgtctt tgtctcgaca
      541 cttctccggc tgttatgctt cagacgcttt cacgatgtct gaagcgaatt cccaactcaa
      601 agaacaagta cgagcgttct ggcaggagca tccctgcggg accaagtttg ccgacgcgca
      661 gccaggctcg cgccgctttt acgagcttgt cgaagaacat cgctacacga aagagtggca
      721 cagtcccgcg gcagcaggtt tcgctgacac aaaagatctc gacgtgctcg agattggttg
      781 tggactcggg accgatggtg cgcagttcgc aagagccgga gcgaattaca ccggaatcga
      841 tttgaccgaa gccgcagtcg atctcgcgcg gcgccgtttc gagattagca atctaccggg
      901 aacgttccgc gttgcggacg cggagaggct ggattttccg gacaattcgt tcgacgtggt
      961 ctattcacac ggcgtgttgc atcacacgcc cgacacgcga gctgcggtgc gcgaagttca
     1021 tcgcattcta cgtcccggcg gccgcgccgt cgtaatgctt tatcaccgcg attcgtataa
     1081 ctaccgcgtc aatatctccg tgctgcggcg cgccggcgta cacctgctgc gttggaacgc
     1141 cggcgtaaaa ctcgtgcgcg cgctcaccgg cgagagcgag gaatcgctgc gcgaacacgc
     1201 gcgacaactc cgatccgatc gcgattacct aagttcgaat gagtttttga gccgtaacac
     1261 cgacggcgcc ggcaatccac tcgcgcgagt ctattcacgc aaagaagcac gcgaactttt
     1321 cagcgacttc gcaacagtcg aactccgccc ttacttcctc aacaaacgct ggctgccgat
     1381 actcggtccc gtgctcccgc gctccatcga agccaaactc gcctccagat ggggctggca
     1441 cttgtggatt tatgctcaaa aaggggctac aaaagggcga tgaagaattt tctcgtaacc
     1501 ggcggcgcag ggttcatcgg ctcgcatcta gtcgacaggt tgctcggcta cgatgtcgat
     1561 cagatcacag ttgttgacga cttcaacaac ttctacgaac cacaaattaa acgcgaaaac
     1621 atcagcgaac acctgaaaga cccgcgctac aaactcgccg aagcagacat tcgcgatcgc
     1681 tccgcactgg accgactttt cagcgaaaac cgtttcgact gcatcgtaca cctggccgcg
     1741 cgcgcgggcg tccgcccttc gctcagcgag ccgcagctat acaccgaaac caacatcaac
     1801 ggtaccgtca atctcctcga gctcgcgcgc cagcacggca tcaaacagtt cgtcttcggt
     1861 tcgtcgtcat ccgtctacgg catcaacgcc aaggtcccat tcagcgaaga cgatccgatt
     1921 cgccaaccca tctcgcccta cgcggcgacg aaagcagcag gcgaacttct ttgtcacacg
     1981 tattcgcatc tctacggtct gcgctgcgtc tgcctgcgct ttttcaccgt gtatggacca
     2041 cgacagcggc ccgatctcgc gatccacaag tttgcaaaac tgatcagtca aaacaaaccg
     2101 attcccgtct tcggcgacgg caccacgcgc cgcgattaca cctacgtcga cgacatcatc
     2161 gacggcgtcg tcgcagccat tcattacgac aagagcaact acgaagtgtt caatctcggc
     2221 gagtcgcgca cggtcgaact acgcgaacta atcagcctgc tggaaaaaga gctcgacacc
     2281 cacgccacaa tcgatcgc
//
LOCUS       DASWTX010001116         3303 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_186672, whole genome shotgun sequence.
ACCESSION   DASWTX010001116 DASWTX010000000
VERSION     DASWTX010001116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3303
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186672"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(81..1457)
                     /locus_tag="VGD38_16995"
     CDS             complement(81..1457)
                     /locus_tag="VGD38_16995"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF013640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HEY0729783.1"
                     /translation="MTRASLIAYLSTPPSPDGRELSALPSTVEFVALRPGAVDPEWVG
                     RHFSGSVLYELDVEDGLNETLLSRIPVEQRIVSWGGEASTLADLQTAFAELAKVPARF
                     YKLVNKARTIAEEFLPLHLLKSLNRTDTIAYANGSLGFWTRLAALQLGAPAIFGLASP
                     GTNPSEPTIAKLIVDYGLPEVHPVKELFAIIGNPIFHSLSPRLHNSSYRDMNHAALFV
                     PLQVDSFEDFWREFVQSKQLDAFGFPINGMTVGSPHKEEAFRTAKNVSSMVQQTQAAN
                     ILVRNNGWWRADTTDPDVVYAASNMQNVRVREKRAAVIGCGGAGRAIAAALAESGAGV
                     TLINRGAERGEYAASLLGLPYQPLLDFDAEGYDIVVNATPVGRDTDEAPFKLERLNSN
                     AVVIDLVYGSRPTPLIGSTNARQVAIEGRDVLVTQVRNQFRLMTGKEMSAALAFKVLG
                     PLSSNGKH"
     gene            1746..3257
                     /locus_tag="VGD38_17000"
     CDS             1746..3257
                     /locus_tag="VGD38_17000"
                     /inference="COORDINATES: protein motif:HMM:NF012506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/2-methylcitrate synthase"
                     /protein_id="HEY0729784.1"
                     /translation="MDTTFSVLPPAPDYNPVKQAIARADELGEKSIATTLGYFSTMPS
                     STDIIANPVLYHTPVDCNGTQITLDIRSFTIRGIIPEADILTGKAGPIDVIFTGLFAD
                     APGSAAGKETLDRLVNDKFFEVVRGDGQLVNMVAAFVKKYPRLGPEVAMQHIATLRKA
                     RVGRPENSGIHDERDSGELLRDMIACHMDNVAVGGVSAYMNYLLTGNAQLSESELAAG
                     TNEFISAEVQRGRNAFQVSYSLILGRHASDHESLILERMGTIQIHHGSAGSNMVARYM
                     ATLHTLSVSDFFTASQMALDGARHFGAIHDMSDFVQELEPLTGEERAKRIREKVLTGG
                     LPTFGHPEISAAGRGNQVQQDPRPAIYIAPVFDAIDAGELTLTKAQQDRLSIARLIYQ
                     TAFVNGVLKPQREHEAPLRLTANTDFGAWCVQEALGIEEADRTLLTYIFRGFGWMMDA
                     REQLQQKMIRPVIAPNPKIVPKSSDDPTIPDLVARVHSRLSSDGNPFSPQGER"
BASE COUNT          693 a          881 c         1020 g          709 t
ORIGIN      
        1 tcctgttgct caaggctcaa atcgagcagg gcgtagatcc caggtgtgtg gttgatgtcg
       61 gcgggcgtag ttgtcattag ttaatgtttg ccgttggagc tcagtggtcc gagcactttg
      121 aaggccaaag cggcggacat ctcttttccc gtcatcaggc gaaactgatt gcgcacttgc
      181 gtcaccagca cgtcgcggcc ctcgatggcc acctggcgcg cgtttgtgct gccgatcagc
      241 ggcgtcggcc gcgagccgta gacgagatcg atcacgacag cgttgctgtt caaacgttcg
      301 agcttgaatg gcgcttcatc cgtatcgcgt ccgaccggtg ttgcgttgac gacgatgtcg
      361 taaccttcgg cgtcaaagtc taatagcggt tggtagggta agcccagcaa cgaagcggca
      421 tactcgccgc gttccgcgcc gcgattgatc aacgtgacgc ccgcgcctga ttcggctaac
      481 gcagcagcaa tcgctctgcc cgcgccgccg cagccgatca cggccgcgcg tttttcgcga
      541 acgcgaacgt tttgcatatt gctggccgcg tagaccacgt cgggatcggt cgtgtcggcg
      601 cgccaccagc cgttgttgcg gacgaggatg ttggcggcct gtgtttgttg gaccatcgag
      661 ctgacgttct tggcggtgcg aaaagcttct tctttgtgcg gtgagccgac cgtcatgccg
      721 ttgatgggaa acccaaacgc gtcgagctgt ttcgactgca cgaactcacg ccagaagtct
      781 tcgaaggagt cgacctgcaa cggcacgaac agcgccgcgt ggttcatgtc gcgataggag
      841 gagttgtgca gccgtggcga gagcgagtga aagatcgggt tgccgatgat ggcgaaaagc
      901 tctttgaccg gatgcacttc gggcaggccg taatcgacga tcagcttcgc gatcgtcggt
      961 tcgctcgggt ttgttcccgg tgacgcgaga ccaaagattg ccggtgcgcc tagctgaagc
     1021 gccgcgagcc gtgtccagaa tccgagcgaa ccgttcgcat aggcgatggt gtcggttcga
     1081 ttcagagatt tgagcagatg cagcggtaga aattcttcag cgatggtcct ggccttgttg
     1141 accagcttat agaagcgcgc gggaaccttc gccaattccg cgaatgcggt ttgtaggtcc
     1201 gctaaagttg acgcttcacc accccacgag acaatccgtt gctccaccgg aatccggctc
     1261 aacaacgttt cgttcaggcc gtcttcaacg tccaactcgt aaagcacgct tcccgagaag
     1321 tgtcgtccaa cccactcggg atctacggcg ccgggtcgta gtgcgacaaa ctcaacagtt
     1381 gacggcagcg cagacaattc ccgtccgtcc ggcgaaggcg gcgtggataa ataagcgata
     1441 agtgaggcac gagtcatcac aataagccgg gtaccaattg gaacttggat ttgaactagc
     1501 ggctggattt agcgagctcg gcgaagtact tctcgtgaga attcagccgt agatttaaga
     1561 gcccggtaac tatacttggc ttggcgggag agttcaataa atttcacgcc cgcgtgcgac
     1621 acaaaagtca cagatttaga atttgagacg gagttcatgg gaatttctgt gccgtttgtg
     1681 cctttcggcg gcacgtcgta tagtgggacc aaataaggat acctggactc atgggagacg
     1741 cttcaatgga cacgacattt tcggtgttgc cgcccgcgcc tgactacaat ccggtcaagc
     1801 aggccatcgc gagggcagat gaactgggcg aaaagagcat cgcgacaaca ctgggttact
     1861 tttccaccat gccttcatcg acggacatca ttgccaaccc cgtcctttat cacacaccgg
     1921 ttgattgcaa cggcacgcag atcacgctcg atatcagatc gttcaccatt cgcggcatta
     1981 tccctgaagc cgacatcctg accggcaagg cgggtcccat cgatgtgatt ttcaccggac
     2041 tctttgctga tgcgcccggt tcggcggcgg gcaaagaaac gttggacagg ctcgttaacg
     2101 ataagttttt cgaggttgtc agaggcgacg gacagcttgt caatatggtc gcggcgtttg
     2161 tgaagaagta tccgcgcctg ggtccggaag tcgcgatgca acacattgcg acgctgcgta
     2221 aagcgagagt cgggcggccg gaaaacagcg gcatacacga cgagcgcgat tccggtgagt
     2281 tgttgcgcga catgatcgcg tgtcacatgg ataacgtggc cgtcggcggc gtgtcggcgt
     2341 acatgaacta tttgctgacg ggcaatgcgc agttgagcga gagcgaactg gcggcgggaa
     2401 caaacgaatt catctcggcg gaagtccagc gcggcagaaa cgcgtttcag gtttcgtaca
     2461 gtttgattct cgggcgccac gcgagcgatc acgagagttt gatcctcgag cgaatgggga
     2521 caatccagat tcatcacggc tcggcgggtt cgaacatggt cgcgcgctac atggcgacgt
     2581 tgcacacgtt gtcggtgtct gactttttca cggcgtcgca gatggcgttg gacggcgcgc
     2641 gtcacttcgg cgcgattcac gacatgtctg actttgttca ggagctcgag ccgttgaccg
     2701 gtgaagagcg tgcgaagcgc atccgtgaaa aagtgttgac tggtggcttg ccgacgtttg
     2761 gtcatccgga gatttctgcg gctggccgcg gtaatcaggt gcaacaggat ccgcgtccgg
     2821 cgatctatat cgcgcccgtg ttcgatgcga tcgatgcagg cgagttgacg ttgacgaagg
     2881 cgcagcagga caggctctcg atcgcgcgtc ttatttatca gaccgcgttt gtgaacggcg
     2941 tgttgaaacc gcaaagagag cacgaagcgc cgttgcggct cacggcgaac acggattttg
     3001 gagcgtggtg cgtgcaggaa gcgctgggga ttgaagaagc ggatcggacg ttgttgacct
     3061 acatcttccg tggctttggc tggatgatgg acgcgcgcga gcagttacaa cagaaaatga
     3121 ttcgcccggt gatcgcgccg aacccgaaga tcgttccgaa gtcgagtgac gaccccacga
     3181 ttccggatct cgtcgcgcgg gttcacagcc gcctgagttc cgacggcaac cccttcagcc
     3241 cacagggaga gcggtagtat gaaagtacca ccgacgaagt cggtgggatt ctgagacgtg
     3301 gcc
//
LOCUS       DASWTX010001117         2042 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_208721, whole genome shotgun sequence.
ACCESSION   DASWTX010001117 DASWTX010000000
VERSION     DASWTX010001117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2042
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208721"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(398..799)
                     /locus_tag="VGD38_17005"
     CDS             complement(398..799)
                     /locus_tag="VGD38_17005"
                     /inference="COORDINATES: protein motif:HMM:NF022963.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3224 domain-containing protein"
                     /protein_id="HEY0729785.1"
                     /translation="MSERASGTFDVKMALKDMGADAPVGGMTLDKQFHGDLAGTSKGE
                     MLMASSGSVKDSAGYVAIEKVTGTLHGRSGSFYLQHSGTMTRGAGELTITVIPDTGTD
                     QLLGLTGRMNIIIAPGGEHSYEFDYTLPDAA"
     gene            complement(796..1692)
                     /locus_tag="VGD38_17010"
     CDS             complement(796..1692)
                     /locus_tag="VGD38_17010"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY0729786.1"
                     /translation="MPSLQSKAILVLLHLIRSKRTVNRMRQRVANNERTYTEPSRRLH
                     RKHSITKRSVNGHLVWTIAPRENASGKQIIYFHGGAYVNSFASQHWAFMSKLVDALRC
                     TLTAPNYPHAPEYCAHDVFEFLLPLYLELVRESGAVNVTLMGDSSGGGISLALAQRLR
                     EDGLPQPGNVVLLSPWLDVGLSNPEIPALDRIDPFLGVDGLKYAGAAYARDVDLKNYL
                     VSPVYGSFKNLAPVTVFIGTRDILFPDCRKLRERAAAEGVTIDYHEYDQMVHDWMLGP
                     MPEAKQVFREIVELMEVRKERI"
     gene            complement(1701..>2042)
                     /locus_tag="VGD38_17015"
     CDS             complement(1701..>2042)
                     /locus_tag="VGD38_17015"
                     /inference="COORDINATES: protein motif:HMM:NF025024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HEY0729787.1"
                     /translation="HFSGALSECEDPQFLHYREGDFFVAHQDGNTGMTRLDTERRLVS
                     TVIFLSREADAPQPGAHCGGSLVFSDYRTHSKFHMVGEPGMLVAFRAETTHEITPVTH
                     GERYSIVSWYR"
BASE COUNT          463 a          652 c          516 g          411 t
ORIGIN      
        1 acgccgcggc cccgagcact ccgcttgcga ctgactgcag cacgcgcgtc ggcgtcacgc
       61 ccgcacgaaa ccacgcgctg aggcacgccg caacaatatc aagcgtgccc gcaatcaacc
      121 caccccagaa gatggcttta aaaggattgt tcatgtgtct gacgccttgt ggcgtttgtg
      181 gtgaacacgc actcaccact tggagaaacc gttgaaacgg ttctcaacta aggttctaag
      241 caccgggctg aagcccggtg tgaatgagac aaacacgaaa ctgaatggct cgctggaact
      301 tatgatccgc gctggaactt gtgagtcccg ctggaactat gagccctgcc tggaactgat
      361 gcgcaccgct gaactgagcc ccgctagaac tttttgatca cgccgcgtcc gggagggtgt
      421 agtcgaactc gtaggagtgc tcgccgcccg gggcgatgat gatgttcatg cgcccggtta
      481 ggccgagcag ttggtcggtg ccggtgtcgg gaatgactgt gatcgtgagc tcgccggcgc
      541 cgcgggtcat cgttccgctg tgttgaagat agaaactccc gctgcgtccg tgcaaggttc
      601 cggtcacttt ttcgatcgcg acgtaaccag ccgagtcttt cacactgccg ctactcgcca
      661 tcaacatctc tcccttgctc gtgcccgcca ggtcgccgtg gaactgtttg tcgagcgtca
      721 tcccgccaac cggcgcatcg gcgcccatgt ctttcagcgc catctttacg tcaaaggtcc
      781 cacttgctcg ctcgctcata ttcgttcctt tcttacctcc atcagctcga ctatctcgcg
      841 aaacacctgc ttcgcctccg gcatcggccc caacatccaa tcatggacca tctgatcgta
      901 ctcatgataa tcgatcgtca cgccttccgc cgccgcacgc tcgcgcagct ttcggcaatc
      961 cggaaacagt atgtcacgcg tgccgataaa cacagtcacc ggcgccaggt tcttgaaact
     1021 cccatacacc ggactcacca agtaattctt cagatccaca tcacgcgcgt acgccgcacc
     1081 cgcatacttc aacccgtcaa cacccagaaa cggatcgatc ctgtcgagcg ccggaatctc
     1141 cggattcgaa agtccaacgt cgagccacgg cgaaagcaac acgacattcc ccggctgcgg
     1201 caaaccatct tcacgtaaac gctgcgccaa cgccagacta atcccaccac cagacgaatc
     1261 acccatcaac gtgacgttca ccgcgcccga ttcacgaaca agctccaaat acagcggcaa
     1321 caaaaactca aacacatcat gcgcgcaata ctcaggcgcg tgcggataat tcggcgcagt
     1381 caacgtgcag cgaagcgcgt caacaagctt cgacataaac gcccagtgct gcgatgcaaa
     1441 actgttaacg tacgcgccac cgtgaaagta aatgatctgc ttgccgctcg cgttctctct
     1501 cggcgcgatg gtccaaacga gatgaccgtt cacgctgcgt ttggtgatgc tgtgtttacg
     1561 gtgcaaacgc cgcgatggtt cagtgtatgt gcgttcgttg ttcgcgacgc gctggcgcat
     1621 ccggttcacc gttcgcttcg agcgtatgag gtgaagcaga acgaggatag ccttgctttg
     1681 cagactcggc atccgcggcg ctacctgtac caggaaacga ttgaataacg ttcgccgtgc
     1741 gtcaccggtg tgatctcgtg cgtggtctcg gcacgaaacg cgacgagcat ccctggctca
     1801 ccaaccatgt gaaacttcga atgagtacga taatcactga acactaacga accgccacaa
     1861 tgcgcacccg gctgcggcgc gtcagcttcg cgactcagaa agatcacggt cgaaacaagc
     1921 cggcgctcag tgtcgagccg cgtcataccc gtgttgccat cctgatgcgc gacgaaaaaa
     1981 tcaccttcgc ggtaatgcaa aaactgcggg tcttcacact cactcaacgc accactgaaa
     2041 tg
//
LOCUS       DASWTX010001118         2141 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_37872, whole genome shotgun sequence.
ACCESSION   DASWTX010001118 DASWTX010000000
VERSION     DASWTX010001118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37872"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..446
                     /gene="ccsA"
                     /locus_tag="VGD38_17020"
     CDS             <1..446
                     /gene="ccsA"
                     /locus_tag="VGD38_17020"
                     /inference="COORDINATES: protein motif:HMM:NF013725.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HEY0729788.1"
                     /translation="RLFPIHTTLVIFAYAAFFIVFMASVMYLLQERELKLKTFSAIFY
                     RLPPLSTTNEIATNAAVVGLTLLTLGIATGMFWSWDRYGRLWHNDPKEIFAVLTWLVY
                     FVLIVYRWSASWRGRRAAWLGVVGFALVLCTLFGTRYLGGYHVFG"
     gene            450..1718
                     /gene="hemA"
                     /locus_tag="VGD38_17025"
     CDS             450..1718
                     /gene="hemA"
                     /locus_tag="VGD38_17025"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: protein motif:HMM:TIGR01035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEY0729789.1"
                     /translation="MSIILVGVNHKTAPVEIRERLAFNDEACADGLRRLVDGEVVREG
                     LIVSTCNRVEILSATTPEQMDSSAGRLAQFLDTAGELPAGFLNSYLYRHTDEEAVRHL
                     FRVASSLDSMVVGEPQVLGQVRRAYSVAVEAGTAGRVLNRLVHHTFRVAKRVRNETGI
                     AANAVSISYMAVELGKKIFDSLKGCTVLLLGAGEMAELSARHLVNAGASRVVIVNRTE
                     ETARQMADEFGASTMPFELLDQALAEADVVICSTGAPSYVLTETQARRALARKRNRPT
                     CMIDISVPRNIDPAVGKVPNVFLFDIDDLESVITSNIREREREAERAELIVQSEVMQF
                     QQSLRLMDIGPTIGAMREKFQEVARAEMARQRKRLGVLTPEQETAIEALLLSTVNKIS
                     HPILNQMRRFYESTEPDAVPGEKDIFKLEE"
     gene            1726..>2141
                     /locus_tag="VGD38_17030"
     CDS             1726..>2141
                     /locus_tag="VGD38_17030"
                     /inference="COORDINATES: protein motif:HMM:NF013538.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729790.1"
                     /translation="MSPRLVIGSRGSRLALWQAEQAKARLLALNPAFEIQIDVIRTTG
                     DVKPDPLSVIGGKGVFTKELEEALLDKRIDIAVHSLKDLPTIIPERLSISAICEREDP
                     RDALVLRGGSAAGSLRDLPAGSVVGTSSQRRLSQLKA"
BASE COUNT          416 a          590 c          660 g          475 t
ORIGIN      
        1 cacgcctctt cccgattcac accacgctcg tgatctttgc gtacgccgca ttcttcatcg
       61 tcttcatggc cagcgtgatg tacctgcttc aggaacgtga actgaagctc aaaaccttta
      121 gcgccatctt ttatcgtctg ccgccgcttt cgaccacgaa cgaaatcgcc acgaacgctg
      181 ccgtggtcgg actgacattg ctgacgctcg gcatcgcgac ggggatgttc tggtcgtggg
      241 atcgttacgg gcgcctgtgg cacaacgatc cgaaagagat cttcgcggtg ctgacgtggc
      301 tggtctattt cgtgctcatc gtttaccgct ggagcgcgag ttggcgcggg cgccgggcgg
      361 cgtggctggg cgttgttggt tttgccctgg tcctttgcac cctgtttggt acgcgttatc
      421 taggtgggta tcacgtgttt ggttgattta tgtcgatcat ccttgtcgga gtaaatcaca
      481 agacggctcc ggttgagatt cgggagcggc tcgctttcaa cgacgaagcg tgcgcggatg
      541 gactgcgccg cctcgtcgac ggcgaagtcg tgcgcgaagg attgatcgtt tcgacgtgta
      601 accgggtgga gattctcagc gctaccacac cggaacagat ggacagcagc gccggacgtc
      661 tggcgcagtt tctcgacacc gcaggcgaac tgccggccgg ttttctcaac agttatctct
      721 atcgacatac agacgaggag gcggtgcggc acctgttccg cgtggcgtcg tcgctggatt
      781 cgatggtcgt gggcgagcca caggtgctgg gccaggtgcg gcgcgcgtat tcagttgcag
      841 tcgaagccgg aactgccgga cgcgttctga accgtctcgt tcaccacacg tttcgcgtcg
      901 cgaagcgagt cagaaacgag accgggatcg cggcaaatgc cgtttcgatc agttacatgg
      961 cggttgagct cggcaagaag atttttgatt cgttgaaggg ttgcacagtg ttgctgctcg
     1021 gcgccggcga gatggccgag ctttcggcgc ggcatttggt gaatgcgggc gcttcgcgcg
     1081 tggtgattgt gaatcgcact gaagagacgg cgcgtcagat ggctgacgag tttggcgcgt
     1141 cgaccatgcc gtttgagcta ttggaccagg cgttggctga agccgacgtt gtgatctgtt
     1201 cgacgggtgc gccgtcgtac gtgttgactg agacgcaagc gcgacgcgcg ttggcacgaa
     1261 agcgcaatcg accgacgtgt atgatcgaca tcagcgtgcc gcgcaacatc gacccggctg
     1321 tcggcaaggt tccgaacgtc ttcctgttcg acatcgacga tctcgaatca gttatcactt
     1381 caaacattcg cgaacgcgaa cgcgaagccg aacgagcgga gttgatcgtg caatcggaag
     1441 tgatgcagtt tcagcagtcg ttgcggctga tggacattgg tccaacgatc ggtgcgatgc
     1501 gcgagaaatt tcaggaagtg gcgcgcgcgg agatggcgcg ccagcgtaaa cgtcttggcg
     1561 tgttgacgcc agaacaggag accgcgatcg aggcgttgct gctgtcgacc gtgaacaaga
     1621 tctcacatcc cattctcaac cagatgcgtc gcttctacga gagcaccgaa cccgacgcgg
     1681 ttccgggcga aaaggacatc ttcaaactcg aggagtaatg cgcttatgtc tcctcgtctc
     1741 gtaatcggct cgcgcggctc ccgtctcgcc ctctggcaag ccgagcaggc aaaagctcgc
     1801 ttgcttgctt tgaatcctgc tttcgagatc cagattgacg tgatcaggac cacgggcgac
     1861 gtaaagccag atcccttatc ggtcatcggc ggcaagggcg tcttcaccaa agagctggaa
     1921 gaagcgcttc tcgacaaacg aatcgacatc gcagttcact cgctcaagga tcttccgaca
     1981 atcatccccg aacgactctc gatcagtgcc atttgcgaac gcgaagatcc acgcgacgcg
     2041 cttgtgcttc gaggaggttc cgcggctggg tcgcttcgtg acttgcccgc tggatctgtg
     2101 gttggcacgt cgagtcaaag acgcctgtcg caactgaaag c
//
LOCUS       DASWTX010001119         4806 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_300125, whole genome shotgun sequence.
ACCESSION   DASWTX010001119 DASWTX010000000
VERSION     DASWTX010001119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4806
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300125"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1632
                     /locus_tag="VGD38_17035"
     CDS             <1..1632
                     /locus_tag="VGD38_17035"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY0729791.1"
                     /translation="RLGAMAVEETGYGVPDDKREKNRFAAEDVWNYFRGLRTKGVVSE
                     SKDVVEIASPRGVVAGIIPSTNPTSTAIFKILISIKSRNTVVLSPHPSAAKCINETAR
                     VMREAGVKEGLPADAIGCMTTATIEGTETLMKHKQTAVILATGGIGLVRAAYSSGKPA
                     FGVGPGNVPVCIERSADVPKAVQDILTGKCFDNGTICASEQAVICDAPIEQAVREQFR
                     LQGAHFLSAAEADQLGKIVATPQRSLNPAIVGKSVEVIAKMAGLNVPPGTRCLIADVA
                     GVGRDYPLSMEKLSPILAFYVADGLAAAAKRSQEVLGYGGMGHTAGIHTRSREAAVQF
                     GAEMPASRITVNTPTTHGAIGFSTALPPSMTLGCGSWGGNVTSDNVSPLHLMDIKRVA
                     FETRPVKSARPAVGVQPAVSAPQAQPASAPVVAGGKIDRQEIAAIVDRFLAGKRVEAP
                     AAASPLPKPEIEAEAGSMYAAPAAPAPKVVEPVSKPAAQAPSTNGNKTAVEFVSEDDV
                     KRAIQRGDKIYINAKTIITPAARDIGEPAEIFAKI"
     gene            1641..1970
                     /locus_tag="VGD38_17040"
     CDS             1641..1970
                     /locus_tag="VGD38_17040"
                     /inference="COORDINATES: protein motif:HMM:NF015289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EutN/CcmL family microcompartment protein"
                     /protein_id="HEY0729792.1"
                     /translation="MFLAKVVGTVWSTKKTPDLEGVRFLIVHPYDLDKEPTRNIVVVA
                     DRLGAGTGEMVMCAYGKAARTAIGNQDMSIEAAVVGIVDRVDINETFSDEMREAANRL
                     AQENGRP"
     gene            1994..2437
                     /locus_tag="VGD38_17045"
     CDS             1994..2437
                     /locus_tag="VGD38_17045"
                     /inference="COORDINATES: protein motif:HMM:NF001220.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HEY0729793.1"
                     /translation="MANEDLIYRITRAVYERLGPSADEQMVEQLVTDIYREVKQSVTD
                     SGRSETSASPSGSSERMIISVFGMDHPGIVAGVSQILAEAGCSIIDINQTVVQGKFAM
                     VIIGDTSRARESTTELKERLRRAGEQLGVRIYAQREDLFNAMHRV"
     gene            2599..2748
                     /locus_tag="VGD38_17050"
     CDS             2599..2748
                     /locus_tag="VGD38_17050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729794.1"
                     /translation="MRERVEKIKHVSAVMIDQAAYDPSLRFLLVVIVLFVLFLILLIL
                     SKVIG"
     gene            2753..4114
                     /locus_tag="VGD38_17055"
     CDS             2753..4114
                     /locus_tag="VGD38_17055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009256459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PFL family protein"
                     /protein_id="HEY0729795.1"
                     /translation="MEYTQAEILQTVAMTEMEHLDVRTVTLGLSLLDCSSDSISTIAQ
                     KAGEKIRRVAERLVPTVDEIGNEFGIRVANKRISITPVSLLTEGAKGNPVELARAIDD
                     AAGAVGVDFIGGYSALVQKGTTRSEKLFLDSIPEALSSTARLCSSVNAATTRAGINMD
                     VVAHVGRILKDAAERTRDQGGLACAKFVCFANAVEDNPFMAGAFHGVTEAEAVINVGV
                     SGPGVVHHAVRHADKSLPLQDLAETIKKLSFKLARAGELVGREAARRLGIPFGIIDLS
                     LAPTPVLGDSVANIIEAMGFERAGTHGTTAALALLTDAVKKGGAMASGSVGGMSGAFI
                     PVSEDAGMIEAAQLGALSLEKLEAWTSVCSVGIDMVAVPGATSAETIAAIIADEMAIG
                     VMNNKTTAVRIIPVPGRDVGDMVEYGGLLGSAPIMPVSAFSCAEFIRRGGHIPAPIHS
                     LRN"
     gene            4151..4477
                     /locus_tag="VGD38_17060"
     CDS             4151..4477
                     /locus_tag="VGD38_17060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001183618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031469 - bacterial microcompartment
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
                     /protein_id="HEY0729796.1"
                     /translation="MPEALGMVECRGLVAMIEAADAMVKAANVRLVGWEKIDAGLVTA
                     IVRGDVAAVRAAVDAGAAAGRRVGEVVATHVIPQPHSDVDQGLPVLHTGETTRKKISG
                     SVRPKS"
     gene            4517..>4806
                     /locus_tag="VGD38_17065"
     CDS             4517..>4806
                     /locus_tag="VGD38_17065"
                     /inference="COORDINATES: protein motif:HMM:NF016045.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low affinity iron permease family protein"
                     /protein_id="HEY0729797.1"
                     /translation="MVRNKESKFGRQLERFSHGVTKATGSSLAFIIAVAVILVWLISG
                     PFFGFSDTWQLVINTGTTIVTFLMVFLIQNAQNRDASAMQAKLDELLRAVGKA"
BASE COUNT          967 a         1309 c         1558 g          972 t
ORIGIN      
        1 cggctcggcg cgatggcggt cgaagaaacc gggtacggag ttcctgacga caagcgcgag
       61 aagaaccgtt ttgccgctga agatgtttgg aactactttc gcggactgcg caccaaggga
      121 gttgtttcgg agtcgaaaga cgttgtagag atcgcaagtc ctcgtggtgt ggtcgcaggc
      181 atcattcctt cgacgaatcc aacctcaact gcaattttta aaatcctgat ctcgatcaag
      241 tcgcgcaata cggtcgtgct gtcgccgcat ccgtcggctg cgaagtgcat caacgaaacc
      301 gcgcgcgtga tgcgcgaggc gggtgtgaag gaaggtctgc ccgcggacgc gatcggttgc
      361 atgacgacgg cgacgatcga aggcaccgag actttgatga agcacaagca gacggccgtg
      421 attttggcga cgggtggtat cgggcttgtg cgtgctgctt attcgtcggg caagccggcg
      481 tttggtgttg gtccgggcaa tgttccggtt tgtatcgaac gcagcgccga cgtgccgaaa
      541 gcagtgcagg acattttgac gggtaagtgt tttgacaacg gtacgatctg cgcgtctgag
      601 caggcggtga tttgcgacgc gccgatcgag caggcggtgc gcgaacagtt cagacttcag
      661 ggcgcgcatt ttctttccgc tgcggaagcg gatcaactcg gcaagatcgt ggcgacgccg
      721 cagcgttcgt tgaatccggc gattgtcggt aagtcagtgg aagtgattgc gaagatggcg
      781 gggttgaacg tgccgccggg aacgcgttgt ttgattgctg atgttgcggg tgttggacgc
      841 gactatccgt tgtcgatgga aaagctgtcg ccgattctgg cgttttatgt agctgacgga
      901 ctcgcggcgg ccgcgaagcg cagtcaggaa gtgctcgggt atggcggcat gggccacacg
      961 gcgggaattc acacgcgctc gcgcgaggcc gcggtgcagt ttggcgccga gatgcctgcg
     1021 tcgcgtatca ccgttaacac gccgacgacg cacggcgcga tcggattttc gacggcgttg
     1081 ccgccgtcga tgacgttggg ttgtggttcg tggggtggca acgtcacgtc ggacaatgtg
     1141 tcgccgttgc atttgatgga catcaagcgt gttgcttttg agacgcggcc ggtgaagagc
     1201 gcgcgtccgg cggttggcgt gcaaccggcg gtgagtgcgc cgcaagcgca gccggcctcg
     1261 gcgccggttg ttgctggtgg caagatcgat cggcaggaga tcgcggcgat cgtggatcgc
     1321 tttctggcgg gcaaacgggt tgaagcgccg gcagcggcgt cgcctttgcc gaaaccggag
     1381 atcgaagcgg aagccggcag catgtacgcg gcgccggcgg cgcccgcgcc gaaagttgtt
     1441 gagccggtga gtaagccggc ggcacaagcg ccgtcgacga atggcaacaa gacggcggtt
     1501 gagtttgtca gcgaagacga cgtgaagcgg gcgatccagc gaggggataa gatctacatc
     1561 aacgcgaaga cgatcattac acccgcggct cgcgatattg gtgagcctgc ggagattttt
     1621 gcaaagattt aaaacctaga atgtttctgg cgaaggtagt aggcactgtc tggtccacca
     1681 agaagacgcc cgatctcgag ggcgtccggt tcctcatcgt ccatccttac gatctcgaca
     1741 aagaaccaac gcgaaacatc gtcgtagttg ccgatcgact cggcgccgga accggtgaga
     1801 tggtgatgtg tgcctacggc aaagccgcgc gaacggcgat cggaaatcag gacatgtcga
     1861 tcgaggctgc cgtggtcggc attgtcgatc gcgtggacat caacgaaacg ttctcagacg
     1921 agatgcgcga agctgcaaac cggctcgcgc aggaaaacgg cagaccctga ctacccaccg
     1981 cttataatct ccgatggcca atgaagattt gatctatcgc atcactcgcg cggtttatga
     2041 gcgtttaggc ccgagtgcgg acgaacagat ggtggaacag ttggtcaccg atatctatcg
     2101 tgaagtgaaa cagtcggtca ctgactcagg acgctctgaa acgagcgcgt cgccgtcggg
     2161 ttcgtcggag cgtatgatca tctcggtctt cggcatggac cacccgggta tcgtcgccgg
     2221 tgtttcgcag atcctcgccg aagccggttg cagtattatc gacatcaacc agacggtggt
     2281 gcagggaaag tttgcgatgg tcatcatcgg cgacacctct cgcgcgcgcg aaagcaccac
     2341 cgaactgaag gagcggctcc ggcgcgccgg agaacagttg ggcgtgcgca tctacgcgca
     2401 gcgcgaagac cttttcaacg cgatgcatag agtgtgagaa ctcccgaacc gtccattact
     2461 gaaccggaaa tcgcccgccg ttgcccccac tgtggtgtct cgcttcgcca gcaggcgctc
     2521 ttttgtccgc agtgcgggga agaaattctt caaaattctt ctaccccaat tcctcagaaa
     2581 acaggcgtcg ccgaaaacgt gcgcgaacgc gtcgaaaaga tcaaacacgt ctcggctgtc
     2641 atgatcgatc aggccgcgta cgacccgagt ctgcgctttc tcctcgtcgt cattgttttg
     2701 tttgtgctgt ttctcatcct gctgattctc agcaaagtga tcggctaaac ggatggaata
     2761 cactcaagcc gaaatcctgc aaaccgtcgc catgaccgag atggaacatc tcgacgtgcg
     2821 cacggtcacg ctcggtctca gcctgctcga ttgcagcagc gattccatca gcacgatcgc
     2881 gcaaaaagcc ggcgagaaga ttcgccgcgt ggcggagcgg ctcgtgccga cggttgatga
     2941 gatcggcaac gagtttggta ttcgcgtcgc caacaaacgc atttcgatca cgcctgtttc
     3001 actgctcacc gaaggcgcga aaggaaatcc ggtcgagctc gcccgcgcga tcgacgacgc
     3061 tgccggtgct gtcggcgtcg acttcatcgg cggctactcg gcgctggtcc agaagggcac
     3121 aacgcgatcg gagaaactgt ttctcgattc gattccggaa gcgctgtcga gcacggcgcg
     3181 tttgtgttcg tcggtcaacg cagcgacgac gcgcgcgggc atcaacatgg acgtcgtggc
     3241 tcatgtcgga cggattctca aggacgccgc cgaacgcacg cgcgatcagg gcgggcttgc
     3301 gtgcgcgaag tttgtctgtt ttgcgaatgc ggtggaagac aacccgttta tggcgggcgc
     3361 gtttcatggc gtgactgaag cggaagcggt gatcaatgtc ggcgtttccg gtccgggcgt
     3421 ggtccatcac gccgtgcgac acgcagacaa gtcgttgccg ttgcaggacc tcgcggaaac
     3481 gatcaagaaa ctttcgttta agctcgcgcg cgcgggcgaa ctcgtcgggc gtgaagccgc
     3541 gcgccggctt gggattccgt ttggcatcat cgacctttcg ctggcgccga cgcccgtgct
     3601 gggtgactcg gtcgcgaaca tcatcgaagc gatggggttc gaacgcgccg gcacgcatgg
     3661 aacgaccgcg gcgctcgcgt tgctgaccga tgcggtgaaa aaaggcggcg cgatggcgag
     3721 tggatctgtt ggcggaatga gtggcgcgtt tattccggtt tcggaagacg ccgggatgat
     3781 cgaggcggcg caactcgggg cgttgtcgct ggagaaactc gaggcctgga ccagtgtttg
     3841 ttccgtcggg attgacatgg tcgcggtgcc cggtgcgact tccgccgaga cgatcgcggc
     3901 gatcattgcc gacgagatgg cgatcggagt gatgaacaac aagaccactg ccgtgcgcat
     3961 cattccggtg cccgggcgcg acgttggcga catggttgag tatggcgggt tgttgggcag
     4021 cgcgccgatc atgccagtga gcgcgttttc gtgcgcggag tttattcgcc gtggcggtca
     4081 catccccgcg ccgatccact cgctacgaaa ttagaccagg atccgtgtta atctttggta
     4141 ggagactgcg atgcctgaag cactcggaat ggttgaatgt cgcggactgg tcgcgatgat
     4201 cgaagccgcg gacgcgatgg tcaaagctgc gaacgttcgt ctcgtcggct gggaaaagat
     4261 cgacgcagga ctcgtgaccg cgatcgtgcg cggcgacgtt gcagccgttc gcgcggccgt
     4321 cgatgcaggc gccgctgcgg gcagaagagt cggcgaagtc gtggctacgc acgtcatccc
     4381 tcaaccccat tcagacgtgg accagggcct ccccgttttg cacactggcg aaaccacgcg
     4441 caagaagatc agcggctccg tcagacccaa atcctgaagc cccctccttt tccacgaatc
     4501 cttttgggga ggatcgatgg tccgaaacaa agagagtaag ttcggcagac aactcgagag
     4561 gttttcacac ggagtcacaa aagcgaccgg aagttcgctg gccttcatca tcgccgtggc
     4621 cgtgatcctg gtctggttga tcagtggacc attctttggt ttttccgaca cgtggcaact
     4681 cgtcatcaat accggaacga cgatcgtcac gttcctgatg gtgtttctca tccagaatgc
     4741 tcagaaccgc gacgcctcgg cgatgcaggc gaagctcgac gagcttcttc gagcggtcgg
     4801 gaaggc
//
LOCUS       DASWTX010001120         2446 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_106593, whole genome shotgun sequence.
ACCESSION   DASWTX010001120 DASWTX010000000
VERSION     DASWTX010001120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2446
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106593"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..638)
                     /locus_tag="VGD38_17070"
     CDS             complement(<1..638)
                     /locus_tag="VGD38_17070"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside phosphotransferase family
                     protein"
                     /protein_id="HEY0729798.1"
                     /translation="MDEKNDQPGMIRHYRGLAKRIVQHHFGSPASRIVYKSSGRTNYV
                     FAVNHVDGQFVVRISPEAEKINAFRKELWTSHKVREVGVPSPEVIAVGNDIAAEPYMI
                     TRRVTGTEASHHPKRDRIIHAMGRNAAMINSIQTSGFGSNFDWTTDETRIDSWRGYLA
                     KEFELEKRLQLFSSNDILPDAELDQLSQIIQGTNPDGIKPSLNHTDMRLKNV"
     gene            complement(631..1554)
                     /locus_tag="VGD38_17075"
     CDS             complement(631..1554)
                     /locus_tag="VGD38_17075"
                     /inference="COORDINATES: protein motif:HMM:NF019887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD hydrolase family protein"
                     /protein_id="HEY0729799.1"
                     /translation="MVLNAEIDAKLQHFIDQSSFVTSGVVITDLDGTAVHEFQGKIAI
                     PKEVELGLMRHYERGRPLILNSLRFPLSVIRTFGQDWYRLSNAPIPTVTLNGSLMGFV
                     KKNEDGELVFEEALAFPLTNEEIVEALKGVKGMLDGGIKNILVFYYPRDWRIGEVIWT
                     PVAENVQAVKEKYASASAVTAVEFPKLQDQMLAEEICMIFLLIDAPEDQLMAYQHTKR
                     SNFITHKGVDKLFGAQAMAKFLQSDLRDSLGAGDTELDSFLSGVGLACLVGNQELTFR
                     GLVDTIKLRDSMELGAVLFRAAELAAGRTHG"
     gene            1627..>2446
                     /locus_tag="VGD38_17080"
     CDS             1627..>2446
                     /locus_tag="VGD38_17080"
                     /inference="COORDINATES: protein motif:HMM:NF014587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729800.1"
                     /translation="MKLAAIDIGSNSIKLAVADAADSSSFAVVTRQKEVIRLGHETLR
                     TGRLSRSAIERAISCLQRFKTIAEAHQPKQIVAVATASVREANNASQFIKEVEQQTGL
                     RVEILSGIEEARLIGLAASHGCTLNGATNINVDVGGGSTEISLFRNGTPISLFSMKLG
                     AVGLTERYLSSDPPKPKQLSSLKAEVHAAFERPHRELRQAQWQQASGTSGTILSIGAA
                     LRQIASPNGKNQSVQPTETDIPLSQLTALNAKLATMNLAERRALAGLTSQRSEII"
BASE COUNT          558 a          736 c          634 g          518 t
ORIGIN      
        1 atcacgttct tcagacgcat gtcagtgtga ttcagcgacg gtttgatacc gtcggggttt
       61 gtgccctgaa ttatctgcga gagctggtcc aactcggcgt cgggaagaat gtcgttactg
      121 gaaaacagtt gcagacgctt ctcgagctca aattctttgg caaggtaacc gcgccagcta
      181 tcgatccggg tttcatctgt ggtccagtcg aagttcgaac cgaagccact cgtctgaatt
      241 gagttgatca tggctgcgtt tcggcccatc gcgtgaatga tgcgatcgcg tttgggatga
      301 tgcgacgcct cggtcccggt cacgcgccga gtgatcatgt acggctcggc agcaatgtcg
      361 ttgccaacag cgataacttc gggactcggc acgcccacct cacgaacctt gtgcgaagtc
      421 cagagctctt tcctgaaagc gttgatcttc tcggcttcag ggctgatgcg aacgacgaac
      481 tgcccgtcaa catgattgac ggcaaaaacg tagttggtcc gtcccgagga tttgtaaaca
      541 atcctgctcg cgggcgatcc gaagtggtgc tgcacaattc tcttcgccag gcctcgataa
      601 tgacgaatca tccccggctg atcgtttttt tcatccatgt gttctaccgg ccgcgagttc
      661 cgcagccctg aacagcactg cgccaagctc catcgaatcc ctcaatttaa tcgtatcaac
      721 caagccgcga aacgtgagct cctgattccc gaccagacac gccaggccca ctccagaaag
      781 aaaactgtcg agctcggtat cgcccgcgcc gagactgtct cgcagatcgc tttgcaaaaa
      841 cttcgccatc gcctgtgcgc caaaaagctt gtccacgcct ttgtgcgtga tgaagttgct
      901 ccgcttcgtg tgctgatagg ccatcaactg atcttccggc gcgtcgatca acagaaagat
      961 catgcagatc tcttcagcca acatctggtc ctgtagcttc ggaaactcaa ccgccgtcac
     1021 cgccgaagcg ctcgcgtatt tctctttcac tgcctgaacg ttctcagcca cgggcgtcca
     1081 gatcacttcg ccgatacgcc aatcgcgcgg gtaatagaac acgagtatgt tcttgatgcc
     1141 gccgtcgagc attcccttga cacccttgag cgcctcgacg atctcctcgt tcgttagcgg
     1201 aaaagccagc gcttcttcaa acaccaactc cccgtcctcg ttcttcttca cgaagcccat
     1261 gagactgccg ttcagagtca cagtaggaat cggcgcgttc gacaaccggt accaatcctg
     1321 accaaacgtt cggatcacgg aaagagggaa gcgcagcgag ttcaaaatca gcggccgccc
     1381 gcgctcgtaa tggcgcatca gcccgagctc gacttctttc ggaatcgcga tcttcccctg
     1441 aaattcatga accgccgtgc catccaggtc ggtaatcacc acgcctgacg taacaaatga
     1501 cgattggtcg atgaagtgct gtagctttgc gtcaatctct gcatttaaaa ccatgcgggg
     1561 aatatagggg ccggagttta caaactgttc acaaactagc ttggaaaata aggtagactc
     1621 ctgccattga aactcgcggc gatagacatc ggctccaact ccatcaaatt ggcggtcgct
     1681 gacgcggctg acagcagttc gttcgcggtt gtcacgcggc aaaaagaggt gatccggctg
     1741 ggacacgaga cgctgcgcac gggccggctt tcccgttcgg caatcgagcg cgcgataagt
     1801 tgtctgcagc gattcaagac catcgccgag gcccatcaac ccaaacagat cgtcgcggtc
     1861 gccactgctt cggtgcgcga agcaaacaac gcgtcgcagt tcatcaaaga agtcgaacaa
     1921 caaacgggtc tgcgcgtcga gatactttcc ggaatcgaag aagcgcggct catcggtctc
     1981 gccgcgtcgc atggctgtac gctgaacggc gctacgaaca tcaacgtcga cgtcggcggc
     2041 ggctcaaccg agatctcgct ttttcgcaac ggcacaccga tttcgctgtt ctcgatgaag
     2101 ctcggagcag ttggtctaac agagcgttat ctcagttcgg atccaccaaa accaaaacag
     2161 ctttccagtc tcaaagccga ggtccacgcc gcgttcgaac gcccgcaccg cgagttgcgg
     2221 caagcgcaat ggcagcaggc atcgggcact tcagggacga tactctcgat cggcgcggcg
     2281 cttcggcaga ttgcttcgcc gaacggaaag aaccagtcag tgcagccgac cgaaaccgac
     2341 atcccactca gccagctcac cgccttgaac gcgaaactcg cgacgatgaa tcttgcggaa
     2401 cgccgcgcgc tggcaggact gacttcacag cgatccgaaa tcatcg
//
LOCUS       DASWTX010001121         1776 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_300191, whole genome shotgun sequence.
ACCESSION   DASWTX010001121 DASWTX010000000
VERSION     DASWTX010001121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1776
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300191"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..449
                     /locus_tag="VGD38_17085"
     CDS             <1..449
                     /locus_tag="VGD38_17085"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEY0729801.1"
                     /translation="STLWLQADKPGVYRGQCAEYCGLQHARMAFWVVADTPEQFQAWR
                     QNQTQTSVPPSTDSQRRGQQVFMSSTCVMCHAINGTTTASNIGPNLTHIGSRNTLAAA
                     TLSNTREHLARWIVDSQQFKPGNRMPQNNLGQDDLNALVDYLQSLK"
     gene            446..>1776
                     /locus_tag="VGD38_17090"
     CDS             446..>1776
                     /locus_tag="VGD38_17090"
                     /inference="COORDINATES: protein motif:HMM:NF012343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HEY0729802.1"
                     /translation="MSRGLTQKAQIETISDEELAAQMEREREELERTWAPPRGLRGWF
                     TDTDHKKIALRYIVTAFVFFVFGGIEAALMRIQLARPDSHFLNPDLYNQVFTVHGTTM
                     MFLFAVPIMTALGIYLVPLMIGSRDVAYPRLNLYGYFVYLIGGILLYTGFLLNTGPDA
                     GWFSYVPLSGPAYSPGKRVDIWAQMITFTEISALVGAVIIIGTVFKMRAPGMTLNRLP
                     LFVWAQLVTSFMIIFAMPAVMLASSLLASDRLIDTHFFNPGEGGDAILYQHLFWYFGH
                     PEVYIIFIPALGFISSIIAAFARTKIFGYPVMVLSLIATGFIGFGLWVHHMFATPIPQ
                     MGQSFFTAASMIISIPTGVQIFCWIATLWVGKLNIKTPLLFVLGFFAIFILGGLTGVM
                     LASVPLDLQIHDTFFVVAHLHYVLIGGAVFPLFGAFYYWIPKWTGRMLSERL"
BASE COUNT          321 a          531 c          509 g          415 t
ORIGIN      
        1 actcgacgct gtggttgcag gccgacaagc cgggcgtcta tcgcgggcag tgcgcggagt
       61 actgcggttt gcaacacgcg cgcatggctt tctgggtcgt cgcggacacg ccggaacagt
      121 tccaggcgtg gcgccagaac cagacgcaaa catcggttcc gccgtcgact gattcacaac
      181 gccgcggcca gcaggtgttc atgtcatcga cgtgcgtcat gtgtcacgcc atcaacggca
      241 cgacaacggc ttcaaacatt ggcccaaacc tgacgcacat cggcagccgc aacacgctcg
      301 ccgccgcgac gctgtcgaac acacgcgaac acctcgcgcg ctggatcgtc gattcgcaac
      361 agttcaaacc cggaaacagg atgccgcaga acaacctcgg ccaggacgac ctgaacgcgt
      421 tggttgatta tttgcagagt ttgaaatgag ccgcggatta acacagaaag cacagatcga
      481 aacgatcagc gatgaagagc ttgccgcgca gatggaacgc gagcgtgagg agttggaacg
      541 tacgtgggct ccgcctcgcg gcctgcgcgg ctggttcacc gacaccgatc acaagaagat
      601 cgctttgcgt tacatcgtca ccgcgtttgt gtttttcgtg ttcggcggaa tcgaagcggc
      661 gttgatgcgc attcagctcg cgcggcctga cagtcatttt ctcaatcccg atctttacaa
      721 ccaggtcttc accgtacacg gcacgacgat gatgtttctg tttgccgtgc cgatcatgac
      781 ggcgctgggc atctatctcg tgccgctgat gattggttcg cgcgacgtgg cttacccgcg
      841 gctgaatctc tacggctatt tcgtctattt gatcggcggt atcctgcttt acaccggctt
      901 cctgctgaac actggaccag acgcgggctg gttctcgtac gtgccgcttt caggcccggc
      961 atattcgccg ggaaaacgcg tcgacatctg ggcgcagatg atcacgttta ccgagatctc
     1021 ggcgctggtc ggcgccgtca tcatcatcgg tacggtcttc aagatgcgcg cgccgggcat
     1081 gacgctgaac cggttgccgc tgtttgtctg ggcgcagctc gtcacgtcct tcatgatcat
     1141 cttcgcgatg ccggccgtga tgctcgcgag cagtctgctt gccagcgatc gtctcatcga
     1201 cacgcacttc ttcaatcccg gtgagggcgg cgacgcgatt ctttatcaac acctcttctg
     1261 gtacttcggc catccggagg tctacatcat cttcataccc gcgcttgggt tcatttcatc
     1321 gatcatcgcg gccttcgccc gcaccaagat cttcggctac ccggtgatgg tcttgtcgct
     1381 gatcgcgacg ggttttatcg gctttggttt gtgggtgcac cacatgtttg ccacgccgat
     1441 accgcagatg ggccagagct tctttaccgc cgccagcatg atcatctcga tcccgacggg
     1501 cgtgcagatc ttctgctgga ttgcgacgtt gtgggttggg aagctgaaca tcaagacacc
     1561 gctgctgttc gtgcttggtt tcttcgcgat cttcattctc ggcggactga ccggcgtgat
     1621 gctcgcgtcg gtgccgctcg acttgcagat tcacgacacg ttcttcgtcg tcgcacacct
     1681 tcactacgtg ttgattgggg gcgcggtgtt tccgctcttc ggcgcgtttt actactggat
     1741 tccgaagtgg accgggcgca tgttgagcga acgtct
//
LOCUS       DASWTX010001122         2603 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_208828, whole genome shotgun sequence.
ACCESSION   DASWTX010001122 DASWTX010000000
VERSION     DASWTX010001122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2603
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208828"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1073)
                     /locus_tag="VGD38_17095"
     CDS             complement(<1..1073)
                     /locus_tag="VGD38_17095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729803.1"
                     /translation="MSKQLIVSVNGREKKIAIIEDDKVAEFYIERGEQHQGIVGNIYK
                     GRVMRVLPGMQSAFVDIGLERDAFLYVSDFFDEEEEFERIVIDKSKKGTPDAEHAAAE
                     EVALNRVEREQRIEAEQERAEPLQTEAPSVAEASESTDGGRRRGRRGRRRGRWERDEP
                     TTTAPAPEPEDEEEEFEVPDTPFVAGDPSIERIVDEEETATANGEMFKDARLQERIFD
                     QIHAVEFNMEDDFRTAEVGSLLSSGFGSDSFERIADDDEDTEVEPIRAERRPAEAHVS
                     SFVDDFDDETPSRFEFQRVSDDEEEAAPAVETTAPASKRSRKSPAPASKKRAAKGATK
                     TASKKKASSKKPSKKKAAASDESA"
     gene            complement(1537..1815)
                     /locus_tag="VGD38_17100"
     CDS             complement(1537..1815)
                     /locus_tag="VGD38_17100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729804.1"
                     /translation="MALFKREDGFFVGAILANVVTTEFAILLVCFFCLIILGLNYESV
                     LVVLFIMALTLPVAFYHHSWSLWLGFDYIVESLPKYTPFSRYEDGKER"
     gene            2131..2451
                     /locus_tag="VGD38_17105"
     CDS             2131..2451
                     /locus_tag="VGD38_17105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729805.1"
                     /translation="MKLEVCPDTVAIGNMAWDCYRRANQPEGFAMFHATDGPPDGDLN
                     SRMIIYFSPVASEVCREISEKYPFEPCKTPARDEPSIAYVFGDPRMMGQLRDSMNTDR
                     LAIS"
BASE COUNT          540 a          752 c          713 g          598 t
ORIGIN      
        1 gcgctctcat cactcgcggc agctttcttc ttcgacggct tcttgctcga cgctttcttc
       61 ttgcttgctg ttttagttgc acccttggct gcgcgctttt tcgacgccgg cgctggcgac
      121 ttgcgcgaac gcttgctggc cggagccgtt gtctcgaccg caggcgcagc ttcttcttcg
      181 tcgtcgctca cgcgctgaaa ctcgaaacgg ctgggcgtct cgtcgtcgaa gtcgtcaaca
      241 aaactcgaaa cgtgcgcttc agccggacgg cgttcggcgc gaatcggttc cacctcggtg
      301 tcctcgtcgt cgtcggcgat acgttcgaac gagtcactgc cgaaaccgct cgagagcaac
      361 gagccgactt ccgcggtgcg aaagtcgtct tccatgttga actcgactgc gtgaatctga
      421 tcgaagatgc gttcctgcag ccgcgcgtct ttgaacatct cgccgtttgc ggtggctgtt
      481 tcttcttcgt cgacgatgcg ttcgatcgac ggatcgcccg cgacgaaggg cgtgtctgga
      541 acctcgaact cctcttcctc atcctccggc tctggcgccg gcgcggtggt cgtgggctcg
      601 tcgcgttccc aacgcccccg ccgacggcca cgacgcccgc gacggcgtcc gccatcggtt
      661 gactcagatg cttcagcaac tgagggcgct tcggtctgca acggttcggc gcgttcctgc
      721 tccgcttcga tccgttgctc gcgttcgaca cggttgagcg cgacctcttc ggctgcggcg
      781 tgttcggcgt cgggcgtgcc cttcttcgac ttgtcgatga cgatgcgttc aaactcttct
      841 tcttcgtcga agaagtcaga gacgtaaagg aatgcgtcgc gttcgagacc gatgtctacg
      901 aaggctgact gcataccggg aagcacgcgc atgacgcgtc ctttgtaaat gttaccgacg
      961 atgccttgat gttgttctcc acgttcgatg tagaactctg cgaccttatc gtcttcaatg
     1021 atcgcaatct tcttctcgcg tccattgacg cttacgatta gttgttttga catttcttgc
     1081 ctttactggg aatggtaggc ctgccgcgaa attggggttg agaccagttt ccgcggggcc
     1141 gaatgcggat ggaatggaaa cggtgcgccg aaggtggcgc aactcgggtc gcgttcggat
     1201 cacaagtgtc cggaacacga cagcaaattc tttctttcaa acagaaaacc tgactagccg
     1261 ccgggcgcgc tttggccgga gatgcttgtt acagggagcg catacagcta aacgagcaac
     1321 aaatactcgg agcgcgtgct ctgacctggt taaatcaaaa tcgtctcgct gacgatcaat
     1381 aaactctaac tcgccaactc gtgcgagaaa cacctcatcg ctccgagact cttttagtct
     1441 taattggacc taagcgcctg aaaccgcggg cgggcgagct acgggagtat aacccaaaac
     1501 ctcaataatc acgcaactat gggcggcaag tatcgctcag cgctctttgc cgtcttcgta
     1561 acgcgagaac ggtgtgtact tcggcaacga ctccacaatg tagtcaaaac cgagccacaa
     1621 actccagctg tgatgataaa aagcgaccgg taaagtcagg gccatgatga agagcacgac
     1681 gaggacgctc tcgtaattca agcccagaat tatcaagcaa aagaagcaga ccagcaggat
     1741 cgcaaactct gtcgtgacga cgtttgcgag gatcgcgccc acaaaaaatc cgtcctcgcg
     1801 cttgaacaga gccatgcagg acgggcagtg atgccggatt ttgaacgggt gcgccgcgat
     1861 cttcgtctcg ccgcataccg ggcagagcag tcgtagacaa cgacctatta cccgcttgat
     1921 ctgtggccaa tcttttttca cagagagttg tgacattcta ctccgggccg gggataacaa
     1981 ccaaccgccg caacaaaaac cgccaataga actttcttga cagtgccggg tgggattggt
     2041 taacaaaggg cggacaccgt tactcaactc ccataatctg gaaaaaggat gttttcgttt
     2101 atgtcgtcgt ggaatcgaat cgttctccct gtgaaactgg aagtttgccc ggataccgtg
     2161 gcgattggga atatggcgtg ggattgttat cggcgtgcaa accagcccga aggtttcgct
     2221 atgtttcatg cgaccgacgg cccgccggac ggcgacctca attcgcggat gatcatctac
     2281 ttctcaccgg tggcgtccga ggtgtgtcgt gagatcagtg aaaagtatcc ttttgaaccc
     2341 tgcaagaccc cggcgcgcga cgaacccagc atcgcctacg tcttcggcga cccgcgcatg
     2401 atgggccaac tgcgcgactc catgaacacc gaccggctgg cgatcagcta ggcgctcgtg
     2461 gtcagctcgg aggctcgtgg tcatgtagtg ctctttcggt tcggtaatcc caccgacgca
     2521 gtcggtggtg cttcatatcc aacctacaaa attcaaaacc cgagccgtaa tcccatcgac
     2581 gcagtcggtg gtggtttcat acc
//
LOCUS       DASWTX010001123         1595 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_233695, whole genome shotgun sequence.
ACCESSION   DASWTX010001123 DASWTX010000000
VERSION     DASWTX010001123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1595
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233695"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..487
                     /locus_tag="VGD38_17110"
     CDS             <1..487
                     /locus_tag="VGD38_17110"
                     /inference="COORDINATES: protein motif:HMM:NF024934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEY0729806.1"
                     /translation="MAGAQILMGAKHSNSEALILTEGKALRLPAPVLKKEAKRSSRIR
                     EVMLNYANALLAQSAQLAACHRYHTPKARLARLLLMIDDRVTGSELRITQDLLAHLLG
                     TRRATVTQAANQLQDEGLIQSVRGRIRFLDRKGLEQASCSCYAIIVHHYLDQNHPAVH
                     L"
     gene            638..>1595
                     /locus_tag="VGD38_17115"
     CDS             638..>1595
                     /locus_tag="VGD38_17115"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY0729807.1"
                     /translation="MTRGKTKAAANGNGRHQYKTLTAASVHKNGKPKPILITGGAGFI
                     GSNLAHRLLSAGHRVRLLDNLSRSGVERNLRWLIETHGDMVDIEVPDVRNFSTLKQAV
                     KDASQVFHFAAQVAVTSSLTDPIEDFEINARGTLNLLEAIRNTDNPPPLVFTSTNKVY
                     GTLGDLQFTSGATRYAPVDCFIRERGIAETRPLDFHSPYGCSKGAADQYVIDYARTYG
                     LPTLVFRMSCIYGPHQYGNEDQGWVAHFVIRSITGKPIIIYGDGKQVRDILFIEDLVD
                     AFLLAQQYMQQLSGSAFNIGGGPANTISLLELLDLITELHGGE"
BASE COUNT          380 a          474 c          414 g          327 t
ORIGIN      
        1 aatggccggc gcgcaaatcc tcatgggcgc aaagcattcc aacagcgaag cgttgatact
       61 caccgaagga aaagctctac gtcttcccgc tcccgttttg aagaaagaag cgaaacgcag
      121 cagccgcatc cgcgaagtca tgctcaacta cgccaacgcg ctcctggcgc agagcgcaca
      181 actcgccgcg tgtcatcgtt atcacacacc aaaagcacgc ctcgctcgtt tgctattgat
      241 gattgacgat cgcgtgaccg gttcggagtt acgcatcacg caagacctgc tcgctcatct
      301 actcggaacg cgccgcgcca cagtcacaca agccgccaat caactgcaag acgaagggct
      361 cattcaatcg gtccgtggcc gcatacggtt ccttgatcgc aaaggactcg agcaagcctc
      421 gtgtagctgc tacgccatca tcgtccacca ttacctagat cagaatcatc cagcagtgca
      481 cctgtaactc ctaacaaatt gttcacggta ctgacacttc tggagtcggg gtacgccagc
      541 gtacggaaat cacgatcaac gccatgtact tttcgtgcct ccgaggactc aatgcagtgg
      601 ctgagcaccg cgcacggctt cgtaggaagg tgacaagatg acaaggggta aaacgaaagc
      661 tgccgcaaac ggaaatggcc gccaccagta caagacatta actgccgcgt ccgttcataa
      721 aaacggaaag cccaaaccaa ttctgatcac cggcggcgcc ggctttatcg gttcaaacct
      781 cgcgcaccgg ttgttgtcag ccggacatcg cgtgcggcta ctcgacaacc tgtcgcgttc
      841 cggcgttgaa cgaaatcttc gctggctgat cgaaacgcat ggcgacatgg tcgacattga
      901 agtccctgac gttcgaaatt tctcgacact caaacaggcc gtgaaggatg cctcgcaggt
      961 ttttcatttc gcggcgcagg tggcggtaac gtcgagtctg acggatccga tcgaagactt
     1021 cgagatcaac gcaaggggaa cgttgaacct gctcgaagcg atccgcaata ccgacaatcc
     1081 accgccacta gtcttcactt cgacaaacaa ggtgtacggc actctcggcg atcttcagtt
     1141 cactagcggt gcgacgcgtt acgcgcccgt tgactgcttc attcgcgaac gggggatcgc
     1201 cgagactcgt ccactcgatt ttcacagccc gtacggctgc tccaaaggcg cggcggatca
     1261 atacgtgatc gattacgccc gcacttatgg actgccgacg ctcgtctttc gcatgagctg
     1321 tatttacggt ccacaccagt atggcaacga ggaccagggt tgggtggcgc acttcgtgat
     1381 tcgttcgatc acgggcaagc cgatcatcat ttacggcgac ggcaaacaag tgcgcgacat
     1441 cctgtttatc gaagatctcg tcgatgcgtt tctgctggcc cagcagtaca tgcaacaact
     1501 ttcggggagt gctttcaaca tcggtggtgg tccagccaac acgatcagct tgctggagtt
     1561 gctggatctg atcaccgagc ttcacggcgg cgaac
//
LOCUS       DASWTX010001124         1642 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_411423, whole genome shotgun sequence.
ACCESSION   DASWTX010001124 DASWTX010000000
VERSION     DASWTX010001124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1642
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411423"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..525
                     /locus_tag="VGD38_17120"
     CDS             <1..525
                     /locus_tag="VGD38_17120"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY0729808.1"
                     /translation="SNDPPSRTPANSPVSSAPPNTSLPMPPLNGASINNLGWTVDGGQ
                     RSVFSDYKGKVLVLDFYATWCEPCRRSIPHLVGLQNKFGDQGLQVIGLNVGGPDDLPE
                     VPAFAKEFGIQYPLAVPDDELVTFLLADNDAIPQTFIFDRQGQLAEHLVGFGPSAAGQ
                     IDSAIEAALKTPAP"
     gene            548..>1642
                     /gene="pyk"
                     /locus_tag="VGD38_17125"
     CDS             548..>1642
                     /gene="pyk"
                     /locus_tag="VGD38_17125"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: protein motif:HMM:TIGR01064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEY0729809.1"
                     /translation="MRKAKILITLGPTSREPEVVEKLIAAGANGMRMNMSHGTHEEKA
                     EDIARARAAARKLGCSIAILVDLSGPKIRTRRLKDGQPVKLNPGSLFILTTEDIPGDE
                     KRVATTFLDLPRVVQPGTRLLLDDGAIALVVESTTDTDVICRVVDGGMLGERKGINLP
                     GVALPIDSLTEKDIEDLKWAVGQNADYIALSFVRRASDCERAKQLISEAGGRAPLIAK
                     IEKAEAIDHLDEIIAASDGVMVARGDLGVETSVELVPVYQKRIIERAIQAGKMVITAT
                     QMLQSMVSSPRPTRAEASDVANAVWDGTDCLMLSNETATGSYPIAAVETMARIIESAE
                     TGREFHDERLDKSTGRQSGRVSRALSEAAAF"
BASE COUNT          353 a          457 c          505 g          327 t
ORIGIN      
        1 agcaacgatc cgccgagccg tacgccggcc aattcaccgg tttccagtgc tccgccgaac
       61 acttcgttgc cgatgccgcc cctcaatggc gcgtcgatca ataatctggg ttggaccgtg
      121 gacggtggcc agcgaagtgt cttcagcgat tacaaaggca aggtgctggt cctggacttc
      181 tatgcgacgt ggtgcgagcc gtgccgccgg agtattccgc atttggtcgg tctgcaaaat
      241 aagtttggcg atcagggact acaggtaatc gggctaaatg tcggtgggcc agacgatcta
      301 ccggaagtcc cggcattcgc gaaagagttt ggcattcaat atccgctcgc agttccggac
      361 gatgagttgg taacctttct tctggccgac aacgacgcca ttccgcaaac gttcattttc
      421 gatcgacagg gtcaactcgc cgaacacctg gttggttttg gaccaagtgc agccggtcag
      481 atcgatagcg cgatcgaagc agcattgaaa actccggctc cctgagcatc accagcaggt
      541 ttgaattttg agaaaagcaa aaatactgat tacgcttggt ccaacttccc gtgagccgga
      601 agtggttgaa aaattgatcg cggcgggcgc caacggcatg cgcatgaaca tgtcgcacgg
      661 cacgcacgag gaaaaagccg aagacatcgc acgcgcgcgc gccgcggccc ggaaactcgg
      721 gtgttcgatc gcgatccttg tcgatctctc cggtccaaag atccgcacgc ggcgtttgaa
      781 agatggccag cccgttaaac tcaatcccgg ctccctcttc atactgacaa ccgaagacat
      841 tcccggtgac gagaagcgtg tcgcgacaac gtttctcgat ctgccgcgcg tggtccaacc
      901 cggcactcgg ctgctgctcg acgacggcgc gatcgctctc gtggtcgaaa gcaccacgga
      961 taccgatgtg atctgtcgcg tggtcgatgg cggcatgctc ggggaacgaa aggggatcaa
     1021 tctgccgggc gtggcgttgc cgatcgattc gttgaccgag aaagacattg aggatctgaa
     1081 gtgggcggtt ggtcagaacg ccgattacat cgcgctttcg tttgtgcggc gtgcgagcga
     1141 ctgcgaacgc gcgaagcaac tgattagcga agccggtggg cgcgcgccgt tgattgcaaa
     1201 gattgaaaag gcggaggcaa tcgatcatct cgacgagatc atcgcggcgt ccgacggcgt
     1261 gatggtggcg cgtggcgatc tcggcgtgga aacgagcgtc gagctagtgc cggtttatca
     1321 aaaacgaatc atcgagcggg cgattcaagc gggaaagatg gtcatcactg cgacgcagat
     1381 gttgcagtcg atggtcagca gtccgcgccc gactcgcgcc gaggcttcgg acgtcgctaa
     1441 tgctgtttgg gacgggaccg attgcctgat gctttccaac gaaaccgcga ccggttcgta
     1501 tccgatcgcc gccgtcgaga cgatggctcg catcatcgag tctgccgaga ccggtcggga
     1561 atttcacgac gaacggctcg acaaatcgac cggccggcaa tcgggacgcg tcagccgcgc
     1621 gttgtcggaa gctgcggctt tc
//
LOCUS       DASWTX010001125         5183 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_186812, whole genome shotgun sequence.
ACCESSION   DASWTX010001125 DASWTX010000000
VERSION     DASWTX010001125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5183
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186812"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..821
                     /locus_tag="VGD38_17130"
     CDS             <1..821
                     /locus_tag="VGD38_17130"
                     /inference="COORDINATES: protein motif:HMM:NF023260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3352 domain-containing protein"
                     /protein_id="HEY0729810.1"
                     /translation="ANVVAGFVVKNPVSMVDDMLGVLETVSPELRTNLEKLQTEHGLD
                     LRSDIAAPLGGEFAFAIDGPILPTPSWKLVFEVNDPAHLQQTLERVVNEVNKQAAKFG
                     KTGLAWEQTEVSGRPFYKLKSPEFGLVEVNYTYANGYMIVGPSRALVERALLAHDSGS
                     SLLRSQKFVAGLPADGNANFSAIFYHNLGGLVPAGLASTAENHLPSGPQQAVKAITAD
                     MAPTLAYAYAQGDSITFAANTEGGPFGFGPATLLGMPNQLEMQHIIQRGMKNRN"
     gene            879..1238
                     /locus_tag="VGD38_17135"
     CDS             879..1238
                     /locus_tag="VGD38_17135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729811.1"
                     /translation="MKLVSISLISWSLGLLLLLSTFSVDDKTVTSLIMAALLFSLAYA
                     PSLSWLRRRMGGCRPALLFPLASAVVLNIPVFLIEILAIGRTLAPAEALACIGAFLLM
                     GTVFGLGFVWNYQDAAL"
     gene            1249..2232
                     /locus_tag="VGD38_17140"
     CDS             1249..2232
                     /locus_tag="VGD38_17140"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0729812.1"
                     /translation="MALPATVQEELIRPQTVDDPPVIDLHGLSVAFGRRQILKNLRGD
                     LRGKAIGLLGPNGAGKTTLIHTLLGFHHPNAGTAQIFGHDIVDEAKKIKSLIGYMPER
                     DAFIAKMTAVHFVRLMGELSGLPSEAALERAHEALFYVGLGEARYRKLETYSLGMKQL
                     AKLAQAIVHGPKLIFLDEPTNGLDPPARLRMIKLIREIRDSGQAHIVLSSHLLVDVEE
                     CCDEILILKDGQIAVYCNLEEERKSNRKFLMLETRGDQKRFVEALAGLGCEYAISSDS
                     RLKVVLQDGVEVRDLYRLAGETQVQLRRLSYKRDSLEDIFLKAMENGYGGL"
     gene            2219..3139
                     /locus_tag="VGD38_17145"
     CDS             2219..3139
                     /locus_tag="VGD38_17145"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY0729813.1"
                     /translation="MAVYEQTYKRYQGPLTPEWNRFLIIPRHAFRSVFSSKLFTAFFV
                     ICFLPLLVEAILIYLHHNFSAIASMNINVRELVPIDAFFFQTFISIQGGFAFFVALLV
                     GPPLVSRDLRNNALPLYLCRPFTRTEYVVGKMSVILILLSLITWVPQLLLFLFQSYLE
                     GFAWFKANAWMINAIVLGGLVWAVLLALLTQTISALVKWRVVASGILLGLFFIPTVFG
                     AFVNEVFQTRWGNIISLGALINNVTSGLFGTFNRTFDVIRVRDFGEDVVREVVLYEPP
                     LWASWTVLFLICAVCLALLSWKVKAYEVVR"
     gene            3146..4099
                     /locus_tag="VGD38_17150"
     CDS             3146..4099
                     /locus_tag="VGD38_17150"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0729814.1"
                     /translation="MSIPKDQLIVFDNVSKFYGEILGVNRVNLQIAPGITSLVGPNGA
                     GKSTLMNLMTGLLRPTRGTITLLGIPTDQPERLFRKVGYCTQFDSFPRGLTGREFLNS
                     FLLVHGFDRKRADELSQQALERVNLVEAADRKVAGYSKGMRQRIRLAQAIAHEPLVLI
                     LDEPLNGLDPMVRAETIALFRKLAAEGLHLIISSHILHEVDMMSDRVVLLNNGYIVAE
                     GNIHGVRDEMEEHPMQILIRCDQPAKLAAYVFAQNHVVEARLHDDRRGLFVKTRDADG
                     FYLLLNRAVAEGAVNVESVAPVDDDMSAVYQYLIGTSGGSA"
     gene            4112..4978
                     /locus_tag="VGD38_17155"
     CDS             4112..4978
                     /locus_tag="VGD38_17155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729815.1"
                     /translation="MSSAVDAVANNRQGPLPWALWFRQIGAIFRSDLQKNFLGRRAIL
                     IYLLALLPLFPLLVLAVFSRQLNGEWKDLNNLSLIYSVLYNGLILRTVVFFGCAWIFM
                     NLFRGEIVDRSLHYYFLSAVRREVLVVGKYFSGLVTSIVLFTFTTVVSLLLLYLPQAY
                     TQSMRYFTEGYGLKQLLTYAGITILACIGYGAFFVVVGLFVRNPIIPAVLLYGWEWLN
                     FLLPPLLKKISVIHYLNSLVPVPVSEGPFAVIAEPTPVWIAVPSMLGVTLVVLVLAAY
                     RIRHLEIHYGSD"
BASE COUNT         1013 a         1425 c         1506 g         1239 t
ORIGIN      
        1 acgcgaacgt cgtggccggg tttgtagtca agaatccggt gtcgatggtc gacgacatgc
       61 tcggcgtgct cgaaactgtt tcacctgagc tgcgcacgaa cctcgagaaa ctccaaacgg
      121 aacacggcct cgatctccgc agcgacatcg cggcgccttt gggtggtgag tttgccttcg
      181 cgattgatgg tccaatcctg ccgacgccgt cgtggaagct ggtgtttgaa gtgaacgatc
      241 cggcgcacct gcagcagaca ctcgagcgcg tggtgaatga agtcaacaag caggcggcga
      301 agtttggcaa gaccggtttg gcctgggaac agacggaagt aagtggccgg ccgttctaca
      361 aacttaagtc acctgagttt ggactcgtcg aagtgaatta cacgtatgcc aacggttaca
      421 tgattgttgg tccgagccgt gcgctcgtcg agcgggcgct gctggcacat gacagtggtt
      481 cttcactgtt acgctcgcag aagttcgtgg ccggtttgcc ggccgacggg aatgcaaact
      541 tctcggccat cttctatcac aacctcggtg gcctcgtgcc cgctggtttg gcctctacgg
      601 cagagaacca cctgccgagt ggaccacagc aggcagtgaa agcaatcacc gcggacatgg
      661 cgccgaccct cgcgtacgcg tacgcacaag gcgacagcat cacgtttgcg gcgaacaccg
      721 aaggcggacc gtttggtttc ggaccagcga cgctccttgg catgccgaac cagttggaga
      781 tgcaacacat catccagcgc ggcatgaaga ataggaacta acgggtagtt gatccgtggt
      841 taaggcgcgg ccttagccac ggattacaca gagatgcaat gaaactcgta tcaatctccc
      901 tcatctcgtg gtcgttgggt ttgctgttac tgttgtcgac gttttcggtt gacgataaaa
      961 cggtcacgtc tttgataatg gcagcgctcc tgttctccct cgcctatgcg ccgtcgcttt
     1021 cgtggctgcg acgacgcatg ggtggatgca ggccggcgct gctatttcct ctcgcttcag
     1081 ccgtggtcct caacatccct gttttcctga tcgaaattct ggcaattggc agaactttag
     1141 cgccggccga agcgttagca tgcatcggtg catttctgct gatgggcaca gtcttcgggc
     1201 tcggattcgt ttggaattat caggacgcag cgctataaag aaacacgtat ggcactcccc
     1261 gcgacggttc aggaagaact gatccgacca caaacagttg acgacccacc cgtgatcgac
     1321 ctgcatggtc tgagcgtcgc tttcggccgc cgtcaaatac tcaaaaacct gcgaggcgat
     1381 ctgcgcggca aagccatcgg cctgcttggt ccaaacggcg ccggcaagac cacgctgatt
     1441 cacacgctgc tcggctttca tcacccaaac gcgggcacgg cgcagatctt cggacacgac
     1501 atcgtcgacg aagcgaagaa gatcaaatcg ttgattggtt acatgcccga gcgcgatgcc
     1561 ttcatcgcca agatgacggc cgtacacttc gttcgcttga tgggcgagct ttcgggtctg
     1621 ccttccgaag ccgcactcga acgcgcgcat gaagcgctct tctatgtagg cctgggcgaa
     1681 gcgcgttatc gcaagctcga aacctattca ctcggcatga aacaactcgc caagctcgcg
     1741 caggcgatcg ttcatggtcc gaagttgatc tttctcgacg aacccacgaa cggtctcgat
     1801 ccgccggcgc gcttgcgcat gatcaaactc attcgcgaga ttcgcgatag tggtcaagcg
     1861 cacatcgttt tgtcgtcgca cttgctggtc gacgtcgaag aatgctgtga cgagatcctg
     1921 atcctgaagg atggccagat cgccgtctac tgcaatctcg aagaggaacg gaagtcgaat
     1981 cgcaagttcc tcatgctcga gacacgcggc gatcagaagc gctttgtcga ggcgctggca
     2041 ggacttggtt gtgaatacgc gatctcgagt gacagccggc tcaaagtcgt cttgcaggac
     2101 ggtgttgaag tgcgcgattt gtatcggctc gcgggcgaga cgcaggtcca actgcggcgg
     2161 ctgagttaca agcgcgattc gctcgaagac atctttctta aggcaatgga gaacggctat
     2221 ggcggtctat gagcagactt acaagcgcta ccagggaccg ctgacgcccg agtggaaccg
     2281 gttcctgatt attccgcgtc acgcgttccg ctccgttttt agctccaaac tcttcacggc
     2341 gttctttgtg atctgcttcc tgccgctcct ggtggaagcg atcctgatct acctgcacca
     2401 caacttcagc gccatcgcga gcatgaacat caacgtgcgc gagctggtgc cgatcgacgc
     2461 tttcttcttt caaacgttca tcagcattca gggcggcttt gctttctttg tcgcgttgct
     2521 ggttgggcca ccactcgtct cgcgcgacct gcgcaacaac gcgttgccgc tgtatctctg
     2581 ccggccgttt acacggacag agtatgtggt cggcaagatg tcggtgattc tgatcttgtt
     2641 gtcgctgatc acgtgggtgc cgcagttact attgtttctg tttcagtcgt acctcgaagg
     2701 gttcgcgtgg ttcaaggcga atgcctggat gatcaatgcc atcgtcctgg gcgggttagt
     2761 ttgggcggta ctgctcgcgt tgctcacgca aacgatctcg gcgctcgtga aatggcgcgt
     2821 ggtcgcgagt ggcattttgc tggggttgtt ttttattccg acggtgtttg gggcgttcgt
     2881 taacgaagtc ttccagacgc gttggggaaa catcatcagt ctcggcgcgc tgataaataa
     2941 cgtgacctcc ggcctgttcg gtacgttcaa ccgcactttc gacgttattc gcgtcaggga
     3001 ttttggcgaa gacgttgtcc gtgaagttgt gttgtatgag ccgccgttgt gggcttcgtg
     3061 gacggtattg ttcctgatct gcgcggtgtg tctcgcgctg ctgtcgtgga aggtgaaagc
     3121 gtacgaggta gtgcggtaga agccgatgag cattccaaaa gatcaactga tcgttttcga
     3181 caacgtctcg aagttctacg gcgagatact cggcgtgaac cgcgtgaact tgcagatcgc
     3241 gcccggcatc acgagtctcg tcggtccgaa cggagcaggg aagtcgacgt tgatgaatct
     3301 gatgacgggt ctgctgcgtc cgacgcgcgg cacgatcacc ttgctcggta tcccgacgga
     3361 ccaacccgaa cggctcttca ggaaagttgg ttactgcacg cagtttgact cgtttccgcg
     3421 cgggctcacg ggccgcgaat ttctcaactc gtttcttctg gtccacggtt tcgatcgcaa
     3481 acgggccgac gagttgagcc agcaggcgct cgagcgcgtg aacctcgtcg aagccgcgga
     3541 tcgcaaggtt gcgggttaca gcaagggcat gagacagcgt attcgtctcg cgcaggcgat
     3601 cgctcatgag ccgctggtgt tgattctcga cgagccgttg aacggactcg atccgatggt
     3661 gcgtgccgaa acgatcgcgc tgttcagaaa gctcgccgcc gaaggactgc acttgatcat
     3721 ctcgtcgcac atcctgcacg aggtcgacat gatgtccgat cgcgtggtcc tgctgaacaa
     3781 cggttacatc gtggcggaag gaaacattca cggtgtgcgc gacgagatgg aagagcaccc
     3841 gatgcagatc ctgattcgtt gcgatcagcc ggcgaagctc gctgcgtatg tcttcgcgca
     3901 aaaccacgtg gttgaagcca ggttgcacga cgaccgccgc ggtttgtttg tgaagacgcg
     3961 tgatgcggac ggtttttatc tgctgttgaa tcgggcggtt gctgaaggcg cagttaacgt
     4021 cgagtcagtg gcgcctgtcg acgacgacat gagcgccgtt taccagtacc tgatcggcac
     4081 tagcggcgga agcgcgtagg agattagttg aatgagttct gcagttgacg cagttgcaaa
     4141 caacaggcag gggccgctgc cgtgggcgct ttggtttcgc cagatcggcg cgatctttcg
     4201 ttccgacctg caaaagaact ttctcggccg ccgcgctatc ctgatctacc tgctcgcgct
     4261 gctgccgctg tttccgttgc tggttctcgc ggtcttttcg cggcagctca acggcgaatg
     4321 gaaagacctc aataatctca gcctcatcta ttcagtgctt tacaacggtc tcattttgcg
     4381 cacggtcgtg ttcttcggct gcgcatggat tttcatgaac ctgtttcgcg gcgagatcgt
     4441 cgaccggagt ctgcattatt actttttgag tgcagtcagg cgcgaggtgc tggtggttgg
     4501 taagtacttc tcgggcctcg tcacctcaat cgtattgttt accttcacga ctgtcgtctc
     4561 gctgttgctg ctttacttgc cgcaggccta tacgcagagc atgcgctact tcaccgaggg
     4621 ctacgggctg aaacagcttc tcacctacgc gggcatcacg attttggcgt gtattggtta
     4681 cggcgctttc ttcgtcgtgg tgggattgtt tgtgcgcaac ccgatcatcc ccgcggtgtt
     4741 gctttacggc tgggagtggc tcaacttcct gctgccgccg ttgctgaaga agatcagcgt
     4801 cattcactac ctcaactcgc tcgtacccgt tcctgtctct gaagggccat ttgcggtgat
     4861 cgccgaaccc acgcccgtct ggatcgcggt tccgagcatg ttaggtgtga cgctcgtggt
     4921 gctcgtcctc gcggcttatc gcatccggca cctcgagatc cactacggca gcgactgatc
     4981 attcttcaag aagttacctc gagctagcga tgcaaagggt ggaattgcgt tgcgaaaagt
     5041 ggtataagcg acacacccgt tagagcccca gatagcccct atttaaaatc ccccatttgt
     5101 gttgacctgc gtgcggagca aggaaaactc cgatgttaag aacactcgtc ctgtccgttg
     5161 tagtagtgct ctcgtctctt tgt
//
LOCUS       DASWTX010001126         3084 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_125319, whole genome shotgun sequence.
ACCESSION   DASWTX010001126 DASWTX010000000
VERSION     DASWTX010001126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3084
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125319"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1311)
                     /locus_tag="VGD38_17160"
     CDS             complement(<1..1311)
                     /locus_tag="VGD38_17160"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY0729816.1"
                     /translation="MLERRLGQGGMGAVFQARHIFLKTAHAIKVILPDLVGNDPMLTT
                     RFRQEALAAAAIRHQNIIAVTDFGVARGTMPFLVMEFVKGRSLQEIMATEGAMPPQRA
                     WEFISAIAAGVGAAHKQNIVHRDLKPLNIMVQEDVPIAEGVKILDFGLAKIKSGELLG
                     SFIQAQTSGLMGSPFYMAPEQWSDEEPDARADIYSLGVILFQMLCGEVPFKGSSIPSI
                     MKKHLTMPPPSFQSMGVTVPPAIEAVVRHALEKEPAARIDSIETFLKELSAAINSTPF
                     VGSLRETVAMDPNRTMASAVTTLNPPVDLSATSTQPPVGKDTQFAASLELSEPAVSRT
                     EVKTVEDPETTHVQRKVEPAVVPVQPSKPVRQTIEIAPQRRVSPLWIIGAAVLVLIVS
                     GLGISGYLLFRSRQVPVDPGPTPTPTIASNSKADLVAIAGGSFFM"
     gene            complement(1446..>3084)
                     /gene="leuS"
                     /locus_tag="VGD38_17165"
     CDS             complement(1446..>3084)
                     /gene="leuS"
                     /locus_tag="VGD38_17165"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEY0729817.1"
                     /translation="GLNTGLLAINPFSGETIPVWVSNYVLMEYGTGAVMSVPGHDERD
                     FEFAQKYSLPIRQVIAPITHEEISAEPVETVAGDASAEMRESFTGYGVLINSGEWGGK
                     LSEAALFEMAQHAKTNGFGEPAVTYRIRDWGVSRQRFWGAPVPVIYCPNCGMVPVPYE
                     QLPVMLPDNAAFTGTGESPLAGVPEFVNTSCPNCDAPARRETDTMDTFVDSSWYFFRY
                     LDPRNDAAPFDPNLAKHWTPVDQYIGGDSHAVMHLIYTRFWNKFMRDLGLVDFDEPVK
                     RLLTQGMVTNRVEGTDEWKAMSKSLGNGVDPDQMIAAFGADATRLFVLFAAPVENELR
                     WSETGTEGAVRFVRRLYTMVWRWHERLSNSDPADASTLEFSDSARALRRKTHQTIAKI
                     TNDFEHLHFNTSVAALMELFNQLSDFNADPANASESDVFAAREALEALVVMLAPFAPH
                     VAEEMWEGLGHAGGLLQGVRRWPIADPELARREELEIPIQVNGKLRSRVIASPGVSED
                     ELRQSALTDERVQALINGREVVKVIVVPERLVNVVIR"
BASE COUNT          643 a          956 c          874 g          611 t
ORIGIN      
        1 cataaagaaa gagccgcctg caatcgcgac gaggtcggct ttgctgttac tggcgatcgt
       61 cggcgtaggc gttggcccgg gatcgactgg aacttgtctg gaacgaaaca gcaaataacc
      121 gctgatgccg agtccagaga cgatcaaaac caaaaccgcc gcgccgatga tccaaagcgg
      181 agaaactcgc cgctgcggtg cgatctcgat cgtctgcctg accggtttcg acggctgaac
      241 gggaaccacc gcaggctcaa ccttgcgctg cacgtgcgtg gtctcgggat cttcaaccgt
      301 ctttacttcc gtgcggctta ctgcgggctc ggacaactct aaagacgcag caaactgggt
      361 atctttgccg acaggcggtt gcgtcgaggt agcggacaaa tctactgggg gattgagcgt
      421 cgtaaccgcc gaagccatcg tgcggttcgg atccatcgcc accgtctcgc gcaatgaccc
      481 gacgaacggc gtcgagttga tcgcagcgct cagctctttt aaaaacgtct caatcgaatc
      541 gatacgcgcg gcgggttcct tctccagcgc atggcgcaca accgcttcaa tcgccggcgg
      601 caccgtcaca cccatcgact gaaaactcgg cggcggcatc gtcagatgct tcttcatgat
      661 cgacggaatc gaagaacctt tgaaaggcac ttcaccgcaa agcatctgga aaagaatcac
      721 gccgagactg tagatgtccg cgcgcgcgtc gggctcttcg tcggaccact gttcgggcgc
      781 catataaaaa ggcgagccca tcagcccgct cgtctgcgcc tgaataaacg acccgagcaa
      841 ctcgcccgac ttaatcttgg cgagaccgaa gtcgaggatc ttcacgccct cggcgatcgg
      901 cacgtcttct tggaccatta tgttgagcgg cttcagatcg cggtgcacga tgttctgttt
      961 gtgggccgcg ccaacgccgg cagcgattgc cgaaatgaat tcccacgcgc gttgcggcgg
     1021 catcgcgcct tccgtcgcca tgatctcctg cagcgagcgg cctttgacaa actccatcac
     1081 gaggaacggc atcgtgccgc gcgccacgcc gaagtcggta acggcgatga tgttctggtg
     1141 acgaatcgca gcggccgcaa gcgcttcctg ccggaaacgc gtggtcagca tcggatcgtt
     1201 gccgacgagg tccggcaaaa tgactttgat tgcgtgtgcg gttttgagaa agatgtgccg
     1261 cgcctgaaat acggcgccca tgccgccttg cccgagacgt cgttcgagca agtagcgggc
     1321 atcgagcgtg ggttcgccta agatagtggg tgcagtcggt tcaccgtcct gggggcagga
     1381 atcagtttcg tctgggtagc aacgcctgca cttagggcac tctttcatct atgggagagt
     1441 atacctcacc tgataacgac gtttacgaga cgttccggta cgacgatgac cttcaccacc
     1501 tcgcggccat tgattagtgc ctgcacgcgc tcgtccgtga gcgcggattg gcgcagttca
     1561 tcttcagaca cacccggaga agcaatcact cgcgaacgca gttttccgtt gacctggatc
     1621 gggatctcca gctcttcacg ccgcgcgagt tcgggatccg cgatgggcca gcgacgcacg
     1681 ccttgcaaca agccgcccgc gtgacccaag ccttcccaca tctcttccgc gacgtgcggc
     1741 gcaaacggcg ccagcatgac gacgagggct tccaacgcct cgcgcgccgc gaacacatca
     1801 gactcggaag cgtttgccgg atcggcgttg aagtcgctca actgattgaa caactccatc
     1861 aacgcggcga cgctcgtgtt gaaatgcagg tgttcgaagt cgttcgtgat cttcgcgatc
     1921 gtctggtgtg tcttacgtcg caaagcgcgc gcgctgtcgc tgaactcgag cgtgctcgcg
     1981 tcagccgggt cgctgtttga gagccgctca tgccaacgcc acaccatcgt gtacaagcga
     2041 cgcacgaacc gcacggcgcc ttcagttccc gtttcagacc aacgcaactc gttctcgacc
     2101 ggcgccgcaa acagcacaaa cagcctcgtc gcatcagcgc caaacgccgc gatcatctga
     2161 tcgggatcga cgccgttgcc gagactcttc gacatcgctt tccactcgtc ggtgccttcg
     2221 acacggttcg tcaccatgcc ctgcgtcaac agacgcttca ccggctcgtc gaaatcaacc
     2281 aggccgagat cgcgcatgaa cttgttccag aagcgcgtgt agatcaggtg catcacggcg
     2341 tgtgaatcgc cgccgatgta ctggtcaacc ggcgtccaat gcttcgccag gttcggatcg
     2401 aacggcgcgg cgtcgttgcg tggatcgaga tagcggaaga agtaccacga cgaatcgaca
     2461 aacgtgtcca tcgtgtctgt ttcgcgccgt gcgggagcgt cacagtttgg acagctcgta
     2521 ttcacaaact ccggcacgcc tgccaatggc gactcgccgg tgccggtgaa cgcggcgtta
     2581 tcgggcaaca tcaccggaag ctgctcgtaa ggcaccggga ccatgccgca gtttggacaa
     2641 tagatcaccg gcacaggcgc gccccagaat cgttgacgcg acacgcccca atcgcgaatg
     2701 cgataggtga ccgccggttc gccaaagccg ttcgtcttgg cgtgttgggc catctcaaac
     2761 aacgcggctt ccgacagttt gccgccccat tcaccgctgt taattaaaac gccgtaaccc
     2821 gtgaacgact cgcgcatttc tgccgacgcg tcgccggcaa cggtttcgac cggttcagca
     2881 ctgatctctt cgtgagttat gggagcaatc acctggcgga tcggtaacga atatttctgc
     2941 gcaaactcaa aatcgcgttc gtcatgaccg ggaacactca tcaccgcgcc cgtgccgtat
     3001 tccatcagca cgtaattcga tacccagacg ggaatcgtct cgccgctgaa gggattgatc
     3061 gcgagcagac ccgtattgag tcct
//
LOCUS       DASWTX010001127         2728 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_252497, whole genome shotgun sequence.
ACCESSION   DASWTX010001127 DASWTX010000000
VERSION     DASWTX010001127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2728
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252497"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(302..637)
                     /locus_tag="VGD38_17170"
     CDS             complement(302..637)
                     /locus_tag="VGD38_17170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729818.1"
                     /translation="MDERDNFASRTLCFILPAPINALRRKCDLAQILPIPKIMARPNS
                     NMSALIEILDLCAETLTSLNAERQRSKSKKNVKQAGQTWKSGPERSAPRLLLLAGGLA
                     HRKPRDSSR"
     gene            1026..2126
                     /locus_tag="VGD38_17175"
     CDS             1026..2126
                     /locus_tag="VGD38_17175"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY0729819.1"
                     /translation="MTNAEILAPLHQTYGVGYSGDRIPYALVEGIEQILNALQARKLT
                     RRRRPLSSTTVYSKTSSKAAGLRIPDVRMRVVVTGGSGRLGQYVIRELFTHAHGVSSL
                     DVVKPRECLCPTHVVDLEKLDALAAHLKNADAVVHLARIRFPYTETGFDPAQQRWMFV
                     DPAGDADRFKQNVAMTNHVLTAAEACGIRRVVCGSSLAVYGLYYPATPMLPDYLPVDE
                     EHPRRPQDPYGLTKLVGEQLCDAFALRTGAQVASLRFAGVYTEAHRPMLVEQRKDPLI
                     RGTGALWSYVDARDAARACRLALEAQFSAHRAFNICAPRTMMNIPTRDLIRNYLLGVA
                     DLRAGLDDCESGYSVLKARETLNFEARCSLVD"
     gene            2319..2507
                     /locus_tag="VGD38_17180"
     CDS             2319..2507
                     /locus_tag="VGD38_17180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729820.1"
                     /translation="MFVIARSITSSPSPEPSAGSDRLTSKLMLDKTVKEYYRGEAALP
                     TDAMGQQLLRYWSEYGLR"
BASE COUNT          596 a          732 c          793 g          607 t
ORIGIN      
        1 aacacggcct ttcatcgggg atcgattcag gtcgagcgcg caatcgctgc cggtgccgcg
       61 cagatcctgc acaagccgac tccgttgaag gtttttcagg aagtcgcaca ccgctatctt
      121 tccgaagact cgctttcggc caacgtagtc gccaactaat ctgtttcctc ccgtcagtca
      181 gcaattcgcc agagtgctcg caatgtgttg tggcttcggc gcgctacgta gcactccagg
      241 gattgatgac gatcatgtcc tccagctctt cggctgggag ccaagcacaa actgacgaga
      301 actagcgaga cgagtcgcgg ggtttgcgat gggcaagtcc gccggcgagc agtaacagcc
      361 ggggggccga tctttcgggt ccggatttcc aggtctgtcc ggcttgtttc acattctttt
      421 tcgattttga tcgttgcctc tctgcgttga gggaggtcag cgtttcagcg cacaaatcca
      481 aaatttcaat aagcgcgctc atgttgctat tgggtcgggc catgattttt ggaataggca
      541 aaatctgtgc aagatcgcac ttgcgccgca aggcatttat gggcgctgga aggataaaac
      601 acagcgtccg cgatgcaaaa ttgtcgcgtt cgtccataaa ccactcactt ttttgtgacg
      661 gtgcgacgtt caatcaaatg cgaacgatgt taccgcgagg aaaaacgtat gaactcgatc
      721 aggctttccc ctgccgagct cagggccttt gccggatgat aaatcatgtc gggtttgggt
      781 gtgaaatgag gcagaagctt ttcagctatc ggatctccat gtggactgtt caagacaatc
      841 caactacgcg ttacataaat taagattgac actgcttcga gccggtcgag agtatggccc
      901 cgcctcggta ttcttcgatg agaaaaggtg caacgtcgtt cttcatgcaa ggattacgca
      961 ggagcttcag cgtctccgcg cggataagga gttcagcatg aaagtgcttt tcaaaataca
     1021 ccaaagtgac gaacgccgag attttggcgc cgcttcatca aacgtacggc gtgggctaca
     1081 gcggcgaccg aatcccttat gcacttgttg aaggcatcga gcagattctg aacgcactcc
     1141 aggcaaggaa gctcacgagg cgaaggcggc cactttcatc gacaacagtg tactcaaaga
     1201 cctcgagcaa agcggctggt ttaagaatcc cggacgtgag gatgcgtgtt gttgtgaccg
     1261 gcggctccgg acgattaggc caatacgtta tccgggagct tttcacccat gcacacggcg
     1321 tttcgtcgct cgacgtcgtc aagccgcgcg aatgcctctg tccgacccac gtggtcgacc
     1381 tggaaaaatt ggatgcgctc gcggcccacc tcaagaacgc agacgcggtc gttcatctcg
     1441 cgcgcattcg ctttccctac actgaaaccg gcttcgaccc agcgcagcaa agatggatgt
     1501 tcgtcgatcc cgcaggcgac gccgatcggt tcaaacaaaa cgttgctatg acgaatcatg
     1561 tgctcacagc ggccgaggca tgcggtatcc gccgggtggt ctgtggttcc agcctggcag
     1621 tttatggcct ttactacccg gcaacgccga tgctgccgga ctatctgccc gtggacgagg
     1681 aacatccgcg acggccgcag gacccttacg gcttgaccaa actcgtgggt gagcagcttt
     1741 gcgatgcatt tgcgttaaga accggagcgc aagtggccag tctgcgcttc gccggagtct
     1801 acacggaggc acatcggccc atgctggtcg aacagcgcaa agaccctctg atacggggta
     1861 ccggcgcact ctggagctat gtcgatgctc gcgacgccgc gcgcgcctgc cggcttgcct
     1921 tggaagcaca attttccgcg catcgagcat tcaatatctg cgcgcccaga acgatgatga
     1981 acattccgac gcgcgacctg atcaggaact atctgcttgg agttgccgac cttcgcgcgg
     2041 gattggacga ctgcgagagc ggttacagcg ttttgaaggc tagggaaaca ctgaatttcg
     2101 aagcgcgctg ctcgttggtc gattagtgca gtggaattcg gaagttgctg gtcctggtag
     2161 gatggatctg cgaatcaagc tcaccccttc ctttatcctt ccccgtcaag ggggaaggaa
     2221 tggaaagggt gcggcgcaca ttgtgaactg ccagccagca atctttattt tcaaaggagt
     2281 actgtgggcg ctgaccgcgg tttcaggccg ccatgggcat gttcgtgatc gcacgcagca
     2341 tcaccagttc tccgtctccg gagccttcgg cgggttcgga ccgtctgact tcaaagctga
     2401 tgctcgataa gacggtcaaa gagtactatc gcggcgaggc ggcgttgccg accgacgcaa
     2461 tgggccagca gcttttgcgc tactggtcgg agtatggttt gagataaggg atcagtctgt
     2521 gcaaaccgtt caattcgttc gaatcgttca agccgtttag gagttaacaa cgcggtgcaa
     2581 aaggcaacca cgacgaagaa gcgggtgacc gtagcggata ttccgcgggt ggggccggga
     2641 acgccttgcg gcgaatggtt tcgccggtac tgggtggtgg tcggaacggc gcaggagctt
     2701 tacgacatac cgcaggcggt gaaagttc
//
LOCUS       DASWTX010001128         1629 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_275812, whole genome shotgun sequence.
ACCESSION   DASWTX010001128 DASWTX010000000
VERSION     DASWTX010001128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1629
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275812"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..492
                     /locus_tag="VGD38_17185"
     CDS             <1..492
                     /locus_tag="VGD38_17185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729821.1"
                     /translation="AYLPHGAGPAMVGAGARVNVDLYVNSYTSDTDAKTLAAALIEGG
                     SPSLLKQLEKAKSIGKVRLVGRAGFYDFKLIRSHQIEGGRRIYAVGDRPMGFLEVYAG
                     GRSMDYPFGIMQLDLKRNEKGKEEGKGALIYAAKIKVLENNRIEVESYGVGAIELMAV
                     RKL"
     gene            complement(489..1073)
                     /locus_tag="VGD38_17190"
     CDS             complement(489..1073)
                     /locus_tag="VGD38_17190"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEY0729822.1"
                     /translation="MNYLGVTQSDYELTQAIAKGGISSIGDLYVRHRPKVYAVCLQMT
                     KNTSEAEDLTQDIFVQLLHTIGSFRGDSQFSTWLYRVTTNHVLMHFRRSSRRREKFPC
                     VNDEGATSSKTNVSSGQQVLDRIVIDDALAKLPSGSRSVFMKFDVEGYKHEEIARILG
                     CSVGNSKSQLHKARRKLRKLLSRGANSGSSRRVC"
     gene            1212..>1629
                     /locus_tag="VGD38_17195"
     CDS             1212..>1629
                     /locus_tag="VGD38_17195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729823.1"
                     /translation="MKTNTPFSWRTPAVLMLFLAASLAFHSSSASAQTTEPAKPAPEV
                     EQLKKRLQLLEQTVLELKAQIGAIEDKKTNPAPAIIDATYSEPSKPVEPAPETAPDKP
                     QDNNNGRGESTFQIYGFAMLDAGYQFKQNHPDWFDVI"
BASE COUNT          414 a          454 c          434 g          327 t
ORIGIN      
        1 gcgtatttgc cgcacggtgc tggtccggca atggtgggag ccggcgcgcg tgtgaatgtc
       61 gatctttacg tcaacagcta caccagcgat acggacgcaa aaacactggc tgccgcgctg
      121 atcgaaggcg gttcaccgtc gttactcaaa caactcgaaa aagccaagtc gatcgggaag
      181 gtgagactcg tggggcgagc aggcttctac gatttcaaac tcatccgttc gcaccagatc
      241 gaaggcggca gacgcatcta cgcagtcggc gaccggccga tgggttttct cgaagtctac
      301 gccggcggcc gatcgatgga ttacccgttc gggatcatgc agctcgatct gaagcggaac
      361 gagaagggca aggaggaagg caagggagca ttgatctacg cggccaagat caaagtcctg
      421 gaaaacaacc ggatcgaagt tgagagttac ggcgttggcg cgatcgagtt gatggccgtg
      481 cgcaagctct aacacacgcg ccgcgagctt ccggagttgg ctcctcgcga caacagtttt
      541 ctcaatttac ggcgcgcctt gtgaagttgc gacttggagt ttccgaccga gcagccgagg
      601 attctggcga tctcctcatg cttgtaacct tcgacgtcga acttcatgaa caccgaacgt
      661 gagcccgagg gcaacttcgc aagcgcgtcg tcgataacga ttcgatccaa aacctgttgg
      721 ccggacgaga cattcgtctt tgacgatgtc gcaccttcat cattcacaca aggaaatttt
      781 tcccgccgcc ggctgctgcg ccggaagtgc atcaggacgt gattggtggt cacacgataa
      841 agccacgtac tgaactggct gtcgccgcga aacgaaccaa tcgtgtgcag caactgaacg
      901 aaaatgtcct gcgtgagatc ctcagcctca ctggtgttct tggtcatctg caaacagacc
      961 gcataaacct tcggtctgtg ccgcacatac aggtcgccaa tactcgaaat accacctttg
     1021 gctatcgcct gtgttagctc gtaatcagac tgcgtgacgc caagatagtt cataagttac
     1081 aggcggagtc tatgaagcag tgtcgtgcca gtcacctgta acttttgcca gtttcggagg
     1141 tttggacctg ctcctacatt tcgaaaccag cagaacagta atccgcccct acaaagttgg
     1201 agaacggcac aatgaaaacg aacactccgt ttagctggag aacacccgcg gtcctcatgt
     1261 tgtttcttgc agcttcgctc gcgtttcaca gtagttcggc gtcagcacaa acgacggaac
     1321 cggcaaagcc ggcgcccgaa gtcgaacaat taaaaaaacg tttacaacta ctcgaacaaa
     1381 cagttctgga actgaaagca cagatcgggg cgattgaaga caagaagacc aatccggctc
     1441 ccgcgatcat tgacgcgact tattccgagc caagcaaacc agtcgagccc gccccggaaa
     1501 cagcacccga caagccgcag gacaacaaca acggcagagg cgagagcacg tttcagatct
     1561 acggcttcgc gatgctcgac gcgggttacc agttcaaaca aaaccatccc gactggttcg
     1621 acgtcattc
//
LOCUS       DASWTX010001129         1723 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_106802, whole genome shotgun sequence.
ACCESSION   DASWTX010001129 DASWTX010000000
VERSION     DASWTX010001129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1723
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106802"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..203)
                     /locus_tag="VGD38_17200"
     CDS             complement(<1..203)
                     /locus_tag="VGD38_17200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729824.1"
                     /translation="MRTMQISNRLESGVIACIFLIAVFAPHSIAITQTAWLVGMALWL
                     LRFAFFPRPQLFRTPVDYVLIGF"
     gene            249..1475
                     /locus_tag="VGD38_17205"
     CDS             249..1475
                     /locus_tag="VGD38_17205"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY0729825.1"
                     /translation="MRFALLILFVLSVGLPVCAQSPADEVKAVQADARVKAAVDFIDK
                     DRDAILREWIAITEINAPSQHEQERAKFLESLLRKHKLDIRYDSAGNLIATRKGTAGK
                     PVTVFDAHMDTVFQPGLKIKATVRDGRIYAPGVGDDTRNIEALLATIRALDAANIKTK
                     GDLVFLFTTEEETSMAGAEQYTKDNKGTVDYYVALDGGYEGFTYAGIGINWYRHHVIG
                     PGGHTRSRTPPYSASLPLARAISRIYQLKVPTNPSSNLNIGMLGGSEVVNAKASDAWF
                     TVDLRSTSNEVIADLEKQIAAILDEEAKREGMTVKTDIISSSPAAVLPGNRESRLVKV
                     AEAVHRAMGFNPPIGNAGSNNSSAALLQGISSISTGAGPCSDTHALTENCEIEPLYKG
                     IKKVLLLGVVLAGLSE"
     gene            complement(1482..>1723)
                     /locus_tag="VGD38_17210"
     CDS             complement(1482..>1723)
                     /locus_tag="VGD38_17210"
                     /inference="COORDINATES: protein motif:HMM:NF014453.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEY0729826.1"
                     /translation="VVGPRPPIPYEVEAYELWHRKRLDMKPGLTGLWQVSGRNRLPFE
                     EMVRLDLFYIENWSLLLDLKIILRTGFVMIGREGY"
BASE COUNT          409 a          498 c          486 g          330 t
ORIGIN      
        1 aagaagccga tgagcacata gtcgacaggc gtgcgaaaaa gctgcgggcg cggaaaaaag
       61 gcgaatcgca ggagccaaag cgccatgccc accagccaag cggtttgcgt gatggcgatg
      121 gaatgagggg cgaagacggc gatgagaaag atacaagcaa tgacgccgct ctcaaggcga
      181 ttcgaaatct gcatcgtccg catattagaa tgaccacggt ctactattcc aactcaaaag
      241 agagttccat gcgattcgcc ctgttaatcc tgtttgtttt gtctgttggt ttgcccgtgt
      301 gtgcccagtc gcctgccgat gaggttaagg ctgttcaagc cgatgcgcgc gtcaaagcgg
      361 cggtggattt tatcgacaaa gatcgcgatg cgatcctgcg cgagtggatc gccatcaccg
      421 agatcaacgc gccttcccaa cacgagcagg agcgcgcgaa gttcctcgaa agtctactgc
      481 gcaaacacaa actcgacatt cgttacgaca gcgccggaaa cctgatcgcg acgcgcaaag
      541 gcaccgccgg caagcccgtc acggtcttcg acgcgcacat ggacaccgtc ttccaaccgg
      601 gactgaagat caaagccacc gttcgcgacg gccgcatcta tgcgcccggc gtcggcgacg
      661 acacgcgcaa catcgaagcg ctgctcgcca ccattcgcgc gctcgacgcc gcaaacatca
      721 aaaccaaagg cgacctcgtc ttccttttca cgaccgaaga agaaaccagc atggccggcg
      781 ccgaacaata caccaaagat aacaaaggca cggtcgatta ttacgtcgcg ctcgacggcg
      841 gttatgaagg ttttacttac gccggcatcg gcatcaactg gtatcgccat catgttattg
      901 gaccaggcgg gcacacgcgt tcgcgcacgc cgccgtattc cgcgtcgctg ccgctggcgc
      961 gtgcgatctc gcggatttac cagttgaaag ttccgaccaa tccgtcgtca aacctgaaca
     1021 tcggcatgtt gggtggttcg gaagtcgtaa acgcgaaagc ctctgacgcg tggttcacgg
     1081 tcgacctgcg ttcgaccagc aacgaagtga tcgccgatct cgagaaacag atcgccgcga
     1141 ttctcgacga agaagccaag cgcgagggga tgactgtaaa aaccgacata atttcgtcgt
     1201 cgcccgcggc ggtgttgccg ggcaatcgcg agtcgcgcct ggtgaaggtc gcggaagcgg
     1261 ttcatcgtgc gatgggtttc aatccgccga ttggaaatgc gggctcgaac aactcgagcg
     1321 ccgccctctt gcaaggcatc agttcgattt caacgggtgc tggtccatgc agcgacacac
     1381 acgccttaac cgagaactgc gagattgagc cgctctacaa aggtatcaag aaggttttgc
     1441 tgttaggcgt tgtgttggct ggcctcagtg aatagttcag gtcaataacc ttcgcggccg
     1501 atcatcacga agccggtgcg caggatgatc ttgaggtcga gcaacagcga ccagttctcg
     1561 atgtagaaaa gatccagccg caccatctct tcgaacggca gacggttcct tcccgacacc
     1621 tgccacaatc cggtcagtcc cggtttcatg tcgagacgtt tgcgatgcca gagttcgtaa
     1681 gcctcgactt cgtacggaat cggcgggcgt ggtccaacca cgc
//
LOCUS       DASWTX010001130         3379 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_300494, whole genome shotgun sequence.
ACCESSION   DASWTX010001130 DASWTX010000000
VERSION     DASWTX010001130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3379
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300494"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..313)
                     /locus_tag="VGD38_17215"
     CDS             complement(<1..313)
                     /locus_tag="VGD38_17215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729827.1"
                     /translation="MPIQESSATALVRFTGLGIVCFNKQQQRGEIAGIRDHKHVLTIR
                     IQRPVYQDGAEKDVIAYKDVATYENLPKDNVSIEIKASGNPPIAGYQIYQNGEFDRLN
                     SH"
     gene            complement(400..960)
                     /locus_tag="VGD38_17220"
     CDS             complement(400..960)
                     /locus_tag="VGD38_17220"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0729828.1"
                     /translation="MTNSGQPLAGVKLRLEGSKATVATTDANGYYSFSDLRAGGNYTV
                     TPVRDKTDFKPLHRSFDNLTHDGSADFNGDGKRDSEPPVKCDEGRERQIIIDTYSARW
                     RESVERERQKVIAENTRDGERAEATLVPQESQFQFFKECKAATVTANFTWQIKASRPQ
                     APARDLNVSRQQTHLCGKMLGKWNCR"
     gene            992..1288
                     /locus_tag="VGD38_17225"
     CDS             992..1288
                     /locus_tag="VGD38_17225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729829.1"
                     /translation="MCGESEVEVGEVESVGGDVESVVGDEESVVGDDVSGVGPEVSDA
                     GVDVSVAGDGDGDSGANRNSGGHSPGKLASTGDRETTKDCSTGGIVAAGVVSTT"
     gene            complement(1530..>3379)
                     /locus_tag="VGD38_17230"
     CDS             complement(1530..>3379)
                     /locus_tag="VGD38_17230"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CHAT domain-containing tetratricopeptide repeat
                     protein"
                     /protein_id="HEY0729830.1"
                     /translation="IDALTVHYAEIGEFETALSYAAKMLSDKEVYSESLNQSLRDKGT
                     LAFLSLKLKFFSTSLSLAREHLSINQETAPNTSRINDSLRRMIDAAVGKDDFPAALSY
                     AEQSLQIALAREAAPEKTRTTARIYLLLADIKSRTKNWNEALTNYDKALELYGQFPEV
                     SDSLYQAHKGRLFCFQQLDRAEDFASELQIVLKLAEDYRTNVREDRSRQAFFENEQIV
                     FDAATANALKQRDLYTAFEFSEAARARSLLEFVKSEKPIAEVEKDYASIVKPLRLTEI
                     QQRLPPQVQLVQYTLLPDKLAIWIVSQRRFDSLEKQITATALEEKVDAYQASIVNKAK
                     PAEINQAAQELYQLLIPSDLTHGQQLCLVPDKSLHQLAFATLVSPAGMYLLEDYALFY
                     APSASVLVLASENAKRKEQVSDERLLSIGNPHFDREENPNLPHLEDAESEARITAANY
                     RKPQALFGDEATKEKFLRSFTGVEVVHFAGHFVTNRTSPGNSKLLFASGDLRSSELAA
                     YKLPLAKLVVLSACETFIERYNTSEGAIGVARTLLALGAPVVVASQWRVDSTPTRDLM
                     IAFHGNRKQKRMTSAESLRQAQLELLNRTETSAPFYWAAFSLFGGYANY"
BASE COUNT          718 a          903 c          942 g          816 t
ORIGIN      
        1 cgtgcgagtt gagccggtca aactcaccgt tttgataaat ctgataaccc gcaatgggtg
       61 gattacctga agccttgatc tcgatgctca cgttatcttt gggaaggttt tcatacgtcg
      121 cgacgtcctt gtaagcgatg acgtctttct cagcgccgtc ctgataaacg ggccgctgga
      181 ttctgatcgt caatacgtgc ttgtggtcgc gaataccggc gatttcacct cgttgctgtt
      241 gtttgttgaa acagacaatt ccgagaccgg taaatctaac gagtgcagta gctgaacttt
      301 cctggatagg catgatcttc tcctaatggt tgcgttatta aagagctgtc agataggagt
      361 gacgtttaag gctgagacgt aacgcgacga aggatcagat catctgcaat tccacttgcc
      421 gagcattttc ccgcagagat gcgtttgttg ccttgagacg ttcaggtctc tagccggcgc
      481 ttgtggacgg ctcgctttga tttgccaggt gaaattggca gtaacagttg ccgctttaca
      541 ctctttaaag aactgaaact gagattcctg cgggaccagg gtggcttcag ccctttctcc
      601 gtcacgagtg ttctcggcga taactttctg gcgttcgcgt tcgacactct ctcgccaccg
      661 ggcgctgtac gtgtcgatga tgatttgtct ttcgcgacct tcgtcacact tcacgggcgg
      721 ttccgaatcg cgcttgccgt cgccgttgaa gtcggccgat ccgtcatgcg tgagattgtc
      781 gaaggaacga tgcagcggtt tgaaatccgt tttgtcgcgg acgggagtga cagtgtaatt
      841 gccgcctgcg cgcagatcgc tgaaagagta gtagccgttc gcatcggtcg tggcgacggt
      901 ggcctttgag ccttcgagtc tgagcttgac gccggcgagt ggctgacctg agttagtcac
      961 acggccgctg atcttgtaga caacatacgt cgtgtgtggc gagtcagagg ttgaagttgg
     1021 cgaggtcgag tcagtaggtg gagacgtcga gtcggtagtc ggagatgaag agtcagtagt
     1081 cggcgacgac gtatccgggg ttggaccaga agtgtccgac gccggagtgg acgtttctgt
     1141 tgctggagac ggcgatggcg attccggagc taacaggaac tcgggtggcc actcccctgg
     1201 caaacttgct agtacgggtg atcgcgaaac aactaaagac tgcagcaccg gcggtatcgt
     1261 tgcggcgggt gtcgtctcga ccacgtaaga tctcgagaca accatcgcca caatcaacgt
     1321 cgtcatcccg ctcagaacaa gacgccgcaa tcttattttg cgccgctgtc ttctcaacgt
     1381 ccgcgtgttt tcttcaataa cgcgaacgcc ttcctgccaa ctctcgctgt ccggcgccac
     1441 ggtcagcaac ggccagccgt ccgcaaggca gaacgcgagg gcttcatcgg catagtaggc
     1501 gcgacatttt gggcacgcac ggatcatcgt tagtagttgg cgtaaccacc gaacagcgaa
     1561 aacgcggccc aataaaacgg agcactcgtc tcggtcctgt tcagcagttc gagctgcgcc
     1621 tgtctcaaac tctcagccga cgtcattcgt ttttgtttgc gattgccgtg aaacgcgatc
     1681 atcaaatccc tggtcggcgt tgaatcaacc cgccattgac tcgcgaccac aaccggcgcg
     1741 cctaacgcca gcaaagttcg cgcaacgccg atggcgcctt cgctcgtgtt gtagcgctcg
     1801 atgaaggtct cgcatgcaga caggaccact aacttcgcca gcgggagttt gtaggcggcg
     1861 agttcggacg aacggagatc gccgctcgcg aacaggagct ttgagtttcc cggcgatgtc
     1921 cggttcgtca caaagtggcc ggcgaagtgc acgacttcga cacccgtaaa gcttcgcaga
     1981 aacttctctt ttgtggcctc atcaccaaac aacgcttgcg gcttgcggta gtttgcggcc
     2041 gtgatccggg cttcggactc agcgtcttcc aaatgcggca aattgggatt ttcttcgcgg
     2101 tcaaaatgag gattgccgat gctgagcaaa cgctcgtcgc tcacttgctc ttttcgcttc
     2161 gcgttttcgc tggccaggac cagcaccgac gcactcggcg catagaacaa agcatagtct
     2221 tccaacaaat acattcccgc gggcgaaacg agtgtggcaa acgcgagctg atgtagcgac
     2281 ttatccggca caaggcaaag ctgctggccg tgcgtgagat cagacgggat caaaagctga
     2341 taaagctctt gcgccgcctg gttgatctcg gcgggctttg ctttgtttac gatcgacgcc
     2401 tgataagcat cgaccttttc ttcgagcgca gttgccgtga tctgcttttc gagcgaatcg
     2461 aaacgtctct gcgacacgat ccagattgcg agtttgtcag gcaacaatgt gtattgaacg
     2521 agctggacct gtggcggaag gcgctgctgg atctcagtca aacgtagagg cttaacgatt
     2581 gacgcgtagt ctttttcgac ttcggcgatc ggcttttccg acttaacaaa ttccagcaac
     2641 gaacgagccc tcgctgcttc gctaaactca aatgccgtgt aaagatcgcg ttgcttcagc
     2701 gcattcgccg tagccgcatc aaacacgatc tgctcgttct cgaagaatgc ctggcgtgat
     2761 ctgtcttcac gcacgttggt gcgataatcc tcggccagct tcaacacaat ctgcaactca
     2821 ctcgcaaaat cttcagcccg atcgagttgc tggaaacaga acaacctgcc cttatgcgcc
     2881 tggtacaaac tgtcgctgac ttcgggaaac tggccgtaca gttccagcgc tttgtcgtaa
     2941 ttcgtcaaag cctcgttcca gttcttcgtg cggctcttga tgtccgcaag caggagatag
     3001 attcgcgcgg tcgtgcgtgt cttctccggc gcggcctcgc gggcgagagc aatttgtaac
     3061 gactgttcgg catagctcag cgcagcaggg aagtcgtctt tgcccaccgc tgcgtcgatc
     3121 attcgacgca atgaatcatt gatccggctg gtgttgggcg ctgtctcctg gttaatgctc
     3181 aagtgctcgc gagccagact caaagaagtc gaaaagaatt tcagcttgag tgaaagaaag
     3241 gcgagtgttc ctttgtcgcg cagcgattgg ttgaggcttt cggaataaac ctctttgtcg
     3301 gaaagcattt tggccgcata agacaaggcc gtctcaaact caccgatctc ggcatagtgc
     3361 actgtgagag cgtcgatgg
//
LOCUS       DASWTX010001131         2562 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_252540, whole genome shotgun sequence.
ACCESSION   DASWTX010001131 DASWTX010000000
VERSION     DASWTX010001131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2562
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252540"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..445)
                     /locus_tag="VGD38_17235"
     CDS             complement(<1..445)
                     /locus_tag="VGD38_17235"
                     /inference="COORDINATES: protein motif:HMM:NF014757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HEY0729831.1"
                     /translation="MGAQIAAHLANAGVPTILLDIAPRELTPEEQKKGLTLQSPQVRN
                     RIARNGFEAAKNGKPAAFFTPDNAALVTVGNFDDDLAKLKDRDLIVEAVVENLDIKRS
                     LYERVEQHRKPGSIVASNTSGIPIHLLAEGRSDDFKQHFLGVHFFN"
     gene            769..1101
                     /locus_tag="VGD38_17240"
     CDS             769..1101
                     /locus_tag="VGD38_17240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729832.1"
                     /translation="MTAPETMIETELDVLRDVSRRLESAGISFMLTGSVAMNYYALPR
                     MTRDIDLVVSLNETQIEEFFRLFESEYYFDRQSVTHAISRCGMFNLIHSAKTLNVDVL
                     LEEVLAHE"
     gene            1094..1342
                     /locus_tag="VGD38_17245"
     CDS             1094..1342
                     /locus_tag="VGD38_17245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729833.1"
                     /translation="MNDTSPDIAAIFRERLLSRSGAERVAMGSRMFDVARTIALASFP
                     PGLSEIETKRRLCQRLYGNEVSVEAYIEHLVQNSLNPD"
     gene            1484..1831
                     /locus_tag="VGD38_17250"
     CDS             1484..1831
                     /locus_tag="VGD38_17250"
                     /inference="COORDINATES: protein motif:HMM:TIGR03433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEY0729834.1"
                     /translation="MPKDKQEVLPGTLNLLVLKTLGTMGPLHGYGIARRIEQVSGDLL
                     EVNQGTIYPALLKLEQLGWIRAKWSVSENNRRAKFYSLTRAGQKQLLKEEDEWNRTSA
                     IVTRFLTPAEEEQ"
     gene            1828..>2562
                     /locus_tag="VGD38_17255"
     CDS             1828..>2562
                     /locus_tag="VGD38_17255"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease prefix domain 1-containing protein"
                     /protein_id="HEY0729835.1"
                     /translation="MSRLRILLSRLRGLFRKRNLEQELADEIQSHLEMQMDDYARQGM
                     NPEEARYAALRKFGGVDQVKEKYRDRRGLPFVETFLRDLGYGARMLRRSPIVTTVAIL
                     SLALGIGANTALFSVVDAVLLKPLPVEAPDRLLVFEWQAGRAFRTTGMSGTSNVTVPP
                     NMRGLSLFRYEIVERMQQARVAGGSETPLSDLFAFGPLSKLTARVGDEAEIIKGQAVS
                     GNYFAALGLQPSLGRAITPDDDRSGAS"
BASE COUNT          574 a          704 c          695 g          589 t
ORIGIN      
        1 gattaaagaa atggacgccg aggaaatgtt gtttgaagtc gtcggagcga ccttctgcga
       61 gcaggtggat cggaatgccg ctcgtgtttg aagcgacgat cgagcccggc ttacgatgtt
      121 gttcgacgcg ttcgtagagc gagcgcttga tgtcgagatt ctcgacaacg gcttcgacga
      181 tcaggtcgcg atccttgagt ttcgcgaggt cgtcatcaaa attcccaacc gtaaccagcg
      241 cagcattgtc cggcgtaaaa aacgccgccg gcttgccatt cttcgcggcc tcaaaaccat
      301 tgcgcgcaat gcgattgcga acctgcgggc tctggagcgt cagtcccttc ttctgttcct
      361 ccggcgtcaa ctcgcgcggg gcaatatcga gcaggattgt cggcacccct gcattcgcga
      421 ggtgcgcggc aatctgcgcc cccatagttc ccgcccccag cacagccgcc ttctcaatcc
      481 gcctcatgca ctctgtccct ctttcgacac gaactccagg atagctataa aacgagagcg
      541 ccatattaac tgaatgagcg ctcattcagc aagcacttct aacatccaac tgtcaccgcc
      601 tagtggtggg gtgtgtaggt tggggcgtct atccctcacg actccgttcc gtcccaagaa
      661 caaggctacg ggcaggctgt ctcggagatg ttatgattct attggtgcaa acactcattt
      721 gatcgtggct gaagcttggt cttctccctg gtcgcggctc aagaatgagt gaccgcgcct
      781 gaaacgatga ttgaaactga acttgatgta ctccgtgatg tgtcccgccg ccttgaaagc
      841 gcggggatat cgtttatgct gaccggttcg gttgcgatga actactatgc cctgccgcgc
      901 atgacacgag atattgacct cgtggtctcg ctcaatgaaa ctcagattga agaattcttc
      961 cgcttgttcg agagcgagta ctattttgat cgacagagcg ttactcatgc tatttcccgg
     1021 tgtggaatgt tcaatctcat tcacagcgcg aagactctaa acgtggatgt attgctggag
     1081 gaggttctgg ctcatgaatg acacctcacc agatattgcc gcaatttttc gcgaacgttt
     1141 gctgtcgcgg tccggtgcag aacgagttgc aatgggtagc cgaatgttcg atgttgcgcg
     1201 aactatcgct ctcgcttcat ttcctcccgg cctttctgag attgaaacaa agcgtcgctt
     1261 atgccagcgg ctttacggca acgaggtaag tgttgaggct tacatcgaac atctcgttca
     1321 aaactcactg aaccctgatt agtcctgcgc tcttgtgctt cactggggaa cagcgcttta
     1381 catgatcgtc gttgccgctt tccttcttag acaacagaat tcctgttgac taccaacagg
     1441 taaccgcatt atgctcctgt tgataatcaa caggagactg ccgatgccca aggacaagca
     1501 ggaagtttta cccggaaccc tcaacctatt ggtcctcaaa acgctcggaa ccatggggcc
     1561 gttgcatggt tacggaattg cccggcgaat cgagcaggtc agtggcgatc ttctcgaagt
     1621 caaccagggg acgatctacc cggcgttgct gaagctcgag caactgggct ggatccgcgc
     1681 caagtggagt gtgtcggaga ataatcgacg cgccaaattc tattcgctca cccgcgccgg
     1741 acaaaaacag ctccttaaag aagaggacga gtggaacagg acatccgcta tcgtcactcg
     1801 cttcctcaca cccgcggagg aagaacaatg agcagacttc gaatcctact ctcccgattg
     1861 cgcggtctgt ttcgaaaaag aaatctcgag caggagttgg ccgacgagat ccaatcgcat
     1921 ctcgagatgc agatggacga ctacgcgcgg cagggcatga atcccgaaga ggcgcggtat
     1981 gcagcgctgc gcaaattcgg cggtgtagat caggtcaaag aaaaataccg cgatcggcgt
     2041 ggcttgccgt tcgtagaaac gtttctgcgc gacctcggtt acggcgcacg catgttacgc
     2101 cgcagcccga ttgttaccac cgtcgcaata ctctcgctcg cactcggcat cggcgcgaac
     2161 acggctttat tcagcgtagt cgacgctgta ctcctgaaac ctttgccggt cgaggcgccg
     2221 gatcgcttgc tcgtcttcga gtggcaggcg ggtcgtgctt tcagaacaac gggaatgagc
     2281 ggcacgtcaa acgtgaccgt gccacctaac atgcgcgggc tttccttatt ccgatacgag
     2341 attgttgaaa gaatgcagca agcacgggtc gccggcggat cagaaacgcc gctcagcgat
     2401 ctctttgcgt ttggtccact cagcaaacta actgcaagag tcggtgatga ggcggagatc
     2461 attaaaggcc aggcggtgtc gggcaattat tttgcagcgc tcggactgca accgagtttg
     2521 ggccgcgcga tcacgccgga cgacgatcga tccggcgcat ct
//
LOCUS       DASWTX010001132         2665 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_275899, whole genome shotgun sequence.
ACCESSION   DASWTX010001132 DASWTX010000000
VERSION     DASWTX010001132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2665)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2665)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2665
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275899"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..524)
                     /locus_tag="VGD38_17260"
     CDS             complement(<1..524)
                     /locus_tag="VGD38_17260"
                     /inference="COORDINATES: protein motif:HMM:NF020076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT domain-containing protein"
                     /protein_id="HEY0729836.1"
                     /translation="MQVNLRYLCFALLAVALSFTSIRAQETEQADKTLAPYFLVHGDR
                     SVDQLPLKDTRVDVSVSGVIADVKVRQIYRNEGVRPINASYVFPASTRAAVYAMRMQL
                     GNEIIVAKIKEREQAKKEFEQAKEEGKSASLLEQQRPNVFSMSLANIMPQEQVEIELR
                     YTELLIPPDNGYEFV"
     gene            complement(695..>2665)
                     /locus_tag="VGD38_17265"
     CDS             complement(695..>2665)
                     /locus_tag="VGD38_17265"
                     /inference="COORDINATES: protein motif:HMM:NF014758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY0729837.1"
                     /translation="QEEQGSDRDVPQEIGAWIHVDQDGSVVVYTGKVEFGQNIRTSLA
                     QAVAEELHVPLLTIRLVMGDTDLTPFDMGTFGSRTTPTMAPQLRKAAAAAREMLIALA
                     AQQWQVAPDTVRIVDARFVNHDQSKSMTLADVAKGQKLVKTISPDVKTTPVDQWTLAG
                     KSIPKVDGRDYVTGRHKYTSDMRRDDMLYGAVVRPPKINMTFESEGTATAEVKKVQLV
                     RDGNFLGLATADQPFAQHVAKTMTTRWKTDPEPQPDNATLFDHFRKNAREGRGRPVGS
                     VADGFAAADKTLEQTYTVAYIAHAPLEPRAAIAEFVDNKLTVWTGTQRPFGVRGELAE
                     ALHIPASRIRVIVPDTGSGYGGKHSGECAIEAARLAIATKKPVKVVWTREEEFTWAYF
                     RPAGVIDVKTGVKNDGKITAWEFHNYNSGSSGIQLKYDIANQNIQFHSTKSPLRQGSY
                     RGLAATANHFAREVHMDELAALVKMDPVEFRLKNIKDERLRAVLQAAVDRFNSNRKPP
                     AHGFGVACGFEKGGYIATCAEVSIEQRTGKVKLERIVEAFECGAIVNPVHLENQVEGA
                     IVQAIGGALFESIQFANGSILNPRFKNYRLPRFSDVPPIEVVLVNRKDLPSAGAGETP
                     IVGLAPAVSNAIFAATGKRLRSLPLAPNGVKT"
BASE COUNT          522 a          815 c          736 g          592 t
ORIGIN      
        1 acgaattcgt aaccgttatc gggtgggata aggagctcgg tgtaacgcag ctcgatctcg
       61 acctgctcct gcggcatgat gttggccaaa ctcatcgaga aaacattcgg ccgctgctgc
      121 tccaaaagcg acgcgctctt cccttcctct ttcgcctgtt cgaattcttt cttcgcctgt
      181 tcgcgctctt taatcttggc gacgatgatc tcgttgccta attgcatgcg catcgcgtaa
      241 acggccgcgc gcgtcgaagc cgggaaaaca tacgacgcgt tgatcgggcg cacgccttcg
      301 ttacgataaa tctgccgaac cttgacgtcg gcaatcacac ctgaaactga aacatcgacc
      361 cgcgtgtctt tgagcggcag ttgatcgacg ctcctgtcgc cgtggaccag gaagtaggga
      421 gcgagcgtct tgtccgcctg ctcggtctcc tgcgcccgaa tagaagtgaa cgacaacgca
      481 actgccagca acgcaaaaca caggtaccgc aaattgactt gcatatgatc ctctccgcct
      541 tttatggcga ctcaacattc tgggcacttg gcccacttta aaacgcggag atactaagaa
      601 aaggaggcac ttgaacttac gttacagacc acaggtgggc accgtactgg ccacattcgg
      661 caaggcggga taggccggat ttttgcaaat tctgttacgt tttcacgccg tttggcgcga
      721 gcggaagcga acggaggcgc ttgcccgtcg cggcgaagat cgcgttgctg accgcgggag
      781 cgagaccgac gatcggagtc tcgccggcgc cggccgaagg aagatctttg cgattcacga
      841 gcacgacttc gatcggcggc acgtcgctga aacgcggcaa acgatagttc ttgaaacgcg
      901 gattgagaat gctgccgttc gcaaactgaa tcgactcgaa aagcgcaccg ccgatcgctt
      961 gcacgatcgc gccttcgacc tggttttcga gatggaccgg attgacgatc gcgccacact
     1021 caaacgcttc gacgatgcgt tcgagtttca ctttgcccgt acgctgttcg atcgagactt
     1081 cagcacacgt cgcgatgtaa ccgccttttt caaaaccaca cgcgacgccg aagccgtgcg
     1141 cgggcggttt tctgttcgaa ttgaaacggt ccaccgcggc ttgcaggacc gcgcgcaagc
     1201 gttcgtcctt gatgttcttc agacgaaact cgaccgggtc catcttcacg agcgccgcga
     1261 gctcatccat gtgtacttcg cgcgcgaagt gattcgccgt cgcggccagt ccgcgatacg
     1321 aaccctgtcg caacggcgac ttcgtgctgt gaaactgaat gttctgattt gcgatgtcgt
     1381 acttgagctg tatgcctgac gatccggagt tgtagttgtg aaactcccac gcggtgatct
     1441 tgccgtcgtt cttcacgccg gtcttcacgt cgatcacgcc cgcgggacgg aagtaggccc
     1501 aggtgaattc ttcttcgcgc gtccaaacaa ctttcaccgg tttcttcgtg gcgatcgcga
     1561 gccgcgcggc ttcgattgca cactcgccgc tgtgtttgcc gccgtaaccc gaaccggtgt
     1621 cgggcacgat cacgcggatg cggctcgcag ggatgtgcag cgcttcggcg agttcaccgc
     1681 gcacgccgaa cgggcgctgt gtgccggtcc agactgtcag cttgttatca acaaactcag
     1741 cgatcgccgc acgcggctcg agtggcgcgt gtgcgatgta agcgacggtg taagtttgtt
     1801 cgagagtttt atctgcggca gcgaagccgt cggcaaccga gccaaccgga cggccacgac
     1861 cctcgcgcgc gttcttccgg aagtgatcga acagtgtcgc gttgtccggc tgtggctcgg
     1921 gatcggtttt ccagcgcgtc gtcatcgtct tcgcgacgtg ttgcgcgaac ggctggtccg
     1981 ccgtggcgag accgagaaaa ttcccgtccc tcactagctg aactttcttg acctccgcag
     2041 tggccgtgcc ttcgctttca aacgtcatgt tgatcttcgg cggccgtacc accgcgccgt
     2101 ataacatatc gtcgcgccgc atgtcagacg tgtacttgtg acggccggtg acgtaatcgc
     2161 gcccgtcaac tttcggaatc gacttgcccg cgagtgtcca ttgatcgacc ggcgttgtct
     2221 tcacgtcagg cgagatcgtc ttgaccagct tttgtccttt cgcaacatcc gccagcgtca
     2281 tcgacttcga ctgatcgtga ttcacaaatc gcgcatcgac gatgcgcacg gtgtccggcg
     2341 ccacctgcca ttgctgcgcc gccaacgcaa tcaacatttc tcgagcagcc gccgctgctt
     2401 tgcgtaactg cggcgccatc gtcggcgtcg tgcggctgcc aaacgtgccc atgtcgaatg
     2461 gcgtcagatc ggtgtcaccc atgacgagtc gaatcgtcaa aagcggcacg tgcaactctt
     2521 ccgcaacggc ctgcgccagc gacgtgcgta tgttctgtcc aaactcaacc ttccccgtgt
     2581 aaacaacgac tgatccatcc tgatcgacat gtatccaagc gccaatctcc tgcggcacat
     2641 cacgatcaga tccctgttcc tcctg
//
LOCUS       DASWTX010001133         2484 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_233885, whole genome shotgun sequence.
ACCESSION   DASWTX010001133 DASWTX010000000
VERSION     DASWTX010001133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2484)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2484)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2484
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233885"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..484)
                     /locus_tag="VGD38_17270"
     CDS             complement(<1..484)
                     /locus_tag="VGD38_17270"
                     /inference="COORDINATES: protein motif:HMM:NF013927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0017000 - antibiotic biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HEY0729838.1"
                     /translation="MNTSLRSNPGGLLLIVVAVLFFAEANVVAAFQKAGNDPAKLART
                     VTIYRDTYGVPHVFGRTDASTVFGFAYAQAEDNFWRVEENFILALGRASELYGEKSLN
                     EDRLNRALEIPRLAREEYSRLDPKMRSLCDAFAAGFNYYVARHPEVRPRLLTKIEPWY
                     T"
     gene            682..>2484
                     /locus_tag="VGD38_17275"
     CDS             682..>2484
                     /locus_tag="VGD38_17275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729839.1"
                     /translation="MIRTLVLSFVLVITQAGPGVMMTLTAPLRQMRPFPTVLVKLGVA
                     PVPADFTPADSTAFATAITNSVGGDTITLTAGQTYTGPFTLKSGLTSTVTIRSSAHAS
                     LPANGQCVQSSDRSNMAIIVCGSSNNQKCFSTTGNDADNWRLTGLDMRQANGITNAEA
                     MVKFGNHSESVTANTPNNIEVDHCWIEATQAGTVRGLFLNGRNINVHDNYISGFRNPG
                     QECQAILYGGGPGPVTIDNNYMMALGEVFLSGGVTVGINAGDMTFTRNYLEAPQKYNP
                     WNPSVFDITDVQASTNLGCSLSSSGTTVTCSSHGVPDGATRVIRLTSGPQTGEKRTIS
                     AAPNANTLTLETAFSSNQSGVSATVYTPFTGHKNNFELKVLDGTANLIEGNVFDGTWG
                     MGQDGTGLVLTIRTEGGVMSSATIKNTTFQYNWFRRFQQFVRYISPDDFNGGAGVPME
                     DVVIRHNLIEPSYQFSGPGLQSGSPTSSIRVALFNGQDSTNHGTDVWFQHNTIYSAKN
                     LATAITFAGDSAGDWINYKFENNLFAVDTSFGGIFADGGATGTTALNNWCNGSGNYSA
                     VNNTFQNQNTSGYPTGTFSETTAANCGFNDVANLD"
BASE COUNT          565 a          740 c          679 g          500 t
ORIGIN      
        1 gtgtgtacca cggctcgatt ttcgtgagca gtcgcgggcg gacttcggga tggcgcgcga
       61 catagtagtt gaaaccagcg gcgaaggcgt cgcacagcga acgcatcttc ggatcgagcc
      121 gcgagtattc ttcgcgtgcc aaccgcggga tttcgagcgc gcggttgagt cgatcttcat
      181 tgagagactt ttcgccgtac aactcggaag cacggccgag tgcgagaatg aaattttctt
      241 caacgcgcca gaagttgtcc tccgcctgcg cgtacgcaaa cccgaacaca gtgctcgcgt
      301 ctgtgcggcc gaagacgtgc ggcacaccgt aagtgtcgcg atagatcgtg accgtgcgcg
      361 cgagcttcgc cggatcgttg ccagcttttt gaaaggctgc aactacgttc gcttcagcga
      421 agaacagaac tgcaacaacg atcagtaaaa gcccgcctgg gtttgagcgt agtgaagtgt
      481 tcatagtgtt tttggccagc agtcttgaag gattgtgttg cgccttcggt ggcggagatt
      541 ttatcagaca agagtcttgc tatttcaaat gagtgagcgt atcgtggtcg aactctcccc
      601 gacagactac ctcccaagac caacacttcg gtccgcccag ttgtacctcc ctaaaactct
      661 gcccgtattc aaggagtcag catgatcaga actctggtgc ttagttttgt actcgtaatc
      721 acgcaggccg ggccgggcgt catgatgacg ttgaccgcgc cgttgcgtca gatgcggcct
      781 tttccaaccg ttctcgttaa gctcggtgtt gcgccggtgc ccgcggattt tacccccgct
      841 gattcgacgg cgtttgcaac tgcaattacc aactcggtcg gcggcgacac gatcacactc
      901 acggccggtc aaacctacac tggtccattc acgttgaaga gtggtctcac ctcgactgtc
      961 accattcgtt catcggcaca cgcatcactg cctgccaacg gacagtgtgt gcagagcagc
     1021 gatcggtcaa acatggcaat catcgtttgc ggctcgtcca ataatcagaa gtgtttctcg
     1081 accaccggca acgacgccga caactggcgg ctcaccgggc tcgatatgcg acaggcaaac
     1141 ggcatcacca atgccgaggc catggttaaa ttcggcaatc attccgaatc ggtaaccgcg
     1201 aacacgccca acaacataga agtcgatcac tgctggatag aagcgacgca ggccgggaca
     1261 gtgcgcgggc tgttcctgaa cggccgcaat atcaacgttc acgacaatta catcagcggc
     1321 tttcgcaacc ccggacagga gtgccaggca attctctacg gcggcggtcc tggaccagtg
     1381 acgatcgata acaactacat gatggcgctc ggtgaagtgt ttttgagcgg cggcgtcacc
     1441 gtcggcatca acgccggcga tatgacgttt acgcgcaact atctcgaagc gccgcagaag
     1501 tacaatccgt ggaacccgtc tgtcttcgac atcaccgacg tgcaagcgtc gacaaatctc
     1561 ggatgctcgc tgagctcgag cggcaccacg gttacatgct cgagccacgg cgtgcctgac
     1621 ggcgcgaccc gcgtgattcg cctgacgtca ggtccgcaaa caggcgagaa acgcacgatc
     1681 tccgccgcgc caaacgcgaa cactctgaca ctcgaaacag ccttcagcag caatcaaagc
     1741 ggcgtctccg caaccgtgta cacgcctttc accggtcata aaaacaactt cgagttgaag
     1801 gtgctcgacg gaacggcaaa cctgatcgag ggaaacgttt ttgacggcac ttggggcatg
     1861 ggccaggacg gcacaggcct ggtgctgacc attcgcactg aaggcggagt gatgtccagc
     1921 gccaccatca agaacacgac ctttcagtac aactggttcc ggcgcttcca gcagttcgtg
     1981 cgctacatct ctccggacga tttcaacggc ggcgccggcg tcccaatgga ggacgtcgtt
     2041 attcgtcaca acctgatcga gccgtcgtac caattctccg ggcccggact gcaatcggga
     2101 agtccaacca gctcgattcg cgtcgccctg ttcaatgggc aagactcgac gaaccacgga
     2161 acggacgttt ggtttcagca caatacgatc tactcggcga aaaacctcgc gaccgcgatc
     2221 acatttgccg gtgactcggc cggcgactgg atcaactaca agttcgaaaa caacctgttt
     2281 gccgttgaca cctcgttcgg cggcatcttc gcggacggcg gcgcgaccgg caccaccgcg
     2341 ctgaacaact ggtgcaacgg ctccggcaat tacagcgcgg tcaacaacac gtttcagaat
     2401 cagaacacga gcggttatcc gaccggaacg ttttccgaaa cgaccgccgc gaactgtggt
     2461 ttcaacgacg tcgccaatct cgat
//
LOCUS       DASWTX010001134         1787 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_186888, whole genome shotgun sequence.
ACCESSION   DASWTX010001134 DASWTX010000000
VERSION     DASWTX010001134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1787
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186888"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1117)
                     /locus_tag="VGD38_17280"
     CDS             complement(<1..1117)
                     /locus_tag="VGD38_17280"
                     /inference="COORDINATES: protein motif:HMM:NF013079.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M17 family peptidase N-terminal
                     domain-containing protein"
                     /protein_id="HEY0729840.1"
                     /translation="MQVEANRGPIEELDVQALAVAVFKDEKPGDGFLKKLDELSGGLV
                     QSAIDAEEFSGKEGETAYFHLVGSGKTKFRRLMLIGVGDEKDYASPQVSQMSGTAVRS
                     LRSKNVKSIGVVPRVNGKDEETARRAAEGAFIALFDPDKYRTVEKEQKKVDRLVVSIE
                     GGDEAALDRGAKAGTVVGEAINFTRDLANEPGAYMTPSDMAERAREIANEFGLSIDVL
                     DEARMEQEGMDSLLSVSRGSEEPAKLIILKYTPAGSTGDEKELLSFVGKGVTFDSGGI
                     SLKPGENMELMKYDMTGAATVLGAMRAIAQLKPSIPILGVAPCTENLPSGKATKPGDV
                     VKAMTGKTIEIINTDAEGRLILADAIAYAKKLGATKVI"
     gene            complement(1169..1633)
                     /gene="smpB"
                     /locus_tag="VGD38_17285"
     CDS             complement(1169..1633)
                     /gene="smpB"
                     /locus_tag="VGD38_17285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003564285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEY0729841.1"
                     /translation="MPSKEEKVLAANRAAFHNYHISDKYEAGIALTGTEVKSAMDGRV
                     QLKEAYVSVRDGEAWLFNAHISPYSHGNRENHDPLRTRKLLLHKREISKLDEATAKQG
                     MTLVPTQLYLKNRRIKIEVGVARGKKMYDKREAELKRTVERETRAQLKERNR"
BASE COUNT          330 a          552 c          464 g          441 t
ORIGIN      
        1 cgatgacttt ggtcgcgccg agtttcttcg cgtaggcgat cgcgtcggca agaatcaatc
       61 ttccttcggc gtcggtgttg atgatctcga tcgtcttgcc cgtcatcgcc ttcacgacgt
      121 cgcccggttt ggtcgccttg cccgacggca ggttctcggt acacggagca acacccaaaa
      181 tcggaatcga cggcttgagc tgcgcgattg cgcgcatcgc acccaaaacc gtggcggcgc
      241 ccgtcatgtc gtacttcatc aactccatgt tctcgccagg cttcagcgag atgccgccgg
      301 aatcaaacgt cacgcctttg ccgacaaacg acagcagctc tttttcatcg ccggtggaac
      361 ctgcaggcgt gtacttcaga atgatcagtt tcgcgggttc ttccgagccg cgcgagacac
      421 tgagcaacga gtccatgcct tcctgttcca tgcgcgcttc gtcgagcacg tcgatgctca
      481 gaccaaactc gttcgcgatt tcgcgggcgc gttcagccat atcggaaggc gtcatgtaag
      541 cgccgggttc gtttgcgagg tcgcgcgtga aattgatcgc ttcgccgacg acggtgcccg
      601 ctttcgcacc ccggtcgagc gcggcttcgt ctccgccttc aatcgacacc acgagccgat
      661 cgaccttctt ctgttccttc tcaacggtcc gatatttatc gggatcgaac agcgcgataa
      721 atgctccctc ggcggcgcgg cgagcggtct cttcatcctt cccgttcact cgcggcacca
      781 cgccgatcga cttcacgttc ttgctgcgca acgagcgcac cgccgttccg ctcatctgcg
      841 aaacctgcgg actggcgtaa tccttttcgt cgccgacgcc gatcagcatc aagcgccgaa
      901 actttgtctt gccgctgccg acaagatgga aataggcggt ctcgccttcc ttgccggaaa
      961 actcttcggc atcaatggcg gactgaacga gcccgccgga aagttcatcg agcttcttca
     1021 ggaacccgtc gccgggcttc tcatccttga acacggcaac cgcgagggct tgaacgtcaa
     1081 gctcttcgat cggacctcgg ttggcttcaa cttgcatgtg agtgggttct cctgcgatat
     1141 gaaatgcgga aagcttaatt tttaatttct atcggttgcg ctcctttagt tgcgctcgtg
     1201 tttctcgttc caccgttcgc ttcaactcgg cttcgcgctt gtcgtacatc ttcttgccgc
     1261 gagcaacgcc aacttctatt ttgatccggc gattcttgag gtaaagctgc gtcgggacga
     1321 gagtcatgcc ctgcttggcc gttgcttcgt cgagtttcga aatctcacgc ttgtgaagca
     1381 acaacttgcg ggttctcagc ggatcgtggt tctcacgatt gccatgagaa tacggcgaaa
     1441 tgtgggcatt gaacaaccac gcctcgccat ctcgcacgga aacgtaagct tctttcaact
     1501 gtacgcggcc atccatcgca ctcttcactt ccgttccggt caaggcgatt ccggcctcgt
     1561 acttgtcgga gatgtggtag ttgtgaaacg cagcgcgatt cgccgccagc actttttctt
     1621 ctttactggg caacgttgtt cagcttcaaa tcgagtacat cgtgtcgcgt gatgatgccg
     1681 acgatgcggc catactcctc gaccaatacc gcgggactgg tctgcaatcg ccgcgtcact
     1741 tcattcgaac tggcatcgac gtcgacactc ggaaaacccg tttccat
//
LOCUS       DASWTX010001135         2468 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_125462, whole genome shotgun sequence.
ACCESSION   DASWTX010001135 DASWTX010000000
VERSION     DASWTX010001135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2468
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125462"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..399)
                     /locus_tag="VGD38_17290"
     CDS             complement(<1..399)
                     /locus_tag="VGD38_17290"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY0729842.1"
                     /translation="MISIILVLMLTQAQTPLQAMVQTEHAFARMAAEKNTRDAFLACI
                     ADDGLLFRPGAVNGKKWMLDHPTPPSDKRPLLAWQPVLGMVAASGDFGYTTGPWQSKP
                     DINDAKPSAYGQFITVWKKQPDGSWKFAVDL"
     gene            complement(396..1904)
                     /locus_tag="VGD38_17295"
     CDS             complement(396..1904)
                     /locus_tag="VGD38_17295"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HEY0729843.1"
                     /translation="MSSLSLKGIHKSFGPTVALDGVDLELRPGEVHALIGENGAGKST
                     LMNVIAGSLKPDDGHMHLDGQPYSPTSPLDARTHGIALIHQELSLCPHLSVAENVLMG
                     IESSRFGWLDRDKLRERTNEVLRTFHHADIRPEKRVGDLSVAARQIVEISRALAARAR
                     IILMDEPTSSLQRDDVANLFTLIRKLSSEGISVIYISHFLEEVRQIADRFTVLRDGRS
                     VATGEISNTTDDELIAKMVGRAQQNLFPDRKSTNTTHETILEVRNLAAPPLLKDASFD
                     LRRGEILGIAGLMGSGRTPLLRAIFGLEPPESGTITVNKSALPGRRATPAMRLIEGLG
                     YLSEDRKGDGLTLNQSLSDNVTITKFDACSRWGWLNLPLQRWQAAKFVDALKIKAQNV
                     QQPVGSLSGGNQQKVIVARLLHQDADVLLLDEPTRGIDIGSKAQVYETIAACAAQNKA
                     VLMVSSYLPELFGMCDRLAVMSRGRLSEVRPIDRWTPESVLAEAVGSRDKDE"
     gene            complement(1901..>2468)
                     /locus_tag="VGD38_17300"
     CDS             complement(1901..>2468)
                     /locus_tag="VGD38_17300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729844.1"
                     /translation="GITFRLAPGNANAVVPRGQTIQLPNGVRRLYILAAAVNDDQKVT
                     FRIGNESKGLTIQRWNGFIGQWDNRQWKRTEVQLAPRTPPPDIPPDIAAVLQRSRTRV
                     DQYGEMTGITPGFIKRAPLAWFASHHHTASGTNEAYAYSYLFAYEIDVPANATTLTLP
                     NNDRVRILAITGSNERHRVTPARDLYGL"
BASE COUNT          443 a          682 c          774 g          569 t
ORIGIN      
        1 gagatcgacc gcaaacttcc acgaaccgtc cggctgcttc ttccagacgg ttatgaactg
       61 gccataggcc gacggctttg cgtcgttgat gtccggcttt gattgccatg gtccagtggt
      121 gtaaccgaaa tcgccggacg cggccaccat acccaaaacc ggttgccacg cgagcagcgg
      181 gcgtttgtcg gaaggcggcg tcggatggtc caacatccac ttcttgccgt tcacggcgcc
      241 gggacgaaac agcaatccgt cgtcggcgat gcaggccagg aatgcatcgc gcgtattctt
      301 ctccgcagcc atgcgcgcga acgcgtgttc cgtttggacc atcgcctgca acggcgtttg
      361 cgcctgcgtc agcatcagca cgagaattat gcttatcatt cgtctttgtc cctgcttcct
      421 acggcctcgg ctaacacgct ttccggtgtc cagcgatcga tcggccgcac ctccgaaagc
      481 cggccgcgac tcatcactgc cagacgatca cacatgccaa acagttcagg caagtaggaa
      541 ctgaccatca gcaccgcttt gttctgcgcc gcgcaggcgg caatcgtttc gtaaacctgc
      601 gctttgctgc cgatgtcgat gccgcgcgtc ggttcgtcga gcagcagcac gtcggcgtcc
      661 tgatgaagca ggcgcgcaac gatcaccttt tgctggttac cgcccgaaag cgatccgacc
      721 ggttgctgca cgttctgtgc ttttattttc agtgcgtcca cgaacttcgc tgcctgccag
      781 cgttgcaggg gaagattgag ccagccccaa cgcgagcacg cgtcgaattt tgtaatagtc
      841 acgttgtctg acaacgattg gttcaacgtc aaaccgtcgc ctttgcgatc ttcgctgaga
      901 tagccgagac cctcgattag acgcatagcg ggcgtggcgc gtctgcccgg tagcgcactc
      961 ttgttgaccg tgatcgttcc gctttcgggt ggttcgagac cgaagatcgc gcgcaacagc
     1021 ggcgtgcggc ccgagcccat caggccggcg atgccgagta tttcgccgcg acgcagatcg
     1081 aagctcgcgt cttttagtaa cggcggcgcg gcgaggtttc gcacttcgag aatcgtttcg
     1141 tgtgttgtgt tggtggattt gcgatcggga aacaggttct gttgtgcacg cccaaccatt
     1201 tttgcgatca gttcgtcgtc cgtcgtgttt gagatctcgc ccgttgcgac gctgcggccg
     1261 tcgcgtaaca cggtgaatcg atccgcgatc tggcgcactt cttcgaggaa gtggctgatg
     1321 tagatgacgg agatgccttc ggagctgagc ttgcggatca gcgtgaagag gtttgcgacg
     1381 tcgtcgcgtt gcagactgct ggtgggttcg tccatcagga tgatgcgcgc gcgtgcggcg
     1441 agggcgcgtg agatctcgac gatctgacgg gcggcgactg acagatcgcc gacgcgtttt
     1501 tccggacgga tgtcagcgtg atgaaacgtg cgcagcactt cgtttgtgcg ttctcgcagt
     1561 ttgtcgcggt cgagccagcc gaagcgcgag gattcgattc ccatgagcac gttttcggcc
     1621 acggatagat gcggacataa agacaattcc tggtggatca gcgcgatgcc gtgtgtgcgt
     1681 gcgtcgagtg gactcgttgg tgagtacggt tgtccgtcga ggtgcatgtg gccgtcgtct
     1741 ggtttcaacg agccggcgat gacgttcatc aacgtgcttt tgccggcgcc gttttcgccg
     1801 atcagcgcgt ggacttcgcc cgggcgtagt tcgagatcca cgccgtcgag cgcgacggtt
     1861 ggaccaaacg atttgtggat gccttttaaa gaaagagaac tcatagtccg taaagatcgc
     1921 gtgcgggtgt cactcgatgc cgttcgttcg agcccgtgat cgcgagaatg cgaacccggt
     1981 cgttgttcgg cagcgtcaac gtcgtcgcat tagcgggcac gtcgatctcg taagcaaaca
     2041 ggtacgagta agcatacgcc tcattcgtgc cggatgcagt gtggtggtgg gatgcgaacc
     2101 atgcaagcgg ggcgcgtttg atgaaaccgg gcgtgatgcc ggtcatctcg ccgtattgat
     2161 cgacgcgcgt gcgcgagcgt tgcaggactg cggcgatgtc gggtggtatg tcgggtggtg
     2221 gcgtgcgcgg cgcgagttga acttcggttc gtttccattg gcggttgtcc cattggccga
     2281 tgaaaccgtt ccagcgctgg attgtcaggc cttttgattc gttgccgatg cgaaacgtga
     2341 ctttctgatc gtcgttgacg gcggcggcaa gaatataaag acgtcgcact ccgtttggga
     2401 gttgaatagt ttgcccgcgc gggaccacgg cgtttgcgtt tccaggcgcc aagcgaaaag
     2461 ttattcca
//
LOCUS       DASWTX010001136         2320 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_426242, whole genome shotgun sequence.
ACCESSION   DASWTX010001136 DASWTX010000000
VERSION     DASWTX010001136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2320
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_426242"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..182
                     /locus_tag="VGD38_17305"
     CDS             <1..182
                     /locus_tag="VGD38_17305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729845.1"
                     /translation="EGLRGTPGIAGRVFSTISDINVTLISQGASSINFTFAIEETHVA
                     EAVQRLHDAFFPNNR"
     gene            179..1180
                     /locus_tag="VGD38_17310"
     CDS             179..1180
                     /locus_tag="VGD38_17310"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY0729846.1"
                     /translation="MNPFQLTRQLIDIPSLTGDEKAVGEFLATHLAALGYQVERQAIT
                     ADRFNVIATTGESPRIVLSTHMDTVPPFIASSEDGEYIYGRGSCDAKGIIAAQIFAAE
                     RLRQSGMNHVGLLFTVDEELSSLGAQAANNHPLAGECRFLINGEPTDNRLATGTKGAL
                     RLIITTAGRAAHSAYPEAGESAIEKLLDVLEDIRAIAWPGHSFFGDTTNNIGVLNGGT
                     RPNVIPDHARAELQIRLATDIEQIKPLVEKAVAGRAQVEYASAHNPVRLFEVEGFDDC
                     VVRFTTDVPYLSNWGKALLIGPGSILDAHTEHERIAKHELERAVELYVALAGKLNAL"
     gene            1177..1881
                     /locus_tag="VGD38_17315"
     CDS             1177..1881
                     /locus_tag="VGD38_17315"
                     /inference="COORDINATES: protein motif:HMM:NF017024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate reductase C-terminal
                     domain-containing protein"
                     /protein_id="HEY0729847.1"
                     /translation="MKIALIGNGAMGQLVAAEARAAGDEVGAVVTSKDRDLKPDELKE
                     KIRGHEVDVVIDFSVGEAVLRNIEACALAGVPLVEGTTGWKAQEDAAKQIVREHSGAL
                     VYGANFSIGVNLFYRIVDRAAALFASVDGYAPFIEEAHHMRKRDAPSGTALQLRDLMA
                     QHLEAEIPTASTRAGYIPGTHRVGFDSEADQILLVHTARSRKGFASGALLAAHWIAGR
                     TGVYQFSEVIDELVKL"
     gene            1903..>2320
                     /locus_tag="VGD38_17320"
     CDS             1903..>2320
                     /locus_tag="VGD38_17320"
                     /inference="COORDINATES: protein motif:HMM:NF012904.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HEY0729848.1"
                     /translation="MTLQVDWLRGCATALVTPFTSEGAVDDRRLRELIEYQISGGVKV
                     LVPCGTTGESATMSDAENELVIRTTIELARGRAKVIAGTGSNCTANAIQKSRAARSLG
                     ADAILCVAPYYNKPTQEGLYAHFRAIAEAVNSLPVVI"
BASE COUNT          515 a          645 c          690 g          470 t
ORIGIN      
        1 gtgaaggttt gcgcggcacg cccggaatcg ccggacgcgt tttcagcacg atcagcgaca
       61 tcaacgtcac gctcatttca caaggcgcct ccagcatcaa ctttactttc gcgatcgaag
      121 agacgcacgt tgccgaagca gtccaaagat tgcacgacgc gttcttcccg aataacagat
      181 gaatccgttt caacttactc gccaactgat cgacatcccg tcgctaaccg gcgacgagaa
      241 agccgttggt gagtttctcg cgacgcatct cgcagctctt ggttaccagg tcgaacgaca
      301 agccatcacc gcagaccgct tcaatgtaat tgccaccacc ggggaatcac cgcgcatcgt
      361 gttgtcaact cacatggaca cggtgccgcc gttcatcgcg tcgagcgaag acggcgaata
      421 catctacggc cgcggctcgt gtgacgccaa aggcatcatc gccgcgcaga tctttgctgc
      481 cgaacggctg cgccaaagcg gcatgaatca cgtcggtttg cttttcaccg ttgacgaaga
      541 actgagcagt ctcggcgcgc aggcagcgaa taatcatccg ctcgccggcg agtgtcgttt
      601 cctgatcaac ggcgaaccga ctgacaatcg actggccacg ggaacgaaag gcgcgttgcg
      661 gttgatcatc acgactgcag gacgcgccgc gcattcggcg tatccggaag cgggcgagtc
      721 agcaatcgaa aagttgctcg acgttctgga agacattcgc gcaatcgcat ggcccggcca
      781 tagtttcttc ggtgatacga ccaacaacat cggcgtgctg aacggcggca cgcggccgaa
      841 cgtgattccc gatcatgctc gtgcggaatt gcaaattcgg ctcgcgacgg atatagagca
      901 aatcaagccg ctcgtcgaaa aggcggtggc cggacgggcg caggtggaat atgcgtcggc
      961 gcacaatccg gtgcggttgt ttgaagtgga gggttttgat gattgcgtgg tgcggtttac
     1021 gacggatgtg ccgtaccttt cgaactgggg gaaagcgtta ctgatcgggc cgggttcgat
     1081 actcgacgcg cacacagagc acgaaaggat tgccaaacac gagttggaac gggcagttga
     1141 gctgtacgtg gcgttggctg ggaaactaaa cgcattatga agatcgcgct tatcggaaac
     1201 ggtgcaatgg gccagctcgt tgccgcagag gcgagagccg ctggtgacga ggttggcgct
     1261 gtggtgacct ctaaggatag ggatttaaaa ccggatgaac tgaaagaaaa gatcaggggt
     1321 cacgaggtcg acgtcgtgat cgatttttca gttggtgaag ctgtgctcag aaatatcgag
     1381 gcgtgtgcgc tcgctggggt tccgctggtt gaaggtacga cgggttggaa ggcgcaggaa
     1441 gacgcagcga aacagatcgt gcgcgagcac tcgggcgcgc tcgtttatgg cgcgaatttt
     1501 tccatcggcg tgaatctttt ttatcgcatc gtcgatcgcg ccgcggcgct ctttgcttcc
     1561 gtcgacggtt acgccccttt catcgaagaa gcgcatcaca tgcgcaaacg cgacgcgccc
     1621 tcgggcacgg cgctacagtt gcgcgacttg atggcccaac atctcgaagc ggagattccc
     1681 accgcttcaa cgcgcgcggg ttacatcccc ggcacgcacc gcgtcggttt cgactccgaa
     1741 gcagatcaga tcctgctcgt acacaccgcg cgatcgagaa aaggatttgc atccggagca
     1801 ttactggccg cgcattggat tgccggccgc accggcgttt accagttttc agaagtgatt
     1861 gatgaattag tgaaactcta aattccttac cttggaggca ccatgacact acaggttgat
     1921 tggcttcgtg gctgtgctac cgcactcgtt actcccttta ccagcgaggg cgctgttgac
     1981 gacagacgtt tacgcgagct tatcgagtat caaataagcg gcggcgtgaa ggtgcttgtt
     2041 ccgtgcggaa caacaggcga aagcgcgacg atgtctgacg cggaaaacga actcgtgatc
     2101 cgcaccacga tcgagctcgc gcgcggccgt gcaaaagtga tcgccggtac aggcagcaac
     2161 tgcacggcga acgcgattca gaaatcgcgc gcggcgcggt cgctcggcgc cgacgcaatc
     2221 ctgtgcgtcg ctccttatta caacaagccg acgcaggaag gtctctacgc acatttccgc
     2281 gcgattgccg aagcggtcaa cagtctcccg gttgtcatct
//
LOCUS       DASWTX010001137         5041 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_143778, whole genome shotgun sequence.
ACCESSION   DASWTX010001137 DASWTX010000000
VERSION     DASWTX010001137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5041
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143778"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..240)
                     /locus_tag="VGD38_17325"
     CDS             complement(<1..240)
                     /locus_tag="VGD38_17325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729849.1"
                     /translation="MKSILFGTLLLLSLTARAGAQEPAAPTATPAPQSAAQSAGSSAE
                     KYFTDVILVNQDGEKMRFYSDLIKGKTVVINSFFAT"
     gene            complement(276..2111)
                     /locus_tag="VGD38_17330"
     CDS             complement(276..2111)
                     /locus_tag="VGD38_17330"
                     /inference="COORDINATES: protein motif:HMM:NF044870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729850.1"
                     /translation="MTHKILAILLLLAAGQFTHVFAQQVFTEQGVSIDFSVASKPTAG
                     EEATVRFKITSANDGVPLSNLRPVAWIDRRDSAQKPATRECRDKVQQFLQSSFTKRPT
                     LDLNAYFVLALNNEANISVIDPISGFGGSKLYTLIPLKTPGEDWVITENNKRVYVSMP
                     QSNQIAVVDVPTWSVVANIDAGVKPTRVALQHDQRYLWVGTTDGVTVIDTVTAKQVAQ
                     IKTGAGPHELVFNDDDSIAFVTNRAAGTVMLIDIRKLAAVSELKVGSKPTALVFSSLS
                     KTAYVADEDDGTIFAIGGPKREVIARIQTAPGTRTLSITPDGRYGLAINTGKNLVYIV
                     DLSSNRVVHTVPVDPGSDQINFTKNFAYVRSANTEFVTLINISDRAKEAPVTRVPAGQ
                     KAPGESPSKSIASAMVPAPEDGAMLVANPADKMIYYYSEGMAAPMGSFQNYKRDPRAL
                     LVLDNSLRETERGVYTSTVRLMAPGHYDVVFLLDAPRLVNCFEMSVAENPAMPKKVET
                     AVKFEPLVKETLANAGERFTLRFKVVDSNSGNAKPDVKDITVLAFLAPGIWQQREVAK
                     PATDGVYEMSFVPPQPGVYYIFFQSPTLGIQFNQTMPLTLQVVKP"
     gene            complement(2116..2457)
                     /locus_tag="VGD38_17335"
     CDS             complement(2116..2457)
                     /locus_tag="VGD38_17335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729851.1"
                     /translation="MPNRKFRFEKRPAIPNVPPRNFEGAVPSSEFRLLQPNESFSYEP
                     HVIIFSGESLDGLYLQLKAATWIWEVEKAEQLRQRWAPFGELFYQDVTVEPFQLTLNK
                     SGAATPRCNTQ"
     gene            complement(2776..4242)
                     /locus_tag="VGD38_17340"
     CDS             complement(2776..4242)
                     /locus_tag="VGD38_17340"
                     /inference="COORDINATES: protein motif:HMM:NF037982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HEY0729852.1"
                     /translation="MTQAPEARSGLDPWRIAELPPAPRPKGLGWFSALGPGVIALGVS
                     IGSGEFLLGPAAFVKYGLAMLWVVGVAALLQTLLNVELMRYTLATGEPAVTGFMRTRP
                     HSTFWAWLYAILYFLQMGWPGWAGAAAGAVFFLFAKRLPVAAEGGTVYAIGVGLFLLC
                     ALILTFGRRIERTLEFLNWIMVSVILGGLGILAVLFVPLPTWLAAVAGFAGYDVQRGS
                     FNFVPPGADFFLLGAFAAYCGGGGVANLTLTNWARDKGYGMSSIVGFIPAAVGGKKVA
                     LAHSGAVFKPDAASLANWRGWWHIVRVDQWGVYFLGAILGMVLPAVLYVTFVPSGSDI
                     RGLGIAAALAESVASQKGAIFGGVIAVLGVWLLFKTQLDILEAMTRAITDILWTGSSR
                     IRAWRGGDVRVVYYTVLVAITAWGIIALRLTQPIVLLALSANMAGIVFIISSIHLLYV
                     NTRLLPVELRPPMWRRVALVALAIFYGLFLFMWLWTLF"
     gene            4328..4795
                     /locus_tag="VGD38_17345"
     CDS             4328..4795
                     /locus_tag="VGD38_17345"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY0729853.1"
                     /translation="MSEIRIASSADAEQITAVINAAFRIAEGFFIDGNRITLDEVQGL
                     LTKGAFLVAPDENGLRGCVYIEPRGERAYLGLLSVDPSRQQSGLGSRLMSAGEEYCRE
                     RGARFMDILIVNLRTDLPAFYAHRGYVENGTTPFPPDVPTKQPCHFINMSKPL"
     gene            4808..>5041
                     /locus_tag="VGD38_17350"
     CDS             4808..>5041
                     /locus_tag="VGD38_17350"
                     /inference="COORDINATES: protein motif:HMM:NF045432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729854.1"
                     /translation="MAKKDTAEVLTIDGHDVRVSNPDKLYFSKQIKLTKLELVRYYLS
                     VAPGALAGIRDRPIVLKRYVNGAEGEAFYQKRAP"
BASE COUNT         1092 a         1437 c         1474 g         1038 t
ORIGIN      
        1 agtcgcaaag aaagaattga tgacgacggt tttccccttt attagatcgc tgtagaaacg
       61 catcttctcg ccgtcctggt taacgaggat gacgtcggtg aagtatttct cagcggagga
      121 gcctgcgctt tgcgccgcgc tttgaggcgc tggagtcgca gttggagcag ccggttcctg
      181 cgcgccggca cgtgcggtta aagacagcag cagtaaggtt ccgaagagga tcgatttcat
      241 tgggttctcc gaagcaggac gacggtcctg cctgctcatg gtttcaccac ctggagagtt
      301 agtggcattg tttgattgaa ctgaattccc agcgtgggac tctggaagaa gatatagtac
      361 acgcccggtt gcggcggcac aaaactcatt tcataaacgc cgtcagtcgc gggcttcgct
      421 acttcccgtt gctgccagat gcccggcgcg agaaacgcga gcacggtgat gtccttcacg
      481 tcaggctttg cgttgccgga gtttgaatcg acgaccttga agcggagggt gaaacgttcg
      541 ccggcgttcg cgagcgtctc cttgacgagt ggttcgaact tgaccgccgt ttccactttc
      601 ttcggcatcg ccggattctc ggcgaccgac atttcgaaac agttaacgag acgcggcgcg
      661 tccagcagaa acacgacgtc gtagtgtccc ggcgccatca agcgcacggt gctcgtgtaa
      721 acgccgcgct cggtttcgcg caaactgtta tcgaggacga gcagcgcacg cggatcgcgt
      781 ttgtagtttt gaaaactgcc catcggcgcg gccatgcctt cggagtagta gtagatcatc
      841 ttgtccgcgg gattcgcgac gagcatggcg ccgtcttccg gcgccggaac cattgctgaa
      901 gcgatcgact tcgacggcga ttcacccggc gctttttgtc ccgcgggaac acgcgtcacg
      961 ggcgcctctt tcgcccggtc cgagatgttg atcagcgtca cgaattcggt attggctgaa
     1021 cgaacgtatg cgaaattctt cgtgaagttg atctgatccg agccgggatc gaccggcacc
     1081 gtgtggacca cgcgattaga cgagagatcg acaatgtaga cgaggttctt gcctgtgttg
     1141 atggcgagac cgtaacggcc atcgggcgtg atgctgagcg tgcgtgtgcc gggtgcagtt
     1201 tgaatgcgcg cgatgacctc gcgcttcgga ccgccaatcg cgaagatcgt gccgtcgtct
     1261 tcgtcggcga cgtacgcggt tttgctcaac gaagaaaaga cgagcgccgt gggttttgaa
     1321 ccgaccttaa gctcactcac cgccgccagc ttacgaatat caatcagcat cacagtaccg
     1381 gctgctctgt tggtaacgaa ggcaatgctg tcgtcgtcgt tgaacacgag ctcgtgcgga
     1441 ccggcgccgg tttttatttg tgcgacctgc ttggccgtga ctgtgtcgat cactgtgacg
     1501 ccatcggtgg ttccgaccca caagtatctt tgatcgtgct ggagcgcgac gcgcgtcggc
     1561 ttcacaccgg cgtcgatatt cgcgaccacg ctccaggtcg gcacgtcgac gaccgcgatc
     1621 tgattgctct gcggcatcga cacgtagacg cgtttattgt tttcggtgat gacccagtct
     1681 tcaccgggag tcttcagcgg aatgagcgtg tagagcttgc tgccgccaaa gccggagatc
     1741 ggatcgatga ccgagatgtt tgcttcgtta ttcaacgcca gcacgaagta ggcgttgaga
     1801 tcgagcgtgg gccgcttggt aaaactcgat tgcagaaact gctgaacttt gtcgcggcac
     1861 tcgcgcgtcg ccggcttttg cgccgagtcg cgccgatcga tccaggcgac cggccgcaga
     1921 ttgctcagtg gcacgccatc gttagcgctc gtgatcttga aacgcacggt cgcttcttca
     1981 ccggcggtcg gtttcgacgc cacgctgaaa tcaatagaga cgccctgctc ggtgaagacc
     2041 tgttgcgcaa aaacgtgagt gaactgcccg gccgcgagca ggagaaggat ggcaagaatt
     2101 ttgtgagtca cttgattatt gagtattgca gcggggagtg gctgctcctg atttattgag
     2161 agtcaactga aatggctcaa ccgtcacatc ctgataaaag agttcaccga aaggcgccca
     2221 tctttggcga agctgttccg ctttttcgac ttcccaaatc cacgttgccg ctttgagttg
     2281 caggtataaa ccgtcgagcg attcgcccga aaagattata acgtgcggtt cataagaaaa
     2341 agactcattg ggctggagga ggcggaactc gcttgaagga accgctccct cgaaattgcg
     2401 tggcggcaca ttagggatcg ccgggcgttt ctcaaaacgg aattttctgt ttggcatgtc
     2461 ggccacactc gtgcccaaac gcgaatcaaa agacgccggc gagtaccggt aaatgatcaa
     2521 aggcctgcgg ctgacattag taatgctcag acggaacgtt agcgtcgagt gtattgcttg
     2581 ccggttctcg tctatgacct gaaggcacgt gtgctcgtac ctcatcgcct cgccggatac
     2641 tcttacgagc tctgttttgt catcacgttc ctgagcgcac aatgcaggcg ctccgaaact
     2701 ggcgcacgcg atcagtaatg cgacgagctt acacttcacg gcgagataat cattctcacg
     2761 cgtggacgct gtcaatcaaa aaagtgtcca caaccacatg aacaaaaaca gtccgtaaaa
     2821 aatggccaac gcaacgagcg cgacacgccg ccacatcggc ggacgcaact caaccggaag
     2881 cagccgcgtg ttgacgtaga gcaaatgaat cgagctgatg atgaagacga tgccggccat
     2941 gttggcgctg agtgcgagca gaacgatcgg ttgcgttaga cgcagcgcga tgatgcccca
     3001 cgccgtgatc gctacgagca cggtgtagta aaccacgcgc acgtcgccgc cgcgccacgc
     3061 gcgaatccgg ctgctgcccg tccacagaat gtcggtgatc gcgcgcgtca tcgcttcgag
     3121 aatgtccaac tgcgttttaa atagaagcca cacgccgaga accgcgatca caccgccgaa
     3181 gatcgcgccc ttttgcgaag ccactgactc cgccaacgcc gcggcgattc cgagtccgcg
     3241 aatgtcgctg cccgaaggaa cgaacgtaac gtaaagcacc gcgggcaaga ccatgcccag
     3301 aatcgcgccc aggaaataaa caccccactg atcgacgcgc acgatgtgcc accaaccgcg
     3361 ccagttcgcg agactggccg catccggttt gaagaccgcg cccgagtgtg cgagtgcgac
     3421 tttcttcccg cccaccgccg cgggaataaa accaacgatg ctgctcatgc cgtagccctt
     3481 gtctcgcgcc caattggtta acgtgagatt cgcgacgcca ccgccgccgc agtaagccgc
     3541 aaacgcgccg agcaaaaaga aatcggcgcc gggcggaaca aaattaaatg agccacgctg
     3601 cacgtcgtaa ccggcgaagc ctgcaacggc tgcgagccat gttggtaaag gaacgaagag
     3661 cacagccaga atgcccaagc ctccgaggat gacgctgacc atgatccagt tgagaaactc
     3721 gagtgttcgt tcgattcgtc tgccgaacgt caggatcagc gcgcataaga gaaagagccc
     3781 gacgccgatc gcgtagacgg ttccgccttc cgcagcgact ggcaaccgct tcgcaaacag
     3841 gaaaaagacc gcgcccgcgg cggcgccggc ccaacccggc caacccatct gcagaaagta
     3901 gaggatcgcg tagagccacg cccagaacgt tgagtgtggc cgcgtgcgca tgaatccggt
     3961 gaccgctggt tcgccggtcg ccagtgtgta gcgcatcagc tcgacgttca ataacgtctg
     4021 caacagcgcc gcgaccccga cgacccacaa catcgcgagg ccgtacttca caaacgccgc
     4081 cgggccgagc agaaactcgc cgctgccgat cgaaacgccg agtgcgatca cgccaggacc
     4141 gagcgcactg aaccagccga gacctttcgg gcgtggcgcg ggcggaagtt cggcgatgcg
     4201 ccacggatcg agtccggagc gggcttcggg tgcttgcgtc atgagttctt cacttgatcg
     4261 agtttgaagt ctactccaga attgcggcgc gcattctatc attggactgg tccacttcaa
     4321 cttggtcatg agtgaaattc gcatcgccag ctccgccgac gcggagcaga tcaccgccgt
     4381 aatcaacgcc gcttttcgca ttgccgaggg gttctttatc gacggcaacc gcatcacgct
     4441 cgacgaggtt cagggtttac tcacgaaggg cgcgtttttg gtcgctccgg atgagaatgg
     4501 tttgcgaggt tgtgtttaca tcgagccgcg tggtgaacgt gcttatcttg gattgttgtc
     4561 ggtcgatccg tcgcggcagc aaagcgggtt gggctcgcgg ttgatgagtg cgggtgaaga
     4621 gtattgccgt gagcgtggcg cgcgttttat ggacatcctg attgttaatc tgcgcactga
     4681 cttgccggcg ttttacgcgc accgcgggta tgttgaaaac ggtacgacgc cctttccgcc
     4741 ggacgtcccg acaaagcagc cgtgccattt catcaacatg tcaaagccac tataatccgt
     4801 tcattccgtg gccaagaaag acacagcaga ggtcctcacg attgacgggc acgacgtgcg
     4861 cgtcagcaat ccggacaagc tctacttctc gaaacagatc aagctcacga agctcgagct
     4921 ggtgcgttat tacctttcag ttgcaccggg cgcgctcgcg gggattcgcg atcggccgat
     4981 cgtgttgaag cgctacgtca acggcgcgga aggtgaagcg ttttatcaga agcgtgcgcc
     5041 t
//
LOCUS       DASWTX010001138         2087 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_13627, whole genome shotgun sequence.
ACCESSION   DASWTX010001138 DASWTX010000000
VERSION     DASWTX010001138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13627"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..817)
                     /locus_tag="VGD38_17355"
     CDS             complement(<1..817)
                     /locus_tag="VGD38_17355"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0729855.1"
                     /translation="MLNSRRIIFVLGNLELGGAERQALILARYLSEHEQAHVEVWGFN
                     KSGPVAEICSQHKLPTRVLPYPFSGNRSNRVRALVTVSRSLREAEPDLILPYTLGPNV
                     VCGLIWKRTGASSCVWNQRDEGIGALDSYFAPQAARATPRFISNCEAGAQFLIEKLGV
                     DATKVTVIPNGIETVAAEMDRSAWRERLAVDERTFVACMVANLHLNKDHATLLRAWRK
                     VVNEFSGRSALLVLAGRHDGAYESLASLASELQLGDNVRFAGPVSDVRGLLAAV"
     gene            complement(824..>2087)
                     /locus_tag="VGD38_17360"
     CDS             complement(824..>2087)
                     /locus_tag="VGD38_17360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729856.1"
                     /translation="HAATTRDKLDHVIDAAQRAGVVVYTIHARGLVNSSFLDPGNNRP
                     LDPVGRIDVASIGELESYQDALSALAAQTGGRALRSTNFFDKWVSNVLDETSNYYFVA
                     WRPEKDEEKAAKFRHVKISVVGQPELTVRAPRGYVDGPKPVTASAEAKPAKPKTPETE
                     IREALTDSFPTNGLPVLLSLTYLNTPANGLVVTSSMEISGNGLTYGEDGKQPATIRLA
                     GVVLNDKGKVAGSFRNQLNINPRKANDREGGVFYNHHTPLTPGIYQFRVAARDEKSGR
                     IGSATQWIVIPDLSQNQLTLSSLLLGGQVIEDNRASSPQIQLSVDHSFPRTEPLGYWI
                     FVYNAKRDAGGKPNLTVQTHVLRDGRAVLSSPQRKLNNGGPDPQRIPFGEELALRTLA
                     PGRYDLKVTITDGLAGTTASQLADFIVR"
BASE COUNT          438 a          666 c          561 g          422 t
ORIGIN      
        1 ccaccgcagc cagcaatccg cgcacgtccg aaaccggccc agcaaagcga acgttgtcgc
       61 cgagttgcag ctcactcgcg agtgacgcca gcgattcgta cgcgccgtcg tgacggcccg
      121 ccaggaccaa cagcgccgaa cgcccgctaa actcgttcac aaccttgcgc cacgcacgca
      181 acaacgtcgc atggtccttg ttcaagtgca aatttgcaac catgcacgcg acgaacgttc
      241 gctcgtcaac ggccaaacgc tcgcgccacg cgcttcggtc catctccgcg gcaacggtct
      301 caatcccatt cggaatcacc gtcaccttcg ttgcatcaac gccgagtttt tcgatcagaa
      361 actgtgcgcc cgcttcgcag tttgaaataa accgtggcgt cgcccgcgcg gcctgaggcg
      421 caaaatacga atccagcgcg ccgatccctt catcacgctg gttccacaca caactgctcg
      481 cgccggtcct tttccagatg agaccgcaaa cgacattcgg cccaagcgtg tagggaagaa
      541 tcagatcggg ttccgcttcg cgcaaactgc gagaaaccgt gacaagagcg cgcactctgt
      601 tcgagcgatt tccggagaag ggatatggaa gaactcgcgt cggaagttta tgttgcgagc
      661 aaatctcagc gacaggcccg gacttgttga acccccaaac ttctacgtgc gcctgttcgt
      721 gctcggataa gtacctcgcc agaatcagcg cctggcgttc agcaccgccg agttcaagat
      781 tgccaagaac aaaaatgatc cggcggctgt tgagcatcgg gcatcatcgc acaatgaagt
      841 cggcgagttg gctcgccgtg gttcccgcga gaccgtcggt aatcgtgact ttcagatcgt
      901 accgcccggg cgcgagcgtt ctcagcgcga gctcttcgcc aaacggaatt ctttgcgggt
      961 ctggcccacc gttgttgagc ttgcgttgcg gcgagctcag aaccgcacgt ccatcacgca
     1021 gcacgtgagt ctgcacggtc aaattcggtt tgccgcccgc atcgcgcttt gcgttgtaaa
     1081 cgaaaatcca ataaccgagc ggctcagtgc gcggaaaact gtggtccaca ctcaactgta
     1141 tttgcgggct gctcgctctg ttatcttcaa tcacctgacc gccaagcaac agactgctca
     1201 gcgtaagctg gttctgactc aaatccggaa taacgatcca ctgcgtcgcg ctgccgatac
     1261 ggcccgattt ctcatcacgc gcagccacac gaaactggta aatcccgggc gtcagcggcg
     1321 tgtgatggtt gtagaagacg ccgccctcgc ggtcgttcgc cttgcgtgga ttgatgttca
     1381 actgattgcg aaaactgccc gcaaccttgc ccttgtcgtt gagcacaaca cccgcgagcc
     1441 ggatcgtcgc gggctgttta ccgtcttctc catacgtcaa accattgccc gagatctcca
     1501 tcgaagacgt cacgaccaaa ccattcgccg gcgtgttgag ataagtcaaa gacaaaagca
     1561 cgggcaaacc attcgtcggg aaactatccg tgagcgcttc gcggatctcg gtctcgggtg
     1621 tctttggttt cgccggtttt gcttcggcgg aagccgtaac cggtttcggt ccatcgacgt
     1681 aaccacgcgg cgcgcggacc gtcagctcag gctgtccgac aacgctgatc ttcacgtgac
     1741 gaaacttcgc cgccttctct tcatccttct ccggccgcca cgccacgaag taataattcg
     1801 acgtctcgtc gagaacgttg ctcacccact tgtcgaagaa attggtgctg cgaagcgcgc
     1861 gcccgccggt ctgcgccgcg agcgcactca gcgcgtcctg gtaactttcg agctcaccaa
     1921 tagaagcaac gtcgatccgg cccaccggat cgagaggccg attgttgccg ggatcgagaa
     1981 agctgctgtt gacgagccct cgcgcgtgaa tcgtgtagac caccacaccc gcacgttgcg
     2041 cggcgtcgat cacgtgatcg agcttgtcgc gcgtggtcgc cgcgtgt
//
LOCUS       DASWTX010001139         1949 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_38182, whole genome shotgun sequence.
ACCESSION   DASWTX010001139 DASWTX010000000
VERSION     DASWTX010001139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1949)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1949)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1949
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38182"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1837
                     /gene="asnB"
                     /locus_tag="VGD38_17365"
     CDS             <1..1837
                     /gene="asnB"
                     /locus_tag="VGD38_17365"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HEY0729857.1"
                     /translation="DEALLTRMCDAIRHRGPDDDGFYVNGSVGLAMRRLAIIDLKSGQ
                     QPMHNQDRSAWIVVNGEIYNYLELRAKLEKLGHTFYTNSDTEAIVHAYDQWGVDCPKH
                     LRGMFAFAIWNERTQELFLARDRVGKKPLLYALVNGQLIFGSEFSALLLHPDVSREVQ
                     PEALDYYLSFMCIPAPLTAYRAIRKLEPGHWLRWRKGEIETERYWQPDFTRKLDIGEE
                     EAGERTVEILRDAVKVRLMSEVPLGAFLSGGIDSSAVVALMSQESGERVKTFSIGFEE
                     QDFSELHHARRIAEHVGADHHEFIVRPDAVEVLPMLVEHYGEPYADSSAVPTYYVARE
                     TRKHVTVALNGDGGDESFAGYERYIAMGLTEKYRRVPSILRESVIKETVNRIPSSPIK
                     RSRVNSAKRLLEVVSRPKVDRYMHWMSVFNEQTKQPLYSDAFREQIVDANATGVLDTW
                     FKRANGIGILDAMLLTDQMTYLPNDLLVKVDIATMAVSLEARSPFLDHHVIEFAASLP
                     QKLKLRGLTSKYLLKKVLKKLLPSENLNRRKMGFGVPIGHWFRGKMQPFLREVVLSDK
                     ALRRGLFKPEAVRQLVELHTRGERDYSHQLWTLLMLELWFNRFID"
BASE COUNT          400 a          538 c          601 g          410 t
ORIGIN      
        1 tgacgaagcg ctgttaaccc gcatgtgcga cgcgattcgc catcgcgggc cggacgacga
       61 cggtttttac gtcaacggct ccgtcggcct cgcgatgcgc cgcctcgcga tcatcgacct
      121 gaaaagcggc cagcaaccga tgcacaatca ggaccgttcc gcgtggatcg tcgtcaacgg
      181 cgagatctac aactacctcg aactgcgcgc taagctcgaa aaactcggtc acacgttcta
      241 caccaacagc gacacggaag cgatcgttca cgcttacgat cagtggggcg ttgattgtcc
      301 gaagcacctg cgcggcatgt ttgcgtttgc gatctggaac gagcggacgc aggagctgtt
      361 tctcgcgcgc gatcgcgtcg gcaagaagcc gctgttgtat gcgctggtga acgggcagtt
      421 gatcttcggt tcggagttca gcgcgttgct gttgcatccc gatgtgagtc gcgaagtgca
      481 gccggaagcg ctggattatt acttgtcgtt catgtgcatt ccagcgccgc tcaccgcgta
      541 tcgcgcgatt cgcaaactcg agccgggtca ctggctgcgc tggcgcaagg gcgagattga
      601 gaccgagcgt tactggcagc ccgacttcac caggaagctc gacatcggcg aagaagaagc
      661 gggcgaacgc acggttgaga ttctgcgcga tgcggtgaag gtgcgtttga tgtcggaagt
      721 tccgctcggt gcgtttcttt cgggcgggat cgattctagc gccgtcgtgg cgttgatgag
      781 ccaggagtcg ggcgaacgcg tcaagacctt ctcgatcggt tttgaagaac aggatttcag
      841 cgagcttcat cacgcgcgcc ggattgcgga acacgtcggc gcggatcatc acgagttcat
      901 cgtgcggccg gacgcggttg aagtgctgcc gatgctcgtc gaacactacg gcgaaccgta
      961 cgctgattct tctgccgttc cgacttacta cgtcgcgcga gagactcgca agcacgtcac
     1021 cgtggcgttg aatggcgatg gtggtgacga gtcgtttgcg ggctacgagc gttacatcgc
     1081 gatgggattg actgagaagt atcggcgcgt gccgtcgatc ttgcgcgagt cggtgatcaa
     1141 agagactgtt aaccggattc cgtcgtcgcc gatcaaacga agccgcgtaa actcagcgaa
     1201 gcgcttgctc gaagtggtgt cgcgcccgaa ggttgatcgc tacatgcact ggatgagcgt
     1261 cttcaacgaa cagacgaaac agccgctcta ttcagacgcc ttccgcgaac agattgtcga
     1321 cgcgaatgcg accggcgtgc tggacacgtg gttcaaacgc gcgaacggca tcgggattct
     1381 cgacgcgatg ttgttgaccg accagatgac ttacttgcca aacgatctgc tagtgaaagt
     1441 cgacatcgcg acgatggcgg tctcgctcga agcgcgttcg ccgtttctcg atcatcacgt
     1501 gatcgagttt gcagcgagtt tgccgcagaa gctgaaactg cgcgggttga cgagcaagta
     1561 tctgttgaag aaggtgctga agaagctgtt gccgagtgaa aacctcaacc ggcgcaagat
     1621 gggcttcggc gtgccgatcg gtcattggtt ccgcggcaag atgcagccct ttctgcgtga
     1681 ggtcgtgctc tcggacaagg ccctgcgccg cggtctcttc aaacccgaag cggtgcggca
     1741 actcgtcgaa ctacacacgc gcggcgaacg cgactattcc catcagctct ggacgctgct
     1801 gatgctcgaa ctctggttca accggttcat cgactagtcc gcgtgtcaca gggtgcattg
     1861 tttttaacgc cgaaggcgtt cgctaatctt agcccagggt tgccgcaacc ctgggttcac
     1921 agaagtagaa tgaagctaac gctgaaagc
//
LOCUS       DASWTX010001140         8305 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_125526, whole genome shotgun sequence.
ACCESSION   DASWTX010001140 DASWTX010000000
VERSION     DASWTX010001140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8305
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125526"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(192..1646)
                     /locus_tag="VGD38_17370"
     CDS             complement(192..1646)
                     /locus_tag="VGD38_17370"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HEY0729858.1"
                     /translation="MTTSVSNEEVSVVVTEPAPLAAPQAQERGVYRIRHTLASRFAFL
                     VICVAIVTSALAYGTVHYWALALFNLGALTILILWVADGWRLGNVRISRNLLQLPLLG
                     AVILGLVQLLPLRDAAPGFVNTLSLDPHSTRLVIVQLSTLLVYFAATLVFVDTPHRLH
                     LLVRTIMIFGFLLAIFGLTQSFTSPTKVYWMRELNQSTAFGPFINRHHFAGYMELTIS
                     LPLGLLLAGSIDKEKRLLYLFIAGLMGVALVMTASRGGIISLVAEIVFLVIVTAIWKN
                     PGERRRVRSSRLKGIAGRVALAGALIVGLFMGVILLGGEFSLNRFIDSVNTDDPTTGR
                     AHFWSVTIDMIKANPVLGTGLGAYGVIYTRYDTRNGLYRLEQAHNDYLQVFSDAGVVG
                     AALALAFVVILFYRGFTRARSRDDFRRGVALAALGGCFAVLVHSFFDFTLHTTSNALL
                     FLVLAALATLNGRVEDAPRRRRRRNSEGTAETSD"
     gene            complement(1615..2922)
                     /locus_tag="VGD38_17375"
     CDS             complement(1615..2922)
                     /locus_tag="VGD38_17375"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0729859.1"
                     /translation="MPQELLQLNTRKVAIRLLLIVLLLAAIAWSYYVVRWYAGNTMAD
                     YFDPSENNLRVAQSAVALAPEDPLTHWRLAQATQKSLPLDQQIQAIPLYEKAVSLSPN
                     DYRFWMALGTASEQVGDRVKAERALRQAVTLAPAYAYPHWYLGNLLLRSGRYEEAFAE
                     LRVASEADQEFQPQQFNLIWEIYGADPEGLKKAVGESAVARGKFALYLLGRQKFDEGL
                     GMWDSLSADEKKANKETAEALVTSLVAHSRYHNAMKVWNDIAPSEKFRAEVDKVFDPG
                     FEEASNYGPEMAFGWQVTQVQQVQIGIDPVKSHSGGTSLRLAFHVRSNIENLNVAQLV
                     PVTPNTEYDFEFYVSTEKLETGAPTLVQIVDPVTTGPLVTSPGAPGGTSEWTRVALTF
                     KTGDKMEAVQIKIVRPSCGTEDQPICPIFGSVWYDDFSIKRRG"
     gene            complement(2922..4730)
                     /locus_tag="VGD38_17380"
     CDS             complement(2922..4730)
                     /locus_tag="VGD38_17380"
                     /inference="COORDINATES: protein motif:HMM:NF025104.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729860.1"
                     /translation="MTLSPRTLVAVAAAFVLALLLTPLVRAFARRVGMVAVPKIDRWH
                     KKPTAMLGGVAIWLTVIICFFVFIPHTVYGAVILLASTFLFVVGLVDDVLHIKPYQKL
                     IGQVLGSALVVYYGLSLPWTGSVLLNMALAIFWLIGITNAINLLDNMDGLASGIAIIA
                     AGFLALSFVNSGQFTEALIMLLFAAALLGFLMYNSNPASIFMGDCGSMFVGFFLASSA
                     LINVSGGRSRSLLPVLTVPILVLFIPIFDTTFVTVLRKLSGRAASQGGRDHTSHRLVA
                     LGMSERHAVWMLYGFAALSGVLAILVQRTRLDVSLAAIAGFTILLTLLGVYLAGVKVY
                     DQSDEAMALKEKPLYAFLIDVSYKRRIFEVLLDVVLIIMSYWAAYAINFPPSSPAWDL
                     FIRTLPVLVFIKMSVFLVMGVYRGLWRYTSMSDLIVFAKAVILSSVASLLVLLFQFRF
                     EGFSRKVFVIDAVLMFLFLAGSRMAFRLFRQILPAISTPNGRRVLIYGAGDGGELLLR
                     ELRNNRDLNLSPIGFLDDDPAKSGKLIHGLKVFGGNGDLGTVCTQHEVDEVVISSMKM
                     SDERVHEVLQICAEREIVVKRMRITMEELNGPFIKL"
     gene            complement(4767..5735)
                     /locus_tag="VGD38_17385"
     CDS             complement(4767..5735)
                     /locus_tag="VGD38_17385"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HEY0729861.1"
                     /translation="MRVLITGGAGFIGSHLADAYIQRGDEVYVIDDLSTGTIENIQHL
                     KGQPRFHYTIESVHNQPVTAELVDQCDVIFHLAAAVGVKLIVESPVRTIETNVRGTEV
                     VLSLANKKKKKVLIASTSEVYGLSGDVPFREDGNLVMGATTKGRWSYACSKAIDEFLA
                     LAYWREKKLPTIVVRLFNTVGPRQTGQYGMVIPTFVKQALSGRSITVYGDGKQSRCFG
                     YVGDVVGALIKLMENNNAVGQVFNIGSNQEITILELAQRVKHLTQSDSDIVFVPYDEA
                     YEEGFEDMPRRVPDISKVSELVGFRPEMSLDGILESVIDFQSGRRK"
     gene            complement(5748..7016)
                     /locus_tag="VGD38_17390"
     CDS             complement(5748..7016)
                     /locus_tag="VGD38_17390"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0729862.1"
                     /translation="MADTQHTRIVRIIARLNVGGPAKHVVWLTSGLEEAGYRSLLVAG
                     TVPEGEEDMSYFAEQTGVTPLYIPEMSREISLKDAITTWKLFRLLLREKPDIVHTHTA
                     KAGTVGRVAGFFYRWVTPGILLGRPRACKFVHTYHGHVFHSYYGRLKTGVFLMVERSL
                     ARLVTDKILVVSEQQKAEINEVFRVGRRDQFRVVRLGLDLGIFANHESRRAKFRDELG
                     VDDETVLVGIVGRLTEIKNHEMFLQTVARVDLEKVKFVIIGDGSLREPLEQQAKALGL
                     EQKVIFAGGRKDPEYFYPALDICGLTSRNEGTPLTLIEAMANARPVIATSVGGVVDLL
                     GNVVEEGQFNVCERGISVSPYDVDAFAAALGRLIEDKMLRNRLGRSGFEFVDHNYRKE
                     RLLEDIKDLYGQLLNRERTANCELPVAKYS"
     gene            complement(6989..7738)
                     /locus_tag="VGD38_17395"
     CDS             complement(6989..7738)
                     /locus_tag="VGD38_17395"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HEY0729863.1"
                     /translation="MLAGGLGTRLRPLTSVTNKHLLPVYNQPMIFYPIQTLVNAGISD
                     IMVVTGGSSAGDFLRLLGNGKAFGLQHLNYAYQEGEGGIAEALSLVEHFAAGEPVCVM
                     LGDNIIEGNICAAVEAYRKQGHGAKIILKKVPDPQRFGVPKLDGRRVVYVDEKPAVPQ
                     SDYAVIGVYMYDAGVYDIIRSLKPSNRGELEITDVNNAYIEREEMTWEELEGWWTDAG
                     TFESLLHASKLVAETGANKLQLPWLTHSTQG"
     gene            complement(7771..>8305)
                     /locus_tag="VGD38_17400"
     CDS             complement(7771..>8305)
                     /locus_tag="VGD38_17400"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY0729864.1"
                     /translation="REMGFEVFEGELHDAQFPEGHFDVVTAAELLEHISEPRALLEEV
                     ARILRPGGLFWTTTPHARGISARVLGLKWRCIWPPEHLQLFSIRGLRALLRESGFRDI
                     RVDTTGGNPVEIWHALGRTKTAPKTVDQHFDRVLTSYQLNESLMKSRSRRALKSTVNG
                     FLNLSRLGDSMKVFAVR"
BASE COUNT         1864 a         2676 c         2153 g         1612 t
ORIGIN      
        1 ggggctatgc cccgccttac agtttgctgc tttagctttg gggctatgcc cctggttcgg
       61 gctatgcccc ttctaggcca aaggccgaac gaggggcgta gcccctaaac gaacttacct
      121 acacttccgg caaggcatag ccttgcctca catccggcgg cgaagccgca cgaagggtcc
      181 actaaaattt atcaatcgct cgtttcagcc gtgccttcgg agttgcgccg gcggcggcgc
      241 cgtggtgcat cttctactcg tccgttcaag gtggcaagtg ccgcgagtac caggaacagg
      301 agcgcgttgg aggtcgtgtg cagggtgaaa tcgaaaaagc tatggaccag caccgcaaaa
      361 caccctccta aagccgcaag cgccacgccc cttcggaagt catcacgcga ccgcgcgcgc
      421 gtaaacccgc gataaaacag aatcacgaca aacgccaacg ccagcgccgc acccaccaca
      481 cccgcgtccg agaaaacctg gagataatcg ttgtgcgcct gttcgagccg gtaaagcccg
      541 ttgcgcgtgt cgtagcgcgt gtagatcacg ccgtaagcgc ccaagcccgt tccgagcacc
      601 gggttcgctt tgatcatgtc gatcgtcacc gaccagaagt gcgcgcggcc cgtcgtcgga
      661 tcgtcggtgt tcacactgtc gataaaacgg ttcaacgaaa actcaccgcc caacaaaatc
      721 acgcccataa acaacccgac gatcaacgcg cccgccagcg ccactctccc cgcgatccct
      781 ttcaaacggc tcgatctcac gcgccgccgc tcgcccgggt tcttccagat cgccgtcacg
      841 atcacgagaa acacgatctc cgccaccaga ctgatgatgc cgccgcggga cgccgtcatc
      901 accagcgcaa cgcccatcag tcccgcaata aacagataca gcagacgctt ttccttatcg
      961 atcgatcccg ccaacaacaa tcccagcggc agcgagatcg tgagctccat gtaacccgca
     1021 aagtggtgcc ggttgataaa cggcccaaac gccgtgctct ggttgagctc gcgcatccag
     1081 taaaccttcg tcgggctcgt aaacgactgc gtcagaccaa agatcgcaag caggaaacca
     1141 aagatcataa tcgttcgcac cagcaaatga agccggtgcg gcgtatcgac aaacacgagc
     1201 gtcgccgcaa agtaaacaag cagcgtcgac aactgcacga tcaccaagcg agtcgaatgc
     1261 ggatcgagcg acaacgtgtt cacgaacccc ggcgccgcgt cgcgcaacgg cagcaactgc
     1321 accaacccca gaatcaccgc gcccagcaac ggcaactgca gcaggttgcg gctgatgcgc
     1381 acgttaccca aacgccaccc atcagcgacc cacaaaatca gaatcgtcag cgcgccgaga
     1441 ttgaacagcg cgagcgccca gtaatgcacc gtgccgtacg ccagcgccga ggtcacaatc
     1501 gccacgcaga tcaccagaaa cgcaaacctg ctcgccagcg tgtgccggat gcgatacacg
     1561 ccgcgttcct gagcctgcgg cgccgccagc ggcgcgggct cagttacgac aacgctaacc
     1621 tcttcgtttg atactgaagt cgtcatacca cacggaacca aaaatcggac agatcggctg
     1681 gtcttccgta ccacacgacg gccgcacgat ctttatctgc accgcttcca tcttgtcacc
     1741 ggtcttgaac gttaaagcca cgcgcgtcca ttcagacgtg ccgcccggcg cgcccggcga
     1801 tgtcacgagc ggccccgtcg tcaccggatc gacgatctgc accagcgttg gagcacccgt
     1861 ctcgagcttc tcggtgctga cgtaaaactc aaaatcgtat tcagtgttcg gcgtcaccgg
     1921 caccagttgc gcgacgttga ggttctcgat gttcgagcgg acgtgaaacg cgagccgcaa
     1981 actcgtcccg ccgctgtgac tcttcaccgg atcgatcccg atctgcactt gctgcacctg
     2041 cgtcacttgc caaccaaaag ccatctccgg cccgtagttg ctcgcttctt caaaacccgg
     2101 atcgaaaact ttatccactt cagcgcgaaa cttctcgctc ggcgcaatat cgttccagac
     2161 tttcatcgcg ttgtgataac gcgagtgcgc cacaaggctc gtgaccaacg cttctgccgt
     2221 ttccttgttc gctttcttct cgtccgcgct gaggctgtcc cacatcccca acccctcgtc
     2281 aaacttctgc cgccccagca aatacaacgc aaacttccca cgcgccaccg cgctctcgcc
     2341 gacagctttc ttcaaccctt ccggatcggc gccgtaaatc tcccaaatca ggttgaactg
     2401 ttgcggctga aattcctgat cggcttcact cgcgacgcgc aactccgcaa acgcttcctc
     2461 gtaacgtcca ctgcgcaaca gcaaattgcc gagataccag tgcggatacg catacgccgg
     2521 cgccaaggtg accgcttgcc gcaaagcgcg ttcggccttg acgcgatcgc ccacctgctc
     2581 gctcgctgtc ccgagcgcca tccaaaagcg gtaatcgttt ggcgaaagac tgacggcctt
     2641 ttcatacagc ggaatggcct gtatctgctg gtccaacggc aggctcttct gcgtcgcctg
     2701 ggccaagcgc cagtgcgtca acggatcttc cggcgcgagc gccacagccg actgcgcgac
     2761 ccgcaagttg ttttcggaag gatcgaaata atcggccatc gtgttgccgg cgtaccagcg
     2821 cacgacatag taggaccagg cgatcgccgc cagcagcaac acgatcagca acagcctgat
     2881 tgccactttg cgggtattta attgaagcag ttcctgcggc attacaactt aataaaaggc
     2941 ccgttcaact cttccatcgt gatccgcatt cgtttcacga cgatctcccg ctcagcgcag
     3001 atctgcaaaa cctcgtgaac gcgttcatca gacattttca tactcgagat cacaacctcg
     3061 tcaacctcgt gctgcgtgca aacggttccc aggtcgccgt tgccgccaaa cactttcaag
     3121 ccgtgaatca gtttgccgct cttcgccgga tcgtcgtcga gaaaaccgat cggcgagagg
     3181 ttgagatcgc gattgtttcg cagctcgcgc aacagcagtt caccgccatc gcccgcgccg
     3241 tagatcagca cgcgccgccc gtttggcgtg ctaatcgcgg gcagtatttg ccggaacaaa
     3301 cgaaacgcca tgcggctgcc cgccagaaac aaaaacatca gcacggcgtc gatcacaaac
     3361 accttgcgcg agaaaccctc aaagcgaaac tgaaacagca gcactagcaa actggcaacc
     3421 gaactgagta tcaccgcttt cgcaaacacg atcagatcgc tcatgctcgt gtagcgccac
     3481 agcccgcgat agacgcccat caccaaaaac accgacatct tgatgaacac gagcacgggc
     3541 agcgtgcgaa tgaaaaggtc ccacgccggg ctcgacggcg gaaagttgat cgcgtacgca
     3601 gcccagtacg acatgatgat cagcaccacg tcgagcagca cttcgaaaat ccggcgcttg
     3661 taagagacgt cgatgagaaa cgcgtacagc ggcttctctt tcaacgccat cgcctcgtcg
     3721 ctctggtcgt aaaccttgac gcccgcgaga tacacgccga gcaacgtgag caaaatcgtg
     3781 aaacccgcga tcgccgcaag actcacgtcc aaacgcgtgc gttggaccag gatcgccagc
     3841 actcccgaca gcgccgcgaa accgtaaagc atccacaccg cgtgacgttc cgacatgccc
     3901 aacgccacca gccggtgcga cgtgtgatcg cgtccgccct gcgacgccgc gcgccccgaa
     3961 agcttgcgca gcaccgtgac aaacgtcgtg tcgaagatgg gaatgaacag cacgaggatc
     4021 ggcactgtca gcacgggcaa caagctgcgc gatcgtccac cgctgacgtt gatcagcgcg
     4081 gagctcgcaa gaaagaaccc gacaaacatc gagccgcagt cgcccatgaa gatcgacgcg
     4141 ggattcgagt tgtacatcag gaacccgagc agcgcggccg cgaacagcaa catgatcagc
     4201 gcttcggtga actggccgct gttgacaaaa ctcagcgcga gaaatccggc ggcaataatc
     4261 gcgatgccgg acgcgaggcc gtccatgttg tcgagcaggt tgatcgcgtt ggtgatgccg
     4321 atgagccaga agatcgccag cgccatgttc agcagaaccg atcccgtcca cggcagcgaa
     4381 agcccgtaat aaacgaccaa agccgagccg agcacctggc cgatcagttt ctggtaaggc
     4441 ttgatgtgca gaacgtcgtc gacgagtccg accacaaaca ggaacgtgct cgccagcaaa
     4501 attacagcgc cgtaaaccgt gtgcgggatg aagacgaaga agcagatgat gaccgtcagc
     4561 cagatcgcga cgccgccgag catcgcggtc ggtttcttgt gccaacgatc gatcttcggc
     4621 acagccacca tgccgacgcg gcgggcgaag gcgcgcacga gtggcgtgag cagtaaggct
     4681 aggacgaacg cggcggcaac agccaccagc gtacgcgggc taagagtcat tgttgatttc
     4741 caattgccga ttgccggccg gcaacgctac ttgcggcgac cactctgaaa gtcgattacg
     4801 ctctcaagga taccatcgag actcatctct ggccgaaagc caaccagctc gctgaccttc
     4861 gagatatccg gcacgcgccg cggcatgtct tcaaaacctt cttcgtacgc ctcgtcgtaa
     4921 ggcacgaaca cgatgtctga atccgactgg gtcaggtgct tcacgcgctg cgcaagttcg
     4981 agaatcgtga tctcctggtt cgagccgatg ttgaagacct ggccgaccgc gttgttgttt
     5041 tccatcagct tgatgagcgc gccgacgacg tcgccgacgt aaccaaaaca acggctctgt
     5101 tttccgtcgc cataaacggt gatggagcgt ccggagagtg cctgcttaac aaacgtcgga
     5161 atgaccatgc cgtactggcc ggtctgtcgt gggccgacgg tgttgaaaag ccgcacgacg
     5221 atcgtcggga gtttcttttc gcgccagtag gcgagcgcga gaaactcgtc gatcgctttc
     5281 gaacaggcat aactccagcg gcctttggtt gtcgcgccca tgacgagatt tccgtcttca
     5341 cgaaacggca cgtcgccgct caagccgtag acttccgacg ttgaagcgat cagcaccttt
     5401 ttctttttct tgtttgccag cgacaggacg acttcagtgc cgcgcacgtt tgtttcgatc
     5461 gttcgcaccg ggctctcgac gatgagcttc acgccgactg ccgcggccag atgaaagatc
     5521 acgtcgcact gatcgacaag ctcggccgtg accggctgat tgtgaacact ctcgatcgtg
     5581 taatgaaaac gcggctggcc tttgaggtgt tggatgttct cgatcgtgcc cgtcgagagg
     5641 tcgtcgatga cgtaaacctc gtcgccgcgc tggatgtaag cgtcagccag atgagatccg
     5701 ataaaaccgg cgccgcctgt gataagtact cgcaaccgtt atgctcctta tgaatatttc
     5761 gcaaccggca gttcgcagtt cgcggttcgt tcgcgattca gcaactggcc gtaaagatcc
     5821 ttgatgtctt cgagcaggcg ttccttgcgg taattatgat cgacaaactc gaacccgctt
     5881 cggcctaatc ggtttcttaa catcttgtct tcaatcaacc tccctaaggc cgccgcaaac
     5941 gcgtcaacgt cgtaaggact gacgcttatg cctctctcgc aaacattgaa ttgaccttct
     6001 tcaaccacgt ttccgagcaa gtcaacaacc ccgccaacgc tcgtcgcaat caccggacgc
     6061 gcgttcgcca tcgcttcgat cagcgtcaac ggcgtgcctt cgtttcgcga agtcaaacca
     6121 cagatatcga gcgctggata aaaatactcc ggatcttttc tgccacctgc gaagattact
     6181 ttctgttcaa gccctaacgc tttcgcctgc tgctccagcg gctcacgcaa cgaaccatca
     6241 ccgatgatca cgaactttac tttttcaaga tcgacacgcg ccacggtttg caaaaacatc
     6301 tcgtggttct tgatctcagt cagccgcccg acaatcccaa cgagcaccgt ctcatcatca
     6361 acacccaact catcgcgaaa cttcgcgcgc cggctctcat gattcgcaaa aatcccaagg
     6421 tccaacccca ggcgcaccac ccgaaactga tcccttctcc caacgcgaaa gacctcattg
     6481 atctccgctt tctgttgctc gctgacgacg aggattttgt cggtaaccaa cctcgctaac
     6541 gatctttcga ccatcaaaaa cacaccggtt ttcaaacgcc cgtagtaact atgaaaaaca
     6601 tgcccgtgat acgtgtgcac aaacttgcac gctctcggac gcccgagcaa aattcccggc
     6661 gtcacccagc gataaaagaa acccgccacg cgcccgaccg ttcccgcctt cgccgtgtgc
     6721 gtgtgcacga tgtcgggctt ttcgcgcagc aacagccgaa acagcttcca cgtcgtgatc
     6781 gcgtctttca aagaaatctc gcggctcatc tccggaatgt acaacggcgt cacgcctgtc
     6841 tgttcggcga agtagctcat gtcctcttcg ccttcaggca ccgtgcccgc aacgagcagc
     6901 gatcgataac ccgcctcttc caaccccgag gtcaaccaca cgacatgctt cgccggcccg
     6961 ccgacgttca gccgcgcgat gatcctgact atccttgtgt gctgtgtgtc agccatggta
     7021 gctgcaactt attcgcgccc gtttcggcca ccagtttcga cgcgtgcaag aggctttcga
     7081 acgttcccgc gtcggtccac cagccttcaa gctcttccca cgtcatctct tcacgctcga
     7141 tgtacgcgtt gttgacgtca gtgatttcga gctcgccgcg gtttgaaggc ttgagcgagc
     7201 ggatgatgtc gtacacgccc gcgtcgtaca tgtaaacgcc gatcactgcg tagtcggact
     7261 gcggcaccgc gggcttctcg tccacataaa ccacgcggcg gccgtcgagt ttcggcacgc
     7321 cgaaacgctg cgggtccggc accttcttca aaatgatctt cgcgccgtgg ccctgcttgc
     7381 gatacgcctc gacagcggca cagatgtttc cctcgatgat gttgtcgccg agcatgacgc
     7441 aaaccggttc gccggcagcg aaatgttcga cgagtgaaag cgcttcggcg atcccgccct
     7501 cgccttcctg gtacgcgtag ttgaggtgct gcaggccaaa cgctttgccg ttgccgagca
     7561 gccgcagaaa atcgcccgcc gaacttccgc cggttacgac catgatgtcg gaaatgccgg
     7621 cgttgacgag tgtctgaatc gggtaaaaga tcatcggctg gttgtagacc ggcagcagat
     7681 gtttgtttgt gaccgaggtg agcggacgca atctcgtccc caagcctcct gcaagcacga
     7741 cgcctttcaa cgctgtcctc cggaacgggt ttatcgtaca gcgaaaactt tcattgaatc
     7801 accgaggcga ctgaggttta gaaaaccgtt aacggtgctc ttgagcgccc ggcgcgaccg
     7861 gcttttcatc agcgattcgt ttaactggta actcgttaac acccggtcga agtgttggtc
     7921 gacggtcttt ggcgccgtct tcgtgcggcc cagcgcgtgc cagatctcga ccggattccc
     7981 tccggtcgtg tcgacgcgga tgtcgcggaa gccggactcg cgcagcagcg ctcttaaacc
     8041 gcggattgag aatagctgta gatgctccgg cggccaaatg cagcgccact tcaatccgag
     8101 cacacgggcc gaaataccgc gcgcgtgcgg cgtggtggtc cagaaaagcc cgcccggccg
     8161 cagtattcgc gcgacttcct cgagcagcgc gcgtggttcg gagatatgtt ccaacagttc
     8221 ggccgccgtg accacgtcaa agtggccttc cggaaattgt gcgtcgtgca gttcgccttc
     8281 aaaaacttca aaacccattt cgcgc
//
LOCUS       DASWTX010001141         1655 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_276104, whole genome shotgun sequence.
ACCESSION   DASWTX010001141 DASWTX010000000
VERSION     DASWTX010001141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1655)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1655)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1655
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_276104"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            289..1068
                     /locus_tag="VGD38_17405"
     CDS             289..1068
                     /locus_tag="VGD38_17405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729865.1"
                     /translation="MALSISGSLIVLVFLVQTVLAMIQRGTGWFEFWSWVAAAETAAW
                     RLKWISIPVTFVVLWFGAKLYRSIRQQPARFCGLTYARGGLVASATVACLIALLIGVT
                     VPARLRQRELAKEAKVRAVWHTFEAATLEYKMRYHTYPADFKDIRERIPDPHGTIAAA
                     LDSLVAKGYQPSAEMAVASEKPRPLRSGMAIRNASLSTASDDIPPGGLAFTKFELRMP
                     GEDKILGNEDDWIGRDGVLMRWSDVAKGGVGRSVSAGALQP"
     gene            1076..1363
                     /locus_tag="VGD38_17410"
     CDS             1076..1363
                     /locus_tag="VGD38_17410"
                     /inference="COORDINATES: protein motif:HMM:NF023580.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3592 domain-containing protein"
                     /protein_id="HEY0729866.1"
                     /translation="MSFLDRFRRKTEDEASRIARLSKSGRMTDGNIIDAVSDIEGKIT
                     QVTYTYELAGVLYESSQTLSLQQREHEADYAPGKQIIVRYDPRQPANSIVV"
     gene            1387..>1655
                     /locus_tag="VGD38_17415"
     CDS             1387..>1655
                     /locus_tag="VGD38_17415"
                     /inference="COORDINATES: protein motif:HMM:NF012510.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HEY0729867.1"
                     /translation="MFRKVLIANRGEIAVRIIRACRELGIDTVAVYSEPDAESLHVRM
                     ADEAVCIGPAASSQSYLKIEAVVAAAVSTKAEAVHPGYGFLAENAG"
BASE COUNT          329 a          479 c          500 g          347 t
ORIGIN      
        1 cggatcttat tggaccttcg cccaccggat gtatcacacg tggcgcgagc tgaaccgggt
       61 agaagacaca aaaagagaga acgctgacgc ccaggctgcc gtaaataggt ccacgggacc
      121 gattgggcct atgttggttg atcgaaaggt agaactttga ctatctgtcc gtgctgcggc
      181 ttcaagtttc atggagcact aagcagcggt tgtaaacagt gcggcgcacg tgccgtcggc
      241 gagcctcttc ccaggcccgc taacgaacta ccctcctatg gccgcgcatt ggctctctcc
      301 atcagtggtt cactgatcgt actcgtcttc ctggtccaaa cagtcctggc aatgatccag
      361 cgcggtaccg gctggttcga gttctggtcg tgggtcgcgg cggcagaaac ggctgcgtgg
      421 cgcctgaagt ggatctccat cccggtgacg ttcgtggtgc tgtggtttgg cgccaagctc
      481 taccgctcga tccggcaaca gccggcgagg ttctgcgggc tgacctatgc gcgcggcggc
      541 ctggttgctt cggcgacagt cgcttgtttg attgccttgt tgatcggtgt cacggttccg
      601 gcgcgtttgc gccagcgcga gcttgcgaaa gaagcaaagg ttcgcgcggt ttggcacacg
      661 tttgaagcgg caacgctcga atacaagatg cgttaccaca cgtatccggc agacttcaaa
      721 gacatccgcg aacgcattcc ggatcctcac ggcacgatcg cggcggcgct tgatagtctc
      781 gtcgcaaagg gctaccagcc cagcgccgaa atggcggtcg ccagtgaaaa gccccggcca
      841 ctccgcagcg gcatggccat ccgcaacgct tcgctttcca cggccagcga cgacattccg
      901 ccgggtggtt tagcgttcac gaagttcgaa ttgcgcatgc ccggtgagga caaaatcctc
      961 ggcaacgagg acgactggat cggacgcgat ggcgtgctca tgcgctggtc agacgtcgcc
     1021 aaaggcggcg tcggtcgctc agtttccgca ggagcgcttc aaccttagcg acgcaatgtc
     1081 gtttctcgat cgttttcgcc gcaaaactga agacgaagcc tcacgcattg cccgtctctc
     1141 aaaatccggc cgcatgaccg acggcaacat catcgacgcc gtctccgaca tcgaaggcaa
     1201 gatcactcaa gtcacttata cctacgagct ggccggcgtg ctttacgagt cgtcgcagac
     1261 gctcagcttg cagcaacgcg agcacgaagc ggactacgca cccggcaaac agatcatcgt
     1321 gcgttacgat ccacgccagc cggccaattc aattgttgtg taatccgtgt acaatccgtg
     1381 cctgatatgt tccgcaaggt cttaattgcc aaccgcggcg agatcgccgt tcgcattatt
     1441 cgcgcgtgcc gcgagttggg catcgacacg gtcgcggttt attccgagcc ggacgctgag
     1501 agtctgcacg tgcgcatggc tgatgaggcg gtgtgtattg gaccggcggc gtcgagtcag
     1561 agttatttga agatcgaagc ggtggttgct gcggcggtgt cgacgaaggc ggaagcagtt
     1621 catccgggtt atggatttct tgctgagaac gcggg
//
LOCUS       DASWTX010001142         2571 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_300792, whole genome shotgun sequence.
ACCESSION   DASWTX010001142 DASWTX010000000
VERSION     DASWTX010001142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2571
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300792"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..366)
                     /locus_tag="VGD38_17420"
     CDS             complement(<1..366)
                     /locus_tag="VGD38_17420"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY0729868.1"
                     /translation="MATPSISKNRHVSQKASSFTESVIREMTREALKHGAVNLSQGFP
                     DFSAPEDIKRKAMEAIAADVNQYAITWGSKDFRNAIARKTRAYLGLEIDPETEITVTC
                     GSTEGMIAAMMATVDPGEEV"
     gene            complement(442..1335)
                     /locus_tag="VGD38_17425"
     CDS             complement(442..1335)
                     /locus_tag="VGD38_17425"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0729869.1"
                     /translation="MVFALRVICLYSLLLTLALVAHAQQAALTITTEPNAIVWIDEVR
                     RGTTDASGKLTLKKISPGRHTVRVRANGFKETTASLLPGRRTLAVKLVPTTDEAELLF
                     QKAETAREQARDDAAREKAADLYREVLKVRAAYPAAHVGLARLLLDLNKFKEARAEID
                     AARRTRPVYPEASAVEGRIYREEAFDEEAIRSFRRAIREARGFQPEAHVGLARLLEDK
                     GDFAAAVVELRKALDQLSDSEPVIYQMLGAAYEKLNKPKEAIAAYEKYLELAPNGSYA
                     AALRSILNQLKREADGEEIIP"
     gene            complement(1340..>2571)
                     /locus_tag="VGD38_17430"
     CDS             complement(1340..>2571)
                     /locus_tag="VGD38_17430"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEY0729870.1"
                     /translation="NAADSNYFLRAAVNGFSSSIEVAQAQFDLAWDAHEARNFAESSR
                     MLTEHLAYYADKNTDNRGRAGYWAARDSERAGKLAEARALYEAMQGRYDANWYGYLAK
                     QRLDVLSRTTPAKTFPPDSIVARAVANLQTVTVAEETADADADMRIVKADELDNVGLD
                     ELALKELASASEKTPDSPKVNLAIAKIHRSNDDNVRALNTLRRSFPDYSQMKPEEMTR
                     EQWDVFYPLAYWDIIVQESRARNLDPYQVAGLIRQETIFTTRARSSAAAYGLMQVLVP
                     TARLTARKYGVSREITAETLYEPRLNIQLGTAYLRDQIDKFGRIEYVAAAYNAGPGRA
                     VAWRASLPLEIDEWAEAVPFKETRGYIQGVVRNRLQYLRLYDEKGNWRPEVGARAIAP
                     SQDPSVRKRRVSGSGEE"
BASE COUNT          485 a          760 c          749 g          577 t
ORIGIN      
        1 gacttcttcg ccgggatcga cggtggccat catggcggcg atcatgcctt cggtcgagcc
       61 gcaggtgacg gtgatttcgg tttcgggatc gatctcgaga ccgagatacg cgcgcgtctt
      121 gcgtgcgatg gcgttgcgaa aatctttcga gccccaggtg atcgcgtatt gattgacgtc
      181 cgcggcgatc gcttccatcg ctttgcgctt gatgtcttcg ggcgcggaga agtcgggaaa
      241 gccctgcgac aggttgacgg cgccgtgctt cagcgcctcg cgcgtcatct cgcggatgac
      301 agactcggta aacgaactcg ccttctgcga gacgtgacgg ttctttgaga ttgagggggt
      361 agccatgtgg ttttctccaa cgagtgagcc acagagtaca caaaacagtt cgatgaggca
      421 aaaaatctgt gtaatctgtg gttaggggat gatttcttcg ccgtcggctt cgcgttttag
      481 ttggttgagg atggagcgga gggcggcggc gtagctgccg ttgggggcga gctcgaggta
      541 tttttcgtag gccgcgatcg cttctttcgg tttgtttagc ttttcatagg ccgcgccgag
      601 catctggtag atgacgggtt cgctgtcgga aagctggtcc aacgctttgc gcaattccac
      661 cacggcggcg gcgaagtcgc ccttgtcttc aagcaagcgc gctaaaccga cgtgcgcctc
      721 cggttgaaag ccacgtgcct cacgaatggc gcgccggaac gagcgaatcg cttcttcgtc
      781 gaaagcttct tcgcgataga tgcgcccttc gactgccgaa gcttccggat acacgggccg
      841 cgtgcgccgc gccgcgtcaa tctcagctcg cgcttctttg aatttgttca ggtcgagcag
      901 caagcgggcg agcccgacgt gtgccgccgg atatgctgcg cgaactttca gcacttcacg
      961 atagagatcc gcggctttct cgcgcgccgc atcgtcgcga gcttgttcgc gtgcggtctc
     1021 tgctttttga aacagcagtt cggcttcgtc tgttgtgggc acgagcttca ccgctaacgt
     1081 gcggcggccg ggaagtaatg aagcggtagt ttccttgaaa ccgttggcgc gaacacgcac
     1141 cgtgtgccgg ccaggtgaaa tctttttgag cgtgagtttg cctgaagcgt cggtagttcc
     1201 gcgtctgact tcgtcgatcc agacgatcgc gtttggttcg gtcgtaatgg tgagcgcagc
     1261 ttgttgcgcg tgcgccacta gcgcgagcgt aagaaggagg gaataaagac agataacccg
     1321 aagagcgaaa accatggatt tattcctcgc cgctgccact aacccggcgc ttgcgcacgc
     1381 tcggatcctg cgagggcgcg atggcgcgtg cgccaacttc gggacgccag ttgcccttct
     1441 cgtcgtaaag ccgcaggtac tgcaaacgat ttcgcaccac gccctgaatg tatccgcgcg
     1501 tctctttgaa cggcaccgcc tcagcccact catcaatctc cagcggcaac gaagctctcc
     1561 acgcgaccgc gcggcccgga ccagcgttat aagcagcggc gacatattca atgcgcccaa
     1621 acttgtcgat ctgatcgcgc agatacgccg tgccgagttg aatattcaaa cgcggctcgt
     1681 acaacgtttc cgccgttatc tcacggctca cgccgtactt tcgcgccgtc agtctcgcgg
     1741 tcggcaccag cacctgcatc aagccatacg ccgccgccga cgatcgtgca cgcgtcgtga
     1801 agatcgtttc ctgacgaatc aaccccgcga cctgatacgg atcgagattt cgcgcgcgcg
     1861 actcctgcac gatgatgtcc cagtacgcga gcgggtaaaa cacgtcccac tgctcgcgcg
     1921 tcatctcctc gggtttcatc tgcgagtaat cgggaaaact gcggcgcagc gtgttcagcg
     1981 cgcggacgtt atcgtcgttt gagcgatgta tcttcgcgat cgcgagattt actttcggac
     2041 tgtcgggtgt tttttcacta gcgctcgcca attcttttaa ggcaagttca tcgagaccaa
     2101 cgttgtcgag ctcatctgct ttgacgatgc gcatgtcggc gtcagcgtca gcagtttctt
     2161 cggcgaccgt caccgtctgc aaattcgcaa cagcgcgcgc aacgatcgaa tcaggcggaa
     2221 atgttttcgc cggagttgta cgactcaaaa cgtcgagccg ctgtttagcg agatagccat
     2281 accagttcgc gtcgtaacga ccctgcatcg cctcgtaaag cgcacgcgct tctgccagct
     2341 tcccggcccg ttcggaatcg cgcgcggccc aatatcccgc acgcccgcga ttgtccgtat
     2401 tcttatcggc gtagtacgcg agatgctccg tcagcatgcg cgacgactcc gcgaagttac
     2461 gcgcttcgtg cgcatcccac gcgaggtcaa actgcgcctg ggccacttcg atcgaactcg
     2521 aaaacccatt caccgccgcg cgcaaaaaat agttcgagtc agcagcgttc t
//
LOCUS       DASWTX010001143         2453 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_107100, whole genome shotgun sequence.
ACCESSION   DASWTX010001143 DASWTX010000000
VERSION     DASWTX010001143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2453)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2453)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2453
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107100"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            196..1188
                     /locus_tag="VGD38_17435"
     CDS             196..1188
                     /locus_tag="VGD38_17435"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY0729871.1"
                     /translation="MKEKLLSYLVCPSCNGSLELSAERVEQQEIMEGAFRCNACATSF
                     PITRGIPRFAELSEVESDKQATAANFGWQWQHFTEEDSRYAEQFLGWIAPVTPEFFQN
                     KVVLEGGCGKGRHTQLAARWGAQDVIGIDLSGAVETAFAATRSLPNAHIVQADIYRLP
                     LARKFDYAFSVGVLHHLPDPRGGFMSLASKLKPGGYLSAWIYGAENNEWIVRWVNPVR
                     ERVTSRLDKRVLLQLSKLPAACVYLATKLVYGPLNKNGSSVAKRLFYNDYFRAIAPFG
                     WREQHLIVFDHLVAPTAFYIPRDEFEEWWRELGASDVTISWHNKNSWRGRGVIP"
     gene            1227..2054
                     /locus_tag="VGD38_17440"
     CDS             1227..2054
                     /locus_tag="VGD38_17440"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0729872.1"
                     /translation="MTLTAQTAHRKIWRPLWELPARADLIFSFAKRDLLGRYKGSALG
                     IAWAVLTPVVMIAIFTFIFAGIFGARFGAGDSHWDYALYLFCGLLPWTMFQETVQQSS
                     NTIVANANLVKRVVFPLETLPAAQAFAALGNQLFATIALLIAAVVIRQNLQLTALWLP
                     VLLIPQLLFALGAAWLIASLGVFLRDIAQGITLLLMAWMYLTPIIYPESIVPERFRWF
                     IGINPFTSLVRSYRRIFLEGLPPDWRGLLYFTLVALVIFIFGYWWFARTRKNFADVI"
BASE COUNT          431 a          727 c          738 g          557 t
ORIGIN      
        1 ctcacgttca tcaggaacaa acctctgcgc gatgctgaca ccgcgcgcgc cgtgacctgc
       61 ggcttcctca actccgcgga ataccaggag cgcttcggca tgctcgccac tcacgacccc
      121 cgcgaatgca aataacgcgc agaatgctat agttgctcac cgaagtatca ctccaaacaa
      181 agatcctggc ggcgcttgaa ggaaaaacta ctctcgtatc ttgtctgtcc ttcgtgtaac
      241 gggtcgctcg agctttctgc cgagcgtgtc gagcagcagg aaataatgga aggcgctttc
      301 cgctgtaacg cttgcgccac ttcgtttcca attacgcgcg gcattccgcg tttcgcggag
      361 ttgtcagagg tcgagagtga caagcaggcg acagcggcga acttcggttg gcagtggcaa
      421 cacttcaccg aagaagactc gcgttacgcc gaacagtttc tcggctggat cgcgccggtg
      481 acgccggagt tttttcaaaa caaagtggtg ctcgaaggcg gttgcgggaa agggcgccat
      541 acgcaactcg cggcgcgttg gggcgcgcag gacgtcatcg gtatcgatct gagcggggcg
      601 gttgaaacag cattcgcggc gacgcgttcg ttgccgaatg cgcacatcgt tcaggcggac
      661 atttatcgac tcccactcgc gcgtaagttt gactacgcgt tctcggttgg cgtcttgcac
      721 cacttgcccg atccgcgcgg cgggtttatg tcgctcgcgt cgaagctgaa acctggcggg
      781 tatttgtcgg cgtggatcta cggcgcggag aacaacgagt ggatcgtacg ctgggtgaat
      841 ccggtgcgcg agcgagtgac gtcgcggctc gacaagcgag tgttgttgca gttgtcgaaa
      901 cttccggcgg cgtgtgttta cctggcgacg aagctcgtgt acggaccatt gaacaagaac
      961 ggttcgtcag tcgcgaagcg tcttttctac aacgattact tccgcgcgat cgcgccgttt
     1021 ggctggcgcg agcagcatct gatcgttttc gatcacctcg tggcgccgac ggctttttac
     1081 attccgcgcg acgagtttga ggaatggtgg cgcgagctcg gcgcgagcga cgtgacgatt
     1141 agctggcaca acaagaacag ttggcgggga cggggagtca taccttagca aagcttcttg
     1201 tgccttttgt gcttcttcgt ggctcgatga ccttaactgc acaaaccgct caccgaaaaa
     1261 tttggcggcc gttgtgggaa ctgcccgcgc gcgctgacct gatcttttcg tttgcgaaac
     1321 gcgatctgtt ggggcgttac aaaggctcgg cgctgggcat tgcgtgggcc gtgttgacgc
     1381 ccgtcgtgat gatcgcgatc ttcacgttta tcttcgcggg catcttcggc gcgcgcttcg
     1441 gcgccggcga ttcgcactgg gactacgccc tgtacctgtt ttgcggtttg ttgccgtgga
     1501 ccatgtttca ggaaacggtg cagcaatcgt cgaatacgat cgtcgcgaat gcgaaccttg
     1561 tgaagcgtgt ggttttccca ctcgaaacac ttccggcagc gcaggcgttt gcggcgctgg
     1621 gcaatcaact cttcgccacc atcgctttgt tgatcgcggc ggttgtgatt cgtcaaaact
     1681 tacagctcac ggcgctgtgg ctgccggtgc tgttgattcc gcaactcctg tttgcgctcg
     1741 gcgcggcgtg gctgatcgct tcgctcggcg tgtttctgcg cgacatcgcg cagggaatca
     1801 cgttgctgtt gatggcgtgg atgtacctga cgcccatcat ctatccggag tcgatcgttc
     1861 ccgaacgttt tcgctggttc atcggcatca acccattcac ctcactcgtg cgcagttacc
     1921 gccgcatctt cctcgaaggc ctccctcccg actggcgtgg cctcctctac ttcaccctcg
     1981 tggccctggt aatcttcatc ttcggctact ggtggttcgc ccgaacccgc aagaacttcg
     2041 ccgacgtaat ctgaacaacc gcgtgagcgt ttcggtaacg cgtttcctcc tactctcgaa
     2101 ctcctgtaca cggctccgct gccgagcgat ccgccagacg cggctacgcc gttcggagcg
     2161 ttccgtcgga cgcggctacg ccgttcggag ccttcagtcg gacgcggcta ccccggcgtt
     2221 ccgaacgctg ctacgcccgt tcagagcgtt cggtcgaacg cggcgacgcc gccggatgtg
     2281 aggcgaggct ccgcctcgcc ggaggaggct agaaaagtta aagggctacg cccctggttc
     2341 gggcttgccc taaaaggctt gggccatagg ccgtaccagg ggcatagccc ctttcgtttt
     2401 tggaagctcc ggcgaggcgg agcctcgcct cacatccggc ggcgtcgccg cgt
//
LOCUS       DASWTX010001144         3766 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_389610, whole genome shotgun sequence.
ACCESSION   DASWTX010001144 DASWTX010000000
VERSION     DASWTX010001144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3766
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389610"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..648)
                     /locus_tag="VGD38_17445"
     CDS             complement(<1..648)
                     /locus_tag="VGD38_17445"
                     /inference="COORDINATES: protein motif:HMM:NF018446.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022841 - potassium ion leak channel
                     activity [Evidence IEA];
                     GO_process: GO:0071805 - potassium ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HEY0729873.1"
                     /translation="MPRTRHNERTLGKTHGAERGLNRFEGFSDAVFAIALTLLIVEIK
                     VPGSPEGPHGYSDLARAIAEQWREHLALVLCYLVIGAYWLQHHYSGRIYAKTDHWFGA
                     INLLFLLAIVVIPYPIRVWCFHLGTPFEAVASATLAVGLALIACAWMAKWFYGNAALP
                     ANGQTARARFPPADEAPLRQCNADPDRCGSGRVRGAARRSGHRPAVRHLLPAAAAQ"
     gene            complement(693..2195)
                     /locus_tag="VGD38_17450"
     CDS             complement(693..2195)
                     /locus_tag="VGD38_17450"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY0729874.1"
                     /translation="MATASSTAQQAISKKPFDGFDNIFLNGKWRPGSSDQAYDDTNPY
                     TNEVLVSIPLANEGDLNEAFHAARSAQPNWCRMLPAERSKILRRAADIMEQRREEIVG
                     WLIRESGSTRIKANVEWQYAHGITLEAATFPSRIEGPIMPCDIPGKENRVYRQPVGVV
                     GMISPWNFPFHLSSRSIAPAIALGNTVVIKPASDTPVTGGLLLGKIYEEAGLPAGVLN
                     VVIGRGSVIGDAFIRHPTPRVLSFTGSTEVGRHIMGTASQGQTLKRVVLELGGNSPLV
                     VLDDADVGLAVNSAVFGKFLHQGQICMAINRIIVDARVHDEFVEVFTERVRQLKYGNP
                     NDDDTIVGPLINKQQLKTLLEHIAKARLEGAKAVIDGEPEGLVLPPHVFINATNEMSI
                     AQEELFGPVVSIIKVRDENEALAAANDTTYGLSSAVWTRDLERGNRFALRLEAGMTHV
                     NDSPVNDLPNCPFGGEKNSGLGRYNGQWSIEEFTTVHWISVQHEPVQYPF"
     gene            2352..3236
                     /locus_tag="VGD38_17455"
     CDS             2352..3236
                     /locus_tag="VGD38_17455"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY0729875.1"
                     /translation="MREATQLDHAPRVRTTPLPSGRPIPVLGQGTWKMGEDPSRRESE
                     IAALRLGLNLGMNLIDTAEMYGEGGAEEIVGEAIAEGREDVFVVSKVYPHNATRSGAI
                     KACERSLRRLKTDYIDLYLLHWRGDVPLVETVEAFQQLRETGKILEHGVSNFDVADME
                     EWVALPGGDEVATNQVFYNLMHRGIEWDLIPWSRERQIPIMAYSPVAHKTDEQKRMFN
                     DRTIKLIAAEHGATPAQIALAWVLREPDLIGIPKASRAEHIRQNRAAFDIQLTDDDLE
                     KLDEIFPPPKRKIPLEML"
     gene            complement(3271..>3766)
                     /locus_tag="VGD38_17460"
     CDS             complement(3271..>3766)
                     /locus_tag="VGD38_17460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018250648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY0729876.1"
                     /translation="EQSEPEDKIECKVTGILKFVGLQDAADKLPAELSGGMKRRVAIA
                     RAVVDEPEIVLFDEPTTGLDPPTAGTICELGLKLRDVLGVSSIWVTHRIEDVRFLASK
                     TARVAPGNRTQIEDEGERFCLANTRVMMLHHGRIIFEGPDELFWKSNDPVIREFVEYD
                     TAPQ"
BASE COUNT          828 a         1033 c         1096 g          809 t
ORIGIN      
        1 ttgggctgcg gcagcaggaa gaagatgacg cacagcaggg cgatggccac tccgacgcgc
       61 ggcgccgcga acgcgaccgg aaccgcagcg atctggatca gcgttgcact gccgtagcgg
      121 cgcctcatct gctggaggaa atcgggcgcg agccgtttgt ccattagccg gcagtgcggc
      181 atttccgtag aaccacttgg ccatccaggc gcaggcgatc agggccaggc caacagccag
      241 ggtcgccgac gcgacggcct cgaagggcgt gccgaggtgg aagcaccaca cgcggattgg
      301 atagggaatg acgacgatgg ccagcaggaa cagtagatta atcgcgccga accagtgatc
      361 ggtcttcgcg tagatgcggc ccgaataatg gtgttgcagc cagtaggcac cgattacgag
      421 atagcagaga accagcgcga gatgttcgcg ccactgctcg gcgatggccc ttgctaaatc
      481 gctgtagcca tgcgggccct cgggagatcc ggggaccttg atctcgacga tcaggagggt
      541 tagcgcgatt gcgaaaaccg cgtcgctgaa accctcaaag cggttaagcc cgcgctcggc
      601 gccatgtgtt ttcccgaggg tgcgttcgtt atgccttgtg cgtggcatca ggtgcgtcgt
      661 gtcgccgatc ctcgcggcgc ggattcccct ggctagaatg gatactgaac cggttcgtgc
      721 tgcactgaga tccagtgaac agtggtgaac tcttctatgg accattgccc gttgtaacgg
      781 cccagaccgc tgttcttctc gccgccaaac gggcagtttg gcaggtcgtt taccggcgag
      841 tcgttcacgt gagtcattcc tgcttccagc cggagtgcga aacgattacc acgctcgagg
      901 tcgcgagtcc acacagcact cgacaatccg tatgttgtat cgttcgccgc ggctagtgcc
      961 tcattctcat cgcggacctt gatgattgac accactggtc caaacaactc ctcctgcgcg
     1021 atcgacattt cattcgtggc gtttataaaa acgtgcggcg gcaatacgag tccttcgggc
     1081 tcgccgtcga tcacggcctt cgcgccttcc aaacgtgcct tcgcgatgtg ttccaacagt
     1141 gtttttaact gctgcttgtt gatgagtggg ccgacaatcg tgtcgtcgtc attaggattt
     1201 ccgtatttca actggcgcac gcgctcggtg aacacctcga caaattcatc gtgcaccctg
     1261 gcgtccacga tgatccggtt gatggccatg cagatctgac cctgatgcaa aaactttccg
     1321 aagacggcgg aatttacggc cagacctacg tcggcgtcgt cgagcacgac gagtggactg
     1381 ttgccgccga gctcgagcac cacgcgcttg agtgtctgcc cttgtgaggc agttcccatt
     1441 atgtgacggc cgacttcagt tgagccggta aacgagagca cgcgcggggt tggatgccgg
     1501 ataaacgcat cgccaatcac actgccccga ccaatgacga cgttgagaac gcccgccgga
     1561 agtccggctt cttcgtagat tttgccgagt agtaatccac ccgtgactgg cgtgtcagag
     1621 gccggcttga ttactacggt attccccagc gcaattgcag gcgcgataga gcggctgctc
     1681 agatgaaaag gaaaattcca cggactgatc atgccgacga cgccgacggg ttgacgatac
     1741 acgcgattct ccttgcccgg gatatcgcac ggcatgatgg gtccctcaat gcgcgaagga
     1801 aacgttgccg cttcgagtgt gattccgtgt gcgtattgcc attcgacatt ggctttgata
     1861 cgagtgctgc cagactcccg tatcagccag ccgacaatct cttcgcgtcg ttgttccatg
     1921 atgtccgcgg cgcgccggag aatcttggac cgctccgccg gcaacatgcg acaccagttc
     1981 ggctgagcag atctcgcggc atgaaacgct tcgttcaggt caccttcgtt ggcgagagga
     2041 atgctaacca acacttcgtt tgtataagga ttggtatcgt cgtaagcctg atcgctgctg
     2101 ccgggacgcc acttgccgtt aaggaatata ttgtcgaaac cgtcgaaagg ctttttggag
     2161 attgcctgtt gggctgttga tgatgctgtt gccatgaaga gcgttgtggc aaccaacgtg
     2221 ccttgtatta aatggcaaaa atattaaatg gcaaaaacga ggtgtaaagc agattcggat
     2281 cattgctggg tcaggttacc cggccaaatg ggctaaagca cccaacaact atcaggggca
     2341 ggaggagaaa catgcgggaa gcgacacaac ttgatcacgc gccgagagtg agaaccacgc
     2401 cgttgccttc gggacggcca attcctgtgc ttggtcaggg aacatggaag atgggcgaag
     2461 atccttcgcg acgcgagtcc gagatcgcgg cactgcggtt gggtttgaat ctcggcatga
     2521 acctcatcga caccgccgag atgtacggtg aaggtggtgc ggaagagatc gttggtgagg
     2581 cgattgccga aggtcgcgag gatgtgtttg tggtcagcaa agtctatccg cacaacgcta
     2641 cgcgaagcgg cgcgattaag gcgtgtgagc gaagtttgcg acgactcaag acggactaca
     2701 tcgatctcta tctcttgcac tggcgcggcg acgtgccgtt ggtggaaaca gttgaagcgt
     2761 ttcagcagtt aagggaaaca ggaaagatcc tcgagcacgg cgtgagcaac tttgacgtcg
     2821 cagatatgga agagtgggtt gctctgccgg gcggtgatga ggtcgctacc aatcaggtgt
     2881 tttacaacct gatgcatcgc gggatcgagt gggatttgat tccatggagt cgcgagcggc
     2941 aaattccgat catggcgtat tctccggtgg cgcataaaac ggacgagcag aagcgcatgt
     3001 tcaatgatcg cactatcaaa ttgatcgccg ccgaacacgg cgccacgccg gctcagatcg
     3061 cgctcgcctg ggtgcttcgc gagccggacc tgattggaat tcccaaagcc agccgggcgg
     3121 aacacattcg ccaaaatcgc gctgcgttcg atatccagct taccgacgac gatctcgaaa
     3181 agctggacga gattttccca cctccaaaac gaaagatccc actcgaaatg ctctgacgtc
     3241 ttctctgttg cacagagatc catcgccgag ttactgaggg gccgtatcgt actccacgaa
     3301 ctcgcgaatc actggatcgt ttgatttcca gaatagttca tccggacctt caaaaatgat
     3361 gcggccgtgg tgcagcatca tgactcttgt atttgccaaa cagaaacgct ctccttcgtc
     3421 ttcgatctga gttcggtttc ctggcgcaac gcgtgcagtt ttggaagcca ggaagcgaac
     3481 gtcctcgatg cgatgcgtga cccagatgga actcacacca agcacgtccc gaagtttgag
     3541 acccagctca caaatggttc ccgcggtggg gggatcaagg ccggtagtag gttcatcgaa
     3601 caaaacaatt tccggttcgt ccacaaccgc acgagcaatc gcgacccgtc gcttcatgcc
     3661 gcctgaaagt tccgccggca acttgtcggc agcgtcctgg agaccgacaa acttaagaat
     3721 ccccgttacc ttgcattcga ttttatcctc gggctcgctt tgttcg
//
LOCUS       DASWTX010001145         2798 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_300834, whole genome shotgun sequence.
ACCESSION   DASWTX010001145 DASWTX010000000
VERSION     DASWTX010001145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2798
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300834"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1443)
                     /locus_tag="VGD38_17465"
     CDS             complement(<1..1443)
                     /locus_tag="VGD38_17465"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0729877.1"
                     /translation="MVSPAENQNATLLIVDDDHAARERLREIFETAKYRVVTANEAAS
                     ALRVLKGVRCDLVALDLEMPGVDGLALCKLLRAQPTTSKLPIIALSESDDEARKVQAF
                     TAGADDYITKPSTPGELLSRVSLHVRTSQREWALIGSNRELRFLSDIGRGLLRALEPE
                     QLVRRVAGATYDALDASLCSAYVTVGRDKHVVCVFDREGSADDQTLLDQDALKDWLAS
                     SDSMSSRMITQSSDFLLADDIHAVEYVSPFRFAGRAKGALIVAFDLREQCGETERRLI
                     DAAAQQTSLAAHICSLYQAARDTSVSLAREVERRTAETEAQKRFIEAIVDSLPLSLYA
                     IDRQYRVVAWNRNRELGELGIPRGSVLGKNVFNVLTRQPREMLEQEFSRVFESGEIER
                     IEQETPTPKGDLRHWVISKIPMWADMTGQVSHVITVGEDVTDRVEANRAVARAEKLAA
                     VGRLAAGVVHEINNPLATISACAESLEARLN"
     gene            complement(1489..>2798)
                     /locus_tag="VGD38_17470"
     CDS             complement(1489..>2798)
                     /locus_tag="VGD38_17470"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEY0729878.1"
                     /translation="IPITARIISVVDCFDSVREDRPFRRGMTLGEATALLLRGSGIHF
                     DPVVVEQFIKHLPRFESQIEAMGLQHQPVNHLPEPPLQLSEIDLDQTRERGSYIAYDQ
                     IKKAHREVYALYEIARTFGTSLNIEHTLEILVDKVGHVVPFDTCVVYFYDDAKGYATA
                     RHVVGKNAQKLASRCIVLGEGVTGFALANRRPVNQLHPSLDFTDINPEAGIKYRSMAS
                     LPLFKDDVLLGALSVYSSELDQYTDDHMRLLETVTRLAADALGNAMQHAEAESNALTD
                     PLTGLPNARYLSLRFDEEAARARRTDRAFQVMMLDLDEFKSVNDTFGHKTGDKMLREV
                     AHIIEGQLREYDFLARYGGDEFVALVQEMAGSQVDELCRRIENAVQKFSLMVGRNRYA
                     RVGISVGTATFGIDGNTLDQLVVSADEKMYRMKSSHRLERTVA"
BASE COUNT          545 a          847 c          844 g          562 t
ORIGIN      
        1 attcaaccgc gcttcgagtg attccgcaca cgccgagatc gtcgcgagcg gattattgat
       61 ctcatggacc acgccggccg cgagccggcc gacggcggct aacttctccg cgcgcgccac
      121 ggcgcgattc gcttcgacgc gatcggtcac gtcttcgccg actgtgatca cgtgactcac
      181 ctggcccgtc atgtcggccc acatcggaat cttgctgatc acccagtgtc gaaggtcgcc
      241 tttgggcgtc ggcgtctcct gttcgatgcg ttcaatctcg ccgctttcga agacgcgcga
      301 gaactcctgt tcgagcatct cgcgtggttg gcgagtcagc acgttgaaga cgtttttgcc
      361 gagcacggag ccgcgcggga taccgagttc gccgagttcg cgattgcggt tccacgcgac
      421 gacgcgatac tggcgatcga tcgcgtagag agacagcggc aggctatcga cgatggcttc
      481 gatgaaccgt ttttgcgcct cagtttccgc ggtgcggcgt tcgacttcgc gtgcgagact
      541 taccgaagtg tcgcgcgcgg cctggtagag cgaacagatg tgcgcggcga gtgatgtttg
      601 ttgtgcggcg gcgtcgatca aacggcgttc ggtctcgccg cactgctcgc gcagatcgaa
      661 cgcgacgatc agcgcgccct tagcacgtcc cgcgaagcga aaaggagaaa cgtactcaac
      721 agcatgaatg tcgtcggcca gcaggaagtc tgacgactgc gtgatcatgc gcgagctcat
      781 cgagtcggag gaggcaagcc aatccttcag cgcgtcctgg tccaagagcg tttgatcgtc
      841 cgcgcttccc tcgcgatcga aaacgcagac cacgtgtttg tcgcggccga cggtgacata
      901 agcggagcag agtgacgcat cgagcgcatc gtaagtcgca cccgcgacgc gtcgcacgag
      961 ctgttcgggt tcgagcgctc gcaacaagcc gcggccgatg tctgacagga acctgagctc
     1021 gcgattgctg ccgatcagcg cccactcgcg ctgcgacgtg cgcacgtgca ggctcacgcg
     1081 cgagagcaat tcaccgggcg ttgaaggttt ggttatgtag tcgtcggcgc cggccgtgaa
     1141 cgcctgcacc ttgcgtgctt catcgtcgct ttccgagagc gcgatgatgg gcaacttgct
     1201 ggtggtcggt tgagcacgga gtagtttgca aagcgcgagt ccatcgacgc ccggcatctc
     1261 gagatcgagc gccacgaggt cgcagcggac gcccttcaag acgcgcaaag ccgacgccgc
     1321 ttcgttcgcc gtgacgacac ggtacttcgc ggtctcgaag atctcgcgca accgttcgcg
     1381 ggccgcgtgg tcgtcatcaa caattaaaag ggtagcgttt tggttttcgg cgggcgatac
     1441 cattcctggc cacagattac acagattgaa actgtggctg caaggatttt aggcgactgt
     1501 gcgttccaac ctgtggctcg acttcatgcg gtacatcttt tcgtcggcgg agaccacgag
     1561 ctggtccagc gtgttgccgt cgatgccgaa cgtggcggtg ccgacgctga tgccgacgcg
     1621 cgcgtagcgg ttccggccga ccatcaatga aaacttctgt acggcgtttt cgatgcggcg
     1681 gcacagctcg tcgacttgcg aaccggccat ctcctgcacg agcgcgacaa actcgtcgcc
     1741 gccgtaacgc gcgaggaagt cgtattcgcg gagctggcct tcgatgatgt gggccacctc
     1801 gcgcaacatc ttgtcaccgg tcttgtgacc aaacgtatcg ttgacgctct tgaactcgtc
     1861 gaggtcgagc atcattacct gaaacgcgcg atccgtgcgg cgggctcttg ccgcctcctc
     1921 gtcaaatctc aatgaaaggt aacgcgcgtt tggcaatccc gtaagcggat cggtcaaggc
     1981 attcgactca gcctcggcgt gctgcatcgc gttgccgagc gcgtcggccg cgagacgcgt
     2041 cactgtctca agcaaacgca tgtgatcgtc cgtgtactga tcgagctcgc tcgaatagac
     2101 ggacagcgcg ccaagcaaca cgtcgtcttt gaacagcggc agcgacgcca tcgaacgata
     2161 cttgatgccg gcttcgggat tgatgtccgt gaaatcaaga ctcggatgaa gctggttcac
     2221 cggccgccgg ttcgccaaag cgaatcccgt cacgccttcg cccaacacga tgcaccgcga
     2281 cgcgagtttc tgcgcgttct tgccgacaac gtgacgcgca gtcgcgtagc ctttcgcgtc
     2341 gtcgtagaag taaacgacac acgtgtcgaa cggaacgacg tggcccacct tgtcgacaag
     2401 gatctcaagc gtgtgctcga tgttcagcga cgttccaaac gtacgcgcga tctcgtacag
     2461 cgcataaact tcacgatgcg ctttcttgat ctgatcgtaa gcgatgtacg aaccacgctc
     2521 gcgcgtctgg tccagatcta tttcgctcaa ctgaagcggc ggctcgggca agtggttaac
     2581 gggttggtgt tgcaagccca tcgcttcgat ctgcgactcg aaacgcggca ggtgtttgat
     2641 gaactgctcg accacaaccg gatcgaaatg aattcccgag ccgcgcaaca gcaacgccgt
     2701 cgcctcaccc aaagtcatgc cgcgccggaa cgggcggtct tcacgcaccg agtcgaaaca
     2761 atcgacgacc gagatgatgc gcgccgtgat cggaatct
//
LOCUS       DASWTX010001146         1893 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_125642, whole genome shotgun sequence.
ACCESSION   DASWTX010001146 DASWTX010000000
VERSION     DASWTX010001146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1893)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1893)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1893
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125642"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            181..1056
                     /locus_tag="VGD38_17475"
     CDS             181..1056
                     /locus_tag="VGD38_17475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729879.1"
                     /translation="MGSLTAIAFGLGGFGLIHDFDGSMGWVLFFLLPFVTGLATAIVT
                     DGKEVLFASLWIGAIACTAALIITRMEGWVCVLMSAPLITFSLGTGALTGMLIRHLLV
                     SMGAKHLVLLLTIGVLPFFLVAANKIEEPSRKTPRAETITNTLITDAPRELVWNQLKT
                     FDRIEGTKGLLMRIGLPVPVSCTMSGEGVGATRTCYFEEGHIAERVTEWNPPNSMKLE
                     ITEFDVPGRPWLSFQDASYELTTENGRTVLTRKTTIVSRLSPAWYWRPMEKIGVETEH
                     EYLFEEIKKKIERAK"
     gene            1058..1360
                     /locus_tag="VGD38_17480"
     CDS             1058..1360
                     /locus_tag="VGD38_17480"
                     /inference="COORDINATES: protein motif:HMM:NF024179.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P) transhydrogenase subunit alpha"
                     /protein_id="HEY0729880.1"
                     /translation="MTADTLISALYVFALAAFLGYQVISRVPPLLHTPLMSATNAISG
                     ISLVGSIVTAGANYNRVSTILGTIAVACATTNVVGGFVITDRMLKMFKRKDVAKKD"
     gene            1360..>1893
                     /locus_tag="VGD38_17485"
     CDS             1360..>1893
                     /locus_tag="VGD38_17485"
                     /inference="COORDINATES: protein motif:HMM:NF014307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase (Re/Si-specific)
                     subunit beta"
                     /protein_id="HEY0729881.1"
                     /translation="MEKIFIELSYLLASILFILGLKGLSHPETAKRGMHLAEFGMLMA
                     IIGTLLHHDIVSYTWIIVGLSIGSLVGLAMGLWVPMTAMPQRTALSHAFGAFAAALVG
                     ISEYFRHGGHLGKIEMSALGFEVMFGSLTTTGSLLAFAKLQGLVRGTPMTYKGQNVFN
                     MTLLAATAGIFIYLIFVP"
BASE COUNT          413 a          552 c          517 g          411 t
ORIGIN      
        1 cagatcgaca tgaacgacga cgtcgttgga ccatcgtgcg tgacgcacca ggggcaggtt
       61 gtgaaccaac gcgtagcagc aagtctttca gctactgcga acaagtagac aatgaacgca
      121 agcaacttca caccgcaacc cagcccgatc aacagattca gagtgttccg cggggtcctc
      181 gtgggctcac tgacggctat tgcattcggt ctcggaggct tcggactcat tcacgacttt
      241 gacggctcga tgggctgggt cctgtttttc cttttaccgt ttgtcaccgg actcgcaaca
      301 gccatcgtga ctgacggaaa agaagtgctc ttcgcatcgc tctggattgg cgccatcgct
      361 tgcacggcgg cgctcataat cacgcgcatg gaggggtggg tctgcgtatt gatgtcagct
      421 ccgctcatta cgttctcgct cggcacggga gcgctcaccg gaatgctgat ccggcatctc
      481 ctcgtttcca tgggagccaa acatctggtg ctgcttctca cgatcggcgt gcttcccttc
      541 ttcctcgtcg ccgcgaataa gatcgaagaa ccatcgcgaa aaacaccgcg cgcggaaacg
      601 atcacaaaca cgctcatcac cgacgcgccg cgcgaactgg tctggaatca actcaagacc
      661 ttcgatcgca tcgaaggcac gaaaggtctc ttgatgagga tcggtttgcc cgtgccggtg
      721 agttgcacga tgtcaggcga aggcgtcggc gcgactcgca cttgttactt cgaagaaggt
      781 cacatcgcag aacgcgtcac agagtggaac ccgccaaact cgatgaaact cgagatcacc
      841 gagttcgacg ttcccggccg tccgtggctg tcgttccagg acgcgagcta cgagctcaca
      901 accgaaaacg gccgcacagt tcttaccaga aagacgacga tcgtttcgcg tctctcaccg
      961 gcgtggtact ggagaccgat ggaaaagatc ggcgtcgaga ccgaacacga gtatctgttt
     1021 gaggaaataa agaaaaagat cgagagagcg aaatagtatg accgccgaca cactgatctc
     1081 cgcgctttac gtttttgcgc tcgctgcgtt tcttggttat caggtgatct cgcgcgtgcc
     1141 gccgttgctg cacacgccgc tcatgtctgc caccaacgcg atctcaggca tctcgctcgt
     1201 cggttcgatc gtcaccgcgg gagcaaatta caaccgcgtc agcaccatac tcggaacgat
     1261 cgcggtagcc tgtgcgacga caaacgtagt cggcggattc gtgatcacgg atcgcatgtt
     1321 gaagatgttc aagcgcaaag acgtcgcgaa aaaagactag tggaaaaaat cttcatcgaa
     1381 ctcagctacc tgctcgcttc gatcctgttc attctcggat tgaaagggtt gagccatccc
     1441 gaaacggcca aacgcggcat gcacctcgcc gagtttggca tgttgatggc catcatcggc
     1501 acgctgcttc atcacgacat cgtctcctac acgtggatca tcgtcgggct ttcgataggt
     1561 tcgcttgtcg gcctcgcgat gggcctgtgg gtgccgatga ctgcgatgcc gcaacgcacc
     1621 gcgctgtcgc acgcgtttgg cgctttcgcc gccgcgctcg tcggcatctc cgaatacttc
     1681 agacacggcg gacatctcgg caagatcgag atgagcgcgc tcggtttcga agtgatgttt
     1741 ggttcgttga caacgaccgg aagtctgctc gctttcgcaa agctccaggg tctcgtgcgc
     1801 ggaacgccga tgacgtacaa gggtcaaaac gttttcaaca tgaccctgct cgctgcaact
     1861 gccggcatct ttatctactt gatcttcgtg cca
//
LOCUS       DASWTX010001147         2752 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_234078, whole genome shotgun sequence.
ACCESSION   DASWTX010001147 DASWTX010000000
VERSION     DASWTX010001147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2752
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234078"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..706)
                     /gene="lpxA"
                     /locus_tag="VGD38_17490"
     CDS             complement(<1..706)
                     /gene="lpxA"
                     /locus_tag="VGD38_17490"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: protein motif:HMM:NF003657.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HEY0729882.1"
                     /translation="MPIHPTAIIEDNVEIGPDCEIAAYAVIKRFTRLGARNRIYEHAI
                     VGGEPQDVKFKGEESFLEIGDDNIIREFCTLHRASGAGEVTRIGSRNFFMVGVHVAHN
                     CVIGSDNIFANEVALAGHITIEDRVFLSNNVGAHQFVRMGRYAMVGGKSKIVQDVLPF
                     FITDGNPPRVRGLNTVGLTRAGFSEEARRPLKNAYRTLFKSAAPLVDVLQELEQIDDE
                     NVAHLVKFIRGSKRGFI"
     gene            808..>2752
                     /locus_tag="VGD38_17495"
     CDS             808..>2752
                     /locus_tag="VGD38_17495"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY0729883.1"
                     /translation="MFSDQFRRGETDKSKLAGVKGSRLISGLSDIAWKAFQSVNQRLP
                     EGESIRPNWAPGPLLKSYERTAPPLGFPRETDSLCPGCVKEVRNAVITGQIPLETLMH
                     EHPGEIKAQIVEANGQVVMRKTCPKHGEFEDVMSTDPAFLARIESLFFGRDFRAAEDK
                     NVHHHGTSNIKFGRGAVLTVDLTNRCNMMCNPCFMDANQVGYVHEPTFEDTKAILDRA
                     VSFKPRRQVIILFSGGEPTLSPYYLDAVAYAKKIGFYRILAATNGIRFAEDIEFCKAA
                     KAAGQHGVYLQFDGVSEEKNKHRGVGNLFDVKLRAIENLASVEIKVTLVVTIVNSINN
                     DAIGQIVEFAAKNIDKVQTIAFQPVSFTGRDEDISDELRTKWRYTLAGMTHDLKNQLN
                     GQIQPLRDWFPLSSYSAFTSVMDMLQGADAPWGWSSCNCHPNCGIFTLLVVNKQTGEF
                     KSLFEFFDYAQFMRDVAVITDTARGRKLSYAQLGMAIMRNFNAERAPEGFPISQILNL
                     FKPSSTNSNSDRNDRMKVQANNNANDNWRVLCVEGMWFQDLFNYDFRRTEMCVIPYGT
                     QEGEISFCAYNTGVGWRQIIENMHKTANLAEWYGEHGRHKVYAAGKSVPLSTTKHTLS
                     LPVIQAVLAEDAEPAPKVSPYLVE"
BASE COUNT          635 a          817 c          720 g          580 t
ORIGIN      
        1 ttataaaccc acgcttcgaa ccacggataa acttcaccag atgcgcaacg ttctcgtcat
       61 caatctgctc gagttcctga agcacgtcca ccagcggcgc cgccgattta aataacgttc
      121 gatacgcgtt cttcaacggg cgtcgcgctt cttccgaaaa ccccgcacgc gtcaacccaa
      181 cagtgttgag cccacgcaca cgcggcggat tcccgtcagt aataaaaaac ggcagcacat
      241 cctgcacgat cttcgacttc ccgccaacca tcgcataccg gcccatgcgc acaaactgat
      301 gcgcaccaac attattcgaa agaaacacac ggtcctcgat cgtgatgtgc cccgccaacg
      361 ctacttcatt cgcaaagatg ttgtcgctgc cgatcacaca gttgtgcgca acgtgcacac
      421 cgaccatgaa aaagttgcgc gaaccgatgc gcgtaacctc acccgcgcca ctcgcccggt
      481 gcagcgtaca gaactcgcga atgatgttgt cgtcgccgat ctcgaggaag ctctcctcgc
      541 ccttgaactt cacatcctgc ggctcgccgc cgacgatcgc atgctcgtaa atgcgattgc
      601 gcgcgcccaa ccgcgtaaaa cgtttgataa cggcatacgc cgcaatctcg caatccgggc
      661 cgatttcgac gttgtcttcg ataattgctg tggggtgaat aggcatttgc tggggtttga
      721 ggataatcgt gtcttgtgga tcctgcaaat cctgtttatc atgctcggcg gttttgtgtg
      781 gaatgagtca gcaggagacg ataaccgttg tttagtgacc agtttcgccg gggggaaaca
      841 gacaagagca aactggcggg agttaaaggc tcccggttga tctccggtct ctcagacatc
      901 gcctggaaag catttcagag cgttaaccaa aggcttcccg aaggcgaatc cattcggccc
      961 aactgggctc ctggtccact tctcaaatcc tacgaacgca ccgctccacc tttaggcttc
     1021 ccgcgtgaga cagacagtct ctgtcccggt tgcgtaaaag aagttcgcaa cgccgtcatc
     1081 accggtcaga ttccgctcga gaccctgatg cacgagcatc ccggtgaaat caaagcacag
     1141 atcgtcgaag ccaacggtca ggttgttatg cgcaagactt gcccgaagca cggcgagttt
     1201 gaagacgtga tgtcgaccga cccggcgttt ctcgcgcgca tcgagtcgct cttcttcggc
     1261 cgcgacttcc gcgctgctga agacaagaac gttcatcatc acggcacttc gaatatcaag
     1321 tttggacgcg gcgcggtgct gactgtcgat ctcaccaacc gctgcaacat gatgtgcaat
     1381 ccgtgcttca tggatgcgaa ccaggttggt tacgtacacg agccgacgtt tgaagacacg
     1441 aaagcgattc tcgatcgcgc cgtctcgttc aaaccgcgac gccaggtcat catcctcttc
     1501 tccggcggtg agccgacgct ctcgccttac tatctcgacg cagtcgccta cgcgaagaag
     1561 atcggtttct atcgcattct cgccgcgacc aacggcattc gcttcgccga agacattgaa
     1621 ttctgcaaag ccgcgaaggc tgccggccag cacggcgtgt acttgcagtt tgacggcgtc
     1681 agcgaagaga agaacaagca ccgcggcgtt gggaatttat tcgatgtgaa gttgcgcgcg
     1741 atcgaaaacc tcgcgagcgt tgaaatcaaa gtcacgctcg tagtgacgat cgtcaacagc
     1801 atcaacaacg atgcgatcgg acagatcgtc gagtttgccg cgaagaatat cgacaaggtg
     1861 cagacgatcg cgtttcaacc ggtttcgttc accggacgcg acgaagacat ctccgacgag
     1921 ctgcgcacga agtggcgtta cacgctcgcg ggcatgacgc acgatctgaa aaatcagttg
     1981 aacggacaga ttcaaccgtt acgcgactgg ttcccgcttt cgtcttactc agcgtttact
     2041 agcgtgatgg acatgttgca gggcgcagat gcgccgtggg gctggtcgtc gtgtaactgt
     2101 cacccgaact gcggcatctt cacgttgctt gtcgttaata aacaaacggg cgagttcaaa
     2161 tcgctgtttg agttcttcga ctacgcacag ttcatgcgcg acgtcgccgt gatcaccgac
     2221 accgcgcgcg ggcgcaagct ttcgtacgcg caactcggca tggccatcat gcgcaacttc
     2281 aacgccgaac gcgcgccgga aggttttccg atctcgcaga tcctcaacct gttcaaaccg
     2341 tcttcaacca attccaactc cgatcgcaac gaccgcatga aggtccaagc aaacaacaac
     2401 gccaacgata actggcgggt gttgtgtgtc gagggaatgt ggtttcagga tctgttcaac
     2461 tacgacttcc gccgcaccga gatgtgcgtg attccgtacg gcactcagga aggcgagatt
     2521 tcgttctgcg cttacaacac cggcgtgggt tggcggcaga tcatcgagaa catgcacaag
     2581 accgcgaacc tcgccgagtg gtatggcgag cacggccgcc acaaagttta cgccgccggc
     2641 aaatcagttc cgctatctac gacgaagcac acgttgagcc tgcccgtgat tcaggcagtg
     2701 ctcgccgagg atgctgaacc ggcgccgaag gtttcgcctt atctcgtcga ag
//
LOCUS       DASWTX010001148         2195 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_13755, whole genome shotgun sequence.
ACCESSION   DASWTX010001148 DASWTX010000000
VERSION     DASWTX010001148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2195
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13755"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(134..658)
                     /locus_tag="VGD38_17500"
     CDS             complement(134..658)
                     /locus_tag="VGD38_17500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729884.1"
                     /translation="MSDADPILTWNTLPARTRDLLAGKLVGLWNAPSDAEAFDSWALD
                     KKQAMLLLVDRIDAKDLWHLVTRVKNVYGEGGVGLEFEASPRIESTLSRRRDFTRRFA
                     NHKDTDGGFYEKERGTAVLHFLFQEGEPRRWYVHFDLYSPIHSPVSAVRHLRHEFLGK
                     IKPDWRMIAKHFST"
     gene            complement(651..989)
                     /locus_tag="VGD38_17505"
     CDS             complement(651..989)
                     /locus_tag="VGD38_17505"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HEY0729885.1"
                     /translation="MADDLEEGFETQEERRAHDRTRLIVDVFFDGQDVTGVASTKDIS
                     PGGLYLNTQAVIPQGAMLLVRIPFRPGTEVVCRAEVIYSEPGRGVGLRFRDVTDEGRA
                     VLEREVSTNV"
     gene            complement(1047..>2195)
                     /locus_tag="VGD38_17510"
     CDS             complement(1047..>2195)
                     /locus_tag="VGD38_17510"
                     /inference="COORDINATES: protein motif:HMM:NF025761.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circularly permuted type 2 ATP-grasp protein"
                     /protein_id="HEY0729886.1"
                     /translation="AIQKVKDAAVNDEQIVADLGLTDVERELVAIDPGYKAVSPTARL
                     DSFLTADRYSFVELNGESPAGIAYADAAYDIFSSLPVMKEFAKHYNVRPLYGRQFMLD
                     VLLSSYEEFLGRKPEQRPTIAIVDLPGVPTVSEFELFRDFFESTGYPSVICTPQELEF
                     SNNRLSVNGQQIDIVYKRLLVNEYLPVMQDYPALLNAYRARAICMVNSFRSKLIHKKA
                     LFAVLTNGLYASLFNEAELAAITAHVPWTRIVRDERADCRYEQIDLLDFIRKNSHRLV
                     LKPNDDYGGHGITIGWNVDQSEWDSAIEQALANGDYLVQERVPTARETFPALTQDGRV
                     EFAEQLVDLDPLLFNGKVGSAFTRLSYTELANVSSGGGMVPTYIVSQK"
BASE COUNT          439 a          639 c          627 g          490 t
ORIGIN      
        1 agcatcttgc cttcttcgag gatctcggcg acgtgcgaac gcagctcgcg cgtttgcgga
       61 tcgacgatct gaaattcctc ttcgataccc agcgtaaatt gatcgaacat aggggccttc
      121 ctggctatct ggtctaagta ctaaagtgtt tggcgatcat gcgccagtcg ggttttattt
      181 tgcccagaaa ttcatgtcgc aagtgtctca cggcgctaac cggtgaatga atcggactat
      241 agagatcgaa gtgcacgtac cagcggcgcg gttcgccttc ctgaaacagg aaatgcagga
      301 ctgccgtgcc gcgctccttc tcgtagaaac cgccgtccgt gtccttgtga ttggcaaagc
      361 ggcgcgtgaa gtcgcggcgg cgagataaag tcgattcgat acggggcgac gcttcaaact
      421 ccagcccgac accgccttca ccgtaaacgt tttttacacg cgttaccagg tgccacaaat
      481 ctttcgcgtc tatccgatcg accagcaata acattgcctg ttttttgtcg agcgcccagg
      541 aatcaaaggc ctccgcgtca ctgggcgcgt tccacaaacc taccagcttt cctgccaaca
      601 ggtctcgcgt tcgggccggt agcgtattcc acgtgagaat tggatctgca tcagacattt
      661 gtcgaaacct cccgttccag caccgcccgg ccttcgtcgg taacgtcgcg aaagcgcaag
      721 ccaacgccgc ggccgggttc gctgtaaatc acttccgcgc ggcacacaac ctcagtgccc
      781 ggacggaaag gtattcttac caggagcatc gcgccttgcg gaattaccgc ctgcgtgttg
      841 aggtagagcc cacccggact gatgtccttc gtgctcgcca cgccggtgac gtcctggccg
      901 tcgaaaaata cgtccacgat caggcgggtg cgatcgtgag ccctgcgctc ttcctgcgtt
      961 tcgaacccct cttcgagatc gtcggccacg gaatgctcct tctcaggaaa tccaagagcg
     1021 tttggcttga attgtaccct ttttcctcat ttttggctga cgatgtaggt cggcaccatg
     1081 ccgccaccgg agctcacgtt cgcgagctcg gtgtaggaca ggcgagtgaa cgccgaaccc
     1141 actttgccat taaacaggag tgggtcgaga tctaccagtt gttcggcaaa ctcgacgcgg
     1201 ccgtcttgag tcaacgccgg gaaagtctcg cgcgcggtag gcacgcgttc ctgaaccagg
     1261 taatcgccgt ttgcgagcgc ctgttcgatg gctgagtccc attcggactg gtccacgttc
     1321 cagccgatcg tgatgccgtg accgccgtag tcgtcgttgg gtttgagaac gaggcgatgg
     1381 ctgttcttgc ggatgaagtc cagcagatcg atctgctcgt agcggcagtc ggcccgctcg
     1441 tctcggacga tgcgcgtcca cggcacgtgc gccgtaatcg cggcgagttc ggcttcgttg
     1501 aagagcgacg cgtaaaggcc gttcgtcagt acagcgaaga gcgctttctt gtggatcagc
     1561 ttcgaacgga aactgttgac catgcagatc gcgcgcgcgc ggtacgcgtt gagcagcgcg
     1621 ggataatcct gcatgacggg caggtattcg ttaaccaaca gccgtttgta gacgatgtcg
     1681 atctgttggc cgtttaccga caggcggtta ttgctgaatt ccaactcctg cggcgtgcag
     1741 atcaccgaag gatagccggt gctctcgaag aagtctctga atagctcaaa ctcgctgact
     1801 gtcggcacgc ccggtagatc gacaatcgcg atcgtgggcc gttgctccgg tttgcgtcct
     1861 aagaactctt cgtacgaact gagcagcacg tcgagcatga actgtctgcc gtagagcggc
     1921 cgcacgttgt agtgtttggc aaactccttc atcaccggca gcgacgagaa gatgtcgtaa
     1981 gccgcgtctg cgtacgcaat gcccgcaggg ctctcgccgt tgagctcgac aaaactgtaa
     2041 cgatccgcgg taagaaacga atcgagccgc gcggttggcg agacggcttt gtaacccgga
     2101 tcgatcgcga cgagttcgcg ttcgacgtcg gtcaacccca ggtccgcgac gatctgctcg
     2161 tcgttaaccg cggcgtcttt cactttctga atggc
//
LOCUS       DASWTX010001149         8346 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_187031, whole genome shotgun sequence.
ACCESSION   DASWTX010001149 DASWTX010000000
VERSION     DASWTX010001149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8346)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8346)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8346
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187031"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..771
                     /locus_tag="VGD38_17515"
     CDS             <1..771
                     /locus_tag="VGD38_17515"
                     /inference="COORDINATES: protein motif:HMM:NF013706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEY0729887.1"
                     /translation="TRISHRSLNGPRYASVLGSAVFPLPADFNFERSAMGETVTSLPL
                     DEVKLLAPVAPSKVVCVGRNYREHAAELGNKMPDEPLLFLKAPSAVIASGDQIELPPP
                     SQQVEHEGELGVVIGRVTRKLSADENPLDYVFGYTCVNDVTARDLQRKDVQFTRGKSF
                     DTFCPVGPWIETDLDPSNADVTTRLNSEIKQQGNTADMAFPVAFLIKYISEIMTLYPG
                     DLIATGTPAGVSKLKDGDVVEVEVAGIGVLRNQVVNGS"
     gene            786..1436
                     /gene="fsa"
                     /locus_tag="VGD38_17520"
     CDS             786..1436
                     /gene="fsa"
                     /locus_tag="VGD38_17520"
                     /inference="COORDINATES: protein motif:HMM:TIGR00875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HEY0729888.1"
                     /translation="MKFFLDTANLNEIRNGMEMGLCDGVTTNPSLVAKESGVDFKQHI
                     AAICEIVKGPVSAEVTSQDTDGMIREGLEYSKIAPNVVIKCPLTRDGLRATRHLADQN
                     IKVNVTLCFSPAQAILAAKAGASFISPFLGRLDDVGENGLNLLQSIIEIYQNYSWKTE
                     VLAASLRHPIHVIEAARMGSDIATMPFKVVEQLFNHPLTDKGQAQFLADWAKSGRK"
     gene            1423..1884
                     /locus_tag="VGD38_17525"
     CDS             1423..1884
                     /locus_tag="VGD38_17525"
                     /inference="COORDINATES: protein motif:HMM:NF016085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF402 domain-containing protein"
                     /protein_id="HEY0729889.1"
                     /translation="MAESKQALEIAVRVLRYDGRERRRWAAQVVEQVGPLIVLDAVFD
                     EEIQHDLLGTIALGTVSKEYYWLDRWYNVFRFNERFYCNVTKPPVFDGSILTYVDLDI
                     DVLVESDYSYKILDLEDFENSSYPTELKDKALQSLEELVSLVETRSFPFNE"
     gene            1877..3445
                     /locus_tag="VGD38_17530"
     CDS             1877..3445
                     /locus_tag="VGD38_17530"
                     /EC_number="6.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013935707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HEY0729890.1"
                     /translation="MSKQQPKPSKSRLELLRERSAQAEQGGGEARVEKQHAAGKMTAR
                     ERIEFLLDEGSFEEFDKLVVHRSRDFGLDKQIYPGDGVITGHGLIDGRNVFVFAQDFT
                     VFGGSLSETHAEKICKVMDLAMKVGAPIIGLNDSGGARIQEGVVSLGGYADIFLRNTL
                     ASGVVPQISCIMGPCAGGAVYSPAITDFNVMVKDTSYMFITGPDVIKTVTHEEVTKEA
                     LGGALTHNTVSGVAHFAADSDEHALRIVRELLSFVPSNNMEDPPAIVASDPIDRTEPK
                     LNDMVPEASNQPYDIREVINAVVDDGYFFEVQELFAPNICVGFARLGGRAVGIVANQP
                     AYLAGVLDIAASVKGARFVRFCDCFNIPLVTFEDVPGFLPGVSQEHGGIITHGAKLLY
                     AFAEATVPKMTVITRKAYGGAYCVMASKHIRTDINFAWPSAEIAVMGAEGAVGILYRR
                     ELGEAQDKEAARKSRIAELEDKFANPYVAAERGFVDEVIEPSQTRPTLIRALSLLENK
                     RDKNPPRKHGNIPL"
     gene            complement(3455..4252)
                     /locus_tag="VGD38_17535"
     CDS             complement(3455..4252)
                     /locus_tag="VGD38_17535"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: protein motif:HMM:NF025034.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="retropepsin-like aspartic protease"
                     /protein_id="HEY0729891.1"
                     /translation="MPVRLRDERDGLVANAWINGEGPFAFAIDTGAGVSLISRRVVDR
                     ARLQVNKSRRTLVGGLSTSPIASNQEASLSGLSLGTPSNRISTKAVAAVVANLPGSID
                     GILDPTDVFSPLGYAVDLPNRQLSVFDPATRGVRMNQVPRGGAVVRWVGKERPFVRLS
                     DGGLALIDTGSGFGLALTDGRVVGSRSHADVENRQDLGGGRVQSQEIEPQRVSIGALV
                     LNGVPSDVLTGVAPGTPNILGRRALFPFKITFDPVARLISFEPTDRD"
     gene            complement(4395..4934)
                     /locus_tag="VGD38_17540"
     CDS             complement(4395..4934)
                     /locus_tag="VGD38_17540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729892.1"
                     /translation="MTNKLLPVALIAALIGGSVGALVMHRSQPASAEPLVAGQTTAAP
                     AVTEQQQANNELAQFNTAGEQTAYKTGFADGYAAASENAVNTTTAPATRRSTNRVVYR
                     NTGSRASSSRVYYDYQPKKRSFWDKHRDKLTVAIGTGAGAAVGGLIGGKKGAAIGALS
                     GAGGSALWTYKLRNRDRNR"
     gene            complement(5182..6474)
                     /locus_tag="VGD38_17545"
     CDS             complement(5182..6474)
                     /locus_tag="VGD38_17545"
                     /inference="COORDINATES: protein motif:HMM:TIGR00225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY0729893.1"
                     /translation="MSFRTKFILILLSATLTLYTVVGGLIATGAQQPANDPNAQLRIF
                     ESVLQHIQNDYVDEPNMDKVRAGALRGLAYGLDPYSTYLTPEQVRDYNAGNKNGVGIG
                     AELSQVASYLYIIAPMKGSPADQAGLNAGDIIEYIDNKATRDISLYDAKQLLNGPAGS
                     EVKLRVLRANSSPLTISVKRGSSRAPAAESRIEAGRIGILRINSFGDGDAAEVKARLQ
                     DLVKQGVQKIVLDMRDTAGGSLTEAASVANLFVKDGMIAQTIGREGKPLKSFNADPKE
                     AIFNGPVVALINTGTAGAAEVVASALLERNRGMVVGEKSFGAGTEQQLFQLRGGDGLL
                     LTTVKWATASGKTFLGEDRARSGVAPSVEVKTQETAEAVDPDELTGNDDDEIQKTEPG
                     TEKDKPAAAPAPKPAAEDLQLKKALELLKEKPAVQKAA"
     gene            6541..7014
                     /gene="ruvX"
                     /locus_tag="VGD38_17550"
     CDS             6541..7014
                     /gene="ruvX"
                     /locus_tag="VGD38_17550"
                     /inference="COORDINATES: protein motif:HMM:NF015607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEY0729894.1"
                     /translation="MNQHQARSKPEGPILALDLGEKLVGAAVSDDRLVTIKRLAPLKR
                     SNWKRLLQDVVTLIQRYDAQTVVIGLPLNLDGTSGDAAEKAQQIAINLARSIGQPVFL
                     QDERLTSVEAMGNLKAEGHKPGEIPALIDGEAAAMILRDFIQTDQERVPITPSSR"
     gene            7011..8096
                     /gene="mltG"
                     /locus_tag="VGD38_17555"
     CDS             7011..8096
                     /gene="mltG"
                     /locus_tag="VGD38_17555"
                     /inference="COORDINATES: protein motif:HMM:TIGR00247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEY0729895.1"
                     /translation="MKKLILLVLAVILLAGAATGAWVYRDLHAPVSHNKSGQYIEIPR
                     GTSPSAIIKKLTAEGVLKHEWPLKLYLKTSGKGSTLKAGEYDFASPISPLGVLAKLQT
                     GEHRLNRLTIIEGWTRWDIAKAMVQVPELRLDSEAQAIALMDNVSLIGDLDPKATNLE
                     GYLFPDTYEFSPETTPAELVEMMVKRFRDVWKPDWTERARSLSMTPREIVTMASIIET
                     EAKLAEERPLVASVIYNRLQKNIPLAVDSSVIYASKLEGKWRYDGKVYRSDIERRSPY
                     NTRIYAGLPPGPVASAGESSLKAALNPATTDYLFYVRNPDRDDGAHNFYNNGGDFETG
                     VQALRNWERQRDLEEQRKKRESSGQPR"
BASE COUNT         1777 a         2323 c         2450 g         1796 t
ORIGIN      
        1 actcgcattt cacatcggag tttgaacggc ccgcggtacg catccgtgct tggatccgcc
       61 gtcttccctc tcccggcgga cttcaacttc gaacgctcgg cgatgggtga aaccgtcacg
      121 agtctgccac tcgacgaggt aaaactatta gctcctgttg cgccctcaaa agtcgtctgc
      181 gttggcagaa actatcgcga gcacgcggcc gagctcggta acaaaatgcc tgacgagccg
      241 ctgttgtttt taaaagcgcc ctcagccgtg atcgcgtccg gagatcagat tgagctcccg
      301 ccgccatcgc agcaggtcga acacgagggc gagctgggcg tcgtgattgg acgcgttact
      361 cggaagctgt ctgcggatga gaacccgttg gattacgtgt ttggctacac gtgcgtgaac
      421 gacgtcaccg cgcgcgatct gcaacgcaaa gacgtgcaat tcacgcgtgg caaatcgttt
      481 gacacgttct gcccggtcgg gccgtggatc gagacggatc tcgatccgtc gaacgccgac
      541 gtcacgaccc gtcttaacag tgaaataaaa cagcaaggca acaccgccga catggcgttt
      601 cctgtagcct ttcttattaa gtacatctct gagatcatga cgttgtatcc cggcgatctg
      661 attgccaccg gaacgcccgc cggcgtttcg aagctgaagg acggcgacgt ggtggaggtg
      721 gaagtcgcgg gaattggggt tctgcggaac caggttgtta acggatctta atcaggagtt
      781 aggcaatgaa attctttctt gatacggcga acctcaacga gatacgcaat gggatggaga
      841 tgggactctg cgacggagtc accaccaatc cgtcgctggt tgccaaagag agcggcgtcg
      901 atttcaaaca gcacatcgca gcgatctgcg agattgtgaa aggcccggtg tcggctgaag
      961 tcacgagcca ggacacggac ggaatgattc gcgagggtct ggagtattcg aagattgctc
     1021 ccaacgtggt catcaagtgt ccgctcacgc gcgacggctt gagagctacg cgtcatctcg
     1081 cggaccaaaa catcaaggtc aacgtcacgt tgtgcttttc gccggcgcag gcgatcctcg
     1141 cggcgaaggc gggcgcttcg tttatcagtc cattcctcgg ccgcctcgac gacgtcggcg
     1201 agaacgggct gaacctgctg caaagcatta tcgaaatcta tcagaactat tcgtggaaga
     1261 cggaagtgct ggcggcgagt ttgcgccacc cgatccacgt gattgaagct gcgcgaatgg
     1321 gcagcgacat cgcgacgatg ccgttcaagg ttgtcgagca gttgttcaat catccgttga
     1381 ctgacaaggg acaggcccaa ttcctggctg actgggcgaa gagtggcaga aagtaagcag
     1441 gcgctcgaga tcgctgttcg cgtgttgagg tacgacggcc gtgaacgccg gcgctgggcc
     1501 gcgcaggtcg tcgaacaggt tggaccacta attgttctgg acgcggtttt tgacgaggag
     1561 atccaacacg atctcctcgg cacaatcgcg ttgggaaccg tcagcaagga atactactgg
     1621 ctcgatcgct ggtacaacgt ctttcgcttt aacgagcggt tttattgtaa cgtaaccaag
     1681 cccccggttt ttgacggttc aattctcact tacgttgatc ttgatattga tgtcctggtc
     1741 gagtctgact actcctacaa gattctcgac ctcgaagatt tcgaaaactc ttcttatcca
     1801 accgagctga aggacaaggc cctacagtcg ctggaagaat tagttagtct ggttgaaacg
     1861 agatcgtttc cctttaatga gtaaacaaca accgaaacca tccaaatcac gactcgagtt
     1921 actgcgcgag cgcagcgcgc aagcggagca aggcggcggc gaagcgcgcg tcgagaaaca
     1981 gcacgcggcc ggaaagatga ccgcccgcga gcggatcgaa tttctgctcg acgaaggatc
     2041 gtttgaagag tttgacaagc tcgtcgtgca tcgttcgcgc gacttcgggc tcgacaagca
     2101 gatctatccc ggcgacggcg tgattacggg tcacggtttg atcgatggac ggaacgtttt
     2161 tgtgttcgcg caggacttca ccgtctttgg cggttccctt tccgaaacgc atgccgagaa
     2221 gatctgcaaa gtgatggatc tggcaatgaa agtcggcgcg cccatcatcg gcttgaacga
     2281 ttcgggtggc gcgcgcattc aggaaggtgt tgtcagtctc ggtggttatg ccgacatctt
     2341 tttgcgtaac acgctcgcca gcggggtcgt gccgcagatc agttgcatca tgggaccatg
     2401 cgcgggcggc gcggtttaca gtccggcgat cacggatttc aacgtgatgg tgaaggacac
     2461 gtcgtacatg ttcatcaccg gtccggacgt gatcaagact gtcacgcacg aagaagtcac
     2521 gaaggaagca ctcggcggcg cgttgacgca caacacggtt tccggtgtcg cgcattttgc
     2581 ggccgattct gacgagcatg ctttgagaat cgtgcgcgag ctgttgtcgt ttgttccgtc
     2641 aaacaacatg gaagatccgc cggcgattgt cgcgagcgat ccgatcgatc gcaccgagcc
     2701 gaagctgaac gacatggttc cggaagcgtc gaaccagccg tacgacattc gcgaagtcat
     2761 taatgccgtt gtcgacgatg gttatttctt cgaagtgcag gaactgtttg cgccgaatat
     2821 ctgcgtcggg tttgcacggc tcggcgggcg cgcggtcggc atcgttgcca atcagcctgc
     2881 gtaccttgcg ggcgtgctgg atatcgcggc gtcggtgaaa ggtgcgcggt tcgtgcggtt
     2941 ctgtgactgt ttcaacattc cgctcgtgac gtttgaagac gtgccgggat ttctgccggg
     3001 cgtttcgcag gaacacggcg gcatcatcac ccacggcgcg aagctgctgt atgcgtttgc
     3061 ggaagcgacc gtgccgaaga tgaccgtgat cacgcgcaaa gcctacggcg gcgcttactg
     3121 cgtcatggct tcaaaacaca tccgcacgga catcaatttc gcgtggccat ccgcggagat
     3181 tgctgtgatg ggagctgaag gcgcggtcgg cattctttac cggcgtgagc ttggcgaagc
     3241 gcaggacaaa gaggctgcgc gcaaatcgcg aatcgccgag cttgaagaca agtttgcgaa
     3301 tccttacgtc gccgccgagc gcggctttgt cgacgaagta atcgagcctt cacagacgcg
     3361 cccgacactc atccgtgctt tatcgctcct cgaaaacaag cgcgacaaaa acccgccgcg
     3421 caagcacggt aacattccac tttaaacgag aaacttaatc gcggtcggta ggttcgaacg
     3481 aaatcagccg tgcgaccgga tcgaaagtga tcttgaacgg aaacagcgcc ctgcgtccga
     3541 ggatgtttgg tgtgcccggc gccacgccgg tcaagacgtc tgacggaact ccgttgagca
     3601 ccaacgcgcc gatgctcacg cgctgcggtt cgatctcctg cgactgaacc cgtccgccgc
     3661 ccaggtcctg ccggttctca acgtcagcgt gactacgact gccgaccacg cgcccgtcag
     3721 tcaacgccaa accaaatccc gatcccgtgt cgatgagcgc gagaccccca tcgctgagac
     3781 gcacaaacgg gcgctccttc cctacccagc gcacgaccgc gccgccacgc ggcacctgat
     3841 tcatccgcac ccctcgcgtc gccggatcga agacactcaa ctggcggttt ggtaaatcaa
     3901 cggcatagcc gagcgggctg aaaacgtccg tcggatcgag tatgccgtca atcgaacccg
     3961 gaagattcgc gacgactgcc gccacggctt tggtgctgat tcgattactg ggcgtgccaa
     4021 gcgacaggcc cgaaaggctg gcttcctgat ttgaagcgat aggtgaagtg ctcagcccgc
     4081 cgacgagtgt gcggcgtgac ttgttcacct gcaaacgtgc gcggtcgacg accctccggc
     4141 tgataagcga aacaccagct ccggtgtcga tcgcgaatgc aaacgggcct tcgccgttga
     4201 tccacgcgtt cgctaccaag ccgtcacgct cgtcgcgaag ccttacaggc accacggacg
     4261 aagcggattg aggctgcaaa atttgatggg cgattcctgt tttaggaacc gcccatgcaa
     4321 ctgttgcaac actcagagtg attagagcga tagcaagttt agctttgctc acgactccag
     4381 actccactaa gcaattagcg gtttcggtcg cgattgcgca gcttgtatgt ccacaacgcg
     4441 gagccgccgg cacccgacag cgcaccaatc gccgcgccct tcttgccacc gatcaatcca
     4501 ccgactgccg cgccggcgcc tgtgccgatc gctaccgtca gtttgtcgcg gtgcttatcc
     4561 cagaaacttc gtttcttcgg ctgatagtcg taatagacgc gcgaagaaga agctctcgat
     4621 ccggtgttgc gatagacgac gcggttggtg gagcgtctcg ttgcgggcgc ggtcgtcgtg
     4681 ttgacggcgt tctcagaagc cgctgcgtaa ccatccgcaa acccggtctt gtaagctgtc
     4741 tgttcaccgg cagtattgaa ctgcgccaat tcgttattcg cctgctgctg ctcagttaca
     4801 gcgggagcgg cagttgtttg ccccgctact aacggttcag ccgatgccgg ctggctgcgg
     4861 tgcattacca acgcgccgac agagccaccg atgagggctg cgattagggc aactggaaga
     4921 agtttgtttg tcataatcat cgctctggtt ctccttgaaa aatatccaag tgctacaagc
     4981 acgcagtcgc atgtcgcaag agctattcca atgtcgtcgg ggaaagtatt acgggccggg
     5041 ttcgggcggg attgtagcag ttacgccagt aaaaatgggc ttcgcaagga atttgcaagc
     5101 gaagcccaac agtttgtaat ggtcttattc gattttgtgt acccgatatc gaagcttgtg
     5161 tattcgatat gggcagctac gttaagcggc cttctgaaca gcgggcttct ctttcagtag
     5221 ctcgagcgct ttcttgagct gaagatcctc ggccgctggt ttcggcgccg gcgctgctgc
     5281 gggtttgtcc ttttcagttc ccggctcagt tttctgaatc tcatcgtcgt cgttgccggt
     5341 cagttcatcg ggatcgactg cttccgcagt ttcctgggtc ttgacttcaa ctgacggcgc
     5401 cacaccggag cgtgcgcggt cttcgccgag gaatgtcttg ccactggccg ttgcccactt
     5461 caccgtggtc aacaagagac cgtcaccacc gcgtaactga aacagttgct gttcggtgcc
     5521 ggcgccaaag cttttctcgc cgactaccat tccgcggttc cgttcgagca gtgctgaagc
     5581 aacaacttcc gccgcgcccg cggtgccggt gttgataaga gccacgaccg gaccgttgaa
     5641 aatcgcttcc ttcggatcgg cgttgaacga cttcaggggc ttcccttcgc gtccgatcgt
     5701 ttgcgcgatc atgccgtctt taacgaagag gtttgcgact gaggcggctt cggttaacga
     5761 accaccggca gtgtcgcgca tgtcgagcac gatcttctgc acgccctgct tcacgagatc
     5821 ctgcaagcgg gctttgactt cagcggcgtc gccatcgcca aagctgttga ttctcaggat
     5881 gccgatacgg cctgcttcga tacgtgattc tgccgcaggc gcgcgcgacg agccgcgctt
     5941 cacgctaatc gtgagtgggc tggagttcgc acgcaggacg cgaagtttaa cttcgctgcc
     6001 ggccgggccg ttgagcagtt gcttcgcgtc gtagagcgag atgtcgcgag tggccttgtt
     6061 gtcgatgtat tcgataatgt cgccggcgtt cagacctgcc tggtcggcgg gcgagccctt
     6121 catcggcgcg atgatgtaga gatacgacgc gacctgcgag agttcagcgc cgataccgac
     6181 gccgttcttg tttccggcgt tgtagtcacg cacctgttcc ggcgtcaggt aggtcgagta
     6241 tggatcgagt ccgtaagcaa ggccgcgcag ggcgccggct cgaactttat ccatgtttgg
     6301 ctcatctacg taatcgttct gaatgtgctg cagcacactt tcaaaaatcc gcagttgtgc
     6361 gtttggatcg ttcgcgggtt gctgggcgcc ggtagcaatc aaaccaccga caaccgtgta
     6421 cagcgtgagt gtcgctgaca gcaggatcag gatgaacttg gtacgaaatg acatctactt
     6481 acctcttgga ttacgtttag agccaaagat cgggaacgcg agtcgtatga tacaggcagc
     6541 atgaaccagc atcaagcacg atcaaaacct gaagggccca ttttagcgct cgatttgggc
     6601 gaaaaactcg tcggcgccgc tgtgtcggat gacaggctcg tcacgattaa acgacttgca
     6661 ccactcaagc gctcgaactg gaagagactg cttcaggatg tcgtgacttt gatccagcgc
     6721 tatgacgcgc aaaccgtagt gattggtttg ccgctgaatc tcgatggcac gtccggcgac
     6781 gccgccgaaa aagcgcagca gatcgcgata aatctggcgc ggtccatcgg gcagccggtc
     6841 tttttacagg atgaacgctt gacttccgtg gaggcgatgg ggaatttaaa ggccgagggg
     6901 cacaagcccg gcgaaatacc tgccctgatc gacggcgaag cggcggcaat gatccttcgc
     6961 gactttattc agacagatca agaaagagtc ccgatcaccc ccagttcacg atgaaaaaac
     7021 taatacttct ggtcctggca gtaatcctgt tggcaggtgc ggctaccgga gcgtgggttt
     7081 acagggattt gcacgctccc gtcagtcaca acaagagtgg acagtacatc gaaatcccgc
     7141 gcggtacttc cccgtcggcg atcatcaaga aactgactgc tgaaggcgtg ctcaagcacg
     7201 agtggccgct gaagctttac ctgaagacca gcggcaaagg ttcgacgttg aaagccggcg
     7261 agtacgactt cgcttcgccc atctcgccgc tcggcgtgct cgcgaagctg caaacgggtg
     7321 aacaccggct taatcgcctc acgatcatcg agggctggac gcgttgggac atcgcgaagg
     7381 cgatggttca agtgccggag ttgcgcctcg atagtgaagc tcaagcaata gctttaatgg
     7441 ataacgtgag cttgattggc gatctcgatc cgaaggccac gaacctcgag ggttatctct
     7501 tccctgacac gtatgagttt tcacctgaga cgacgccggc ggaactggtg gagatgatgg
     7561 tgaagcgttt tcgcgacgtt tggaaaccgg attggactga gcgcgcgcgc agtttaagca
     7621 tgacgccgcg cgagatcgtg acgatggcgt cgatcattga gacggaagcg aagctcgcgg
     7681 aagagcgtcc gctggtcgcg tcggtgatct acaaccgttt gcaaaaaaat attccccttg
     7741 cggttgactc gagcgtgatc tacgcatcga agctggaagg aaagtggcgt tacgacggaa
     7801 aggtttatcg cagtgacatc gaacgccgct cgccgtacaa cacgagaatc tatgcggggc
     7861 tgccgccggg accagttgct tcggcgggcg agagctcttt gaaggccgcg ctgaatcccg
     7921 cgaccaccga ctatttgttt tacgtgcgca accccgatcg cgacgacggc gcgcacaact
     7981 tctacaacaa cggtggcgac tttgaaacgg gcgttcaggc gttgcgcaac tgggagcgcc
     8041 agcgcgatct cgaagagcag cgaaagaagc gcgaaagctc cggtcagccg cggtaaactg
     8101 tcggtgtctt tacgccgaac gccgaaggcg ttgacgagtt tcagcccagg gttgcttcaa
     8161 ccctgggtgt ggcgttcaga aaattactac gctgaaagcg ttcgcgagat gcgccactcg
     8221 ccaacgcttt cagcgttggt gccatggcta ttcgttctgt cccagggttg tcgtaaccgc
     8281 caaccctgat gttatgaagc agcgcctccg ttcgtgagtg ctagactcac gagcagctct
     8341 gttgac
//
LOCUS       DASWTX010001150         1635 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_209086, whole genome shotgun sequence.
ACCESSION   DASWTX010001150 DASWTX010000000
VERSION     DASWTX010001150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1635
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209086"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1097)
                     /locus_tag="VGD38_17560"
     CDS             complement(<1..1097)
                     /locus_tag="VGD38_17560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729896.1"
                     /translation="MLFLETKSLNHSVEGDARTTLLQELQDRGLTPLIRSARLRFFED
                     VLLRADRISELETALASYTDTTLDEPFVRGDVFCFHDYVLFLLFEDDDTLRAGIVYEP
                     RTQEPFRKLDSFCQDVRLMLLTDENRDRLPQWESGKHTMPQGFRTFVEKQDADSLYTS
                     LRKETMSKRILAASKLEDERARVFLRTARNAHEEGYAAKLLTGNTDSAHVPIQRLEDV
                     GLVEREVQISCRKTGHALFRLPNPHALAVVTVSDATCSECGAPVADENVEEVIAPTQL
                     ASSLLEDGSWLVSRIHFLLREMGVPEREIAVGPSEGTGYGQMMANICGESFLIVTRDG
                     DLTPAFARWAIDLEIDTEASHLVIVATGRIH"
     gene            complement(1120..>1635)
                     /locus_tag="VGD38_17565"
     CDS             complement(1120..>1635)
                     /locus_tag="VGD38_17565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729897.1"
                     /translation="ALQLETTAAPIPVLSTQPEPLALPPAPPSALRQRALFFMAAAVL
                     IGVGLSTVIAVTGGFSAANPPVVAAEAPKPIIQQNPSPTSVSSVLPTSPAKPKPRPKP
                     TAEKTDRKEQPISVVMQIENGRVLKASIANPKPGRESYEALALRIARQRRYAPTVSGG
                     QTVTIAVSPKE"
BASE COUNT          313 a          472 c          509 g          341 t
ORIGIN      
        1 ttatggatgc gtccggtggc gacgatgacg aggtgcgaag cctcggtgtc gatctccagg
       61 tcgatggccc aacgcgcaaa cgcgggcgtc agatctccat cacgcgtcac gatcagaaac
      121 gattcgccgc aaatgttcgc catcatctgg ccgtagccgg tgccttcgga tggtccaacc
      181 gcgatctcgc gctccggcac gcccatctca cgcaacaaaa agtgaatgcg gctcacgagc
      241 cacgaaccgt cttcgagtaa cgacgacgcg agttgcgtcg gcgcgatcac ctcttcgaca
      301 ttctcatcag ccaccggcgc gccacactcg ctgcacgtcg catcactcac cgtcaccacc
      361 gcgagtgcgt gcggattcgg caaacgaaac agcgcgtgac ccgtcttgcg acaactgatc
      421 tgaacttcgc gttcgacaag cccgacgtct tcaagccgct ggatcggcac gtgcgccgag
      481 tcagtgttcc cggtcaacag cttcgctgcg taaccttcct cgtgcgcgtt gcgcgcggtg
      541 cgcagaaaca cacgcgcgcg ttcgtcttcc agtttcgaag cggcaagaat gcgtttgctc
      601 atcgtttcct tgcgcaaact cgtgtacagc gaatcggcgt cctgcttttc gacaaacgtg
      661 cggaagccct gcggcatcgt gtgcttgccc gactcccatt gcggcaaacg atcgcggttc
      721 tcatccgtga gcagcatcag tcgaacgtcc tggcagaacg agtcgagctt gcgaaacggt
      781 tcctgcgtgc gcggctcgta gacgatgccc gcgcgcaatg tgtcgtcgtc ctcgaaaagc
      841 agaaacagaa cgtagtcgtg aaaacagaac acgtcgccgc gcacgaaagg ctcgtcgagg
      901 gtcgtgtcgg tgtatgaggc gagtgctgtt tccaactccg aaatgcgatc ggcgcggagc
      961 agcacgtctt cgaagaagcg cagacgcgcg gaacggatca gcggcgtgag gccgcggtcc
     1021 tggagttcct gcaacagtgt cgtgcgagcg tcgccttcga ctgagtgatt cagagatttg
     1081 gtctcgagaa ataacatcgg ggcgcctttc gttaacggtc tactctttgg ggctgacagc
     1141 gatcgtgacg gtttggccgc cgcttactgt tggcgcgtag cggcgttggc gtgcgatacg
     1201 cagcgcgagc gcttcgtaac tttcgcggcc gggttttggg tttgcgatcg aggcttttag
     1261 gacgcggccg ttttcgatct gcattacgac gctgatcggt tgttcttttc gatccgtttt
     1321 ttccgcggtc ggttttggcc ggggtttggg cttcgcagga gaagtgggta acacagatga
     1381 aacggacgta ggagagggat tttgttgaat gattggtttg ggcgcttcag cagcaacgac
     1441 cggaggattt gcggcgctga aaccacctgt gactgcgatc acagttgaga gtccgacgcc
     1501 gatcaggacc gcggccgcca tgaagaacaa cgcacgctga cgcaacgctg aaggcggcgc
     1561 cggcggtagc gcgagcggct ctggttgcgt gctgagcacc ggtatcggcg cggcagtcgt
     1621 ttcgagctgt agcgc
//
LOCUS       DASWTX010001151         4162 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_320574, whole genome shotgun sequence.
ACCESSION   DASWTX010001151 DASWTX010000000
VERSION     DASWTX010001151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4162
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_320574"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1597
                     /locus_tag="VGD38_17570"
     CDS             <1..1597
                     /locus_tag="VGD38_17570"
                     /inference="COORDINATES: protein motif:HMM:NF020039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HEY0729898.1"
                     /translation="PIVIDLGSVDGLRSVKGEWRYSDTKIVETSFRGPGPDRQPTGAP
                     VKTYDYTPHAGGANFDDSKWEVISPTTLDQRRGKGRLGFNWYRLKLTIPDRIGDFDPT
                     GSTAVFETSLDDYAEIWVDGELSRAAGQSGGSVIAGWNAKNHLIVGRNVKPGQQIQLA
                     IFGVNGPLSNPPTNYIYIRYARVAFHKTDPGPLALTPSEVNVDVVRNDPAIDEIVGPN
                     PKVFKLAEGFQFTEGPVWVNKDGGYLLFSDPNANTIYKYAPNGAQDGKLEVFRTPSGY
                     SGADVAEYGQPGSNGLTLDRQGRLTINQHGNHRVVRDENDGTQTVLADSFQGKRLNSP
                     NDLVYRSDGTLFFTDPPFGFPKFFNDARKQLPFSGVFSIYNGKLQLVSKDLTGPNGIA
                     LSPDEKYLYVGNWPRSLTGQELRKEDEAVNEIGDKHKAIMRYEVQPDGTLKNGKLFFD
                     FTNAPGEDGLDGIKVDQKGNLYVSAPGGLWVISPEGKHLGTIITPKHAHNFAWGDADG
                     TTLYLAARSGLYRIRLNVAGVRP"
     gene            complement(1571..2494)
                     /locus_tag="VGD38_17575"
     CDS             complement(1571..2494)
                     /locus_tag="VGD38_17575"
                     /EC_number="1.1.1.169"
                     /inference="COORDINATES: protein motif:HMM:NF005091.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HEY0729899.1"
                     /translation="MRIAVFGTGGVGGYFGGRLAQAGNDVTFIARGEHLRAIKASGLR
                     VDSVAGDFIVFPAKATDDVGEVGEVDLVVVGVKAWQVPEAAAAMNPLVGPGTTVVPLQ
                     NGVEAVSQLVDQLGSENVIGGLCRIVSFVVGPGHIRHAGYNASVIIGELDNSRTDRIV
                     RIEQAFKDASVEISIAPDIQIALWTKFLFIVSYSGVGAMADAPAGVIRKDPKWRALMR
                     QAMEEIYTLAQARGIKLSADSVDSVMAGVDNLSDDATSSMQRDIAAGKPSELEAQNGA
                     VVRMARETGVDVPTHTLIYETLRSRTHAGNV"
     gene            2588..3088
                     /locus_tag="VGD38_17580"
     CDS             2588..3088
                     /locus_tag="VGD38_17580"
                     /inference="COORDINATES: protein motif:HMM:NF021996.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DM13 domain-containing protein"
                     /protein_id="HEY0729900.1"
                     /translation="MSRRLLVVLALAIFAVGAWYAFRPERLFINQKVNEQFPTASAAM
                     SNKLASGQFRSAAHETKGTATVFQLADGKKTLRLTDFATSNGPDVHVYLVAAGDAKDN
                     DTVTQAGFIDIGTLKGNIGDQNYELPADADLAKYRSVTIWCKRFGVNFGTAPLMDESM
                     QSMNMQ"
     gene            3111..>4162
                     /locus_tag="VGD38_17585"
     CDS             3111..>4162
                     /locus_tag="VGD38_17585"
                     /inference="COORDINATES: protein motif:HMM:NF012935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HEY0729901.1"
                     /translation="MTSNNHYDVIIIGTGAGGGTLAYKLAPSGKKILLLERGDYVPRE
                     KDNWSTRAVNLEAKYNTKEAWRDSDGKELHPHTNYFVGGNTKFYGAALFRLRKEDFGE
                     IRHHGGISPAWPISYDELEPYYTEAEHLYHVHGNRGEDPTDPWASAPYKYAAVSHEQR
                     IQHLSDDLERAGLKPFHVPLGIRLDEKNARKSLCIRCNTCDGHPCLIGAKSDAQTICV
                     DPALQHDNVSLVTNAKVMRLETNGNAREVSKVIVERNGAREEYSADIIVVSCGAVNSA
                     ALLLRSANDSHPNGLANGSDVVGRHYMGHINSVLMALSKCPNPTVFQKTLAINDFYFG
                     SKDWDYPMGHISFVGKL"
BASE COUNT          947 a         1238 c         1167 g          810 t
ORIGIN      
        1 accgatcgtg atcgatctcg gatcggtcga cggtttgcgg tcggtcaaag gcgagtggcg
       61 ctacagcgat acgaagattg tcgaaacgag ctttcgcgga cccggaccag acaggcagcc
      121 cacgggcgcg cctgtcaaaa cctacgacta cacgccgcac gcgggcggcg cgaacttcga
      181 cgattcgaag tgggaagtca tcagtcccac gacgttggac cagcggcgtg gcaagggacg
      241 gttgggcttt aactggtatc gtctcaagct gacgattccc gatcgcatcg gcgatttcga
      301 tccgaccgga tctacggccg tgttcgaaac gtcgctcgac gattatgccg agatttgggt
      361 cgacggcgag ttgtctcgcg ccgccggcca atccggcggg tccgtaatcg caggttggaa
      421 cgcgaagaat cacctgattg tcggccgcaa cgtgaaaccg ggccagcaga ttcagctcgc
      481 gatcttcggc gtcaatggcc cactttcaaa cccgccgact aattacattt acattcgtta
      541 cgcccgagtc gcgtttcata agaccgaccc tggtccactg gcgttgacgc cgagtgaagt
      601 gaatgtcgac gtcgtgcgca acgatccggc gatcgatgag atcgttggac cgaatccgaa
      661 ggttttcaag ctcgctgaag gtttccaatt cactgaaggt ccggtttggg tcaacaaaga
      721 cggcggctat ctgctgttca gcgatccgaa tgcaaacacg atttacaagt acgcgccgaa
      781 tggcgcgcag gacggcaagc tcgaagtgtt tcgcacgccg agtggctatt cgggcgcgga
      841 cgtggccgag tacggccagc ccggatcaaa cggcctgaca ctcgatcggc aaggacgtct
      901 cacgatcaat caacacggca atcatcgcgt tgtcagagac gaaaacgacg gcacgcaaac
      961 cgtgctcgcc gacagctttc agggcaaacg gctgaacagc ccgaacgatc tcgtctatcg
     1021 atctgacggc acgctcttct ttaccgatcc gccgtttggt tttccgaagt tcttcaacga
     1081 cgcgcgcaag cagcttccgt ttagcggcgt cttttcaatc tacaacggca agttgcagct
     1141 cgtgagcaag gatctcactg gtccaaacgg catcgcactc tcgccggatg aaaagtatct
     1201 gtacgtcggc aactggccgc gctcgctcac gggccaggag ttgcgcaagg aagacgaggc
     1261 cgtaaacgag atcggcgaca agcacaaagc gatcatgcgt tacgaagtac agccggatgg
     1321 aacgctgaaa aacggaaaac tgtttttcga cttcacgaac gcgcccggtg aagacggtct
     1381 cgacggaatc aaggtcgatc aaaagggcaa tctttacgtg tccgcgcccg gtggcctgtg
     1441 ggtgatctca ccggaaggca agcacctcgg cacgatcatc actcccaagc atgcgcacaa
     1501 ctttgcgtgg ggcgatgctg acggcacgac gctttatctc gccgcccgct cgggtctgta
     1561 tcgcatcaga ctaaacgttg ccggcgtgcg tccgtgatcg cagggtctcg taaatgagcg
     1621 tatgtgttgg tacgtcaacg ccggtttcac gcgccatacg taccaccgcg ccgttttgcg
     1681 cttcgagttc ggaaggtttg ccagccgcga tgtcacgttg catcgaactg gttgcatcgt
     1741 ccgacaggtt gtcgacaccg gccatcaccg aatcaactga atctgccgac agcttgatcc
     1801 cgcgcgcctg ggccaacgtg taaatctctt ccattgcctg gcgcatcagc gcgcgccact
     1861 tcggatcttt gcgaatcact ccggcaggcg cgtcggccat cgcgccaacg ccactgtaag
     1921 acacgataaa gagaaatttg gtccatagcg caatttgaat atccggcgcg atgcttatct
     1981 ccacactagc atccttgaac gcttgctcga tcctgacgat gcgatcggtc cggctgttat
     2041 ccagctcgcc gatgatgacc gacgcgttgt aacccgcgtg tcggatgtgt ccgggaccga
     2101 cgacaaagct gacgatcctg caaagtccgc cgataacgtt ctccgagccg agctgatcga
     2161 cgagctgcga caccgcctca acgccattct gcaaaggaac gaccgtcgtg cctggtccaa
     2221 cgagcggatt catcgcggcc gcggcttcag gcacctgcca cgctttaaca ccgacaacaa
     2281 cgagatcgac ttcgccgact tctccaacat catccgtcgc cttcgccgga aacacgatga
     2341 agtctccagc cacactatca acccgcagcc cactcgcctt gatcgcccgt aagtgctcgc
     2401 cgcgagcaat aaacgtgacg tcgttacccg cctgcgcgag gcgcccgccg aagtacccgc
     2461 caacgccacc agttccaaaa actgcaattc gcatgattct caaaagtccc gtgtaaggaa
     2521 acgcccgtgc gctcgactaa ccagtcgtag ttacgaaatc aaacgcaatc caaggagagt
     2581 ttaacttatg tcgagaagat tactggtggt cctggcgctc gcgatttttg cggttggcgc
     2641 gtggtacgcg ttccggcccg agcgtctctt catcaaccag aaagtcaacg aacaatttcc
     2701 gaccgcttca gcggcgatga gcaacaagct cgcaagcggg cagtttcgca gcgccgctca
     2761 cgagaccaag ggcactgcga ccgtgtttca actcgcagac ggaaagaaga cgctgcggct
     2821 gacggacttc gctacgtcga atggtccgga cgtgcacgtg tatctcgtcg cagccggcga
     2881 cgcgaaagac aacgacacgg taacgcaagc gggcttcatc gatatcggca ctctgaaagg
     2941 aaacatcggc gatcagaatt acgagctgcc ggccgatgcg gacctcgcga agtatcgctc
     3001 agtcacgatc tggtgcaagc ggttcggtgt gaacttcggc acggccccgc tgatggacga
     3061 gtcgatgcag tcaatgaaca tgcagtaact ccagcgatcg gagtgtcatc atgacgagca
     3121 acaatcacta cgacgtaatc atcatcggca caggcgcggg cggcggcacg ctggcttaca
     3181 agctcgcgcc ttcgggcaag aagatcctgc tgctcgaacg cggcgattac gtcccgcgcg
     3241 aaaaggacaa ctggagcacg cgcgccgtaa atctcgaggc gaagtacaac accaaagagg
     3301 cgtggcgcga cagcgatggt aaagagctgc acccgcacac caactatttc gtcggtggca
     3361 acacgaagtt ttacggcgcg gcgctgtttc gattgcgcaa ggaagacttc ggcgagattc
     3421 gtcatcacgg cggcatctcg cccgcgtggc ccatcagcta cgacgagctg gaaccgtatt
     3481 acacggaagc cgaacatctc taccacgtgc acggcaatcg tggcgaggat ccgactgacc
     3541 cttgggccag cgcgccgtac aagtatgcgg ccgtcagtca cgaacaacgc attcaacatc
     3601 tgtcagacga tctcgagcgc gcgggactga agccgtttca cgtgccgttg gggattcgtc
     3661 tcgacgagaa gaacgcgcgc aagagtctgt gcattcgttg caacacctgt gatggtcatc
     3721 cgtgtttgat cggcgcgaag tcagatgcgc aaacgatctg tgtcgacccg gctctacagc
     3781 acgacaacgt ttccctcgtc acgaacgcga aggtcatgcg cctggagacc aacggcaacg
     3841 cgcgtgaagt cagcaaagtc atcgtcgaac gcaacggcgc gcgtgaagaa tattcagccg
     3901 acatcatcgt ggtttcgtgc ggcgcggtga actccgctgc gttgctgttg cgctcggcga
     3961 atgacagcca cccaaacggt ctcgcaaacg gatcggacgt cgtcggccgt cattacatgg
     4021 gccacatcaa ttcagtgttg atggcgcttt ccaagtgtcc caatccaact gtctttcaga
     4081 agacgctcgc aatcaacgat ttctatttcg gttcgaagga ttgggattat ccgatgggcc
     4141 acatctcgtt cgtcggcaag ct
//
LOCUS       DASWTX010001152         2505 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_389670, whole genome shotgun sequence.
ACCESSION   DASWTX010001152 DASWTX010000000
VERSION     DASWTX010001152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2505
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389670"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..356
                     /locus_tag="VGD38_17590"
     CDS             <1..356
                     /locus_tag="VGD38_17590"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0729902.1"
                     /translation="NDPRASFTLGDLYLTRSDAQRALPLLETARAAYPNEFDTRFALG
                     RALVLTGKLERGIDELKAAVTLDDTIADGHFQLGRALMKAGLTDEGKRELQKAQALHD
                     QKRKNEAERYRKKLP"
     gene            complement(796..>2505)
                     /locus_tag="VGD38_17595"
     CDS             complement(796..>2505)
                     /locus_tag="VGD38_17595"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0729903.1"
                     /translation="WVRGNHTLKMGGEISWEKKDENANNITQGLFSFAGTRSRGTSGG
                     INLTQTGIAFADFMLGRADSYSEDQFDVTVNLRFGRREFFAQDTWRIRPNFTLDYGVR
                     YQYFVPVTDANNVLTSFDPALYNRANAPTCRTAACAALIRGTGNELNGIAIAGSTSRF
                     GEAISPSDKNNFSPRLGISWDPFKSGKTVVRAGYGLYYDQVLVGIFEQNAFVNPPFNN
                     RATFSGAGVGFSNPSGGALGDLPVRDLIASAADFQTPMIQQWSLGIQREIRRNLVAEL
                     SYVGTKGDHLIRPLDINYPSPADVNRVGLANANTVRPFLGYRRIQWRETSARSRYHGM
                     LSSLSYRFTSGVSLTASYTWSKTMTDATNDRDAVDFPQDPLNLRAEYAEARTSRPHIF
                     SASYVYELPFFSKDPNAWKRGFLGGWEIAGITDLASGQPVARVVSGASNVAAIIGQYP
                     NVISDPNAGLAGTIDPVTGLPFIFDPKAFAAPANGTYGNAPRAFARLFGRNQTNLTLT
                     KNIYFQNEDRFKLQLRAEAYNVFNHTQFTGVGTTLTTTSTFGLPTGARLPREFQFGAK
                     LVF"
BASE COUNT          577 a          732 c          700 g          496 t
ORIGIN      
        1 caaacgatcc gcgtgcttcg ttcacactcg gcgatctcta cctcacgcgc agtgatgcgc
       61 aacgcgcgct gccgttgctg gagactgctc gcgccgccta cccaaatgaa ttcgacacac
      121 ggttcgctct cggccgcgcg ctcgtattga ccggcaaact cgaacgcggc attgacgaac
      181 tcaaagccgc cgtaacgctc gacgacacca tcgccgacgg acactttcaa ctcggacgtg
      241 cgttgatgaa agcgggtctc actgacgaag gaaagcgcga actacaaaaa gcgcaggccc
      301 tacacgatca gaagcgcaag aacgaagccg aacggtatcg caaaaaactt ccctaacaac
      361 gagtcgaacg cctaaggcgt ttactacaat gagttcgaac gccaaaggcg tttactagtt
      421 acagcccagg gttgcttcaa ccctgggacc aaaacaagaa caaacgattc aacgccgaag
      481 gtgttggcaa gaccgatgcg atttgccaac gctttcagcg ttgaatacta atcttcgttg
      541 ggttccgagg gttgctgcaa ccctgggacc aagcacaaga aacgactcaa cgccgaaggc
      601 gttggcaaga cagacgcgat ttgccaacgc tttcagcgtt gaaactaatc ttcgttgggt
      661 tcccagggtt gtcgcgagct ccaaccctgg gccgaaatta gcgaacgcct tcggcgtttc
      721 gcgaacgaac tagaacacca acttcgtgcc ggacgatcta gaacaccagt cttcgcgaac
      781 gccagtattc acgaactaga acaccagctt cgcgccgaac tggaattcac gcggcaggcg
      841 ggcgcctgtc ggcaaaccga aggtcgacgt cgtcgttagg gtcgttccca ctcccgtgaa
      901 ctgcgtgtga ttgaacacat tgtacgcttc cgcgcggagc tggagcttga agcgatcctc
      961 gttttggaaa tagatattct tcgtcaacgt caggttggtc tggttgcggc caaacagacg
     1021 tgcgaaggca cgaggagcgt tgccgtaggt gccgttcgcc ggcgccgcaa acgccttcgg
     1081 atcgaagatg aacggcaagc ctgtaaccgg atcgatcgtt ccggcaagac ctgcattcgg
     1141 atccgaaatc acgttcggat actgaccgat gatcgccgcg acgttgctcg cgcccgagac
     1201 gactctcgcc accggctgac ccgatgcaag atccgtgata ccggcaattt cccaaccgcc
     1261 gaggaagcca cgcttccacg cgttcgggtc cttggagaag aacggcagtt cataaacgta
     1321 actcgcgctg aagatgtgcg gccgcgaagt gcgtgcttcc gcgtattccg cgcgcaagtt
     1381 gagtggatcc tgcgggaagt cgaccgcgtc gcgatcgtta gtcgcgtcgg tcatggtctt
     1441 actccaggtg tagctggcag taagcgacac gccgctggta aagcgatagc tgagcgacga
     1501 aagcattccg tgataacgcg atctcgcgct cgtctcgcgc cactgaatgc ggcggtagcc
     1561 gagaaacgga cgcaccgtgt ttgcgtttgc cagtcccacg cgattcacat ccgccggcga
     1621 cggatagttg atgtcgagcg gacgaatcag gtgatcgccc ttggtgccga cgtaagaaag
     1681 ctcggcaacg aggttgcgcc tgatctcgcg ctgaatgccc agcgaccact gttgaatcat
     1741 cggcgtctgg aagtccgccg cactcgcgat cagatcgcgc accggcaaat cgccgagagc
     1801 gccgccactc ggattcgaga aaccaacgcc agcaccacta aacgtagcgc ggttgttgaa
     1861 cggcggattg acgaacgcgt tctgctcgaa gatacccaca agcacctgat cgtagtagag
     1921 accataacca gcgcgcacga ctgtcttacc gctcttgaat ggatcccacg agataccgag
     1981 tcgcggactg aagttgttct tgtctgaggg cgaaatcgct tcgccgaagc gcgaagtgct
     2041 gccggcgatg gcgataccgt tgagctcatt gcccgttcca cgaatcaacg cggcgcaggc
     2101 ggctgttctg caagtcggag catttgcccg gttgtacagc gccgggtcaa atgaagtcag
     2161 tacgttgttc gcgtcggtga cgggaacgaa gtactggtat ctcacaccgt aatcgagcgt
     2221 gaagttcggc cgaattctcc aggtatcctg cgcgaagaat tcacgccgtc caaaacgaag
     2281 attgaccgtc acgtcaaatt gatcttccga atagctgtca gcgcggccca gcatgaaatc
     2341 ggcaaacgcg atgccggtct gcgtcaagtt gatcccgcct gaagttccac ggctgcgtgt
     2401 tccggcgaat gagaacaagc cctgggtaat gttgtttgcg ttctcgtctt tcttctccca
     2461 ggagatctcg ccgcccattt tcaacgtgtg atttccgcgg accca
//
LOCUS       DASWTX010001153         2644 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_389686, whole genome shotgun sequence.
ACCESSION   DASWTX010001153 DASWTX010000000
VERSION     DASWTX010001153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2644
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389686"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..331)
                     /locus_tag="VGD38_17600"
     CDS             complement(<1..331)
                     /locus_tag="VGD38_17600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729904.1"
                     /translation="MANTLTRTLVFGLIVICAHVAHAQDRISIIPQPRQVTANGETFR
                     LERAHIVLADPRSAEDRLAATDFGQEFGPRIRGGRDRNAIVIGWIGLPVIQRALKAAK
                     VDVPASLN"
     gene            402..1436
                     /locus_tag="VGD38_17605"
     CDS             402..1436
                     /locus_tag="VGD38_17605"
                     /inference="COORDINATES: protein motif:HMM:NF013539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEY0729905.1"
                     /translation="MSLMLAEIAEQPAALERTIALERGKIAKLGSLLKTRDIKLIVLV
                     ARGSSDNAALFGRYLLEITTGIPVSLSAPSVHTIYDARLKLDHALVVGVSQSGEGEDI
                     NRVLEHAKQCGAYTVGITNEPNSSMTRLVDQTLLTQGGTERSVAATKTFTGQMLLFYM
                     LAAELAERTAPFSYEAIPQFVAGALEQKAAIQELVQRYVFMENCVVVGRGLAYANAYE
                     MALKLMETCYVVAERFSSADFLHGPLAMVERHFPVILFAPPGVMLPGVKSLIERLREL
                     HADTLAITSDLDAAKLCTRSIVMSPEIDEFLAPIPYIVPGQLFAALLAEAKGLNPDAP
                     RSLSKVTRTL"
     gene            1439..1696
                     /locus_tag="VGD38_17610"
     CDS             1439..1696
                     /locus_tag="VGD38_17610"
                     /inference="COORDINATES: protein motif:HMM:NF012610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEY0729906.1"
                     /translation="MKIELKDRTHSPIYAQVRAQIENQIKDKTVASGESLPSPAALGQ
                     QLSVDKGEIQRAYYELEQLGLIVKHTGKDFLGKPKIDYRVK"
     gene            complement(1701..>2644)
                     /locus_tag="VGD38_17615"
     CDS             complement(1701..>2644)
                     /locus_tag="VGD38_17615"
                     /inference="COORDINATES: protein motif:HMM:NF018449.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SBBP repeat-containing protein"
                     /protein_id="HEY0729907.1"
                     /translation="GAFQTLPGGTNDVFVAKLDATGGVLDYSTLLGGSGIDIGNGIAV
                     NASGNAYVTGFSDSLNFPVTPGAFQTVKAVAADAFVTELSASGNALVYSTYLGGDGID
                     AANGIALDAAGNASIAGLTLSTDFPTTADAIQSDLRGDGDAFVTRLNATGTGLVFSSY
                     LGGGSGDSARDIWVDSAGSIYLAGVTGSADFPITPGAFQTELNGFSDAFVAKLVFADF
                     DVCFQDDGNGDSFQFNSTTGEYRFTGGLTLTGTGTISRRGCLLVLEDNQSGQRVLVHV
                     NECNNKGHAVIQIDSGKKKTTFVITDKDTSNSNCASN"
BASE COUNT          575 a          793 c          719 g          557 t
ORIGIN      
        1 cgttcaggct cgccggcacg tcaaccttcg cagccttcaa cgctctctga ataacaggta
       61 aaccaatcca tccaatcacg atcgcgttgc gatctcgccc gcctctaatc ctcggtccaa
      121 attcctggcc gaagtcggtt gccgcaaggc gatcttctgc tgatcgcgga tcggccagca
      181 cgatatgcgc gcgctcgagc cgaaacgttt caccgttcgc cgtcacttgc cgcggctgcg
      241 gaatgatcga gattcgatcc tgcgcgtgtg cgacgtgcgc gcagatcact atcagtccaa
      301 aaacgagagt tcgtgttaga gtatttgcca agctcggttg tcctcgtgat tgctgtttcg
      361 caggacttta ccacaggaaa gataaacgac acgctaaccg tatgtcttta atgctcgcag
      421 agatcgcgga gcaacccgcc gcactcgaac gcaccatcgc gctggagcgc ggcaagatcg
      481 ccaaactcgg ttccctgctc aagactcgcg atatcaaact gatcgttctc gtcgctcgcg
      541 gcagctctga caacgccgcg ttgttcggcc gttacctgct cgagatcact accggcattc
      601 cggtttcact ttccgctccg tccgtacaca cgatctacga cgcgcgactt aagttggacc
      661 acgcgctcgt cgtcggcgtg tcgcaatcgg gggaaggcga agacatcaat cgcgttttgg
      721 agcacgcgaa gcagtgtggc gcttacacgg tcggcatcac taacgagcca aactcgtcga
      781 tgacgcggct cgtcgatcag acactgttga cgcaaggtgg aacggagcgc tcggtcgcgg
      841 caacgaagac gttcaccggg cagatgctcc tcttttatat gctcgcggcg gagttggctg
      901 aacgcacggc gccgttttcc tacgaagcga ttccgcagtt tgtcgcgggc gcgcttgagc
      961 aaaaagccgc gattcaagag ctggtgcagc gttatgtgtt catggaaaac tgcgtcgtcg
     1021 tcggacgcgg tttggcgtac gcgaatgctt acgagatggc gttgaagttg atggaaacct
     1081 gttacgtcgt cgcggagcgt ttttcgtcag ccgacttcct gcatgggcca ctggcgatgg
     1141 tcgaacgcca ctttcctgtt attctctttg cgccgccggg agtcatgctg cccggagtga
     1201 agagtttgat agaacggctg cgggagttgc acgcagacac actcgccatc acgagcgatc
     1261 tcgacgcggc gaagttatgc acgcgctcga tcgtgatgtc gcccgagatc gacgagtttc
     1321 tcgcgccgat accctacatc gtcccgggcc agctctttgc ggccttgctg gcggaagcga
     1381 aaggactcaa tcccgacgcg ccgcgatcgt tgtcgaaagt aacccgaacg ctttgacgat
     1441 gaagatcgaa cttaaagatc gaacgcacag tcccatttac gcgcaagtac gcgcacagat
     1501 cgaaaaccag atcaaagaca aaaccgtcgc ctcgggcgaa tcactcccct cacccgccgc
     1561 cctgggccaa caactctccg tcgacaaagg cgagatccag cgcgcgtatt acgagctgga
     1621 acaactcggc ctgatcgtaa aacacaccgg caaagacttt ctcggcaaac caaagatcga
     1681 ctaccgcgtg aagtaaccga tcaattactt gcgcagttac tgttcgaggt gtctttgtcg
     1741 gttattacaa aagtcgtctt cttttttccg gaatcgatct gaatcacggc gtggcccttg
     1801 ttgttacact cgttgacatg gaccagcacg cgctgcccgg attgattgtc ttcgagcacg
     1861 agcaaacatc cacgacggct aatcgtgcct gtgccggtca acgtcagccc gcctgtaaat
     1921 ctgtactcgc ccgtcgtcga gttgaactgg aatgaatctc cgttgccgtc atcctggaaa
     1981 caaacgtcga agtctgcaaa cacgagcttg gccacaaacg cgtcggagaa accgttgagc
     2041 tcagtctgaa acgcgcccgg agtaatcggg aaatccgccg agcctgtaac acccgcgagg
     2101 taaatacttc ccgcggagtc gacccatata tcacgtgcgc tatcaccgct tccgcctccg
     2161 aggtagctcg agaagacgag ccctgtgccg gttgcgttca atctcgtgac gaaagcatcg
     2221 ccgtcgccgc gtaagtcgct ctgaatcgcg tctgccgttg tcgggaaatc ggttgaaagc
     2281 gtcagccccg caatggatgc atttcctgct gcgtcgagtg cgataccgtt tgcggcgtca
     2341 atcccgtcgc cgcccagata ggttgaataa acgagggcgt tgcctgacgc gctcagttcc
     2401 gtgacgaacg catccgcggc cacggccttc acggtctgaa aagcgcccgg cgtaacggga
     2461 aagttcagcg agtcactgaa gccggtcaca tacgcattac ctgacgcgtt aaccgcgatg
     2521 ccattgccga tgtcgatgcc acttccgcct aataaggtcg agtagtcgag taccccaccc
     2581 gtggcgtcga gcttcgcaac aaacacatcg ttcgtgccac cgggaagcgt ttgaaacgcg
     2641 ccgg
//
LOCUS       DASWTX010001154         3569 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_38329, whole genome shotgun sequence.
ACCESSION   DASWTX010001154 DASWTX010000000
VERSION     DASWTX010001154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3569
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38329"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..371
                     /gene="argB"
                     /locus_tag="VGD38_17620"
     CDS             <1..371
                     /gene="argB"
                     /locus_tag="VGD38_17620"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: protein motif:HMM:NF012899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEY0729908.1"
                     /translation="LPVISSLGADDEGMVFNINADTIAAEIAVQLQAEKLILLSDVDG
                     IYLKPDDTQTKLSRLTAAEADELITSGAATGGMIPKLQSITTLLRRGVHSAHIISGTN
                     RNALLSEVFTDKGTGTMIVA"
     gene            complement(494..1072)
                     /locus_tag="VGD38_17625"
     CDS             complement(494..1072)
                     /locus_tag="VGD38_17625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729909.1"
                     /translation="MSYIQFAEEPDQEERIAKLRQEVEKLGGGTMSLESMPADMEEEF
                     LRHVLEYENAEPISLLRLLENSGLEVPPPDQFDDETLAIKLKELIDRMASLGAYLLHT
                     DHLSDRALYEYLYHDGLREEAVLFPENPSYAYMNDLTGSGSEEDNQVYLKYSADEQYR
                     QQWANDWPDDVLPEREAPPFDRDRFLPQSPIG"
     gene            complement(1166..1897)
                     /locus_tag="VGD38_17630"
     CDS             complement(1166..1897)
                     /locus_tag="VGD38_17630"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEY0729910.1"
                     /translation="MASLTAAGACALLIGCRANPSGPSGSSGATNDEGKEPAPGEVVP
                     EEVSAVEDLMREHGILRRALMVYQESLVRLRQDAASVPAEALEKTAKLFRVFGEDYHE
                     QRLEEAYIIPMIKKVQGPVAIYADVLVAQHARGREITDYLLSVTTGDRLATAQVDSVM
                     KALESFVRMYDHHAAVEDTVIFPAWKKLTGEQEYNELGEKFEEIEHEIFGEDGFESAR
                     RRMEEIESSLGLTNLEMFTAPPLPK"
     gene            2017..2472
                     /locus_tag="VGD38_17635"
     CDS             2017..2472
                     /locus_tag="VGD38_17635"
                     /inference="COORDINATES: protein motif:HMM:NF026066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEY0729911.1"
                     /translation="MNNAEIARRFHRLSALMEIRGDDPFRLRSYRNAAEAIEVWPTPL
                     KEIAEKDGLAGLQEIPGVGKAIAGKVIDFLERGTFDAWERLIAETPETVLDLTEIPGI
                     GPKTAALLHTRFKVSSLPDLKSFVSGGGLDQVDGIGPKTAERIKEALDL"
     gene            3256..>3569
                     /locus_tag="VGD38_17640"
     CDS             3256..>3569
                     /locus_tag="VGD38_17640"
                     /inference="COORDINATES: protein motif:HMM:TIGR01409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HEY0729912.1"
                     /translation="MTKKIKRRDFMRTGAVAGLTLAAGSKEATGFPTILTQSAVKPLV
                     IASANGNRFKKGGNVTAVQKAFTMMTSGSDVLDAVIAGVNIVELDPLDDSVGYGGLPN
                     ADG"
BASE COUNT          785 a         1081 c          939 g          764 t
ORIGIN      
        1 atttgcccgt gatctcgtca ctcggcgccg acgacgaagg catggttttc aacatcaacg
       61 ccgacacgat cgccgccgaa atcgcggtcc agttgcaagc cgagaagctg attctgctga
      121 gcgacgtcga cggcatctat ctaaagcccg acgacacgca gaccaagctc tcgcgcctga
      181 ccgccgccga agccgacgag ctcatcacga gcggcgccgc cacaggcgga atgatcccca
      241 aactacagag cataaccaca ctcctccgcc gtggagttca ctccgcccac atcatcagcg
      301 gcaccaaccg caacgccctc ctctccgaag tcttcaccga caaaggcacc ggcaccatga
      361 tcgtcgcctg atcaccagcg agtcgtcacc aacccacggc gaccaccagc gagtcgtcac
      421 gcaacacacc agcggcacca tcgcctcgtt tcagcgccgt gcgattgcga caacaatccc
      481 cgccccaccg gtgtcaccca atcggcgact gcggcaggaa gcgatcgcga tcgaacggcg
      541 gcgcctcgcg ttccggtaac acgtcatcag gccagtcgtt cgcccactgc tgccggtact
      601 gctcatccgc ggagtacttc aaataaacct ggttgtcttc ctcgctgcca ctacccgtga
      661 ggtcgttcat gtacgcataa ctcggattct ccggaaacaa caccgcctcc tcacgcaaac
      721 cgtcgtgata gagatactca taaagcgcgc gatccgagag gtggtccgtg tgcaacaggt
      781 acgcgcccaa cgacgccatg cgatcgatca gctctttcag tttgatcgca agcgtctcat
      841 cgtcgaactg gtccggcggc ggcacttcca accccgagtt ttccaacaac cgtaacagac
      901 tgatcggctc agcgttctca tactcgagca cgtggcgcaa aaactcttct tccatgtcag
      961 ccggcatgga ctccagcgac atcgtgccgc cacccagttt ttccacttcc tggcggagtt
     1021 tggcgatgcg ttcttcctga tcgggttctt cggcgaattg tatgtacgac attttggctc
     1081 cttaagaaat cgagaggttt aaggtttgag gtgcctgcgg agttgctgtg aggaacctcc
     1141 gtccgatttt tgttttgtga ggatattact ttggcagggg tggcgctgta aacatctcca
     1201 gatttgttag accaagactg ctctcgatct cctccattcg ccgccgcgcg ctttcaaagc
     1261 catcctcgcc gaagatctcg tgttcgatct cttcaaactt ctcgccgagc tcgttgtatt
     1321 cctgttcacc cgtcagcttc ttccacgccg gaaagataac ggtgtcttca acagcggcgt
     1381 gatggtcgta catgcgcaca aacgattcga gcgctttcat cacactgtcg acctgggccg
     1441 tggcgaggcg atcgcctgtg gtaacggaca acaggtaatc cgtgatctcg cggccgcgcg
     1501 cgtgttgggc caccagcacg tcggcgtaaa tcgcgaccgg cccctgcacc ttcttgatca
     1561 tcgggatgat gtaggcctct tccaaacgct gctcgtgata gtcttcgccg aacacgcgaa
     1621 acaacttcgc cgtcttttcg agtgcttcgg cgggcactga cgccgcgtcc tgccgcagtc
     1681 gcaccagcga ctcctgatac accatcagcg cgcggcgcag aatgccgtgc tcgcgcatca
     1741 agtcttccac tgccgaaacc tcctccggca cgacttcacc cggcgcgggt tctttacctt
     1801 cgtcattcgt cgcgccactc gagccactcg ggccacttgg attcgcgcgg caaccaatca
     1861 acaacgcgca cgcgccggcc gcagtaagac tcgccaaaag ctgtcttctc gtttcgttca
     1921 actgtgctgc tccgttctga tgaagatcgc gggctggata ttactgcgct cgcgagttta
     1981 gactagcaca tactcaaaag accggatcgt gaactgatga ataacgcaga gatcgctcgc
     2041 cgattccacc gcctgtccgc actgatggaa atccgcggcg acgatccgtt tcgcctgcgc
     2101 tcgtatcgca acgccgccga agcgatcgaa gtgtggccca cgcctttgaa agagatcgcc
     2161 gaaaaggacg gactcgcggg cttgcaggag attcccggcg tcggcaaagc gatcgccggc
     2221 aaagtgatcg attttctcga acgtggaacc ttcgacgcct gggaacggct catcgccgag
     2281 acacccgaaa ccgttctcga tctcaccgaa atccccggca ttggaccaaa aaccgccgcc
     2341 cttttgcaca cgcgcttcaa agtctcttcc ctacccgacc tgaagtcctt cgtctccggc
     2401 ggcgggctcg accaggtcga cggcatcggt ccaaagaccg ccgaaagaat taaagaagcg
     2461 ctcgatctct gaacgttctg aattcgagcg acgttctggg cgtaacgttt tgagttcaag
     2521 ctttagcttg caacgtaccg acaaaggaga cctcacatcc atgtatgact ggcgaaaaat
     2581 gaccgcacac gagagggagc aaaccctttc tatacgaaac tcacgaagat taccgtggca
     2641 ctcgcctccc catttcaact ttgatggtac tcactgttat ctaatctcag ccgcctgtta
     2701 tgagcacgcg gacatcatcg gccgcggacc tgaacggatg actgaatgcg aagacgaaac
     2761 actgggagtg tatcgaaact tttgtctatc gctccatgct tggtgtattc tccccaatca
     2821 ctatcacgcc ttggtgaaga ccgatcgaat cgaggcattg cgccacgcgt taggtaactt
     2881 tcatggtcga tcctcatttg tttggaatgc tgaggacaac tgtcgaggcc gcaaggtttg
     2941 gcacaactgt ttcgagcgac gaattaagtc ggagcggcac ttctgggcca cactgaacta
     3001 cgttcaccat aatcctgtcc atcacgggta cgttgagcag tggcaggatt ggccgtggtc
     3061 gagcgcaagt cagtttttgc aggaagtagg tcgggagcgg gcgttaggag tctggttgag
     3121 ttacccaatt ctcgactatg gtaagaaatg ggatctgtag tagatgttga atttcagaca
     3181 agctaaagct tgaactcaaa acgcaagcat cgggacttga tttccttagg aactccaaat
     3241 tcgtaggaag agaccatgac gaaaaagata aaacgccgtg acttcatgcg caccggtgcg
     3301 gttgccggtt tgacgctcgc cgctggcagt aaagaagcga ctgggtttcc gacgatcctg
     3361 acgcagagcg ccgtcaagcc gctggtgatt gcgtccgcga atgggaaccg tttcaagaag
     3421 ggcggcaacg tgaccgcggt gcagaaggcg ttcacgatga tgacgagcgg ttcggatgtg
     3481 ctcgacgctg tgatcgcggg cgtgaatatc gtcgagctcg atccgctcga cgatagtgtt
     3541 ggctacggcg gtttgccgaa tgctgatgg
//
LOCUS       DASWTX010001155         4950 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_234140, whole genome shotgun sequence.
ACCESSION   DASWTX010001155 DASWTX010000000
VERSION     DASWTX010001155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4950)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4950)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4950
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234140"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..752)
                     /locus_tag="VGD38_17645"
     CDS             complement(<1..752)
                     /locus_tag="VGD38_17645"
                     /EC_number="7.6.2.7"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0729913.1"
                     /translation="MADNEATTLPQSGEPGTIAVDVGEQKRGTYKPEQTAVTPKLRVS
                     NLSVTYIDRKGNRTEAVRDVSFDILDKPNTGEIVVFLGPSGCGKSTILKAVAGLLPPT
                     KGEVLVDGELVTDVGRDRGMVFQAYTSFSWLTVRENVEYGLRLQGTPKSERRKISDAI
                     LQEVGLADFANRYPKDLSGGMKQRVAIARTLVNKPRVVLMDEPFGALDPQTRWGMQSL
                     LLEISRLENNTILFVTHDVSEAVYLADTIYVLS"
     gene            complement(755..1552)
                     /locus_tag="VGD38_17650"
     CDS             complement(755..1552)
                     /locus_tag="VGD38_17650"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0729914.1"
                     /translation="MATRSSSFAIRAPLPKRTAFLLGFVAPALVLGAWCALTYGGLVQ
                     PDFLPTPTEVVRGTLQLFIQYDLGLAIFVSTRRIAIAFLLASAIALPLGVLMGAFDPI
                     NRFFEPIMAPLRYMPISAFIPLLILWFGIYEKQKIAFLFLGVFVYLLPVVVTAIRLVP
                     EELVQTALTLGASKFQVIRTVLVPAALPEIFDSFRVMNAIAWTYVILAEAVNPEHGLG
                     YMVELARTHQKASWSFAGLLVIGGIGLLTDFLIRLLSSLLFRWREAT"
     gene            complement(1569..3185)
                     /locus_tag="VGD38_17655"
     CDS             complement(1569..3185)
                     /locus_tag="VGD38_17655"
                     /inference="COORDINATES: protein motif:HMM:NF020650.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding/OmpA
                     family protein"
                     /protein_id="HEY0729915.1"
                     /translation="MRLTPLAKAFIAIVVLAVIGFATWHYKGDAIKQWAGGERETGED
                     SKGDFDKLTNAPGDPDRNAGSTGVSSISLGSGRLNRPLVVGINTWAGHAPGVVFNNGM
                     EPNPGSSYKTKYGLDVKFVLLEDPSSKLAAFRGGQVDIMWNTVDNWAREASILAENNQ
                     QAKSIIMQDWSRGGDGIVALSSIKSVEDLKGHKIACTQFTPSHFLLLYLLSQSGLSPE
                     DRAGVEKNIVFFTDAPAAAAAFKAKQVDAAVTWEPDLSAAVANRGAEAHILVSTQAAT
                     NIIADTLCARQDVIDQAPETVRDFVRGWLDGIEMIKSNPNPSYEVVARALKLDTDTVS
                     GMLSGLKLTPYADNAQFYGLTGARAHYETLFDTAYVIWRKKGLVNKTVDAKGWADTRF
                     LQAVASYYPGQKVEEAPVVAKAPSEKDVPILHQQIQIQFTPGSDEIMPGSYLLLDKLG
                     ETMTSFGSTVLRIEGNTDSTGSASGNVSLSERRAQSVKNYIVKNFPNIPPTRFQTIGR
                     GSTNPIAENTTEAGRQQNRRTDIKVILATS"
     gene            complement(3274..3969)
                     /locus_tag="VGD38_17660"
     CDS             complement(3274..3969)
                     /locus_tag="VGD38_17660"
                     /inference="COORDINATES: protein motif:HMM:NF015945.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspA/IM30 family protein"
                     /protein_id="HEY0729916.1"
                     /translation="MWKRLANLWKGFLSLWISDIEKEHPEIAYENAINSMVAKYSKLK
                     TATAGIIRRREELDERFKRASAELAQTEAELDTAVSTNQDDLAVILIQKKNQLAADVA
                     ELKTEMEQARSDADSAKTSLLGVQSEIRKLQSERDSMLAKMQSAQARIKVQEQLDGLS
                     VDAEVKALDNVRQHIKTTIAEANLGKELSESSLDSRLAALRNQTGEVQAKQQLAELKA
                     KKAAQQATQNKTM"
     gene            complement(3988..4677)
                     /locus_tag="VGD38_17665"
     CDS             complement(3988..4677)
                     /locus_tag="VGD38_17665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729917.1"
                     /translation="MSDKKSWGSTVAGWFIERDEPETPTEIESPEHEAGVTADYAPSI
                     PDNSYTTPSPTQGVFQTAPPPPAGGQVDFAAVFVAAGVDEEEQQRVARTTELLRSLPA
                     GTDAAVKKQIVEASLKAFGVPIEKIIEATAEEIQALDGYIRNCAADNEKLIQESDARI
                     KEYEREIANIRTVMQQSVEEQQNLIKVCNDKKLEVQQVLEFFGRDKVASVVKASPKLH
                     DPSDPAANPAS"
BASE COUNT          962 a         1395 c         1460 g         1133 t
ORIGIN      
        1 gacagcacgt agatcgtgtc ggccaaataa acggcttcgg acacgtcgtg cgtgacgaac
       61 aggatcgtgt tgttttcgag gcgcgagatc tcgagcagca ggctctgcat gccccagcgc
      121 gtctgcggat cgagcgcgcc aaacggctcg tccatcaaca caacgcgcgg cttgttgacg
      181 agcgtgcgcg cgatcgcgac gcgttgtttc atgccgcccg aaagatcttt cggataacga
      241 ttagcgaagt ctgccagtcc gacttcctgc aggatcgcat ctgaaatctt gcgccgttcg
      301 gatttgggcg ttccctgtag tctcaaaccg tactcgacgt tctcgcgcac cgtcagccaa
      361 ctgaaagacg tgtaggcctg aaagaccatg ccgcgatcgc ggccgacgtc cgtcaccagt
      421 tcgccatcga ccagcacttc gcctttcgtc ggcggcaaca ggccagcgac cgctttcaga
      481 atcgtcgact tgccgcaacc cgatggtcca agaaagacga cgatctcgcc ggtgttgggt
      541 ttgtcgagaa tgtcgaacga cacgtcgcgc actgcttccg tgcgattacc tttgcgatcg
      601 atgtaagtga cgctgagatt gctgacgcgc aacttgggcg tgacggccgt ctgttccggc
      661 ttgtacgtcc cgcgtttttg ctcgccgacg tcgacggcga tcgttccggg ttcaccggat
      721 tgtggcaggg ttgtagcttc gttgtcagcc ataactatgt cgcttcgcgc cagcggaaga
      781 gcaagctcga aagcagtcga atgagaaagt cagtcaacag accaataccg ccgatcacca
      841 gcagtcctgc aaaggaccac gacgctttct ggtgcgtgcg cgcgagctcg accatgtaac
      901 cgagtccgtg ttcgggattg acggcctcgg cgagaatcac gtaggtccac gcgatcgcgt
      961 tcatcacgcg gaagctgtcg aagatctccg gcaaagcagc gggaacgagc accgtgcgga
     1021 tcacctggaa cttcgacgcg ccgagtgtca acgcagtttg gaccagctcc tcggggacga
     1081 gtcgaatcgc cgtgacgacc acgggcagca agtagacaaa gacgccgaga aacagaaacg
     1141 cgatcttctg cttctcgtaa atcccgaacc acagaatgag taggggaatg aacgccgaga
     1201 tcggcatgta gcgcaacggc gccatgatcg gttcgaagaa acggttgatc ggatcaaacg
     1261 cgcccatcag cacgccgagt ggcagtgcga ttgccgaagc gagtagaaac gcgatcgcga
     1321 tgcggcgcgt cgagacgaag atggccaggc ccagatcgta ttgaatgaac aactgcaatg
     1381 tgccgcgcac gacttccgtc ggcgtcggca ggaagtcagg ttggaccagg ccgccgtagg
     1441 tcaacgcgca ccacgcgccc aggacgagcg cgggtgcgac gaagccgagc agaaacgccg
     1501 tgcgcttcgg cagcggcgca cgaatagcaa aggaggagct gcgtgtggcc atctgtgtga
     1561 tttgtgaatt acgacgtcgc caatatcacc ttaatgtcgg tacgcctgtt ttgttgccgt
     1621 cccgcttcag tcgtgttttc cgcgatcggg ttggttgaac cgcggccgat tgtctggaag
     1681 cgtgtcggcg gaatgttcgg gaagttcttg acgatgtagt ttttcactga ttgcgcgcgg
     1741 cgctcggaga gcgacacgtt tcctgaggcc gagccggtgc tgtcagtgtt gccttcgata
     1801 cgcagcacgg tgctgccgaa ggacgtcatc gtctcgccga gtttgtcgag caagagatac
     1861 gagccgggca tgatctcgtc agagccgggc gtgaactgaa tctggatctg ctggtgcagg
     1921 atcggcacgt ctttttcaga cggcgctttc gcgacgacgg gcgcttcttc gaccttctgg
     1981 cccggatagt aagaagccac tgcttgcagg aagcgcgtgt cggcccagcc tttggcgtcc
     2041 acggtcttgt ttacgagacc tttcttgcgc cagatcacgt aggcggtgtc gaagagtgtt
     2101 tcgtagtgag cgcgtgcgcc ggttagaccg tagaactgcg cgttgtcggc gtaaggcgtg
     2161 agcttcaagc ctgacagcat gccggagact gtgtcggtgt cgagtttcaa tgcgcgtgcg
     2221 acgacttcgt atgacgggtt cggattgctc ttgatcatct cgatgccgtc gagccagccg
     2281 cgtacgaagt cacgcacggt ttccggcgcc tgatcgatca cgtcctgacg cgcgcagagc
     2341 gtatcggcga tgatgttggt tgcggcttga gtggaaacga gaatgtgcgc ttccgcgcca
     2401 cgattagcga cagcggctga aagatccggt tcccacgtca cggcggcgtc aacctgtttc
     2461 gctttgaagg ctgcggctgc ggcaggcgcg tcggtgaaga agactatgtt cttttcgacg
     2521 cccgcgcgat cttccggaga cagacctgat tgcgacaaga gataaagcag caggaagtgt
     2581 gacggcgtaa actgcgtgca cgcgatcttg tggcctttta gatcttcgac tgacttgatc
     2641 gacgagagtg cgacgatgcc gtcgccgccg cgcgaccagt cctgcatgat gatcgacttc
     2701 gcctgctggt tgttctcggc gaggatcgag gcttcgcggg cccagttgtc gacggtgttc
     2761 cacatgatgt cgacctggcc gccgcggaac gccgccagtt tcgaggacgg atcttcgagc
     2821 aacacgaatt tcacgtcgag gccgtacttg gttttgtaag acgagccggg gttgggctcc
     2881 atgccgttgt tgaagacgac gccgggcgcg tgtccggccc acgtgttgat gccgacgacg
     2941 agcgggcggt tgagacgtcc ggagccgagc gagatgctgc tgacgccggt tgagccggcg
     3001 ttacgatcgg gatcgccggg ggcgttagtt agtttgtcga agtcgccctt tgagtcttcg
     3061 ccggtttcgc gttcgccgcc ggcccactgt ttaattgcat cacctttgta gtgccaggtg
     3121 gcgaagccga tcacggccag gaccacgatg gcgataaaag cctttgccag gggagtcagt
     3181 ctcattggtc acctcgtcag tttgggcttt gagattggtt tgaaatacgc cgaaggcgct
     3241 ctcgagtagt cacaaattgg acgccacaac ggtttacatc gtcttgttct gtgtggcttg
     3301 ttgggcggct ttcttggctt ttagttctgc caattgttgc ttagcctgta cctcaccggt
     3361 ttgattgcgt agcgctgcga gacgcgagtc gagtgaggac tccgatagct cttttccgag
     3421 attggcttcg gcgatggtcg tcttgatgtg ctgccgcacg ttgtccaacg ccttcacttc
     3481 cgcatcaaca gacaatccat ccaactgctc ctgcaccttg atgcgcgcct gcgccgactg
     3541 catcttcgcc aacatcgaat cacgctcgct ctgcaacttg cgaatctccg actgcactcc
     3601 gagcaacgac gtcttcgccg aatcggcatc actgcgtgcc tgttccatct cggtcttcaa
     3661 ctccgccaca tccgccgcga gttggttctt cttctggatc agaatgacgg cgagatcgtc
     3721 ctggttggtt gaaacagccg tatcgagttc ggcttcagtc tgggccaact cggcactcgc
     3781 gcgtttgaaa cgttcgtcga gctcttcgcg gcggcgaatg atcccggcag tcgcagtctt
     3841 gagtttggaa tattttgcca ccatcgagtt gatggcgttt tcgtaagcaa tctcgggatg
     3901 ctctttttcg atatccgaaa tccagagcga taggaaacct ttccagaggt tagccaaccg
     3961 tttccacata gatttctttc ctttctctta actggccgga ttagccgccg ggtcggaagg
     4021 atcgtggagc ttgggagaag ccttgacgac actcgcaact ttgtcgcgtc cgaaaaactc
     4081 gagcacctgt tgaacttcaa gcttcttatc gttgcacacc ttgatcaggt tttgctgttc
     4141 ctcgacactc tgctgcatca cggtacgaat gtttgctatt tcccgttcat actctttgat
     4201 acgcgcatcg gattcctgga tgagcttttc gttgtcggcg gcgcagttgc ggatgtaacc
     4261 gtcgagcgcc tgaatctctt ccgcggtcgc ctcgatgatc ttctcgatcg gaacgccgaa
     4321 ggctttcagc gacgcctcga cgatctgctt cttgactgcg gcgtctgtcc ccgcgggcaa
     4381 gctgcgcaac aactcagttg tgcgcgcaac acgttgctgt tcctcttcgt caacacctgc
     4441 cgcgacgaac actgcggcga agtcgacctg tccaccagcc ggcggaggcg gtgcggtttg
     4501 aaagacgcct tgagtcggcg acggcgtcgt gtagctattg tcgggaatcg aaggggcgta
     4561 gtcagccgtc acgccggctt cgtgttcggg tgattcgatt tctgtgggcg tctccggctc
     4621 atcgcgttcg ataaaccagc cggcaactgt cgagccccaa cttttcttgt cactcataag
     4681 cgggtctact cctgagcaaa ccgcgaaagc ttaccatagg tcgcgccagc cgtccgccga
     4741 aaatccgggc tttcgagcga gactaaactc aaggcttgta atctgttgca tgtgggatta
     4801 atctaacggg gcatctctcc aaggtttttc tctccccctc ttgtcccaat ccatgttgcg
     4861 agctaagtac aacctaaacc ccggtcaccc atctctaaag ggagcaacga acatgagagt
     4921 attctgtccc gaacacaaac gaggtttctt
//
LOCUS       DASWTX010001156         4301 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_38356, whole genome shotgun sequence.
ACCESSION   DASWTX010001156 DASWTX010000000
VERSION     DASWTX010001156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4301
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38356"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1142
                     /locus_tag="VGD38_17670"
     CDS             <1..1142
                     /locus_tag="VGD38_17670"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0729918.1"
                     /translation="PTPSQVVLGPVLEHIDENKIPALAAATSKAGVWNDPTITLFKLV
                     VSDTTPEELLKWPEMQYIPAKMREGFAKQKQSTLGKPVPLSERQRYLELRNKMLVALR
                     AAGAKLLVGPDSPQFFLVPGFATHRELQSFVEAGLTPYQAIEAATRNPAEYFATTMKT
                     PRDFGTVEVGMRADLLLLNANPLQSVANLSKREGVMVRGRWLPETELRQMLDNVAALN
                     RAPAAAPAATPPAASSAAAQAKADFSGTWTLDKANSEGLPPGMDQVMTVVRTGDKLSL
                     ETKLIGDEGEQVVADSYTLDGKEADFTPKTPGGQSGKGKRTAKWTADGIEVTETSTFD
                     GPEGPVNIQLQRKWVLSADGKTLKIEIVAEGPQGKQQIKRTFIKK"
     gene            1491..2558
                     /locus_tag="VGD38_17675"
     CDS             1491..2558
                     /locus_tag="VGD38_17675"
                     /inference="COORDINATES: protein motif:HMM:NF020855.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0729919.1"
                     /translation="MLDVQPVKPVVNTVGTADTKQAYLLLEQKQFAAAAKAAKDLAAQ
                     HPNDPEAYKIAGFAELNLKQYAEAAKDLEKAVQLQRASKQEDPNTESALGQAYVLSER
                     YQEALPLLVAATNRDANKPDALMVYYRGISEYKTGKIAEAEKSFNQVVKLNPKDSLSL
                     FYLAQIALGKNDLDGAIASLNRATVNDARMTGAWTLLTSSYLRRAATSTDQAKADADY
                     INAVRSGEALIKLRTDAEAITLFGQALIGAKQYARAAAALDRATASQDATGTTFYLLG
                     VAQSRAANFPKAIAALDMAAKKTPEDVNIYRELGYAYEVTKQYPKALAAYQKGAALAP
                     SDPDFKESIERVKPVANQVKQ"
     gene            2567..2830
                     /locus_tag="VGD38_17680"
     CDS             2567..2830
                     /locus_tag="VGD38_17680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729920.1"
                     /translation="MRDKLPDLAATARAFATYSLVPYLGILFCPGAVVVGTVGVVRSY
                     SSPQMSAARKVCYVSTAVGVVVLIAQLLLWWILYQVPAWAPAQ"
     gene            2857..3414
                     /locus_tag="VGD38_17685"
     CDS             2857..3414
                     /locus_tag="VGD38_17685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729921.1"
                     /translation="MRIIFSLLMIGALLTGAFAQRPRSAEPEPAKAPAPAAPAPKTVK
                     AKYEGGVFGYTKTMEGTLTFDDTNERLVFKDKKPPKEIHIPYESITSAFADTQKRQPA
                     AATVASAIPSIYSLPARFIKTKVRYLTLQYSDPDSKVSGITSFKLENKELLESVLATL
                     AHKAGMTLRGDVYVKKREDSSKLDR"
     gene            3534..>4301
                     /locus_tag="VGD38_17690"
     CDS             3534..>4301
                     /locus_tag="VGD38_17690"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vWA domain-containing protein"
                     /protein_id="HEY0729922.1"
                     /translation="MNSLPVKILTAILTFAIGVAAAGLWFTRWFDPVIQPVAIQQSAA
                     RLEMVFVLDTTGSMGGLIEGAKQRIWGIVNEVMQDSHSSVRIGLVAYRDRGDEYVTQV
                     LPLTADLDQVYTTLMNYKAAGGGDEAEDVRTALADSVYKAGWSPVSSDLAQIIFLVGD
                     APPHNDYENTTDTLTTAANAVRSGIIVNTIQCGTMGPTTRAWRAIAQHGNGQYFAIAD
                     NGGVQAISSPYDEQMGQLSSQLGQTFVPYGFGDSADPE"
BASE COUNT         1020 a         1333 c         1187 g          761 t
ORIGIN      
        1 agcctacgcc gtcacaagtc gtgctcggac ccgtgctcga acacatcgac gaaaacaaaa
       61 ttccagcgct cgcggccgcc acgagcaaag ccggcgtatg gaacgatcca accatcacgc
      121 ttttcaaact cgtcgtctca gacaccacgc ccgaagaatt attgaagtgg cccgagatgc
      181 aatacatccc ggccaagatg cgcgaaggat tcgcgaaaca gaaacagtca actctcggca
      241 agcctgtccc gctcagcgag cgccagcgtt atctcgagct ccgcaacaag atgctggtcg
      301 cgttgcgtgc cgccggcgcg aagctgctcg tcggtccgga ctcgccgcag ttctttctcg
      361 tccccggctt cgcgacgcac agagaattgc aaagcttcgt tgaagcagga ctgactccgt
      421 accaggcgat cgaagccgcg acacgcaatc ccgcggagta cttcgctacg acgatgaaaa
      481 cgccgcgcga cttcggcacc gttgaagtcg gtatgcgcgc ggaccttctt ttgctcaacg
      541 cgaacccgct gcaatcggtc gcgaaccttt cgaaacgtga aggcgtgatg gtgcgcggac
      601 gttggttacc ggaaaccgaa ctgcgccaga tgctcgacaa cgtcgccgcg ctcaaccgcg
      661 cgcccgcagc agcaccggca gcaaccccgc ccgcggcttc atcagccgca gcacaagcca
      721 aagcggactt cagcggaacc tggacgctcg acaaggccaa cagcgaaggt ctgccgcccg
      781 gcatggatca agtcatgacc gtcgtccgaa ccggcgacaa gctctcattg gaaaccaaac
      841 tgatcggcga tgaaggcgag caggtggtcg ccgacagcta cacgctcgac ggcaaagaag
      901 cagacttcac tcccaaaaca cccggcggcc aaagcggcaa gggcaaacga accgccaagt
      961 ggacggctga tggcatcgag gtcactgaga cgtcgacttt cgatggccct gaaggcccgg
     1021 tcaacattca actgcaacgc aagtgggtgc tctcggccga cggcaaaacc ctgaagattg
     1081 aaatagttgc cgaaggccca caaggcaagc agcaaatcaa acgcaccttc atcaagaagt
     1141 agtccgtgtt atccgtgaaa tccgtggcct gaacacaacg caactcaccc ttttccgcat
     1201 cggaaggttt gtttcaaaga ggaacccggg aatttcccgg gttctgagct ttcaaaccta
     1261 accttctccc gcatacaatc gtacgcacca tgagtagatt tacgcttatc gcagctatcc
     1321 tccttctgtc agtggcaacg gctgaggcgc aatcgaccag gccgagacgc gcgagacccg
     1381 cgcaaaagag caatacgaca acaacgaccg acaaatccgc gtccgaaccg ttgctgcggc
     1441 cggaaccaac ctcgtcgcct acggcgcggc gcaccagttc aaacgattca ttgctcgacg
     1501 ttcagccggt caaaccggtc gtgaacaccg tcggcacggc cgacacgaag caggcgtatc
     1561 tcctgctcga acagaagcag tttgccgcgg ccgcgaaggc agcaaaggat ctcgccgcac
     1621 aacacccgaa cgatcccgaa gcgtacaaaa tcgccggctt tgccgagttg aacctgaaac
     1681 agtacgccga ggctgcgaag gatctggaaa aggccgttca gttgcagcgc gcctccaaac
     1741 aggaagatcc gaacaccgag agcgcactcg gacaggcgta cgtgctttcc gaaagatacc
     1801 aggaagcgtt accgctgctc gtcgcggcaa caaaccgcga cgcgaataag cccgacgcgc
     1861 tgatggttta ctaccgcggc atctccgaat acaaaaccgg caagattgcc gaagccgaaa
     1921 agagcttcaa ccaggtcgtc aaactgaatc cgaaagattc actgtcgctc ttttacctcg
     1981 cgcagatcgc gctcggaaaa aatgatctcg acggcgctat cgcttcgctg aatcgcgcta
     2041 ctgtcaacga cgcacgcatg accggcgcct ggaccttgct aacgtcgtcg tatctgcgac
     2101 gcgccgcgac gagcaccgat caagcaaaag cagacgccga ttacatcaac gccgttcgtt
     2161 ccggcgaggc tctgatcaaa ctgcgcacag acgccgaagc gatcacgctt ttcggccagg
     2221 cgctaatcgg cgcgaaacag tatgcgcgcg cggcagcggc actcgatcgc gcaaccgctt
     2281 ctcaggacgc gaccggcaca acgttctatt tgttgggcgt cgcccaatca cgcgcggcaa
     2341 acttcccgaa agcaatcgcg gcgctcgaca tggccgccaa gaagaccccg gaagacgtaa
     2401 acatctatcg tgagctcggc tacgcctacg aagtcacgaa gcagtatcca aaggcgttag
     2461 cggcgtatca aaagggcgcg gcgctcgctc ccagcgatcc tgatttcaag gaatcgatcg
     2521 agcgcgtgaa gcctgtcgcc aatcaagtca agcagtgatg tgagtaatgc gcgataaact
     2581 tccggacctg gcagcgaccg cgcgcgcgtt cgcgacctac tcgctggtgc cgtacctcgg
     2641 catcctgttc tgtccgggcg cggtggtggt tggaaccgtt ggcgtggttc gatcctacag
     2701 ttcaccgcaa atgagtgccg cgcgaaaggt ctgttacgtc agcaccgctg tcggcgttgt
     2761 cgtactgatt gctcagttgc tgctctggtg gattctgtat caggtccctg cttgggcgcc
     2821 ggctcaataa ctcaaaccgg ctagaaggag acgacaatgc gaattatttt ttctctgctc
     2881 atgatcggag cgttgctcac cggcgcattt gcgcagcgac cccgcagcgc ggagcccgag
     2941 ccggcgaagg cacccgcacc cgcagcacct gcaccaaaaa ccgtcaaagc gaagtacgaa
     3001 ggcggcgtgt ttggttacac gaagacgatg gaaggcaccc tgaccttcga cgacacgaac
     3061 gaacggttgg tgttcaagga caagaaaccg ccgaaagaga ttcacattcc ttacgagtcg
     3121 atcacttcgg catttgccga cacgcagaaa cggcaaccgg cggcagcgac agtcgcgagc
     3181 gcgattccgt ccatctattc attgccggca cgcttcatca agaccaaagt gcgttacctg
     3241 accttgcagt acagcgatcc cgattcgaag gtcagcggca tcacgagttt caagctcgag
     3301 aacaaggagt tgctggagtc cgtgctcgcc acactcgcac ataaagcggg catgacgctg
     3361 cgcggcgacg tttacgtcaa aaagcgagaa gattcgagca agctcgaccg gtaacccact
     3421 cctgaactca cttaatccac agattacaca gacggttctg tgtaatctgt ggattactta
     3481 ttttctggga acgaattccc cgctcgaacg tctaagggac agaggttctc gccatgaatt
     3541 cgctgccagt caagatcctg accgccatac ttacgtttgc aatcggcgtt gccgccgccg
     3601 gactctggtt cacgcgctgg ttcgacccgg tcatccaacc ggtcgcaatt cagcaatctg
     3661 ccgcccggct cgaaatggta tttgtgctcg acaccaccgg ctcgatgggc gggctaatcg
     3721 aaggcgcgaa acagcgtatc tgggggatcg tgaacgaggt aatgcaggac tcgcactcct
     3781 cagtgcgcat cggcctcgtg gcctatcgcg atcgcggcga tgagtacgtc acacaggttt
     3841 tgccgctaac ggccgatctc gatcaggtct acaccacgct catgaattac aaggctgcgg
     3901 gtggcggcga cgaggcggag gacgtgcgaa ccgcgctggc cgacagtgtc tacaaagccg
     3961 gatggtcgcc agtttcgtcc gatctggctc agatcatctt tctcgtcggc gacgcgccgc
     4021 cgcacaacga ctacgaaaac accactgaca cgctgaccac ggccgcgaac gccgttcgca
     4081 gcggcatcat cgtcaacacg attcagtgcg gcacgatggg cccgacaaca cgcgcgtggc
     4141 gcgcgattgc ccagcatgga aacgggcaat attttgcgat cgcggacaac ggcggcgtcc
     4201 aggcgatctc gtcgccgtac gacgagcaga tgggtcagct gtcgagtcag ctgggccaga
     4261 ctttcgttcc ttacggattt ggcgacagcg ctgaccctga a
//
LOCUS       DASWTX010001157         2192 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_300946, whole genome shotgun sequence.
ACCESSION   DASWTX010001157 DASWTX010000000
VERSION     DASWTX010001157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2192
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300946"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..541)
                     /gene="pgk"
                     /locus_tag="VGD38_17695"
     CDS             complement(<1..541)
                     /gene="pgk"
                     /locus_tag="VGD38_17695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001036338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEY0729923.1"
                     /translation="MAKLSIKDLPLHGQRVFIRVDFNVPIKDGKVDDDTRIRASLPTI
                     KYAIEQGARVILASHLGRPKGQRVDKYSLRPVAQHLSELLGKPVAFAEDCVGETAAGV
                     VNALSDGDVALLENLRFHPEEEKHDDAFAQQLAALCDVYVNDAFGAAHRAHASTDGIT
                     HHVSKAAAGLLMEKELEYLG"
     gene            complement(546..1553)
                     /gene="gap"
                     /locus_tag="VGD38_17700"
     CDS             complement(546..1553)
                     /gene="gap"
                     /locus_tag="VGD38_17700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011897301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0019682 - glyceraldehyde-3-phosphate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEY0729924.1"
                     /translation="MGVKVGINGFGRIGRNIFRTALGDPDIDFVAVNDLTDTRTLAHL
                     LKYDSVLGNLDQEVTTTENGIKVDNEEFRVFSQRDPAAIDWESVGAEIVVESTGIFTK
                     AEDARKHMRGPVKKVIISAPAKNEDITIVLGVNEEKYDPAAHHVISNASCTTNCLAPV
                     AKVVHEKFGIRSAQMTTIHSYTNDQQLLDLPHKDLRRARAAALSMIPTSTGAAKAVAL
                     VLPELKGKFDGISVRVPTPNVSLVDVVMDLETETTAEDVNRAFKDAANEELRGILAFS
                     EEPLVSTDYKRNPNSSIVDAEYTKVIGGKMLKVLSWYDNEWGYSCRVRDLIKYIAGKG
                     L"
     gene            1896..>2192
                     /locus_tag="VGD38_17705"
     CDS             1896..>2192
                     /locus_tag="VGD38_17705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729925.1"
                     /translation="MVLASVAFVGTTAAFAQVPQSTPRPTPPQGDPTRPPGTTPIPGN
                     PVPQTPTAPPGTTQQSPTTPPGTTPVPGATPVLQQPAGTVPGGSTQQPGEPIREP"
BASE COUNT          475 a          673 c          561 g          483 t
ORIGIN      
        1 gcccgagata ctcgagctct ttctccatca acaacccagc cgcagctttc gacacgtgat
       61 gcgtgatgcc atcagtcgaa gcgtgcgcgc gatgcgcagc gccaaaggcg tcgttcacgt
      121 aaacatcgca aagcgccgcg agctgttgtg caaaagcgtc gtcgtgtttc tcttcttcag
      181 gatggaagcg aaggttctcg agcagcgcca cgtcaccatc agacaaagca ttgacaacac
      241 cggcagcagt ttctccaaca cagtcttcag caaacgcgac cggcttgccc aacaactccg
      301 aaagatgttg cgccaccggc cgcaagctgt acttgtctac acgttgacct ttcggacggc
      361 ccaggtgaga cgcgagaatc acacgcgcgc cctgctcgat cgcgtactta atcgtcggca
      421 atgacgctcg aatgcgcgtg tcgtcgtcaa cctttccatc cttgatcgga acgttgaagt
      481 cgacacggat aaaaacgcgc tgtccgtgaa gcggaagatc tttgatcgag agcttcgcca
      541 cttaactata ggcccttccc cgcgatgtac ttgatcaaat ctcgcacgcg gcacgaatag
      601 ccccactcat tgtcgtacca cgaaagcact ttcaacatct tgccgccgat cactttcgtg
      661 tactccgcat cgacgatcga tgagttcgga ttgcgcttgt agtcggtcga aaccaacggc
      721 tcttccgaga acgccagaat gccgcgcaac tcttcattcg ctgcatcctt gaaagcacga
      781 ttcacgtctt ccgccgtcgt ctccgtctcg aggtccatca ctacgtcaac gagcgaaacg
      841 ttcggcgtcg gcacgcgcac cgagatgccg tcaaactttc ctttcaactc cggcagcaca
      901 agcgccaccg ctttcgccgc gccagtcgaa gtcggaatca tcgacaacgc cgccgcacgc
      961 gcacgccgca gatccttatg aggcaagtca agcagttgct ggtcgttggt gtacgagtga
     1021 atcgtcgtca tctgcgccga acgaatgcca aacttctcgt gcacgacttt cgcgaccggc
     1081 gcgagacagt tcgtcgtaca cgacgcattc gaaatcacgt gatgcgcggc cggatcgtat
     1141 ttctcctcgt taacgccgag cacgatcgtg atgtcttcat tcttggccgg cgcggaaatg
     1201 atgaccttct tcactggacc acgcatgtgc ttccgcgcgt cttcggcttt ggtgaagatg
     1261 ccggtggact caaccactat ttcagcgcca acagattccc aatcgatagc agcaggatct
     1321 cgttgcgaga agacacgaaa ctcttcgttg tcgaccttga ttccgttttc agtcgtcgtg
     1381 acttcctggt ccaaattgcc gagcaccgag tcgtacttca gcaagtgagc gagcgtgcgt
     1441 gtatccgtaa gatcatttac ggctacaaaa tctatgtccg gatcgccgag cgccgtgcga
     1501 aaaatgtttc ggccaatgcg tccgaatccg ttgataccaa ccttcactcc cattctaaaa
     1561 atcctcctgc cgttcggggc acacacgtca tgggttgtgc cgtttttggg attagatctg
     1621 tcgcgattgt gggacacaag tctcgccttt cgccgttggt agtgtcaagc gaggtgttaa
     1681 tagctgcgaa ttgcgggcgt atttcctgaa actgcccttc tgctggtaac gtagtaaatg
     1741 cttgctgcgg cggaccttta tttgccagta tgcgtttgcc agaatgggtt tgccagattt
     1801 ccccttcacc gagcagcggg aactggatgc aatcacactt gaaggagctc tttcgtctga
     1861 tgtttactcg attgtcttat accttagtta gaactttggt tctcgcaagc gtggccttcg
     1921 tgggaacgac tgccgcattc gcgcaagtgc cgcagtcaac gccgcgaccc actccgccgc
     1981 agggcgaccc gacgcggccg ccgggtacaa cgccaattcc cggtaatccc gtaccgcaaa
     2041 ccccgaccgc gccgccgggc acaacgcagc agagtccaac gacaccaccc ggaactactc
     2101 cggtgccggg agcgactcca gtgttacaac aacctgcggg cacggtgccg ggcggcagca
     2161 cacagcaacc gggcgagcca atccgcgagc ca
//
LOCUS       DASWTX010001158         3689 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_171756, whole genome shotgun sequence.
ACCESSION   DASWTX010001158 DASWTX010000000
VERSION     DASWTX010001158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3689
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171756"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..398)
                     /locus_tag="VGD38_17710"
     CDS             complement(<1..398)
                     /locus_tag="VGD38_17710"
                     /inference="COORDINATES: protein motif:HMM:NF016430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor"
                     /protein_id="HEY0729926.1"
                     /translation="MTHKNELSDNDLLRQMLAGDEEALAQLYRRRQASIYRFALQMSG
                     SKSIAEDVTQEVFLFLMRQGHVFDAARGTLSAFLLGVARNHVLRRLRVEHLLSPLADD
                     NEDEGTGFQVTSELCPLEDLTRAETIENVR"
     gene            complement(477..995)
                     /locus_tag="VGD38_17715"
     CDS             complement(477..995)
                     /locus_tag="VGD38_17715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729927.1"
                     /translation="MTRRDQFILDWWTENGNEPAGAAELDQLQQALLETLGAQGRESP
                     ASIARTLADNGVRLKHPEILEADATWREREQFSVFTSEELDFTNIDVAIAFVEKLAGL
                     SPAPELRSFVLQLKVELDASARSMRVPLPDRLVALEVAHWLHIWLQNPAIFADWLPLR
                     LESDEFRERFHR"
     gene            complement(992..1714)
                     /locus_tag="VGD38_17720"
     CDS             complement(992..1714)
                     /locus_tag="VGD38_17720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729928.1"
                     /translation="MRQVLPAALIVMSAAISICGQDQPQTKHNTRPNQAATSAAPPVA
                     NDNKSSDPVKYTYEFTQPKFYVKHIVLEHDANGRGTVTFERLNEDASVSEPIELSPAA
                     LSRINTAWQGLQFLDSTADYQADKQFPHLGTMRIGMERGERKRVAEFNWTNNTNAETL
                     VSEYRKVADQAILLFDISIARQNQPLGVPKLMEAMESLLNRNALSDAQQLLPLLKELS
                     TDERVPLIARNHALRLIKKIQT"
     gene            complement(1728..>3689)
                     /locus_tag="VGD38_17725"
     CDS             complement(1728..>3689)
                     /locus_tag="VGD38_17725"
                     /inference="COORDINATES: protein motif:HMM:NF014516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729929.1"
                     /translation="QSIVVPTPADAVRGAQWLRENNGGRASFLVAGLHGGSDEADTET
                     ITTLACRLEERPALSPGQVESIRDDLRISDLLGAPQQLVTVLKRTLPQKMNARLAANL
                     EDAMVKSIATGEMYVTLNGDWIASGQFVSAGDARALEEGAGLLAFKRELRELETRAET
                     LASEVENANQLAKDARARLVELEDAVVLLNEAIGREERDAMQREHTVSGLDQEVERAE
                     RHMRVVGQDSARVDAERIEVEQRRAQALSEAEAAEAAREAAADQVIKASASLTELRKA
                     AEVESESLAEQRAAAAAAAERRRATTAELRRIEGELADFAARVDRYRMDLAEMDGRSA
                     ELKLSIADLELKASTVESDRAREEEQIATLSQQLHEARRQADEFSSELSDLNRRAAEV
                     RDTRAGLEVQRAEAQARQTFVHENCHSELGQSLEDLAGEITLPEDFDFDTSHARVEEL
                     RTRLDGFGAVNMMALEELAEAEERLLFLSVQRQDIVEGIAATEEALREIKRRSRERFR
                     HAFEQINKNFSVLFQELFGGGRGEMSLIDADDVLESGIDVVAQPPGKRLQNVLLLSGG
                     EKAMAALALVLGIFHYRPAPFCLLDEVDAPLDEANVGRFTDKVVQMSANTQFIVITHN
                     KRTMEMARALYGVTMEEAGVSKLVSVKFE"
BASE COUNT          668 a         1127 c         1109 g          785 t
ORIGIN      
        1 ttgcgcacgt tttcaatcgt ctccgcgcgc gtcagatctt caagcgggca caactccgag
       61 gtgacctgaa accctgtgcc ttcgtcctcg ttgtcatccg ccaacggcga aagcaggtgc
      121 tcgacacgca gccttcgcaa aacgtgattg cgcgcgaccc cgagcaggaa cgcgctcaac
      181 gttccacgcg ctgcgtcaaa cacgtgcccc tgacgcatca ggaacagaaa cacttcctgc
      241 gtcacgtcct cagcaatcga cttcgacccg ctcatctgca gcgcaaaccg gtaaatcgaa
      301 gcctggcggc gccggtaaag ctgggcgagc gcttcttcgt ctccggccag catctggcga
      361 agtaaatcgt tgtcgctgag ctcgtttttg tgggtcattc gcaaacgccg gcgctgattt
      421 tgctcgctgg tcattggtat tcgtgccaac cccggagaaa gttccagaaa gtgtgcttag
      481 cggtgaaaac gttcgcgaaa ctcgtcggat tcgagccgca gcggcagcca atccgcgaaa
      541 atcgccgggt tttgcagcca aatgtgaagc cagtgggcga cttcgagggc gacgaggcgg
      601 tccggcagcg ggacgcgcat gctcctggcg gaagcgtcga gctcgacttt gagttgcagg
      661 acgaaactcc gtaactcagg cgctggagat aaaccggcaa gcttctcgac aaaggcgatg
      721 gccacgtcga tattcgtgaa gtccagctcc tcggaggtga acaccgaaaa ctgctctcgc
      781 tcgcgccagg ttgcgtcagc ttcgaggatc tcgggatgct tgagccggac gccattgtcc
      841 gcgagcgtgc gcgcaatcga agcggggctc tcgcgtccct gcgcgcccaa ggtttcgagc
      901 aatgcttgtt gaagctgatc gagttccgcg gcgcccgccg gctcgttccc gttttcggtc
      961 caccaatcga ggatgaattg gtcgcgcctc gtcacgtctg gatctttttg atgagccgga
     1021 gcgcgtgatt gcgggcgatc agcgggacac gctcatcggt gctgagctct ttgagtagcg
     1081 ggagtagctg ctgggcatcg gagagcgcgt tgcggttgag aagcgactcc atcgcttcca
     1141 tgagtttcgg tacgcccaac ggctgattct gacgagcgat cgagatgtcg aaaagcagaa
     1201 ttgcctggtc ggcgaccttg cgatactcgc tcacgagtgt ttcggcattg gtgttgttgg
     1261 tccaattaaa ctcggccacg cgcttgcgct cgccgcgctc catgccgatg cgcatcgtgc
     1321 cgagatgtgg gaactgtttg tcggcctggt aatccgcggt cgaatcgagg aactgcagac
     1381 cctgccaggc cgtgttgatg cgcgacagtg cggccggtga aagctcgatc ggttcggaga
     1441 cagaagcgtc ttcgttcaag cgttcgaacg tgactgtgcc gcggccgttc gcatcgtgtt
     1501 cgagcacgat gtgtttgacg taaaacttcg gttgcgtgaa ctcgtaggtg tacttaaccg
     1561 gatcggaact cttgttgtcg ttcgcgacgg gcggcgcagc ggaagttgcc gcctgattcg
     1621 ggcgcgtgtt gtgtttggtc tgcggctgat cctggccgca aatggaaatc gccgcgctca
     1681 taacaatcag cgcggcgggg agcacttgcc tcatgatttt ctaatactca ctcaaacttt
     1741 accgacacca gtttcgagac acctgcttcc tccatggtca caccatagag cgcacgtgcc
     1801 atctccatgg tccgcttgtt atgcgtgata acgatgaact gcgtattggc ggacatctgg
     1861 acgaccttat cagtaaagcg tcccacgttc gcttcgtcaa gcggcgcgtc gacttcgtcc
     1921 agcaaacaga acggcgccgg gcggtaatgg aagatgccga ggaccagcgc cagcgcggcc
     1981 atcgccttct caccgccgga cagcagcagt acgttttgca aacgcttgcc gggcggttgc
     2041 gcaacgacgt cgatgcccga ttcgagcacg tcgtcggcgt caatcaaact catctcgccg
     2101 cgtccgccgc caaacaactc ctggaacaac acgctgaaat tcttgttgat ctgttcgaac
     2161 gcgtgacgga aacgctcgcg cgagcggcgc ttgatctcgc gtaacgcttc ttcggtcgcc
     2221 gcaatgcctt cgacgatgtc ctggcgctgc accgacagga acagcagacg ctcttcagct
     2281 tccgcgagct cttcaagcgc catcatgttc acggcgccaa agccgtcgag acgcgtgcgc
     2341 aactcttcga cgcgcgcatg gctcgtgtcg aaatcaaaat cttccgggag cgtgatctcg
     2401 cccgcgagat cttcgagcga ttggcccagc tccgagtgac agttttcgtg aacgaacgtt
     2461 tgacgggctt gcgcttcggc gcgttgcact tcgagaccgg cacgagtgtc gcgcacttca
     2521 gccgcacggc gattgagatc tgacagttca gacgaaaact cgtccgcttg acggcgtgct
     2581 tcgtgcaact gctgcgacag cgtcgcgatc tgctcttctt cacgagcgcg atcgctctcg
     2641 accgtgctcg ctttgagttc gagatccgcg attgagagtt tcagctccgc gctgcggccg
     2701 tccatctcgg caaggtccat gcgatagcga tcgacacgcg cggcgaagtc agcaagttcg
     2761 ccttcaatgc ggcgcagctc ggcagtggtc gcgcgccggc gctcggcagc ggcggccgcg
     2821 gccgcgcgtt gttcggccag cgattcactc tcaacctcag cggcttttcg tagttcagtc
     2881 aacgacgccg acgctttgat cacctgatcc gccgcggctt ctcttgcggc ttcggcggct
     2941 tcagcttcgg acaaagcctg cgcgcggcgc tgttcgactt cgatccgttc ggcgtcgaca
     3001 cgcgcggagt cctgaccgac gacgcgcatg tgacgttcgg cgcgttcgac ttcctggtcc
     3061 aggccgctca cggtgtgctc gcgctgcatc gcgtcgcgct cttcgcgtcc gatggcttcg
     3121 ttcagaagaa caacggcgtc ttcgagttcg accaaacggg cgcgcgcgtc tttcgcgagc
     3181 tgattcgcgt tctcaacttc actggccagt gtttcggcac gtgtttcgag ttctcgcagt
     3241 tcgcgtttga aagccagcag cccagcgcct tcttcgagag cacgcgcatc gccggcgctg
     3301 acgaactgac cgctcgcgat ccaatcgccg ttgagcgtga cgtacatctc gccggtggcg
     3361 atcgacttga ccatcgcgtc ttcaagattc gcggcgagac gcgcgttcat cttctgcggc
     3421 aacgtgcgct tcagcacggt gacgagttgt tgcggcgcgc cgagtagatc cgagatgcgc
     3481 agatcgtcgc gaatgctttc gacctgtccg ggtgatagcg ccggacgttc ttcgagacgg
     3541 caggcgagcg tcgtgatcgt ctcagtgtcg gcctcgtcac tgccgccgtg tagaccggcg
     3601 acgagaaaac tcgcgcgtcc gccgttgttt tcacgcagcc actgagcgcc gcgaaccgcg
     3661 tcggcgggcg tcggcaccac gatcgactg
//
LOCUS       DASWTX010001159         1561 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_209152, whole genome shotgun sequence.
ACCESSION   DASWTX010001159 DASWTX010000000
VERSION     DASWTX010001159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1561
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209152"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(120..557)
                     /locus_tag="VGD38_17730"
     CDS             complement(120..557)
                     /locus_tag="VGD38_17730"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEY0729930.1"
                     /translation="MTGTAKAHAIVIGLALAMGACATPASEQMKSGVVGSVNPEFTVD
                     ARKADVGHDLFGSRGCMGCHSIGHGRLAGPDLFGVTERRTIAWLTSFLKDTNAMLETD
                     PIAQSLLEEFKGSKMPQIKLTDAEIEGVIHYLQRKTNDRREGK"
     gene            complement(685..>1561)
                     /locus_tag="VGD38_17735"
     CDS             complement(685..>1561)
                     /locus_tag="VGD38_17735"
                     /inference="COORDINATES: protein motif:HMM:NF024574.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0729931.1"
                     /translation="TGTFIDLKWFAALLHLENGQLGAARRVITNAQSAHAAVPSQWHR
                     KAFELITDWWMAALPFAYPDSVLEATWRKAASSEVWLWSVKASSEPPITSTDPLWSVL
                     TRQAFGDPSRFEAVRLYTIGTLSLRLRDTTAASTASTSLARLAASSTADWLVRAFDSE
                     LRARRVWHRGDAEDALRILDEIELGPVSVGATNVVPFMAHAQRRYLRGELLIALGRYT
                     EAVPWFASLGSLSVPESPFRGLAQLRQAEIYERLGNRAEAAKYYQQVIELWRDADPEV
                     RPMRDAARLRLGALR"
BASE COUNT          329 a          488 c          432 g          312 t
ORIGIN      
        1 ggactcgacc gaaacgtggt cgattcagtc tattgggaaa cgtgcaatgt ctgcagtgac
       61 gagcatcgca gcgaaataga gcgcgccggt caattcacgc ggcgcgctcc aggtaggctt
      121 tacttacctt cgcgacgatc gttggtcttg cgctgcaagt agtgaatcac gccttcgatc
      181 tccgcatccg tcagcttgat ttgcggcatt ttcgaaccct taaactcctc gagcaacgat
      241 tgcgcgatcg gatccgtctc gagcatcgcg ttcgtgtcct ttagaaacga tgtcagccag
      301 gcgatcgtcc ggcgctcggt cacgccgaac aaatccggcc cggccagccg accgtgacct
      361 atcgaatggc aacccataca gccgcgggag ccaaacagat cgtgaccgac gtctgccttg
      421 cgcgcgtcca ccgtgaattc gggattaact gaccccacca caccactttt catttgttca
      481 gaggctggcg tcgcgcaagc ccccatggcg agtgccaagc cgatcactat ggcgtgcgct
      541 tttgcggtgc ctgtcataaa accctccgta aaggttggtg cgtatccttg atctttggtt
      601 ccgcgacgga ctaagtcaat tgtcgttatt gaaaaaaatt gccgggcggg ccgaacttcg
      661 gtacgccgtc cccccgtcaa cgcttcaacg caaagcacca agacgcagcc gcgccgcgtc
      721 gcgcatcggg cgtacctcgg ggtccgcatc tcgccaaagt tcgattacct gctggtaata
      781 cttagctgct tctgcgcgat ttcctaggcg ttcgtaaatt tccgcttggc gcaactgtgc
      841 aagaccgcga aacggacttt ccgggacgga caacgaaccg agcgatgcaa accatggcac
      901 cgcctccgta tatcggccga gtgcaatcag caattctccg cgcaggtaac ggcgctgcgc
      961 atgggccatg aacgggacta cgttggtggc gccaaccgag accggaccaa gctcaatctc
     1021 gtcgaggatg cggagcgcgt cttcggcgtc gcctctgtgc caaacacgac gtgctcgcaa
     1081 ttcgctgtca aacgcgcgga ccaaccagtc ggccgtgctg gatgcggcga gtcgcgccaa
     1141 cgatgtcgat gccgtgctcg ccgcggtagt atcgcgcaac cgcaacgaca gcgtgccgat
     1201 cgtataaagg cgcacggctt cgaatcggct cggatcgcca aacgcctgcc gagtcaaaac
     1261 agaccacaac gggtccgtgc tcgtgatcgg tggttcagag ctcgccttca ccgaccaaag
     1321 ccaaacctcg ctcgaagcag ctttacgcca tgtcgcttcc aataccgagt cggggtaggc
     1381 aaatggcagc gccgccatcc accagtccgt gatcagctcg aaagccttac gatgccactg
     1441 cgatggtaca gccgcgtgcg cgctttgagc gttcgttatg acacgcctgg cggcgcccag
     1501 ctgcccgttc tccagatgga gcagtgcagc aaaccatttc aagtcgatga aagtacctgt
     1561 g
//
LOCUS       DASWTX010001160         2159 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_125771, whole genome shotgun sequence.
ACCESSION   DASWTX010001160 DASWTX010000000
VERSION     DASWTX010001160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2159
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125771"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2159)
                     /locus_tag="VGD38_17740"
     CDS             complement(<1..>2159)
                     /locus_tag="VGD38_17740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729932.1"
                     /translation="NAEWYRSQLTAEELALATQKNTDGTPKKTAAGHPILDYDAVYPA
                     GHPRAGQPILKMLDANNNIVHTDLNAVITGPNKGRFPAGTYRPNAVEPDRDQPFREFT
                     VVYHDEIKAIQAFPQFEDPVLSHTLYSVKDGFAINYGTGGIGAEILANRFGVGPMANC
                     TECKYEDFFLSAWAVGDPAQVVDVPANTTDGSGNLIKGAKATKVLFPDDPSNVHHSYL
                     NDHVKMRVLHAGPKEHHIHHLHAHQWLNTPDSDNSSYLDSQAMGPGYSFTTEIAHGGS
                     GNRNKTPGDSIFHCHFYPHFAQGMWELWRTHDVFEEGTQLDGDGRPTDGARALPDGEI
                     AKGTPIPAIVPLPTIAMPPMPTAEFKGFPFYVPGVAGHRPPHPPLDTIDDGGLPRHVI
                     VGGEAESVETRLDFNKEILVAEAKAVPETGTPEEIAAMNFHAQKQVASFRPDGTAANF
                     ALNGLPPKPGAPFADPCRDDNGNAFGRARLYKGAAIQLDLKLNNAGWHFPQSRFLTLW
                     GDVAPTLAGTRAPEPIFFRANTNDCITFQHTNLTPHIYELDDFQVRTPTDIMGQHIHL
                     VKFDVTASDGAGNGFNYEDGTFAPDEVLERIHAINAAGGLQAFNSTTKTTLTAKPHPF
                     FGTLGAQTTVQRWFADPTLNLAGKDRTLGTVFSHDHFGPSTHQQAGLYSGLVTEPEGS
                     IWKHNETGEVLGGRFDGGPTTWQAVIQTQNVADSYRE"
BASE COUNT          391 a          601 c          690 g          477 t
ORIGIN      
        1 ctcacgatag ctgtccgcaa cgttttgcgt ctgaatgact gcttgccacg tcgtcggacc
       61 accgtcgaaa cgtccaccga gcacttcgcc ggtttcgttg tgtttccaga tagaaccttc
      121 aggctcagta accagaccgg aataaagacc agcctgctgg tgcgtcgaag gtccgaagtg
      181 atcgtgcgag aagacagtgc cgagcgtgcg atccttgccc gccaaattca gggtcgggtc
      241 agcgaaccag cgctgcacgg ttgtctgcgc gccgagcgtg ccgaagaacg gatgtggttt
      301 ggccgtcaac gtagttttgg tcgtgctgtt gaaggcttgc aaaccgccgg cggcgttgat
      361 ggcgtgaatt cgctcgagga cttcgtcagg agcaaacgtg ccgtcttcat agttgaaacc
      421 gttacccgcg ccgtctgaag cagtcacgtc aaacttcacg aggtgaatgt gctggcccat
      481 gatgtcggtc ggcgtgcgca cctggaagtc gtcgagctcg taaatgtgcg gtgtcaggtt
      541 tgtgtgctgg aacgtaatac agtcgttcgt gttggcgcgg aagaaaatcg gctccggcgc
      601 ccgcgtgccg gccagagtcg gagcgacgtc gccccacagc gtcagaaagc gcgactgcgg
      661 gaagtgccac cctgcgttgt tcaacttgag atcgagctga atcgccgcgc ctttgtaaag
      721 ccgcgcgcgg ccgaacgcat taccgttgtc gtcgcggcag ggatctgcga acggcgctcc
      781 cggttttggc ggcaggccat tcaacgcaaa gttggcggcc gtgccgtcgg gacggaagct
      841 cgcgacctgt ttctgcgcgt ggaagttcat cgccgcgatc tcttcgggcg tgcccgtttc
      901 gggaaccgcc ttcgcttcgg cgactaaaat ttccttgttg aaatcgagac gcgtttcaac
      961 gctctcggct tcaccgccga cgatcacgtg acgcggcaaa ccaccgtcgt cgatcgtgtc
     1021 gagtggcgga tgtggcggac ggtgtccggc gacgccggga acgtaaaacg gaaaaccttt
     1081 gaactctgca gtcggcatcg gaggcatcgc gatcgtcggc agtggaacaa tcgccgggat
     1141 cggagtgcct ttcgcgatct cgccgtcagg cagtgcgcga gcgccatctg ttggacggcc
     1201 atcgccgtcg agttgtgtgc cttcttcaaa gacgtcgtgt gtgcgccaca gctcccacat
     1261 accttgtgcg aagtgcgggt agaagtggca gtggaaaatc gaatcgcccg gcgtcttgtt
     1321 gcgattgcct gagccgccgt gcgcgatttc ggtcgtgaac gaatagcccg ggcccatcgc
     1381 ctggctatcg agatagctcg agttgtcgct gtcgggcgtg ttcaaccact gatgcgcgtg
     1441 caagtggtgg atgtgatgtt ccttcggacc ggcgtgaagc acgcgcatct tcacgtggtc
     1501 gttcaggtaa ctgtgatgaa cgtttgacgg atcgtccggg aacaggacct tggtcgcctt
     1561 cgcgcccttg atcaagttac cgctgccgtc ggttgtgttt gcgggaacgt cgacgacctg
     1621 tgccgggtca cccacggccc acgccgacag gaagaagtct tcgtatttac attcagtgca
     1681 gttggccatc gggccgacgc cgaaacggtt ggcgagaatt tccgcgccga tgccgccggt
     1741 gccgtagttg atggcgaagc cgtctttgac actgtaaagc gtgtgtgaaa gcacgggatc
     1801 ttcaaactgc gggaacgcct ggattgcttt gatctcgtcg tgatagacga cggtgaactc
     1861 gcggaacggc tgatcgcgat caggctccac ggcgtttgga cgataagtgc ccgcgggaaa
     1921 gcggcctttg ttcgggcccg tgataacggc gttcagatcc gtgtgcacga tgttgttgtt
     1981 cgcatcgagc atcttcagga tcggttgacc cgcgcgggga tgtcccgcgg gataaacggc
     2041 gtcgtagtcg agaatcggat gtccggccgc ggttttcttc ggcgtgccgt ccgtgttctt
     2101 ttgtgtcgcg agcgccagct cttcagcagt caactgcgag cgataccact cggcgtttt
//
LOCUS       DASWTX010001161         3185 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_426453, whole genome shotgun sequence.
ACCESSION   DASWTX010001161 DASWTX010000000
VERSION     DASWTX010001161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3185
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_426453"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1407
                     /locus_tag="VGD38_17745"
     CDS             <1..1407
                     /locus_tag="VGD38_17745"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY0729933.1"
                     /translation="KLRATLTTMGVIVGVAVIVTMVSFGLGLQSNMLARFKALDLFNE
                     ILVYGRGLGTLAGLDRPSRRDEDGRRNQESRGNKPPSRILDDTGIKEMGAIEGVAYVE
                     PSVNFQVYVRSNGKLLSQFVGGANIPNAATRFQNFAAGKMISSPTGDEAVVSERFIRD
                     YGYANAADAVGKTIELLAPSSNDQKDQTEEEETPNFFGIPLDEPGIDESALDVETKTF
                     RIAGVLSTEIREGAGQGGMRGMMPSAGIYIPLQLAHEWTTKHRTPMSQVALALARRGG
                     NLAEGQTEGYDSAVVRVTDPVKLQEVRQKITDLGYGSFSIVDELDQIRTVFLIIDSVL
                     GLLGGISLLVASFGIANTMIMSILERTREIGIMKAIGAEDREIKLIFFVEAAVIGVTG
                     GVVGVLLACGIDTLANNLAYRFILKPQGASFIDFFDLPPYLTIGAILFALMVSIAAAL
                     YPASRAARIDPVRALRHD"
     gene            complement(1409..1975)
                     /locus_tag="VGD38_17750"
     CDS             complement(1409..1975)
                     /locus_tag="VGD38_17750"
                     /inference="COORDINATES: protein motif:HMM:NF024183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEY0729934.1"
                     /translation="MDSRYYPNVEIDLPQLTTELRSLFDSEFEVQTFQVSTTSIVQAR
                     KSNTLRDLTGLSSALTIKITPESGGTRVEIGMQKWFDKAAVAAVGAIVFAPLLALAAL
                     GAYWQYKLTEDAWKIVEDHIARKAGGYVPPLPGRCGTCGAANSVGSDFCSSCGANLRV
                     GRNCPSCGHAQKDNTARFCNRCGTSLGG"
     gene            2017..>3185
                     /locus_tag="VGD38_17755"
     CDS             2017..>3185
                     /locus_tag="VGD38_17755"
                     /inference="COORDINATES: protein motif:HMM:NF014301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PA domain-containing protein"
                     /protein_id="HEY0729935.1"
                     /translation="MRTFLILLLQILLFAQPAFAQSAAIDGFNAERAVAQRRWEEVFR
                     AVPTPKSAREHLRRLTLEPHIAGSKEDYATAVYVRDQLRSYGIPAELRQYDVWLNYPN
                     TPPVLELITNKRQPLSTREAVVPGDPSSSHPKITPLFNGYSASGDVTAPVVYANYGLP
                     PDYEELKKAGVDVKGKIVIVRYGNSFRGVKAKVAQDHGAVGCIIYSDPADDGYMQGDV
                     FPKGPWRPVASGQRGSVQYLFDYPGDPLTPGRPAIDGVPRLKPEEATDLTRIPVQPIA
                     YDVAKQIIAPLRGPVRPRGFQGGLPFAYHVGGTDHVKVRLKTDMDYKIRPIWNVVARI
                     EGSTEPNRWIVLGNHRDAWVFGAVDPNSGTSAMLEVGRGLGELLKQGWKPRRTII"
BASE COUNT          640 a          906 c          973 g          666 t
ORIGIN      
        1 aaactgcgcg cgacattgac gacgatgggc gtcattgtcg gcgtggccgt gatcgtcacg
       61 atggtttcgt ttgggcttgg attgcagagc aacatgctcg cgcgtttcaa agcgctcgac
      121 ctgttcaacg agatactcgt atatggacgc gggctcggca cgctcgccgg actcgatcgg
      181 ccttcacgcc gcgatgaaga tggacgccgc aaccaggagt cgcgtggaaa caaaccgccg
      241 tcgcggattc tcgacgacac cggcatcaaa gagatgggcg cgatcgaggg cgtcgcgtac
      301 gtcgagccga gtgtgaattt ccaggtttac gtgcgctcga atggcaagtt gctgagtcag
      361 ttcgtcggcg gcgcaaacat tcccaacgcc gcgactcgct tccaaaactt cgcggcggga
      421 aagatgatct catcgccgac aggcgatgag gcggtcgtgt cggaacgttt cattcgcgat
      481 tacggttatg caaacgcggc ggatgccgtt ggcaaaacga tcgaactgct ggccccgtcg
      541 tcaaacgatc aaaaagatca gaccgaggaa gaggagacgc caaacttctt tggtattccg
      601 ttagacgagc ccggcataga cgagtcagca ctggacgtcg agacgaaaac gtttcgtatc
      661 gccggtgtgt tgagcactga gattcgggaa ggcgcgggtc agggcggcat gcgcggcatg
      721 atgccgagcg ccgggatcta catcccttta cagttggctc acgagtggac cacgaaacat
      781 cgcacgccga tgagccaggt cgcgctcgcg cttgcgcgtc gcggcggaaa tcttgccgaa
      841 ggccagactg aaggttacga ctccgctgtg gtgcgtgtga ccgatccggt gaaacttcag
      901 gaagtgcggc agaagatcac ggatctcggt tacggcagct tttcgatcgt ggatgagttg
      961 gaccagatcc gcactgtgtt cctgatcatc gactcggtgt tgggattact cggcggtatc
     1021 tcgctgctgg tcgcgtcgtt tggcatcgcc aacacgatga tcatgtcgat tctcgaacgc
     1081 acgcgcgaga tcggcatcat gaaagccatc ggcgcggaag accgcgagat caagttgatc
     1141 ttcttcgtcg aagccgccgt gatcggcgtg accggcggcg tggtcggcgt gctcctggcg
     1201 tgcggaatcg acacgctcgc gaacaatctc gcctatcgct tcatcctcaa accgcagggc
     1261 gcatcattca tcgacttctt cgacctgccg ccctatctaa caatcggcgc catcctcttc
     1321 gccctgatgg tctcgatcgc cgctgctttg tatcccgctt ctcgcgcggc acgcatcgat
     1381 cccgtgcgcg cgttacggca cgactaactt atccgccgag cgacgttccg cagcgattac
     1441 agaaacgtgc agtgttgtct ttctgtgcgt gaccgcatga cgggcagttg cgtccgacgc
     1501 gcaagttggc gccgcaggag gaacagaaat ccgaaccaac tgaattagcg gcgccgcagg
     1561 tgccgcagcg gcccggcaat ggtggtacgt agccgcccgc tttgcgcgcg atgtgatctt
     1621 cgactatctt ccacgcgtct tctgtaagtt tgtattgcca gtacgcgccg agcgccgcca
     1681 acgccagcag cggggcgaag acgatcgcgc cgacggcagc gactgcggcc ttgtcgaacc
     1741 acttctgcat gccaatctcc acacgcgtgc cgccagactc gggcgtgatc ttgatcgtta
     1801 acgccgacga gagcccggtc agatcgcgca gtgtgttcga ctttcgcgcc tggacgatgc
     1861 tggtagtcga tacctggaaa gtctgcactt caaactcgct atcaaagaga cttcgcagtt
     1921 cggtagtcag ttgtgggaga tcgatctcta cgtttgggta ataacgactg tccattaatc
     1981 agcttccttt cgctgcagac tcgttcgcat tgtactatga gaacctttct aatccttcta
     2041 ctccagatac ttctgttcgc acagccggcc tttgcacaaa gcgcagccat cgacggtttc
     2101 aacgccgagc gcgcggtggc ccagcgccgc tgggaagaag tgtttcgcgc ggtgcccacg
     2161 ccgaagtcgg ctcgcgaaca cctgcgccgt ctgacactcg agccgcacat cgccggcagt
     2221 aaagaagact acgcgaccgc ggtttacgtg cgcgatcagt tgcgtagtta cggcattccg
     2281 gcggagctca gacagtacga cgtgtggctc aactatccca atacgccgcc ggtgctcgaa
     2341 ttgatcacta ataaacgtca gccgctgagc acacgcgaag ctgtggtgcc cggcgatccg
     2401 tcgtcgtcgc atccgaagat cacgcctttg ttcaatggtt acagcgcgag cggcgatgtg
     2461 accgcgcccg ttgtttatgc gaattacggt ctgccgcctg attacgaaga gttgaaaaaa
     2521 gccggcgtcg acgtcaaagg caagatcgtg atcgtgcgtt acggcaattc gttccgcgga
     2581 gtgaaggcga aggtggcaca ggaccacggc gcggtcggct gcatcatcta ttccgatcct
     2641 gccgacgatg gctacatgca gggcgacgtt tttccgaaag gaccatggcg tccggtcgcg
     2701 tcgggccagc gtggctcggt gcagtacctg tttgattatc cgggcgatcc gttgacgccg
     2761 ggacgtccgg cgattgatgg cgtgccgcgt ttgaaaccgg aagaagcgac tgacctcacg
     2821 cgcatcccgg tccaaccgat tgcttacgac gttgcgaaac agatcatcgc gccgttgcga
     2881 ggaccggtgc ggccgcgtgg atttcaaggt ggactgccgt tcgcgtatca cgtcggtggc
     2941 accgatcatg tgaaggttcg tttgaagacg gacatggatt acaagatccg gccgatctgg
     3001 aacgtggtcg cgcgcattga gggaagcacg gagccgaatc gctggatcgt tctcggcaat
     3061 catcgtgacg cgtgggtgtt tggcgcggtc gatccaaaca gcggcacgtc ggcgatgttg
     3121 gaagtcggcc gtggattggg tgagttgttg aagcagggtt ggaaaccgcg gcgcacgatc
     3181 atttt
//
LOCUS       DASWTX010001162         3724 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_209183, whole genome shotgun sequence.
ACCESSION   DASWTX010001162 DASWTX010000000
VERSION     DASWTX010001162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3724
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209183"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1639
                     /locus_tag="VGD38_17760"
     CDS             <1..1639
                     /locus_tag="VGD38_17760"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0729936.1"
                     /translation="ATLAIGPKYGEIYNTLSHYATITRRTEQAAQLARRATEISPRLW
                     DAHLNLGMALLRLGQMDTGREAVEKAFKGDPFNVWAKNTLDLLDSMRDFKETKRGPFI
                     IKASAQESDVLSPYAANLLEEAAAKLTAKYRFTPKGPIIIEIFQNHEDFAVRTLGMPG
                     LGALGVCFGFVIAQDSPSARDAGEFNWGSTLWHEYTHVITLQMTDYRIPRWFSEGLSV
                     YEERRARPGWGDDWNPMFVSSFAAGRWFKIADLDAAFQRPRNPTDIPIAYFEASQICE
                     FIVEKYGFDAILSMLALYRDKARTPDVLRQVLKLSEADFDREFNAYVETKARPLQQAL
                     STQSNLVASMSKDEVVKQLESRDTFALRIRAAELFAADGDTTTAATHYIRALELFPYV
                     TGKGNPYETLAKLLEQKGDREQAALVLEKLVSKDENNLEALKTVARLRSALGQKQQAL
                     DALVASFYISPFDYHLHKQAGELSVELKNYPQALTEFQAALALQPPNIAEANYNVATA
                     YHALGRQPEAKRAVLRALEAAPRYEKAQELLLRIVGQ"
     gene            1651..2670
                     /locus_tag="VGD38_17765"
     CDS             1651..2670
                     /locus_tag="VGD38_17765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015352718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY0729937.1"
                     /translation="MAVEQLTISDEQLLDKLGTARERLLREIRKAIIGQDEVVEQVLL
                     ALFVGGHSIITGVPGLAKTLLVRTIASVLDLSFKRIQFTPDLMPADITGTEIIEEDRA
                     TGRRALQFIPGPIFANIVLADEINRTPPKTQAALLEAMQEGRVTVQGVSYDLPRPFHV
                     LATQNPIEMEGTYPLPEAQLDRFMFNVRIGYLPEEEEVAVVKQTTSPQDYEFERLMSA
                     DEIIAFQRLVRQVPASDTVTRYAVRLANASRPNTPAAPDFVNKWVTWGASLRASQFLI
                     FGGKARAILRGRYNVACEDVRAVAPAVLRHRVLLNFQAEAEKVDSDQVIKRLIESVPE
                     PKSGL"
     gene            2667..3602
                     /locus_tag="VGD38_17770"
     CDS             2667..3602
                     /locus_tag="VGD38_17770"
                     /inference="COORDINATES: protein motif:HMM:NF017569.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HEY0729938.1"
                     /translation="MSRDIQITQTPDAITTPARFLDPELLARVGSLELLARAVVEGFM
                     SGLHRSPFTGFSTEFTEYRQYNPGDDLRYLDWRLLGRTDRYFIKKYRADTNTQCHLLI
                     DTSASMNYAHASTVTKLDYAKFLAASLAYLLNRQQDAVGMVAFDQKVHTHVPARNRTG
                     HMRTIFGNLSLLQPGGETKLAESLHQLAEILTRRGIVVVISDFYDQADRLQEAFQHLR
                     FKGHDLVAFHVLDQNELDVDFKEPVLLLEDAETQEQMSVLPEVVMSGYRERMQRHVED
                     MRRCAATNHVDYEVLTTKQPLDFALFSFLSRRAGK"
BASE COUNT          807 a         1086 c         1113 g          718 t
ORIGIN      
        1 cgccacactc gcgattggtc caaagtacgg cgagatctac aacacgctct cgcactacgc
       61 cacgatcacg cgccgcacgg aacaagcggc tcagctcgca cgccgcgcaa ccgagatctc
      121 gccgcgcctc tgggacgcac atctcaacct cggcatggcg ttgctgcgac tcggccagat
      181 ggacaccggt cgcgaagcag tcgaaaaggc gttcaaaggc gatccgttca acgtctgggc
      241 caagaacacg ctcgacctgc ttgactcgat gcgcgacttc aaagaaacga agcgtggtcc
      301 attcataatc aaagcgtcag cgcaggaaag tgacgtgctc tcgccctacg ccgcaaacct
      361 tctcgaagaa gcggcggcga agttgaccgc gaagtatcgc ttcacgccga aaggtccgat
      421 catcatcgag atctttcaga accacgaaga cttcgcggtc cgcacgctgg gcatgcccgg
      481 cctgggcgcg ctcggagttt gtttcgggtt cgtgattgcg caggactcgc cgtcggcgcg
      541 tgacgcggga gagttcaact ggggcagcac gctctggcac gagtacacac acgtcatcac
      601 gttgcagatg actgactatc gcatcccgcg ctggttctcc gaaggtcttt ccgtttacga
      661 ggagcggcgc gcgcgtccgg gctggggcga cgattggaac ccgatgtttg tcagcagttt
      721 cgccgccggc cgctggttca agatcgcgga cctcgacgcg gcgtttcaac gaccacgcaa
      781 cccgacggac attccgatcg cgtatttcga agcctcgcag atttgcgagt tcatcgtcga
      841 aaaatacggc tttgacgcga tcctcagcat gctcgcactc tatcgcgaca aggcccgcac
      901 acccgatgtg ttgcgccagg tcttgaaact gagcgaggct gacttcgatc gcgagttcaa
      961 tgcttatgtc gaaacaaaag cgcgcccgtt gcaacaggcg ttgagcaccc agagcaacct
     1021 cgtcgcttcg atgtcgaaag acgaagtcgt gaagcaactc gagtcgcgcg acactttcgc
     1081 gctgcgcatt cgcgccgcag agttgtttgc cgccgacggc gacacaacca cagccgcgac
     1141 tcattacatt cgcgcgctcg aactcttccc ttacgtgact ggaaaaggaa atccgtatga
     1201 gacgctcgcg aagctgctgg aacagaaagg cgatcgcgag caggcggcgc tcgtgctgga
     1261 gaaactggta agcaaagacg aaaacaatct cgaagcactc aaaaccgtcg cgcgtctgcg
     1321 ctcggcgttg ggccaaaagc aacaggcgct cgacgcgctc gtggccagct tttacatcag
     1381 cccattcgat taccacctgc acaaacaggc aggcgagctg agcgtcgagt tgaagaatta
     1441 tccgcaggcg ctgaccgagt tccaggcggc actcgcgcta cagccgccca acattgccga
     1501 agcgaactac aatgtcgcca ctgcgtatca cgcgttgggc cggcaaccgg aagcgaagcg
     1561 cgccgtgctg cgcgcgctcg aagccgcgcc gcgttacgag aaagcacagg aattgttgtt
     1621 gagaatagtt ggacagtaaa acgaggaaac atggcggtcg aacaactcac tatcagcgac
     1681 gagcaactgc tcgacaaact cggcacagcg cgcgagcgcc ttttgcgtga aatcagaaag
     1741 gcaatcatcg gacaggacga agtcgtcgaa caggtgctgc tcgcgctttt tgtcggcggg
     1801 cactcaatca tcaccggcgt gccgggactg gccaagactc ttctcgtgcg cacgatcgcc
     1861 agcgtgctcg atctctcatt caagcgcatt cagttcacac ccgatctgat gccggccgac
     1921 atcaccggca ccgagatcat cgaagaagat cgcgcgaccg gccgccgtgc gctgcaattc
     1981 attcctggtc caatcttcgc caacatcgtg ctcgcagacg agatcaaccg cacgccgccg
     2041 aagacgcaag cggcgctgct cgaagcgatg caggaaggac gcgtgacggt gcagggcgtc
     2101 agttacgatc tgccgcggcc gtttcacgtg ctcgcgacgc agaacccgat cgagatggaa
     2161 ggcacgtatc cgctgcccga agcgcagctc gatcgtttca tgttcaacgt gaggatcgga
     2221 tacctgccgg aagaagaaga ggtcgcggtc gtcaaacaga ccacgtcgcc gcaggattat
     2281 gaatttgaac gcttgatgtc agctgacgag atcatcgcgt ttcaaagact cgtgcggcag
     2341 gtgcccgcgt cggacacggt gacgcgttat gcggtgcgtt tagcgaacgc gagcaggccg
     2401 aacacgcccg cggcgccgga ttttgtgaac aagtgggtga cgtggggcgc gtcgttgcgc
     2461 gcgtcgcagt ttttgatctt cggcggaaag gcgcgcgcga ttctgcgcgg gcgttacaac
     2521 gtcgcgtgtg aagacgtgcg tgcggttgcg cccgcggtgc tcaggcatcg tgtgttgttg
     2581 aacttccagg ccgaggctga gaaggttgac tcggatcagg ttattaagag attgattgaa
     2641 agtgtccccg aaccaaagag cggactgtga gcagagacat acagataacc cagacgcctg
     2701 acgcgataac gactccggcg cggtttctcg acccggagtt gttggcgcgc gtcggatcgc
     2761 ttgagctatt ggcgcgcgcg gtggtcgagg gtttcatgtc gggactgcat cgttcgccgt
     2821 tcacgggatt ctcgacggag ttcacggagt accggcaata caatcccggc gacgacctgc
     2881 gctacctcga ctggcgtctc ctgggccgca cggatcgtta cttcatcaag aagtatcgcg
     2941 ccgacacgaa cacacagtgc cacctgttga ttgatacgag cgcgtcgatg aattacgcgc
     3001 acgcgagtac ggtcacgaag ctcgactacg cgaagtttct cgccgcatca ctggcttact
     3061 tgttgaaccg acaacaggac gccgtcggca tggtggcttt cgatcagaaa gtgcacacgc
     3121 acgtgcccgc gcgcaatcgc accggacaca tgcgcacgat cttcggcaac ctgtcgttgc
     3181 ttcagccggg cggtgagacg aaactcgcgg agtcgttaca tcaactcgcc gagattctga
     3241 cgcgccgcgg catcgtggtc gtgatttccg acttttacga tcaggcggat cgtttgcagg
     3301 aagcgtttca gcatctgcgt ttcaaaggtc acgacctggt tgcgtttcat gtgttggacc
     3361 agaacgagct ggatgtcgat ttcaaagagc cggtgttgtt gctggaagac gcggagacgc
     3421 aggagcagat gtcggtgcta ccggaggtgg tgatgagcgg ataccgtgag cgcatgcagc
     3481 ggcacgtcga ggacatgcgc cgctgcgcgg caacgaatca cgtggattat gaagtgttga
     3541 cgacgaaaca gccgttggat ttcgcgctgt tctcgtttct ctctcgtcgc gcgggtaagt
     3601 aagccacgga taaaacggat agggtatgtc tttcttaacg ccattatttt ttctcggcgt
     3661 ggcggccctc gcggcgccaa tcctggttca tttggtgcgc cgcacccgcg cgcgcaaaat
     3721 tcaa
//
LOCUS       DASWTX010001163         2137 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_171820, whole genome shotgun sequence.
ACCESSION   DASWTX010001163 DASWTX010000000
VERSION     DASWTX010001163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2137
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171820"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1066)
                     /locus_tag="VGD38_17775"
     CDS             complement(<1..1066)
                     /locus_tag="VGD38_17775"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HEY0729939.1"
                     /translation="MTSPRQRLWRYVARYKAVLACGVVCIFIANVGQMLGPIVLRDGI
                     DDLTTGVTQAKLLYYGGAFIAISLVAGFFVFLQRRLIPTVARNFEYDLSNDFYAHLQK
                     LPLAFYQTSRTGDLMSRATSDLAAVRNVVAGALMYAVNTFFAIALILPMMLSMNWRLT
                     LLAFLPLPLVTLTTKIVSKKIHDESTRVQEHFGTVSNRVQESLAGVRVIRAYVQESAE
                     MENYKRVNTELVRRNVKLIHLNSFFVPVVNFIIGIAVVAGVCYGGLLTLRGQLTIGQL
                     FQFILYLEFLIYPMLQLGIIVNYFQRGMASMNRLHEVMSIEPAIADSPHGDAATDIRG
                     EIEFRNLSFTYPGSKEPALKD"
     gene            complement(1072..2070)
                     /locus_tag="VGD38_17780"
     CDS             complement(1072..2070)
                     /locus_tag="VGD38_17780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729940.1"
                     /translation="MKRLAVKELWIGALVFVVLLPGSLASGDTARPPYASGKPMPEPT
                     IFAEGVISTGDFDSHPAFTPDGNTLYFTRSSPSFNFWTIVSTQFKNDKWSAPEVISIS
                     GLHRDADPFITKDGSRFYFISDRPHSDPARKQEKRSLDIWVMEKTGNGWSAPRNLGSP
                     VNSSGEEWYPTVAADGTLYFGSDREGGKGRTDIYRSRFVDGKYLAPENLGESINTQFD
                     EYEPYISPDQSYLIFMAARPDGLGGSDLYISYQQNGQWTKAVNMGDKINSRGSEYSPI
                     VSPDGNYFFWTSTRSLTSPSQPKRRTYSELLTKLRSAGNGLGDIYQIDISALNLLR"
BASE COUNT          470 a          567 c          623 g          477 t
ORIGIN      
        1 tgtccttgag cgcgggctct ttgctgccgg gatacgtgaa agagagattg cggaattcga
       61 tctcgcctcg gatgtctgtt gctgcatcac cgtgagggct gtcggcgatc gcgggctcga
      121 tcgacatcac ttcgtgcaga cggttcatcg aagccatgcc gcgttggaag taattgacga
      181 tgatgccgag ctggagcatt gggtagatca agaattcaag gtaaaggatg aactgaaaga
      241 gctgcccgat cgtcaattga cctctcaacg tgagcagccc gccgtaacag acgcccgcga
      301 cgacggcaat cccgatgatg aaattcacga ccggcacaaa gaacgagttg aggtggatga
      361 gttttacgtt tcgccgcacg agctcggtgt tcacgcgttt gtagttctcc atctccgcgc
      421 tttcctgcac gtacgcgcgg atgacccgca cgcctgcgag cgattcctgc acgcggttgg
      481 agacggttcc gaagtgttcc tgaacgcggg tcgattcgtc gtggattttt ttcgaaacga
      541 tttttgttgt gagcgtgacg agcgggagcg gtagaaacgc gaggagtgtg agccgccagt
      601 tcatcgataa catcatcggc aggatcagtg cgatggcgaa gaatgtgttc actgcgtaca
      661 tcaacgcgcc ggcgacgacg ttacgcacgg ctgcgagatc gctggtcgcg cgagacatca
      721 ggtctcccgt gcgagacgtt tggtagaacg ccagcgggag cttttgcagg tgcgcgtaaa
      781 aatcgtttga gagatcgtac tcgaaattgc gggccacggt tggtatcaga cggcgttgga
      841 ggaaaacgaa gaagccggcg acaaggctga tggcgatgaa ggcgccgccg tagtagagca
      901 gtttcgcttg cgtaacgccg gtggttagat cgtcgatgcc gtcgcgcaaa acgatcggtc
      961 cgagcatctg gcccacgttg gcgatgaaga tacacacgac tccgcaagcc aacacggctt
     1021 tgtagcgggc gacgtagcgc cacaatcttt gacgaggact cgtcatggtg gttagcggag
     1081 gagatttaat gcggagatgt cgatctggta gatgtctccc agcccgttgc ctgcgctgcg
     1141 cagttttgtc aggagttccg aataagtacg ccgttttggt tgtgacgggg aggtcaggct
     1201 tctggtgctg gtccagaaga aataatttcc atcgggagag acgatcggcg aatattcaga
     1261 accgcgtgag ttgatcttgt ctcccatgtt gacggccttg gtccattgcc cgttctgttg
     1321 ataactgatg tagaggtcgg agccgccgag accgtcagga cgcgcggcca tgaagatcag
     1381 gtagctttga tccggtgaga tgtacggctc gtactcgtca aactgagtat tgatgctctc
     1441 gccaagattc tccggagcca aatatttccc atcaacaaac cgcgagcgat aaatatccgt
     1501 gcgtcccttt ccgccttcgc ggtccgagcc gaaatacaac gtgccatccg cagcaacggt
     1561 cggataccac tcttcaccgc tactgttcac cggcgatccc aaattccgcg gcgcactcca
     1621 cccgttgccg gtcttctcca tcacccagat atccaacgac cttttttcct gcttcctggc
     1681 ggggtcactg tgcgggcggt ccgagatgaa gtaaaacctc gatccgtcct tcgtgataaa
     1741 cgggtctgca tcgcggtgta ggcccgagat cgaaatcact tccggcgcac tccacttatc
     1801 gtttttgaat tgcgtggaga cgatggtcca gaagttgaaa ctcggactac tcctcgtgaa
     1861 gtaaagcgtg tttccatctg gcgtgaacgc cggatgagaa tcaaagtcgc cggtggaaat
     1921 cacaccctcg gcaaagatgg tcggctccgg catcggcttg ccggacgcat acggcggccg
     1981 cgccgtatca cctgaggcca acgatcccgg cagcaagaca acgaatacca gcgcgccgat
     2041 ccacaactct tttaccgcta accgtttcat gttcgaagtc tattgccgca gaggcagcac
     2101 gttcagatcg atttgataga tatcgccaag actatta
//
LOCUS       DASWTX010001164         2417 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_13937, whole genome shotgun sequence.
ACCESSION   DASWTX010001164 DASWTX010000000
VERSION     DASWTX010001164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2417
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13937"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1367)
                     /gene="sdhA"
                     /locus_tag="VGD38_17785"
     CDS             complement(<1..1367)
                     /gene="sdhA"
                     /locus_tag="VGD38_17785"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase (quinone) flavoprotein
                     subunit"
                     /protein_id="HEY0729941.1"
                     /translation="MASNGLKIAVVGGGLAGLAAAMKIAEGGHAVDLFSVVPVKRSHS
                     VCAQGGINGAVNTKGEGDSTWEHFDDTVYGGDFLANQPPAKAMCEMAPSIIYLFDRMG
                     VPFSRTPEGLLDFRRFGGTKHHRTAFAGASTGQQLLYALDEQVRRYEVQGKVRKFEHW
                     EMMSLVLDDHQVCRGLVAMDLQTLELKAFPADAVIIATGGPGLIFGKSTNSMVCTGSA
                     VSACYQQGAKYANDEFIQVHPTSIPGEDKLRLMSESARGEGGRVWVPRRERDTRPPSS
                     IPESERWYFLEEKYPAYGNLVPRDIATREIFKVCIDGMGIGGENQVYLDLTHIPADVL
                     DRKLGAILEIYEMFVGDDPRHVPMRIFPGVHYSMGGMWVDYDQRTNIPGLLAAGECDY
                     SIHGANRLGANSLVSCVFGGFVAAPAAIEFAKNVERNGVEGSGIYDRELKMQQEINDR
                     LIKQSG"
     gene            complement(1367..2041)
                     /locus_tag="VGD38_17790"
     CDS             complement(1367..2041)
                     /locus_tag="VGD38_17790"
                     /inference="COORDINATES: protein motif:HMM:TIGR02046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729942.1"
                     /translation="MAIRLSRTFILRKLHQLSGIFPLGIFLLEHFYTNSKALNGAAHF
                     NDAVRDLQSIPYILFVEIGGIFIPLLYHAVYGLVITWESRPNNLAYPYPRNWFYLIQR
                     ITGIILFFFILFHLLNFRFGMVPGLNTISVAHAPEKAFDIVAGEFRMVPIFIIYMIGI
                     TATVWHFANGIWLFLVDWGITIGERAQRLTGYACIAFGVVLLLVGVNAAVAFIRPGGL
                     LGGIIY"
     gene            2153..>2417
                     /locus_tag="VGD38_17795"
     CDS             2153..>2417
                     /locus_tag="VGD38_17795"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HEY0729943.1"
                     /translation="MQNKELYEQSLTKLAELIRKREVSSGEVVEAHLEQISALNPALN
                     AIVTFAGDVSVHAEGPLAGVPVTVKDTIETAGIRTTSGSRIRAD"
BASE COUNT          564 a          673 c          709 g          471 t
ORIGIN      
        1 ccgctctgtt tgatcaaacg gtcgttgatc tcctgctgca ttttcaattc gcgatcgtaa
       61 ataccggagc cctcgacgcc gtttcgttcg acgttcttcg caaactcgat tgccgcaggc
      121 gccgcgacga atccgccaaa gacgcagctc acgagcgaat ttgcgccgag acgattcgcg
      181 ccgtgaatcg agtaatcgca ctcgccggcg gcgagcagac ccggaatgtt cgtgcgttga
      241 tcgtaatcga cccacattcc gcccatcgaa taatggacgc cggggaagat gcgcatcggc
      301 acgtgacgcg gatcgtcgcc gacgaacatt tcataaatct cgagaatcgc gccgagcttt
      361 cgatcgagca cgtccgcggg aatgtgcgtg agatcgagat agacctggtt ctctccgccg
      421 atgcccatgc cgtcgatgca gaccttgaag atctcgcgcg tggcgatgtc gcgcgggacg
      481 aggttgccgt aagcgggata cttctcttcg aggaagtacc agcgttcgct ttcaggaatc
      541 gacgacggcg gccgcgtgtc gcgctccctt cgcggcaccc aaacacgccc gccttcaccg
      601 cgcgctgatt cagacatcag ccgcaacttg tcttcgcccg gaatcgacgt cgggtgaacc
      661 tgaataaact cgtcgttcgc gtacttcgcg ccttgttgat aacaggccga aacagcgctg
      721 ccggtgcaga ccatcgagtt ggtcgacttg ccgaagatga gaccgggtcc gccagtcgcg
      781 atgatcaccg cgtcggcagg aaacgctttc agctcgagcg tctgtagatc catcgcgacg
      841 agtccgcgac acacctgatg atcgtcgagc acgagcgaca tcatttccca gtgctcgaac
      901 ttccgcacct tgccttgcac ttcataacgc cgcacttgtt cgtcgagcgc gtagagcagt
      961 tgttgtccgg tcgatgcgcc ggcaaacgca gtgcggtgat gcttcgtgcc gccgaagcgc
     1021 cggaagtcga gcagtccttc gggcgtacgc gagaagggaa cacccatgcg gtcgaacagg
     1081 taaatgatcg acggcgccat ctcgcacatt gcttttgcgg gcggctgatt agccagaaag
     1141 tcgccgccgt agacggtgtc gtcgaagtgt tcccacgttg aatcgccttc gcctttggtg
     1201 ttgaccgcgc cgttgatgcc gccctgcgcg cacaccgagt gcgaacgttt caccgggacg
     1261 acggaaaaga gatcgaccgc gtgcccgcct tcagcgatct tcatggcggc agccagaccg
     1321 gcgagcccgc caccaacaac cgcgatcttc aaaccgttac ttgccattaa taaatgatgc
     1381 ctcctaacaa tccgccggga cggatgaacg cgacggcggc gttaacgcca acgagcagaa
     1441 gcacgacgcc gaacgcgatg cacgcataac cggtcagacg ttgcgcgcgc tcgccgatcg
     1501 tgatgcccca gtcaacaaga aacaaccaga tgccgttcgc gaagtgccag acggtggcgg
     1561 tgataccgat catgtagatg ataaagatcg gcaccatgcg aaactcgccg gccacgatat
     1621 caaaagcctt ctccggagca tgcgcgaccg agatcgtgtt caagccggga accatgccga
     1681 accggaagtt gagcaggtga aacaggataa agaagaagag aatgattccc gtgatgcgct
     1741 ggatcaggta aaaccagttg cgcgggtacg ggtacgccag gttgtttggg cgcgactccc
     1801 acgtgatcac caggccgtag acggcgtgat acaggagcgg tataaagatg ccgccgattt
     1861 cgacaaacag aatgtacgga atcgactgta gatccctgac cgcgtcgttg aaatgggccg
     1921 cgccgttcaa cgccttcgag ttggtgtaga agtgttctaa aagaaaaata ccaagtggga
     1981 aaataccgga aagctgatgc agcttgcgca ggatgaaagt ccggctcaac cgaatagcca
     2041 agaatgcact cctttgccgt taagcttgaa catcgacgcc agtcgacatg tgtcaggcag
     2101 gttgttaatg agtctgaaaa tagcaattga attatattga gaagttgaag aaatgcaaaa
     2161 caaggaactg tacgaacagt cgctgacaaa actggccgaa ttgattcgga agcgagaggt
     2221 gtcttcgggt gaagttgtgg aggcgcatct ggagcagatt tcggcgttga atccggcgtt
     2281 gaatgcgatc gtcacgttcg caggcgatgt gagcgtccac gcggaggggc ctttagccgg
     2341 agttccggtc acggttaaag acacgatcga gacggcgggt attcggacga cgagtggatc
     2401 gcggatcaga gcggatt
//
LOCUS       DASWTX010001165         2722 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_38443, whole genome shotgun sequence.
ACCESSION   DASWTX010001165 DASWTX010000000
VERSION     DASWTX010001165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2722
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38443"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(58..510)
                     /locus_tag="VGD38_17800"
     CDS             complement(58..510)
                     /locus_tag="VGD38_17800"
                     /inference="COORDINATES: protein motif:HMM:NF015690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF309 domain-containing protein"
                     /protein_id="HEY0729944.1"
                     /translation="MRKGLMADVETEAPYTDAHIAAYPIEYIAGIDLYNAGEFHAAHD
                     AWEERWMDEVGPQEKLFLQAMIQSAVAFHHLDIGRPGAARQMYLRAKEKFARLGCPVF
                     MSLDLENYQAQLDSALSWLLSVPDPRELTRPEIVPPKIRLLAAVDEFE"
     gene            complement(488..1414)
                     /locus_tag="VGD38_17805"
     CDS             complement(488..1414)
                     /locus_tag="VGD38_17805"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY0729945.1"
                     /translation="MHDVIIIGAGPAGLSAAFWCDELGLDTLVLEQADEIGGQLHRVY
                     NPISNYLGLKARNGEELLKHFSVDVEDAGFDLWRGTEIDAIDLRAKRIALRSGEQLQS
                     IAIILATGVRPRRLNLPGEKEFAGKGIIESATRDREQFAGEDVCVIGGGDAAVENALL
                     LAEVCPTVTVVHRGRKLRARREFVERLQPNHAVTVFTESVVTNIFGADRVEAVEILRK
                     EALKPFQLAVRGVLIRIGVEPNTDLFREQLQLDQQGYVAVNSEQETSVTMVFAAGDVS
                     NPVAPTISGATGAGATAAKVIAARLNAQRTHG"
     gene            complement(1407..2426)
                     /locus_tag="VGD38_17810"
     CDS             complement(1407..2426)
                     /locus_tag="VGD38_17810"
                     /inference="COORDINATES: protein motif:HMM:NF042562.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6687 family protein"
                     /protein_id="HEY0729946.1"
                     /translation="MRFEFYTDALENTPKLSVDGTVPNSIHFSHWEGNETPAELRADT
                     STEIALNLVASPDRDSFTNGIDLVTNNHFDCDGVLSCWTVLTGERALEYRELLIAAAE
                     AGDFSEHSSDDGVRVSIAIQGAEQSSPNNDDGSPLAQMLAGREMATRIVENDALAYEL
                     VFPEVERLLTNVNAYEPLWRDGWKAVADALESFDSGRSQVRYFGDVKISVVTLAPDIF
                     HGGGFSPTRHSAPFTAISKYAMGELFLIGIPTNGGWFYRLDYPYYSWAETVVRPMIPR
                     RDLTNALYALNEKETNRNGQWSRDSREMTSAVKFLDKSGGLTPSQLEPDQVLEALRTR
                     QAQHA"
     gene            2477..>2722
                     /locus_tag="VGD38_17815"
     CDS             2477..>2722
                     /locus_tag="VGD38_17815"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEY0729947.1"
                     /translation="MEEITATELKQRLDNGEDIQIIDVREDNEFAFNRIPNAVHIPLG
                     QVLSRMDEIDPNRETVMHCKMGGRSARAIDALQRSGFT"
BASE COUNT          616 a          882 c          670 g          554 t
ORIGIN      
        1 aaaccaagcg gacagcaata tcagtcgggt agaattcaga atgcgcacgg taccttccta
       61 ttcaaactca tcaaccgcag ccaacagccg aatcttcggg ggcacaatct ctggtcgcgt
      121 caactcgcgc gggtcgggaa cacttaacaa ccacgacaac gccgaatcaa gttgcgcctg
      181 gtaattctcg aggtccaacg acatgaacac cggacatccc aaacgcgcaa acttctcttt
      241 cgcacgcaaa tacatctgcc gcgccgcgcc cggacggccg atgtccagat gatgaaacgc
      301 caccgccgat tgaatcatcg cctggagaaa cagtttctcc tgtggtccaa cctcgtccat
      361 ccagcgctct tcccacgcgt catgcgccgc atgaaactcg cccgcgttgt aaagatcgat
      421 gccggcgatg tattcgatcg gatacgccgc gatgtgcgcg tcggtatacg gagcttcagt
      481 ctcgacgtca gccatgagtc ctttgcgcat tcaaccgtgc ggcgatgact ttcgcagcgg
      541 tcgcgcccgc gccggtcgcg ccactgatcg tcggcgctac gggatttgaa acgtcacccg
      601 cggcgaacac catcgtcacg ctcgtttcct gttcgctgtt cacagccaca taaccctgct
      661 ggtccaactg cagctgttcg cgaaacagat ccgtgttcgg ttcgacgccg atgcgaatca
      721 acacgccacg cacggccaac tgaaacggct tcaacgcctc tttgcgcagt atttcaactg
      781 cttcaacacg atcggcgccg aagatattcg tcacgactga ctccgtaaaa acggtcaccg
      841 cgtgatttgg ctgcaaacgc tcgacaaatt cacgccgcgc gcgcagcttc cgcccgcgat
      901 ggaccaccgt cacagtcggg caaacttccg ccagcagtaa cgcattttcc accgccgcat
      961 cgccgccgcc aatcacgcaa acatcctcac ccgcaaactg ttcgcggtcg cgcgtcgcgg
     1021 attcgattat tccttttccc gcaaactctt tctcgcccgg aaggttcaac cttcgcggcc
     1081 gtacgcccgt cgcgaggatg atcgcgatcg actgcaactg ctcgccgctg cgtaacgcaa
     1141 ttcgtttcgc gcgcagatcg atcgcgtcga tctctgttcc gcgccagaga tcaaagcccg
     1201 cgtcctcgac gtctacagag aagtgtttga gtagttcttc tccattacgc gctttcaaac
     1261 caagatagtt actgatcgga ttgtaaacgc gatgcagttg cccgccgatc tcatcggctt
     1321 gttcgagcac gagcgtatcc agccccagtt catcgcacca gaaagccgcg gacaagccgg
     1381 ccggtccagc gccgatgatg atcacgtcat gcatgttgag cctggcgcgt tctcagcgct
     1441 tcgagcactt ggtcaggctc caactgcgag ggcgttaatc caccgctttt atccaaaaac
     1501 ttcaccgctg acgtcatctc gcgactatcc ctgctccatt ggccgttgcg attcgtttcc
     1561 ttctcattta gtgcgtacag cgcgttggtt aggtcgcgtc tcggaatcat cggacgcacc
     1621 acggtttcag cccacgagta gtagggataa tcaagccgat aaaaccaacc accgttcgtc
     1681 ggtattccga tcaggaacag ttcgcccatc gcatacttcg agatcgcggt gaacggagcg
     1741 gaatgtctgg ttggactaaa cccgccgccg tggaaaatat ccggagccag tgtcacgacc
     1801 gagatcttca catcgccgaa gtagcgaacc tgcgatcggc cgctatcaaa actctccaac
     1861 gcatctgcga cagccttcca accgtcgcgc caaagcggct cgtacgcatt gacgttcgtc
     1921 agtaatcgtt caacttccgg aaacaccaac tcatacgcca gcgcatcgtt ctcaacaatg
     1981 cgcgtcgcca tctcgcgccc ggccagcatc tgcgccaacg gcgaaccgtc atcattgttc
     2041 ggactcgact gctccgcgcc ctgtatcgcg atactgaccc gcacgccgtc gtcactcgaa
     2101 tgctctgaaa agtctccggc ttccgcggcc gcgatcaaca actcgcgata ttccagcgcg
     2161 cgttcgccgg tcagcacggt ccaacacgac aacacaccat cacaatcaaa atgattgttc
     2221 gtaaccagat caatcccgtt tgtaaaagaa tcccgatcag gcgacgcgac gagattcagc
     2281 gcgatctccg tcgacgtatc cgcccgcagt tctgcgggcg tctcgttgcc ttcccaatgt
     2341 gagaagtgaa tgctgttggg gaccgtaccg tcgactgaca acttgggcgt gttttcaaga
     2401 gcgtcggtgt aaaattcgaa tctcatgcca gcagagtgta gcgcacgcaa gccgcaaacg
     2461 cgtaagatac cgggccatgg aagagatcac tgcaaccgaa ctaaaacaac gcctcgacaa
     2521 cggcgaagac attcaaatta tcgacgtgcg cgaagataac gaattcgcct tcaaccgcat
     2581 tccaaacgcc gtgcacatcc cgctcggcca ggtgctgtcg cgcatggacg agatcgatcc
     2641 aaaccgcgaa accgtcatgc actgcaagat gggcggacgt agtgcgcgcg ccattgacgc
     2701 gttgcaacgc tccggcttca cc
//
LOCUS       DASWTX010001166         4136 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_187235, whole genome shotgun sequence.
ACCESSION   DASWTX010001166 DASWTX010000000
VERSION     DASWTX010001166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4136
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187235"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1016
                     /locus_tag="VGD38_17820"
     CDS             <1..1016
                     /locus_tag="VGD38_17820"
                     /inference="COORDINATES: protein motif:HMM:NF023165.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3300 domain-containing protein"
                     /protein_id="HEY0729948.1"
                     /translation="KDVLDAIQRMRDKAQDTGALASNQQQKVETQVIESKEVIVIEQA
                     NPEVVYVPSYNPTVVYGAPAYPYPPIYYPPSTGAVIAASAISFGVGWAMGAAWGGGWG
                     WGCGWGGGDIDVNVNNNFNRNTNISGGNRVNNIQGGNRGSGKWQHNPSHRGGAPYGDR
                     NTANRFGGTARGDSLGNRQRAAQRDIGRQGGNLRSNDRAGDRGNRGGVGDRGGVGDRG
                     GIGDRGGNRAGVSDRSSGVGSRGGASGDRVGNRSTSGSSRSSGGGFGRDYGGSGASAR
                     ASSSRGSSSMGGFGGGSRSGSFGGGSRSSGSFGGGSRGGGGGGSRGGGGGGGRGGGGG
                     RRR"
     gene            901..1962
                     /locus_tag="VGD38_17825"
     CDS             901..1962
                     /locus_tag="VGD38_17825"
                     /inference="COORDINATES: protein motif:HMM:NF022892.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2950 domain-containing protein"
                     /protein_id="HEY0729949.1"
                     /translation="MEAVAAAALVVAAEAAVAVAAAVAVVAVVVAAVVAEGGKRVMKP
                     KRVMTTAKTSLCVVLLLACASFTFAQTTAATKAKTFPTAEEAANALVEAAEKYDETAL
                     LQILGPDSYDIIHTGEPARDREVAKQFAEQARVKMNVAQPKNSRRAFLNIGDDDWPFP
                     VPIVKGPSGWSFDTKAGRLEILYRRIGSNELNAIQICRGYVEAQHEYALIKKSAGVNQ
                     YAQRIISTPGKQDGLAWQNPDGKWDGPIGEKVAAAIARGYSSRAEPFHGYFFKVLKGQ
                     GPAAPLGELDFVVKDVMIGGFALVAFPATYRVTGVQTFMVSHDGVVYQKDLGPPTLEL
                     ANAIERFNPDKTWTPVLEQ"
     gene            1965..3452
                     /locus_tag="VGD38_17830"
     CDS             1965..3452
                     /locus_tag="VGD38_17830"
                     /inference="COORDINATES: protein motif:HMM:NF008909.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HEY0729950.1"
                     /translation="MKTRLQILTLIWLAAAAVVNVSAQQQTRTERDLLGEKQIPADAY
                     YGVQTARALENFKLSGVLINHYPGFVEAWAIVKLAAARANADVGAMKPERLAAIEKAT
                     AALRDGRFHDQFLVDWYQGGAGTSTNMNANEVLANVGLELTGRKKGEYQFLEPHDDLN
                     MSQSTNDSYPTALKVAFLLRNDRLTSELQKLVASFRLKGDAFIEIVKMGRTEMQDAVP
                     MTVGQEFHAFASSLEDEIKLLRDAEKYLYTVNMGATAIGTGLNAPKGYAEKCAMHLAK
                     LTGKPIVPAADMLAATWDQQGFVVYSSALKSLAIKLSKIAGDLILLASGPRAGLAERN
                     LPALQPGSSIMPGKVNPVVPEVVNIVAFRVMGNDYSVNLAAHSGQLQLNAYEPLAGLA
                     VMESQSLLNNVSVLLRTKCVDGITTNEQVLSRYMETTVGIVTALNPVLGYEKATELAG
                     EAYRSGKGILEIIREKKILTEQQIKELLDPIKLTNLDKSKYQARP"
     gene            3459..>4136
                     /locus_tag="VGD38_17835"
     CDS             3459..>4136
                     /locus_tag="VGD38_17835"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY0729951.1"
                     /translation="MAQAVAQVSESPSRTGVKIAVVVWVITAVFYFYQYAMRSAPAVM
                     MPELSDAFGISAVGVASIVGLFYYGYSPFSLVAGAAMDRFGPRRLVPFAAMTVGIGAL
                     LFATANPQVASVGRFLQGAGGVFALVGAIYVASKNFPASQAATLIGATQMFGMAGGSA
                     GQFVVGPMIAGGVGWNYFWIGMGVLGLLIGIALFLLIPSEKAPAAANASGGGLKEVAR
                     AFAIVFKN"
BASE COUNT          850 a         1190 c         1343 g          753 t
ORIGIN      
        1 agaaggatgt gctggacgcg atccagcgca tgcgcgacaa ggcgcaggac acgggagcgt
       61 tggcgtcgaa tcaacagcag aaggtcgaga cgcaagtcat cgagagcaag gaagtgatcg
      121 tcatcgaaca ggcaaatccc gaagtggtct acgtgccttc gtacaacccg actgtggttt
      181 atggcgcgcc tgcgtatccg tatccgccga tctattaccc gccttcaacc ggcgccgtga
      241 tcgcggcgag tgcgatctcg ttcggtgttg gttgggccat gggcgctgcg tggggcggcg
      301 gctggggttg gggttgcggc tggggcggcg gcgatatcga cgtcaacgtc aacaacaact
      361 tcaaccgcaa cacgaacatc agcggcggca atcgcgtgaa caacattcag ggcggcaatc
      421 gcggtagcgg caagtggcaa cacaacccgt cgcaccgcgg tggcgcgccg tatggcgatc
      481 gaaatacggc gaaccgcttt ggcggcactg cgcgaggcga ttcgttgggg aaccggcaac
      541 gcgcggcgca acgagacatc ggccggcagg gtggaaatct gcgaagtaat gatcgcgccg
      601 gtgatcgtgg caaccgcggt ggcgtgggcg atcgcggtgg tgtgggcgac agagggggga
      661 ttggagaccg cggcggcaat cgcgccggtg ttagtgaccg cagtagcggc gtcggttcac
      721 gcggtggtgc gagcggcgat cgcgtcggca accgcagcac gtccggcagt tcgcgaagct
      781 cgggcggtgg ttttggccgc gactatggcg gcagcggagc gagcgcgcgc gccagcagca
      841 gccgtggctc gtcgagcatg ggcggcttcg gaggcggcag ccgcagcggc agctttggcg
      901 gtggaagccg tagcagcggc agctttggtg gtggcagccg aggcggcggt ggcggtggca
      961 gccgcggtgg cggtggtggc ggtggtcgtg gcggcggtgg tggccgaagg aggtaaacga
     1021 gtgatgaaac cgaagagagt tatgacaact gcgaaaacga gtctttgtgt cgtgttgctg
     1081 ttggcttgcg cgtcgttcac gttcgcgcag acgactgcgg ccacaaaggc caaaacgttc
     1141 ccgacagccg aagaagcagc gaacgccctc gtcgaagcag cggagaagta cgacgagaca
     1201 gcgctgctcc agattcttgg accagacagc tacgacatca ttcacaccgg tgaacccgcg
     1261 cgcgatcgtg aagttgcgaa gcagtttgcc gagcaggcgc gcgtgaagat gaacgtggcg
     1321 cagccgaaga actcacgccg tgcgttcctg aacatcggcg acgacgattg gccttttccc
     1381 gtgccgatcg tgaagggacc gtcgggctgg tcttttgata ccaaagcggg ccggctggaa
     1441 atcctttacc ggcgcatcgg cagcaacgag ctcaacgcga ttcagatctg ccgcggttac
     1501 gttgaagcac agcacgagta cgcgctgatc aaaaaaagcg caggcgtgaa ccagtatgcg
     1561 caacgcatca tcagcacgcc gggcaaacag gacggcctgg cttggcaaaa ccccgatggc
     1621 aagtgggatg gtccaatcgg cgaaaaagta gccgccgcga tcgcgcgtgg ctattcgtcg
     1681 cgagccgaac cgtttcacgg ctacttcttc aaagtcctga aaggtcaggg gcccgcggcg
     1741 ccgctcggcg agctggactt cgtggtcaag gacgtgatga tcggcggctt cgccctcgta
     1801 gcgtttcccg caacctaccg tgtcaccggc gtgcaaacct tcatggtgag tcacgacggc
     1861 gtggtctatc agaaagacct cggtccgccg actctcgaac tggccaacgc catcgaacgg
     1921 ttcaaccctg acaagacctg gactccggtc ctcgagcagt aaagatgaaa acccgactac
     1981 agatcctgac gctgatctgg ttggccgctg cggctgtcgt aaatgtcagc gcgcagcagc
     2041 agaccaggac cgaacgagac cttctcggcg aaaaacaaat cccggctgac gcgtactacg
     2101 gcgtgcaaac cgcgcgggcg ctcgaaaact tcaaactctc gggcgttctg atcaaccact
     2161 acccggggtt tgtcgaagca tgggccatcg tgaagcttgc cgccgcacgc gccaacgccg
     2221 acgtcggcgc gatgaagccc gaacgcctgg ccgcgatcga aaaagcgacc gccgcgcttc
     2281 gcgacggccg ctttcacgat cagtttctcg tcgactggta ccagggcggc gcgggcactt
     2341 cgacaaacat gaacgccaac gaagtgctcg cgaacgtcgg tctcgaactg accggccgca
     2401 agaaaggcga gtaccagttt ctcgaacccc acgacgatct caacatgtcg cagtcaacca
     2461 acgattccta cccgactgcg ctcaaggtcg catttctcct gcgcaacgat cgtttgacca
     2521 gcgaactgca aaagctcgtc gcgtcgtttc gtttgaaagg cgacgcgttc atcgagatcg
     2581 tcaagatggg ccgcactgaa atgcaggatg cggtgccgat gaccgtgggc caggagttcc
     2641 acgcctttgc ctccagcctt gaagacgaga tcaaactgct tcgcgacgcg gagaagtatt
     2701 tgtacaccgt caacatgggc gcaacggcga tcggcaccgg gctcaacgcg cccaaaggtt
     2761 acgccgaaaa atgcgcgatg catctcgcga agctgacggg caaaccgatc gttcccgccg
     2821 ctgacatgct cgcggcaacg tgggaccagc agggcttcgt cgtctactcg tcggcgttga
     2881 agagtttggc gatcaagctt tcgaagatcg ccggcgatct gatcctgctt gcgtcaggtc
     2941 cgcgtgcggg tctcgccgag cgcaacttgc ctgcgttgca gccgggctcg tcgatcatgc
     3001 cgggcaaggt caatcccgtc gttccggaag tcgtgaacat cgtcgccttt cgcgtgatgg
     3061 gcaacgacta cagcgtgaac ctcgccgcgc acagcgggca gttgcaactc aacgcgtacg
     3121 aaccgctcgc gggtctcgcg gtgatggagt cgcagagcct gctcaacaac gtctccgtcc
     3181 tgctgcgaac gaaatgcgtc gacggcatca cgaccaacga acaagtgctt tcacgttaca
     3241 tggaaaccac cgtcggcatc gtcaccgcgc tcaatccggt gctcggttat gagaaggcga
     3301 cggagcttgc gggcgaagcc tacagatccg ggaagggaat actcgagatc attcgcgaga
     3361 agaagattct caccgagcag cagatcaaag agctgctcga cccgatcaaa ctcaccaacc
     3421 tggataagag caagtatcag gcaaggcctt gatcgaaaat ggcgcaagcg gttgcacagg
     3481 tgagtgaatc tccgtcgcgc actggcgtga agatcgcggt tgtcgtttgg gtaatcacag
     3541 ccgtcttcta tttctaccag tacgcgatgc gctcggcgcc ggcggtgatg atgccggaac
     3601 tttccgatgc gtttggcatc agcgccgtcg gcgtcgcctc gattgtcggg ctcttttatt
     3661 acggttactc gccgttcagt ctcgtggccg gagcggcgat ggatcgcttt ggaccacgcc
     3721 gtctcgtgcc gttcgctgcc atgacagtcg gcatcggagc gttgttgttt gcgactgcaa
     3781 acccacaggt ggcgagtgtg ggcaggtttc tgcaaggggc gggcggcgtc ttcgcactcg
     3841 tcggcgcgat ctacgtcgcg tcgaaaaact ttccggcgtc gcaggcagcg actctcatcg
     3901 gcgcgacgca gatgtttggc atggccggcg gatcggcggg acagtttgta gttggaccaa
     3961 tgatcgctgg cggcgtcggc tggaactatt tctggatcgg gatgggcgtg ctgggcctat
     4021 tgatcggtat cgctctgttc ttactgatac cgagtgaaaa ggcgccggcc gccgcaaatg
     4081 cctccggcgg tggcctgaag gaagttgcgc gagcgtttgc catcgtcttt aagaac
//
LOCUS       DASWTX010001167         4274 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_13967, whole genome shotgun sequence.
ACCESSION   DASWTX010001167 DASWTX010000000
VERSION     DASWTX010001167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4274
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13967"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(84..1577)
                     /locus_tag="VGD38_17840"
     CDS             complement(84..1577)
                     /locus_tag="VGD38_17840"
                     /inference="COORDINATES: protein motif:HMM:NF004837.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HEY0729952.1"
                     /translation="MTLEPRSIPELLQQRASAAPEKVFLLSEADKRQFTYREFEQAVG
                     RVAGMLAARGIGKGDVVSLLLPNSVEYVIAYFACWQLGALAGPVNGHLKQQEIEYVVS
                     NSESKLMLVNSEFLPKVEGSNVPLKVFDNERQAGEGFKESSKANTTLEDEAIIIYTSG
                     TTGKPKGCLLTHGNVIANARQISSWLKITENDRLLTMMPLFHMNAVSVTTMSALYAGG
                     STVVSPKFSASRFWNIISDYQITSFGSVATMLSMLLSTYPEGVPEKLKTDQLRFAMCG
                     SAPVPAEILRRFEETFDCLVVEGYGLSESTCRSTFNPPDERRRPGSCGLPIGNEMRVV
                     DEDDQDVPDGELGEIVLRGENILKGYFKNEAATATAFRNGWFHTGDIGYRDREGFYYI
                     VDRKSDMIIRGGENIYPREIDEVLYQHPQIAAAAVIGVPDELYGEEVAAVVVLKPGAE
                     ISEQDVIEFCKARLADYKCPKTVRFVEDIPKGPTGKLLKRELAQMVR"
     gene            1616..3094
                     /locus_tag="VGD38_17845"
     CDS             1616..3094
                     /locus_tag="VGD38_17845"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY0729953.1"
                     /translation="MDTYRNFINGKWVESASSRTASNINPANTDDVLGTVRQATRDEA
                     RVAVEAAANAFRGWRATPAPTRGRIVAKAARLLEENKEEVAQLLTREEGKTIAESRGE
                     LQRSINVAEFCAGEARRLNGETIPSELPLNFAYTIKQPIGVVACVTPWNVPVAIPVWK
                     IAPALVAGNSVVFKPASLTPATAVRITEIFEAAGIPPGVLNLVLGSGSEAGDEIINHP
                     AVKAISFTGSNGVGIRLYEQASRRGAKVQCEMGGKNPVVVLEDADMDLAVESTAQGAF
                     GSSGQRCTATSRAVVVDQVADQFVERLAKRADSMRLGAGSDPQTEMGPSVDENQFKTV
                     LSYIDIGREDGATLVCGGSRAEGDGLDKGYFVRPTVFDHVTPDRRIARAEIFGPVLSV
                     LRVRDFDHAMEVANDCEYGLSSSIFTNDAARIFRFVDDIETGMTHINSPTTGGEAHVP
                     FGGIKGTGIGDREQGSTALDFYTDLKVVYVDYTGRKREGNLY"
     gene            3142..3567
                     /locus_tag="VGD38_17850"
     CDS             3142..3567
                     /locus_tag="VGD38_17850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729954.1"
                     /translation="MLSATAQNRSQYTSLEVAGYSLTLLEGDLRQNIIVNTPKGTKHS
                     LELWDVISGGFSSIGPKAEWRMTNQNGKLMPTALIIRYNASENPDKPEQRTSYLAVAK
                     ITPNEICITDKIPPSANANADARSAADSAANKPCLKTPE"
     gene            3573..>4274
                     /locus_tag="VGD38_17855"
     CDS             3573..>4274
                     /locus_tag="VGD38_17855"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0729955.1"
                     /translation="MKTLIKNGRVVTAVDDYTADILIEDERVSVIGKTLDMEVDNTID
                     ASGKLVIPGGIDPHTHMELPFGGTESSDDFRTGTIAAAHGGTTTIIDFAVQYKGQSLI
                     EGIDNWHKKAEGKTAIDYGFHLITTELEDKQIEELYTAMDEGVTSFKMFMAYPGVFLV
                     DDATIFRAMSAAGARGGLICMHAENGIVINEIIKRALEQGRTAPKYHALTRPTIAEAE
                     GVHRAIAIAEMAESPV"
BASE COUNT          980 a         1355 c         1127 g          812 t
ORIGIN      
        1 gttttcgccg atcatgatcg gcatctgtgc gctgtggctt ttcggcgcgt ggctgttgga
       61 ccggacgaaa aacgcgggct cgctcagcga accatctggg ccagttccct cttcagcagc
      121 ttcccagtag gtcctttggg aatgtcttca acaaagcgga ctgtctttgg acacttgtag
      181 tccgcgagtc ttgctttaca aaactcgata acatcctgct ccgagatctc cgcgccgggc
      241 ttcaacacga ccacggccgc gacctcttcg ccgtacaact catccggaac accgatcacc
      301 gccgctgcgg cgatctgcgg atgctggtac aacacctcat cgatctcgcg cgggtagatg
      361 ttctcgccgc cgcgaatgat catgtctgac ttgcgatcga cgatgtaata gaagccctct
      421 ctgtcgcgat agccgatgtc gccggtgtga aaccagccgt tgcgaaacgc tgtcgcggtg
      481 gcggcttcgt ttttgaagta gcccttcaga atgttctcgc cgcgcagcac gatctcgccc
      541 aactctccgt caggaacatc ctgatcgtct tcatcaacca cgcgcatctc attgccaatc
      601 ggtaaaccac acgaacccgg ccggcgtcgt tcgtcaggcg gattaaaagt ggagcggcac
      661 gtcgactccg acaatccata accttcaacc acgagacaat caaacgtctc ctcaaaccgg
      721 cgcaagattt ccgcgggcac cggcgcagag ccacacatcg caaagcgcaa ctgatcggtt
      781 ttcaatttct ccggtacgcc ctcggggtaa gtgctcagca acatggatag catagtcgcc
      841 accgagccga acgaagtgat ctgataatcc gagatgatgt tccagaaccg cgacgcggaa
      901 aacttcggac tcacgaccgt cgaaccaccc gcataaagcg ccgacatcgt cgtcaccgaa
      961 acggcattca tatgaaacag cggcatcatc gtgaggagtc gatcgttttc agtaatcttg
     1021 agccacgaac tgatctgccg cgcattcgcg atcacgttcc cgtgcgtcaa caaacacccc
     1081 ttcggcttcc ccgtagttcc ggacgtatag ataatgatcg cctcgtcctc tagcgtcgta
     1141 ttcgctttcg aagattcttt aaatccctcc cccgcttgtc tctcattatc aaaaactttc
     1201 aggggaacgt tactgccctc caccttcggc aaaaactccg agttcaccaa catcaacttc
     1261 gactcggaat tcgaaaccac atactcaatc tcctgctgct tgaggtgtcc gttcaccggc
     1321 ccggcaagcg cgccgagttg ccagcacgca aaatacgcaa tcacgtactc cacgctgttc
     1381 ggcaacaaca aactcaccac gtcgcccttg ccaatcccgc gcgccgcgag cattcccgct
     1441 actcgcccaa ccgcctgttc gaactctcga tacgtgaatt gccgtttgtc ggcttcggaa
     1501 agcaggaaga ctttctcagg cgcagcactg gcccgctgct gcaaaagttc ggggatactc
     1561 cgcggctcca aagtcatgca aactcttata ccacatgata tattccagca ctcttatgga
     1621 tacctaccgc aattttatca acggcaaatg ggttgaatcg gcgtcgtcgc gcacggcctc
     1681 gaacatcaac ccggcgaaca cagacgacgt cctgggaacc gtgcgacaag ccacacgcga
     1741 cgaagcacgc gtggcagttg aagccgccgc aaacgccttt cgcggctggc gcgcaacacc
     1801 cgcgcccacg cgcggccgca tcgtcgccaa agccgcgcga ctactcgagg aaaacaagga
     1861 agaggtcgcg caactactca cgcgcgagga aggcaagacc atcgccgagt cgcgcggtga
     1921 attgcaacgc tcgatcaacg tcgcggagtt ctgcgccggc gaagcgcggc ggctcaacgg
     1981 cgagacgatc ccttccgagt tgccgctcaa cttcgcttac acgatcaaac aaccgatcgg
     2041 cgttgtcgca tgcgtgacgc cgtggaatgt ccccgtggcg ataccggtct ggaagatcgc
     2101 gcccgcactg gtcgccggaa actccgtagt cttcaagccc gcctcgctca cgccggcgac
     2161 cgctgtgcgc atcaccgaga tcttcgaagc ggccggcatt cctccgggcg tgttgaatct
     2221 ggtgctcgga tcgggttccg aagcaggcga cgagatcatc aaccatcccg cggtgaaagc
     2281 gatctctttc accggctcga acggcgtcgg cattcgactt tacgaacaag cctcgcgccg
     2341 cggcgcgaaa gttcaatgcg agatgggcgg aaagaatccg gtcgtcgttc tcgaagatgc
     2401 ggacatggac ctggcagtcg aatcgacggc gcagggcgct tttggttcgt cgggacaacg
     2461 ttgcaccgcg acgagccgtg cggtcgtggt agatcaggtc gcggatcagt ttgtcgagag
     2521 actcgcgaag cgcgctgact cgatgcgact cggcgcggga tcggatccgc aaaccgagat
     2581 gggtccgagt gttgatgaga accagttcaa gaccgtgttg agctacatcg acatcggccg
     2641 cgaagacggt gcgacgctcg tttgcggcgg ttcgcgtgcg gaaggtgacg gactcgacaa
     2701 aggttacttc gtgcgcccga cggtcttcga tcacgtaaca cccgacaggc gaatcgcgcg
     2761 cgcggagatc ttcggacccg tgttgtctgt gctgcgcgtg cgcgatttcg atcacgcgat
     2821 ggaggtggcg aacgactgcg aatacggcct ttcgtcgtca attttcacga acgacgccgc
     2881 ccgcatcttt cgctttgtcg acgatatcga gaccggaatg acgcacatca actcgccgac
     2941 gacgggcggc gaagcgcacg tgccgttcgg cggcatcaag ggcaccggca tcggcgatcg
     3001 cgagcagggc tctaccgcac tcgatttcta cacggatctc aaggtcgttt acgtcgacta
     3061 cacgggccgt aaacgcgagg gtaatctgta ttgaaatccc tgctaaaaac tgttctcgct
     3121 agtggcctct tacttttttg cgtgctgtct gccactgcgc agaaccgcag ccagtacacc
     3181 tctctcgaag tcgccggtta ctctctaaca ttactcgaag gcgatctgcg acagaacatc
     3241 atcgtcaaca cacccaaagg cacgaagcac tccctcgaac tgtgggacgt catcagcggc
     3301 ggcttctcca gtattggtcc aaaagccgag tggcgcatga caaaccaaaa cggcaagctc
     3361 atgcctacag cattaatcat ccgttacaac gcgagcgaaa atcccgacaa gcccgagcag
     3421 cgaacctctt atctcgcagt cgccaaaata actcccaatg aaatctgcat aaccgataaa
     3481 atccccccga gcgcgaacgc caacgccgac gcgcgcagcg ctgccgacag cgccgccaac
     3541 aaaccttgtc ttaaaacacc cgaatagacc ttatgaaaac tctgatcaaa aacggccgcg
     3601 tcgttaccgc cgtcgacgac tacaccgctg acatcctgat cgaagacgaa cgcgtttccg
     3661 tcatcggcaa gaccctcgac atggaagtcg acaacaccat cgacgcgagc ggcaaactcg
     3721 tcatcccggg cggaatcgat ccacacacgc acatggaact gccgttcggc ggcaccgaat
     3781 cttccgacga ctttcgcacc ggcaccatcg cggccgcaca cggcggcacc actaccatca
     3841 tcgacttcgc cgtgcagtac aaaggccagt cgctcatcga aggcatcgac aactggcaca
     3901 agaaagccga aggcaaaacc gcgatcgatt acggcttcca tctcatcacc actgagctcg
     3961 aagacaagca gatcgaagag ctgtacacgg cgatggacga aggcgtgacg agtttcaaaa
     4021 tgttcatggc ctacccgggc gtgttcctcg tcgacgacgc aacgatcttt cgcgcgatgt
     4081 ccgcggccgg cgcacgcggc ggcctgatct gcatgcacgc ggaaaacgga atcgtcatca
     4141 acgagatcat caaacgcgct ttggagcaag gcaggaccgc gccgaagtat cacgccttaa
     4201 cgaggccgac aatcgccgag gcggaaggcg tccatcgcgc catcgcgatc gccgagatgg
     4261 ccgagtcgcc ggtg
//
LOCUS       DASWTX010001168         2195 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_144096, whole genome shotgun sequence.
ACCESSION   DASWTX010001168 DASWTX010000000
VERSION     DASWTX010001168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2195
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144096"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..695)
                     /locus_tag="VGD38_17860"
     CDS             complement(<1..695)
                     /locus_tag="VGD38_17860"
                     /inference="COORDINATES: protein motif:HMM:NF013214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEY0729956.1"
                     /translation="MSWNEQSFAIPGADVRITSFLSKVYGWMFLGLLVTAGTAFVVAS
                     SPLLIETFILNRILFWILLFGQLGLVFYLSMRVEKMSPVTAATLFLIYSATVGITSSV
                     VLLVYTGASLFATFMVTAGMFGALALFGTFTKRSLAGIGQFAFMGLIGVIIASIVGLF
                     WQNDALQFVITIVGVIVFTGLTAWDAQRLKHMAVALPDGRVGAYAVVGALSLYLDFIY
                     LFFFLLRLMGGRR"
     gene            804..1535
                     /locus_tag="VGD38_17865"
     CDS             804..1535
                     /locus_tag="VGD38_17865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729957.1"
                     /translation="MIRRSLLLVVVSLLFAPAALGQFGQSNRLTDAASRLSRDAEDFA
                     SAAYNSYTTSNRNNRNEIEAVMLAQQFGASARIFYRMVVDRRRTQELRDAFDLVQNLA
                     RSVERNNLQRGTWYNVQRSLNDVAREIGDTSGGGGGPFPGDGGGRGGRMTWKGRVDDD
                     VRITIRGGSADVETLGGTPYYDSQPNFGASLPSRRITVRLTSKRGRGEIYIEQQPSRE
                     NDFAVVVRIKDTRGGASDYEFELQW"
     gene            complement(1539..>2195)
                     /locus_tag="VGD38_17870"
     CDS             complement(1539..>2195)
                     /locus_tag="VGD38_17870"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitobiase/beta-hexosaminidase C-terminal
                     domain-containing protein"
                     /protein_id="HEY0729958.1"
                     /translation="PVVAGTRTFRSQSRVDFHNLAPSSSVYYTTDGSEPTAQSTRFLR
                     PFVIDRDATVKARAIDRGGKQSAVVTATFHRIPHDWKITLTSSYSSQYPASGNSTLID
                     GIRGTMNWSGGAWQGYWEKDLEAVVDLGKVQSVSKVGAGFLQDIGSWIRFPRRVEIEL
                     SVDGKSFTPVASIAHDQKDATIVNFTQAITPQNARYIRLRAVNSGKNTWIFADEILIN
                     "
BASE COUNT          517 a          656 c          622 g          400 t
ORIGIN      
        1 tctcttcggc cgcccatcaa ccgcagcagg aagaagaaga ggtagataaa gtcgagatac
       61 agcgacagcg caccaacgac ggcgtaagcc ccgacgcgtc cgtcaggcag cgccaccgcc
      121 atgtgcttca accgctgcgc gtcccacgca gtcagtccgg taaacacgat cacgcccaca
      181 atcgtgatca cgaactgcag cgcgtcattc tgccagaaca gtcccacgat cgaggcgatg
      241 atcacaccga tcaatcccat gaacgcaaac tgcccgatgc ccgccaggct gcgcttcgtg
      301 aaagtgccga agagcgccag cgcgccgaac attcccgccg tcaccatgaa cgtggcaaac
      361 agcgatgcgc ccgtgtaaac cagcaggacg acggatgacg tgatcccgac cgtcgccgag
      421 taaatcagaa agagggtggc cgccgttacc ggcgacatct tttccacccg catcgacagg
      481 tagaacacga gtccaagctg tccaaaaagc aaaatccaga acagtatccg gttgaggata
      541 aacgtctcga tcaaaagcgg cgaggacgcg actacaaaag cggttcccgc cgtgaccagc
      601 aggccgagaa acatccagcc gtaaactttg ctgagaaacg atgtgatgcg gacgtccgca
      661 cccggaatcg caaaagattg ttcattccaa ctcatttagt aactccttgt tggctttgcc
      721 aacggtttca aactggccga cattatagcg taactctgtg gcacaatatc agtggaccga
      781 cagcgaaacg tcaggaggaa cccatgatca gaagaagcct tttgcttgta gttgtcagct
      841 tgctttttgc cccggccgcg ctgggacagt ttggccagtc aaacagactg acagatgccg
      901 cgtcccggct gtcgcgcgac gcggaggatt tcgcgagcgc cgcttacaac agctacacca
      961 cttccaaccg caacaaccgc aacgagattg aagcggtgat gctggctcag cagtttgggg
     1021 cctcggcgag gatcttctat cgcatggtcg tcgaccggcg ccgcacgcag gagctgcgcg
     1081 acgcttttga cctggttcaa aacctggcgc gatctgtcga gcgcaacaat ctccaacgcg
     1141 gtacttggta caacgtacag cgatcgctca atgacgtcgc aagagagatc ggcgacacgt
     1201 cgggtggcgg cggcgggccg tttccgggtg atggcggcgg gcgcggcgga cgcatgacgt
     1261 ggaaagggcg cgtcgacgac gacgtgcgta tcacgattcg cggcggcagc gccgacgttg
     1321 aaacactcgg cggcacgccg tactacgact cgcaaccaaa cttcggcgct tcgctaccgt
     1381 cgcggcgcat aaccgtgcga ctgacgagca aacgcggccg cggcgagata tacatcgagc
     1441 agcaaccgtc acgcgaaaac gatttcgcgg tcgtggtgcg catcaaagac actcgcggcg
     1501 gcgcctcgga ttatgaattt gagttgcagt ggtaggaatt aattgatcag gatctcgtcc
     1561 gcgaagatcc aggtgttctt gccggagttg acggcgcgga ggcggatgta acgcgcgttc
     1621 tggggtgtga tcgcttgggt gaagttcacg atcgtggcgt ccttttgatc gtgggcgatc
     1681 gaggcgacgg gcgtaaaact cttgccgtca actgaaagct cgatctcgac acggcgcggg
     1741 aaccggatcc aggagccaat gtcctggaga aatcccgcgc cgactttcga aacagactgc
     1801 actttcccaa gatctacaac cgcttccaaa tccttctccc aataaccctg ccacgctcca
     1861 ccgctccagt tcatcgtccc gcgaataccg tcaatcaacg tggaattgcc actcgccgga
     1921 tactgcgagc tgtaactcga cgtcaacgtg atcttccagt cgtgcggtat gcgatggaac
     1981 gttgcggtca cgacagcact ctgcttccca ccacggtcaa tcgcgcgcgc cttaacagtc
     2041 gcatcacgat cgatcacgaa cggtcgcaga aacctcgttg actgcgccgt cggctcggaa
     2101 ccgtcggtcg tgtagtaaac agaactcgac ggggcgagat tatggaaatc gactctcgac
     2161 tgggacctga acgtgcgtgt tcctgcgaca acagg
//
LOCUS       DASWTX010001169         3142 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_426565, whole genome shotgun sequence.
ACCESSION   DASWTX010001169 DASWTX010000000
VERSION     DASWTX010001169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3142
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_426565"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            290..1402
                     /locus_tag="VGD38_17875"
     CDS             290..1402
                     /locus_tag="VGD38_17875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729959.1"
                     /translation="MTELFEKFEVNRDSRWAVLLRLLGASLVLHLVFVWLVIYVPAFR
                     DTLNIAAMIANTRFVEEDYVGTEIGGDVEIVQLTSEKFRYPDGYFALEAQIDGRLPAQ
                     AMPSAADPFAPKIISQWNPKTPDPEASPSPSPDASASASPGASPAASASPSAIAQASP
                     AASPAPSAPLSTEDAQKKLEETAKQNSVALPEENQINKKALKDFAAYASDLKKQGKLD
                     LNKPFEIVIEAEMDENGKLQNPRFTKRAGDENLVDLFGRMIAALNDSGFLIYLQPISK
                     DNPGAKVVITVKQGDTEVLASVASETSSTARAETVAGVLNNLLFFGAGSRSGKDEEVI
                     MKNTSATPDGKRVVVNFSMPRQSVVDMIKKQLEPGV"
     gene            1427..>3142
                     /gene="secA"
                     /locus_tag="VGD38_17880"
     CDS             1427..>3142
                     /gene="secA"
                     /locus_tag="VGD38_17880"
                     /inference="COORDINATES: protein motif:HMM:NF009538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0017038 - protein import [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEY0729960.1"
                     /translation="MASFDKFLTKVFGSSNQRFLKSIKPLVEKINSLEPSVQKLSDAE
                     LRARTAAFKEQVQQAVAGVTDKEDRKRRERAVLDELLPEAFAIVREASVRTTGMRHFD
                     VQLIGGIVLHQGKIAEMRTGEGKTLVATLPAYLNALTGRGGVHVVTVNDYLASRDAEW
                     MGQIHRFLGLEVGCIQNDMDDFERQAAYAADITYGTNNEFGFDYLRDNMKFDLATCVQ
                     RGHYFAIVDEVDSILIDEARTPLIISGPSDEATDKYRNADAIIEHLKKGEDIDGKKTG
                     DYVVDEKAHTAVLTEEGVEKAEKLLGVGNLYDPSNMELLHCVEQALKAHTLYKKDHQY
                     VVQDGEVVIVDDFTGRLMKGRRWSDGLHQAVEAKEGVEIEKENQTLATITLQNYFRLY
                     EKLSGMTGTAETEAAEFASTYKLDVIVIPTHMPMVRTDFSDVIYRTLPEKWDAVIEEI
                     KECYEKGQPALVGTVSVENSELIARRLTKEQVPHNVLNAKYHEREAEIVAQAGRKGAV
                     TIATNMAGRGTDILLGGNPDFMAREFLKKDEIDPDEATEDQWRVAFEQARRIVEEEHK
                     EVVALG"
BASE COUNT          751 a          876 c          911 g          604 t
ORIGIN      
        1 tgccgatgcc gtgaagcagt ttcttcacat ctcgcgagtg cgagattttt gccggtggca
       61 gcggcgtcgc gggggttttt cggctgccgg gttttgaacg gtgttttgat cttctatccc
      121 aacgattacg accatttccg cgcatgttgc ccattctagc cgcccgcact gtggcctgcg
      181 aagtgctatc gaagctccgg cgagttacaa ttctgtctca caacgtgtcg aatgatcggg
      241 gcgtctaagc actgaaacaa aaacgccctt gtgacgtttt caatcaagga tgactgagct
      301 gttcgaaaaa tttgaggtta atcgcgactc cagatgggcg gtactgctgc ggcttctcgg
      361 cgcgtcgctc gtactgcatc tggtgttcgt gtggttggtg atttacgtcc cggctttccg
      421 cgatacgctc aacatcgcgg ccatgatcgc gaataccagg tttgtagaag aagactacgt
      481 tggcacggaa atcggcggtg acgtcgagat cgtacagctc accagcgaga agtttcgcta
      541 tccggacggc tacttcgcac tcgaagcaca aatagacggc aggctcccgg cgcaggcaat
      601 gcccagtgcc gctgatccgt ttgcgccgaa gatcatctcg cagtggaacc cgaagacacc
      661 cgatccggaa gcgtcgccgt cgccgagtcc cgatgcgagt gcgagtgctt cgcctggcgc
      721 gagtcccgct gcttcagcat ctccgtccgc gattgcgcaa gcgtcgccag cagcgtctcc
      781 tgcgccgagc gcgccgctga gcactgaaga cgcgcagaag aaactcgaag agaccgcgaa
      841 gcagaacagc gtcgcgttgc cggaagaaaa ccagatcaac aagaaggccc tgaaagattt
      901 tgccgcctac gcaagcgacc tgaaaaagca gggcaagctc gatctgaaca aaccgttcga
      961 gatcgtgatc gaggcggaga tggacgagaa cggcaaactt cagaatccgc gcttcacgaa
     1021 acgcgccggt gacgagaatc tcgtcgacct gtttggccgg atgatcgccg ccttgaacga
     1081 cagcggtttc ctgatctatt tgcaaccgat cagcaaagac aatccgggcg ctaaagtcgt
     1141 catcaccgtg aagcaaggtg ataccgaagt gctcgcgtcg gtggcctcgg aaacgtcgtc
     1201 aacagcgcgg gccgaaacag tcgccggcgt actcaacaac ctgctctttt tcggcgccgg
     1261 ttcgcgttcc ggcaaagacg aagaagtgat aatgaagaac acgagcgcaa cgcccgacgg
     1321 caagagagtc gtagtgaatt tctcgatgcc gcgtcaaagc gttgtcgaca tgatcaagaa
     1381 gcaactggaa cccggagttt aatttagaat agaatcccca atcagtatgg ctagtttcga
     1441 taaatttcta actaaagtat ttggcagcag taaccagcgc ttcctcaaat cgattaagcc
     1501 gctggtcgaa aaaatcaact cactcgaacc atcggttcaa aagctttccg acgctgagct
     1561 acgcgcgcgc accgcagctt ttaaagagca ggtgcagcaa gcggttgccg gcgtcaccga
     1621 caaggaagac cgcaagcgcc gcgagcgcgc agttctcgac gagcttctgc cggaagcgtt
     1681 tgcgattgtt cgtgaagcga gtgtgcgcac cacgggcatg cgccacttcg acgttcagtt
     1741 gatcggcggc atcgtgttgc accagggcaa gatcgctgag atgcgaaccg gtgaaggtaa
     1801 gacgctggtc gctacactgc ctgcatatct aaatgcgttg accggacgcg gcggcgttca
     1861 cgtcgtcacc gtcaacgatt acctcgcttc gcgcgacgcg gagtggatgg gccagattca
     1921 tcgtttcctc ggtctcgaag tcggttgtat tcagaacgac atggacgact tcgaacgcca
     1981 ggcagcttac gccgcggaca tcacttacgg aaccaacaac gagttcggtt tcgactacct
     2041 gcgcgacaac atgaagtttg acctcgccac ctgcgttcag cgtggtcact acttcgccat
     2101 cgtcgacgaa gttgactcga tcctcatcga cgaagcgcgc acaccgctga tcatctccgg
     2161 accttccgac gaagcgaccg acaaataccg caacgcggac gccattatcg aacacctgaa
     2221 aaagggtgag gacatcgacg gcaagaagac cggcgattac gtcgtcgacg aaaaggcgca
     2281 caccgccgtg ttgaccgaag agggcgtcga gaaggcggaa aagttgctcg gagtcggcaa
     2341 tctctacgat ccgtcgaaca tggagttgct ccactgcgtc gagcaggcgt tgaaggcgca
     2401 cacgctttat aaaaaggacc atcagtacgt ggtccaggac ggcgaagtgg tcatcgtcga
     2461 cgacttcacc ggccgcctga tgaaaggccg tcgctggtcc gacggtttgc accaggcagt
     2521 cgaagccaaa gaaggcgtcg agatcgagaa agagaaccaa acgctcgcca cgatcacgct
     2581 gcaaaactac ttccgtcttt acgagaaact ctccggcatg accggtacag ccgaaacgga
     2641 agccgcggag ttcgcctcga cttacaagct cgacgtcatc gtcattccaa cgcacatgcc
     2701 catggtccgc accgacttct ccgacgtgat ctatcgcacg ttgccggaga agtgggacgc
     2761 cgtgatcgaa gagatcaagg agtgttacga gaagggccag cccgcgctgg ttggtacggt
     2821 ttcggttgag aattcggaac tgatcgcgcg gcggttgacg aaagaacaag tcccgcacaa
     2881 cgtgctcaac gcgaagtatc acgagcgcga agccgagatt gtggcccagg ccggacgcaa
     2941 aggcgccgtc acgatcgcca cgaacatggc cggccgcgga accgacatcc tgctcggcgg
     3001 caatcctgat ttcatggcgc gcgagttttt gaagaaggac gagattgatc ctgacgaggc
     3061 gacggaagat cagtggcgag ttgcgtttga gcaggcgagg cgcattgtag aagaagagca
     3121 taaggaagtg gtggcgctgg gc
//
LOCUS       DASWTX010001170         1517 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_14007, whole genome shotgun sequence.
ACCESSION   DASWTX010001170 DASWTX010000000
VERSION     DASWTX010001170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14007"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            251..1267
                     /locus_tag="VGD38_17885"
     CDS             251..1267
                     /locus_tag="VGD38_17885"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEY0729961.1"
                     /translation="MAESFQAVPRGFELPRSSGWLSISAREWRVHGVLFLLTIVTTTL
                     AGMLLVAAPDLPPYDPPLASLLDYLLYIPLGYAHTIIDVIRLGLVEPRVFAEGATFSA
                     SLLAILFSHEMGHYLACRYYKVNATLPFFIPAPPIFLAGTFGAFIKIRSPIPSRRALF
                     DIGLAGPLAGFVVAVPLSVLGVLTMGPPVPPPAEAIYFNDPLLFRLIAKLLRVPLDPN
                     ALPNPYYMAAWIGLLVTSLNLMPVGQLDGGHGTFALFGPRAHRRIAQVAFVSTAALAI
                     LGFYWHHSPSGFLYTLLLAIMLRVPHPAPAVMEPLGAKRIAIALLTLVVFILCFWPFP
                     ITIT"
BASE COUNT          255 a          444 c          455 g          363 t
ORIGIN      
        1 acgcaagcgt ggtgtcggca gaaacccgcg taccggcgaa gaggtggcga ttccgtcggg
       61 caaaacgatt cgcttcaaac ccggcaagga gcttcaggct cacgacggtg gtgacaccgt
      121 gatcgatgac gacgcgggcg acgacgacga tttttagtgt tggatctgga tcagggggat
      181 ttgcttaagg ctagagatgg aagcgagagc atccagactc tggcctttta gcttctaaag
      241 agcgcgtttt atggctgagt cgtttcaagc agtgccgcgg gggtttgaat tgccgaggag
      301 ttcgggctgg ttgtcgatct ccgcgcgcga gtggcgcgtg cacggcgtgc tctttctgct
      361 cacgattgtg accacgacgc tggcggggat gttgctcgtc gccgcgcctg atctgccgcc
      421 gtacgatccg ccgttagcga gtctgctcga ttacctgctc tacataccgc ttggttacgc
      481 tcacacgatc atcgacgtga tcaggttggg tttggtggag cctcgcgtgt tcgcggaggg
      541 cgcaacgttt tccgcgtcgc tgctggcgat tctgttctcg cacgagatgg ggcactacct
      601 cgcgtgccgt tattacaaag tgaacgcgac gttgccgttt ttcattcccg cgccgccgat
      661 ctttttggcg ggaacgtttg gggcgtttat caagattcgt tcgccgatac cttcgcgccg
      721 ggcgctgttt gatatcggac ttgctggtcc gctggcgggg tttgtcgttg ccgtgccgtt
      781 gtcggtgctg ggcgtgttga cgatgggacc gccggtgcca ccgcctgcgg aggcgatcta
      841 cttcaacgac ccgttgctgt ttcgattgat agcgaagcta ctgcgcgtgc cactcgatcc
      901 gaacgcgctg ccgaatccgt actacatggc cgcgtggatt ggtttgctgg tgacaagttt
      961 gaatctgatg ccggtgggcc agctcgacgg cggtcacgga acgtttgcgc tctttggacc
     1021 acgcgcgcat cggcggattg ctcaagtcgc attcgtctcg accgcggctc tcgccattct
     1081 cggcttctat tggcaccaca gcccgagcgg cttcctctac acactgttgt tggcgatcat
     1141 gctgcgcgtc ccgcaccccg cccccgcagt aatggaaccc ctgggcgcca agcgcatcgc
     1201 aatcgccctc ctaaccctcg tggtcttcat cctctgcttc tggccgttcc cgataacgat
     1261 tacgtagcgt cgcccatgac cgtccccgat cacgatcatg gcatcgccga tcatttcacg
     1321 gcgttcccga tcacgaatcc acgcagaacg acaacgccga aggcgttcgc cagttgcagc
     1381 ccatctatga agcggtctcc ggtgtcaaga gaattttagg cacacgctga ccgcgacgcc
     1441 gcggcgcctg cgtttgctct attgataaag ctttgctctg tgacatgaga ctgcgaagta
     1501 aatttaccgc cgtttgc
//
LOCUS       DASWTX010001171         2685 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_171979, whole genome shotgun sequence.
ACCESSION   DASWTX010001171 DASWTX010000000
VERSION     DASWTX010001171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2685
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171979"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..718)
                     /locus_tag="VGD38_17890"
     CDS             complement(<1..718)
                     /locus_tag="VGD38_17890"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family transcriptional regulator"
                     /protein_id="HEY0729962.1"
                     /translation="MRRIDLSNFQVATSETARDINRRIVLNLIRTHQPISRADLARHS
                     GLQRSTVSVIAEQLIKERWITEGANGHTPRGRRPRFLHLNKERVGIIGINVRPVSTTL
                     ALADLDANFLSQDSLATPQDPKQFLAELVPRVHKLMDARTELTCEGIGVSLPGRVDLT
                     TKQIVFAPNLGWRDFDLKTPLEQATGLPVELENAANSCALSEICFGRRAEGLRNLVIV
                     TVSEGIGCGLILNHQLVQGST"
     gene            complement(889..2601)
                     /locus_tag="VGD38_17895"
     CDS             complement(889..2601)
                     /locus_tag="VGD38_17895"
                     /inference="COORDINATES: protein motif:HMM:NF011291.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004819 - glutamine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006425 - glutaminyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase/YqeY domain fusion
                     protein"
                     /protein_id="HEY0729963.1"
                     /translation="MGIETESAETSTESRPSNFIRDIIIEDIKSGKYEGRVQTRFPPE
                     PNGYLHIGHAKAICLDFGLAREFGGKCNLRFDDTNPSKEETKYVDAIQEDVQWLGFQW
                     DGLFYASDYFDQLYEWAIQLIKAGKAYVDDLSADEIREYRGTLTEPGRESPYRNRSVE
                     ENLDLFERMRKGEFPDGARTLRAKIDMSSPNLNFRDPVMYRILHMDHHRTGSKWSIYP
                     MYDYAHGQSDSIEGVTHSMCTLEFDNNRPLYNWFIEQLGIFPSRQYEFDRLALTHTLL
                     SKRKLLKLVEEGHVEDWDDPRMPTLSGMRRRGYTPEAIRNFCASVGVSKTNGITQLQQ
                     LEYFLRQHLNQIVPRVMCVQKPLRVVIENYPDGLVEEMDAINNPEDSSAGTRKIPFSK
                     TLYIEEDDFREDPPKQFYRLAPGREVRLRYAYLITCQEVIKDSNGNIVELRCTYDPAT
                     RGGNTPDGRKVKSTIHWVSVDHALPAEVRVYDNLFVKENPNEVEEGKDFTDNLNPESL
                     QVLRGCKIEPSVRDAAPGTKYQFERLGYYCVDRDSKQELVFNRTIGLRDTWAKIEKRA
                     TSGA"
BASE COUNT          579 a          710 c          733 g          663 t
ORIGIN      
        1 cagtcgatcc ctggaccagt tgatgattga gtatcaggcc gcagccgata ccttccgaga
       61 cggtgacgat gaccaaattc cgcaggcctt cggcacggcg accgaaacag atctcggaaa
      121 gtgcgcagga atttgcagca ttttccagct cgaccggcaa tccggtggcc tgttccagcg
      181 gtgttttcaa atcgaagtct cgccagccga ggtttggcgc aaagacgatc tgtttggttg
      241 ttagatcgac acggccgggg agactcacac cgattccctc gcacgttaat tccgtgcgcg
      301 cgtccatcag tttgtgaacg cgcggcacca gctcagctaa aaactgtttc ggatcttgcg
      361 gagtggcgag tgaatcctgc gaaagaaaat tcgcgtcgag atcggcgagg gccagcgtcg
      421 tgctcaccgg ccgaacattg atcccgataa ttccgacgcg ctctttgttc aggtgcagaa
      481 atcgcggccg ccggcctctt ggcgtatgcc cgttagcgcc ttcagtgatc catctttcct
      541 tgattagctg ctcggcgatg accgagacag tgcttcgctg cagacctgaa tgccgcgcga
      601 ggtcggcacg cgagattggc tggtgcgtac ggatcaggtt gagaacgatg cgtcgattga
      661 tatcgcgcgc agtctcgctc gtagcaacct gaaagttaga cagatcgatt cttcgcatag
      721 ctgaggctct accaccaggc agctccgccg accgtccttt tgtttgtcca atacgattta
      781 attcgtggcg cgaactaata tcacgctatc gagaagcaag tcaacaaaaa aactaacgtg
      841 agctgagtcc ggtagttttg gagtttgggt gagcgattgg gggaatgctc aggcgccgct
      901 cgttgcgcgc ttttcgatct ttgcccacgt gtcgcgaagg ccgatggtcc ggttgaagac
      961 cagttcctgc tttgagtcgc ggtcaacgca gtaataaccc aggcgttcaa actgatactt
     1021 ggtccccggc gccgcgtctc gtacgctcgg ttcgattttg caaccgcgca atacttgcaa
     1081 cgattcagga ttcaggttgt cggtaaagtc cttcccttct tcgacttcgt tcgggttctc
     1141 tttaacgaag aggttgtcgt agacgcggac ctctgcgggt aaagcgtggt ccacagagac
     1201 ccagtgaata gtcgacttta ccttgcgacc atcgggtgtg ttaccaccgc gtgttgccgg
     1261 atcgtaagtg caacgtagtt ctacaatatt gccgttgctg tccttaataa cttcctgaca
     1321 ggtgattaag taagcataac gaagacgcac ctcgcggccg ggggcgagcc ggtaaaactg
     1381 tttcggcgga tcctcgcgga aatcatcttc ttcgatgtaa agcgtctttg aaaaaggaat
     1441 ctttctggtt cccgcggagc tgtcttctgg attgttgata gcgtccatct cttcaaccag
     1501 gccgtcggga tagttttcga tcacgacccg cagtggtttc tgcacacaca tcacgcgcgg
     1561 aacgatttga ttcaggtgtt ggcgcagaaa gtactcgagt tgttgtaact gagtaatgcc
     1621 gttcgtcttc gaaacgccaa cactcgcgca gaagttgcgg atggcttccg gcgtgtaacc
     1681 gcgacgccgc atgccggaca gcgtcggcat acgcggatcg tcccaatctt cgacgtgtcc
     1741 ttcctcaacc aacttcagca gcttacgttt gctgagcaga gtgtgggtga gcgccaaccg
     1801 atcgaattcg tattggcgcg aaggaaatat gccgagctgt tcgatgaacc agttgtagag
     1861 aggacgatta ttgtcgaact cgagcgtaca catcgaatgc gtgacgccct cgatcgaatc
     1921 cgactgcccg tgcgcgtaat cgtacatcgg ataaatggac cacttgctac cggtgcgatg
     1981 gtggtccatg tgcaggatgc gatacatgac cgggtcgcga aagttgagat ttggagagct
     2041 catgtcgatc ttggcccgca gtgttcgcgc gccatccggg aactcgccct ttctcatgcg
     2101 ctcgaacaga tcgagattct cttcgacaga gcggttgcgg tacgggcttt ccctgcccgg
     2161 ctcggttaac gtgccgcgat actcgcgaat ctcatcagcg ctgagatcgt caacgtaagc
     2221 cttaccggcc ttaatcaact gaatggccca ctcgtagagt tggtcgaagt aatcagaggc
     2281 gtagaagagt ccgtcccatt ggaagcccag ccactgcacg tcttcctgaa tagcatcgac
     2341 gtactttgtt tcttcttttg acgggttcgt atcgtcgaaa cgcagattgc acttgccgcc
     2401 gaactcccgc gccaatccga aatcgaggca gatggctttg gcgtgaccga tgtgcaagta
     2461 gccgtttggt tctggaggga atcgggtttg tacccgccct tcatatttac cgctcttaat
     2521 gtcctcgata atgatgtctc taataaaatt tgagggccgc gattctgttg aagtctcggc
     2581 agattcagtc tcaataccca cgtttctgtg ttctccgtct taaattaggc tttaacgcga
     2641 aatgaccaac actgtcgatt cagtgtacaa aatatgatga gcagg
//
LOCUS       DASWTX010001172         1806 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_253254, whole genome shotgun sequence.
ACCESSION   DASWTX010001172 DASWTX010000000
VERSION     DASWTX010001172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1806
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253254"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..449
                     /locus_tag="VGD38_17900"
     CDS             <1..449
                     /locus_tag="VGD38_17900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729964.1"
                     /translation="AWAYRAPQPGHFWHTDIIRQGFQERWNYDFDHDMYVRLLLNGHK
                     CEHLPLPMAAYRLHEVSKTIAEGHRQLEEFDQIAEFYEPQLQGADQRWCRATRFLRLS
                     YAASEAGRKSEAANWLMRALATHPEGLLDRPFWGCLRRLVTTNGHG"
     gene            513..1517
                     /locus_tag="VGD38_17905"
     CDS             513..1517
                     /locus_tag="VGD38_17905"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY0729965.1"
                     /translation="MAEPTRVLVTGAGGFIGHHLTKYLIDRGYWVRGVDIKEPEYEAT
                     AANEFLLLDLSEAENCRRATEGIDEVYGLAANMGGIGFIENNKAIIVRDNTLINLNSI
                     EAARANGVKRYLYTSSACIYPGYKQKETDVTPLREEDAYPADAEDGYGWEKLYMERVC
                     RHYTEDFGLETRVVRFHNIFGPLGTYDGGREKSPAAICRKVALANDGDDIEVWGDGEQ
                     TRSYCYIDDCVEGIYRLMRSDHREPINLGQDRMISVNELVDMVAKIAGKRIGKQYDLT
                     KPQGVRGRNSDNTRLREVLQWEPSVSLEDGLAITYHWIAGQLEKQMSHPQNAQMLTSV
                     "
     gene            1536..>1806
                     /locus_tag="VGD38_17910"
     CDS             1536..>1806
                     /locus_tag="VGD38_17910"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY0729966.1"
                     /translation="MKVSVIVPVRDEEQSIRELLDSLLKQTRPPDEIVITDGGSVDAT
                     PQILDEYIKQGSPVRLLRAGPALPGRGRNLGAAAATYEWLAFTDAG"
BASE COUNT          425 a          483 c          532 g          366 t
ORIGIN      
        1 tcgcgtgggc ctatcgcgcg ccgcagccgg gtcacttctg gcacaccgac atcatccggc
       61 agggatttca ggaacgctgg aattacgatt tcgatcacga catgtacgtc cgtctgctgc
      121 tgaacgggca caagtgcgaa cacctgccgt taccgatggc ggcttaccgg ttgcacgaag
      181 tcagtaagac gattgccgaa ggacaccggc aactcgaaga gttcgatcag attgcggagt
      241 tttacgaacc acagttgcag ggcgccgatc agcgctggtg ccgcgcgact cgttttttgc
      301 ggttgtcgta cgccgcgagt gaagcgggcc ggaagtcgga agcagcgaac tggttgatgc
      361 gcgcgctcgc aactcatccg gagggcttgt tggacagacc gttctggggt tgtcttcgcc
      421 gcctcgtaac aaccaacggc cacggttaat gcaaaaaatg gtaatctaaa cggctatttg
      481 gagctgtttg taacaacaag aggagacgat tgatggctga accgacaaga gtattagtca
      541 ctggggcggg tggttttatc gggcatcacc tcacgaagta tttgatcgat cgtggttatt
      601 gggtccgcgg cgtcgacatc aaggaaccgg aatacgaagc aacagcggcg aacgagtttt
      661 tactgctcga tctttccgaa gccgagaact gccggcgcgc tactgaaggc atcgacgaag
      721 tttacggcct cgccgcaaac atgggcggta tcggattcat tgaaaacaat aaagccatca
      781 tcgttcgcga caatacgctc atcaatctga attcgatcga agccgcgcgc gcaaacggcg
      841 tcaagcgtta tctctacacc tccagcgcgt gcatctatcc cggttacaaa cagaaagaga
      901 ctgacgtcac tccgctaaga gaagaagacg cttatccggc cgacgcagaa gacggttacg
      961 gttgggagaa gctctacatg gagcgggttt gccgtcacta cactgaagac ttcggactcg
     1021 aaacacgcgt cgtgcgtttt cacaacatct tcggtccgtt gggcacttac gacggcggcc
     1081 gcgaaaaatc tccggcggcc atctgccgca aggttgcatt ggccaacgac ggcgacgaca
     1141 tcgaagtttg gggcgacggc gaacagacgc gctcttactg ttatatcgac gactgcgtcg
     1201 aaggcattta tcgtttgatg agaagcgatc atcgcgagcc gatcaacctg ggccaggatc
     1261 ggatgatctc ggtcaacgag ctggtcgaca tggtggcgaa gatcgccggc aagagaatcg
     1321 gcaagcagta cgatctcacc aagccgcagg gcgtcagagg ccggaacagc gacaacacgc
     1381 gcttgcggga agttttgcaa tgggagccgt cggtttcgct ggaagacggt ttggcgatta
     1441 cctaccactg gatcgccggt cagttggaaa aacagatgag ccatccacag aacgcacaga
     1501 tgctgacgtc tgtgtagtcg gtggatcact cgcagatgaa agtcagtgtt attgtcccgg
     1561 tcagggatga agagcaatcc attcgcgagt tgctcgacag cctgctcaag caaacacgcc
     1621 caccagacga gatcgtgatc acggatggtg gttcagtcga cgccacacct cagatactcg
     1681 acgagtacat caagcagggc tcgccggtgc gtttgcttcg cgccggccct gcgctgcccg
     1741 gacgtggacg taatctcggt gcggctgccg ctacttacga atggttggct ttcactgacg
     1801 ccggca
//
LOCUS       DASWTX010001173         2740 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_301198, whole genome shotgun sequence.
ACCESSION   DASWTX010001173 DASWTX010000000
VERSION     DASWTX010001173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2740)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2740)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2740
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301198"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..880
                     /locus_tag="VGD38_17915"
     CDS             <1..880
                     /locus_tag="VGD38_17915"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0729967.1"
                     /translation="YLLNRHLQTHTRGLAHITEDLSAIAKGELARRIILQSSDDARAI
                     ADNINVMTEQMRAQVAREAESRQFDSFVRISAMLTHDLKNAIEGLSLTVSNMERHFDN
                     EQFRIDAMKGLTSATDKLKAIVARLSRPVSSLSGEHKRPTRTDLVPILKRVIAMTAEP
                     VRGQHTIQTNLPDSLFALADAARIEEVIENLLLNAIEAMNGKSGTLRIEAGEDAQGAP
                     SFSVSDTGPGMTRTFIENRLFRPFATTKKNGIGLGLYTCREVIRATGGSIDVQSVEGA
                     GTTFRVVLPSVPQRPA"
     gene            1010..2395
                     /locus_tag="VGD38_17920"
     CDS             1010..2395
                     /locus_tag="VGD38_17920"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY0729968.1"
                     /translation="MSTQTQSKGKVLVVDDDEAVRSGLYWALTSDYHVLQAASREEAC
                     AFINDQEIDVVVSDLHLPPLVNDIVEGLALIDLARAQDPPLQVVVITGSDSKRAALEA
                     VKHGAYGFFEKPLDSAELLHIVNQASRMRQLEIENRRLRDELSRPPGFSHLLGSSGPL
                     ERVLKQARSVAATSATVLLTGENGTGKEMLARAIHQESPRANGPFVAVSCAALPETLI
                     ESELFGHERGAFTSAIQSRKGRFELANGGTLFLDEIGELSAAVQVKLLRVLQEREFER
                     VGGTRTLTVDIRLIAASNRDLEQEVKEGRFRQDLFFRLNVVPLALPPLRDRPEDIPLL
                     AAHFAAKAAEKHGQPSPELAPELIEVLQEYEWPGNVRELENLIERLVVLSTGSSLGIE
                     FVPEKMLRALPGTSTSDESTLEGAVATLKRKMIVSALQTEGNKVAAAKKLGISRSYLH
                     RLINEFDIKSV"
     gene            2406..>2740
                     /locus_tag="VGD38_17925"
     CDS             2406..>2740
                     /locus_tag="VGD38_17925"
                     /inference="COORDINATES: protein motif:HMM:NF024763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HEY0729969.1"
                     /translation="MASLQQRLPENVPGDFFVDSTCIDCDTCSQLAPAIFRDHGDQCS
                     VYHQPENEAETKRAMMALVACPTGSIGTVERHNAHIGIDEFPLLLDENVYFCGFTAES
                     SFGAWSYLIT"
BASE COUNT          595 a          784 c          836 g          525 t
ORIGIN      
        1 ttacctgctc aatcgacact tgcaaacaca cacccgcggt ctcgcgcaca tcaccgaaga
       61 cctttcagcg atcgcgaaag gcgaactggc ccgccgcatc attcttcaat caagcgacga
      121 cgcgcgcgcc atcgccgata acatcaacgt catgaccgaa cagatgcgtg cacaggtcgc
      181 gcgcgaagcg gagtcgcggc agtttgattc gttcgtcaga atctccgcga tgctgactca
      241 cgatctgaaa aacgcgatcg aaggtctgtc gctgacggtc agcaacatgg aacgccactt
      301 cgataacgaa cagtttcgta tcgacgcgat gaaaggcctg accagcgcga ccgacaagct
      361 caaagccatc gtcgcgcgcc tcagccggcc cgtcagcagt ttgagcggcg aacacaagcg
      421 tcccaccagg accgatctcg tgccgattct gaaacgcgtg atcgccatga ccgcggaacc
      481 tgtccgcggc cagcacacga tccaaaccaa cctgcctgac agtctcttcg cactcgccga
      541 cgccgcgcgg atcgaggaag tgatcgaaaa cctgctcctc aacgcgatcg aagcgatgaa
      601 cggcaaaagc ggcacgctcc gcatcgaagc gggcgaagac gcgcagggcg cgccgtcgtt
      661 ctccgtcagc gacactggac caggcatgac ccgcacgttc atcgagaacc ggctcttccg
      721 cccattcgcc accaccaaga aaaacggcat cggactcggt ctttacacct gccgcgaggt
      781 gattcgcgcc accggcggct cgattgacgt gcaatcagtc gaaggcgctg gaacgacctt
      841 tcgcgtcgtg ctaccatccg ttccacaacg accggcgtaa ccaaagaagg aagcggcaac
      901 ccttcttcaa tgcataccgt tacgcagaac ctctgcagta cctgcccagg agttcgctgc
      961 caacatgtgt gcggcggagt ctctgtagtc tggaaatgcg atttcgagaa tgagcacgca
     1021 aacacagtcc aaaggcaaag tgctcgtcgt cgatgacgac gaggcagtgc gcagtggctt
     1081 gtactgggcg ttgacctccg attatcacgt cctgcaggct gcgtcgcgcg aagaggcgtg
     1141 cgcgtttatc aacgaccagg agatcgacgt ggtggtcagc gatcttcact tgccgccgtt
     1201 ggtgaacgac atcgttgaag gactggcgtt gatcgatctg gctcgcgcgc aggatccgcc
     1261 gctgcaagtc gtggtgatca cgggcagcga ctcgaagcgc gcggcgttgg aagcggtgaa
     1321 gcatggcgcg tacgggttct ttgaaaagcc gctcgactcg gctgagcttt tgcacatcgt
     1381 gaaccaggcg tcgcggatgc ggcagttgga gatcgagaac cgtcgcttgc gtgacgagtt
     1441 gtcgcgtccg cccgggtttt cgcacctgct cggcagcagt ggtccattgg agcgcgtttt
     1501 gaaacaggcg cgatctgtgg cggcgacgag tgcgaccgtt ttgttgaccg gcgagaacgg
     1561 caccggcaag gagatgctgg cgcgcgcgat tcatcaggag agcccgcgtg cgaatggacc
     1621 gtttgtggct gtgagttgtg cggcgttgcc ggagacgttg attgagtcgg aactgtttgg
     1681 acacgagcgc ggcgcgttca cgtccgcaat tcaatctcgc aagggccgtt ttgaactggc
     1741 gaacggcgga acgttgtttc tcgacgagat aggcgagctg agtgcggcgg tgcaagtgaa
     1801 actgctgcgc gtgctgcagg aacgcgagtt tgagcgcgtg ggcggaacga gaacgttgac
     1861 ggtcgatatt cgcttgatcg cggcgagcaa tcgcgacctc gaacaggaag ttaaagaagg
     1921 acgctttcgt caggatcttt tcttccgttt gaacgttgtg ccgctggcgt tgccgccgtt
     1981 gcgcgatcgt ccggaagaca ttccgcttct cgcggcacac tttgccgcga aagccgcgga
     2041 gaaacatggg caaccgtcgc cggagctcgc gcccgaactg atcgaagtgc ttcaggaata
     2101 cgaatggccg ggtaacgtgc gcgagctcga aaacctgatc gagcggctcg tcgtgctgag
     2161 caccggatcg tcgctcggta tcgagtttgt gccggaaaag atgctgcgcg cgctgccggg
     2221 gacgagcaca agcgacgagt caacgctgga aggcgcggtg gccacgttga agcgaaagat
     2281 gatcgtcagc gccctgcaga cggaaggaaa taaggttgcc gcggccaaga aattgggcat
     2341 cagtagatcc tacctgcacc gcctcatcaa tgaattcgac atcaagtctg tataatcaat
     2401 gcgtaatggc aagtctgcaa caacgcttac cggagaacgt gccgggggat ttcttcgtcg
     2461 actccacctg catcgactgt gacacgtgca gccagctcgc gcccgcgatc tttcgcgatc
     2521 acggcgacca gtgcagcgtc tatcaccaac ccgaaaacga agctgagaca aagcgcgcga
     2581 tgatggcgct ggttgcgtgt ccgacgggat ccatcggaac ggtcgagcgg cacaacgcgc
     2641 acatcgggat tgacgagttc cctctgctgc tcgatgagaa tgtttatttt tgtgggttta
     2701 cggctgaatc gagttttggc gcgtggagtt atttgattac
//
LOCUS       DASWTX010001174         2957 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_276691, whole genome shotgun sequence.
ACCESSION   DASWTX010001174 DASWTX010000000
VERSION     DASWTX010001174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2957
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_276691"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(280..1347)
                     /locus_tag="VGD38_17930"
     CDS             complement(280..1347)
                     /locus_tag="VGD38_17930"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY0729970.1"
                     /translation="MEYKTLGNTGLLVSTLCFGTMTFSGEGMWEAIGTVDQAGADELI
                     KTSIDAGVNFIDTADIYSEGRSETTLGQSLKNLGIARSDVVIATKVAGRSGLGRNAVG
                     ASRGHIMDSVEGSLRRLQTDYIDLYQIHANDPITPIEETLHALDTLVRQGKVRYVGCS
                     NWQAWKIARSIGISELKNFVRFETLQAYYSIASRDLERELVPLMEAEKIGLLVWSPLA
                     GGLLSGKYSRNNQKPQDSRRSEFDFPLVDKERTWNILDAIAPIAKAHNCSAARIALAW
                     LLTRPVVTSVIIGAKRLDQLQDNLAAVDVKLSADEIRVLDEVSALPPEYPGWMLDFQA
                     LDRLAPITEPRFEKYSTAEQA"
     gene            complement(1364..1978)
                     /locus_tag="VGD38_17935"
     CDS             complement(1364..1978)
                     /locus_tag="VGD38_17935"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEY0729971.1"
                     /translation="MGQSSSQPQIGILILAAGSSTRLGVGATPKQLLVYKGQTLIRRA
                     AETALGSVCRPVVVVLGANAVAVGAELELPLIVTRNHEWETGMASSLRVGLEAVLAAA
                     GDIDAVVVLLCDQPFVTTELIDTLIERRRETGRTIVASEYNDARGVPALFARELFAEL
                     RELSGHEGARQIIRKHPHDTVAVAFAGAAIDIDTRDDYLALCRA"
     gene            complement(1995..>2957)
                     /locus_tag="VGD38_17940"
     CDS             complement(1995..>2957)
                     /locus_tag="VGD38_17940"
                     /inference="COORDINATES: protein motif:HMM:NF024869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC/CoxI family protein"
                     /protein_id="HEY0729972.1"
                     /translation="GEPMVVTYDTTSDEDIVWGLGLGCRGVVQVLIEPASDFRCAGLV
                     QLLADSEKSAQCGAVATVIRCEGETEVEIGARALLYPDGKSGSEAGFYRMFCGPEVVD
                     ELRAAVRGGGSGVSRYEGEHESVEVFIEVIEPPLPLVIVGAGDDALPLVTIAKNLGWH
                     TTVVDTRSRPAMVERFNEADEVVLCRAEDVCDRVRLTDRTAVVLMTHNYLQDLEVLRT
                     LLNTPLRYLGCLGPRQRTEQMLLEISDEIAFLKQLYAPAGLDIGADTPIEVAFSIVSE
                     IKAVVAGREGGLLRLRRGPIHAPAPRAAIRSFESLKIQCEVAVA"
BASE COUNT          669 a         1020 c          701 g          567 t
ORIGIN      
        1 accgttcata tccaacctac cccccactct ctcacagcgt caatcccacc gactttgtcg
       61 gtggtagtgg gcgcgtcgca actgatgcgg ttgggggaag tgggacagag ccacaaccac
      121 caacatacag ccgtcgctga aaaaggaact cacacttggt cggaactcac acttggtcgg
      181 aacccacact tggtcggaac ccacacttgg tcgatcatcc atgcactcgt ggatcctcga
      241 tgggtctgat tgaccctaac atcctcaacc tacaaaaccc tacgcctgct ccgcggttga
      301 atatttctcg aaccgcggct cggtgatcgg ggcgaggcgg tcgagggcct ggaagtccag
      361 catccagccc gggtactccg gtgggagggc gctcacttca tcaagcacgc ggatctcatc
      421 cgcggaaagc ttcacgtcca ccgccgcgag gttgtcctgc aactggtcca ggcgcttcgc
      481 gccgatgatt actgacgtca ccaccggccg cgtcagcaac cacgcgagcg cgatgcgcgc
      541 ggcgctacag ttgtgcgctt tcgcgatggg cgcgatcgcg tcgaggatgt tccaggtgcg
      601 ctccttgtcc actagcggga aatcaaactc cgaacgacgc gagtcctgcg gcttctgatt
      661 attccggctg tatttaccag acaacaaacc acccgccaac ggactccaaa ccagcaatcc
      721 aatcttctcc gcctccatca acggaaccag ctcacgctcg aggtcgcggc tcgcgatcga
      781 gtaataagcc tgcagcgtct cgaagcgaac gaaattcttc aactcagaaa tcccaatcga
      841 tcgcgcaatc ttccacgcct gccagttcga acaaccgaca taacgcacct taccctgacg
      901 caccagcgta tccaacgcat gaagcgtctc ttcaatcggc gttatcggat cgttcgcatg
      961 aatctggtag aggtcgatgt agtcagtctg aagccgccgc aaacttccct ccaccgaatc
     1021 cataatgtgc ccgcgcgacg cgccaaccgc gttgcgcccc aaccccgaac gtcccgcaac
     1081 tttcgtcgca atcaccacat ccgatcgcgc aatcccgaga ttcttcagcg actgcccgag
     1141 agtcgtttca ctgcgccctt cggaataaat gtccgccgtg tcgatgaagt taacaccagc
     1201 atcgatcgac gtcttgatca actcatcggc tcccgcctgg tccacagtgc cgattgcttc
     1261 ccacattccc tcgccgctaa acgtcatcgt gccgaagcac aacgtcgaaa ccagcagccc
     1321 cgtatttccc aaagtcttgt attccatttc ttcccctctt taatcatgcg cgacacagcg
     1381 caaggtaatc gtcgcgcgtg tcgatatcaa tagcagctcc cgcgaacgcc actgcaaccg
     1441 tgtcgtgcgg atgtttgcgg ataatttgtc gcgctccttc gtgaccactc aactcgcgca
     1501 actctgcgaa caactcacgc gcaaaaagcg cgggcacgcc acgcgcatcg ttgtattcac
     1561 tagccacaat tgtcctaccc gtttcacggc gacgttcgat taacgtgtcg atcagttcgg
     1621 tagtgacaaa cggctgatcg cacagcaaca ccacgacagc gtcaatatcg ccggctgcgg
     1681 cgagcactgc ctccagaccc acccgcagcg aagacgccat gcccgtttcc cattcgtgat
     1741 tacgcgtcac gatcagcggc aactcaagct cagcgccaac cgcaacagcg ttcgcaccga
     1801 gcaccacaac caccggccgg cacactgaac ccagcgccgt ctccgcagcg cggcgaatca
     1861 gagtttgtcc tttgtagacg agtaattgct tcggcgttgc accgacaccc aatcgggtcg
     1921 aagatcccgc cgcgaggatt aagatcccga tctgtggttg tgaactagac tggcccaact
     1981 ctcaagctcg tactttacgc caccgcgact tcacactgaa tcttcaacga ctcaaagctg
     2041 cgtatcgcag cacgcggcgc gggcgcgtga atcggccctc tgcgcaatcg caagagcccg
     2101 ccttcgcgcc cggccaccac agccttgatc tcagaaacta tcgagaacgc tacctcaatc
     2161 ggcgtgtcag cgccaatgtc gagaccggcc ggcgcgtaaa gttgcttcag aaaagcgatc
     2221 tcgtccgata tctccagcag catctgctcg gtgcgctgcc gcggacccaa acaaccgaga
     2281 taacgaagcg gcgtgttcaa gagcgtcctg agaacctcga gatcctgcag ataattgtgc
     2341 gtcatcagaa cgacggccgt tctgtcagtc aaccgcaccc gatcgcacac gtcttccgca
     2401 cggcacaaca ctacttcatc agcctcgtta aagcgttcca ccatcgccgg acgcgagcgt
     2461 gtgtcgacca cagtcgtgtg ccaaccaaga ttcttcgcaa tcgtcacgag cggcaacgcg
     2521 tcgtcacccg cgccgacgat cacgagcggc agcggcggct cgatcacttc gataaacacc
     2581 tcgacacttt catgttcgcc ttcataacga ctcacgcctg agccgccacc gcgaaccgca
     2641 gcgcgcaatt cgtcgacaac ctccggccca cagaacattc gataaaaccc tgcctcagat
     2701 ccagatttac catccggata tagtaacgcc cgcgcgccga tctctacttc cgtttcgcct
     2761 tcacaacgaa tcaccgtcgc caccgcacca cactgcgcac ttttctcact gtctgcaagc
     2821 aactgcacca gccccgcgca acgaaagtca gaagccggct cgatcaacac ctgtaccacg
     2881 ccgcggcaac cgagccccag tccccaaacg atgtcttcgt cggaagtcgt gtcgtacgtc
     2941 acgaccatcg gctcgcc
//
LOCUS       DASWTX010001175         3549 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_38555, whole genome shotgun sequence.
ACCESSION   DASWTX010001175 DASWTX010000000
VERSION     DASWTX010001175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3549
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38555"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1906)
                     /locus_tag="VGD38_17945"
     CDS             complement(<1..1906)
                     /locus_tag="VGD38_17945"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0729973.1"
                     /translation="MPNTFRAALAFLFLNLSFFTVASAQSHSLSSTPIRASAAEEESL
                     RTLTAEYGRALAAGDTEALRKFWNPQSPNLTSQLRSYKNVFLQARLELSSPQVTQLEI
                     TGDKAVSQLTLDERRLDRKTGAVLLTYDPFRGACRSFEWIRTSSGWRIEREFLVQDEL
                     AVRLEAARTEQQRDEILEQEKRFVNNTLISALGSKALRAQVRTEYDTGLRYAELQRIV
                     SEKLGYQIGVAAAWLNTAIIRNVADEHELGLVAAQKALALYESLGSKRGLSLTNETLS
                     NLHRALGDHRRAFECAQRSLRLAEEEGHRKGTMIALAELAIIYGQQNNAVQALAHLER
                     AHTLAQELGDNLMIATLRHDMALQYKRFGDHARALEIYQQLLKQTETFGDKGGAAMVR
                     DQIGRIFADQGRYEEALAYHREALNGLEAANKKRATVITLNNMSAVYLLQENFTEALS
                     TSQRALPLARETGRKVDVFVALTNLGYSLLGLNRLAEAQQSFTEAVSISESLRERAAG
                     GVEERQRYFEGGMRAHHGLLSVLVKQNDLQNALILAERAKGRTLLDMLQQGRVSVQKA
                     MTAKEQEQERQLKSQLTQLNKQLARLTQSDKQDTARIKAAETQLDKARLTYEAFQNAL
                     YAAHPELRTQR"
     gene            2187..2741
                     /locus_tag="VGD38_17950"
     CDS             2187..2741
                     /locus_tag="VGD38_17950"
                     /inference="COORDINATES: protein motif:HMM:NF023363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3455 domain-containing protein"
                     /protein_id="HEY0729974.1"
                     /translation="MYYPKIKSIIGLLVLFSVVGFAVTPTSAVAMFDNNNGPELPAGC
                     SSIAAPEGNKLAFHVYAQGAQVYRFNGATWDFVAPVATLYAEPSFHGEVGTHYVGPHW
                     ESKSGSKVKATRVLDTGCTPDPTAIAWLLLKKTETSGNGIFSKITYIQRTNTTGGLAP
                     TEPGSLNELREVPYTADYYFYRAE"
     gene            3061..>3549
                     /locus_tag="VGD38_17955"
     CDS             3061..>3549
                     /locus_tag="VGD38_17955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729975.1"
                     /translation="MDDGLVKYLEFDVRTDERGGTQGYFVFTDEAKVQLEEPNEDVDP
                     RRAESLAFSMRADLSEMAIEKNRAVIRGMVRESSHSRYLGKWIQLVVEDNDGIEVRDK
                     FVWSFCAQEEGGWIPSDAEVPGDRGAFMSWWATDAERKDDIGIPSANLIPGNLKGCRP
                     YPI"
BASE COUNT          742 a         1035 c          978 g          794 t
ORIGIN      
        1 cgcgctgcgt tcttagttcc ggatgcgcgg cgtacaacgc attctgaaac gcttcgtaag
       61 tgagtcttgc cttatcgagt tgggtctctg ctgctttgat acgcgcggta tcttgtttgt
      121 ctgattgcgt gaggcgcgcg agttgtttgt tgagctgcgt cagttgcgac ttcaactgcc
      181 gctcctgttc ctgctctttg gccgtcatcg ccttctgcac gctgactcgt ccctgttgca
      241 gcatgtcgag cagcgtgcgt ccctttgcgc gttcggcgag gatcagtgcg ttctgtagat
      301 cgttctgttt gaccagcacg ctgaggagtc cgtgatgcgc ccgcatgccg ccttcgaagt
      361 aacgttgacg ttcttcaacg ccaccggccg cgcgttcccg caggctttcg ctgatcgaca
      421 ctgcttcggt aaacgactgt tgcgcttccg cgagtcgatt taatccgagc agcgaataac
      481 cgagattcgt gagcgcgaca aagacgtcga ctttccttcc cgtctcgcgc gccaacggaa
      541 gcgcgcgctg cgacgtcgat aacgcttcgg tgaagttctc ctgaagcagg taaacggcgc
      601 tcatgttgtt gagcgtgatc accgtcgcgc gcttcttgtt cgcggcctcg agaccgttga
      661 gtgcctcgcg gtgataagcc agcgcttctt catagcggcc ctggtcggca aagatcctgc
      721 cgatctgatc gcgaaccatc gccgcgccgc ccttgtcgcc gaaggtttca gtctgcttca
      781 gaagctgctg gtagatttcc agtgcacgcg cgtgatcgcc gaaacgtttg tattgcaacg
      841 ccatgtcgtg tcgcagcgtc gcgatcatga ggttgtcgcc aagctcctgc gccagcgtgt
      901 gcgcgcgttc gagatgggcc aacgcctgca ccgcgttgtt ttgctggccg tagatgatcg
      961 cgagctcggc caacgcgatc attgtcccct tgcggtggcc ttcctcctcg gcgagacgca
     1021 gcgatctctg cgcgcactcg aacgcacgcc ggtgatcgcc gagcgcgcga tgaaggttgc
     1081 tgagcgtctc gttcgtgagc gagaggccgc gcttcgatcc gagcgattca tacagcgcga
     1141 gcgccttttg cgccgcaacc aaacccagct cgtgttcgtc cgccacgttt cggatgatcg
     1201 ccgtgttcag ccaggccgcg gccacaccga tctgataacc aagcttctcc gacacgattc
     1261 gctgcaactc ggcgtagcgc aacccggtgt cgtattccgt gcgaacttgc gcacgcaagg
     1321 ccttcgagcc taaggcactg atcagcgtgt tattaacgaa gcgcttctcc tgttcgagga
     1381 tctcgtcgcg ctgctgttcg gttcgcgccg cttcgagccg caccgcaagc tcgtcctgca
     1441 ccaggaactc gcgctcgatt cgccaccccg aacttgtcct gatccattcg aacgaccggc
     1501 acgcgccccg aaacggatcg taagtcagca gcaccgcgcc tgtttttcga tccaaccggc
     1561 gctcgtcgag cgttaactgc gaaactgctt tgtcgccagt gatttcgagc tgcgttactt
     1621 gcggactgct caactcgagc cgggcctgta ggaagacgtt tttgtaggaa cgtaactgcg
     1681 aagtgaggtt gggcgattgg ggattccaga acttgcgcaa cgcctccgtg tcgccggcgg
     1741 cgagtgcacg tccatactcc gccgtcaacg tgcgcaggct ttcttcttcc gcagccgaag
     1801 cgcgtatcgg agttgaactt aaggaatgag actgcgcaga cgcgacagtg aagaaactca
     1861 ggttcaggaa cagaaaagcc agcgctgcgc ggaacgtgtt cggcataaaa ccgtccctct
     1921 tcgcgaacag actcagttgt taacgcgcaa aaactgatcg aaaagggcca cccgaaaaaa
     1981 ctttaaaacg ctcggtaata tgcccaaaac ttcagcaact tccacagtcg atgtgcttaa
     2041 tctctgaacc agcgaggccg cgtttcataa gcaagcgggc aatcataacg aggcagattc
     2101 ttttcttttc atcacgcaga cgcctcgcaa tgtcagagtc gcacacaaac gcacaaattc
     2161 gacgtcctgg agctaaggag aaaaaaatgt actaccccaa gatcaagagc atcatcgggt
     2221 tgctggttct attcagcgtt gttggtttcg cagttacccc cacttcggcc gtggccatgt
     2281 tcgacaacaa caacggtccc gagttgcccg cgggctgcag cagcatcgcg gcgcctgagg
     2341 gaaacaaact cgcgtttcat gtgtacgcgc agggtgctca ggtttacaga ttcaatggcg
     2401 ctacgtggga tttcgtcgca ccggttgcga cactgtacgc cgagccgagt tttcacggtg
     2461 aagtcggcac gcactacgtt ggaccgcact gggaaagcaa gagcggcagc aaggtgaaag
     2521 ccactcgcgt gctggacacc ggttgcactc ccgatccgac cgcgattgcg tggttgctgc
     2581 tcaagaaaac cgagaccagc ggcaacggta tcttcagtaa aatcacgtac attcaacgga
     2641 ccaacacgac cggcggcctg gccccaacag aacccggttc gctgaacgaa ctgcgcgaag
     2701 tcccctacac cgcggattat tatttctacc gcgcagagta agtaaccagc atttcggagc
     2761 cttaaaaacg aagcgtcgcc gggacaaacg gcggcgcttt ttttctggct ggggtgaact
     2821 tattcgccgc aacttacgcg ttatgcattg gcaatgactt tagtgtgtgg tataaaccgt
     2881 gccccgatta cgtcccgtcc cccaagggat tcacaattca ccattacttc aaaggagtta
     2941 accctcatgg ttagaaaggt tttcccctcg cttttcatat tgtgtctggt gttactcgct
     3001 acctcgctta cggcttcggc tcaaacgccc ggaaccgcaa gcggcaaata caaattcgtc
     3061 atggacgacg gcctagtcaa atacctcgaa tttgatgtac gcactgatga acgtggcggt
     3121 actcaaggct actttgtgtt taccgatgaa gctaaagttc agcttgaaga accaaacgaa
     3181 gacgtagacc cgcgcagagc cgaatctctc gcgttctcca tgagagccga tctcagcgag
     3241 atggcgatcg agaagaatcg agccgtaatc cgtggcatgg tccgcgagtc gagccacagt
     3301 cgttatctcg gtaaatggat acagctcgta gtcgaagaca acgacggtat cgaagtacgc
     3361 gacaagttcg tctggtcctt ctgtgcgcag gaggagggcg ggtggattcc ttccgacgcg
     3421 gaagttcccg gcgatcgcgg tgcgttcatg agctggtggg ccaccgacgc ggaacgtaaa
     3481 gacgacatcg gcataccttc ggccaatctc atccccggta atttgaaggg ctgcagacct
     3541 tatccaatc
//
LOCUS       DASWTX010001176         2218 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_253347, whole genome shotgun sequence.
ACCESSION   DASWTX010001176 DASWTX010000000
VERSION     DASWTX010001176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2218
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253347"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..446
                     /gene="rimP"
                     /locus_tag="VGD38_17960"
     CDS             <1..446
                     /gene="rimP"
                     /locus_tag="VGD38_17960"
                     /inference="COORDINATES: protein motif:HMM:NF014617.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000028 - ribosomal small subunit assembly
                     [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0042274 - ribosomal small subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEY0729976.1"
                     /translation="VAIDHGLELVHAEVAGPENKPIVRVFIDKPQGVTHEDCSEVSTH
                     LGTILDVEDFIHASYTLEVSSPGLERGLYKRADYERFAGSNAKMKTRQPINGQRNFRG
                     RLLGLEGDEVLFEDRTNGRVRVPLDLIKQANLEVDVEEELRRASK"
     gene            535..>2218
                     /gene="nusA"
                     /locus_tag="VGD38_17965"
     CDS             535..>2218
                     /gene="nusA"
                     /locus_tag="VGD38_17965"
                     /inference="COORDINATES: protein motif:HMM:TIGR01953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HEY0729977.1"
                     /translation="MSSSIAQNIEALCQEQGIERDLVIEAMKEAVRAAAKKQFRSGED
                     IQVDWNSETGIELSASKVVVDEVENPATELSIEEARELAGDEVELGDALLLPLPMEEL
                     GRIAAQTAKQILFQKVRDAVRSNVYEQYIDKIGDLVNGYVKRFERGNIIVDLGNLEAI
                     LPRSQQSRGEQWNQGERIRVVINNVSKESKGPQVEVSRTSPELLLRLFEMEVPEIYDG
                     TVVIKSAVREPGERAKIAVMSNERDVDPVGACVGMKGSRVQAIIRELRGEKIDIIEWS
                     DEPSVFAANALSPAKVNQVRITDIENRQMEVIVNEDQLSLAIGKRGQNVRLATKLVGW
                     NIDIRSEEEIKREVTEQMGALIASGEAVPLSAIEGVTAQQAEALAEHGINDIDALANT
                     TVDDLVEFLDLSLDEAEVILSAAQAVIAMRNRNLGEGEAGEEQHAVSAELDESIEAEE
                     VEPNSEMTAEGYDEAVQNGVPFRAEEDILARESADPVAVTESEEIAADEIALMEPGRD
                     LRPDTITPSPDITSSGVAALEQVEEVAAEILAADEEGVSDAEATADETEPTAP"
BASE COUNT          555 a          620 c          651 g          392 t
ORIGIN      
        1 aggtggcaat cgaccacggc ctcgaactcg tacatgcgga agtcgccggc cccgagaaca
       61 agcctattgt ccgtgtattt attgataagc cgcagggtgt aacccacgag gactgttccg
      121 aagtcagcac acatttggga accattctgg atgtggaaga cttcatccac gcttcctaca
      181 cattggaagt atcgtcgccc gggctggagc gtgggcttta taaacgtgcc gattacgaac
      241 gcttcgccgg tagtaacgcg aagatgaaga cccggcagcc catcaacggc caacgcaatt
      301 tccgcggccg cttgctgggc ctcgaaggcg atgaagtgct ttttgaagac cgtaccaacg
      361 gccgcgtgcg cgtgccgctg gatttgataa aacaagcgaa ccttgaagtg gacgtcgaag
      421 aagaacttcg gcgcgccagc aaatagacat ttaacggcta cgtagacaac tgaataggct
      481 caacgacgcg gttccgaaca ccagcgccga gccaaaacga atagagagac tttcatgagt
      541 tcatcgattg cacaaaacat tgaggcgctt tgtcaggaac aagggatcga acgcgacctc
      601 gtgatcgaag caatgaaaga ggccgtgcga gcggctgcca aaaaacagtt tcgttccggt
      661 gaggatattc aagtggactg gaactccgag acgggcatcg aactttccgc ttccaaagtc
      721 gtagtcgacg aagtggaaaa cccggccacc gaactctcta tcgaagaagc ccgcgaactt
      781 gccggcgacg aagtcgaact cggcgacgcg ctgctgctgc cgctgccgat ggaagaactc
      841 ggccgcatcg ccgcgcagac agcgaaacag atcctgtttc aaaaggtccg cgacgccgtt
      901 cgcagcaacg tctacgagca gtacatcgac aagatcggcg accttgtaaa cggctacgtg
      961 aaacgtttcg aacgcggcaa cattattgtt gatctcggta atctcgaggc gatcctgccg
     1021 cggtcgcagc aatcacgcgg cgaacagtgg aaccagggcg aacgaattcg cgtcgtcatc
     1081 aacaacgttt cgaaagagtc gaaaggacct caagtcgagg tttccagaac gtcgccggaa
     1141 ctgctgttgc ggttatttga aatggaagtg ccggaaatct acgacggcac ggtcgtgatc
     1201 aagtcggccg tacgcgaacc cggcgagcgc gccaagatcg ccgtgatgtc caacgaacgc
     1261 gacgtcgatc cggtcggcgc ctgcgtcggt atgaaaggct cgcgcgttca ggcgatcatt
     1321 cgcgaactgc gcggcgagaa gatcgacatc atcgaatggt ctgacgagcc gtcagtcttt
     1381 gccgccaacg ctttgtcgcc ggcgaaagtc aaccaggtca gaattacgga cattgaaaac
     1441 cgccagatgg aagtcatcgt caacgaagac caactctcgc tggcgatcgg caaacgcggt
     1501 cagaacgttc gtctcgcgac caagctcgtc ggttggaaca tcgacatccg cagcgaagag
     1561 gaaatcaagc gcgaagtcac cgaacagatg ggcgcactca tcgcttccgg cgaggctgtg
     1621 ccgctgtcgg caattgaagg cgtcaccgcg caacaggccg aagcgctggc cgagcacggc
     1681 attaacgaca tcgacgcact ggccaacacg accgtcgacg atctggtcga attcctcgac
     1741 ctgagtctcg acgaagccga ggtcattctc agcgccgcac aggccgtgat cgcgatgcgt
     1801 aatcgcaatc tcggcgaagg cgaagcaggc gaagagcaac acgctgtttc cgctgagctc
     1861 gatgaatcaa tcgaggctga agaggttgag ccaaactcgg aaatgactgc cgaaggttac
     1921 gacgaagctg tccagaacgg cgttccgttc agggccgagg aagacatcct cgcgcgcgag
     1981 tccgccgatc cggtggccgt caccgagtct gaagaaatcg cggctgacga gattgccttg
     2041 atggagccgg gtcgtgattt gcggcccgac acgattacgc cgtcgccgga cataacgtct
     2101 tcgggtgtgg ccgcactcga gcaagttgaa gaagtagccg ccgagatact ggcggctgat
     2161 gaagaaggtg tttcagacgc cgaggccacg gccgatgaaa cagaacccac ggctcccg
//
LOCUS       DASWTX010001177         2955 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_107909, whole genome shotgun sequence.
ACCESSION   DASWTX010001177 DASWTX010000000
VERSION     DASWTX010001177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2955
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107909"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2633)
                     /locus_tag="VGD38_17970"
     CDS             complement(<1..2633)
                     /locus_tag="VGD38_17970"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEY0729978.1"
                     /translation="MKLQFDPHQSYQLDAIRAVVDLFAGQPDASQNDFTIAEGGISSL
                     LLTHTGIANNLVLAREQLLSNCKTVQVRNGLAPSDTLETMQMIDGSSVADFANFTVEM
                     ETGTGKTYVYLRTIHELHQTYGFKKYVIVVPSLAIREGVRKSLEITKEHFQTLYNFER
                     MEFFVYESTKVNQLRNFALSNAIQILVMNIDAFAKDIAERGGKKAKGNVINQRLETGV
                     RPIEFIQASRPIVILDEPQNLETDIRRQAIARLNPLCVLRYSATHRNTYNLVYKLDPV
                     RAYDLGLVKQIGVDSVVELRDANRAYIDVQGFKAGKRSISAKVRIWRNGASGADKKDV
                     TVKNGDDLYALSNQREIYKHGFIVNEMDAEEGYVRFANDVTVRIGQPHGEMTDAILKL
                     QIEATVRRHFEKEKKLRDLGIKVLSVFFIDRVSNYREYHADGAVGKGKFAEWFEEIYE
                     AYRRKPEFENLFSYSAFEVHNGYFSQDKKTITPFESASYETKADAEASTFALIMRDKE
                     RLLDPAEPLRFIFSHSALREGWDNPNVFQICTLAESRSEIRKRQEIGRGMRLCVNKDG
                     ERITDRALNRLTIIANESYEDFANQLQSEMEEAGVAFKREMVKNERDKVVIRLRKGYE
                     SDPSFLELWRRIQQRTSYRVRYETKELIAKAAKRIRERMPAIERPKIVIMRADISVTG
                     EGIAGTQTGFRTESIDAEYVMPDFVGQIQAKTGLSKSTVAQILLESGRLSDATNNPQA
                     FIDAAAHAINAIKREVIVDGVEYKTVDGLVYEMRQFDGDDLMEVFESNLRPVNNKEKT
                     LFSHIVIDSNSGPERRFAEACDQNDDVLFYIKLPKWFQIETPVGFYNPDWALAYKNSR
                     TLYFVAETKDTGSKVGVDLDV"
     gene            complement(2634..>2955)
                     /locus_tag="VGD38_17975"
     CDS             complement(2634..>2955)
                     /locus_tag="VGD38_17975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729979.1"
                     /translation="HISHFVNSEKEGADTESILFELLLKFGQELTTPYETIQISGTRV
                     FWIPDLNMFFVFEAFTEDMIAPLLSRQPREIVVLDSVFQGSDELKSNLDLHCRDAAVK
                     LTCI"
BASE COUNT          656 a          808 c          720 g          771 t
ORIGIN      
        1 aacacgtcaa ggtccactcc aaccttactg cccgtatcct tggtctcagc tacaaaataa
       61 agcgtcctgc tatttttata cgcaagggcc cagtccgggt tatagaaacc taccggcgtc
      121 tcgatctgaa accatttcgg cagttttata tagaacagaa cgtcgtcatt ctgatcgcaa
      181 gcttcggcaa aacgtcgttc gggaccggaa ttggaatcga taacgatgtg tgagaaaaga
      241 gtcttctctt tattgttcac gggtcgcaga ttcgactcga agacttccat cagatcgtct
      301 ccgtcaaact gccgcatctc gtaaaccaga ccgtcaaccg tcttgtactc aaccccatcc
      361 acgatcacct ctcgcttaat cgcgttgatg gcgtgtgccg cggcgtcgat gaacgcctgc
      421 ggattgtttg tggcgtccga caggcgtccc gactctaaca ggatttgggc cacagttgat
      481 ttggatagcc ccgtcttcgc ctggatctgg cccacgaaat ccggcatcac atattcagca
      541 tcaatgctct cggtgcgaaa accagtttgc gtaccggcga tcccctcacc cgtaaccgaa
      601 atatcggcac gcatgatcac gatcttgggc cgttcgatag ccggcattct ttctctgata
      661 cgtttcgctg ctttagcgat gagctccttg gtctcataac gaacccggta actggtgcgc
      721 tgctgaatac gtcgccacag ctccaggaac gagggatctg actcataccc tttccgcaac
      781 cggatcacga ccttgtcgcg ctcgttcttc accatctctc gtttgaaagc gactcccgcc
      841 tcttccatct cgctctgcag ttggtttgca aaatcttcat acgactcatt cgcgatgatg
      901 gttaatcgat tcaacgcgcg atcggttatg cgttcgccat ctttattgac gcaaagtcgc
      961 atgcctcttc cgatctcctg gcgcttacga atctccgatc ggctttcggc gagcgtacaa
     1021 atctggaata cgttcggatt gtcccaaccc tcgcgcaatg ccgagtgact aaagatgaag
     1081 cgcagcggct ctgccggatc caaaagacgt tccttgtctc gcatgatcaa agcaaacgta
     1141 ctcgcctccg cgtctgcttt ggtttcgtac gaggctgatt cgaatggagt gatcgttttc
     1201 ttgtcctgcg agaagtagcc gttgtggact tcaaacgcac tgtaactaaa cagattttca
     1261 aactccggct ttcgccgata agcctcgtaa atctcctcga accactcggc aaactttcct
     1321 ttaccgactg cgccatcggc gtggtattcg cggtagttgc tgacgcgatc gatgaagaag
     1381 actgaaagga ccttgatgcc caggtcgcgc aatttctttt ccttttcgaa atggcggcga
     1441 acggtggctt caatctgaag tttcaaaatc gcgtctgtca tttcgccgtg cggctgaccg
     1501 atgcggactg tcacatcatt cgcaaaacgc acgtagcctt cctcggcgtc catctcattc
     1561 acgatgaacc cgtgtttgta aatctcgcgt tgatttgaaa gcgcgtaaag gtcgtcgccg
     1621 tttttcacgg tcacgtcctt tttatctgca cccgatgcgc cgttgcgcca gattcgaacc
     1681 ttggcagaaa tcgaacgctt gccggctttg aagccttgca cgtctatgta agcgcgattc
     1741 gcatcacgaa gttcgacgac cgaatcgact ccgatctgtt tcactaatcc cagatcgtaa
     1801 gctctcactg gatcgagctt gtagaccagg ttgtaagtat tgcgatgagt agcggaatag
     1861 cgcagcacgc aaagcgggtt cagcctcgcg attgcctggc gtcgaatatc cgtttccagg
     1921 ttttgaggtt catccagaat cacgatcggc cgtgacgctt gaatgaattc aatcggccgc
     1981 acaccggttt cgagtctctg gttaatgaca ttgcctttcg ctttctttcc acctcgttca
     2041 gcaatgtctt tcgcaaacgc gtcgatattc atcacgagga tctggatcgc attcgacagt
     2101 gcgaagtttc taagctgatt cacctttgtg gactcgtaaa cgaagaactc catacgttca
     2161 aagttgtaga gagtctggaa gtgttccttc gtgatctcga gtgattttcg cacgccttcg
     2221 cgaatcgcga gcgagggaac aactatcacg tacttcttga atccgtaggt ctgatgcagc
     2281 tcgtggatcg ttctgaggta tacgtaagtc ttgccggtgc ccgtctccat ttcgacagta
     2341 aagtttgcaa agtcggcgac gctggaccca tcgatcatct gcatcgtctc gagcgtgtcg
     2401 gacggcgcca gtccatttct cacctgcact gtcttgcagt tgctgagcag ttgttcgcgt
     2461 gcgagcacga gattgttcgc gatgccggtg tgcgttagta acagactcga aatcccgcct
     2521 tcggcaatcg tgaagtcgtt ctgcgaagcg tcgggctgtc cggcaaagag atcgaccacg
     2581 gctcttatgg cgtcgagctg atagctttga tgcgggtcaa actgtagttt catttagatg
     2641 caggtgagct tcacagcggc atcgcgacag tgtaagtcga gattactctt cagctcatca
     2701 gagccttgaa acactgaatc aagcacgacg atctccctcg gctgccgcga caaaagcgga
     2761 gcgatcatgt cttcggtaaa agcctcgaag acgaaaaaca tgttcagatc gggaatccaa
     2821 aagacgcgcg tgcccgatat ttggatggtc tcgtaaggtg tcgtgagctc ctgaccaaac
     2881 ttgagcaaca attcgaacag aatgctctcg gtatcggcgc cttccttctc actgtttacg
     2941 aaatggctga tgtga
//
LOCUS       DASWTX010001178         2082 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_107955, whole genome shotgun sequence.
ACCESSION   DASWTX010001178 DASWTX010000000
VERSION     DASWTX010001178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2082
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107955"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(90..1424)
                     /locus_tag="VGD38_17980"
     CDS             complement(90..1424)
                     /locus_tag="VGD38_17980"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HEY0729980.1"
                     /translation="MSKVVAVIGAQWGDEGKGKIVDLLAEQFEIVTRYQGGHNAGHSV
                     QVGDQSFVLHLLPSGIVHRGKTCVLGNGMVIDPKAFFVEADRLTQQGIEVSPERVKIS
                     SRAHLILPYHRALDHTSEERLGNEKVGTTLRGIGPAYEDKAGRRGIRTADALVPTVLR
                     SRIERNLEDANRIIEAYGGEPLDADEIFNEMSVLTERLAPFIADTTHYLNIAASEGRS
                     ILLEGAQATLLDVDHGTYPFVTSSTTVAGGAIIGTGLAPNRLSGVLGIVRTYTTRVGE
                     GPFPTEMLEGEAELGQLIRERGREYGASTGRPRRCGWFDAFATRYAAEINGFTSVALT
                     KLDVLDTLDEIKVCTGYKLDGRVCESLPAVSQDLRRVEPVYATLPGWQSSTLGMTEMN
                     SLPPNARAYVEFLSSQIGVEIGLISTGPERSQTIIVRDSALGGWLNEVSDPQ"
     gene            1418..1834
                     /locus_tag="VGD38_17985"
     CDS             1418..1834
                     /locus_tag="VGD38_17985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729981.1"
                     /translation="MTWILRGLARLLESDWLFDKVITTGAADFKDVARFDGKETTRVG
                     AIFVNAAEGGAVGVLFQKGAFEDEFAARAATIALAAAKCERRDGFFFAKVCNDKAAQF
                     ALGLTCAKFGVGDLARMNPPGGQTHFKRERFASRFH"
BASE COUNT          409 a          558 c          659 g          456 t
ORIGIN      
        1 aattcaagat agttcacgct gaaatcaaga tagtccaggc gaaattcaag acataaaaac
       61 tcagatcgtg aagtgggtgg cgtgtgtggc tattgcggat cgctgacttc gttgagccaa
      121 ccgccgagtg ctgagtcgcg cacgatgatg gtttgagagc gttcggggcc ggtcgagatc
      181 aggccgatct cgacgccgat ctgggaggaa agaaattcga cgtaggcacg cgcgtttgga
      241 ggaagggaat tcatttccgt cattcccaac gttgagctct gccagccggg taacgtcgcg
      301 tagacaggtt cgacgcgacg caaatcctgc gagaccgccg gcagcgattc gcacacgcgt
      361 ccgtcgagtt tgtagccggt gcagactttg atttcgtcta gcgtgtcgag cacgtcgagc
      421 ttcgtcaacg caacggacgt gaagccgttg atttccgcgg cgtagcgcgt tgcaaacgcg
      481 tcgaaccaac cgcagcggcg cggacgtccg gttgatgcgc cgtattcacg gccgcgttcg
      541 cgaatcagct ggcccaactc cgcttcgcct tcgagcattt cggtcgggaa tggaccttcg
      601 ccgacgcgcg tcgtgtacgt gcgaacaatg cccaacacgc cgctcagccg gttcggcgcg
      661 agaccggtgc cgatgatggc gccgccggcg accgtcgtcg acgaagttac aaatggataa
      721 gtgccgtgat cgacgtcgag cagcgtcgct tgcgcgcctt cgagaaggat cgagcggcct
      781 tcgctcgcgg cgatgttcag gtagtgagtc gtgtcggcga tgaacggcgc gaggcgttcg
      841 gtcaacacgg acatttcgtt gaagatctca tcggcgtcga gaggttcgcc gccgtacgct
      901 tcgatgatgc gattggcgtc ttcgaggttt cgttcgatgc gtgaacggag cacggttggg
      961 acgagtgcat cagcggtgcg aatgccgcgg cggcctgctt tgtcttcgta ggccggaccg
     1021 atgccgcgca gcgtggtccc gactttttcg ttaccgagac gctcttcgct cgtgtggtcc
     1081 aacgcgcgat ggtacggaag aatcaagtgc gcgcgcgagc tgatcttcac gcgctcgggg
     1141 gacacttcga tgccttgctg cgtgaggcga tcggcttcga cgaagaatgc cttcggatcg
     1201 atgaccatgc cgttgccgag tacgcacgtc ttgccgcggt gcacgatgcc tgacggcagc
     1261 aagtgcaaca cgaatgactg atcgccgacc tggaccgagt ggcccgcgtt gtgaccgccc
     1321 tggtagcgcg taacgatctc gaactgctcg gcgagcaggt cgacgatctt gcctttgcct
     1381 tcatcgcccc attgggcgcc gataactgcg acaacttttg acatggatct tacggggatt
     1441 agctcgcctt ctcgagtctg actggctttt cgataaagta ataactacag gcgccgcgga
     1501 cttcaaggac gtcgcgcggt tcgatgggaa agagacgaca agagttgggg cgattttcgt
     1561 aaatgccgca gagggaggtg ccgtcggcgt tctttttcag aaaggggcat ttgaagacga
     1621 gttcgcagca cgcgccgcaa cgattgcact cgccgcggcg aagtgcgagc gccgcgatgg
     1681 tttcttcttt gcgaaagttt gtaatgacaa agcggcgcag tttgccttgg gcctgacgtg
     1741 cgcgaagttt ggcgtcggcg accttgcgcg aatgaatccg ccgggcggcc agacgcattt
     1801 caagagggag agatttgcga gccgttttca ttaatgggtc gagttagcca acgctttcag
     1861 cgttaagaac tcctttgtta tgacgttccc agggttgaaa caaccctggg ctggaattgg
     1921 cgaacgcctt cggcgttaac gagtcaaagc tttgccatgt cctggtacag ctcaaggtat
     1981 cgtttggccg cggccgtcca ggaattgtcc acgagcattc cgttgcgttg gatcttttgc
     2041 caatcgtcag gccgcgtgta aaagtaaagg gcttcgcgta tt
//
LOCUS       DASWTX010001179         2708 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_276841, whole genome shotgun sequence.
ACCESSION   DASWTX010001179 DASWTX010000000
VERSION     DASWTX010001179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2708
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_276841"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1855)
                     /locus_tag="VGD38_17990"
     CDS             complement(<1..1855)
                     /locus_tag="VGD38_17990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729982.1"
                     /translation="MTKRIFVGTLAMALVVAALCAPTAVQSVARPALIDTPGNLRVTA
                     TSNTGITLNWDPVADVAAYQIERSDTMSGPFITIAKDLTTTTFTDSSVVSPNAYVYRA
                     RALGIIFQTGELVHSTPSNMAVGTAISFQFGLLSDLQGKTIAAQHFYDVRTAINSVRK
                     VAHLPAVQWSPDNLNGQKVFGAHVQDLRSKLNEALAVLQIPVLSYQDPTLNTTIPIRA
                     IHLEQLQTRSSRGSSTSAGPLYHNASRAQIGEFGPVTTLPLVAVHLSVLPDRRVLFWG
                     RDFVRDANGNIVLTPPPRLEAKQVTGQSQAYVWNMQSGEVKRVDNPTANLFCSGHSFL
                     PDGRLFVSGGHVHPDFDALGEKQTNIFDYRDDSWTRGTDMEKGRWYPYHVTLGTGEPL
                     IMAGSYWSNEATPTQRPVALVNRDTQIYTPALETTLPFKKIDPPPNNGSLTVYPFIHL
                     LSDGSVFQAQSGFKRVGTEDVPDQLSRWLDPATNTWGSLPSTLDPHAIGSSVFLGNNK
                     LALLGGFATDNQPTNGVEVVTAYPHGSAAWQRMTPMKFPRTYHTATMLPNGKVLVTGG
                     VSCPGGNNIQSFDIDDTIKCSSGQVMSAELWDPATDTWTTMAAQQEIRAYHS"
     gene            complement(1911..>2708)
                     /locus_tag="VGD38_17995"
     CDS             complement(1911..>2708)
                     /locus_tag="VGD38_17995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729983.1"
                     /translation="AVGGILRVGQLAKNAATFTHGATAFHTNGLERLRINSAGNVGIG
                     TTTPNHRLDVQGGSINASGGLCINGDCRTAWPSGGSSQWTTSGLNIFYNDGNVGVGTG
                     SPTSKLHVAGDARVTGNMTVDGNIAAKYQDLAEWVPAATQLSVGTVVVLDTTASNQVT
                     SSNSSYDTRVAGVISEQPGIVLGEKSDNKVLVATTGRVRVKVDATNAPIQIGDLLVTS
                     TREGFAMKSLPVEIGGARIHRPGTLIGKALEPLASGTGEILVLLSLQ"
BASE COUNT          531 a          760 c          804 g          613 t
ORIGIN      
        1 ccgaatgata tgcacgaatc tcttgctgcg cggccatcgt ggtccaggta tcggtcgcgg
       61 gatcccaaag ttccgcgctc atgacctgac cgctcgaaca tttgatggtg tcgtcgatat
      121 caaaactctg gatgttgtta ccaccaggac aactgacacc accggtcacc aatactttgc
      181 cgttgggcag cattgttgcc gtgtgataag tcctcgggaa cttcatcggc gtcatccttt
      241 gccacgcggc agagccgtgc ggataggctg ttacgacttc gacgccgttg gttggctggt
      301 tatccgtggc gaatccaccg agcagggcta atttgttgtt tcctaaaaac accgaagagc
      361 cgattgcatg cggatcgaga gtgctcggaa gcgagcccca cgtgttcgtc gccggatcca
      421 accacctgct tagctgatcc ggcacgtctt cagtccccac gcgtttgaaa ccggattgcg
      481 cctggaaaac ggagccgtcg gaaagaagat gaatgaacgg atagaccgtg agggagccgt
      541 tgttaggcgg cgggtcaatt tttttgaacg gcaaggttgt ttccagcgcc ggcgtgtaaa
      601 tctgcgtgtc gcggttaacc agggcgaccg ggcgctgagt cggtgtggct tcgttggacc
      661 agtagctacc ggccatgatc aacggttcac cggtgccgag cgttacgtgg taggggtacc
      721 agcggccctt ctccatgtca gtgcctctgg tccaactgtc gtcgcggtag tcaaaaatat
      781 tggtctgctt ctcgccgaga gcgtcaaaat caggatgtac gtgcccgccg gacacaaaca
      841 aacgcccgtc cggcaagaac gaatgcccgg aacagaagag atttgcggtt gggttgtcca
      901 cgcgcttcac ctcgccggac tgcatgttcc acacgtaggc ctggctttgc ccggtgactt
      961 gctttgcctc cagccgtggc ggcggcgtca gcacgatgtt tccgtttgcg tccctgacaa
     1021 agtcccgtcc ccaaaacagg actcggcgat ccggtaatac actcaaatgg acagctacca
     1081 gcggcaatgt ggtaaccgga ccaaactcac ctatctgcgc tctgcttgcg ttgtgatata
     1141 gcggaccggc actcgtgcta ctgccgcggc tcgatcttgt ttgcaactgt tcgagatgaa
     1201 tcgcccggat gggtatggtc gtattcagag tcggatcctg gtaactcaac acaggtatct
     1261 ggagcacggc cagagcctcg ttcaatttag aacgcagatc ctgtacgtgc gcgccgaaaa
     1321 ctttttggcc gttcaaattg tcgggcgacc actgaaccgc cggtaaatgc gcaaccttcc
     1381 gcacggagtt gatggccgtg cgcacgtcgt agaagtgttg ggccgcgatc gtttttccct
     1441 gcaaatcgct caacaggccg aactggaacg aaatagctgt gcccacagcc atgttgctcg
     1501 gcgtggaatg gaccagttcg ccggtttgaa agatgattcc gagggcccgc gcgcgataca
     1561 cgtaagcatt cggactgacg acgcttgaat ctgtgaacgt agtggttgtc aggtctttgg
     1621 ctatggtgat gaaaggtcct gacatcgtgt cgctgcgttc gatctgatac gcagccacat
     1681 ccgcgaccgg gtcccagttc agcgtgatgc cggtgttgga agttgccgta accctgagat
     1741 tcccgggagt atcgataagc gcgggtctgg cgacgctctg caccgcggta ggtgcgcaca
     1801 acgctgcgac cacgagcgcc atcgccagcg tcccaacaaa gatacgtttc gtcatgattg
     1861 cctccagaaa gcaaaagcca gttggtcgtt tgtgtttctt gtttggctag ctactgcagg
     1921 ctcagcagca cgaggatctc tccagtgcca ctggcgagtg gctcgagtgc tttaccgatc
     1981 agcgttccgg gccgatggat gcgagcgccg ccgatctcga ccggcaaaga cttcatcgca
     2041 aagccttcgc gcgtgctcgt gactaacaag tcgccgatct gtatcggagc gttggtcgcg
     2101 tcgactttca cgcgaacgcg tccggtggtg gctacgagca ctttgttgtc actcttttcg
     2161 ccgagcacga ttcccggttg ttcggagatc acgcccgcga cgcgcgtgtc gtaactgctg
     2221 tttgaagaag tgacctggtt tgacgcggtg gtgtcgagga cgactacggt tccgacggag
     2281 agctgtgtcg ctgcgggaac ccactcggcc aggtcctgat acttggcggc gatgttgccg
     2341 tcgacagtca tgtttccagt gactctggca tcgcccgcca cgtgaagttt cgacgtcggc
     2401 gaaccggttc cgacaccgac gttgccgtcg ttgtaaaaga tattcaaacc cgaggtggtc
     2461 cattgcgagc tgccgcctga cggccacgct gtgcggcaat caccgtttat gcacagcccg
     2521 ccggaagcat tgatcgaacc gccctgcacg tcgagtcgat gattgggagt tgtggtgccg
     2581 attccgacgt tgcctgctga gttgatccgc aggcgctcga ggccgtttgt gtgaaacgca
     2641 gtggcgccgt gtgtgaaagt cgctgcgttc ttggcgagtt ggcccactcg gagaatgccg
     2701 cctaccgc
//
LOCUS       DASWTX010001180         3272 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_107981, whole genome shotgun sequence.
ACCESSION   DASWTX010001180 DASWTX010000000
VERSION     DASWTX010001180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3272)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3272)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3272
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107981"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..901
                     /locus_tag="VGD38_18000"
     CDS             <1..901
                     /locus_tag="VGD38_18000"
                     /inference="COORDINATES: protein motif:HMM:NF023431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3500 domain-containing protein"
                     /protein_id="HEY0729984.1"
                     /translation="TKVSFPFDSDQKSKWSNFPPGIFPRNGLRLGDLNARQREAVFAL
                     LATALSQRGLQKVKEIIEGDEVLKNSEEGSAGAPRRGFDPQFGRDHYYLALLGTPSLT
                     DPWMIQFGGHHLAINVTTVGKANVLTPSLPAAQPAVYKLNSETVRPLGRENDKGFALI
                     NSLDAEQQKQAILSYQVNDLVLGAGQDGKMVQTEGIKVSLFNDAQKEKLLDLVNEWVG
                     ILNDEAAGVKLAEVKANLTETWFAWSGPTTNGSPAYFRIQGPTLWIEYSPQRMRGSGL
                     DINHIHTIYRDPTNDYAARLVKK"
     gene            973..1503
                     /locus_tag="VGD38_18005"
     CDS             973..1503
                     /locus_tag="VGD38_18005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729985.1"
                     /translation="MQAAQLNLTPTGVRIELRLTPGVDVADRIFTLIDLDRNGQASPT
                     EQRAYAQRVLDDLSLELDNRPLPLTLTDVAFPSRAELQTGDAPIILAVSADTNFTTSN
                     DHQLTFRNNHLPTLSVYNANALIPTTHIKITSQQRDPLQRTLILHFHLPSTTTMAPST
                     PWPIWRLFLWLSELLI"
     gene            1598..2080
                     /locus_tag="VGD38_18010"
     CDS             1598..2080
                     /locus_tag="VGD38_18010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729986.1"
                     /translation="MKFCSRCGLALSGLAEWLAGGRVVPAKRPEDSEALSPRRKGIRR
                     AAKLMFFSGVLFPIFLVISLAFDEGGPMVIPFIVFFIALVMMLYARLFSDNTVPITNQ
                     TSLPNQAAQTSALGSPARGSLPAAGDMPMPPIGRQVRTNELAQPPSVTENTTRLLDNE
                     "
     gene            complement(2111..2659)
                     /locus_tag="VGD38_18015"
     CDS             complement(2111..2659)
                     /locus_tag="VGD38_18015"
                     /inference="COORDINATES: protein motif:HMM:NF022018.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ORF6N domain-containing protein"
                     /protein_id="HEY0729987.1"
                     /translation="MPHKKVLKTTDLSLSVQLIERRIYLIRRQKVMLDFDLAELYGVS
                     TKQLNQQLSRNRRRFPDDFMFQLTTEETEALRSQFVTSNIGRGGRRYLPHAFTEQGVA
                     MLSGVLRSEQAVDVNIAIMRAFVRLRQMLESNEELNRKYVSVVRKLATHDNYFTVVFD
                     ELKKLTEKPVPTRRQIGFKRRS"
     gene            complement(2722..>3272)
                     /locus_tag="VGD38_18020"
     CDS             complement(2722..>3272)
                     /locus_tag="VGD38_18020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729988.1"
                     /translation="WVVLALNCPSAGIALTSRAASLHRLKNRTTFPQAADFDSRVTLD
                     ALLQPGDDTARWSTDRAARVQGLVVDVAYARPEATNCFNPCGRDIHINIAKHKDAGQT
                     EQVVLEVTPPLRAWAAAQGIDWSEETLHAQLVGHWVEFEGWLYFDVGHTSESENISPG
                     HPENWRATAWEVHPITKITVVR"
BASE COUNT          721 a         1017 c          834 g          700 t
ORIGIN      
        1 tacgaaagtg agttttcctt tcgatagcga tcagaaaagt aagtggtcca actttccgcc
       61 gggcatcttc ccgcgcaacg gcttgcgcct cggcgatctg aacgcccggc aacgtgaggc
      121 tgtgtttgcg ttgctggcca cggctttgag tcaacgcggt ctgcaaaaag tgaaagagat
      181 catagaaggc gacgaggtat tgaagaactc tgaagaagga agtgctggtg ctcctcgtcg
      241 tggtttcgat ccgcagtttg gccgcgacca ctactacctc gctttgctcg gcacgccttc
      301 gctcaccgat ccgtggatga ttcagttcgg cggccatcac ctcgcgatca acgtcacgac
      361 cgtcggcaaa gcgaacgtct tgacgccgag tctgcccgcg gcccagccgg cggtctacaa
      421 actgaacagc gaaacagtgc gcccgcttgg tcgagagaac gataagggct tcgcgctcat
      481 caactcgctc gacgctgaac aacaaaagca ggcgatcctg tcgtaccagg tgaacgatct
      541 cgtgctcggc gccggacagg acggcaagat ggtccaaacc gagggcatca aagtttcatt
      601 atttaatgat gcgcagaaag agaagctgtt ggatcttgtc aacgagtggg tcggcatact
      661 aaacgacgaa gcggcgggtg tgaagctggc ggaggtcaaa gccaacctaa cggaaacgtg
      721 gttcgcgtgg agtggtccaa cgaccaacgg cagccccgcc tactttcgca tccagggccc
      781 aacgctctgg atcgaatact ccccacaacg catgcgcggc agcggcctcg acatcaacca
      841 catccacaca atctaccgcg acccaaccaa cgactacgcc gcgcggctgg taaagaaatg
      901 aaatcattct ttcttttgat ccttctaatt cttctcccgc aaagcgccgc ggcacacgta
      961 ctcgacgaat acttgcaagc cgcacaactc aacctaacgc ccaccggcgt gcgtatcgaa
     1021 ctgcgcctga ctcccggcgt agacgtcgcc gaccgcatct tcacgctgat cgatcttgat
     1081 cgtaacggcc aagcttcccc aaccgaacag cgcgcctacg cccaacgcgt cctcgacgac
     1141 ctctctctcg aactcgacaa ccgccctctt ccactcactc tcactgacgt agccttcccc
     1201 tcccgagccg aactacaaac cggcgacgcc ccaatcatcc tcgccgtctc cgccgacacg
     1261 aatttcacaa cctccaacga tcaccaacta acctttcgca acaaccatct cccaaccctg
     1321 agcgtctaca acgccaacgc cctaatccca accacccaca tcaaaatcac ctcccaacaa
     1381 cgcgaccccc tccaacgcac cctaatcctc cacttccacc ttccctcgac gacgaccatg
     1441 gccccctcaa ccccctggcc aatttggcgc ctcttcctct ggctttccga acttctgatt
     1501 tgaaattacc gtactctcct cggttcggct aaaatccctt ctaactttag agcttatgta
     1561 ttgtcctaat tgtggtcagc agcagatctc ggaggagatg aagttttgtt cgcggtgcgg
     1621 gctcgcgctg agcgggttgg cggagtggct cgcgggtggc cgcgttgtgc ccgccaagcg
     1681 gccggaagat tccgaggcgt tgtcgccacg gcgtaaagga atccgacgcg ccgccaagct
     1741 gatgttcttc agcggcgtgc tcttccccat tttcctggta attagtcttg cgttcgacga
     1801 aggcgggccg atggtcatcc cgttcatcgt ctttttcatc gcgctcgtga tgatgctcta
     1861 cgcacgcctc ttcagcgaca acaccgttcc catcacgaac caaacgtccc tgcccaatca
     1921 agcggctcaa acatcagccc tcggctcccc agcgcgcggc tcactccccg cggcaggcga
     1981 catgccgatg ccccccatcg gccggcaggt aagaaccaac gaattggccc aaccgccgag
     2041 cgtcaccgag aacactacga ggttgctgga taacgagtag cgcgtccagt ttacccggcg
     2101 gagtaacatc tcaggagcgt cgcttaaagc cgatttgcct tcgtgttgga accggctttt
     2161 ctgtcagctt ctttaactca tcgaacacaa ctgtaaagta gttgtcgtga gtggcgagct
     2221 ttcttaccac ggaaacgtac ttgcggttga gttcttcatt gctttccagc atctgcctga
     2281 gacgaacaaa ggctcgcatg atcgcgatat ttacatctac agcctgctca cttctcaata
     2341 cgccggagag cattgccacg ccttgttccg tgaacgcgtg cggtaggtaa cgccggccac
     2401 cgcgtccgat gtttgaggtc acaaattgtg acctcaaagc ttccgtctct tcggttgtta
     2461 gctgaaacat gaaatcgtca ggaaaccgcc ttctgttacg tgaaagctgc tgattcagtt
     2521 gtttggtcga cacgccatac agttcagcaa gatcgaaatc gagcatgacc ttctgacgac
     2581 gtatcaagta gatcctgcgt tcgatgagtt gaaccgaaag tgaaagatca gttgttttga
     2641 gtactttttt gtgaggcatg gcgacagaat agcagaccat gaaagttagc ccaaccaggg
     2701 atgaacctca cttcgactct gctatctaac caccgtgatc ttcgtgatcg gatgaacctc
     2761 ccaggcggtg gcgcgccagt tttcgggatg gcccggggag atgttttcgg attctgaggt
     2821 gtgaccgacg tcgaagtata gccagccttc gaattcgacc cagtggccca ctagctgcgc
     2881 gtgcagagtc tcttcagacc aatcaattcc ctgagccgca gcccacgcgc gtaacggcgg
     2941 cgtgacttcg agcacgacct gttcggtttg gccggcgtcc ttgtgtttcg caatgttgat
     3001 gtgaatgtcg cggccgcacg ggttgaaaca attcgtcgct tcagggcgcg cgtaggcgac
     3061 gtcgacgaca agtccctgga ctctggccgc gcggtcggtt gaccagcgag cagtgtcgtc
     3121 gccgggctgg agcaacgcgt cgagcgtgac acgcgaatcg aagtcagcgg cctgcggaaa
     3181 ggtggtcctg ttttttagtc gatgaagact tgccgccctg ctggtgagcg cgattccagc
     3241 gctcggacaa ttcagcgcca gcacgaccca aa
//
LOCUS       DASWTX010001181         3416 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_38646, whole genome shotgun sequence.
ACCESSION   DASWTX010001181 DASWTX010000000
VERSION     DASWTX010001181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3416)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3416)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3416
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38646"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2375
                     /locus_tag="VGD38_18025"
     CDS             <1..2375
                     /locus_tag="VGD38_18025"
                     /EC_number="4.1.1.71"
                     /inference="COORDINATES: protein motif:HMM:NF006914.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004591 - oxoglutarate dehydrogenase
                     (succinyl-transferring) activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="multifunctional oxoglutarate
                     decarboxylase/oxoglutarate dehydrogenase thiamine
                     pyrophosphate-binding subunit/dihydrolipoyllysine-residue
                     succinyltransferase subunit"
                     /protein_id="HEY0729989.1"
                     /translation="DVLQRAYCGKVGIEYRHIQSKEEKTWIREQIRREFVIPQPLPAE
                     VKKRLLWKLISAEQFERFLHTKYLGQKRFSLEGCETVIPVLDKLIDGAAERGVEEIVF
                     GMAHRGRLNVLANVIGNLCERIFAAFEGSVHPEFPADEGDVKYHQGATGERTLADGRK
                     VRLTLSPNPSHLEAVDPVVEGMVRAKQDEIMGQRGSTREDVMDQALPVLLHGDAAFAG
                     QGIVMETLNLAGLKGYRTGGTIHIIINNQIGFTTSPEAGRSTIYSTDVARMTQLPIFH
                     INGDDPEAAYRVLQIALNYRQEFNKDVVLDLIGFRRLGHNETDEPSYTQPLMYARVKA
                     HPGVRALYAKRLIKEGVITEEEVNDLIHERVRRYETALANAKQKVVDEPPQAPPPVEE
                     IDGSEVVETGVEPDTIKSIAHKIAVVPEGFNVNPKMVGQLARRAKMGDGTLPLDWGFA
                     ESIAFGSLVLEGTRVRLSGQDSGRGTFSQRHAVLYDTQTGKTWAPLSELRSEENPAAR
                     FDVFDSSLSEQGVLGFEYGYTVEFDDALVLWEAQFGDFGNGAQTIIDQYIAASEDKWK
                     QTSRLVMLLPHGYEGQGPEHSSARLERYLQLCAENNLQVCYPTTPAQYFHLLRRQVRP
                     GFERPLVVMTPKSLLRLPAAASRIEDLATGGFQPVIDDAEITDASAVRKVVLCSGKVY
                     YDLTEARKQSGDQNVAIVRLEQFYPFPRRMLREIFAKYTGASQFAWVQEEPHNMGGWT
                     FVRDRLQDMLGDSNELRYVGRSASASPATGSYSVHQKEQAELVAQALKVE"
     gene            2540..>3416
                     /locus_tag="VGD38_18030"
     CDS             2540..>3416
                     /locus_tag="VGD38_18030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729990.1"
                     /translation="MTRKIIAIIFIFICASAAWAVLGATIFARTYDSGAVSSNKVAST
                     WGAPQNQGPPSASFSTPITKQQDVPENGKFVRKIWTEEQVTEIPLESSKIDVDLDLEH
                     RQKGLLWYSTYKVRFAGVYGFRNPSDKEQSVVFKLQFPTTQAIYDNLTFVVDGTPAPI
                     SNEGNSAKTAVKIAAGKSAQLAVGYSSQGLNEWRYSFGQTEVAQVKDFNLKMRTNFKD
                     IDFPDNTLSPSEKHETGKGWDLNWSYTSLLSGYQIAMVMPEKLQPGPLAGRISLFAPV
                     SLFFFFFLMLIITTMR"
BASE COUNT          785 a          987 c          991 g          653 t
ORIGIN      
        1 tcgatgtgct gcaacgcgcg tattgcggga aagtcggcat tgaataccgg cacatccaga
       61 gtaaagaaga gaaaacgtgg attcgcgaac aaatccgccg cgagtttgtc atccctcagc
      121 cgctgccggc ggaagtgaag aagcgcctgc tttggaaact gatctccgcg gaacagtttg
      181 aacgttttct gcacacgaaa tacctgggcc agaaacgatt ttcactcgaa ggctgcgaga
      241 cggtgattcc tgtgctcgac aagttgatcg acggcgccgc cgagcgtggt gtcgaagaga
      301 tcgtcttcgg catggcccat cgcggacgtt tgaacgtgct cgcgaatgtg atcggaaatc
      361 tgtgcgaacg aatctttgcg gcgtttgaag ggtccgtgca tccggagttt ccggccgacg
      421 aaggcgacgt aaaatatcac cagggagcta ctggagaacg cacgctcgcg gatggccgta
      481 aggttcggct gacgctgtcg ccgaatccga gccacctcga agcagtcgat ccggtcgtcg
      541 agggaatggt gcgcgcgaag caggacgaga tcatgggcca gcgtggctcg acgcgtgaag
      601 acgttatgga tcaggcgttg ccggtgctgc tgcacggcga cgccgccttt gcgggtcagg
      661 gcatcgtgat ggaaaccctg aacctagcgg gtctcaaggg ctatcgcacc ggcggcacga
      721 tccacatcat catcaacaac cagatcggat tcacgacttc accggaagca ggacgttcga
      781 cgatctattc gaccgacgtc gcgcgcatga cccagttgcc gatctttcac atcaacggcg
      841 acgaccccga agccgcgtat cgcgtgctgc aaatcgcgtt gaactaccgt caggagttca
      901 acaaagacgt cgtgctcgac ctgatcggtt ttcggcgtct cggtcacaac gaaactgacg
      961 aaccgagcta cacgcagccg ttgatgtacg cgcgcgtgaa ggcgcatccg ggtgtgcgcg
     1021 cactctacgc caagcggttg atcaaggaag gcgtcattac cgaggaagag gttaacgacc
     1081 tgattcacga acgcgtgcgc cgctatgaaa cagcgctggc gaatgcgaag cagaaggtcg
     1141 tggacgaacc gccacaggcg ccgccaccag tcgaagagat cgacggctct gaagtggttg
     1201 agaccggagt cgagcccgac acgatcaaaa gcatcgcgca caagatcgcc gtcgttccgg
     1261 aaggtttcaa cgtcaatccg aagatggtgg gccaactcgc gcggcgcgca aagatgggtg
     1321 acggaacgtt gccgctcgac tggggtttcg cggagtcaat cgcgtttggg tcgttagtgc
     1381 tggaaggcac gcgcgtgcgt ttgagcggac aggattccgg ccgcggcacg ttcagtcagc
     1441 gtcacgctgt gctttacgac acgcaaaccg gaaagacgtg ggcgccgctt tcggagttgc
     1501 gctccgaaga aaatccggct gcgcgttttg atgtcttcga tagttcgttg tctgaacaag
     1561 gcgtgcttgg attcgagtac ggctacacgg tcgaattcga cgacgcactc gttttgtggg
     1621 aagcgcagtt tggcgatttc ggcaacggcg cgcagacaat catcgatcaa tacatcgcag
     1681 cttcagaaga caagtggaaa caaacgtcgc ggctcgtgat gttgttgccg cacggttacg
     1741 aaggacaggg accggaacac tcaagcgcgc gtctcgagcg ttatcttcag ttgtgtgccg
     1801 agaacaatct ccaggtctgc tatccgacaa cgcccgcgca gtatttccac ctgctgcggc
     1861 ggcaagtacg cccgggattt gaacggccgc tggtcgtgat gacgccgaag agtctgctgc
     1921 gtttgccggc tgcggcgtcg cgtatcgagg atctcgcaac gggaggattt caacccgtca
     1981 tcgacgacgc tgagatcacg gacgcttcag ccgtgcgcaa agtggtgttg tgcagcggca
     2041 aggtctacta cgacctgacg gaggcgcgaa agcagagcgg cgatcagaac gttgcgattg
     2101 tccggttgga gcagttttat ccgttcccac gacgaatgct gcgcgagatt ttcgcgaagt
     2161 atacgggcgc gtcgcagttc gcgtgggtgc aggaagagcc gcacaacatg ggcggttgga
     2221 ccttcgtccg cgaccgcctg caggacatgc ttggcgattc caacgaactg cgttacgtcg
     2281 gccggtccgc ctcagccagt ccagccaccg gatcctacag cgtccaccag aaagaacagg
     2341 ccgaactcgt cgcccaagcc ttgaaggtcg aataacctca ccttctctgc cccacaaagt
     2401 gcttgacaga cacgcccagc cggcctacca tcccattcag ctttgcgatg caaagagctt
     2461 tggaaaagat tttgagacgt ggccggacgc cgcgcgtgga agacaaacga actctcgagc
     2521 cgacacaagg agtcagacca tgaccaggaa aatcatcgcg attatcttca tcttcatttg
     2581 cgcctccgct gcgtgggccg tgctcggcgc caccatcttc gcacgcacct acgactccgg
     2641 cgcggtctcg tccaacaaag tcgcttccac ctggggcgca ccgcaaaacc agggaccacc
     2701 gagcgcttca ttcagcacgc ccatcaccaa acaacaggac gtgcctgaaa acggcaagtt
     2761 tgtccggaag atctggaccg aagaacaagt caccgagata ccactcgaga gcagcaagat
     2821 cgacgtcgat ctggatctcg aacaccgcca gaagggtctt ctttggtaca gcacttataa
     2881 agttcgtttc gccggcgtct acggctttcg caatccgagc gacaaggaac agagcgtcgt
     2941 cttcaaactc cagttcccga ccacacaggc gatctacgac aacctgactt tcgtcgtcga
     3001 cggcacgccc gcgcccatca gcaacgaagg caactcagct aaaaccgcgg tcaagatcgc
     3061 tgcaggaaag agtgctcaat tagccgtcgg ctacagctcg cagggtctca acgaatggcg
     3121 ctacagcttc ggccagacag aggtcgcgca agtaaaagat ttcaacctga aaatgcgcac
     3181 caacttcaaa gacatcgact tccccgacaa cacgctctcg ccgtcggaaa agcacgagac
     3241 cggcaaaggt tgggacttga actggtcgta cacgagcctg ctgtcgggtt atcagatcgc
     3301 gatggtcatg ccggagaagc tccagcctgg accactcgcc ggccgtatca gtttgtttgc
     3361 cccagtatca ctcttctttt tcttcttcct catgctcatc atcaccacga tgcgcg
//
LOCUS       DASWTX010001182         2274 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_144321, whole genome shotgun sequence.
ACCESSION   DASWTX010001182 DASWTX010000000
VERSION     DASWTX010001182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2274
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144321"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..457
                     /locus_tag="VGD38_18035"
     CDS             <1..457
                     /locus_tag="VGD38_18035"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEY0729991.1"
                     /translation="DEDQMNELMARTPIGKTVEVEYIRDGEKKKTQLTTISNDESRRL
                     TRDFERRPEGRAQFGYNDGDSERVQVPGPEPGKTIYGVKLNSLMQSRPADLAGIKEGD
                     VVIEFEGVPIRTPEEFLMRVRRALPYSTVKVVVMRGEEKLEIPVKMGKQ"
     gene            complement(519..854)
                     /locus_tag="VGD38_18040"
     CDS             complement(519..854)
                     /locus_tag="VGD38_18040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729992.1"
                     /translation="MKKAGLFMELVATYRKHGWELRGVLLQPATVSEFHAGETELLSN
                     VPVREATFDALWFSRPSHNQREAWELRLLAQTPYALFETFEQDETEEERQDVKQEMEA
                     RMRDYASEK"
     gene            1058..1915
                     /locus_tag="VGD38_18045"
     CDS             1058..1915
                     /locus_tag="VGD38_18045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729993.1"
                     /translation="MATQQLPVNTIRELKESSEPVPFYEALKKALKKRKANLDLICPP
                     ADPVARRILEEYGAVYVANKKVKPPPVCLFTNEEQVTEFQDEAGVSAEYIAYDTIELQ
                     PEAMKHLLKAREEAQKEGLDITPRDGAEAARRNYEDSVRLWNSRFQPALDYWLAQGRL
                     TADDVNRLRALPLKQQIAEVLELEKTGIYFSKDLSKSILYSIAAPGTSQHIAMLAFDV
                     NEFENPRVREIMAKHGWFQTVLSDLPHFTFLGLKEKDLPKHGLRSVEVNGQVFWIPNV
                     QSAHPGLDK"
     gene            2036..>2274
                     /locus_tag="VGD38_18050"
     CDS             2036..>2274
                     /locus_tag="VGD38_18050"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY0729994.1"
                     /translation="MDVPQFIAGRFRIEREIGTGGMGTVYLATHLGLERPVAVKIIRR
                     EFAGDADVAERFLREARTMAKLRHANAATIFDAGN"
BASE COUNT          563 a          611 c          627 g          473 t
ORIGIN      
        1 cgacgaagac cagatgaacg aattgatggc acgcacgccg atcggcaaga cggttgaagt
       61 cgagtacatc cgcgacggtg agaagaagaa gacgcaactg acgaccattt caaacgacga
      121 atccagacgg ttgacgagag actttgaaag acgtcccgaa ggccgcgcgc agtttggtta
      181 caacgatggt gactcggagc gcgtgcaggt gccgggaccg gaaccgggga aaacgatcta
      241 cggcgtgaag ctcaattcgt tgatgcaaag ccgtccggcg gatctcgccg ggatcaaaga
      301 aggcgacgta gtgatcgagt ttgaaggcgt gccgattcgc actccggagg aatttctgat
      361 gcgcgtgcga cgcgcgctcc cttacagcac tgtgaaagtc gtcgtgatgc gtggtgaaga
      421 aaagttggaa atccccgtga agatgggcaa gcaataagcg ttttgagttc aagctttagc
      481 ttgtgcttcg cgcagcagcc taaaggctga actcaaaact atttctcaga ggcgtaatct
      541 cgcattcgcg cctccatctc ttgtttgacg tcctgacgtt cttcctcagt ttcatcctgt
      601 tcgaacgttt caaagagcgc gtagggagtt tgcgcgagga ggcgcagctc ccacgcctcg
      661 cgttggttgt gagaaggtcg tgaaaaccag agcgcgtcaa acgtagcttc acgcaccgga
      721 acgtttgaaa gcagttccgt ttccccggcg tggaactcgg aaacggtcgc aggttgcagc
      781 agcacgccgc gcagttccca cccgtgcttg cggtaggtgg cgaccagttc cataaataaa
      841 cctgcttttt tcataagatt tcctgaaccg aggttagcac atatcaggat atccctgggt
      901 tgaccgcgcg aaatgccgac acttatcatc tccttcgctt ttcgggagcg gtcatttgag
      961 aactcgcttt tatgtcagcg gcgcaaatct aataagtctc gtttttattc tgatctgtcg
     1021 cagtgttgta ggcgcggcaa caccggcact ggagaacatg gcaacacagc agctacctgt
     1081 aaacacgatt agggaattaa aagaatcatc cgagccggtt cccttttacg aagccctcaa
     1141 gaaggcactc aaaaaacgta aggcaaacct cgacctcatt tgtcctcccg ccgatccggt
     1201 cgcgcggcgc attctcgaag aatacggcgc cgtttatgtt gcgaacaaga aggtgaaacc
     1261 gccaccggtt tgcctgttca ctaatgaaga acaggtaaca gagtttcagg acgaagccgg
     1321 agtcagcgcc gaatacatcg cttacgacac catcgagctt cagcccgaag cgatgaaaca
     1381 tctgctcaaa gcccgcgaag aggcgcagaa agagggcctg gacatcacac cgcgcgacgg
     1441 cgccgaagcc gcgcgtcgca attacgaaga cagtgtgcgg ctctggaact cgcggtttca
     1501 gccggcgctc gactactggc tcgcgcaagg ccgtcttacc gctgacgacg taaatcgttt
     1561 gcgcgcgctg ccgctaaagc agcagatcgc tgaagtgctg gagctcgaaa agacgggaat
     1621 ctatttcagc aaagacttat cgaaatcaat cctctattca attgccgccc ctggcacttc
     1681 ccaacacatc gcgatgctcg cgtttgatgt aaacgagttt gagaacccgc gcgtgcgcga
     1741 gatcatggcg aagcatggtt ggtttcaaac tgtactcagc gacttaccgc atttcacgtt
     1801 tcttggtctg aaggaaaaag atctgccgaa gcacggactg cgcagcgtcg aagtaaacgg
     1861 acaggtattc tggatcccga acgtccaatc cgcgcacccg ggacttgata aatagctgga
     1921 caaaggtgct acactatgcg ccactgacgg cacggtcggt ctcttccccc agcccaaaga
     1981 aaaaagttag tagcttgtaa gccctgacgg cctctaaccc gaaagaaggt cagatatgga
     2041 tgtcccccaa tttatcgcgg gcaggttccg gattgaacgc gaaatcggga ccggcggcat
     2101 gggcactgtc tatctcgcca ctcacctggg tctcgaacgt ccggtagcag tgaaaatcat
     2161 caggcgtgaa tttgccggcg acgctgacgt cgcagagcgt tttctgcgcg aagcacgcac
     2221 gatggcgaag ttgcgccatg caaacgcggc gaccattttc gacgcgggta actt
//
LOCUS       DASWTX010001183         3104 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_172184, whole genome shotgun sequence.
ACCESSION   DASWTX010001183 DASWTX010000000
VERSION     DASWTX010001183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3104
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172184"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..471
                     /locus_tag="VGD38_18055"
     CDS             <1..471
                     /locus_tag="VGD38_18055"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY0729995.1"
                     /translation="GSAGGLLVGAVSNMRPDLFKAVVSHVPFVDVLNTMLDATLPLTT
                     SEYIEWGNPNEKPAYDYMKKYSPYDNIEKKNYPATLVKVSLNDSQVPYWEGAKLVAKL
                     RAMKTDNNPLLLKVNFGAGHGGASGRYDALREEAFDFAFMLWQMGIADRDRVTE"
     gene            505..2964
                     /locus_tag="VGD38_18060"
     CDS             505..2964
                     /locus_tag="VGD38_18060"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY0729996.1"
                     /translation="MIGSTLGNYKILEKLGEGGQGTVYKAVDSKLGRTLVIKVLPAEL
                     TSKEANLKRFEREARLASALDHPNICTIFDLNEINGIHFIAMQYIEGRNVRQLVNGRP
                     LSLESALSITLQTADALAAAHARGIIHRDIKAGNVMVTPSGQVKVLDFGLAKLLDEDA
                     ARTSGIHHTEITEVGVPYGTATYAAPEQARGDRVDARADIFSTGVLLYEMLTGTWPFQ
                     GQTAVEVRHAVLNDEPKPISQMRPGRIPSGLQGIIDKALAKDPRDRYQKISYFATDLR
                     DVIREIGADSLPGLDESAMPVAPKHMPRNPVTRALRWLSGGKSPERAAGDRSPTRSRD
                     SHDSPMTSLGDRERKSVAILPFKNVGNEREIDFYQFSLADAVITELARVRSLVVRPSS
                     VIVKYQNKTVDPADAGRELRVDAILTASFLRAGERLRVTAQLLDVRTSEILWSERIDA
                     DASDIIGVQDTIVQRIVEGLRLELSPDEKVQLARGATTDAAASEEYLRGRDCLATFIY
                     HTIQREHLDAAIEHFRRAIEIDPQFALAYSALGSAYVNRVLKGLGQAGDHEMAQKKFR
                     KALELDPKLLEARRQMVFIYLTDGQKTKAREEIELLRREYPNDSGVQFVRGVVARLDG
                     DYPTALRSFGRMALLNPEEGVLASYNRARIFMYQQKYDEALRELDEGAEIEPEHPVVK
                     VFRARVLYYRGEVDEATQLLDQVLEKHPQMDGIRPILAICLSAQGQHTKANEQLTQKV
                     RQVAEADYDIAYWLASAYLLQGRQVEALRWLETAIRLGNENYRWFETDPTWTDMHEDP
                     RFVELMNGVKSQRVPAGDQTA"
BASE COUNT          685 a          907 c          944 g          568 t
ORIGIN      
        1 ggcagtgcgg gtggtctgtt ggtgggcgcg gtgagcaaca tgcggccgga tctgttcaag
       61 gcagtcgtgt cacacgtgcc gtttgttgat gtgctcaaca cgatgctcga cgcgacattg
      121 ccgctgacga cgagtgaata catcgagtgg ggcaatccca acgagaagcc ggcgtacgac
      181 tacatgaaga agtattcgcc gtacgacaac atcgaaaaga aaaactatcc ggcgacactg
      241 gtcaaagtct cgttaaacga cagccaggtg ccatactggg aaggcgcgaa gctggtcgcg
      301 aaattgcgtg cgatgaaaac cgacaacaat ccgctgctgt tgaaggtaaa ctttggcgcc
      361 ggccacggcg gcgcctccgg ccgctacgac gccctgcgcg aagaagcgtt tgacttcgcg
      421 ttcatgctct ggcaaatggg catcgccgac cgcgaccgcg tcacggagta ggacgaaaag
      481 aaaggcttta tagaccgtcc caacatgatt ggctcgacac tggggaatta caagatcctc
      541 gagaagctcg gtgagggcgg tcagggaacg gtctataagg ctgtcgattc gaagttaggc
      601 cgcacgctcg tcatcaaagt cctgccggcc gaactcactt ccaaagaggc aaacctcaaa
      661 cgcttcgaac gcgaagcgcg gctcgcctcc gcgctcgatc acccgaacat ctgcacgatt
      721 ttcgatctca acgagatcaa cggcatccac ttcatcgcga tgcagtacat cgagggacgt
      781 aacgttcggc agttggtcaa cggccgcccg ctctcgctcg aaagcgcttt gtcgatcacg
      841 ttgcaaactg ccgacgcact cgcggccgca cacgcgcgcg gcatcattca tcgcgacatc
      901 aaagccggaa acgtgatggt cacgccgtcg ggtcaggtga aagtgctcga cttcggcctc
      961 gcaaaactgc tcgacgaaga cgccgcccgc acatccggta ttcatcacac ggaaatcact
     1021 gaagtcggcg ttccgtacgg caccgcaacg tacgcggcgc ccgaacaagc gcgcggcgac
     1081 cgcgtcgatg cgcgcgcgga catcttttcc accggcgttt tgctttacga aatgctgacc
     1141 ggcacctggc cgtttcaggg acagaccgcg gtcgaagtgc gccatgcggt tttgaacgac
     1201 gagccgaagc cgatctcgca gatgcgtccg ggccgcatac cttcaggact gcagggaatc
     1261 atcgacaaag cgctcgcgaa agatccgcgc gatcgttatc agaagatctc ttacttcgcc
     1321 accgacctgc gcgacgtcat tcgcgagatc ggcgccgact cgctgccggg cctcgacgaa
     1381 agcgcgatgc ccgttgcgcc gaaacacatg ccgcgcaatc ccgtgacccg cgcgttgcgc
     1441 tggctgagcg gcggtaagag tcctgagcgg gcagcgggag acaggtcgcc gacgcgctcg
     1501 cgcgattcgc acgacagtcc gatgacgagt ctgggagatc gtgaacgcaa gagcgtcgcg
     1561 attcttccgt ttaagaacgt cggcaacgaa cgcgagatcg acttctacca gttctcgctt
     1621 gccgacgccg tgatcaccga gctcgcacgc gtgcgatcgc tggtcgtgcg gccgtcgtcg
     1681 gtgatcgtga agtatcaaaa caagaccgtc gatccggctg atgcgggacg cgagttgcgc
     1741 gtcgatgcga ttctcaccgc gtctttcctg cgcgccgggg aacgcctgcg cgtcaccgcg
     1801 caactactcg acgtccgcac gagcgagatt ctttggagtg aacgaatcga cgcggacgcc
     1861 agcgacatca tcggcgtgca ggacacgatc gtgcagcgca tcgtcgaggg tctgcgtctc
     1921 gaactgagcc ccgacgaaaa agtccaactc gcaagaggtg cgacgaccga cgcggcggct
     1981 tccgaagaat acctgcgcgg gcgcgactgt ctcgcgacgt tcatctatca cacgatccag
     2041 cgcgaacatc tcgacgcggc catcgaacac ttccgccgcg cgatcgagat cgatccgcag
     2101 tttgcgctcg cgtattcagc gctcggcagt gcttacgtca atcgagtgtt gaaagggttg
     2161 ggccaggcgg gcgatcacga gatggcgcag aagaagtttc gcaaggcgct ggagctcgac
     2221 ccgaaactac tcgaagcgcg ccggcaaatg gtgttcatct atctcaccga cgggcagaag
     2281 acgaaggcgc gcgaggagat cgaactgctg cggcgcgagt atccaaacga ttcgggcgtg
     2341 cagttcgttc gcggtgtggt tgcgcgcctc gacggcgatt accctacggc gttgcgcagc
     2401 ttcgggcgga tggcgttgtt gaatccggaa gaaggcgtgc tcgcgagcta caaccgcgcg
     2461 cgcatcttca tgtatcaaca aaagtacgac gaggcgttgc gtgagctcga cgaaggcgct
     2521 gagatcgaac cggagcatcc ggtggttaaa gtgtttcgcg cgcgtgtgct ttattaccgc
     2581 ggcgaagtcg acgaagcaac gcagctcctc gatcaagtgc tcgagaagca cccgcagatg
     2641 gacggcatcc ggccgattct cgcgatctgc ctgagcgcac aaggtcaaca cacaaaagcc
     2701 aacgaacagt taacacaaaa agtgcgccag gtggcggaag cagattacga tatcgcttac
     2761 tggctcgctt cggcgtatct cttgcagggt cgtcaggtgg aggcattgcg gtggttggaa
     2821 actgcgattc gtctgggcaa cgaaaactac cgctggtttg aaacggatcc gacttggaca
     2881 gacatgcatg aagatccacg ttttgtggag ctgatgaatg gagtcaagag tcaaagggta
     2941 ccagccgggg accaaactgc atgagaactt tcgtcgttgg cgacatacat ggtcgatgcg
     3001 cgcagctcct caacctcctc gatatgctgc cgcgagatcc tgagtcggat acgctggtat
     3061 tcctcggtga cctgatcgat cgcggcgccg acgcgccggg ttgt
//
LOCUS       DASWTX010001184         1922 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_426709, whole genome shotgun sequence.
ACCESSION   DASWTX010001184 DASWTX010000000
VERSION     DASWTX010001184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1922
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_426709"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(52..963)
                     /locus_tag="VGD38_18065"
     CDS             complement(52..963)
                     /locus_tag="VGD38_18065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729997.1"
                     /translation="MTETTSIDRMVLERRVYAPVIRQPGFATLVAQAVVGGFFGNVVV
                     VIAKILLDDHPYNSFYIFSLPFLLAGGLATGVPAGLLIWAGSKLAHGSLLTINRSLIG
                     IFVMSLAWFLFWSVLGQQEISRTELLWALPLILAPGVMIGLITGSRLRVGRELVRRGE
                     ADATALKIFAGLTGLVLRVVVVFLFLASLILEITTLQSYFLESAPSENLRRTLVGNSF
                     LFGHAALGVVILFVRLKFSPLATLAAIAAAPLVAFLWAFPDMDDVTRIVLLGYVGVWG
                     LFLLSRSRVIDVALSALNKELRYYLID"
     gene            complement(960..1679)
                     /locus_tag="VGD38_18070"
     CDS             complement(960..1679)
                     /locus_tag="VGD38_18070"
                     /inference="COORDINATES: protein motif:HMM:NF036524.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEY0729998.1"
                     /translation="MRKKKAAKTLKGDQTKALILETALDIFRERGYEETTMRAIAEKA
                     GVSLGNAYYYFRSKEYLIQAFYQRLHDEHLAASLPALENKDTLKARLLTVMRLRIDIS
                     KPYHHFAGVLFKTAAHPESPLNPFSDESDPVREQSIALFAKVLDGTKARIPKDLKAEL
                     PYLLWVYQMGIVLFWIHDPSRGHRRTYRLIDHTVDLLDKLIHLASNPFMRPLRKQALR
                     LVEEIREALPDDDDDDKKEER"
     gene            complement(1706..>1922)
                     /locus_tag="VGD38_18075"
     CDS             complement(1706..>1922)
                     /locus_tag="VGD38_18075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0729999.1"
                     /translation="DLTKQDLTVISPDGAVYFGPKAWLMVLWALARYREWSYRLASPE
                     LLPTTKRVVSAISQNRYQISRVAGLSR"
BASE COUNT          466 a          546 c          502 g          408 t
ORIGIN      
        1 cgccgatgaa tcccgttgcg cccgtgattg cgactctcat gatcctgctc cttagtcaat
       61 caggtaatag cgtagttcct tgttgagcgc cgagagcgcc acatcgatta ctcgagagcg
      121 cgatagcaga aacaaccccc aaacgcccac gtatccgaga aggacgatgc gagtcacgtc
      181 atccatgtcc ggaaacgccc ataagaacgc tactagtggc gcggctgcga tcgccgccag
      241 cgtagcaagc ggcgaaaact tcaatctcac gaaaagaatg acaacaccta gtgcggcatg
      301 gccgaacagg aacgagttgc caaccagagt tcttcgtaga ttttcactcg gcgcagattc
      361 gaggaagtac gactggagag tagtgatctc taaaattagc gacgccaaaa acaaaaagac
      421 aacaacaact cgcaggacta aacctgtaag ccccgcaaag atcttaagtg ctgttgcgtc
      481 tgcctctcct ctgcgaacca gttctcgccc gaccctcaac cgtgagcccg ttatcaaacc
      541 aatcatcact cccggcgcga ggatcagcgg aagcgcccaa agcagttcgg tccgtgaaat
      601 ctcttgttgc cccaatactg accagaagag aaaccaggcg agagacataa caaagatgcc
      661 aatcagggaa cgattaatag tcagcaaaga cccgtgagcc aatttgctac cggcccagat
      721 gagtaaacct gccggtactc ccgttgcaag tcctccagcc agtagaaaag gtaaagaaaa
      781 gatgtagaag ctgttgtatg ggtggtcatc gaggagaatc ttggcaataa ccacaacaac
      841 gttcccaaag aagccgccga cgaccgcttg cgccaccagc gtcgcgaaac ccggctggcg
      901 gatgaccggc gcgtaaacac gacgttcaag aaccattcga tcgatcgaag tcgtctctgt
      961 catctctcct cctttttgtc atcgtcgtca tcgtccggta acgcttcgcg aatctcctcc
     1021 accaaccgca gcgcctgctt gcgcagcgga cgcatgaagg gattgctcgc gagatgaatc
     1081 agtttgtcga gcaggtcaac ggtgtgatcg atgagccgat acgtgcggcg atggccgcgt
     1141 gagggatcgt gaatccagaa gagcacgatg cccatttgat agacccaaag caggtagggc
     1201 agttcggctt tcaggtcttt cggaatgcgc gcctttgttc cgtctaacac tttcgcaaac
     1261 agcgcaatgc tctgttctct gaccggatcg gactcgtcag agaacggatt caacggactc
     1321 tccggatgcg ccgcggtttt gaagagcacg cccgcaaaat gatggtacgg cttcgagatg
     1381 tcgatcctga gccgcatcac cgtcagcagg cgtgctttca acgtgtcttt gttttccagc
     1441 gccggcagcg aagccgcgag atgctcgtcg tgcaggcgtt gatagaacgc ttggatcaga
     1501 tactccttcg agcgaaagta gtagtaggcg tttccgagcg acacgccggc cttttcggca
     1561 atcgcgcgca tcgtggtctc ttcgtaaccg cgttcgcgaa agatgtcgag cgcggtttcg
     1621 agaatcagcg ccttcgtctg atcgcccttg agcgttttcg ctgctttctt tttgcgcatc
     1681 gccgtcatgg gatttattta gcctcttacc tacttagccc agcaacacgg ctgatctggt
     1741 atctgttttg tgagattgcc gatacgacgc gcttcgtcgt cggcaacagt tccggactgg
     1801 cgagcctgta ggaccactcg cgataacggg ccagtgccca cagcaccatc agccaggctt
     1861 tgggtccgaa ataaacagcg ccatcaggac ttattaccgt caggtcctgc ttcgtcagat
     1921 cg
//
LOCUS       DASWTX010001185         1881 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_320981, whole genome shotgun sequence.
ACCESSION   DASWTX010001185 DASWTX010000000
VERSION     DASWTX010001185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1881)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1881)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1881
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_320981"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            184..1545
                     /locus_tag="VGD38_18080"
     CDS             184..1545
                     /locus_tag="VGD38_18080"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HEY0730000.1"
                     /translation="MSLLPRIALFSLIATFTIATACTPAPNNGNSPATTQATPSRSPS
                     PTASPASTQASVRVTLPLLNALLDEDAFVRQLKDKAKLSDQQIESLKRTSQDAIDHLR
                     ETNAEESDTNGTDAATRAEEQLRSIVGDEKAQQVAAIANEYWAKGDPAAEGAGANGVE
                     MLPGPNAVPTDTRVVVNIPAYRMDLFQNGSLVKSYKVGIGYPQFPLPLGIRKAQTVIF
                     NPSWTPPDSPWVAKMKNVTAGETVEPGSKDNPLGPIKIPIGLPSLIHGGKAPAKIGKF
                     ASHGCVGMTNAQIRDFAMQLMRAANNEVSEKEIAQYLENKTETKTVKLDQVIPVELRY
                     ETIVLEDGKLHIYKDVYGHDTNTEENLRSVLEAQGVKLEDLPAEQRQQALDALNAMST
                     NPNATASPSPSPSPDKKTARTARKKGPQNEVVIDLGTLAQKGYPAPVSLDDGSGTRRR
                     SNT"
     gene            complement(1534..>1881)
                     /locus_tag="VGD38_18085"
     CDS             complement(1534..>1881)
                     /locus_tag="VGD38_18085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730001.1"
                     /translation="FRQIEDAMHGREIFEPTLADKRAILHEYFDMLREDMPETPAINR
                     MKQLAGQFTRGLPGGALFRTSIYHSHSVDEVLDRIEEYFSAILEGRPYYGEAGAPTEE
                     APALDSCEAALSV"
BASE COUNT          472 a          568 c          525 g          316 t
ORIGIN      
        1 ataaccgcgc gtctccacac acgcacgatc tctgttcacc gtgtccgcta atgatgcaga
       61 aaagtggccg cgcaaacata taacgtggga aaagctgcgc gccagtgagg gaacgctcgt
      121 tgcacctcta accgcgcgaa ctaatcatct ccccacagat tcacgaagga gagaacttaa
      181 tccatgagct tgctgccgcg cattgcgctc ttcagtctta tcgcgacgtt tacgatcgca
      241 accgcttgca ccccggcgcc gaacaacggc aattcaccgg cgacgacgca agcgacacca
      301 tcgcgatcgc cgtcaccaac tgcgtcaccc gcgtcgacgc aagcgtcagt tcgagtaaca
      361 ctgccgctgc tcaacgcact gctggatgaa gacgctttcg tacgccaact caaagacaag
      421 gcgaagcttt cagaccagca gatcgaatca ctcaaacgca cgtcgcagga tgcgatcgat
      481 caccttcgcg aaacgaacgc tgaagaatca gacacgaacg gcactgacgc ggccacgcgc
      541 gccgaggaac aactgcggtc catcgtcggc gacgagaaag cccaacaagt cgctgcgata
      601 gccaacgagt attgggccaa gggcgatccc gcggctgaag gcgcgggcgc gaacggcgtc
      661 gagatgttac cgggcccgaa tgccgtgcct accgacacgc gcgttgtcgt caacatcccg
      721 gcgtatcgca tggatctctt tcagaatggt tcgctggtga agtcgtacaa agtcggcatc
      781 ggctatccgc aattcccgtt gccactcgga attcgcaaag cacagacagt gatcttcaac
      841 ccgtcgtgga caccgcccga ttcgccgtgg gtcgcaaaga tgaagaacgt gacggcgggc
      901 gagacggtcg aaccgggcag caaagacaac ccgcttggac caatcaagat cccgatcggt
      961 ttgccgtcgc tcattcacgg cggaaaggcg cccgcgaaga tcggcaagtt tgcttcgcac
     1021 gggtgcgtgg gtatgactaa cgcacagatc agagacttcg cgatgcagct aatgcgcgcc
     1081 gcaaataacg aagtctcaga aaaagagatc gcgcagtatc tagaaaacaa aaccgagacg
     1141 aaaacagtga aactggacca ggtgattccg gtcgaactgc gttacgaaac gatcgtcctc
     1201 gaagacggca agctgcacat ctacaaagac gtctacgggc acgacacaaa cactgaagaa
     1261 aacctgcgca gcgtgctcga agcacagggc gtgaagctcg aagaccttcc ggctgaacaa
     1321 cggcagcaag cactcgacgc gctgaacgcg atgtcgacca atccaaacgc cacggcgtcg
     1381 ccttcgccga gtccgtcacc cgacaagaag actgcgcgca ccgccagaaa gaaagggccg
     1441 cagaacgaag ttgtaatcga tttgggaacg ctggctcaga agggttaccc ggcgccggtg
     1501 agtctcgacg acggttcggg cacaaggcgg cggtcaaaca cttaacgcgg cttcgcagga
     1561 atcaagcgcc ggggcttctt cggtaggagc tccggcctcg ccgtaatacg gacgtccttc
     1621 aagaatcgca ctgaaatact cttcgatccg atcgagcact tcgtcaaccg agtgcgagtg
     1681 ataaatcgac gtgcggaaca gcgcgccgcc cggtaagccg cgcgtgaact gtccggccaa
     1741 ctgcttcatg cgattgatcg cgggcgtctc gggcatatct tctcgcagca tgtcgaagta
     1801 ctcgtgcaaa atcgcgcgct tgtcggcgag cgtcggttcg aagatctcgc gcccgtgcat
     1861 cgcgtcttcg atttgccgga a
//
LOCUS       DASWTX010001186         3548 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_126399, whole genome shotgun sequence.
ACCESSION   DASWTX010001186 DASWTX010000000
VERSION     DASWTX010001186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3548
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126399"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1088
                     /locus_tag="VGD38_18090"
     CDS             <1..1088
                     /locus_tag="VGD38_18090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730002.1"
                     /translation="NALANPGTYFELQFTATAGVSYRLWIRGRAQNDDPFNDSIFIQF
                     NDSIDGQGAASNRIGTTSAEVINLEDCFACGLSSWGWQDNGWGVGVLGPLVRFANNGT
                     HTLRIQPREDGLSIDQVVLSPSLYLNTAPGAVVNDTTILPKATPTPTPTPTPTPTPTP
                     TPTPTPTPTPTPAGDVVLYASQGVQASGNYIVVADATAAGGARLHNPDQGAAKLSAPL
                     ANPTHFVQFQFTAQAGIPYRLWIRGKAQNDDPFNDSIYVQFNDSTDGQGVAKSRIGTT
                     SAEVINLEDCFACGLSGWGWQDNGWGVGVLGPTIFFANSGTHTIRIHYREDGLSIDQI
                     VLSPTTYLTQSPGAVINDTTILPKSGP"
     gene            1095..2021
                     /locus_tag="VGD38_18095"
     CDS             1095..2021
                     /locus_tag="VGD38_18095"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY0730003.1"
                     /translation="MRLDIVIPTYNRSELLKKALRSLLEARVPPGLEVEITVVDNNSK
                     DDTREMVLAQQAEAPLPIHYVLEKRQGRSPALNAGVAATSGTHVGFVDDDEEVDPSWY
                     ERIFSEFTEHDIDFLGGPCVPRFESDVPEWLPREYNAVLGAADGGPKRIPFDQNYPGI
                     LMGGNAIFTRAIMEKVGPYSTSLGRSGKKLLSCEDEDMYQRLLAAGARGMYVPELIVH
                     AFVPAERLTKRYHRAWCFWQSVSSAVLDRISPQPTPYVLGVPRYFYGRALRGMFRVVS
                     IWKPGPADRFSKELALWELAGFFYGKHFYRPE"
     gene            2032..>3548
                     /gene="asnB"
                     /locus_tag="VGD38_18100"
     CDS             2032..>3548
                     /gene="asnB"
                     /locus_tag="VGD38_18100"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HEY0730004.1"
                     /translation="MCGIAGFVDYWDRRGGKPFERGRLLKGMCDVIRHRGPDDDGFLL
                     QDGVALGMRRLSIIDLAGGAQPISGEDGSVSIVFNGEIYNFQELRPELEKRGHVFKTH
                     SDTETIVHAYEEYGPECVRHLRGMFALAIWDDKTRELYIARDRVGKKPLYYTVTPGQT
                     LVFGSEIKSILEHPDVEREINLEALDAYLTLGYVPDPLSIFRDIHKLPPGHYLTFSNG
                     RVRTKQYWDFKFEPGESRKPEDYLEELRELLNESVRLRLISDVPLGAFLSGGIDSSTI
                     VALMAQHMNQPVKTFSIGFHEDSYNELKYARLTAKKLGTDHHEFFVTPQICDVIDELV
                     WHFDEPFADPSAIPTYMVSKLARDHVTVALSGDGGDELFAGYTHYVVQESRRAFSSLP
                     KALRAGVMRPLSYRLPHGAWGRNYLHNISLDPIDRYLDSLSYFTGLTRKTLYTADFQR
                     ALGATDRVARSFREYASHVKTNDPLDQLLYIDGKTYLPGDILTKVDRMSMATSLEV"
BASE COUNT          725 a         1070 c         1051 g          702 t
ORIGIN      
        1 cgaacgcgct cgcaaatccg ggcacgtatt tcgagttgca gtttacggcc actgcgggtg
       61 tcagttaccg cttgtggatt cgtggcaggg cgcagaacga cgatccgttc aacgactcga
      121 tcttcatcca gttcaacgac agcatcgatg gacaaggcgc cgcgagcaat cgcatcggaa
      181 cgaccagtgc ggaggtcatc aatctcgaag actgctttgc gtgcggtttg agcagttggg
      241 gttggcaaga caacggttgg ggcgtcggcg tgcttgggcc attggttcgc tttgcaaata
      301 acggcacgca cacgttgcgc atccagccgc gcgaggatgg gctctcgatc gatcaggtcg
      361 tgctgtcgcc atcgctgtat ctgaacacgg cgcccggcgc cgtcgtgaac gacaccacga
      421 ttctgcccaa agcaacaccg acaccgacac caactccgac gccaacaccg acacccacgc
      481 caactccgac acctacgcca acaccaacac caacgccggc cggcgacgtg gtgctgtacg
      541 cgtcgcaagg cgtgcaggcg tccggaaact acatcgtcgt cgccgatgca acggccgcgg
      601 gcggcgcacg tttgcacaat cccgatcagg gcgccgcgaa actcagcgcg ccgctcgcga
      661 accccacgca cttcgtgcaa ttccaattca ccgcccaggc gggaattcct taccgcttgt
      721 ggatacgcgg caaggcgcag aatgacgatc ctttcaacga ctcgatctac gtgcagttca
      781 acgacagcac cgacggtcaa ggcgttgcaa agagccggat cggcaccacc agcgcggagg
      841 tgatcaatct cgaagactgt tttgcgtgcg gcctgagcgg ctggggttgg caggacaacg
      901 gctggggcgt cggcgtgctt ggtccaacca tcttcttcgc caacagcggc acacacacga
      961 tacgaattca ctatcgcgaa gacgggctct cgatcgatca gatcgtgttg tccccgacga
     1021 cctatctgac ccagtcaccc ggcgcggtaa tcaacgacac cacgatactg ccgaaatcag
     1081 gaccatagaa tcgcatgcgg ctcgacatcg tcatccctac ttacaatcgc agtgagctgc
     1141 tgaagaaggc acttcgcagc ctgctggagg cgcgtgtgcc gccggggctc gaggtggaga
     1201 ttacggtcgt cgataacaac tcgaaggacg acacgcgcga gatggtgctc gcgcagcagg
     1261 ccgaggcgcc gctgccgatc cactacgtgc tcgaaaagcg tcaagggcgg tcgccggcgc
     1321 tcaacgccgg tgtcgctgca accagcggca ctcacgtcgg cttcgtcgac gacgatgagg
     1381 aggtcgaccc gtcgtggtac gagcgaatct tttcagagtt caccgaacac gatatcgatt
     1441 tcctcggcgg tccctgcgtg ccgcgcttcg aaagtgacgt gccggagtgg ttgccacgcg
     1501 agtacaacgc agtgctcggc gccgccgatg gcggcccgaa gcgcattccg tttgaccaaa
     1561 attatcccgg cattctgatg ggcggcaacg cgattttcac gcgcgctatc atggagaagg
     1621 tcgggccgta ttccacatct ctcggacgta gcggaaagaa gctactttcg tgtgaagatg
     1681 aggacatgta ccagagattg ttagccgcag gcgcgcgcgg gatgtatgtt cctgagctga
     1741 tcgtccatgc ctttgtgccc gctgagcgcc tgacgaagcg ttatcatcgc gcgtggtgtt
     1801 tctggcagag cgtctccagc gccgtgcttg accgcataag cccgcagccg acaccatacg
     1861 tgctcggggt gccgcgatat ttctacggcc gggcgctgcg cgggatgttc cgtgtggtca
     1921 gtatctggaa accgggaccg gctgaccgtt tttctaaaga gttggcactc tgggagttag
     1981 cggggttttt ctacgggaag cacttttatc ggcccgaata gctgaacgtt tatgtgtggt
     2041 atcgctgggt ttgtagatta ctgggatcgg cgcggcggaa agccgtttga gcgcggacgc
     2101 ctgctgaagg gcatgtgcga cgtcatccgc catcgcggcc cggacgacga tggattcctg
     2161 ttgcaggacg gcgtcgcgct tggcatgcgg cggctgtcca tcatcgacct ggccggcggc
     2221 gcacagccga tctccggcga ggacggctcc gtatccatcg tcttcaacgg cgagatctac
     2281 aacttccagg aactccggcc cgagctcgaa aaacgcggcc acgttttcaa aacccactcc
     2341 gatacggaaa cgatcgttca tgcctacgag gagtatggac cagaatgcgt gaggcacctg
     2401 cgcggcatgt ttgcgctcgc catctgggac gataaaaccc gcgagctcta catcgcgcgc
     2461 gatcgcgtcg gcaagaagcc gctttactac accgtcacgc ccggacaaac actcgtcttc
     2521 gggtccgaga tcaagtcgat actcgaacac ccggacgtcg agcgcgagat caatctcgag
     2581 gcgctcgacg cgtatctcac gctcggctac gttcccgatc cgctgtcgat ctttcgcgac
     2641 atacacaaac tgccgcccgg ccactacctg acgttttcaa acggccgcgt gcgcacgaag
     2701 cagtattggg atttcaaatt cgaacccggc gagtcgcgca aaccggaaga ctacctcgaa
     2761 gaattgcgcg agctgctgaa cgagtcagtc cgcctgcgtc tgatctcgga tgttccgctc
     2821 ggcgcatttc tgtccggcgg catcgattcg agcaccatcg tcgcgctgat ggcgcagcac
     2881 atgaaccagc cggtcaagac gttctcgatc gggtttcatg aagacagtta caacgagctc
     2941 aagtacgcgc gtctgacggc gaaaaaactc ggcaccgatc atcacgagtt cttcgtcacg
     3001 ccgcagatct gcgacgtcat cgacgagctc gtctggcatt tcgacgaacc gtttgccgat
     3061 ccgtcggcga taccgacgta catggtttcc aaactcgcac gcgatcacgt cacggttgct
     3121 ttgtcgggcg acggcggcga tgaattgttt gcgggttaca cgcattacgt ggtccaggaa
     3181 agccggcgcg cgttttcgtc gttgccgaag gcgttgcgcg cgggcgtgat gcggcctttg
     3241 agttatcgtt tgccgcacgg cgcgtggggc cgcaattatc tgcacaacat ctcgctcgat
     3301 ccgatcgatc gttatctcga cagtctttct tacttcacgg gtttgacgcg gaagacgctt
     3361 tacacggctg attttcagcg cgctttggga gcgacggatc gtgtggcgcg cagtttccgc
     3421 gagtatgcga gccacgtgaa gacaaacgac ccgctcgacc agttgctcta catcgacggc
     3481 aagacgtatc tgcccggcga cattctgacg aaagtcgatc gcatgagcat ggcgacgtcg
     3541 ctggaagt
//
LOCUS       DASWTX010001187         1768 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_253513, whole genome shotgun sequence.
ACCESSION   DASWTX010001187 DASWTX010000000
VERSION     DASWTX010001187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1768)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1768)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1768
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253513"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1768
                     /locus_tag="VGD38_18105"
     CDS             <1..>1768
                     /locus_tag="VGD38_18105"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY0730005.1"
                     /translation="KGIPPFQAAIDGTKEIGLAVMATTLSLLAVFLPVGFMGGIVGRF
                     MSSFGLTSAFAIAVSLLVSFTLTPILAARLIKRSDDAKERPLEKHTEPADHGSKQSRW
                     YRPIDRTYTSLLTWSMKHRWAVVVACVVVILSIVPLFMFVGKNFLPVDDQSQFEVQVR
                     APEGYTLAATSTLAERIAVDMRKLPGVTDTLTTIGGGQQEQVNLASIYVKLHPIEERD
                     VTQEQLMVRARNEVLAKYQQQYPGQLRTSVQQVAAISGGGFRNADIQYVIGGPDLQKL
                     TEYSDKLLEKMKTIPDVVDADSTLISGKPELRVVIDRARAADLGVRVGDIAQALNSLV
                     AGQKVSTFNAGTDQYDVRVRSVGQYRTSAEGLQRMIVSSTKVGWVSLDNLVRVEEGTG
                     PAAIDRLNRQRQVMLLGNIRPGGSQAAVIDQMNQFAKEIQIDPAYSTGLAGRSKELGR
                     AGYYFGLAFLLSFVFMYMVLAAQFESFIHPVTILLTLPLAIPFGILSLLMTGQTVNIF
                     SGLGLLLLFGVVKKNAILQIDHTNQLRERGMERFEAIIRANRDRLRPILMTTIALVAG
                     MLPLTLATGPGAGTNRSIGVLVV"
BASE COUNT          336 a          480 c          556 g          396 t
ORIGIN      
        1 aagggcatac cgccgttcca ggcggccatc gacggaacta aagaaatcgg tctcgccgtt
       61 atggcgacaa cactttcgtt gctcgcggtg tttctgcccg tcggtttcat gggcggcatt
      121 gtcggccggt tcatgtcgtc gtttggtttg acgtcggcct ttgcgatcgc cgtgtcgttg
      181 ctggtgtcgt ttacgttaac gccgattctg gcggcgcgtc tgatcaaacg cagcgacgat
      241 gcgaaggaac gcccgctcga gaaacacacc gaaccagcgg atcacggctc gaaacagtcg
      301 cgctggtatc gtccgatcga tcgcacgtac acgagcttgt tgacgtggtc gatgaagcat
      361 cgctgggccg tcgtggtggc ttgcgtggtc gtgattctca gcatcgttcc gttgttcatg
      421 tttgtcggca agaacttcct gccggtcgac gaccagtcgc agtttgaagt tcaggtgcgt
      481 gctccggaag gttacacgct cgcggccacg tcgacattgg ccgagcgcat cgcggttgat
      541 atgcgaaagc ttcccggcgt gacggacacg ctgacgacga tcggtggcgg acagcaggaa
      601 caggtcaacc tcgcgtcgat ttacgtgaaa ctccatccaa tcgaggagcg cgacgtgacg
      661 caagagcaac tgatggtgcg cgcgcgtaac gaggtcctcg cgaagtatca gcaacagtat
      721 ccgggacaac tgcgcacgag cgtgcagcag gtcgccgcga tctccggcgg cggtttccgc
      781 aacgcggata ttcagtacgt tatcggtgga ccagacctgc agaagctcac cgaatactcg
      841 gacaagctgc tggagaagat gaagactatt cccgacgtcg tcgacgccga ctcgacgctc
      901 atcagcggta agccggagtt gcgtgtcgtg atcgatcgcg cgcgtgcggc ggatctcggt
      961 gtgcgagtcg gcgatatcgc gcaagcgctc aactcgctcg tcgcgggtca gaaggtttcg
     1021 acgttcaacg ccggcacgga ccaatacgac gttcgtgttc gctcggtggg tcagtaccgc
     1081 acgagtgctg aaggactgca gcgaatgatc gtgtcgtcga cgaaagtcgg ctgggtcagt
     1141 ctcgacaacc tcgtgcgcgt cgaggagggc actgggccag ccgcgatcga tcgcttgaac
     1201 cggcaacgcc aggtgatgtt gctcggcaac attcgtccgg gcggttcgca ggcggcggtc
     1261 atcgatcaga tgaaccagtt tgcgaaagag attcagatcg atccggctta ttcgaccgga
     1321 ctcgcgggac gttcgaagga gctcggccgc gccgggtact acttcggttt ggcgttcctg
     1381 ttgtcgttcg tcttcatgta catggtgctc gcggcgcagt ttgagtcgtt cattcatccg
     1441 gtgacgattt tgctgacgct gccactggcg attccgttcg gcattctttc actactcatg
     1501 acgggacaga ccgtgaacat cttttcgggt ctcggtctgc tgttgctgtt cggcgtggtg
     1561 aagaagaacg cgattctgca aatcgatcat acgaatcagt tgcgtgaaag aggtatggaa
     1621 aggtttgaag caattattcg cgcgaaccgc gatcgtttgc gtccgatttt aatgactact
     1681 atcgcgctcg tcgcgggcat gttgccgttg acgctcgcga ctggcccagg cgccggtacg
     1741 aatagatcga tcggcgtgct ggttgtcg
//
LOCUS       DASWTX010001188         1774 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_126455, whole genome shotgun sequence.
ACCESSION   DASWTX010001188 DASWTX010000000
VERSION     DASWTX010001188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1774)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1774
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126455"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..196)
                     /locus_tag="VGD38_18110"
     CDS             complement(<1..196)
                     /locus_tag="VGD38_18110"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY0730006.1"
                     /translation="MRVVPISVPTPFYVGPVNVYLIAEDPVTIIDTGPKTKEAAEALR
                     AGLRAAGFLLSDIRRIVLTHA"
     gene            complement(215..>1774)
                     /locus_tag="VGD38_18115"
     CDS             complement(215..>1774)
                     /locus_tag="VGD38_18115"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEY0730007.1"
                     /translation="LGLIGANIPEEFGGLGLDQTSGALIGENIGRSASFATTLGAESG
                     IGLLPIVYCATEAAKQKYLAKIASGELITAYALTEAGSGSDAMAAKATARLSEDGKEY
                     ILNGEKMWITNGGFADIFIVFAKVDGDKFSAFIVERPPGLTSGAEEHKMGIKGSSTTA
                     LVLSDVRTPVENLLGEVGKGHKIAFNVLNIGRFKLGAMCAGGMKLMIHESVRYANERH
                     QFGKPISSFGAIKMKLAEQAIRTWVGESMIYRTLGMIEAGVGAVDPKDMDARLRAIEE
                     YAAECSIIKVALSEYCDFVVDEMVQIYGGYGYSADYPAERAYRDSRINRIFEGTNEIN
                     RMLIPGRLMKSALSGNLALLPAAQALMDEVLSPQLPSLDDDDTLLAAEEKLTQNAKKV
                     ALMTLGTAAQKYMMKLGDQQEILMGIADIIMDTYAMETAILRARKLAESQGENAAARY
                     LDMTRVFCNDAVGRIELRAKNTLAGMSEGDELRTLLAALRRFTKQQPMNTIVARQRIA
                     DDMIAANKYIY"
BASE COUNT          318 a          549 c          534 g          373 t
ORIGIN      
        1 gtgcgtgcgt gagaacgatg cggcggatgt cggaaagaag aaaccccgca gcgcgcaggc
       61 cggcgcgcaa ggcttcggcc gcctctttcg tcttcgggcc ggtgtcgatg atcgtcaccg
      121 gatcttcagc gatcaggtag acattgaccg gcccgacgta gaacggcgtt ggcactgaaa
      181 taggaacgac gcgcaacgtg tgcttctcgt gcctttaata gatgtacttg ttggccgcga
      241 tcatgtcgtc cgcaatgcgc tggcgagcga cgatcgtgtt catcggctgt tgcttggtga
      301 aacgacgcag cgccgcgagc aacgtgcgca gttcatcacc ttccgacatg ccggccagcg
      361 tgttcttcgc acgcaattca atgcgcccga ccgcgtcgtt gcagaagacg cgcgtcatgt
      421 cgagatagcg cgccgccgcg ttttcgccct gcgactcggc cagcttgcgc gcgcgcagga
      481 tggctgtctc catcgcgtag gtgtccatga tgatgtcggc aatgcccatc aggatctcct
      541 gctggtcgcc gagtttcatc atgtacttct gcgcggcggt gccgagcgtc atcaacgcga
      601 ccttcttcgc gttctgcgtc aacttctctt cagccgcgag cagcgtgtcg tcgtcatcga
      661 gactcggcaa ctgcggcgag agcacttcgt ccatcaacgc ctgcgccgcg ggaagcagtg
      721 cgaggttgcc gctgagcgcg ctcttcatca agcggccggg aatcaacatg cggttgatct
      781 cgttggtgcc ttcgaagatg cggttgatgc gcgagtcgcg ataagcgcgc tcggcggggt
      841 agtcggcgga gtaaccatag ccgccgtaaa tctggaccat ctcgtcgacg acgaaatcgc
      901 agtactcgga aagcgcgacc ttgatgatcg aacactcggc cgcgtattcc tcgatcgcgc
      961 gcaaacgtgc gtccatgtct ttcggatcga ccgcgccgac gccggcttcg atcatgccga
     1021 gcgtgcggta gatcatcgac tcgccgaccc aggtgcgaat cgcctgctcc gcgagcttca
     1081 tcttgatcgc gccgaacgaa gagatcggtt tgccaaactg atgacgctcg tttgcgtaac
     1141 gcaccgactc gtggatcatc aacttcatgc cgcccgcgca catggcgccc agcttgaagc
     1201 ggccgatgtt cagcacgttg aaagcgatct tgtgtccctt gccgacttcg ccgagcaggt
     1261 tttcaaccgg cgtgcgcacg tcggaaagca cgagcgcggt tgtgctcgag cctttgatac
     1321 ccatcttgtg ctcttcggcg ccggacgtga gacccggtgg gcgttcgacg ataaacgccg
     1381 agaacttgtc gccgtcgact ttcgcaaaca cgatgaagat gtcggcgaaa ccgccgttgg
     1441 tgatccacat cttctcgccg ttgagaatgt attccttgcc gtcttcgctc agacgcgccg
     1501 ttgctttcgc cgccatcgcg tccgaacccg agccggcttc agtcagcgcg tacgccgtga
     1561 tgagttcgcc cgacgcgatc ttcgccaggt acttttgctt cgcggcttcg gtcgcacagt
     1621 aaacgatcgg caacaagccg atgccgcttt ccgcgccgag cgtggtcgcg aacgaagcag
     1681 agcgtccgat gttctcgccg atgagcgcgc cgctcgtttg atcgagaccg agcccgccga
     1741 actcttcggg aatgttcgcg ccgatgagtc cgag
//
LOCUS       DASWTX010001189         2608 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_209565, whole genome shotgun sequence.
ACCESSION   DASWTX010001189 DASWTX010000000
VERSION     DASWTX010001189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2608
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209565"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1714
                     /locus_tag="VGD38_18120"
     CDS             <1..1714
                     /locus_tag="VGD38_18120"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0730008.1"
                     /translation="YGPSGSGVFACRYSPLMDDDEKIAGGIAVVSDISARRQAEDAAT
                     TAYRQLSFHVESSPLAVIEWDSDFRVSRWSESAERLFGWKAEEVIGKHVNEWQFVFAD
                     DVDAVALVTNRQREGVEVQGVQRNRNYTRAGSVLFCEWYNSVLHDDRGNLVSVLSLVL
                     DVTAREKGEEERAALLIRERDARQHAEEADRLKDEFLATLSHELRTPLTSILGWASMI
                     RNGEVEGSNATRAIETIERNARSQARLIDDLLDVSRIITGNLRLDLHPLNLAPIVEAA
                     IDALRPTADVKGIQLKTEQLSSECLVKGDPNRLRQVIWNLLSNAIKFTQRGGVVMIDL
                     RCVGGTVHLRVADTGEGISAEFLPYVFDRFRQAEGSISRKQGGLGLGLAVVRHLVELH
                     GGSIGAESAGLGQGSVFTVELPLAEERRDPARAEERRREVERRRSKRGSVRLDGVHVM
                     LVEDDDDSRKLLGTMLKRYGARVTPTKSAAEALSVFSSDVPDILISDIGMPDQDGYEF
                     IQKLRALPPDQGGQTPAIALTGYASRKDRERALAAGYQQHIAKPIEQSEMITAIAALV
                     GRGD"
     gene            1718..>2608
                     /locus_tag="VGD38_18125"
     CDS             1718..>2608
                     /locus_tag="VGD38_18125"
                     /inference="COORDINATES: protein motif:HMM:NF013123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HEY0730009.1"
                     /translation="MRRNVQTIVVLLLLLVPVFAQQADPSLLTVDSIFTYRTRSLGPV
                     RWQEDGSGYLALEPSPNKRNALDIVRYDAATGNRTVKVSAEKLVPTGANDPLAIEEFA
                     MTGDEQKLLIFTNSQRVWRSNTRGDYWVVDLKSNTLRKLGGPDAKPSTLMFAKFSPDG
                     QRAAYVRENNVYVENLFGDNKVTQLTTDGTRYLVNGTFDWVYEEELFCRDGFRWSPDS
                     KNIAYWQLNSEGVKEMQMIDNTSGLYPTVTTFPYPKAGETNSAARVGVVSADGGPTRW
                     FDIPGDPRNNYLPRMEWAGAN"
BASE COUNT          547 a          739 c          827 g          495 t
ORIGIN      
        1 gtatggaccg tcgggaagcg gtgtgttcgc gtgtcgttac tcgcccttga tggacgacga
       61 cgaaaagatc gccggcggca tcgccgtcgt tagcgacatc agcgcgcgac ggcaagcgga
      121 agacgcggcg accacggcct accggcagtt gtcgtttcac gtcgagagct cgccactcgc
      181 ggtcatcgaa tgggacagcg attttcgcgt ctcgcgttgg tccgaatccg ccgaacgttt
      241 gtttggctgg aaggcggaag aagtgatcgg caagcacgtc aacgagtggc agtttgtttt
      301 tgccgacgac gtggacgcgg ttgcattggt gacgaatcgg cagcgcgaag gcgtcgaggt
      361 tcagggcgtg caacgcaatc gaaattacac gcgcgcgggt tcggtgcttt tttgcgagtg
      421 gtacaactcg gtgctgcacg acgatcgcgg caacctcgtt tcggtgctgt cgctcgtact
      481 cgacgtgacc gcacgcgaaa agggagaaga agaacgcgcc gcattactca ttcgcgagcg
      541 cgacgcgcgc cagcacgccg aagaagccga ccgtttgaaa gacgaattcc tggcaacgct
      601 ttcgcacgaa ctgcgcacgc cgttgacgtc gattctcggt tgggcgtcga tgattcgcaa
      661 cggcgaagtc gaaggatcga acgccacgcg cgcgatcgaa accatcgaac gaaacgcgcg
      721 ttcgcaggcg cggctgatcg acgacctgct cgacgtttcg cgcatcatca cgggcaatct
      781 tcgtctcgat ctgcacccgc tgaacctggc gccgatcgtc gaagctgcga tcgacgcgct
      841 ccggcccacg gccgatgtaa aaggcattca actcaaaacc gagcagttga gtagcgagtg
      901 tttggtgaag ggcgatccga accgtttgcg gcaggtgatc tggaacttgc tttcgaacgc
      961 gatcaagttc acgcaacgcg gcggtgtggt gatgatcgat ctgcgctgcg tcggcgggac
     1021 cgtgcatcta agggttgccg acaccggtga aggaatctcg gccgagttcc tgccctacgt
     1081 gttcgatcgt ttccggcagg cggaaggctc gatctcgcgg aagcagggcg gactcggatt
     1141 gggtctcgcg gtcgtgcgtc acctggttga gttgcacggc ggcagcatcg gcgcggaaag
     1201 cgcgggctta ggccagggat cggtgttcac ggttgagttg ccgctcgccg aagagcggcg
     1261 cgatccggcg cgtgcggaag aacggcggcg agaagtcgaa cgtcgccgca gcaaacgcgg
     1321 atcggtacgg ctcgacggcg tgcacgtgat gttggttgaa gacgacgacg attcgcgcaa
     1381 gctgctcggc acgatgttga agcgttacgg cgcgcgagtg acgccaacga agtcggcggc
     1441 cgaagcgttg agcgtgtttt cgagcgacgt gcccgatatt ttgatcagcg acatcggcat
     1501 gcccgatcag gacggctacg aatttattca aaagctgcgt gcgctgccgc cggaccaggg
     1561 cggccagacg ccggcgattg cgttgacggg ttatgcttcg cggaaggacc gcgagcgtgc
     1621 gctcgcagcg ggttaccagc agcacatcgc gaaaccgatc gaacagtcag agatgattac
     1681 cgcgattgcg gcgttagtgg ggagagggga ttgatacgtg agacgtaacg ttcaaacaat
     1741 cgttgttcta cttctgttac tggttcctgt ttttgcacag caggcagatc cgtcgctgct
     1801 gacggttgat tcgattttta cataccgcac gcgttcgctc ggtccggtgc gttggcagga
     1861 agacggcagc ggctatctcg cgctcgaacc gtcgcccaac aaacgaaatg cgctcgacat
     1921 cgttcgctac gacgccgcga ccggcaatcg caccgtgaaa gtgtcggcgg aaaaactggt
     1981 tccgacaggc gcgaacgacc cgctggcaat cgaagagttc gccatgaccg gcgacgaaca
     2041 gaagctgctc atcttcacca actcacaacg cgtttggcgc agcaacacac gtggcgatta
     2101 ctgggttgtc gatctgaaga gcaacacact gcgcaaactc ggcggtcccg atgcgaaacc
     2161 gtcaacactg atgttcgcga agttttctcc cgacggccag cgcgccgcgt acgtgcgtga
     2221 aaacaacgtc tacgtcgaga atcttttcgg cgataacaag gtcacacagc tcacgaccga
     2281 cggcacgcgc tatctcgtga acggcacctt cgattgggtc tacgaagaag agctcttctg
     2341 ccgcgacggt tttcgctgga gtccggacag caaaaacatc gcatactggc agctcaactc
     2401 ggaaggcgtg aaagagatgc agatgatcga caacacgagc ggtctgtatc ccaccgtcac
     2461 gacctttcct tatccgaaag cgggcgaaac taactctgcc gcgcgcgtcg gcgtcgtcag
     2521 cgctgacggt ggtccaacac gctggttcga catccccggc gatccgcgca acaactatct
     2581 gccgcgcatg gaatgggccg gcgcgaat
//
LOCUS       DASWTX010001190         2545 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_144424, whole genome shotgun sequence.
ACCESSION   DASWTX010001190 DASWTX010000000
VERSION     DASWTX010001190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2545
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144424"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..945
                     /locus_tag="VGD38_18130"
     CDS             <1..945
                     /locus_tag="VGD38_18130"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEY0730010.1"
                     /translation="QLQAAATELENVRASVKDVALRNVATLMLLGIYLEDGNYGRSQS
                     LLEETFQTRAAQKDESLRTYFAAAGQTVNGIRTHLARYRSFGLNPSDTNLPVEATTDL
                     ERVRGLLERVIAQANEISREPGRTYESLALLEDVLSMRTSLARNNEDRAKWQTEFLLA
                     REKMAASQIQVASLGRSSALDAVTSRIPNPFATPKSGATQSPAATAPTATPSPQPTTA
                     TTAEPQLISTGSLSGRETKRVTPNYPPAAKNHNVTGTVRVFAIVDENGKVWVTNSEGP
                     MLLRTAAEEAARAWTFPPSVVDNRPVRLAGYLDFEFKL"
     gene            1076..1552
                     /locus_tag="VGD38_18135"
     CDS             1076..1552
                     /locus_tag="VGD38_18135"
                     /inference="COORDINATES: protein motif:HMM:TIGR00738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEY0730011.1"
                     /translation="MKISAQEEYGLRCLLQLARAETIGESLTLSQLANLEGISTANAG
                     KLLWILSKAGLVQSTRGIKGGYSLARPASQIRLNQVIRVLEGEPAESHCKSYAGVLDA
                     CVHTGDCGIRPVIIELHQIVDNALADITLSQLLGSEANVDAALHQIQGVRPKDNRV"
     gene            1556..>2545
                     /gene="sufB"
                     /locus_tag="VGD38_18140"
     CDS             1556..>2545
                     /gene="sufB"
                     /locus_tag="VGD38_18140"
                     /inference="COORDINATES: protein motif:HMM:TIGR01980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HEY0730012.1"
                     /translation="MSTAELLSKQEYKYGFVTDIESDVIPRGLTEDTIRLIVEKKNEP
                     EWMLEFRLKAFRHWLTMTEPKHWPNISYPKIDYQDIIYYSAPKQKPTKASLDEVDPEL
                     LRTFEKLGIPLTEQKQLAGVAVDAVFDSVSVATTYKEKLKKHGVIFCSFTEAIRDYPE
                     LVKKYLGSVVPTNDNYFAALNSAVFSDGSFCFIPKGVRCPMELSTYFRINNADSGQFE
                     RTLIVAEEGSYVSYLEGCTAPKFDRNQLHAAVVELVALDDAQIKYSTVQNWYAGDEEG
                     RGGIYNFVTKRGKCAGRNSKISWTQVETGSAITWKYPSCILQGDNSIGEFYSVA"
BASE COUNT          616 a          712 c          711 g          506 t
ORIGIN      
        1 cagttacagg ctgccgcgac agagttggag aacgtgcgcg cgtcggtgaa ggacgtagcg
       61 ctgcgcaatg tagcgacgtt gatgttgctg gggatttacc tggaagacgg taactacgga
      121 cgctctcaat cactactcga agagactttt caaacacgcg ctgcgcagaa agacgaatcg
      181 cttcgcacat acttcgccgc agccggccag accgtaaacg gcatcagaac acatctcgct
      241 cgttatcgca gtttcggtct gaatccgagc gacacgaacc ttcccgtcga agcgacaacg
      301 gatctcgaac gcgtgcgcgg cctattggaa cgcgtcatcg cgcaagccaa cgagatttcc
      361 agagaaccag gacgtactta cgaatcactc gcattgcttg aagacgtgct cagcatgcgc
      421 acgtcgctcg cgcgcaataa tgaggatcgc gcgaagtggc agacggagtt tttactagcg
      481 cgtgagaaga tggccgcgtc gcagattcag gtcgcgtcac tcggccgctc ctcggccctc
      541 gacgccgtca cgtccagaat cccaaacccg tttgcaactc cgaaatccgg cgcgacacaa
      601 agccccgcgg ccactgcgcc aacggcgacg cccagccctc aaccaacaac cgcaaccact
      661 gctgagccgc aactcatcag caccggctct ttgagcggac gcgaaaccaa acgcgttacg
      721 cccaattatc cgcccgcagc caagaaccac aacgtcaccg gcaccgtgcg cgtgtttgcc
      781 atcgtcgacg aaaacggcaa ggtttgggtg accaactcag aaggcccgat gctgctgcgg
      841 acagcggctg aagaggccgc tcgcgcctgg acgttcccgc cgtccgtcgt cgacaacagg
      901 cccgtcagac tcgccgggta tctcgatttc gaattcaagc tgtagtcaaa agcgcccaag
      961 gctgaggccc ttcggtaagg gataagagtg tccgcgccaa tggcgctgac taacagtctt
     1021 taatcttgac ttaaaagtaa ggtttaggtt aagctgcccg cggttaacaa gttagatgaa
     1081 gatctcggct caagaagaat acggtttacg ctgcctgctc cagttggcgc gtgctgaaac
     1141 catcggcgaa tcgctgacgc tttcacaact cgccaacctc gaaggaatct ccaccgcaaa
     1201 tgccggaaaa ctactgtgga tcctgagcaa ggccggattg gttcagtcga cgcgcggtat
     1261 caaaggcggc tattcgctcg ctcgcccggc gtcgcagatt cgcctcaacc aggtgattcg
     1321 agttttggaa ggcgaaccag ccgagtcgca ttgcaagagt tacgcgggag tgctcgacgc
     1381 atgtgtgcat accggcgact gcggcattcg cccggtaatt atcgagctgc accagatcgt
     1441 cgataacgca ctcgccgaca tcacgctgtc gcagttgttg ggcagcgaag caaacgtcga
     1501 cgcggcgctg catcagattc aaggggtcag accgaaggac aatcgagttt agaagatgag
     1561 tacagcagaa cttttaagca aacaggaata taaatacggc ttcgttacgg atatcgagtc
     1621 ggatgtgatc ccgcgcggtt tgacggaaga cactattcgt ctgatcgtcg agaagaagaa
     1681 cgaacccgaa tggatgctgg agtttcgtct gaaggctttt cgtcactggt tgacgatgac
     1741 cgaaccgaag cactggccca acatctctta tccgaagatc gattaccagg acatcattta
     1801 ctacagcgcg ccgaaacaga agccgactaa agcgagtctc gacgaagtcg atcccgagct
     1861 gctgcggacg tttgaaaaac tcggcattcc gttaacggag cagaagcagt tggccggcgt
     1921 cgcagttgat gccgtgttcg actcggtttc cgtcgcgacg acgtacaaag aaaagctgaa
     1981 gaagcacggc gtgatcttct gttcgtttac cgaagcgatc agagactatc cggagctcgt
     2041 gaagaagtat ctcggttcgg tcgtgccgac caacgacaac tacttcgcgg cgctgaacag
     2101 cgcggtcttc tcggatggca gtttctgttt catcccgaaa ggcgttcgct gtccgatgga
     2161 gctttcgact tacttccgca tcaacaacgc ggactccgga cagtttgagc gcacgctgat
     2221 cgtcgctgaa gaaggttcgt acgtttcgta tctcgaaggc tgcaccgcgc cgaagttcga
     2281 tcgcaaccaa ctgcacgcag cggtggttga actggtcgca ctcgacgacg cgcagatcaa
     2341 gtattcaacg gtgcagaact ggtacgcggg cgatgaagaa ggccgtggcg gtatttacaa
     2401 cttcgtcacg aaacgcggca agtgcgctgg aagaaattca aagatttcgt ggacgcaggt
     2461 tgagactggt tcggcgatca cgtggaagta tccatcgtgc attctgcaag gtgacaactc
     2521 gatcggcgag ttttattcag tagcg
//
LOCUS       DASWTX010001191         3173 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_209594, whole genome shotgun sequence.
ACCESSION   DASWTX010001191 DASWTX010000000
VERSION     DASWTX010001191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3173)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3173)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3173
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209594"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>3173
                     /locus_tag="VGD38_18145"
     CDS             <1..>3173
                     /locus_tag="VGD38_18145"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEY0730013.1"
                     /translation="IAAGVPKGTPVAIFAEDSIEVITAIIGTLKAGCIFVPLDLKLPA
                     NRLTSMLSQVSPEWFLTESKFLTTIEPHAASARNVVCLDDFEHADTSQPQVTYDPDDP
                     CYVYFTSGSTGQPKGITGRLKGIDHFIRWEIETLKLDDEVRVSQLLPITFDGSLRDIF
                     VPLCAGGTVCVPPERETILDTSKLVRWLDDERVNVIHCVPSLFRSIINEDLSAVQFSS
                     LRYILMAGEPLLPSDVGRWMDVYGQQTQLVNLYGTSETTMAKFAYFVQPSDRYRKTIP
                     VGKPIKGAAALVVDDNGKPCAPGMIGEIYIRTPYRSHGYYNQPELTAQSFIQNPFNDD
                     PSHIVYKTGDYGRVLEDGNFEYLGRRDNQVKVRGVRVELAEIENAIRQHAVVKDVAVI
                     DREDRSGNNYLCSYVVVQEETGLEPLKQSLTENLPDYLIPSAFVIMETLPRTITGKID
                     RRALPAPGQTRAGLASTFVAPINAIEEMLAGIWAEVLGLPRVGTRDNFFELGGHSLLA
                     TQVASRVRSVFQIELPLRDLFKAPTVAGLAATIETAIRQGENVATPPIVAASRDRDLP
                     LSFAQQRLWFLHQLEPELTLYNLSTTVRLIGELDHAALEYAFATLVRRHEALRTSFTY
                     RGGMPRQVVSPASDFQLDVQDVSTLPQDQRLPEAHRIATHEAQQSFDLERGMLLRVKL
                     LRLSEEEHVLVLVMHHIVSDGWSMGVLVKELVELYGASKDGRETVLGDLPIQYADFAV
                     WQREWLSGPVLDAQLKYWREQLRGAPPLLELPTDRPRPPVQTHNGAAAYFGISPELTA
                     RIKELSRHHGVTLFMTLLAAFDVLLMRHTGQEDIVVGSDIANRNRAETENLIGFFVNM
                     LVMRTDLSGNPTFVELLERVREVALEAYAHQDMPFEKLVEELQPERSLQYSPLFQVVL
                     VLQNAPTAAAELPSLEVLPVRHETRSAKFDLTFVLEDSATGLHGSLEYNSDLFEPESI
                     RRLLDSFAVLLEAVAANPKQRLSELSLLSEEQSRWLIADSNSTRVAYPRDLTLDQLFA
                     RQVESTPDAIALVCSGQQLTYRELNER"
BASE COUNT          648 a          960 c          908 g          657 t
ORIGIN      
        1 tcatcgctgc cggcgtgccg aagggaacgc ctgtcgcgat cttcgccgag gattccatcg
       61 aggtcatcac cgccatcatc ggcacactca aagcaggttg tatcttcgtt ccactcgatc
      121 tgaaactgcc tgcaaaccgg ctcacgtcga tgctctcgca agtgtcgccg gaatggtttc
      181 tcacagagtc aaaattcctg acgacaatcg agcctcacgc ggcgtccgca cgcaacgttg
      241 tctgcctcga cgacttcgaa cacgccgata cgtcgcagcc gcaggttact tacgatcccg
      301 acgatccctg ctacgtttat ttcacgtcgg gttcgactgg tcagcccaaa ggaatcaccg
      361 gacggctcaa aggcatagac catttcattc gttgggagat cgagacgctc aagctcgacg
      421 acgaagtgcg cgtcagccaa ctgctgccga tcactttcga tggttcactc agggatatct
      481 ttgtgccgtt gtgcgcgggc ggaaccgtgt gcgtaccgcc ggagcgtgaa acgattctcg
      541 acacgagcaa gctggtccgt tggctcgacg acgagcgcgt caacgtcatc cactgtgtgc
      601 cttcgctctt tcgctcgatc atcaacgagg acctaagcgc cgttcaattc tcatcgctgc
      661 gctacatcct gatggccggc gagccgttgc tgccgtcgga tgtgggccgt tggatggacg
      721 tttacgggca gcagactcaa ctcgtcaatc tctacggcac gtcggagacg acgatggcga
      781 agttcgcgta tttcgttcag ccttcagatc gctatcgaaa gacgattccc gtcggcaagc
      841 ccatcaaggg tgcggccgcg ctcgtggtcg acgacaacgg caaaccgtgc gcgccgggaa
      901 tgatcggcga gatctacatt cgcacgcctt atcgatcgca cggctactac aaccagccag
      961 aactcaccgc gcagtctttc atccagaacc ctttcaacga cgacccgtcc cacatcgttt
     1021 acaagaccgg cgactacggg cgcgttttgg aagatggcaa cttcgagtat ctcggacggc
     1081 gcgacaacca ggtgaaggtg cgcggagtca gagtcgagct cgcggagatc gagaacgcca
     1141 ttcgacagca cgccgtcgtc aaagacgtcg ccgtgatcga tcgcgaagat cgcagcggca
     1201 acaactacct gtgctcttat gtcgtcgtgc aagaggagac tggactcgaa cctctcaaac
     1261 agagcctcac ggaaaatttg ccggactacc tgattccgtc agcgttcgtg atcatggaga
     1321 ctctgccccg cacgatcacg ggcaagatcg atcgccgtgc gctgcccgct cccggacaaa
     1381 cgcgcgccgg actcgcatcg actttcgtcg cgcccataaa tgcgatcgaa gaaatgctcg
     1441 cgggcatctg ggccgaagtt ctcggcctcc cacgagtcgg cacgcgtgac aacttcttcg
     1501 aactcggcgg ccactctttg ctcgccactc aggttgcgtc acgcgtgcgc agtgtgtttc
     1561 agatcgaatt acctctgcgc gatcttttca aagcgccgac cgtggccgga ctggcggcaa
     1621 ctatcgaaac agcgatccgt cagggcgaaa acgtggccac accgccgatc gttgccgcgt
     1681 cgcgcgaccg tgacttgccg ctttcgttcg cgcagcagcg gctctggttc ctgcaccaac
     1741 tggaacccga actcacgctt tacaacttat ctaccaccgt gcgtttgatc ggcgagttgg
     1801 accacgcggc gctcgaatat gctttcgcca cactcgtgcg ccgtcacgaa gccctgcgca
     1861 cgtccttcac ctaccgcggc ggcatgccgc ggcaggtagt ctctcctgct tccgacttcc
     1921 agctcgacgt gcaggacgtc tccacgctgc cgcaagacca gcgattaccc gaggcgcatc
     1981 gcatcgctac tcacgaagcg cagcagtcat tcgatctcga acgcgggatg ctgctgcgag
     2041 taaagctgct tcgattgagt gaagaggagc atgtgctggt gctggtgatg caccacatcg
     2101 tctccgacgg gtggtccatg ggcgtgctgg tgaaagagtt ggtcgaactc tacggcgcga
     2161 gcaaagacgg cagagagacg gtgctcggag atttaccgat tcagtatgcg gacttcgcgg
     2221 tatggcaaag ggaatggctc agtggaccag tgctcgatgc gcaactgaaa tactggcgag
     2281 aacagttgcg cggggcgccg ccgttattgg agttgccgac cgacagaccg cgtccgcccg
     2341 ttcaaactca taacggcgct gcggcttact ttggtatttc gcctgaactg actgcgcgca
     2401 tcaaagagtt gtcgcgccat cacggcgtca cactgttcat gacgttgctc gctgcgtttg
     2461 atgtcctgct catgcgtcac acgggccagg aggacatcgt cgtcggttcc gatatcgcca
     2521 accgcaaccg cgcggaaacg gaaaacctca tcggcttctt cgtcaacatg ctcgtgatgc
     2581 ggactgacct ctcgggcaat ccgacgttcg tcgaactgct ggagcgcgtt cgcgaagtcg
     2641 cgctcgaagc ttacgcgcat caggacatgc cgtttgagaa gctggttgaa gagttacagc
     2701 ccgaacgcag tcttcagtac tcgccgttgt tccaggtagt gctcgtgttg cagaacgcgc
     2761 cgacggccgc tgcggagttg ccgtcgttgg aagtgctgcc ggtcagacac gaaacacgga
     2821 gtgcgaagtt tgacctcacc tttgtgctgg aagacagcgc gaccggactg cacggatcgc
     2881 tcgagtacaa cagcgacttg tttgaacccg aaagtatcag gcgtctgctg gacagtttcg
     2941 cggtgctgct cgaagcggtt gctgcgaatc cgaagcagcg tctttcggag ttgtcactgc
     3001 tgtctgagga gcagagtcgt tggttgatcg cggacagcaa tagcacacgc gtcgcttacc
     3061 cacgcgatct cacgttggac caactgttcg cgcggcaggt cgaaagtacg cctgacgcga
     3121 ttgcgctcgt ttgctccggg cagcagctta cgtatcgcga attgaacgag cgt
//
LOCUS       DASWTX010001192         2433 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_426875, whole genome shotgun sequence.
ACCESSION   DASWTX010001192 DASWTX010000000
VERSION     DASWTX010001192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2433)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2433)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2433
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_426875"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1068)
                     /locus_tag="VGD38_18150"
     CDS             complement(<1..1068)
                     /locus_tag="VGD38_18150"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEY0730014.1"
                     /translation="MLYFVDPFIGDWDGMDYTMLSIAGYPSSMALGRNLFIFSNHFLY
                     EIGRSLFGVQPESAYLIFKYAVVVQAPLAIVACWILARDISGSLYAATIASLLITFSP
                     VFVLYGGQVMTDVPSVLILATALVVHLRGMKQKKLWMVLLGAGLMGLGVNLRETIGFY
                     LPWLVFAPFMFGWKFEKRDVAYIVASCALFLVLAFGWFAYWFISDAHYRGIWHGWRES
                     MREESSRHPVALVNLRPYLLYYFISAPLVFLTILYAPVLEWRKRRLSPMLLLWLAGFF
                     ANVLLFFNYSTTVNWRYFLTGLPAIVPLGAFWMLRIAEFQLGNIRRAFVACIGVIVLM
                     AVVLFIYMRPISFEFIERRAMS"
     gene            complement(1130..1978)
                     /locus_tag="VGD38_18155"
     CDS             complement(1130..1978)
                     /locus_tag="VGD38_18155"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0730015.1"
                     /translation="MEKRRILIVDNNDELRLLLEKVLGQLGHEVVVTGERGKALRRDD
                     LDSFDLIISDLSEAEVNGEPISEHHRKHLVTPLSTHGASPEIIKAFKMGAANYLRSPY
                     DREEMREIVEKTLAYKLRYVDDPKVLSHVHEKIEFELPSDVALMNGVLEYLQERVAKL
                     GLIKPERSNLFVALDEAFVNAVKHGNKNDPTKLVRITAELTPQEASFTVEDEGEGFDI
                     NQIPDPCDPANLFRTSGRGVLLIYNIMDEVEYNAQGNRVKMVKRPEVPGQSSTRCSNN
                     PDDKHA"
     gene            2143..>2433
                     /locus_tag="VGD38_18160"
     CDS             2143..>2433
                     /locus_tag="VGD38_18160"
                     /inference="COORDINATES: protein motif:HMM:NF015251.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730016.1"
                     /translation="MAKQGKLQTFLEYAAAKSVLSTLGHLPAPAAMAIGKTMGKLAYF
                     LASDLRKTGATNLRLAFPEKTEAERDQLLRECFDNLGRQLGFFSQFATRSLEE"
BASE COUNT          597 a          720 c          639 g          477 t
ORIGIN      
        1 gctcatcgcg cgccgttcga taaattcaaa actgatcggc cgcatgtaaa taaacaggac
       61 cacggccatc aacacgatga caccgatgca cgccacgaat gcgcgtcgaa tgtttcccaa
      121 ctgaaactcc gcaattcgca gcatccaaaa cgcgccgagc ggcacaatcg ccggcaagcc
      181 cgtcaggaag taacgccaat taaccgtcgt gctgtagtta aagaaaagaa gtacgttcgc
      241 aaagaacccc gccagccaaa gcaacagcat cggcgacagg cggcgcttgc gccactccag
      301 caccggcgca tacaggatcg tcaaaaacac gagcggcgca ctgatgaagt aatacaaaag
      361 gtacggacga agattcacga gcgcgaccgg atgccgcgac gactcctcac gcatcgattc
      421 acgccaacca tgccagatcc ctcggtaatg agcgtcgctg atgaaccaat acgcaaacca
      481 accgaacgcc aacaccagaa acaacgcgca cgacgcaacg atgtacgcga cgtcgcgctt
      541 ttcaaacttc cacccaaaca tgaacggcgc gaacacgagc cacggcaaat aaaacccgat
      601 cgtctcgcgc aagttgacgc cgagtcccat caaacccgcg cccagcaaaa ccatccacag
      661 cttcttttgc ttcatgccgc gcagatggac caccagcgcc gttgccaata tcagcaccga
      721 cggcacgtca gtcatcacct gtccaccgta aagcacaaac accggcgaga acgtgatcaa
      781 tagcgacgcg atcgtcgccg cgtacaacga gccactgatg tcacgcgcca gaatccagca
      841 cgcgacgatc gcgagcggcg cctggaccac cactgcatac ttgaagatca aatacgcact
      901 ctccggctgc acgccgaaaa gactgcggcc gatctcgtac aaaaagtgat tactgaaaat
      961 gaagagattg cggcccaacg ccatcgacga cggataaccc gcgatcgaca gcatcgtgta
     1021 gtccatgccg tcccaatcgc cgataaacgg atcgacaaag tagagcacga gcgcgactgc
     1081 gatcagcgcg ggcggagccc accagcgcca cgcgggccaa aaagaattgt caggcgtgtt
     1141 tgtcgtcagg attattggag caacgagttg agctttgacc gggaacttcc ggccgcttaa
     1201 ccatctttac gcgattaccc tgcgcattgt actcaacttc gtccatgatg ttgtagatga
     1261 ggagcacccc gcggcctgac gttcggaaaa gatttgcggg gtcacacgga tcgggaatct
     1321 gattgatgtc gaagccctcg ccctcgtctt cgacagtgaa gctcgcctct tgcggcgtca
     1381 gttcggcagt gatgcgaacg agtttggtgg gatcgttttt gttgccgtgt ttgactgcat
     1441 ttacaaacgc ttcgtcgagt gcgacgaaga gattggaacg ctcgggtttg atcagaccca
     1501 gcttcgcgac gcgttcctgt aaatactcga gcacgccgtt catcagcgcc acgtcgctcg
     1561 gcagttcaaa ctcgatcttc tcgtgcacgt gcgaaagaac tttcgggtcg tcaacgtaac
     1621 gcagtttgta agcgagcgtc ttttctacga tctcgcgcat ctcttcgcgg tcataaggcg
     1681 agcgcagata gttggcggcg cccattttga aagctttgat tatttcggga ctggcgccgt
     1741 gcgtgctgag cggcgtgacg agatgtttgc gatggtgctc gctgatgggt tcgccgttta
     1801 cttcggcttc cgataaatcg ctgatgatca gatcgaaact gtcgaggtcg tcgcggcgca
     1861 gcgctttgcc tcgttcaccg gtgacgacca cttcgtggcc gagctgcccg agaacttttt
     1921 cgagtagcaa acgcaactca tcgttgttgt cgacgatgag aatccggcgt ttttccatcc
     1981 agctccaatc tctgcgaaat gttgaggagg agatcctgcc gcacgcgagc tcaactgctg
     2041 actgtacgaa aacctgtcgc ggcgtgttcg cgaaaatata tcagaaacct ctgggttgat
     2101 gacagtgatg cgtgttctct tgctaaactg ggggtcgccc ccatggcgaa acagggaaag
     2161 ctacaaacct ttctggaata cgcggcggct aagtccgtcc tttcaactct cggccacttg
     2221 cccgcgccag ccgcaatggc gatcgggaag acgatgggca agctcgccta cttcctggca
     2281 tcagatctcc ggaaaacggg cgcgaccaat ctccgtttgg catttcccga gaagaccgaa
     2341 gcggaaagag atcagctact gcgcgagtgt ttcgacaatc tcggccggca actcggtttc
     2401 ttcagccagt ttgccacccg ctcgctcgaa gag
//
LOCUS       DASWTX010001193         1748 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_60177, whole genome shotgun sequence.
ACCESSION   DASWTX010001193 DASWTX010000000
VERSION     DASWTX010001193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60177"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..508)
                     /locus_tag="VGD38_18165"
     CDS             complement(<1..508)
                     /locus_tag="VGD38_18165"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0730017.1"
                     /translation="MESKANILIVDDNPDKLSLLEAALCLAGYRVTTATDGDEALSAI
                     ESYQPDLVITDVMMPRMNGYELAQRIRANPATRFIPVIMQTAASRRAEDLRRASEVGA
                     LGYITDPTDLDLLLARTRTLLEFKAYLDVCEEAAFTDHLTGLANRRRFERQLEREVGR
                     TMRYSHPFS"
     gene            771..1493
                     /locus_tag="VGD38_18170"
     CDS             771..1493
                     /locus_tag="VGD38_18170"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEY0730018.1"
                     /translation="MQMNALQEHKRARDLTTEDRADIIRRLEFGSSLAEDLVMDIARS
                     SVVLDFRRRRFVYRAGEPADCLYAIIHGRIKLCRIEIDTGREAVIDILPEGSLFGESA
                     LYSAAGQRANSAIAYENSRLLRIQVGDFKRGMAEDDRLHDYTFRLIGQRLEHAERRLA
                     DFALNAIPARLDRLLEDFSVRYGVSEPGGVLIDIPLPHREIASIVGSTRESVTVRLNA
                     MRREGTIAFVRRRILLKRPASL"
BASE COUNT          382 a          490 c          488 g          388 t
ORIGIN      
        1 agctgaacgg atggctgtag cgcatggtgc gcccgacctc gcgctcgagc tgcctttcga
       61 accggcgccg gtttgcgagt ccggtcaggt gatcggtgaa agcggcctct tcgcatacat
      121 caaggtatgc cttgaattcg agcagtgtac gcgtgcgagc cagcagcaga tcgaggtccg
      181 tcgggtcggt gatgtaacca agagccccga cttccgacgc ccggcgcaag tcttccgcgc
      241 gtctgctcgc ggcggtttgc atgattaccg ggatgaaccg cgtggcgggg ttggcccgta
      301 ttcgttgggc cagttcgtag ccgttcatcc gcggcatcat cacgtccgta atcaccagat
      361 cgggctggta cgattcgatc gcggaaagag cctcatcgcc gtccgtggcc gtagttacgc
      421 ggtaaccagc aaggcagagg gcggcttcaa gcaggctgag tttatcggga ttatcgtcga
      481 cgatgagaat gtttgctttt gactccataa aacgagaaag ttggaccgtt tattgctctt
      541 gcgcggctat gagcttcatg ctacagtgcc gcaactcggt aaccgtttcg cgccggtact
      601 cgcccaagca tcgtcaatag agtcaaagtc gagagagtac actagcccgg gggtcgcgcg
      661 ggtttcctta caagcgtaga aactaacccg cacaggacca ctttgagtaa acgcaaccac
      721 gctgccaaag gcgatcaatt tagaattctt tactcgacgc accgaaggac atgcagatga
      781 acgccctgca ggaacacaag cgcgccagag atttaacgac tgaagatcgc gctgacataa
      841 tccgtcgcct ggaatttggt tcatcgttag ccgaagacct cgtaatggat atagcccgga
      901 gttcagttgt cctggatttc cgccgccgtc gtttcgttta ccgtgccggt gaaccggctg
      961 attgtcttta tgcgattatc catggtcgaa taaaactgtg tcgtattgaa attgataccg
     1021 gtcgcgaagc cgtaatcgac attcttccag aaggatcctt gttcggtgag tcagctctat
     1081 attctgctgc ggggcaacgg gcaaattcgg caattgccta cgaaaactcg aggctcctcc
     1141 gaatacaggt cggggatttc aaacggggga tggctgagga tgaccggctc catgattaca
     1201 ctttccgcct gatcggtcaa cgccttgaac acgccgaaag acgcctggcc gatttcgccc
     1261 tcaacgccat acccgcccgg ctcgaccgtc tattagagga tttttccgtc cgttacggtg
     1321 tctcggaacc cggaggcgtg ctgatcgata ttcccctccc tcatcgcgaa atcgcctcca
     1381 tcgtgggctc cacgcgcgag agtgtcactg tccgcttgaa cgccatgcgc cgcgaaggta
     1441 cgatcgcctt cgtccgaaga cgaatactgc tgaaaagacc ggcgtcgttg taagcgcgca
     1501 ttagcgtccg agattcatga agtgtccaac ctgcgggaaa ccgaccgagt ggaaagacaa
     1561 cccctttcgt ccattctgtt ctgaacgctg ccaactcgtt gacctcggcc gctgggtcga
     1621 gggtgaatac cgagtgcccg gcgaaccgct gcccagcgag ccgaacgatc agcctgttaa
     1681 cgaaaacgat ttggagaaag atgtctagaa cactcaagcc gcagattatt ctgctggcgc
     1741 ttctgatc
//
LOCUS       DASWTX010001194         5239 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_235014, whole genome shotgun sequence.
ACCESSION   DASWTX010001194 DASWTX010000000
VERSION     DASWTX010001194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5239
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235014"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1029
                     /locus_tag="VGD38_18175"
     CDS             <1..1029
                     /locus_tag="VGD38_18175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730019.1"
                     /translation="ETEVGPLPRLSNEVLNQQSLIWPIDPQDRPHEVVATLGEVRGSF
                     DSDDSRHHLHSGLDVFGAYGTIVRAIHSEKVTSPLPNWGFASLNEGMRVGLFSYIHMH
                     VGRDQDAKMFDDPRFQAINSADGKLARVRIKRGTRFRPGDAVGTVNRMYHVHLIVGPS
                     GGEINPLELSLVGFKDDIPPIIEKDGIQLFDQSGPKFAEKQNGRLLVTGKVRIVVDAF
                     DRTNLNPSRRRLGLYMLGYQILNSDNTPARDFAEPRITQIFDRLPPDRESTKVAYAEQ
                     SGITVYGSETTRFLYEVTNWVRDGRANRDAWDTSKLPPGDYVLRIIARDYNGNEAQEG
                     RDLLITVR"
     gene            1045..1902
                     /gene="nadC"
                     /locus_tag="VGD38_18180"
     CDS             1045..1902
                     /gene="nadC"
                     /locus_tag="VGD38_18180"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR00078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0019363 - pyridine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HEY0730020.1"
                     /translation="MLKNLQNEAVDISQCIRRALDEDIGSGDVTTDTIVPANASLRGR
                     IIAKQNGVIAGLTIAEAVWRELDERITFAPQVTDGAKVDNRTIVAEVVGPARALLTGE
                     RTALNFLGRMSGIATLTRQFVDAVASTHAVILDTRKTAPGLRLTDKLAVRIGGGQNHR
                     TGLFDMVLIKDNHIDFAGSITAAVTRVRESGTKLEIEVEARTLEHVREALALEVERIL
                     LDNMSLELMREAVLLTDGRANLEASGNVSLENVLEVARTGVDYMSVGALTHSPKVFDV
                     SLEFVNKDD"
     gene            1895..2959
                     /gene="nadA"
                     /locus_tag="VGD38_18185"
     CDS             1895..2959
                     /gene="nadA"
                     /locus_tag="VGD38_18185"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: protein motif:HMM:NF006879.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HEY0730021.1"
                     /translation="MIEMFTDATTEEMYQKLKRLLSDTVPDFELRLKAELAVEINRLK
                     AVKNAVILGHNYMEPALFHSIPDFVGDSLELSRKAAETDKDIIVFCGVKFMAETAKIL
                     NPTKKVLIPSMKAGCSLAASITAEDVRELKRRFPGVPVVTYINTYADVKAESDICCTS
                     SNAVDVVNSLKTDKVIFIPDEYLAGNVARETGKKIIYPTREPRRQFPNDLEYEMIGWP
                     GRCEVHEKFSVEDIANVRKQFPDVVILAHPECSPEVVAASDYSGSTTAMMRYVEKTRA
                     PRYLLLTECSMGDNIAAANPDKEMLRLCSVRCPHMNQITLEDTLESLQKEQYEIVIDE
                     DVRKRALRSVERMLQIGRED"
     gene            2968..4575
                     /gene="nadB"
                     /locus_tag="VGD38_18190"
     CDS             2968..4575
                     /gene="nadB"
                     /locus_tag="VGD38_18190"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR00551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008734 - L-aspartate oxidase activity
                     [Evidence IEA];
                     GO_process: GO:0019363 - pyridine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HEY0730022.1"
                     /translation="MAETEVLIIGCGIAGATAALRLARNPNRHITIITRASDTHESNT
                     RYAQGGIIGRGPDDSAELLFEDIIAAGAGVSSPEAARILATEGPPLLTEVLERAAGVV
                     FDHGDDGAPIWGQEAAHSRRRILHVGDATGRAISNGLISTLSDYPNIKLKSEATAVDL
                     ITFPHHSRDPLDNYRDISCHGCYVFDREESTVHRYLARATVLATGGLGRIYRNTTNPA
                     GARGDGLAMAHRAGARIANAEYVQFHPTALAAPGAEGMLISEAVRGEGGVLLTPELRP
                     FMHKYSPEWKDLAPRDIVARAIHHEMEANGYSFVLLDIASHMPADAIRERFPFIYHEC
                     LKVGLDISQEPVPVVPAAHYFCGGVLVDEWGRSTIDNLYAIGEISCTGVHGANRLAST
                     SLLEGLVWGNRVAIEIERALDQPENGKLPKFNDIPPWDESGLSSDPDPALIQGDMQTI
                     QNIMWHYVGLVRSAERLSRAIRELRHLWNEIETFYRTTKLSDGLIGLRNAVEVALIVA
                     QAAQHNRQSRGCHYRQDSVSFEGDRLI"
     gene            4602..5174
                     /locus_tag="VGD38_18195"
     CDS             4602..5174
                     /locus_tag="VGD38_18195"
                     /inference="COORDINATES: protein motif:HMM:NF018925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
                     /protein_id="HEY0730023.1"
                     /translation="MSIVKGMAAGAAAGLVASFVMNQFQAAWGKLMENEERSHGAQSL
                     QQGSPQHGIGRELAERGVDEPDDDATVRTANAVSELVFQHHLAKSDTETAGAVVHYAF
                     GVSSGAIYGALAEVVPAATKYEGTAFGAAVWLIADEGVVPALGLSRKPTDYPLSIHAH
                     SFASHLVYGVTTELVRRAIRNTLNGRATAH"
BASE COUNT         1166 a         1546 c         1521 g         1006 t
ORIGIN      
        1 gagacagaag ttggaccact accacgtctc agtaacgaag tcctcaacca gcaatcactc
       61 atctggccca tcgacccgca ggatcgtccg cacgaagtcg tcgcgacgct cggcgaagtg
      121 cgcggcagct tcgattcaga cgacagccgt caccacctcc acagcggact cgacgtcttc
      181 ggcgcatacg gcacgatcgt ccgcgccatt cattcggaaa aggtgaccag tccactgcca
      241 aactggggct ttgcttcgct caacgaggga atgcgcgtcg gccttttttc ttacatccac
      301 atgcacgtcg gccgcgacca agacgcgaag atgttcgacg acccgcgttt ccaggcaata
      361 aacagcgccg acggaaaact cgctcgcgtg agaatcaaac gcggcacacg ctttcgaccc
      421 ggcgatgcgg tcggcaccgt caaccggatg tatcacgtac acctgatcgt tggtccatca
      481 ggcggcgaga tcaatcccct cgaactctcg ctcgtaggtt tcaaggacga cataccgccg
      541 atcatcgaaa aagacggcat acaactcttc gatcaatctg gtccaaagtt tgccgaaaaa
      601 caaaacggcc gcctgctggt caccggcaaa gtgcgcatcg tcgtcgacgc gttcgatcgc
      661 acgaacctga acccgagccg ccgccggctc ggcctgtaca tgctcggcta ccagatcctc
      721 aatagcgaca acacgcctgc gagagacttt gctgagccgc gcatcacgca gatcttcgat
      781 cgcttaccgc cggaccgcga gagcacgaag gtcgcctacg ccgagcagag cggcatcacc
      841 gtctatggca gcgagaccac gagatttctg tatgaagtca ctaactgggt gcgcgatggc
      901 cgggcaaaca gagacgcctg ggacacttcg aaactgccgc ccggcgatta cgtgctccgc
      961 atcatcgccc gcgattacaa cggcaacgaa gcccaggaag gacgcgatct tttgatcacc
     1021 gtccgataag agctagaata ggctttgctc aagaacctcc aaaacgaagc cgtcgacatc
     1081 tcccaatgta ttcgacgtgc actcgacgaa gacatcggca gcggcgacgt aaccaccgac
     1141 accatcgttc ccgccaacgc gtcccttcgc ggccgaatca tcgctaaaca aaacggagta
     1201 atcgctggtc taacgatcgc cgaggcggtt tggcgcgagc tcgacgaacg catcacgttc
     1261 gcgccgcaag tcaccgatgg cgcaaaggtc gacaacagaa ccatcgtcgc cgaagttgtt
     1321 ggtccagcac gcgccctgct caccggcgaa cgcaccgcgc tgaactttct cggacgcatg
     1381 tcgggcattg ccacactgac acgacagttt gtcgacgccg tcgcaagcac gcacgccgtt
     1441 attctcgaca cgcgaaagac tgcgcccggt ttgcgtctga ctgacaagct cgccgtacgt
     1501 atcggcggtg gacaaaacca tcgcaccggc ctcttcgaca tggtcctaat caaggacaac
     1561 cacatcgact tcgcgggttc gatcaccgcc gcggttacga gagttcgcga gtcaggcacg
     1621 aaactcgaga tcgaagtcga agcccgcacc ctcgaacacg tccgcgaggc gctggcgctc
     1681 gaagtcgaaa ggattttgct cgataatatg tcgcttgagc tgatgcgcga ggcggtcctg
     1741 ttaactgatg gccgtgcaaa cctggaggcc tctggcaacg tatcgctcga aaatgtgctc
     1801 gaagtagccc gcacgggcgt ggattacatg tccgtcggcg ctttgacgca ttcacccaag
     1861 gtctttgatg tgagtctgga gtttgttaac aaagatgatt gagatgttta ctgacgcgac
     1921 aaccgaagag atgtaccaga agttgaagcg gttgttgtcc gacacggtgc ccgacttcga
     1981 gctgcgtctc aaagcggagc tggcggttga gatcaatcgg ctcaaagccg tgaagaacgc
     2041 cgtcatactc ggtcacaact acatggagcc ggcgctcttt cactcgattc ccgatttcgt
     2101 cggcgactca ctcgagctca gccgcaaggc tgcggagact gacaaagaca tcatcgtctt
     2161 ctgcggcgtg aaattcatgg cggagacggc gaagattctg aatccgacga agaaggtgtt
     2221 gataccttca atgaaagccg gttgctcgct ggctgcgagc atcaccgccg aagacgtgcg
     2281 cgagttgaag agacgttttc cgggtgtccc ggtcgtgacg tacatcaaca cctacgcgga
     2341 cgtgaaagcc gagtccgaca tctgttgcac gtcgtcgaat gcggtcgacg tggttaattc
     2401 gttaaagact gacaaggtga ttttcattcc cgatgaatat ctcgccggca acgtcgcgcg
     2461 agaaacagga aagaagatca tatacccgac acgcgaaccg cgccgccagt ttccaaacga
     2521 tctcgagtac gagatgatcg gctggcccgg acgttgcgaa gttcacgaga agttcagcgt
     2581 tgaagacatc gcaaacgtgc gcaagcagtt tccggacgtg gtgatcctgg cccatccgga
     2641 gtgtagtccg gaagttgtcg ctgcgtctga ctattccggc agcacgacgg cgatgatgcg
     2701 ttacgttgag aagacgcgcg cgccgcgtta cctgctgctg accgagtgtt ccatgggcga
     2761 caacatcgcg gccgcgaatc ctgacaaaga aatgctgcga ctgtgcagtg tgcgttgtcc
     2821 gcacatgaac cagatcacgc tcgaagacac gctcgaatcg ctgcagaaag agcagtacga
     2881 gatcgtgatc gacgaagacg tgcgcaagcg agcactgcgt tcggtcgaac gaatgctcca
     2941 gattggccgc gaagactagt cgctgatatg gcagaaacag aggtgctaat catcggttgc
     3001 ggcatcgcgg gcgcaaccgc tgctctccgg ctggcgcgta atcccaatcg ccacatcacc
     3061 atcatcactc gcgcgtctga tacccacgag tcaaacacac gttacgcgca aggcggcatc
     3121 atcggccgcg gtcctgacga cagcgctgaa ctgttgtttg aagacatcat cgccgccggc
     3181 gcgggcgtga gctcgccgga agctgcacgc attctcgcga ctgaaggacc accgctgctg
     3241 actgaagtgc tcgaacgggc agcgggagtc gtcttcgatc acggcgatga cggcgcaccg
     3301 atctggggcc aggaagcggc acattcacgc cgccgcatcc tgcacgtggg cgacgcgacc
     3361 gggcgtgcga tcagtaacgg tctgatcagc acactcagcg actatccgaa tatcaagctc
     3421 aaatccgagg ctacggccgt cgacttgatt acgtttccac atcactcgcg cgatccactc
     3481 gacaactatc gcgacatctc gtgtcacggt tgctacgttt tcgatcgcga agagagcacg
     3541 gtccatcgtt acctcgcgcg cgcaaccgtg ctcgcgacag gcggactcgg acgaatctat
     3601 cgcaacacga cgaacccggc cggcgcgcgc ggcgacggct tggcgatggc ccatcgcgcg
     3661 ggcgcgcgca tcgcgaacgc tgagtacgtg cagtttcatc cgacggcgct ggcagcaccc
     3721 ggtgctgaag gcatgttgat cagcgaggcg gtacgcggtg aaggaggcgt gttgttgacg
     3781 ccggagttgc gcccgttcat gcacaagtat tcgccggagt ggaaagacct cgcgccgcgc
     3841 gacatcgtgg cgcgcgcgat ccatcacgag atggaagcaa acggctactc gttcgtgctg
     3901 ctcgacatcg cgtcgcacat gccggctgac gccattcgcg aacgctttcc gtttatttat
     3961 cacgagtgtt tgaaagtcgg gttggacatc tcgcaagagc cggtgcccgt cgtgcccgcg
     4021 gcgcattact tctgcggcgg cgtgctggtc gacgagtggg ggcggtccac gatcgataat
     4081 ctgtacgcga tcggagagat cagttgcacc ggcgttcacg gcgcgaaccg gctcgcgtcg
     4141 acttcgttgc tcgaaggttt agtttgggga aatcgtgtcg cgatcgagat cgaacgcgcg
     4201 ctcgatcaac cggagaacgg caagctgccg aagttcaacg acattccacc gtgggacgag
     4261 agtggattaa gctccgatcc cgatccggcg ctgatccagg gcgacatgca gacgattcaa
     4321 aacatcatgt ggcactacgt tggtctggtg cgtagcgcgg aacgcctgtc gcgagcgatt
     4381 cgcgaactgc gtcacctgtg gaacgagatc gagactttct atcgcactac aaaactgtct
     4441 gacggattga tcggcttacg caacgcggtt gaggtggcgc tgatcgtcgc gcaagcggcg
     4501 cagcacaatc gacagagtcg tggatgtcat tatcgtcaag attctgtttc gtttgaaggc
     4561 gaccggctga tttgattctg gcgagttgta tactcgcggc gatgagtatc gtgaaaggaa
     4621 tggcagcggg tgctgcggcc gggttagtcg cttcctttgt gatgaaccag ttccaggcag
     4681 cttggggaaa gctgatggaa aacgaggagc gatctcacgg cgcgcaatcg cttcagcagg
     4741 gttcgccgca acacggaatc ggccgcgagc tcgcggagcg cggcgtcgac gaacctgatg
     4801 acgatgctac tgtcaggaca gccaacgctg tcagcgaact cgtcttccaa caccacctcg
     4861 cgaaatcaga cacagagacc gccggagccg tcgtgcatta cgctttcgga gtgagctcgg
     4921 gagcgattta tggggccttg gcggaagtcg tcccggctgc gacaaaatat gaaggaacgg
     4981 cgtttggcgc ggcggtgtgg ttgattgccg atgaaggggt tgtgcccgcg cttggtttgt
     5041 cacgtaagcc gaccgattat ccgctttcga ttcacgctca ctcgtttgct tcgcacctcg
     5101 tctacggagt gactaccgaa ctcgtccgtc gcgcgattcg caacactctt aacggtcgcg
     5161 ccacagctca ttagaaatcg acccaggtac cggcgccttc cgactgtgct tcccggaaca
     5221 gatactcggc agaaactac
//
LOCUS       DASWTX010001195         2614 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_235019, whole genome shotgun sequence.
ACCESSION   DASWTX010001195 DASWTX010000000
VERSION     DASWTX010001195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2614
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235019"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1016
                     /locus_tag="VGD38_18200"
     CDS             <1..1016
                     /locus_tag="VGD38_18200"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEY0730024.1"
                     /translation="TVWRWNRACYGVTGGVPHLRIENRALPSGPTIVDEIANAAFFAG
                     LMTVLPEAYGVIANRMSFDDAKLNFFRAARHGLDAHFQWIDGHSHSAASLILDELLPL
                     AQEGLASSGVLKGNIDKYLGIVEERVQSRQTGARWIMNSLASFGDSAAKDSSQRRLAT
                     AMLANQKQGEPVHRWPIAEGIDSEAWEYGYRTIGQFMSTDLFTVSPDDLIDFAASVMD
                     WRHIRHVPVEDREGRLVGLVTHRGLLRLLTSGANRELKPITVQEIMVKDPVTVSPSTS
                     SLEAMELMRRHRVGCLPVVEGDQLVGIVTSYDFLEASARLFQQHLKEHTEEIPDRAFT
                     QGA"
     gene            1037..1777
                     /locus_tag="VGD38_18205"
     CDS             1037..1777
                     /locus_tag="VGD38_18205"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEY0730025.1"
                     /translation="MPSAQQKEFQPEPVTTDRKQTDLHGLLCEIHAAKIGNLNSLHRR
                     GTVLFAEGEQSRGVYVLRSGRAKVSISSSEGRVVMLRIAEAGDVLGLNPVLRNLPYDT
                     TVKTLEPCRTDFISRAELMEIIQQSETGAQMIMSALSRELAVVTHRAKSLLLPQTVNA
                     RLATLLLDWCKANGSDGAEVPRIDRAFTHEELAQLIGSSRETVTRLLASLSKGCIIRV
                     TADSILIFNRPALEKIAVGDGRHITDDR"
     gene            1850..>2614
                     /locus_tag="VGD38_18210"
     CDS             1850..>2614
                     /locus_tag="VGD38_18210"
                     /inference="COORDINATES: protein motif:HMM:NF021235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HEY0730026.1"
                     /translation="MLYKLTKTGLICALIGLAVFWLNSTTSSYSASTDQTQLATHKSD
                     DFVGSDACKDCHEDQFKNFAHTSHAQLTKLGSWKEKVTGCESCHGPGKAHVEEGDPAK
                     IISFKNKSSKETSETCLTCHSGREEHNNFRRGEHWRNDIGCTDCHSTHSPPTGRQLAA
                     SNVFVSKSNAQKPGFSDLKLLRTSEPQLCLSCHSETKHQFNLPFHHKVLEGAMKCSDC
                     HNPHGGFELKQTRLATGADAACIKCHADKQGPFVYEH"
BASE COUNT          618 a          746 c          735 g          515 t
ORIGIN      
        1 gcacggtgtg gcgctggaat cgagcgtgtt acggcgtgac tggcggtgtt ccgcacctgc
       61 gcatcgagaa tcgcgcgctg ccgtctggtc caacaatcgt ggatgagatt gccaacgccg
      121 cgttctttgc cggcctgatg acggtcctgc cagaagccta cggcgtgatc gcgaaccgca
      181 tgtcgttcga cgacgcgaag ctgaactttt tccgcgccgc cagacacggg ctcgatgcgc
      241 atttccagtg gatcgacggg catagccata gcgcggcttc actgattctc gacgagctac
      301 ttccactcgc gcaggaaggc ttggcgagtt cgggtgtact gaagggcaat atcgataagt
      361 atctgggaat cgtcgaggaa cgcgtgcaaa gccggcaaac cggagcgcgc tggatcatga
      421 attccctcgc ctcgttcgga gactccgccg cgaaggacag cagccaacga cgactggcca
      481 ctgcgatgct ggccaaccag aagcaaggcg aacccgttca tcgttggccc atcgccgaag
      541 gcatcgactc agaagcatgg gagtacggct atcgcacgat cggtcaattc atgtcgacgg
      601 acctcttcac cgtcagcccc gacgacctga tcgattttgc ggcgagcgtg atggactggc
      661 gccacatccg tcacgtcccc gttgaagatc gcgaaggccg cctggtgggt ttggtgactc
      721 accgcggact gcttcgcctg ctgaccagcg gcgccaatcg agaactcaaa ccaattacgg
      781 ttcaggagat catggtgaaa gacccggtca ccgtttctcc ttcaacctcg tctttggaag
      841 caatggaact catgcgtaga caccgcgtcg gttgtcttcc ggtagttgaa ggcgatcagc
      901 tagtcggaat cgttacgtct tacgattttc tcgaagcttc cgcgaggctc tttcagcaac
      961 atctcaaaga gcatactgaa gagatcccgg accgggcatt tacacagggt gcataagggg
     1021 cccgaggagt gtgatcatgc cgagcgcgca acagaaagag tttcagccgg aaccggtaac
     1081 aacagaccgg aagcagaccg atctacatgg actgttgtgc gaaattcacg ccgcgaagat
     1141 cggtaacctg aattcacttc atcgccgtgg aacagtcctc ttcgccgaag gagaacagag
     1201 ccggggcgtc tacgtgctgc ggagcgggcg cgcgaaagtg tccatatcgt caagcgaagg
     1261 acgcgtcgtg atgctgcgca ttgctgaagc aggcgacgtc ctgggtttga acccggtgct
     1321 gcgaaatctt ccttacgaca cgaccgtgaa aacgctcgag ccgtgtcgca cggattttat
     1381 ctcccgcgcc gaattgatgg agatcattca acagagcgag accggggcgc agatgatcat
     1441 gagcgccttg agccgggagc tggcggtggt tactcatcgg gcaaagtcat tattgttgcc
     1501 gcaaaccgta aacgcgcgtt tagccacgtt gctgctcgac tggtgcaagg caaatggatc
     1561 tgacggagcc gaagtgccac ggatcgatag agcttttacc catgaagagc tggcgcaact
     1621 catcggctcg tcacgcgaaa ccgtgacacg tttgctggca agtctcagta aagggtgtat
     1681 aattcgcgtc acagcagaca gtattctgat ttttaatcgc cccgcccttg agaagatagc
     1741 cgtcggtgac gggcgtcaca tcactgacga ccgttgaaaa cctagaatgc tccttgcaat
     1801 ttcgaactca gggtcagttc aaactcaaag gaattaagga gaaccccgct tgttgtacaa
     1861 actgaccaag acgggattga tctgcgcgct gatcgggttg gccgtttttt ggttgaactc
     1921 aacgacctct tcctactctg cgtcaacgga tcaaacccaa cttgcaaccc acaaatcgga
     1981 cgacttcgtc ggcagcgacg cctgcaagga ctgccacgaa gaccaattta aaaactttgc
     2041 gcacacttcc cacgcgcagc tcaccaagct cggcagttgg aaagaaaagg tgacgggttg
     2101 cgagtcgtgt catggtccag gcaaggcaca cgtcgaagaa ggcgatcccg cgaagatcat
     2161 ttccttcaag aacaaatctt cgaaggagac ttccgagacg tgtttgacct gccactcagg
     2221 ccgggaagaa cacaacaact tccgccgcgg cgagcactgg cgcaacgata tcggttgcac
     2281 cgattgccac tcgacccact cgccacccac cggacggcaa ctggcggctt caaacgtgtt
     2341 cgtgtcgaag agcaacgcgc aaaagcccgg cttctccgat ctgaagttgc tcaggaccag
     2401 cgaaccgcag ctttgcctga gttgccacag cgagaccaag caccagttca acctgccgtt
     2461 ccatcacaag gtgctggaag gcgcgatgaa gtgcagtgac tgccacaatc cacacggcgg
     2521 ttttgagctc aaacaaacaa gactcgccac cggcgcagac gcggcttgca tcaagtgtca
     2581 cgccgacaag cagggaccat ttgtctacga gcac
//
LOCUS       DASWTX010001196         3966 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_277096, whole genome shotgun sequence.
ACCESSION   DASWTX010001196 DASWTX010000000
VERSION     DASWTX010001196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3966
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277096"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..405)
                     /locus_tag="VGD38_18215"
     CDS             complement(<1..405)
                     /locus_tag="VGD38_18215"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEY0730027.1"
                     /translation="MRANVFHGKNKIRVEEVEKPRAGAGEAVLRVTLTTICGTDLHIV
                     RGEYPVASGLVIGHEPVGVIEELGPGVSGYNIGDRVLVGAITPCGQCNACLSGHAAQC
                     GHGEGYEALGGWRFGNTINGAQAEFLKVPNAQA"
     gene            complement(409..867)
                     /locus_tag="VGD38_18220"
     CDS             complement(409..867)
                     /locus_tag="VGD38_18220"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY0730028.1"
                     /translation="MRILLAIDGSPCSDVAVQEVARRPWPAGSSVKVLTTYEIPVPPT
                     PEGWALPANYVQEMDAALRKQAQQVVDRAVEKLKPNKSFAVDASLLPGPPRAVILDEA
                     ENWRADLVVLGSHGYSAWKRFLLGSVSQAVVSHAKCSVEVVRCPVVGRKE"
     gene            1036..1923
                     /locus_tag="VGD38_18225"
     CDS             1036..1923
                     /locus_tag="VGD38_18225"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY0730029.1"
                     /translation="MSVQRPAIEFRNVSLSFDDKLALNNVSFVLDRNEMIVVTGVSGS
                     GKSVLLRLAMGLIKPDSGQVLIEGKEIQDLDEPELITLRGGLMGMVFQEDSLFTGLPV
                     YENAAYRLEEHGWSEDEIERAVNEVLRYVGLEGEERKFPEELSGGMKRRLEIARALIG
                     WPRIMLFDEPTMSLDPLAALKVLDLVIRARDVNQISSLYVTKKIHEIDYLGNYRAETF
                     GKGEIRIVAAPATNAPKTRVIILEDGAIAFNGSVAEFKNSELKVIRELSSLDHHDHMK
                     DPYFVDPWDKRRQPAETIL"
     gene            1945..2178
                     /locus_tag="VGD38_18230"
     CDS             1945..2178
                     /locus_tag="VGD38_18230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730030.1"
                     /translation="MTTLRSYIDQNQQPRFVPGTIMTDETQHEVRCGMCARELYVDDD
                     GYRLYMEAMNAGLDNPFRCETCNEEYDDLVYEG"
     gene            complement(2183..>3966)
                     /locus_tag="VGD38_18235"
     CDS             complement(2183..>3966)
                     /locus_tag="VGD38_18235"
                     /inference="COORDINATES: protein motif:HMM:NF024938.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HEY0730031.1"
                     /translation="VCRNAGMRLIGPNCMGIANTNPEVLLDATFAPGIPPRGRVGFSS
                     QSGALGLAIMEFAGSLGLGISTFVSVGNKADISGNDLLRYWEADDDTDVILLYLESFG
                     NPKKFSEIARRVGRKKPIAVVKSGRSAAGARATSSHTGALIAASDVTVDALFRQAGVV
                     RTDTLAELFDVAALLANQPLPEGRRVGIITNAGGPAILCADACEARGLEVPVLSESSQ
                     VRLRAFLPAGASVGNPVDMIASAPAEHYRKAIEIAGNDDNIDSLIVIFTPPLVTRADD
                     VAKAIVEGVQHIDKHKPVLSVFLSSQPAPMELRTSGVCIPSYSFPETAAIALARATRY
                     RQWRERRETSPARFENIRADEAAAIVAAALVRGEGWLTTEEVAALCSCYGLPLIEQRI
                     VANAEEAGEAAEEFGGEVALKAIAPDLIHKTEAGAVRLHLHDADATRAAAREMSEMLS
                     SRGHAVSGFVVQRMAQRGVEMLVGVVHDPQFGPVVACGAGGVQVELLRDVSVRITPLS
                     KEDASDMIRELKTFPLLKGFRGSVPADVAALEDGLLRVSAMVEDIPQIAELDCNPFVV
                     HETGATILDARIRVTTVAPRPLVGVRR"
BASE COUNT          895 a         1216 c         1051 g          804 t
ORIGIN      
        1 agcctgcgca ttcggcactt tcaaaaactc ggcttgcgcg ccgttgatcg tgtttccgaa
       61 tcgccagcca ccgagcgctt cgtatccttc gccatgaccg cattgcgccg cgtgacctga
      121 caagcacgcg ttgcattgcc cacatggcgt gatggcgccg acaagcactc ggtcgccgat
      181 gttgtacccc gacacacctg gaccaagctc ttcgatcaca ccaacaggtt cgtgaccaat
      241 caccaaccca gacgcaaccg gatattcacc cctcacaata tgcagatcgg ttccgcaaat
      301 cgtcgtgagc gtcacccgaa gcaccgcttc acccgcgccg gcgcgtggtt tctccacctc
      361 ttcgacgcga attttgttct tgccatgaaa aacatttgct ctcatttctt actccttacg
      421 cccaaccacc ggacacctaa ccacttccac cgaacacttc gcgtgtgaca caacagcctg
      481 cgaaaccgag cccaaaagaa atcgtttcca cgcgctgtat ccatgcgaac ccagcacgac
      541 cagatcggcg cgccagtttt ccgcctcgtc gagaatcact gccctcggtg gaccaggcaa
      601 caacgacgcg tcgacggcga aagatttgtt tggcttgagt ttttctacag cccgatcgac
      661 gacctgttgc gcttgcttgc gaagcgcggc gtccatctcc tgaacgtaat tggccgggag
      721 tgcccagcct tcaggtgtcg gcggcacagg gatctcatac gtcgtcagca ccttgaccga
      781 cgaacctgcc ggccaaggcc gccgcgcaac ctcctgcact gccacatcgc tacatggcga
      841 gccatcaatt gctaaaagta ttctcataac catacctccg cggttttcac cacctcacgt
      901 gcgtgcacgg ctcgtaccag tgatcaacgg cggatttttc cgtaactcag caaagcagtt
      961 gcgcggtatt ccacagccaa cctgaaattt cgcccatctt ccacgctggc atggtcgttg
     1021 ctcgaccgca gtgttatgag tgttcaaaga ccggcaatcg agtttcgcaa cgtttcgctg
     1081 agcttcgacg acaagctcgc gttgaacaac gtcagctttg ttctcgatcg gaatgaaatg
     1141 attgttgtga ccggtgtgtc cggctcgggc aagtctgttc tgctgcgcct cgcaatgggt
     1201 ctaatcaaac ccgattccgg ccaggtgctg attgaaggca aagagattca ggacctcgac
     1261 gagccggagc tgatcacgct gcgcggtgga ctcatgggta tggtgtttca ggaagactcg
     1321 ctcttcaccg ggctgcccgt ttatgaaaac gcggcttatc gactcgaaga gcatggctgg
     1381 tctgaagatg aaatcgagcg agccgtaaac gaggtgttgc gctatgtcgg gctcgaggga
     1441 gaagaaagaa agtttcccga agagctttcc ggtgggatga aacgccggct ggagatcgca
     1501 cgcgcgttga tcggatggcc gcgcatcatg ttgtttgacg aaccgaccat gagcctcgat
     1561 ccgcttgcgg cgctcaaggt tttggatctt gtaatcaggg cgcgcgacgt caatcagatt
     1621 tcatcgttgt acgttactaa gaagattcac gagatcgact acctgggaaa ctaccgcgcc
     1681 gaaacgtttg gcaagggcga gatcaggatc gtggcggcgc cggcaacgaa cgcgcccaaa
     1741 acgagggtga tcattctcga agacggcgcc attgccttca acggatcggt ggcggagttt
     1801 aagaacagcg agttgaaagt gatccgggag ctatcgagtc tcgaccatca cgaccacatg
     1861 aaagatccgt actttgtcga tccatgggac aagagacgcc aacctgcgga aacgattctt
     1921 tagttcgcaa attttggagg gcttatgaca acacttcgct cttatatcga tcagaatcaa
     1981 caaccacggt tcgttcccgg gacgatcatg acggacgaga cgcagcacga ggtccgctgt
     2041 ggtatgtgtg ccagggaact ctacgtggac gacgacggct atcggctgta catggaggcg
     2101 atgaacgccg gtttagacaa cccgtttcgc tgcgagactt gcaacgagga atacgacgat
     2161 ctcgtttacg aaggatagca gcctagcggc gtacgccaac taacgggcgc ggcgcaaccg
     2221 tcgtcacgcg gatgcgggca tcgagaatgg ttgcgcccgt ctcgtggacc acgaacgggt
     2281 tgcaatcaag ttcggcgatc tgcggaatgt cttcgaccat cgcgctcacc cgcaacaatc
     2341 cgtcttcaag cgcggcaaca tctgccggaa cactaccgcg aaagcccttc agcagcggaa
     2401 aagtcttcaa ctctcgaatc atatccgagg cgtcttcttt tgagagcggc gtgatccgca
     2461 cagacacgtc tcgcaataac tcgacctgca cgccgccggc gccgcacgcc accactggtc
     2521 caaactgcgg atcgtgaacc acgccaacca gcatttcgac accacgctga gccatgcgct
     2581 gaacgacgaa tcccgagacc gcgtgccctc gtgagctcaa catctcgctc atctcacgtg
     2641 cggccgcgcg agttgcatct gcgtcgtgga gatgaagtct gaccgcaccg gcttcagtct
     2701 tgtgtatcag gtcaggcgcg atcgctttga gcgccacttc gccgccaaac tcttccgccg
     2761 cttcgccggc ttcttcagcg ttcgccacga ttctctgttc gatcaacggc aagccataac
     2821 aggaacaaag cgccgcgacc tcctcggttg ttaaccaacc ttcgccacgc accagcgccg
     2881 ccgcgacgat cgccgcggct tcgtcagcac ggatgttttc aaaccgcgcc ggagaagttt
     2941 cccggcgttc acgccattgc cggtaacgtg tcgcgcgcgc caacgcgatc gccgccgttt
     3001 cgggaaatga atacgagggt atgcaaactc ccgatgtcct aagttccatc ggcgcaggtt
     3061 gagatgaaag aaagacactc aaaactggtt tgtgcttatc gatgtgctgc acaccctcga
     3121 caatcgcttt cgcaacgtcg tcagcgcgcg tgacgagcgg cggcgtaaag atcacgatca
     3181 gcgaatcgat gttgtcgtcg ttcccggcga tctcgatcgc cttccggtaa tgctcagccg
     3241 gcgctgaagc aatcatgtca acaggattcc ccacacttgc gccagccggc agaaacgcgc
     3301 gcaatcgcac ctgactgctt tccgataaca cgggaacttc aagtccgcgc gcctcacacg
     3361 cgtcggcgca aagaatcgct ggtccaccag cattggtgat gattccgact cgacgtccct
     3421 ccggcaacgg ttggttcgcg agcagagccg ccacatcgaa cagctccgcg agtgtgtctg
     3481 tacgaacaac tccggcttgt cgaaacaacg catcgaccgt aacgtccgac gcggcgataa
     3541 gagcgccggt atgcgatgaa gtcgcacgcg cgccggcggc cgagcgtccg ctcttcacca
     3601 ccgcgatcgg tttcttgcgt ccaacacgac gcgcgatctc cgaaaacttc ttcggatttc
     3661 caaacgactc gagatacaga aggatcacgt ccgtatcatc atcggcttcc cagtagcgca
     3721 aaagatcgtt tccggaaata tcagccttgt taccgacaga aacaaacgtt gaaataccaa
     3781 gaccaagcga accggcaaac tccatgatcg ccaagccaag cgcgccgctc tgtgatgaaa
     3841 aaccaacgcg gccgcgcggt ggaatgccgg gagcaaacgt cgcgtcgagc aacacttccg
     3901 gattcgtgtt ggcgatgccc atgcagtttg gcccaatcaa cctcatgccg gcgttgcggc
     3961 atacgc
//
LOCUS       DASWTX010001197         2855 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_144490, whole genome shotgun sequence.
ACCESSION   DASWTX010001197 DASWTX010000000
VERSION     DASWTX010001197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2855)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2855)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2855
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144490"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..222
                     /locus_tag="VGD38_18240"
     CDS             <1..222
                     /locus_tag="VGD38_18240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730032.1"
                     /translation="ASELEKAGIKLMQPVDANGVFAIIPEKYIEALQKKYFFYVWNEE
                     ISECRFMASFDTTEDDIHDFVALVRKIVK"
     gene            complement(183..1466)
                     /locus_tag="VGD38_18245"
     CDS             complement(183..1466)
                     /locus_tag="VGD38_18245"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEY0730033.1"
                     /translation="MRLNPVRWLLLAGAIHITLTLAIFLVGHFQLLPNQFDQYGTGLS
                     FAIDGDSYRTLSSQLTIELQTNGVSGWLAIKAPLHCRLYSILFVTIGSVLGHNVLAAE
                     PLNLVYYLGILTCVYFLGREMFNARAGMLAAVIVAVWPSFLMHSTQLIRDSFAIFCLL
                     ALMLVLTLVLKREFSWRAAAVGAVAGAAFVTLFWVLRGNMWNVVVFAVGLTIALQVFR
                     MFRSDKWLLPNAAVIAIVIVTMLFVPSRLESTTLPGVKPPATPLAIPVNRPPEGVFSI
                     ILKQMGQRRAGFNRYRAQESNIDADVQLKTGNDVLRFIPRATVIGFFAPFPRMWIQPG
                     SFGRTSRLLSGAETLVMYLLYVAAAVCVWRNRKRLELWLLFLVAAAGTIALGLVVVNA
                     GALYRLRYVFWIMFIIMAAETIAHFTILRTSATKS"
     gene            1491..>2855
                     /locus_tag="VGD38_18250"
     CDS             1491..>2855
                     /locus_tag="VGD38_18250"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: protein motif:HMM:NF012589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046316 - gluconokinase activity [Evidence
                     IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA];
                     GO_process: GO:0046177 - D-gluconate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HEY0730034.1"
                     /translation="MSDSLNSSVLSIDVGTSGVRAALFDEEGNQIEGAQAATRRDLAD
                     FAELDPDALVDEVRKTVDELLARSGQRRFETTAISAFWHSLMGVDEDGVPTTPLLTWA
                     DTRAMEAAKQLRAEFEELEIHARTGCRFHPSYWPAKLRWLKTKHPEQFNATRQWLGFA
                     EYLCLRLFGKTAASVSMASATGLFNQRTCNWDLSFADALGVSKNLLPEIVTQQDLFVT
                     GDGAANNIGGGCTTKDNIALMIGTSGAMRVSYAGDPPEKLPPSLWSYRASRDRVVVGG
                     ALSDGGGLLHWLVQSLNTGPDLHQQLAALEPDAHGLTILPFWSGERSTGWSTEARGGI
                     FGLRQQTTTVDIIRAALESIAYRFALIADALDEIAPGAKIIATGNALRSSPVWLQIIA
                     DVLGRPVMFGGTPEASIRGAALLALEAVGKIGNLDAVSVSVDEVFEPDMQRHARYREG
                     LERQQ"
BASE COUNT          641 a          819 c          846 g          549 t
ORIGIN      
        1 gcaagcgagt tggaaaaggc gggcataaag ctcatgcagc ccgttgacgc gaatggcgtg
       61 tttgccatca ttccggagaa atacatcgag gcgttacaga agaagtattt cttttacgtc
      121 tggaacgaag agatctcgga atgccgtttc atggcgtcgt tcgacacgac cgaagacgac
      181 attcacgact tcgtcgcgct ggttcgcaag atcgtgaagt gagcgatcgt ttccgccgcc
      241 atgatgatga acatgatcca gaacacgtaa cgcagccgat aaagtgcgcc cgcgtttacc
      301 accaccagcc ctaacgcgat cgtgccggca gcggcaacga gaaacagcag ccacaactcg
      361 agcctctttc gattgcgcca cacgcaaacc gcggccgcga cgtagagcaa atacatcacc
      421 aacgtttccg cgccactcag caagcggctg gttcgtccga agcttccggg ttgaatccac
      481 atgcgtggaa acggcgcgaa gaaaccgata acggttgcgc gcggaatgaa tcgcaacacg
      541 tcattgccgg ttttaagctg tacgtcggcg tcgatgtttg attcctgcgc gcgatagcgg
      601 ttgaagccgg cgcggcgttg gcccatctgt ttgaggatga tgctgaaaac accttcaggc
      661 ggtctattaa ccgggatcgc gagcggagtc gcgggcggct tcactcccgg cagcgtcgtg
      721 ctttccagcc gcgaaggaac gaacagcatc gtgacgatca cgattgcgat cacggcggcg
      781 ttcggtagca gccacttgtc gctgcgaaac atccggaaca cctgcaacgc gatcgtgagt
      841 ccgacggcga agacgacgac gttccacatg tttccgcgca gcacccaaaa caatgttacg
      901 aacgccgcac ccgcaactgc gccaacagca gccgcgcgcc acgagaactc gcgcttcaac
      961 acgagcgtca atacaagcat tagcgcgagc aggcaaaaga tcgcgaacga gtcgcggatc
     1021 agttgcgtcg agtgcatcag gaacgacggc cagacagcga cgatcaccgc agcgagcatt
     1081 ccagcgcgcg cgttgaacat ttcgcggccg agaaaataga cgcaagtgag aatgcccaga
     1141 tagtaaacga ggttcagcgg ttcggcggcg aggacgttgt gaccgagaac gcttccgatc
     1201 gtgacgaaca ggattgaata gaggcggcag tgcagcgggg ctttgatggc cagccatccc
     1261 gaaaccccgt tcgtttgtag ttctattgtt aactggctcg aaagtgtgcg atagctgtcg
     1321 ccatcgatcg cgaacgagag gccggtgccg tactgatcga actggttggg cagcagttga
     1381 aaatgtccaa cgagaaaaat cgcgagggtt agtgtaatgt gaatggcgcc ggccaggagc
     1441 aaccagcgca cgggatttaa tcgcatcagg tctcgcagca ttttacaaat atgagcgaca
     1501 gcttgaacag ttctgtattg agcatcgacg ttggtacgtc gggtgttcgc gcggcgctgt
     1561 ttgatgaaga gggcaatcag atcgaaggcg cgcaggcggc gacgcggcgt gaccttgcgg
     1621 attttgcgga gctcgatccc gatgcgttgg tcgatgaagt aagaaagact gttgacgagt
     1681 tgctggcgcg gtcaggtcag cggcgctttg agacgacggc gatctcggcg ttctggcaca
     1741 gcttgatggg cgttgacgaa gatggcgtgc cgacgacgcc gttgctgacg tgggccgaca
     1801 cacgcgcgat ggaagctgcg aaacagttgc gtgcagagtt cgaggaactg gaaattcacg
     1861 cgcgcacggg ttgtcgcttt catccgagtt actggcccgc gaagctgcgt tggttaaaga
     1921 ccaagcatcc ggaacagttc aatgcaacgc ggcagtggct cgggtttgct gagtatttgt
     1981 gtttgcggtt attcggtaag actgccgcga gtgtttcgat ggcctccgcc accgggctct
     2041 tcaaccaacg cacctgtaat tgggatttaa gtttcgccga cgcgctcgga gtttctaaaa
     2101 atctccttcc tgaaatcgtc acgcaacaag acctcttcgt caccggcgac ggcgcggcaa
     2161 acaacatcgg cggcggttgc accacgaaag acaacatcgc cttgatgatc ggcacttccg
     2221 gcgccatgcg cgtctcatac gccggcgacc cacccgaaaa attgccacct tcgctctgga
     2281 gctatcgcgc ctccagagat cgcgtcgtcg ttggcggcgc actgtccgac ggcggcggac
     2341 tgttgcactg gctggtccaa tccctgaaca ccggccccga tttacatcag caactcgccg
     2401 cactcgaacc cgacgcgcac ggactcacga tccttccatt ctggtcaggc gaacgcagca
     2461 ccggctggtc caccgaagcg cgcggcggca tcttcggcct gcgtcaacaa acaaccaccg
     2521 tcgacatcat tcgcgccgca ctcgaatcga tcgcatatcg tttcgccctc atcgccgatg
     2581 ccctcgacga gatcgcgccc ggcgcgaaga tcatcgcgac cggcaatgcg ttgcgctcgt
     2641 cgcccgtctg gctacaaatc atcgccgacg ttttaggacg tccggtgatg tttggcggca
     2701 cgcccgaagc ctcgatccgc ggggctgcct tgcttgcgct ggaagcggtg ggcaaaatag
     2761 gaaacctcga tgcagtttcg gtttcagtcg acgaggtttt cgaacccgac atgcagcgcc
     2821 acgcgcgcta ccgcgaaggt ctcgaacggc agcag
//
LOCUS       DASWTX010001198         2157 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_60224, whole genome shotgun sequence.
ACCESSION   DASWTX010001198 DASWTX010000000
VERSION     DASWTX010001198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2157)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2157)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2157
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60224"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..807
                     /locus_tag="VGD38_18255"
     CDS             <1..807
                     /locus_tag="VGD38_18255"
                     /inference="COORDINATES: protein motif:HMM:NF012904.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HEY0730035.1"
                     /translation="HQNLTKLLEYPISALVAAGGTGELYSLTPAEYLRVIELTALAVE
                     DRVPVIAGVGFGQRIAIEMVQAAEKAGADGILIFPPYYSQADDDGFFEYYRSIGAATR
                     LGLIIHSRDWARVNPAMVERLTAIPNLVAWKDGQGDIRQLQSIRHHVGERLVWIGGAG
                     DDLVGAYYSTGIRAFSSSIAAVAPALSLKLHELAAADDGEALAELLETCVIPLFALRA
                     RRRGYEVSAMKALMDMVGLNGGPVRPPLVNVTPEEMDELRTILSHWEKYL"
     gene            820..1986
                     /locus_tag="VGD38_18260"
     CDS             820..1986
                     /locus_tag="VGD38_18260"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEY0730036.1"
                     /translation="MTNIMSSTMKASVLCDVRRLEVRDVPRPAISPYEVLVRTTAVGL
                     CGTDVHIFAGHANYNTNEYDQPIPLTVQPQILGHEIAGVVEEAGSAIEDLKAGDRVVI
                     DQGLNCVSRRREVQCEYCATGNSHQCEFYREHGITGLPGGLAEFIAVPAVNAVKITAP
                     IEPAAAALAEPLGCIVHSSDTVTKTRTRHVINAPTVERRVRSVLICGAGPAGLLFTQY
                     LRNVLGYEGLLIVSDPHEHKRQLAKNFGASEAIDVGEDVVEAVRDYTGGKGVEYLIEA
                     SGSGKVFRSIPGLICKQATVLLYGHGHSGADVSVLSSILFKEPVLVSSAGASGGFEAD
                     GRPSVYTRALSLIEQGKIDVQPLITHRYDSLADVEKALAGEIRSEDYVKGVVVL"
BASE COUNT          409 a          580 c          709 g          459 t
ORIGIN      
        1 catcagaacc tgaccaagtt gctcgagtat ccgatctcgg cgctcgtcgc ggcgggtggc
       61 acgggcgagc tttattcgct gacgccggct gagtacttgc gcgtgatcga actgaccgcg
      121 cttgcggttg aagatcgtgt gccggtgatc gctggcgttg gttttggtca acggatcgcg
      181 atcgagatgg tccaggctgc ggagaaggcc ggcgcggatg gcattctgat ttttccgcct
      241 tactactcgc aggcagatga cgacggtttt tttgaatact accgttcgat tggcgcggca
      301 acgcgtttgg ggctgattat tcacagccgt gattgggcca gggtcaatcc ggcgatggtt
      361 gaacggctga ctgcgatacc gaatctcgtc gcgtggaaag acgggcaggg cgacattcgc
      421 cagcttcagt ccatcaggca tcacgtcggc gagcgtttgg tttggattgg cggcgccggt
      481 gacgatctgg ttggcgcgta ttacagcacg ggaattcgcg cgttcagttc gagcatcgcc
      541 gcggttgcgc ccgcgctttc gttgaagctg cacgagcttg cggcggctga cgatggtgaa
      601 gcgctcgcgg agttgttgga gacttgtgtg attccgctgt tcgcgctgcg tgcgcggcgg
      661 cgaggttatg aagtgtcggc gatgaaggcg ctgatggaca tggttgggtt gaatggcggg
      721 ccggtgcggc cgccgctcgt gaacgtcaca ccggaagaaa tggacgagct ccgcacgata
      781 ctttcgcact gggaaaagta cctttaacgc ggacctcaca tgactaacat tatgtccagc
      841 acgatgaaag cgagtgtgtt gtgcgacgtg cggcggctcg aagtgcgcga cgttccgcgt
      901 cctgcaatct caccttacga agtgttggtc agaacaacag ccgtcggact ttgcggcacc
      961 gacgtacaca tcttcgcggg tcacgcaaac tacaacacca acgaatacga tcaaccgatc
     1021 ccgctcaccg ttcagccgca gatcctcgga cacgagatcg ccggcgtggt cgaagaagca
     1081 ggcagcgcga tcgaggatct caaggccggc gatcgcgtcg tgatcgatca gggtttgaac
     1141 tgcgtgagcc gccgccgcga agtgcagtgt gagtactgcg cgaccggaaa ctctcatcaa
     1201 tgcgagttct atcgcgaaca cggcatcacc ggtttgcccg gcggtctcgc cgagtttatc
     1261 gccgtgcccg cagtgaacgc cgtcaagatc acggcgccga tcgagcccgc tgcagcggcg
     1321 ctggccgagc cgctgggctg catcgttcac tcgtccgaca cagtcacaaa gacacgcacg
     1381 cgccacgtga ttaacgcgcc caccgtcgag cggcgcgtcc gcagcgtgtt aatatgcggc
     1441 gctggtcccg cggggttgct gttcactcaa tacttacgaa acgtgctcgg gtacgaaggc
     1501 ttgctgatcg tcagcgatcc gcacgaacac aaacgacagc tcgccaaaaa cttcggcgcg
     1561 agcgaagcga tcgacgtcgg cgaggatgtt gtcgaagcgg tgcgtgacta cacgggcggc
     1621 aaaggcgtcg agtatctgat cgaagcttcc ggttccggca aggtctttcg tagcattccg
     1681 gggttgattt gcaagcaggc gacggtgctg ctttacgggc acggtcattc gggcgcggac
     1741 gtcagcgtgc tcagcagcat acttttcaaa gagccggtgc tggtgagttc cgcgggcgcg
     1801 tcgggtggtt ttgaagcgga cggacgcccg tctgtttaca cgcgcgcgtt gagcttgatc
     1861 gaacagggga aaattgacgt ccaaccgctg atcacgcatc ggtatgattc gttagctgac
     1921 gtcgagaagg cgcttgcggg tgagattcgt tcggaagatt acgtgaaggg cgttgtcgta
     1981 ctttgaaggt atcccttttc gttacgtgcc tggtcgatca gctttggagc agcatcggga
     2041 cgagctcggt tgcggtgctg cggcgcgcgg gttgtgaagt tgagtttgac gatcggcaga
     2101 cgtgttgcgg acagcctgcg ttcaataccg gctatcgcaa cgaggcacgg ctggttg
//
LOCUS       DASWTX010001199         4614 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_277141, whole genome shotgun sequence.
ACCESSION   DASWTX010001199 DASWTX010000000
VERSION     DASWTX010001199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4614
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277141"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            218..805
                     /gene="yihA"
                     /locus_tag="VGD38_18265"
     CDS             218..805
                     /gene="yihA"
                     /locus_tag="VGD38_18265"
                     /inference="COORDINATES: protein motif:HMM:TIGR03598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTP-binding protein
                     YihA/YsxC"
                     /protein_id="HEY0730037.1"
                     /translation="MKVTSAEFLKSAFQEADWPRDAKPEIAFLGRSNVGKSSLINSLL
                     SVHGLARTSSTPGRTQSLNFFTINDRFRFVDFPGFGYARVPLNIKSAWGEMATTFLAK
                     RSQLVLSIHLVDSRHEPTKQDLQLHEWLKAYEKPRLIVATKSDKLSNNELRRNLEHIA
                     RVLDDDSVMAFSAKSGRGRNELWRAIESAIRGSSN"
     gene            1156..2553
                     /gene="rho"
                     /locus_tag="VGD38_18270"
     CDS             1156..2553
                     /gene="rho"
                     /locus_tag="VGD38_18270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017492510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HEY0730038.1"
                     /translation="MSQRTRSRAQSSANTNNDASGDDGGATVATAEAPERETREGRDG
                     GKNEGFHNLADLKEMSISKLTQIAKSMDVPGATGMRKQELIFKVLAAQTEKSGLIFSE
                     GVLETLPDGFGFLRAPEYNYLPGPDDIYVSPSQIRKFDLRTGDTVSGQIRPPKEGERY
                     FALIKVEAINFESPDQAREKVFFDNLTPLYPEEQLRMETASDNLSARVIDLVTPLGKG
                     QRGLIVAPPRTGKTMLLQTIANSVTQNHPETTLIVLLIDERPEEVTDMQRSVNGEVIS
                     STFDEPPTRHVQVADMVIEKAKRLVEHKRDVVILLDSITRLARAHNAVVPPSGKILSG
                     GIDSNALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDDVIFEEFKGTGNSEIHL
                     DRRLSDKRLFPAIDLQRSGTRKEELLISKEDLNRIWVMRRVLNPLSPVEQMEVVLERL
                     EKTKSNAEFLASMQS"
     gene            2627..4054
                     /locus_tag="VGD38_18275"
     CDS             2627..4054
                     /locus_tag="VGD38_18275"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: protein motif:HMM:TIGR02095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004373 - glycogen (starch) synthase
                     activity [Evidence IEA];
                     GO_function: GO:0009011 - starch synthase activity
                     [Evidence IEA];
                     GO_process: GO:0005978 - glycogen biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase"
                     /protein_id="HEY0730039.1"
                     /translation="MRVAILTSEAMPFAKTGGLADVSGALPKALTENDVDARLILPLY
                     NQIDRALLNGGSVENVRVEWRGQVHHVRFWFSDAAGASTYLLEAPEFFARPKIYGYQD
                     DHIRFAFFSRAALALLKALDWRADVVHGNDWPCGFAVAELRARRRYDVFFQNTRTLFS
                     LHNVGYQGFFDAGDLWWLGFGDPPERDDFMLDRAASALKAGIIAADALSTVSPRYAHE
                     IQTPEQGHGLDWLLRSRRDRLVGITNGVDYEVWNPETDPHIAANFSADDMSGKRECKI
                     DLLRRFDLPQDVNRPVIAIISRLVGQKGYDLIRMIADPIVRSGAFFIALGAGAQEYED
                     FLQRWHDAAPKQVGIYKGYAGEPLAHQIEAGADMFLMPSLYEPCGLNQMYSMRYGTVP
                     IVRATGGLDDTVQQFDPRTGTGNGFKFGPYEAGALLEKIREALYFYTRPDDWQKLQLN
                     GMLVDNSWTAAAKRYLELYQDILKL"
BASE COUNT         1013 a         1280 c         1319 g         1002 t
ORIGIN      
        1 gatgggctcg ccgcagtttc tggcgcatct cgagaaaaca gtgaaagcga ttccggatta
       61 cgaacggcgc ctcaccgcca tcagagagcg gatggcgaag ctcatcgaga tctggaaaca
      121 gaagaacgct gctcaggcag cagccgccgg taattaagga tttttcaatc cgtgtgcagt
      181 tctgtttcag gcagagttgc acacggattt ttgtgacatg aaggttacca gcgcggagtt
      241 tctgaaaagt gctttccagg aggccgactg gccgcgagac gccaaacccg aaatcgcttt
      301 tctcggccgg tcaaacgtcg gcaaatcgag cctgatcaat tccctgctct cggttcatgg
      361 cctggcgcgc acctcttcga cacccggccg cacgcaatcg ttaaatttct tcacaattaa
      421 cgatcggttc cggttcgtgg actttcccgg ctttgggtac gctcgcgtac cactgaacat
      481 aaaatccgcc tggggcgaga tggccaccac ttttcttgcc aagcgcagcc agcttgtgct
      541 atcaattcac ctcgtagatt cgcgccacga acccacaaaa caggatttgc agcttcacga
      601 gtggcttaaa gcgtatgaga agccacgctt aatagttgcc acaaaatccg ataagctttc
      661 gaacaacgag ttgagaagga atttggagca catcgcccgg gtgctcgatg acgacagcgt
      721 gatggccttc tcggccaaaa gcggccgcgg tcgcaacgag ctttggcgtg caatagagag
      781 cgctattcga ggaagttcaa attaacatct ctgtgtaaca gagaaaaaat tctcgtttgc
      841 gctttttgac agtaagcttg tatcctgaac gaaagtcggc aatccgaaat tctcatcagc
      901 ccccttggtc aacctgagtc ttttgggcca cgcgtatcgg acgggtggca tcaaaaacgt
      961 tactgaattt gccgcgcgcg aaaagttgag gtacagtgca tacaccgttt gagaggaatc
     1021 atattttgcc ccgcgaatga agtgggagac tttatcccac gtctgtcgct ctgaccgcat
     1081 ccatttattc ataatcccac ttgattgaga atcgttacga ccgagtgaag agagattttg
     1141 tagagaaaaa ctgatatgtc acaacgaaca cgttcacgcg ctcaaagcag cgcgaacacg
     1201 aacaacgacg ccagcggaga tgacggcggc gcaacagtcg caaccgccga agctcccgaa
     1261 cgagaaacca gagaaggccg cgacggcggc aagaacgaag gctttcacaa tcttgcggat
     1321 ctgaaggaga tgtcgatctc caagctgacg cagattgcga agagcatgga tgtgcccggc
     1381 gcgaccggta tgcgcaagca ggagctcatc ttcaaagtgc tcgccgcgca gaccgagaag
     1441 agcggactca tcttttccga gggtgtgctc gaaacgctgc ccgacggctt cggctttctc
     1501 cgcgctcctg aatacaacta tctgcccggc ccggacgaca tctatgtctc gccgtcgcag
     1561 attcgcaagt tcgatctccg caccggcgac accgtcagcg gccagattcg tccgccgaag
     1621 gaaggcgaac gttattttgc gttgatcaag gtcgaggcaa tcaacttcga gtcgcctgac
     1681 caggctcgcg agaaagtatt cttcgacaac ctgacgccgc tttatccgga agagcagctc
     1741 agaatggaga ccgcatcgga caacctctcc gcgcgcgtta tcgatctggt gacgccgctc
     1801 ggaaagggtc agcgcggatt gatcgtcgcg ccgccacgca ccggtaagac gatgctgttg
     1861 cagacgatcg ccaactccgt cacgcagaac catcccgaaa caacactgat cgtgttgttg
     1921 atcgatgagc ggccggaaga agtcacggac atgcagcgtt ccgtgaacgg cgaagtcatc
     1981 tcgtcaacgt ttgacgaacc gccgacacgt cacgttcagg tcgcggacat ggtgattgaa
     2041 aaagcgaaac gactcgtcga acacaaacgc gacgtcgtga tcctgctcga ctcgatcacg
     2101 cgtctcgcgc gtgcgcacaa cgcggtcgtg ccgccgagcg gcaagatcct ctcgggcggt
     2161 atcgattcca acgcgttgca gcgtccgaag cgtttcttcg gcgcggcgcg taacatcgaa
     2221 gaaggcggat cgctgaccat catcgccacc gcgctgatcg ataccggttc gcgcatggac
     2281 gacgtgatct tcgaagagtt caagggaacc ggtaactcgg aaatccatct cgaccgccgc
     2341 ctgagcgaca agcgactgtt cccggcaatc gatctccagc gttcgggaac gcgcaaggaa
     2401 gagttgctca tcagcaagga agatctcaat cgcatttggg tgatgaggcg tgtgttgaac
     2461 ccgctgtcgc ccgtcgagca gatggaagtc gtgctcgagc ggttagagaa gaccaagtcg
     2521 aacgccgagt ttctcgcgtc gatgcagagc taagccacag ataaaaggat gggcgcctta
     2581 tccgtgttca tccttttttt ctgccttcat ccccgttcca acaaacatgc gcgtcgcaat
     2641 ccttacgtct gaagctatgc cttttgccaa gactggcggg ctggctgacg tgtctggcgc
     2701 gctaccgaaa gcgcttactg agaacgacgt cgacgcgcgt ttgattctgc cgctttacaa
     2761 tcagatcgat cgcgcgctgc tgaacggtgg ttcggttgag aacgttcgcg ttgagtggcg
     2821 tggtcaggtt catcacgttc gtttctggtt tagcgacgcg gcgggagcat cgacctacct
     2881 tttggaagcg cccgagtttt ttgcacgccc gaagatttac ggttaccagg acgatcacat
     2941 tcgctttgct ttcttctcgc gcgcggcgct cgcgctgctg aaagcgctcg actggcgcgc
     3001 ggacgtggtc catggcaacg attggccgtg cgggtttgcc gttgcggagc tgcgcgcgcg
     3061 ccggcgttac gatgtgttct tccaaaacac ccggacgctc ttctcattac ataacgttgg
     3121 ttatcaggga ttctttgatg cgggcgatct ttggtggctc gggtttggcg atccgcctga
     3181 gcgcgacgac ttcatgctcg atcgcgcggc ttcggcgttg aaggctggaa tcatcgcggc
     3241 cgatgcgttg tcgacagtga gtccgcgata cgcgcatgag attcaaacgc ccgagcaggg
     3301 ccacgggctc gattggctgt tgcggtcgcg gcgcgatcgt ttggtgggga tcaccaacgg
     3361 cgttgattac gaggtctgga acccggaaac agacccgcac atcgccgcga acttttccgc
     3421 ggatgacatg tcggggaaac gcgagtgcaa gatcgatctg ttgcgtcgtt ttgatttgcc
     3481 gcaggacgtt aaccggccgg tgatcgcgat catttcgcgg cttgtgggcc agaagggtta
     3541 cgacctgatt cgcatgattg cggatccgat tgtgcgcagc ggggcgttct tcatcgcgct
     3601 cggcgcgggc gcgcaggagt acgaagattt tctacagcgc tggcacgacg ccgcgccgaa
     3661 gcaagtggga atttataaag gttatgcggg tgagccgttg gcccatcaaa tcgaggccgg
     3721 cgcggacatg tttctgatgc cgtcgttgta cgagccgtgc ggtttgaacc agatgtacag
     3781 catgcgttac ggcacggtgc cgatcgtgcg tgccaccggc ggcctggacg acacggtcca
     3841 acagtttgac ccgcggaccg gaacgggcaa cggtttcaaa tttggaccgt acgaagcggg
     3901 cgctttactt gaaaaaatac gcgaagccct ttacttttac acgcggcctg acgattggca
     3961 aaagctccaa cttaacggaa tgctcgtaga caattcctgg accgccgcgg ccaaacgata
     4021 ccttgagctg taccaggaca tcctgaagct gtgacctgga gttcgccacc tggggttcgc
     4081 caactccttc ggagttatgt aggttcaaga aaatcgtttt ccccagggta tgaaccctgg
     4141 gctgaaattt gcgaactcct tcggagttgc ggtttcgaag gattgttaac gccgctccgc
     4201 ggcgagacgt ttccttgaca tgaacgcttg ggcgcgcggc tcgcacgtta acgccgaccc
     4261 ttggcccgcc aggcgtttcg ttgatgcgaa cgcttgggcg catctcgatc gttaacgccg
     4321 aacccgtggg ccgcgaggcg tttcatttgt cacgagcgct taatcgcgcg gttcgcacgt
     4381 taacgccgaa cccttggggt gcggacgttt catttgtcac gaacgcttaa tcgcgcggtt
     4441 cgcacgtttt aacgccgaag gcgttcgcta attccagccc agggttgctt caaccctggg
     4501 aacgtaataa caaaggagtt cttaacgctg aaagcgttgg ctaactcgac ccattaatga
     4561 acacggctcg caaatctctc cctcttgaaa tgcgtctggc cgcccggcgg attc
//
LOCUS       DASWTX010001200         4087 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_277143, whole genome shotgun sequence.
ACCESSION   DASWTX010001200 DASWTX010000000
VERSION     DASWTX010001200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4087
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277143"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            182..1453
                     /locus_tag="VGD38_18280"
     CDS             182..1453
                     /locus_tag="VGD38_18280"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY0730040.1"
                     /translation="MPSEVAPVVAPQPVTRRRGGMFRALSHRDFRLFWIGAFLSNVGT
                     WMQAVAQGWLVLLLTNSAFWLGLDGFMATAPGFVFTLVGGVFADLIDRRRLLLYTQVV
                     AGVAAMALAMLVWTEVVNRWMVLGFSFVTGCCMALASPSFLAMTYDLVGREDLANAVA
                     MNSTQFQLSRVVGPALAGVAFHLFGLAGCFFANGVSFVAVVAALWVVRPERVTTAAHS
                     VRDRRALWRDLTDGFRYVRSRPRVSALLLLSGINSLFGAPYFTLVPIYARNIFNLGET
                     GLALMMGTSGLGAFIGALLVAYLGDFRRKGWLVLGGSVAFGLFIASFALASTLWLSLV
                     FLFGVGFSVVVCVANINTLLQKLVTDQMRGRVMSMFILSFMGTMPIGNIVAGAASNQF
                     GPQYTLAVGGIIVALVATGVAIFNKRLRDLH"
     gene            1530..3830
                     /locus_tag="VGD38_18285"
     CDS             1530..3830
                     /locus_tag="VGD38_18285"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT and VWA domain-containing protein"
                     /protein_id="HEY0730041.1"
                     /translation="MPVRTSLVRVLVLFAICLGITSIASAQGVIVPGPCRRCPTPPIE
                     GRPLNLPRALPVKSIKIDTKISSQVATTHVEQVFRNNTHFTLEGTYFFPIPETASIVE
                     FAIWEGDKRLVGEVRTREEARRIYDEIVRRQRDPGLLEYAGKDLFQASIFPIPPNSDK
                     KLEITYTQVARAEGGTVSYRYPLGTGRQMVEIGSVSGRVEVESREPVRNVYSPTHNID
                     VKRANDRRSVVSFETANANQGQDFQLFYTISKEDFGLTLLTHREPGRDGYFLLMISPK
                     DDWSEQEYSAKDVVFVVDTSGSMAEEGKMEKARAALLYGVRILRPQDRFNVISFAGEE
                     RLMEAGLIAADDKGRARGEAFVKSLKPVGGTNINGSLLASLAQFTDDNRERPKIIVFM
                     TDGLPTVGTTNVTQIVDNARKASKPGVRLFTFGVGYDVNTALLDKLAAENGGMADYVE
                     PKEDIEVKVGSFFTKVNYPVLTNLKLDMGGARTDLVYPRAIPDLFRGSQVTLIGRYTG
                     DANLESVRLTLSGQSGSTARTYHYDNLAFPLRSENNDYLPRLWATRRVGWLMEQVRSN
                     GEQKELRDEIVDLGTRYGIVTPYTSYLAIDGAEVSQTTNLFSNRPAQRRTSSGNATGR
                     RYESNSTGAVDANAPPPPSPTPQSLYTIPPNAPSTVTLSTGVAAVQESKRAREQQDAA
                     KLKEETRTDAVQRVGGKTFYLVDGVWTDSEFKAETKLPETALTFGSDEYFAVLKQHPK
                     LASFFSLGERVVVVFEGRVYRVSGSA"
     gene            3864..>4087
                     /locus_tag="VGD38_18290"
     CDS             3864..>4087
                     /locus_tag="VGD38_18290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730042.1"
                     /translation="MNSRAPSYVSIFAAVCVLFTIAGSAKAQTSWTPIKLNTGGNDLN
                     TVYFIDSKRGWVGGDGGYLSRTDDGGQTWVR"
BASE COUNT          785 a         1203 c         1251 g          848 t
ORIGIN      
        1 ccgaaccagg ggcagagccc caatgtttta taagcagttg gacggcgagg catagcctcg
       61 cctcacatcc ggcggcggag ccgagtgagc atagcgccga gtaaggagag gcggcgcagc
      121 cgagcagagg cggcggagtc ggtaagcaga gctggtaaag ggctctagtg aattaaacga
      181 aatgcccagt gaagttgctc ccgtagtcgc accccagcct gtcaccaggc ggcgcggtgg
      241 aatgttccgc gcgctctcgc accgcgactt ccgcctcttc tggatcggag cttttctttc
      301 aaacgtcggc acgtggatgc aggcggtggc ccagggctgg ctcgtgctgc tactcaccaa
      361 ctctgctttc tggctcggcc ttgatggttt catggccaca gcgccgggat ttgtgttcac
      421 actcgtcggc ggtgttttcg ccgacctgat cgatcgccgc cggctgttgc tctacacaca
      481 agtcgtcgcc ggtgtcgctg cgatggcgct cgcgatgctc gtgtggacgg aggtcgtcaa
      541 tcgctggatg gtcctgggct tttcgtttgt caccggctgt tgcatggcgc tggcgagccc
      601 gtcgtttctc gccatgactt acgatctcgt cggtcgcgaa gacctcgcca acgcggtcgc
      661 gatgaactca acgcagtttc aactctcgcg cgtggttgga ccagcgttgg ccggcgtggc
      721 gtttcatcta ttcggactgg cgggatgttt ctttgctaac ggcgtgtcgt tcgtcgcggt
      781 cgtagcggcg ctttgggtcg tccgtccgga acgcgtcaca acagcggccc actccgtcag
      841 agatcgccgc gccctctggc gcgatctcac agacggcttt cgctatgttc gcagccggcc
      901 acgagtctcg gcgctgttgt tgctgtccgg catcaacagc ctcttcggcg cgccctattt
      961 cacactcgtt ccgatctacg cgcgcaacat cttcaacctc ggcgaaaccg gactcgcgct
     1021 gatgatggga acttccggcc tcggcgcgtt catcggcgct ctgctggtcg cttatctcgg
     1081 cgactttcgt cgtaaaggct ggctcgtgct tggcggctcc gttgctttcg gcctgttcat
     1141 tgccagtttc gccctcgcgt caaccttgtg gttgtcgctg gtgttcctgt tcggcgtcgg
     1201 gttttcggtg gtcgtttgcg tcgcaaacat caacaccctg ctccagaaac tggtcaccga
     1261 ccagatgcgc gggcgcgtga tgagcatgtt tatcctctcg ttcatgggta cgatgcccat
     1321 cggcaacatc gtcgcgggcg cggcctcgaa ccagtttggc ccccaataca ctttggccgt
     1381 tggcggcatc atagtagcgc tcgtggccac cggagtcgcg attttcaaca aacgcctccg
     1441 cgacttgcat tgaactttta ggcgcaagaa gctccccagc ctgccgttct agctccgtca
     1501 ttgggttaac ttttcatctg gagatgcgta tgccagtccg aaccagccta gtccgcgtcc
     1561 tcgtcctctt tgcaatttgt ttgggaatca cgtcgatcgc cagcgcccag ggcgtcatcg
     1621 tgccgggccc atgccgccgc tgcccgacac cgccgatcga gggtcgcccg ttgaacctgc
     1681 cgcgcgcact gccggtcaag tccatcaaga tcgacacgaa aatcagctcc caggtcgcga
     1741 cgacgcacgt cgagcaggtg tttcgtaaca acacccactt cacgctcgaa ggcacctact
     1801 tcttcccgat tcccgagacc gcctcgattg tcgagtttgc gatttgggaa ggcgacaagc
     1861 ggctggtcgg cgaagtgagg acgcgcgaag aagcgcggcg catctacgac gagatcgtgc
     1921 ggcgccagcg cgatccgggt ctgctcgaat acgccggcaa agacctgttt caggcgagca
     1981 tctttcccat tccaccgaat tccgacaaga agctggagat tacttacacg caggtagcgc
     2041 gtgctgaagg aggaactgtt tcgtatcgct atccactcgg aaccggtcgc cagatggtgg
     2101 agatcggttc cgtttccggc cgtgtcgaag tcgagagcag ggaaccggtg cgcaacgtct
     2161 attcgccgac gcacaacatc gacgtgaagc gcgcgaacga ccggcgttcg gtcgtttcgt
     2221 ttgagactgc caacgccaac caggggcagg actttcaact cttctacacc atttccaaag
     2281 aagacttcgg tctgacgttg ttgacgcatc gcgaacccgg cagagacggc tacttcctgc
     2341 tgatgatctc gccgaaagat gattggtcgg agcaggagta ctcggcgaaa gacgtcgttt
     2401 ttgtggtcga cacgtcgggg tcgatggccg aggaaggcaa gatggaaaag gcgcgcgcgg
     2461 ctttgctcta cggcgtgcgc attttgcggc cgcaggatcg tttcaacgtg atctcgtttg
     2521 cgggcgaaga acgtttgatg gaagcgggtt tgatcgccgc tgacgacaag ggccgcgcac
     2581 gcggcgaggc attcgtcaaa agtttgaagc cggttggtgg aacgaacatc aacggctcgc
     2641 tgctggcgtc gctggcccag tttactgacg acaatcgcga gcgtccgaag atcatcgtgt
     2701 tcatgactga cggtttgccg acggtgggaa caaccaacgt cacacagatc gtcgacaacg
     2761 cgcgcaaggc gagcaagccc ggcgtgcggt tgtttacgtt tggcgtcggt tacgacgtca
     2821 acacggcgct gctcgacaag ctggcggccg aaaacggcgg catggcggat tacgtcgagc
     2881 cgaaggaaga tatcgaggtg aaggtgggaa gcttcttcac gaaagtgaac tatccggtgt
     2941 tgacgaacct gaagctcgac atgggcggcg cgcgaacgga cctagtgtat ccgcgcgcga
     3001 ttcccgatct gtttcgtggt tcgcaagtga ccctgattgg acgttacacc ggtgatgcga
     3061 atctcgagtc agtgcggctg acgttgagcg gtcaatcagg cagcacggcc cgcacctatc
     3121 actacgacaa tcttgctttc ccgctgcgca gtgagaacaa cgactacctg ccgcgcttgt
     3181 gggcgacgcg ccgcgtgggt tggttgatgg agcaggtgcg gagcaatggc gagcagaagg
     3241 aactgcgtga cgagattgtc gatctcggaa cgcgctatgg aatcgtcacg ccttacacgt
     3301 catacctggc gatcgacggc gcagaagtga gtcagacgac gaatctcttc tcgaatcgtc
     3361 cggcgcaacg aagaaccagc agtggtaatg ccactggccg gcggtacgag tcgaactcca
     3421 ctggagctgt cgacgccaac gcgccgccgc cgcccagccc aaccccacag tctctttaca
     3481 caattccacc caacgccccg tcgacggtca ctctcagcac cggagtagcg gcagtgcagg
     3541 agagcaagcg tgcgcgcgag cagcaggatg ccgcgaagct gaaagaggag acgcgaaccg
     3601 acgcggtgca gcgtgtcggg ggcaagacgt tctatctggt cgacggcgta tggaccgact
     3661 cggagttcaa agcggagacc aagcttcccg aaaccgcgtt gaccttcggc agcgacgaat
     3721 acttcgccgt gctgaagcag catccgaaac tggcgagttt cttctcgctc ggcgaacgcg
     3781 tggtggtcgt ctttgaagga cgcgtttacc gcgtttccgg atctgcgtaa cgggcgcaat
     3841 ttgtggtaag gtaaatgcca caaatgaaca gccgagcccc aagctacgtc agtattttcg
     3901 ccgcggtgtg tgttctgttc acgattgcgg ggtccgcgaa agctcaaacg agctggaccc
     3961 ccatcaagct caacacgggc gggaacgatc tcaacaccgt ctacttcatc gacagcaaac
     4021 gcggttgggt tggcggcgat ggcgggtacc tgagccgcac ggacgacggc ggccaaacct
     4081 gggtacg
//
LOCUS       DASWTX010001201         2059 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_144536, whole genome shotgun sequence.
ACCESSION   DASWTX010001201 DASWTX010000000
VERSION     DASWTX010001201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2059
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144536"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(78..1421)
                     /locus_tag="VGD38_18295"
     CDS             complement(78..1421)
                     /locus_tag="VGD38_18295"
                     /inference="COORDINATES: protein motif:HMM:NF013791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0070069 - cytochrome complex [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019646 - aerobic electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HEY0730043.1"
                     /translation="MEDLLAARSQMAMSLAFHIIFAAIGIAMPLLMIIAEWRWLRTKD
                     GIYLTLAQRWAKGTAILFAVGAVSGTVLSFELGLLWPGFMGFAGSIIGMPFSLEGFAF
                     FTEAIFLGIYLYGWKRVPPRAHLFAGFMVALSGALSGIFVVIANAWMNAPTGFRLVDG
                     KPVDIDPIAAMMNPAAFPQTLHMTLAAYAATGFVVAGIHAFMLRREPDNRFHRAALAI
                     ALLVGGVSAILQPLSGDLLAKRVAQTQPVKLAAFEGHFETERGAAFRIGGIPDEQARE
                     TRYAIELPYVLSILAYGDPNAVVRGLNDFPADTHPPVAIVHIAFQIMVACGVAMMLLA
                     LWAAWRYWRGRRKQTWLDSKWFLRAIIAAAPLGFIAIETGWTVTEVGRQPWIIYGVMR
                     TSEAVTPMPGLVVPFLTFTVLYIFLAIITVFLLLRQVAASPKDPEPRPEETRVAA"
     gene            complement(1500..>2059)
                     /locus_tag="VGD38_18300"
     CDS             complement(1500..>2059)
                     /locus_tag="VGD38_18300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730044.1"
                     /translation="KRLADEQLSLALNINAKANPRISAVCFLRLAQAGLLMETTIPDV
                     RFFLDQFQKISDRVEHAFCHELASDIREQLERKGPAFFVDVRQRGLTVAFWEDELKDY
                     LTREAINRIVDNMSVPLSGDAGTPKRRGRGRKTTLKGQFIKDLVSHTGYSPEWARSVA
                     GNYEKEFLDKLRATGKYVGDDGEGS"
BASE COUNT          478 a          641 c          546 g          394 t
ORIGIN      
        1 caccgccgcc gtaatccgcg ccgccgagaa gcgcgtagag cacgagcgac gcgaccatca
       61 cgcccgcgat aatcgtctca agcggcaacg cgtgtctcct ccggccgcgg ctcaggatct
      121 ttcggactcg ccgccacctg ccgcagtaac aggaaaactg taatgattgc gagaaagatg
      181 tagagcacgg tgaacgtcag aaacggcacg accaatcccg gcatcggcgt caccgcttca
      241 ctcgtgcgca tcacgccata aatgatccac ggctgccggc ccacttcagt cacggtccaa
      301 cccgtctcga tcgcgatgaa cccgagcggc gccgcagcga tgatcgcgcg caggaaccat
      361 ttcgaatcca gccacgtctg cttacgccgt ccgcgccagt atcgccacgc ggcccaaagc
      421 gccagcagca tcatcgccac accacacgcg accatgatct gaaacgcgat gtgtacgatc
      481 gccaccggcg gatgcgtgtc agcgggaaaa tcattcaagc cgcgcacgac cgcattcgga
      541 tcgccataag ccagtatgct caacacataa ggaagctcga tcgcgtaacg cgtctcgcgt
      601 gcttgttcat ccggaatgcc gccaatgcga aacgccgcgc ctcgttctgt ctcaaagtgt
      661 ccttcaaacg ccgcgagctt caccggctgc gtttgcgcaa ctctcttcgc gagcagatcg
      721 ccactcaacg gttgcaggat cgcactcacg ccgccaacca gcagcgcaat cgccagcgca
      781 gcacgatgaa aacgattgtc cggctcgcgt ctgagcataa aggcgtgaat acctgcgacg
      841 acaaatcccg tcgcggcata cgcggcaagc gtcatgtgaa gtgtttgcgg aaaggcagcc
      901 ggattcatca tcgccgcgat cggatcgatg tcgacaggct tgccgtcgac gagtcgaaaa
      961 ccagtcggcg cgttcatcca cgcattcgca atgacgacga aaattcccga caacgcgccg
     1021 ctcaaagcga ccatgaaacc ggcaaacagg tgcgcgcgcg gaggcacacg cttccagccg
     1081 taaagataaa ttcctaaaaa gattgcttcg gtgaagaacg caaagccttc gagtgaaaac
     1141 ggcatgccga tgatcgatcc ggcaaacccc atgaaccccg gccacaacag cccgagctca
     1201 aacgaaagca cggttcccga aaccgcgccg acggcaaaca ggatcgccgt gcctttggcc
     1261 caacgttgcg cgagcgtgag atagatgccg tccttcgtgc gcagccaacg ccactcggca
     1321 ataatcatca acagcggcat cgcgataccg atggccgcaa agatgatgtg aaaagcgagc
     1381 gacatcgcca tctgcgagcg cgccgctagt aggtcttcca tgatcgtgtg cagccatcct
     1441 actaagaccg aagtcgcgct tcaacgccgt gagtgcagca gaggtggaat ttgagcggct
     1501 caactaccct cgccgtcgtc gccgacgtat tttccagtcg ccctgagctt gtcaagaaac
     1561 tctttctcgt aattcccggc gacagatcgt gcccactcgg ggctataccc ggtgtgactg
     1621 actaagtctt tgatgaactg gcccttcaag gttgttttcc tgccacgtcc tcgccgctta
     1681 ggcgtaccgg cgtctcctga taatgggacg ctcatgttgt ctactattcg attgatagct
     1741 tctcgagtta agtagtcttt gagctcgtcc tcccagaaag caacggtaag acctcgttgg
     1801 cgtacatcga cgaaaaaggc gggtccttta cgctccaatt gctcgcgtat gtccgatgcg
     1861 agttcatggc agaaggcgtg ttccactcga tcgctgatct tctgaaactg gtccagaaag
     1921 aagcggacat cgggaatggt ggtttccatt aacaatccgg cttgggccag tctcaaaaaa
     1981 cataccgcgc tgattctggg attcgctttc gcgttgatgt tcagagcgag gctgagttgt
     2041 tcgtccgcca gtcgcttgt
//
LOCUS       DASWTX010001202         3135 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_187753, whole genome shotgun sequence.
ACCESSION   DASWTX010001202 DASWTX010000000
VERSION     DASWTX010001202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3135
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187753"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..318
                     /locus_tag="VGD38_18305"
     CDS             <1..318
                     /locus_tag="VGD38_18305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate ABC transporter ATP-binding protein"
                     /protein_id="HEY0730045.1"
                     /translation="VNNPRVVLMDEPFGALDPQTRWGMQSLLLEISRAENNTILFVTH
                     DVSEAVYLADTIYVLSARPAQIRHRIAVPAFPVRDIALKSASEFRAVEKQLLDLIYAP
                     AKS"
     gene            334..1260
                     /locus_tag="VGD38_18310"
     CDS             334..1260
                     /locus_tag="VGD38_18310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730046.1"
                     /translation="MGTTGKQGFTKPPQPAMRKDGVPVNVTPLRDDPIAATQAFVRQK
                     VHEKRSYLKAAFANPYNLSLLAGGLIASAVTLNPLLAIVTLGLEVLWVVNAPGSKKLR
                     EWLWDPQFEAAEQKELQELRAKQLHNLDEVDRERVVTLIARQHEINALASQNPSFTGE
                     LLRTELTKTDRLVEAFIEMATTCSRYEAYLDSINLSELERDRRRWEAIVNEQDIHTSQ
                     ADIAAKNLTVIMKRFEKMKEINAYLTTARGQLDLIENSFQLIADQIVTMQSPQELTGQ
                     LDELLDGVESIKQTAADTERMLNPTGMKEFEL"
     gene            1257..3110
                     /locus_tag="VGD38_18315"
     CDS             1257..3110
                     /locus_tag="VGD38_18315"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY0730047.1"
                     /translation="MSESRTLPAWAEDLRRRYLRGEASMFVLHGNVYDVVLCNRKMMA
                     LTEFLTDVLLKDSKDTIAVYNVATGTRFSKHSDNATAVEDLLVATDKSRIFSAFERLL
                     IGSTRTAVIMEYAEAIAPAGDPNFQGESDRAAIVTLHRWSALPEIERGDNVVLLISEN
                     LTELAPKLISNPKVAVVEVPMPDHATRREAAMLSDTRLTEKDGERYAGITAGLKAIQI
                     ASILTPQPSAEEDFADREAFITGLLGGGPDAAGRAHKLAALTSNMNRDEIKELVAPTA
                     VVPAPDASVPSPIERARKETDRLIAKRKREIIERECFGLVEFVEPSHGFEVVGGMEEV
                     KKDLLVIAESIREGRTSRVPMGILFTGPMGTGKTFVAEAFAKQCGLTTIKLKNFRSKW
                     VGATEGNLEKILNVIRAIGQVVVIIDEGDRAFGNTDGEGDGGTSSRVIARIKEFMSDT
                     SNRGRILFLVMTNRPDKLDVDLKRAGRLDRKIPFLYVQTPEEVELVARALLKKNKIKT
                     DVDLAAIRDDFSTKLIGYSNADIEAVLLLANEDAARESGSDAPVLASHFERAAIDYFP
                     SRDVELLEYMELLAVFESSSRRLLPAKYASLTPEELDTRLRQLRAIVGSRR"
BASE COUNT          680 a          853 c          963 g          639 t
ORIGIN      
        1 gtcaacaatc cgcgtgttgt gttgatggac gaaccattcg gcgcgctcga tccgcaaacg
       61 cgctggggca tgcagagtct gctgctcgag atctcgcgcg ctgagaacaa cacgattctg
      121 ttcgtcacgc acgacgtttc cgaggcggtc tatttggctg acacgatcta cgtgctgtcg
      181 gcgcggcccg cgcagattcg tcaccggatc gcggtgcccg cgtttcctgt tcgcgacatt
      241 gcgctaaaat cggcctcgga attccgggcc gtggagaagc agttgctcga tctgatctac
      301 gcgcccgcca agtcgtaacc gttacgatct cttatgggga caaccggaaa gcagggtttc
      361 acgaagccgc cacagccggc catgcgcaag gatggtgtgc ccgtgaacgt cacgccgctg
      421 cgcgacgatc cgatcgcggc gacccaggct ttcgtccggc aaaaggttca cgagaagcgc
      481 tcgtatctca aagccgcgtt tgctaatcct tacaacctgt cgttactcgc gggcgggctg
      541 atcgcttcgg cagtcacgct caatccgttg ctcgcgatcg tcacgttggg attggaagtt
      601 ttgtgggtgg tgaacgcgcc gggttcgaag aagctgcgcg agtggctttg ggatccgcag
      661 tttgaagcgg cggagcagaa agaacttcag gagctgcgcg cgaagcagct tcacaatctc
      721 gacgaagtcg atcgcgagcg cgtggtaacg ctgatcgcgc ggcagcatga gatcaacgca
      781 ctcgcgtcgc agaacccttc gttcaccggc gaactgctgc gcactgagtt gaccaagacc
      841 gatcgcctgg tcgaggcgtt catcgagatg gcgacgacgt gcagccgtta cgaggcttat
      901 ctcgattcga tcaacctgag cgagcttgaa agagatcggc gccgttggga agcaatcgtg
      961 aacgagcagg acatccatac gtcgcaagcc gatatcgctg cgaagaacct caccgtgatt
     1021 atgaaacgtt tcgagaagat gaaagagatc aatgcgtacc tgactaccgc gcgtgggcaa
     1081 ttggatttga tcgagaactc gtttcagttg attgcggatc aaatcgtgac gatgcagtcg
     1141 ccgcaggagt tgacgggaca gttagacgaa ctgcttgacg gtgtcgagtc gatcaaacag
     1201 acggcggctg ataccgaacg catgttgaat ccgacgggta tgaaggaatt tgagctatga
     1261 gtgagtcgcg cacgcttccc gcctgggctg aagacttgcg gcgccgctat ctgcgcggcg
     1321 aggcgtcgat gtttgtgttg cacggcaatg tttatgacgt tgtgttgtgc aaccgcaaga
     1381 tgatggcgct gacggaattt ttgacggacg tgttgctcaa ggattcgaag gacacgatcg
     1441 cggtttataa cgtcgccacc ggcacgcgct tctcgaaaca ctctgacaac gcgaccgcgg
     1501 ttgaggatct gcttgtagcc acggataaga gccggatctt ttccgctttc gaacggctgt
     1561 tgattggttc tacaaggact gccgtgatca tggagtatgc ggaagcgatc gcgcccgcgg
     1621 gcgatccaaa cttccagggc gagtcggatc gcgccgcgat cgtgacgctg catcgctggt
     1681 cggcgctgcc ggagatcgag cgtggcgata acgtcgtgtt gctgatctct gaaaatctca
     1741 ccgaactagc gccgaaactg atctcgaatc caaaggttgc ggtggttgaa gtgccgatgc
     1801 cggatcacgc gacgcggcgc gaagccgcga tgctctcgga cacgcgtttg accgagaaag
     1861 acggcgaacg ttatgcggga atcacggccg gtctgaaagc gatccagatc gcgtcgatac
     1921 tgacgccgca accttcggcc gaagaagatt tcgcagatcg agaagcgttc atcaccggat
     1981 tgcttggcgg tggaccagac gcggccggac gtgcgcacaa gctcgccgcg ctcacgagca
     2041 acatgaatcg cgacgagatc aaggagctcg ttgcgccgac ggcggttgtt cctgcgcccg
     2101 atgcttcggt gccgagtcca atcgaacgcg cgcgcaaaga aaccgatcgg ctgattgcga
     2161 aacgcaaacg cgagattatc gagcgcgagt gttttgggtt ggtggagttt gtcgagccgt
     2221 cgcacgggtt tgaagttgtc ggcggcatgg aagaagtgaa gaaagatctg ctcgtgatcg
     2281 ccgagagcat tcgcgaaggc cgcactagcc gcgtgccgat gggcatactt tttactggtc
     2341 caatgggcac gggcaagacg ttcgttgcgg aagcgtttgc gaaacagtgc gggctcacga
     2401 cgattaagtt gaagaacttt cgttcgaagt gggttggcgc gacggaaggc aatctcgaaa
     2461 agatcctgaa cgtgatacgc gcgattgggc aggtggtggt gatcattgac gaaggcgatc
     2521 gtgcgtttgg caacacggat ggggaagggg acggcggcac ctcgtcgcgc gtgattgcgc
     2581 gcatcaagga gttcatgtcc gacacgtcga accgcggccg catcctgttt ctggtgatga
     2641 ccaaccggcc cgacaaactc gacgtcgacc tgaagcgtgc ggggcgtctc gatcgcaaga
     2701 ttccctttct ctacgtgcag acgccggaag aggtcgagct ggtcgcacgc gcgttgttga
     2761 agaagaacaa gatcaaaacc gacgtcgatc tcgccgccat tcgcgatgat ttttccacca
     2821 aactcatcgg ctactcgaat gccgacatcg aagcagtatt attgttagcg aacgaagacg
     2881 cggcgcgcga atccggcagc gacgcccccg tgctcgcctc tcacttcgag cgcgcagcca
     2941 tcgattactt cccgagccgc gacgttgaat tattggaata catggaactc cttgcggtct
     3001 tcgaatcctc gagccgtcgc ttattacctg ccaaatacgc ctccctaacc cccgaagaac
     3061 tcgacacccg tttgcgccag ttgcgggcga tagtcggcag ccgccgttag tgccacagat
     3121 ctacacgaac aaaca
//
LOCUS       DASWTX010001203         3664 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_277190, whole genome shotgun sequence.
ACCESSION   DASWTX010001203 DASWTX010000000
VERSION     DASWTX010001203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3664
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277190"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(11..1261)
                     /locus_tag="VGD38_18320"
     CDS             complement(11..1261)
                     /locus_tag="VGD38_18320"
                     /inference="COORDINATES: protein motif:HMM:NF022818.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(764..766),aa:Sec)
                     /transl_table=11
                     /product="DUF3179 domain-containing (seleno)protein"
                     /protein_id="HEY0730048.1"
                     /translation="MAKNKRRKLVWLLLLVLVIAVIVFVLTPMYLIMPFKPQTPRIMA
                     ISYFMRTWSPLVSIVASLVIVTLMVRLWLGGRWWSRAILVILLLPVLGATWLAQQNHF
                     EWMFNPLPNPLYARIAEANFVKDNERVMAITVNGESVAYPITLMAYHHVLGDTVGGTP
                     IVATYUTLCHTGLVWESTVDGRVLHFRLAGINNQNFIMRDDETGTWWQQVTGKALHGP
                     LQGRQLKPVFHDELSFAIWKKERPDGRVLKPDERIAALGNRYEVDWEPQVARMRVVEG
                     TDVDKRLPPRTLVVGIEIVGKSKAYPLSALQKQSPIIDTLGSVPIVVMLGEDGRSVRA
                     FERIVDGRKLEIFRKTDGPENTGQAPFQLIDAETNSTWNFEGKAISGPLAGRELKKVF
                     VLEDYWFDWRLYHPNTSIYSIGAQ"
     gene            complement(1261..1734)
                     /locus_tag="VGD38_18325"
     CDS             complement(1261..1734)
                     /locus_tag="VGD38_18325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730049.1"
                     /translation="MRTVAAHEGPPYPLFVDQKVSPYLVSVWTDPDVGEALFFVIISP
                     EQGAQLPADLRVQVGVQPVSGRLQEAFYTGERENLREQVQYRAVVQFDAEELWRVRVR
                     LESAQGNAETMATVEATPPGYGRWDLLVYLLPFLGIGVLWAIAMVRKFKRRTGDN"
     gene            complement(1794..3215)
                     /locus_tag="VGD38_18330"
     CDS             complement(1794..3215)
                     /locus_tag="VGD38_18330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730050.1"
                     /translation="MDLLRLPLLGGLLKWRHARTLLQIPLFVISVAMILHGLFGPQLA
                     PRNLATTLTWVHFRGALILVLLLAGNFFCLACPFMLVRNFARKFFRPARNWPRQLRNK
                     WLSIGLFVAMLFVYEWLDLWASPWWTAWLIVTYFAGALVIDSVFKHATFCKYVCPIGQ
                     FNFAASTVSPMEVAVRDQDVCTRCTTKDCIRGVREPAAPLVVLQRGCELALFQPRKVG
                     NIDCTFCLDCVQACPHDNVGIMSRVPATELANDVMRSGLGFLSRRKDLAALVIVFAFG
                     ALLNAFAMVSPVYALEQWLARVLGVTTEAPVLAIVFGLFLVVEPLVLVGLAAWMTRVL
                     SRRKGSLAAVAVRYSYSLVPVGFGIWLAHYSFHFLTGLFTLIPVTQGAVADLGAAILG
                     QPQWTLVGLPTNVVEVFEVGFILLGLFGSLLVSYLLAATDRIVQPVRVFIPWAVLSLL
                     IAAAALWVMSQSMEMRGLVLGSG"
     gene            complement(3269..3628)
                     /locus_tag="VGD38_18335"
     CDS             complement(3269..3628)
                     /locus_tag="VGD38_18335"
                     /inference="COORDINATES: protein motif:HMM:NF017559.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HEY0730051.1"
                     /translation="MPFVLLCGCRQQNRTTASNLTVSYEVSPLPARVGDVTITIKIKD
                     GSNEPVAGARIKLEGNMSHAGMAPVFAEAKEIGPGQYRTNMNLSMAGDWQVLVRLTLP
                     DGREMDQQFEIKEVAPA"
BASE COUNT          888 a         1161 c          955 g          660 t
ORIGIN      
        1 gaatccccat ttactgggcg ccgatcgagt agatcgacgt gtttgggtga tagagacgcc
       61 agtcgaacca gtagtcttcg agaacgaaga ccttcttcag ttcacgtccg gcgagtgggc
      121 cgctgatggc tttgccttca aagttccagg tgctgttggt ttcggcatcg atcagttgaa
      181 acggcgcttg ccccgtattc tccggcccgt cggttttgcg gaagatctcg agcttgcggc
      241 cgtcgacgat tcgctcgaag gcgcgtaccg aacgaccgtc ctcacccaac atgaccacga
      301 ttggaaccga tcccagcgta tctatgatcg ggctttgctt ctgcaacgcg gagagcggat
      361 aagcctttga cttgccgaca atctcgatac ccacgactaa agttcgcggc ggcagacgct
      421 tgtcgacgtc ggtgccttcg acgacgcgca tgcgcgcgac ttgcggttcc cagtccactt
      481 cgtaacggtt gcccaaagcc gcgatcctct cgtcgggctt cagcacgcgg ccgtccggcc
      541 gctctttctt ccagatcgca aacgataact catcatgaaa caccggcttg agctgccgtc
      601 cctgcaatgg accatgaagc gctttgcccg tgacctgttg ccaccacgtc ccagtctcat
      661 cgtcgcgcat gatgaagttc tggttattaa tgcctgctag ccggaagtgc agcacgcgcc
      721 catcgactgt cgattcccac accagaccgg tgtgacagag cgttcaatac gtggccacga
      781 tcggcgtgcc gccaaccgtg tcccccaaca cgtggtgata ggccatcagc gtgatcggat
      841 acgcgaccga ctctccgttc acagtgatcg ccatcacgcg ctcattatct ttgacgaagt
      901 ttgcttccgc gatccgcgca tacaacggat tcggcagcgg attgaacatc cactcgaaat
      961 gattttgttg tgcgagccac gtcgcgccga gcaccggcaa caagagaatc acgagaatcg
     1021 cgcggctcca ccaacggccg cccagccaca ggcggaccat cagcgtcacg atcacgagcg
     1081 aggcgacgat actcaccagc ggcgaccaag ttcgcatgaa atacgaaatc gccatgatgc
     1141 gcggcgtctg cggcttgaaa ggcatgatca ggtacatcgg cgtcagcaca aagacgatca
     1201 ccgcaatcac gagcactaag agcagaagcc acacgagttt tcgccgcttg tttttagcca
     1261 tcaattgtct ccagttcgcc gtttgaactt tcgcaccatc gctatcgccc acaaaactcc
     1321 gatgccgagg aacggcagca ggtaaaccag caagtcccaa cgcccgtagc ccggcggtgt
     1381 agcttccaca gtcgccatcg tttcggcgtt tccctgcgcg ctctcgagcc gcacacgcac
     1441 acgccacagt tcctccgcgt cgaattgcac cacggcgcga tactgcacct gctcccgcaa
     1501 gttctcacgt tcgccggtat aaaaagcttc ctgcaaccgt ccgctgacgg gttgtacgcc
     1561 gacttgcacg cgcaaatccg caggaagctg agcgccctgt tccgggctga taattacaaa
     1621 gaacaacgcc tcgccgacgt cgggatccgt ccagaccgaa accaggtaag gcgacacctt
     1681 ttggtcgaca aacagcggat aaggcgggcc ttcgtgggca gcgacagttc tcaaaaataa
     1741 aaatatgaga accagcggca gcgcgtgtct gaaccctcgt gaactcattt ttctcaaccg
     1801 ctgccaagaa ccagaccacg catttccatc gactgcgaca tcacccacag cgccgcggcg
     1861 gcgatgagca gcgaaagcac ggcccagggg ataaagacgc gcaccggctg gactatccga
     1921 tccgtcgcgg ccaatagata gctgaccaat aacgatccga agagaccgag aagaataaac
     1981 ccgacctcaa aaacttccac gacattcgtc ggcaaaccga ccagcgtcca ctgcggctga
     2041 ccaagaatcg cggcgccaag atcggcaacc gccccctgcg tcacgggaat caacgtgaac
     2101 agtccagtga ggaaatgaaa actgtaatgc gccagccaaa ttccaaagcc gactgggacc
     2161 aacgaatacg agtagcgcac ggcgacagcc gcgagcgatc ctttcctgcg actcaagact
     2221 cgcgtcatcc acgcggcgag cccaaccagt accagcggtt cgacgacgag aaacaaccca
     2281 aacacgatcg ccagcaccgg cgcttcagtc gtaacaccca acacgcgcgc cagccattgt
     2341 tccaacgcgt aaaccggact gaccatcgcg aacgcgttga gcagcgcgcc aaaagcaaaa
     2401 acgattacga gcgccgcgag atctttgcgc ctcgatagaa agccgaggcc cgaacgcatc
     2461 acgtcgttcg ccaactcggt cgcgggcaca cggctcatga tcccgacatt gtcatgcgga
     2521 cacgcctgca cgcagtccaa acaaaacgtg caatcgatgt tgccgacctt acgcggctga
     2581 aacaaagcca gctcacaacc gcgctgtagc acaacgagcg gcgccgcggg ttcgcgcacg
     2641 ccgcggatgc aatccttagt cgtacagcgc gtgcaaacat cctgatcgcg aaccgcgact
     2701 tccatcggcg agacagtcga agcggcaaaa ttaaactgcc cgatcgggca aacgtactta
     2761 caaaacgtcg cgtgtttgaa aaccgaatcg atcacgagcg cgcccgcgaa gtacgtgacg
     2821 atcaaccacg cagtccacca tggcgaagcc cacagatcga gccactcgta aacaaaaagc
     2881 atcgccacga agagaccgat cgagagccac ttgttgcgca gttggcgcgg ccagtttcgt
     2941 gccggtcgaa agaacttgcg cgcgaagttt cgcaccagca tgaacgggca cgcgagacaa
     3001 aagaagtttc ccgccagcag caaaaccagg atcagcgcgc cacgaaagtg tacccacgtc
     3061 aacgtcgtcg ccagattgcg cggcgccaac tgcggaccaa aaagcccgtg caggatcatc
     3121 gcgacgctga tgacgaacaa cggaatctgc agcagcgtgc gcgcatgccg ccacttgagc
     3181 aaaccgccaa gcaacggcag acgcaaaaga tccaaaccgg gctgcgcttt gcttgtggga
     3241 tttacctgga acacttgaac cggctgactc aggctggcgc gacttccttg atttcaaact
     3301 gctggtccat ttcgcggccg tccggcaagg tcaaacgcac cagcacttgc caatcacccg
     3361 ccatcgaaag attcatgttg gttcgatact gtccgggccc gatctctttt gcttcggcaa
     3421 aaacaggagc catgcccgcg tgcgacatgt ttccttccag cttgatgcgc gctccggcga
     3481 cgggctcgtt cgaaccgtcc ttgattttaa tcgttatcgt cacgtcgcca acccgagcgg
     3541 gcagcggaga aacttcgtac gagacggtga ggtttgacgc cgtcgtccga ttttgttgtc
     3601 gacagccaca aagaagcaca aaaggcacaa gacagcttac aaacgctctt gtgcttctta
     3661 tgct
//
LOCUS       DASWTX010001204         2914 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_321262, whole genome shotgun sequence.
ACCESSION   DASWTX010001204 DASWTX010000000
VERSION     DASWTX010001204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2914
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321262"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..711)
                     /gene="cobS"
                     /locus_tag="VGD38_18340"
     CDS             complement(<1..711)
                     /gene="cobS"
                     /locus_tag="VGD38_18340"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: protein motif:HMM:TIGR00317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008818 - cobalamin 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HEY0730052.1"
                     /translation="MLRQFLLAVQFLTRLPVPNRLATNEEELGRAAAFFPLVGVIVGG
                     STAGVYLLALRVVPVPVAVAVALAFAAFITSGFHEDGLADTFDGLGGGWTKDRALGIM
                     RDSRIGTYGALALIFLILGKFVILTELGSGHVWRWLIVAHVAARWTVLPLCRWLPYAR
                     PEGQGKLVAKQITSTALSIGSVTFLLTLLLFPWPTALAALAVTLVVTFLSGVYYKRRL
                     GGITGDCLGATNQITELLL"
     gene            complement(711..1772)
                     /gene="cobT"
                     /locus_tag="VGD38_18345"
     CDS             complement(711..1772)
                     /gene="cobT"
                     /locus_tag="VGD38_18345"
                     /EC_number="2.4.2.21"
                     /inference="COORDINATES: protein motif:HMM:NF000996.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008939 -
                     nicotinate-nucleotide-dimethylbenzimidazole
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide--dimethylbenzimidazole
                     phosphoribosyltransferase"
                     /protein_id="HEY0730053.1"
                     /translation="MPISKTQLNAQIEPLDHSWLEKAAARQLNLTKPPGILGRLEEIG
                     NRLAAIQRTTTPNVNRKRIYVIAADHGVTAEGVSAYPREVTAQMVDNFLSGGAAINVL
                     GRHGEIDVRVVDAGVDADLSSRAGLITAKNLRGTANFARGPAMSRDEAERLINAGIDL
                     ARTAKADAIQLLGIGEMGIGNTTAASAITAALTRADPATLTDRGTGVDDRVLAHKVEV
                     IRRSLLVNQPDSNDPVDVVTKVGGAEIAVMMGVVIGAALNRIAVIADGFISTAAAALA
                     VSLCPNTRDYLCLAHRSVERGHAALIDLIGLEPLLDLKMRLGEGTGAALAMHIVDASA
                     RVLSEMATFSEANVSNKAE"
     gene            complement(1776..2306)
                     /gene="cobU"
                     /locus_tag="VGD38_18350"
     CDS             complement(1776..2306)
                     /gene="cobU"
                     /locus_tag="VGD38_18350"
                     /EC_number="2.7.1.156"
                     /EC_number="2.7.7.62"
                     /inference="COORDINATES: protein motif:HMM:NF004469.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0043752 - adenosylcobinamide kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adenosylcobinamide
                     kinase/adenosylcobinamide-phosphate guanylyltransferase"
                     /protein_id="HEY0730054.1"
                     /translation="MTPKLILVLGGARAGKSTFALRLAKEIAGEGSVTFIATAQALDE
                     EMSQRIARHREERPSHWTTIEEPYRLDEALIKVSNPGVALVDCLTLFTSNWLLREDEH
                     TLNEVSNRFLTNVRSQSQTVIVVSNEVGLGLVPETPLGRSFRDLLGRVNQQFAEAADE
                     VYLLVAGLPLRLKPRD"
     gene            complement(2303..>2914)
                     /locus_tag="VGD38_18355"
     CDS             complement(2303..>2914)
                     /locus_tag="VGD38_18355"
                     /inference="COORDINATES: protein motif:HMM:NF019305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730055.1"
                     /translation="KNTIADLLWLKQNGWTEAIRDHVAAGKPLLGICGGFQMLGYEIR
                     DPHRTESDVEETSGLGLLKINTSLAREKITRQASASFYASEQGPQFNGYEIHLGETVL
                     GEDVQPLFRLQRHGDDELRRDGAVGRDGRIWGTYLHGLFDSADGLRWILNHWRGLLGK
                     HEPHTTVLDPKSERERRYDALADHFRQHMSLDLIYRALRERRQ"
BASE COUNT          562 a          817 c          918 g          617 t
ORIGIN      
        1 caggaggagt tcggttattt ggttggtcgc gccgagacag tcgccggtga tgcccccgag
       61 acgccgtttg taatagacgc cggagaggaa ggtcacgacg agcgttactg ctaaggcggc
      121 gagggctgtg ggccagggga agagaagtag tgttagcaga aatgttaccg agccgatgct
      181 gagagcggtg gacgtgatct gtttcgcgac gagcttgccc tggccttccg gccgcgcata
      241 aggaagccag cgacataaag gcaggaccgt ccagcgggcc gctacgtggg ccactatcaa
      301 ccaacgccac acgtgtcccg agcctagttc cgtaaggatt acgaacttgc cgagaatgag
      361 aaagataagt gctaacgcac cgtaagtacc gatgcggctg tcgcgcatga tccccagcgc
      421 gcggtctttg gtccaaccac cgccgaggcc gtcgaacgtg tccgccaggc cgtcttcatg
      481 aaagccgctg gtgatgaaag cagcgaatgc gagagcgaca gccaccgcaa ccgggaccgg
      541 cacgacacgc agcgccaaca ggtaaacacc tgctgtgctg ccgccgacga tcacgccgac
      601 caacggaaag aacgcagcgg cgcggcctaa ctcttcttcg ttggttgcga gccggttcgg
      661 caccggcagg cgcgtcagga attgaaccgc aagtagaaat tgacgcagca tcactcggct
      721 ttgttactga cgtttgcttc gctaaacgtt gccatttcac tcagcactct cgctgacgca
      781 tcaacgatgt gcatcgccag tgcggcgccg gttccctcgc cgagcctcat cttcagatcg
      841 agcaacggtt cgaggccgat cagatcgatc aaggcggcat ggccgcgctc gacagagcga
      901 tgggccaggc acaggtagtc gcgcgtgttg ggacacaagc taaccgcaag cgctgcggcg
      961 gcggtggaaa tgaagccgtc ggcgatcacg gcgatgcgat tgagcgcggc gccgatcacg
     1021 acgcccatca tgaccgcgat ctcagcgccg ccgacttttg tcacgacgtc tacgggatca
     1081 tttgagtccg gctgattcac gagcaacgaa cggcgaatca cttcaacctt gtgcgccagg
     1141 acgcgatcgt ctacgcctgt tccgcgatcg gtgagtgttg cgggatctgc gcgtgtgagt
     1201 gcggcggtga tggcgctggc ggcagtagtg ttgccgatgc ccatctcgcc gatgccgagt
     1261 agttggattg cgtctgcttt cgcggttcgc gcgagatcga tgccggcgtt gatcaatcgt
     1321 tcggcctcgt cgcggctcat cgcggggccg cgcgcgaagt ttgccgtgcc gcgcaggttc
     1381 ttggccgtga tcagcccggc gcgtgacgag aggtcagcat ctacgccggc gtccacaacg
     1441 cgcacgtcga tctcaccatg acgacccagc acattgatcg cggcgccgcc ggagagaaag
     1501 ttgtcgacca tctgcgcggt cacttcgcgt ggataggcgc tcacgccttc agcagtaacg
     1561 ccgtgatccg cggcgatgac gtaaatgcgt ttgcgattta cgtttggtgt ggtggtgcgt
     1621 tgaatcgccg cgaggcgatt gccgatctct tcgagacggc ccagaatgcc cggtggtttc
     1681 gtgaggttta gttggcgagc ggcggctttt tccaaccatg agtggtccag cggttcgatt
     1741 tgcgcgttga gttgtgtttt agagattggc aagttttagt cccgtggttt cagacgcagc
     1801 ggcagtccgg cgacgagcag gtagacttca tcggccgctt cggcaaactg ttggttcacg
     1861 cggccgagca ggtcgcgaaa actgcgaccc aacggagttt ccggtacgag ccccaggccg
     1921 acttcgttgg agacgacgat cactgtttgt gattgagacc tgacgtttgt caggaaacga
     1981 ttagacactt cattgagcgt gtgttcgtcc tcgcgtaaca gccagttgga tgtgaataaa
     2041 gtcaggcaat cgacaagcgc gacgccggga ttggaaactt taatcagagc ttcgtcgagg
     2101 cgatagggtt cttcgatggt ggtccagtgt gaaggccgct cttcgcgatg acgcgcgatg
     2161 cgttgcgaca tctcttcgtc taaggcttgg gctgtcgcga taaaagttac gctgccttcg
     2221 cctgcgatct ccttggcgag acgcagtgcg aaagtgcttt tgcctgcgcg tgcgccgccc
     2281 aaaaccagga tcagtttcgg ggtcattggc gtcgctcccg aagggcgcgg tagatcagat
     2341 cgaggctcat gtgttggcgg aagtgatctg cgagggcgtc gtagcggcgt tcgcgctcgg
     2401 attttggatc gagcactgtt gtgtgcggtt cgtgttttcc gagcaggccg cgccagtggt
     2461 tgagtatcca acgcaagccg tcggcggagt cgaagagtcc gtgcaggtaa gtgccccaga
     2521 ttcttccgtc gcggcctact gcgccatcgc ggcgaagttc gtcgtcgcca tgtcgctgca
     2581 agcggaagag cggctgtacg tcttcgccga gcactgtttc gccgaggtga atttcgtagc
     2641 cgttgaattg cggaccttgc tccgacgcat aaaaactggc ggaagcctgg cgcgttatct
     2701 tttcgcgtgc gagtgaagtg ttgatcttta gaagacctaa acccgacgtc tcttcaacat
     2761 cgctttctgt gcggtgcgga tcgcggatct cgtagcccaa catctgaaac ccgccgcaaa
     2821 tccccaacaa cggtttgccc gccgcgacat gatccctgat cgcttcggtc cacccgttct
     2881 gcttgagcca tagcagatcg gcaatcgtgt tttt
//
LOCUS       DASWTX010001205         1788 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_187814, whole genome shotgun sequence.
ACCESSION   DASWTX010001205 DASWTX010000000
VERSION     DASWTX010001205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1788)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1788)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1788
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187814"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..236
                     /locus_tag="VGD38_18360"
     CDS             <1..236
                     /locus_tag="VGD38_18360"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024914.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0730056.1"
                     /translation="DAEHLFTPGRDYLVARSGHEMKQLIRKVLSHPSLASDLATHGLN
                     TINERHTCAPRVDELLAIYAELAQESRQLVGAV"
     gene            233..1330
                     /locus_tag="VGD38_18365"
     CDS             233..1330
                     /locus_tag="VGD38_18365"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024914.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0730057.1"
                     /translation="MNIAFFGSSLVSAYWNGAATYYRGIIRALHRLGHRVTFYEPDAY
                     DRQKHRDIPDPDWASVIVYSVDDQHDVVRALDQARGVDLLIKTSGVGVYDRFLESAIL
                     DIKVPHTLSLFWDVDAPVTLDRVKANPADPFKDLVPLYDLILTYGGGDPVVRGYKALG
                     ARACVPIYNALDPDTHHPVPPDERFVCDLALLANRLPDREARIEEFFFTVASALPSHR
                     FVLGGNGWAGKAMPANVKYVGHVYTRDHNAFNCSARTVLNVNRDSMASYGFSPPTRIF
                     EAAGSASCLITDAWEGIETFLEPGREVLVARSSEDVVRHLSTLSQCRAKQIGEAALER
                     VLTEHTYEHRAQQLQRLLDGRMAIQRVEDAA"
     gene            1334..>1788
                     /locus_tag="VGD38_18370"
     CDS             1334..>1788
                     /locus_tag="VGD38_18370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730058.1"
                     /translation="MTKPLDIVILGLSITSSWGNGHATTFRALVRALSARGHNVCFLE
                     RDMPWYAENRDLPNPPYGLTQLYKSVAELKRKFARRVMHADLCIVGSYVPDGVEIGEW
                     AIRTCRGVKAFYDIDTPVTLAQLESGETPYLTPRLVRRYDLYLSFTGGPV"
BASE COUNT          344 a          518 c          539 g          387 t
ORIGIN      
        1 acgacgcgga acatctgttc acgcccgggc gcgattacct cgtggcgcgc agcggccatg
       61 agatgaagca gctcattcgc aaggtgttga gtcatccttc gttagcgtcg gatttagcca
      121 cacacggtct taacacgatc aacgagcgac acacgtgcgc gcctcgcgtc gatgaactgc
      181 tcgccatcta tgcggaactg gctcaggagt cccggcaact ggtgggtgcg gtatgaacat
      241 cgcgtttttt ggctcgagtt tggtatcggc ttactggaac ggcgcagcga cgtactatcg
      301 cggcatcatt cgcgcgctgc atcggctggg ccaccgcgtc accttctacg agcccgacgc
      361 ttacgacagg caaaaacatc gcgacattcc cgatcctgac tgggcttcgg taatcgttta
      421 ttcagtcgac gaccaacacg acgtggtacg cgcactcgac caagcgcgcg gcgtggacct
      481 gctgattaag acgagcggcg ttggcgtcta cgatcggttt ttagaatccg caattctcga
      541 cattaaggtg ccacacacac tatccctttt ctgggacgtc gacgctccgg tgacgctcga
      601 tcgcgtgaag gcgaacccgg cggatccgtt caaggatttg gtaccgcttt acgatctgat
      661 tctcacgtac ggcggcggcg atccagttgt gcgtggctac aaagctctcg gcgcgcgtgc
      721 ctgcgtgccg atctacaatg cgctcgatcc tgacacacat catcccgttc cgcctgacga
      781 acgcttcgtt tgcgacctcg cgttgctggc gaatcgactg ccggatcgtg aagcacgcat
      841 tgaggaattc ttttttaccg tagcgagcgc actgccgagt catcgcttcg tgctcggcgg
      901 gaacggttgg gccggcaaag cgatgccggc gaatgtgaag tacgtcggac acgtctacac
      961 gcgcgatcac aacgctttca actgttcggc gcgcacggtt ttgaacgtga accgagacag
     1021 catggcgagc tacggcttct cgccgccgac gcgcatcttc gaagcggcgg gatcggcgtc
     1081 gtgtttgatc accgacgcgt gggaagggat cgaaacgttt ctggaacccg gtcgcgaagt
     1141 gctggtggcg cgttccagtg aagacgtcgt ccgtcacctg agcacgctca gccaatgccg
     1201 tgcaaaacag atcggcgaag cagctctgga acgtgtgctg actgaacaca cctacgagca
     1261 ccgtgcgcaa cagcttcagc gactgctcga cgggcggatg gctattcagc gcgtcgagga
     1321 cgcggcttga tcgatgacga agccactgga catcgttatc cttgggttgt ccattacctc
     1381 ttcatggggt aacgggcacg cgacgacgtt tcgcgcgctg gtgcgggcgt tgagtgcgcg
     1441 cgggcataac gtgtgttttc tcgagcgcga tatgccgtgg tacgccgaga atcgcgatct
     1501 gccgaatcct ccttacgggt tgacgcagct ctacaaatcc gtggccgagc tgaagcgaaa
     1561 gtttgcgcgg cgtgtgatgc atgctgacct ttgtatcgtc ggttcttatg tgcctgacgg
     1621 cgttgagatc ggcgaatggg ccatacgcac gtgccgtggt gtgaaggcgt tctacgacat
     1681 cgacacgccc gtgacactcg cacagctcga aagcggcgag accccgtatc tgacgccgcg
     1741 tttggtccgt cgttacgact tgtacctgtc gttcactggt ggaccagt
//
LOCUS       DASWTX010001206         1775 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_235307, whole genome shotgun sequence.
ACCESSION   DASWTX010001206 DASWTX010000000
VERSION     DASWTX010001206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1775
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235307"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1775
                     /locus_tag="VGD38_18375"
     CDS             <1..>1775
                     /locus_tag="VGD38_18375"
                     /inference="COORDINATES: protein motif:HMM:NF019323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-2-macroglobulin family protein"
                     /protein_id="HEY0730059.1"
                     /translation="AIDANEQPVQAEGTVKITRDYWWEIWIDPRGREVQGEELRQLRE
                     RGDFPPVQQRGQRPWRLKFRGYQSEDVTTQTVKTDAEGMAQVNFTPDKDGYYRVAWTS
                     SQGVDPKRDRFLPLIKAETYVFVATNATTELGYRRGGLEIVVDKDTFRAGQTAPVMIN
                     VPVQDRYVLFSVEGEDLFSYKVVHVTGTAKLIEVPIEEKHVPNVYLSASMVSDTNWFA
                     DTKQVVVPPVQQFLTVAVKADREQYQPRDEGTLSITTKDVDGRPISTEVALGLVDESV
                     KYIQQDYAGDPRQFYYGAKRPLLVQTQSTLNQKTYARYQVVEGELRDVKYEVGAKEKD
                     EFRNQRRDRDDSISAAGSTFMGGAPAPARGIVAYDSVSNMTVSELPINGRAAAKMAME
                     PSATPAPGQEPAVQVRSDFRSTILWMPDVTTDANGTATVKVKYPDSLTTWSATARAAS
                     TGNQFGIGNSTTRTKQPLIVRLQAPRFFVVGDQVTVSAVINNNTDQPMSVKPALQAEG
                     VTVSGEPATVEVKANSETRVDWRVDVTHASEARLKVEARGAQYADAMEKRFTIFEHGI
                     EKFVSRSGKMRGDSVTIKLDVPKER"
BASE COUNT          402 a          486 c          557 g          330 t
ORIGIN      
        1 ggcgatcgac gccaacgaac agcccgtcca ggcggaaggc acggtcaaga tcacgcgcga
       61 ctactggtgg gagatctgga tcgatccgcg cggccgtgaa gtgcagggtg aggagttgcg
      121 gcagttgcgc gagcgtggtg attttccgcc cgttcagcaa cgcggccaac gtccgtggcg
      181 tttgaagttt cgtggttacc agagcgaaga cgtcacgaca cagacggtga agaccgatgc
      241 tgagggcatg gcccaggtta acttcacgcc tgataaggac ggctactatc gcgtggcctg
      301 gaccagcagc cagggcgttg atccgaagcg cgatcgtttt ctgccactga tcaaagccga
      361 gacgtatgtt ttcgtcgcca ccaatgcgac gacggaactc ggttatcgcc gtggcggact
      421 cgagatcgtg gtggataaag acacgttccg cgcgggacaa accgcgcccg tgatgatcaa
      481 cgtgcccgtg caggatcgct acgtgctgtt cagcgtcgaa ggcgaagatc ttttcagtta
      541 taaagtggtc catgttaccg gcacggcgaa actgatcgag gtcccgatcg aagagaagca
      601 cgtgccaaac gtgtatctca gcgcgtcgat ggtgagcgac acgaactggt ttgcggatac
      661 gaaacaggtt gtcgtgccgc cggtccagca gtttcttacg gtcgccgtga aagccgatcg
      721 cgagcagtat caaccgcgcg atgaaggaac gttgtcgatc acgactaagg acgtggatgg
      781 gcgtccgatc tcgacggaag tcgctctcgg cctggttgat gaatcggtga aatacattca
      841 acaggactac gccggcgatc cgcggcagtt ctactacggc gccaagcggc cgctgctggt
      901 ccaaacgcaa agcacgctca atcaaaagac gtacgcgcgt tatcaagtgg ttgagggtga
      961 gttgcgggat gttaagtacg aagtcggcgc gaaagaaaaa gacgagttcc ggaatcagcg
     1021 gcgcgatcgt gacgactcga ttagcgccgc gggcagcacg ttcatgggcg gagccccggc
     1081 tcctgcacgt ggcatagtgg cctacgattc tgtttcaaac atgacagtct cggagcttcc
     1141 gataaatggt cgtgcggccg ccaaaatggc catggagccc agcgccactc cggctcccgg
     1201 tcaggaaccc gcggtccagg ttcgcagcga cttccgttcg acgattctct ggatgcctga
     1261 cgtcaccaca gacgcaaacg gaaccgcgac ggtgaaagtg aagtatccgg attctttgac
     1321 cacgtggtcc gccaccgcgc gtgccgccag cacgggtaac caattcggca tcggcaactc
     1381 gacgacgcga acgaagcagc cgttgattgt tcgtctgcaa gcgccgcgtt tctttgtcgt
     1441 tggcgatcaa gtgacggtgt cggccgttat caacaacaac accgatcagc cgatgagtgt
     1501 taagcctgca ttgcaagccg agggtgtgac tgtttcgggc gagcccgcga cggtagaagt
     1561 gaaagccaac agcgagaccc gtgtcgattg gcgcgtcgac gtaacgcacg cgagtgaagc
     1621 gcgattgaaa gtcgaagcgc gtggcgcaca gtacgcagac gcgatggaga aacgcttcac
     1681 gatcttcgag cacggcatcg agaagtttgt ctcacgctcc ggcaagatgc gcggcgacag
     1741 cgtaacgatc aagctcgacg ttccgaaaga gcgtc
//
LOCUS       DASWTX010001207         1569 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_321335, whole genome shotgun sequence.
ACCESSION   DASWTX010001207 DASWTX010000000
VERSION     DASWTX010001207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321335"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..607)
                     /locus_tag="VGD38_18380"
     CDS             complement(<1..607)
                     /locus_tag="VGD38_18380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730060.1"
                     /translation="MRPSLWTIPYRLTRSKTKALKEARENGQQVVPIVGAGLSADCGF
                     PIIAAVVRYLGRLYHYIGLRGPVYDYSGHKDLKHDIFDRHFNRYELRPWEFLEDFGWP
                     DWFQLNEDLFWKFEVNKTKGKRSKKPVSDEIESAERKELDSILLRFNPQGAQRYSELV
                     DDTSKSLSVLRKRRLFRGPKRQSAIEQIQKRIDSRFQVNWSS"
     gene            complement(686..>1569)
                     /locus_tag="VGD38_18385"
     CDS             complement(686..>1569)
                     /locus_tag="VGD38_18385"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0730061.1"
                     /translation="VDLESVVRNAIETSRPVLAAAENELHLSLPAKPVLLEADPVRLA
                     QVFSNLLNNAAKYSEPGGRISLVATQSGNELTIAVSDTGIGIEPGQLSQIFGMFVQLD
                     AAEKQIQSGLGVGLTLVQRLIEMHGGSIEARSEGQGKGSEFVVRLPALSPSSQTASEV
                     ETVSDDRPQARRRILVVDDNVDSAESMAMMLELSGHDVATAHDGLEGLEVAEKFQPHV
                     ALFDLGMPRLDGYEAARSIRQQSWGQKIMLVALTGWGQSEDKRRSREAGFDAHLVKPI
                     DFEVLEELIDKQNTSQI"
BASE COUNT          340 a          456 c          395 g          378 t
ORIGIN      
        1 tgctggacca attcacctgg aatcgtgagt cgatcctctt ctgaatctgc tcgatcgcgc
       61 tctgccgctt tgggcctcta aataaccttc tcttcctcaa aacactcagg ctcttactcg
      121 tatcgtcgac taactcggag taacgctggg ctccctgcgg attgaagcga agtagaatgc
      181 tgtcgagttc tttacgttcg gcactttcga tttcatcact aacgggcttt ttggaacgct
      241 tgccttttgt tttgttgact tcgaatttcc agaaaaggtc ctcattcagt tgaaaccaat
      301 caggccaacc gaaatcttcc aggaattccc acggccttag ctcgtatctg ttgaaatgac
      361 gatcgaatat gtcgtgtttg aggtccttgt gtccgctata gtcatacact ggtccacgca
      421 gaccgatgta gtgatacaaa cggccgagat agcgaactac tgctgcgatg atcggaaagc
      481 cgcaatcggc tgatagacca gcgccgacga tcggcaccac ctgctggccg ttttcacgcg
      541 cttcttttag agctttggtc ttcgaccgag tgagtcgata cggaattgtc cataagctgg
      601 ggcgcaacgc cttacaagag tcggtcagga actggtagaa ctgcgagcgg ttgagaatga
      661 cgatagagct tcgttcggcg ggaaactata tttgcgaggt gttttgtttg tcaatcaatt
      721 cttccaacac ttcgaaatcg atcggcttca caagatgcgc atcaaaaccc gcttcgcggc
      781 tgcgccgctt gtcttcggac tggccccagc cagttaatgc gacgagcata atcttctgcc
      841 cccacgactg ctgacgaatc gagcgcgccg cttcatatcc gtcgagcctc ggcataccga
      901 gatcgaacaa cgccacgtgc ggttgaaact tctccgcaac ttccagtcct tcgagaccat
      961 catgcgccgt cgcgacgtcg tgtccggaca actccagcat catcgccatg ctctctgccg
     1021 aatcgacgtt gtcgtccaca accagaatgc gacggcgcgc ctgcgggcga tcgtccgaga
     1081 cagtttcgac ttcggaagcg gtttgagaag atggcgaaag agccggcaag cgcacgacaa
     1141 attcgcttcc cttaccctgg ccttcgctgc gcgcttcaat gctgccgccg tgcatttcga
     1201 tcaaacgttg gaccaatgtc agacccacgc ccagtcccga ttgaatctgc ttttccgcag
     1261 cgtcgagttg cacaaacatc ccgaagatct gtgacagctg tccgggctcg ataccgatac
     1321 cggtatcgct tacggcgatc gtcagttcgt ttcctgattg ggtcgcgact aacgaaatgc
     1381 gcccgccagg ctcgctgtac ttcgccgcgt tattaagaag atttgagaac acctgggcca
     1441 ggcgaaccgg atcggcctcc agcaacacgg gtttcgcagg caaactgagg tgcagttcgt
     1501 tttccgcggc ggccaacaca ggacggctcg tttcgatcgc gttgcgcacc accgattcca
     1561 gatccacct
//
LOCUS       DASWTX010001208         3233 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_14578, whole genome shotgun sequence.
ACCESSION   DASWTX010001208 DASWTX010000000
VERSION     DASWTX010001208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3233
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14578"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1071)
                     /locus_tag="VGD38_18390"
     CDS             complement(<1..1071)
                     /locus_tag="VGD38_18390"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HEY0730062.1"
                     /translation="MSKQGDMSGAEFRRFGHELIDWIADYFDNIDDLPVLAAIEPGDL
                     KAQLPSVPPEQGEPMEQIVADLDRLIVPALTHWSHPSFFAYFATSTSGPGILGELLTA
                     AFDNKAMLWRTSPASTELEEVTLDWLRQMMGLDPGYTGIIYDTASVSSMHAIAAAREG
                     VEKRVREDGMSGRPDLPLLRVYASEQAHSSIEKAVIALGLGQRGLRKIPADREFRMDA
                     RALEAAIEEDASKGYLPFCIVATVGTTSTSSIDPVRETIPIGEKYAMWLHVDAAYAGS
                     AAIVPEFRWILDGCERADSVVTNPHKWLFTPFDLSVLYCRHMDLLKRAFSLVPEYLRT
                     PEQEKVRSGSDYGIQLGRRFRAL"
     gene            1209..2414
                     /locus_tag="VGD38_18395"
     CDS             1209..2414
                     /locus_tag="VGD38_18395"
                     /inference="COORDINATES: protein motif:HMM:NF024825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY0730063.1"
                     /translation="MKRLLIAVTVSISLLSACNPQGGGDNVRVGVFMSTTGSTANFGI
                     SSVNGIKMAADEVNAAGGINGKQIELNVQDDRSDASEAATIVTKFVTQDQVHAILGEV
                     ASSRSIAAAPIAQNAKIPMLTPSSTNPEVTKKGDFIFRSCFIDPVQGAAIAQFAARSL
                     NAKTAAIMVDRKNDYSTGLEKVINETFTRMGGKIVAVQSYQEGDQDFNAQLTSLKGAN
                     PEVIFVPGYYNDVGLIAKQARDKGITVPLVGGDGWDSTQLYAIGGTALNGSYFTNHYS
                     PYDTDPKVQKFVNDYKARYGSIPDALAATAYDAAKIMFDAIKRSKSLDGADIRDALAA
                     TKDFPGVTGTVTFNENRDAVKPLVMIEIKDGGTYAVKERVQVEGTAAASTAAPADAAA
                     PVPAKTTSQ"
     gene            2488..>3233
                     /locus_tag="VGD38_18400"
     CDS             2488..>3233
                     /locus_tag="VGD38_18400"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEY0730064.1"
                     /translation="MSTFLQQLINGISLGAIYSLIALGYTMVYGVLKLINFAHGDVYM
                     VGAFMGFYLANGIGARGAQAIGMSPDGFVARGLLGGGTMEPSLITALVVMLLAMAICA
                     AIGVIIERLAYRPVRKYSRLTALITAIGVSLLLENGGQVVFGAEPKFFPELFGKRNIE
                     LFGGASINSADIVVLVIALVLMVALQLIVYRTKTGRAMRAVSFNLQSAKLMGINTDHI
                     IAFTFALGSALAAAAGVLVAIRIPRIDPLMG"
BASE COUNT          714 a         1000 c          892 g          627 t
ORIGIN      
        1 aagcgcacga aagcgacgcc cgagttgaat gccgtaatcc gatccgctgc gcaccttttc
       61 ctgttccggc gttcgcaaat attcgggcac gagcgaaaac gcgcgcttca gcaaatccat
      121 gtgccggcag taaagcaccg aaagatcaaa cggagtgaag agccacttgt gcggattcgt
      181 caccaccgaa tcggcacgtt cgcagccgtc gagtatccat ctgaactccg gcacgatcgc
      241 cgcggaaccc gcatacgcgg cgtcgacgtg cagccacatc gcatattttt ctccgatcgg
      301 aatcgtctcc cgcaccggat cgatactcga cgtcgaggtc gttccgaccg tcgcaacgat
      361 acaaaacggc aagtacccct tgctcgcgtc ctcttcaatc gccgcctcca acgcgcgcgc
      421 gtccatgcga aactcgcgat cggccggaat cttccgcaac ccacgttggc ccaaaccaag
      481 cgcgatcacg gctttctcga tcgacgagtg cgcctgttcg gaagcgtaaa ctcgcaacaa
      541 cggcaaatcc ggccgccccg acatgccgtc ttcgcgaacg cgcttctcca caccttcgcg
      601 cgccgcggca atggcgtgca tgctcgacac ggaagcggtg tcgtaaatga tcccggtata
      661 gcccgggtcg agtcccatca tctgccgcaa ccagtcgagc gtgacttctt cgagctcagt
      721 cgaggcgggc gacgtgcgcc acagcatcgc cttgttatcg aaagccgcag tcagcagttc
      781 gcctaaaatt cccggtccgg aagtcgacgt cgcgaagtac gcgaagaagg acggatggct
      841 ccagtgcgtc agcgcgggca cgatcaaccg gtccaggtcc gcgacgatct gctccatcgg
      901 ctcgccttgt tccggcggca cgctgggcaa ctgcgccttc aaatcccccg gctcgatcgc
      961 cgccagcacg ggcaaatcgt caatgttgtc gaaataatca gcaatccagt cgatcagttc
     1021 atgcccaaag cggcgaaact ccgccccact catgtctcct tgtttgctca cggccgcata
     1081 tcttacaggc acagcccacg aattcgcacg gttttaccgc taatgacatt tgcctaacgc
     1141 cgcgcgacaa agctattatt cagcgcgatt acgccgcatc agaaacttct agccctgaga
     1201 ggaactatat gaaacgtctt ttaatagcag taactgtctc aataagtctg ttgagcgcat
     1261 gcaatcctca gggaggaggc gataatgttc gcgttggcgt gtttatgtcg accaccggat
     1321 cgactgcaaa cttcggtatc tcgtcagtta acggcatcaa gatggccgcc gacgaagtca
     1381 atgcagccgg cggtatcaac ggcaagcaga tcgagctgaa cgtgcaggac gatcgttcgg
     1441 acgcgtccga agccgcgacg atcgtgacga agtttgtgac gcaggaccag gtgcatgcga
     1501 ttcttggcga agtcgccagt tcgcgctcga tagccgcggc gcccatcgca cagaacgcaa
     1561 aaatcccgat gttgacgccg tcgtcgacaa atcctgaagt cacgaagaag ggcgatttca
     1621 tcttccgcag ctgtttcatc gatcccgttc agggcgcggc aatcgcacag tttgcggccc
     1681 ggtcactcaa cgccaaaacc gcggcaatca tggtcgaccg caagaacgat tactcgaccg
     1741 gtctcgaaaa agtcatcaac gaaacgttca cccgcatggg cggcaagatc gtcgccgtgc
     1801 agtcgtatca ggaaggcgat caggacttca acgcgcagtt gacctcgctc aagggcgcca
     1861 atccggaagt catcttcgtt cccggttatt acaacgacgt cggcttgatc gcgaaacagg
     1921 cgcgcgacaa aggcatcacc gtgccgctcg tgggcggcga tggttgggac tccactcagc
     1981 tttacgccat cggcggtact gctttgaacg gttcgtattt cacgaatcac tactcgccat
     2041 acgacaccga tccgaaagtg caaaagtttg ttaacgacta caaagcacgt tacggaagca
     2101 ttcccgatgc gctcgcagca accgcttacg acgccgcgaa gatcatgttc gacgcgatca
     2161 agcgctcgaa gtcactcgac ggcgccgaca ttcgcgacgc cctcgcggca acgaaagact
     2221 tcccgggcgt gaccggcaca gtcaccttca acgagaaccg cgacgccgtg aagcccctcg
     2281 tcatgatcga gatcaaagac ggcggcactt acgcagtgaa agaacgcgtc caggtcgaag
     2341 gcacggccgc ggcaagcacg gcagccccgg cagacgcagc ggcgccagtg ccggccaaga
     2401 ccacaagtca gtgatcgcta tcagcgctcg aattgcagcg gtaacagatc tccgcactcc
     2461 gacactcgag gatagcgaat cacaagtatg agtacgttcc tccaacaact gatcaacggt
     2521 atctcgctgg gcgcaatcta ttcgctgatt gcgctcggtt acacgatggt gtacggggta
     2581 ctgaaactga ttaacttcgc gcacggcgac gtctacatgg tcggcgcgtt catgggcttc
     2641 tatcttgcca acggtatcgg agcgcgcggc gcacaagcca tcggcatgag cccggacggg
     2701 ttcgtcgcgc gcggactgct cggcggtggc acgatggaac cgtcgctgat caccgcactg
     2761 gtagtgatgc tgctcgcgat ggcgatttgc gccgcgatcg gcgtgatcat cgaacgtttg
     2821 gcgtatcgcc cggtgcgcaa gtattcgagg ctgacggcgc tgatcaccgc gatcggcgtg
     2881 tcgctgttgc tcgaaaacgg cggtcaggtc gtgttcggcg ccgagccgaa gttctttccc
     2941 gaactcttcg gcaaacgcaa catcgagctt ttcggcggcg caagtatcaa cagcgctgac
     3001 atcgtcgtgc tggtgatcgc gctcgtgctg atggttgcgt tgcaactgat cgtttaccgg
     3061 accaagaccg gacgcgcgat gcgcgctgtt tcattcaatc tccaatcagc gaagctgatg
     3121 ggcatcaaca ccgatcacat catcgctttc acgttcgcac tcggttcggc gctcgcggca
     3181 gcggccggag tgttggtcgc gattcgcatc ccacgcatcg atcctttaat ggg
//
LOCUS       DASWTX010001209         1982 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_321381, whole genome shotgun sequence.
ACCESSION   DASWTX010001209 DASWTX010000000
VERSION     DASWTX010001209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1982)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1982)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1982
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321381"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(22..783)
                     /locus_tag="VGD38_18405"
     CDS             complement(22..783)
                     /locus_tag="VGD38_18405"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HEY0730065.1"
                     /translation="MEQRLQKLIATAGIASRRHAEELITAGRVTVNGEVVKELGTKAD
                     PERDHIKVNGKLINPQLKARDKVYVLLNKPRGYLSSVSDPEGRPLVTELLPPNLGRLH
                     PVGRLDFNTEGLLLLTNDGDFTNYVTAARNRVEKVYEVKVKGVPPDAAIQRLRKGVTL
                     EDGTRTAPAKITKLSETQTNAWYEVLLHQGRNQQVRRMFELIGHSVLKLRRVRIGFLT
                     DENLKPAHWRFLSPAEAKRLMKSQVINSPAKGKRT"
     gene            complement(790..1482)
                     /gene="scpB"
                     /locus_tag="VGD38_18410"
     CDS             complement(790..1482)
                     /gene="scpB"
                     /locus_tag="VGD38_18410"
                     /inference="COORDINATES: protein motif:HMM:TIGR00281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HEY0730066.1"
                     /translation="MTENRDTEPIESTDEAALNEEASRELEALLAEEESAAAMDAETP
                     DDGPLAAPQSDAEQSAIIEALIFVSEEPLSAKTLAEVLKLDKALVEKSLTRLAEEFNA
                     RQSGLQLREVAGGWQFATRPEYHEHVRAFLKTRPSAKLSIASLETLAVIAYRQPITVP
                     EILEIRGVQSPSAIKTLLDKKLIVAKGRKETVGRPMMYGTSKEFLLQFGLKDLSELPS
                     VEDFHDLSGGGS"
     gene            complement(1486..>1982)
                     /locus_tag="VGD38_18415"
     CDS             complement(1486..>1982)
                     /locus_tag="VGD38_18415"
                     /inference="COORDINATES: protein motif:HMM:NF014654.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="segregation/condensation protein A"
                     /protein_id="HEY0730067.1"
                     /translation="KTKMLLPRDPQAVAEAEEDPRSDLVNQLLEYQKYKAAANMLWSR
                     ATVEQAVFKRAELETDKNNPEVAVGLFDLLKVFQDILARHKEEQLLEIEREEITMAEM
                     LERLRNMVMSSGELNLRVFFERARSRRELVLAFLSVLELVRTTEVKLFQRETFGDIVA
                     RAGS"
BASE COUNT          392 a          604 c          512 g          474 t
ORIGIN      
        1 ttaattcaaa atgcatggcc gttatgtccg ctttcccttt gccggcgagt tgatgacctg
       61 cgacttcatc aaacgctttg cttccgcagg cgacagaaaa cgccagtgag ccggtttcaa
      121 attctcatca gtcagaaaac cgatgcgcac gcgtctcaac ttcaacacag aatgaccgat
      181 caactcaaac atccggcgca cttgttgatt gcgtccctgg tgaagcagca cctcgtacca
      241 cgcgttggtt tgcgtctcgc tgagcttcgt gatcttcgcc ggcgcggtgc gcgtgccgtc
      301 ttcgagcgtc acgcctttgc gcaatcgttg aatcgccgca tcggggggca cgcctttaac
      361 tttaacctcg tagaccttct cgacgcgatt ccgagcggca gtgacgtagt tcgtaaaatc
      421 gccgtcgttg gtcagcagca acaagccttc cgtgttgaaa tcaagacggc caaccggatg
      481 caggcgtccc aggttcggcg gcagcaactc ggtcacgagc ggacgtcctt ccgggtccga
      541 cacactcgac agataaccac gcggcttgtt gagcagaacg taaactttgt cgcgcgcttt
      601 gagttgagga ttgatgagct tgccgtttac cttgatgtga tcgcgttcgg gatcggcctt
      661 cgtgccaagc tctttaacga cttcgccgtt aaccgtcacc cggcccgcgg tgatgagttc
      721 ttccgcgtgg cggcgcgagg caatgcctgc cgtggcgata agtttttgca gccgttgttc
      781 cacaattcat tatgacccgc cgccgctcag gtcgtgaaag tcttcgacgc tcggcaactc
      841 cgacaaatct ttcaaaccaa actgcagcag gaactccttc gacgttccat acatcatcgg
      901 ccgcccgacc gtctctttgc gccctttggc gacaatcaac ttcttgtcga gcagcgtttt
      961 gatcgcggag ggcgattgca cgccgcgtat ttcaagaatc tcggggacgg taatgggttg
     1021 cctgtaagcg attacggcga gtgtttcgag tgacgcgatc gagagttttg cgctcggtct
     1081 ggttttcaga aaggcgcgca catgttcgtg atactcggga cgcgtcgcga actgccagcc
     1141 gccggcgact tcgcgtaact gcaaaccgct ctggcgcgcg ttgaactctt cggcgaggcg
     1201 agtaagggat ttttccacga gtgctttgtc gagttttaat acttccgcga gggttttcgc
     1261 actcagaggc tcttctgaaa caaagatcaa agcctcaata attgcggatt gttcggcgtc
     1321 gctctgcggc gcggcaagtg ggccgtcatc gggagtctcc gcgtccattg ccgcagccga
     1381 ctcctcttcc gcaagcaacg cttccagttc gcgactcgcc tcctcattca gcgccgcttc
     1441 atccgtgctt tcaatcggtt ctgtatctct gttctcagtc attgattagc tacccgctcg
     1501 ggcaacgatg tccccaaaag tctcgcgctg aaacagtttc acttcagtgg ttcttactaa
     1561 ctccaacaca gaaagaaaag ccagcacaag ctctcgacgc gatctggcgc gctcgaaaaa
     1621 cacccgcagg ttgagctcgc cggacgacat caccatgttg cgcaaacgct cgagcatctc
     1681 ggccatcgtg atctcttccc gctcgatctc cagcaactgc tcttccttgt gccgcgcgag
     1741 aatgtcctga aacaccttga gcagatcaaa cagcccaacc gcgacttccg gattgttctt
     1801 gtccgtctcc agctccgcgc gcttgaacac cgcctgctcg accgtcgcac gcgaccacaa
     1861 catgttcgcc gctgctttgt acttctgata ctcgagcagt tgattgacga ggtcggaacg
     1921 gggatcttct tccgcctctg ccaccgcctg cggatcgcgc ggcaacagca tcttcgtctt
     1981 ca
//
LOCUS       DASWTX010001210         4468 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_14592, whole genome shotgun sequence.
ACCESSION   DASWTX010001210 DASWTX010000000
VERSION     DASWTX010001210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4468
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14592"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..701)
                     /locus_tag="VGD38_18420"
     CDS             complement(<1..701)
                     /locus_tag="VGD38_18420"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0730068.1"
                     /translation="MVTSSVVVGQTPSEAEARKAVAANPKDAEAHGLLAMILDQRGQA
                     DEAEREYQTALKLNPKLVSALSNYGVLLARTNRPAEAIAKFEEVLRIDPKHERAIFNL
                     GALYAARGDYVRAVPLLEKAAGTPPCKPDMRASEDRALLLTLVNAYVHINRKPDALSL
                     SRCLEETSAGDARILFTLALSLAEANEYEEAVRLFQRTNELRPNTYEVLYNLGLALYN
                     LDRFSEATQALTAAKA"
     gene            complement(802..4344)
                     /locus_tag="VGD38_18425"
     CDS             complement(802..4344)
                     /locus_tag="VGD38_18425"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0730069.1"
                     /translation="MPLASARILLVALSLLLTAAISAFAQSNKGSIVGTVRDLNEALV
                     ANAKIKVTSVKTGEVRETDTNDEGTFTVTNLEPGQYSVTVEAQGFQPVTFQALQVETN
                     ARVPLDVKFSELSAATSSVTVTADAAPLVESETSVRGDLITGRQVTDLPLPQRNFTLL
                     AGLSPGVVRPNLGLLGGGGQNNTESTRFRESGGSVLVVNGARATNNNFTLDGVDNNEG
                     QFAQIAIYPQPDAIAEFKIETSVPSAESGRAGGGIVSTTFKSGGNDVHGTVGEIYQGR
                     FLSAAASRFDDPTSPPVPNYVTHNFYGTIGGPIFLPRPGEGGPVFYDGRNRSFFFFSL
                     NGQRNTTPIFGGTGDPQAVPVPTARMRQGDFSELLRPGVLREFPLAGGGSVVAPVGTI
                     FAPNGTPIPGNDLRNCPSCGGFSPFARAYVNAFPLPNLPGAGRNFVTNRSEHAIVDSY
                     DIRIDHRITDNNTIFGRYSKSESARSRDNFFPLGTSPNGNDLPAGPSAGDEFGDAKGF
                     TMGNTHIFSPTVVNDARFGVTRVEIGIFNTGVNGTGGFSPTVTAQLGAPNINISPNTS
                     GIVLVGIVDELTGTDRATEFTGDGGPFYFLSNNFHFADALTVIKGNSTFKFGGDFRVR
                     QNSNYDGGRNNGTKGNYQYGTTGSGFVSGNYNGIGPNDTGSSLANFLLGYQPGFVGRG
                     DPGGPYFQSTKEMAFFVQDDWKVNPDLTLNLGLRYDVFTAPTERFDRQSNFDPVTRTI
                     QMAGENAPGGRDLANTDKNNFGPRIGFAYSGFKSDKSLVIRGGYGLLYAVDVSAAQPL
                     TANPGTGAGSFACTPITNPGGCPSVFQSRFPFDNGIPTAPFTVAAPGTSFAAPTTGGL
                     ILFNDPNRTDEMYHQYNLTTQWEFRQNWLGEVGYVGSLGRNLLVLQNIGTGNDEGGPG
                     SREVLGIGPITATRYRGKSNYNALQSKLEKRFSRGLSLLTSYTWAHAIDDSPGGICSN
                     GASARDCGPDDPTRPELERGNADTDVRHRFTFANVWDLPFGRGRRWGGDMPKALDFAI
                     GGFQFNNIVVWQSGPVFNVTCNGGRVDIIGDPNPTQAQEDQGLELNRAAFRCAQARVF
                     PSDVNSPHIGSLGRNVFRGRPQFYWDASLFKNFPISAISESFNVQFRFSAYNVLNRVN
                     RSSPNGDINNTGDFGRDINEQRRRQMEFSLKLIF"
BASE COUNT          900 a         1267 c         1373 g          928 t
ORIGIN      
        1 gctttggctg ctgtcagcgc ctgggtcgcc tcgctgaaac gatcgaggtt gtagagcgcg
       61 agcccgaggt tgtagagcac ttcgtaagtg ttcggacgca gctcgttcgt gcgttgaaag
      121 agccgcactg cttcttcgta ctcgtttgct tccgccaaac tcagcgcgag agtgaaaaga
      181 atccgcgcgt cgcccgcgct cgtctcttca agacatcgcg acaacgaaag cgcatccggc
      241 ttgcgattga tgtgcacgta agcgttcacc aaagtaagca gcaaagcgcg atcttctgac
      301 gcgcgcatgt cgggcttgca aggcggcgtg cctgcggcct tctcgagcaa aggcaccgca
      361 cgcacgtaat caccgcgcgc ggcatagagc gcgcccaggt tgaaaatcgc gcgttcgtgt
      421 tttggatcga tccttagcac ttcttcaaac ttcgcaatcg cttcggcggg acgattcgtg
      481 cgtgccagca acacgccgta gttcgacaaa gcagagacga gtttcgggtt caacttcagc
      541 gcggtttgat attcacgttc cgcttcgtct gcctgcccgc gctggtccag gatcatcgcg
      601 agcaaaccat gcgcttccgc gtctttggga ttggcagcga cggcctttcg cgcttctgct
      661 tcactaggcg tctgaccaac gaccacggaa gaggtaacca cagacgagaa ccacaaagag
      721 gcacagaaaa cacagaacat agcccacgtt gccctgtgcc ttttgtgcct cttggtggcg
      781 aacactacta gaaattacac gctagaagat tagtttgaga gagaactcca tctgcctgcg
      841 ccgctgctcg ttgatgtcgc ggccaaagtc gcccgtgttg ttgatatcgc cattcgggga
      901 cgaacgattc acacggttta gcacattgta agccgaaaag cgaaactgca cgttgaacga
      961 ttcgctgatc gcgctgattg ggaagttctt aaagagcgac gcgtcccaat aaaattgcgg
     1021 ccggccgcgg aacacgttgc ggcccagcga gccgatgtgc ggactgttca catcgctcgg
     1081 gaagactcgc gcctgcgcgc agcggaaagc ggcgcggttg agctcgagtc cctgatcttc
     1141 ctgtgcttga gtcggattcg gatcgccgat tatgtcgacg cggccgccat tgcaagtcac
     1201 gttaaagacc ggcccactct gccagaccac gatgttattg aattggaacc cgccaatggc
     1261 aaagtccagc gccttcggca tgtcaccgcc ccagcgtctg ccacgcccga acggcaggtc
     1321 ccaaacgttg gcgaaagtaa atcgatgtct gacgtccgta tcggcatttc cccgttcgag
     1381 ctcgggccgt gtcgggtcgt cggggccgca atctcgcgca ctcgcgccgt tggaacagat
     1441 gcctccgggt gagtcgtcga tggcgtgtgc ccacgtataa cttgtcagta gcgatagacc
     1501 tcgcgagaag cgtttttcga gcttgctctg taacgcgttg taattcgact taccgcggta
     1561 acgcgtggcg gtgatgggac caatgccgag cacttcgcgc gagcctggtc caccttcgtc
     1621 gttaccggtg ccgatgtttt gcagcactaa aagatttcgt cccaacgaac caacgtatcc
     1681 aacctcgccg agccagttct gcctgaactc ccactgcgtg gtcaggttgt actggtgata
     1741 catctcatcc gtgcgattcg gatcgttgaa aagaatgaga ccgccggtcg tcggcgcggc
     1801 gaaactcgtg cccggcgcag cgaccgtgaa aggcgcggtg ggaataccgt tgtcgaaagg
     1861 aaagcgcgac tggaagaccg agggacagcc gcccggattc gtgataggcg tacaagcaaa
     1921 actgcccgcg cccgtgccgg ggttcgcagt caacggctgg gccgcgctga cgtcgacggc
     1981 gtaaagcaga ccataaccgc cacgaatgac gagcgacttg tcagacttga agccgctgta
     2041 agcgaaaccg atgcgtggtc caaagttgtt cttgtcggtg tttgcgagat cgcgtccgcc
     2101 cggggcgttc tcgccggcca tctggatcgt tcgcgtgacc ggatcgaagt tgctctggcg
     2161 atcgaaacgt tcagtcggcg ccgtgaacac gtcgtaacgc agtccgaggt tcagcgtcag
     2221 atcgggattg actttccaat cgtcctgcac gaagaaagcc atttccttgg tcgactggaa
     2281 gtatggacca cccggatcgc cgcggccgac gaagcccggc tgataaccaa gcaggaagtt
     2341 ggcgagcgac gaacccgtat cgtttggacc gatgccgttg taattgccgg aaacgaaacc
     2401 gctgccggtc gtgccgtact gatagttgcc tttcgtgccg ttattgcggc cgccatcgta
     2461 gttgctgttc tgacgaacgc gaaagtcacc gccaaacttg aaagtggaat tgcccttgat
     2521 gaccgtgagc gcgtcggcaa agtggaagtt gttcgacagg aaatagaaag gaccgccgtc
     2581 gccggtgaac tcggtcgcgc ggtcggttcc ggttaactca tcgacgatgc cgacgagcac
     2641 gatgccgctg gtgtttggac tgatgttgat gttgggcgcg ccgagctggg ccgtaacggt
     2701 cgggctgaac ccgccagtgc cgttgacgcc ggtgttgaag attccgatct ccacgcgcgt
     2761 gacaccgaag cgtgcgtcat taacgaccgt gggcgagaag atgtgcgtgt tgcccatcgt
     2821 gaagcccttc gcgtcgccaa actcgtcgcc ggctgatgga ccagcgggca aatcgttgcc
     2881 gttaggcgac gtgcccagcg ggaagaagtt gtcgcgcgac cgcgctgatt cggacttgct
     2941 gtaacgtcca aagatcgtgt tgttgtcggt gatgcgatga tcgatgcgga tgtcgtagct
     3001 gtcgacgatc gcgtgttccg aacggttcgt cacgaagttg cggcccgcgc ccggaagatt
     3061 cggtaacgga aacgcattga cgtaagcgcg cgcgaacggc gagaagccgc cgcagctcgg
     3121 acaattgcgt agatcgttgc cggggatcgg cgtgccgttt ggcgcgaaga tcgttccgac
     3181 gggtgcgacg acactgccgc cgccggccaa cggaaactct ctcaatacac ccgggcgcag
     3241 cagttcgctg aagtcacctt gccgcattcg cgcggtcggc accgggacgg cttgcggatc
     3301 gcccgtgccg ccgaagatcg gtgtcgtgtt gcgttgtccg tttagcgaga agaagaagaa
     3361 cgagcgattg cggccgtcgt agaaaaccgg gccaccttcg ccgggccgcg gcaggaagat
     3421 tggaccacca atcgtgccgt agaagttgtg cgttacgtag ttcggcaccg gcggcgatgt
     3481 cgggtcgtca aaccggctcg cagcggcgct gagaaaacgg ccctggtaaa tctcgccgac
     3541 agttccgtga acgtcgttgc cgccggactt gaacgtcgtc gagacgatgc cgccgccagc
     3601 gcgtcctgat tcggccgaag gcacgctcgt ttcaattttg aactcggcga tggcgtcggg
     3661 ttggggatag atcgcgatct gcgcgaactg tccttcgttg ttgtcgacgc cgtcgagcgt
     3721 gaagttgttg ttggttgcgc gggcgccgtt gaccacgagc accgagccgc ctgattcacg
     3781 gaagcgagtc gattccgtgt tgttctgacc gccgccgccg agtagaccga gattcggacg
     3841 aaccacgccg ggcgaaagac ccgcgagcaa agtaaagttt ctttgcggca acggcaggtc
     3901 ggtgacttgc cggccggtga tgagatcgcc gcgcacgctc gtttcgcttt caacgagggg
     3961 cgccgcatcg gcggtgacag tcaccgaaga cgtcgcagca ctgagctcgc tgaacttcac
     4021 gtcgagcggc acgcgcgcgt tggtttcgac ctgcagcgcc tggaacgtga ccggctgaaa
     4081 tccctgcgcc tcgacggtca cgctgtactg gcccggctcg agattggtca ccgtgaacgt
     4141 gccttcgtcg ttggtgtccg tctcgcgcac ctctccggtc tttacgctcg tgactttgat
     4201 cttggcattg gcgacgagcg cttcgttcag gtctctgacg gtaccgacaa tggagccttt
     4261 gttactctgc gcaaacgctg aaatagcggc agttaggagc agcgacaggg caacgaggag
     4321 gatgcgggcc gaggctagtg gcattctcat atagaagtcc ttcagggaaa gcaggctgta
     4381 aaaactggaa acgcgagata gtttgttgtc agaacgaacg aagtttttaa tacagattcc
     4441 agacgctgtc aacttttttt tggattta
//
LOCUS       DASWTX010001211         1585 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_14613, whole genome shotgun sequence.
ACCESSION   DASWTX010001211 DASWTX010000000
VERSION     DASWTX010001211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14613"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..949
                     /locus_tag="VGD38_18430"
     CDS             <1..949
                     /locus_tag="VGD38_18430"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0730070.1"
                     /translation="AEIDVVVFAFDGEQRLQLVNRAGEKLLAQPSARLLGRTSTELGL
                     SECFNWPVGAGPKTMQMVFPGGVGRWDIRRSTFREGGQQHQLLVLTDLSQTLREEERT
                     AWQRLLRVLGHELNNSLAPIKSVAGSLADLMRRDPEPPDWREDMHHGLAVISSRADSL
                     ARFVESYSKLARLPPPRLEPLKIGTLVSRVASLETRLPVSVVSGPEVVVQGDDVQLEQ
                     LLINLVRNAVDASMETRGRVEVGWQQNNGNVEVWIRDEGPGLASTANLFVPFFTTKAE
                     GSGIGLVLSRQIAEAHGGTLTLENRRQFRGCEARLRLPL"
     gene            complement(993..>1585)
                     /locus_tag="VGD38_18435"
     CDS             complement(993..>1585)
                     /locus_tag="VGD38_18435"
                     /EC_number="5.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF013431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016857 - racemase and epimerase activity,
                     acting on carbohydrates and derivatives [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aldose epimerase family protein"
                     /protein_id="HEY0730071.1"
                     /translation="NELKIDYTASTDKDTVTNLTHHSYFNLAGEGNGDILDHRVVLKA
                     SRFVPTDAGSIPTGQLKNVAGTPFDFLSAHTIGERINQDNEQLKFGNGYDHTWVINGR
                     MGMLRQAASVYEPTSGRVMEVWTTEPGVQFYTGNFLDGSRPGKSGKAYPRRSGFCLET
                     QHYPDSPNRPNFPTTTLRKGATYRSTTIYRFSARKA"
BASE COUNT          271 a          380 c          561 g          373 t
ORIGIN      
        1 ggcggagatc gacgttgtcg tgtttgcttt cgacggcgag cagcgtttgc agctcgtgaa
       61 tcgtgcgggt gaaaaattgt tggcccaacc ttcggcgcgt ttgttgggcc gcacgagcac
      121 ggagctcggt ttgtcggagt gtttcaattg gcccgtgggc gcagggccga agacgatgca
      181 gatggttttt cccggcggtg ttggacgttg ggacattcgt cgcagcacgt ttcgcgaagg
      241 cggacagcaa caccagttgc tcgtgcttac cgatctgagt cagacgttgc gcgaagaaga
      301 gcgtacagcg tggcagcggc tgttgcgtgt gttgggccat gagttgaata actcgctggc
      361 gccgatcaag tcagtcgcgg gaagtcttgc ggatttgatg cggcgcgatc cggagccgcc
      421 ggactggcgt gaagacatgc atcacgggtt ggcggtgatt tcgtcgcgtg ctgattcgct
      481 ggcgcggttt gtcgagtcgt attcgaagct cgcacggctg ccgccgccgc ggctcgagcc
      541 gttgaagatc ggaacgctgg tgtcgcgggt ggcgagtctc gagacacgct tgccggtgag
      601 tgttgtttcc gggcctgaag tggtggtgca aggcgacgat gtgcagttgg agcagttgct
      661 gatcaatctc gtgcggaacg ctgttgatgc gtcgatggag acgcgtggac gtgttgaggt
      721 gggttggcaa cagaacaatg ggaacgtcga agtgtggatt cgtgacgaag gcccgggact
      781 cgcgagcacg gctaatctgt ttgtgccgtt ctttacgacg aaggccgaag gatcggggat
      841 cggtcttgtg ttgtcgcgcc agatcgccga agcgcacggc gggacgttga cgctggagaa
      901 ccggcgacag tttcgcggct gcgaggcgcg gttgcgcttg ccgctgtgaa tccgtgtttt
      961 cgtcggccta aggacaggga ttgaaaccgg atttaggcct ttcgcgcgga gaagcgatag
     1021 atcgtggttg agcgatacgt cgcgcccttg cgcagggttg ttgttggaaa gtttggtctg
     1081 ttgggtgagt cggggtagtg ctgagtctcg aggcagaatc cggagcggcg cggataagcc
     1141 ttgccggatt tgcctggtcg cgagccgtcg agaaagttgc cggtgtagaa ttgcacgccg
     1201 ggttcggtgg tccagacttc catcacgcgc ccgctggtcg gttcataaac cgaggccgcc
     1261 tgtcgaagca tacccatgcg cccgttaatt acccacgtgt ggtcgtagcc gttgccgaac
     1321 ttgagttgct cattgtcctg gttgatgcgt tcgccgatcg tgtgtgctga gagaaagtcg
     1381 aacggtgtgc ccgcgacgtt cttcagttgg cccgtcggaa tcgaaccggc gtctgtcggc
     1441 acaaagcggc tcgccttgag cacgacacga tgatcgagaa tgtcgccgtt accttcgccg
     1501 gcgaggttga agtaagagtg atgcgtcagg ttcgtgaccg tgtctttgtc tgttgaagcg
     1561 gtgtaatcga tcttcagttc gttgt
//
LOCUS       DASWTX010001212         6599 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_235424, whole genome shotgun sequence.
ACCESSION   DASWTX010001212 DASWTX010000000
VERSION     DASWTX010001212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6599)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6599)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6599
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235424"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..474)
                     /locus_tag="VGD38_18440"
     CDS             complement(<1..474)
                     /locus_tag="VGD38_18440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730072.1"
                     /translation="MASSPTNYWGGFVTDPITAVLFFTWETFILERSVYISLGVYFGA
                     IFFVSLIEYLLHRYIFHGPRENMAQAGHLMHHDEPKALIGTPFLLTQAMWWSIACVAV
                     FVLKIPYALSFMAAFITGYVGYAIVHHHIHHHSRLRWFKKLQIHHNIHHRWPNVNY"
     gene            789..2339
                     /locus_tag="VGD38_18445"
     CDS             789..2339
                     /locus_tag="VGD38_18445"
                     /inference="COORDINATES: protein motif:HMM:TIGR02814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PfaD family polyunsaturated fatty
                     acid/polyketide biosynthesis protein"
                     /protein_id="HEY0730073.1"
                     /translation="MATFIPRVRESLHIVRNGKQGRIGLALGGEVVLPSMAREGDYAL
                     MATLPALYPEWLGDRSFCEVHGVRFPYIAGEMANGIATTRLVAAMGQAEMLGFFGAAG
                     LSFERVEQAVDELDRTLGNRAAWGVNLIHSPNEEALEDRVADLLIRRGVARVSASAFM
                     TLTPAVVRVAASGLRVDPASGRIIRRHHLFAKISRPEVAKLFMSPPPAEILQTLIGQG
                     LLNRQEADLAARIPVAEDITVEADSGGHTDNQALVAIFPTILALRDELTERYGYAQPI
                     RVGAAGGMGTPSAVAAAFALGAAYVLTGSINQAAVESGLSDAGKAMLAEADLSDVIMA
                     PAADMFELGIRVQVLKRGTMFGVRAAKLYEAYRSYSSLEAIPADVRTTLERDVMRATF
                     DEIWTETRRFWQTRDPSEAARAEGDPKHRMALVFRWYLGKSSRWAIDGETSRRADYQI
                     WCGPAMGSFNRWVRGSFLADPANRSVVQIARNLLEGAAVLTRAHQVRSYGVTVPESLF
                     QFRPRRLA"
     gene            2389..>6599
                     /locus_tag="VGD38_18450"
     CDS             2389..>6599
                     /locus_tag="VGD38_18450"
                     /inference="COORDINATES: protein motif:HMM:NF012901.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
                     /protein_id="HEY0730074.1"
                     /translation="MAPVAVVGVSALFPGSSDARGFWADIMAGRDLITDVPPTHWLID
                     DYYDPDPSAPDKTYCKRGAFISPVDFDPMEFGLPPNAVPSTDTTQILALMVAQQLLDD
                     VSQGAFASLDRERISVILGVTSGQQLLNSLVSRIQRPIWIKALRENGVPEDEAKKICD
                     DIARNYVSWDEASFPGLLGNVVAGRIANRFDLHGTNTITDAACASSIAAVSMGINELQ
                     LGQSDLVISGGVDMMNDIFMYMCFSKTPALSPSGDCRPFSDAADGTLLGEGIGMLALK
                     RLEDAERDGDRVYAVIRGVGTSSDGRSTSVYAPLPEGQLRAIRRAYEMAGYGPETVEL
                     VEAHGTGTKVGDVAEFEALRQAFSERSEDAQWCALGSVKSQIGHTKAAAGAAGLFKAI
                     MALHHKVLPPTIKIQRPNPAMDLAKSPFYLNTQARPWIRDGSHPRRAAVSSFGFGGSN
                     FHVTIEEYVPKDGKGAAAWRLQTSLAQLVLLSASSPAELISRCRAHESQEHFDASDNS
                     RLAVVAESSADLRNKLEQAVAMITNSPDAGFVTPTGISYESGPPNRGKIGFLFPGQGS
                     QYVGMGADVALYSDAARAVWDETSISFDGESVNRVVFPPPAFTDEERTAQVGKLTATE
                     WAQVAMGVQSAALLRVLSAVGLKPDCVAGHSFGEVTALYAAGAFDLKTLARIARRRGE
                     LMRDASSIPGAMTAVMGPIATVRRVLEETNSSVIIANHNAPAQCVLSGPTEAIEDIEK
                     TLSVRRVSTKRLPVATAFHSALVSASVKPFAAYLKEVGFVRPAIDVYGTADAAIYPQD
                     PQAIRDHLAAQIAQPVRFVDQIEAMYERGVRTFVEVGAGNVLTELVGTILGDREHRRI
                     NLDRKGAHGLTTLLTALGRLSVAGVSLDLSSLWADYKPASPKKSKKPAMVMQVSGVNY
                     GKPYPPPGGTKDLPPPNPPRPASAPPASPIPESPSAPVAPVAPLNTAHVSPMPEVHHA
                     WLAAYQEAQRQTAEAHAAYERTMAESHLAFLKTAETSLAALTSLLTGAPQQLSSSPVS
                     LPVVQPVAPVLAPAVSIPTDAAVRTPIPAKQPSPNGSPVSEPQPTIADAPAAQDLAAL
                     LLSVVAEKTGYPAEMLTTEMEMEADLGIDSIKRVEILSAMSERVPGLRELKMSDFGPL
                     RTLGQIVEYMNGHGKEALPTAKDASPANEPVAPDETEIKRFALRQVTAPATGMALAGL
                     FGVERVMITDEGTGLAEVLAKKLAERGIEASVVSTVPSDATAVIFLGGMRPVANIAVA
                     MDINREAFRAARAVASRFGSERGGVFINVQDTGGDFGLRGCDSTRAWLGGVSALVRTA
                     ALEWPNASVRTIDCERGERDLETIAAAICAELFEGGSTLEVGLRADGTRTTLATVAMP
                     AQPDASAPLGPDSVVVVSGGGRGVTA"
BASE COUNT         1293 a         1874 c         2072 g         1360 t
ORIGIN      
        1 atagtttacg tttggccagc ggtgatggat attgtggtga atttgcagct tcttgaacca
       61 gcgcagtcgc gaatggtgat ggatgtgatg gtgaacgatt gcgtagccca cgtaacccgt
      121 aatgaatgcc gccataaaac tcaacgcgta cggaatcttc agaacaaaaa ccgcgacaca
      181 agcaatggac caccacatcg cttgcgtgag caaaaacggc gttccgatga gggctttcgg
      241 ttcgtcgtga tgcatcaagt gtccggcctg ggccatgttc tcccgtgggc cgtgaaagat
      301 gtagcggtgc agcagatact caatcagact cacaaaaaag atcgccccga aataaacccc
      361 cagtgaaatg taaacacttc gctcgaggat gaaagtttcc caggtgaaga agagcacagc
      421 cgttatcgga tcggtaacga aaccgcccca ataattggtt ggactggagg ccacgcggtc
      481 cagtatttga ctctttgcac ccgataaacc cgaggaggtt tttgacagtt cggacggtcg
      541 gttcatggcg tcgacctttc attgtgcgag gaggagtcgg ttttgagcgg gcttatccta
      601 tcaaaacaac ccgtttttgt gttagggttt gcagcgaatt cgccaaaacg agcagatgcg
      661 gaataactcc gcattagact ctcaagcccc tcacggaggg tcagatgatc ttgagcactc
      721 catctgaact cacccccatt gggttatggc gctcctcgac ggcccagcct gtttttctag
      781 ccgatgagtt ggcgacattc attcctcgtg tgcgcgaatc gctgcacatc gttcgcaatg
      841 gcaaacaggg acgaatcggc ctcgcgttgg gcggcgaagt cgtgcttccg agcatggccc
      901 gggaaggcga ctacgcgctg atggcgacgc tgcccgcgtt gtatccggag tggctgggcg
      961 accgatcgtt ttgcgaggtt cacggcgtgc gttttcctta tattgccggc gaaatggcaa
     1021 acgggattgc gacgacgcgt ttggtggccg caatgggcca ggcggaaatg ctggggtttt
     1081 tcggcgctgc gggactctcg tttgagcggg tcgagcaggc ggttgacgaa ctggaccgca
     1141 cgttaggcaa tcgcgcggct tggggcgtga atttgattca ctcgccgaat gaagaagcgc
     1201 tcgaggatcg tgttgcggat ctgctgattc gacgcggtgt cgcgcgcgtt tcggcatcgg
     1261 ctttcatgac gttgacgccg gcggtggttc gcgtcgccgc gagcggtttg cgagtcgatc
     1321 cagcttccgg acgaattatt cgacgccatc atttgttcgc aaagatctcg cggccggaag
     1381 tcgcaaagct tttcatgtcg ccgccaccgg ccgagattct gcaaacgttg atcggccagg
     1441 gtttgctcaa caggcaggaa gctgatctcg ccgcacgaat accggttgcg gaagacatca
     1501 ctgtcgaagc agacagcggc ggccacactg ataaccaggc tctcgtcgcg atctttccca
     1561 cgattctcgc gctgcgagat gaactgacgg agcgttacgg atacgcgcaa ccgattcgcg
     1621 tcggcgccgc cggcggcatg ggcacgccgt ccgccgtcgc tgctgctttc gcactcggcg
     1681 cggcgtacgt tctgacggga tcgatcaatc aggctgcggt ggagtcgggg ctttcggacg
     1741 cgggcaaagc gatgttggcg gaagcggacc tgtcggacgt gatcatggcg cccgccgcgg
     1801 atatgtttga gctcggcatt cgagtgcagg tgctcaagcg cgggacgatg tttggcgttc
     1861 gtgccgcgaa actctacgag gcttaccgct cctattcgtc gctcgaagcg ataccggcag
     1921 atgtgcggac cacgctcgaa cgcgacgtta tgcgcgcgac cttcgacgaa atttggaccg
     1981 agacgcggcg cttctggcaa acccgcgatc cgtcagaagc agcccgcgct gaaggtgatc
     2041 caaaacatcg catggccctg gtgtttcgtt ggtatctcgg caagtcgagc cgttgggcca
     2101 tcgacggtga aacgtcgcgg cgggccgatt accagatttg gtgtggtccg gctatgggtt
     2161 cttttaatcg ctgggtgcgt ggatcgtttc tcgctgatcc cgccaaccgc agcgtcgttc
     2221 agatcgcgcg caatttgctg gagggcgccg cagttttgac gcgcgctcac caggtgcgca
     2281 gctatggcgt gacggttccg gaaagcttgt ttcagtttcg accgcgccgc ctggcctaat
     2341 cgcaggcctt ttcctctagg aggtcccatg tccaaaggtg atcgccggat ggctcctgtt
     2401 gccgtcgtcg gcgtcagcgc tttatttccg ggttccagtg acgcacgagg tttctgggca
     2461 gacatcatgg ctggccgcga tctgatcacc gatgtgccgc cgacgcactg gttgatcgac
     2521 gactactacg atcccgaccc gtccgcgcca gacaagacgt actgcaaacg cggcgcgttt
     2581 atttcgccgg tggatttcga tccgatggaa ttcgggctcc cacccaacgc ggtaccgtca
     2641 accgacacga cgcagatact cgcgctgatg gtggcgcagc agcttctcga cgacgtttca
     2701 cagggcgctt tcgcctcact cgatcgcgaa cgcatcagcg tgatcctggg cgtcacttcc
     2761 ggacagcaac tgctcaactc cttagtcagc cgcattcagc ggcccatttg gatcaaggcc
     2821 ctgcgcgaga acggcgttcc cgaagacgaa gcgaagaaga tctgcgacga catcgcgcgc
     2881 aactacgtca gttgggacga ggcgtcgttt cccggactgt tgggcaacgt cgtggccggc
     2941 cgcatcgcga atcgtttcga tctgcacggg accaacacga ttaccgatgc cgcgtgtgcg
     3001 agctcgatcg cggcggtgtc gatgggcatt aacgaactgc agctcgggca atcggatctc
     3061 gtgatctccg gcggcgtgga catgatgaac gacattttca tgtacatgtg cttcagcaaa
     3121 actccggcgc tttcgccgag tggtgattgc aggcctttct ccgatgcggc ggatgggacg
     3181 ctgctcggcg aaggcatcgg gatgttggcg ctcaaacggc tcgaggacgc ggagcgcgat
     3241 ggcgatcgag tgtatgcggt gattcgtggt gtgggcacgt cgtctgatgg gcgcagcacg
     3301 agtgtgtatg cacctttgcc ggaaggacaa ctgcgagcga tcaggcgtgc gtatgagatg
     3361 gcgggctatg gaccggagac ggtcgagctt gtcgaagcgc acggcacggg gacgaaggtt
     3421 ggtgacgtgg cggagtttga agcgttgcga caggcgtttt cggaacgctc tgaagatgcg
     3481 cagtggtgtg cgcttgggtc tgtgaagtcg cagatcggac acacgaaagc ggcggcagga
     3541 gcggcggggt tgttcaaagc gatcatggcc ctgcatcaca aagtgttacc gccgacgatc
     3601 aagattcaac gtccgaaccc ggcgatggat ctcgcgaaga gtccgtttta tctgaacacg
     3661 caagcgcggc cgtggatacg ggacgggtca catccgcggc gtgcggctgt gtcgagtttt
     3721 gggtttggcg ggagtaattt tcacgtcacg attgaggagt acgtgccgaa ggatggcaag
     3781 ggcgctgctg cgtggcggtt gcagacgtcg ctggcgcaat tggtattgct cagcgcatcg
     3841 agtccggcag aactgatttc gcgttgtcgc gcgcatgaat cgcaggagca cttcgatgca
     3901 agtgacaatt cgcgcctcgc cgtggtcgcc gagagttccg ctgaccttcg gaacaagctc
     3961 gaacaggcgg tggcgatgat tacgaattcg ccggatgcag gtttcgtgac gccgactggg
     4021 atcagctacg agagtggacc accgaaccgg ggcaagatcg ggtttctgtt tccggggcag
     4081 gggagtcagt acgttgggat gggcgcggat gtggcgcttt atagtgacgc ggcgcgcgcg
     4141 gtgtgggacg agacgagtat cagcttcgac ggcgaatcag ttaatcgggt cgtgtttccg
     4201 ccgccggcgt ttacggatga agagcgtacg gcgcaagtag gtaagcttac ggcaaccgag
     4261 tgggcgcagg ttgcgatggg tgttcagagt gcggcgctgt tgcgagtgct gtcggctgtt
     4321 ggtttgaagc ccgactgtgt tgcgggtcat agctttggtg aagtcacggc gttgtacgct
     4381 gccggcgcat ttgatttgaa gacgttagca agaatcgcgc ggcgccgcgg tgagctgatg
     4441 cgcgacgcgt cgtcaatacc gggcgcgatg acggcggtga tgggaccgat cgcaaccgtg
     4501 cgccgcgtgt tggaagagac taacagcagc gtgatcatcg cgaatcacaa tgcacccgcg
     4561 cagtgcgtgt tgtctggtcc aaccgaagcg atcgaggata tcgaaaagac ccttagcgta
     4621 cgcagggtga gcactaagcg cttgccggtc gcgacagcat ttcacagtgc gctggtatcg
     4681 gcttcagtca agccgtttgc tgcttacctc aaagaggttg gattcgtgcg tccggccatc
     4741 gacgtttacg gcactgctga cgcggcgatt tatccgcaag atccgcaggc aatccgtgac
     4801 catctcgcgg cccagatcgc ccaacctgtt cgctttgtgg atcagattga ggcgatgtac
     4861 gagcgcggcg tgcggacgtt tgttgaagtc ggggcgggca atgtattgac cgaactcgtg
     4921 ggaacgatac tcggcgaccg cgaacatcgc cggatcaatc tggatcgcaa aggcgcgcac
     4981 gggctcacaa cactactaac cgcgttgggc cggctttccg ttgcgggcgt gtcgctggat
     5041 ctcagcagtt tgtgggcgga ctacaaacct gcatcgccaa agaagtcgaa gaaacccgct
     5101 atggtgatgc aagtttccgg cgtcaactat ggcaagcctt atcctccgcc gggcggcact
     5161 aaagatcttc cgccgccaaa tccacctcgc cccgcatcag cgcctccagc ctcgccaatc
     5221 ccggaatctc cttccgctcc ggttgcacct gtagcccctt tgaatacagc gcacgtgtca
     5281 ccgatgcccg aagtacacca cgcctggctg gctgcttatc aggaagctca gcgtcagaca
     5341 gccgaagccc acgcagcata cgagcgcacc atggccgaga gccatctcgc attcttaaag
     5401 acagccgaaa cctcgcttgc tgcgttgacg tcactgctca ccggcgcgcc gcaacagttg
     5461 agcagctcac cagtttcgtt gccggtcgtg cagccagtcg cgcccgtgct tgcgccagcg
     5521 gtttcaatcc cgactgacgc tgcggttagg acgccaattc ccgcaaaaca gccttcgcct
     5581 aacggatcgc ccgtctccga gccacaaccc acgatcgccg acgcgcctgc ggcacaagat
     5641 ctcgccgcac tcttattaag cgtcgtcgcc gagaagaccg gctatccagc cgaaatgctc
     5701 acgaccgaaa tggagatgga agccgacctg ggaatcgact cgatcaagcg cgtcgaaatc
     5761 ctctccgcaa tgagcgaacg cgtgccgggc ctgcgtgaat tgaagatgag cgacttcggt
     5821 cctttgcgca cgctcggcca gatcgtcgag tacatgaacg gccacggcaa agaggctctg
     5881 cctacggcca aagatgcttc accagctaac gaaccggtcg caccagacga aaccgaaatc
     5941 aaacgcttcg ctttgcgtca ggtcaccgct cccgcaaccg gcatggccct cgccggattg
     6001 ttcggcgtcg agcgtgtcat gatcactgac gaaggcaccg gcttggctga agtgctcgcg
     6061 aaaaagctcg ccgaacgcgg gatcgaggca agtgtcgtgt ccaccgttcc aagcgacgcg
     6121 actgccgtca tcttcctcgg cggtatgcgt ccggttgcga atatcgccgt cgccatggac
     6181 atcaaccgcg aagcgtttcg cgccgcgcgc gccgtggctt cgcgcttcgg ttcagagcgc
     6241 ggcggcgtgt tcatcaacgt tcaggacacc ggcggtgatt ttggtctacg tggctgcgac
     6301 agcacgcgtg catggctcgg cggtgtctcg gcgttggttc gcaccgcagc gctcgagtgg
     6361 cccaacgcgt cagtcagaac gatcgactgc gaacgcggcg aacgcgatct cgaaacgatc
     6421 gccgccgcca tctgcgccga gcttttcgaa ggcggctcaa cactcgaagt cggcctgcgt
     6481 gctgacggca cgcgcacgac gctcgccacc gtcgcgatgc ctgcgcaacc cgatgcatca
     6541 gcgccgcttg gtcctgattc tgtcgtggta gtttccggtg gcggacgcgg tgtcaccgc
//
LOCUS       DASWTX010001213         3768 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_39054, whole genome shotgun sequence.
ACCESSION   DASWTX010001213 DASWTX010000000
VERSION     DASWTX010001213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3768)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3768)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3768
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39054"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(5..1372)
                     /locus_tag="VGD38_18455"
     CDS             complement(5..1372)
                     /locus_tag="VGD38_18455"
                     /inference="COORDINATES: protein motif:HMM:NF018938.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyclic terpene utilization AtuA family protein"
                     /protein_id="HEY0730075.1"
                     /translation="MKEKIRIAAGQGFWGDLPDAPVRQVEGGPIDYLMLDYLAEVTMS
                     IMQKQKARDPNAGYARDFIPLMKRILPACVERGIKVTANAGGVNVRGCANALIEVARE
                     LGLAGKVRIGIVTGDDILPRIDELLSRGIELRNMDTEEPLSTVRDSIQSANVYLGAAP
                     LVEALQQGAQIVITGRATDTGLTLAPLIHEFGWATDDWNHLAAGTIAGHIIECGAQAS
                     GGNCQYEWRNIPDLANVGFPIVEAAPDGTFVITKHEGTGGRVNVPSIKEQLVYEMGDP
                     HAYITPDVVADFTTIRLQDDGRDRVRVYGIEGRPATEFLKVSISYSAGFKAVGTLVYA
                     WPDAYEKAQVADKILRERLDRLGLRFDHILTEFVGVNATHGALAGEARADLPEVQLRF
                     GVRGQDRSAIERFTKEIAPLILTGPPAVTGFAGGRPKVEEIVAYWPALIPKSEIEPKV
                     EVLDA"
     gene            complement(1431..2492)
                     /locus_tag="VGD38_18460"
     CDS             complement(1431..2492)
                     /locus_tag="VGD38_18460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730076.1"
                     /translation="MRKRLTSSVLLLATLGFSLIVGDVLVLTAQDPQNPAPAKQQTPQ
                     TQPQTPETERQTPTTKKRTSKKRRGEATTTTATGDQTTTPADAMPAPGQQQTEPAQPA
                     QTTTPAQTANLAAEQTDLSGTYTGTFNCDVLGLSGPTTLTITGNQFTTADGRSGRIVA
                     TTTGGYTAVALQAGDTGAGTMAGTGATATPGATTTTTTATTGTTPAATGTTVGAAATP
                     MIVSMRARRSGDRLTLTPAAGAAMRCSFTPTRTARGRRSRQRTPAATGTEVSNPTTMP
                     DPSANPTTPTQPTTPEQPIPTQTPSPSPTPSPSPTPTGSPTPMPSPTPSGSPSPDPSP
                     TASPTPSPSPSPSPGRPRG"
     gene            3141..>3768
                     /locus_tag="VGD38_18465"
     CDS             3141..>3768
                     /locus_tag="VGD38_18465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730077.1"
                     /translation="MRRQLIFFLCFAVLLFSAIDTSSGQAHRPGKGLVARCLTDDQLA
                     KAVHSLSRDYNEAQEAQTLLRESARRSSTCRKQIIAAVMKAMDKPGLDISRDQASYYL
                     WREGAVLLGDLKATQSLDLLLAHISMTDGEWSSTMVHQPALAGIIRMGPVAIPKLEKL
                     LRNQDWQTRHDAVFCIANIGGPSALRAIKTAVPNESHSCVKGLMLASIK"
BASE COUNT          718 a         1090 c         1082 g          878 t
ORIGIN      
        1 actttcacgc gtcaagcacc tcaaccttgg gttctatctc gctcttcgga atcagcgccg
       61 gccagtacgc cacgatctct tcaaccttcg gacgcccacc cgcaaaaccc gtcaccgccg
      121 gtggaccagt cagaatcaac ggcgcaatct ccttcgtaaa acgctcaatc gcgctgcggt
      181 cctgaccgcg cacgccgaaa cgcagttgca cctccggcaa atcagcgcgc gcctcgccgg
      241 ccaacgcacc atgcgtcgca ttcacgccga cgaactcggt caagatgtga tcgaaacgca
      301 ggcccaagcg atcgagccgc tcccgcagaa tcttgtccgc gacctgcgct ttctcgtaag
      361 cgtccggcca cgcataaacc agcgtcccga ccgccttgaa accagcggag taactgatcg
      421 atactttcaa aaactcagtc gctggacgtc cttcaatgcc gtacacgcga acacgatcgc
      481 gtccatcgtc ctgcaaacga atcgtcgtga aatccgccac aacatccggc gtgatgtacg
      541 cgtgtggatc gcccatctcg taaacgagtt gttccttgat cgaaggaacg ttcacacgcc
      601 cgcccgtgcc ttcgtgcttc gtgatcacaa acgtgccgtc aggcgcggct tcaacgatcg
      661 gaaaaccgac gttcgccagg tctggaatgt tgcgccactc gtactggcaa tttcctcccg
      721 aagcctgcgc gccacactcg atgatgtggc ccgcgatcgt gcccgccgcg agatggttcc
      781 aatcatcagt ggcccaacca aactcgtgaa tcaacggcgc gagcgtgagt ccggtatcag
      841 tcgcgcgtcc cgtaatcacg atctgcgcgc cttgttgcaa agcttcgacc agcggcgccg
      901 cgccgagata gacgttcgca ctctgaatcg aatcgcgcac ggtcgacagc ggctcttccg
      961 tgtccatgtt gcgcaactcg atcccgcgcg aaagcagttc gtcaattcgc ggcaggatgt
     1021 cgtcgccggt gacgatgccg atgcgcacct ttccggcaag tccgagctca cgcgcgactt
     1081 caatcaacgc gttcgcacaa ccgcgtacgt tcacgccgcc ggcgtttgca gtgaccttga
     1141 tgccgcgttc gacgcacgcc ggcaggatcc gtttcatcaa cggaataaaa tcgcgcgcgt
     1201 atccggcgtt cggatcgcgc gctttctgtt tctgcatgat cgacatcgtg acttccgcca
     1261 gatagtcgag catcaggtaa tcgattggac caccctcaac ctggcgcacg ggcgcgtcag
     1321 ggagatctcc ccagaagcct tgaccggctg caatgcgaat cttttctttc atccgtgtta
     1381 tctgtgtcct acgaagacac agataacaca gatcgcacgc ataagactaa ttagcctcgc
     1441 ggccgtccgg ggctcgggct tggactcgga cttggtgtcg ggcttgccgt tggagaaggg
     1501 tcaggactcg ggctgccgct tggcgtcggg cttggcatcg gcgtcgggct gccggttggg
     1561 gttgggctcg ggcttggcgt cggactcgga ctcggagtct gagtcggtat tggttgttcc
     1621 ggtgtcgtcg gctgagttgg tgttgtcggg ttggctgatg gatccggcat tgtagtcgga
     1681 ttcgacactt cggttcccgt tgcggctggc gtgcgttggc gtgaacgacg tccgcgtgcg
     1741 gtgcgcgtcg gcgtaaacga acagcgcatc gccgcgcccg cggctggtgt cagcgtcagg
     1801 cgatcgccgg aacgacgcgc gcgcatggaa acgatcatcg gggttgcggc tgctccaaca
     1861 gttgttcccg tcgccgctgg agttgttccc gtagtggcag ttgttgtggt cgtcgttgct
     1921 cccggtgttg cggttgcgcc ggtgccagcc attgttcctg cgccggtgtc acctgcttgt
     1981 aatgcaacgg cagtgtaccc gcccgttgta gtcgcaacga tgcgtccgct tcttccgtcc
     2041 gccgttgtga actggtttcc ggtaatcgtc agtgtagtgg gaccgctgag tccgagaaca
     2101 tcgcaattga acgtgccggt gtaggtgcct gacagatcag tctgctctgc ggcaaggttg
     2161 gctgtctgtg ccggtgttgt ggtttgcgcc ggttgtgccg gttcggtttg ttgttggccg
     2221 ggcgcaggca tcgcgtctgc gggcgttgtt gtttgatcgc cggttgcagt tgtcgtggtc
     2281 gcctcgccgc gcctcttctt cgaagtgcgc ttcttggtcg ttggagtctg tcgttctgtt
     2341 tccggagtct gtggttgtgt ttgcggtgtt tgttgtttcg cgggcgctgg gttctgcgga
     2401 tcctgtgcgg tgagcaccag gacatcaccc acaataagcg aaaaacccag tgtcgcgagc
     2461 agcaacactg agctggtcaa tctcttgcgc atggacgtct cctcccgtgt tcgttcgggc
     2521 gcaagacctt cgcagcctgg cgccgagtat ttcttctatg tgaaaggggc tttacaacct
     2581 ggagggaaca cggatcttgt accactcacc gccccagatc tcaaccccca acctgctctc
     2641 aaattcattg acagcgcccc accctcgcag tagattgctg tcaaacctta cttgacgatg
     2701 acttcacctc ttacgaatct gatcatggcg cttaaatctc acaggagaac cttttatgtt
     2761 tcctcgcacg gctcaccgtt ctgtctctca cattgtttca ctaataattt ctgtttcgtt
     2821 gctggtgacg actgttgatt tttcggtaat agcaggcgcg caggtccagg ggcagcgggt
     2881 aggccagccg cggcgggaga agcctgaagg cgcgttgcct gatctcgagg aaccgtgatg
     2941 gggacactgt aagctggtgg gatcatccgg ggacgatagg cgcggacgtc cagggttact
     3001 acactaaacg gaacttttac atcaaggctt atcacggtga ccggcattgc gaagtggcat
     3061 ttcatctgac ctttagagta ttcagaagac aaattaccaa cgccggatgg ggccgcggta
     3121 cctacaagtg agggagttgt atgagaaggc aattgatttt ctttctctgt ttcgcggtgc
     3181 tcttgttttc tgctatcgac acttcttcag ggcaggcgca tcggccgggc aaaggactag
     3241 ttgcgcgctg cttaacggac gatcagcttg ccaaagccgt ccattcgtta tcgcgcgatt
     3301 acaatgaggc gcaggaggcc caaacccttt tacgtgaatc agccaggcgg tcttcgacct
     3361 gtcgaaaaca aatcattgcc gcggtgatga aggccatgga taaaccaggg ttggacatta
     3421 gccgggatca agccagttat tatttatggc gagaaggagc cgtattgctc ggcgacctga
     3481 aagctacgca atcccttgac ctgttactgg cacatatatc aatgacagac ggcgagtgga
     3541 gttcaacgat ggttcaccaa ccggccctgg cgggcatcat tcgaatgggt ccggttgcca
     3601 ttcccaaact agaaaagctg cttcggaacc aggattggca gaccaggcat gatgctgtct
     3661 tctgcatcgc taatatcggc ggaccttcgg ctctacgtgc aattaaaaca gcggtaccta
     3721 atgagtctca ttcatgcgtg aaaggcctga tgcttgcctc gatcaagg
//
LOCUS       DASWTX010001214         1656 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_127125, whole genome shotgun sequence.
ACCESSION   DASWTX010001214 DASWTX010000000
VERSION     DASWTX010001214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1656
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127125"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..950)
                     /locus_tag="VGD38_18470"
     CDS             complement(<1..950)
                     /locus_tag="VGD38_18470"
                     /inference="COORDINATES: protein motif:HMM:NF013595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730078.1"
                     /translation="MRKAIVLITLLLLLAGAAITIFLVREVRKPLPTSVAWRPHVTTF
                     AGDGAPLPRDNQQPTQAGFSDPFGIAIADDGTIYVADAGESNRIRKITPEGIVTTFAG
                     SSEGFADGAGAAAAFNTPSALAIDSNGNLYVADTGNNRIRKVTPQGEVSTIAGDGTAG
                     YADGPAAQARFNGPIGIAVVANGNVFIADTYNDRIRMISPDGQVSTVAGAGLGFSDGD
                     RNSSRFDTPCGVISLTDGSLIVADTGNDRLRKITPDGNVSTLPVNINGEEISNPVGLA
                     LTHDNFLYVTELDRSRVIQIAPDGTARVIAGRGSGFANGS"
     gene            complement(950..1603)
                     /locus_tag="VGD38_18475"
     CDS             complement(950..1603)
                     /locus_tag="VGD38_18475"
                     /inference="COORDINATES: protein motif:HMM:NF012523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloramphenicol acetyltransferase"
                     /protein_id="HEY0730079.1"
                     /translation="MPTYLDLATWPRRELFEFYRDFDKPYFNVCLRLDVTNLIKELRN
                     HPGISIALTYHYFALKAANEIEPFRYRLRNGQVLVHDVINGGTTLMLPNETFTLVYFD
                     YAETFAEFIGPAQRAVEEMKKDPVFQPRHDDDARIHCTTLPWISFTSFSHARNWRRED
                     SVPKISFGKFTQENDRTLMPFSVEVHHALVDGLHVGRYVTRIEEMLAQPEVYLNNSR"
BASE COUNT          352 a          450 c          501 g          353 t
ORIGIN      
        1 tccgagccgt tggcgaaacc tgagccacga ccggcgatga cgcgtgctgt gccgtcgggc
       61 gcgatctgga tcacgcgcga gcgatcgagt tccgtgacgt agagaaagtt gtcgtgtgtg
      121 agcgcgagtc caaccgggtt ggaaatttct tcgccgttga tgtttacagg cagggtgctg
      181 acgtttccat cgggagtgat tttgcgaaga cgatcgttac cggtatccgc aacaatcaac
      241 gatccgtctg ttaaggatat gacaccacac ggtgtgtcga accgactgct attccgatcc
      301 ccgtctgaaa atcccagccc ggctccggcg acagtgctca cctggccgtc aggcgagatc
      361 attcgaatgc gatcgttgta agtgtcggca ataaagacgt taccgttcgc aacgaccgcg
      421 atcccgattg gaccattgaa gcgcgcttgc gcggctggcc catcggcgta gccggcggtt
      481 ccgtcaccgg cgatcgtcga cacttcaccc tgcggcgtga ctttgcgaat gcggttgttg
      541 cccgtgtcgg cgacgtaaag attgccgttt gaatcgatcg ccaaagcaga cggcgtgttg
      601 aaagcagcag cggcgccggc gccatcggca aatccctcgc tgctgccggc aaacgtcgtc
      661 acaatcccct cgggcgtgat cttgcgaatg cgattgctct cgcctgcatc cgcgacgtaa
      721 atcgtcccgt cgtcagcgat cgcgattccg aacggatcgg agaatcccgc ttgggttggt
      781 tgttggttgt cgcgaggcaa cggcgcaccg tcgcctgcaa atgtagtgac gtgtggccgc
      841 caggcgacag acgtcggtaa cggtttccgt acctcacgaa caaggaagat agtgatcgca
      901 gcaccggcga gcaggagcag cagtgttatg aggacgatcg ctttacgcat caacgcgagt
      961 tgttcaaata gacttccggc tgcgcgagca tctcttcgat gcgcgtcaca tagcgtccga
     1021 cgtgcaggcc gtcaaccagc gcgtgatgca cttcgactga gaacggcatc agcgtgcgat
     1081 cgttctcctg cgtgaacttg ccgaacgaaa tcttcggcac ggaatcctcg cggcgccagt
     1141 tgcgtgcgtg cgaaaagctg gtgaacgaga tccacggtag cgtcgtgcaa tggatgcgtg
     1201 catcgtcatc gtggcgcggt tgaaaaacgg gatccttctt catctcttcg accgcgcgct
     1261 gcgctggccc aataaactcc gcgaacgttt cggcgtaatc gaaatagacg agcgtaaagg
     1321 tctcgtttgg cagcatgagt gtcgtgccac cgttgatgac gtcatgcacc agtacctggc
     1381 cgttacgcaa gcgatagcga aacggttcga tctcgttggc ggctttgagc gcgaagtagt
     1441 ggtaagtgag ggcgatgcta atgccgggat gattgcgtaa ttcttttatc agattcgtga
     1501 catcgagacg caaacagacg ttgaaataag gcttgtcgaa gtcgcgatag aactcgaaga
     1561 gctcccgccg cggccacgtg gccagatcga gataagtcgg catgtgcggg attgtactcg
     1621 aagatggcgg aactcatgag tgacaacaaa ttccgt
//
LOCUS       DASWTX010001215         6395 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_127135, whole genome shotgun sequence.
ACCESSION   DASWTX010001215 DASWTX010000000
VERSION     DASWTX010001215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6395
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127135"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..419)
                     /locus_tag="VGD38_18480"
     CDS             complement(<1..419)
                     /locus_tag="VGD38_18480"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY0730080.1"
                     /translation="MAAIAPKETVRESILDATDRLLARFGYRKMTVEDIAAEAGIGKG
                     TIYLHFSSKEEVVLSHVDRIVDRLKQQHLAVIARSKHTALERIRQMLLARVLFRFDSI
                     QHYTQSLNDLLAALRPGLLARRARYFEEEAQIFAEVIA"
     gene            complement(857..1822)
                     /locus_tag="VGD38_18485"
     CDS             complement(857..1822)
                     /locus_tag="VGD38_18485"
                     /inference="COORDINATES: protein motif:HMM:NF014704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009403 - toxin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEY0730081.1"
                     /translation="MGISAIDLLLVAVIILSLVNGYRRGFVHGVLDLAGWVLSLLVAL
                     RFYHPVAQWLGPRIDLWSEVWDQPIAFIVIGLLVSVAVHLVGHAALTRLPRDIQERPL
                     NQTLGLVPGLINGLLVAAILSALLLALPLSERLSESTRDSAIANRLAVYAERLEGQLR
                     PVFGEAIGRTLNLLTIRPDSDERVTLPFKVATTRPRPDLEKQMLDLVNQERAANGLRP
                     LAADPELTEVARRHSADMFARGYFAHDTPEGRTPFDRMEEANVQYLTAGENLALAPTL
                     SVAHTGLMNSPGHRANILRPQFGRVGIGIMDGGMRGLMVSQEFRN"
     gene            2120..5908
                     /locus_tag="VGD38_18490"
     CDS             2120..5908
                     /locus_tag="VGD38_18490"
                     /inference="COORDINATES: protein motif:HMM:NF028519.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0730082.1"
                     /translation="MTVTSYAQSGGSTIRGTVKDPNGNVIAGASVTITDPERNFTRTQ
                     TTNQDGGYVFTSIPPGTYRLEVTATGFKTATASGLAALVDTATEKDVQLEVGAVSETV
                     DVTAGAEAAINTSDASLGNSFERRRITELPLNANNVVGLLSLQPGVTRSGFVNGGRAD
                     QSNITLDGVDVNEQQDGLDVITDEAFASVLRVTRDSLQEFRVTTTNPNAEQGRSSGAQ
                     VSLVTRSGSNQWHGSLFEIHRNTVTTANDFFNNAAGVERPQLLRNIFGGSIGGPIKRD
                     RAFFFFTYEGFREATATSVVREVPLPTLGQGLVRYRTESGASDPGCPAGTPAGVNCLT
                     QQEIIDTYAAAGATPGINPNALAFLAAAAQRYPANDNTVGDGLNTSGFRFNARTPTEL
                     NTYIARFDFNLTNQQTLFLRGNYQNDTVTRAVYFSSDCSVPGDNIQCFPDTPPLTTWN
                     HPKGLAVGHVWTITPTLVNRFNYGLTRASFTQNGDSNENRVNFRFIFSPAAYQRTLRR
                     TTPVHNFVDDISWVRGTHTFGFGGNVRLIRNNRVSLGASFDEAIINPSFYNASGNVIL
                     QGFEDFQSGNDLRDALASVIGRYSQYSANLVYDANGQLQGVGTPTDRSFATEEYEGYF
                     QDSWRLRPNFTLNYGIRWSTSTPVYERNGLQVVPNVNLTEYFNQRVASSNAGTPFTDP
                     ITFVLGGKANNAAGYYEQDWNNWAPSVAFAWSPDFGDNFAGRLFGRNGKSVIRGGFRV
                     TYDRIGSALAVNFDLNNLAGFTSARNINANTFDVVDPDLGPLFNGLNPVVRTLPFPGS
                     TGPIPPTLNFPLTVPSDEDQRIETSLDQGITTPYNYSFNFSYGRELGKGLTFEASYVG
                     RFARSLLASRDIMQLNNIRDPQSGWTYYQAINYLVDQAYAGRPIGEVGEVAFFNNLFP
                     FMPEWWGDTTLTPTQAAYAFIAPEALGGAEVRDYTFLQLLWDDSPTCSTCPFGGGPAR
                     FNNMFYQPQFGALSAFSTIARSNYNSLQLSLRERLRDDVTFDFNYTYGHSFDNASGLQ
                     NSTSYGTAFIVNALDPEANYANSDFDARHIINANWVVGLPFGRGKKFLTNSSGFVDQI
                     LGGWQTTGIFRWNSGLPIQTPFDCCVWATNWNVQSNGVRVRPVQSSPTKDGANGTPNI
                     FSDPIEVYRSFRPARPGEVGDRNVLRAPGYIALDMGLYKAFRMPWEGHALQFRWEVFN
                     VTNTQRFDGLTISDLSLGSDPFLGGNPNSDFGRFTSTQAPLNETKAGRVMQFTLRYTF
                     "
     gene            5987..>6395
                     /locus_tag="VGD38_18495"
     CDS             5987..>6395
                     /locus_tag="VGD38_18495"
                     /inference="COORDINATES: protein motif:HMM:NF024867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY0730083.1"
                     /translation="MLQLLSISNIALIDDLRVEFDGALNLLTGETGSGKSIIVDALGV
                     LIGGRFTSELLKSGAERGSIEGLFSLTLNPQLEALLENSGLQNGDELIVRRELSATGR
                     NKIFINTPLATQTLLRDLRPFLVDIHGQGDQQTL"
BASE COUNT         1385 a         1944 c         1742 g         1324 t
ORIGIN      
        1 gcaatcactt cggcaaagat ctgcgcctct tcttcaaaat accgagcccg ccgcgctagc
       61 aagcccggac gcagcgcggc gagcagatcg ttgaggcttt gggtgtagtg ctggatgctg
      121 tcgaaacgga aaagcacccg cgccagcagc atctggcgaa tgcgctcgag agcggtgtgt
      181 tttgagcgcg cgatcaccgc cagatgctgc tgtttgagac gatcgacgat gcgatcgacg
      241 tgcgagagga cgacctcttc cttgctactg aagtgcaggt agatggtgcc cttgccgatc
      301 ccggcctcgg cggcaatgtc ctcaacggtc attttgcggt aaccaaatct ggcgagaaga
      361 cggtcagtag cgtcaaggat cgactccctg acagtctctt tcggtgcaat tgcggccatt
      421 tttgacagtt tgactcgtga ccagattcga attccagtca ctaagacgca atccggcggg
      481 aaaaggttcc aacagaaaat aatttttttg cgcggtgggt tttccaggtg agcttctgct
      541 gccggcgagc ttttgtccgg cgaccttggc ccggtgacct ttcgcgccgc ccctgagcta
      601 tgtgcaacct taactagtcg gatcctaccg acgtagtcgg tagtgctttc atacccaacc
      661 taaaccgcca aaccgttaca ccaatcccac caacggagtt ggtggtcctt ttcataccct
      721 acctacaacc gcggcaggct gagtatgaac aatccaccga ctgcgtcggt gggattgaat
      781 cttcaagtac ttttgtttag gtaggatctg aagttaccac cgactacgtc ggtgggattg
      841 tccgagccgg acgcagctag tttctaaatt cttgcgagac catcaggccg cgcatgccgc
      901 cgtccatgat gccgatgccc acgcggccga attgcggacg caggatgttg gcgcggtggc
      961 cgggagagtt catcaggccg gtgtgggcga ccgagagggt tggcgccagg gcgaggttct
     1021 cgccggcggt tagatattgg acgtttgcct cttccatgcg atcgaagggc gtgcggcctt
     1081 cgggtgtgtc gtgcgcgaaa tagccgcgcg cgaacatgtc ggctgaatga cgccgggcga
     1141 cttcggtcaa ctccggatcg gcagctaacg gccgaagccc gttggcggcg cgctcctggt
     1201 taaccaggtc gagcatctgt ttttccaggt caggccgcgg gcgcgtggtc gcgaccttga
     1261 acggcaacgt cactcgttcg tccgagtccg gacgaatcgt cagcaggttc agtgtgcggc
     1321 caatcgcctc accaaacacc gggcgaagct gaccttcgag ccgttcagcg taaacggcga
     1381 gacgattcgc gatcgcactg tcgcgcgtgc tctcactcaa acgttcactt agaggcaacg
     1441 ccaacagcag cgccgacaaa atcgccgcga cgagcaatcc gttaattaat ccgggaacca
     1501 gaccgagtgt ttgattgagt ggacgttcct gaatgtctcg tggcaaacgc gtgagcgccg
     1561 cgtgtccgac aagatgaacc gcgaccgaaa ccagcaatcc gatcactatg aacgcgatcg
     1621 gttgatccca aacttccgac cacagatcga tacgcggccc gagccattgc gcgacgggat
     1681 gataaaaacg caatgctacg agcagactca aaacccatcc ggcgagatcc agcacaccat
     1741 ggacgaagcc acggcgatag ccgttgacca aactaagaat gatgactgca acgagcagca
     1801 gatcgatcgc gcttatgccc acaaacacac accttactaa atgctgaaca cgtcattcaa
     1861 actttcgcag ttcaaaaact gcaatgtaac tggagttttt ggactcgtta gttggatgta
     1921 acgcgcactc attcgtttct gttcgcaaat ttctaaagag aaatgctctt ttataagttg
     1981 gaacactttc tgcatccgcg aaaacaaacc attcgtctcc ccctgaatgt gtaggtgaaa
     2041 caaaaacacg gagaaaaaca tgagcaacac caacactatt cgagtgtctt ctctagcttc
     2101 gtttcttgtt ctaatactaa tgaccgtcac gagctacgct cagtccggtg gctcgactat
     2161 tcgcggcact gttaaagacc cgaatggcaa cgtgatcgcc ggcgcttcgg tcaccatcac
     2221 agatccggaa aggaatttca cccggaccca aaccaccaac caggacggcg gctacgtttt
     2281 cacttccatt ccgccgggca cataccggct cgaagtcacc gccaccggtt tcaaaaccgc
     2341 tactgcttcc ggactagccg cgctcgtcga cacggccact gaaaaggacg tgcaactcga
     2401 agtcggcgct gtttcggaaa cggttgacgt caccgcgggc gcggaagcgg caatcaacac
     2461 cagcgacgcc agtctcggaa attctttcga acggcgccgc atcactgagc tgccgctaaa
     2521 cgcgaacaac gtcgttggct tgttgtcgct gcaacccggc gtgacccgca gcggcttcgt
     2581 caacggcggc cgcgccgacc agtcgaacat cacgctcgac ggcgtcgacg ttaacgaaca
     2641 acaggacggt ctcgacgtca tcactgacga agcgtttgcg agcgtgttgc gcgtcacgcg
     2701 cgactcgctg caggagtttc gtgtaacgac gaccaatcca aacgcggaac agggacgttc
     2761 gtcaggcgcg caggtatcgc tcgtgacgcg ttccggctcg aaccaatggc acggatcgtt
     2821 gtttgaaatt catcgcaaca ccgtcaccac cgccaacgac ttcttcaaca acgccgcggg
     2881 cgtcgaacgg ccgcagttgt tgcgaaacat cttcggcgga tcgattggcg gtcccatcaa
     2941 acgcgatcgc gcgttcttct tctttacgta cgaaggtttt cgcgaagcga ccgcgacatc
     3001 ggtcgtgcgt gaagtgccgc tgccgacgtt gggacagggc ctagttcgtt atcgcactga
     3061 aagcggcgcg agcgatcccg gttgtccggc gggaacacca gcaggtgtga actgtctgac
     3121 gcaacaggaa atcatcgaca cttacgccgc cgccggcgcc acccccggca tcaaccccaa
     3181 cgcgctcgcg tttctcgctg ccgcggccca acgctatcca gcgaacgaca acaccgtcgg
     3241 cgacggcttg aacaccagcg gttttcgctt caacgcccgc acgccgaccg agttgaacac
     3301 ttacatcgcg cggttcgact tcaacctgac gaaccagcag acacttttcc tgcgcggcaa
     3361 ctatcagaac gacacagtaa cccgcgcggt ctacttcagt tctgattgca gcgttccggg
     3421 cgacaacatt cagtgcttcc ccgacacgcc gccgttgact acctggaacc atccgaaagg
     3481 tctcgcggtg ggccacgttt ggaccatcac cccgacgctc gtcaatcgtt tcaactacgg
     3541 cttgacgcgc gcgtcgttca cgcagaacgg cgactcgaac gagaaccgcg tgaacttccg
     3601 gttcatcttc tcgcccgctg cttaccaacg cacgctgcga cgcaccacgc cggtgcacaa
     3661 ctttgtggac gacatctcat gggtgcgcgg cacacacacg ttcggcttcg gcggcaacgt
     3721 tcgtctgatt cgcaacaacc gcgtttcgct cggcgcttcg tttgacgaag cgatcatcaa
     3781 cccatcgttc tacaacgcgt ccggcaacgt gatcctgcag ggcttcgaag acttccagag
     3841 tggaaacgat ctgcgcgacg cgctcgcttc agtgatcggc cgttattcgc agtacagcgc
     3901 caatctcgtt tacgacgcga acggtcagct tcagggagtc ggcacgccaa ccgatcgttc
     3961 gttcgccacc gaagaatacg aaggctactt ccaggattcg tggcggctac gtccaaactt
     4021 cacgttgaac tacggcattc gctggtccac ctcgacaccg gtttacgaac gcaacggttt
     4081 gcaagtcgtt ccgaatgtta acctgactga gtatttcaac cagcgcgtcg cgagctccaa
     4141 cgcgggcacg cctttcaccg atccgatcac gtttgttctc ggcggcaaag ccaacaacgc
     4201 agccggatac tacgaacagg attggaacaa ctgggcgccg tcagtcgcgt ttgcgtggtc
     4261 gcctgatttt ggcgataact tcgccggcag gcttttcgga cgaaacggca agagcgtgat
     4321 ccgcggcggt ttccgtgtga cttacgaccg catcggcagc gcactcgccg tgaacttcga
     4381 cctcaacaac ctcgcgggct tcacgtccgc tcgcaacatc aacgcgaaca cgttcgatgt
     4441 ggtcgatccg gacctcggac cgctcttcaa cggtttgaat ccggtcgttc gcacgctgcc
     4501 gttccccggc tccaccggcc caatcccgcc gactttgaac ttcccgctga cggttccgtc
     4561 agatgaagat caacgcatcg aaacgtcttt ggaccagggc atcaccacgc cgtacaacta
     4621 cagcttcaac ttctcgtacg gacgcgagct cggcaaagga ctgacgtttg aagccagcta
     4681 cgtcggacgt ttcgctcgca gcctgcttgc ctcgcgcgac atcatgcagt tgaacaacat
     4741 ccgcgatccg cagtcaggct ggacgtacta ccaggcgatc aactatctcg tggaccaggc
     4801 ttacgcgggc cggcccatcg gcgaggttgg cgaggtcgct ttcttcaaca acctcttccc
     4861 gttcatgccc gaatggtggg gcgacacgac gctgactccg actcaagcgg cgtatgcctt
     4921 catcgcgcct gaagctctcg gaggcgccga agtcagagac tacacgttcc tgcaattgct
     4981 ctgggacgat agtccgacct gctcgacctg cccgtttggc ggtggacctg cgcgcttcaa
     5041 caacatgttc tatcaaccgc agtttggcgc gttgtcggcg ttctcgacca tcgctcgttc
     5101 aaactacaac tcattgcagc tcagcttgcg cgagcggctg cgcgatgacg tgacgtttga
     5161 cttcaactac acctacggtc actcgttcga caatgcttcg ggactgcaaa actcgaccag
     5221 ctacggcacg gcgttcatcg tcaacgctct cgatccggaa gcaaactacg ccaactcgga
     5281 ttttgatgcc cggcacatca tcaatgcgaa ctgggtggtc ggacttccgt tcggacgtgg
     5341 caagaagttc ctgaccaaca gcagcggttt cgtggaccag atcctgggcg gctggcaaac
     5401 gacgggtatt ttccgttgga acagtggcct gccgatccag acgccattcg attgctgtgt
     5461 gtgggccacg aactggaacg tgcagtcgaa cggcgttcgc gttcgtccgg tgcaatcgtc
     5521 gccgacgaaa gacggcgcca acggcacgcc gaacatcttc agcgatccga tcgaagtcta
     5581 tcgcagcttc agaccggcgc gtccgggcga agtcggcgat cgaaacgtgt tgcgcgcgcc
     5641 gggttacatc gcgctcgaca tgggacttta caaggcgttc cggatgccgt gggaaggtca
     5701 cgcgctgcaa ttccgttggg aagttttcaa cgtcaccaac acgcagcggt ttgacgggct
     5761 cacgatttcc gatctgagtt tgggaagcga tccattcctg ggcggcaatc ccaactccga
     5821 ctttggacgg ttcacctcca cgcaagcccc gctcaacgaa accaaggcgg gacgcgtaat
     5881 gcagttcacg ctgcgttata cgttctagag cggccgcgga ttttaacgga cctacgcgaa
     5941 atgtaattgc atatccgtgt aggtccgttt aatctgtggc gcgttaatgc tacaactcct
     6001 cagcatttcc aacattgcgc tgatcgatga cctgcgggtg gagtttgacg gtgcgttgaa
     6061 cttgctcaca ggtgaaacgg gatcgggaaa gtcgatcatc gtcgatgcgc ttggcgttct
     6121 gatcggcggc cggttcacga gcgagctgct gaagtcaggc gctgaacgcg gatcgatcga
     6181 ggggttgttt tcattaactc tcaaccctca actcgaagcc ctgctcgaaa actcgggact
     6241 gcaaaacggc gacgaattga tcgttcgccg cgaactctcc gccacgggcc gcaacaagat
     6301 cttcatcaac actccactcg cgacgcagac gctcttgcgc gacctgcgac cgtttctcgt
     6361 cgacattcat ggacagggcg atcagcagac gcttt
//
LOCUS       DASWTX010001216         3547 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_60502, whole genome shotgun sequence.
ACCESSION   DASWTX010001216 DASWTX010000000
VERSION     DASWTX010001216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3547
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60502"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2752
                     /locus_tag="VGD38_18500"
     CDS             <1..2752
                     /locus_tag="VGD38_18500"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY0730084.1"
                     /translation="VSLPLIAVAQQNVTSGTLSGRIEDSSGSVVSGANVTATNLETNQ
                     QLATTTDDEGRYRFPYLRTGDYDLKVEATGFAAVTKQLTVLVGQSLELPFKLDVAGVS
                     AQVHIGNTDVPLVETVRTQITETIRPREIQELPLNGRNYLDLALLVPGVSPTNTGSNQ
                     RFAETSAVPGQGLSIAGQRNLYNSFIVDGVSANDDAADLTGTYYSEEVIDQFQVVTSG
                     GIAEFGRASGGVVNILTRSGSNDLRGNLYGFFRNQRFDARNPLAPTKDLLTQAQYGGT
                     LGGPLRHDRTFFFTNFEQTRRNYSAVLTIAPAAVNSINNRLRAVNYGGPLIETGVVPA
                     SFDTTNFFARIDHRINARNQLSARYSLYHIEAVNSRTVGGLNSVSRGSGLNDTDQTLQ
                     VSNVTTLSSRTINEARFQFTNSRLSAPINDAIGPAVNISGVANFGAATFSPLARDINL
                     LEVVDNVSTQLDEHSLKFGGGFLYNRLNILFPGAFQGVYNFTSLNNFLNGVYNNYQQA
                     FGVPEQLQSNPNFGVFVQDEWRVRRDLTINAGLRYDVQYLPDPIETDTNNIAPRLGIV
                     YAPGDRKTVIRASYGLYYDRIPLRATSNALQRDGSKYLVVQLAPALPGAPGFPNVLTV
                     QPGSLTTRPNITRIDPNIEVSYSQQGNFQIERELPWDAVVSVGYLHVRAKHLILSRNV
                     NVPRFPASAGIPNLGRPDPNWGNISRFESSGNSYYDGMVVSFNQRATRWATVRLSYTL
                     SKTIDDAGNFFFSSPQNNFDVSDDRGLSDNDQRHRLVLSGTLEAPEQGKAKGFERLLR
                     GFQFGYIFTYGSRLPFNVLLGTDRNFDTNLNDRPVGVGRNAGRGFDFASLDLRVSRRF
                     KLTERVDLQLLAEGFNVLNRPNFGVPNNTFGSGVNPLPTFGQPTAAFDPRQFQFGMKV
                     SF"
     gene            2759..>3547
                     /locus_tag="VGD38_18505"
     CDS             2759..>3547
                     /locus_tag="VGD38_18505"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HEY0730085.1"
                     /translation="MKQLLGLGVLVILVLLTGCHRFAADASRATAFQPKQISAPDVDA
                     AEPVTASAPDGGFYVAWVNHNANSKSDVMLARYDSEGVTSGSPVMVNQQAGVATAWRG
                     DPPSIAVADKSVYVLWTARVESDDKKGTDLYLSVSHDQGKTFASPVRVNDDKLIGAHG
                     MHSLAVSNDGKIYAAWLDERNIITPKPSKHAGGHHMESNRELFVTHSTDGGKTFSANR
                     KVAENACPCCKTALAVSADGTLYAGWRQVLPGNFRHIAVASSTDG"
BASE COUNT          736 a         1082 c          991 g          738 t
ORIGIN      
        1 ggtctcgctg cccctgatcg ccgtcgcaca acagaacgtc acctcgggca cgctgagtgg
       61 ccgcattgaa gattcaagcg gctccgtggt gagcggagca aacgtcaccg ccaccaacct
      121 cgagacgaat caacaactgg caaccacaac cgacgacgaa ggtcgttacc gctttcctta
      181 cctgcgcacc ggcgactatg acctgaaggt cgaagccacg ggctttgccg ccgtcaccaa
      241 acagctcacc gtactggtgg gtcaatcgct cgagttaccg ttcaaactcg acgtcgcggg
      301 agtttcagca caagtacata tcggcaacac cgacgtgccg ctcgtcgaaa cagtgcgcac
      361 gcagatcacc gaaacgattc gcccgcgcga gattcaggaa ctgccgctga acggacgcaa
      421 ttatctcgac ctggctttgc tcgtccccgg cgtttcaccg acaaacaccg gcagcaatca
      481 acgctttgcc gaaacgtccg ccgtgcccgg tcagggtctc tcgatcgcgg gccagcgcaa
      541 tctctacaac agctttatcg tcgacggcgt ctcggctaac gacgacgccg cggacctgac
      601 cggcacgtac tacagcgaag aggtcatcga tcagtttcag gtcgtgactt cgggcggtat
      661 cgcggagttt ggccgcgcct cgggcggcgt ggtcaacatc ctgacgcgtt cgggcagcaa
      721 cgatctgcgc ggaaacctct acggtttctt ccgcaatcaa cgcttcgacg cgcgcaatcc
      781 gctcgcgccg acgaaagatc ttttgactca ggctcagtac ggcggcactc tcggcggccc
      841 gctgcgtcac gaccgtactt tcttcttcac taacttcgaa caaactcgca gaaactattc
      901 tgccgttctc accatcgctc ccgcagccgt aaacagcatc aacaacagac tgcgcgcggt
      961 taattatggc ggaccattga tcgagaccgg cgtcgtgccg gcgagtttcg acacgaccaa
     1021 ctttttcgct cgcatcgatc atcgcatcaa cgcgcgtaat cagctcagcg cacgttacag
     1081 cctgtatcac atcgaagccg tgaactcgcg caccgtcggc ggcttgaact ccgtcagccg
     1141 cggcagcgga ctcaacgaca ccgatcagac gctgcaagtc agtaacgtga ccacgctgag
     1201 cagccgcacg atcaacgaag cgcggttcca attcacgaac agccgtctta gtgctcccat
     1261 caacgacgcg atcggccccg cggtcaacat ttccggcgtc gccaacttcg gcgccgcaac
     1321 gttctcaccg ctcgcgcgcg acatcaatct cctcgaagtc gtcgacaacg tctcgactca
     1381 gctcgacgaa cattcactca agttcggcgg cggctttctc tacaaccgtc tgaacatact
     1441 tttcccgggc gctttccagg gcgtctacaa cttcacgtcg ctcaataatt ttctgaacgg
     1501 cgtttacaac aattaccagc aggcgtttgg cgttcccgaa cagcttcagt cgaatccgaa
     1561 cttcggcgtg ttcgtgcagg acgagtggcg cgtgcgccgc gatctgacga tcaatgcggg
     1621 attgcggtac gacgtgcagt atctgcccga tccgatcgag acggacacga acaacatcgc
     1681 gccgcggctc ggtatcgttt acgcgccggg cgatcgcaag actgtgattc gggctagtta
     1741 cgggctttac tacgatcgta tcccgctgcg ggcgacctcg aatgcgttgc agcgtgacgg
     1801 ttcgaagtat ctcgtggtcc aactcgcgcc ggcgctgcct ggcgctcctg ggtttccgaa
     1861 tgttctgacc gttcaacctg gctcactcac aaccaggcca aacatcacgc gcatcgatcc
     1921 gaatatcgaa gtgagctaca gccaacaggg caattttcag atcgagcgtg agctgccgtg
     1981 ggatgccgtg gtgtccgttg gttacctgca cgtccgcgcg aagcacctga ttctttcgcg
     2041 taacgtgaac gtgccgcggt tccccgcttc ggcgggcatt ccaaatctcg gccggcccga
     2101 tccgaactgg ggcaacatct cgcgtttcga aagctccggc aattcttact acgacggcat
     2161 ggtcgtttct ttcaatcaac gcgcgacgcg ttgggcgacg gtgcggttgt cgtacacgtt
     2221 gtcgaagacg attgacgatg cgggaaattt cttcttctcg agcccgcaga acaatttcga
     2281 cgtcagcgac gatcgcgggc tttctgataa cgatcagcgc catcggctcg tgttgagcgg
     2341 tacgttggaa gcgcctgagc aaggcaaggc aaaaggcttt gaacggctgc tgcgcgggtt
     2401 tcagttcggg tacattttta cttacggctc gcgtttgccg ttcaacgtgt tgttggggac
     2461 ggatcgaaac ttcgacacga acctcaacga tcgtcctgtt ggcgttggga gaaatgcagg
     2521 ccgtggtttt gacttcgcgt cactcgacct gcgtgtgagc cgccggttca agttgacgga
     2581 acgcgtcgac ctgcaattgc tcgccgaagg cttcaacgtt ttgaatcggc caaactttgg
     2641 cgtgccgaat aatacgttcg gctccggagt taatcccctg ccgaccttcg gtcaaccgac
     2701 agcggcgttc gatccgcgac aattccagtt tggaatgaaa gtgagttttt aatcacacat
     2761 gaaacagctc ctggggttgg gtgttctcgt tattttggtt ttgctgaccg gttgtcatcg
     2821 tttcgcggcg gacgcatctc gcgcgacggc gtttcagccg aaacagatct cagcacccga
     2881 tgtcgatgcc gccgaaccgg tgaccgcgag tgcgccggac ggcggcttct acgtcgcctg
     2941 ggtgaatcac aacgcaaaca gtaagtcaga cgtgatgctc gcgcgttacg acagcgaggg
     3001 cgtgacgagt ggttcgccgg ttatggtgaa ccagcaggcg ggtgtcgcga ccgcatggcg
     3061 cggcgatccg ccgagcatcg ccgtcgcaga taaatcggtg tacgtgctgt ggaccgcccg
     3121 tgtcgagtca gacgataaga agggcaccga tctttatctc tccgtctcgc acgatcaggg
     3181 aaagacgttt gcttcgcccg tgagagtgaa cgacgacaaa cttatcggcg ctcacggcat
     3241 gcactcgctc gcagtttcaa acgacggaaa gatctacgcc gcgtggctcg acgagcggaa
     3301 catcatcacg ccgaagcctt cgaagcacgc cggcggccat cacatggaaa gcaatcgcga
     3361 gctcttcgtc acgcattcaa ccgatggcgg gaaaacgttc tcggcaaatc gcaaggtcgc
     3421 tgaaaatgcg tgtccgtgtt gcaagacggc gctcgctgtt tcagctgacg gcacgttgta
     3481 cgcgggttgg cggcaagtgc tcccgggaaa cttccggcac atcgcagttg cgagctcgac
     3541 tgatggc
//
LOCUS       DASWTX010001217         2195 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_172821, whole genome shotgun sequence.
ACCESSION   DASWTX010001217 DASWTX010000000
VERSION     DASWTX010001217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2195
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172821"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..287)
                     /locus_tag="VGD38_18510"
     CDS             complement(<1..287)
                     /locus_tag="VGD38_18510"
                     /inference="COORDINATES: protein motif:HMM:NF016274.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004668 - protein-arginine deiminase
                     activity [Evidence IEA];
                     GO_process: GO:0009446 - putrescine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HEY0730086.1"
                     /translation="MAAQPHKTPAELGFYMPAEWHPHAGTWLTWPKDPETWPDLVERV
                     EEIYLEIIAALAPHETVNLLVDDEETEQAVRRRFNFPAAENVRFHRIPTVDS"
     gene            complement(296..553)
                     /locus_tag="VGD38_18515"
     CDS             complement(296..553)
                     /locus_tag="VGD38_18515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730087.1"
                     /translation="MKYGLVDFVGLIGVVLIVITYLLLQLNKLSSNDLSYSLFNAIGA
                     SLISFTLLVNYNLPALLMEVFWVLISCFGIYRYFRFKALGP"
     gene            complement(550..1440)
                     /locus_tag="VGD38_18520"
     CDS             complement(550..1440)
                     /locus_tag="VGD38_18520"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase"
                     /protein_id="HEY0730088.1"
                     /translation="MPKKRGDSNVTTVGLVQMSCVPEPEKNLKKAIEGIKDAAKRGAQ
                     IVCLQELFRSQYFCQTEDIQLFKLAETIPGPSTEALSKVAKQKNVVIVASLFEKRTAG
                     VYHNTAVMIDASGKIVGKYRKMHIPDDPLYYEKFYFTPGDLGFQTHDTSYGKIGTLVC
                     WDQWFPEAARLTALGGAQFLFYPTAIGWLPDEKPEVNDAQHSAWETIQRAHAIANGIY
                     VVVVNRVGREGKLTFWGQSFVADPFGRIIAKASADQEEVLVVECDLSVIEETRQNWPF
                     LRDRRIDAYEGLRFRFGDHL"
     gene            1539..>2195
                     /locus_tag="VGD38_18525"
     CDS             1539..>2195
                     /locus_tag="VGD38_18525"
                     /inference="COORDINATES: protein motif:HMM:NF014790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEY0730089.1"
                     /translation="MIDFELTEDHKALVQTVREFAQKEVAPFIKEWDEKQEFQPAVLR
                     KMAELNLLGVCIPEEYGGAGFDYISLGLVCEELEAVDTFLRVIMSVHTGLNSLTLYTW
                     GSEAQKQKYLVPQAKGEKIATYGLTEPGAGSDVVGARSTARRDGNEWVLNGEKMWISL
                     ADVADNFLFFCWTDEEKRRKRDHTGMSCFIVERSMKGFSSGTIHGKLGIRAGNTGYFS
                     L"
BASE COUNT          465 a          550 c          671 g          509 t
ORIGIN      
        1 gagtcgactg tcgggatacg gtgaaagcgc acgttttcgg ccgcggggaa gttaaaacgg
       61 cgccgcactg cttgttccgt ttcttcatcg tcgaccagaa ggttcaccgt ttcatgcggt
      121 gcgagcgctg cgatgatctc gagatagatc tcctcgactc gttccaccag gtcgggccac
      181 gtttccggat ctttgggcca tgttagccac gtgccggcgt gtgggtgcca ttcggcgggc
      241 atgtaaaaac cgagttctgc tggtgttttg tgtggttgtg cggccatcgc ttgttctacg
      301 gaccgagagc tttgaagcgg aagtagcggt agatcccgaa acaactgatc agaacccaga
      361 agacttccat caggagggcg ggaagattgt agttaaccag cagggtgaag gaaataagac
      421 tggccccgat ggcgttgaaa agtgaatagg aaaggtcgtt gctgctgagc ttgttcagtt
      481 gcaacaacag gtatgtgatc acgatcagca cgacgccaat gaggccgacg aagtcgacaa
      541 gcccgtactt cataagtggt caccaaatct aaagcgcagg ccttcgtaag cgtcgatgcg
      601 gcggtcgcga aggaacggcc agttttgccg ggtctcttcg atgactgaga gatcgcattc
      661 cacgaccagc acttcttcct gatcggcaga tgccttcgcg atgatgcggc caaagggatc
      721 ggccacaaac gactggcccc aaaaagtcag tttgccttcg cggccgacgc gattgacgac
      781 cacgacataa attccgttgg cgatcgcgtg cgcgcgttga atcgtttccc aagcggaatg
      841 ctgtgcgtcg tttacttccg gcttttcatc cggtagccag ccgatggccg tcgggtaaaa
      901 cagaaactga gcgccgccga gagcagtgag ccgggccgct tcggggaacc attggtccca
      961 gcagacgagt gtgccgattt tgccgtagct cgtgtcgtga gtttgaaaac ctagatcgcc
     1021 cggcgtgaaa tagaacttct cgtagtacag gggatcgtcg ggaatgtgca tcttgcgata
     1081 cttgccgacg atcttgcccg aagcgtcgat cattacggcc gtgttgtgat aaacacccgc
     1141 ggtgcgcttc tcgaatagcg aggctacgat cacgacgttt ttctgcttcg cgaccttgct
     1201 cagagcttcc gtcgagggac cggggatcgt ttccgcaagt ttgaagagct gaatgtcttc
     1261 ggtttggcag aagtattgcg agcggaaaag ctcctgaaga cagacgatct gggctccgcg
     1321 tttggccgca tccttgattc cttcgatcgc ttttttgagg ttcttctcgg gttcgggcac
     1381 gcacgacatc tgcaccaatc ccaccgtagt gacgttactg tccccgcgtt ttttcggcat
     1441 gtcgcgagta tagcaaagcg gcgccttttg gacattgcag tttcgacttg agtaagatgt
     1501 ccggtcattt ttagcaccct aatgaaaaga gtagtgaaat gatcgatttt gaactgaccg
     1561 aagaccacaa ggcgctcgtg cagaccgtgc gggagtttgc gcagaaggaa gtcgcgccgt
     1621 ttatcaagga gtgggacgag aagcaggagt ttcagcctgc cgttttgcgc aagatggccg
     1681 agctcaacct gctcggtgtt tgcattcccg aggagtacgg cggcgctggt tttgactaca
     1741 tttcgctggg gctggtttgc gaagagttgg aggcggtcga cacgttcctg cgcgtgatca
     1801 tgtcggtgca taccgggttg aattcgctga cgctttacac gtggggcagt gaagcacaaa
     1861 agcaaaagta tctggtgccg caggccaagg gcgaaaagat tgctacctac ggactgactg
     1921 agccaggcgc ggggtcggat gtggttggag cgcgctcgac cgctcgccgc gatggaaacg
     1981 agtgggtgtt gaatggcgag aagatgtgga tcagtctggc ggacgtcgcc gacaacttcc
     2041 tcttcttctg ctggactgat gaggagaagc ggcgcaagcg cgatcacacc ggcatgtcgt
     2101 gttttatcgt tgagcgcagc atgaagggtt tttcttccgg gaccattcac gggaagctcg
     2161 gcatacgcgc cggcaacacc ggttatttct cgttg
//
LOCUS       DASWTX010001218         1549 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_144835, whole genome shotgun sequence.
ACCESSION   DASWTX010001218 DASWTX010000000
VERSION     DASWTX010001218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144835"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..875)
                     /locus_tag="VGD38_18530"
     CDS             complement(<1..875)
                     /locus_tag="VGD38_18530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730090.1"
                     /translation="MAKVWGAVKFFHPYLAYREIDWDKALIETLPRVNSARSVEEYQA
                     AVNQMFAVLNDKSTRAEIELSESEAEKKVYPQAQTAAADEKLVRTENGIVIINAAKIA
                     AAVGKDNSTLSGFVTSVTQALPNATGIVIDARSQTEFVELDLYYFGVFLRQALTAMLD
                     TRVVLGSARYRMHNGYATQTGSGASFYSSSLLTAAPEVIQGQSKTKTPPMAVIINEHS
                     PSFAETLSGLQHAVRAFVIQDGERAPDSGGGSFTIKLPDNVKVRIRTSELINPDGSVD
                     LQPDTVVASNTDNAAL"
     gene            1123..>1549
                     /locus_tag="VGD38_18535"
     CDS             1123..>1549
                     /locus_tag="VGD38_18535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730091.1"
                     /translation="MTVLIAKLKTFAHSVLTPRRHMQSTFAPFYAENRWGDAESVSGP
                     GSNLERTAKLRSELPLLLEEIGARTLLDAPCGDFNWMKNTALKLEQYIGADVVPELIA
                     RNQSLYGDEHTRFVFLDLTRDKLPRADVILCRDCLIHFSN"
BASE COUNT          305 a          454 c          438 g          352 t
ORIGIN      
        1 agagccgcgt tatcggtgtt gctcgcgaca acggtgtcgg gttgaagatc gaccgaaccg
       61 tcggggttga tcagttctga agtgcggatg cgcactttta cgttgtcagg cagtttgatc
      121 gtgaacgaac cgccgcccga atccggtgca cgttcgccgt cctggatgac gaaagcgcga
      181 acggcatgtt gtagaccgct gagcgtttcg gcgaatgacg gcgagtgttc gttgatgatg
      241 acggccatcg gcggcgtctt tgttttcgac tggccttgaa ttacttcggg cgcagcggtc
      301 aagagcgatg acgagtagaa gctcgcgcca cttccggtct gagtcgcgta accgttgtgc
      361 atccggtaac gcgccgagcc cagcacgacg cgcgtatcca gcattgcagt tagtgcctgc
      421 cgcaggaaaa caccgaagta atacagatcg agctcgacga attccgtctg gctgcgcgcg
      481 tcgatcacga ttcccgtcgc gtttggtagc gcttgcgtga cgctcgtgac aaagccgctt
      541 agcgtactgt tgtctttgcc aactgctgcg gcgatcttcg cggcgttgat aatgacgatt
      601 ccgttctcgg tgcgcaccag tttttcgtca gcggcggctg tttgagcctg cgggtaaact
      661 tttttctcgg cttcgctttc ggaaagctca atttcggcgc gggtgctctt gtcgttcagc
      721 accgcaaaca tctggtttac cgccgcctga tactcctcaa cgcttctggc gctattcact
      781 ctcggaagtg tttcaatcag agccttgtcc cagtcgatct cgcggtaagc gagataagga
      841 tgaaagaact tcactgctcc ccaaaccttc gccaaacctg ccagccttgc gacccgtgtc
      901 tcttcccccg aaggcgcggg ctttgcgacc ggctgagatg tttgggtttg tgcctgtgag
      961 gcctgaaaaa ggaccaggca agagaggaaa agcgccagaa gtctttgagt tttcatctac
     1021 gcacctcggt ttgaaagcgg ttgtgagtaa cggcgcaggc gtccggcgcc ccttacccaa
     1081 ttaataagtg gcataatctc cggccgtatt accatcgaca gtatgactgt gctgatagcc
     1141 aagctcaaaa catttgcgca cagcgtgctg acgccgcgca ggcacatgca gtcgaccttt
     1201 gcgccgttct acgccgagaa ccgctggggc gatgctgaat ccgtctccgg ccccggctcg
     1261 aacctcgaac gtacggcgaa actccgcagt gagttgccgc ttctgctcga ggaaatcggc
     1321 gcgcgaacac tgctcgacgc gccgtgcggc gacttcaact ggatgaagaa caccgcgctc
     1381 aaactcgagc aatacatcgg cgcggacgtc gttcctgagc tcatcgcgcg caatcaaagc
     1441 ctctacggtg acgagcacac gcgtttcgtg tttctcgact taacccgcga caagctgccg
     1501 cgcgccgacg tcattctctg ccgcgactgc ctcattcact tctcgaacc
//
LOCUS       DASWTX010001219         2180 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_235567, whole genome shotgun sequence.
ACCESSION   DASWTX010001219 DASWTX010000000
VERSION     DASWTX010001219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2180
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235567"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1546)
                     /locus_tag="VGD38_18540"
     CDS             complement(<1..1546)
                     /locus_tag="VGD38_18540"
                     /inference="COORDINATES: protein motif:HMM:NF039502.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5691 domain-containing protein"
                     /protein_id="HEY0730092.1"
                     /translation="MQTWDDILATAVVGTDQREVKLAAREDDLARLLAQVDHKDREGF
                     LMTAASVASLYRTAGMAPPADTQPADEACARDEMSRVSARAGQHLWAMLNGEFRELLP
                     EWLTAMEKAGKRVPEEYLPALLLYAANEFSLHSLIPDVLGQRGQWLAAQRPDWHYAIR
                     KDDKEVWETGSREQRLALLENLRNVDPVKARELLATTWSQESAKDRVAFLEKLSTGVS
                     SADEEFLNEALQDRSVEVRRAARALLARLPNSNFSRRLQQLANQILSFKKPLIGKARI
                     EVAMPEDPIAWLKENGIEIDNPPRNATQSVGPKAWSLKELISLMPITHWNEHWQKPAI
                     EIIRAGEESEWRESFMLGFLNAVHRDRDPDWLEALVRFTSADQEQPQLIELAAYLPPA
                     RLEALILHAFKSESGELFDGHPAFRLLKVNRNEWSDQLSRAVITSVKKRINQGKDNNL
                     DWQTKATLKQFARYISPALYDELASGWPTESESWPGWAKGVDAFQSLLAFRRDMHQAI
                     SEKEEQL"
     gene            complement(1549..>2180)
                     /locus_tag="VGD38_18545"
     CDS             complement(1549..>2180)
                     /locus_tag="VGD38_18545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730093.1"
                     /translation="PATQADVRTAIGWTIKEDELPAENLVKDEWLVLGQRTTGEEGLR
                     VRRTWLWGQRSAKGALVLEFAAAGQHLALDLLPGTRVEAELVFYPSNYPLRAVLKTKL
                     NTTRSLKELPGYPANNELLTAYAGVLALNPWVEAIPAPLQTVVPVHRSGKWFARDNNG
                     RLLSMKCGMTVGWSLIALSGGLPITIFGEWNGRHLLPISAYADGRHVHL"
BASE COUNT          428 a          644 c          604 g          504 t
ORIGIN      
        1 atagttgttc ttccttttca gagattgcct gatgcatgtc gcggcgaaag gcgagcagcg
       61 actgaaaggc gtcgacgcct ttggcccagc ccggccacga ttcggattcg gtgggccaac
      121 cggatgccag ctcatcgtac aaagcaggtg aaatgtagcg tgcaaactgt ttcagagtgg
      181 ctttcgtttg ccagtcgaga ttgttgtctt tgccctggtt gatgcgtttc ttgacgctcg
      241 tgataacggc gcggctcaac tgatcgctcc actcgttgcg attgaccttc aacaaccgga
      301 aagccggatg accgtcgaag agctcacccg attcagactt gaacgcgtgc aggattaaag
      361 cctcgaggcg agctggtggg agataagcag cgagttcgat caactgcggc tgttcctgat
      421 cggcagaggt gaatctaacc agcgcctcca gccagtcagg atcgcgatct cgatgcacgg
      481 cgttcaggaa tcccaacata aacgactcgc gccactcact ctcctcgccc gcgcggatga
      541 tctcgatcgc gggtttctgc cagtgttcgt tccagtgcgt gatgggcatc agcgagataa
      601 gctcttttaa cgaccacgct tttggtccga ctgattgagt cgcgtttcgc ggtgggttat
      661 cgatctcgat cccgttttct ttgagccacg cgatcggatc ttccggcata gcgacttcga
      721 tccgtgcttt gccgatgagt ggctttttga aactcaggat ttgatttgcg agttgctgca
      781 aacgtcgcga gaagttcgag tttggcaaac gtgcgagtaa tgcgcgcgcg gcacgccgca
      841 cttccacgct tcgatcctga agcgcttcgt tgagaaactc ttcatccgcg gagctcacac
      901 cggtgctgag cttttcgaga aaagcaacgc ggtcttttgc cgattcctgc gaccacgttg
      961 tcgcaagtag ctcgcgcgct ttaactggat cgacgttccg tagattctcg agcaacgcca
     1021 atcgctgttc acggctaccc gtttcccaaa cttccttatc gtctttgcga atcgcatagt
     1081 gccaatcggg tctctgtgcg gccagccatt ggccgcgttg gcccaggaca tccggaatca
     1141 ggctgtgcag cgaaaactcg ttggctgcgt agagcagcag cgcaggcaaa tactcttcgg
     1201 gaacacgctt gcccgctttt tccatcgccg tcagccattc cggcaatagt tcacgaaact
     1261 cgccattgag cattgcccac aggtgttgac ctgctctcgc actgacccgg ctcatttcat
     1321 ctcgagcgca agcttcgtcc gcaggctgcg tgtcagccgg cggcgccatg cccgcggtgc
     1381 gatagagcga ggccaccgaa gccgcggtca tcaagaaacc ttcccggtcc ttgtggtcca
     1441 cttgagcaag caagcgcgct agatcatcct cgcgcgcggc gagtttgact tcgcgctggt
     1501 cagtaccgac aaccgcagtc gccagaatgt cgtcccacgt ttgcatgttt agaggtggac
     1561 atgtcgcccg tcagcgtaag cactgatggg taagaggtgc cgtccgttcc actcgccgaa
     1621 aatcgtgatc ggcaaaccgc cgctaagggc aattagcgac cagccgaccg tcattccaca
     1681 cttcatcgat aagagccggc cattgttgtc tcgcgcaaac catttgccac tgcgatgcac
     1741 tggaacaact gtttgcagcg gtgccggaat cgcttcgacc cacggattga gcgctagcac
     1801 gccggcgtat gccgtcaaca actcattgtt cgccggataa ccgggcagct ctttcaacga
     1861 tcgcgtcgtg ttgagtttcg tcttgagaac agcgcgcaag ggataattgc tcggataaaa
     1921 gaccagctct gcttcgactc gcgttcccgg tagcaggtcc aacgcgaggt gttgaccggc
     1981 cgcggcaaac tccaaaacca gcgcgccctt cgcgctgcgt tgtccccaaa gccaggtgcg
     2041 gcgcacgcgt agtccttcct cgcccgtcgt tcgttggccc aacacgagcc attcgtcctt
     2101 gaccaggttt tcggcgggca gttcgtcttc ttttatggtc caaccgattg cggtgcgaac
     2161 gtctgcctga gttgccgggg
//
LOCUS       DASWTX010001220         1576 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_127283, whole genome shotgun sequence.
ACCESSION   DASWTX010001220 DASWTX010000000
VERSION     DASWTX010001220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1576
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127283"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1576)
                     /locus_tag="VGD38_18550"
     CDS             complement(<1..>1576)
                     /locus_tag="VGD38_18550"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY0730094.1"
                     /translation="AINYRPEDRGVFISQACSGDDALRSEVESLLASHERSGEFIDEP
                     AFAHAAALLGNDNSELQPGASIGTYEVLSFISRGGMGEVYLAEDKRLGRKVALKLLPS
                     SFTKDDDRLRRFEQEARAASALNHPNIITIYEIRETETSHIIATEFVEGETLRSRVNR
                     APLNITEALDIAIQIADALAAAHKAGIIHRDIKPENIMLRPDGYVKVLDFGLAKLSEQ
                     ASPTVAAEAPTIQVRTGSGIVIGTAGYMSPEQARGLGVDNRSDIFSLGAVIYEMLARR
                     KPFEGDTPSDTLAAILRTEPPPLSRVLPGVPSELTRIVTKCLKKDREERYQVVKDLWL
                     DLKALKQELDFQRSRGGEAGAGEATAIFSEPRTTVERSAAGTITESLSIEIKRHKVGA
                     AVAVVLIALVLAASGFGIYKLLSRETTVAHFSEINLARLTNSGNAIDATISPDGKYIV
                     YVLSDRSSQSLWIRQVSTANDKLVVPAAPVGYFGVTFSPDGNDLYYVIKANLDQGTLY
                     RIPVLGGTPVKLSERLD"
BASE COUNT          292 a          445 c          488 g          351 t
ORIGIN      
        1 catcgagccg ttcgctgagc ttgacgggag tgccgccgag caccggaatg cgatacaacg
       61 ttccctggtc gaggtttgct ttgatgacgt agtaaagatc gttcccgtcg ggcgaaaacg
      121 tgacgccgaa atatccgacc ggagcagcgg gaacgaccag cttgtcgttt gctgtgctga
      181 cctggcgaat ccacaaactc tgactgctgc gatcgctcaa cacgtaaacg atgtatttcc
      241 catccggcga gatcgtggcg tcgatggcgt tgccggagtt agtgagccgc gcgagattga
      301 tctcggaaaa atgcgcgacc gtcgtttcgc gactcagtaa tttgtaaata ccgaaaccgc
      361 tcgcggcgag aacgagtgcg atcagcacga ctgcgacagc agcgccgact ttgtggcgtt
      421 tgatctcgat gctgagcgat tcggtaatcg tgccggcggc gctgcgttcg actgtcgtgc
      481 gcggctctga aaagattgcc gtcgcttcac ccgcgcctgc ctcgcctccg cgacttcttt
      541 gaaaatccag ttcctgtttc agcgctttca gatcgagcca cagatcttta acgacctggt
      601 agcgctcttc gcgatccttc ttcaaacatt tcgtgacgat gcgcgtcagc tcggaaggaa
      661 cgccgggcag cacgcgcgaa agtggcggcg gctcggttct gagaatcgca gcgagcgtgt
      721 cgctcggcgt gtcgccttcg aaaggtttgc ggcgcgcgag catctcgtaa atgaccgcgc
      781 ccagactgaa gatgtcggaa cgattatcga cgccgagccc gcgtgcttgt tcgggcgaca
      841 tgtaaccggc cgtgccgatc acgatcccgg aaccggttcg gacttgaatc gtcggcgctt
      901 cagcagcgac ggtgggcgat gcttgttcgc tcagttttgc gagaccgaag tcgagcactt
      961 tcacgtaccc gtcgggccgc agcatgatgt tttcgggttt gatgtcgcgg tgaatgattc
     1021 ccgctttgtg cgcggcggcg agtgcgtcgg cgatctggat cgcgatgtcg agggcttcgg
     1081 ttatgttcag cggcgcgcgg tttacacggc tgcgcagtgt ttcgccttcg acaaactcgg
     1141 tcgcgatgat gtgcgacgtt tcggtctcgc gaatttcgta gatcgtgatg atgttcggat
     1201 ggttaagcgc ggatgcggcg cgtgcttcct gttcgaagcg gcgcaggcga tcgtcgtctt
     1261 tcgtgaatga cgacggcagc agtttcagcg ccactttgcg cccgagccgt ttgtcttcgg
     1321 cgagataaac ttcacccatg ccgccgcggc tgatgaacga gagcacctcg taagtgccaa
     1381 tcgaagcgcc gggctgcaac tccgaattat cgttgccgag caacgctgcc gcatgcgcga
     1441 acgccggctc gtcgatgaac tcgccgctcc gttcgtgtga agcgagtaag gattcgactt
     1501 cgctgcgcag cgcgtcgtcg ccggagcacg cctgcgaaat gaacacaccg cgatcttcgg
     1561 ggcgataatt gattgc
//
LOCUS       DASWTX010001221         1761 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_82044, whole genome shotgun sequence.
ACCESSION   DASWTX010001221 DASWTX010000000
VERSION     DASWTX010001221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1761
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82044"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..409
                     /locus_tag="VGD38_18555"
     CDS             <1..409
                     /locus_tag="VGD38_18555"
                     /inference="COORDINATES: protein motif:HMM:NF013247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HEY0730095.1"
                     /translation="IKSLNYLNNVLAWEEAQSRDFDEAVVLNERGEIASATTSNLFWV
                     KNGTIHTPTLSTGAIAGVTRECVIDIAGKHFLPLLEGVYEMGDLTDADEIFLTSSGLG
                     VAPVTTFDFRRYGIEPGSVTAVISQAFAKLTRG"
     gene            528..>1761
                     /locus_tag="VGD38_18560"
     CDS             528..>1761
                     /locus_tag="VGD38_18560"
                     /inference="COORDINATES: protein motif:HMM:NF013491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP/pyruvate-binding domain-containing protein"
                     /protein_id="HEY0730096.1"
                     /translation="MSTVTEEASETTEQKTNKWVYLFDDGPGDDKSLLGGKGAGLCEM
                     TQAGLPVPPGLVVTTEACNAFFENDKNFPEGLWEQVQEGLKKIEEKVGKRFGDPKNPL
                     LVSVRSGAAFSMPGMMDTVLNLGLNEETVQGLAEQTGDLRFALDAYRRFASLFGEIVM
                     GVAHEKFERVLDRFKAQTQGGKDTDLNPDHLREIIAAEKQIILTEQHAIPEDPYEQLR
                     IAIAAVFNSWMGRRAIDYRRVNRIPDSLGTAVNVQAMVFGNMGAGSGTGVAFTRNPST
                     GKKELYGEYLLNAQGEDVVAGIRTPNPIIQLKKELPEVYEQFSDITTLLEQHYHDMQD
                     CEFTIERGKLWMLQTRTGKRSGAAAVRIAVEMVYEKLIDKATAVQRVTPEQLDQLLHP
                     TVDPKTNATVLATGLPASP"
BASE COUNT          415 a          502 c          514 g          330 t
ORIGIN      
        1 aatcaaaagc ctgaactatc tgaacaacgt gctcgcgtgg gaagaagcgc agagccgcga
       61 cttcgacgaa gccgttgtcc tgaacgagcg cggcgagatc gcgtcggcga caacgtcgaa
      121 cctgttttgg gtgaagaacg ggaccattca cacgccgacg ttgagcactg gcgcgatcgc
      181 gggcgtcaca cgcgagtgtg tgatcgacat cgcaggcaaa cattttcttc cgctgctcga
      241 aggcgtttac gagatgggag atctcaccga cgccgacgaa atctttctaa cctcctcggg
      301 tctcggcgtc gcgccggtca ccactttcga cttccgccgt tacggcatcg agcccggcag
      361 cgtcaccgcc gtcatctcgc aggctttcgc aaagttaacg cggggctgaa atctgtgtaa
      421 tctgtggttg aggttgacag ggttttgctg tttacaggac actggcactt tgcgcacgcg
      481 tgggatcatt tcaagccata aaacctaaga agagagtcaa ttccgcaatg agcactgtta
      541 ctgaagaagc ctcggagaca actgaacaaa agacaaacaa atgggtctac ctctttgacg
      601 acgggcccgg cgacgacaaa tcgctgctag gcggcaaagg cgcgggtctt tgcgagatga
      661 cccaggcggg cttgcccgtg ccgccgggtt tggtcgtgac caccgaagcc tgcaacgcgt
      721 tcttcgagaa cgacaaaaac tttcccgagg gcctttggga acaggtgcag gaaggcttga
      781 agaagatcga ggaaaaggtc ggcaagcgct tcggcgatcc aaagaatcct ttgctcgtgt
      841 ccgtgagatc cggcgcggct ttctcgatgc cgggcatgat ggacacggtg ctcaatctcg
      901 gcttgaatga agagacagtg caaggtctcg ccgagcagac gggcgatctt cgtttcgcgc
      961 tcgacgctta tcggcgcttc gcttcgttgt ttggcgagat cgtgatgggc gtggcccacg
     1021 agaagtttga acgcgtgctc gatcgcttca aagcgcagac gcagggcgga aaagataccg
     1081 atctcaatcc cgatcacctg cgcgagatca tcgccgcgga gaaacagatc atcctcacgg
     1141 aacagcacgc gattcccgaa gatccttacg aacaactgcg catcgcgatc gccgccgtgt
     1201 tcaactcgtg gatgggccgg cgcgcgatcg attaccggcg cgtcaaccgc atacccgatt
     1261 cgctgggcac agcggtcaac gtgcaggcga tggtgtttgg aaacatgggc gcgggtagcg
     1321 gaaccggtgt ggcgttcacg cgcaatcctt caaccggcaa aaaggaactc tacggcgagt
     1381 atcttttgaa cgcgcagggc gaagacgtcg tcgccggcat acgcacgcca aacccgatta
     1441 ttcaactcaa gaaagaactg cccgaggtct acgaacagtt ctccgatatc acgaccctgc
     1501 tcgaacagca ctaccacgac atgcaggact gcgagttcac gatcgaacgc ggcaagctct
     1561 ggatgttgca aacacgcacc ggcaaacgca gtggcgccgc tgccgtgcgt atcgcagtcg
     1621 agatggttta cgaaaaactg atcgacaagg cgactgccgt acaacgcgtc acgcccgagc
     1681 aactcgatca actgctgcac ccgacagtcg atccaaagac aaatgcaaca gtgctcgcga
     1741 cgggtctgcc cgcgagtccg g
//
LOCUS       DASWTX010001222         2046 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_209949, whole genome shotgun sequence.
ACCESSION   DASWTX010001222 DASWTX010000000
VERSION     DASWTX010001222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209949"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2035
                     /gene="ppdK"
                     /locus_tag="VGD38_18565"
     CDS             <1..2035
                     /gene="ppdK"
                     /locus_tag="VGD38_18565"
                     /EC_number="2.7.9.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050242 - pyruvate, phosphate dikinase
                     activity [Evidence IEA];
                     GO_process: GO:0015976 - carbon utilization [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pyruvate, phosphate dikinase"
                     /protein_id="HEY0730097.1"
                     /translation="GRRAIDYRRVNRIPDSLGTAVNVQAMVFGNMGAGSGTGVAFTRN
                     PSTGKKELYGEYLLNAQGEDVVAGIRTPNPISQLKKELPEVYEQFASITGLLEKHYKD
                     MQDCEFTIERGKLWMLQTRTGKRSGAAAVRVAVEMVYEKLIDKATAVQRVSPQQLDQL
                     LHPTVDPKTNATVLATGLPASPGAAQGQVVFSPDEAEEMAREGAHVVLVRMETSPDDF
                     HGMVAAQAIVTARGGMTSHAAVVARGMGKTCVSGAQAINIDYSQQQFTVDSTVVTKGD
                     WITVDGSTGRVFLGQVPTIQPTLDNDFYKLMSWADKFRKLRVRANADTPLDAKTARQF
                     GAEGIGLCRTEHMFFGDKRLAAMREMILSDGVGAREKALDKLLPLQRGDFIGIFREMV
                     GLPVTIRLLDPPLHEFLPNAEELSNELAELKMKLKGAASLTEMDHVLDEIDHKRALLR
                     QVNRIREANPMLGFRGCRLGLLFPEVTRMQCRAIFEAACKVQGERHKVELEIMVPLVS
                     VSEELRQQRELIDEVARQVMGEHGMTIEYLVGTMIELPRAALMADRIAAHAQFFSFGT
                     NDLTQTTFGLSRDDSSRFLPNYIERKIMRDDPFQVLDRDGVGQLVQLGTERGRTAKPG
                     LKVGICGEHGGDPQSIAFCNEIGLDYVSCSPFRVPVARLAAAQAALTPVEADV"
BASE COUNT          426 a          587 c          652 g          381 t
ORIGIN      
        1 gggccgtcgc gcgatcgact atcgtcgtgt gaatcgtatt ccggattcgc tcggcacggc
       61 ggtgaacgtg caggcaatgg tgtttggcaa catgggcgcg ggcagcggca ccggcgtcgc
      121 cttcacacgc aatccatcaa ctggcaaaaa agaactctac ggcgaatatc tactcaacgc
      181 gcagggcgaa gacgtcgtcg cgggcattcg cacgccaaat ccgatcagcc aactcaaaaa
      241 agaactgccg gaagtttacg aacagtttgc ctccatcacg ggcctgctcg agaagcacta
      301 caaagacatg caggactgcg agttcacgat cgagcgcggc aaactctgga tgctgcaaac
      361 gcgtaccggc aaacgcagcg gcgccgcagc cgtgcgcgtc gcggtcgaaa tggtttacga
      421 gaaactgatc gacaaagcga cggccgtgca acgcgtctcg ccgcaacagc tcgatcaact
      481 cctgcacccg actgtcgatc cgaaaaccaa tgctaccgtg ctcgcgactg gtctgccggc
      541 gagcccgggc gcggcgcagg gccaggtcgt gttcagtccc gacgaagccg aagagatggc
      601 tcgcgaaggc gcgcatgtgg tgctcgtgcg aatggaaacg agcccggacg attttcacgg
      661 gatggttgcc gcgcaggcga tcgttacggc gcgcggcggc atgactagtc acgccgcggt
      721 cgtcgcgcgt ggcatgggca agacgtgcgt cagcggcgcg caggcgatca acatcgacta
      781 cagccagcag cagttcacgg ttgacagcac ggtcgttaca aaaggcgact ggatcacggt
      841 tgacggttcg acaggccgcg tgttcctggg ccaggtaccg acgattcaac ccacgctcga
      901 taacgatttt tacaagttga tgtcgtgggc ggataagttt cgcaagctcc gcgtgcgagc
      961 caacgccgac acgccgctcg acgcgaagac cgcgcggcag tttggcgctg aaggcatcgg
     1021 tctctgccgc accgagcaca tgtttttcgg ggacaagcgg ctcgcggcaa tgcgcgagat
     1081 gatcctgtcc gacggcgtgg gcgctcgcga aaaggcgctc gacaaattgt tgccgctgca
     1141 acgtggtgac ttcatcggca tctttcgcga gatggtcggc ttgccagtaa cgatccgctt
     1201 gctcgatccg ccgctccacg aatttttgcc aaacgccgaa gagttgagca acgaactggc
     1261 agagttgaaa atgaaactga agggagcggc ctcgttaacc gagatggacc acgtgctcga
     1321 cgagatcgat cacaagcgcg cgctgctccg gcaagtgaat cgcattcgcg aagccaatcc
     1381 gatgctcggt tttcgcggtt gccgtctcgg gcttttgttt cccgaggtga cgcgcatgca
     1441 atgccgcgcg attttcgaag ctgcgtgcaa agtgcagggc gagcgccaca aggtcgagct
     1501 cgagatcatg gtgccgctcg tttcggtgag cgaggagttg cggcagcaga gagagttgat
     1561 cgacgaagtc gcacgccagg taatgggcga gcacggcatg acgatcgaat atcttgtggg
     1621 aacgatgatc gagttgccgc gcgcggcgtt gatggcggat cggattgctg ctcacgcgca
     1681 gttcttctcg ttcggcacga acgatctcac gcagaccacg tttggcttga gccgtgacga
     1741 ctccagccgc tttctgccga attacatcga gcgcaagatc atgcgcgatg atccgtttca
     1801 ggtgctcgat cgcgacggcg tgggccagtt ggtccaactc ggcaccgaac gcggccgcac
     1861 tgcgaagccg ggtttgaaag tcggaatttg cggcgagcac ggcggcgatc cgcagtcgat
     1921 cgcgttctgc aacgagatcg ggctcgacta cgtgagttgt tcaccgttcc gggttccggt
     1981 tgcacgtttg gccgcggcgc aagctgcgct gactccggtg gaagccgacg tgtgagttcc
     2041 taaatg
//
LOCUS       DASWTX010001223         1560 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_39186, whole genome shotgun sequence.
ACCESSION   DASWTX010001223 DASWTX010000000
VERSION     DASWTX010001223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1560)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1560)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1560
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39186"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..372
                     /locus_tag="VGD38_18570"
     CDS             <1..372
                     /locus_tag="VGD38_18570"
                     /inference="COORDINATES: protein motif:HMM:NF014047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HEY0730098.1"
                     /translation="LVEQCEYDSIYIFKYSKRAGTPAANFTDDVPEKEKTARFQALEE
                     VQRKNQERIYRSYVGRTLQVLVEKQSTRSESDLSGHSTCNKVVNFAGDRSLEGELVEV
                     LVTAAKTNSLYGTFVNRSAVE"
     gene            387..878
                     /locus_tag="VGD38_18575"
     CDS             387..878
                     /locus_tag="VGD38_18575"
                     /inference="COORDINATES: protein motif:HMM:NF014618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nuclease family protein"
                     /protein_id="HEY0730099.1"
                     /translation="MEIEVKIRALMMDPNSGTPIIILKDVQSDTMLPIWVGAYEANAI
                     ALEIEKIAPPRPMTHDLLRNLIVELGVRVERVVVTSLRDNTFFAVIEMRNSEGDRMTL
                     DSRPSDAIALALRADCPIYVDMEVIKASRNTLPAEESEESEMSANEEEGPDVIGEAGD
                     LPM"
     gene            920..>1560
                     /locus_tag="VGD38_18580"
     CDS             920..>1560
                     /locus_tag="VGD38_18580"
                     /inference="COORDINATES: protein motif:HMM:NF013793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY0730100.1"
                     /translation="MVIAIANQKGGVGKTTTAINLAAAFARKGKRVLLLDLDPQANSS
                     ISFLDPLTVERSVYELMMDGDAPIEQTVYATPVENLSVVPARINLAKLEAKLVGDFDA
                     PFRLKDRLEPFRAHYDVIVIDTPPTLGLITVNALVAASHVLIPIQSSYFALEGTDDLL
                     ETIEKVKARPNPNLELLGVLVTLHDKRTTLAREVHEQIKKVFGTKLFDTVITK"
BASE COUNT          382 a          409 c          451 g          318 t
ORIGIN      
        1 ctcgtcgaac agtgtgagta cgacagcatt tacatcttca agtactcgaa acgcgccgga
       61 acaccggcgg caaacttcac tgacgacgtg cctgagaaag aaaaaaccgc gcgattccag
      121 gcgctcgaag aagtgcaacg caagaaccag gaacgaatct atcgatctta tgtaggccga
      181 actttgcagg tgctggtcga gaaacaaagc acccgatccg aaagcgatct ctcggggcat
      241 tctacgtgca acaaggtcgt caactttgcc ggcgatcgca gcctcgaagg cgaattagtc
      301 gaagtgttgg tgactgccgc taagacaaac agcttatatg gaacgtttgt aaatcgttca
      361 gcggttgagt aaggggtacc cggtttatgg aaattgaggt aaagatccga gcactaatga
      421 tggatccgaa cagcggaact ccgatcatca ttctgaaaga cgttcagagt gatacgatgc
      481 tcccgatttg ggtcggtgcc tacgaggcga acgccatcgc tttggagatt gagaagatcg
      541 cgccgccgcg tccgatgacg cacgacctgt tgcgcaacct gatcgtcgag ctgggcgtgc
      601 gcgtcgaaag agtcgtggtg acgagcctgc gtgataacac gtttttcgca gtgatcgaaa
      661 tgcgcaacag tgaaggcgac cgcatgacgc tcgattcgcg tccgtccgac gcgatcgcgc
      721 tggcgctgcg tgcggattgt ccaatctacg tcgacatgga agtgatcaaa gcttcgcgca
      781 acaccttgcc tgccgaggaa agcgaagaga gtgaaatgtc cgccaatgaa gaggaagggc
      841 ccgacgtcat cggcgaagcc ggcgacctgc cgatgtgacg aagtatgaaa ccctggagcc
      901 ctttggcact gtgcagcgaa tggtaattgc catcgccaat caaaaaggtg gggtggggaa
      961 gaccactacc gctatcaatc tcgccgccgc tttcgcccgc aaagggaaac gtgtcctgct
     1021 tctcgatctc gatccccagg caaacagttc gatctcgttt ctcgacccgt tgacggttga
     1081 gagatctgtt tacgaactga tgatggacgg cgacgcgccg atcgagcaga cggtttatgc
     1141 aacgcccgtc gagaacctgt cggtcgttcc cgcgcgaatc aacctggcga agttggaagc
     1201 gaaactcgtt ggcgacttcg acgcgccgtt tcgtttgaaa gatcggctcg aaccgtttcg
     1261 agcgcactac gacgtgatcg tgatcgacac gccgccgacg ttgggcctga tcacggttaa
     1321 cgcactcgtg gccgcatcgc acgtgttgat tccgattcaa tcgtcgtact tcgcgctcga
     1381 aggcacggac gatctgctcg aaacgatcga gaaggtcaaa gcgcgtccga atccgaatct
     1441 cgagctgctt ggtgtgctcg taactttgca tgacaagcgc accacacttg cgcgcgaggt
     1501 gcacgagcag attaagaagg tgtttggaac gaagttgttt gacacagtga tcacgaagag
//
LOCUS       DASWTX010001224         1520 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_427274, whole genome shotgun sequence.
ACCESSION   DASWTX010001224 DASWTX010000000
VERSION     DASWTX010001224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427274"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..898
                     /gene="mraY"
                     /locus_tag="VGD38_18585"
     CDS             <1..898
                     /gene="mraY"
                     /locus_tag="VGD38_18585"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEY0730101.1"
                     /translation="TMGGVLIVGSVLISTLLWARLSSVYVWTAMIATLLFALIGFLDD
                     YSKMAKKQSLGLTGRQKLLGQLLVAVGVWAVLYLTGKYSWNVSIPFFKATSDPNGPAF
                     IGPYLYLILIGVVLLGSSNAVNLTDGLDGLAISVTFIAMSALTGFTYLASDKRWADYL
                     ELTHRPEAAELTVFCGAMAGASLGFLWYNAPPAQVFMGDVGSLAIGGAMGTVAVLTKQ
                     EFMLLMVGGVFVIEAVSVMLQVSVFKMTKRTTGTGRRLFKMTPLHHHFEMQDWKESKI
                     VFRFLILAILFALLSLSTLKLR"
     gene            898..>1520
                     /locus_tag="VGD38_18590"
     CDS             898..>1520
                     /locus_tag="VGD38_18590"
                     /inference="COORDINATES: protein motif:HMM:NF019850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HEY0730102.1"
                     /translation="METAGKKVLIIGAARSGIAAARFLADRGAIVALNDQKPIEKWSA
                     EALALKEAGVGLLPGEPPSWLLDQLDLVVVSPGVPATIIPIRYAERAGAEVIGEVELA
                     ARYLKGRIVAITGSNGKTTTTSLIGELLRDAGLPVQVGGNIGKALISMVESSRDDGWT
                     VVELSSFQLETIKTLRPSIAIVLNVTPNHMDRYETFNDYAAAKHRIF"
BASE COUNT          279 a          334 c          535 g          372 t
ORIGIN      
        1 gacgatgggc ggcgtgctga tcgtcggttc ggttttgatc tcgacgttgc tgtgggcgcg
       61 cttgtcgagt gtctatgttt ggaccgcgat gatcgcgacg ctgctcttcg cgttgatcgg
      121 ctttctggat gactactcga agatggctaa gaagcagagt ctcgggttga cgggacggca
      181 gaagctgctc gggcagttgc tggtggcggt gggtgtttgg gcggtgctct acttgacggg
      241 gaagtattcg tggaacgtga gcattccgtt tttcaaggcc acttccgatc cgaacgggcc
      301 ggcgtttatc ggtccgtatt tgtacctgat cctgatcggc gtggtgctgc ttggttcgtc
      361 gaatgcggtg aacctgacgg acggattgga tggattggcg attagcgtga cgttcatcgc
      421 gatgagcgcg ttgaccgggt ttacgtatct cgcgagtgac aagcgttggg ccgactacct
      481 ggagctgacg catcgacctg aagcggcgga gttgacggtg ttttgcggcg cgatggcggg
      541 agcgagtctc gggtttctct ggtacaacgc gccgcctgcg caggtcttta tgggagatgt
      601 ggggagcctc gctataggcg gggcgatggg aacggtggcc gtgctcacga aacaggagtt
      661 catgctgttg atggtgggcg gcgtgtttgt gatcgaagcg gtttcggtga tgttgcaggt
      721 gtcggtgttc aagatgacga agcgcacgac gggcaccggg cggcgtttgt tcaagatgac
      781 gccgttgcat caccactttg aaatgcagga ttggaaggag tcgaagatcg tcttccggtt
      841 tttgatcctc gcgattctgt ttgcgttgtt gagtttgtcg acattgaagt tgcggtagtg
      901 gaaacagcgg gcaagaaagt tttgataatc ggggcagcgc gcagcgggat tgcggcggcg
      961 aggtttcttg cggaccgggg cgcgattgtg gcgctcaacg atcagaagcc gatcgagaag
     1021 tggtccgcgg aagcgctcgc gttgaaagaa gcaggtgttg ggctactgcc aggcgagccg
     1081 ccgagctggt tgttggacca actcgatctg gtagttgtca gtcccggcgt tcccgcgaca
     1141 atcattccga ttcgctacgc ggagcgtgca ggagcggaag ttatcggcga agtagaactc
     1201 gccgctcgat atttgaaagg acgaatcgtt gcgatcacgg gcagcaacgg caagacgact
     1261 acgacctcgc tgattggtga gttgttacgt gatgcgggac tcccggtgca ggtcggtggg
     1321 aatatcggta aggcgttgat ctcgatggtt gagagctcgc gtgacgatgg ttggacagtg
     1381 gttgagttgt cgagtttcca gttggagacg atcaagacac tgcggccgtc gattgcgatt
     1441 gttttgaacg tcacgccgaa tcacatggat cgttacgaga cgtttaatga ctacgcggcg
     1501 gcgaagcatc gcatcttcat
//
LOCUS       DASWTX010001225         1808 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_188132, whole genome shotgun sequence.
ACCESSION   DASWTX010001225 DASWTX010000000
VERSION     DASWTX010001225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1808
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188132"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..352
                     /locus_tag="VGD38_18595"
     CDS             <1..352
                     /locus_tag="VGD38_18595"
                     /inference="COORDINATES: protein motif:HMM:NF017239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PqqD family protein"
                     /protein_id="HEY0730103.1"
                     /translation="PRDGRALGQQLLSITRTAPTGKSIIMNATTNLTIGKNVVVTDFD
                     GGEGILVDLNTKRYYQLNETAMLVWRGLEQGKSVNEIVDDVTASYEVEPEHATTSVQR
                     LLDSFQIYKLVSAK"
     gene            352..867
                     /locus_tag="VGD38_18600"
     CDS             352..867
                     /locus_tag="VGD38_18600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730104.1"
                     /translation="MTRLHLKYAILTAAIFLPLLWAFVAIRNLYPVAAWNVMMSGGML
                     ERGRSYWILRGETVSGETIDIRPMSLTNALYARTWTMVNATVDNQSFKLPNPYPANAE
                     LMRQAGGLEHLPPGARLPDLLRAWGDLYNERLPPESPQRLKAIRLDMYRWEGGSFDNY
                     DKFIETWRQEL"
     gene            849..1766
                     /locus_tag="VGD38_18605"
     CDS             849..1766
                     /locus_tag="VGD38_18605"
                     /inference="COORDINATES: protein motif:HMM:NF016946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008488 - gamma-glutamyl carboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0017187 - peptidyl-glutamic acid
                     carboxylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HTTM domain-containing protein"
                     /protein_id="HEY0730105.1"
                     /translation="MAPRVIEAVVNRIVPATPFALGVARVVVHATFLVSVTIASFSAL
                     GRLPITIMRPTGAMKLLPWSFYEQLLTPTGMTILKLAMVVSLLAGMLGFLTPISTKTS
                     FLLVLFYQGLLRSFGHFNHDEMLAVYCLAVLAFTPCGDEFSVDKRLRKTRKDRPAFAY
                     AYPILLMQLLMAWVYFSSALIKLRVAGWTYLGENNLPALAIYHSLDNLHDTSFRIAFW
                     LPQVKQYLPFFVGLVLLWELLFPLAVFFRRLRWLILIGGVIFHISTLFVMNIFFPHQL
                     ALYLLFVDWDRFTRSRSEFLPSSSRATVG"
BASE COUNT          374 a          538 c          463 g          433 t
ORIGIN      
        1 tccgcgagat ggccgagcgt tgggccaaca gctcttatca attactcgaa cagcaccgac
       61 agggaaatca atcatcatga acgccactac taatctaacc atcggcaaga acgtcgtcgt
      121 caccgatttt gacggcggcg aaggcatact ggtggacctt aataccaagc gttactacca
      181 gctcaacgaa accgcgatgc tcgtgtggcg cggcctcgag cagggcaaga gcgtcaacga
      241 gatcgtcgac gacgtcaccg ccagctacga agtggagcct gaacacgcaa ccaccagcgt
      301 ccaacgcctg ctcgacagtt ttcagattta caaactcgtc agcgcgaaat aatgactcgc
      361 ctgcacctca agtacgcaat tctcacagcc gcaatcttcc tgccattact atgggccttc
      421 gttgcaattc gaaatcttta tcccgttgcg gcgtggaacg tgatgatgtc cggcggcatg
      481 ctcgaacgcg gccgcagtta ttggatactg cgcggcgaga cggtgtccgg cgagacaatc
      541 gacattcgtc ccatgagtct cacgaatgcg ctctacgcgc gcacatggac catggtcaac
      601 gcgaccgtcg ataaccaaag cttcaaactt cccaaccctt atcccgcgaa cgcggagttg
      661 atgcgacaag caggcggtct cgaacatctg ccgccgggcg cgcgtcttcc cgatctgctg
      721 cgcgcgtggg gcgacctcta caacgaacgt ctgccgcccg aatcaccaca acggctgaaa
      781 gcgatccggc tcgacatgta tcgctgggaa ggcggcagct tcgacaacta cgacaagttc
      841 atcgaaacgt ggcgccaaga gttatagagg cagttgtaaa tcgcatcgtt cctgcgaccc
      901 cgttcgccct gggcgtcgcg cgcgtcgtgg ttcacgcgac gtttctggtt tcagtgacaa
      961 tcgcttcctt ctctgcgttg ggccggcttc cgatcacgat catgcgcccg accggcgcga
     1021 tgaaactcct gccgtggagc ttttacgagc aactgctgac gccaaccggc atgacgatcc
     1081 tgaagctcgc catggtcgtc tcgctgctgg ccggaatgct tgggtttctc acacccatct
     1141 cgaccaagac gtctttcctg ctggtgctgt tttatcaggg actcttgcgc agtttcggcc
     1201 acttcaatca cgacgaaatg ctcgccgttt actgtctcgc cgtgctggcg ttcacgccgt
     1261 gcggcgacga gttctctgtg gacaaacgcc tcagaaagac tcgaaaagac cgtccggcgt
     1321 ttgcttacgc ctatccgatc ctgctgatgc aattgctaat ggcgtgggtc tatttcagct
     1381 ccgcgctgat caagctgcga gtcgccggat ggacctatct cggcgaaaac aatctcccgg
     1441 cgctggcgat ctaccattcg ctcgacaatc ttcacgacac cagcttccgc atcgccttct
     1501 ggttgccgca agtgaagcaa tatctgccgt ttttcgtggg gctggtgttg ttgtgggagt
     1561 tactttttcc cctggccgtt ttctttcgcc ggcttcgttg gctgatcctg ataggcggtg
     1621 tgatatttca catttcgaca ctcttcgtca tgaacatctt tttccctcac cagcttgctt
     1681 tgtacctgtt atttgttgac tgggacaggt ttacccgttc acgttcagag tttttaccga
     1741 gcagttcacg tgcgacagtt ggataattcc gtcctgttaa atttcgttga ctgctttcaa
     1801 aaaagcat
//
LOCUS       DASWTX010001226         5068 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_188133, whole genome shotgun sequence.
ACCESSION   DASWTX010001226 DASWTX010000000
VERSION     DASWTX010001226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5068)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5068)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5068
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188133"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(102..968)
                     /gene="ligD"
                     /locus_tag="VGD38_18610"
     CDS             complement(102..968)
                     /gene="ligD"
                     /locus_tag="VGD38_18610"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF045432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HEY0730106.1"
                     /translation="MITHPEKVLFPDDGITKGELAAYYEAIAPVMLPHLRRRPITMER
                     FHRGIGAPGFFQKDVVKGFPDWLKRVEVPKHGGTVHHPIANDTRSLLWLANQNSITIH
                     VWPSRTPNLYNPDICIFDLDPAGDDEPDLLRAAALNLRDLLAELGLPSWIKTTGSKGF
                     HIAVPLDGKSDFGTVARFAHQVGRIAVERDPDHLTQEFMKVDRGGRILVDTGRNGYSA
                     TFAAAYTVRARPGAPVSAPCTWEEIERGEVHPKSFTLRTMAARIAAVGDLWSDLARRK
                     RSLKQALRRLDG"
     gene            complement(965..1792)
                     /locus_tag="VGD38_18615"
     CDS             complement(965..1792)
                     /locus_tag="VGD38_18615"
                     /inference="COORDINATES: protein motif:HMM:NF013252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730107.1"
                     /translation="MSRFPEWLVPMAATLTQERFTGGEWLFERKYDGIRLLAFKQGAD
                     VQLFSRNHLPQHVPAISEVIAQLPHQEIILDGEITWPGGTTMYHVFDIMWLDGRDLRK
                     LPLEERLAILRQLPLSGPLHRVEPVMDESPWERAEREGWEGVIAKRRDSEYEHRRSRN
                     WLKMKCELSHDFVVGGFTDPQGKRVGLGALLVGHYEGDDLVFAGKIGTGFDTKLLLDL
                     RARLDQLEIPKAPFTKAVGLPRVRAHWVRPEIVVKVGFIEWTNHGKLRHPRLLSVVE"
     gene            1886..2635
                     /locus_tag="VGD38_18620"
     CDS             1886..2635
                     /locus_tag="VGD38_18620"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY0730108.1"
                     /translation="MSTRLTRAFDEPRRFAPVKVSRDRVIREVVGLRPYRPSGFLVDA
                     ERFGSKLLVHNYGHGGGGVTLSWGTASLAVDLVRDSPAASRARRFAVLGCGVSGLSTA
                     RLLQRRYQNGPGTVTIYAKALPPDTTSNIAGASWAPTSVYEDDQVDATFNDQFRRACQ
                     ISNREFQLLVGPEYGVRWMDTFEFLRSEMSLDRELPGGNALYPAKQIHRDPQRYFGFP
                     FVRQYSTMLISRRSISARCCATFTSRAEELS"
     gene            2542..2949
                     /locus_tag="VGD38_18625"
                     /pseudo
     CDS             2542..2949
                     /locus_tag="VGD38_18625"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
     gene            complement(2946..4676)
                     /locus_tag="VGD38_18630"
     CDS             complement(2946..4676)
                     /locus_tag="VGD38_18630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730109.1"
                     /translation="MKKIFHFALATLAVVSIFVATKSTAQNRARFEVSFPASLDKGPI
                     DGRLLLLISTSNEGEPRFQINEDLNTQQVFGVDVDAWKAGESKTLDQSAFGYPRRSLA
                     DVPPGEYTVQALLHRYETFKRSDGHTVKLPMDRGEGQQWSRAPGNLYSTPKRMRIDGN
                     TPISITLDKVIPPIEPPKDTKYIKHIKIQSERLTKFWGRPMHLGAHVLLPEGFDSHPE
                     ARYPLVIFHGHFPADFGNFREQPPDPNLKPEYSARFKLEGYNRIVQEQAHQFYKDWTG
                     PNFPRFIIIEIQHANPYYDDSYAVNSANLGPYGDAITYELIPEIEKRFRGIGKGWARF
                     LYGGSTGGWEAMAAQVFYPDEFNGSWAACPDPIDFRAYTVVNIYEHENAYYADSKWKR
                     MPRPGKRNYLGELSATVEDMNHMELALGTNSRSGGQWDIWQAVYSPVGSDGYPKPIWD
                     KLTGKIDRSVAEYWRENYDLSYILKRDWAKLGPKLAGKINIYVGEADNYFLNNAVYLV
                     EDFAKTAKNPACGGEIDYEPRAEHCWNGDHTRPNAISRLRYHQFFAPKIVERITKSAP
                     PGADLKSWRY"
     gene            4710..>5068
                     /locus_tag="VGD38_18635"
     CDS             4710..>5068
                     /locus_tag="VGD38_18635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730110.1"
                     /translation="MKTQRLAIALTIINLALTVFLLAQLRRADAEELETSQQTAPAQQ
                     AASSQAVAPVLRGRALEIVDTQGRVRASISVQPAVTVDSKFYPETVLLRLTDPKNGPV
                     VKLQAAENGSALGMSDDA"
BASE COUNT          997 a         1486 c         1486 g         1099 t
ORIGIN      
        1 cgccggttga gtattcgctg acggattatg gacgttcggt gttgccgttg gttgagagtg
       61 ttcgcgtgtg gggccgtggg cacttagatc gctctagcag ttcatccgtc taatcgcctc
      121 aaagcttgtt tcaacgagcg ctttcttcgc gctaagtcgg accataaatc accgaccgcc
      181 gcaatacgag ccgccatcgt tcgcaacgtg aaactcttcg gatggacctc accacgctct
      241 atctcttccc acgtacacgg agcagacaca ggcgcgcccg gtctggcgcg caccgtgtaa
      301 gcggcagcga acgtcgcgct gtatccgttg cggccggtgt cgacgagaat gcgtccgccg
      361 cgatcgactt tcataaactc ctgcgtcaga tgatcgggat cgcgttcgac cgcgattctt
      421 cctacttgat gcgcaaagcg cgcgacagtg ccgaagtcag acttgccgtc gagcggcaca
      481 gcgatgtgaa agcccttcga acccgtggtc ttgatccagc tcggcaaacc gagttcggct
      541 aatagatcgc ggaggttcag cgctgcggcg cgcaaaagat cgggttcgtc atcaccggct
      601 ggatcgaggt cgaaaataca gatgtccggg ttataaaggt tcggcgtgcg cgacggccac
      661 acgtgaatcg tgatgctgtt ctggttcgct agccacagca gcgagcgtgt gtcattcgcg
      721 atcggatgat ggaccgtgcc gccgtgtttc ggaacttcaa cacgcttgag ccagtcggga
      781 aagcctttca ccacgtcctt ctgaaagaag cccggtgcgc cgatgccgcg gtgaaaacgt
      841 tccatcgtga tcgggcgccg ccgcaggtgc ggcaacatca cgggtgcgat cgcttcgtaa
      901 tacgcggcga gttcgccttt cgtgatcccg tcgtcgggaa agagcacctt ttcaggatgt
      961 gtgatcattc gacgacactt aatagacgtg ggtggcgcaa cttgccgtgg ttggtccact
     1021 cgatgaaacc gaccttcacc acgatctcgg gccgcaccca atgcgcgcgc acgcgcggca
     1081 agcccacggc ttttgtaaac ggcgcttttg ggatttccag ttggtccaat cgcgcgcgca
     1141 gatcgagcag cagtttggtg tcgaaacctg ttccgatctt tcccgcgaag accaaatcat
     1201 cgccttcgta atgcccgacg agaagcgcgc cgagaccgac gcgtttgcct tgtggatcgg
     1261 tgaacccgcc gacgacgaag tcgtgcgaca gttcacactt catcttcagc cagtttcgcg
     1321 aacgccggtg ttcgtactcg gaatcgcgtc gcttcgcgat cacaccttcc cagccttctc
     1381 gttcggcacg ttcccacggt gattcgtcca tcacaggctc gacgcgatgg aggggtccac
     1441 tcagcggcaa ctgtcgcaaa atcgcgaggc gttcttcgag tggcaacttg cgcaagtcgc
     1501 ggccgtcgag ccacatgatg tcgaagacgt gatacatggt cgttccgccc ggccacgtga
     1561 tctcgccgtc aagaatgatc tcctggtgcg gtagttgtgc tatcacctcg ctgatggccg
     1621 gcacgtgttg cggcagatga ttccgcgaaa acaactgaac gtcagcaccc tgtttgaagg
     1681 ccagcaagcg aatcccgtca tacttacgct cgaacaacca ttccccaccg gtgaaccgct
     1741 cttgcgtgag cgtcgcggcc atcggcacca gccattcagg aaaacgagac atgcgccaca
     1801 gattacgcta atcttcgcca cgatgagtac acagattagg cggcgcgatt ttttgacggg
     1861 cgcagcggcg atgaccacgc tgctgatgag cacgcgcctg acacgcgctt tcgacgagcc
     1921 gcggcggttt gcccccgtga aagtgtcgcg cgatcgcgtg attcgcgaag tggtcgggtt
     1981 gcggccgtac cgcccaagcg gcttcctggt cgatgccgag cggttcggca gcaagctgct
     2041 ggtccataac tacggtcatg gcggcggcgg tgtcacgctt tcgtggggca cggcgtcgct
     2101 cgcggtcgat ctcgtgcggg actctccggc cgcatcgcgc gcgcggcgtt ttgctgttct
     2161 tggttgcggc gtcagcggtc tctcgaccgc gcgtctgttg caacgccgtt atcagaacgg
     2221 tccgggaacg gtgacgatct atgcgaaggc gctaccgccc gacacgacgt caaacatcgc
     2281 cggtgcgtcg tgggcgccga cttccgttta cgaagacgac caggtcgacg cgacattcaa
     2341 cgatcagttt cgccgcgcgt gccaaatctc gaatcgcgag tttcaactgc tggttggacc
     2401 agaatacggc gtgcgctgga tggacacgtt tgagttcctg cgcagcgaga tgtcgctcga
     2461 ccgcgaactt cccggcggca acgcgctgta tcccgcgaaa cagattcatc gcgatccgca
     2521 gcgttacttc ggcttcccgt tcgtgcggca gtattcgacg atgctgatca gccgtcgatc
     2581 tatctcagcg cgttgttgcg cgacttttac atcgcgggcg gaagagttgt cgtgaaggag
     2641 tttcgcaacc ggcgcgagat cgcgcggttg cctgagcacg ttgtattcaa ctgcaccggt
     2701 ctcggttcgc gcgagttgtt tgccgatgaa gaactgattc cggtgcgtgg tcagctcgaa
     2761 gtgctgctgc cgcaacccga gatcgattac tgctatctca gcagcggcta catgttcccg
     2821 cgccgcgacg gcgtcattct cggcggcacg tgggaccacg gcgactggtc gctcacgccg
     2881 aacgccgagc aggcaaacaa catcctcgaa acgcacaagt ccatcatgaa cggtctgaaa
     2941 tccgcttagt atctccaact ctttagatcc gctcccggcg gcgcgctctt cgtgatgcgc
     3001 tcgacgatct tcggcgcaaa gaactggtga taacgcagcc gcgagatcgc attcggacgc
     3061 gtgtgatcgc cgttccagca atgctccgcg cgcggttcgt aatcgatctc ccctccacac
     3121 gccgggttct tcgccgtctt cgcaaaatcc tcgacgagat agacagcgtt gtttagaaag
     3181 tagttgtcag cctcgccgac gtagatgttg atcttgcccg cgagctttgg tccaagcttg
     3241 gcccaatcgc gtttgaggat gtagctgaga tcgtaattct cgcgccagta ctccgccacc
     3301 gagcgatcga tcttgccggt caacttgtcc cagatcggtt tgggataacc gtcgctgccg
     3361 acgggcgaat acaccgcttg ccagatgtcc cactgacctc cggaccggct gttggtgccg
     3421 agcgcgagct ccatgtggtt catgtcctcg accgtggcgg aaagctcgcc gagatagttt
     3481 cgcttgccgg gccgcggcat tcgtttccac ttcgaatcag cgtaataagc gttctcgtgt
     3541 tcgtagatgt tcacgacggt gtacgcgcgg aagtcgatcg gatcgggaca cgcggcccaa
     3601 ctgccgttga actcgtcggg atagaacacc tgcgcggcca tcgcttccca accgccggta
     3661 gaaccgccgt aaagaaaacg cgcccagcct ttgccgatgc cacggaaacg tttttcgatc
     3721 tcggggatca gctcgtaagt gatcgcgtcg ccgtatggac caaggttcgc ggaattgacg
     3781 gcgtatgagt cgtcgtaata cgggttcgcg tgctggatct cgatgatgat aaagcgcggg
     3841 aagtttggac cagtccagtc tttgtaaaac tggtgcgcct gttcctgaac gatgcggttg
     3901 tagccttcga gtttgaaacg cgcgctgtac tcgggcttga gattcggatc gggcggctgc
     3961 tcgcgaaagt tgccgaagtc tgccgggaaa tgtccgtgga aaatgacaag cggatagcgc
     4021 gcctcgggat gtgaatcaaa accttcgggc aacagcacgt gcgcgccgag atgcatcggg
     4081 cgcccccaga atttagtcaa gcgctcgctc tgaatcttga tgtgcttgat gtacttcgtg
     4141 tctttgggcg gctcgatcgg cgggatcact ttgtcgagtg tgatcgagat cggcgtgttg
     4201 ccgtcgatcc gcatgcgctt tggcgtgctg tagagattcc cgggcgcgcg gctccactgt
     4261 tgtccttcgc cgcggtccat cgggagttta actgtgtgac cgtcagaacg tttgaaagtt
     4321 tcgtagcgat ggagcaaagc ctgcaccgtg tactcgcctg gcggcacgtc ggccagactc
     4381 cgtcgcggat aaccaaacgc gctctggtcc aatgtcttcg actcgcccgc tttccaggcg
     4441 tccacgtcaa ctccgaagac ctgctgcgtg ttgaggtctt cattgatctg aaaacgcggc
     4501 tcaccttcat tgctggtaga gatcagcaac agcaaccggc cgtcgattgg tcccttgtcc
     4561 aacgaagcgg gaaaagacac ctcaaaccgg gcacggttct gggcagtgga tttagtggcg
     4621 acaaaaatcg agacgacagc taatgttgct agtgcgaaat ggaatatttt tttcatggcg
     4681 ggcgtctaat ttaacaggaa ctcaaaacta tgaaaacaca acgattggca atcgccttaa
     4741 cgatcatcaa tctcgcgttg acggttttcc tgctggcgca gttgcgtcgc gctgacgcgg
     4801 aagaactcga gacttctcag caaaccgcgc cggctcaaca agcagcctcg tcacaagcgg
     4861 tggcgccagt tcttcgcggc cgcgcgctcg agatcgtgga cacacaggga cgcgtccgcg
     4921 cgagcatctc agttcaacca gccgtaacag tcgactcgaa gttttatccg gaaacagtgc
     4981 tactccgcct taccgatccc aagaacggtc cagtggtgaa gctgcaagca gccgagaacg
     5041 gttcagcctt gggaatgtca gacgacgc
//
LOCUS       DASWTX010001227         1517 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_302323, whole genome shotgun sequence.
ACCESSION   DASWTX010001227 DASWTX010000000
VERSION     DASWTX010001227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302323"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..581
                     /locus_tag="VGD38_18640"
     CDS             <1..581
                     /locus_tag="VGD38_18640"
                     /inference="COORDINATES: protein motif:HMM:NF013461.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HEY0730111.1"
                     /translation="GHPRNIIMLTADAFGVLPPVARLSPEQAMYHFLSGYTAKVAGTE
                     KGIKEPEPNFSTCFGAPFMVLHPGVYADLLGKQMERHQSACWLVNTGWSGGPYGVGKR
                     MKIAYTRAMIRAILNGTLAQTDTVPDPIFGVGIPVSCPDVPNEVLQPRNTWADKDAYD
                     RQANDLARRFNENFKKYEAGVSEAVRAVAPKA"
     gene            complement(651..1001)
                     /locus_tag="VGD38_18645"
     CDS             complement(651..1001)
                     /locus_tag="VGD38_18645"
                     /inference="COORDINATES: protein motif:HMM:NF023395.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HEY0730112.1"
                     /translation="MANESCLFCKIIAGTIPAEIVHQDERCVVIRDINPQAPTHVLVI
                     PREHLESLDDAAQKDEPLLGHLLRVGARVANDEGHGEGGYRTVINTGAGAGQSVFHLH
                     VHVLAGRPLNWPPG"
     gene            complement(1024..>1517)
                     /locus_tag="VGD38_18650"
     CDS             complement(1024..>1517)
                     /locus_tag="VGD38_18650"
                     /inference="COORDINATES: protein motif:HMM:NF012497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730113.1"
                     /translation="GVVIKELNPTTLEVTCPDGLVAGDVTTEPYPQFPTDMQAQYMVL
                     MTQARGRSEIVETVFENRFMHASELQRMGAQIHIDGRSAIVDGPTPLHGAKVIASDLR
                     ASASLVIAGLIAEGETMIDRVYHIDRGYEKIEAKLSAVGAEIERDRAPVTTSQLQEVG
                     EPV"
BASE COUNT          318 a          439 c          429 g          331 t
ORIGIN      
        1 caggccatcc gcgcaacatc atcatgttga ctgcggatgc gttcggagtg ttgccgccgg
       61 tggcaaggtt gagcccggaa caggccatgt atcacttcct ttccggttac accgcgaaag
      121 ttgcgggaac tgaaaaagga attaaagaac cggaacccaa tttctcgact tgttttggtg
      181 cgccgttcat ggtgctgcat cccggtgttt acgccgacct gctcggcaag cagatggaac
      241 gtcatcagtc tgcgtgctgg ttggtgaata cgggttggag tggtggtcca tacggcgttg
      301 gcaagcgaat gaagattgcc tatacgcgtg cgatgattcg cgcgatactg aatggcacgc
      361 tggcgcagac cgatacggtg cccgatccga tttttggtgt tgggattccg gtttcgtgcc
      421 ctgacgttcc gaatgaagtg ctgcagccgc gtaatacgtg ggctgacaag gacgcctacg
      481 atcggcaggc gaacgatctc gcacggcggt ttaatgagaa cttcaagaag tacgaagcgg
      541 gtgtgtcgga agcggttcgg gcggttgcgc ccaaggcgta gggttcgcta gcgcacggcc
      601 aaagggaagg gatttattag aaccgcaagc gcaaggcgct gaattttcaa tcacccgggt
      661 ggccagttta atgggcgacc ggcgagaacg tggacgtgaa ggtgaaagac cgactgtccc
      721 gcaccggcgc ccgtattgat cacggtgcga taaccaccct caccgtgacc ttcatcattc
      781 gcgactctcg cgcctacacg aagcagatgg cccaacaacg gttcgtcctt ttgcgcagcg
      841 tcgtcgagtg attcgaggtg ctctcgcggg atcactaaca cgtgcgtcgg cgcctgcgga
      901 ttgatatccc gaatcaccac gcaacgctcg tcctgatgca caatttccgc cggtatcgtt
      961 cccgcgatga tcttacaaaa cagacaactc tcgtttgcca tcacttctcc ttaactagaa
     1021 acctcaaacc ggttcgccaa cttcctgcaa ctgactcgtc gtcaccggcg ccctgtcgcg
     1081 ttcaatttcc gcgccgaccg ccgaaagctt cgcttcgatc ttctcgtaac cgcggtcgat
     1141 gtggtaaacg cgatcgatca tcgtttcacc ttccgcgatc aatccagcaa tgaccagcga
     1201 agccgacgca cgcagatccg acgcgatcac tttcgcgccg tgcagcggcg ttggaccatc
     1261 gacgatcgca ctgcgcccat cgatatgaat ctgcgcgccc atgcgctgta actccgacgc
     1321 gtgcatgaag cggttttcaa aaactgtttc gacgatctct gatcgtccgc gcgcctgcgt
     1381 catcaggacc atgtactgcg cctgcatgtc agtcggaaac tgcggatacg gctcggtcgt
     1441 gacgtcgcct gcgacgagac cgtccgggca agtaacttcc aacgtggtcg gattcagttc
     1501 cttgatcacg acgccgg
//
LOCUS       DASWTX010001228         4568 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_254163, whole genome shotgun sequence.
ACCESSION   DASWTX010001228 DASWTX010000000
VERSION     DASWTX010001228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4568
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254163"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1253)
                     /locus_tag="VGD38_18655"
     CDS             complement(<1..1253)
                     /locus_tag="VGD38_18655"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0730114.1"
                     /translation="MKNECCGVRKSISLLSVFLIALIALSGCTNAEKAKAEHVRRGDA
                     YLKEQKFQEASLEYRNAIQIDDKLAAAHWGLAQAYEGLQRFPEMITELQKTNELDKGN
                     LESRIKLGNYFLAASAGRPELLGEAERLVRETLEKDNNHIEGHILMGGIYFARKERDK
                     AFAELNRAIELNPSRVESYLSMARFYIVTSERDKAEELFKRAISLNPNSPLAHSEYGK
                     FLVQGNRLPEAEAELLKAVEVGPTDRNAHFVLASFYLVNRQLDKAENQYKALAALDQD
                     KPENQAVLADFYSSIGRGDDAVRIYKEILTKSPDYLQGRYRLSEILLQRGDPDGAVAQ
                     IDEALKKDQHDRQARLLRARVRMQKQQPEALKAAIEDLKDVLRQEPNSRAGLYCMAVS
                     NSRRLAIVVPMISSCFQNNTRMSIAA"
     gene            complement(1356..2000)
                     /locus_tag="VGD38_18660"
     CDS             complement(1356..2000)
                     /locus_tag="VGD38_18660"
                     /inference="COORDINATES: protein motif:HMM:NF023410.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EpsI family protein"
                     /protein_id="HEY0730115.1"
                     /translation="MTKSSTLRFAILLVAIIGVGVFVNAWAYLGEAHVERKALKDFPE
                     QLGEWRKNKDQMIDEPTMKVLRASDYLLRDYQQPDGRAANFYVGYYASQREGATYHSP
                     LNCLPGSGWTLTQPDTVTISLPDGRSFGANKYVIQNGDYKSLMIYWYQGRGRAVASEY
                     WGKVYTVIDSVRLRRSDGAMVRVTVPIGDSETAALDSAKDLSAKAAAALDEYVP"
     gene            complement(1997..2989)
                     /gene="xrt"
                     /locus_tag="VGD38_18665"
     CDS             complement(1997..2989)
                     /gene="xrt"
                     /locus_tag="VGD38_18665"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: protein motif:HMM:NF021254.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004197 - cysteine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0043687 - post-translational protein
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exosortase"
                     /protein_id="HEY0730116.1"
                     /translation="MSVPAIRHYWRAFAIAFAILFTYAAVLVKLSRDWWVDENYSHGL
                     LVPFIIGFILWLQRDKFAAEPARPSVLLGGLAVAFSLFALWTGVAGAELYTQRMSLVL
                     LIAGTVVYFFGLGFLRLMLVPLGLLILAIPIPAIIFNKIAFPLQLFASRCAVWSMSML
                     GIPVLRQGNVIELKPLNSFDTKKLEVVEACSGIRSLMTLMTLAVVFAYFTHPRSNNSG
                     GPRGKFGWLRSYGFWRSTIIVLSAVPIAILTNASRVSGTGILSHYYGTGVADGFFHSF
                     SGWAIYIVAFLLLFLVGWIVDRFRPRSVGKPDNKGPREHATVASTTVLPAEGTE"
     gene            3348..4046
                     /locus_tag="VGD38_18670"
     CDS             3348..4046
                     /locus_tag="VGD38_18670"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025217.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY0730117.1"
                     /translation="MLARTETLERYRAPPETTIFPLEYAFHLLGDVRGKTILEYGCGD
                     GENTVVLANRGARIIALDISAELLGVARKRLDVNNCHDVDLLIGSAHSLPLPDESVDV
                     IFGMAILHHLELDLAAREVCRVLKKDGRAIFEEPTRNSKLVAKLRALFPQRAEVSPYE
                     RPLTTKEMKEFAGPCRFQAKTFQLVFSSLASFVPRWTRQVTRLSARLDTYLLRHFPAL
                     DYYGSVTVFQMVKQ"
     gene            complement(4235..>4568)
                     /locus_tag="VGD38_18675"
     CDS             complement(4235..>4568)
                     /locus_tag="VGD38_18675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730118.1"
                     /translation="ENVGPDKRTRLSLFATGISGSVSNSDITNDIKLGPGLVRPNFAE
                     SISVEARGSNGNVYTLPVEFAGAQGVLPGLDQITVRLIPELRGAGVVQLTLVVGSRRS
                     NTPTVFIK"
BASE COUNT         1048 a         1333 c         1242 g          945 t
ORIGIN      
        1 gcggcgatcg acattcgcgt gttgttctgg aagcagctcg agatcatcgg cacaacaatg
       61 gccaaccggc gcgagtttga gacggccatg cagtacaaac cggcgcgcga gtttggttcc
      121 tggcgcaaca cgtctttgag atcttcaatc gcagctttga gtgcttcggg ctgttgcttc
      181 tgcatccgga cgcgcgcgcg caacaaacgc gcctggcgat cgtgctggtc cttcttcagc
      241 gcttcgtcga tctgggcgac ggcgccgtca ggatcgccac gttgcaggag gatctcggac
      301 aaacgataac gtccctgcag atagtcggga gacttcgtaa gaatttcctt gtagatgcgg
      361 accgcgtcgt cgccacggcc gatcgaggaa taaaaatccg cgagcacggc ctggttctcg
      421 ggtttgtcct gatcgagagc ggcaagtgct ttgtattggt tctcggcttt gtcgagctgc
      481 ctgttgacga gatagaagct cgccagcacg aagtgcgcgt tgcgatcggt tgggccaacc
      541 tcgacggcct tgagcagttc cgcttcggct tccggcagac ggttcccctg gaccaggaac
      601 ttgccatact cggagtgcgc gagcggtgag ttcgggttaa gactgatcgc gcgcttgaac
      661 agctcttcag ctttgtcgcg ctcgctggtg acgatgtaga accgcgccat gctgagatac
      721 gactcaacgc ggctcggatt caattcgatc gcgcgattca gttccgcaaa ggccttgtct
      781 ctttccttgc gggcgaaata gataccgccc atcaggatat ggccttcgat gtggttgtta
      841 tctttctcga gcgtctctct cacgaggcgt tcggcttcgc cgagaagttc cggacggcct
      901 gcgctggcgg cgagaaagta gttgccgagt ttgatgcgcg actcgaggtt gcccttgtcg
      961 agctcgttgg tcttctgcag ctcggtgatc atctcgggaa aacgctgcag tccttcgtaa
     1021 gcctgagcga gaccccagtg cgcggcagcc agtttgtcgt cgatctgaat ggcgttgcga
     1081 tactcgagcg acgcttcctg aaacttctgt tctttcaggt aggcatcacc gcgccgtacg
     1141 tgttcggctt tggccttttc agcgttggta cagccgctca gcgcgattag cgcaatcagg
     1201 aagacagaaa gaagggagat agatttgcgg acaccacagc actcgttttt catacttttt
     1261 ccccatactc cgcgacttca gcgggcaaag ccggaggcgc ggattactta atcactaact
     1321 ctaaataacc aatcccaatc tgatttccag tttaatcaag ggacatattc gtccaacgcg
     1381 gcggccgcct tcgctgagag gtctttggcc gaatccaacg ccgccgtctc agaatcaccg
     1441 atcggcacgg tcacccgcac catcgcgccg tccgaacggc gcagacgaac gctatcgatc
     1501 accgtgtaaa cttttcccca gtattcactc gcgaccgcac gcccgcggcc ctggtaccag
     1561 tagatcatca ggcttttgta atcgccgttt tggatcacgt acttgttggc gccaaacgac
     1621 cgcccgtcgg gcagcgagat cgtgaccgtg tccggttggg tcaacgtcca gccggagccc
     1681 ggcagacagt tcaagggact gtgatacgtc gcgccttcgc gctggcttgc gtagtaaccg
     1741 acgtaaaagt ttgccgcgcg gccgtccggt tgctgatagt cgcgcagcag gtaatcgctg
     1801 gcgcgcaaca ccttcatcgt cggctcgtcg atcatctggt ccttgttctt ccgccactcg
     1861 cccagttgct cgggaaaatc tttcaacgct ttgcgctcga catgcgcttc gccgagatag
     1921 gcccatgcgt ttacgaaaac gccaacaccg ataatcgcga cgagtaagat ggcaaaacgc
     1981 aatgtagacg acttagtcat tccgtacctt ccgctggtaa taccgttgtt gatgcgacag
     2041 tggcgtgttc gcgcggaccc ttattgtccg gtttaccgac actgcgtggt ctaaaccggt
     2101 ccacaatcca acccaccagg aacaggagca ggaaagcaac aatatagatg gcccaacccg
     2161 agaacgaatg gaagaaacca tcagcaacgc ccgtgccgta gtagtgtgaa agaatgcccg
     2221 tgccgctcac gcgcgaggca ttagtcaaaa tcgcgatcgg cactgccgaa agcacgatga
     2281 ttgttgaccg ccagaaacca taactgcgca accacccgaa cttgcctctt ggaccacccg
     2341 aattattcga tcgcggatgc gtgaaatacg caaacaccac cgcgagcgtc atcaacgtca
     2401 tcaacgaacg aattccacta caagcctcaa ccacttccag tttcttcgtg tcgaaggaat
     2461 tcagtggttt caactcgatg acgttgcctt gccggagcac gggaatgccg agcatgctca
     2521 tggaccagac ggcgcagcgc gacgcaaaaa gctgtaaggg gaaagcgatc ttgttgaaga
     2581 tgatggcggg aatcggaatc gccagtatca ggagtcccag cggcacaagc atgagccgca
     2641 aaaagccgag tccgaagaaa tagaccaccg ttcccgcaat caacaacacc agcgacatcc
     2701 gctgtgtgta aagctcagcg cccgccacac cggtccaaag tgcaaacagc gaaaacgcga
     2761 cggccagccc gcccaggagc accgagggac gagccggctc cgccgcaaac ttatcgcgct
     2821 gcaaccagag gataaaaccg attatgaagg ggaccaacag accgtgcgag tagttctcgt
     2881 ctacccacca gtcgcgggag agcttcacca acaccgcggc gtaggtgaaa agaatggcaa
     2941 aagctatggc gaaggcacgc caatagtgcc ttatggccgg gacactcata caggttcctt
     3001 gtgctcattc ccaacaagaa aagggcaatt tctcttgcga gaatgtgggc gaccctgaaa
     3061 atcttcaccc ggattcgtaa ttggggagaa agcttatctt agatcgtggc tcctgacaac
     3121 atgcacggcc caccgatcaa ctgaaagaaa acgacgaaac accctgcctt tccaaaatct
     3181 cgactttgtg ccaatcgtgt gctgtaattc acacaaacct actcggaaca gggttcccac
     3241 accaatgacg atgaggtact cccacaatga tctcgctcga tcgccgagag cacgcggaaa
     3301 tactccgcag tgctcgggaa gcaggcgaag cccggaaaac ctcgcgcttg ttagccagaa
     3361 cagaaactct cgaacgctat cgcgctcccc ctgaaacaac aatctttccg ctggaatacg
     3421 cctttcattt gctcggcgac gtgcgcggca aaacgatcct ggaatacggc tgcggcgacg
     3481 gcgagaatac agtcgtgctc gccaatcgcg gcgcccggat catcgctctc gacatctcag
     3541 cggaactgct cggcgtggcc cgaaagcgtc tcgacgtgaa caattgtcac gatgtcgatc
     3601 tattgatcgg ctccgcacac agcctgccgc tgccggatga gtcagtagac gtcatcttcg
     3661 gcatggcgat tcttcaccat ctggaactcg atcttgcggc gcgtgaagtt tgccgcgtgt
     3721 tgaagaagga tgggcgggcg atattcgagg aaccaacgcg gaattcaaag ctggttgcga
     3781 agctcagagc tttgtttccg cagcgcgctg aggtctcacc gtacgagcgt ccgttgacga
     3841 ccaaggagat gaaagagttt gcgggcccgt gccgatttca ggcgaagacg tttcagctcg
     3901 tgttctcgag tctcgcctcg ttcgtgccac gttggaccag gcaggtgacg agactcagcg
     3961 ctcggttgga tacttacctg ctgcggcact tcccggcact cgactactac ggatctgtaa
     4021 ccgtgttcca gatggtcaag cagtaacccg aacacgttca ttaagtttgc cggaacacgt
     4081 tcatttcagc caaagcaacg ccgaaggcgt tacacgttcc aataaaaatg cccaacacct
     4141 ataaaaacac ccaacaccta caccacaaag actccgaaac tgaaaacaca acaaagcaac
     4201 gccacacaac aactgaaccg attaccccgt ttctttactt gatgaagacc gtgggcgtgt
     4261 tgctgcggcg gctgccgacg accaatgtca gttggaccac tccggcgcca cgcaattcgg
     4321 ggatcagccg gacggtgatc tggtccagac caggcagcac gccctgggcg ccggcaaatt
     4381 caaccggcaa ggtgtagacg ttgccgttgc tgccgcgcgc ttcaacggag atcgattccg
     4441 cgaagttcgg ccgcacgagg cccgggccca gtttgatgtc gttggtgatg tcggaattgc
     4501 tgacgctgcc gctgattccg gtcgcgaata ggctgagccg cgttcgcttg tcaggaccaa
     4561 cgttctcc
//
LOCUS       DASWTX010001229         3294 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_321613, whole genome shotgun sequence.
ACCESSION   DASWTX010001229 DASWTX010000000
VERSION     DASWTX010001229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3294
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321613"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..436)
                     /locus_tag="VGD38_18680"
     CDS             complement(<1..436)
                     /locus_tag="VGD38_18680"
                     /inference="COORDINATES: protein motif:HMM:NF044507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730119.1"
                     /translation="MPSIYDDLQPLDLDKVKTYPLASRTSKVKLDDFARAMGDNASLA
                     EFLERLPNVLAVQSLRKIVERMQRARDLGKPIIWGIGGHVIKTGLAPLIIDLMRRGYV
                     SAVAANGSVLVHDAEIAMNGSTSEDVDASLSEGVFGGAEETGR"
     gene            complement(455..892)
                     /locus_tag="VGD38_18685"
     CDS             complement(455..892)
                     /locus_tag="VGD38_18685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730120.1"
                     /translation="MNLQEDLKEFVELLNVHDVRFLIVGAFAVAYHGYPRYTSDIDIF
                     VGKSPENAELLIKVINAFGFGEIGLTKDDFMQKDQIIQLGVAPNRIDVMTFLSGVSFE
                     EAWSSRELGELGGITLPFISRDMLKRNKAATGRSQDLADLEHL"
     gene            complement(1104..>3294)
                     /gene="uvrA"
                     /locus_tag="VGD38_18690"
     CDS             complement(1104..>3294)
                     /gene="uvrA"
                     /locus_tag="VGD38_18690"
                     /inference="COORDINATES: protein motif:HMM:TIGR00630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEY0730121.1"
                     /translation="LTDSSRTALKLTSGAVLISIVDGEEKLYSERMACVNCGINVPPL
                     EPRSFSFNSAYGACKRCHGLGTVMEIDSLKLIPEAWQTPEKLGFMGTADKQGSAYLRS
                     ALLAVVKHFRADPKTPFEELPKEVRDGFLNGVPGKLTFTQGLYTYQNEWKGALSWVKE
                     RLNEAPSEKIRIALEGLVSPTVCSECGGRRLRSDSLSVQVGGRGIAEYTALPIDDAVA
                     AFEQVSLNSREEQIAGPILREIKNRLQFLKTVGLGYITLDRASSTLSGGEGQRIRLAT
                     QIGSQLRGVLYVLDEPSIGLHPRDNQKLLETLSALRDLGNTVLVVEHDEETIRRADYV
                     VDLGPRAGAHGGEVVAVGTAEDIAENPESITGLYIRGARKIEVPAERRAPNGKYLTIR
                     GAYANNLKEIDASFPLGLLTVVTGVSGSGKSTLVEDILYYALARHLYGSLNEPGPHRA
                     IEGLEHVDKVIEIDQSPIGRTPRSNPATYTGLFTPLRELYAMLPESRERGYKPGRFSF
                     NVKGGRCEACEGDGMKRIEMNFLPDVYVLCDVCRGARYNRETLSVKYKGKSIADLLDT
                     TVEEALPLLENIPQINQKLQTLLDVGLGYIKLGQSATTLSGGEAQRIKLAKELSKRAT
                     GRTIYILDEPTTGLHFADVHKLLDVLQRLVSLGNTVLVIEHNLDVIKSADYIIDLGPE
                     GGEHGGRVVAAGTPEEVARSRRSHTGHVLRPLLNGRLQRNENGSHSQ"
BASE COUNT          714 a          985 c          873 g          722 t
ORIGIN      
        1 gtctgccagt ctcttctgca cctccaaaca caccttctga caacgaggcg tcgacatctt
       61 ccgaagtcga accattcatc gcgatctccg cgtcatggac cagcaccgat ccattcgccg
      121 caacggccga aacatacccg cgcctcatca gatcgataat cagcggcgcc aatccggttt
      181 taattacgtg cccaccaatc ccccagatga tcggcttccc caaatctctc gcacgctgca
      241 ttcgctcgac gatcttcctg agcgattgaa ccgcgagcac attcggcagc ctctcgagaa
      301 attccgctaa cgaagcgttg tcgcccatcg cccgcgcaaa atcatccagc ttgaccttac
      361 tggtgcgtga ggcaagcgga tacgtcttta ccttatctag gtcgagcggc tgcaggtcgt
      421 cgtagattga tggcaactat tcgtgactcc gagatcagag gtgttccagg tcggctaagt
      481 cctggctgcg accagttgct gccttgttac gtttcaacat gtcgcgcgat ataaagggaa
      541 gcgttattcc accaagctca ccaagctcac gcgaagacca cgcttcttca aagctgacac
      601 ccgaaagaaa agtcatcacg tcgattcggt ttggggcgac tccgagttga attatctgat
      661 ccttttgcat gaagtcgtct ttggtgagcc caatctcacc aaagccaaac gcattgatta
      721 cttttataag taactctgcg ttctcgggcg acttccccac aaagatatct atgtccgacg
      781 tgtatctggg ataaccgtga taggcaaccg cgaaagctcc gactatcagg aagcgtacgt
      841 catggacgtt caataattcg acaaactctt tcaaatcctc ttgtaagttc atcggaatag
      901 ggactgaact gatctctgag cactagcaag atatcgagcc gctgagcagg cgaaagagat
      961 tggtaatact ccctgtcagc cgcttcagcc tcttcgaagg atgagaaaac cctgaatgcg
     1021 gtcttgtcta atctgccgct cttcaacgag tcattcataa cagacgaaag tataacacgc
     1081 tgtgtgggcc gtgctttaga acgctactga gagtgggagc cgttttcgtt gcgttggagg
     1141 cggccgttga ggagcgggcg gaggacgtgg ccggtgtggg agcggcgcga gcgcgcgact
     1201 tcttcgggtg tgcctgctgc gacgacacgg ccgccgtgtt caccgccttc cgggccgaga
     1261 tcgatgatgt agtcggcgct cttgatgacg tcgagattgt gttcgatgac gagcactgtg
     1321 ttgccgagcg agaccaggcg ttgcagcacg tcgagcagtt tgtgaacgtc ggcgaaatgt
     1381 aaacccgtgg tcggttcgtc gagaatgtag atggttcggc cggtcgcacg tttcgacagt
     1441 tcttttgcga gcttgatgcg ttgcgcttcg ccgccggaaa gcgtcgtcgc cgattggccc
     1501 aacttgatgt aacccaagcc gacatcgagc agcgtctgca acttctgatt gatctgcgga
     1561 atgttttcca gcagcggcaa cgcttcttcg accgtcgtgt cgagcagatc cgcgatcgat
     1621 tttcccttgt acttcacgga aagcgtttcg cggttgtaac gcgcgccgcg gcacacatca
     1681 cagagcacgt agacgtcggg aaggaagttc atctcgatgc gcttcatgcc gtcgccttcg
     1741 cacgcttcgc aacgcccgcc tttgacgttg aacgaaaagc gcccgggttt gtaaccgcgt
     1801 tcgcgcgact ccggcagcat cgcgtaaagc tcgcgtagcg gcgtgaacag accggtgtac
     1861 gtcgctggat tcgagcgcgg cgtacgcccg atcggcgact ggtcgatctc gattaccttg
     1921 tcgacgtgtt cgagcccttc gatcgcgcgg tgtggtccag gctcgttcaa cgaaccgtaa
     1981 agatgtcgcg cgagtgcgta atataaaatg tcttcaacaa gcgtcgactt acccgaaccg
     2041 gaaacaccgg tcacgacagt caacagcccg agcggaaacg acgcgtcgat ctctttcagg
     2101 ttattcgcgt acgcaccgcg aatcgtcagg tacttgccgt ttggagcgcg gcgttcggcg
     2161 gggacttcaa tcttgcgagc accgcgaatg tacagtcccg tgatcgactc cggattctcc
     2221 gcgatgtcct ccgccgtacc aactgccaca acctcgccac cgtgcgcgcc ggctcgtggc
     2281 ccaagatcga caacataatc agcgcgccga atcgtctctt cgtcgtgttc gacaaccaaa
     2341 accgtattgc cgagatcgcg cagcgccgac agcgtttcca aaagcttttg attgtctcgt
     2401 ggatgtagcc cgatcgacgg ttcgtcgagg acgtaaagca caccgcgcaa ctgcgaaccg
     2461 atctgtgttg cgagtcgaat gcgctggccc tcgccgccgg ataacgtcga ggaagcccga
     2521 tcgagcgtta tgtaacccag accgacagtc ttcagaaact gcaaacgatt cttgatctcg
     2581 cgcaggattg gaccagcaat ctgctcttcg cgcgagttca acgaaacctg ttcgaacgcc
     2641 gcaaccgcat cgtcgatcgg cagcgccgtg tactcggcaa taccgcgccc accgacttgc
     2701 actgaaagcg aatccgaccg cagccgccgt ccaccgcact cgctgcatac cgtaggcgaa
     2761 accagtccct cgagtgcgat cctaatcttc tccgacggcg cctcgttcag tcgttccttg
     2821 acccaactca gcgcgccttt ccactcgttc tgatacgtat aaagcccctg agtgaaggtt
     2881 aatttgcccg gaactccgtt cagaaatccg tcgcgaactt ccttcggcaa ctcttcaaac
     2941 ggcgttttcg gatccgcgcg gaaatgctta accacggcga gcagcgcgct gcgaagatac
     3001 gcggacccct gcttgtcggc ggtgcccatg aacccgagtt tctccggagt ctgccacgct
     3061 tcgggaatca acttcagcga gtcgatctcc atcactgtgc cgagcccgtg acaacgtttg
     3121 cacgcgccat aggcagagtt gaacgaaaac gagcgcggct cgagcggcgg aacgttgatg
     3181 ccgcagttca cacacgccat gcgttccgaa taaagcttct cttcgccgtc cacgatcgaa
     3241 atgagcaccg cgccactcgt caacttcaga gccgtgcgac tcgaatcggt taac
//
LOCUS       DASWTX010001230         5649 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_82136, whole genome shotgun sequence.
ACCESSION   DASWTX010001230 DASWTX010000000
VERSION     DASWTX010001230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5649
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82136"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1184)
                     /gene="ftsH"
                     /locus_tag="VGD38_18695"
     CDS             complement(<1..1184)
                     /gene="ftsH"
                     /locus_tag="VGD38_18695"
                     /inference="COORDINATES: protein motif:HMM:TIGR01241.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEY0730122.1"
                     /translation="MLYKLVNPRGNSYQTVDLTKMDQLIQSGNLKSLVVKQSESVAID
                     NNNTEYRAALSNEQAKAELLKSAREVVNGKSRVPKVEEESSASFIWPMLITWAPLLFI
                     IAIWIFMLRQMQSGGNKALSFGKSRAKLLNNQQKRVTFKDVAGVEEAKEELQEIIEFL
                     KEPQKFQKLGGRIPKGVLMMGPPGTGKTLLARAIAGEANVPFFSISGSDFVEMFVGVG
                     ASRVRDLFEQGKKKAPCIIFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFES
                     NDGVILIASTNRPDVLDPALLRPGRFDRRVVVSRPDVRGREGILKVHTRKIPLGEDVD
                     ISVIARGTPGFTGADLANLVNEAALNAARYNKKLVAMGDFELAKDKVLMGAERKSMVI
                     SN"
     gene            complement(1438..2487)
                     /gene="tilS"
                     /locus_tag="VGD38_18700"
     CDS             complement(1438..2487)
                     /gene="tilS"
                     /locus_tag="VGD38_18700"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR02432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEY0730123.1"
                     /translation="MRRVPRINQFSRLLLVEWRKLKLPTANETVVVGVSGGADSTALL
                     LALHELRSAGKLSTNICVAHLDHKLRKTSSQDARWVSAFAAKLGYECVIGRAKVAELA
                     RANNDNLEQAARQARYAFLERTAKRKGAHYVLTGHTMDDQAETVLMRLMRGSAGAGLG
                     GMEAMRPLAGNASIQLVRPLLWARRNDTESYCRLRKAEYLVDEMNADSTLSRVRVRQQ
                     LLPLMQSFNNRIVEALSRTAAQLREDRAVLLTDSDELLQRASLAGGDDGDETKAPPLN
                     VKLLANEPPALRRRALRQWLSQARGSARRLEMVHLLAVEKLLEGNTGGRTVELPGGGR
                     VKRVKNRLEFEPKTN"
     gene            3016..5130
                     /locus_tag="VGD38_18705"
     CDS             3016..5130
                     /locus_tag="VGD38_18705"
                     /inference="COORDINATES: protein motif:HMM:NF021942.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S46 family peptidase"
                     /protein_id="HEY0730124.1"
                     /translation="MKSRRFLAALLLALFSLSTLHVTALADEGMWTFNNVPRAEIKKK
                     YGFEVTDEWLNKVRLASVRFNNGGSGSFVSPDGLVLTNYHIVEGIVGEVSTPQKDLAK
                     EGFVAKTRAEEIKAPSLELNVLMSIEDVTSRVNDAAKAGATDAEAFAARRAEISKIEA
                     ESSKETGLRSDVVILYQGGQYNLYRYKKYTDVRLVFVPEFQAAFFGGDPDNFNFPRYN
                     IDMALVRVYENNQPVHPENYFKWSTAGPKEGGLVFVTGHPGSTSRLNTVAHLTQLRDT
                     SIPIVIRVLERREALLKKYMAMGEEQTRQAQSELNSVQNGLKVYRGQLAGLKDPSLLA
                     RKQKEEDALRKAIAANPERQKMYGDAWDAIAKAHQTYPTYVRERRIFDLAGGFNSTLF
                     TFARTLVRLAAENQKPNAERLLEFTDARRASLELALYSPAPIHEDFDKLKLTDSLSFM
                     IELLGADNPLVKQVMDGKTPEARAEELITGTKLKDPAYRKELAAGGAKAIADSTDPMI
                     VVAREIDAKARELRKRFESEVIGVERANYAKIARALFETEGTNLYPDATFTLRLSYGT
                     VAGYMENGKKVPPFTTLGGLFARSEQFKRQFPYNLPQRWYDKKPALDLNTPFNFVTTN
                     DIIGGNSGSPTINQNGELVGLIFDGNIQSLVGDFMYDGSVNRAISVDSRGMLEVLKKV
                     FNANEVAAELTGAAASTKAAGR"
     gene            complement(5127..>5649)
                     /locus_tag="VGD38_18710"
     CDS             complement(5127..>5649)
                     /locus_tag="VGD38_18710"
                     /inference="COORDINATES: protein motif:HMM:NF044424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730125.1"
                     /translation="YVAMTRAERFLYVTHAMKRRVYGEELASEPSQFLNEMPIDMLED
                     LSLGKSWLSFARGSSAIDYEQGEYRKEKKKYMGKTYDSVDSIAEFFKQRSRQLGEVPA
                     KGQQRSAPAPKAAPAANSGEFVPGSYVKHSKYGRGLVLRREGAGESTKLTVSFPGYGQ
                     KKLVEKYAGLEKA"
BASE COUNT         1202 a         1636 c         1588 g         1223 t
ORIGIN      
        1 tcgttcgaga tcaccatgct cttgcgctcg gcgcccatca gcaccttgtc tttggcgagc
       61 tcgaagtcgc ccatcgccac cagcttttta ttgtaacgtg cggcgttaag agcggcttcg
      121 ttcacgaggt tcgcgagatc ggcgccggtg aagccaggtg ttccgcgagc aatcacggag
      181 atgtccacgt cttcacccag cggaatcttg cgtgtgtgaa ctttcaggat gccttcgcgg
      241 ccgcgaacgt caggtctgga gacgacgaca cgtctatcaa atcgcccggg tcggagcagc
      301 gccggatcca gcacgtccgg acggtttgtc gatgcgatca ggatcacgcc gtcgttcgac
      361 tcgaagccgt ccatctcgac cagcaactgg ttcaacgtct gttcgcgctc gtcgtgaccg
      421 ccgccaagac cggcgccacg atgacggccc accgcatcga tttcgtcgat gaagatgatg
      481 cacggcgcct tcttcttgcc ctgttcgaac aggtcgcgaa cacgcgacgc gcccacgccc
      541 acaaacatct cgacgaagtc agaacccgaa atcgagaaga agggaacgtt tgcttcgccg
      601 gcaatcgcgc gggccaacaa ggtcttgccc gttcccggcg gtcccatcat caaaacgccc
      661 ttcggaatac gtccgccgag cttttgaaac ttctgcggct ccttcaggaa ttcgatgatc
      721 tcctgaagct cttccttcgc ctcttcaaca cccgcaacgt ccttaaacgt gacgcgcttc
      781 tgttggttgt tcagcaattt cgcacgggac ttcccgaacg ataacgcctt gttcccgccc
      841 gactgcatct gccgcaacat gaatatccag atggcgataa tgaataagag cggcgcccac
      901 gttatcagca tgggccagat gaaactcgcg ctcgactctt cttcaacctt cggaactcgt
      961 gattttccgt tcaccacctc gcgcgcggat ttgagcagtt cagccttggc ctgttcgttg
     1021 gatagagctg cgcggtattc cgtgttgttg ttgtcgatcg cgacgctttc gctctgtttg
     1081 accactagcg atttcaggtt accgctctgg atcaactgat ccatcttggt caaatcgacg
     1141 gtctggtagc tgttgcctcg cgggttgacg agcttataga gcaaaagagc ccctgcgatg
     1201 atcaggagcc aaaaaacgat ctgtctagca gtagaactca aattcattaa cgcctccggc
     1261 ccgcgataat aacttatcgg agcctcattt gtcgctgtcc tgcccgaaaa ccgggctcaa
     1321 atcgaaactt tacgatgcac gtgtacgaca tctcgttgcg cccacgctgc ctgcgatagt
     1381 aacaccgcgg agcgcggcat cgtggccttt tgactataaa gtttgaatgc cccgttttca
     1441 attggttttg ggctcaaatt ccagccggtt tttgactcgt ttgactcttc ctccgccggg
     1501 caattcgacg gttcggccac ccgtgttgcc ctccagcaac ttttccaccg ccagcaggtg
     1561 aaccatctcc agccgccgcg cgcttcctct cgcctgcgac agccactgcc gcaaagcgcg
     1621 ccggcgcaag gcgggcggct cattggccag gagctttacg ttcaaaggcg gcgctttggt
     1681 ttcatcgccg tcgtctccgc cggcgagcga cgcccgttgc aacagttcgt ccgagtcagt
     1741 caaaagtacc gcgcgatctt cacgcaactg ggctgccgtg cgagacaacg cttcgacgat
     1801 gcggttattg aacgactgca tcagcgggag tagctgttgg cgcacgcgta cgcgagagag
     1861 cgtcgaatcg gcgttcatct cgtcgacgag atactccgct ttgcgcaggc ggcagtagga
     1921 ttcggtgtcg ttgcggcgtg cccagagcag tgggcgaacg agttgaattg aagcattgcc
     1981 ggcgagcggg cgcattgctt ccataccgcc gagtcccgcg cctgcactac cgcgcatcag
     2041 tcgcatgagc acggtctcgg cctggtcgtc catcgtgtgg ccggtcagga cgtagtgtgc
     2101 gcctttgcgt ttggcggtgc gttcgagaaa ggcgtagcgc gcctgccgtg cggcttgttc
     2161 gaggttgtcg ttgttggcgc gagcaagctc ggcgactttc gcgcgcccga tgacgcactc
     2221 gtaaccgagc ttcgccgcga atgcggaaac ccaacgcgcg tcctggctgc tggtttttcg
     2281 cagcttgtga tcgaggtgcg cgacgcagat gtttgtagac agcttgcccg cggatcggag
     2341 ctcgtgcaaa gcgagcagca aagcagtcga atcggcgccg ccggacacgc ccacgactac
     2401 ggtttcgttt gccgtcggaa gcttcagctt gcgccactcg accagcagca aacgcgaaaa
     2461 ctgattaatg cgaggcactc tgcgcatgcg cgtgattgtg aggcgcgaac aagctcaggt
     2521 caaccaatct tttgtctgct tacccgtcaa aagtttcgcg acgaagccaa cacattttga
     2581 tgaaactaac gcgtagtttg tcatttaaaa gactcagctc tcgtattcaa ataccgcgcg
     2641 aacgtttggg gggtaattcc atgagggtgg aaaagcagat tagattcaac gagtggctgc
     2701 tgggctctac gattctctgt cagtcgtgcg gttgtttgtg gttagtcccg gcagcgcaaa
     2761 acgaagatcg gtatacctgc cgccagtgtg gcagcgaggt gacgagtaaa ccggtcgtgc
     2821 gcccagagca ggcgagtaaa acctcaacca cgcgctagtg attcagaagt agcgcaacct
     2881 tcacaccttc acgatttgac tattacccct cgcgggttta cgtttttgtg tgtctgcgtc
     2941 ccaacggggc atctaattcg acggttctgc gctctaagat cgtctcctgc aactactact
     3001 ctcgaggatt agtcgatgaa atcaagaaga ttcctggcgg cgctgttact ggcgctcttc
     3061 agtctttcaa cgctccacgt tacggccctc gccgacgagg gaatgtggac gttcaataac
     3121 gttccgcgag ccgagattaa gaaaaagtac gggttcgaag ttaccgacga atggttgaac
     3181 aaggttcgac tcgcatccgt caggttcaat aacggcggtt ccggttcgtt tgtctcgccg
     3241 gatggtttgg tgttgaccaa ctatcacatc gtggaaggca tcgtgggcga agtcagcacg
     3301 ccgcaaaaag atttggcgaa ggaaggtttt gttgcgaaga cgcgagctga agagatcaaa
     3361 gcgccaagcc tcgaattgaa cgtgttgatg agcattgaag acgtcacttc acgcgtcaac
     3421 gacgctgcga aagccggcgc caccgatgcc gaagcgtttg ccgcccggcg tgcggagatc
     3481 tcgaagatcg aggcggagtc gtcaaaagag accggcttgc ggtccgacgt cgtgatcctc
     3541 tatcaaggtg gtcaatacaa tctctatcgc tacaagaagt acaccgacgt gcgcctggtg
     3601 ttcgtgcctg agtttcaggc cgcgttcttc ggcggcgatc cggacaactt caacttcccg
     3661 cgctacaaca tcgacatggc gctggtccgc gtgtacgaga acaaccagcc agtgcatccc
     3721 gagaattact tcaagtggtc caccgcaggt cccaaagagg gaggcctcgt gttcgtgacc
     3781 ggccacccgg gctcgacctc gcgcctgaat accgtcgcgc atcttacgca actgcgcgac
     3841 acgagcattc caatcgtcat tcgcgtgctc gaacggcgcg aagccttgct caagaaatac
     3901 atggcgatgg gcgaagagca gacacgccag gcacaaagcg aactgaacag tgtgcagaac
     3961 ggtttgaagg tttatcgtgg ccaactcgcc gggttgaaag atccctcgtt gttggcccgt
     4021 aagcagaaag aggaagacgc gctgcgcaaa gcgatcgctg caaacccgga acgtcagaag
     4081 atgtacggcg atgcgtggga cgcgattgcc aaagcacatc agacgtatcc cacttatgtt
     4141 cgtgaacgtc gcatcttcga tctagccggc ggtttcaaca gcacgctgtt caccttcgcg
     4201 cgtacgctcg ttcggttggc ggctgaaaat cagaaaccaa acgccgaacg tctgctcgaa
     4261 ttcacagacg ctcgtcgcgc ttcgctggag ctcgcgctct attcgcccgc tccgattcac
     4321 gaggacttcg acaaactgaa actcaccgac tcgctgagtt tcatgatcga actgctcggc
     4381 gctgacaatc cgctcgtaaa gcaagtgatg gacggcaaga cgcccgaagc acgagccgag
     4441 gagctgatca cgggcacgaa gctgaaggat ccggcttatc gcaaagaact ggcggccggt
     4501 ggcgcgaagg cgatcgccga ctcgaccgat ccgatgatcg tggtcgcgcg tgagatcgat
     4561 gcgaaagctc gcgagttgcg caagcggttc gagagtgaag tgatcggtgt cgaacgtgcg
     4621 aactacgcaa agatcgcgcg ggcgttgttc gagactgaag gcacgaacct ttatcccgac
     4681 gcgacgttca cgctgcgcct gtcgtacggc acggtcgcgg gctacatgga aaacggcaag
     4741 aaggtgccgc cgttcaccac gctcggtgga ttgtttgcac gttccgagca gttcaaacgg
     4801 cagttcccct acaacctgcc gcagcgctgg tacgacaaga agccggcgct ggatctgaac
     4861 acgccgttca acttcgttac gacgaacgac atcatcggcg gtaactccgg ttcgccgacg
     4921 atcaaccaga acggtgaatt ggttggtctg atcttcgacg gcaacattca gtcgctggtc
     4981 ggcgacttca tgtacgacgg atcggtgaat cgtgcgatct cggttgattc gcgaggtatg
     5041 ttggaggtgc tgaagaaggt cttcaacgcg aatgaggttg cggcagaatt aaccggcgcg
     5101 gcggccagca cgaaagctgc tggccgttaa gccttttcga ggcccgcgta cttttcaacg
     5161 agtttcttct ggccatagcc ggggaagctc accgtcaact tggtcgattc tccggcgccc
     5221 tcacgccgga gaacgagacc acgaccatac ttcgaatgct tcacataaga acccggcaca
     5281 aactcgcctg agttcgcagc gggcgcggct ttcggcgcgg gagcgcttcg ttgctgtcct
     5341 tttgcaggga cttcacccaa ctgccggctg cgttgcttga aaaactccgc gatcgaatcg
     5401 acgctgtcgt aagtcttgcc catatacttc ttcttctctt ttcggtactc accctgttcg
     5461 taatcgatcg ccgacgaacc acgcgcaaac gacaaccacg acttgccgag actgagatct
     5521 tccagcatgt cgatcggcat ctcgtttaaa aactgcgacg gttcggaagc gagctcttcg
     5581 ccgtaaacgc gacgcttcat agcgtgtgtg acgtaaagaa aacgttccgc gcgcgtcatc
     5641 gcgacgtaa
//
LOCUS       DASWTX010001231         3495 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_235778, whole genome shotgun sequence.
ACCESSION   DASWTX010001231 DASWTX010000000
VERSION     DASWTX010001231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3495)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3495)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3495
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235778"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..536)
                     /locus_tag="VGD38_18715"
     CDS             complement(<1..536)
                     /locus_tag="VGD38_18715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730126.1"
                     /translation="MNKRLIFVAALVLIASAAFLLLVASPNVATTSAPNQFVRQRGGR
                     FVVGNRPFRFVGANVAVMYRDDDRARMPETLRQAAQVGIKVVRVWAFGEGGPNDVKPM
                     ADFADWPRHNSFRLAPGQWNEDAFVHLDRVIAEAAKNNIYVQLCLTNWWRDTGGVTQY
                     LRWAGINDAADDSYKFGI"
     gene            complement(562..921)
                     /locus_tag="VGD38_18720"
     CDS             complement(562..921)
                     /locus_tag="VGD38_18720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730127.1"
                     /translation="MFLTLMLLQQLRATQPNYFFLVTLLLLIAGGVAWLIAAVLGFAR
                     SPAFGPSARWFSYAAVCLIIYHLHFLLFGVFVFLGMNQNSADLTMALGVGAFFNLFVV
                     LGAVCAIMGFVRMTSPR"
     gene            complement(1139..1354)
                     /locus_tag="VGD38_18725"
     CDS             complement(1139..1354)
                     /locus_tag="VGD38_18725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730128.1"
                     /translation="MKSLKDILAVVVGILSALGAIYYFYTFVTEPAGAGHTSGWIALG
                     LAIVAFVCGLIYFLGHVNKEEEIHITQ"
     gene            complement(1431..3383)
                     /gene="selB"
                     /locus_tag="VGD38_18730"
     CDS             complement(1431..3383)
                     /gene="selB"
                     /locus_tag="VGD38_18730"
                     /inference="COORDINATES: protein motif:HMM:TIGR00475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0001514 - selenocysteine incorporation
                     [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HEY0730129.1"
                     /translation="MKSIIVGTAGHIDHGKSALVRALTGTDPDRLPEEKRRGITIDLG
                     FADLELNGFRFGFVDVPGHERFVKNMLAGAHGIDLLALVIAADEGVMPQTREHFDICR
                     LLGVQNGLVVITKKDLVEEEMLPLVEDEARALVAGSFLEGAPIVSVSSKTGDGFEGLK
                     SLLTQTAERVPPRSADFTTRLPIDRAFSMKGFGTVVTGTLISGQIAEGDELELLPAGL
                     KVRVRGLQVHGHAVKQAHAGQRTAVNLAGIGTAQIERGMVLGAPGRLRPTQIIDVWVD
                     VLPGVARPVRSRSRVRFHIGAAEVLGRVTVLEGTSEIPAGEGALAQIRLEAPVVALHD
                     DRFILRSYSPADTIGGGKIVNAFAPKHRRKDVAGTVQILRSLMNTERATKLAAFVRVA
                     AKHGVRFSDLAAATGWTDQVLTQAASDAAKQEAVIDSSGVYLSNESFAQLSANVVAEL
                     EQHHKREPLARGMLRETLREKLFAHSLPELFGAVISRLEASGEVVAEKDVIRSSGHKI
                     GLSDKDAELSDKIEKLYLDAGVEAPSLDEAMVRAGVPATQRTQARKILQLLLDSGKLV
                     RVQGDMFMHPQIIEGLKTKLQTYAAQHEPDRLIDVPTFKTLAGVSRKYAIPLLEYFDR
                     EHFTRRAGDKRVILKTSGLHSPAPRR"
BASE COUNT          811 a         1075 c          922 g          687 t
ORIGIN      
        1 ttgatgccaa acttgtaact atcgtcggcg gcatcgttga tacccgccca gcgcaaatac
       61 tgcgtgacgc cgccggtgtc gcgccaccag ttagtcaaac aaagctgcac gtagatattg
      121 ttcttcgcgg cctcggcgat cacgcgatcg agatgcacaa acgcatcttc gttccactgt
      181 cccggcgcaa ggcgaaacga attatggcgg ggccagtcgg cgaaatcggc catcggcttg
      241 acgtcgttcg gaccgccctc gccaaacgcc cacacacgca cgactttgat tcccacctgc
      301 gcagcctgac gaagcgtttc gggcatacgc gcccgatcgt cgtcgcgata catcacggcg
      361 acgttcgcgc cgacaaaccg aaacggacga ttgccgacaa caaagcgtcc gccacgctgc
      421 cgcacaaact ggtttggcgc ggaagtcgtc gccacattcg gcgacgccac cagtaacaga
      481 aaggccgcgc ttgcaatcag cacaagcgcg gcgacaaaaa ttagtctttt attcatcaag
      541 gcctatcaaa tccgagcgat tctatcgcgg gctggtcatg cgcacaaacc ccataatcgc
      601 gcagaccgca ccaagcacca caaacagatt aaaaaacgct ccgactccca acgccatcgt
      661 caggtccgcc gagttctggt tcatacccag aaacacaaac actccaaaca gcagaaagtg
      721 aaggtgatag ataatcaagc aaaccgcggc gtaagaaaac cagcgcgctg agggcccgaa
      781 cgcgggcgac cgcgcaaaac cgagcactgc cgcgatcaac caggcgacac cgccggcgat
      841 caacaagagc aatgtgacaa ggaagaagta gtttggctgc gtggcccgaa gctgctgtaa
      901 gagcatcaag gttaaaaaca ttgacgtcga gattctcctt tgcggttaaa gattcacatc
      961 gccaataacc aaaaaaccaa ttcgaaacca tgaggcgcaa aaaacaagcg ccgtctgcgc
     1021 acttgagccg ctttggtatg tgcacaaacg gcgtccaatt ggtgtcggtt accaagcgca
     1081 agtttctacg gtggaaggca tttttgtggc ttccaaccgg ctttcggcta gcgctcgcct
     1141 actgcgttat gtggatctcc tcttctttat taacgtggcc gaggaagtaa atcaggccac
     1201 aaacgaaggc aactattgcc aaaccgagcg cgatccatcc ggacgtgtgg ccagcgccag
     1261 ccggctcagt cacgaatgtg taaaagtaat agatcgcgcc gagggctgac agaatgccca
     1321 cgaccaccgc gagtatgtcc ttcaggcttt tcattttgaa cctccggcca ggtattgaat
     1381 atgaaggtta aggaaaaagc cgcttagttg cgctatatga tggacgcatg ttaacgccgt
     1441 ggtgcaggtg aatgcaagcc tgaggttttg aggatcacgc gcttgtcgcc cgcgcggcga
     1501 gtgaagtgtt cgcggtcgaa atattcgagc agaggaatgg cgtactttcg tgagacaccg
     1561 gccagtgttt tgaacgtcgg aacgtcgata agacggtcgg gttcgtgttg agcggcgtag
     1621 gtttgaagct ttgttttcag accttcgatg atttgcggat gcatgaacat gtcgccctgg
     1681 acgcgcacca gttttccact gtcgagcagc agttgcagaa tcttgcgggc ctgagtgcgc
     1741 tgggtcgccg ggactccggc gcgcaccatc gcttcgtcga gtgagggggc ttccacgccg
     1801 gcgtcgagat acagcttctc gatcttgtcg ctaagttcgg cgtccttgtc gctcaaacca
     1861 atcttgtggc cgctcgaacg tatcacgtcc ttctcggcta caacttcgcc actggcttcc
     1921 aaccggctaa tcaccgcgcc gaacagttcc ggtaacgagt gtgcaaacag tttctcgcgc
     1981 aaggtctcgc gcaacatgcc gcgcgcgagt ggttcgcgtt tgtgatgctg ttccaactcg
     2041 gcaacaacgt tagcgctgag ctgcgcgaaa ctctcgttcg acaagtaaac accgctcgaa
     2101 tcaatcactg cttcctgttt cgcagcgtca ctcgccgcct gcgttaaaac ctgatcggtc
     2161 caaccagtcg cggccgcgag atcggagaac ctgacgccgt gtttcgcggc cacccggaca
     2221 aacgccgcga gcttcgtcgc tcgttccgtg ttcatcagcg agcgaagtat ctgcactgtc
     2281 ccggcgacgt ctttccgacg atgcttcggc gcgaacgcat ttacgatctt gccgccgcca
     2341 atcgtgtcag ccggtgaata actgcggaga atgaaacgat cgtcatgcag cgctaccacg
     2401 ggcgcttcga gccgaatctg tgccagcgcg ccctcgcctg ccggaatctc cgacgtgccc
     2461 tcgagcacgg taacgcgtcc taaaacttcc gcggcgccga tgtgaaaacg aacgcgcgag
     2521 cgcgaacgca cgggacgcgc tacaccgggc aacacgtcaa cccaaacgtc gatgatctgc
     2581 gtcggacgca aacgtcccgg cgctcccaaa accatgccac gctcgatctg cgcggtaccg
     2641 ataccggcga gattaaccgc cgttcgttgt cccgcatgcg cctgtttcac tgcgtgcccg
     2701 tgcacctgca aaccacgcac acgcactttc aaacccgcag gcaaaagctc gagctcatca
     2761 ccttcagcga tctgacccga aatgagcgtg ccggtaacca cagtgccgaa acccttcatc
     2821 gaaaacgcgc gatcgatcgg cagacgcgtc gtgaagtctg cggaacgcgg cggcactcgc
     2881 tcagcggtct gcgtcagcag cgacttcagt ccctcaaacc cgtctcccgt cttcgaactg
     2941 accgaaacga tcggcgcgcc ttccaaaaac gatcccgcaa ccagcgcccg cgcttcgtct
     3001 tccacgagcg gcagcatctc ttcttcaacc agatctttct tcgtgattac gacgaggccg
     3061 ttctgcacgc cgagcagacg gcaaatatca aaatgctcgc gcgtctgcgg catcacgcct
     3121 tcatccgcgg ctatcaccaa cgcgagcaga tcgatcccat gcgcgcccgc gagcatgttc
     3181 ttgacgaaac gctcgtgacc gggaacatcg acaaagccga acctgaagcc gttcagctcc
     3241 agatcggcga aaccgagatc gatcgtgatc ccgcgacgct tttcttcagg aaggcgatcc
     3301 ggatcagtgc cggtgagggc tctgacgagt gcgctttttc cgtgatcgat atgaccagcc
     3361 gtgccgacga ttattgattt cactgcacaa tctcaaaatc catccactgc gaggcaacac
     3421 gatgcttttc tttcgcgagc cgatccgaaa cgacgatctg taaaacgtac tcgccgggtg
     3481 tcagactcgt gccca
//
LOCUS       DASWTX010001232         3115 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_427385, whole genome shotgun sequence.
ACCESSION   DASWTX010001232 DASWTX010000000
VERSION     DASWTX010001232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3115
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427385"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1690
                     /locus_tag="VGD38_18735"
     CDS             <1..1690
                     /locus_tag="VGD38_18735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730130.1"
                     /translation="NSDALTRADRAYQIAAANFYSENFDEAHKRFQSISNDSASPWRN
                     NSTYLVARTLARKGSIGPPEQKQESLSAAEAQLRKILSDKNLSSLHAASTRLLNLVRL
                     RAHPEERLNELAHTLTTKPNNPNLKQHLWDYTALLDTYLERDEEDTTTAPPIPKGEDL
                     SDWIATFQDASEAAKNHAVERWQATRSQPWLIAALSLTDGKHPKANDLLAEALKVNSR
                     SAAFASARFHAVRLLMETGKNTEARTLLDQTLKTERAHFDESALNLLAGKRMLLANSL
                     DEFLGDAARVPAALSWNDDGRELPIEDAEISDETKTQLGKPFFDVDAAKAFNQQFPLS
                     VLKEAATSTVLPAGPRRDLVQAAWLRAALLGDTRTADELTPIVSSLVPESAPLLNAYL
                     SSAQPDEKKFTAIYAWLKTPGLEPVVDAGVARHGPLTQQDSYRDNWWCSASFVTVVPE
                     ENRQYVQFTMTTNNPPPRFLSPAEVERGAKEWASLSALGAAPNYIIRQVIQWANTHPA
                     DPRVPEALHLAVRTTRYGCTDKDSPRWSKAAFDVLHRKYPNNPWTKKTPYWFKD"
     gene            1711..>3115
                     /locus_tag="VGD38_18740"
     CDS             1711..>3115
                     /locus_tag="VGD38_18740"
                     /inference="COORDINATES: protein motif:HMM:NF015168.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HEY0730131.1"
                     /translation="MEQAEHTNHLINESSPYLLQHAHNPVDWYPWGEEAFAKARSENK
                     PVLLSVGYSACHWCHVMAHESFEDEDIAQLMNELFVNIKVDREERPDLDQIYMNAVQM
                     MTHHGGWPMTVFLTPDGVPFYGGTYFPPQDRYNMPGFPRVLISVAEAYRDRKDDIIET
                     GTSLLRELRRLSESSASDNPVDKELLDVAYAGMVRSYDSTNGGFGGAPKFPPAMSLEF
                     LLRTYKRTGNREALEMVRHTAEKMAHGGMYDQLGGGFHRYSTDAKWLVPHFEKMLYDN
                     ALLSRFYLHYFQVTQEPLARETAEGILDYVLREMTDPAGGFYSTQDADSEGHEGKFFV
                     WDLDEITSVLGEDATAFNSYYNVTAGGNFEGKNILNVNPSSPRPKPESRQRLFEFRET
                     RIKPDRDEKIITAWNGLMLASFAEAGVILNRPDYTEAARRNAEFVVTNLARNDFLLRT
                     YKDGVAKFNAYLEDYAFF"
BASE COUNT          734 a          949 c          846 g          586 t
ORIGIN      
        1 gaactccgac gcccttacgc gcgccgatcg cgcttatcag atcgccgcag ccaatttcta
       61 ctccgaaaat ttcgacgagg cccacaagcg cttccaatca atttcaaatg atagcgcctc
      121 accctggcga aacaattcca cctacctggt cgctcgcaca ctcgcgcgca aaggcagcat
      181 cggtccgccc gaacaaaagc aggaatcgct gagcgccgcg gaagcacaac tgcgaaaaat
      241 tctcagcgac aaaaacctga gttcgctgca tgcagcttca acgcgtctgc tcaatctcgt
      301 tcgcctgcgc gcgcatccgg aagagcgtct caacgagttg gcccacacgc tcacgacgaa
      361 gccaaacaac ccgaatttga aacagcacct ttgggactat accgcgctgc tcgacaccta
      421 cctcgaaagg gatgaagagg acacgacgac cgcgccgccg atcccaaagg gggaggatct
      481 ttcggattgg atcgcaacgt ttcaggatgc gagtgaggcc gcgaagaacc atgcggtcga
      541 acgttggcaa gcgactcgtt cgcagccgtg gctgatcgcg gccttatcgc tcactgatgg
      601 caagcatccg aaggcgaatg atctgttagc ggaagcgttg aaagtaaaca gccgctcagc
      661 cgcctttgct tccgcgcgtt ttcacgcagt tcgattgctc atggagacag gcaagaacac
      721 cgaagcccgc acgctgctgg accaaacgtt gaaaaccgag cgcgcgcatt tcgacgaatc
      781 agcgttgaac ctgctcgccg gcaaacgaat gctgctcgcc aattctctcg acgagttttt
      841 gggcgacgcc gcgcgcgtgc ccgcagcatt gagttggaac gatgatggac gcgagcttcc
      901 gatcgaagac gcagagatct ctgacgaaac aaagacccag ctcggaaagc cgttcttcga
      961 cgttgacgcg gccaaggcgt tcaaccagca gttcccactc tccgtgctca aagaggccgc
     1021 tacgagcacc gtactgccgg ctggaccacg acgcgatctg gtgcaggccg catggttgcg
     1081 agcagcgttg ctcggcgaca cccggaccgc ggacgagtta acgccgattg tcagcagtct
     1141 cgttcccgaa agcgcgccgc tgctgaacgc gtacctttcc agcgcgcaac cagacgaaaa
     1201 gaagttcact gcgatctacg cgtggctgaa gacgccgggg ctcgagcctg tcgtcgacgc
     1261 cggggttgcc cgccatggtc cactgactca gcaggactcc tatcgcgata actggtggtg
     1321 ctcggcgtcg ttcgtcactg tcgttcctga agagaatcgc cagtacgtcc aattcactat
     1381 gacgacaaac aatccaccgc cgcgttttct ttctccggcc gaggtggaac gcggtgcgaa
     1441 agaatgggcg tcgttgagcg cgctcggtgc cgcgcccaac tacatcatcc ggcaagtgat
     1501 tcaatgggcc aacacgcacc cggccgatcc gcgtgtgcct gaagcgctcc atctcgcggt
     1561 aagaaccacg cgttacggct gcaccgacaa ggacagcccg cgctggtcca aggcagcgtt
     1621 cgacgtgctg catcgcaagt acccaaacaa tccctggacg aaaaagacgc cctattggtt
     1681 caaagactaa ctaaagcaag caggtctcaa atggaacaag cggaacacac gaatcatctg
     1741 atcaacgaaa gcagtcctta cttacttcag catgcgcaca acccggtcga ctggtatccg
     1801 tggggcgaag aggcgtttgc aaaagcgcgc agcgaaaaca agcccgtgct gttgagcgtc
     1861 ggctattccg cttgtcactg gtgtcacgtg atggcccatg agtcgttcga ggacgaagac
     1921 atcgcgcaac tcatgaacga gctcttcgtg aacatcaaag tcgatcgcga agagcgcccg
     1981 gatctcgatc agatttacat gaacgccgtc cagatgatga cgcaccatgg tggttggccc
     2041 atgacggtct ttctcacgcc tgacggcgtg ccgttttacg gcggcacgta tttcccgccg
     2101 caggaccgtt acaacatgcc gggttttccg cgcgtgctga tcagcgtcgc ggaagcgtat
     2161 cgcgatcgta aagacgacat catcgaaacg ggaacgtcac tgttgcgaga actgcgccgg
     2221 ttaagtgaat ccagcgcttc cgataatccc gttgacaagg aactgctcga cgttgcgtac
     2281 gccggcatgg tccgaagtta cgactcgaca aacggcggct tcggtggcgc gccgaagttt
     2341 ccgcctgcga tgtctctcga attcttactg cggacataca aacgcaccgg gaacagagaa
     2401 gcgctcgaga tggtgcgaca cacggcggaa aagatggccc acggcggcat gtacgatcag
     2461 ctcggcggcg gctttcatcg ttactcgaca gacgcgaagt ggctcgtccc gcatttcgaa
     2521 aaaatgcttt acgacaatgc cctgctctcg cgtttctacc tgcactactt ccaggtcaca
     2581 caggagccgc tagcgcgcga gaccgccgaa ggcattctcg attacgtgct ccgtgagatg
     2641 accgatcccg ccggtggctt ctattcaacc caggacgccg attcagaggg acacgaaggc
     2701 aagttctttg tttgggatct ggatgaaatc acctccgttc tcggcgaaga cgctacggca
     2761 ttcaattcct attacaacgt caccgcaggc ggcaactttg aaggcaagaa cattctcaac
     2821 gtcaacccct cttcgccaag acctaaaccc gaaagccggc aaaggctttt cgagttccgc
     2881 gagacgcgga tcaaacccga tcgcgacgaa aagatcatca ccgcctggaa cggcctgatg
     2941 ctcgcgagct tcgccgaagc cggcgtgatc ctgaaccgtc ccgactacac cgaagccgcc
     3001 cggcgaaacg cggaatttgt cgtaaccaat ctggctcgca atgattttct gctgcggacg
     3061 tacaaagacg gcgtcgcgaa attcaacgcg taccttgagg actacgcttt cttca
//
LOCUS       DASWTX010001233         2888 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_82247, whole genome shotgun sequence.
ACCESSION   DASWTX010001233 DASWTX010000000
VERSION     DASWTX010001233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2888)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2888)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2888
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82247"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(153..563)
                     /locus_tag="VGD38_18745"
     CDS             complement(153..563)
                     /locus_tag="VGD38_18745"
                     /inference="COORDINATES: protein motif:HMM:NF021221.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4870 domain-containing protein"
                     /protein_id="HEY0730132.1"
                     /translation="MQNPPPVQTTKSSTGLDENIAALLSYIFGWISGLIFFLMEKDSR
                     LVRFHAMQSILFNVLIFVLVFVFWILTFVLVLVGAAIGDAFGAIFSLLATLLWLVFSV
                     GILIAWILCLVKAFQSQYFKLPVIGNFAEKFSAK"
     gene            716..961
                     /gene="purS"
                     /locus_tag="VGD38_18750"
     CDS             716..961
                     /gene="purS"
                     /locus_tag="VGD38_18750"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEY0730133.1"
                     /translation="MKAKVYVNLKPGVLDPQGKAIQHSVELLGFSGISDVRQGKFFEI
                     ALDDSVDSQHAREAVEKMAREVLSNPIIEDYRVEIEA"
     gene            958..1656
                     /gene="purQ"
                     /locus_tag="VGD38_18755"
     CDS             958..1656
                     /gene="purQ"
                     /locus_tag="VGD38_18755"
                     /inference="COORDINATES: protein motif:HMM:NF002957.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HEY0730134.1"
                     /translation="MKFGVIVFPGSNCDHDAYHVISKHVGQPVDFIWHRETDLSTYDA
                     VIIPGGFSYGDYLRAGALARFSPVMNSVKKFAESGRFVLGICNGFQILAEAGLLPGAL
                     IRNRDLHFICEHVYVRVETSDSPFTNEMQRGSVLRIPIAHAEGNYVCDDATLAELQRE
                     DRIVFRYCEKDGSITDAANPNGSRDNIAGICNRERNVLGLMPHPERACEDLLGSSDGR
                     DIFRSLAATLAAAV"
     gene            1665..2375
                     /locus_tag="VGD38_18760"
     CDS             1665..2375
                     /locus_tag="VGD38_18760"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HEY0730135.1"
                     /translation="MKRILPFLIILVVLGVAIGSAVYLTRVTPGTPTAPAPASQSTAN
                     NPQSRPAPIRGVPGAEPAQTLGAANAPVQLEEFGDYQCPPCGAFHPVLEKMHEEFGDK
                     LRITFRNFPLTQSHPHAIAAASSAEAAGLQGKFWAMHDLIYEHQAEWKDRMDVGPIFE
                     GYAKQIGLNIERWKKDVGSEQIAQRIFLDSRRGQTMGVRGTPTVFINGREVPFESLLA
                     PDRLRAVIQSELAASGSR"
     gene            2375..2806
                     /locus_tag="VGD38_18765"
     CDS             2375..2806
                     /locus_tag="VGD38_18765"
                     /inference="COORDINATES: protein motif:HMM:NF019499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin K epoxide reductase family protein"
                     /protein_id="HEY0730136.1"
                     /translation="MKRYIAAAIVSLIGLADAIYLTVEHVTGQSVRCTIVAGCSEVLS
                     SQYAVVAGVPLAAIGAAAYFTVFSLATLAAFGYRVAGMLLTVVVSLMFVFSLWLIYLQ
                     AFVIHAFCQFCLLSAAVTTALTVLALSAHRGARLSQTPGSV"
BASE COUNT          647 a          788 c          820 g          633 t
ORIGIN      
        1 gatgagagtc tgggacgagg atcgcgactt tcacgacctc gtgaaagccg atcccgatat
       61 tacgtcgcgc ttgtcggccg ccgagatcga tcgcacgttc tcgctggatc attacctgcg
      121 gaacgtggat cagatcttca aacgactggg aattacttag ccgagaactt ttcggcgaag
      181 ttgccgatga ccggcagctt gaagtattgg ctctgaaacg ctttgaccag gcacaggatc
      241 cacgcgatca gaatgccgac tgagaagact aaccagagca gcgtagcgag caggctgaag
      301 atcgcgccaa aagcatcgcc gatcgccgcg ccgactaaca ccagaacaaa cgtcaggatc
      361 cagaacacga acaccaggac gaatatcaaa acgttaaaaa gaatcgactg cattgcatga
      421 aaccgcacga gccgactgtc tttttccatc aggaagaaaa tcagtcccga aatccaacca
      481 aagatgtaag acagcagtgc ggcaatgttt tcgtcgagcc cggtgcttga tttggtcgtt
      541 tgaacgggcg gcgggttttg cattataagt ttctccttgg ggacgtttag agccggagga
      601 tattaatcca gtaaacgctt cttaagcaac gttttattga gttctgagtt caagctttag
      661 cttgtctggc aaagacagcc taaaggctga actcaaaacg taagacaggg tgaagatgaa
      721 agccaaagtt tacgtaaatt tgaaacccgg agtgctcgat ccgcagggaa aagccatcca
      781 acactcggtc gagctgctcg gattttccgg gatctcggac gtgcggcagg gcaagttttt
      841 cgagatagct ctggacgact cggtcgacag ccaacacgcc cgcgaagcgg tagaaaaaat
      901 ggcgcgtgaa gtgttgtcga acccgataat tgaagactac cgcgtggaga tagaagcgtg
      961 aagtttggag taattgtttt tcccggttcg aactgcgacc acgatgccta ccacgtgatt
     1021 tcaaaacacg tgggtcagcc ggtggacttt atctggcatc gcgaaaccga tttgagcacg
     1081 tacgacgcgg tgatcattcc gggcgggttt tcctatggcg actacctgcg agccggagcg
     1141 ctcgcgcgct tttcgccggt gatgaactcg gtcaagaagt ttgccgaaag cgggcggttc
     1201 gtactcggaa tctgtaacgg ttttcaaatc cttgcggaag ccggactgct gccgggcgcg
     1261 ttgattcgca atcgcgacct gcatttcatc tgcgaacacg tttacgtgcg cgtcgaaacg
     1321 tcggacagtc cgttcaccaa tgaaatgcaa cgcggctcgg tgctgcgcat tcccattgct
     1381 cacgcggaag gcaattatgt ttgcgacgac gcgacgcttg cggagttgca acgcgaagat
     1441 cgcattgtct ttcgttactg cgaaaaggac ggatcgatca ccgacgcagc gaatccaaac
     1501 ggttcgcgtg ataacatcgc gggaatttgc aatcgcgaac gtaacgtcct ggggctgatg
     1561 ccgcatccgg aacgcgcttg cgaagacttg ctcgggtcca gtgacggacg cgatatcttt
     1621 cgttcgctcg cggctactct cgctgccgca gtctaaacct gaatatgaaa cgaatactgc
     1681 ctttcctaat cattctcgtg gtgctcggcg tcgctatcgg ttctgcggtg tacttgacgc
     1741 gcgtaacgcc cggcacgccc acggctccgg cgcccgcgtc gcaatcaacg gccaacaacc
     1801 cacagtcacg accggctccg atcagaggag ttccgggagc tgaaccggcg cagacactcg
     1861 gcgccgcgaa cgctccggtg caactcgaag agtttggcga ttaccagtgt ccaccgtgcg
     1921 gcgcgtttca tcccgtgctc gaaaagatgc acgaggagtt tggcgacaaa ctgcggatca
     1981 cgttccgcaa ctttccgctt acgcaatcgc acccgcacgc catcgccgct gcttcgtcag
     2041 ccgaagctgc gggactgcag ggcaagttct gggcaatgca cgatctgatt tacgaacatc
     2101 aggcggagtg gaaagacagg atggacgtcg gtccgatctt cgaaggctac gccaaacaga
     2161 tcggcctcaa tatcgagcgc tggaaaaagg acgtcggcag cgagcagatc gcgcaacgaa
     2221 tctttctcga cagcaggcgc ggtcagacga tgggcgttcg aggcacgccg acggttttta
     2281 tcaacggccg cgaagtgccg tttgaatcgc ttctcgcgcc tgacagactg cgagccgtaa
     2341 ttcagagtga actcgccgcc agcggaagcc ggtaatgaag cgttacatcg cggcggccat
     2401 tgtttcactc attggacttg ccgatgccat ttacctcacg gttgaacacg taaccggaca
     2461 aagtgttcgc tgcacgatcg tcgcgggctg ctcggaagtg ctgagcagcc agtacgccgt
     2521 tgtggccggt gtgccgttgg cggcgattgg cgccgcggct tatttcacgg ttttcagtct
     2581 cgcgacgctt gcggcttttg gttatcgcgt tgcgggaatg ctgttgacgg tggtcgtgtc
     2641 gctgatgttc gtcttcagcc tgtggctgat ctaccttcag gcgttcgtga ttcacgcctt
     2701 ttgtcagttt tgcctgctct ccgcggcggt cacaaccgcg ctgacagtcc tcgccttgtc
     2761 cgcgcaccga ggcgctcgcc tttcgcaaac gcccggttct gtgtaatctt tccgaaaaca
     2821 ccatggaaca atcgacagtc gctgacattt ttcgtcgcgc gcaggcgttg cgtcgcgaac
     2881 atgctgat
//
LOCUS       DASWTX010001234         2377 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_39292, whole genome shotgun sequence.
ACCESSION   DASWTX010001234 DASWTX010000000
VERSION     DASWTX010001234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2377)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2377)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2377
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39292"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1185)
                     /locus_tag="VGD38_18770"
     CDS             complement(<1..1185)
                     /locus_tag="VGD38_18770"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY0730137.1"
                     /translation="MKYCTTCKAKYDDSVSFCSIDGEVLEADPASIVDTVLDGQYQME
                     ALLGKGGMGAVYRARHILLGDRVAIKVLPPEVRTNAEWLRRFRREGQAARRFRHPNAV
                     TVYDLRTAADGTIYMVMEYVEGHTLDLAIKTRGRFSAAEAFEILTPIMSVLDTAHSMG
                     VVHRDLKPENIMIGSATENNAPVVKLLDLGIAKMREIAGDNGGNTALTMAGQVLGTPY
                     YMSPEQWGEIPRDGNPEIDGRADIYSLGLVFYEMITGRRPFAGNTLHELRREHVQTAP
                     KPLYQVAPDVPLGFSGAIERATAKDRGDRQSTASELANELRAGLTTAVQPHGDAPPAG
                     FAETVTIKKDLDTKSDVNAPTILTIDSAPTSPPSPPAASTAAPTVVERAKPEPAKPID
                     ASM"
     gene            complement(1253..>2377)
                     /gene="glgP"
                     /locus_tag="VGD38_18775"
     CDS             complement(1253..>2377)
                     /gene="glgP"
                     /locus_tag="VGD38_18775"
                     /inference="COORDINATES: protein motif:HMM:TIGR02094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucan family phosphorylase"
                     /protein_id="HEY0730138.1"
                     /translation="SEEEFLALGRVDAANKTERYGLTPFAIRMCRSTNGVSLKHGEVS
                     RALWQKLWPEKKVEEVPISYVTNGVHAPTWVSPLLRYLFEKYIGQDWEKKLRDTDAWT
                     EAVTRISDEELWIAHSLLKERLIAFVRHRTTQSRLAAGEKADYIEAAKTMFDSNALTI
                     GFARRVAGYKRWNLLLSDQQRLLKLINNEERPVQFVFAGKAHPQDEGSKLVLQQLAQW
                     KYDKAVRHRAVFLEDYDQEIARQLVQSVDVWMNVPRRPLEASGTSGEKVAMNGGLNLS
                     ILDGWWLEGYDGTNGFAIGSGFAPASSSEAPEVAVIDAADAESLYRTLEQDLVPLYYT
                     RDKSGLPRQWIAMMKHAIQTLAPKYNSNRMVEDYIHRIYE"
BASE COUNT          473 a          781 c          608 g          515 t
ORIGIN      
        1 catactcgca tcgatcggtt tcgccggctc cggctttgct cgttcaacaa cagtcggcgc
       61 tgctgtcgac gctgcaggcg gtgacggcgg cgacgttggc gcgctgtcga tcgtaagtat
      121 cgtcggcgca ttgacgtccg acttcgtatc gagatccttc ttgatcgtga ccgtttccgc
      181 aaaacccgcc ggcggcgcat cgccgtgcgg ctgaaccgcc gtcgtcaatc ccgcccgtaa
      241 ctcgttcgcc aactcactcg cagtggactg acgatcgcca cgatccttcg ccgtcgcgcg
      301 ttcgatcgcg ccgctgaaac caagcggcac atccggcgcc acctgataca gcggcttcgg
      361 cgcggtctgc acgtgttcgc gccgcagttc gtgcagtgtg ttacccgcaa acggacgccg
      421 gccggtgatc atttcgtaga acacgagacc aagactgtaa atatccgcgc ggccgtcgat
      481 ttccggattg ccgtcgcgcg ggatctcgcc ccactgctca ggcgacatgt aataaggagt
      541 gccgagcact tgccccgcca tcgtgagcgc ggtgttgccg ccgttgtcac cggcgatctc
      601 gcgcatcttc gcgatgccga ggtcgagcag tttcacgacc ggcgcattgt tttccgtcgc
      661 gctgccgatc atgatgtttt ccggtttcaa atcgcgatgc acgacgccca ttgaatgcgc
      721 ggtgtcgagc acgctcatga tcggagtcag aatctcaaac gcttccgcgg cgctaaaccg
      781 tccacgtgtc ttgatggcga gatcgagagt gtgtccctcg acatattcca tcaccatgta
      841 gatcgtgccg tcggcagcgg tgcgcagatc gtaaaccgtg acagcattgg gatgacggaa
      901 gcgccgcgcc gcctgccctt cgcgtctgaa cctgcgcagc cattccgcgt ttgtcctgac
      961 ttctggcggc aaaaccttga ttgccacgcg atcgccgagc aggatgtgac gcgcgcgata
     1021 gacggccccc atgccgccct ttccgagcag cgcctccatc tgatactgac cgtcgaggac
     1081 agtgtcgaca atcgacgcgg gatcagcctc aagcacctcg ccgtcgatcg aacagaagct
     1141 cacgctgtca tcgtattttg ctttgcaggt tgtgcaatat ttcatttcgg ggggagtagt
     1201 ctaatccaca gattacacag atatcaaaga attcgtgtca tctgtggtta agttactcgt
     1261 aaatgcggtg aatatagtcc tcaaccatcc ggttgctgtt gtatttcggt gcaagggtct
     1321 ggatcgcgtg cttcatcatc gcaatccatt gtcgtggaag gccgctcttg tcacgcgtgt
     1381 aatagagcgg cactaagtct tgttcgagcg ttcgataaag cgactcggca tcggccgcat
     1441 caatcactgc cacctccggc gcctcgctcg aactcgccgg cgcaaaacca cttccgatcg
     1501 caaagccgtt cgtgccgtcg taaccctcca gccaccagcc gtcgagtatc gacaggttca
     1561 acccgccgtt catcgccact ttttcaccgc tcgttcccga cgcctcgagc ggccggcgcg
     1621 gcacgttcat ccacacgtca accgactgca ccaactgtcg cgcaatctcc tgatcgtagt
     1681 cctcaagaaa aactgcacga tgtctcacgg ccttgtcata tttccattgg gccaactgct
     1741 gcaacacgag cttcgaaccc tcgtcctgcg gatgcgcctt gccggcaaag acaaactgca
     1801 ccggccgctc ctcgttatta atcaacttca acagacgctg ctggtcggac agcaacaggt
     1861 tccaacgctt gtaacccgcg acacgccgcg cgaagccgat cgtcagcgcg tttgaatcaa
     1921 acatcgtctt cgcggcttcg atgtagtcag ccttttcacc cgccgcaagc cgcgactgcg
     1981 tcgtacgatg acgaacaaaa gcgatcagcc gctccttcaa caacgaatgc gcgatccata
     2041 gctcctcatc cgaaatgcgc gtcaccgcct cagtccacgc gtccgtatcg cgcagtttct
     2101 tttcccaatc ctgtccgatg tacttctcaa acaaataccg caacaacggc gaaacccacg
     2161 tcggcgcatg cacgccattc gtgacgtaac tgatcggcac ctcttcgacc ttcttctccg
     2221 gccaaagctt ctgccacagc gcacgcgaca cctcgccgtg tttcagactc acgccgttcg
     2281 tcgagcgaca catacgaatt gcgaacggcg tcaatccgta acgctcggtc ttattcgcag
     2341 catcaacccg gcccagcgcg agaaactcct cttcact
//
LOCUS       DASWTX010001235         3528 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_14979, whole genome shotgun sequence.
ACCESSION   DASWTX010001235 DASWTX010000000
VERSION     DASWTX010001235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3528
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14979"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1667)
                     /locus_tag="VGD38_18780"
     CDS             complement(<1..1667)
                     /locus_tag="VGD38_18780"
                     /inference="COORDINATES: protein motif:HMM:NF014826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HEY0730139.1"
                     /translation="MPEQKPQLDKFGIAAALQEIAQLMDMRGGQYRFKAKAYNAGARS
                     IQAVGDLDRLVREDQLTTVPRIGSALASQIKQLYLTGESSVLNELRAEFPPGIVQLSA
                     VPGLSLAKIKQLHDELGIASVEQLKAAAEAGQLRDLKGFGAKTEQRLLEQLNKPKEKP
                     RQRLHLHHAWNTAEQVIEYMQTNRGLVDISVAGSLRRWVETIDVIEIVASGKKPEALV
                     EHFLRLPLIISSQANGENSCVAQLADSAVVSFTAVTPAEYPVLLFSRTGNEAHVEKVS
                     ARIMSQKKRATRMPRNEAELYDRAGMQYVPPELREDQGEIEAALDGKLPEDLLTLGDI
                     KGMVHCHTTYSDGKHTLEQMVRAAEEMGMKYITITDHSPTAFYAGGLKAEDLYRQWDE
                     IDELQSAVKIKILRGTESDILADGGLDYPDRILEQLDCIVASVHARYKMDARKMTERI
                     VTAMRQPVFKIWGHALGRLLERRPPFECDVERILDVIAESQAAIEINGDPYRLDLEPR
                     WVREARKRKIKFVISVDAHSMGALNNLKFGVAMARRGWVTKREVLNT"
     gene            1688..3082
                     /locus_tag="VGD38_18785"
     CDS             1688..3082
                     /locus_tag="VGD38_18785"
                     /inference="COORDINATES: protein motif:HMM:NF006915.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+]
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent succinic semialdehyde
                     dehydrogenase"
                     /protein_id="HEY0730140.1"
                     /translation="MAITTINPTTGQTVKTFEELSAQHLEEKLQLSAATFQTYRHTPF
                     TDRARYMNAAAEILENEKHELGRLMTIEMGKPLKAAISETEKCAWVCRYYAENAEQHL
                     ADHVVQTNAKKSYVRFQPLGPVLAVMPWNFPFWQVFRFAAPALMAGNVGLLKHASNVP
                     QCALAIEEIFRRAGFPEGAFQTLLIGPDKVEDVLKDPRVVAATLTGSEPAGSSVASIA
                     GKHIKKTVLELGGSDPFIVMPSANIKEAITTAVKARTINNGQSCIAAKRFIVAAEIYD
                     NFEKGFVDEMKALRVGDPLEEETEIGPLATPQIVNDLEKQVQQAVAEGARILTGGKRV
                     NRPGNFYEPTVLVDVDPSTPVSCEEIFGPVAMLFRVNNIDEAIRIANATPFGLGSAAW
                     TNDATEQERFVNELEAGSVFINGMVASDPRLPFGGVKHSGYGRELAEFGIREFVNIKT
                     VWVGESKAATDETE"
     gene            3235..>3528
                     /locus_tag="VGD38_18790"
     CDS             3235..>3528
                     /locus_tag="VGD38_18790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730141.1"
                     /translation="MNYPFADLDLARRLERTEAVSNAGFVEARAEAFPDVGAKWIEVA
                     GAYAMFDGPGSPVTQTFGLGMFEPFTAEHFDQLEQFFFERGADTFHEVCPLADP"
BASE COUNT          740 a         1020 c         1006 g          762 t
ORIGIN      
        1 aacgtgttca gcacctcgcg tttggtgacc caaccgcggc gcgccatcgc gacgccgaat
       61 ttcaggttgt tcaacgcgcc catcgagtgc gcgtcgaccg agatcacaaa cttgatcttt
      121 cgcttgcgcg cctcacgcac ccaacgcggt tcgagatcga ggcgataagg atcgccgttg
      181 atctcgatcg cggcttgtga ctccgcaatc acgtcgagga tgcgctcgac gtcgcattca
      241 aacggcggcc ggcgttcgag gagccgtcca agcgcgtgtc cccagatttt gaaaaccggc
      301 tggcgcatag cggtgacgat gcgttccgtc atcttgcgcg cgtccatctt gtagcgcgca
      361 tgcacgctcg cgacgatgca atcaagctgc tccaaaatcc ggtccggata atcgagacct
      421 ccatccgcga gaatgtctga ttccgtcccg cgcaggatct tgatcttcac ggcgctttgc
      481 agttcgtcga tctcgtccca ctgtcgatac aaatcctcgg ccttcaaccc accggcataa
      541 aacgcggtcg gcgaatggtc cgtgatcgtg atgtacttca tgcccatctc ttcagcggcg
      601 cgcaccatct gttcgagcgt gtgcttgccg tcggagtagg tcgtgtgaca atggaccatg
      661 cctttgatgt cgccgagcgt caacagatct tccggcagtt ttccgtcgag cgcggcttcg
      721 atctcgccct ggtcttcacg caattcgggc ggcacgtact gcatacccgc gcggtcgtaa
      781 agctccgctt cgttgcgcgg catccgcgtc gcgcgcttct tctggctcat gatacgagcg
      841 ctgactttct cgacgtgcgc ttcgttgccg gtgcgtgaaa acagcagcac cggatactcc
      901 gcgggcgtca cggccgtaaa cgacacgacc gcgctgtcgg cgagttgcgc cacacaactg
      961 ttttcgccgt tcgcttgact cgaaatgatc agcggcagcc taagaaagtg ttcgaccagt
     1021 gcttccggct ttttgccgct cgcaacaatc tcgataacgt cgatcgtctc aacccagcgg
     1081 cgcaacgaac ccgcgacact gatgtcgacc agtccgcggt ttgtttgcat gtattcgatg
     1141 acttgttcag ccgtgttcca tgcgtgatgg agatgcaaac gctggcgagg cttttctttc
     1201 ggcttgttga gctgttcgag tagtcgttgc tcggtcttgg cgccgaagcc tttgagatcg
     1261 cgaagctgtc ctgcttccgc ggcggctttg agttgttcga cagaagctat cccgagctcg
     1321 tcgtgaagct gtttgatctt ggcgagactc agcccgggaa cagccgagag ctgcacgatt
     1381 cccggaggaa attctgcgcg cagctcattc agtaccgatg attcaccggt gagatagagc
     1441 tgtttgattt gcgacgcgag tgcgctgccg atgcgtggca ccgtggttaa ttgatcttca
     1501 cgaacgagcc gatccagatc gccgacagcc tgaatcgatc gcgctcccgc gttgtaggcc
     1561 ttcgccttga aacgatactg cccgccgcgc atgtccatga gctgcgcgat ctcctgcaac
     1621 gcagcggcga ttccaaactt gtcgagttgt ggtttttgct caggcatcga tctacactaa
     1681 cttaatcatg gcaatcacaa caatcaatcc tactaccggc caaactgtaa aaactttcga
     1741 ggaactctct gctcagcacc tcgaagaaaa actccagctc tcggctgcaa cgtttcaaac
     1801 ctaccggcac acaccattta ctgatcgcgc gcgatacatg aacgccgccg ccgagattct
     1861 cgagaacgaa aaacacgagc ttggccggtt gatgacgatc gagatgggca aaccgctcaa
     1921 agccgcgatc agcgaaacgg agaagtgcgc gtgggtctgc cgctactacg ccgaaaacgc
     1981 agaacaacac cttgcagatc acgttgtgca aacaaatgcg aagaaaagct acgtgcgctt
     2041 tcaaccgctc ggccccgtgc tcgcagtgat gccgtggaat tttccgttct ggcaggtatt
     2101 tcggttcgca gctcccgcgt tgatggccgg aaacgtgggt ttgctgaaac acgcttcaaa
     2161 cgtgccgcag tgcgcgctcg caatcgaaga aatctttcgc cgcgcaggtt tcccggaagg
     2221 cgcgtttcaa acgttgctga tcggccctga caaggtcgaa gacgttttga aagacccgcg
     2281 cgtggtcgcc gcgacgttga ccggcagcga acccgccggc agcagcgtcg ccagcatcgc
     2341 aggcaagcac ataaagaaga ctgtgctgga gctcggcggc agcgatccgt tcatcgtgat
     2401 gccgtcagct aatatcaaag aggcaataac aaccgctgta aaagcacgca cgatcaataa
     2461 cggacaatca tgcatcgcgg ccaagcgctt catcgtcgcc gctgagatct acgacaactt
     2521 cgagaaggga tttgtcgatg agatgaaagc gttgcgcgtg ggagatccgc tcgaagagga
     2581 aaccgagatc ggtccgctcg cgacgccgca aatcgtcaac gatctcgaaa agcaggttca
     2641 gcaagcggtg gcggaaggcg cgcgtatcct gaccggtggc aagcgcgtga atcgtcccgg
     2701 taacttttac gaaccaacag tgctcgtcga cgtcgatccc tcaactccag tttcgtgcga
     2761 agagatcttc ggtccggtcg cgatgctgtt tcgcgttaac aacatcgacg aagccatccg
     2821 tatcgccaac gcaacgccct tcggcctcgg ctccgccgcc tggaccaacg acgccaccga
     2881 acaagagcgc ttcgtcaacg agctcgaagc cggatcggtt ttcatcaacg gcatggtggc
     2941 ttccgatccg cgtctgccat tcggcggcgt gaagcattcc ggctacggcc gcgagctcgc
     3001 ggagttcggc atccgcgagt tcgtgaacat caagacggtg tgggttggtg agagcaaggc
     3061 ggccacggat gagacagaat aacttcgaat agcgccgcga gcgtttcgag tggcgcctgt
     3121 ttgcggtgca acgcggtgtc taagatagcc acaaagaggc acaagaagca taaaagagag
     3181 gcaacacaac ttgtgcctct tgtgcctatt tgtggttggt gatacaggag agacatgaac
     3241 tatccctttg cggatttgga tttggcgcgg cggttggagc ggacggaggc ggtctcgaat
     3301 gcggggtttg tcgaggcaag ggccgaggcg tttccggatg tcggtgcgaa gtggatcgag
     3361 gtggcgggtg cttatgccat gtttgatggt ccgggttcgc ccgtcacgca gacgtttggc
     3421 ttgggaatgt ttgagccgtt caccgctgaa cacttcgatc aactcgaaca gtttttcttc
     3481 gaacgcggcg ctgatacttt tcacgaagtc tgcccgcttg cggatcca
//
LOCUS       DASWTX010001236         1523 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_321814, whole genome shotgun sequence.
ACCESSION   DASWTX010001236 DASWTX010000000
VERSION     DASWTX010001236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321814"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1352)
                     /locus_tag="VGD38_18795"
     CDS             complement(<1..1352)
                     /locus_tag="VGD38_18795"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY0730142.1"
                     /translation="MSEQQALRLANDPRVEFVEEDGVVSAGTTQTGATWGLDRVDQRD
                     LPLDGNYNFTPTGTGVTAYILDTGIRATHTQFGGRVISGFTAINDGLGTNDGNGHGTH
                     VAGTVGGSTYGVAKNVTLVSVRVLDSSGSGSFSGVIAGVDFVTSNHQAGQPAVANMSL
                     GGGASSALDTAVVNSINDGVTYAIAAGNDGLDACNFSPARVPSAITVGATAMNDARSI
                     FQFGASNIGTCLDIFAPGSDITSSWITSDTATNTISGTSMATPHVAGVAALFLETNPS
                     ASPATVTAAIINNSTPNKVTNAGTGSPNRLLFSLLGGSPPPPPSCTFALSPTSAGFAG
                     VGGPATVTVMTQAGCNWTAVSNNSFITITSGASGSGTGTMTYTVAANTSTARSGSLTI
                     AGLTHSVSQDAGAPTCSFSINPTSASFAAAGGTASVTVTTQAGCNWTAVSNNPFITIT
                     S"
BASE COUNT          327 a          427 c          427 g          342 t
ORIGIN      
        1 gacgtgatcg tgatgaacgg gttgttgctc accgcggtcc aattacaacc agcctgcgta
       61 gtcaccgtca cacttgctgt tccacctgcg gccgcaaagc tcgcgctggt tggattaatt
      121 gagaaggaac aagtgggagc cccggcgtcc tgtgacacgc tgtgtgtcaa acccgcaatc
      181 gtcaatgaac cacttcttgc agtcgaggtg tttgcggcaa cagtgtaagt cattgtgccg
      241 gtacccgagc cactagcgcc ggacgtgatc gtgatgaacg agttgttgct caccgcggtc
      301 caattacaac cagcctgcgt catcactgtg acggtcgctg gtccacccac ccccgcaaag
      361 cctgcgctcg taggactgag tgcaaaggta caggagggcg gtggtggagg ggatcctcca
      421 agcaacgaaa acagtagccg gttgggcgaa cctgttcctg cattcgtcac cttgttcgga
      481 gtagagttgt taatgatcgc cgcagtaact gtcgccggcg aggcacttgg atttgtttcg
      541 aggaacaatg cagcaacacc cgcgacgtgc ggcgtcgcca tcgacgttcc tgagatcgtg
      601 tttgtcgctg tgtcgcttgt aatccatgat gatgtaatgt cgctgcccgg agcaaaaatg
      661 tcgaggcacg ttccgatgtt tgaggcgccg aactggaaga tggagcgcgc atcgttcatc
      721 gccgtcgccc ctacggttat tgcgctcggc acgcgagctg gagagaagtt acaggcgtcc
      781 aagccgtcgt ttcccgctgc tattgcatag gtcactccat cattgatcga gtttacgacc
      841 gcggtatcca acgccgatga agcgccgcca cccaaactca tgtttgctac tgccggctgg
      901 cccgcctggt ggttcgaagt aacaaaatcc acaccggcaa tgacgccaga aaagcttccg
      961 ctgccacttg aatcgagaac gcgaacggaa acgagcgtga cgtttttcgc tacgccataa
     1021 gttgaaccac caactgtgcc ggccacgtga gttccgtgac cattcccgtc attggtgccc
     1081 agaccatcgt tgatagctgt gaaaccggaa atcacgcgcc cgccgaattg tgtgtgtgtc
     1141 gcgcgaatgc cggtatcgag gatgtaggct gttacgccag tgccggtagg cgtgaagttg
     1201 taatttccat caagaggcag atcgcgctga tcgacgcgat caagtcccca cgtggcgcct
     1261 gtttgcgttg ttcctgcact gactacgcca tcctcttcga caaactcgac gcgcggatcg
     1321 tttgccagcc ggagagcttg ttgttcagac atgcgaacgg aaaaaccttt gatggcgtgc
     1381 cgataggtat gaccgccatt acgatctcca ccgaattcac gcgacaggcg aacagcttca
     1441 ccttcaacgt cccccacgtt gtggttgagt gccacgatgt attgattggg aattcgttta
     1501 tccgcgcgca tacgacggaa ttt
//
LOCUS       DASWTX010001237         3688 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_277966, whole genome shotgun sequence.
ACCESSION   DASWTX010001237 DASWTX010000000
VERSION     DASWTX010001237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3688
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277966"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..261)
                     /locus_tag="VGD38_18800"
     CDS             complement(<1..261)
                     /locus_tag="VGD38_18800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730143.1"
                     /translation="MNLFASLVDRALGRAPVLQRRRPGLFEPAGNAVLTTRDSSTDFL
                     REEQSFAEAESPAPRFAKVANTKPQDTRAKSHPSSSNTAATVT"
     gene            complement(272..991)
                     /locus_tag="VGD38_18805"
     CDS             complement(272..991)
                     /locus_tag="VGD38_18805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730144.1"
                     /translation="MSALNASNLLATWEQGTAQHPLERAIRLLHLAWPHKSAAEWARV
                     SVGERDRQLLRLREQLFGPKVEATTRCPKCGNELELTFTARDLESTVVEPQGDERLKL
                     VSGEYEIEYRLPNTADLLEIANDSGQALLDRCVIARRQDGPVQSTDLPAAVVEKLSSS
                     MADADPYAEIQIAMDCAGCSHRWSMVFDVVSYLWTEIEDWAERMIRDVHALASAYGWS
                     ERDIVGMSALRRRLYLELANA"
     gene            complement(1063..1587)
                     /locus_tag="VGD38_18810"
     CDS             complement(1063..1587)
                     /locus_tag="VGD38_18810"
                     /inference="COORDINATES: protein motif:HMM:TIGR02241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEY0730145.1"
                     /translation="MAQFTVNAQRFDPYKNFKFRVKWDAKYVAGVSKVSSLKRTTEVV
                     KHREGGDPSSSRKSPGRTEYEPITLERGVTHDKEFEQWANKVWNFGAGLGSEVSLQDF
                     RKDIIIEAYNEAGQLVIAYKVFRCWVSEFQALPDLDANANAVAIQHIKLENEGWVRDV
                     EVQEPSEPTFTEPA"
     gene            complement(1614..3155)
                     /locus_tag="VGD38_18815"
     CDS             complement(1614..3155)
                     /locus_tag="VGD38_18815"
                     /inference="COORDINATES: protein motif:HMM:NF016845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath C-terminal domain-containing
                     protein"
                     /protein_id="HEY0730146.1"
                     /translation="MPSALTYPGVYVEEIPSGVRTITGVATSVAAFIGAARRGPIEEP
                     TVVNSFGDYERIFGGLSIDSTMSYAVRDFYLNGGSQAIIVRLSNGAPATIGLPGGATL
                     VAANPGTWGERLRVRVSHHPSDANLFNLVIRDTGSGAEERFMNLSIDPNSPRRTDKVL
                     TQSSALVRVQGAAPAARPGPPHPPVASGDPFADNQPAGTYSQANPDGDEGAVLAEADY
                     LGDANAKTGVHALRKTDIFNLLCITPFTRTVDVSGAVLSAALALCVERRAMLIVDPPS
                     GWTSVANAITGINTFALSGQDARNAAIFFPRISQSDPLQDGLIENFVPCGAVAGVFAR
                     TDTQRGVWKAPAGLDASLNGVPALQISLTDPENGQLNPLGVNCLRSFGVAGRVIWGSR
                     TLRGADQLADEWKYIPVRRTALFIEESLFRGTKWVVFEPNDEPLWAQIRLNVGAFMHN
                     LFRQGAFQGSSPREAYFVKCDHETTTQNDINLGIVNIVVGFAPLKPAEFVVIKLQQMA
                     GQIEV"
     gene            complement(3216..3497)
                     /locus_tag="VGD38_18820"
     CDS             complement(3216..3497)
                     /locus_tag="VGD38_18820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730147.1"
                     /translation="MSIQSQQERKIARDILHYLQVHPHAKDTLDGIAQWWLLKEWTEC
                     KYFEIEASIAQLVSEGLVVERRRPGLPPYYWLNREKQDEIARILESNNH"
BASE COUNT          733 a         1098 c         1043 g          814 t
ORIGIN      
        1 cgtaactgtt gctgccgtgt ttgaacttga tggatgtgac tttgctcgcg tgtcttgcgg
       61 cttggtgttc gcaaccttcg caaatcgcgg cgcggggctt tccgcttctg caaacgactg
      121 ttcctcacgc agaaaatccg tcgagctgtc ccgcgtcgtc agcactgcat tccccgccgg
      181 ttcgaaaagg cccggccgcc gccgttgcaa caccggcgca cggcccaaag cacgatctac
      241 aaggctcgca aacaagttca tgattggcgt ctcacgcgtt tgccagttcc agataaagcc
      301 gcctgcgcaa cgcactcatt ccgacgatgt cgcgctcgct ccagccataa gcagaagcaa
      361 gcgcatgcac gtcgcgaatc atgcgttcag cccaatcctc gatttcagtc cacaggtacg
      421 aaacaacgtc gaacaccatg gaccaccgat gtgaacaacc agcacagtcc atcgcgatct
      481 gaatctctgc gtacggatca gcgtcagcca tgctgctgct caacttctcg actacggccg
      541 ccggcaaatc cgtcgactgc actggtccat cctgacgacg agcgatcacg caccgatcca
      601 acaaagcttg tccggagtcg tttgcgatct ccagcaggtc ggccgtgttt ggcaggcgat
      661 actcaatctc gtactcgcct gaaaccaact tcaatcgctc atcgccctga ggctcgacta
      721 ccgttgactc gagatcgcgc gcagtgaacg tgagctccag ttcattgccg cacttcggac
      781 acctcgtagt cgcctccacc tttggtccaa acaactgttc gcgcaatcgc aaaagctgcc
      841 gatcgcgttc gccaacactg accctggccc actccgcggc agacttgtgc ggccacgcga
      901 ggtggagcag tctgatcgca cgctcaagag gatgctgcgc ggttccctgc tcccacgttg
      961 ccaaaagatt gcttgcgttc agtgctgaca ctgccccgac atcggaaaca ccgatcgcgc
     1021 tactgagcgc acggcacgtt tccgctcctt tttagtcgct cgctacgcgg gctctgtgaa
     1081 agtcggttcg ctgggttcct gaacctcaac gtcacgcacc cagccctcgt tttccagctt
     1141 gatgtgctgg atcgcgacgg cattcgcatt tgcatccagg tcgggaaggg cttgaaactc
     1201 gctgacccag caacgaaata ctttgtaagc aatcacgagc tggccggctt cgttgtaggc
     1261 ctcgatgatg atgtctttgc gaaagtcctg gagcgacact tcggagccga gaccggcgcc
     1321 gaagttccac accttgttgg cccactgctc gaactctttg tcgtgagtga caccgcgctc
     1381 gagagtgatc ggctcgtact cggtgcgccc gggtgatttg cggctgctgc tcgggtcacc
     1441 gccttcgcga tgcttcacca cctcggttgt gcgcttcaaa gaactgactt tgctgacgcc
     1501 ggcgacgtac ttggcatccc acttcacgcg gaatttgaag tttttataag ggtcgaaacg
     1561 ctgagcgttg acggtaaatt gtgccatgag aagctcctct tttttcgatt gccttagacc
     1621 tcaatctggc cggccatctg ctgaagtttg atcactacga attcggcggg tttcaaaggc
     1681 gcgaagccga ccacgatgtt cacgatgccg aggttgatgt cgttctgcgt cgtcgtctcg
     1741 tgatcgcatt tcacgaagta agcttcgcgt ggcgaactgc cttgaaatgc gccctggcgg
     1801 aaaaggttgt gcatgaacgc gccgacgttg agccggattt gcgcccacaa tggttcatcg
     1861 ttcggttcga acacgaccca cttcgtaccg cgaaacaggc tctcttcgat gaacagcgcc
     1921 gtacggcgaa ccgggatgta cttccactcg tcggcaagtt gatctgcgcc gcgcagcgtt
     1981 cgcgaacccc agatgacgcg gcccgcgact ccgaacgaac ggaggcaatt cacacccaac
     2041 ggattcagtt gtccgttttc gggatcggtc agcgagatct gtaaagcggg aacgccattc
     2101 aacgacgcgt ccaaaccagc cggcgctttc cagacacctc tttgcgtgtc ggttctcgca
     2161 aacacaccgg cgaccgcgcc acacggaacg aagttttcga tcaaaccatc ctgcaacggg
     2221 tccgactgcg aaatccgcgg gaagaaaatc gcggcgttgc gcgcgtcctg gccgctgagc
     2281 gcgaaagtgt tgatgccggt tatcgcgttc gcgacgctgg tccaaccgct cggcggatcc
     2341 acgatcaaca tcgctcttcg ttcgacacac aatgccagcg cagcgctgag aacggcgcca
     2401 ctaacgtcga ccgtgcgagt gaacggcgtg atgcagagca gattgaaaat gtctgtcttc
     2461 cttaacgcgt gcacgccggt cttcgcattt gcatcgccga gatagtcggc ttcggccagc
     2521 actgcgcctt cgtcgccgtc gggattggcc tgcgagtagg tgccggccgg ttggttatcg
     2581 gcgaacggat cgccactcgc aacaggcggg tgcggcgggc cgggacgcgc cgcaggggct
     2641 gcgccctgaa cgcgtacgag tgcggatgac tgcgttaaca ccttgtctgt ccggcgcgga
     2701 gaattcgggt cgatcgacag gttcatgaaa cgctcttcag cgccgcttcc ggtgtcgcgg
     2761 attaccaggt tgaagagatt tgcgtctgaa gggtgatgac tgacgcgaac gcgtaatcgt
     2821 tctccccagg tgccggggtt tgcggcgacg agcgtggcgc cgccgggcag accgatcgtc
     2881 gccggtgctc cgtttgacag tctcacgatg atggcctgac ttccgccgtt caggtagaag
     2941 tcgcgcacgg cgtaactcat cgtgctgtcg atggacagcc ccccgaagat gcgttcatag
     3001 tcaccgaaac tattgacgac tgtgggctct tcaattggac cacgtcgcgc tgcgccgatg
     3061 aacgcagcaa cagaggttgc gactccagtg atggtccgaa caccgctggg aatttcctcg
     3121 acgtacacgc ccggataggt cagtgcactc ggcatagttg ttacctcctg ttggtattgc
     3181 aacgcggctc atgaagcggc ggctgcaatc tgtctttagt gattattgct ttctaatatg
     3241 cgagctattt cgtcctgctt ctcgcgattg agccagtagt aaggcggcaa acctgggcgt
     3301 cgccgttcga cgacgagccc ttcggaaacg agttgggcga tgctcgcctc gatctcgaaa
     3361 tatttgcact cggtccattc cttcaacagc caccactgcg cgatgccatc caacgtgtcc
     3421 ttcgcgtggg ggtgaacttg aaggtaatga aggatgtcgc gtgcgatttt tcgttcctgt
     3481 tgagactgaa tgctcactca ttgaatcttt cgtcgtagcc acggtgcgag cgtggaggcg
     3541 taagagcacg cgcagtgcca gaggaaaaga ggcgggtttt tgggattttc taaacctgga
     3601 ccatggttga gtgggaccta tttgccccgg ctgaagttga ggtaaggagg ttgggtatca
     3661 gcaacccacc gaccgtgtcg gtggtact
//
LOCUS       DASWTX010001238         2821 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_173186, whole genome shotgun sequence.
ACCESSION   DASWTX010001238 DASWTX010000000
VERSION     DASWTX010001238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2821)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2821
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173186"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1391
                     /locus_tag="VGD38_18825"
     CDS             <1..1391
                     /locus_tag="VGD38_18825"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY0730148.1"
                     /translation="NPEGSVDLQPDTVVATNTDNTAFKTALRALTENTANKRPNRTVP
                     PFTSQLGQKDKPYAEMEFPTVEYRLLALFRFWNVINYFFPYKKHIDEPWENVLPRYIP
                     KFESNKDVVDYQMTVREMVTEIRDSHGGTRNANASQDKMGRFQPALFVGYLEDKSVVT
                     KVLDDKLPIKVGDVILTIDGEPVEKRREHLARYVASSTPQWLMRLVHFRLLLGQKDTV
                     VNLRVQGVDNQIREVALPRSQSIMDPKLAAVLQRTTPIIQVLPSGFGYVDRARLPAGD
                     VDKMFDTIKNTPAVIFDMRGYPNGTAWSIAPRLTEKKNVVAAQFSRPLLEAKNLSDPE
                     SAEASFSFAQRIPERKGDVYHGKVVVLINDDAISQSEHTCLFFESVTDVTFIGTPTAG
                     ANGDITFMVLPGNLQVSFSGHDVRHADGRQLQRVGIQPTIKVAPTIRGTIEGRDEILE
                     RAIKYLGETLNK"
     gene            1466..1915
                     /locus_tag="VGD38_18830"
     CDS             1466..1915
                     /locus_tag="VGD38_18830"
                     /inference="COORDINATES: protein motif:HMM:NF024297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY0730149.1"
                     /translation="MKKLVVLFAVVAGVGLLSIPIYSASVASSEAAAARVPLEAYIQG
                     HATGNGDFMRKAFHTEAKVMAFRDGKMMNMTSEEFASRFNGKPAADEAQRKRRIESVE
                     ITGNAGVGKIILEYPTVTYTDYMSLLKVGDEWKIVNKVFYAEPKAKQ"
     gene            2312..>2821
                     /locus_tag="VGD38_18835"
     CDS             2312..>2821
                     /locus_tag="VGD38_18835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730150.1"
                     /translation="MNFTIKMRNELQGTDATMFTGKMKVAKARSNEVGPKAANKWVYF
                     VDHDWNLPIGYVYLTASDVHGWKMPDFHVAFWVRGDAYKFDPHLFYQGKEVGKKFFEG
                     TEVGRAGCEAVIENNTTHYVEDAVPQKAKWARVECDFPNIKGSNTTGEAPSIFGEIFT
                     LADNPGEYEF"
BASE COUNT          705 a          807 c          766 g          543 t
ORIGIN      
        1 tcaaccccga aggctccgtc gatcttcaac ccgacaccgt cgtcgcgacc aacaccgata
       61 acacggcttt caaaacagca ctgcgcgccc tcaccgagaa cactgccaat aagcggccca
      121 accgaaccgt tccgccgttt acatcgcaac tcggccagaa agacaagcct tacgccgaaa
      181 tggaatttcc aacggtcgaa tatcgcctgc tcgcgctgtt tcggttctgg aacgtaatca
      241 actatttctt tccttacaag aaacacatcg acgaaccctg ggaaaacgtg ctgccacgtt
      301 acatcccgaa attcgagtcg aacaaagacg tggtcgatta tcagatgacc gttcgcgaga
      361 tggtcactga aatccgcgac tcgcacggcg gcactcgcaa cgcaaacgcg tcgcaggaca
      421 agatgggccg ctttcaaccc gcgctcttcg tcggttatct ggaagacaaa tcggtggtca
      481 cgaaagtcct cgacgacaag ctgccgatca aagtcggcga tgtaattctg acgatcgacg
      541 gcgaaccggt cgaaaagcga cgcgaacatc tcgcgcgata cgtcgcgtct tcaacaccgc
      601 agtggctgat gagactggtc cactttcgtc tgttgcttgg acagaaagac accgttgtga
      661 acctgcgcgt gcagggcgtc gacaatcaaa ttcgtgaagt cgctttgccg cgatcgcagt
      721 cgatcatgga tccaaaacta gcagcagtgt tacaacgcac gacgccgatc attcaggtgt
      781 tgccgagcgg tttcggttac gtcgatcggg ctcgtctgcc ggcgggcgac gtcgacaaga
      841 tgttcgacac gatcaaaaac acgccggcgg tgattttcga catgcgcggt tatccgaacg
      901 gcaccgcatg gtccatcgcg ccgcgtctga ccgaaaagaa aaacgtcgtc gccgcacagt
      961 tctcgcgacc gctcctcgaa gcgaagaacc tgagcgatcc ggaatcggcc gaagcaagct
     1021 tctccttcgc gcaaagaatc ccggagcgca aaggcgatgt gtatcacggc aaggtcgtcg
     1081 tgctgatcaa cgacgacgcg atcagccagt cagaacacac gtgcctgttt ttcgagtcgg
     1141 taaccgacgt cacgtttatc ggcacgccga cggccggcgc aaacggcgac atcacgttca
     1201 tggttctgcc cggaaatctg caggtcagtt tcagcggaca cgacgtgcgc cacgccgacg
     1261 ggcggcagtt acaacgagtc ggaatacaac caacgatcaa ggtcgcgccg acgatccgcg
     1321 gaacaattga aggccgcgac gaaattctgg agcgcgcaat taaatacctc ggagagacac
     1381 tgaacaaata gcacttccag tcgtactcat taccgtttct ctagtaaact ctcggcccaa
     1441 aacagtcaga gcaatggagg cggttatgaa gaaattggtc gtgctatttg cagtcgttgc
     1501 cggcgtcgga ttgttgagca tcccgattta ctctgcgtca gtcgcatcgt cagaagcagc
     1561 cgcggcgcgt gtgccgctcg aggcctacat tcagggccac gctaccggta acggcgactt
     1621 catgcgcaaa gcgtttcaca ccgaagcgaa ggtgatggcg tttcgcgacg gcaagatgat
     1681 gaacatgacg tctgaagaat ttgcttcgcg tttcaacggc aagcccgcgg cagacgaagc
     1741 gcagcgtaag cgacgaatcg agagcgtgga aatcaccggc aatgccggcg tcggaaaaat
     1801 catcctcgaa tacccgactg tcacttatac ggactacatg tcgctgttga aggtcggcga
     1861 cgagtggaag atcgttaaca aagtctttta cgccgagccc aaagcgaagc aatgaaacgt
     1921 cgattcgcgc cgtcggcctg gtccggttgc tttcgttttt gtagttcccg tcgagtaata
     1981 gcaacgaacg ccggaggcgt tcactaattt cagcccaggg ttgcttcaac cctgggaacc
     2041 aacaaacaaa gcgtaccaac cctgaaaggg tttacacgca gcgaaccctt tcagggttta
     2101 attccttctg tccttcaacc cagggttctc gcttaccgct cgaaccctgg gctgcaatta
     2161 gcgaacgcct acggcgttag tcagcggcgc ccaccggtcc gtgggtcaag tttgactgct
     2221 cgaccaacaa catcgagaag gttactggtg gaagaccgag tgcggcggcc gcgacattcc
     2281 cgaagacaaa ggctcgcttt acaccggccc cgtgaacttc acgatcaaga tgcgcaacga
     2341 gctacaaggc acagacgcga cgatgttcac cggcaaaatg aaagtcgcga aagcgcgctc
     2401 gaacgaagtc ggaccaaagg ccgctaacaa gtgggtctac ttcgtcgatc acgattggaa
     2461 ccttccgatc ggatacgtct atctgacggc ttccgacgtg cacggctgga agatgccgga
     2521 tttccacgtg gcgttttggg tgcgcggcga cgcatataaa ttcgacccgc acttgttcta
     2581 ccagggcaag gaagtgggca aaaagttttt cgaaggcacg gaagtcggcc gcgcgggttg
     2641 cgaagccgtg atcgagaaca acacgacgca ctacgtcgaa gatgcagtgc cgcagaaagc
     2701 caagtgggcg cgtgttgaat gtgattttcc aaacatcaaa ggcagcaaca cgacgggcga
     2761 agctccgagc atcttcggcg agatattcac actcgccgac aacccgggcg aatacgagtt
     2821 c
//
LOCUS       DASWTX010001239         2944 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_145151, whole genome shotgun sequence.
ACCESSION   DASWTX010001239 DASWTX010000000
VERSION     DASWTX010001239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2944)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2944)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2944
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145151"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(228..1742)
                     /locus_tag="VGD38_18840"
     CDS             complement(228..1742)
                     /locus_tag="VGD38_18840"
                     /inference="COORDINATES: protein motif:HMM:TIGR00711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY0730151.1"
                     /translation="MGRWVLAATILASSMAFIDGTVVNVALPFLQTNLNATAIGIQWV
                     VEAYSLFLSALLLVGGSLGDLYGRRRIFNIGVVVFAIASAACGFAANIEQLIAARAVQ
                     GIGGALLVPGSLALISASFSEEERGKAIGTWSGFSAITTAIGPVMGGWLVEHVSWRAV
                     FFLNLPLALAVLVISVWRVPESREENHVGSLDWLGALLATVGLGALVFGLIESPRVGF
                     ANPLVLATLIGGVVCLVVFVLHEARAKNAMVPLRLFRSKDFAGANLLTLLLYSALGGM
                     MFFFALNLVQVQGYSATAAGAALLPFIVIMFTLSRWSGGLFDRFGPRLPLIIGPTIAA
                     VGLALFAVPSVSDNYWTSFFPAVVVLGFGMAVTVAPLTTTVMGSVSEEQAGTASGINN
                     AVSRTAGLLAIAVFGVVMLHAFSHELNQQLNQANFDEQLKSSILEQRVKLAGLEAPSG
                     SDPSVQQSVKQIVAESFVFGFRLVMLTYAALALASALSAWWLIGKSRPIHTRQQ"
     gene            complement(1752..>2944)
                     /locus_tag="VGD38_18845"
     CDS             complement(1752..>2944)
                     /locus_tag="VGD38_18845"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Xaa-Pro peptidase family protein"
                     /protein_id="HEY0730152.1"
                     /translation="EPAQQSTQPDAIRRLQRMTGNVVPITLDERKARIEKAQRLMREQ
                     KVDAIYIEPGSSMFYFTGMRWGTSERMFAVVIPARGELAWVCPKFEEERARELIKIGT
                     DIRTWEEDESPYQRVAEVLKDRGIRTGTIGIEERVRFFLYDGIRLAAPALKFVNATPI
                     TAGCRMFKSPTELALMQIANDIAIVAYKATRDSMTEGMTQGEFAGNCAAAFRALGSSG
                     GIFVSFGKYTAFPHGSSTPQRLKEGDVVLMDGGCSVDGYQSDITRTFVFGKATDRQRQ
                     IWDLERKAQDAGFAAAKVGAPCEAVDAAARKVITDAGFGPDYKVPGLPHRTGHGIGLD
                     GHEWTNFVRGNKTPIQPGMCFSDEPTVVIYGEFGIRLEDCLYITEDGPKFFTKQSASI
                     DEPF"
BASE COUNT          660 a          949 c          811 g          524 t
ORIGIN      
        1 cctgttgccc cataaaaacg gccttgagaa atatctttga ggaaatcttg agtgctgcct
       61 gaggactcgc cgagcgcgag gattgtaatc tcaaaactca ataactcaaa gtagaggatc
      121 tccccatgat cgagaagaag aggacagcgg aacttgtcga aacgtggttg gtctatctcc
      181 tcagcgcagc cgtcgcgggg ggagcatttc tgctggtctg gttgatctca ttgctggcgg
      241 gtgtgaatcg ggcgtgactt gccgatcagc caccacgcac tgagcgcgct cgcgagtgcg
      301 agggcggcat aggtcaacat gaccagacga aaaccgaaca caaacgattc ggcgactatc
      361 tgtttcaccg actgctgcac cgacggatcc gatccgctcg gcgcttccaa acccgccagc
      421 tttacccgtt gctcgagaat cgaactcttc aactgctcgt caaaattcgc ctggtttagc
      481 tgctgattca gttcgtgact gaaggcgtgc aacatcacca cgccaaacac cgcgatcgcc
      541 agcaaaccag ccgttcgcga aaccgcgttg ttgattcccg acgcggtgcc cgcctgttcc
      601 tcgctaaccg agcccatcac ggtggtcgtt agcggcgcca ccgtgaccgc cattccgaaa
      661 ccgagcacca cgaccgcggg aaagaaactg gtccagtagt tgtcgctgac agacggcacg
      721 gcaaacagcg ccaggccaac agccgcgatc gtcggcccga tgatgagcgg cagacgcggg
      781 ccgaaacgat cgaacagacc gcccgaccag cgcgacaacg tgaacatgat cacgatgaac
      841 ggcagcagcg ctgctccggc ggcagtggcg ctgtaaccct gtacctgaac caggttgagt
      901 gcgaagaaga acatcatgcc gccgagcgcc gagtacagaa gcaatgtaag cagattcgca
      961 cccgcgaagt ctttcgaacg aaagagtcgc aacggtacca tcgcattctt cgcccgcgct
     1021 tcatgcagta caaacacgac gagacacacg acaccgccga tcagcgtcgc caacacgagc
     1081 ggattcgcaa aaccaacgcg cggcgattcg atgagaccga aaacgagagc gcccaaaccc
     1141 accgtcgcca acagcgcgcc gagccagtca agcgaaccga catggttctc ttcacgactc
     1201 tcaggcacac gccagaccga gatcaccagc accgcgagcg ccagcggcag gtttagaaaa
     1261 aacaccgcac gccacgagac gtgctcgacc agccaaccgc ccatcaccgg cccgatcgcc
     1321 gtcgtgatcg cagaaaaacc cgaccacgtg ccgattgctt tgccgcgttc ttcctcgcta
     1381 aacgacgcgc tgatcaaagc gagactgccg ggcacgagca gcgcgccgcc gattccctgc
     1441 accgcgcgcg cggcgatgag ttgttcgatg ttcgcagcga agccacaagc cgcggacgcg
     1501 atcgcaaaca cgacgacgcc gatgttgaag atccggcggc ggccgtaaag atcgccgagc
     1561 gaacccccga ccagcaacag cgcggaaaga aacagtgaat acgcctcgac gacccactga
     1621 atcccgatcg ccgttgcgtt gagattggtt tgcaggaaag gaagcgcgac gttaacgacc
     1681 gtgccgtcga taaacgccat gctcgaggca agaatcgtcg ctgcaagaac ccatcggccc
     1741 atatttccgg cctaaaaagg ttcgtcgatg gaggcgcttt gtttagtgaa aaacttcggg
     1801 ccgtcttcgg tgatgtacaa acagtcttcg agacgaatgc caaactcgcc gtaaatcacc
     1861 accgttggtt cgtcgctgaa gcacatgccc ggctgaatcg gcgtcttgtt cccgcgcacg
     1921 aagttggtcc actcatgacc gtcgagcccg atgccgtgtc cggtgcgatg cggcaaaccg
     1981 gggaccttgt aatccggccc aaaacccgcg tccgtgatca ccttgcgcgc ggccgcatca
     2041 accgcttcac acggcgcgcc gactttcgct gccgcaaaac ccgcgtcctg cgctttgcgc
     2101 tcgaggtccc agatctgtcg ctgccgatcg gtcgccttgc caaacacaaa cgtgcgcgtg
     2161 atgtctgact ggtaaccatc aacgctacaa ccgccgtcca tcagcaccac gtcgccttct
     2221 ttcaaacgct gcggcgtgct gctgccgtgc ggaaacgccg tgtacttgcc gaagctcacg
     2281 aaaatcccac ccgacgaccc gagcgcgcga aacgccgccg cgcaattccc ggcaaactcg
     2341 ccctgcgtca tgccttcagt catgctgtcg cgcgtggctt tgtacgcgac gatggctatg
     2401 tcgttcgcga tctgcatcaa cgcgagttcg gtgggcgact tgaacatgcg gcaaccggcc
     2461 gtgatcggcg tggcgttcac aaacttcaac gccggcgcgg cgagtcgaat gccgtcgtaa
     2521 agaaagaacc gcacgcgttc ctcgataccg atcgtgccgg tgcgaatacc gcgatccttg
     2581 agcacttcgg cgacgcgttg atacgggctc tcgtcttctt cccacgtgcg aatgtcggtg
     2641 ccgatcttaa tcaactcgcg cgcgcgttcc tcttcaaact tcggacaaac ccaggcgagc
     2701 tcgccgcgcg cgggaatcac aaccgcgaac atgcgctcgc tcgtgcccca acgcatgccg
     2761 gtgaaataaa acatgctgct gccgggctcg atgtagatcg cgtcgacctt ctgctcgcgc
     2821 atcagccttt gcgctttctc gatgcgcgcc ttgcgttcgt cgagcgtgat cggaacgacg
     2881 tttccggtca tgcgttgcaa acgccgaatc gcatcgggtt gcgtcgattg ttgcgcgggc
     2941 tcga
//
LOCUS       DASWTX010001240         1987 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_235980, whole genome shotgun sequence.
ACCESSION   DASWTX010001240 DASWTX010000000
VERSION     DASWTX010001240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1987)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1987)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1987
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235980"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            71..490
                     /locus_tag="VGD38_18850"
     CDS             71..490
                     /locus_tag="VGD38_18850"
                     /inference="COORDINATES: protein motif:HMM:TIGR00149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary thiamine-phosphate synthase enzyme
                     YjbQ"
                     /protein_id="HEY0730153.1"
                     /translation="MKSYRKELWFNVPTRRAFINITPQVEQCLRESGIVEGLALVNAM
                     HITASVFINDDESGLHHDYETWLEQLAPHEPVSHYHHNRTGEDNADAHIKRQIMGREV
                     VVAITGGELDFGPWEQIFYGEFDGGRRKRVLVKIIGE"
     gene            complement(501..797)
                     /locus_tag="VGD38_18855"
     CDS             complement(501..797)
                     /locus_tag="VGD38_18855"
                     /inference="COORDINATES: protein motif:HMM:NF016876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008657 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) inhibitor activity
                     [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA];
                     GO_process: GO:0030541 - plasmid partitioning [Evidence
                     IEA];
                     GO_process: GO:0051290 - protein heterotetramerization
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEY0730154.1"
                     /translation="MAEINWTRESEIWLRDIYSYIAADNPHAAALTVTRIYEKAQLLK
                     KHPRLGHPYEPEQTREVRILLYEHYRIAYLIRPDGNIDILGVFHGALDIERYFL"
     gene            complement(785..970)
                     /locus_tag="VGD38_18860"
     CDS             complement(785..970)
                     /locus_tag="VGD38_18860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730155.1"
                     /translation="MATAKEHIAELIKRQPDDSTYDDIVRELAFDLMVQRGLKDSDEG
                     RTISNEEMSHRIRTWQK"
     gene            1087..1428
                     /locus_tag="VGD38_18865"
     CDS             1087..1428
                     /locus_tag="VGD38_18865"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY0730156.1"
                     /translation="MASVADVERSMVFYRHLGFEVGDRFAPEGATRPVWAWLYSEGAQ
                     LMVAAADKPVLAEQQRVLFYVHTDDVAAAHKELSEAGLNPGRITTPFYAPRGEFQLSD
                     PDGYVVMVTHT"
     gene            complement(1467..>1987)
                     /locus_tag="VGD38_18870"
     CDS             complement(1467..>1987)
                     /locus_tag="VGD38_18870"
                     /inference="COORDINATES: protein motif:HMM:NF018213.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="putative glycolipid-binding domain-containing
                     protein"
                     /protein_id="HEY0730157.1"
                     /translation="WHGHEACRVYSLGTEWRLEGTAVFTEEGRPCRLSYLIACDSGWN
                     TLNGVVTGWLGEDVVNVELLVDAERRWTMNGVYRAEVDGCVDLDLNFSPSTNLLPIRR
                     LDLAVGQEAEVKAAWLRFPSFDLEPFSQVYTRLGEFRYRYSSRDGEFVAELTVDEVGF
                     PIIYPELWEVER"
BASE COUNT          471 a          584 c          504 g          428 t
ORIGIN      
        1 gcctttgtgc ttttgtgccg cttgtgcttt tttgtggctt caagtgctat agttcgcacc
       61 tctcgaaacc gtgaagagct atcgcaaaga actgtggttc aacgtgccga cgcgccgtgc
      121 attcatcaac atcacgccgc aagtcgaaca gtgcctgcgc gagagcggga tcgtcgaggg
      181 tttggcttta gtgaatgcga tgcacataac cgcttcggtc ttcatcaacg acgacgaaag
      241 cggactgcat cacgactacg aaacctggct cgaacaactc gcgccccacg aacccgtcag
      301 ccactatcat cataaccgaa ccggcgaaga taacgcggac gcccacatca aacgccaaat
      361 catgggccgc gaagtggtcg tcgcaatcac cggcggcgaa ctcgacttcg gcccctggga
      421 acaaatcttc tacggcgagt tcgacggcgg ccgccgcaag cgtgtgctgg tgaagatcat
      481 cggcgagtaa aacgcctgcg ctacaaaaag taacgttcga tatctaaagc gccatgaaag
      541 acgccgagaa tatcgatgtt accgtccggc ctgattaggt aagcgattcg gtagtgctcg
      601 tagaggagga tacgaacctc gcgggtttgc tcgggctcgt aaggatgccc aagccgcgga
      661 tgctttttaa gcagttgcgc cttttcatag attctagtga cagttagcgc ggcggcgtga
      721 ggattgtcgg ctgcgatgta gctgtagatg tcgcgcagcc agatctcgga ctcacgggtc
      781 cagtttattt ctgccaagtt cttatccggt gactcatttc ttcgttggag atcgtgcgtc
      841 cctcgtcaga gtctttaaga ccccgttgca ccattagatc aaacgccagt tcacgcacga
      901 tgtcatcgta agtgctgtcg tccggctgtc gctttatgag ttcagcgatg tgctctttcg
      961 ctgtagccat tgactcctcc atcctgggcg catcatagcg gagctctttc cagaccacaa
     1021 acgagtgcat tgtaacagct aactcatggc aatatgagga ttatgaaaac tcgacaactt
     1081 gttcccatgg cgtctgtcgc tgacgtagag cgttctatgg tgttctatcg acatctgggg
     1141 tttgaggtgg gggataggtt tgcgccggag ggggcgacga ggccggtgtg ggcgtggctt
     1201 tattcggagg gcgcgcaatt gatggtggcg gccgctgata aaccggtcct cgccgaacaa
     1261 cagcgagtcc tcttttatgt acacaccgat gacgtcgcgg cggcgcacaa agaactaagt
     1321 gaagcaggtc tcaatcccgg aaggatcaca acgcccttct atgccccgcg cggtgagttt
     1381 caactgagcg atcctgacgg ctacgtcgtg atggtcacgc acacgtaaac cgcgcactgg
     1441 agataaatca caaaccgcgg ctcactttag cgttcaactt cccacaactc cggataaatg
     1501 atcgggaaac caacctcatc caccgtcagc tcagctacaa actctccatc ccgactcgag
     1561 tagcgatacc gaaactcacc caacctcgta taaacctgcg aaaacggctc cagatcgaaa
     1621 ctcggaaacc gcagccacgc agccttaacc tccgcctcct gccccaccgc aagatcaagc
     1681 cgccggatcg gcaacaagtt cgtggacgga ctgaagttca gatccagatc gacacacccg
     1741 tcaacctccg ctctgtacac tccattcatc gtccagcgac gctccgcgtc aaccaaaagc
     1801 tcaacgttta cgacgtcctc gccaagccaa cccgtaacta ctccattcaa cgtgttccaa
     1861 cccgaatcgc acgctatcaa ataagaaaga cggcacggcc ggccttcctc tgtgaaaacc
     1921 gctgttcctt caagacgcca ttcagtcccc aacgaataaa cgcgacacgc ttcgtgaccg
     1981 tgccagt
//
LOCUS       DASWTX010001241         2725 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_235996, whole genome shotgun sequence.
ACCESSION   DASWTX010001241 DASWTX010000000
VERSION     DASWTX010001241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2725
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235996"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2725)
                     /locus_tag="VGD38_18875"
     CDS             complement(<1..>2725)
                     /locus_tag="VGD38_18875"
                     /inference="COORDINATES: protein motif:HMM:NF037017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY0730158.1"
                     /translation="IHVPHPELTRGPGWGILSTEPPFSTQTAADGSYSLTGLNPGTYR
                     ISTSNVFFPTRVSVGGTLAPGGNEEANLTLVSTLAGKIQGNVVRPDGTTSVGPGIRVT
                     LSGGSLAEATVLTDENGHYEFGEVFSAGSYNLTATDPASGQTNRISVSVERNKDAVFN
                     LRLLGFGTLRVQVLDGAGQPATGGSVTIDGTDYPNVHRFANVPVGSNGQVTFENLPEG
                     SYAVSATRFGLGGRVSARVTINATVDVSVQLQATGNVEGYVYLPDGTTAISLADVQLR
                     VGGRSIGYTVTSEGPDVGKFTFVNVPTGDFTLDAFDNHTGRVGRAAGTVTTQGETVVV
                     NVLLLPIGAVRGQVTANGVGVDHALVRITADGSGVRGANLFATTDPNGNYRFTGIPAG
                     RFVITVADAPGGQTGSASGTISGTVEPLPDTIVNIALEPSQTVRGTVYLNGGTQPVPG
                     AQVTITVAGRVFQTATNDQGVYALAFVPLGTVNVRAEAPVGYDRGEAAPVTGTQPGGT
                     VTANVTMNGVGIVSGTALDSNGSPLTSGTVTFTNSIWSPAVVINASVQPNGTFEITGV
                     PAGNFSLRLTVPGRVAVGSASGTALAGQTTNVTLQLEDAGTVTGRVHAADGSTPVQGA
                     SVSVTLNRPSGQVSFFTHTGAQGIWTLNNVPLGTLDIKVTDEVSGGVARARNVVLATN
                     GQVVDVGTMLLDSTPISVLSVEPANGAVSVPTNGTVVTITFSEPAEASSVTSGTVQLQ
                     LNNSNVSVTRSLSSDGRVVTLTPNNRLTESAVYKVFVNQVEDRAGLRIASAFTSTFTT
                     ADETAPSVTAISPANGATEVAPGVNVVVTFSEPIDSTDNLANIIKVSVSQATDTLAGN
                     YVLSADGRVATFTPAVALSDSTAYTVNINGQRDAAGNTQTQAVVTNFVTQDR"
BASE COUNT          527 a          812 c          840 g          546 t
ORIGIN      
        1 tgcgatcctg tgtgacgaag ttcgtgacga cggcttgcgt ctgcgtgttg cccgcggcat
       61 cgcgttggcc gttgatgttg acggtgtagg ccgtgctgtc ggacagagcg actgcgggcg
      121 tgaaggtcgc gacgcgtcca tcagcgctca gcacgtagtt gccggcgagc gtatcggtcg
      181 cttgagaaac tgaaactttg attatgttgg cgaggttgtc agtgctgtcg atcggctcgc
      241 tgaaagtgac cacgacgttt acgccgggtg cgacttccgt ggcgccgttt gcgggactga
      301 tcgccgtaac actcggcgct gtttcgtcag cagtcgtaaa cgtagatgta aacgcgctcg
      361 cgatacgcaa accggcgcga tcttcaacct ggttgacgaa gactttgtaa accgcgcttt
      421 cggtcaggcg gttgttcggc gtcagtgtta cgacacggcc gtcgctcgac agcgaccggg
      481 tgacgctcac gtttgagttg ttgagttgta attgaaccgt tccgctggtg acgctactgg
      541 cttcggccgg ttcggagaac gtgatcgtta cgacggttcc gttggtcggc accgataccg
      601 ctccattcgc cggctcgact gaaagaacac tgatcggcgt gctgtcgagc agcatcgtgc
      661 cgacgtcgac tacctgtcca ttggtcgcga gcacaacgtt tcgcgcgcgc gcaactccgc
      721 ctgaaacttc atccgtaacc ttgatgtcga gtgtgccgag cggcacgttg ttcaaggtcc
      781 agattccctg cgcgccggtg tgcgtgaaga acgacacctg cccgctcgga cggttgagag
      841 tgacggaaac agaagcacct tgtacgggcg tcgagccatc agcagcatga acccggccgg
      901 ttacagttcc ggcatcttcc aattgcagtg tgacgttcgt ggtctgtccc gcgagcgcgg
      961 tgcccgaagc agagccgaca gcaacgcgtc ccggaaccgt gagtcgtaac gagaagttgc
     1021 ccgccggaac gcccgttatc tcaaacgtgc cgttcggctg cacggaagcg ttgatgacaa
     1081 cagcaggact ccagattgag ttcgtgaacg tgactgttcc cgatgtgagt ggcgaaccgt
     1141 tactgtcaag cgcagtgccc gagacgatgc caactccgtt catcgtcacg ttggcagtaa
     1201 cggttccacc cggctgcgtt cctgtaacag gcgcagcttc gccccggtcg taaccaaccg
     1261 gcgcttcggc gcgaacgttc accgttccca gcggaacaaa cgcgagcgca tacacgcctt
     1321 gatcgttagt tgctgtttgg aacacgcggc cggcgacagt gattgtcact tgcgcgccgg
     1381 gcaccggctg cgttccgccg ttcaggtaaa ccgtgccgcg aacggtctga ctcggctcga
     1441 gcgcgatgtt gacgatcgtg tcgggcaacg gctcgaccgt tcccgagatc gtgccggaag
     1501 ccgagcccgt ttgaccgccg ggcgcatcgg ccaccgtgat cacaaaacgt ccggccggaa
     1561 tgccggtgaa gcggtagtta ccgttcggat ccgtcgtcgc gaagaggttg gctccacgca
     1621 cacctgagcc gtcggcggta atacgcacca acgcgtggtc caccccaaca ccattggcag
     1681 tgacttgacc acgaacagcg ccgatcggca acagcagtac gttgacgacg actgtctcgc
     1741 cttgcgtcgt gacggttccc gcggcgcggc ccacacggcc cgtgtggttg tcgaaagcat
     1801 cgagcgtgaa atcacccgtc ggcacgttca cgaaagtgaa cttcccgacg tcgggtcctt
     1861 cggacgtcac ggtgtaacca attgagcgtc cgccgacgcg cagttgcaca tccgcgagac
     1921 tgatcgccgt ggtcccatcc ggcagataga cgtatccttc gacgttgccc gtcgcctgaa
     1981 gctgaacgga aacgtcgaca gttgcattga tcgtgacgcg cgctgaaacg cggccgccga
     2041 gaccaaaacg cgtggccgag acggcgtacg aaccttccgg caagttttcg aaagtgacct
     2101 ggccgttgct gccgacaggc acgttcgcaa agcgatgcac gtttggataa tccgtgccgt
     2161 cgatggtcac actgccgcct gttgcaggct gaccggcgcc atccaacacc tgcacgcgca
     2221 gagttccgaa gccgagcagc cgcaggttga acaccgcgtc cttgttccgc tcgaccgaaa
     2281 cgctgatgcg attcgtctga ccactcgcgg gatcggtggc cgtcaggttg taactgccgg
     2341 cggagaagac ttcgccgaat tcataatgac cattctcatc cgtgagcacg gtggcttccg
     2401 caagcgagcc gccgctgagt gtcacgcgga tacctggacc aactgaggtc gtgccgtcag
     2461 gacgaactac gttgccctga atctttccgg caagcgtgct gaccagagtc aaattcgctt
     2521 cttcattgcc gccgggcgcg agcgtgccgc caacgctgac gcgcgttggg aagaagacgt
     2581 tggaagtcga gatgcgatac gttccgggat ttagaccggt caacgagtaa gagccgtcgg
     2641 cagcagtttg ggttgagaac ggcggttcgg ttgaaagaat tccccaaccg ggtccccgcg
     2701 taagctccgg atgcggaacg tgaat
//
LOCUS       DASWTX010001242         3723 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_210194, whole genome shotgun sequence.
ACCESSION   DASWTX010001242 DASWTX010000000
VERSION     DASWTX010001242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3723
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210194"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..450)
                     /locus_tag="VGD38_18880"
     CDS             complement(<1..450)
                     /locus_tag="VGD38_18880"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEY0730159.1"
                     /translation="MSIVRYDPFRDLRTLQEEVNRLFSTNLSRSFGDEGIGRGAWAPS
                     VDIYENKDQIVLEAELPGMKQEDFDLSIENNVITLRGERKFEKTEETDNYHRVERSYG
                     AFTRSFTLPQTVSAEGATAEYNNGVLRVTLPKREETKARKIEVKGMEE"
     gene            complement(599..1975)
                     /locus_tag="VGD38_18885"
     CDS             complement(599..1975)
                     /locus_tag="VGD38_18885"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEY0730160.1"
                     /translation="MYLFWSFEPYVRTLLEQRMGATPSPSAGTIISAVKLVLIGITTY
                     LFVRALNFLFFGLAFRLKRIDAPTLIRNIFTIVAFTILFLIAFTFIFPDVNLGALFTT
                     SAIFGVILGLALQDTLGNFFAGISLQADRPFQVGDVIVVGAERHTGVVEEISWRAVKI
                     RTFANHVMLIANSNAAREPIEVCPRDNLNARLVFFNTLYSDSPAKTIHVVREAVREAE
                     NVSTKVTPIVRIRNLGDNGVDYEVKYWLDDYAKYNDTDALVRQRIWYAFRRAGLNFAY
                     PTRTLYVERHSQLAQRDGGALVERLSAVDIFAPLSVEETGMLAQAAVRHVFAPGEMVI
                     RAGDPGSSMFVVHNGRVRVQVNDNGRPRTVATLNEGDFFGEMALFTGEPRTANVVALE
                     ETEVLEIGHSAMKRVFETNPDLVESLSFIIAERRQGLESHADSAAPASDASAGLLSAI
                     KRFFGLSQ"
     gene            complement(2059..3333)
                     /locus_tag="VGD38_18890"
     CDS             complement(2059..3333)
                     /locus_tag="VGD38_18890"
                     /inference="COORDINATES: protein motif:HMM:NF013715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HEY0730161.1"
                     /translation="MQRGAHGVRRTVARRRRLLTYLAILGPGMITANAGNDAGGIATF
                     ASVGAEFGYSLLWVLIPIAISLGIVQEMCARMGAVTGKGLADLVRERFGVRWTALIML
                     SLLIANAGVTVSEFVGIAAAAELFGISRFIAVPLAAILVWWLVAKGSYKKVEKVFLLM
                     SVVFLGYVVSAFLSRPDWGAVAVGLVKPTLRFEHAFIFTLVAVIGTTISPYMQVYVQS
                     SVVEKGVTADNYSETKTDVWVGTLFAILIVFFIIVSTAATLHKAGIQISSAEDAAHAL
                     RPLAGRYAQTLFGIGLFGASMLAAGVLPLATAYSISEALGFEKGVSRSFREAPIFLGT
                     FTFLVAFGAAIAVIPNLPLIRVLLVTQVINGLLLPVVLFAILRLVNNRELMGTKVNGP
                     IYNVAAWLTAILVTIISLLYLLMTFFPGLVRL"
     gene            complement(3417..>3723)
                     /locus_tag="VGD38_18895"
     CDS             complement(3417..>3723)
                     /locus_tag="VGD38_18895"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEY0730162.1"
                     /translation="IYYLYVVEAENSWKLLGVIALRNLILADPSVPLADVMRTEFQQA
                     SPVEPAKEVAQRMADYNLLALPVLDESGDILGIITVDDAMEILLPKDWRQRLPRLFG"
BASE COUNT          832 a         1053 c         1106 g          732 t
ORIGIN      
        1 ttcttccatg cccttgactt cgatcttgcg agctttggtt tcctctcgtt tcggtaacgt
       61 cacgcgcagg acgccgttgt tgtattcggc cgtcgcacct tctgcggaga cagtctgagg
      121 cagcgtgaaa gaccgggtga acgcgccata cgagcgctcg actcgatggt agttgtcggt
      181 ctcttccgtc ttctcaaact ttcgctcacc acgcagagtg atcacgttgt tttcgattga
      241 gaggtcaaag tcttcctgtt tcatgccggg gagttcggct tcgaggacga tttgatcctt
      301 gttctcgtag atgtcaacgc tgggggccca ggcgccacgt ccgatgcctt catcgccgaa
      361 ggagcgggaa agattagtcg agaacagtcg gtttacctct tcctgcaacg tacgcaggtc
      421 acgaaacggg tcgtaacgaa cgatgctcat aactgaaaac ctcctccttt aagtattcct
      481 tgtttgggta gcccagctgg ctgagcgtga gctcataata aagattgagt gtaagtctgt
      541 caagtctcaa agcggaggta ttttttgcag ggatttaagg cggattttga gactcggatt
      601 actgggagag gccgaaaaag cgcttaattg cggagagtag accggctgag gcgtcgcttg
      661 cgggggcggc tgagtcggcg tgggactcga ggccctgacg gcgctcggcg atgataaaac
      721 tcagggattc gaccaggtcg gggttcgttt cgaacaccct cttcattgcg gagtgcccga
      781 tttcgaggac ttcagtctct tcgagagcga ccacgttagc ggtccgcggt tcgcccgtaa
      841 atagggccat ttccccaaaa aagtcgcctt cgttgagcgt agcgacggtc cgcgggcggc
      901 cgttgtcatt gacctgcacc cgcacccggc cgttgtgaac cacgaacatc gatgaccccg
      961 gatcgcccgc gcggatgacc atttcgcccg gcgcgaagac gtgccgcacc gctgcctgcg
     1021 ccagcatccc ggtttcttca accgacagcg gcgcaaagat gtccacggcc gacagccgct
     1081 cgacaagggc tcctccatcc cgttgcgcca gttgactgtg acgctcgacg tagagcgttc
     1141 gcgtcgggta cgcgaagttc agcccggcac ggcggaacgc gtaccagatt cgctgccgca
     1201 cgagcgcgtc ggtgtcgttg tacttggcgt agtcgtcgag ccagtactta acttcgtaat
     1261 cgacaccgtt gtcgccgaga tttctgatcc ggacgatggg cgtgaccttg gtcgagacgt
     1321 tctcggcttc gcggacggct tcgcgcacga cgtgaatagt tttcgccggc gagtcggaat
     1381 agagagtatt aaagaagaca agacgcgcgt tcaggttatc gcggggacag acctcgatgg
     1441 gctcgcgggc cgcgttgctg ttggcaatca gcatgacgtg gttcgcgaac gtgcgaatct
     1501 tgaccgcgcg ccagcttatc tcctcgacca ctcccgtgtg acgttccgcg ccgacgacga
     1561 tcacgtcgcc cacttgaaac ggccgatcgg cctgcagcga gatgccggcg aagaagttgc
     1621 cgagtgtgtc ctggagcgca agaccgagta tgacgccgaa gatggccgaa gtcgtaaaca
     1681 gcgcgccgag attgacgtcc ggaaagataa acgtgaaagc aattaagaaa aggatcgtga
     1741 acgcgacgat ggtgaagatg ttgcggatca gcgtcggcgc gtcgatgcgt ttgagacgaa
     1801 acgcgagccc gaagaagaga aagttgagcg cgcggacgaa gaggtacgtg gtgataccga
     1861 tcagaactaa tttgacggcg ctgatgatcg tgcctgccga aggcgacggg gtcgctccca
     1921 tgcgctgttc gagcagcgtt ctaacgtagg gctcgaacga ccagaacagg tacattgcca
     1981 ggagggctgc agcccaggcg gcaaggaaga tgatggcctt atttgtgaaa cgagggcgcg
     2041 acacggcgcc tatttttatc acaaacgcac gagacccggg aaaaaagtca tcaggagata
     2101 aaggagcgaa atgatggtga cgaggatggc ggtgagccag gccgcgacgt tgtagattgg
     2161 tccattcacc ttcgtgccca tcagttcgcg attgttaacc agccggagga tggcgaagag
     2221 cacgaccgga agcaggagcc cattgatcac ctgcgtgacg agcaacacgc ggatcaacgg
     2281 caggttcggg atcacggcga tggccgcgcc gaaggccacg aggaacgtga aagtaccgag
     2341 aaaaatcggc gcttcacgaa agctgcgcga gacgcctttt tcaaagccga gcgcttcgct
     2401 gatcgagtaa gccgtggcca gcggcaacac gccggcggcc agcatcgagg cgccaaacag
     2461 cccgatcccg aacaacgttt gtgcatatcg tccggccaat gggcgtagcg cgtgcgcggc
     2521 gtcttccgcc gacgagattt gaatacctgc tttgtgcagt gtcgcggccg ttgaaacgat
     2581 gatgaaaaag acgatcagga tcgcgaagag agtgccgacc cagacgtccg ttttggtttc
     2641 cgagtagttg tccgcggtga cgcctttttc cacgacggac gactgcacgt agacctgcat
     2701 gtaaggcgag atcgtcgtac cgatcaccgc gactaacgtg aagataaagg cgtgttcgaa
     2761 ccgcagtgtt ggcttgacta aaccaacagc aactgcgccc caatccggtc tcgaaagaaa
     2821 cgcggaaacg acgtagccga gaaagacgac cgacatcaac agaaacactt tctcgacctt
     2881 tttatacgac cccttcgcaa ccagccacca aaccaggatc gccgcaagcg gcaccgcgat
     2941 gaaacgcgag atgccaaaca gttccgccgc cgccgcgata ccgacaaact ccgaaaccgt
     3001 cacaccggca ttcgctatca acagcgacaa catgattagc gcggtccaac gcacgccgaa
     3061 acgttcgcgc accaggtccg ccagtccttt accggtgacg gcgcccatgc gcgcgcacat
     3121 ctcctgcacg atgcccaaac tgatggcgat tggaatcagg acccagagga gtgaataacc
     3181 aaactcagcg ccgaccgaag caaaggtcgc gatgccgcct gcgtcattgc cggcgttggc
     3241 ggtgatcatg ccgggaccga gaatcgcgag gtaagtgagc agacgacggc gccgcgccac
     3301 tgtgcggcgc acgccatgag cgccacgttg cattaatcgg cgccctgcag ctcgaactgc
     3361 agctcgtggt tctgccactt ggaggttctc cgtccttcat cggtccagtt cgtgttttaa
     3421 ccaaacaagc gcggcagacg ttgccgccag tccttcggca aaaggatctc catcgcgtcg
     3481 tctaccgtga tgatgccgag tatatctcct gactcgtcaa gaacgggaag cgcgagcaag
     3541 ttatagtccg ccatgcgttg cgcgacctct ttcgccggct ccaccggact cgcttgctga
     3601 aactctgtcc gcatcacgtc tgcgagcggc actgacggat ccgctaggat cagattgcgc
     3661 aaggcgatta cacctagaag tttccatgag ttctccgcct cgacgacgta gaggtagtaa
     3721 atc
//
LOCUS       DASWTX010001243         4060 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_236015, whole genome shotgun sequence.
ACCESSION   DASWTX010001243 DASWTX010000000
VERSION     DASWTX010001243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4060
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236015"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..356)
                     /locus_tag="VGD38_18900"
     CDS             complement(<1..356)
                     /locus_tag="VGD38_18900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1232 domain-containing protein"
                     /protein_id="HEY0730163.1"
                     /translation="MSEVKLRSRMKNLLLFVPNLLLLSGRLMVDPRVPTTERVLVAGA
                     ILYAFIPLDFIPDMLPFVGQVDDAYLIAISLLRLMMVTDPLVVREHWRGGGDVVELVG
                     STALIAKKFLPARIRRV"
     gene            381..1388
                     /gene="pta"
                     /locus_tag="VGD38_18905"
     CDS             381..1388
                     /gene="pta"
                     /locus_tag="VGD38_18905"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008959 - phosphate acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEY0730164.1"
                     /translation="MDILERIRQRAASRPQHIVLPEGNDPRTVVAAAHCVNQRLARIT
                     MLGDENTIRATARENNLDLGGVTIVDHRRAGDFDKMVSLFHDLRRAKGLMPDEARTLV
                     SDPLYYGNLMVRMGQADGSVAGATNTTSHTVRAALHCIGVRTGFKLVSSFFLMALPRG
                     EFGHDGAMIYADCGVVIEPSAAELAEIALAAADSCRALLGTEPRVAMLSFSTKGSAKH
                     KLIDKVVEATRTVKARAPELQVDGELQADAALVPAVAQSKAPGSPVAGRANVLIFPDL
                     QAGNIAYKFTERLAGATAIGPILQGLDKPANDLSRGCTAQDIVDAVAITAVQAQARKT
                     N"
     gene            1413..2531
                     /locus_tag="VGD38_18910"
     CDS             1413..2531
                     /locus_tag="VGD38_18910"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0730165.1"
                     /translation="MFRFKLTLALLLIALAAPYSPAQQQKPPDEKEQDRVKVFTEEVR
                     LPVVALDAYGHYDPTLELDDILVLEDGVAQQLRSLRHLPANVLFVLDTGGELSGLGGQ
                     SKSTSLTRDVASALIGKLQNGTSIAVMQSGNAAQMLQPWTTDKNVVLKTLKNKLLSTK
                     RSRISEAIMSASEQLKDRPEGSRHVVMITDGVDSAGAKANRADAITKLVAARATVHII
                     SYTEFVRQKPDNKNSKVASGQQRPNSSDPIRSTDPTQPPSQNRSPSFVLGGFRFDPAM
                     RKQRKAYEAEVKKSEAVLKNVAEETGGKWLLPLNSEQMLAQADEIARAISAEYVVTYR
                     PKRPLAEAKPGEYRRIEVASRRVGLSLQARRGYVVPAQ"
     gene            complement(2548..3675)
                     /locus_tag="VGD38_18915"
     CDS             complement(2548..3675)
                     /locus_tag="VGD38_18915"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HEY0730166.1"
                     /translation="MPTIASPRILIVDDEVEITEILADLLSEDYDCIRAGSAEQALAL
                     LQDNEFQLVISDITMPGMSGLEMIPHVKAISPDTVVVMISGMQTVESAIGALRLGAFD
                     YLMKPFDLRQVEAVVKRALEHHELVVAKQRYENHLEELVEQRTAELDRALNSLEGAYR
                     STLKALTAALETRDSETHGHSERVVSYSLRLGREYGLNSDEMKSLEFGSLLHDIGKIG
                     VPDSILRKPAKLTDEEWVRMREHPLHGQQILRGIEFLQGAARVVAQHHEKWDGSGYPL
                     GLREHDIDICARIFAVADAFDAITSDRVYRRGKSYEAAAQELDDWAGRQFDPKVVEAF
                     HRVPKEDWEELHRLSLLPKQDQFDVRQFVQVMESQLEAAVR"
     gene            3928..4016
                     /locus_tag="VGD38_18920"
     tRNA            3928..4016
                     /locus_tag="VGD38_18920"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3962..3964,aa:Leu,seq:caa)
BASE COUNT          841 a         1177 c         1183 g          859 t
ORIGIN      
        1 actcttcgta tcctcgccgg caggaacttc ttcgcgatca gtgcagtcga tccgacgagc
       61 tcgactacgt cgccgccacc gcgccagtgt tcccgcacca cgagcggatc ggtcaccatc
      121 atcagacgca ataacgagat cgcgatcagg taagcatcgt cgacctggcc cacgaacggc
      181 agcatgtccg gaataaaatc gagtggaatg aacgcgtaga gaatcgcacc cgcaaccaaa
      241 acccgttctg tcgtcggcac gcgcgggtcg accatcaaac gcccgctgag caacagcagg
      301 ttcgggacaa acagcagcag gtttttcatg cggcttcgca gctttacttc tgacatgcca
      361 cacattatac agattacgca atggacattc tcgaacgaat tcgccaacgc gccgcttcca
      421 gacctcaaca catcgtgctt cccgagggta atgatccccg gaccgttgtc gccgcggctc
      481 attgcgtgaa tcaacgcctc gcgcggatca cgatgctggg cgatgaaaat acgattcgag
      541 ccaccgcgcg tgaaaacaat ctcgatctcg gcggcgttac gatcgtcgat caccgccgtg
      601 ctggcgattt cgacaagatg gtttcactgt ttcacgatct gcggcgtgca aaagggctca
      661 tgcctgatga agcgcggacg ctcgtttccg atccgttgta ctacggcaat ctgatggtgc
      721 gcatgggcca ggctgacggt tctgtcgcgg gtgctaccaa cacgacgtcg cacacggtgc
      781 gcgccgcgtt gcactgcatt ggcgtgcgca cgggtttcaa gctggtctcg agtttctttt
      841 taatggcgtt gccgcgcggc gagtttggac atgacggcgc gatgatctat gccgattgtg
      901 gtgtcgtgat cgaaccgagt gcggcggagt tggccgagat cgcgctggcc gctgcggatt
      961 catgtagagc attgttgggc acggagccgc gcgtggcgat gctctcgttt tcgaccaaag
     1021 gcagcgcaaa gcataagttg atcgacaagg tcgtggaagc gactcgaacc gtgaaagcgc
     1081 gcgcgccgga gttgcaggtt gacggcgagc ttcaggcgga cgcggcgctc gttcccgcag
     1141 tcgcacagtc gaaagcgccg ggttcgccgg tcgccgggcg tgcaaacgtt ttgatctttc
     1201 ccgatcttca ggcgggaaac atagcttaca agtttacgga acggctggcg ggcgccaccg
     1261 ccatcgggcc gattttgcag ggcctggaca aaccggccaa cgatctctcg cgcggttgca
     1321 cggcgcaaga cattgttgac gccgtcgcca tcacggccgt tcaggcgcaa gcccggaaaa
     1381 ccaactaatc ttccgaagca tctttgttat ctgtgttccg ctttaaactg accctggcgc
     1441 ttcttttgat agccctcgct gcaccctaca gtcctgccca acagcaaaag ccacccgatg
     1501 aaaaggaaca ggaccgcgtc aaggttttca ccgaagaagt ccgtctgccc gtcgtcgctt
     1561 tggacgccta tggccactac gatccgacgc tcgagctcga cgacatactc gtgctcgaag
     1621 acggcgtggc gcagcagctt cgcagtttgc ggcacctgcc ggcaaacgtt ttgttcgtgc
     1681 tcgacacggg tggcgagttg agcggtctcg gtggacagtc aaagagcacg tcgctgacgc
     1741 gcgatgtcgc ttcggccctg atcggaaaac ttcagaacgg aacgtcgatc gccgtgatgc
     1801 agtccggtaa cgccgcgcag atgttgcagc cgtggaccac cgacaagaac gtcgtgctga
     1861 agacgctcaa gaacaaactg ctttcgacga agcgttcgcg aatctcggaa gcgattatga
     1921 gcgcgagcga gcagttgaaa gatcggccgg aaggaagccg tcacgtcgtg atgatcacgg
     1981 atggcgtcga ctcggccggt gcgaaagcga accgcgcaga tgcgatcacg aaactggtcg
     2041 ccgcgcgcgc cacggtccac atcatcagct acacggagtt tgtgcggcag aagcccgata
     2101 acaagaattc gaaagttgct tccgggcagc agcgtccgaa cagttccgac ccgatccgtt
     2161 cgaccgatcc gacacagccg ccgagccaga atcggtcgcc gtcgttcgtc ctcggcggct
     2221 tcaggttcga tccggcaatg cgaaagcaac gcaaggctta cgaagctgaa gtaaagaaga
     2281 gcgaagccgt gttgaagaac gtggcggagg aaactggcgg taagtggttg ttgccgctca
     2341 acagcgaaca gatgctcgcg caggctgacg aaatcgcgcg tgcgatcagt gcggaatacg
     2401 ttgtgactta tcgtccgaag cgtccgttgg cggaagcgaa accgggggaa tatcggcgca
     2461 ttgaggttgc gtcgcgaaga gtgggattga gcctgcaagc acgccgcggc tacgttgtgc
     2521 ccgctcagta gttttattcg acgatcctta tctaactgcc gcttccaact gcgattccat
     2581 cacctgcacg aactgacgca cgtcaaactg atcctgtttc ggtaacagcg ataaccggtg
     2641 caactcttcc caatcttcct tcggcacccg gtgaaacgcc tcgacaactt tcggatcaaa
     2701 ctgccggccg gcccagtcgt ctaactcctg cgccgctgct tcgtacgact tcccgcggcg
     2761 atacacacga tcgctcgtga tcgcgtcgaa cgcgtcagcc accgcgaaga tacgggcgca
     2821 gatgtcgatg tcgtgctcgc gcagtccaag cggataaccc gagccgtccc acttctcgtg
     2881 atgttgggcc accacgcgcg ccgcgccctg taaaaactca atcccacgca ggatctgctg
     2941 gccgtgcagt ggatgctcgc gcatgcgtac ccattcttca tccgttagct tcgcgggttt
     3001 gcgcaggatc gaatccggca cgccgatctt gccgatgtcg tgcagtagcg aaccgaattc
     3061 cagcgacttc atctcgtcgc tgttcaggcc atactcgcgg ccaagtcgca ggctgtaact
     3121 gacgacgcgt tcggagtggc cgtgtgtttc ggagtcgcgc gtttcgagtg ctgcggttaa
     3181 tgctttcaat gtcgagcgat acgcaccttc gagcgagttc agcgcgcgat ccagttccgc
     3241 ggttcgttgt tcgaccagtt cttcgagatg gttttcgtag cgttgtttgg cgacgacgag
     3301 ctcgtgatgt tcgagcgcgc gcttgacgac cgcctcgacc tgccgcaaat cgaaaggctt
     3361 catcaggtag tcgaacgcgc cgagacgcaa agcgccgatc gcgctttcca cggtctgcat
     3421 gccgctgatc atcacgacga cggtgtcggg agaaatggcc ttcacgtgtg gaatcatctc
     3481 gagtccactc atgcccggca ttgtgatgtc gctgattacg agttggaatt cattgtcttg
     3541 cagcagggcg agcgcttgtt cggctgagcc ggcgcgaatg cagtcgtagt cttcactcag
     3601 caagtcggcg agaatttctg taatttcaac ttcgtcatcg actatcaata tgcggggcga
     3661 cgcaattgtc ggcatgtggt ctctcctgga acgacagggc aatgggtgct cgggaatcgc
     3721 ttaaagcttt cagccgcttt tgtaagggta ggttcggggc gttggagtgc cctgccgcaa
     3781 atggctaaag cattctagcc ttttatccgg cctgtggcaa acaagttttt gcacaggtat
     3841 ttaggtccgg cggattggac caataatggg gctttttcgg cgctgttgcg ctcttgggga
     3901 aagggcctta tgatgtcagc ccttcgcgcc ggagtggcga aattggtata cgcaccagac
     3961 tcaaaatctg tcgagcttca ctgctcatgt cggttcgagt ccgacctccg gcaccaactt
     4021 tttcgctagc ccttccaccg agtatctcaa caatgagcgc
//
LOCUS       DASWTX010001244         3945 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_145191, whole genome shotgun sequence.
ACCESSION   DASWTX010001244 DASWTX010000000
VERSION     DASWTX010001244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3945
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145191"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..291
                     /locus_tag="VGD38_18925"
     CDS             <1..291
                     /locus_tag="VGD38_18925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730167.1"
                     /translation="RADVILCRDCLIHFSNKHITATIKNFKRSGSTYLLTNTYPRWSR
                     NENIRTGDFRYVNLLAAPFNLPPPITQIEEKLPEEREQFFGKTLALWKLADL"
     gene            complement(293..1405)
                     /locus_tag="VGD38_18930"
     CDS             complement(293..1405)
                     /locus_tag="VGD38_18930"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0730168.1"
                     /translation="MRALRILITNHFLRGRTGSELYVCELATSLLRRGHTPIVYSPQL
                     GPTARELRDATVPVIDNLDAISSPPDLIHGQHHVETMAALLRFPDTPAVFFCHGWLPW
                     EETPPKHPRILHFVAVDDTCRDRLVCESGVPEERVSVILNSVDVDQFLPRAPLPPKPA
                     RALVFSNGAAHVDAVREACRRTQLTLDVIGAEAGSVSTRPQDVLGQYDIVFAKARCAL
                     EALAVGSAVVLCDTVGAGPMVTTREVDQLRRLNFGVRTLQGNVDPDVLEKEIARYDAA
                     DAAEVSRRIRNGAGRDAAIDQVVALYHDVVSEFAVTARDKDAEARAEAVYLQQLALHL
                     EEQRNRLLNSQTFRLRQRLLNLPIAGTLFRKLVRKL"
     gene            complement(1384..2319)
                     /locus_tag="VGD38_18935"
     CDS             complement(1384..2319)
                     /locus_tag="VGD38_18935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730169.1"
                     /translation="MPLPFRRAALVVAHPSHELRVHGWLEQARPYVCILTDGAGRSGE
                     PRLSRTSEVLARVGATQGVIYGRLTDLEVYAAILRGDSELFAGLVEELAQAFVTEQID
                     YVAGDAAEGYSVAHDICRVMIGAAVERAKHEHDHHVANFDFAVVGAPPENLGNEDIRV
                     ELDDAAYTRKVSAALAYTPKLANDVEAALNGAPFQGIRRFSEPQLAGQVDVELSASVL
                     EELESRTLLKAQLRDIVEGVPLDAFRVECLRAVDNKMGTHWTNGPLFYELYGDKLVAA
                     GRYQKAIYYREHMLPLAEAIRARTEKRELCVRSAS"
     gene            complement(2373..3317)
                     /locus_tag="VGD38_18940"
     CDS             complement(2373..3317)
                     /locus_tag="VGD38_18940"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF021616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY0730170.1"
                     /translation="MTSPSVSVIIPAYQVAPYIAEALDSVFAQTVTDLEVIVVNDGSP
                     DTEELERELAPYRDRIRYVRQENRGAGAARNRGVQDAHGEFLAFLDGDDLWLSDYLEK
                     QLKFAREGEYDLVYADALLFGESPVAGKTYMQTAPSEGPVTFISLLRNDCNVITSGVV
                     ARRLTLIEAGLFDESLRNAQDFEMWTRMAKRGARLAYQRKVLLRYRCREGSLSGDEMN
                     RLTREVRVYRHIAETYDLTPAEKAELSRAMELQEAAVALADGKIRLLGERFDEARVSF
                     ERAHRVLGGWKLGAAVVMLRVAPRLLHRLARQRLTTQF"
     gene            complement(3322..>3945)
                     /locus_tag="VGD38_18945"
     CDS             complement(3322..>3945)
                     /locus_tag="VGD38_18945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730171.1"
                     /translation="ERRLDAAMNHLAAVPANEPPGLDVLTELAQAWGDDGFRAVGGYL
                     EEVTRWAAEARGPVLEIGSGLTTLILGSVAGRRGLPVWTLEHHPEFFRNTEAKLKRYK
                     LTNVHLTLAPLRDYGDFYWYDPPLNELPRDFSLIIADGPPGDVKGGRFGLLPVLRSHF
                     ASGAVVLLDDAERPQEKAVLQKWASEYGLTHESHARDGKAWAICSFQ"
BASE COUNT          798 a         1221 c         1157 g          769 t
ORIGIN      
        1 cgcgccgacg tcattctgtg ccgcgactgc ctcattcatt tctcgaacaa gcacattacc
       61 gccaccatca aaaacttcaa acgcagcgga tcgacgtacc tgctcacaaa cacgtacccg
      121 cgctggagcc gtaacgagaa cattcgcacc ggagactttc gttacgtcaa cctgctggcg
      181 gctccgttca accttccacc accaatcaca cagatagaag agaaacttcc cgaggaacgc
      241 gaacagttct tcggcaagac actcgcgctt tggaagcttg cagatctgtg agttagagct
      301 tgcgaacgag cttacggaag agcgtgccgg caatcggaag gttgagcagg cgttgacgta
      361 atcgaaaggt ttgcgagttc agcagacggt tgcgctgttc ttcgagatgc agtgcgagct
      421 gttgtagata gaccgcttca gcacgcgcct cggcgtcctt gtcgcgcgcg gtcaccgcaa
      481 actcactcac gacatcatgg taaagcgcca cgacctgatc gatggccgca tcgcgtccgg
      541 cgccgttgcg aatgcgtcgc gacacttcgg ctgcatcagc cgcatcgtaa cgcgcgatct
      601 ctttttccag cacatccgga tcgacgtttc cctgcaacgt acgcacgccg aagttcaaac
      661 gccgaagctg gtccacttca cgagtggtta ccatcggtcc ggcgccgacc gtgtcgcaaa
      721 ggaccacggc cgaaccgact gccagcgcct cgagcgcgca acgcgccttc gcaaacacga
      781 tgtcgtattg gcccaacacg tcctgcggcc gcgttgaaac actgcctgct tccgcgccga
      841 tcacgtcgag cgtcagttga gttctccggc aggcttcacg aaccgcgtca acgtgcgccg
      901 ctccgttgct gaacacgagc gcccgcgcgg gcttcggcgg cagcggcgcg cgcggaagaa
      961 actgatcgac gtcaactgaa ttgaggatca ctgaaacgcg ttcttccggc acgccgcttt
     1021 cgcaaacaag ccgatcccgg cacgtgtcgt ccaccgcgac gaagtgcaga atgcgcgggt
     1081 gcttcggcgg cgtctcttcc cacggcagcc agccatgaca gaagaacacc gcgggcgtgt
     1141 cgggaaaacg aagtaacgcc gccatcgttt cgacgtggtg ctggccgtga atcagatccg
     1201 gcggagacga gatcgcatcg aggttatcga tcacgggcac agtcgcatcg cgaagctcac
     1261 gtgcggttgg tccaagctgg gggctgtaga cgatgggcgt gtgtccgcgg cgcaggaggc
     1321 tcgtcgccaa ctcgcagacg taaagttccg acccggttcg accgcgcagg aagtggttgg
     1381 tgattaagat gcggagcgca cgcaaagttc tcgtttttcc gttcttgccc gaattgcttc
     1441 ggcgagggga agcatgtgct cgcggtaata gattgccttt tggtaacgcc cggcggcgac
     1501 gagtttatcg ccgtagagct cgtaaaagag aggaccgttg gtccaatgcg ttcccatttt
     1561 gttgtcgaca gcgcgcaggc actcgacacg aaaagcgtcg aggggaacgc cttctacgat
     1621 gtcgcgcagt tgcgccttga gcagtgtgcg tgattcgagc tcttcgagaa ccgaagcgct
     1681 cagttcgacg tccacttgac cggccagttg cggctcggaa aaacgacgga tgccctgaaa
     1741 cggcgcgccg ttgagcgcgg cttcgacgtc gttcgcgagt tttggagtgt aggccagcgc
     1801 ggcactaacc tttcgcgtgt atgcggcgtc gtcgagttcg acacggatgt cttcattccc
     1861 gagattttca ggtggagcac cgacaacggc aaagtcgaaa ttcgcgacgt ggtgatcgtg
     1921 ctcgtgttta gcgcgttcga cagccgcgcc aatcattacg cggcagatgt cgtgggccac
     1981 gctgtaacct tcagcagcgt cgccggcgac gtaatcgatc tgctctgtca cgaacgcctg
     2041 ggccagttct tcgaccagtc cggcgaagag ttcggagtcg cctctgagta tcgctgcgta
     2101 aacttcgaga tcggtgagcc ggccatagat cacgccttgc gttgcaccga cgcgcgcgag
     2161 cacttcgctt gttcgcgaaa gtcgcggctc gccggagcgg ccggcgccgt cggtaagaat
     2221 gcaaacgtag ggacgcgcct gttccaacca cccatgcacg cgcaattcat gacttggatg
     2281 cgccacgacg agcgcagccc gacggaaggg gagcggcatt cgccacttgt accacaaatt
     2341 acgcggattg ttgaaagaat gtgattgtgt gactagaact gagtcgtgag acgttggcgc
     2401 gcgagcctgt gcaacaagcg cggagcaacg cgcagcatca ctacggcggc tcccaacttc
     2461 cagccgccca acacacgatg cgcgcgttcg aacgagacgc gcgcttcgtc gaagcgttct
     2521 ccgagtaaac ggatctttcc gtcggcgagt gcgactgccg cctcctgcaa ctccatcgcg
     2581 cgcgacagtt ccgccttctc cgcaggcgtc agatcgtaag tctccgcgat gtgccggtag
     2641 acacgtacct cgcgcgtgag gcggttcatc tcgtcgccgg acaaactgcc ttcgcgacag
     2701 cgataacgca gcaacacttt ccgctggtac gcgagccggg cgccgcgctt cgccatgcgc
     2761 gtccacatct cgaagtcctg tgcattgcgc aggctctcgt caaacagtcc cgcctcgatg
     2821 agcgtgagac gacgcgcgac cacgcccgaa gtgatcacgt tgcagtcatt gcgcaggaga
     2881 cttatgaacg tgactggtcc ttccgagggc gcagtctgca tgtaagtctt cccggccaca
     2941 ggcgattcgc caaacagcag cgcgtcagcg taaacgaggt cgtactcacc ttcacgcgcg
     3001 aacttcaact gcttttccag gtagtcggac agccacagat cgtcgccgtc gagaaaggcc
     3061 agaaactcgc cgtgtgcgtc ctgcacgccg cgattgcgtg cggcgccggc gccgcgattt
     3121 tcctgccgaa cgtaacggat gcgatcgcga tacggcgcga gttcgcgttc gagttcttca
     3181 gtgtcgggag agccgtcgtt gacgacgatg acttcaagat cggtgacggt ttgcgcgaac
     3241 acggagtcga gcgcctccgc gatgtacgga gcgacttgat atgccggtat gatgacgctg
     3301 accgaaggac tcgtcatggc ctcactggaa cgaacagatg gcccaggctt ttccgtcgcg
     3361 cgcgtgcgac tcgtgcgtca ggccgtattc actcgcccat ttctgcaaca cagctttctc
     3421 ctgcggccgc tcggcgtcgt ccagcaaaac gaccgcacca cttgcgaaat gtgacctgag
     3481 caccgggagc agaccgaatc gcccgccttt tacatcaccg ggcggaccgt ctgcaatgat
     3541 caaactgaaa tctctgggca actcattaag gggtggatca taccagtaga agtcgccgta
     3601 gtcgcgcagc ggcgcgagtg tcaggtgaac attcgtcagt ttatatcgct tcagctttgc
     3661 ttcggtgtta cggaagaact ctggatgatg ctccagcgtc cacaccggta agccccttcg
     3721 accggccacc gatcctaaaa tcagcgtcgt cagtccgctg ccgatttcca gcaccggtcc
     3781 gcgagcttca gccgcccaac gcgtgacttc ttccaagtat ccaccgaccg cgcggaaacc
     3841 gtcatctccc cacgcttgcg cgagctccgt cagcacgtcg agcccgggcg gctcattcgc
     3901 cgggaccgcg gcgagatgat tcatcgcggc gtccaggcgg cgttc
//
LOCUS       DASWTX010001245         2002 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_321895, whole genome shotgun sequence.
ACCESSION   DASWTX010001245 DASWTX010000000
VERSION     DASWTX010001245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2002
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321895"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..879
                     /locus_tag="VGD38_18950"
     CDS             <1..879
                     /locus_tag="VGD38_18950"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY0730172.1"
                     /translation="YWLNLLREVRKYDVIHIFSASYLSFLIAPTPAILASKLYGKKIV
                     LNYHSGEAEDHLRRWRRSTIPILNLTDAIAVPSEYLVRVFANFGLKATAIFNIIELDK
                     FVFRERNQLRPVFLSNRNLEAHYGVDSVLRAFALIQKQIPEAVLTIVGDGSQRQSLET
                     LAAELNLKHTAFTGRIEHDEILAYYANADVFLNASRIDNQPLSILEAFACGLTVVTTN
                     AGGIPDIVTDGETGFVVDIDDHQTLAQRAMQLLVNDNIAATMALKAREECRKYTWEVV
                     CDRWLCLYRKIVENNS"
     gene            1078..>2002
                     /locus_tag="VGD38_18955"
     CDS             1078..>2002
                     /locus_tag="VGD38_18955"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEY0730173.1"
                     /translation="MFAVVPLRVMSWNVQFGEGTDAVTNYDRTASWIARNNPDLVGLC
                     EMPAGNVPTLVALLTAKTGRTWFPHFVPKYTGTDEGNLILSRYPIVSVNGKFLSANRS
                     IAQATINVSGRNISFFATHLDDAASSNRVVEVGELKSWAGNFSGPRIFTGDFNGGPDT
                     SEGLAMTASYTDSWTASMSLGTAASYPDNPVGMHTRTRRGRIDYVFFGGSGLSIRSAK
                     IPDSRDLNNTNVVVRLGTADDKGVRPSDHNAVIADFDLNVDGTEPTPTPASTPTPTPT
                     PTPTPTATPIPTAPPVLLTDPSSNRAVALRST"
BASE COUNT          466 a          583 c          515 g          438 t
ORIGIN      
        1 tactggctca acttgctgag agaagtgcgg aagtatgatg tgattcacat cttctcggct
       61 tcgtatcttt cattcctaat cgcgcccaca cccgcgattc tcgcgagcaa actctacggc
      121 aagaagatcg tgctgaacta tcacagcggc gaggctgaag atcacttgcg tcgctggcga
      181 cggtccacga tccccatctt gaatctcaca gatgcgatcg cagttccgtc agagtacctg
      241 gtccgggtct ttgctaattt cggactcaaa gcgacagcga tcttcaatat catcgagctc
      301 gacaagtttg tctttcgcga acgaaatcaa ctgcggccgg tattcctttc gaatcgtaat
      361 ctcgaggctc attacggcgt tgattccgtg cttcgcgcat ttgcgttgat ccaaaaacag
      421 atcccggaag ccgtgctgac gatcgtcggc gacggcagtc aacgtcaatc actcgaaaca
      481 ctcgccgcgg aactgaactt aaaacatacc gcgttcaccg gacgtattga acacgacgag
      541 atcctcgcgt attacgcaaa cgcagacgtg tttctcaacg cctcacgcat cgacaaccaa
      601 ccactttcca tcctcgaagc attcgcctgt ggcctaaccg tcgtcaccac gaatgcgggc
      661 ggcattcccg acatcgtcac cgatggagaa acgggttttg tcgttgacat cgatgatcat
      721 caaacgttgg cccaacgcgc aatgcaatta cttgtcaacg acaacatagc cgcaacaatg
      781 gccctaaaag cgcgcgaaga atgccgcaaa tatacgtggg aagtagtttg tgatcgttgg
      841 ctgtgtttgt atcgaaaaat agttgaaaat aattcttgac agagctactt accaccgcta
      901 gcttttccct cggcttaccg gaagctttcc cccgcgcttc caacccgctt cagtagtacc
      961 cggccaataa ccaaagagga gtttgtttta gtgaggctgt tgacctgtgt ctgcgctatc
     1021 tttctgttct taattcttaa cactgcattc cccagtcctt cgagcaaagc tgcaccgatg
     1081 tttgcagttg ttccactcag ggtgatgagt tggaacgtgc agttcggaga agggaccgat
     1141 gcagttacaa actacgatcg aacggcgtcc tggatcgccc gtaacaatcc ggacctggtt
     1201 ggactctgtg agatgcccgc gggcaacgtg cccacgctgg ttgcgttgtt gacggcgaaa
     1261 accggacgca cctggttccc gcattttgtg ccgaagtaca ccggcactga cgaaggcaat
     1321 ctcattcttt cgcgttatcc aatcgtttcc gtcaatggga agtttctgag cgccaacaga
     1381 tcgatcgcgc aagcgacgat caacgtgagc ggacgaaaca taagcttttt tgcgacgcat
     1441 ctggacgatg cggcgtcgtc gaaccgtgtg gtcgaagtcg gagaactgaa gagttgggcc
     1501 ggcaattttt cgggaccacg gatttttacc ggcgacttta acggtggacc agatacttcc
     1561 gaaggtctgg caatgaccgc gagttacaca gactcgtgga cggcgagcat gagtctcggg
     1621 accgcggcct cgtacccgga caatccggtg ggcatgcaca cgcgaacgcg gcgcggaaga
     1681 atcgattacg tgttcttcgg cgggtccgga ctcagcatcc gtagcgcgaa gatccccgac
     1741 agccgtgacc tgaacaatac gaacgtcgtc gtcaggttgg gaacagcgga cgacaaaggc
     1801 gtgcggccgt cggaccacaa tgccgtgatc gccgatttcg acctgaacgt cgacggcacg
     1861 gagccgacgc cgacgccagc ttcgaccccc accccgacac caacgccaac cccgacccca
     1921 acagcgactc cgatcccgac cgcgcctcct gtcttgctaa ccgatcccag ctcgaatcgc
     1981 gcggtagcgc tgcgctcgac ac
//
LOCUS       DASWTX010001246         4330 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_236086, whole genome shotgun sequence.
ACCESSION   DASWTX010001246 DASWTX010000000
VERSION     DASWTX010001246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4330
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236086"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..707
                     /locus_tag="VGD38_18960"
     CDS             <1..707
                     /locus_tag="VGD38_18960"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEY0730174.1"
                     /translation="DTGIDRNPADQVEVKRPDDQRDRYLSEDELRRLKLALDEKVYRK
                     GTKDFNKTFCRLRLIVLIAVTTGMRMSEIFGLTRSDVMYSEGLLAVRAKLKGGKMRYV
                     PMPPELADELRRFMPQPANNVLYIAGNNDERIFPPKKDAKGERQRVEGSFDDLLERAG
                     IKDFRFHDLRHTFASWYMMNGGDLYELAKILGHSNIKMTERYAKLAKHHIARTSNTAR
                     EMWKLLEPIGKKEAVG"
     gene            complement(779..854)
                     /locus_tag="VGD38_18965"
     tRNA            complement(779..854)
                     /locus_tag="VGD38_18965"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(819..821),aa:Phe,seq:gaa)
     gene            complement(1208..2536)
                     /locus_tag="VGD38_18970"
     CDS             complement(1208..2536)
                     /locus_tag="VGD38_18970"
                     /inference="COORDINATES: protein motif:HMM:NF005557.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-deoxyadenosine deaminase"
                     /protein_id="HEY0730175.1"
                     /translation="MSSILIKNGTLVTMNPANRIIRGDLLINHGRIVEIGVFDQTADV
                     VIDAGGCAVIPGFVQTHIHLCQTLFRGAADDLALIDWLKKRVWPMEAAHTEASIAASA
                     RLGIAELIKGGTTCALTMETVNHTSQVFEVVEETGFRATVGKCMMDKGAEVPKPLQEE
                     TVRSIEESVALLETWHGQADGRIRYCFAPRFAISCTRELLERVGELARERGVMVHTHA
                     SENRTECAMVEQESGMRNINYLQSVGVAGRHVALAHCVHLSNEEIRILKSTGTNVAHC
                     PSSNLKLGSGIAPITKLLEEGISVSLGADGAACNNRLDMFTEMRTAALLQKALHGPEV
                     LAAGRVLRMATIDGARALGLDAEIGSLELGKRADVAVVNLDRLHTSPESDIVSRLVYA
                     AAASDVQSVIIDGRVVMGDRELLTIDEAETVAEANAQSELLRSRAGLATD"
     gene            complement(2605..3654)
                     /gene="recA"
                     /locus_tag="VGD38_18975"
     CDS             complement(2605..3654)
                     /gene="recA"
                     /locus_tag="VGD38_18975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEY0730176.1"
                     /translation="MADDRMTGDRGRAIEAALANIEKKFGKGSIMRLGEREVSDIPAI
                     STTSLSLDAAIGVGGVPRGRIVEIYGPESSGKTTLALHIVAEAQKAGGVAAYIDAEHA
                     MDADYAGKLGVDVDQLLISQPDSGEQALEIAEALVRSNGVDVIVVDSVAALVPRAELD
                     GEMGDSLPGLQARLMSQALRKLTAIVAQSNTCFIFINQIREKIGVMFGNPETTTGGRA
                     LKFYSSLRLDIRRIGAIKDGDRVVGNRTKVKVAKNKVAPPFRECEFDIMYGEGISREG
                     DLLDLAVTNRVVEKSGAWFSYKGERLGQGRENAKTALRENADILKRIDREVKVKLGIP
                     VREEPEPSTAKAASK"
     gene            complement(3910..>4330)
                     /gene="trpA"
                     /locus_tag="VGD38_18980"
     CDS             complement(3910..>4330)
                     /gene="trpA"
                     /locus_tag="VGD38_18980"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR00262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEY0730177.1"
                     /translation="DGVLVTDLSPEEAGEFESELRANDLDMIFLIAPTSTDERLQLVA
                     QHARGFIYSVSRAGVTGVRTSVSVEAEKLVNRMREFSPLPIAVGFGISTPGQVKDVQR
                     YADAVVIGSAIVSEIERLQGATATASRIGEFIRGLSD"
BASE COUNT          978 a         1302 c         1155 g          895 t
ORIGIN      
        1 aggacaccgg tatagatcgg aatcccgccg atcaggtgga agtcaaacgg ccagacgatc
       61 agagggaccg ctacttatcc gaggatgagc ttcggagact caagctggcc ttggatgaaa
      121 aggtctatcg caaagggacg aaggatttca ataagacgtt ttgtcggctc aggctgatag
      181 tgttaattgc cgttacgacc ggcatgcgga tgtcagaaat cttcggcctt acgcggtctg
      241 atgtgatgta cagcgaagga ttgttggcgg taagagcaaa gctaaagggc ggcaagatgc
      301 gttacgttcc gatgcctcct gagctcgccg acgaattgcg gcgattcatg cctcagcccg
      361 ctaacaacgt tctgtatatc gcaggaaata acgacgagcg gatctttcct ccgaagaagg
      421 acgctaaggg tgaacggcaa cgcgtggaag ggagttttga cgatctactc gaaagagccg
      481 ggatcaaaga cttccgtttc catgatcttc gtcacacgtt tgcatcgtgg tacatgatga
      541 acggtggcga cctttacgag ttggcaaaga tattgggcca ctcgaatatt aagatgaccg
      601 agcgttatgc gaagctggcg aagcaccata ttgccagaac cagcaacacc gcccgcgaaa
      661 tgtggaagtt acttgaaccg atcggcaaga aagaagccgt agggtaaacc gatgtacgcg
      721 tattgtacgc gcgacgatat ttgagtgttt ttggctatcg ctaagttgtt gaatttattg
      781 gtggccaggg acggaatcga accgccgacg ccggcctttt cagggccgcg ctctaccaac
      841 tgagctacct ggccagatgg tgtgcaaaag aggcgtagta taggaatgga gttgaaaaga
      901 tgtcaactaa gggcgcttca taacgaccgc caaggagact gagggaagcc tagttgttga
      961 ttgtaaggaa tttgtcggat tcgtcacaaa aagtcgttga cggaatcgga gccgggtgta
     1021 taattcgaaa cgttgcgggt ggggctgatg cccaaacgtc agctagtcga aaagacgcca
     1081 tccaattcaa aattgatagt gcccgccagt gccagctcgg ccgccgatcg cgccccccgc
     1141 agtcgctacc ttcgagctgg cacagctctt ttaaagccat ccagccaaaa tacccactaa
     1201 atctgtgtta atccgtggct aaaccagctc tcgaccgcag caattcgctc tgcgcgttgg
     1261 cttccgcgac cgtttccgcc tcgtcgatgg tcaacaactc ccggtctccc atcaccactc
     1321 gcccatcgat aattacgctc tgaacgtcgc tcgccgcggc cgcataaacc agcctcgaga
     1381 cgatgtccga ctcgggagac gtgtgcaacc gatcgagatt gaccacggcc acatccgccc
     1441 gctttccgag ctccaggctc ccaatctcag cgtccagccc cagcgcccgc gcgccgtcga
     1501 ttgtggccat tcgcagcacc cggcccgcag ccaatacttc cggtccatgc aacgccttct
     1561 gtagcagtgc agcggtacgc atctcggtaa acatgtcgag ccggttgttg cacgccgcgc
     1621 cgtccgcacc gagcgagacc gagatgccct cctccaacaa tttcgtgata ggcgcgatgc
     1681 ccgagccgag cttgagattc gacgaaggac aatgggccac gttggtcccg gtggacttca
     1741 aaatcctgat ctcttcatta ctcaggtgaa cgcaatgggc caacgcgacg tggcgcccgg
     1801 caacaccaac gctctggaga tagttgatat tgcgcatgcc cgattcctgt tcgaccatcg
     1861 cacactcggt gcgattctcc gacgcatgcg tgtgaaccat cacaccacgc tcgcgcgcca
     1921 attcgccaac tcgttccagc aactcgcgcg tgcaactgat cgcaaacctc ggcgcgaaac
     1981 agtaacgaat acgcccatcg gcctggccat gccacgtctc gagcaatgca accgactctt
     2041 caatcgatcg cacagtctct tcctgcaaag gcttcggcac ttcagcacct ttgtccatca
     2101 tgcacttccc gacagtggcc ctgaaacccg tctcctcaac gacttcaaaa acctgcgacg
     2161 tgtgattaac cgtctccatc gtcagcgcac aggtcgtgcc gcccttgatg agctccgcaa
     2221 tacccaaacg cgccgaagcc gcgatcgacg cttccgtgtg cgcagcctcc atgggccaca
     2281 cacgtttctt cagccagtcg atcaaggcga ggtcgtcggc agcgccgcga aagagtgttt
     2341 ggcaaagatg aatgtgagtc tgaacaaagc cggggatcac agcgcacccg ccggcatcaa
     2401 tcacgacgtc cgcagtctga tcgaagacgc caatctcgac gatgcggccg tgattgatca
     2461 aaaggtctcc gcgaatgatc cggttcgcgg gattcatcgt gacgagcgtg ccgtttttta
     2521 tgaggattga agacataagc cacaaagaga cgctcggcga gcataaagca tcctcgccga
     2581 gcgctcaatt gttttaacag aattctactt cgacgccgcc ttggcggttg acggctcggg
     2641 ctcttcacga accggaattc cgagcttcac tttcacttcg cggtcgattc gtttgagtat
     2701 gtccgcattc tctcgcaacg ccgtcttggc attctcgcgg ccctggccca accgttcgcc
     2761 cttgtaggag aaccacgcgc cactcttctc cacgacgcgg ttagtcaccg ccaggtcgag
     2821 cagatcgccc tcgcgcgaaa taccctcgcc gtacatgatg tcgaattcac actcacgaaa
     2881 cggcggtgca accttgttct ttgcgacctt cactttcgtc cggttgccaa ccacgcggtc
     2941 gccatcctta atggcgccaa tgcgacgaat atccagtcgc aaagaagagt aaaacttgag
     3001 cgcgcggccg ccggtagtcg tttccggatt gccaaacatc acgccgatct tctcgcggat
     3061 ctgattgatg aaaatgaaac aggtgttgga ctgcgcgacg atcgccgtga gcttgcgcag
     3121 cgcctgcgac atcaaacgcg cctgcaaacc aggcaacgaa tcacccattt caccgtcgag
     3181 ctcagcacgc ggcaccagcg ccgccaccga gtcgaccaca atcacgtcga cgccattcga
     3241 gcgaaccagc gcctcggcaa tttcaagcgc ctgctcgccg gagtcgggtt gtgaaatcag
     3301 caactggtcg acgtcgacgc cgagctttcc cgcatagtcg gcatccatcg cgtgttcggc
     3361 gtcgatataa gccgcgactc cgccggcttt ctgggcctca gcgacgatgt gcagagcgag
     3421 cgtagtctta cccgaactct ccggcccata gatctccacg atacgtccgc gcggaacgcc
     3481 gccaacacca atcgcggcgt cgagactgag cgaagtggtc gaaatggcag gtatgtccga
     3541 cacctcgcgc tcgccgagac gcataatcga tcccttgcca aacttctttt caatatttgc
     3601 taaagcggct tcgattgccc tgccgcggtc tccagtcatc cggtcatcag ccatggcata
     3661 catctctttc ttccgctcct cttctcgcag tcgtatcggc caaatgctcg ccagtaagcg
     3721 gagagcatag cacaacgaga gcgggaatgg aacagtgttt cacgcgtgca acacgtcttt
     3781 tttccagagg gtgaggtttc gaaaaacgac ttccaagcgc gccgccgcag ccctctctgc
     3841 gtctttcttt ccgtgaggaa acgcgcccgc gcgcaagaat actccagcgc ccgtgatttc
     3901 gtcgagcagc taatcactta ggcctcggat aaactcacca atcctcgacg cagtcgcggt
     3961 cgctccttgc agtcgctcta tttcggaaac gatggccgaa ccgatcacga ccgcgtcggc
     4021 gtaacgctgg acgtctttga cctggccggg cgtggagatg ccaaaaccga cggcgatcgg
     4081 taacggggaa aactcgcgca tgcggttgac gagtttctcg gcttcgacgc tgacgctggt
     4141 gcgcacgccg gtaacgccgg cgcgagagac cgagtagatg aatccgcgcg cgtgttgcgc
     4201 cacgagttgt aagcgttcgt cggtggaagt cggcgcgatc agaaagatca tgtcgagatc
     4261 gtttgcgcgc agttcacttt caaactcgcc tgcttcttcc ggactcagat ccgtcacgag
     4321 gacgccatca
//
LOCUS       DASWTX010001247         1791 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_427584, whole genome shotgun sequence.
ACCESSION   DASWTX010001247 DASWTX010000000
VERSION     DASWTX010001247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1791
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427584"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(174..746)
                     /locus_tag="VGD38_18985"
     CDS             complement(174..746)
                     /locus_tag="VGD38_18985"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY0730178.1"
                     /translation="MKKRLQWKLRKDVSNANPLRVMLGAGPYQYDGWFQTDKDLLDVT
                     SPEDWSIVFAPGSIDSLLSEHMLEHLSEDEARNALAECYRYLKPKGLFRLAVPDGYRR
                     DPAYVKEVAPPNDGHKMLYNIDSLSGLLQSVGFQTTPLEYFDAQEQFHATAWDQNDGM
                     ILRSVRFDTQQAFQRDGLFYTSLIIDARKQ"
     gene            complement(821..1633)
                     /locus_tag="VGD38_18990"
     CDS             complement(821..1633)
                     /locus_tag="VGD38_18990"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY0730179.1"
                     /translation="MRELVLGGHGLIGSTLVHALEERGSSVTSLDLKNGHDLRQVDDQ
                     PFRECDRVWFLAWDTGGARYIEAVDRQHEQYKHNCELTVRVLDALARTRTPFLFVSSQ
                     LAGLPTAYGTTKLMAACWSLQLGGKVARLWNTYGWEHPDVRSHVVTDLVLSGLTRGVV
                     TCMTDGAERRRFIYKTDCVDALVKLFDSPQQSAEVAGPEWVTIRQVGEEIARQLGVEF
                     QAGSATGSEVMIDPRELLPDWQPRVTLTEGISRVIADARAYLPTAARVNAEH"
BASE COUNT          357 a          528 c          505 g          401 t
ORIGIN      
        1 agatcgatga tgctgagccg gcgcatcgcc agcagcacgt ggttgtcgag aaattctccg
       61 gaaccgtcag gaccgcgatg ggtgaggctc gagtttgcgc tgcgaacgcc ggcgatctcg
      121 gcgggcgttg ttggcgcttg agtaatgatt ccggcgatac cgcacattcc tggctactgc
      181 ttcctcgcgt cgatgatcag cgaagtgtaa aaaagaccgt cgcgctgaaa cgcctgctgc
      241 gtgtcgaaac gaacggaacg caagatcatg ccgtcgtttt gatcccacgc cgtggcgtga
      301 aactgttcct gcgcgtcgaa gtattcaagc ggagtcgttt gaaacccgac actctgaagc
      361 agcccgctga gcgagtcgat gttgtagagc atcttgtgcc cgtcgttcgg cggcgccacc
      421 tctttaacgt acgccgggtc gcggcgataa ccgtcaggca ccgcgagccg aaagagtccc
      481 ttcggcttca ggtagcgata acactccgcg agcgcgttgc gcgcttcgtc ttccgacaaa
      541 tgttcaagca tgtgttcaga caacagcgaa tcgatcgagc ccggcgcgaa cacgatgctc
      601 cagtcctcgg gcgacgtcac gtcgagtaag tctttgtcgg tttgaaacca accatcgtac
      661 tgatatggac cagcgccgag catcactctg agtggatttg cattgctgac gtctttacgt
      721 aatttccact gcagcctttt cttcatcagg cgtttgtaaa cgctggcctg ggttacagcg
      781 cggggggcaa attttgtcag gatcatagtt cacgggggat tcagtgttca gcgttgacgc
      841 gcgctgctgt cgggagatac gcgcgagcat cggcgatcac gcgcgagatt ccttcagtca
      901 gcgtcacgcg cggttgccag tcaggtaata gctcccttgg atcgatcatt acttctgaac
      961 cggtagcact tcccgcttga aattcgacgc cgagttggcg cgctatctct tcgccgacct
     1021 ggcgaatcgt gacccactcc ggaccggcaa cttccgccga ttgttgtggg ctgtcgaaca
     1081 acttcactaa tgcatctacg caatctgttt tgtagatgaa ccggcgtcgc tcggcgccgt
     1141 ctgtcatgca cgtcactacg ccgcgcgtga gtcctgatag taccagatcg gtaaccacgt
     1201 gactgcgcac gtcaggatgt tcccagccgt acgtattcca cagccgcgcg actttcccgc
     1261 cgagttgtaa cgaccagcac gcggccatca atttcgtcgt gccgtaagcc gtcggcaggc
     1321 cggcgagttg tgaactgacg aagagaaacg gcgtgcgtgt gcgcgcgagt gcgtcgagca
     1381 cgcgcacggt cagttcgcag ttgtgcttgt attgttcgtg ttgccgatcg acggcttcga
     1441 tgtaacgcgc gccgccggtg tcccacgcca gaaaccaaac gcgatcacac tcgcgaaacg
     1501 gttggtcgtc gacctgtcgc aggtcatgac cgtttttcaa atcgagcgaa gtaacggaag
     1561 acccgcgctc ctccaacgca tggaccagtg tcgatccgat caacccgtgc ccacccagca
     1621 ccagctctcg catgtttatt tagtctccag cctccaaacg cgctctgcga tctgcacttc
     1681 gttacagtta ccaagtcccc agtcgtcagg attgtgataa ggcactcctt cgggcgtcgc
     1741 cgcttctccg tgatggggct ttacaccttc agtacacgaa gacggatgcg t
//
LOCUS       DASWTX010001248         6336 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_254687, whole genome shotgun sequence.
ACCESSION   DASWTX010001248 DASWTX010000000
VERSION     DASWTX010001248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6336
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254687"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1123)
                     /locus_tag="VGD38_18995"
     CDS             complement(<1..1123)
                     /locus_tag="VGD38_18995"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY0730180.1"
                     /translation="MPGLRSVTAGIWVRRGSRHESPELNGICHFIEHAVFKGTRLRTA
                     RDIAVETDRLGGHLDAYTTHEMTGFTTKVADTALSQAMDLLADLVSNPRFDQEDLERE
                     QKVILEEMKMVEDTPDELLGELFNAAYFPNQPLGRPIEGTRETVPTFDHKTTVAFHAR
                     EFSYSNLVVAAAGNVDHDRLVELVGRSFNGCESGAGARPHTLDGRPRPAAPIMIEQKN
                     ELEQAHLVLATPWPSALSEERYAASLLASVIGGGTSSRLWQKIREERGLAYSVGAAGS
                     AFSDIGVFNVYAGTSPDQLDEVLELSLKELREVVRNSVTEEELRIAKDQAISSILLGL
                     ESSSARASTLARQEIIHGRRISPDIVIEKLRNATIEQLQE"
     gene            1442..3193
                     /locus_tag="VGD38_19000"
     CDS             1442..3193
                     /locus_tag="VGD38_19000"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0730181.1"
                     /translation="MRRVVGLSLSLLALVSLSAAPIEAGSSSKSLATISGIVTDNKGT
                     PLAGALVSLMREGAVKQSVKHTLTDRQGKFVAKVTPGRYGIKAIASGFNEVAFNAFEV
                     KAAEEVIYKFNLVPVGYGNTLPERRRDRDDVKWTLRSAQTRRSIFQVDEGEDPTVTAV
                     TDAENTTTDMSAASTQHAWMPRGYSPRAHGVIESYVGSNGFASSYVGFNFAVSTPISD
                     SVELIFSGQTGTDHAPERLEATTRFRLGDRHKIGVTASGARYEGPVWTPRPTEYADLA
                     GQISLRAVDEWIVRDGIVIVMGLDYSRFIGAGGAQSFTPRFGVQFDANARTRVKAAFA
                     SGGDEDGIQSVATFEDEQVVFRRQALRPVAFVDGQAVLERSHRLEFGIERVLDNSSNI
                     EATAFFDTTSGRGVGLMSFPSSAFSGEAGEMFATVANQQGSSRGVRVVYTRRLNRVWS
                     ASAAYAFGRGQRLSASGFASPAELFENGLFQTAALQLGAGFSSGTQVRTVFRFSPEAT
                     VFAIDPFAGRLGVYDPSLSIQVTQDLPSFGLPVRAEAILDARNLLDAQIASDNGEFMT
                     FVGTNRRSVRGGISVRF"
     gene            3349..6303
                     /locus_tag="VGD38_19005"
     CDS             3349..6303
                     /locus_tag="VGD38_19005"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0730182.1"
                     /translation="MKGSVLTTKAWFLLIGAALLITAGVLNFGQRARQETPAWDGVEW
                     VDTADGIIAKSIEKGSAADRAWMLPGDRLVGIALDPEARPDEVVNARDVQIYLDAARV
                     GGQLHYRMQRPSYPPETQNYWADLDNLGSIHRWTPRVIYINVIGLAYLLIGFFVLFRQ
                     GGSAPFVLHFATLCLVAFVFHFYTPTGTYRDLDLAIAFLKNSAFILFAPLFLHFCMLY
                     PTKQQLFANKRWRAIGLYVPAILLLLLAAFVFMPLGAFMYVQNLGARMGLQVTGVSEA
                     FVDTFYRVSFLHFIVGLTASATLLVKTYVTARNALIRQQMKWVVWGTVLAVAPFVLLY
                     GLGFMFGAASDRWLTDVAVLPLIAIPFAFGYSVLRYRLMDVELVVRRVFVYALTSIAI
                     ALLFGVVVYTGGLYAFGSDGFSSGEITLRVVAAVAAMAAIVMVAAPVKNFLQERVDRL
                     FYGERYDLRNSLLDFGRTLSATTALDPLLDSLVSRLQEVMNVGRVAIFIEDRQARDGY
                     AVARSVGLDGPLFVPTDFREMIRVRSAETGVVRADDLDLASDANVSARRSLHYYVPCV
                     VRGRMVAVIGLGRSVDGALLSSEDVEILRTVSGYVAVAIENSLLYKDQQERASELKLL
                     KEFNESIIESINVGLLAVDLEGRVTRLNSALEHMLDLRRDAAIGRRVENLFSEDFADT
                     LKQVLGKDGWHLQEIRNIYKLHTATRTNRALVLNIALAPLQDGQGQTGALVVIEDVTT
                     RISLEEQLQQREKLSSIGLLAAGVAHEVNTPLTGVSSYTQMLLAMLNENDPKHALLQK
                     VRTQAERATNIVNNLLNFSRTGSATEFCEVNVARVLDDTLQLLEPQMRRSQIEIVRSY
                     DDDAPLAYANAGKLQQVFTNLLLNARDAIPDGGRIVVSTSAADDGSIVAEISDTGIGI
                     APENVAKIYDPFYTTKGVGQGTGLGLAVTYGIVQEHAGHISVDSKPGDGTTFRITLPA
                     ARARARLQAVGD"
BASE COUNT         1221 a         1781 c         1923 g         1411 t
ORIGIN      
        1 cttcctgaag ctgttcgatg gttgcgtttc tcagtttctc aatcacgata tccggcgaga
       61 tgcggcggcc gtgaatgatt tcctggcgcg cgagcgtgct ggcgcgggcg ctcgatgatt
      121 cgagcccgag caggatggaa gagatcgcct ggtccttcgc gatgcgcagc tcttcttcgg
      181 tcacgctgtt gcgcacgacc tcgcgcaact ctttcaacga aagctccagc acctcgtcga
      241 gttgatccgg cgacgtgccg gcataaacat tgaacacgcc gatgtcggaa aaagcgctgc
      301 ctgcggcgcc gaccgaataa gccagcccgc gttcttcacg aatcttctgc cacaaacggc
      361 tcgacgttcc gccgccgatg accgacgcga gcagactcgc cgcgtaacgt tcctcactca
      421 aagccgacgg ccacggcgtg gcgagcacga gatgcgcctg ctccagttcg ttcttctgct
      481 cgatcatgat cggcgccgcg ggacgcgggc ggccgtcgag cgtgtgcggc cgtgcgccgg
      541 cgccactctc gcacccgtta aaagatctcc cgacgagctc aacgaggcga tcgtggtcga
      601 cgttacccgc cgcggcgacg accaggttgc tgtacgagaa ctcgcgcgcg tgaaaggcga
      661 cagtcgtttt gtgatcgaag gtcggtacgg tttcgcgggt gccttcgatg gggcgcccga
      721 gcggttgatt cggaaaatac gccgcgttga agagctcgcc gagaagttcg tcaggcgtgt
      781 cctcgaccat tttcatctct tcgaggatga ctttttgctc gcgttcgagg tcttcctggt
      841 caaaacgcgg gttcgagacg aggtcggcga gcagatccat cgcctgcgac aaggcggtgt
      901 ccgcaacctt tgtcgtaaaa ccagtcatct catgggtcgt ataagcgtcg agatgtcccc
      961 ccagacggtc ggtttccacg gcaatatcgc gggcagtacg aagccgcgta cccttgaaaa
     1021 cagcgtgttc gatgaagtga cagatgccat tgagctcggg tgattcgtgg cgcgagccgc
     1081 ggcgcaccca gatcccggcg gtcaccgacc tgagccctgg catgtgttcg gtcaggacgg
     1141 taatgccatt tgggagtctt gtagtttgca cttcgtcaat catcgaaaat cgtctagttg
     1201 gaaaccaaaa taagggtttt aggcaccgcg gttgaataag ggggcatgaa tcctagcacg
     1261 ccggaaagtg ggcggcaaat gacccgaaat accgcgcagt tcttgacagt atcaagggcc
     1321 tgaacgacaa tagttggcct attttttccg gttcccggta gtctcctcgg tgggaaccga
     1381 tggccccttc aatcccgaat cggcggccca gtgggactct tgtaggcgga ggtcgtaacg
     1441 catgagaaga gttgtcggtt taagcttatc cctactcgcg ctcgtttcac tatctgctgc
     1501 tccaatcgaa gcaggtagct cgagcaaatc actcgcgacc atctcaggca tcgttaccga
     1561 caacaaggga acaccgctcg ctggggcact cgtgtctcta atgcgcgaag gcgctgtgaa
     1621 gcaatcagtc aaacacacgc ttaccgatcg acagggaaag ttcgtcgcga aagtgacgcc
     1681 gggccgttat ggaatcaaag ccatcgccag cggattcaat gaagtcgctt tcaacgcctt
     1741 cgaggtgaaa gcggcggaag aagtgatcta caagttcaac ctcgtgccgg ttggctacgg
     1801 caacacactg cctgagcgcc gccgcgatcg cgacgacgtg aagtggacct tgcgatccgc
     1861 gcaaacgcgc cgctcaatat tccaggttga cgaaggcgaa gatccgacgg tcacagccgt
     1921 caccgacgct gagaatacaa ctaccgacat gagcgccgcg tcgacgcagc acgcgtggat
     1981 gcctcgtgga tattcaccga gagcacacgg cgtgatcgaa agctacgtcg gcagtaacgg
     2041 cttcgcttct tcgtacgttg gtttcaactt cgcagtctcg acacctattt cagattcagt
     2101 cgaactcatc ttctccggtc aaacaggaac cgaccacgcc ccggaacgcc tggaagcgac
     2161 gacgcgtttt cgcctcggcg atcgacacaa gatcggcgtg actgcttcgg gcgcgcgtta
     2221 tgaaggaccg gtttggacgc cgagaccgac ggagtatgcc gatctcgctg gtcaaatttc
     2281 gttgcgtgcg gtcgatgagt ggatcgtgcg cgacgggatc gtgatcgtga tgggcctcga
     2341 ctactcgcgt ttcatcggcg cgggcggcgc gcagagtttc actccgcggt tcggagttca
     2401 gtttgacgcg aacgcgcgca cacgcgtgaa ggctgcgttt gcttccggtg gtgacgaaga
     2461 cggtattcag agtgtcgcga cgtttgaaga cgagcaagtt gtatttcgcc gccaggcttt
     2521 gcggcccgtt gctttcgtcg atggacaagc ggtgctcgaa cgcagtcacc ggctcgagtt
     2581 cggaattgag cgcgtgctcg acaacagttc gaacatcgaa gcgactgcgt tcttcgacac
     2641 gacgagcggc cgcggtgttg ggttgatgag ttttccgtca tccgcattct cgggtgaagc
     2701 gggtgagatg ttcgcgacgg ttgcgaacca gcaaggatct tcgcgtggcg tgcgcgtcgt
     2761 ttatacacgc cgtttgaatc gtgtctggag tgcttcggcg gcttacgcgt ttggccgcgg
     2821 tcaacgtttg tcagcctccg gttttgcaag ccccgccgag cttttcgaaa acgggctgtt
     2881 tcaaacagca gccttgcaac tcggcgcggg tttcagcagt ggtacacaag tgcgaaccgt
     2941 cttccgcttc tctccggaag cgacggtctt cgcgatcgat ccctttgccg gcagactggg
     3001 cgtttacgat ccctctctga gcattcaagt cacacaggat ctgccgagtt ttggtttgcc
     3061 agttcgtgcg gaagctatcc tcgatgctcg gaacctgctt gatgcacaga tcgcgtccga
     3121 caacggagag tttatgacct tcgttgggac caaccggcga tctgtccgtg gtggaatctc
     3181 agtcaggttc tagcttccaa attctcggaa aattccgaaa agttggatta atctcaacga
     3241 cttagccccg cataagcaag cagtaaaccc gtgcggtcac taggaacgtt ccttgcctaa
     3301 aacactcgga tcgtctggtg gggaaagtag ggcggagttg aggaagcagt gaaaggatcg
     3361 gttctcacaa ctaaagcatg gttcctgctg atcggagcag cgctcctgat cacggccggc
     3421 gtcctcaact ttggccagcg agcgcgacag gaaacacccg cctgggatgg cgtcgaatgg
     3481 gtcgacacag ccgacggaat aatcgctaaa agtatcgaga agggatcagc ggcagaccgc
     3541 gcatggatgc tgccgggcga tcgcctggtt ggtatcgcgc tcgatccgga agcgaggccc
     3601 gacgaagttg taaatgctcg cgacgtgcag atctatctcg acgcggcgcg tgttggcggc
     3661 cagttgcact atcgaatgca gcggccctcg tatccgcccg agacgcaaaa ctactgggcc
     3721 gacctggaca acctcggctc gattcatcgc tggacgccgc gcgtcatcta catcaacgtc
     3781 atcgggctcg cgtacctgtt gattggtttc tttgttctgt tcaggcaggg cggcagcgcg
     3841 ccgttcgtct tacatttcgc gacgctctgt ctcgtggcat ttgtctttca cttctacaca
     3901 cccacgggca cgtatcgcga tctcgatctc gcgatcgcgt ttctgaagaa ctcggcattc
     3961 atactgttcg cgccgctgtt tctgcacttc tgcatgctgt acccgacgaa gcagcaactg
     4021 tttgcgaata agcgttggcg tgcaatcggg ctttacgttc cggcgattct gctgctgttg
     4081 ttggcggcgt ttgtgttcat gccgctgggc gctttcatgt atgtccagaa cctgggggcg
     4141 cgaatgggtc tccaggtcac gggtgtttct gaggcgtttg tcgacacctt ctatcgcgtc
     4201 agcttcttgc acttcatcgt tgggctcacc gccagcgcca cgcttttagt aaagacgtat
     4261 gtgactgcca ggaatgcgtt gatccggcag cagatgaagt gggtcgtgtg gggaacggta
     4321 ctcgcggtgg cgccgtttgt tttgctttac ggcctcggct tcatgtttgg cgcggcgtcg
     4381 gaccgctggc tcaccgatgt tgctgtgttg ccgttgatcg cgatcccgtt cgcgtttggc
     4441 tattcggtgt tgcgttatcg cctgatggat gtcgagctgg tcgtgcggcg cgtgtttgtt
     4501 tacgcgttga cgtcgatcgc gattgcgctg ctgtttggtg tggtggtcta caccggcgga
     4561 ctttacgctt tcggttcaga cggcttcagc tcgggtgaga tcacgttgcg cgtggttgcg
     4621 gcggtcgcgg cgatggcggc aatcgtgatg gttgcggcgc cggttaagaa ctttttgcag
     4681 gaacgtgtcg accggctctt ctacggcgag cgttacgatc tccgaaacag tttgctcgac
     4741 tttggccgca cgctttcggc gacgacggcg ctcgatccgc tgctggattc gctggtcagc
     4801 cggttacagg aagtgatgaa cgtcgggcgc gtcgcgatct ttatcgaaga ccggcaggcg
     4861 cgagacggtt atgcggtcgc gcgatcggtt ggacttgatg gtccgctgtt tgtgccgact
     4921 gacttccgcg agatgattcg cgtgcgttcg gctgaaacgg gtgtggttcg cgctgacgat
     4981 ctggaccttg cgtccgacgc gaacgtttcc gcgcgccgct cgcttcatta ttacgtgccg
     5041 tgcgttgtgc gtggacgaat ggttgccgtg atcggattgg gccgttcggt tgacggcgcg
     5101 ctgctgtcgt cggaagacgt cgagattctg cgcacggttt ccggttacgt tgcggtcgcg
     5161 attgaaaaca gtctgcttta caaggatcag caggaacgtg cgagcgagtt gaagctgctg
     5221 aaggaattca acgagtcgat tatcgaatcg atcaacgttg gattgctcgc ggtggatctc
     5281 gaagggcgtg tgacgcgttt gaactccgcg ctcgaacaca tgctcgatct gcgtcgcgat
     5341 gcggcgatcg gccggcgagt tgaaaacctg ttttcggaag acttcgcgga cacgctcaag
     5401 caggtgttgg gcaaagacgg ctggcatctt caggaaattc gcaacatcta caagctccac
     5461 accgccacgc gcacgaaccg tgcgctcgtt ttgaatatcg ccctcgcgcc gttgcaggac
     5521 ggacagggac aaaccggcgc gctcgtcgtt atcgaagacg tgacgacacg catcagtttg
     5581 gaagagcagt tacagcagcg cgagaaactc tcgtcgatcg gtttgctggc cgcgggtgtg
     5641 gcccacgaag tcaacacgcc gctcacgggt gtttcgtcgt acacgcaaat gctgctggcg
     5701 atgttgaatg aaaacgatcc gaagcacgcg ctgttgcaga aggtgcgcac gcaggctgaa
     5761 cgagcgacaa acatcgtcaa caacctgctg aacttctcgc gcaccggcag cgcgaccgag
     5821 ttttgcgagg tgaatgtggc gcgcgtgctt gacgacacgt tgcagttgct cgagccacag
     5881 atgcggcgca gtcagatcga gatcgtgcgt tcctacgacg atgatgcgcc gctggcttat
     5941 gcgaacgccg gcaagttgca acaggtgttt acaaacctcc tgctcaacgc gcgcgacgcg
     6001 attcccgatg gcggccgcat cgttgtctcg acgagcgccg ccgatgacgg atcgatcgtc
     6061 gcggagattt cagacacggg catcggcatc gcacccgaga acgtcgcgaa aatttacgat
     6121 ccgttctaca ccacgaaagg tgtcgggcag ggcaccggcc tcggtctggc cgtgacctat
     6181 ggcatcgtcc aggagcacgc cggtcacatc agcgtcgaca gcaaacccgg cgacggcacc
     6241 accttccgca tcaccctccc cgccgcccgc gcccgcgcgc gcctccaggc ggttggcgac
     6301 taatcacaaa tccaaatatc tattttgttt tacgtt
//
LOCUS       DASWTX010001249         2711 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_278202, whole genome shotgun sequence.
ACCESSION   DASWTX010001249 DASWTX010000000
VERSION     DASWTX010001249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2711
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278202"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(247..684)
                     /locus_tag="VGD38_19010"
     CDS             complement(247..684)
                     /locus_tag="VGD38_19010"
                     /inference="COORDINATES: protein motif:HMM:NF019500.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005267 - potassium channel activity
                     [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium channel family protein"
                     /protein_id="HEY0730183.1"
                     /translation="MLREIAIAAVIVTICLVVHVAGILLMAEWLLKNRELLERKATRR
                     HFALLLIALFAGIICLHLTQTGLWAMFYYTRGLFSDFETSLYFSMVSFTTIGYGDVLL
                     PRNWRLLGVVEGLSGVLLCGISTAFMFAVVNAIVQLRLQQRSK"
     gene            793..2100
                     /locus_tag="VGD38_19015"
     CDS             793..2100
                     /locus_tag="VGD38_19015"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEY0730184.1"
                     /translation="MTDLCRRNLSISEAVLILTAALLLLTGCKSKTAHTAAQPPPPAV
                     VVVPVAQRTVPIYSEYVGQTQADNTVELRARVEGILQKVYFREGAPVRKGQLLFTIDK
                     RPFQAALQSAKALAVKAVSDLAQAQQRTDVLQAQAELADAQAVLTRADQDVARLAPLA
                     KEKAVTEQDLDAAIANQKSARASVDAKKANLTNLEAAVKYTIERARAEVSAANARVTQ
                     AELDLSYCDIHSPISGIIGFLQVDEGNLVGRGDATLLATVSASDPLLVNFSVSEIEYL
                     KLTDPETAGKRSGDLRFELLLSDESVHPHSGYFRVLDRTVDPQTGTMKVEAAFPNPGS
                     YLRPGQFARVRVAVAQRENAILVPQRAIQEMQGTKTVMVVDESNKVAVRSVRIADKVD
                     KDVVVIDGLTAGERVIVEGMQKVRPGSQVNPSIAGVSTTTSGG"
     gene            2107..>2711
                     /locus_tag="VGD38_19020"
     CDS             2107..>2711
                     /locus_tag="VGD38_19020"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY0730185.1"
                     /translation="MSNFFIRRPIVAIVISILTLLIGVVVIRGLSIEQYPFLAPPNIR
                     ATATYPGASAEAVEQSVATPIEQEVNGVDRMIYMKSSNTSDGRMLLDVNFEVGTDQDT
                     ANVLTQNRVSTAAARLPAEVNQQGVTVKKQSPSILMVISLFSPSDTYDANFLINYCGI
                     NLRDQILRIPGIAQVDLFGGTDYGMRVWIKPDRLAKLGLTPS"
BASE COUNT          639 a          830 c          723 g          519 t
ORIGIN      
        1 agcagtttca cgatcacacc gttgaccttg aactgctcct ggccgacctt gagtttcccc
       61 tcgccgttcg catgcgccat tcgagaaccg tcctgcgcaa acgcagcgga cgcaccgaag
      121 atcgaaagca ccagcagcac agcggctagt gtcgcttttt tggatttcat ggcgcgacgg
      181 tagcgcgcgg aaagtgaaag ggtaactgtc agttcttaca ggcagcgcca caagaaggca
      241 caagattcat tttgaacgtt gttgtaaacg caactgaaca atcgcattca cgaccgcaaa
      301 catgaacgcg gtcgagatcc cgcaaagcag gactccggac aaaccctcga caacgccgag
      361 caaacgccag ttgcgcggca gcagtacgtc gccatatccg atagtcgtaa agctgaccat
      421 cgaaaaataa agcgaagtct caaagtcact gaacaatccg cgcgtgtaat agaacatcgc
      481 ccacaaaccg gtctgcgtca ggtgtaaaca gatgattccc gcaaacagcg cgatcagcaa
      541 cagcgcgaaa tgtcttcgcg tcgccttgcg ctcgagcaac tcgcgattct tcaacagcca
      601 ttcggccatc aacagaattc cggcgacgtg caccaccagg caaattgtga cgataaccgc
      661 ggcgatcgct atttctctca acatcgtgtg aaggcacgat aagtctcacg tttcaattcg
      721 ctgtactgtc aattctgcca gtaccagcct gttgaccacc gccatagact ccgcaaacac
      781 ggaggagcag caatgacgga tctctgcagg cgaaatctct cgatctcgga ggcggtcttg
      841 attcttaccg ccgcgctctt actgcttaca ggttgtaaat ccaagactgc gcacaccgcg
      901 gctcagcccc cgccgccggc agtcgtcgtg gtgcctgtag ctcaacgaac cgttccgatc
      961 tacagcgaat acgtcgggca gactcaggct gacaacacgg tagagttgcg cgcgcgcgta
     1021 gaaggaatct tgcaaaaggt ttacttccgc gagggtgcgc cggtcaggaa aggccagctt
     1081 ctgttcacta tcgacaagcg gccctttcaa gccgcattgc agtcggcgaa agcactcgcg
     1141 gtgaaagccg tttcggatct ggcccaggcg caacaacgaa ctgacgtgct tcaggcgcag
     1201 gctgagttag cggacgcaca ggcagtgttg acgcgagcgg atcaggacgt agcgcgtctc
     1261 gctccgttgg ccaaagaaaa agccgttacc gagcaggacc tcgacgcagc gatcgcgaac
     1321 cagaaatcag cgcgcgcctc cgtcgatgcc aaaaaagcaa atctcacgaa cctggaagcg
     1381 gcagttaagt acacgatcga gcgagcacgc gcagaagtct cggcggcaaa tgcgcgcgtc
     1441 acgcaagccg agctcgactt gagttactgc gatatccatt caccaatcag cggcatcatc
     1501 ggtttcctgc aagtcgacga aggaaacctc gtcggccgcg gcgatgccac gttgctcgca
     1561 accgtctcag cttccgatcc gctgctcgtc aacttcagcg tcagcgagat cgagtacttg
     1621 aagttgaccg atccggaaac cgcgggaaag cgatccggag atctccgttt tgagttgctg
     1681 ctttccgacg aaagcgttca tccgcactcc ggctacttcc gtgtgttgga ccgcacagtc
     1741 gatccacaaa ccggaacgat gaaagtggaa gccgccttcc ccaacccggg cagctacctg
     1801 cggcccggcc aatttgctcg cgtgcgcgtg gcagttgcgc aaagagagaa cgcgatcctc
     1861 gtcccgcaac gcgccattca ggagatgcag ggaacgaaga ccgtcatggt tgtggacgag
     1921 tcgaacaagg tcgcggtacg cagcgtcagg attgccgaca aggtcgacaa agacgtcgtc
     1981 gtgattgacg gcctcaccgc gggcgagcgc gtcatcgtcg agggtatgca aaaggttcga
     2041 cccggcagtc aggtaaatcc gtctatcgca ggtgtctcga cgacgacctc ggggggctga
     2101 caactcatgt caaatttttt catccgccgg cccatcgtgg ccatcgtgat ttcgatcctg
     2161 actctgttga tcggcgtcgt ggtcattcgc ggactttcga tcgaacagta tccgttcctg
     2221 gcgccgccca acatccgcgc cactgcgaca tatccgggcg cttccgctga agccgtcgaa
     2281 caatccgtcg ccactcccat cgaacaggaa gtcaacggcg tcgatcgcat gatctacatg
     2341 aagtcgtcga acaccagcga cggccgcatg ttgctcgacg tcaatttcga agtgggcacc
     2401 gaccaggaca ccgcaaacgt cctcacccag aatcgtgttt ccaccgccgc cgctcggctc
     2461 cccgccgaag tcaaccagca gggcgtgact gtcaaaaaac aaagcccgag catcctgatg
     2521 gtgatctcgc tcttctcgcc gagcgacacc tacgacgcca attttctgat caactactgc
     2581 ggcatcaatc tgcgcgatca gattcttcgc attccaggca tcgcgcaggt cgacctcttt
     2641 ggcggcaccg actacggcat gcgtgtgtgg atcaaacccg atcgacttgc caagttgggc
     2701 ctcactcctt c
//
LOCUS       DASWTX010001250         2758 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_145268, whole genome shotgun sequence.
ACCESSION   DASWTX010001250 DASWTX010000000
VERSION     DASWTX010001250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145268"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1252)
                     /locus_tag="VGD38_19025"
     CDS             complement(<1..1252)
                     /locus_tag="VGD38_19025"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEY0730186.1"
                     /translation="MDNVSNRVASLSPDERSSLVMRLKRRAQKEERVVERTIRRRENS
                     SDAPLSLAQQRLWFLHQLDPGNDPYYLPFYYELTGPLDVSALERSLNEIIRRHEILRT
                     VFKERDNNVVQSVLPSLTLPLPKFDLTQLPPTSADEEVQRLLDAEAARPFDLEQGPLL
                     RAMLVKKSDEEHGLSLVVHHIVMDGWSIEILLAELSALYEAFSANEPSPLPDLPLQYA
                     DFAVWQREWITGGVLDEQLAYWKKQLSGDLPMLDVPTDHPRPQRMTYRGADKDFYLTH
                     DQLERLNELAHREGATLFMTLMAALLTLLHRYTGQEDIILGAANAGRSHAEIEKLIGF
                     FVNTLVLRTDLSGNPKFTELLARVREVALGAYEHQDVPFEKLVEELQPERDMSRHPFF
                     QVMVNFQNAPAETPASHGLQITPID"
     gene            complement(1252..>2758)
                     /locus_tag="VGD38_19030"
     CDS             complement(1252..>2758)
                     /locus_tag="VGD38_19030"
                     /inference="COORDINATES: protein motif:HMM:NF020243.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY0730187.1"
                     /translation="ERKDYDALVQELVTRGIKFTKVIHLWSLDRAASFEQAQQSGLYS
                     LLFLTQALAGRSLANSLEFVVVTDSVQEVSGDESLQPERATVLGACKVIPQEYPEITC
                     RSIDITRDTRIVDQLVDELNGSERVVAYRGRHRWIQSFEPVRIEKGAQSLLSDGGVYL
                     ITGGLGTVGLTLAQHLARTHKAKLALLGRSAPAESKIEKVRELEALGAEVLVLRADVS
                     NEEQMFEAVARTVERFGRIDGVIYGAAAGASTDKEIRATTPDDCMVQFQGKAHGLMVL
                     EKVLEGRDYKFCVMLSSLASILGGMTFASYAAANIFMDTFVRKVNQSHPQTWLSVNWD
                     GWSDAAIDARSGGEALERVLSIGPVSQVAVSVSDLDSRIERWVSFEDSQTAVTTEKTE
                     TAVLHPRPNLLNPYVAPSNELEQDLAETWQELLGIERVGINDNFFELGGHSLLATMVL
                     SRLRKEFGVELLLRSFFESPTVSGLALIIAQRVIEDQDEQSIAQLLASATK"
BASE COUNT          554 a          806 c          783 g          615 t
ORIGIN      
        1 tgtcgatggg tgtgatttgc aaaccatgcg atgcgggtgt ttcggccggc gcgttctgga
       61 agttgaccat cacctggaag aagggatgcc ggctcatgtc gcgttccggc tgcaactctt
      121 cgacgagctt ttcaaacggc acgtcctggt gctcgtacgc gcctaacgcg acttcacgaa
      181 cgcgggcgag cagttcggta aacttcggat tgccggacag gtcggtgcgc aggacgagtg
      241 tgttgacgaa aaagccgatg agcttttcga tctccgcgtg actgcgtccg gcgttagcgg
      301 cgcccaggat gatgtcttcc tgtccggtgt aacggtggag cagtgtgagt aacgcggcca
      361 tcagcgtcat gaacagagtg gcgccttcgc ggtgggccaa ctcgtttagg cgctccaact
      421 gatcgtgcgt gaggtaaaaa tctttatcgg cgccgcggta tgtcatgcgc tgtggccgcg
      481 ggtggtctgt gggcacgtcg agcatgggca ggtcgccgct cagttgcttc ttccagtaag
      541 cgagttgctc gtccagtacg cctcccgtga tccattcgcg ctgccagacg gcgaagtcgg
      601 cgtattgcag cggaaggtct ggtaatggtg atggttcgtt tgccgagaac gcttcgtaga
      661 gtgcgctcaa ttcggcgagg aggatctcga tggaccagcc gtccattacg atgtgatgga
      721 cgaccaggga aagcccgtgc tcctcgtcgg attttttcac gagcatcgcg cggaggagtg
      781 gtccctgttc gagatcgaaa ggccgtgcgg cttcggcgtc gagaagccgt tgaacttcct
      841 cgtcggctga ggtaggcggg agttgagtca gatcgaactt cggtaatggc agggtgagtg
      901 acggcaaaac gctttgcacg acgttgttgt cgcgctcttt gaagactgtg cggagtattt
      961 cgtggcgtcg aatgatttcg ttgaggctgc gctcgagggc tgaaacgtcc agcggcccgg
     1021 tcagttcgta gtaaaaaggc agataataag gatcgttacc gggatcgagt tgatgaagaa
     1081 accagagccg ttgctgcgcg agcgacagcg gcgcatcgct gctgttctcg cggcggcgaa
     1141 ttgtccgctc cacgaccctc tcctccttct gcgccctgcg cttgaggcgc atgacgagcg
     1201 acgaccgttc gtccggagag agcgaggcta cgcgattgga aacgttatcc attactttgt
     1261 ggcgctcgcg aggagttggg cgatgctttg ctcgtcctga tcttcgatga cgcgttgggc
     1321 gatgatgagg gccaggccgc tcacggtggg ggattcgaag aagctgcgca gcagtaattc
     1381 cactccgaat tctttacgca gacgagacag caccatcgtc gccaatagtg agtggccgcc
     1441 gagctcgaag aagttatcgt tgatgccgac tcgctcgatg cccagcaact cctgccacgt
     1501 ctcggcaaga tcctgctcca gttcattgct cggagcaacg taggggttga gtaagtttgg
     1561 tcttggatga agaactgctg tctcggtttt ctcagttgtc acagcggtct gcgaatcttc
     1621 gaagcttacc caccgttcaa ttcgcgagtc gagatctgaa accgacaccg caacttgcga
     1681 cactggtcca atcgacaaca cgcgttccaa cgcttcgccg ccacttcgcg cgtcgatcgc
     1741 tgcatcactc caaccatccc agttgacgct cagccacgtc tgcggatgcg actggttaac
     1801 ttttcgcaca aacgtatcca taaaaatgtt tgcggctgcg taactcgcga acgtcatgcc
     1861 gccgaggatc gacgcaagcg acgagagcat cacacagaat ttgtaatctc taccctctaa
     1921 aaccttttcc aacaccatca ggccgtgcgc tttgccttga aactggacca tgcagtcatc
     1981 cggcgtcgtc gctctgatct ctttgtcggt gctcgcgccg gccgcggcgc cgtaaatcac
     2041 tccgtcgatg cgcccaaacc gttccacagt gcgagccact gcttcaaaca tctgctcttc
     2101 gttcgacacg tcggcacgta acaccagcac ttccgcgccc aacgcctcca actctcgaac
     2161 tttttcaatt ttcgattccg ccggcgcgct acgaccaagc agcgcgagct tcgccttatg
     2221 cgtgcgcgcg aggtgttggg ccaacgtcag cccgaccgtc cccaagcctc cagtaatcaa
     2281 ataaacgccg ccatcactca gcagtgattg cgcgcctttc tcgatccgta cgggttcgaa
     2341 gctctgtatc cagcgatgcc ggccgcgata agcaacgacg cgttccgatc cgttcaactc
     2401 atcgacaagc tgatcgacga tccgcgtgtc gcgcgttata tcgatgctgc gacaagtgat
     2461 ctccgggtac tcctgcggaa tgaccttaca cgcgccgagc accgtcgccc gttcaggttg
     2521 cagcgactcg tcgccgctca cttcctgcac gctatccgtc acaaccacaa actccaacga
     2581 gttcgcgagc gatcgacccg cgagtgcctg cgtcaaaaag agcaaactgt acagacccga
     2641 ttgctgtgcc tgctcaaaac tcgcagcgcg atcgagactc caaagatgaa tcaccttcgt
     2701 aaacttgata ccccgcgtta ccaactcctg caccaaggcg tcgtagtctt ttctttcc
//
LOCUS       DASWTX010001251         1647 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_427625, whole genome shotgun sequence.
ACCESSION   DASWTX010001251 DASWTX010000000
VERSION     DASWTX010001251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1647
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427625"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..703)
                     /locus_tag="VGD38_19035"
     CDS             complement(<1..703)
                     /locus_tag="VGD38_19035"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY0730188.1"
                     /translation="MLRLLLLLVILPTVALAQSTQEKVREYRRANEHKILNEYLALLS
                     IPNVASDIPNIRKNAEFIAAMMKQRGLEPRLLEGPSPNTPPAVYAEWKVPGAQRTLLL
                     YAHYDGQPTDPKQWTGTHPWKPIFRHAAIEAGGQIVPAPPATEAFNNNWRIYARSASD
                     DKAGVMAILNAFAALKATGIAATSNIKFFFEGEEEAGSPHLAEIIKTHRQLLEADAWI
                     ICDGPVHQSGKKQVVF"
     gene            complement(868..>1647)
                     /locus_tag="VGD38_19040"
     CDS             complement(868..>1647)
                     /locus_tag="VGD38_19040"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY0730189.1"
                     /translation="DDLYTRFPKPDFAIALHDKPELETGKVGYTPGYAMASATSIDVK
                     IRGVGGHGSAPENTKDPIVTAAQVVMALQTIVSRENSPLDPAVVTVGSIHGGTRYNII
                     PDEVNLQLTVRTYKPEVRQRILASIERIVKGVALTSGIPEDRAPTVKVSEGTGSTYND
                     PQLLERLAVAFKQALGEENVVKVPPIMASEDFGYFSMDQKIPTTIFWLGASDPAKVKQ
                     SRESGVALPGLHSALFAPVPEPTLRTGVKAMTSAVLELMKK"
BASE COUNT          299 a          455 c          506 g          387 t
ORIGIN      
        1 caaacacgac ctgctttttg ccggactggt gtactggtcc atcacagatg atccacgcgt
       61 cggcttcgag caactgacga tgcgttttga tgatctcggc gaggtgtggc gagccggctt
      121 cctcttcgcc ttcgaaaaag aacttgatgt tggaggtggc ggcaatgccg gttgctttga
      181 gtgcggcgaa ggcgttgaga atcgccatca cgccggcctt gtcgtcggac gcagagcgcg
      241 cgtagatgcg ccaattgtta ttgaaagctt cggtcgcggg cggcgcggga acgatctggc
      301 cgcctgcttc gatcgcagcg tgacgaaata tgggtttcca cggatgtgtt cccgtccact
      361 gttttggatc ggtcggctgg ccgtcgtagt gcgcgtaaag caacaacgtg cgctgcgcgc
      421 ccgggacttt ccactccgcg taaaccgccg gcggcgtgtt tggcgacggg ccttcgagca
      481 ggcgcggctc gaggccgcgc tgcttcatca tcgcggcgat aaactctgcg tttttgcgga
      541 tgtttggaat gtctgacgcg acgttcggaa tcgacagcag cgccaggtat tcgttgagaa
      601 tcttgtgttc gttcgcccgc cggtattcac gcactttttc ctgcgtgctt tgggccagcg
      661 cgacggtggg cagaattacg aggagcagca gtagtcggag cattggcgga ttatacaggt
      721 tcggggcaga cgaaaacgcc acaagaggca caaaaggcac aagtgatact gagttttgag
      781 ttcaagcttt aggttgtttc ggacggagca agctaaagct tgaactcaaa acgtgacctc
      841 cttgtgcttc ttgtgcctct tcgtggctta cttcttcatc agctccagca ccgctgaagt
      901 catcgctttc acgccagttc ggagcgtcgg ctcgggcacg ggtgcgaaga gcgccgaatg
      961 aaggccgggc aacgcgaccc ccgactctct gctctgtttc actttcgccg gatctgaagc
     1021 gccgagccag aagatcgtcg tcgggatctt ctggtccatg ctgaagtaac caaagtcctc
     1081 gctcgccatg ataggcggca ccttcaccac gttctcttcg ccgagcgctt gtttgaacgc
     1141 gactgcgaga cgttcgagca actgcggatc gttgtatgtc gagcctgtgc cttcgctgac
     1201 tttcaccgtc ggcgcgcgat cttcgggaat gccggacgtc aacgccacgc ctttcacgat
     1261 gcgctcgatc gacgcgagga tgcgttgccg cacttcgggt ttgtaagtgc gaacagttag
     1321 ttgcaggttc acttcgtcgg ggatgatgtt gtaacgcgtg ccgccgtgaa tcgaaccgac
     1381 cgttaccact gctggatcga gcggcgagtt ttcacggctc acgattgttt gcagcgccat
     1441 gacgacctga gccgcggtca cgatcggatc tttcgtgttc tccggcgcgg aaccgtggcc
     1501 gccgacgccg cgaatcttga cgtcgatcga tgtcgcgctg gccattgcat aaccgggcgt
     1561 gtaaccgact ttgcccgttt ccagttcggg tttgtcgtgc agcgcgatcg cgaagtcggg
     1621 tttgggaaaa cgcgtgtaaa gatcgtc
//
LOCUS       DASWTX010001252         1816 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_210306, whole genome shotgun sequence.
ACCESSION   DASWTX010001252 DASWTX010000000
VERSION     DASWTX010001252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1816)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1816)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1816
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210306"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..968
                     /locus_tag="VGD38_19045"
     CDS             <1..968
                     /locus_tag="VGD38_19045"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0730190.1"
                     /translation="RGGFIGTTAGGDAVSTGIPVTPLDPEYSDSFDLSFRYTSRRFSA
                     ELTGFTTKLADVYFDQALVLPPGATGTFLGSDQIVAQNAAGLVFVAAAPTSPVLVRVN
                     FDDARLNGVEANARVRFSDHFSGNGNFTYIRAHSLLNGLPPNMEGGIPPATGFVSLRY
                     QPRSRFYVEAYSVMAGRQNRLSSLDLADRRTGGARSRGNIQNFFRRGACVRGLTTPGG
                     SGCGSAGGILIPTGETLAQVQNRLLPTGATINGVRVVNNDTLVPTHPYLAGYGLVGVR
                     GAFKFSETSELFVDFENIFDKSYRGISWGIDGAGRGVTLRYRYSF"
BASE COUNT          340 a          553 c          543 g          380 t
ORIGIN      
        1 cacgcggtgg tttcatcggc acgactgccg gcggcgatgc agtttcgacc ggtattccgg
       61 tcacgccgct cgatccggag tacagcgaca gtttcgatct tagttttcgt tacacgagcc
      121 gtcgttttag cgcggagttg acgggcttca ctacgaagct tgccgatgtt tacttcgatc
      181 aggcgctggt gctgcctcca ggcgcgaccg gcacgttcct cggcagcgat cagatcgtcg
      241 cgcagaacgc cgcgggactt gtgtttgttg ctgcggcgcc gacgagtccg gtgctggtgc
      301 gcgtgaactt cgacgatgcg cggttgaatg gtgtggaggc gaatgcgcgc gtgcgtttca
      361 gcgatcactt cagcggcaat ggaaacttca cgtatatccg cgcgcacagt ttgttgaatg
      421 gattgccgcc gaatatggag ggcggaattc cgccggcgac tggtttcgtc agtttgcgct
      481 atcagccgcg ttcgcgtttt tacgttgagg cgtattcggt gatggcgggg cggcagaatc
      541 gtctgtcgtc gctggacctg gctgatcgtc gtactggcgg cgcacgctcg cgtggcaaca
      601 ttcaaaactt cttccgccgt ggcgcctgtg ttcgtggtct cacgacaccg gggggtagcg
      661 gctgcggatc ggcgggcggc attctcattc caaccggcga gacgttggcg caagtacaga
      721 accggctgct cccgaccggc gcgacgatca acggcgtgcg cgtcgtcaac aacgacacgc
      781 tcgtgccgac gcatccgtac ctggcgggtt acggtctcgt gggcgtgcgc ggcgcgttta
      841 agttcagcga aacgtcggaa ctgtttgtgg acttcgaaaa catcttcgac aaatcctacc
      901 gcgggatcag ttggggcatc gacggcgccg gccgcggcgt aaccctgcgc taccgctact
      961 cgttttagtt cctctacatc gctctcttgt ttcactggcg cggcgagtcg cccttcggct
     1021 ctgccgaccg acgtgacgct actgtgcgct gtcgctactt attgtctggt tgctctaatc
     1081 gtcacgcttg cactaaccgt cataacggct ccgccgccgg atgtgaggcg aggctgcgcc
     1141 tcgccgtagg aatgtaaaaa gggaattggg ctacgcccct ggtacggcct ctggcctgga
     1201 catcttaggg ctaagcccga accaggggct tagccccatg gttcacaccc acgcttacgg
     1261 cgaggcgtag cctcgcctca catccggcgg cgaagccgtg tcgaaaagcc gaagctgcgt
     1321 cgaaaggtcc tttgaagtga agcgtcgttg gctactctgc ccaccatcga tcatcgacga
     1381 ccatgacgtt cggcactccg tggcacccca cttccgagtc gtggcaccgt tgagtagctg
     1441 tttcgcacgt cagcccacgc gcgccactca agaacacacc agttcacgca taagaaaacc
     1501 accgacgcag tcggtggttc gttcatactc accctacacg gaaccttaga ccagcggaat
     1561 cccaccgacc taagtcggtg gttttttcag acccaaccaa caacggacgt gagacgagcg
     1621 ggcaatccca ccgacgcagt cggtggttcg ttcagaccca acctacaacg gacgtgagac
     1681 gagcgggcaa tcccaccgac gcagtcggtg gttcgttcag acccaaccta caacggacgt
     1741 gagaccagca gccaatccca ccgacgcagt cggtggttcg ttcataccta acctacaacg
     1801 gacgtgagac gagcgg
//
LOCUS       DASWTX010001253         2622 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_278270, whole genome shotgun sequence.
ACCESSION   DASWTX010001253 DASWTX010000000
VERSION     DASWTX010001253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2622
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278270"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1369
                     /locus_tag="VGD38_19050"
     CDS             <1..1369
                     /locus_tag="VGD38_19050"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0730191.1"
                     /translation="PRDLVSLQSVGLNLSVLFWTLGVSLLTGIVFGLAPALHISRLNL
                     NDSLKEGGKSESAQAGGSRRLRSALVVSEIALAVVLLASAGLLIKSFVRLQQVDRGFQ
                     TDNILTMVVRLPDAAYKEDPQVVNFFVQAMERIRSLPSVRSAGVINFLPLYGGLGSST
                     GFKIEGRPEPPPGQGPSTDVRVVDAGYFETMGIPLLRGRNFSSLELREPKRVILINDA
                     LARKHFGDEDPIGKRLDVAMFENPIWCEVIGIVGNVRYDSLIDESPPAVYFAHPDLAY
                     SFMTLVIRTDGDPAAIAPAVQREIRGLDPNQPVSDVRTMDQVMAEWVSRSRFNTLLLG
                     LFAGLATLLSAVGIFGVMNYSVALRTRELGLRLAVGAQPRQVLLLVLKQGLLLTIFGV
                     AVGLAAAFALTRLLSGLLFGVEAFDLSTFTIISLLLVFVSLLACYLPARRAMRIDPLR
                     ALRYE"
     gene            1430..>2622
                     /locus_tag="VGD38_19055"
     CDS             1430..>2622
                     /locus_tag="VGD38_19055"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEY0730192.1"
                     /translation="MTTPEQTGESGRTAGSKLGWLIAGRLVTALLLSVFGTIWTSAGE
                     PQQTINKSLTLLTIVACLTIAYALLFRVSKNILVQARLQLAIDGLLISWLVWNSAVIQ
                     SPYVALYIVIIAISSLFLGPRGALITSVGCAVAFTCCALAITGVFGPTAPTNLVGGSV
                     SQTIQWVGLFDVAFLVVGLLSARLAERQTRSDVRLQAAKQSLASLRALHERIVASIRS
                     GVVTTDLAGRIYTFNAAAEEITGHKEQTIRGQDASILFGDVKEHIAESLRALQNGETS
                     PRFETSCMNADGMHLRLGFSISPLSSESGETTGMVITFQDLTQVRTLEETSRRQDRLA
                     AIGRMAASIAHEIRNPLAAMRGSIQMLRSEIDDDSSQAELMEIILRESDRLNRIITDF
                     LNYARP"
BASE COUNT          484 a          810 c          748 g          580 t
ORIGIN      
        1 tccgcgtgat ttggtcagct tgcagagcgt tggtctcaat ctgtcagtgc tgttttggac
       61 gctgggagtt tcgctgctga cgggaatcgt tttcgggctc gcgccggcgt tgcacatctc
      121 gcgtctcaat ctaaatgatt cgctgaaaga gggcggcaag tcggagtcgg cgcaagctgg
      181 cggcagtcgt cgtttgcgca gcgcgctcgt ggtttcggag attgcgctcg cggtggtgct
      241 gttggccagt gccggtttgc tcatcaagag ttttgtgcgg ctgcaacagg tcgatcgcgg
      301 atttcaaacc gacaacattt taacgatggt cgtgcggctg ccggatgcgg cttacaaaga
      361 agacccgcag gtggtgaact tcttcgtgca ggcgatggaa cggatccgat cgctgccgtc
      421 ggtgcgttca gcgggtgtga tcaacttcct gccgctgtat ggcggtctgg gttcgtcgac
      481 cggtttcaag atcgaaggcc ggcctgagcc gccgccgggc cagggaccga gcaccgacgt
      541 gcgtgttgtc gatgccggat attttgaaac gatgggcatt ccgttgcttc gcggccgcaa
      601 cttctcgagc ctcgaactgc gagaaccgaa gcgcgtgata ctcatcaacg acgctttggc
      661 ccggaaacat tttggggatg aagatccgat cgggaaacgt ctggacgtcg cgatgtttga
      721 gaatccgatc tggtgcgaag tcatcggcat cgttggtaac gttcgttacg acagtttgat
      781 cgacgaatcg ccgccggcgg tctacttcgc gcacccggac ctcgcctatt catttatgac
      841 gctcgtgatc cgcactgacg gcgaccccgc ggcgatcgcg ccggcagtcc aacgcgaaat
      901 acgtggtctc gatccgaacc aaccggtttc agacgtacgc acgatggacc aggtgatggc
      961 tgaatgggtg agccgttcac gtttcaacac actgcttctc ggtctcttcg ccggactcgc
     1021 tacactgctt tccgccgtcg gcatctttgg cgtaatgaac tactcggtgg ccctgcgcac
     1081 gcgcgagctc ggcctgcgcc tcgcagtcgg cgcccagccg cgccaagttc tcttactcgt
     1141 cttgaaacaa ggattgttgt taaccatctt cggcgtcgca gtcggactag cagcagcctt
     1201 cgccctgact cgcttactct cgggcctact cttcggcgtc gaagcattcg acctgagcac
     1261 attcacaatc atctccctgt tactcgtctt cgtctccctc ctcgcctgct acctccccgc
     1321 gcgccgcgcc atgcgcatcg accccctgcg cgcgctgcgg tacgagtgag ttggtgcgca
     1381 gtaaatagcc agcaaaatcc gggcgagggt gtgatacgct tttcgcccga tgacgacgcc
     1441 agaacaaacg ggcgagtccg gtagaacggc gggatcgaaa cttggctggc ttattgccgg
     1501 cagactcgtt actgcactcc tcctcagcgt ctttgggact atttggacca gcgccggaga
     1561 gccgcaacag acgattaata agagtcttac tctcctaacg atcgtcgcgt gcctgacgat
     1621 cgcttatgca ctgctcttcc gcgtttccaa aaacatcctc gtacaggccc gcctccaact
     1681 cgcgatcgac ggtctactga tctcgtggct cgtttggaat tcggcggtca ttcaatcgcc
     1741 gtatgtcgcg ctttacatcg tcatcatcgc tatctcgagc ctcttccttg gaccacgcgg
     1801 agcactcatc acttcagtcg gctgcgcggt tgcgtttacg tgctgcgcgc tcgcgatcac
     1861 gggcgtcttt ggcccaaccg cgccgaccaa tctcgtcggc ggttcggtgt cacaaacgat
     1921 ccagtgggtc ggactcttcg acgttgcctt tctcgtagtc ggtctgcttt ccgcgcgtct
     1981 cgccgaacga cagacgcgtt ccgacgtacg gcttcaggca gccaaacaat cgctggccag
     2041 cttgcgcgcg ctgcacgagc gcatcgtcgc ttcgattcgt tccggtgttg tgaccaccga
     2101 tctcgccggc cgcatttaca ctttcaacgc cgccgccgaa gagatcacgg gccacaagga
     2161 acagaccatc cgcggccagg acgcctcgat actcttcggc gacgtgaagg aacacatcgc
     2221 cgaatcacta cgcgcgctgc aaaacggaga aaccagcccg cgtttcgaaa ccagttgcat
     2281 gaacgcggac ggaatgcacc tgcgcctcgg cttcagtatt tcgccgctct cttcagaatc
     2341 aggcgaaacc accggaatgg tgatcacgtt tcaggacctg acgcaggtgc gcacgctcga
     2401 agaaacttcg cggcggcagg atcgcctcgc cgcaatcgga cgcatggccg cgtcgatcgc
     2461 gcacgagatt cgcaatccgc tcgccgcgat gcgcggctcg atccagatgt tgcgctcgga
     2521 gatcgacgac gactcgtcgc aagcggaact gatggagatc atcctgcgcg aatccgatcg
     2581 tctcaatcgc atcatcacgg actttctcaa ctacgcgcgg cc
//
LOCUS       DASWTX010001254         4553 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_39538, whole genome shotgun sequence.
ACCESSION   DASWTX010001254 DASWTX010000000
VERSION     DASWTX010001254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4553
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39538"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..560)
                     /locus_tag="VGD38_19060"
     CDS             complement(<1..560)
                     /locus_tag="VGD38_19060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730193.1"
                     /translation="MSRLAFVLILLSFACAPIANAQTQQTPPAPPQTPALEDCGCETQ
                     SLPETLAIVNGVKISRSDINKTTGQTIDQLQRQVIEARKRELDLIINSKLLSLEAKKR
                     GVSTVKLLEQEVVAKVKRPTQVEAQVFYDQNKARINREFKDVVNDIVAYLFEQRQRDE
                     AKKFADTLRAANDLKILVTEVKPPATL"
     gene            909..1925
                     /locus_tag="VGD38_19065"
     CDS             909..1925
                     /locus_tag="VGD38_19065"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0730194.1"
                     /translation="MSVISKVFPRSGLLSLKRGLNPRLIIIFTALTVLLTASIILAWE
                     RVLRPPYYAWVARNYPGAENAENRYKLEQRGEHFFISMAVDVVVVTMLLVIVGRKQQR
                     LIAVNEQLAHSEKVATLGRVAAQVAHEVRNPLAGLLLYSEHLKSKLDGKAQNGEAQLV
                     DKIILTINNLTATTEQILNFARPVTLAPKRLDLNEVAQDVIQLLSTEITANSIETKLD
                     LDPSPVAGMLDEPSIRAATLNLVLNAVQAMSKGGVLTISTGTSGESVWMEIKDTGAGM
                     SPAQVKEIFEPFKTTKSRGLGLGMPYAQKIIHQHGGQITVASREGKGTQVRIELPING
                     RNSE"
     gene            1922..3316
                     /locus_tag="VGD38_19070"
     CDS             1922..3316
                     /locus_tag="VGD38_19070"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY0730195.1"
                     /translation="MIARPRKKILVVDDEPSVTGSLELILSEAGYEVLTAHTVSDAIG
                     VLKQTPLDLVITDLRLSDASGIDLTMHIKRTTPDVEVILMTAYGSIDVTIEAIKAGAY
                     YYLEKPYTPDRLFALVDRALQLAALRHENESLKRTLAGDSETFGMIGRDPKMCQIFET
                     IRTAAPSDASVLIEGESGTGKELIAAAFHTQSQRADGPFIRINCAAIPHELIESELFG
                     YKKGAFTGADRDKRGLIEAANQGTLLLDEIAEMPAHLQTKLLRVLQERKLRRLGDEHE
                     ISVNFRLVSATNRNTQALLDEGLLRKDLYFRISTIKIRVPPLRERLDDVPLIAGRFLK
                     RFNEQYGKRIQDLAPETVMRLVRYDWPGNIRQLESVIERAVLFCPGPELQPNCLPEEF
                     QTRAASSAFIIPPLLPMEEIEREAIMQTLERTAGNVKKSAQILRFPRPTFYRKLKKLG
                     IKVERPDPPVAAKP"
     gene            3332..3736
                     /locus_tag="VGD38_19075"
     CDS             3332..3736
                     /locus_tag="VGD38_19075"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0730196.1"
                     /translation="MSDSSTNDNLRILIVDDEPSVGDALRLVLEAQGYEVVLVTNGRD
                     GIDQARNRRFGFGVVDLFLTDVSGFQVITDLLTVQPQIPILLITAHGSPQVFAEAKKL
                     GAIGALAKPFHPSEILSLIATHVHEPNRKSLT"
     gene            3930..>4553
                     /locus_tag="VGD38_19080"
     CDS             3930..>4553
                     /locus_tag="VGD38_19080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730197.1"
                     /translation="MGANFGRATYSAQQVPGAVIIFATGCHPTTGYVDFFEQSPLRIF
                     PPQFIFRTIPPTGMVLQVITPFSIWVMFGASDPVETVTVFDADGSHEIKVEQVPDLAA
                     DKSATWLSGSVMRSDGQGSGQLTAAAVADRATTMATGEEGGGPTTMATGEEDVRAPTT
                     MAVGEEGGGPTTMAVGEEDARLATTFALGEEGPAPTTMALGEEGPVFT"
BASE COUNT         1067 a         1318 c         1224 g          944 t
ORIGIN      
        1 agtgttgccg gtggttttac ttcggtgacg aggatcttta ggtcgttcgc cgcacgcaac
       61 gtatcggcaa acttcttcgc ttcgtcccgt tgccgctgtt cgaacaggta cgccacgatg
      121 tcgttgacga cgtccttaaa ctcacgattg atacgtgcct tgttctggtc gtaaaagacc
      181 tgcgcctcga cctgcgtcgg gcgcttcact ttcgcgacga cctcttgttc gagcagtttc
      241 accgtgctca cgccgcgctt tttggcctcg agcgacagca gtttcgagtt gattatcaga
      301 tcgagctcgc gtttgcgggc ttcgatcacc tgacgctgta actggtcgat ggtctggccg
      361 gttgtcttat tgatgtcact gcgcgaaatc ttgaccccgt tcacgatcgc gagtgtctca
      421 ggtagagact gtgtctcaca tccgcaatcc tcgagtgcag gtgtttgtgg aggcgccggc
      481 ggcgtctgtt gagtctgtgc attcgcgatt ggcgcacacg caaagctcag aagtataagg
      541 acgaaggcga gtcggctcat tttaatctcc ttgggttgat gctatgattc cccggcgcga
      601 taaggttgtc gttggcatgc tgtcgcatag cactctgcaa gaactgtgct acagccgcgt
      661 tgctaagtgt cttctccgct ggcttacatc gttcgcggaa aattccacac caagcacgga
      721 aaactactcc tgtagcaaac gcagcatttg ctcaaaatga gacactgtcg atcatttgca
      781 gcgcgtcttg cagacttcaa tcaggttttt tgggtgttgt agttaacaac ctcgtctgaa
      841 cccaaaacag gaaataatcc cttctcagga ggctgattgg gaacagcctc tttaccggga
      901 accgtcttat gagcgtcatt tccaaagtgt ttcctcgctc tggattactc tcgcttaagc
      961 gagggctgaa cccacgcctg atcatcatct tcacagcgct gacggtactc ttgaccgcga
     1021 gcatcattct cgcgtgggag cgagtgttac gtccgcctta ttacgcctgg gtcgcgcgca
     1081 attatccggg agctgaaaac gccgagaacc gctacaagct cgaacaacga ggcgagcatt
     1141 tcttcatctc gatggccgtc gacgtggtcg tcgtcacgat gttgctcgtt atcgtcggcc
     1201 gcaaacagca acggctgatc gcagtaaacg aacaactcgc gcacagtgaa aaagtcgcga
     1261 cgctcggtcg cgtggcggcg caagttgcac atgaagtcag aaacccgctc gccggccttt
     1321 tactatattc agaacatctc aagtcaaaac tcgacgggaa agcgcaaaac ggcgaggcgc
     1381 agctcgtcga caagatcatc ctcacaatca acaatctcac ggccaccact gaacagattc
     1441 tgaacttcgc gcggccggtc acgctcgcac ccaagcgcct cgatctgaat gaagtcgcgc
     1501 aagacgtgat tcaacttcta agcaccgaga taacagccaa ttcgatcgaa acgaaactcg
     1561 atctcgatcc ttcgcccgtc gccggaatgc tcgacgaacc atcgattcgc gcagcgacgc
     1621 tcaatctcgt gctcaacgcc gttcaggcca tgtcgaaggg cggagtcctg acgatctcca
     1681 ccggaacaag cggcgaaagt gtatggatgg aaatcaaaga caccggcgcg ggcatgagcc
     1741 ccgcacaggt caaggagatc tttgagccat tcaagacgac gaagagccgt ggcctcggtc
     1801 tcggcatgcc ttacgcgcag aagatcatcc accagcatgg cggccaaatc accgtcgcaa
     1861 gccgcgaggg aaagggaacg caggtcagaa tcgaattgcc cattaatggg aggaactcag
     1921 agtgatcgca cgcccccgaa agaaaatcct ggttgttgac gacgagccaa gcgtgaccgg
     1981 atcgcttgaa ttgattctca gcgaggctgg atacgaagtc ttaaccgcgc acactgtttc
     2041 cgacgcgatc ggcgtcctaa aacaaacgcc gctggatctc gtcatcaccg atctgcgttt
     2101 gtcggatgcg tccggcatcg atctgacgat gcacatcaaa cggaccacgc ccgacgtcga
     2161 agtgattctg atgacggcct acggctcgat cgacgtaacc attgaagcga tcaaagccgg
     2221 cgcttattac tacctcgaga aaccttacac acccgatcgc ctgttcgccc tcgtcgatcg
     2281 cgctctgcag ttagcggctt tgagacacga gaacgaatca ctcaagcgaa cactcgccgg
     2341 cgatagtgaa acgtttggca tgatcggacg cgatccgaag atgtgccaga tcttcgaaac
     2401 cattcgcact gccgcgcctt ccgacgcgtc cgttttgatc gaaggcgaga gtgggacagg
     2461 aaaagaattg atcgcggcgg cgtttcacac gcagagccag cgcgcggatg gaccattcat
     2521 tcgcatcaac tgcgcggcga ttccacacga gctcatcgag tcagaattgt ttggttacaa
     2581 aaaaggggct ttcaccggcg ccgatcgcga taaacgcggg ctcatcgaag ccgcgaacca
     2641 gggcacgttg ctgctggacg agatcgcgga aatgccggcg cacctgcaaa cgaaactgtt
     2701 acgcgtgttg caggaacgaa agctgcgtcg cctcggcgat gaacatgaga tcagcgtcaa
     2761 cttccgtttg gtgtccgcca caaaccgaaa cacgcaggcg cttttggacg aaggactgtt
     2821 gcgcaaggat ctctacttcc gcatcagcac gatcaagatc cgcgttccgc cgctgcgcga
     2881 acgtctcgac gacgtgccgt taatcgccgg acgttttctc aaacgcttca acgaacagta
     2941 cgggaagaga atccaggacc tcgcgccgga aacagtgatg cgtctggtcc gttacgactg
     3001 gccgggcaac attcgccagc tcgaaagcgt tatcgaacgc gcggtgctgt tttgtccggg
     3061 ccctgaattg caaccgaatt gtctgcccga ggaatttcaa acgcgggcgg ccagctcggc
     3121 ctttattatt cctccgctgc tgcctatgga agagatcgag cgcgaagcga tcatgcaaac
     3181 tctcgaacgc accgctggta acgtaaagaa gagcgcgcaa atccttcgtt ttccacgccc
     3241 cacgttctat cgcaaactca agaaactcgg catcaaggtt gaacgccccg atccgcccgt
     3301 cgcggcgaaa ccctgaagaa atggcggtgt tgtgtccgac tcctcaacaa acgataactt
     3361 acgcatcctc atagttgacg atgaaccttc agtaggcgac gccctcaggc tggtgctcga
     3421 ggcgcagggc tacgaagtcg tgcttgttac taacggccgt gatggcatcg atcaggcgcg
     3481 caaccggcgc ttcggttttg gtgtggtcga tctgtttttg acggacgtct ccggttttca
     3541 ggtcatcacc gatctgctca ccgtccaacc gcagataccg atccttctga tcaccgccca
     3601 cggcagtccg caagtcttcg ccgaagcaaa aaaactcggc gccatcggcg ccctcgcaaa
     3661 accatttcac ccctcagaaa tcctcagcct gatcgctact cacgtccatg aacccaaccg
     3721 gaaaagcttg acatgaaacg ccggcgggag tagatgtgct tccgccccgc tttgtttttt
     3781 gggctggtcc tcagaggctg cacacatact cattcctcag accaaccccg cagcaaacca
     3841 agccttaggc ttttcaagga gttaactcat catggcagaa aagaaatcaa cctcaacaac
     3901 aacaacaact atctctgaaa agggtccgag tgggagcgaa ctttggacgc gcgacttaca
     3961 gcgcgcaaca agtcccgggc gcagtgatca tcttcgcgac cggctgccac ccaaccacgg
     4021 gctacgtaga cttttttgaa caatcaccgc tgcggatctt tccgccgcag tttatcttcc
     4081 ggacgattcc gccgacggga atggtccttc aagtgataac gccgttttcg atctgggtaa
     4141 tgtttggcgc aagtgatccg gtagaaaccg tcaccgtgtt cgacgccgac ggttcgcatg
     4201 agatcaaagt ggaacaagtg ccggaccttg cggccgataa atcggcaacg tggctcagcg
     4261 gaagcgtcat gcgaagcgac gggcagggaa gcgggcaatt gaccgcagcc gccgtcgcgg
     4321 atcgcgcaac cacgatggcc acgggcgagg aaggtggagg cccgacgacg atggccaccg
     4381 gtgaagaaga cgtcagggct ccaaccacga tggccgtagg cgaagaaggt ggtggtccaa
     4441 cgacgatggc tgtcggtgaa gaagacgcaa gactcgcaac taccttcgct ctcggcgaag
     4501 aaggaccagc accgacgaca atggcgctcg gcgaagaagg accagtcttc acg
//
LOCUS       DASWTX010001255         3094 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_15191, whole genome shotgun sequence.
ACCESSION   DASWTX010001255 DASWTX010000000
VERSION     DASWTX010001255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3094
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15191"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1239
                     /locus_tag="VGD38_19085"
     CDS             <1..1239
                     /locus_tag="VGD38_19085"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEY0730198.1"
                     /translation="SGELKTAEGYSLQPLTTLLLLGAFSNGCAALTGIEAISNGVPAF
                     KKPEAKNAATTLVWMAVLLTAMFLGTSLMAFLYHVHPHANETVISQFARIMFSGGLGW
                     FYYVVQAATAAILVLAANTSFADFPRLSSLLARDRFLPRQFANRGDKLVFSNGIIILA
                     VFSGALVVVFGGDTSRLIPLYAVGVFLSFTLSQLGMVRHWYATKSPRWKKSIVVNAVG
                     AVATFVVLCVFIITKFVHGAWIVVVVIPLLVALFRAIHQHYLSVAKQLSIEGLEQLHP
                     LRHSVIVPISGLHRGVITALEYAKSISRDNNLTAVYVDFDEEATAKLREKWERWGTGV
                     ELVVLPSPYRELTRPLLKYIKRLERQEHDDVITVVLPEFIPAKWWQHMLHNQSSLLLK
                     AALLFREGVIVTSVPYHLKH"
     gene            complement(1240..2694)
                     /locus_tag="VGD38_19090"
     CDS             complement(1240..2694)
                     /locus_tag="VGD38_19090"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY0730199.1"
                     /translation="MQVFKNYINGEWTESGSGKTFPNINPANTDEIIGNFQASNADDV
                     NDACDAAVAAQQAWADLPATRRGEYLFKAAELLEARLAQLGEEMTREEGKTLPEAIGE
                     VKRAINIFRYFGGEGSRQFTYQVPSERENVVCYTIRKPLGTVALITPWNFPSAIPAWK
                     LAPALVSGNTVVLKPASLAPLSSYRLVEALHEAGIPRGVLNYVTGSGGAVGDPLTSHP
                     AVKAISFTGSTSVGNALYAKVSERKIRIQLEMGGKNPTIVLSDADLDYAADTLINGAF
                     FSTGQKCTACSRAVIERSIFEPLVKKLIEKTRKLKVGNGLEQGVQIGPAVDADQLQTD
                     LDYIEIAKKEGAELLCGGSRLTGGAYDKGYFIEPTIFTGVNSEMRIAQEEVFGPVLAL
                     MVADDLDDAVRIANDVKFGLSASIISKDLTRVHQFINRIEAGLITVNLPTAGVEYQLP
                     FGGTKESSYGMREQGPQALDFYSETRTVYLKYTQ"
     gene            complement(2704..>3094)
                     /locus_tag="VGD38_19095"
     CDS             complement(2704..>3094)
                     /locus_tag="VGD38_19095"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEY0730200.1"
                     /translation="SIEERKARVLELTGGFGADVVLECVGIPPAVPEGLELCRDGGRY
                     LVLGHYGNAGPIPINPHVITRKQLIVAGSWGFEPRHTRAALAFLSRTREQFPFEQLTG
                     TPFPLDRAFEALQATASWTTAKSTIAP"
BASE COUNT          568 a          871 c          929 g          726 t
ORIGIN      
        1 agcggagaac tgaagacagc cgaaggctac agtttgcagc cattgaccac actgcttctg
       61 ctcggcgctt tttcaaacgg ctgtgcggcg ctcaccggca tcgaagcgat ctccaacggc
      121 gtgcccgcgt tcaaaaaacc tgaagcgaaa aacgcggcga cgacactcgt gtggatggcc
      181 gtcctgttga cggcgatgtt tctcggcacg agcttgatgg cttttcttta tcacgttcac
      241 ccgcacgcga atgaaaccgt gatttcgcag ttcgcgcgca tcatgttttc cggcgggctg
      301 ggctggtttt actacgtggt ccaggctgcg accgccgcca ttctggtgct ggcggcaaat
      361 acttctttcg cggattttcc gcgtctctcg tcgttgcttg cgcgcgatcg ttttctgccg
      421 cgacagtttg ccaaccgcgg cgacaagctc gtcttctcaa acggcatcat cattcttgcg
      481 gtcttttcgg gagcactcgt cgtcgtgttt ggcggtgata caagccgttt gattccgctg
      541 tatgccgtcg gtgtgtttct ctcgtttact ctctcgcagc tagggatggt gcgtcactgg
      601 tatgcgacta agagcccgcg ctggaaaaag tcgatcgtcg ttaatgccgt gggtgcggtt
      661 gcgacattcg tggtgttgtg cgtcttcatc atcacgaagt ttgttcacgg ggcgtggatc
      721 gtcgtcgttg tgattccgct gctggtagct ctgtttcgcg cgattcacca acactatctc
      781 agcgtggcga aacagctctc gatcgaaggg ctggagcaac tccacccgct gcggcacagc
      841 gtcatagtcc caatctccgg cttgcaccgt ggggtgatca ccgcgctcga gtacgcgaag
      901 tcgatctcgc gcgacaacaa tctcactgct gtttatgttg actttgacga agaagcgacg
      961 gccaaactgc gcgagaagtg ggaacgctgg ggcacgggcg tggagctggt ggtcctgccg
     1021 tcgccttatc gcgagctgac gcgtccgttg ttgaagtaca tcaagcgact cgagcggcag
     1081 gagcacgacg acgtgatcac ggttgtgctg ccggagttta ttccggcgaa gtggtggcag
     1141 cacatgctgc acaaccaaag ctcgttgctg ttgaaagccg cgttgttgtt cagagaaggc
     1201 gtgatcgtca cgagcgtgcc gtatcacttg aagcactgat cactgcgtgt actttagata
     1261 aacggtgcgc gtttcggagt agaagtcgag ggcttgcggg ccttgttcgc gcatgccgta
     1321 gctcgattct ttggtgccgc cgaaaggtaa ctgatattcg acgccggcgg ttgggaggtt
     1381 cacggtgatc agtcccgctt cgatgcggtt tatgaactgg tgaacgcgcg tcaggtcttt
     1441 cgagatgatt gacgcggaga ggccaaactt cacgtcattt gcgatccgca cggcgtcgtc
     1501 gagatcgtca gccaccatca gcgcgagcac tggaccgaag acctcttcct gcgcgatgcg
     1561 catttcagaa ttgacgccgg tgaagatcgt cggctcgatg aagtagcctt tgtcgtaagc
     1621 gccgccggtc aggcgactgc cgccgcacaa cagttcggcg ccttctttct ttgcgatctc
     1681 gatgtagtcg agatcggttt gaagttgatc ggcgtcgaca gccgggccga tctgtacgcc
     1741 ctgctcgaga ccgttgccga ctttcagttt ccgtgttttc tcgatgagtt ttttgacgag
     1801 cggttcgaag atcgagcgct cgatcacggc gcggctgcac gcggtgcatt tctgtcccgt
     1861 cgaaaagaac gcgccgttga ttagcgtgtc cgcggcgtag tcgagatcgg cgtcgctgag
     1921 aacgatcgtc gggttcttgc cgcccatttc gagttgaatg cgaatctttc gttcagaaac
     1981 tttcgcgtag agcgcgttgc cgactgaggt tgagccggtg aatgaaatcg ctttgacggc
     2041 cggatggctc gtgagcggat cgccgaccgc gccgccgctg cccgtgacgt agttgagcac
     2101 accacgcgga atgcctgctt cgtgcaacgc ctcgaccaag cgataagagc tgagcggcgc
     2161 gagcgatgcg ggtttcagta cgaccgtgtt tccggagacg agcgcgggcg cgagtttcca
     2221 tgcgggaatc gcactcggaa agttccaggg cgtgatcaac gcgacggtcc cgagtggttt
     2281 gcggatcgtg tagcacacga cgttctcgcg ctcggacgga acctggtaag taaactggcg
     2341 cgagccttcg ccgccgaagt aacgaaagat attgatcgca cgcttcactt cgccgatcgc
     2401 ctccggcagt gtcttgcctt cttcgcgcgt catctcctcg ccgagttgcg cgagacgcgc
     2461 ttcgagaagt tcagcggctt tgaagagata ctcaccgcgg cgtgtcgcag gcagatcggc
     2521 ccacgcttgt tgcgcagcca cggcagcgtc gcacgcatcg tttacgtcat ctgcattcga
     2581 cgcctgaaag ttaccaatga tttcgtcggt atttgccggg ttaatgttcg gaaaggtttt
     2641 tcctgagccg ctctctgtcc actcgccgtt aatgtaattc ttgaaaacct gcatgctctt
     2701 ctcctaaggt gcgattgtgc ttttggcggt ggtccacgac gcggtcgctt gtagcgcctc
     2761 aaacgcgcgg tccaacggaa acggcgtccc tgtaagctgc tcgaaaggaa actgttcgcg
     2821 agtgcgcgac agaaacgcca gcgccgctcg cgtgtgacgc ggctcgaacc cccacgaacc
     2881 ggcaacgatc agttgttttc tcgtgattac gtgtggattg atcggaatgg ggcccgcgtt
     2941 tccgtagtgg cccaacacga ggtagcgccc gccgtcgcga cagagttcga gtccttccgg
     3001 aactgccggt ggaatcccga cgcactccag cacgacgtcc gcgccaaacc cgccagtcag
     3061 ctcgagcaca cgagcctttc gttcttcgat cgag
//
LOCUS       DASWTX010001256         2572 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_303017, whole genome shotgun sequence.
ACCESSION   DASWTX010001256 DASWTX010000000
VERSION     DASWTX010001256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2572
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303017"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..895
                     /locus_tag="VGD38_19100"
     CDS             <1..895
                     /locus_tag="VGD38_19100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="chitinase"
                     /protein_id="HEY0730201.1"
                     /translation="DMGLTVSWQLLNIQQQSGIKVFTLGFIVGNGGCTPTWGGVGATV
                     ANDTLPNGTTILSLVQGVRAAGGDVIISFGGASGTELALGCTTVSSLQAAYQSVLNKY
                     SVNSSTPVRLDFDIEGGATTDQASINRRNQALVGLKAANPNLVISYTLPVLPTGLVAS
                     GVNILNSVKAAGLNVNVINVMAMDYGSANDNGGQMGLSATQAAANTHNQVVAAGLTSS
                     IGVTPMIGINDVNTEIFQLSDAQMLLNFANSNSYITRLSMWSVARDNGSCPNQGFASP
                     VCSGISQSNWAFSNIFKPFAP"
     gene            complement(1090..1308)
                     /locus_tag="VGD38_19105"
     CDS             complement(1090..1308)
                     /locus_tag="VGD38_19105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730202.1"
                     /translation="MRLLLGPLLGQPGKTLAQPGSVAEAAERKALKYTEEVLRKENRF
                     GVSLSTPLTDMGKTMQSLITRGMDLYNQ"
     gene            1374..>2572
                     /locus_tag="VGD38_19110"
     CDS             1374..>2572
                     /locus_tag="VGD38_19110"
                     /inference="COORDINATES: protein motif:HMM:NF028457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5117 domain-containing protein"
                     /protein_id="HEY0730203.1"
                     /translation="MIKGLFTLYRTDEKVFLEILPEQLEKIYLVSMTIDSGIGERGFY
                     AAAMAGEAPFVFHKQGKNIQLVVKNTRFVADNGPMQRAVARSFSDSILGITKIESLPH
                     PERKSILIDLGAFMLTDLPMMSYNLEATFRIPYRFDPKNSVFGTLKGFPQNVEIETLA
                     HYATERPPLPPMLPAGAPPPPMPPPPANIPDVRSMLFHLRYSISERPQTGFRPRLADA
                     RVGHFVNSIEDYSNDDRSTTTKRLVNRWHLVKQDPSAALSPPKQPIVFWLENTIPVKY
                     RDAIRDGVLMWNKAFERIGFQNAIEVKQQPDDADWDPGDTRYSTIRWFAGYPDPGFAQ
                     GPSRTDPATGQIYDADIRFSEAMTRFSRREVHEHINPSAMPWEYSAPRTFVAPWSVMN
                     AHYQCDFA"
BASE COUNT          573 a          758 c          693 g          548 t
ORIGIN      
        1 ggacatgggt cttacggtta gttggcagct cttaaacatt cagcagcaat ccggaatcaa
       61 agtctttact ctcggattca tcgtcggcaa tggcggctgc acgccgacgt ggggaggtgt
      121 gggagctacc gtcgcgaatg acacgttgcc caacggcacc acgattctct cgctggtcca
      181 gggggtacgt gctgccggcg gcgatgtgat catctccttc ggcggcgcgt cgggaactga
      241 attagcactc ggatgcacca cggtgtcgag tctgcaggcg gcttaccaat cggtgctcaa
      301 taaatacagt gtgaacagca gtacaccggt gcgactcgac ttcgacatcg aaggcggagc
      361 aacgaccgat caggcttcga ttaaccgtcg caatcaggcg ttagtcgggc tgaaggccgc
      421 gaatccgaat ctggtcatct cgtacacctt gccggttctg ccgacgggtt tggtggcgag
      481 cggtgtgaac attctcaaca gcgtgaaagc cgcgggtctt aacgtgaacg ttattaacgt
      541 catggccatg gactacgggt cggccaacga taacggcggt cagatgggac tcagcgcgac
      601 acaagccgcg gcgaacacgc acaaccaggt cgtcgcggcg gggttgacct cgtctattgg
      661 cgtgacaccg atgatcggaa tcaacgacgt caacaccgaa atctttcagt tgagcgacgc
      721 gcaaatgctc ttgaacttcg ccaactcaaa cagctacatc acccggctct cgatgtggtc
      781 agtggcgcgg gacaacggca gttgcccgaa ccagggcttt gcttcgcctg tttgtagcgg
      841 tatttcgcag agcaattggg cgttttcgaa tatcttcaag cctttcgcac cgtaacctgc
      901 cgggtacggt tgcgtaccga aagtgatcac cgggtgagtt ttttgtccag acgacaagta
      961 actcacccgg aaaacctcac aaactttctt taccttttcc gtcaatccga gtaataattc
     1021 ggcccttcaa acgttgtctc actgcggctg ctctaaatcc gtttcacttc ccggtgtgga
     1081 tctcggcccc tactggttgt aaaggtccat cccgcgggta atcaaagact gcatagtctt
     1141 ccccatgtcg gttaaaggag tagataatga aacaccgaac cggttttctt ttctcaatac
     1201 ctcttctgtg tacttcaatg cttttcgctc agcagcctca gcaaccgagc ccggctgcgc
     1261 caacgtcttc cccggctgcc caagcagcgg ccccaacagc agacgcaaag aggccggcgc
     1321 agcctgagcc accgaaagaa aaagcgtttg ccgaggtcgt caaagacgcc caggtgatca
     1381 agggcctctt taccctctac cgcacggacg aaaaagtctt tctcgagatt ctgcccgagc
     1441 aactcgaaaa gatttatctc gtgtcgatga cgattgattc cggcatcggc gagcgtggtt
     1501 tctatgccgc cgcgatggcc ggtgaggcgc cgtttgtttt tcacaagcag ggaaaaaaca
     1561 tccagctagt ggtcaagaac acgcgcttcg ttgccgataa cggcccgatg cagcgcgccg
     1621 tcgcaagatc cttcagcgac tcgatcctcg gcatcacgaa gatcgagagt ctgccacacc
     1681 cggaacgcaa gagtattctt atcgatctgg gcgccttcat gctcaccgat ctgccgatga
     1741 tgagctacaa cctggaagcg acgttcagaa ttccttatcg cttcgatcca aagaacagcg
     1801 tcttcggcac actcaaggga ttcccgcaga acgtagaaat cgaaacgctc gcgcattacg
     1861 caacggaacg tccgccactt ccacccatgc ttccggccgg cgcgccgcca ccgccgatgc
     1921 cgccgccacc ggccaacatt ccggacgtgc gcagcatgct ctttcacctg cgctacagca
     1981 ttagcgagcg gccgcaaacc ggcttccgcc cgcgtctcgc agacgctcgc gtcggtcact
     2041 tcgtcaattc aatcgaggat tacagcaacg acgatcgttc aaccaccacg aagcgcctcg
     2101 taaatcgctg gcacctggtg aaacaggatc cgtcggcggc gttgtcgcct ccaaagcaac
     2161 cgatcgtgtt ttggctggag aatacgatcc cggtgaagta tcgcgatgca atccgcgacg
     2221 gcgtactcat gtggaataaa gcgttcgagc ggatcggttt tcagaatgcg attgaagtaa
     2281 agcagcagcc cgatgatgcg gattgggatc ccggcgacac tcgttacagc acgatacgct
     2341 ggtttgcggg ttacccggac cccggtttcg cgcagggacc gtcgcgtacc gatccggcca
     2401 ctggtcagat ctacgacgcc gacattcgct tctcggaagc gatgactcga ttctcacgcc
     2461 gcgaagtgca cgagcacatc aatccgtctg caatgccgtg ggagtattca gctccgcgaa
     2521 cgttcgtcgc gccgtggagt gtgatgaacg ctcattatca atgcgatttc gc
//
LOCUS       DASWTX010001257         1516 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_188595, whole genome shotgun sequence.
ACCESSION   DASWTX010001257 DASWTX010000000
VERSION     DASWTX010001257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188595"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1516
                     /gene="lptD"
                     /locus_tag="VGD38_19115"
     CDS             <1..>1516
                     /gene="lptD"
                     /locus_tag="VGD38_19115"
                     /inference="COORDINATES: protein motif:HMM:NF016348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0010033 - response to organic substance
                     [Evidence IEA];
                     GO_process: GO:0061024 - membrane organization [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HEY0730204.1"
                     /translation="QTLGRSADFTFRSDVYTQRGLGFGGDLRTRANSRSYLNFGFYAV
                     KDRIFGPEEDEAHPDQGGSSIYVDGVHYFKNGFIAAADVNITSNLAFRQVFSDNIQQA
                     ISPEETSQVFVNKDHNEYSFNFLARTQVTSLTNARIRIRQLPSISIDKRPTIVSFLKK
                     LPVYFSFSGAAEGVSRKETVEDLTQFIIDVGGNPIVSPSIVQRLDLNPRLELPLSFAG
                     WSVTASGSGRVTFYSNSLEPATRDVLSRNITRSYGEFELDVRPPAFAKDFRRGDGAFW
                     FRHVIEPYVQYRKITGINDFNQIIRFDYVDAIADTNEIEFGIANRFFTRRSTENVADV
                     PVKEIPGRERPLLSSQPYEALTITIRGKYFFDPFFGGALIPGQRNQFYPINTLSGFVY
                     GGVPRRFSPINVDARYRPRRNLFVDVRSDIDTRGGGMRSLSTTFGLNRSLIQVFQSFY
                     YTRAIELVPSLARFQDSRGLGLEAGTLRGSQWSPSVFLGNMERGLFGGASFFFDF"
BASE COUNT          284 a          482 c          412 g          338 t
ORIGIN      
        1 tcaaacgctc ggtcgttcag ccgacttcac ttttcgcagc gacgtctaca cgcaacgcgg
       61 tctcggcttc ggcggcgacc tgcgcacacg cgccaattca cgttcctatc tgaacttcgg
      121 tttctacgcg gtcaaggatc gcatctttgg accagaagaa gacgaggcgc atcccgatca
      181 gggcggttcg agtatttacg tcgacggcgt acactacttc aaaaacggtt tcatcgccgc
      241 cgcggacgtg aacatcactt cgaacctcgc gtttcgccag gtcttctccg acaacattca
      301 acaggcaatc tcgccggaag agacgtcgca ggtcttcgtc aacaaagatc acaacgagta
      361 cagcttcaac ttcctcgcgc gcacgcaggt cacgtcgctc accaacgcgc gcattcgcat
      421 ccggcagttg ccgagcatct cgatcgacaa gcgtccgact atcgtcagct ttctgaaaaa
      481 gctgccggtc tacttttctt tcagcggcgc ggcggaaggc gtgagccgca aggagacggt
      541 cgaagatctg acgcagttca taatcgacgt cggcggcaat ccgattgtct cgccgtcgat
      601 cgtgcaacgc ctcgatctga atccgcggct tgaactgccg ttgagctttg ccggttggtc
      661 cgtgactgct tccggctcgg gacgcgtcac gttctattca aactcactcg agcccgcgac
      721 acgcgacgtg ctcagccgca acatcacgcg ctcgtacggc gagtttgagc tcgacgtgcg
      781 gccacccgcg tttgcgaaag acttccgccg cggcgacggc gccttctggt ttcggcacgt
      841 gatcgagcct tacgtgcagt atcgcaagat cacgggcatt aacgacttca atcagatcat
      901 tcgcttcgac tacgtcgacg ccatcgccga caccaacgaa atcgaattcg gcatcgcgaa
      961 ccgtttcttc acgcgccgct cgaccgagaa cgtcgccgac gttcccgtga aagagattcc
     1021 cggacgcgag cgacccttgc tttcgagtca gccttacgaa gcgctcacga tcacgatccg
     1081 cggcaagtac tttttcgatc cgtttttcgg cggcgcgttg atccccggtc agcgcaacca
     1141 gttttatccc atcaacacgc tttcaggatt tgtttacggc ggcgtgccgc gacggttctc
     1201 gccgatcaac gtcgacgcgc gctatcgtcc gcgtcgcaat ctgtttgtcg acgtgcgttc
     1261 cgatatcgac acgcgcggcg gcggcatgcg ctcgctctcc accaccttcg gcttgaaccg
     1321 ttcgctgatt caggtctttc agagtttcta ctacacgcgc gcgatcgagc tggtcccgag
     1381 tcttgcgagg ttccaggact cgcgcgggct cggactcgag gcgggtacgt tgcgcggttc
     1441 gcagtggagc ccgtcagtct ttctgggaaa catggagcgc gggcttttcg gcggcgcgtc
     1501 gttctttttc gacttt
//
LOCUS       DASWTX010001258         2814 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_61143, whole genome shotgun sequence.
ACCESSION   DASWTX010001258 DASWTX010000000
VERSION     DASWTX010001258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2814
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61143"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..279
                     /locus_tag="VGD38_19120"
     CDS             <1..279
                     /locus_tag="VGD38_19120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730205.1"
                     /translation="LGLALHFLIATTWTVVFYFVSRKLRFLIEQPVVWGLIYGVVVYA
                     VMNFVVLPLSQFPPSRTPPTLTGRLIGLVIIMFFIGLPIAVIVRRFSR"
     gene            283..807
                     /locus_tag="VGD38_19125"
     CDS             283..807
                     /locus_tag="VGD38_19125"
                     /inference="COORDINATES: protein motif:HMM:NF024637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-ribbon domain-containing protein"
                     /protein_id="HEY0730206.1"
                     /translation="MYCPNCGKQTSADQKFCRACGLGLEKIALSLGEQLPARVDQSLL
                     ARQERLEKLGVGALSVFGLGILGFLIYAVAQKLAASQGSLIAILAIIGLVIMLGSGLL
                     SVILFARAKELKEEASKRQPQPNEIETGASTKELLTEGRFEPVPTVTERTTELLFAEK
                     RNTKKSKKESGDFA"
     gene            804..2138
                     /locus_tag="VGD38_19130"
     CDS             804..2138
                     /locus_tag="VGD38_19130"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0730207.1"
                     /translation="MRKLWLLLLILTAFTNLNAQSNVKALVGGTLIDGYGSKPIRNSV
                     VIIEGERIKAVGQLGTLAIPRGAEVISTEGMTVLPGLWDMHVHLMINGHSDYAHWDKT
                     YPPQMESVIMPASAKQLLMAGVTSARDLGAPLKASIAVRDRIRKGEIPGPTLYVSGPF
                     IQHEPYPGTDYVRWGVKGADDARAKVRQLADAGVDVIKLIDQDLMTMEEVQAVVDEAH
                     KRRLPVVAHSHRPEEIRRGLLVGVDCFEHTGLATAPEYPAELIALIRERTAQMSLGPL
                     FWTPTVQGLLNYEYVRDNPEQLDDPSWQVGLPQSIVDDIKASLKTPDRLSYYQITPMR
                     RPTLARKIQQLSESGVVLLIGTDSGIPMNFHSQTTWRELDAWVHAFGLDPMVAIRAAT
                     YWPSVAMRVSDQVGTVSEGKYADIIAVRGDVLRNINLLQNVDIVIKHGRRWK"
     gene            2138..>2814
                     /locus_tag="VGD38_19135"
     CDS             2138..>2814
                     /locus_tag="VGD38_19135"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY0730208.1"
                     /translation="MTIQLRSMTPEDVEPCGRICYEAFRGIAEKHNFRKDFPVPEAAI
                     ELMRMLLENPGAFNVVAESDGKVIGSNHLAEFDAVRAVGPITVDPNAQAKGAGRMLME
                     AVIERGRGAPSIRLLQDSFNAASLSLYASLGFDVKEPVVVIEGAVKGEVSSEFEVRPI
                     REDDYESCAELCRSVHAFDRINELKHSPPMPHPFVALRGGRITAYISTPQFWAINHAV
                     AETDRDM"
BASE COUNT          597 a          780 c          840 g          597 t
ORIGIN      
        1 ctcggtctcg cgctgcactt cttaatcgcc accacgtgga ccgtcgtctt ttattttgtg
       61 agtcgcaagt tgcggtttct tatagaacag cctgttgtgt ggggtctgat ctacggcgtc
      121 gtggtctacg cagtcatgaa cttcgtcgtg ctgccgttgt cgcagtttcc accgtcgcgt
      181 accccgccaa ctcttacggg tcgtctcatt ggtctcgtga ttatcatgtt ctttatcggt
      241 ttgccgatcg ctgtaatcgt gcggcgcttt tccaggtagc ttatgtattg cccaaactgc
      301 ggaaaacaaa cctcagccga tcagaagttt tgccgcgcgt gcggtcttgg tttggagaag
      361 atcgctcttt cgctcggcga acaactgccg gcgcgagtag accagagtct gcttgcgcga
      421 caggaacgtt tggagaagct gggcgtcggc gcgttgagcg tgttcggttt gggcatcctt
      481 gggtttctga tttacgccgt cgcgcaaaag ttggcggcgt cgcagggaag tctgatcgcg
      541 attctcgcca tcatcggttt agtgatcatg cttggcagcg gtttgctgtc agtgatcctc
      601 ttcgcccgcg cgaaagagtt gaaagaagag gcgagtaaac gccaaccgca accgaatgaa
      661 atcgaaaccg gcgcgtcgac gaaagagttg ctgacggaag gcaggttcga acccgtccca
      721 acagtgaccg aacgcaccac cgaactgctg ttcgcagaga aacgcaacac aaagaagtct
      781 aaaaaagagt cgggagactt cgcatgagaa aactgtggct ccttctgctg atactcaccg
      841 ccttcactaa tctgaacgca caatcaaacg tcaaagcact cgtcggcggc acgctgatcg
      901 acggttacgg cagcaagccg atccgcaaca gcgtcgtgat catcgaaggc gagcgcatca
      961 aggctgtggg ccaactcggc acgctcgcga ttccgcgcgg cgcggaagtg atctcgaccg
     1021 aaggcatgac tgtgttgccc ggactgtggg acatgcacgt gcatttgatg atcaacggcc
     1081 acagcgacta cgcgcattgg gacaagacgt atccgccgca gatggagtcg gtgatcatgc
     1141 cggcgtcggc gaaacagttg ctgatggcgg gtgtgacgag tgcgcgcgat ctcggcgcgc
     1201 cgttgaaggc gagtatcgcg gtgcgcgatc gcattcgcaa aggtgagatt cctggtccaa
     1261 cgctttacgt gtcgggcccg tttattcagc acgagccgta tcccggcact gactacgtgc
     1321 gctggggcgt gaaaggcgct gacgatgcgc gcgcgaaagt gcgccagttg gcggacgccg
     1381 gcgtggacgt gatcaagctg atcgatcagg acttgatgac gatggaggaa gtgcaagcag
     1441 ttgttgacga agcgcacaaa cgcaggttgc cggtggtggc gcactcgcat cgtccggaag
     1501 agattcggcg cgggttgctg gttggtgttg attgtttcga acacaccggg ctcgcgaccg
     1561 cgccggagta tccggcggaa ctgatcgcac tgattcgtga gcggacggcg cagatgagtc
     1621 ttggtccatt gttctggacg ccgacagtgc aggggctttt gaattacgag tacgttcgcg
     1681 acaatccgga gcagcttgac gatccgtcgt ggcaagtcgg tctgccgcag tcgatcgtcg
     1741 acgacatcaa agcttctttg aaaactcccg atcgcttgtc ctactaccag atcacgccca
     1801 tgcgccgtcc gacactcgcg cgcaagattc agcaactctc cgaatcaggc gtggttttat
     1861 taatcggcac cgacagcggc atcccgatga acttccacag ccaaaccacg tggcgcgaac
     1921 tcgacgcctg ggtccacgcc ttcggcctcg accccatggt cgccatccgc gccgcaacct
     1981 attggccctc agtcgcaatg cgcgtttcgg atcaagtcgg caccgtaagc gaaggcaagt
     2041 acgccgacat catcgccgtc cgcggcgacg ttttacgcaa catcaatcta ttgcagaatg
     2101 tagacatcgt gatcaagcac ggacgaaggt ggaagtgatg accattcaac tacgttcaat
     2161 gacgcccgaa gacgtcgagc cgtgtggcag gatctgttat gaggcgttca gggggattgc
     2221 tgagaagcac aactttcgaa aagactttcc cgttcctgag gcggcgatcg aactgatgcg
     2281 catgctgctc gagaatccgg gcgcgttcaa tgtcgttgcg gagagcgatg gaaaggtgat
     2341 tgggtcgaat catctggcgg agtttgatgc cgttcgtgcg gttggaccaa tcacggtcga
     2401 tccgaacgcg caggcgaagg gcgcaggccg gatgttgatg gaagcggtga tcgaacgcgg
     2461 ccgcggcgct ccaagcattc gcttgcttca ggactcgttc aacgccgcct cgctctcgct
     2521 ctatgcgtcg ctcggcttcg acgttaaaga gccagtcgtg gtgatcgaag gcgcagtgaa
     2581 aggagaagtt tcgtctgaat tcgaagtcag accgatcagg gaagatgatt acgaaagttg
     2641 cgccgagttg tgccgctcag tgcacgcctt cgaccgcatc aacgaactca agcacagtcc
     2701 accaatgccg catcccttcg tcgccctgcg cggtggccgc atcacagcct acatctcgac
     2761 accgcaattc tgggccataa accacgccgt cgccgaaacc gatcgcgaca tgca
//
LOCUS       DASWTX010001259         1751 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_236276, whole genome shotgun sequence.
ACCESSION   DASWTX010001259 DASWTX010000000
VERSION     DASWTX010001259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236276"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            247..870
                     /locus_tag="VGD38_19140"
                     /pseudo
     CDS             247..870
                     /locus_tag="VGD38_19140"
                     /inference="COORDINATES: protein motif:HMM:NF014879.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucomutase/phosphomannomutase family
                     protein"
     gene            937..1164
                     /locus_tag="VGD38_19145"
     CDS             937..1164
                     /locus_tag="VGD38_19145"
                     /inference="COORDINATES: protein motif:HMM:NF012626.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730209.1"
                     /translation="MPVLQEKLKEEPASVGGRKVKSINRIDGVKIIFEDDSWLLVRPS
                     GTEPLVRIYAESESAKDVEVLLEQGRKYLLG"
     gene            1133..1552
                     /locus_tag="VGD38_19150"
     CDS             1133..1552
                     /locus_tag="VGD38_19150"
                     /inference="COORDINATES: protein motif:HMM:NF016839.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HEY0730210.1"
                     /translation="MSKVANTYWVDERIRSQRVLPRSANASLASMQQISAEIIGSRAD
                     VRRRGGIIPSWVVFGMILLATFAVCVTVNMRTRAKFQVAAQQFSVMQSDVETLRNINE
                     SLKAEVEQLRNDPRAIESAARARLNMVRSNEYVVPID"
BASE COUNT          376 a          478 c          537 g          360 t
ORIGIN      
        1 ccgacgccca cgccgacagt ttcgcacgcg atccgttcgc aaaacgcgat ctgcgggatc
       61 aatttcacgg cctcgcacaa cccgcccgag tacagcggga tgaagctttc gaccgcggac
      121 ggcgccccgg cgctgccggc agtcaccagc aaaattgaag aattgtgagg gaatccggtc
      181 gaaaaccggc ccaagagcgc cgcccaaaag ggttcgaaga gctttgaccc gcgcgatgcg
      241 tacctcgcgg atctcgaaca gaaggttcgg ttcgacctga ttagcaaagc cggtggacgc
      301 tacgcctacg acccgctttg gggaaccggc cgcggctatc tcgacgaact gctgcggcgt
      361 cacggtttgg acgtcacgac gatccataac tggcgcgacg tgctgtttgg cggccgtgcc
      421 ccggaaccgg aagccagcca tttgggagag ttacgcgagt tggtgctcgc ggacaagtgc
      481 gttctcgggc tggcgactga cggcgacggc gatcgctttg gcgttatcga tgcgaacggc
      541 cagttcatca cgccgaacca gctcatcgcg atactttttg attatctggc tgagtcgagg
      601 aattggaatg ggggcgttgc ccggtcggta gccacgtcgc atctggtgga tcgggtcgct
      661 aaatctcatg ggttaccggt ttatgaaaca cccgtcggtt tcaaatacat cggagagcta
      721 atcaatgagg acaagattat cctcggcggc gaagagtcgg ccgggttgtc gatcaaaggt
      781 cactatccgg agaaagatgg cctcctggcg tgtctccttg cagcggaggc ggttgcggca
      841 cgcagcgcgt ccctgagcga acaactggat cagctcttcg cgcaaactgg acggctcgag
      901 tccggacgaa tcggcgtgaa actcacgccc gagctgatgc cggtgttgca ggaaaagttg
      961 aaagaggaac ccgcctctgt tggcgggcgg aaggtgaaat caatcaaccg catagacggt
     1021 gtaaagatca tattcgagga cgattcgtgg ctgttggtgc gtccttcggg aaccgaaccc
     1081 ctagtacgta tttacgcgga gtcagaatcg gcaaaggacg tggaggtgct acttgagcaa
     1141 ggtcgcaaat acttactggg ttgacgaacg aatcagatcg cagcgcgtgt tgccgcgcag
     1201 cgcaaacgct tctttagctt ctatgcagca gatctcggcg gagatcattg gcagccgcgc
     1261 cgacgtgcgg cgccgcggag gaataatccc ctcgtgggtt gtgttcggca tgattttgct
     1321 ggccacgttt gccgtctgtg tgacggtgaa catgcgcacg cgcgcgaagt ttcaggtcgc
     1381 ggcgcagcag ttttcagtta tgcaatcgga cgtggagaca cttcgcaata ttaatgagtc
     1441 gttgaaagcg gaagtcgaac aacttcgcaa cgatccgcgg gccatcgagt cggccgcacg
     1501 cgcgcgcctg aacatggttc gcagtaacga gtatgtggtg ccaatcgact aagcgagatg
     1561 aaggtctgtt taccacaagg agatttgaat ccatgcctgc caaagcctgc ccatagtttt
     1621 ctctgctcga catccacgca accgggttcc ttccgagttg gcgcggctgt gactgccatc
     1681 gcagccgcgc tcccctctta ggttagatat gaaagtacca ccgacacagt cggtgggatt
     1741 ctgtgttcct g
//
LOCUS       DASWTX010001260         4975 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_15252, whole genome shotgun sequence.
ACCESSION   DASWTX010001260 DASWTX010000000
VERSION     DASWTX010001260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4975)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4975)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4975
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15252"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..814)
                     /locus_tag="VGD38_19155"
     CDS             complement(<1..814)
                     /locus_tag="VGD38_19155"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY0730211.1"
                     /translation="MAWVNSSDKSLSWKTAHLLREDAVTAILLAVFLALVATFSIREH
                     DPPTAAGVAVAPETFSAGRAVRHLSVIAEKPHPMGTEAHRAVRDYLVKQLSEAGLEPQ
                     VQAATTVTDKGPPLEVGAVANVVARLKGTSAGKAVLLVAHYDSVLTSFGASDDGMAVA
                     SLLETLRALKTGAPLKNDVIILFTEGEENGLLGARAFVDEHPWAKDVGVVLNFDARGN
                     SGPVIMFETSENNGWLIEQLAEASPYPTAHSLSYEIYRLLPNDTDMTVFRRAG"
     gene            complement(826..1602)
                     /locus_tag="VGD38_19160"
     CDS             complement(826..1602)
                     /locus_tag="VGD38_19160"
                     /inference="COORDINATES: protein motif:HMM:NF013166.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY0730212.1"
                     /translation="MVTVSPGRSTSPWFACAKPDPSARLRLFCFPYAGGGASIYRGWE
                     NYLPPGVEILAVQPPGRGSRFREPPLDRMDSLVGAVANAMEPYLDRPIVLFGHSVGAF
                     ASFEMAYRLGDTFGIHVSHLFVSGARGPQLPRNRKNIHDLSEEDFINELKTLNGTPHE
                     VLENPELMRMVSRTLRADFALVETYRAAHKPPLNCPITVLGGLEDDLVSREDLEAWKA
                     HTTNSFDLWQLPGDHFFIHTSDSLILRILSRELSRLTKRE"
     gene            complement(1661..2257)
                     /locus_tag="VGD38_19165"
     CDS             complement(1661..2257)
                     /locus_tag="VGD38_19165"
                     /inference="COORDINATES: protein motif:HMM:NF015578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbtH family NRPS accessory protein"
                     /protein_id="HEY0730213.1"
                     /translation="MSLQNTEDEDKTIYKVVVNHEEQYSIWPEYKANPLGWNDVGKVG
                     PKAECLAYIKEVWTDMRPLSLRKKMEEMARNPPPPAPVDNTPKGPSLVDRLSEGDHKI
                     VVSQRPEPTVKALKEAIDNGYVRVKFTETKGGTELGFKVDAGASDLSGANFDEGTGKV
                     RVVGGLTLDYVKVRCIAEIDLKTLEGVGHLEKVSEAGA"
     gene            complement(2282..3928)
                     /locus_tag="VGD38_19170"
     CDS             complement(2282..3928)
                     /locus_tag="VGD38_19170"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY0730214.1"
                     /translation="MNQSTFTKKSDLECLVLGHYDLGFDFHENLQRSRGLNSGEYRNL
                     RMDFITLDGKKLPYLNVLNELTGQRLHWTEMTQVAPVYLASFLSSHGINAEFSSFFHT
                     QRDELNELFSRRPKVIAITTTLYLTPLVAKEVVKFVREKSPDSFIVVGGPLIDNLAYH
                     LDEADFRIILEDIGGDVYVQQKQGEQTLVNLLLKLRESSDLSKVKNCYIKWNNQFVFT
                     GAEAEFSLAPINWANFHTKNLGHTLQTRTALSCPFRCTFCDYPVRAGKWVPQEIAQVE
                     NELRQIQERSNVANLVFIDDTFNVPADRFKEILRMMIRNQFTFRWYSYLRCNIMDEEL
                     CDLMARSNCGGVFLGIESGDPDVLKIMKKVATPDQYLRGMKFLNASGIMTFASLIVGF
                     PGETSQTVDNTIQLLQDAGPTFFRGEIWYNNPRAPIYSKSKDVHGINGFGYKWRHNTM
                     DWEQGCEEVLKLFRSVSSSTWLPMYDFDFWILPYLEGKGMSMDQIKRFVTSCDDLLSN
                     EIGEPRGGKLVTDRQQAENNLRQVCSEIQQNSFAVAAAAS"
     gene            complement(3987..>4975)
                     /locus_tag="VGD38_19175"
     CDS             complement(3987..>4975)
                     /locus_tag="VGD38_19175"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY0730215.1"
                     /translation="DPIRRIVMPDVQEMEEFGEMDASDEHSYTRVKGLEHKYCDTALL
                     LVNKVCGAYCRFCFRKRLFTDGNDEVTNDITDAVEYIQQHPEINNVLLSGGDPLIMST
                     GKLSKIVKQLRDIPHVRIIRIGTKMTAFDPYRILNDPSLLEMLSEYSLPDRKIFVMAH
                     FNHPRELTEPALKGLQLLQKAGAITVNQSPLIAGVNDKAEIIAELFGRLSFNGVVPYY
                     LFLCRPTSGNEPYMVPVEKGLEIFEEARRRLAGLAKNARLCMSHRTGKVEVLGKMNNK
                     IVFRYHRAPNPLDCGRVMVFDSNPTAGWLDDYITPETVTNLELHPHVQTVTA"
BASE COUNT         1043 a         1421 c         1352 g         1159 t
ORIGIN      
        1 gtccggcacg tctgaatacc gtcatgtcgg tatcgttcgg cagcagccgg taaatctcgt
       61 acgagagcga atgggccgtc gggtacggag acgcttccgc gagctgttcg atcaaccagc
      121 cattgttctc ggaagtttcg aacatgatca ccggaccgct attgccacgc gcgtcgaagt
      181 tgagcacgac gccgacgtct ttggcccacg gatgttcgtc gacaaacgcg cgcgcgccaa
      241 gaagtccatt ctcttcaccc tcggtgaaga gaatgattac gtcgttcttt agcggcgctc
      301 cggttttgag tgcccttaaa gtttcgagca gagacgcgac ggccataccg tcgtcactcg
      361 cgccaaagct ggtgagcacc gaatcgtaat gcgcgaccag caacaccgct ttgcccgcac
      421 tcgtaccttt caaacgcgcg accacgtttg cgaccgcacc tacttctaac ggcggacctt
      481 tatcggtgac agtcgttgcc gcctggacct gcggctcgag acccgcttcg gacaactgct
      541 tcacgagata atcccggacc gcgcggtgcg cctcagtgcc catcggatgc ggcttttccg
      601 caatcacaga taaatgtcgt acggcgcggc cggcagagaa tgtctctggc gcgacagcga
      661 cgccggcagc ggttggcgga tcgtgttcgc gaatgctgaa cgtcgccacc agcgcgagga
      721 agacagccag cagaatcgcc gttacggcgt cctcgcggag taaatgagca gtcttccagc
      781 taagcgattt gtctgacgaa ttaacccaag ccacgatggt tacctctact cgcgtttggt
      841 taacctgctg agctcacgcg agagaattcg caggatcaac gaatctgagg tgtgaatgaa
      901 aaagtggtcc cccggcagtt gccaaaggtc aaacgagttg gtggtgtggg ctttccatgc
      961 ttcgagatct tcgcgcgaga ccagatcatc ttcgagccca cctaaaacag tgatcgggca
     1021 gtttagtgga ggcttgtgcg cggctcgata cgtctcgacg agagcgaagt ccgcacgcag
     1081 agtcctgctg accatgcgca tcagttccgg gttttccaac acctcgtgcg gcgtgccgtt
     1141 gagtgttttc aactcgttga tgaagtcctc ttcggagaga tcgtgaatgt tctttctgtt
     1201 tctcggaagc tgtggaccac gagcgccgga cacgaagaga tggctgacgt gaataccgaa
     1261 cgtgtcaccc agccggtagg ccatttcgaa acttgcaaac gcacccacgc tgtgaccgaa
     1321 gagcacgatc ggacgatcga gatagggttc catcgcgttt gcgacagcgc ccactaacga
     1381 atccatccgg tctaaaggcg gttctctgaa acggctgccc cggcccggcg gttgcactgc
     1441 gagtatctcg acacccggtg gcaagtagtt ttcccaacca cgatagatcg acgctccacc
     1501 accggcatac gggaaacaga acagacgcag ccttgcgctc gggtcaggtt tcgcgcaagc
     1561 aaaccacgga gacgtactcc gtccgggaga cacagtcacc attagaacac tcctgaatag
     1621 gtcctattgg tcctatagga cctataccac ataggaccta ttacgcgccg gcttctgaga
     1681 ctttctcgag gtggcccacg ccttcgaggg tcttcagatc gatttcggcg atgcagcgca
     1741 ccttgacgta gtcgagggtt agaccaccga cgacgcgcac tttgccggtt ccttcgtcga
     1801 agtttgcgcc gctgagatca gaagcgccgg cgtcgacttt gaatccgagc tccgtgccgc
     1861 ctttggtctc ggtgaacttc acgcgcacgt aaccgttgtc aatcgcttct ttcaaagctt
     1921 tgactgtcgg ttcaggacgc tggctcacga cgatcttgtg gtcgccttca gacaatcgat
     1981 ccacaagact cgggcctttc ggcgtgttgt cgactggagc cggcggcggc gggttgcgcg
     2041 ccatctcttc catcttcttg cgaagactga gcggacgcat gtcggtccag acctctttga
     2101 tgtaggccag gcactcggct ttcgggccga ctttaccgac gtcattccag cccaacgggt
     2161 tcgccttgta ctcgggccag atcgaatact gttcttcgtg gttcacgacc actttgtaga
     2221 ttgttttgtc ttcgtcttca gtgttttgta aggacatttg tttctcctct ttcacttaaa
     2281 tttacgaggc agcagcggcg actgcaaaac tgttttgctg aatctcactg cacacttgcc
     2341 gcagattgtt ctccgcctgt tgccgatcgg tgaccagttt gcctcctcgc ggctcgccga
     2401 tctcgttcga cagcagatcg tcgcaggagg tcacgaatct cttgatctgg tccatgctca
     2461 ttcccttgcc ttcaaggtac ggcaggatcc agaagtcaaa gtcgtacatc ggcagccacg
     2521 tcgaactgga cacgctgcgg aagagcttca acacttcttc gcagccctgt tcccaatcca
     2581 tcgtgttgtg gcgccacttg taaccaaaac cattgatgcc gtgcacgtct ttactcttcg
     2641 agtagatcgg cgcgcgcggg ttgttgtacc agatctcgcc gcggaagaac gtcggcccgg
     2701 cgtcctgcag aagctgaatc gtgttgtcca cggtctgtga agtctcaccc ggaaaaccga
     2761 cgatcagcga agcaaacgtc atgattccac tcgcgttcaa aaacttcatg ccgcgaagat
     2821 actgatccgg cgtcgcgacc ttcttcatga tcttcaacac gtccgggtcg cccgattcga
     2881 tacccagaaa cacgccgccg caattgctgc gcgccatcaa gtcgcacaac tcctcgtcca
     2941 tgatgttgca gcgcaagtac gagtaccagc ggaacgtaaa ctggttgcga atcatcatcc
     3001 gcaggatctc tttgaaacga tccgccggca cgttgaacgt gtcgtcgata aagacgaggt
     3061 tggcgacgtt cgaacgttcc tgaatctggc gcagttcgtt ttcaacctgc gcgatctcct
     3121 gcggcaccca cttaccggcg cgtaccggat agtcgcaaaa agtgcagcgg aacggacaac
     3181 tcagcgccgt acgcgtttgc agcgtgtggc cgagattctt cgtgtggaag ttggcccagt
     3241 tgatcggcgc gagtgaaaac tccgcttccg cgccagtgaa aacaaactgg ttgttccact
     3301 tgatgtagca gtttttcact ttgctcagat cgctgctctc gcgcaacttc agcaacaggt
     3361 tcacgagcgt ctgttcgccc tgtttctgct gaacgtaaac gtcgccaccg atgtcttcga
     3421 gaatgatacg gaaatccgct tcgtcgaggt gatacgccag gttatcgatg agtgggccac
     3481 cgacgacgat gaacgaatcc gggctcttct cgcgaacaaa cttcacaact tccttagcga
     3541 cgagcggcgt caggtagagc gtcgtcgtga ttgcaatcac tttcggtcgc cggctgaaca
     3601 gttcgttcaa ctcatcgcgt tgggtgtgga agaagctcga gaactccgcg ttgattccgt
     3661 gactcgaaag aaagctggcc aggtaaacag gcgcaacctg cgtcatctcg gtccagtgca
     3721 gccgttgacc ggtgagttca ttgagcacgt tcaggtacgg cagcttcttg ccgtcgagcg
     3781 tgatgaaatc cattcggagg ttgcgatact cacccgagtt gaggcccctc gatcgctgca
     3841 ggttctcgtg gaaatcaaat cctaaatcgt aatgcccgag gaccagacat tcgaggtcag
     3901 atttcttggt aaatgtagac tgattcatta ctactccttt tgcgcagccc tcttcgttca
     3961 ggtttgctgc accttctctt gttcgttcac gcggtaacgg tttggacgtg cggatgtaat
     4021 tcgagatttg taaccgtttc tggggttatg tagtcgtcga gccaacccgc ggttggattg
     4081 ctgtcgaaga ccattacgcg tccgcaatcg agtggattcg gggcacggtg atagcgaaag
     4141 acgatcttgt tattcatctt gccgagcacc tcgacttttc cggtgcgatg tgacatgcag
     4201 agcctggcgt tcttggccag tccggccaga cggcgacgtg cttcttcaaa tatctccagc
     4261 cccttttcta ccggcaccat gtacggctca ttcccggaag tcgggcggca aaggaacagg
     4321 taataaggca cgacgccgtt gaacgacagc ctgccgaaca gctcggcgat gatttccgct
     4381 ttgtcgttca caccggcgat cagcggcgac tgattgaccg tgatcgcgcc ggccttttgt
     4441 aacaactgca atcccttgag agccggttcg gtgagctcgc gcggatgatt gaagtgggcc
     4501 atcacgaaga tcttgcgatc cggcagactg tattcactca acatctcgag cagtgacgga
     4561 tcgttgagga tgcggtacgg gtcgaaggcc gtcatcttcg tgccgatgcg aatgatgcgc
     4621 acgtgcggga tgtcgcgcag ttgcttgacg atcttgctca acttgccggt cgacatgatc
     4681 aaggggtcgc cgcccgacaa cagcacgttg ttgatttccg gatgctgctg gatgtactcg
     4741 accgcgtcgg tgatgtcgtt cgttacttcg tcattgccgt cggtgaagag tcgcttgcga
     4801 aaacagaaac gacagtaagc accacagacc ttattaacga gcagcagcgc ggtgtcgcag
     4861 tacttatgtt cgagaccttt aacccgtgta taagagtgct cgtccgaagc atccatctca
     4921 ccaaactctt ccatctcctg aacatcgggc atcacaattc gcctgatcgg atcct
//
LOCUS       DASWTX010001261         5641 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_210412, whole genome shotgun sequence.
ACCESSION   DASWTX010001261 DASWTX010000000
VERSION     DASWTX010001261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5641
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210412"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..495)
                     /locus_tag="VGD38_19180"
     CDS             complement(<1..495)
                     /locus_tag="VGD38_19180"
                     /inference="COORDINATES: protein motif:HMM:NF014851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730216.1"
                     /translation="MAEETAIPRPEYPRPQFVREEWLNLNGEWEFAFDDADEGLQLDW
                     YDGRKLPDRIIVPFCYQAELSGINDKSIHECVWYARDFEVPAEWRGRDILLNFGAVDY
                     SSTVWVNGQEVGHNQGGHVPFQFDIAPYLKSGVNRLTLRVEDKQDPEQPRGKQSVTGI
                     PQEID"
     gene            complement(523..2742)
                     /locus_tag="VGD38_19185"
     CDS             complement(523..2742)
                     /locus_tag="VGD38_19185"
                     /inference="COORDINATES: protein motif:HMM:NF012457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HEY0730217.1"
                     /translation="MSDSAVHAEAAPALWAGVEATVNRVGNRYSDQLERSGHALRISD
                     LDRLASLGIKCVRYPVLWERTAPRSLDEFDWRWADERLNHLRRLEIKPIVGLLHHGSG
                     PPYTNLLDPEFPEKLAQYAGAVARRFPWVEDYTPVNEPLTTARFSCLYGLWYPHKRDP
                     LSFGKALLAQCRATVLAMREIRKVNPNARLVQTEDLGRTYSTRPLAYQAEFENERRWL
                     TFDLLNGQLNRRKLMWRYFRQHARMEVDELKWFLDNPLPPDILGLNHYVTSQRFLDHR
                     LARYPVSCHGGNGRQTYADVEAVRACRAGMLEPKALIEEVWDRYKQPLAITEAHLACT
                     REEQLRWFKEIWDAAHSLKDEGVDIRAVTAWAAFGSFDWNSLLTREDGFYESGVFDLR
                     STMPRPTALAKMLTTLANGNDYNHPVLDSSGWWRRFDRFSHEDTHEIIASVRHTSSTG
                     DLGRALLITGATGTLGKAFARMCEQRGLSYYLASRQQLDIAEPDSVKAAVERFEPWAI
                     INAAGYVRVDDAENEVDRCMRENVAGPTNLASICADREIPLVTFSSDLIFDGQKNDAY
                     VERDPGSPLNVYGLSKLRAETEVLKHYSEALIIRTSAFFGPWDEFNFVHAVLRSLETG
                     KHFVAADDVTISPTYVPHLVNAALDLLIDGEHGVWHLANEGAATWADFAALVAEMGGS
                     NRTFVRGRPNASLSLTARRPHFSALSRERGTLMPSLERGLENYFHERKQARLRHCAF"
     gene            complement(2757..3971)
                     /gene="glf"
                     /locus_tag="VGD38_19190"
     CDS             complement(2757..3971)
                     /gene="glf"
                     /locus_tag="VGD38_19190"
                     /EC_number="5.4.99.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008767 - UDP-galactopyranose mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009273 - peptidoglycan-based cell wall
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactopyranose mutase"
                     /protein_id="HEY0730218.1"
                     /translation="MFDYLIVGAGFAGSVLAERLARGSNKKVLLCDKRPHIGGNAYDH
                     YNEDGILVHKYGPHIFHTNSREVFEYLSRFTEWRSYQHRVRACVDGQIVPIPINLDTI
                     NTLYGLSLTSFEVEEFFKKVAEPKERIKTSEDVVVSQVGRELYEKFFRNYTRKQWGLD
                     PSELDSSVTSRIPTRTNRDDRYFTDTYQAMPLHGYTRMFENMLDHPNIKVLLNCDYRE
                     VEKDIPFREMIYTGPVDAFFDYRYGKLPYRSLEFKHETHNVQVYQQAPVINFPNEHLY
                     TRVTEFKYLTGQEHSKTSIVYEFPQSEGDPYYPVPRKENAAIYAQYKELADATTGVHF
                     VGRLATYKYYNMDQIVAQALTVYSKMNSVKRKEALVMVSGIARAGNGNGKARQLPSLP
                     SQPPQRQPLTQT"
     gene            complement(4005..5198)
                     /locus_tag="VGD38_19195"
     CDS             complement(4005..5198)
                     /locus_tag="VGD38_19195"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HEY0730219.1"
                     /translation="MDNYTLNAGQNKPDLICFSHLRWDFVYQRPQHLLKRCARERRVF
                     FVEEPIFDNGSMRLEVHEREKNLKVVVPYLPEGLCSEVAKLAVLHDMVQRLIVENNIN
                     QYLVWYYTPMALDFTRHLRPLAVVYDCMDELSAFKGAPECLKLRERELFKTADLVFTG
                     GQSLYEAKRDQHHSVYAFPSSIDRDHFMQARKPLEEPEDQRHIPHPRMGFFGVVDERF
                     DVELLDQLSQNRPDWQFVIVGPVVKIDPETLPKRENIHYLGSKSYQDLPAYVAGWDVA
                     LLLFAQNDSTRFISPTKTPEYLAAGKPVVSTPIRDVVYPYGQMGLVRIAGDAREFTAA
                     IEDLLKSETDRKRWLETVDGFLATMSWDETWARMSRLIDEAVANKTRTALIARAGQAQ
                     RGVAA"
BASE COUNT         1212 a         1620 c         1533 g         1276 t
ORIGIN      
        1 gtcgatctcc tgcggaatac cggtgaccga ctgttttccg cgtggctgct ccgggtcctg
       61 tttatcttcg acgcgcagcg ttagacgatt gacgccgctt ttgaggtaag gcgcgatgtc
      121 gaattggaaa ggaacgtggc cgccctggtt gtgtccgact tcctgaccgt tgacccacac
      181 agtggacgaa taatccaccg cgccgaagtt caacagtatg tcgcggccac gccactccgc
      241 aggcacttcg aaatcgcgcg cgtaccaaac gcactcgtga atcgacttgt cgttgatgcc
      301 cgacagttcg gcctgataac aaaacggcac gatgatgcga tcgggcaatt tgcggccgtc
      361 gtaccaatca agctgcaagc cttcgtccgc atcgtcaaag gcgaactccc actcgccgtt
      421 gagattgagc cattcttcgc gaacaaattg gggacgggga tactctggac ggggaatcgc
      481 tgtttcttcg gccatcagga ttacaagatt aacaagagat tctcaaaaag cgcagtgtcg
      541 taatcgagct tgttttcgtt cgtgaaaata gttctccaga cctcgttcca acgaaggcat
      601 cagcgtgcct cgctcacgcg aaagggcgct gaagtgcgga cggcgcgccg tcagactcag
      661 cgatgcattc ggacggccgc gcacgaacgt gcgattgctg ccgcccatct ccgcgaccaa
      721 tgccgcgaag tcagcccacg tcgccgcgcc ctcgttcgcg agatgccaga cgccatgctc
      781 gccgtcgatc agaagatcga gcgcggcgtt gaccagatga ggtacgtacg tcggcgagat
      841 cgtaacgtcg tcggcggcaa caaagtgctt gccggtctcg agcgatcgca ggactgcatg
      901 aacgaagttg aattcgtccc atggtccaaa gaatgcgctc gtccgaataa tcagcgcttc
      961 ggaataatgt ttgagcactt ccgtttccgc gcgcagctta ctcaagccgt aaacattcaa
     1021 cggcgaaccg ggatcgcgtt cgacgtacgc atcgttcttc tgcccgtcga agatcaaatc
     1081 ggaagagaag gtgactaacg gaatctcgcg atccgcgcag atcgaagcaa gattcgttgg
     1141 cccggcaacg ttctcgcgca tacagcgatc cacttcattt tccgcgtcgt ccacgcgaac
     1201 gtagccggcg gcgttgatga tggcccaggg ctcgaaacgt tcgaccgcgg ctttgacgga
     1261 gtccggctcc gcaatgtcga gttgttgcct gctcgcgagg taataagaca gtccgcgttg
     1321 ctcgcacatc cgcgcgaaag ctttaccgag tgttccggtt gcaccagtga tcagcagagc
     1381 gcggcccaga tcgccggtcg agctcgtatg acgcacgctc gcgatgatct cgtgtgtgtc
     1441 ttcatgcgag aaacgatcga aacggcgcca ccaacccgag ctgtccaata ccggatggtt
     1501 gtagtcgttg ccgttcgcga gcgttgtcaa cattttcgcc agcgctgtcg gccgtggcat
     1561 cgtgctgcga agatcgaaga cacccgattc gtaaaagccg tcctctcgcg tcaacagact
     1621 gttccagtca aacgagccaa acgcggccca cgctgtgaca gcacgaatgt ccacgccctc
     1681 atctttcagc gaatgcgcgg catcccaaat ctctttgaac cagcggagtt gctcttcacg
     1741 cgtgcacgca agatgcgcct cggtgatcgc gagcggctgc ttgtaacgat cccagacttc
     1801 ttcgatcaac gctttcggct cgagcattcc cgcacgacac gcgcgcacgg cttcgacgtc
     1861 ggcgtaagtt tgccgcccgt tgccgccgtg acatgaaacc gggtaacgcg cgagacgatg
     1921 gtccagaaag cgctggctgg tgacgtagtg attcaatccg aggatgtcgg gtggcagcgg
     1981 attgtcgaga aaccacttca gctcgtctac ttccatgcgc gcgtgctgcc tgaagtaacg
     2041 ccacatgagc ttgcgtcgat tcaactgccc gttcagcaga tcaaacgtga gccagcggcg
     2101 ttcgttctca aactccgcct ggtaagccag cggccgcgtg ctgtacgtcc tgccgagatc
     2161 ttcggtttga accagacgcg cgttcggatt cactttgcgg atctcgcgca tcgcgagcac
     2221 tgtcgcacgg cactgcgcca ggagcgcttt gccaaatgac agcggatcgc gtttgtgtgg
     2281 ataccagaga ccgtagagac aactgaaacg cgcggtcgtc agcggttcgt ttacgggcgt
     2341 gtagtcttcg acccacggaa aacgccgcgc gactgcgccc gcatactgcg cgagtttttc
     2401 cggaaactca ggatcgagca ggttcgtgta aggtggacca ctgccgtgat gcagcaggcc
     2461 gacgatgggt ttgatttcta aacggcggag atggttgagc cgctcgtcgg cccaacgcca
     2521 atcgaactca tcgagactgc gaggcgcagt gcgctcccac aacacgggat agcgaacaca
     2581 cttgatcccg agcgaggcga ggcgatcgag atcgctgatg cgtaacgcat gcccgctccg
     2641 ttcaagttga tcggaatacc tgtttcctac ccgattgact gtcgcttcca cgccggccca
     2701 cagagccggc gctgcttcag catgcaccgc cgaatcactc atctcttcaa ttcgtctcag
     2761 gtctgggtca acggttgccg ctgtggcggc tgactcggta gcgacggaag ctgccgggct
     2821 ttgccgttcc cgtttcccgc gcgtgcgatt ccgctgacca taaccagcgc ctctttgcgc
     2881 ttcacgctgt tcatcttcga ataaacagtc agcgcctgag cgacgatctg gtccatgttg
     2941 taatacttgt acgtggccag ccgcccgaca aagtgcacac ctgttgttgc atcggcgagc
     3001 tctttgtact gcgcatagat cgccgcgttc tctttcctgg gcaccggata ataaggatca
     3061 ccttcgctct gcggaaactc gtaaacaatg ctcgtcttcg agtgttcctg accggtcaaa
     3121 tacttgaact ccgtcacgcg cgtgtacaag tgctcgttcg gaaaattgat caccggcgct
     3181 tgctggtaaa cctgaacgtt gtgcgtctcg tgtttgaact cgagcgaacg atacggcaac
     3241 tttccgtaac gataatcgaa gaacgcatcc actggacccg tgtaaatcat ctcccgaaac
     3301 ggaatatctt tttccacttc acgataatca caattcaata agaccttgat attcgggtgg
     3361 tccagcatgt tctcaaacat gcgcgtgtag ccgtgcaacg gcatggcctg gtacgtgtcc
     3421 gtaaagtaac gatcgtcgcg attggtgcgc gtcggaatac gcgaagtcac actcgaatcg
     3481 agctcggacg gatcgagtcc ccactgtttg cgcgtgtagt ttcgaaaaaa cttttcgtac
     3541 aactcgcgtc cgacctggct gaccacgacg tcttccgacg tcttgatccg ctctttcggc
     3601 tcggcgactt tcttgaaaaa ctcttccact tcaaacgaag tcaaactcaa gccgtaaagc
     3661 gtattgatcg tatccagatt gatcggaata ggaacaattt gtccgtcgac gcacgctcgc
     3721 actcgatgtt gatacgagcg ccattcagtg aaccgcgaga ggtattcaaa aacctcgcgc
     3781 gagttggtgt gaaagatgtg cggtccatac ttgtgaacga gaatgccgtc ttcgttgtaa
     3841 tggtcgtaag cgttgccgcc gatgtgcgga cgcttatcgc aaagcagcac cttcttgttc
     3901 gaaccccttg ccaaccgttc cgcgagtacg ctgcccgcga acccggcccc tacaatcaga
     3961 tagtcaaaca cgatcaaata cccccttgtt tccgagattt gttcttaagc agcaacaccg
     4021 cgttgcgcct gtcccgctcg cgcgatcagc gccgtgcgtg ttttgtttgc cactgcctca
     4081 tcaatcagcc gcgacatgcg tgcccacgtt tcatcccacg acatcgtcgc gaggaatccg
     4141 tcgactgttt ccaaccaccg tttgcgatcg gtttctgact tcagcagatc ttcgatcgcc
     4201 gcggtgaatt cccgcgcatc gccggcaatg cgaactaatc ccatttgacc gtacgggtaa
     4261 acaacatccc gaatcggtgt tgaaacaacg ggctttcctg ccgccaggta ttctggtgtt
     4321 ttagtcgggc tgataaaccg agttgagtcg ttctgagcaa acaacagtag cgccacgtcc
     4381 caaccggcga cgtacgccgg caggtcctgg taactcttgc tgccgaggta atgaatgttt
     4441 tcgcgcttgg gcagagtctc cggatcgatc tttacgaccg gaccgacgat gacgaactgc
     4501 cagtcagggc ggttctgcga gagttgatcc agtagttcaa cgtcgaaccg ctcgtcgacg
     4561 acgccgaaga agcccatccg cggatgcgga atgtgccgtt gatcttccgg ttcttcgagt
     4621 ggctttcgcg cctgcatgaa atgatcgcga tcgatactgc tcgggaacgc atacaccgag
     4681 tgatgctggt cgcgtttcgc ttcgtagaga ctttggccgc cggtgaaaac gagatccgct
     4741 gtcttgaaca gttcgcgttc gcgaagtttc agacattccg gcgcgccttt gaacgccgag
     4801 agctcgtcca tgcagtcgta aacaactgcg agtggacgca ggtgacgcgt gaaatccagc
     4861 gccatgggcg tgtaatacca aaccaaatac tggttaatgt tgttttccac gatcagccgt
     4921 tgcaccatgt catggagcac ggcgagcttc gccacttcac tgcacagacc ctctggtaaa
     4981 tatggaacaa caactttgag gtttttttcg cgttcgtgta cttccaaccg catcgagccg
     5041 ttgtcgaaaa tcggttcttc tacaaagaag acacgtcgtt cgcgtgcgca gcgtttaagc
     5101 aggtgttgcg gacgttgata aacgaagtcc caacgcagat gggagaagca gatcagatcg
     5161 ggtttgttct ggccggcgtt tagagtgtag ttatccacgt gcacaaagat cctcctgcaa
     5221 agcagagttg atgattgatt gactgagtaa atctaaattg cgattcggcg ggacgcgttt
     5281 ctgcgactta gacgacgcac atgatcttcc ttaaagatgt cataagtgtc gccagatcgt
     5341 cattttagat ttatctaacg cccgcgcttt gtttccatac aacgaccaac gcgcgttcgt
     5401 gttttttccg tccgaaacaa tcagcaggta tggtcgcact cactgctgag caattagagt
     5461 gcctgaggtt ctacttggat cacgcggtcg gcggagcaat ctgtaagagg gcgtcgagct
     5521 gatcgcccgg aagggtctcg gcgggttcga ggccgcggcg gaagattcgt gcgccggaag
     5581 tgcctttcaa catcgttacc ccgtcttcga tacgaagcat cgcgccttca cgcagtgcgg
     5641 c
//
LOCUS       DASWTX010001262         1646 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_303130, whole genome shotgun sequence.
ACCESSION   DASWTX010001262 DASWTX010000000
VERSION     DASWTX010001262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1646)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1646)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1646
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303130"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1646)
                     /locus_tag="VGD38_19200"
     CDS             complement(<1..>1646)
                     /locus_tag="VGD38_19200"
                     /inference="COORDINATES: protein motif:HMM:NF021596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HEY0730220.1"
                     /translation="SPTNIGLLLLSTSSAHKLGYVSTLELVERQELTFFTLSKLGRMH
                     GHFFNWYDTKTLEPLMPQYISTVDSGNLAGHLIAIKQCSVELPDEKLFGPHVIRGLPD
                     TIDALSNEATNLGSVRQRTEVVTVRELRDEIGACRELLNHYPGHDLAAWCALINALGR
                     RTSEIDDIVNALAHEHGEINFKELRWWVSALKHQVTCLRRDTESLTTWGRLLPELKQA
                     IGASQEWAAITKLLQEVPTLAEVPQICDKALVQLSAFQDHDSTQLAQVSTRLTKALEQ
                     AAGGSNDLLSRLSRIARTCDQIIDEMDFSFLFDVERKLFTIGFNVTASRADDSYYDLL
                     ATEARLASFVGIAKGDVPQQHWFRMGRALTKVDGGRALLSWTGTMFEYLMPLLVMRNY
                     PATLLAETYKTIVERQIEYGQERGVPWGISEAAYNVRDLQLNYQYGPFGVPGLGLKRG
                     LVEDLVVAPYATMLAASIDAHAALSNLRRLEKEGALGSLGFYESIDYTAERLPQGQKS
                     VLIRAFMAHHQGLSLVALTNLLYDDVMERRFHSDPAVQAT"
BASE COUNT          314 a          462 c          516 g          354 t
ORIGIN      
        1 tcggttgcct gcacggcggg atcgctgtgg aagcgtcgct ccatcacgtc gtcgtacagc
       61 agatttgtca gcgcgacgag actcaagccc tggtgatggg ccatgaacgc gcgaatcaga
      121 actgactttt gtccctgcgg caagcgctct gccgtgtagt cgatcgactc atagaagccc
      181 agcgaaccga gtgcgccttc tttttcgagc cggcgcagat tgctgagtgc ggcgtgtgcg
      241 tcgatggacg ctgcgagcat cgttgcgtaa ggcgcgacga cgagatcttc gacgagtccg
      301 cgtttcaagc cgagaccggg aacgccgaac ggtccatatt gatagttgag ctggagatcg
      361 cgcacgttgt aggccgcttc tgaaattccc cacggcacac cgcgctcctg tccgtactcg
      421 atctgtcgct cgacaattgt tttgtaagtt tctgcgagca gcgtcgccgg gtagttgcgc
      481 atcacgagca gcggcatcag gtattcgaac atcgtgccgg tccacgagag cagcgcgcgt
      541 ccgccgtcga ccttggtgag cgcgcggccc atgcgaaacc agtgttgctg cggcacgtcg
      601 cctttggcga tgccgacaaa actcgcgagc cgtgcttcgg tggcgagcag atcgtaatac
      661 gaatcgtccg cgcgcgaggc ggtgacgttg aagccgatcg tgaacagctt tcgttcgacg
      721 tcgaagagga acgagaagtc catctcgtcg atgatctggt cgcacgttcg cgcgatgcgg
      781 ctgagacgcg acaacaagtc gttcgaaccg ccggcagctt gttcgagcgc tttcgttaac
      841 ctcgttgaga cctgtgcgag ctgtgttgag tcgtgatcct ggaaagccga gagttggacc
      901 agggctttgt cgcagatttg cggaacttcc gcgagcgtcg gcacttcctg cagcagtttg
      961 gtgatcgcgg cccactcttg gctggcgccg atcgcctgtt tcagttcagg cagtaaacgg
     1021 ccccacgttg tcagtgattc ggtatcacgc cggagacacg tcacctgatg tttgagtgcg
     1081 ctgacccacc agcgcaactc tttgaaattg atctcgccat gttcgtgcgc gagcgcgttg
     1141 acgatgtcgt cgatctccga agtgcgccgt cccagcgcat tgatgagcgc acaccacgcg
     1201 gcgagatcgt ggccgggata gtgattcaac agctcacggc aggcgccaat ctcatcgcgc
     1261 aattcgcgga cggtgacgac ctccgtacgt tggcgaacac tgccgagatt cgtcgcctca
     1321 tttgagagcg cgtcgatggt gtctggaagt ccgcgaatca cgtgtgggcc aaacagcttc
     1381 tcgtcaggca gttcgaccga acactgtttg atcgcgatga ggtggcccgc gaggttgccg
     1441 ctgtcgacgg tcgaaatgta ctgcggcatg agcggctcga gagtcttcgt gtcgtaccag
     1501 ttgaagaagt gtccgtgcat gcggccgagc ttcgacaacg tgaagaaggt caattcctga
     1561 cgttcgacga gctcgagtgt gctgacatag ccgagtttgt gtgccgacga ggtcgagagc
     1621 agcaacagcc cgatgtttgt cggcga
//
LOCUS       DASWTX010001263         2444 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_303171, whole genome shotgun sequence.
ACCESSION   DASWTX010001263 DASWTX010000000
VERSION     DASWTX010001263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2444)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2444)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2444
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303171"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..816)
                     /locus_tag="VGD38_19205"
     CDS             complement(<1..816)
                     /locus_tag="VGD38_19205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730221.1"
                     /translation="MGTPAKILGIDPAYAIAGGEVIIDCVGFDTRDPQACDVFIGDVP
                     AQIVAIGPKRVLAIVPETKGGELDVRLESGGDLSDPAKLTVARKLAGDLHPVANPAFD
                     PDDGALFVTRSGSRGEELPVTLFRIDISGDVSEYSGDIPNPTGIAFGQDGQMFVSSRL
                     EGVVYKVTPFKEAVAFARNLGVATGIAFDRSGTMFVGDRTGTIYRVNGIGEERAWAQL
                     EPSVSAFHLAFGPDGSLYVTGPTVTSYDCVWRINADGETDVFFKGLGRPQGLAF"
     gene            1089..>2444
                     /gene="hflX"
                     /locus_tag="VGD38_19210"
     CDS             1089..>2444
                     /gene="hflX"
                     /locus_tag="VGD38_19210"
                     /inference="COORDINATES: protein motif:HMM:TIGR03156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEY0730222.1"
                     /translation="MQYVMVGDNRGIELPDFKRVRVASGRFRGLRCVHTHLRGEPLTQ
                     DDLTDLALLRLDLMAAINVDSETGLPGLVRAAHLLPLHSGDLESTSTPDLYSFLEPSM
                     ASQLDLDFLALIESLEEEMARNRQTARRAEMRDRTILVGVATGSVADAEESMAELAEL
                     AASAGVIVQDRIIQRRSEIDPRTVLGKGKLDELIIRALQLGADMLVFDRELSPAQVRS
                     LSEVTDLKVIDRSQLILDIFAQRAQSKEGKIQVELAQLKYLLPRLIAGQDSAFSRLAG
                     GIGGRGPGETKLETDRRRVRDRINRLEKEIETQRQRRQERRKGRTRQQLPVISIVGYT
                     NAGKSTLLNALTKSEVHAEQRMFATLDPTSRRLRLPREQEVIINDTVGFIRALPPDLL
                     SAFRATLEEISDSSLLIHAVDVSNPRWVQQVQSVKRILAELKFADIPTILALNKADLL
                     EP"
BASE COUNT          520 a          771 c          693 g          460 t
ORIGIN      
        1 aaaggcgagc ccctgcggac gccccaagcc tttgaagaaa acgtctgtct cgccgtcagc
       61 atttattcgc caaacacaat cgtaactcgt gaccgttgga ccagtgacat aaagcgagcc
      121 gtcaggacca aacgcgagat gaaacgcgga aacagacggt tcgagctgcg cccacgcgcg
      181 ttcttcgccg atgccgttga cgcgatagat cgtgccggtg cgatcgccga cgaacatcgt
      241 cccgctgcga tcgaacgcaa tgccggtcgc aaccccgaga ttccgcgcaa acgccaccgc
      301 ttccttgaac ggtgtcactt tgtagacgac gccttcgaga cggctgctga cgaacatctg
      361 cccatcctgt ccaaacgcga taccggttgg attgggaatg tcgcccgagt actcgctgac
      421 gtcgccgctg atatcgatac ggaagagcgt gaccggcagt tcctcgccgc gcgagcccga
      481 acgcgtcaca aataaagcgc cgtcgtcggg atcgaacgcc gggttcgcca cgggatgaag
      541 atcgccggcg agtttgcgtg cgactgtcag ctttgcggga tcgctgagat cgccgccact
      601 ctccagtctg acgtccagct cgccgccttt cgtttcggga acgatcgcca gtacgcgctt
      661 tggtccaatc gcgacaatct gcgccggcac gtcgccgatg aacacgtcac acgcctgcgg
      721 gtcgcgcgtg tcaaacccga cgcagtcgat gatcacctcg ccgcccgcaa tcgcgtaggc
      781 gggatctatg cccagtattt tcgccggagt acccataaaa gccgttcatc atacgatgcc
      841 gtcagatcgt tgtctaattg cagcctatgc tataattcgc gcccggaata ggaaggaaaa
      901 cggtcatcac tagtgttctc ggcaacacgc ttgggttaaa gccgaaccag atccggcgca
      961 tagaaaagct gtacagcagg cgcatacctc ctcgccagat cgtcactccc gaattcgctc
     1021 gccaggtcag cgagctgtct cacgaaaccc gtagacaaat cggcgcactg atcgatcgca
     1081 agggtcacgt gcagtacgtc atggtcggcg ataaccgcgg catcgagcta cctgacttca
     1141 aacgcgttcg cgtcgcttcg gggcgctttc gcggcctgcg ctgcgtccat acgcatctgc
     1201 gcggcgaacc gctgacacaa gacgacctga ccgacctcgc gctgttgcgg ctggatttga
     1261 tggccgcaat caacgtggat agcgaaaccg gcttgcccgg tctcgtccgc gccgctcacc
     1321 tgctgccgtt gcactcaggc gatctcgaga gcaccagtac gcccgacctc tattcgtttc
     1381 tggaaccaag catggcgtcg cagttggatc tcgacttcct cgcgctcatc gagtcgctgg
     1441 aagaagagat ggcgcgcaat cgccaaacag cccgccgcgc cgaaatgcgc gaccgcacga
     1501 ttctcgtcgg cgtcgcgacg ggatcggtcg ctgacgcgga agaatccatg gcagagctcg
     1561 ccgagcttgc ggcctcagcc ggagtgatcg ttcaggatcg aatcattcaa cgccgctccg
     1621 agatcgatcc gcgcaccgtg ctcggcaaag gcaagctcga cgaattgatc atccgcgcgt
     1681 tgcagctcgg cgccgacatg ctcgtcttcg atcgcgagct ttcaccggcg caagtccgct
     1741 cgctgtcgga agtgaccgat ctgaaagtta tcgatcgctc gcaactgata ctcgacatct
     1801 ttgcgcaacg cgcgcagtcg aaagagggca agattcaggt tgagctggcg cagttgaaat
     1861 acctgctgcc gcgactcatt gctggtcagg actcggcgtt ctcgcgtctc gcgggtggta
     1921 tcggcggccg cggtcctggt gaaacaaaac tcgaaaccga tcgccgccgc gttcgcgacc
     1981 gcatcaaccg tctcgaaaaa gagatcgaga ctcaacggca acggcggcag gaacggcgca
     2041 agggccgcac acgtcagcaa ctgccggtca tctcgatcgt cggttacacc aacgcaggca
     2101 agtcaacact gctcaatgcg ctgaccaaga gcgaggtgca cgccgaacag cgaatgtttg
     2161 ccacgctcga tccgacgtcg cggcggctgc gtctgccgcg cgagcaggaa gtgatcatca
     2221 acgacactgt cggttttatt cgcgcactgc cgcctgattt gctgtcggcg tttcgcgcga
     2281 cgctcgaaga gatcagcgac agcagtctgt tgattcacgc ggtcgacgtt tccaacccgc
     2341 gttgggtgca acaggtgcag tcagttaaga gaatcctcgc ggaactaaaa ttcgcagaca
     2401 ttcccacgat cctggcgttg aacaaagccg acttgctcga accc
//
LOCUS       DASWTX010001264         2503 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_236397, whole genome shotgun sequence.
ACCESSION   DASWTX010001264 DASWTX010000000
VERSION     DASWTX010001264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2503
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236397"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2503)
                     /locus_tag="VGD38_19215"
     CDS             complement(<1..>2503)
                     /locus_tag="VGD38_19215"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730223.1"
                     /translation="TPTPINWSTDPVLKRFVFRGIGPASMGGRIDDIAVAEQNPYIIY
                     LAFATNGVWKSTNNGTTFTPIFDTYGTHSIGDVTVAPSDPNIVWVGTGEPNNRQSSSF
                     GDGIYKSVDGGKTFTKMGLEDSQTIARIVIDPKDPNIVYAAVLGHLFGPNKERGVYKT
                     TDGGRTWTNVKFIDEDTGFTDIVMDASDSKTLYAASYQRRRTNYGFNGGGPGSGIWKT
                     IDAGKTWKKLEGGGLPEGLLGRIGLDVSRSNPNIIYAQMEVGPSTGTGGEDPVAGQTA
                     PSPSPSPSASPSPSPGASPSPAPPDPKKSGVWRSDDKGRTWRIVSNENNRPMYYSQIR
                     VDPRNPENVYVGGLNFSKSTDGGKTFRSLQAGIAHSDNHAIWINPANGDHLLVGNDGG
                     LNVSYDQGATWEFINTIPAAQFYAIGVDMRKPYYVYGGLQDNGSWGGPSMTRNQQAGI
                     TNADWYRVGGGDGFYTQIDPTDHNIVFVESQGGAVQRLDLRTGRSVSIRPRGVPRPGR
                     RGQGGGGAAAAASPSPGASPAASPTPDTQAQLAAFAAAQGFGGFGGGANLASNVVPTP
                     GPNETYRFYWSSPIHLSPHNPRVVYFGGNRLFRSMDRGDTWTATIDLSKQIDRNTLPI
                     MGVPGNQPMASKHDGYTGYGYVVSVAESPKVPGILWVGTDDGNIQVSKDGGATWTNVS
                     KNVPGIGDTYHISRVEPSRYDAATCYLAVDGHRLNDMKPYLFVTRDYGATWTSIVNNL
                     PKWGNVNVIREDPKNKDLLYVGTEFGLYISLNGGAEWKPFMSGMPVMRVDDVLVHPRD
                     NDLIVATHGRGIYILDDITPLQQLSQKVMASEAHL"
BASE COUNT          454 a          751 c          774 g          524 t
ORIGIN      
        1 aacagatgcg cttccgaggc catcaccttc tgcgacaact gctgcaacgg cgtgatgtcg
       61 tcgagaatgt aaatcccgcg cccgtgcgtc gcgacgatca gatcgttgtc acgcggatgg
      121 accaggacgt cgtccacgcg catcaccggc attcccgaca tgaacggctt ccactccgca
      181 ccgccgttca gcgagatgta caaaccaaac tccgtgccga catacagcag atccttgttc
      241 ttcggatctt cgcgaatgac gttgacgtta ccccacttcg gcaggttgtt gacgatcgac
      301 gtccacgtcg cgccgtagtc acgcgtgacg aaaagatatg gcttcatatc gttcaaacga
      361 tgaccgtcga cggcgagata gcaggtagcc gcgtcgtagc gcgacggttc gacgcgcgag
      421 atgtgatacg tgtcgccgat accgggaacg ttcttcgaca cgttggtcca ggtggcgccg
      481 ccgtctttgc tgacttgaat gttgccgtcg tcagttccga cccaaagaat gccgggcacc
      541 ttcggcgact ccgcgacact cacgacgtaa ccgtaaccgg tgtagccgtc gtgcttcgaa
      601 gccatcggct gattgccggg cacgcccatg atcggcaacg tgttgcgatc gatctgtttg
      661 ctgagatcga tcgtcgcggt ccacgtgtcg ccgcggtcca tcgagcggaa caaacgattg
      721 ccgccgaagt agaccacgcg cgggttgtgc ggcgacagat gaatcggcga gctccagtag
      781 aagcgataag tctcgttagg tccgggtgtg ggcacaacat tcgacgcgag gttcgcgccg
      841 ccgccaaaac caccgaagcc ctgcgcggct gcaaacgctg cgagttgcgc ttgtgtgtcg
      901 ggagttggcg aagcggcggg cgacgcgcct ggcgaaggac tcgcagccgc agcagcgccg
      961 cctccacctt gtccgcgacg accaggccgc ggcacgccac gcggacgaat actcacgctg
     1021 cgcccggtac gcaaatcaag acgctgtacc gcgccaccct gcgactccac aaagacgatg
     1081 ttgtgatcgg tcggatcgat ctgcgtgtag aaaccgtcac cgccgccgac gcgataccaa
     1141 tcggcgttcg tgattcccgc ctgctggttt ctcgtcatgc ttggtccacc ccacgagccg
     1201 ttgtcctgca atccgccgta aacgtagtac ggctttctca tgtcgacgcc gatcgcgtag
     1261 aactgcgcgg cgggaatcgt gttgatgaac tcccacgtcg cgccctgatc gtagctgacg
     1321 ttcaaaccgc catcgttgcc gaccagcagg tgatcgccgt tcgcgggatt gatccagatc
     1381 gcgtggttgt cgctgtgtgc gatgcctgct tgcaacgaac gaaatgtctt gccgccgtcg
     1441 gttgacttgc tgaagttcag accgccgaca tagacgttct ccgggttgcg cggatcgacg
     1501 cgaatctggc tgtagtacat cgggcgattg ttttcgttgc tgacgatgcg ccacgtgcgg
     1561 cctttgtcgt ccgaacgcca cacgcctgac ttcttcggat cgggcggcgc gggcgaaggc
     1621 gatgcgcccg gactcggcga aggacttgcg ctcggcgaag gactcggact cggagctgtt
     1681 tgacccgcaa ccgggtcttc accgccggtg ccggtgctcg gcccgacttc catctgcgcg
     1741 taaatgatgt tggggttcga acgcgaaacg tcgagaccga tgcggccgag cagtccttcc
     1801 ggcaaaccgc cgccttcgag tttcttccac gtcttgccgg cgtcgatcgt tttccagatg
     1861 ccgctgcctg gtccaccgcc gttgaaaccg tagttggtgc ggcggcgctg gtacgaagcg
     1921 gcgtagagag tcttgctgtc tgaggcgtcc atcacgatgt ccgtgaagcc ggtgtcttcg
     1981 tcgatgaact tcacgttggt ccaggtgcgg ccgccgtcag tagttttgta aacaccgcgt
     2041 tccttgttgg ggccgaagag atggcccagc accgcggcgt agacgatgtt tggatctttc
     2101 ggatcgatca cgatgcgcgc gatcgtttgc gagtcttcga ggcccatctt ggtgaacgtc
     2161 ttgccgccgt cgactgactt gtaaatgccg tcgccgaagc tggagctctg gcgattgttg
     2221 ggttcgccgg tgccgaccca gacgatgttt ggatcggatg gcgcaaccgt gacgtcgccg
     2281 atggaatgcg tgccgtaggt gtcgaagatg ggcgtgaaag tcgtgccgtt gtttgtcgac
     2341 ttccagacgc cgttcgtcgc gaacgcgaga tagatgatgt agggattctg ttcggctacc
     2401 gcgatgtcgt cgatgcggcc gcccatgctg gcgggaccga tgccgcgaaa cacaaatcgc
     2461 ttcaacaccg gatcggtcga ccagttgatc ggcgtcggag tgg
//
LOCUS       DASWTX010001265         1500 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_303204, whole genome shotgun sequence.
ACCESSION   DASWTX010001265 DASWTX010000000
VERSION     DASWTX010001265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303204"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..237)
                     /locus_tag="VGD38_19220"
     CDS             complement(<1..237)
                     /locus_tag="VGD38_19220"
                     /inference="COORDINATES: protein motif:HMM:NF016595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HEY0730224.1"
                     /translation="MSAVMEPSAKETAHESGGYVKGVAIAVVTQNEDEEKMCRVKVRF
                     PWHDQPSESYWARLATPMAGNDRGLVLIPEVGDEV"
     gene            complement(234..1340)
                     /locus_tag="VGD38_19225"
     CDS             complement(234..1340)
                     /locus_tag="VGD38_19225"
                     /inference="COORDINATES: protein motif:HMM:NF017739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="contractile injection system protein, VgrG/Pvc8
                     family"
                     /protein_id="HEY0730225.1"
                     /translation="MELVTLSKNYGNFYAPAYTVRIGRADLMRDLMVSVAQVEVDMVL
                     GAASRFTFTLNDCYSHKYNSFKTDRGEDLLPLLAFGAEVEVCMGYGDAKSTPLVLSGM
                     ITEITTSFPEGGSPELSVSGFDHGFSLTVGKNSRTWTKARDSDAAHEIASFNNLDATI
                     ETTTEKHAQIEQNQESDWEFLKKLAERNHFELYVDEQRKLHFAKPNDKADAVVRLLYG
                     QGLLSFKPEANLAGQVSRVEVYGWDRQQKKPIVGVATAGEESGLSGKSAGQHLNSFVR
                     DPSKKPTLRLRQPVFTQAEADKRAKAALSERAKQFLTGEGETIGLPEIRPDRNVELAN
                     LGSPFSKIYYIQQATHKIDANGFRTRFKVKETGL"
     gene            complement(1318..>1500)
                     /locus_tag="VGD38_19230"
     CDS             complement(1318..>1500)
                     /locus_tag="VGD38_19230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730226.1"
                     /translation="RRVVVGKERLWFIAAREYDDASEWTRIAIANDLDDPREIEPGDW
                     LLIPPIENPNGTRNPL"
BASE COUNT          279 a          441 c          405 g          375 t
ORIGIN      
        1 cacttcgtcg ccaacttccg gtatcaacac gagcccgcga tcgtttccgg ccatcggcgt
       61 tgcgagacgc gcccagtagc tctcgcttgg ctggtcgtgc cacgggaagc gaactttcac
      121 ccggcacatt ttttcttcgt cttcgttttg agtaactacc gcgatagcta ctcccttcac
      181 gtacccgcca gactcgtgtg cagtttcttt tgcggatggc tccatgaccg cgctcataat
      241 cctgtctcct tcaccttgaa tcttgtgcga aacccattgg cgtcgatctt gtgagtggct
      301 tgctggatgt aatagatctt cgaaaacggt gaaccgagat ttgcgagctc aacgttccga
      361 tcgggtcgta tctccggcaa cccgatcgtt tctccttcac cggtcagaaa ctgttttgct
      421 cgttcgctga gggccgcctt cgcgcgttta tcggcttcgg cttgcgtgaa caccggttgt
      481 cgtaaacgaa gcgtcggctt cttgctgggg tcgcgcacga acgaattgag gtgctggccc
      541 gcgctctttc cactcaatcc ggattcttcg cccgctgtcg caacgccgac gatcggtttc
      601 ttttgctgcc tgtcccagcc gtagacttcg actcgcgaaa cctggcctgc gagattggct
      661 tcaggtttga aactcaacaa tccctggcca taaagcagac gcactaccgc atcggccttg
      721 tcgtttggtt tggcgaagtg caacttgcgc tgttcgtcga cgtagagctc gaagtgatta
      781 cgctcggcaa gtttcttcaa aaactcccaa tcgctctcct ggttttgttc gatctgcgcg
      841 tgcttctcag tcgtggtctc gatggtcgcg tcgagattgt tgaagctcgc gatctcgtgc
      901 gcggcgtcac tgtcgcgggc cttggtccac gtgcgggaat tttttccgac cgtaagcgag
      961 aacccgtggt cgaatcccga gacggagagc tccggcgaac cgccttcggg aaaactggtc
     1021 gtgatttccg taatcattcc gctcaacaca agcggagttg atttcgcgtc gccatatccc
     1081 atgcagactt ccacttccgc gccaaacgcg agcagtggca gcaagtcttc accgcgatcg
     1141 gtcttgaagg agttgtactt atggctgtag caatcgttga gcgtgaaagt gaagcgcgac
     1201 gccgcgccca gcaccatgtc tacctcgacc tgggccaccg agaccatcag gtcgcgcatg
     1261 agatcggcac ggccgatgcg aaccgtgtac gccggagcgt agaagttgcc gtagttctta
     1321 gagagggtta cgagttccat ttggattctc aattggcgga atcagcagcc agtcacccgg
     1381 ttcgatttca cgcggatcgt cgagatcgtt ggcgatagct attcgtgtcc actcactcgc
     1441 gtcgtcatac tcgcgggcgg cgataaacca gagacgctct ttaccgacaa cgacgcgtcg
//
LOCUS       DASWTX010001266         4431 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_322183, whole genome shotgun sequence.
ACCESSION   DASWTX010001266 DASWTX010000000
VERSION     DASWTX010001266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4431)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4431)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4431
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322183"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1843
                     /locus_tag="VGD38_19235"
     CDS             <1..1843
                     /locus_tag="VGD38_19235"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY0730227.1"
                     /translation="GRFRVNVAERVLLRDGEIVPLTPKVFDILLTLVENSGQVVSKEE
                     LMKRVWPDTYVEEGNLTQNISLLRKALGESPGGVQFIETVPRRGYRFVAAISEKAAAV
                     SEKSKETTAFVPVPSAEIPVPVVAASPAKRRTPVFVFAAGLVIAGIIGVMYFTSKAGN
                     TATIGSIAVLPFVDESADPDAEYINDKIAESLINSLSKLPQLRVVPRSVVAGYKGKAI
                     DPRKIGEELNVRAVVTGRMRRHGDIISIQADLIDLQNVAQLWGQHYDHKLSDVLLVQD
                     DISRDIFENLRLKLNVEEKKQLEALSLYLKGRNAWNKRTGDALQEAIQFFNQAIEIDP
                     NNSAAYAGLADCYNMLVVYGRLQPKEGFPKAKEAAAKALEIDESSAEAHSSMAFIKFR
                     WDWNRTETERGFQTAIKLKPSYAPAHQWYSSYLVAVERFDEAIAEAKRTEELEPLSFV
                     ASSHLGWIYYLSGKNDEAIEQCRKILELDPSSFPARRYLGLAYEAKGMHAEAIAEFQT
                     GVKLSGSPLMLALLGHAYAVAGKKAEALQVLNDLQQLREQRYVSPYTVAAIYAGLDDK
                     EQAFKWLEVAVEGRDIWLMNLKVDPVFAKLRNERKFTDILARIRLRP"
     gene            2158..2529
                     /locus_tag="VGD38_19240"
     CDS             2158..2529
                     /locus_tag="VGD38_19240"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEY0730228.1"
                     /translation="MAERVKRVIELMQGDPSRTFSLGEMADSVNLSPPYFCYLFKTIT
                     GVPPARYLKSLRMQQAAALLTTTFLSVKEIVRRVGCTDESHFVRDFKRIYGVTPSEYR
                     NGALTAAEPRNRESRVNEIGQ"
     gene            2743..>4431
                     /locus_tag="VGD38_19245"
     CDS             2743..>4431
                     /locus_tag="VGD38_19245"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HEY0730229.1"
                     /translation="MNIAAREAVSRSVCAARPFTQATPLALALLLLIAVSTGVKANSP
                     LGQIAGTVVDQSGASVDGANVVLLGPAGTETQRSITDQRGRFSMDRVLAADYVVSVQK
                     TGFREVRRALHVNGGETVQVQFQLNVAPILETVTVTPTRGQPQDVSQATQAQEVVNAE
                     EMSWRAANILPQALRDVSGVHLQQTTSGQGSPFVRGLTGQQVLHLINGVRFNNSTFRP
                     GANQYTALIDQNAADRVEVVRGPGSTQYGSDSLGGTINVLTRPLKGFDTFTTHGNFNT
                     FFMSADLSAGVAGTVGGGSNNWGFLISASGHRTQDLRTGGGLDSHSVVTRLLGISSKF
                     LGDRLQDTAYGQYNANAKFQFQATDADVISLEYLRGTQLGLRRYDQLDGGIGNLLNSF
                     DPQVLDFFTARYDRIGAGPFDSISAVFSFNGQRDDRRSQSINNALGLRSRITDEFNLT
                     RAYGYQAQATSRIKRTHAITFGTEFYNERITSKRQDFNFSNATQAFTNVVDVRARFPN
                     GANYRTLGLFVQDVATLIPQRLTANAGLRYSIFRYHQTSQGNPLDAAGRPTVPEF"
BASE COUNT          993 a         1272 c         1233 g          933 t
ORIGIN      
        1 tggtcgcttc cgcgtgaatg tggcggaacg tgtcctgctg cgcgacggcg agattgtgcc
       61 gcttactccg aaagtcttcg acatcctgtt gacgctggtc gagaacagcg gacaggtcgt
      121 ttcaaaagaa gagctgatga aacgtgtctg gcccgacacg tatgtcgaag aaggaaacct
      181 gactcaaaac atttcgcttt tacgaaaagc actgggcgag agtccgggcg gtgtgcagtt
      241 tatcgagaca gtgccgcgcc ggggctatcg gttcgtggct gcgatcagtg agaaagccgc
      301 cgctgttagc gagaaatcga aggagaccac ggcttttgtg ccggtgcctt cggctgagat
      361 tcccgtcccg gtcgttgctg cttcgcccgc gaagagacgg actccggtgt tcgtgttcgc
      421 tgccgggctc gtgatcgccg gcattatcgg cgtgatgtac ttcacgagta aggccggcaa
      481 cacggccacg atcgggtcga ttgcagtgct gccgtttgtc gacgagtctg ctgatcccga
      541 tgctgagtat ataaacgaca agatcgcgga gagtttgatc aatagcctgt cgaagttgcc
      601 gcagttgcgc gtcgtgccgc gcagcgtggt tgccggttac aaaggcaagg cgatcgaccc
      661 gcgcaagatc ggcgaagagt tgaacgtgcg cgcggtggtg acgggccgaa tgcgccgtca
      721 cggcgacatc atcagtatcc aggccgatct tatcgacctg caaaacgtcg cacagctttg
      781 ggggcagcat tacgaccaca agctttcaga cgtcctgctg gtccaggacg acatctcgcg
      841 cgacatcttt gaaaacctgc gtttgaaact caatgtcgag gaaaagaaac agctcgaggc
      901 gttgagtctt tatttaaagg gccgcaacgc gtggaacaag cgcaccggtg acgcgttgca
      961 ggaagcgatt cagtttttca accaggcgat cgagatcgac ccgaacaact ccgccgcgta
     1021 cgccggtctc gccgactgtt acaacatgct cgtcgtctac ggccgtttgc aacctaaaga
     1081 aggttttccg aaggcgaaag aagccgcggc aaaagcactg gaaatcgatg agagttccgc
     1141 cgaagcccac agctcgatgg ctttcatcaa gtttcgttgg gattggaacc gcacggagac
     1201 cgagcgcggg tttcaaaccg ccatcaagtt gaaaccgtcc tacgcgcccg cgcatcagtg
     1261 gtacagctcg tatttggttg cggtagaacg gtttgacgaa gcaatcgcgg aagcaaagcg
     1321 gactgaagaa ttggagccgc tgtcgtttgt ggcgagttcg catctcggct ggatctacta
     1381 cttgtcggga aagaacgacg aggcgatcga gcagtgccgg aagattctcg aactcgatcc
     1441 gagctcattc cccgcgcggc gctatttggg tttggcctac gaagcaaagg gcatgcacgc
     1501 ggaagcaatc gccgagtttc aaaccggcgt gaagctttcc ggcagtccat tgatgctggc
     1561 cttgctgggc cacgcttatg cagtggcggg caagaaagcc gaagcgcttc aggtgcttaa
     1621 cgacttacag caactgcggg aacagcgcta cgtctcgccc tacaccgtcg ccgcaatcta
     1681 cgccggtctc gacgacaagg aacaggcctt caagtggtta gaggttgcag tcgaaggccg
     1741 cgacatctgg ttaatgaacc tgaaagtcga tcccgtcttc gccaaactac gcaacgaacg
     1801 aaaattcacc gacatcctcg cccgcatccg cctcaggcca tagagcttac ggcaatccgg
     1861 tattcttgat cacttttcac gtcacgtagt cctattgatc gatcccccac tcatgcgata
     1921 caactatccg cgttccgaac aggtcagccg tacatgtcct ttcgggataa ctcccaattt
     1981 cccgacaacg cccaaactgc ggctttgctg cagtagttat tagactgaac ggtacgccct
     2041 aagtgtagcg gcgcggcgtc cgtgtccagc tcagtcgaaa catccattca acatcgagca
     2101 gctaatctct cgaggcttta gctctgtgcc tcgaggcgtt tgcaacggag gggagtaatg
     2161 gctgagcgcg ttaagcgagt tatcgaattg atgcaggggg atccgagtcg tactttttca
     2221 cttggggaaa tggccgattc agtaaatctt tcaccacctt atttctgtta cctgttcaaa
     2281 accatcacgg gagttccacc cgcacgctac ctgaaatcat tgcgcatgca acaagcagca
     2341 gcgctgctga cgaccacgtt tctgagtgtg aaagaaatcg tcagacgcgt cggctgcaca
     2401 gacgagagtc acttcgtcag agacttcaaa cgcatctacg gcgtcacgcc gagtgaatat
     2461 cgcaacggcg cactcaccgc tgctgaacct cgcaatcgcg aaagccgcgt caatgaaatc
     2521 ggccaatgaa tcgtaaaaaa cgccaatgaa tagttgttgc gtctttgtgt cgactggtct
     2581 agtgtggcgc gtgcaaaaat gatcgttagt cctcggctct gattccagcc ccgcaacgga
     2641 gtcaccacgg aaacaaattg aggattttcc cgacgttcta atccaggtcc actaaacata
     2701 actactggtc cagctagtag tccatttttc ttaggagctt caatgaatat tgcagcacgc
     2761 gaagctgtgt cgagatccgt ctgcgcagcg agacccttca cgcaagcgac acctctcgct
     2821 ttagcactac tgcttttgat cgctgtttcc accggcgtca aagccaatag cccgttagga
     2881 cagatcgccg gcaccgtcgt ggatcagagc ggcgcgagtg tcgacggcgc aaacgtcgtg
     2941 ttgcttggcc cagcgggcac ggaaacgcag cgctcgatca cggatcaacg cgggcgcttt
     3001 tcaatggacc gcgtgctcgc tgcggattac gtcgtcagtg tgcagaagac cggctttcgt
     3061 gaagtgcgcc gtgcgttgca cgtaaacggc ggtgaaacgg tccaggtaca gtttcagctc
     3121 aacgtcgctc cgattctgga aacggtaacg gtcacaccaa cgcgcggtca gccgcaggac
     3181 gtttcgcaag cgacgcaagc acaggaagta gtcaacgcgg aagagatgtc gtggcgcgcc
     3241 gcgaacatcc tgccgcaagc attgcgcgac gtttccggag tgcatcttca gcagactact
     3301 tccggtcagg gctcgccgtt tgttcgcggc ttgaccggcc agcaggtgct tcatctgatc
     3361 aatggcgttc gcttcaacaa ttcaacgttc agaccaggcg cgaaccagta caccgcgctg
     3421 atcgatcaaa acgcagcgga tcgcgtggaa gtcgttcggg gtccaggttc aacgcaatac
     3481 ggttccgact cactcggcgg cacgatcaac gtgctgacgc gtccgctcaa aggcttcgac
     3541 acgttcacca cgcacggtaa cttcaacacg ttctttatga gcgccgacct ttcggccggt
     3601 gtggcaggaa cggttggcgg cggctcaaac aattggggtt ttctcatcag cgcgtcgggc
     3661 catcgcacgc aggatttgcg aacgggcggc ggacttgatt ctcactcggt cgtaacgcgc
     3721 ctgctcggca tctcttcgaa gtttctcggc gatcgtttgc aagacactgc ttacggccaa
     3781 tacaacgcga acgcgaagtt tcagttccag gccaccgatg ccgacgtgat ctcgcttgaa
     3841 tacttgcgcg gaacacagct cggcttgcgg cgttacgatc aactcgacgg cggcatcggc
     3901 aacctgctga acagtttcga tccgcaggtg ctcgatttct tcaccgcgcg ttacgatcgc
     3961 atcggcgccg gaccattcga ttccatctcc gcggttttct cattcaacgg acaacgtgac
     4021 gaccgccgtt cacaaagcat caacaacgcg ctaggcctgc gctcgcgaat tacggacgag
     4081 ttcaacctga cacgcgctta cggctatcag gcgcaggcaa catcgcgcat caaacgcact
     4141 cacgcgatca cgttcggcac ggagttttac aacgagcgga tcacgtcgaa gcgacaggac
     4201 ttcaacttca gcaacgccac gcaggcgttc acaaacgtcg tcgacgttcg cgcgcgcttt
     4261 cccaacggcg ccaactatcg cacgctcggt ctgttcgtgc aggacgtcgc gacgttaata
     4321 ccgcaacgcc tgactgcgaa cgccggtctg cgttacagca ttttccgtta tcaccagacg
     4381 tcgcagggca atcccctcga cgcggctggc cggcccaccg ttccggaatt c
//
LOCUS       DASWTX010001267         2504 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_278512, whole genome shotgun sequence.
ACCESSION   DASWTX010001267 DASWTX010000000
VERSION     DASWTX010001267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2504
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278512"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1158)
                     /locus_tag="VGD38_19250"
     CDS             complement(<1..1158)
                     /locus_tag="VGD38_19250"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY0730230.1"
                     /translation="MNSSNHRSATIPTPLRLDANPEYTGRGVTLAFLDSGFYPHPDLV
                     TPDNRIVAYHDIAGERPSLVSDEETEGWQWHGTQTSVVAAGNGRLSDGLYRGLAHESK
                     LVLVKVSERGRIAEENIARGIEWVIANRARYDIRVLNISLGGDEDVPCSRSIIDQAAE
                     EAIRHGIVVVAAAGNSGDSHSIPPANSPSVITVGGYSDNNQLDRTRLDLYHSNFGVTA
                     DGTIKPEIIAPAMWIVAPVLPLQGYQHVDGTSFAAPIVASIAAQMIEANPTLTPGAIK
                     NILVSTADRIVTEPVVRQGYGIVNARRAVELAKTEQHTLNVVGCKPPRVENGTLVFVY
                     HDDHADSVSVAGDFNGWNHATTPLKRNSSGLWTTEIVGPRAGRYEYKFVING"
     gene            complement(1207..1518)
                     /locus_tag="VGD38_19255"
     CDS             complement(1207..1518)
                     /locus_tag="VGD38_19255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730231.1"
                     /translation="MASKIYDKLKHSIRYWLLRRLPACQQAVETISQSMERQLTLGER
                     FKLKLHLWICVWCQWYLEHLHLIRQTSRAQAEKSPEMMTSATLSNEARERIRRRLTNQ
                     N"
     gene            complement(1520..2128)
                     /locus_tag="VGD38_19260"
     CDS             complement(1520..2128)
                     /locus_tag="VGD38_19260"
                     /inference="COORDINATES: protein motif:HMM:TIGR02943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0730232.1"
                     /translation="MNAPQAESPNTSPDPGRWLDDHGDYLFKYAVFRLRDNNAAEDAI
                     QETFLAALKAYEQFEGRGSERTWLVGILKHKIVDHFRRSVREAPIGEDTDEGPDHHEF
                     FDRPGAFQGHWNVNYAPNDWHATPAELIERSDFWKVFNDCLSPLPQRTASAFTLREVD
                     GLKSEEICEILSIKVNNLWVMLHRARLHLRNCLEVNWFRQEQ"
BASE COUNT          528 a          715 c          691 g          570 t
ORIGIN      
        1 gccgttgatg acaaacttgt attcgtaacg gccggcacgt ggtccaacga tctcggtggt
       61 ccacagaccg gagctgtttc gtttgagcgg cgtggtcgca tgattccagc cattgaaatc
      121 acccgcgact gaaacgctgt ctgcgtgatc gtcgtgatag acaaacacca gcgtgccgtt
      181 ttcgactcgt ggcggcttgc aacccacgac gttcagcgtg tgctgttcgg tctttgctaa
      241 ttccaccgca cgcctggcgt tgacgatgcc ataaccttgt cgaactacag gctccgtgac
      301 gatccgatcc gcggtggaaa ccagaatgtt cttgatcgcg ccgggtgtta acgttgggtt
      361 cgcctcgatc atttgcgccg cgatcgacgc cacaatcggc gccgcgaaag aggtgccgtc
      421 aacgtgctgg taaccctgta agggcaatac cggagcaacg atccacatcg ccggcgcaat
      481 gatctcaggc ttgatcgtgc cgtccgctgt gacgccaaag tttgagtgat aaagatccag
      541 tcgagtgcgg tccaactggt tgttgtccga atacccgccg accgtgatca ctgaaggcga
      601 gttcgccggc ggtatcgaat gcgagtcgcc ggagtttccc gccgcggcga cgaccacgat
      661 tccgtgtcga atcgcttcct cggcggcctg atcgatgatg ctccgcgaac acggaacatc
      721 ctcgtctccg ccgagcgaaa tattcagcac gcggatgtcg taacgcgcac gattcgcgat
      781 cacccattcg ataccacgcg caatgttttc ttcggcgatg cggccgcgct cactgacttt
      841 caccaggacg agtttggact cgtgcgctag tccgcgataa agaccatcgc tgagtcgccc
      901 attgcctgct gcgacaaccg aagtctgagt cccgtgccac tgccaccctt ccgtttcttc
      961 atcggaaaca agcgacggcc gctcaccagc gatgtcgtgg taagcgacga tgcgattgtc
     1021 aggcgtgacg agatccgggt ggggatagaa gcccgaatcg agaaaggcca atgtcacgcc
     1081 gcggcccgtg tattccgggt tcgcgtccag gcgtagcggt gtagggattg tcgcggatct
     1141 gtggtttgac gagttcatat cgcaaacttt gtcgcgattg aacagcgaaa ccttacgagt
     1201 gagtttttag ttctggttgg tcaggcggcg gcgaatgcgt tcgcgcgctt cgtttgagag
     1261 cgttgcgctc gtcatcatct ccggcgactt ttctgcctga gcacgagatg tttggcggat
     1321 gaggtgcagg tgctcgaggt accactggca ccacacgcaa atccaaaggt gaagcttgag
     1381 tttgaaacgc tcgccgagcg tgagctggcg ctccatagat tgcgagatgg tctcgacagc
     1441 ctgctggcac gccggcaacc tgcgcaacag ccagtaacga atcgagtgct ttagtttgtc
     1501 gtagattttc gacgccatct cactgttctt gtctgaacca attcacctcc aggcaattgc
     1561 gcaaatgcaa ccgggcgcgg tgcagcatga cccagaggtt gttcactttg atgctcaaaa
     1621 tctcgcagat ctcttcgctc ttgagaccgt ccacttcgcg caaggtaaaa gcgctcgcgg
     1681 tcctttgcgg caacggtgaa agacaatcgt tgaagacttt ccaaaaatcg ctgcgttcga
     1741 tcagttccgc cggcgtcgca tgccaatcgt ttggcgcata gttcacgttc caatgaccct
     1801 ggaatgcgcc cggcctgtca aagaattcat ggtggtccgg accttcatcc gtatcttcgc
     1861 cgatcggcgc ctcgcgcacg ctgcgtcgaa agtgatcgac gatcttgtgc ttcaaaattc
     1921 cgaccagcca cgtgcgctcc gagccgcgtc cttcgaactg ttcgtaagcc ttgagcgcgg
     1981 cgagaaaagt ttcttgtatc gcatcttcgg ctgcgttatt gtcccgcagt cgaaagaccg
     2041 catacttgaa aagataatcg ccgtggtcgt ccagccaacg gccagggtct ggggatgtat
     2101 tgggggactc agcctgtggc gcgttcatac caatcgaaaa ttcctgggcc aatggtcgta
     2161 gagtagtgca tgcaccgttt aagcgacaag acgtgccggg attgcgggaa cgtactcgag
     2221 cccacagcgc gcgggtgtcc caggtgcgcg atgaacttcg aggccgaaaa catgatcgac
     2281 caattcatct tgcgccgcct cgttcccagc ctattccttg tcgttttagc cgtcgtcgcg
     2341 ttactttacc tgctgcgttg accagacgta tttgtacctc ctcgacggta ttagtcgtac
     2401 tggaagtcta aaccttacaa ctgaatctac ggaaccggtc gcaaactcaa cctcgaacca
     2461 actcccccac aaccgaatta ccaggagaaa atagaaaaat gaaa
//
LOCUS       DASWTX010001268         3571 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_39735, whole genome shotgun sequence.
ACCESSION   DASWTX010001268 DASWTX010000000
VERSION     DASWTX010001268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3571
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39735"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1805
                     /locus_tag="VGD38_19265"
     CDS             <1..1805
                     /locus_tag="VGD38_19265"
                     /EC_number="1.5.1.20"
                     /EC_number="2.1.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF006396.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional homocysteine
                     S-methyltransferase/methylenetetrahydrofolate reductase"
                     /protein_id="HEY0730233.1"
                     /translation="GAMGTMLYAKGVYINRCYDELNLSNPDLVREIHTEYIRAGADII
                     ETNTFGATAHKLQQYGLEANMHEINALAARIAREAAGDRAYVAGAIGPLGLRIEPYGP
                     TSFEEAKELFKAQAVGLLEGGVDLFCLETFSDVSEIRQAIAAIRELCDLPIVAQMTIM
                     TDGNTLFGTTPELFTERLDNWGADVIGLNCGVGPAIILGALDKMRAVTKKKLSAQPNA
                     GLPRDVQGRQFYMCSPEYMSKFAKRFIQSGAKFIGGCCGTTPAHIKLISDSVRAASPR
                     AQRTTFAGATTQVVEITPPDIKVVPPDERSEWGRKIAHGEFVTSVEVLPPKGVDAKKT
                     LDSIRLLKDAGVDGVNIPDGARAQSRMSALATAVLVEQQIGIETVLHYCCRDRNLLGM
                     MSDLLGAAALGLRNILVITGDPPKMGPYPDATAVFDIDSIGLTNMVNKLNHGLDLGNN
                     PIGEPTSFCIGVGVNPGAINLDEEIKRFEWKVEAGAQYAITQPVFDTEQLRDFLKRIQ
                     HVRIPIIAGIWPLVSYRNAEFLHNEVPGVRVTPSIMERMRDASAISKEAGRDEGLKIA
                     RESLMEVRDEIQGVQVSAPFGNVKYALEVFDVLH"
     gene            complement(1802..2947)
                     /locus_tag="VGD38_19270"
     CDS             complement(1802..2947)
                     /locus_tag="VGD38_19270"
                     /inference="COORDINATES: protein motif:HMM:NF026257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEY0730234.1"
                     /translation="MLAVNNEAGCWPTPNQELLLRAALLQGEPALAAWNEWRRTVNID
                     VIDYGSHRMVPQVYRNMQRHGIKDPLMDRMKGVYRYYLYKNEILMHRIGSLLAAFETA
                     GIQTMVLKGAALIPLYYKESGLRPMLDADVLVHEHQAEQAMDVLARLQWKSFRFGQPQ
                     TRIPIVHSTPFEDGGGRQMDLHWHLFWECFNASDDEDYWETAIPIQVGGTKTLALSAT
                     DQLLHTCWHGARWNEVPPIRWVADAMAILGASAAEIQWQNLAKKAKRHRIVLPVKDSL
                     EYLKKKFDAPVPETVIKSLSAVRTSKMERENYELVLNPMTPPTTAKILRMLYYDYRWL
                     SSSTNGRFKTLVFAKHLQAKWNIDHLWHVPFYMSMRMVRRVLTTRSA"
     gene            complement(2934..>3571)
                     /locus_tag="VGD38_19275"
     CDS             complement(2934..>3571)
                     /locus_tag="VGD38_19275"
                     /inference="COORDINATES: protein motif:HMM:NF018877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AGE family epimerase/isomerase"
                     /protein_id="HEY0730235.1"
                     /translation="LMEALTELYSEVKDASVRDSLVETIELLCTKFYPPNVSESCEYQ
                     LTDWKPVANDELSNLSHGHMVEFAWLLLHAQHALGKPPDWDHFETLVRHTLTYGFDHE
                     RGGFYFRGKPHEPACDTTKFWWVQAEGLSALTDAAARSDEYKEPLAKLVDWILNHQIR
                     SDDGVWFVSTDAAARPLNVKKAGEWKAAYHEVRAITKFVQTFAPKSQYARC"
BASE COUNT          745 a         1030 c         1033 g          763 t
ORIGIN      
        1 acggcgcgat gggcacgatg ctctatgcca agggcgtcta tatcaatcgt tgctacgacg
       61 aactgaatct cagtaatccc gacctggtcc gcgagatcca caccgaatac atccgcgccg
      121 gcgccgatat catcgagacc aacacgtttg gcgcaaccgc gcacaaactc cagcagtacg
      181 gactcgaagc gaacatgcac gagatcaacg ccctcgccgc gcgtatcgcg cgcgaagcgg
      241 ccggcgatcg tgcttacgtg gctggtgcga ttggtccact gggcctgcgc atcgagccgt
      301 atggtccaac ttcgtttgaa gaagcgaaag agctgttcaa ggcgcaggcc gtgggactgc
      361 tcgaaggcgg cgtcgatctc ttctgtctcg aaaccttctc ggacgtttcc gagattcgcc
      421 aggccatcgc cgcgattcgc gagctctgcg atctgccgat cgtcgcgcag atgacgatca
      481 tgaccgacgg caacacgctc ttcggcacca cgcccgagct cttcaccgag cggctcgata
      541 actggggggc cgatgtgatc ggtctgaatt gcggcgttgg accagcgatc attctcggcg
      601 cgctcgacaa gatgcgcgca gtcacgaaga aaaaactgtc tgcacagcca aacgccggat
      661 taccgcgcga cgtgcagggg cgacagtttt acatgtgctc gccggagtac atgtccaagt
      721 ttgcgaaacg gtttattcag tcgggcgcga agtttattgg cggctgctgt ggcaccacgc
      781 cggcgcatat caaactgatc agcgattcgg ttcgcgcggc gtctccgcgc gcgcagcgta
      841 cgacgtttgc cggcgcgacg acgcaagtgg tcgagatcac gccgccggat atcaaggttg
      901 tgccgccgga tgagcgatcc gagtggggca gaaagatcgc gcacggcgag tttgtgactt
      961 cggtcgaagt gctgccgccg aagggtgtcg acgcgaagaa gacgctcgat tccattcggt
     1021 tgttgaaaga cgcgggcgtt gacggtgtga acattcccga cggcgcgcgc gcacagtcgc
     1081 gtatgagcgc actcgcgact gcggtgctgg tcgaacaaca gatcggcatc gaaacagttc
     1141 tgcactactg ctgccgcgat cgaaacctgt tgggcatgat gtccgatcta cttggcgctg
     1201 cggcgctcgg gctgcgcaac atcctcgtga tcactggcga tccgccgaag atgggaccat
     1261 atccggatgc gacggctgta ttcgacatcg attcgatcgg cttgaccaac atggtgaaca
     1321 agctgaatca cggtctcgat ctcgggaaca atccgatcgg cgagccgacg tcgttctgca
     1381 tcggcgtcgg cgtgaatccg ggcgcgatca atctggacga agagatcaag cggttcgagt
     1441 ggaaagttga agcgggcgcg cagtatgcga tcacgcagcc ggtgtttgac acggaacagt
     1501 tgcgcgattt cctgaagcgc attcaacacg tacgtattcc catcatcgcg ggcatctggc
     1561 cgctcgtctc gtatcgcaac gccgagtttc tacacaacga agttcccggt gtacgtgtga
     1621 cgccgtcgat catggagcgc atgcgcgacg cgtcggcgat cagcaaagaa gcgggacgtg
     1681 atgaaggact gaagatcgcg cgcgagtcgc tgatggaagt tcgcgacgag attcagggtg
     1741 tgcaggtttc agcgccgttt ggcaacgtga agtatgcgtt agaggtgttc gacgttcttc
     1801 actaagccga cctggtggtg aggacgcgtc tgaccattcg catcgacatg tagaacggga
     1861 cgtgccagag gtggtctatg ttccacttcg cttgcaagtg cttcgcaaaa accagcgtct
     1921 tgaaacgtcc gttcgtgctg ctcgataacc accggtagtc gtaataaagc atccgcagga
     1981 tctttgcggt cgtaggcggc gtcatcggat tcaatacgag ctcgtagttc tcgcgctcca
     2041 ttttcgaggt gcgaacagcc gacaatgatt tgatcactgt ttcaggcaca ggcgcgtcaa
     2101 acttcttctt caaatactcg agcgaatcct taaccggcaa cacgatgcga tgtcgctttg
     2161 ccttcttcgc taaattctgc cactgaattt ccgcggccga cgcacccaaa atcgccatcg
     2221 catccgcgac ccagcgaatc ggcggcactt cattccacct cgcgccatgc caacaagtgt
     2281 gcagcagttg atccgtcgca cttaacgcga gcgtcttcgt gccaccgact tgaatcggga
     2341 ttgctgtttc ccaatagtcc tcatcgtcgc tcgcgttgaa acactcccag aacaggtgcc
     2401 aatgtagatc catctgccgc ccgccgccat cttcgaaagg cgtcgagtgg acaatgggaa
     2461 tacgcgtctg cggttgcccg aagcgaaacg acttccactg caatcgcgcg agcacgtcca
     2521 tcgcctgctc ggcctgatgc tcatggacca gcacgtcggc gtcgagcatt ggtctcagac
     2581 cgctttcctt gtagtagagc gggatcaggg ccgcgccctt caggaccatc gtctggatgc
     2641 ccgccgtttc gaacgccgcg agcaggcttc cgatccggtg catcaggatt tcattcttgt
     2701 agagatagta gcgatagacg cccttcatgc ggtccatcag cgggtctttg attccgtggc
     2761 gctgcatgtt tcggtatacc tgcgggacca tgcggtgcga accgtagtcg atgacgtcga
     2821 tgtttaccgt gcggcgccat tcattccacg ccgccagcgc aggctcgccc tgcaacagcg
     2881 cggcgcgcag cagtagttcc tgattgggag tgggccagca gccggcctcg ttattaacag
     2941 cgagcatatt gagactttgg agcaaacgtc tgaacgaatt tagttatcgc gcgcacttcg
     3001 tgataagccg ctttccactc accggctttc ttgacgttca gcggccgcgc ggcggcgtcg
     3061 gtgctgacga accaaacgcc atcgtctgaa cgaatctggt ggttgagtat ccagtctacc
     3121 aacttagcga gcggctcttt gtactcatcg gaacgcgcgg cggcatctgt cagtgccgac
     3181 aaaccttcgg cctgtaccca ccagaacttc gttgtgtcgc aagcaggctc atgtggcttg
     3241 ccgcgaaagt agaacccgcc gcgctcgtga tcgaaaccat acgttaacgt atgccgcacg
     3301 agagtttcga agtgatccca atcgggcggc tttccgagtg cgtgttgagc gtgaagtagt
     3361 aaccacgcaa attcgaccat gtgaccgtgc gagagatttg ataactcgtc gttcgcgacg
     3421 ggcttccaat ccgtgagctg gtactcacac gattcgctca cgtttggcgg atagaatttc
     3481 gtgcaaagca gttcgatcgt ttcaaccagt gaatctcgca cggaagcgtc tttcacttcc
     3541 gagtaaagct ctgtcagcgc ttccatcaaa t
//
LOCUS       DASWTX010001269         3154 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_303278, whole genome shotgun sequence.
ACCESSION   DASWTX010001269 DASWTX010000000
VERSION     DASWTX010001269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3154
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303278"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..358
                     /locus_tag="VGD38_19280"
     CDS             <1..358
                     /locus_tag="VGD38_19280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730236.1"
                     /translation="SDSLSDFSKASIAALVLGCTHYPILKDIIAETVGQQITLIDSGA
                     ATAADVESLLENSALKHDEPLGLYQERRLCDDLDHFYVTDAAERFAKVAERFLGSAPS
                     ILEAVEIWGHDELRTH"
     gene            336..1085
                     /gene="rph"
                     /locus_tag="VGD38_19285"
     CDS             336..1085
                     /gene="rph"
                     /locus_tag="VGD38_19285"
                     /inference="COORDINATES: protein motif:HMM:TIGR01966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004549 - tRNA-specific ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HEY0730237.1"
                     /translation="MMSFARTDGRAHDELRPVQITPGFLSYAEGSVLIEMGSTRVVCA
                     ASLEDRVPPFLRSSGQGWLTAEYAMLPRSTQTRTSRETGRGGPSGRTHEIQRLIGRSL
                     RAVADMKVLGERTLTIDCDVLQADGGTRTAAITGAYVAFALASNQLLKIGKITRPLTT
                     HQVAAVSVGIVNGTPLLDLKYDEDSKAEVDMNVVCTSDGRFIELQGTAEREPFSRAQM
                     DDLLALATHGIEQLIALQQAVIGAVANGKAV"
     gene            1105..1611
                     /locus_tag="VGD38_19290"
     CDS             1105..1611
                     /locus_tag="VGD38_19290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730238.1"
                     /translation="MKRIVTFSLVLISLLAQVVSAQQAYTHDKVEYTFDLPSQTWRAI
                     LEPDAAHEHPEFVYGDRLDGYLTIRKEVVEAGTTPSELARRDQDLKLRFLPGFVQGKE
                     ENFNGRLDGVTISYEYVRTGKTMLGRTYYLQVDNRTIYALRFTGLRDKLSRIRNQTDI
                     IARTFKLK"
     gene            1611..2024
                     /locus_tag="VGD38_19295"
     CDS             1611..2024
                     /locus_tag="VGD38_19295"
                     /inference="COORDINATES: protein motif:HMM:NF013052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SET domain-containing protein-lysine
                     N-methyltransferase"
                     /protein_id="HEY0730239.1"
                     /translation="MKLQLARGLAIKPSRIHGKGCFATIPFKKRHKIAEYTGEKITNA
                     EARRRAHRRMLRICEVNNRWSLDGSRGGNGTHYINHSCTPNAFMQILHNHILFRALRD
                     IEAGEEITIDYEQTLHSDDKRCVCGASECRGTINR"
     gene            complement(2103..>3154)
                     /locus_tag="VGD38_19300"
     CDS             complement(2103..>3154)
                     /locus_tag="VGD38_19300"
                     /inference="COORDINATES: protein motif:HMM:NF020037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0730240.1"
                     /translation="CEASTLAHIEDGVAIAYLDGTIALTNPTLLRYAGLTPERAQQLD
                     LIGLLNNFRTGIFDEPEIAVRRVLQTGIDYAGELDFDQKDQTLKLRISLLRDQQDAGG
                     GEPIGIAVYVEDLSQTKEYEKLKSDMISLMSHELRTPLTSINGFAELLTADESIPPQA
                     REFVSIIANESQRMSRMINTFLSVTQLQRSDKQEVLKIPLRLDEVVRETIASLQPVAK
                     KKRIRLIEHPAHRIPPVAADKSLITQAVKNLVHNAIKYSPERTTVTVSTALEAETVRV
                     CVEDRGYGIPAESRERVWDKFYRVVREGQEKDEESTGLGLSFVREVVEQHGGNVELDS
                     EEGRGSKFSFTLPRL"
BASE COUNT          704 a          925 c          879 g          646 t
ORIGIN      
        1 gagcgattcc ctgagcgact tcagcaaagc atcgatcgcc gcactcgtgc ttggctgcac
       61 tcactacccg atactaaaag acatcatcgc tgaaaccgtg ggacaacaga tcacgttgat
      121 cgactcaggc gccgcaaccg ccgccgacgt cgaatcttta ctggaaaact ccgcattgaa
      181 acacgacgaa cctctcggtt tgtatcaaga gcgccgcctt tgtgacgacc tcgatcattt
      241 ttatgtcacc gacgcagccg aaaggtttgc taaagtagct gaaagattct taggatctgc
      301 tccgtcaatt ctcgaggccg tggaaatttg gggacatgat gagcttcgca cgcactgatg
      361 gccgtgccca tgacgaattg cggccagtgc aaataactcc cggcttcctg tcttatgccg
      421 aaggttcggt attgattgag atgggaagca ctcgcgtcgt ctgtgccgcg tcactcgaag
      481 atcgagtgcc gccattcctg cgcagttccg gacagggatg gctcaccgcc gagtacgcga
      541 tgttgccgcg ttcaacgcag acgcgaactt cgcgcgaaac cggacgcggc ggtccatcag
      601 gccgcacgca cgaaattcaa cgactgatcg gcagaagcct gcgcgccgtg gcagacatga
      661 aagtgctcgg cgaacgcacg ttgacgatcg attgcgacgt tttgcaagcc gacggcggca
      721 cacgcactgc cgcaatcacc ggcgcgtacg tcgcattcgc tctcgccagc aatcaactgc
      781 tgaagatcgg aaagatcacg cggccgttga cgacgcacca ggtcgcagcc gtcagcgtcg
      841 gcatcgtcaa cggcacgccg cttctcgatt tgaagtacga cgaagattcg aaggcggagg
      901 tcgacatgaa cgtggtttgc accagcgatg gacggttcat cgagctgcaa ggcacggccg
      961 aacgcgagcc gttcagccgg gcccagatgg acgatctgct ggcgctggcg actcacggaa
     1021 tcgagcagtt gatcgccctc caacaggcgg taattggtgc agtagcgaac ggtaaggctg
     1081 tttagggcat ccgaaggagt tgatatgaaa cgcatcgtga cgttcagttt ggtgttgata
     1141 agtttgttgg cgcaggtggt ctccgcccaa caagcctaca cgcatgacaa agtcgaatac
     1201 acgttcgacc ttccttcaca gacctggcgc gcgattctgg aaccggacgc ggcccacgaa
     1261 catcccgagt ttgtttacgg cgaccggctc gacggttacc tgacgattcg caaagaagtg
     1321 gttgaggccg gcaccacgcc gtccgagctc gcgcgccgcg atcaggacct gaaactccgc
     1381 ttcctgcccg gctttgtgca gggtaaagaa gaaaatttca acggccgtct cgacggcgtc
     1441 acgatctctt acgagtacgt gcgcaccgga aaaacgatgc tcggacgcac ctactacttg
     1501 caggtcgata atcgcaccat ctacgcgcta cgtttcactg gcttgcgcga caagttgagc
     1561 cggattcgca atcagacaga catcatcgcc cgcaccttca aactcaaata gtgaagctgc
     1621 aactcgcccg cggattagca atcaagcctt cgcgtattca cggcaaaggc tgcttcgcga
     1681 ccataccttt caaaaagaga cacaagatcg ccgagtacac gggcgagaag atcacgaacg
     1741 ccgaagcgcg gcggcgtgcg catcgacgca tgctcaggat ttgtgaggtc aacaaccgct
     1801 ggagtttgga cggcagccgc ggcggaaacg ggacgcacta catcaatcac tcgtgcactc
     1861 cgaacgcgtt catgcagatc ctgcacaacc acatcctgtt tcgcgcgttg cgggacatcg
     1921 aagccggcga agagatcacg atcgattacg aacagacgct gcactcagac gacaaacgat
     1981 gcgtttgcgg cgccagcgag tgtcgcggaa caatcaatcg ctagttccga aaagttttga
     2041 gttcaagctt tagcttgtta gcgccagcag cctaaaggct gaactcaaaa ctgaacacca
     2101 acttaaagtc gcggcaaggt gaagctgaac ttcgagcctc gcccttcttc agaatccaat
     2161 tccacgtttc cgccgtgctg ctcgaccact tcacgcacaa acgacaaacc cagtcccgtc
     2221 gactcttcgt ctttctcctg tccttcgcga acgacgcggt agaacttgtc ccaaacgcgc
     2281 tcgcgtgact cagcgggaat cccgtaaccg cgatcctcaa cacaaacgcg cacggtctca
     2341 gcttcaagcg ccgtggagac ggtcacggtc gtacgttccg gactgtactt gatcgcgttg
     2401 tggaccaggt tcttaaccgc ctgcgtgatc aaactcttgt cagcggcaac cggcggaatg
     2461 cgatgcgccg ggtgttcgat caggcgaatg cgtttcttct tcgcgacggg ttgtaaagac
     2521 gcgatcgtct cgcgcacgac ttcatccagc cgcagcggaa tcttcaacac ttcctgcttg
     2581 tcgctgcgtt gcaactgcgt caccgaaagg aaggtattga tcatgcgcga catgcgctgc
     2641 gattcgttcg cgatgatcga aacaaactcg cgcgcctgcg gtggaatgct ttcgtcagcc
     2701 gttaacagtt cagcaaaacc gttgatgcta gtgagcggcg tgcgcagctc gtgcgacatc
     2761 agcgagatca tgtcactctt cagtttttca tactctttcg tttggctgag atcttcgacg
     2821 taaacagcga tgccgatcgg ttcgccaccg cccgcgtcct gctgatcgcg cagcagcgag
     2881 atccggagtt tgagcgtctg gtccttttga tcgaagtcga gttcgccggc gtaatcgatt
     2941 ccggtttgca gcacgcggcg cacggcgatc tcgggttcgt cgaagatgcc ggtgcggaag
     3001 ttgttgagca gcccgatgag gtccaactgt tgcgcgcgct ccggcgtgag tccggcgtaa
     3061 cggagaaggg tcggattcgt caacgcgatc gtgccgtcga gatacgcgat cgcgacgccg
     3121 tcttcgatgt gggccagcgt gctcgcttcg catc
//
LOCUS       DASWTX010001270         2455 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_39783, whole genome shotgun sequence.
ACCESSION   DASWTX010001270 DASWTX010000000
VERSION     DASWTX010001270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2455)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2455)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2455
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39783"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1485
                     /locus_tag="VGD38_19305"
     CDS             <1..1485
                     /locus_tag="VGD38_19305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730241.1"
                     /translation="AGIPQMQLRQWYADAFVHDSFQLSRNTTVQIGLRYEYMSPLVDI
                     RYTNTNLTFENGVPQVFIGGQQGFPEGLNDSNKLKFAPRFGISHNLHKHGLVLHAAVG
                     IFFTPVDMNTWCNQRHNVPYVFPETQQSDNFIPAPGIVASHFNFAPAVLGVTTVSFAA
                     FEVDAPPQYIEQWSGSVEKSLGAETTLEIGYLGSHGLHLQRSHLINNAPPGPGAIGPR
                     RPFRTLSFVPGMVLPDDIAVTSTTFPVSGINLLENSAQSWYQAGYVNVRRRFSRGLTF
                     LANYTYAKNLSDAPDFRSPMFESAAPQNNSDLRKEKGLACDVRHRFAVSMVYGIPALK
                     QSGFVNTLTKNWRLSAIYQAQSGFPFTISVFGDTANAGTLLGENPIRANLTGQPIFDE
                     NSRTADRWFNPGAFATPAAFTFGNVGRNTVYGPGRQTLDLALQREFTMTETVKLQVRA
                     EAFNALNHTNLGTPNRFVNTPQFGTITEAATPGREIQFGVRLSF"
     gene            complement(2072..>2455)
                     /locus_tag="VGD38_19310"
     CDS             complement(2072..>2455)
                     /locus_tag="VGD38_19310"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0730242.1"
                     /translation="IVLTTYDGDEDIYRSLQAGARGYLLKDVFFEELETAIRGVHAGS
                     RHIPAAIAMRLAERMTSSDLTGREMEVLELIVQGQSNKEIGASLKISEATVKSHINNI
                     LSKLGVTDRTQAVTTALQRGLVHLR"
BASE COUNT          525 a          679 c          713 g          538 t
ORIGIN      
        1 gccggcatcc cgcaaatgca gttgcgccag tggtacgccg acgcttttgt acacgacagc
       61 tttcagcttt cacgcaacac gacggtccag attggtcttc gttatgaata catgagcccg
      121 ctggtggaca ttcgttacac gaacacgaac ctcacgttcg agaatggcgt gccacaagtt
      181 tttatcggcg gtcagcaggg ttttcccgaa ggcttgaatg attcaaacaa actcaagttc
      241 gcgccgcgct tcggcatctc acataacctg cacaagcacg gactggtatt gcacgcggcg
      301 gttggcatct tcttcacgcc ggtcgatatg aacacgtggt gcaatcaacg ccacaacgtg
      361 ccttatgtgt ttccggaaac acagcagagc gacaacttca ttcctgctcc gggaatagtc
      421 gcgagccact tcaactttgc gccggcagtg ttgggagtta cgaccgtgag tttcgcggct
      481 tttgaagtcg acgcgccgcc gcaatacatc gagcagtgga gcggctcggt ggagaagagt
      541 ctcggcgcgg aaacgacgct cgagatcggc tatctcggtt cgcacggatt gcacttgcaa
      601 cgttcgcatc tgatcaataa cgcgcctccc ggtccgggcg cgattggacc acgccggccc
      661 ttcaggacgt tgagcttcgt gccgggcatg gttttgccgg acgacatcgc ggtcacgagt
      721 acgacgtttc ccgtgagtgg tatcaatctg ctcgagaatt ccgcgcagag ttggtaccag
      781 gctggttacg tcaacgtgcg gcgcagattc agccgtggtt tgacgttcct cgcaaactac
      841 acgtacgcga agaaccttag cgatgctcct gatttccgtt cgccgatgtt tgaatcagcg
      901 gcgccgcaga acaattcaga tctgaggaaa gagaaaggac ttgcgtgcga tgtgcgtcac
      961 cgttttgcgg tgagcatggt ctacggcata cccgcgttga agcagagcgg cttcgtgaat
     1021 acgcttacga agaactggcg cttgtcggcg atttaccagg cgcagagcgg cttcccgttc
     1081 accatctcgg tgtttggcga cacggcgaat gcgggcacgt tgttaggcga gaatccgatc
     1141 agggcaaacc ttactggcca gccgatcttc gatgagaact cgcggacggc cgacaggtgg
     1201 ttcaaccccg gcgcgtttgc gacaccggcg gcattcacgt tcggcaacgt cggacgcaac
     1261 acggtctacg gtcccggcag acagactctg gatctcgcgc tgcaaaggga attcacgatg
     1321 acagagactg tgaagctgca agtacgcgcc gaagccttca acgcactcaa tcacacgaac
     1381 ctcggaactc cgaaccgttt cgtcaacacg ccgcagttcg gaacgatcac ggaagccgcg
     1441 acaccaggac gtgagataca gttcggagtt cggttgtcgt tctaagctgt gcgcttggcc
     1501 tgagaatcat gtttactccg gctccgccgc cggatgtgag gcgaggctcc gcctcgccgg
     1561 aaggttacac aaaacgagtt ggggctatgc ccctggttcg ggctttgccc ctttaggcca
     1621 taggccgtac caggggcaca gcccccttta aagttgtttc aagcgcctcc ggcgaggcgt
     1681 agcctcgcct cacatccggc ggcggagccg cagcatgagg gtcgcgcaga gccgaagcat
     1741 gagagttttg ggcagagccg aagcgatgag ggttcgggca gagccgaagc gatgagggtt
     1801 cgggcagagc cgttctagtt aagttgtgcg ttcagaaata agattgggaa gctggtttgt
     1861 gaggtcccag tcccgggttc atattcgtca acttcatggc ccgtcacaac aaagttttta
     1921 ggcaggaaaa cggaccgctc aaatcaacct aaccagggac tgggattaac tacgtgacgg
     1981 agattaccag cgactcgagt ttgtgtcatg accctgaagg tggtaacggg gatcaatctt
     2041 tggtttgagg caagattgaa caagaacccg gttagcgcag gtggaccaac ccgcgttgca
     2101 gggccgttgt tacagcctgc gtgcgatcgg tgacgccgag cttgctgaga atgttattga
     2161 tgtgactctt aaccgtcgct tcgctgatct tcaggctcgc gccgatttct ttgttgctct
     2221 ggccctgcac gatcagttcc agcacttcca tctctctgcc ggtcaaatca gagctggtca
     2281 ttcgctctgc aagccgcatg gcgatcgcgg cgggaatgtg ccgcgagccc gcatgcacgc
     2341 ctcttatcgc cgtctcaagt tcttcgaaga agacatcctt caacagataa cctctggctc
     2401 cggcttgtag cgatcggtag atgtcttcat cgccgtcata ggtagtaagg acgat
//
LOCUS       DASWTX010001271         2524 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_82744, whole genome shotgun sequence.
ACCESSION   DASWTX010001271 DASWTX010000000
VERSION     DASWTX010001271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2524
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82744"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(97..507)
                     /locus_tag="VGD38_19315"
     CDS             complement(97..507)
                     /locus_tag="VGD38_19315"
                     /inference="COORDINATES: protein motif:HMM:NF014019.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjQ family protein"
                     /protein_id="HEY0730243.1"
                     /translation="MSSDAVQRTPYAVSPPRYSVAHQMVTTAFELPNYRIVQNLGVVR
                     GIVVRSRNVFANIGATFQTLVGGNITVWTSLCEQTRAEAFEIMIQHATEVGANAVIGA
                     RYDTTELSQGVTEVLAYGTAVIVEPVNPGETYRS"
     gene            complement(504..908)
                     /locus_tag="VGD38_19320"
     CDS             complement(504..908)
                     /locus_tag="VGD38_19320"
                     /inference="COORDINATES: protein motif:HMM:NF013222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HEY0730244.1"
                     /translation="MTTKQGNPEYRERVYKIVRRIPRGRVMTYGQIAELLGEGYTPRT
                     VGFAMHSSPEGTPWHRVLNAQGATSTGRIVLPHDKQQRLLEQEGVVFNKNNRCDLETY
                     LYIPKTKTVSQKTTLYKSAQSDKSTRKRGGKS"
     gene            complement(905..1549)
                     /locus_tag="VGD38_19325"
     CDS             complement(905..1549)
                     /locus_tag="VGD38_19325"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HEY0730245.1"
                     /translation="MPIYDLSVPLSSALPTYPGDPGIQIQDWSKLANGDAANVSALSF
                     GAHTGTHVDAPAHFIAGTKKVESLDLEILIGEAQVIQVPDEKRFIDEEFVVANCAAGS
                     TRVLFKTRNSTFWSGDFTEFRTDFTYLDLPAAEKLVQLGVKLVGIDYLSIEKFNSKDH
                     EVHHALLSREVIVVEGLNLAGVLAGKYELICLPLRLRSNLGDGAPARAVLRTIE"
     gene            1578..2375
                     /locus_tag="VGD38_19330"
     CDS             1578..2375
                     /locus_tag="VGD38_19330"
                     /inference="COORDINATES: protein motif:HMM:NF014658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis protein"
                     /protein_id="HEY0730246.1"
                     /translation="MTTPFRLAASSYLNSAPLIWSFLNGAKRGQVDFVEAVPARCADM
                     LSRSEVEGALIPVIEYQRIAGGALVPDVCVGSQKEVLSVVLVSKDTELEQIRSVALDE
                     SSRTSATLVKVIFREFLDHEPAWTVRTPRLEEMLERNDAALIIGDPGMTFPRTGLKVW
                     DMANLWRTFTGLGFVFAMWMIADRGVERAQRVDFAGARDEGVAHIEEIVAEYKDKIPM
                     PVSELRKYLTENIVFRVDNSMERGLQLYFELAAKHQLIESVKPLRFV"
BASE COUNT          529 a          716 c          728 g          551 t
ORIGIN      
        1 cagattcaac ttcgataccg agaagcttga gatacggaac agactcacga gcggcttcaa
       61 tacgccggcg ttgctcgtcc gtcaggtccg gcgtgttcat gagcgataag tctctccggg
      121 attcaccggc tccacgatca cggccgtccc gtacgcgagc acttccgtca caccctgcga
      181 aagctcggta gtatcgtaac gcgcgccgat gacggcattc gcgccgacct ccgtcgcgtg
      241 ctggatcatg atctcaaaag cctccgcgcg agtctgctcg cacaggctgg tccacacagt
      301 gatgttgccg ccgacgagag tctgaaacgt cgcgccgata ttcgcgaaga cgtttcgcga
      361 gcgcacgacg atgccgcgca cgacgccgag gttctgcacg atgcgatagt ttggcaactc
      421 gaacgccgtc gtcaccattt gatgagcaac ggaataacgc ggcgggctga cggcgtaagg
      481 agtgcgctgc acggcatcgg aactcatgat tttcctcctc gcttgcgagt gcttttatca
      541 gactgggcgc ttttataaag agtcgtcttc tgcgaaacag ttttcgtttt cgggatgtac
      601 aggtaggttt cgagatcgca acggttgttc ttgttaaaga ccacgccctc ctgttcgagc
      661 agacgttgct gcttgtcgtg cggcaacacg atgcggccgg tcgacgtcgc gccctgtgcg
      721 ttcagaacgc gatgccacgg cgtgccttcg ggcgacgagt gcatcgcgaa gccgacggtt
      781 cgcggcgtgt acccctcgcc gagcagttcg gcgatctggc cgtaagtcat cacccgcccg
      841 cgcgggatgc ggcgcacgat cttgtaaacg cgctcgcggt actcagggtt tccctgcttc
      901 gtcgtcattc gattgttctc aacacggcgc gcgccggcgc accgtcgccg agattgctgc
      961 gcagccgcaa aggcaaacag atcaattcat actttcccgc caacacaccc gcgagattca
     1021 agccctcgac gacgatcact tcgcgcgaga gcagtgcgtg atgaacttcg tggtccttcg
     1081 agttgaattt ttcgatcgac aggtagtcga ttccaacgag cttcacgcca agttgaacca
     1141 gtttctctgc cgcgggtaaa tccaggtaag taaaatccgt tctaaactcc gtaaaatccc
     1201 cgctccagaa ggttgaattg cgcgtcttga aaagcacgcg cgtgcttcca gccgcgcagt
     1261 tcgctacgac aaactcttca tcaataaacc gtttctcgtc cggaacctgg ataacctgcg
     1321 cctcaccaat cagaatctcg aggtccaacg attcgacttt cttcgtgcct gcgatgaaat
     1381 gcgcgggcgc atcgacatgc gttcccgtgt gcgcgccaaa gctgagcgcc gagacgtttg
     1441 cggcgtcgcc gttcgccagc ttggaccagt cctgaatttg aatccccgga tcgccggggt
     1501 aagtaggcag agcgctactc aggggaacgc tcaagtcgta aattggcatc ggcgaatagt
     1561 aatatactga cagccacatg actacaccgt ttcgtctcgc cgcatcaagt tacctaaatt
     1621 ccgcgccgct catctggagt tttctcaacg gagcgaagcg cggccaggtg gattttgttg
     1681 aagccgtgcc ggctcgttgc gccgacatgt tgtcgcgcag tgaagttgaa ggcgcgctga
     1741 ttccggtgat tgagtatcaa cgcatcgcgg gcggcgcgct cgttccggat gtttgtgtcg
     1801 gctcgcaaaa ggaagtgctg agcgtggtac tggtttcgaa agacacggag ctcgagcaaa
     1861 ttcgcagcgt cgcgctggac gaatcgtcaa gaacttccgc gacgctggtt aaagtcatct
     1921 tccgcgagtt tctggatcac gagcccgcgt ggaccgtgcg tacgccgcga ctcgaagaga
     1981 tgctcgaacg aaacgacgct gcgctcatca tcggagatcc ggggatgacg tttccgcgca
     2041 cgggcttgaa ggtctgggac atggcaaacc tttggaggac atttaccggc ctcgggttcg
     2101 tgtttgccat gtggatgatc gcggatcgag gcgttgagcg agcgcagcgt gttgatttcg
     2161 ctggcgcacg agacgaaggc gtggcgcaca tcgaagagat tgtcgccgag tacaaagaca
     2221 agattccgat gccggtgagc gaacttcgca aatacctgac cgagaacatc gtttttcgcg
     2281 tagataattc gatggaacgc gggttacagc tttactttga gctggccgct aaacaccaac
     2341 ttattgagtc agtgaaacca ctgcggtttg tttagcgttt ttgataagct acgggtgtca
     2401 tgacgaaggc aatggacata cagagaattt tggaccgcgt gctcgcgggc gaacgcatgt
     2461 ctctcgacga atgccggacc ctgctcgaat cgcacgacat cgcgcgcatg ggcgtcgccg
     2521 ccga
//
LOCUS       DASWTX010001272         1869 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_427907, whole genome shotgun sequence.
ACCESSION   DASWTX010001272 DASWTX010000000
VERSION     DASWTX010001272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427907"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..781)
                     /locus_tag="VGD38_19335"
     CDS             complement(<1..781)
                     /locus_tag="VGD38_19335"
                     /inference="COORDINATES: protein motif:HMM:NF017569.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0730247.1"
                     /translation="MSDLEVERLVVFCRELRADGVSVTPAEAVTAASALQVIDTNDRE
                     EVFLSLRSILTTSVDDFPIFAEVFRRFWNRKHSLNTSTAVRVKTSSPRQTSKGLGFFL
                     EHWGSSFSAAAQPIKVPGASDTESITTKDFSEFTHEELEEVSRLARRMVRRLARRPSR
                     RWRPVRRGHRVNLRRSLRLSLKTGGELIELTYKERRPKRTKLVVLCDVSGSMDIYSRL
                     LLQFVYGLQNSFAKVESFVFATSLARITGELKNKTYKSALDR"
     gene            complement(774..1643)
                     /locus_tag="VGD38_19340"
     CDS             complement(774..1643)
                     /locus_tag="VGD38_19340"
                     /inference="COORDINATES: protein motif:HMM:NF019348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEY0730248.1"
                     /translation="MRQIQLLLEQQVYVADAAIATALYLSMALGKPLLVEGPAGVGKT
                     EIAKALANALQTKLIRLQCYEGLDATTALYEWNYPKQLLHLKLEESSAASEAEKEAMI
                     FSESFLLKRPLLQAITQHDRAPVLLIDEIDRSDEEFEAFLLEVLSDFQVTIPEIGSIK
                     ATHRPHVVLTSNRSRDLSDALRRRCLYHWIDYPSLEKELEIVRAKVPGIDAGLAARVT
                     QIMQATRTMSLSKIPGVAETLDWANALVALQAPELNEQIVGQTVGCFLKDESDIATFK
                     AELPRICTDYTDV"
     gene            complement(1652..>1869)
                     /locus_tag="VGD38_19345"
     CDS             complement(1652..>1869)
                     /locus_tag="VGD38_19345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730249.1"
                     /translation="ALCSYEGRKGHPMIFARSMFPQLVDLHGDKAAWKLVDANAAVVQ
                     EVHFDFPYPDDINTPADFERLTTGRSS"
BASE COUNT          395 a          551 c          506 g          417 t
ORIGIN      
        1 gacgatcgag cgcactcttg taagttttgt ttttcaactc gcccgtgatg cgcgccaacg
       61 aagtcgcaaa cacaaacgat tctactttcg cgaaactgtt ttgcagcccg taaacaaatt
      121 gcagcaacaa acggctgtag atgtccatcg atcccgagac gtcgcaaagc acgacgagct
      181 tcgtgcgttt cggccgccgc tctttgtaag tcagttcgat cagttcaccg ccggtcttca
      241 acgacaaccg caacgagcga cgcaagttca cgcggtgacc gcgcctgacc ggacgccagc
      301 gccggctcgg ccgtcgcgct aaacgccgca ccatccggcg cgcaaggcgc gacacctctt
      361 ccagttcctc gtgcgtgaac tcgctgaaat ccttcgtggt gatcgactca gtgtcactcg
      421 cacccggaac cttaatgggt tgcgcggcgg cgctgaacga gctgccccag tgttcgagaa
      481 agaacccaag tcctttcgaa gtttggcgcg gcgaactggt tttaacgcgc acagcggtgc
      541 tcgtgtttag tgagtgcttt ctgttccaaa accttctgaa tacttccgcg aagattggga
      601 agtcgtcgac gctcgtcgtg agaatgctgc gcaagctgag aaagacctct tcgcgatcgt
      661 tcgtgtcgat cacttgcagc gctgacgcgg cggtcacggc ttcagccggc gtcacagaca
      721 ctccgtccgc cctcagttca cggcaaaaca cgacgagcct ttcaacttct aaatcagaca
      781 tccgtgtagt ccgtgcaaat ccgtggtaac tctgctttaa atgtagcgat gtcgctctcg
      841 tctttcagaa aacacccgac cgtctgcccc acgatctgct cgttcaactc aggcgcctgc
      901 aaagcgacga gcgcgttggc ccaatccagt gtctccgcaa cgccgggaat cttcgacagg
      961 ctcatcgttc tcgtcgcctg catgatctgc gtgacacgcg ccgccagacc cgcgtcgatg
     1021 cccggcacct tggcgcgaac gatctcgagc tccttttcca gcgacggata atcgatccag
     1081 tgatacaggc aacgccggcg caacgcgtcg gacaagtcgc gcgaacggtt tgaagttaat
     1141 actacgtgag ggcggtgagt cgctttaatg gatccgattt cagggatcgt gacttgaaag
     1201 tccgaaagca cttcgagcag aaacgcttca aactcttcat cactgcgatc gatctcgtcg
     1261 atcaacaaca cgggcgcgcg atcgtgttgc gtgatcgcct gtagcagcgg gcgtttcaac
     1321 aaaaacgatt cactgaagat catcgcttcc ttttccgctt ccgacgccgc ggacgattct
     1381 tcgagtttga gatgcagcaa ctgtttcggg tagttccatt cgtagagcgc cgtcgtcgca
     1441 tcgagacctt cgtaacactg aagccgaatc aattttgtct ggagcgcgtt tgcgagcgcc
     1501 ttcgcgattt cggttttgcc gacgcctgcg gggccttcga ccagcagcgg ctttccgagc
     1561 gccatcgaaa gatagagcgc ggtggcgatt gccgcgtcgg caacgtagac ctgttgttcc
     1621 agcagtagct ggatttgacg cacttcagtt ctcaacttga tcttcccgtt gtcaggcgtt
     1681 cgaagtccgc gggagtgttg atgtcgtcgg gataggggaa atcaaagtga acttcctgga
     1741 ccacagcggc attcgcgtcg actagcttcc acgcggcctt gtcaccgtgc agatcgacaa
     1801 gttggggaaa catagatcgc gcgaagatca tcggatggcc cttgcggcct tcatacgagc
     1861 agagtgcga
//
LOCUS       DASWTX010001273         3860 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_128349, whole genome shotgun sequence.
ACCESSION   DASWTX010001273 DASWTX010000000
VERSION     DASWTX010001273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3860
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128349"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1207
                     /locus_tag="VGD38_19350"
     CDS             <1..1207
                     /locus_tag="VGD38_19350"
                     /inference="COORDINATES: protein motif:HMM:NF014805.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HEY0730250.1"
                     /translation="LLKELGIPQPDNGMAASVEEASEIAARIGYPVLVRPSYVLGGRA
                     MAIVYDQEQLEKYVLTAVGFTPDRPVLIDKFLEQAAEFDVDALADETSCVIAGIQEHI
                     EEAGIHSGDSSCVLPPVRIDPEHLETMRHYTKKLARALSVRGLMNIQFAIKDHRVYVL
                     EVNPRASRTVPFVSKATGVPIARIAALVMAGKKLADFNLPEELTVQRFFIKSPVFPFA
                     KFPGVDPILSPEMHSTGEVMGIGDTFGEAYAKAMMGAGTSLPSVGKAFMSVNDADKGS
                     AVLLARKLSRLGFQIVATLGTAARLREVGLEVETVFKVNEGRPNIADYIKSGDISLVI
                     NTPLGRVSRFDEQAIRRAALQYNVPCVTTMTGAQALVEAIAASAKDTTPNVHSLQELH
                     AMHAVSSAK"
     gene            1224..1646
                     /locus_tag="VGD38_19355"
     CDS             1224..1646
                     /locus_tag="VGD38_19355"
                     /inference="COORDINATES: protein motif:HMM:NF024773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEY0730251.1"
                     /translation="MASLEINSAETISRILDECRTIAVVGLSSDTWRPSNSVSAYMRR
                     VGYRVIPVNPNETAVFGEKAYPDLASVPEKIELVDVFRRSDEAGKAVDEAIAVGAKAV
                     WLQEGVIDRAAAQRALDAGLLVVMDRCWLKEHMRYGRR"
     gene            1648..2136
                     /locus_tag="VGD38_19360"
     CDS             1648..2136
                     /locus_tag="VGD38_19360"
                     /inference="COORDINATES: protein motif:HMM:TIGR00177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MogA/MoaB family molybdenum cofactor
                     biosynthesis protein"
                     /protein_id="HEY0730252.1"
                     /translation="MSTPIRAAVITASDACSRGERADDSGAALVELLEGSGAEVVETR
                     ILSDDLAPLVQTLQEFSNRDDINLVLTTGGTGLGPRDNTPEATLQVIEREVPGIAEAM
                     RAESLKVTKMAMISRGVAGVASGTLIVNLPGSPKAVRESFAVIKPTLAHAVDLMAGWT
                     RH"
     gene            complement(2087..3052)
                     /locus_tag="VGD38_19365"
     CDS             complement(2087..3052)
                     /locus_tag="VGD38_19365"
                     /inference="COORDINATES: protein motif:HMM:NF014587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA phosphatase family protein"
                     /protein_id="HEY0730253.1"
                     /translation="MKLAAIDIGSNSLKLVVVQAENSDSFTVLAQEREVVRLGQETLV
                     NGHINTAATLRATTCLKRFVSVAEANGADKIVAIATATVREANNADEFIRTVEAETGL
                     RIGVLSGLEEARLIGLAASKGCTETGVTGLNIDIGGGSTEISIFRDGEPLALRSIKLG
                     AVGLTDRFIRSDPPAPNELDALRSEIHSLLKLPARELREHSWSHTTATSGTALAIGAA
                     LNLTAPGVASTVTLAALQRLNAKISTLTLAERKNVAGLTPQRADIIVAGGLVLEGVMT
                     TLGIESLRICDWSLREGVIIDRLRELERSVNAASSRPLDRQRELK"
     gene            complement(3049..3840)
                     /locus_tag="VGD38_19370"
     CDS             complement(3049..3840)
                     /locus_tag="VGD38_19370"
                     /inference="COORDINATES: protein motif:HMM:NF014299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730254.1"
                     /translation="MQVYGTPLPGVEREEYSGKLIVIEGTDGVGRSTHIALLRTWLES
                     RGHAVLDTGMTRSILAGRGIKEAKTGTTLGRLTMQLFYATDFIDRLENEMLPALRAGF
                     VVLTDRYIYSAIARAEVRGIDPAWIRKIYGMALVPDAVFYLRIRTAQQLVERLLSSGR
                     GFDYWESGMDLHLGNDLYDSFIEYQTRLLKVFDRLSGEYGFQVLNASRSVRSVGADLR
                     RAIAHILEEPAPPAEDNISNIRPLRGKAASAKPTNLVDLNKKALP"
BASE COUNT          793 a         1026 c         1229 g          812 t
ORIGIN      
        1 gttgctgaaa gagctgggaa ttccgcagcc ggacaatggc atggcggcgt cggttgagga
       61 agcgagtgag atcgcggcgc ggattggtta tccggtgctc gtgcggccga gttatgtgct
      121 cggcggacgc gcgatggcga ttgtttacga ccaggagcag ttggagaagt acgttctcac
      181 cgcagtgggt tttacacccg atcgtccggt tttgatcgat aagtttctcg agcaggcggc
      241 ggagtttgac gttgatgcgc ttgctgatga gacatcatgc gtgatcgcag gaatacagga
      301 gcacattgaa gaagctggta ttcactcggg cgactcgtca tgcgtgttgc cgccggtgcg
      361 gatcgatccc gaacacctgg aaacgatgcg tcactacacg aagaaactcg cgcgcgcgct
      421 gtcagtgcgc gggttgatga acattcagtt tgcaatcaag gaccatcgcg tttacgtgct
      481 cgaagtgaat ccgcgcgcgt cgcgcaccgt gccgtttgtt tcgaaagcga ctggcgttcc
      541 gatcgcgcgc atcgccgcgc tcgtaatggc cggaaagaaa ttggctgact tcaacttgcc
      601 ggaagaactg acggtgcaac gattcttcat taagtcgccg gtgtttccgt ttgcgaagtt
      661 tccgggagtg gatccgattc tgagtcccga gatgcactcg accggcgaag tgatgggcat
      721 cggcgacacg tttggcgagg cttacgcgaa agcgatgatg ggcgcgggca cgagtttgcc
      781 gtccgtaggc aaagcgttca tgagcgtgaa cgatgccgat aagggaagcg cggtgttgct
      841 cgcgcgcaag ttgagccgtt tgggatttca gatcgttgcg acgttgggaa cggcggcgcg
      901 gctgcgggag gtcgggctcg aggttgagac agttttcaaa gttaacgaag gccgcccgaa
      961 catcgccgat tacatcaaga gcggcgatat ttcgctggtc atcaacacgc cgctcggccg
     1021 tgtctcgcgt tttgacgaac aggcgattcg gcgcgcggcg ttgcaataca atgttccgtg
     1081 cgtgacgacg atgaccggcg cgcaggcgct cgtcgaagcg atcgccgcga gcgcgaagga
     1141 cacgacgccg aacgtgcatt cgcttcagga actgcacgcg atgcatgcgg tttcgtcggc
     1201 caaataaaca acgaacaaaa agggtggctt ccttggaaat caattccgca gaaacaatca
     1261 gccgtatcct cgacgagtgc cgcacgattg cggtagtggg actttcctca gacacgtggc
     1321 ggccgtcgaa tagtgtctcg gcctacatgc gccgcgttgg ttatcgtgtg attccagtca
     1381 atccaaacga gaccgcagtc tttggagaga aggcttatcc ggatctcgcg tcggtgcccg
     1441 agaagatcga gctcgtcgac gtgtttcgcc gttcggacga ggcggggaaa gcggttgacg
     1501 aagcgatcgc ggtgggtgcg aaagcggtgt ggttgcagga aggcgtgatc gatcgtgccg
     1561 cggcgcaacg cgcgcttgat gcggggttgc tggtggtgat ggatcgctgc tggttgaaag
     1621 agcacatgcg atacggcagg cgttgatatg agcacaccaa ttcgcgcggc ggtgattacg
     1681 gcgagtgatg cgtgttcgcg aggtgaacgg gccgatgatt cgggcgccgc gcttgtggaa
     1741 ctcttagagg gatcgggtgc tgaggttgta gagacaagga ttttatccga cgaccttgcg
     1801 ccactggttc aaacgctcca agagttctca aaccgcgacg atataaattt agttctgacc
     1861 actggtggta ccggacttgg gccacgggat aatacgccgg aagcgacgct tcaggtgatc
     1921 gagcgtgaag tgccggggat tgcggaagcg atgcgcgccg agtcgttgaa agtgacgaag
     1981 atggcgatga tctcgcgcgg ggttgcgggt gttgcttcag gaactctgat cgtgaatctt
     2041 ccgggatcgc cgaaagccgt gcgcgagagt ttcgcggtta ttaagcctac tttagctcac
     2101 gctgtcgatc taatggccgg ctggacgcgg cattgaccga tcgttccaac tcgcgcaagc
     2161 gatcgataat cacgccctca cgtaaagacc aatcacaaat acgaagcgac tcgataccga
     2221 gtgtcgtcat cactccttcc aacaccagac cgccggcaac aatgatgtct gcccgttgcg
     2281 gcgtgagtcc cgcgacattt ttacgctcgg caagagtcag agttgagatc tttgcattga
     2341 ggcgttgaag tgcggcgagg gtgacggtgc ttgcaacgcc aggcgccgtg agatttagcg
     2401 cggcgccgat tgccaaagca gtgccggaag tagcagtcgt gtgactccag ctatgttcgc
     2461 ggagttcgcg tgcgggaagc ttgagcaggg aatggatttc cgatcgcagg gcgtccagct
     2521 cgtttggcgc ggggggatca gagcggatga atcgatccgt gagaccgacg gcgcccagtt
     2581 tgatcgagcg cagcgcgagt ggttcgccgt cgcgaaagat cgagatctcg gtcgagccgc
     2641 cgccgatatc gatgttcagg cccgttacgc ctgtttcagt gcagcctttc gaagcagcca
     2701 aaccgatcag ccgcgcttct tcaagtccgg aaagaacccc gatccgcaag cctgtctctg
     2761 cttcaaccgt gcggatgaac tcgtcagcgt tattcgcttc acgcaccgtc gcggtcgcga
     2821 tcgcgacgat cttgtccgcg ccattggctt cggcaacgga gacaaaccgt ttcagacacg
     2881 tcgtcgcacg gagcgttgcg gcagtgttga tgtgaccgtt gacgagtgtc tcctggccca
     2941 gccgcacaac ctcgcgctcc tgcgcgagca cggtaaacga gtcgctgttt tcagcctgga
     3001 caacgacgag tttgagtgaa ttggaaccga tgtcgatcgc ggcgagcttc aagggagtgc
     3061 cttcttgttc aggtcaacga gattggtggg cttggcggac gcggctttac ctcgcagcgg
     3121 ccggatgttg ctgatgttgt cttccgccgg cggcgcgggt tcttcgagta tgtgtgcgat
     3181 cgcgcggcgc agatcggcgc cgacactgcg cacagatcgc gaagcattca aaacctgaaa
     3241 gccatactca ccgctcagcc gatcgaaaac tttcaacagc ctcgtttgat actcgataaa
     3301 actgtcgtac aaatcattgc ccaggtgcag gtccatgcct gattcccagt aatcgaaacc
     3361 gcgtcccgaa ctcagcaggc gttcgacgag ttgttgcgca gtgcggatac gaagatagaa
     3421 aacggcgtca ggcacgagcg ccatgccgta gatcttgcga atccacgcgg gatcgatgcc
     3481 gcgcacttca gcgcgcgcaa tcgcggagta aatataacga tccgtcagca cgacaaagcc
     3541 ggcgcgcaac gcgggcagca tctcgttttc gaggcgatcg ataaagtcgg tagcgtagaa
     3601 gagctgcatc gtgagccggc ccaacgtggt tcccgtcttg gcttccttga tgccgcgtcc
     3661 ggcgagaatc gatcgcgtca tgcctgtgtc cagcacggcg tgaccgcgcg actcgagcca
     3721 cgtgcgcaac agcgcgatgt gcgtcgagcg gccgacgccg tcagtgcctt cgatgacgat
     3781 cagcttgccg ctgtattctt cgcgttccac gccgggtaaa ggcgttccgt aaacttgcat
     3841 ccgttaattt gacctgctgt
//
LOCUS       DASWTX010001274         2290 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_236576, whole genome shotgun sequence.
ACCESSION   DASWTX010001274 DASWTX010000000
VERSION     DASWTX010001274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2290
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236576"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..767)
                     /locus_tag="VGD38_19375"
     CDS             complement(<1..767)
                     /locus_tag="VGD38_19375"
                     /inference="COORDINATES: protein motif:HMM:NF014069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEY0730255.1"
                     /translation="MEPSTQKLIHTFGALADLGQEIAGRGDFTEMVRTSMHLLLGTLA
                     LRRGAVAECVDEGELRCVAVWGVGEALFTNFSFTGVEKTDFLTRDTADFLVSTSTSST
                     AFVERYRERLVGEGIELILPMVVRDEVTGIVLLGRKASGEDFSSDDFETIRAMVRHIG
                     VGIHTHRLLEQVAQRAEENRRLYEELRTIYRATVRAFAAAIDIKDTYTQGHSERVGRY
                     SEIIARELGWSEEEVEGIQIAGYLHDIGKLVVDRDII"
     gene            complement(771..1151)
                     /locus_tag="VGD38_19380"
     CDS             complement(771..1151)
                     /locus_tag="VGD38_19380"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEY0730256.1"
                     /translation="MDKPNAPLVRSHCVGTTAVVYASDYLNKLTGEKIERECRRQLDC
                     GCRALVIDFSDTKLVNSIGISILLGIIDVAEKSGAKIVFSEVNNQTVQLFEMLGLTRH
                     VALAKDESEALLTLSGFETTPIVH"
     gene            complement(1170..>2290)
                     /locus_tag="VGD38_19385"
     CDS             complement(1170..>2290)
                     /locus_tag="VGD38_19385"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0730257.1"
                     /translation="GTGPQAWKDYLKIRYRLDVHGEPRALVVADALADALKRAPHTMA
                     RHYKQIARVSLRDLVSRFNTQRGPQVLFDYATFARKYKGLEPDRLASDLDAETEQFKL
                     PQTVHLASCVAFNSDMRQISEDERCLVAHTFEDGIYSDAQEVVWLVADLESKLEVDID
                     VARAWIERFESLAGRLGFSRFQIWLISNEGFTEDAGRLLSRRKALTSSRQQLELLAAR
                     ISETPVNPVVHSGEQANEFLVVVPMGEDNELIAASTAEQIAKRLTFRPEAINQIKTAI
                     VEACINASEHSFSPDRKIYQRFRLESDRLVVTISSRGVVPTNLNGASGHSDTTEAAEE
                     RRGWGLKLIRTLMDEVEFERVDDGTSLRMTKYVRDTAS"
BASE COUNT          469 a          664 c          640 g          517 t
ORIGIN      
        1 ttgatgatgt cgcggtccac gacgagcttg ccgatgtcgt gaagataacc cgcgatctga
       61 atgccttcga cctcttcttc actccaaccc aactcacgcg cgatgatctc actgtagcgt
      121 ccgacgcgtt ccgagtgtcc ctgcgtgtac gtgtccttga tatcgatcgc cgccgcaaag
      181 gcgcgcaccg tcgcgcgata gatcgtgcgc aactcttcgt agagccgtcg attctcttcc
      241 gcgcgttggg ccacctgctc gagcaaacga tgcgtgtgaa tgccgacgcc gatgtgccgg
      301 accatcgcgc gaatcgtttc gaagtcgtcg ctggaaaaat cttcaccgct cgctttcctg
      361 ccgagcagca caattccagt gacttcatca cgcacgacca tcggcaatat caactcaatc
      421 ccctctccca ccagccgttc gcgatagcgc tctacgaacg cggtcgaact cgtggaagtg
      481 cttacgagaa agtcagccgt gtcacgagta aggaagtctg ttttctcaac gccggtaaaa
      541 gagaagtttg tgaagagcgc ttcgccgacg ccccaaacag ccacgcagcg aagctcacct
      601 tcgtcgacac actcggccac cgcaccgcga cgcagcgcga gcgtaccaag caacaggtgc
      661 atcgacgttc gcaccatctc ggtgaaatcg cctcttccag ctatctcctg gcccaagtca
      721 gcaagtgcac cgaatgtgtg aatgagtttc tgggtcgaag gctccattaa tcagtgaact
      781 atgggagtag tctcgaaacc ggaaagcgtg agtaatgctt cgctttcatc ctttgccaat
      841 gcgacgtgcc gggtgagccc gagcatctcg aagagttgga ccgtctggtt gttgacttcg
      901 gagaagacga tcttagcgcc gctcttttca gcgacgtcaa tgatgccgag gaggatcgag
      961 atgccgatac tgttgactag ttttgtgtcg ctaaaatcga tcaccagcgc gcggcaacca
     1021 cagtcgagtt gccggcgaca ctcgcgttcg atcttttcac cggtcagttt gtttaaataa
     1081 tcgctggcat aaacaacagc cgtggtacca acgcagtgcg accgtaccaa aggggcgttt
     1141 ggtttatcca tgtcgtctca agttgtgttt caggaagcgg tatcgcgaac gtattttgtc
     1201 atgcgcaagc tggtgccgtc gtcgactcgt tcaaactcga cttcgtccat caacgtgcga
     1261 atgagtttaa ggccccatcc acgtctttct tctgccgctt cggttgtgtc tgaatggccg
     1321 ctcgcgccgt taagattggt tggcacgacg ccacgactcg aaatagtgac gactaatcta
     1381 tcactttcga ggcgaaaacg ttgataaatt tttcggtcgg ggctgaaact gtgctccgag
     1441 gcgttgatgc aggcctcgac gatggcggtc tttatctggt tgatggcctc gggccggaag
     1501 gtcaaacgct tcgcgatctg ttcggccgtg ctggccgcga tcagctcgtt gtcctcgccc
     1561 ataggcacca cgacgagaaa ctcgttggcc tgctctccac tgtggacaac gggattcacg
     1621 ggcgtttcac tgatccgcgc ggccaggagc tctaactgct gccggctcga cgttaaagcc
     1681 ttgcggcgag acaacaaccg gcccgcatct tccgtaaagc cttcgttcga aattaaccag
     1741 atctgaaaac ggctgaaacc caacctgccg gccaggctct cgaagcgctc gatccacgcg
     1801 cgggccacat cgatgtcgac ttccagcttc gactcgagat cggcgactaa ccaaaccact
     1861 tcctgcgcgt cggagtagat tccatcttcg aacgtgtgcg ctacgagaca gcgttcgtct
     1921 tcggagatct gccgcatgtc gctgttgaag gcgacacagc tcgcgagatg tacggtctgc
     1981 ggcagtttga actgttcggt ttcggcgtcg aggtctgaag cgaggcggtc cggttcgagg
     2041 cctttgtact tccgcgcgaa cgtggcgtag tcgaaaagaa cttgaggacc tcgctgcgtg
     2101 ttgaagcgcg agacgagatc gcgcaggctg acgcgcgcga tctgcttgta atgacgcgcc
     2161 atcgtgtggg gcgcgcgttt gagtgcatcg gcgagcgcgt cggcaacgac gagcgcgcgt
     2221 ggttcaccgt gaacgtcgag ccggtagcgg atcttcaggt agtctttcca cgcttgtggt
     2281 ccggtgcccg
//
LOCUS       DASWTX010001275         2289 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_128389, whole genome shotgun sequence.
ACCESSION   DASWTX010001275 DASWTX010000000
VERSION     DASWTX010001275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2289)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2289)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2289
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128389"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(189..1658)
                     /locus_tag="VGD38_19390"
     CDS             complement(189..1658)
                     /locus_tag="VGD38_19390"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0730258.1"
                     /translation="MKRPVASFFLVLSLFASAAFPQTREPGAKKQSERSPSRSNTLKI
                     CQGVALPDGYVIVGYVSSALCPHGAYLLKKQELPAQRQEPAPRANTASGSRAEPAVSQ
                     TTTRSRPRRVGTDGEVAAAPSMAQARPPVLSNAGSIAVPVGASAGTTPTTEAAAASDV
                     EEVSEGDVVRIDTAFVTVPVSVLDRQGRFVPDLIKKDFRVFENGVEQPIAFFEPTEKP
                     FTVALLLDTSASTRFRLWEIKEAAIAFAKQLRPQDRVLVVTFSDEVLLLTEATNDLNV
                     VSTVIDFNTNPGSSTRLYDAVNLVVNERLNKIQGRKAIVLFTDGVDTSSYIATYESTL
                     REAEELDALIYPIQYDTTDYMRAMQGAGSVTVTTTVNNGPFGGSSSSRQVYGVPNNGQ
                     PLPGARKEDYDRANEYLIAMAERTGGRLHKANDMSQLAQAFSSIAEELRRQYSIGYYP
                     QNGTDQDARRQIKVSVDRSNVAVRARNSYLRRSGTNVGP"
     gene            complement(1742..>2289)
                     /locus_tag="VGD38_19395"
     CDS             complement(1742..>2289)
                     /locus_tag="VGD38_19395"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY0730259.1"
                     /translation="FMAGCHKWLFGPRGTGIIWGNDRAWSSVSPIIPTFVDDASRDAW
                     LRDDEPPARMTAKRMTPGGFKTFEHQWAMADAFRFHLGLGKAKIAGRTHELNRQLKEG
                     LAGMSHVKLYTPRTDELSAGIVCFDVNGMSAREVVAKLGDRKIIATTTPYAQSHARVS
                     PSIRNSPPEIEAALSAIRELA"
BASE COUNT          444 a          691 c          670 g          484 t
ORIGIN      
        1 aacggcggta aatttactta gcagtctcat gtcacagagc aaagctttat caatagagca
       61 aacgcaggcg ccgcggcgtc gcggtcagcg tgtgcctaaa attctcttga caccggagac
      121 cgcttcatag atgggctgaa actggccaac gccttcggcg ttattaggca gaaacgttgc
      181 ggtccaacct acggaccaac gtttgtgccg ctgcggcgca ggtagctgtt tcgggcgcgg
      241 acggcgacgt tcgaacggtc gacgctgact ttgatttggc gacgcgcgtc ttgatcggtg
      301 ccgttttgcg gatagtagcc gatgctgtat tggcggcgaa gctcttccgc gatgctcgag
      361 aaggcctgcg cgagctggga catgtcgttg gctttgtgaa ggcgtccgcc ggttcgctcg
      421 gccatcgcga tcaggtactc attcgcgcgg tcgtaatctt ctttcctcgc gccgggtagc
      481 ggttgaccgt tgttcggaac gccataaacc tgccgcgacg aactgctccc gccaaacggc
      541 ccgttgttaa cagtcgtcgt caccgtcaca ctgccggcgc cctgcatcgc gcgcatgtaa
      601 tccgtcgtgt cgtactgaat cggatagatg agcgcgtcca actcctccgc ctcgcgcagc
      661 gtgctctcgt aagtggcgat gtaactcgac gtatccacgc catccgtgaa aagcacgatc
      721 gctttgcggc cctgaatctt gttcagacgt tcgttgacca caagattcac cgcatcgtaa
      781 agacgcgtcg agctgcccgg attcgtattg aagtcgatca cagtgctgac gacgttgaga
      841 tcgttcgtcg cttcagtgag caacaacact tcatcgctga acgtcacgac cagcacgcga
      901 tcctgcggcc gcagttgctt cgcaaacgcg atcgccgctt ctttgatctc ccacaagcga
      961 aaacgagtcg aagctgaagt gtccaacagc aacgcgactg tgaacggctt ttcagtcggt
     1021 tcgaaaaacg cgatcggctg ttcgacgccg ttctcgaaca cgcgaaagtc cttcttgatg
     1081 aggtccggaa cgaaccgtcc ctgacggtcc agcacactca ccggaacagt gacgaaagcg
     1141 gtgtcgattc gcacgacgtc gccttccgag acttcttcaa catcggaagc cgccgccgct
     1201 tcagtcgtcg gcgtagttcc cgcgctcgca cccacgggaa cagcgatcga tccggcattc
     1261 gaaagcacgg gcggacgcgc ctgggccatg ctcggcgccg cagcaacttc accgtccgtc
     1321 cctaccctgc gcgggcgcga ccgcgtcgtg gtttgcgaca cagccggttc agcacgactg
     1381 ccagacgcag tgttcgcacg cggcgccggt tcctgtcttt gcgcaggcaa ctcctgtttt
     1441 ttcaacagat aagccccatg cggacagagc gccgacgata cgtaaccaac gatcacgtac
     1501 ccatcaggca gcgcgacgcc ctgacagatc ttgagtgtgt tgctccgtga cggcgagcgt
     1561 tcggattgtt tcttagcccc cggctccctg gtttgaggga aagcagccga ggcaaacagc
     1621 gaaagcacga gaaagaaaga ggcgaccgga cgtttcatac tggcgtacct ctccgatttg
     1681 ctgttaagtc aagttttcga gtggcgggat tataagcccg ttggccccat tagcctagcg
     1741 ctcaggcaag ctcccggatg gcgctcaggg ccgcttcgat ttccggcggt gagttgcgga
     1801 tgctggggct tacgcgggcg tgtgactggg cgtacggcgt ggtcgtcgcg atgatttttc
     1861 ggtcgccgag tttcgcgacg acttctcgcg ccgacatgcc gttcacgtcg aaacagacga
     1921 tccccgcgga aagctcgtcg gttcgcggcg tgtagagctt gacgtgcgac atgcccgcga
     1981 gtccttcctt gagctggcgg tttagttcgt gagtccggcc ggcaatcttc gccttaccga
     2041 ggccgagatg aaatcggaac gcatcggcca tggcccactg atgttcgaaa gtcttgaaac
     2101 cgccgggcgt catgcgtttg gccgtcatgc gcgcaggcgg ttcgtcgtct cgcagccacg
     2161 catctcgcga cgcgtcgtct acgaacgtcg gaatgatcgg gctcaccgag gaccatgctc
     2221 tatcgtttcc ccagatgatg ccggtgccgc gtggtccaaa cagccacttg tgacaaccgg
     2281 ccatgaaga
//
LOCUS       DASWTX010001276         1551 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_427955, whole genome shotgun sequence.
ACCESSION   DASWTX010001276 DASWTX010000000
VERSION     DASWTX010001276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1551
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427955"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..290)
                     /locus_tag="VGD38_19400"
     CDS             complement(<1..290)
                     /locus_tag="VGD38_19400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730260.1"
                     /translation="MKRVLLLVLSAFAFGNIVHAQHGDHRHDASELGRVNFAISCTPQ
                     AQKKFNRAVAWLHSFEYEEAEKAFTEVAATDPRCGMAHWGVAMSNYHPLWAPP"
     gene            complement(333..1478)
                     /locus_tag="VGD38_19405"
     CDS             complement(333..1478)
                     /locus_tag="VGD38_19405"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HEY0730261.1"
                     /translation="MPPSKKNVTLSQLRVGIFVLIAIGVLVFLVLNASGDINPFSRKL
                     HLKARFVDANGLREGSEVRLAGVRVGKVEEIVLLEPSTVPNAPRVEARMTIDSNIDGQ
                     PANQRIRSDSTAQQGSPSLLGNEMLINITPGTSLGQPVQDGAILPSSSSNTVNDFATS
                     GTDLAQRLSKLSDELSSMVQSVKKGEGTVGRLFSDEALYNNLNATVREVQDVMTEIRS
                     GRGSAGRFINDPALYNNANEIAIQLKALTDDLRAGRGTAGKLLTDDEFYVRINRTADR
                     LDKSVDQINLMVADINAGRGTLGKLIRDDQIYYDARAAIARFNTTAERIDNMVAAAQR
                     GEGTVGKLLNDETLYTNVNQLSSEGVKMLYDFRQNPKKYLTIKFELF"
BASE COUNT          303 a          432 c          454 g          362 t
ORIGIN      
        1 ggcggcgccc agagcggatg atagttgctc atcgcgacgc cccagtgcgc catgccacaa
       61 cgcggatcgg tcgccgcgac ttccgtgaat gccttctcgg cttcttcgta ttcgaacgaa
      121 tgcagccagg cgacggcacg gttgaacttc ttttgcgctt gcggcgtgca cgagatggcg
      181 aagttcacac gcccgagctc agacgcgtcg tggcggtgat ctccgtgttg tgcgtgaact
      241 atgtttccaa aagcaaaagc ggagaggacg agcaggagga cgcgtttcaa ggaagttgtc
      301 ctttccgggg gaggtaggtt gtgggtgtcg aactaaaaca gttcgaactt aatcgtcaga
      361 tacttcttcg ggttttgccg gaagtcgtaa agcattttga cgccttcgga agacaattga
      421 tttacgttcg tgtagagcgt ctcgtcgttc aacagcttgc cgacggtgcc ttcgccgcgt
      481 tgggcggcgg cgaccatgtt gtcgatgcgt tcggcagtgg tgttgaagcg cgcgatagcg
      541 gcccgggcgt cgtaataaat ctggtcgtcg cggatcagtt tgccaagcgt tccgcggccg
      601 gcgttgatgt ccgcaaccat caggttgatc tgatcgactg atttgtcgag tcgatcggcg
      661 gtgcggttga tgcgcacgta aaactcgtcg tcagtcagga gcttgccggc ggtgccgcgg
      721 cccgcgcgca gatcatcagt cagcgctttc aactgaatcg cgatctcgtt ggcgttattg
      781 taaagcgcgg gatcgttgat gaaccttcct gccgaacctc tgcctgaacg gatctccgtc
      841 atcacgtcct gaacttcacg aaccgtggcg ttgaggttgt tgtacagagc ctcgtcgcta
      901 aagagccgtc cgactgtccc ttcacctttc ttgacgctct gcaccatgct gctgagctcg
      961 tctgacaatt tgctgagacg ctgtgcgaga tctgtaccgg aagtcgcgaa gtcgttaacc
     1021 gtatttgacg acgacgacgg cagaatcgcg ccgtcctgca cgggctgacc cagcgacgtg
     1081 cccggcgtga tgttgatcag catctcgttt ccgagcagac tcggcgagcc ttgctgcgca
     1141 gttgaatcag aacgaatgcg ctggtttgcg ggttggccgt cgatgttcga gtcgatcgtc
     1201 atccgggctt cgacccgtgg cgcgttcgga actgtcgacg gttccaggag aacgatttcc
     1261 tctaccttgc ccacgcgcac acccgccagg cgcacttcag aaccctcacg caatccattc
     1321 gcgtcgacaa accgcgcttt caaatgcagt tttcgactga acggattgat gtcgccggaa
     1381 gcgttgagca ccagaaaaac caacacgccg atcgcaatca gcacgaagat tcccacgcgc
     1441 aactggctca gggttacatt tttctttgat ggaggcatag cgtcctttcc ttagtgtccc
     1501 cggaggaatc tttgaatata agggtcctcc gcgcggcgca acgattcatc a
//
LOCUS       DASWTX010001277         1523 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_15458, whole genome shotgun sequence.
ACCESSION   DASWTX010001277 DASWTX010000000
VERSION     DASWTX010001277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15458"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..819
                     /locus_tag="VGD38_19410"
     CDS             <1..819
                     /locus_tag="VGD38_19410"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY0730262.1"
                     /translation="TLRQRERREGLVLKMVKIPIPPKNLNEITAAFEKGITNRTKLIL
                     MSHQVNITGQITPVKAVCDLARAKGIETIVDGAHSFAQFDFKQKDLGCDYFGTSLHKW
                     LYAPKGSGLLYVKRDKIEKLWPLMAAESKQSNDIRKFEEVGTHSAAPRLAIGEAMLFH
                     NGIGGKRKEARLRYLSRYWMNRLKDVPKVRFNTSFDPAQSCAIANVEIVGIDPTAIGS
                     YLFNKHRIFTTPIVHEEFKGIRITPNVYTTLGELDRFCNVMEQIARKGLPAQSA"
     gene            894..1163
                     /locus_tag="VGD38_19415"
     CDS             894..1163
                     /locus_tag="VGD38_19415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730263.1"
                     /translation="MQEARNCVNDVAEAVCDGLRQIGDFSYAILPRDLAHALGDVKKA
                     VLSTVRSAVDWEIEWIDDRVAGGDRLRDEWREKCRRADEPQAGGV"
     gene            1188..>1523
                     /locus_tag="VGD38_19420"
     CDS             1188..>1523
                     /locus_tag="VGD38_19420"
                     /inference="COORDINATES: protein motif:HMM:NF014456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HEY0730264.1"
                     /translation="MEVLLADEYGFCFGVERAVEMVEEVVEEGARPIRSLGPLIHNAQ
                     EMERLSARGVSTIDSPEEAGADTIAVIRAHGVTPQVQRDLEGRAAKVIDATCPFVTRV
                     QHLAERAASQ"
BASE COUNT          348 a          430 c          469 g          276 t
ORIGIN      
        1 actctgcgcc agcgcgaacg ccgcgaaggt ctcgtgctga agatggtgaa gatcccgatc
       61 ccgccaaaaa acctcaacga gatcacggcc gctttcgaga aaggaatcac gaaccgcaca
      121 aaactgatcc tgatgtctca ccaggtaaac atcacgggcc agatcacgcc cgtgaaagcc
      181 gtttgcgacc tcgcgcgcgc aaagggaatc gagaccatcg tcgacggcgc gcattcgttt
      241 gcccagtttg acttcaaaca gaaagatctc ggctgcgact acttcggcac cagcctgcac
      301 aagtggctct acgcgccgaa aggcagcggt ttgctgtacg tcaaacgcga caagatcgag
      361 aagctgtggc cgttgatggc cgccgagtcg aaacagtcaa acgacattcg caagtttgaa
      421 gaggtcggca cgcactccgc ggcgcctcgt ctcgcgattg gcgaagcgat gctgtttcac
      481 aacgggatcg gcggcaagcg aaaggaagcg cggctgcggt atctgtcgcg ctactggatg
      541 aaccgtttga aagacgtgcc gaaggttcgt ttcaacacgt cgttcgatcc ggcgcagtcg
      601 tgcgcgattg cgaatgtcga gatcgtgggc atcgatccga cggcgatcgg cagttacctc
      661 ttcaacaagc accgcatctt caccacgccg atcgtgcacg aggagttcaa aggcatccgc
      721 atcacgccca acgtctacac cactctcggc gagctcgacc gcttctgcaa cgtgatggag
      781 cagatcgcgc gaaagggact tccagcccaa tctgcgtaat ctgtggctga acttacgcct
      841 ccgtgcgacc gtaaagcaga tggtgctaga atccttcccg gaggctgaga tttatgcagg
      901 aagcccgaaa ttgtgtgaat gacgtagcgg aagcggtttg cgacggtttg cgccagattg
      961 gcgacttttc ctacgcgatt ctcccgcgag acctggcgca cgcgctcggc gacgtgaaga
     1021 aagcggtgct ctcgacggtt cgcagcgcag tcgattggga gatcgagtgg atcgacgacc
     1081 gcgtcgccgg cggcgaccgg ctgagagacg aatggcggga aaagtgcaga cgcgctgacg
     1141 aacctcaggc aggcggcgtc taattcggag agtcgaaaag atcacttatg gaagtcttac
     1201 tcgcagacga atacggattt tgtttcggcg tcgaacgcgc ggttgagatg gtggaagaag
     1261 tggtggaaga aggcgcgcgg ccgattcgct cgcttggtcc actgattcac aacgcgcagg
     1321 agatggagcg actcagcgcg cgcggtgttt cgacgatcga ttcacccgaa gaagccgggg
     1381 ccgacacgat tgcggtgatt cgcgcgcacg gtgtcacgcc gcaggtgcaa cgcgatctcg
     1441 aaggacgtgc cgcaaaagtg atcgacgcga cgtgcccgtt tgtaacgcgc gtacagcatc
     1501 tcgccgagcg agccgcgagc cag
//
LOCUS       DASWTX010001278         7271 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_278667, whole genome shotgun sequence.
ACCESSION   DASWTX010001278 DASWTX010000000
VERSION     DASWTX010001278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7271
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278667"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..606
                     /locus_tag="VGD38_19425"
     CDS             <1..606
                     /locus_tag="VGD38_19425"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY0730265.1"
                     /translation="AYPKFTPTPFKEDDIWNGYPEETNAPYGLAKKMMLVQSQSYREQ
                     YGFNSIFLLPANLYGPGDTFDLETSHVIPALIRKCVEARERGDAFIEAWGSGQVSREF
                     LYVEDCAEGIVRASAVYNESDPVNLGSGNEVVIKDLVETIARLTGYEGEIRWRSDRPD
                     GQPRRQLDTSRAREKFGFSAATSLEEGLKQTIAWYEQNQFK"
     gene            complement(599..1426)
                     /locus_tag="VGD38_19430"
     CDS             complement(599..1426)
                     /locus_tag="VGD38_19430"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0730266.1"
                     /translation="MMNTEPLVVIQPSQSWRLLSLKDLWAYRELLFFLTWRDVKVRYK
                     QTALGAAWAILQPLFMMVIFTIFFGRLAGIESAGIPYPLFALAGLVPWTFFSNAITQS
                     GNSLVGSSHLITKVYFPRLIVPAAAMLAGLVDFALAFVLFVVMMIYYSVAPTTHLLFL
                     PVLILLTALFALGVGTWFAALNVKYRDVRFALPFLIQIWLFVSSVILPSSALPQKYRL
                     LLMLNPMSGIIEGYRSALFGLPFDWPAIGAAAAITVAVLGYAIYSFARVERSFADII"
     gene            complement(1426..2238)
                     /locus_tag="VGD38_19435"
     CDS             complement(1426..2238)
                     /locus_tag="VGD38_19435"
                     /inference="COORDINATES: protein motif:HMM:NF013087.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY0730267.1"
                     /translation="MTVVRRIINSINYRVLAPLTNRDARNWASKTDFRKAHRRLLQQL
                     RSTYTNDEAVRRAVGGEFDAVGLLERQALIHHGLKETDYLIDVGCGSGRLAKPLSEYL
                     TGKYLGIDVVPGLVDYARKLVPRPDFRFEVAEGLKIPEQDRQADMICFFSVLTHLLHE
                     ESFVYLREAKRVLRPGGKIVASFLDFRVNSHWKYFENNVGDIGVGSQPMNVFMCPDMF
                     REWAKRLDLEIEAIHDGDEPYLPLPQPIILENGAVLQNPAAFGQSVCVMVRR"
     gene            complement(2241..3491)
                     /locus_tag="VGD38_19440"
     CDS             complement(2241..3491)
                     /locus_tag="VGD38_19440"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY0730268.1"
                     /translation="MKRVLSSLVPLSVRAAVHDRRNRARLERLLDTKNRFRAARSRKQ
                     TADVPAGVNLVGYIRANMGLGTAARGLAAACDAVEIPFGVINLEHGNYGTHTDGSWSH
                     KEVADSRYDTTVVCVNPDNSFYLRTQVSPEILGNRYVIAHWYWELPEMPDDWLKEFEY
                     VDEVWAPSNFIKDAIAKKTTAPVVRVPTVVDLKRTTKFSRAQLGLPEHRFLFLAMFDT
                     RSVLERKNPLGVLHAFKSAFNADDNSVGLVLKFNNPDYDQPVMRELQAELANQQNVFV
                     IDRLLTRDELTSLVDACDCYISLHRSEGFGLGPAEAMSLGKPAIITNWSGNVDYMTAD
                     NCIAIDYKLVKLDRDYGPYKAGQHWAEPDLDQAAHWMKRLVAEPELAREIGSRGQQTI
                     GAEFSPQAVGRIIQARLQEIRGTH"
     gene            complement(3571..4605)
                     /locus_tag="VGD38_19445"
     CDS             complement(3571..4605)
                     /locus_tag="VGD38_19445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730269.1"
                     /translation="MPAHWDWAVHEALRTYSASHFLYLTDRMMFRKGGLRDVVGLAAR
                     YPDKVISYNADRIVDNSTPIRVEQYPASERLLAVDTLRISWLLSQAIIHPAVPRMLNS
                     IVPRTVLDRVQQRFGNIFASVSPDFNFCCRCLELEESSRYYDKAPLFHYALSRSNGAS
                     ATRGQMTTDYADFMAKLQGDNTNWATPIPGLNTAVNYALHEYCVFKQETGSEKFFELD
                     MQKYLQANVNESREVVDPQLRAETFSLLAANGYVEAKTNGRQQSAAAASFSKRLQAKL
                     KRSFTGAATTSAWLFLARTVAITPPGLNSFEFATLDEAIDYARNISRGNVNKGRADEE
                     LLQARELPKQ"
     gene            complement(4606..4818)
                     /locus_tag="VGD38_19450"
     CDS             complement(4606..4818)
                     /locus_tag="VGD38_19450"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0730270.1"
                     /translation="MAYTGTVVVIPTRNRAAIAMNAIRSVLDEAVEDVEVLVSDNSTS
                     EAERDALAKFCGGLEGLRYVRPPESL"
     gene            complement(4821..5630)
                     /locus_tag="VGD38_19455"
     CDS             complement(4821..5630)
                     /locus_tag="VGD38_19455"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY0730271.1"
                     /translation="MMLGVALRKIQDQIWLARFGRHASLVPPVELMHDGPQSYKEFKQ
                     NGEEFLRYYIELCGLRPDEKILDVGSGIGRKTLPLVDYLNERGSYEGLELVKSAVEWC
                     TEKYTSKYPNFRFQHIDVFNAHYNPEGKYRASEYRFPFGDDEFDLVVLNSVFTHMLPA
                     EVENYLCEVARVLKPGGRCLISFFLLNDESIGLLDQNKSMIVLPHAQPPVRMQSREKP
                     EEAIGFELDHVLALYEHCGLGIKQPIRYGYWCGRSEYLSCQDLIVAFKKAV"
     gene            complement(5627..6391)
                     /locus_tag="VGD38_19460"
     CDS             complement(5627..6391)
                     /locus_tag="VGD38_19460"
                     /inference="COORDINATES: protein motif:HMM:NF016850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CmcI family methyltransferase"
                     /protein_id="HEY0730272.1"
                     /translation="MISINIEQGTISVDENGATREYKLDTPEAFRIISDVWLRAGWDT
                     KYVYSFTWLGRPMIQLPEDMIRIQEVIHTVQPDVIVETGVAHGGSLVFYASLCKAMDR
                     GRVIGVDVEIRPHNRAAIEAHALFPLITLIEGSSIEPRIVEEVKSLIKPGEKTMVVLD
                     SNHEKQHVLAELRAYSPIVSVGSYIVAMDGIMERLVGAPRSAPDWSWNNPRQAALEFV
                     AENDDFVIEEPQFAFNEGKITERVTYWPSAFIKRVK"
     gene            complement(6378..7169)
                     /locus_tag="VGD38_19465"
     CDS             complement(6378..7169)
                     /locus_tag="VGD38_19465"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY0730273.1"
                     /translation="MITILGASGFIGSHLATRLQQYKLEFQAVKRNESVPAGNLGNVI
                     YCIGVTADFRSKPFETVDAHVCTLLDFVRRHEFDSLLYLSSTRLYAGSDSTAEDEALR
                     GANDLYNLSKLMGESIALNCGRTGRVARIANVYGRDFKSDNFLPSILRQAATGAKIVF
                     ETAPESEKDYVWVHEVVENLIWIAAQGKQQIYNVASGVNVSNAQLAAKLQQLTGCEIE
                     FAPGAPAIKYPRINIGRVRGEFGIVPSSVLDDLEWLLQSYKNDQH"
BASE COUNT         1571 a         2121 c         2029 g         1550 t
ORIGIN      
        1 gcgtatccga agttcacgcc cacgcctttt aaagaagacg acatctggaa cggttatccg
       61 gaagagacga acgccccgta cgggcttgcg aagaagatga tgctggtaca gtcgcagtcg
      121 tatcgcgagc agtatgggtt caactcgatc ttcctgttgc cggcgaacct ttatggaccg
      181 ggcgacactt tcgatctcga gacgtcgcac gtgattccgg cgttgattcg caagtgcgtt
      241 gaggcgcgtg agaggggcga cgcgtttatc gaagcgtggg gctcgggcca ggtgtcgcgc
      301 gagtttcttt acgttgagga ttgtgcggaa gggatcgtgc gcgcgagtgc cgtttacaac
      361 gaatccgatc cggtgaatct gggttcgggt aatgaggttg tgattaaaga cttggtcgag
      421 acgatcgcgc ggttgacggg ttacgagggc gagattcgtt ggcgttcgga ccgtccggat
      481 ggacagccgc gacggcagct cgacacgagc cgcgcgcgcg agaagttcgg gtttagtgcc
      541 gcgacctctt tagaagaggg attaaaacag accattgcgt ggtacgaaca gaatcaattt
      601 aaataatatc ggcgaagctc cgctcgacgc gcgcgaatga atagatcgcg tagccaagca
      661 cggcgaccgt gatcgcggcg gcggcgccga tcgcgggcca gtcgaatgga agtccgaaga
      721 gcgcggaacg atagccctcg atgattcccg acatcggatt cagcatcaac aacaaacgat
      781 acttctgcgg caacgcgctt gacggcagga tcaccgacga cacaaacaac cagatctgaa
      841 tcagaaacgg caacgcaaac ctcacgtcgc gatacttcac attcaacgcg gcgaaccacg
      901 ttcccacgcc gagcgcaaac aacgccgtca gcaagatgag caccggtaga aacagcaggt
      961 gcgtcgtcgg cgcgacgctg taatagatca tcatcacgac gaacaacacg aacgcgagcg
     1021 cgaagtccac gagccccgcg agcatcgccg ctgcgggaac gatgagccgc ggaaagtaaa
     1081 ctttcgtgat caggtgcgag ctgccgacga gactgttgcc gctctgcgtg atcgcgttcg
     1141 agaagaacgt ccacggcacg agaccggcga gtgcaaacaa cggatacgga atgccggcgg
     1201 attcgatgcc tgcgagacgc ccgaagaaaa tcgtgaagat gaccatcatg aacaacggtt
     1261 gcaggatggc ccacgcggcg ccgagcgccg tctgtttgta gcgcaccttc acgtcgcgcc
     1321 acgtcaggaa gaaaagcagt tcgcgatatg cccagagatc tttgagacta agcagtctcc
     1381 agctttggct cggttgaatg acaaccagcg gctcagtgtt catcattatc ttcgtaccat
     1441 cacgcacacg gattgtccaa acgcggcggg gttttgcaag accgcgccgt tctcaagaat
     1501 gatcggctgc ggcagcggca ggtagggttc gtcgccgtcg tgaatcgctt cgatttccag
     1561 gtccaaacgt ttggcccact cgcgaaacat gtcgggacac ataaagacgt tcatcggttg
     1621 ggacccgacg ccgatatcgc ccacgttgtt ctcgaaatac ttccagtggc tgttcacgcg
     1681 aaaatcgaga aacgacgcca cgatcttacc gccgggccgc aagacccgct tcgcctcgcg
     1741 caggtaaaca aacgattctt catgcagcag gtgcgtcaat accgagaaga agcaaatcat
     1801 atcggcttgt cgatcctgtt ccgggatctt gagtccttcc gcgacttcga aacggaaatc
     1861 cgggcgcggc acgagcttcc gcgcatagtc gaccagtccc ggcacgacgt cgatgcccag
     1921 atactttccc gttagatatt cggagagtgg tttcgcgagc cggcccgatc cgcagccgac
     1981 gtcgatcaga taatccgttt cttttaaccc gtgatgaatc agcgcttgtc tctccagaag
     2041 gcccacggcg tcgaactcgc caccgactgc gcggcgcacc gcttcatcat tcgtgtaggt
     2101 gctgcggagc tgttgtaaca gccgccggtg cgctttgcga aagtcggtct tcgacgccca
     2161 gttgcgcgca tcgcggtttg tcagcggcgc aagcacgcga tagttgatgc tgttgatgat
     2221 tcggcggacg acggtcactt tcagtgcgtt cctctgattt cttggaggcg agcttgaatt
     2281 atcctgccga ccgcctgtgg tgaaaactcg gcgccgatcg tttgctggcc gcgcgaaccg
     2341 atctcacgcg cgagctcggg ttcggcgacg aggcgtttca tccagtgcgc ggcttgatcg
     2401 agatcgggtt cagcccagtg ctgaccggct ttgtacggac cataatctcg atcgagtttg
     2461 accagtttgt aatcgatggc gatgcagttg tcagcagtca tgtagtcgac gttgccggac
     2521 cagttcgtaa tgatagccgg tttgcccagg ctcatcgcct ctgctgggcc gaggccgaag
     2581 ccttctgagc ggtgcaacga aatgtagcaa tcacatgcgt cgacgagcga agtcagttcg
     2641 tcacgtgtta acaggcgatc gatcacgaac acgttttgtt ggtttgcgag ctcggcttga
     2701 agctcgcgca tcaccggttg atcgtaatcg ggattattaa acttcagcac caatccgaca
     2761 ctgttgtcgt cagcgttgaa tgcgctcttg aaagcatgca acacacccaa agggttcttt
     2821 cgttccaaaa cgctgcgcgt gtcgaacatc gcgagaaaca ggaagcgatg ttcgggcaga
     2881 ccgagctgag cgcgtgaaaa ttttgtcgtg cgtttcaagt ccacaaccgt cggcacgcgc
     2941 acgacggggg ccgttgtttt cttcgcgatc gcgtccttga tgaagtttga aggcgcccac
     3001 acttcatcga catactcaaa ttctttcaac cagtcgtcag gcatctccgg cagttcccaa
     3061 taccagtgcg cgatcacgta gcggttgccg agtatctcag gcgatacctg cgtgcgaaga
     3121 taaaaactgt tatcggggtt cacgcaaacc acagtggtgt cgtaacgcga atccgcgacc
     3181 tccttgtgcg accacgaccc atcggtgtgc gttccgtagt taccgtgctc caggttgatc
     3241 acgccgaacg gaatctcgac ggcgtcgcag gcggcggcga gtccgcgagc ggcggtgccg
     3301 agtcccatgt tggcgcgaat gtaaccgacg agattgacgc ccgcgggaac gtctgccgtt
     3361 tgcttgcggc ttcgcgccgc gcgaaaacga ttcttcgtgt cgagcaatcg ttcgagtctc
     3421 gctcgattgc ggcgatcgtg aaccgcggcc cgaacggaca acggcaccaa cgaactcaac
     3481 acacgcttca tggtttttct cagtcacacc gggctttagc ccggtgctgg aacagtacgc
     3541 atgagcagaa aaccgtttca acggttttcg ctattgtttc ggcagctcgc gggcttgcag
     3601 cagctcttcg tcagcccggc ctttgttaac gtttccgcgc gagatgttcc tggcataatc
     3661 aattgcttcg tcgagtgtgg caaactcgaa gctgttcagc ccgggcggcg tgatggcaac
     3721 agtgcgagcg agaaacagcc atgcggaggt tgttgccgcg ccggtaaaag atcgtttcag
     3781 tttcgcttgc aatcttttgg aaaagctcgc ggccgctgcg ctttgctggc gcccgtttgt
     3841 ttttgcttca acgtaaccat tcgccgccag caacgagaac gtttctgctc ggagttgcgg
     3901 gtcaaccact tcacggctct cgttcacgtt cgcctggagg tatttctgca tatcgagctc
     3961 gaaaaacttc tcgctgccgg tctcttgctt gaaaacgcaa tactcgtgaa gcgcgtaatt
     4021 caccgcggtg ttgagtcccg gtatcggcgt ggcccagttt gtattgtccc cttgcaactt
     4081 agccataaag tctgcgtagt cggtggtcat ttgcccacgg gttgcgctgg cgccgttgct
     4141 gcggctgagc gcgtaatgaa acagcggcgc cttgtcgtaa taacgactcg actcctcgag
     4201 ttcaagacag cggcaacaaa aattgaagtc gggcgagaca gaggcgaaga tgttgccgaa
     4261 acgctgctgc acgcgatcga gcaccgtccg cggcacgatc gagttgagca ttcgcggcac
     4321 tgccggatga ataatcgctt gcgacagcag ccacgatatc cgcaacgtat caacggcgag
     4381 gagtctttcg ctcgccggat actgctcgac acgaatcggc gtcgagttat cgacgattcg
     4441 atcggcgtta taactgatca ccttgtccgg atagcgcgcg gctaaaccga caacgtctcg
     4501 cagcccgcct tttctgaaca tcatccggtc ggtcagataa agaaagtggc tcgcactgta
     4561 agttcgcaat gcctcgtgaa cggcccagtc ccaatgcgcc ggcatctaaa gcgactctgg
     4621 cggacgcaca taacgcaaac cctccaagcc gccacaaaac ttcgcgagcg cgtctcgctc
     4681 cgcctccgac gtcgaattat ccgacaccag cacctcgacg tcttccaccg cctcatccaa
     4741 caccgaccgg atcgcattca tcgcgatcgc cgcgcggttg cgcgtcggaa tcaccacgac
     4801 tgtgccggta taagccatcg tcaaacggct ttcttaaacg ccacgatcaa atcctgacag
     4861 ctcaaatact ctgagcgccc acaccaatat ccgtaacgta tcggctgttt gatccccaac
     4921 ccgcagtgtt cgtaaagcgc gagcacgtgg tccaactcaa acccgatcgc ctcttccggt
     4981 ttctcgcgcg attgcatgcg caccggcggt tgcgcgtgtg gcagaacgat catgctcttg
     5041 ttctggtcga gcagcccgat cgattcgtcg ttgagcagga agaacgagat caaacagcgg
     5101 ccgcccggct ttagcacgcg cgcgacttcg cacaggtagt tttccacctc cgccggcagc
     5161 atgtgcgtga acacggaatt gagcacgacc agatcgaact catcgtcgcc aaacggaaag
     5221 cgatactccg acgcgcgata ctttccctcc gggttgtagt gcgcgttgaa aacgtcgatg
     5281 tgctgaaagc gaaagttcgg atacttgctc gtgtacttct cggtacacca ctcaacagcg
     5341 ctcttcacga gctcgagccc ctcatagctg ccgcgctcgt tgaggtagtc gacgagcggc
     5401 agcgtcttgc ggccgatgcc cgatccgacg tcgaggatct tttcatcagg ccgcaggccg
     5461 caaagctcga tgtaataacg caaaaactct tcgccgtttt gcttgaactc tttgtagctt
     5521 tgcgggccgt cgtgcatgag ctcgacgggc ggcacgagcg aggcgtgacg gccaaaccgc
     5581 gcgagccaaa tctgatcctg aatcttcctt aaagcgaccc cgagcatcat ttcacccgtt
     5641 tgataaaagc tgacggccag tacgtgacgc gttccgtaat cttgccttcg ttaaacgcga
     5701 actgcggttc ttcgatcaca aagtcatcat tttcggcgac aaactcaagc gccgcttgcc
     5761 gcggattgtt ccacgaccag tcgggcgcac tccgcggtgc gccaacgagc cgttccatga
     5821 ttccatccat cgcgacgatg tacgagccga cactgacgat gggcgaatac gcgcgcaact
     5881 ccgcgagcac gtgctgcttc tcgtgattgg aatccagcac aaccatcgtc ttctcgcccg
     5941 gttttatcag cgacttcacc tcttcgacga tccgcggctc gatcgaacta ccctcgatta
     6001 acgtgatcag cggaaacagc gcgtgcgctt cgatcgccgc gcgattgtgc ggacgaatct
     6061 cgacgtcaac accgatcacg cgtccgcgat ccattgcttt gcacaagctc gcgtagaaca
     6121 cgagcgagcc gccgtgcgcg acaccagttt cgacgatcac gtccggctgc acggtgtgga
     6181 tcacttcctg aatccggatc atgtcttccg gcagttgaat catcgggcgg ccgagccagg
     6241 tgaaactgta aacgtatttc gtgtcccagc ccgcgcggag ccagacgtcg gaaatgatcc
     6301 ggaacgcttc aggcgtgtcg agtttgtact cgcgcgtcgc gccgttctcg tcgacgctga
     6361 ttgttccctg ctcgatgtta atgctgatca tttttgtatg actgcagcag ccactccagg
     6421 tcgtccaaca cagacgaagg aacaatgccg aactcaccgc gcacgcggcc gatgtttatt
     6481 cgcggatact tgatcgcggg cgcgcccggc gcaaactcga tctcgcagcc cgtcaattgc
     6541 tgaagcttcg cggccaactg cgcgtttgaa acgttcactc cgctcgcgac attgtaaatt
     6601 tgctgcttgc cttgcgccgc aatccagatc aggttctcta ccacttcgtg gacccaaaca
     6661 taatcctttt ctgactcagg cgctgtttcg aacacgatct tcgcgccggt agcggcttgg
     6721 cgcaagatgc tcggcaggaa gttgtccgac ttgaaatcac ggccgtaaac gttcgcgatg
     6781 cgcgcgacgc gtccggtgcg accacagttc aacgcgatcg attcacccat cagtttagaa
     6841 aggttataaa gatcattcgc gccgcgaagg gcttcgtctt cagcagtcga atcgctgccg
     6901 gcgtaaagcc gcgtcgagga gagataaagc agcgaatcga attcgtgccg cctcacgaaa
     6961 tcgagcaggg tgcaaacatg cgcgtcaacc gtttcgaacg gtttcgatct gaaatccgcg
     7021 gtgacgccga tgcagtagat cacattcccg agattcccgg ccgggacgga ttcgtttcgt
     7081 ttcacggcct gaaactccag cttgtactgc tggagccgcg tggcgaggtg cgagccgatg
     7141 aaacccgaag ctccgaggat agtaatcatc ttgtttctac taacggcgcg tgcagtgcgg
     7201 gatctttctc cagcagcaac ttcggactca cgttctcgac gattctcaat cccagccgct
     7261 cgacgagatc c
//
LOCUS       DASWTX010001279         3613 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_145590, whole genome shotgun sequence.
ACCESSION   DASWTX010001279 DASWTX010000000
VERSION     DASWTX010001279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3613)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3613)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3613
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145590"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..444)
                     /locus_tag="VGD38_19470"
     CDS             complement(<1..444)
                     /locus_tag="VGD38_19470"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEY0730274.1"
                     /translation="MEPVASVLGFLFFGFMAIVLLVIAAKTIRIVPQATVMLVERLGK
                     FDKVASSGLNILVPFLDKPRAVYWTNTRPGLTSIDLREQYIDLPPQPVITRDNVTIHV
                     DSVVYWQITDPVKAVYEMNDLVGGIVQLTITGMRAVMGDMDLDHTL"
     gene            676..2244
                     /locus_tag="VGD38_19475"
     CDS             676..2244
                     /locus_tag="VGD38_19475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730275.1"
                     /translation="MWKDEELLRWPPDVFALVAALLLKSGAYAHAVSGWQRNGNLNEW
                     TKSIKALGYAWSQKPDQPPKQIRDWYRILCKNTSMPVESVCTKGDLCAVLIQLCAAAD
                     EACIGVGCTLPNPAAAANDFRIQASKRLAETTLTQEVSTLCKRVHHSTVRVLPKLHTP
                     QSGITIRSFTHNLALCPAGDVKVKWAECLSEHRHCLNLLLAPWPLEVAPADFEPVEKS
                     RAELADMARGFGFFEYNPRDERDKVSRAQKEGDLISQLKKLLNNARKAVSRIDGVVFP
                     ELALTAAQYEGISDILMDEGIFLICGVRDSPPPGRKAAQNYLRFDIPFSPLISHRQDK
                     HHRWRLDHHQIVQYGLGSCLDVASNWWEHIPIGNRDLHFVVLDNWLTVCPLICEDLAR
                     QDPIAELVRAVGPNLVIALLMDGPQLPSRWPARYATVLADDPGSSVLTLTSIGMAELS
                     RPPSVATGSRAIALWKDAKTGQAITIDLPKDKQGAVLSLSRVFVKEYAADGRDDGGAT
                     GYPTLTGVHYVSYH"
     gene            2351..2569
                     /locus_tag="VGD38_19480"
     CDS             2351..2569
                     /locus_tag="VGD38_19480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730276.1"
                     /translation="MKRLSFADAYGLGLIAKFPEDDWSEIRQHLSADAQKIAQELISP
                     SSRASREVKSAANELRNLARKIDNPSVA"
     gene            complement(2566..>3613)
                     /locus_tag="VGD38_19485"
     CDS             complement(2566..>3613)
                     /locus_tag="VGD38_19485"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEY0730277.1"
                     /translation="RDAPAVARLKAAGAIVLGKTNAAEMAMDYNADNPVFGRTVHFLD
                     PMLTPGGSSGGEAVAIATCMSPGGLGSDLAGSIRIPAHFCGICGLKPTTGRVSGEGQF
                     PPSSGPYGLGAAIGPMARTVADLRLLFEVLSGERPVGRDLRKGLRFAWYADDGVVPVT
                     DETAQAVRNAATALIDAGLIGEERVPPHVERGNELWLKLYSRASVVQLRQAYAGREDE
                     GGSFVSWRLRSADDVPPPSLDEYISNWMERDRLREELLRWMETTPLIIAPVGATPAFE
                     HDTLKVTVQGKTMGTFRAFSYAQAFNVFDLPVVTVPAGRSNSGLPIGVQIVGRPFAEE
                     MVLAAAEIVERVWG"
BASE COUNT          813 a         1099 c          959 g          742 t
ORIGIN      
        1 gagtgtgtgg tccaggtcca tgtcgcccat caccgcgcgc atgcctgtga tggtgagttg
       61 cacgatgccg ccaacgagat cgttcatctc gtaaacggcc ttcacgggat cggtgatctg
      121 ccagtagacg acggagtcga cgtgaatcgt gacgttgtcg cgcgtgataa ccggttgcgg
      181 cggcaggtcg atgtactgct cgcgcagatc gatcgacgtc aaaccgggcc gggtgttggt
      241 ccaatatacg gcgcggggtt tgtcgagaaa cggcacgagg atgttgaggc cgctgctggc
      301 gaccttatca aacttgccga ggcgttcgac gagcatcacg gtagcttgcg gcacaattct
      361 gatcgtcttg gcggcgataa cgagcaacac aatcgccatg aagccgaaga acagaaaccc
      421 caggacagaa gcaactggtt ccataagcga gattcctctc tacacgttcc atgattatac
      481 gcgattggcg cggcgtacgc gtttaattgc gttggcgcgc gccagtgact gtgctagact
      541 cccgcccgtt ctcacagact ccttttcctt gcgtcgcttt gaggtgtccc agtgcctaga
      601 gcaaagaaga gtcctcctat cgtcccgtcc tcaggcctta ctgttgaaca gtttggcgaa
      661 tacatcgcgc cgtccgtgtg gaaagacgaa gaattactgc gttggccacc tgacgttttc
      721 gccctcgtgg ccgctttgct gctgaaatcg ggcgcttacg ctcacgcggt ctccggctgg
      781 cagcgtaacg gcaacctcaa cgagtggact aaaagcataa aagcgctcgg gtatgcctgg
      841 agccagaaac ccgaccagcc accgaaacaa atccgcgact ggtacagaat cctctgcaag
      901 aacacgtcaa tgcccgtaga gagtgtctgc acaaaaggag atctctgtgc ggtgctgatt
      961 cagctatgtg ccgcggctga tgaagcctgt atcggagttg gatgcactct tcctaatccg
     1021 gccgcggcgg cgaacgactt cagaatacaa gcgtccaagc gactcgcaga aactactctg
     1081 acgcaggaag tttccactct gtgcaagaga gtgcatcact ccacggtcag agtactgcca
     1141 aaactacata cgccacaaag cggaataacc attcgttcgt ttactcacaa cctcgcgctt
     1201 tgtccagccg gagacgtcaa agtcaaatgg gcggagtgct tgtctgaaca tcgccactgc
     1261 ctgaatctcc tgctcgctcc atggccgctg gaggtagctc ctgcagattt tgaacccgtc
     1321 gaaaaaagcc gggcggaact tgcggacatg gcccgcgggt ttggtttttt tgagtacaac
     1381 ccccgggacg agcgcgataa ggtctcacga gctcaaaagg aaggcgacct gattagccaa
     1441 ctgaagaagc tcttgaataa cgcgcggaag gctgtctccc gaattgacgg cgtggtcttt
     1501 ccggaactcg cattaaccgc cgcgcagtat gagggcataa gcgatatcct gatggacgaa
     1561 ggaatcttcc tcatttgcgg tgtccgtgac agtccgcctc cgggccggaa agccgcgcag
     1621 aattatttac gtttcgacat tcccttttca ccgcttatct cacaccgtca ggacaaacat
     1681 catcggtggc gattggacca tcaccaaatc gtgcagtacg ggttgggcag ttgtcttgac
     1741 gtcgcctcaa actggtggga acacataccc attggcaatc gggaccttca ttttgtggtg
     1801 ctcgacaact ggctaacggt gtgcccgctc atctgtgaag acctggcccg gcaggatccg
     1861 attgccgagt tggtccgggc tgttgggcca aacctcgtca ttgccctgtt aatggacgga
     1921 ccgcaattgc cttctcgctg gcccgcacgt tacgctacgg ttttggcgga cgatcccggc
     1981 tcatcggttt tgactctcac cagcatcggc atggcggagc tgagccgtcc gccctccgta
     2041 gccacgggtt cgagagcgat cgcgctatgg aaggacgcca agacgggtca ggcaatcacg
     2101 atcgacctgc cgaaagacaa acaaggcgct gtgttgagtc tttcgcgcgt atttgtaaag
     2161 gagtacgccg cggatggccg cgatgacggc ggcgccacag gttatcctac tttgacagga
     2221 gttcattatg tcagctacca ctagtgccgc agccaggcgg caacttattg acaccgacga
     2281 cgctgagtgt tacaaacgca gccggaagga gatcgaaccc gggccgccag acacacgtat
     2341 gaggagacaa atgaagcgcc tttcctttgc tgatgcgtat gggctgggtt tgatagccaa
     2401 attccccgaa gacgactggt cggaaatccg ccaacatttg agcgcagacg cgcagaagat
     2461 cgcgcaagag ctcatctcac caagcagccg cgcctcgcgt gaagttaagt cagcagccaa
     2521 cgaactgcgg aatctcgcac gaaaaatcga taatccttcc gtagcttagc cccagactcg
     2581 ctcgacgatc tcggctgccg ccagaaccat ctcttcagca aacggacgtc ccacaatctg
     2641 aaccccaatc ggtaagccac tgttcgagcg tccggcgggg actgtcacga caggcaaatc
     2701 gaaaacgtta aaagcctgtg cgtagctgaa ggcgcgaaac gttcccatcg tcttgccctg
     2761 cacggtgact ttgagtgtgt cgtgttcgaa ggcgggcgtg gcgccgacgg gcgcgatgat
     2821 gaggggcgtc gtttccatcc agcgcaacaa ctcttcacgc agtcgatcgc gttccatcca
     2881 attactaatg tattcatcca gcgaaggcgg cggcacgtcg tccgcacttc tcaatcgcca
     2941 gctcacaaac gaaccacctt catcctcgcg acccgcgtaa gcctgacgca gttggaccac
     3001 agatgcacga gaatataatt tcagccatag ttcgttacca cgctcgacgt gcggcggaac
     3061 gcgctcctct ccgatcagtc cggcatcgat taaggccgtc gccgcattcc gaaccgcctg
     3121 cgccgtttca tccgtcaccg gcacaacccc atcatccgcg taccacgcga acctcaatcc
     3181 ctttcttaaa tcccttccaa caggcctttc gccactcagc acctcgaaca acagtcgcaa
     3241 gtccgcaacc gttcgcgcca ttggtccaat agcagctcct agtccgtatg gaccactact
     3301 cggcggaaac tgtccctcgc cagacacgcg cccggttgtt ggtttcaaac cacagatacc
     3361 acaaaagtgc gccggaattc ttatcgatcc agccaggtcg ctgcccaaac cacccggcga
     3421 catgcacgtc gcgatcgcca ccgcttcacc accactcgac ccgcccggcg tcagcatcgg
     3481 atccaaaaaa tgcacggtgc gcccaaacac cggattatcc gcgttgtaat ccatcgccat
     3541 ttccgctgcg ttcgtcttcc ccaaaacaat cgcgcccgcc gccttcaatc gcgccaccgc
     3601 cggcgcatcc cgc
//
LOCUS       DASWTX010001280         2300 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_61493, whole genome shotgun sequence.
ACCESSION   DASWTX010001280 DASWTX010000000
VERSION     DASWTX010001280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2300)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2300)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2300
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61493"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1719)
                     /locus_tag="VGD38_19490"
     CDS             complement(<1..1719)
                     /locus_tag="VGD38_19490"
                     /inference="COORDINATES: protein motif:HMM:NF012424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HEY0730278.1"
                     /translation="MSQQSRTDLSEMIAEEFGANAEYVQGLLERFRTNPDLVDDSWRS
                     YFNEILGDGDGASATPAAVQTSGNGAKAAAVVEADGDARPARTETSAAAAPAPERKPA
                     EVRPPEDAEVVPLRGPAAKIVENMERSLTVPTATSERRIPVKLLDENRRLINTYLAEH
                     DRGKASYTHLIAWAILRALDVYPQLNDGYFESENGPARIKRPSVNLGVAVDLTKKDGT
                     RTLLVPNIKNANRLTFSEFLTAYDDVIQRARDGKLQIADFQGTSVSLTNPGTIGTVAS
                     IPRLMEGQSVIVATGAIEHPAEYQAMAAEALSKLGISKAISISSTYDHRIIQGAESGA
                     FLARVHELIIGKHNFYDDIFANLGIPHVPFRWNVDRNPFFTQGDQVLEQSIKEARVIE
                     LMNAYRVRGHLIADTDPLHALPRLYHPELDIETYGLTIWDLDRVFTTDGLANKQASTL
                     REILDVLQRAYCGKVGVEYRHIQSKEEKTWIREQIRREFVVPQPLPAEVKKRLLWKLI
                     SAEQFERFLHTKYLGQKRFSLEGCETVIPVLDCLIDGAGERGVEQITLGMAHRGRLNV
                     LANVIGN"
     gene            1861..>2300
                     /locus_tag="VGD38_19495"
     CDS             1861..>2300
                     /locus_tag="VGD38_19495"
                     /EC_number="5.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate mutase family protein"
                     /protein_id="HEY0730279.1"
                     /translation="MLFAVFGAVVLFAYFATFSRPVTTVILVRHAEKNLDDPNNQDPD
                     LTAAGFARAEEIARMFSGAGINTIFATQYKRTQQTVKPLSDRTGVPVTLLNSKETDEL
                     VTRVQTSLRGQTIFVAGHNSTVPAIASALSGESFSTIPETEYDNL"
BASE COUNT          422 a          662 c          679 g          537 t
ORIGIN      
        1 atttccgatc acgttggcca gcacgttcaa acggccgcga tgggccatgc ccagcgtgat
       61 ctgctcaacc ccgcgttcac ccgcgccgtc aatcaggcag tcgagcaccg gaatgaccgt
      121 ctcacatcct tcgagtgaaa atcgtttctg gcccaggtat ttcgtgtgca gaaaacgttc
      181 gaactgttcc gcggagatca gtttccaaag cagtcgcttc ttcacttctg cgggcagcgg
      241 ctgcgggacg acaaactcgc gccggatctg ttcgcgaatc cacgtcttct cttctttgct
      301 ctggatgtgt cgatactcga cgccgacctt gccgcaatac gcgcgttgca acacgtcgag
      361 aatctctcgc aaggtcgacg cttgtttgtt tgccaaaccg tcggtcgtga aaacgcgatc
      421 gagatcccag atcgtcaggc cgtaagtttc gatgtcgagc tcgggatgat agagccgcgg
      481 cagcgcatgc aacggatcgg tgtcagcgat caggtgaccg cgaacacgat acgcgttcat
      541 caactcgatc acgcgcgctt ccttaatgct ttgctcgaga acctgatcgc cttgcgtgaa
      601 gaacgggttg cgatcgacgt tccagcgaaa cggcacatgc ggaataccga ggttcgcaaa
      661 gatgtcgtcg taaaagttgt gcttgccgat gatgagctcg tgtacgcgcg ccaggaacgc
      721 gcccgactcg gcgccctgaa tgatgcggtg atcgtacgtg ctgctgatcg agatcgcttt
      781 gctgatgccg agttttgaca gcgcctccgc cgccatcgcc tggtattccg ccggatgttc
      841 gatcgcgcct gtcgcgacaa tcacagactg gccttccatc aaccgtggaa tcgaggcgac
      901 cgtgccgatc gtgccgggat tggtgagcga aacactcgtg ccctggaagt cggcgatctg
      961 gagttttccg tcgcgcgctc gctggatcac gtcgtcgtac gcggtcagga attccgagaa
     1021 cgtgagacgg tttgcgttct tgatgttcgg tacgagcaac gtgcgcgtgc cgtctttctt
     1081 cgtcagatcg actgccacgc cgagattgac gctcggccgc tttattcttg ccggtccgtt
     1141 ttcgctttcg aaatagccgt cgttgagctg cggatagacg tcgagcgcgc gcagtatggc
     1201 ccacgcgatc aggtgcgtgt aagacgcctt gccgcgatcg tgttccgcga gatacgtgtt
     1261 gattaggcgg cggttttcgt cgagtagttt tacgggaatg cgtcgttcgg aagtcgcggt
     1321 tggaacggtc agactccgtt ccatgttttc cacgatcttc gctgccgggc cgcggagcgg
     1381 aacgacttcc gcgtcctccg gcggacgtac ctcggccggt ttgcgttccg gagcgggcgc
     1441 tgcggcggcg ctggtttctg ttcgggctgg ccgcgcgtcg ccgtcggctt caacgacggc
     1501 cgcagctttc gcgccgttgc cggatgtttg gacggcggct ggggtcgcac tcgcgccgtc
     1561 tccgtcgcca agtatttcgt tgaaatagga ccgccaggag tcgtcgacga ggtcgggatt
     1621 ggtgcgaaaa cgttcgagca gtccttgtac gtactcggcg ttggcgccaa attcctcggc
     1681 gatcatctct gacaagtcag ttctgctttg ctggctcaaa tctgcctacc tgtctttaat
     1741 tctatgtagt ttgtttgccg aatagactat catctccgca ctccatttgc actttaccgc
     1801 tcttacatgg acgagatcag cgaaccccga acgagaacca gaactatcgt agtgtttgca
     1861 atgctgtttg ccgtgttcgg cgcagtggtg ttgtttgcct atttcgcgac cttttcgcgc
     1921 ccggtgacga cggtgattct cgtccggcac gccgagaaaa acctcgatga tccgaacaat
     1981 caggatcccg atttgaccgc cgcgggcttt gcgcgcgcgg aggagatcgc gcgcatgttt
     2041 agcggcgcgg gtatcaacac gattttcgcg acgcagtaca agcgcacgca gcaaacagtc
     2101 aagccgctgt cggatcgcac gggcgttccg gttacgttgc ttaactcgaa ggaaaccgat
     2161 gagctggtga cgcgagttca gacgagcttg cgcgggcaga cgatcttcgt cgcggggcac
     2221 aacagcacgg ttcctgctat cgcttccgcg ttgagcggcg agagtttttc cacgattccc
     2281 gaaaccgaat acgacaacct
//
LOCUS       DASWTX010001281         1986 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_188980, whole genome shotgun sequence.
ACCESSION   DASWTX010001281 DASWTX010000000
VERSION     DASWTX010001281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1986
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188980"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1037)
                     /locus_tag="VGD38_19500"
     CDS             complement(<1..1037)
                     /locus_tag="VGD38_19500"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY0730280.1"
                     /translation="MIVYYFFAAIAVWIGVKSLLGGVRYADYVRREISRPLPEYFPFV
                     SVIAPTRGPEKGFIDNVRPLLEQNYPEYEILFVFDNPQDPSLPLVNDLGAKVVVSGPA
                     TDSGQKVHNLIGASKEIDPRCEVIVFVDTDARPSTNWLRELVAPLADETLGASTGYRW
                     FVPERGGIASRLRGVWNASVASALGAETTKNFCWGGSTAIRRTTFEELKVAERWRGTV
                     SDDFTITRVLKEAKLPIHFTPRCLVPSVGDCGWNELVEFTTRQIKITRIYAQHLWVAL
                     LLGSALFAIAFFGGIVLLAMRILLGQSWWLVLGFLIVIFALGAAKGFIRWRAVSLALP
                     GYGPELRRDLAA"
     gene            complement(1034..>1986)
                     /locus_tag="VGD38_19505"
     CDS             complement(1034..>1986)
                     /locus_tag="VGD38_19505"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HEY0730281.1"
                     /translation="QSALRVASETGATPDDIVRLRPLLLLGMIALGAGLFFKVAAVPF
                     HMWAPDVYEGAPTSVTAFLSTGSKAASFALYARIFTEALGPMSADWGPLLGLVAAITI
                     MVGNWAAVTQENSKRLLAYSSVSNAGYLLLALVANNLYGYIGLVIYLFVYTLMNMGAF
                     GIIISLRRRGIVGDNVDDLTGLGQKEPGLAAMMTIFMLSLGGLPITGGFIGKWFLFGG
                     LIQRGTGPGGKSWYIWLAVWAILNTVVSFYYYFRFIKVMYLGDRVADNKPLALSPALQ
                     TALIVSVVGILFIGVFPHPLVKLAQDLIGPLASAASVALK"
BASE COUNT          503 a          629 c          517 g          337 t
ORIGIN      
        1 gcggcgagat ctcgccgcag ttcaggacca taaccgggaa gcgccagact aaccgctcgc
       61 cagcgaatga atcctttcgc cgcgccgagc gcgaagatca cgattaaaaa gcccagcacc
      121 aaccaccacg actgcccgag taatatccgc atcgcgagca gcacaatccc gccgaagaac
      181 gcgatcgcaa acagcgctga tccgagcagc agcgccaccc aaagatgctg cgcgtaaatc
      241 cgggttatct tgatctgccg cgtcgtaaac tccacgagct cattccatcc gcagtcgccc
      301 accgacggca cgaggcaacg cggtgtgaag tggatcggca acttcgcttc cttcagcacg
      361 cgcgtgatcg tgaaatcatc agacacagtc ccgcgccagc gttccgcgac tttcaattct
      421 tcaaaggtcg tgcggcgaat ggcagtcgag ccaccccaac aaaaattctt cgtcgtctcc
      481 gcacccagcg ccgacgccac cgacgcgttc caaacacctc tcaggcgcga agcgatgccg
      541 cctctttcgg gaacaaacca cctgtaaccc gtcgaagctc ccagcgtctc atcagcaagc
      601 ggcgcgacaa gttcacgcaa ccaattagtc gagggccgtg cgtcagtatc cacaaacacg
      661 atcacctcac accgcggatc gatctctttt gaagcgccga ttaaattgtg gaccttttga
      721 ccggaatcag ttgccgggcc actcactacg accttggcgc ctaagtcatt aacaagcggg
      781 agagatggat cttgcggatt gtcaaaaaca aataggattt cgtattccgg atagttctgt
      841 tcgagcagag ggcgaacatt atcgataaat cccttttcgg ggccgcgggt tggtgcaatc
      901 accgatacaa agggaaagta ctcaggcagc gggcggctaa tctcacgccg cacgtaatct
      961 gcgtagcgca caccacccaa caacgacttg acgccaatcc aaacagcgat cgccgcgaag
     1021 aaataataga caatcacttc aacgcaactg aggcagcgga cgccagtggc ccaatcagat
     1081 cctgcgcgag cttaaccagc gggtgcggaa aaactccgat gaacagaatc ccgaccaccg
     1141 acacgataag cgcagtttgc agcgccggtg aaagcgccag cggcttgttg tcggcgacgc
     1201 gatcgccgag atacatcacc ttgatgaagc ggaagtagta atagaacgaa acgacggtat
     1261 tgagaatggc ccaaaccgcg agccagatgt accacgactt ccctcccgga cccgtgccac
     1321 gctgaatgag accgccaaac agaaaccact tgccgataaa cccgccagtg atcggcaggc
     1381 cgccgagtga caacatgaag atcgtcatca tcgccgccag ccccggttct ttctgaccaa
     1441 gcccggtgag atcgtcgacg ttatcaccga cgatgccgcg gcgtcgcagg ctgatgatga
     1501 tgccaaacgc gcccatgttc atcagcgtgt agacaaacag gtaaatgacc agcccgatgt
     1561 agccgtaaag attgttggcc actagcgcga gcagcagata gcccgcgttt gagacggacg
     1621 aatacgccag cagccgtttc gagttttcct gcgtgacggc ggcccagttg cccaccatga
     1681 tcgtgatcgc ggcgacgagt cccagcagcg gcccccaatc ggcactcatc ggtccgagcg
     1741 cttccgtgaa aatccgtgca tacaacgcga agctcgcggc tttcgatccg gtagacaaaa
     1801 acgccgtcac cgacgtcggc gcgccttcgt aaacgtccgg cgcccacatg tgaaacggca
     1861 ccgcagcgac tttgaagaac aaaccagcgc cgagcgcgat catgcccagc aacagcaacg
     1921 gccggagtct tacgatgtcg tccggagtcg cgcctgtctc actcgcgacg cgtagcgcac
     1981 tttgaa
//
LOCUS       DASWTX010001282         2585 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_278738, whole genome shotgun sequence.
ACCESSION   DASWTX010001282 DASWTX010000000
VERSION     DASWTX010001282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2585
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278738"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(186..797)
                     /locus_tag="VGD38_19510"
     CDS             complement(186..797)
                     /locus_tag="VGD38_19510"
                     /inference="COORDINATES: protein motif:HMM:NF015658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF305 domain-containing protein"
                     /protein_id="HEY0730282.1"
                     /translation="MLSLSVYAQQTPVVVQPGAPGQPTRKLPPSTRPTLPPTSPADVQ
                     FMQHMIVHHAQAVEMTALIDSRTENKELRTLGARISRSQADEMNFMKRWLAARGESTS
                     APMHNTHNMPGMDMSQHEMLMPGMLTPKQMDALKKAKGAQFDRLFLEGMIQHHNGALI
                     MVKELFDTAGAGQDAELFNFVTDVDSGQRAEIKIMQTMLGEKP"
     gene            complement(918..1406)
                     /locus_tag="VGD38_19515"
     CDS             complement(918..1406)
                     /locus_tag="VGD38_19515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730283.1"
                     /translation="MKHLRRLLVGLVAFVAGVALTPIQFHVEGLGCGRMLDGDGGFSV
                     RSFTSSYSVRLSFAHFRFKSQEKTDEAFDRHVRDAVRVIETTPKLNEHGEVVGRRALV
                     ITFNSEVKQSFASLVWTDGKSLHAIDSPSLIHVIEFEKGILGEWRLGVRRIKYLLAPD
                     AL"
     gene            1515..1727
                     /locus_tag="VGD38_19520"
     CDS             1515..1727
                     /locus_tag="VGD38_19520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730284.1"
                     /translation="MDELIRRITEKTGISEDQARSAVNTVSGFLKEKLPAPIAGQVDN
                     VLSGAGGMTDKLGDAAAKVGGIFGGS"
     gene            complement(1740..2459)
                     /locus_tag="VGD38_19525"
     CDS             complement(1740..2459)
                     /locus_tag="VGD38_19525"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013087.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY0730285.1"
                     /translation="MPLIYSSGCKVHRRKLMSSIEADFDRLALLDDEGWTANNHYHNF
                     LLKYVPENCENALEIGCGTGAFAMELGRRARRVVAIDMSPEMIGVARRRSAGVENVEF
                     ELADAMRWEFPKAQFDFVCSIATLHHLEQREILTKINDALRPNGVLVVLDLVESSGLV
                     ERMMDVAALGVSAGLRLIHNGRLRPPPEVRKAWEQHGKHDHYSTVRQVRTLADEILPG
                     SQVKRCVFWRYLLTYRKPAMK"
BASE COUNT          574 a          707 c          696 g          608 t
ORIGIN      
        1 gtccagccgg ttcgggacta aacggatctg cttgcgcttg cttgtccgcg ggcttcgtgg
       61 cgttctgcga aggcgacggc gttggagttt gggcgaacgc cgttgcggcg aagcacgcgc
      121 acaagacgaa gaaagttact agtgatcggg aggtaaaatt attaattcaa ttcatcctca
      181 ttcctctagg gtttttcacc cagcatggtt tgcatgatct tgatctctgc gcgctggccg
      241 ctgtcgacgt cggttacgaa attaaaaagt tcagcgtcct ggccggcgcc ggcggtatca
      301 aacaactcct taaccatgat caaagcgccg ttgtggtgtt gaatcattcc ttccagaaac
      361 aaccgatcaa actgcgcgcc ctttgccttt ttcaaagcgt ccatctgttt tggcgtaagc
      421 atgccgggca tgagcatttc atgttgtgac atatccatgc cgggcatgtt gtgcgtgttg
      481 tgcatcggcg ccgatgttga ttcaccgcgt gctgccaacc agcgtttcat aaaattcatt
      541 tcgtctgcct gcgatctgct gatgcgcgcg ccgagtgtgc gcagttcctt gttctcggtg
      601 cgcgaatcga tcagcgccgt catctcaact gcctgcgcgt ggtgcacgat catgtgttgc
      661 atgaactgca cgtcggcggg cgatgttggc ggcagtgttg gtctggttga aggtggaagc
      721 ttgcgcgtgg gttggcccgg cgcgccgggt tggaccacta ccggcgtctg ctgtgcgtag
      781 actgacagcg ataacaaaga tacaaaagca acggcggcca gaagccggct tcggcgtatc
      841 aggactctgc ttacgtgccg cattgaacgg ctcacattat cacaaagcgg gcgtgaaagc
      901 gcgagccggt gggcctgtta tagagcgtct ggagcaagca gatatttaat tctgcggacg
      961 ccgagccgcc attctccaag aattcctttc tcgaattcaa taacgtgtat gagtgaaggg
     1021 gagtcgatgg cgtgaagaga cttgccatcg gtccagacga gagaggcaaa ggattgtttg
     1081 acttcggaat tgaaggtgat gaccagggct cttcgcccga ctacttctcc gtgctcgttt
     1141 agctttggcg tagtttcgat gactcgaact gcgtcgcgga cgtgtcgatc gaatgcctcg
     1201 tcggtttttt cttgtgactt gaaacggaag tgtgcgaagg acaggcgcac ggagtaggag
     1261 gaggtaaacg atctgacaga gaatccgccg tcgccgtcaa gcatgcgtcc gcaacccagg
     1321 ccctctacgt ggaactgaat cggagtgaga gctacgccgg caacgaacgc gacgaggcct
     1381 acaagtaaac gacgaagatg cttcattaga acgtttacac ttcgtgagcg cactgcggtt
     1441 ccacgacttg agtagtaagg ttcgaatctg gtatgacttt cttccttccc ccgattctgc
     1501 aaggagcgag acacatggac gaactcatca gacgcataac tgagaagacg ggaatttcag
     1561 aagaccaggc gcgctctgcc gtgaacacgg tatcggggtt tttgaaagag aagttgccgg
     1621 cgccgatcgc ggggcaggtt gataacgtgc tgagcggcgc gggtggaatg accgacaagc
     1681 tcggcgacgc cgccgcgaag gttgggggta tcttcggcgg ctcttagttt aaatctgtgt
     1741 tacttcatgg ccggttttcg ataagtcagc aagtaacgcc agaacacaca tctcttaacc
     1801 tgcgatccgg gcaggatctc atctgcaagt gtgcgcactt gtctgacggt tgaataatga
     1861 tcgtgtttgc cgtgttgctc ccacgccttg cgcacctctg gcggtgggcg caatcgacca
     1921 ttgtgaatca acctcaaccc ggcactcact cccagagcgg cgacatccat catccgttca
     1981 accaacccac tcgactcaac caaatccaac acgaccaaaa ccccattcgg cctcaacgca
     2041 tcgttaatct tagttaggat ctcccgctgt tccaggtgat gcagcgtcgc aatcgaacag
     2101 acgaaatcaa actgcgcctt cggaaactcc caccgcatcg catccgccaa ctcgaactca
     2161 acattctcga cccccgccga cctcctccgc gcaaccccaa tcatctccgg cgacatatca
     2221 atcgccacca ccctcctggc tctcctcccc aactccatcg caaacgcccc cgtcccacac
     2281 ccgatctcca gtgcgttttc gcagttctcc ggaacgtatt tcagaaggaa attgtgataa
     2341 tgattattcg ccgtccaccc ttcatcatcc agaagagcga ggcgatcaaa gtctgcttcg
     2401 atagacgaca ttagcttgcg gcgatggact ttacagccgc ttgaatagat caacggcaat
     2461 cgtttcgcag atatccttta cgtggttcca gtcgtgccag tttggatgca ggttgcggta
     2521 ttcgcttaag tttgtctgcc ctaaatcata aggcatggga ttggataact ggacttgcaa
     2581 ctgct
//
LOCUS       DASWTX010001283         2184 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_210666, whole genome shotgun sequence.
ACCESSION   DASWTX010001283 DASWTX010000000
VERSION     DASWTX010001283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2184
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210666"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..343
                     /locus_tag="VGD38_19530"
     CDS             <1..343
                     /locus_tag="VGD38_19530"
                     /inference="COORDINATES: protein motif:HMM:NF012688.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase"
                     /protein_id="HEY0730286.1"
                     /translation="SIYGRIRPLAGITDRNANIRKAAEREAINMPIQGTASDIVKIAM
                     LHVDEEFKRAGLQARMLMQVHDELLVEVPDAEVEKVTEILKHEMESAVSLDVPLVADV
                     GVGENWMDAKP"
     gene            352..2133
                     /locus_tag="VGD38_19535"
     CDS             352..2133
                     /locus_tag="VGD38_19535"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0730287.1"
                     /translation="MQPAEKKPEVVYRRMPDARPAEAAVVVDLAKRAFVRAITPLIIG
                     FLLLLGLVGALGLRSANKMESVAFNARDLTFQYSAQLALLQDLRLMVTKLDNEARLRH
                     MSASVGDFSPPFDLRLNSARDDVRKTFASLNRPPLSEKKEWVALRTDLEKYLEVTKDE
                     RSYSLAGFQSVSVVDKGLQAITKSLQDRQEEVVKDVLRIQAEARRTILIWTLVALGFG
                     ALVAAGTVWQVQRHFWQMRSSMLDARRERLFTTQLVEGMVSAVAAIDEEDRIRSANAA
                     FFRIFPGASIGASVLERFAPDDAMKLLDTVTAIRVNKATYHGRFVTQVEEEDKSFDVY
                     SSPLAIDGKRGQIVTLVDATEAAESERTLRRSESLAAVGQATTQVAHEIRNPLGSIRL
                     GVSMLRDSVNDQEALNTIELVERGIKHLNKLVVDVTQFSRQKALERTAVDLHESLESS
                     IDLVSDKILEKNANVEKLFARRAIIGQWDAYQLRQVFVNVIANAIDASDENASVRIST
                     ELLTFDGDGNGQPRKPYARIRIADEGKGMDKATRDRIFEPFYSTKKRGTGLGLAIVKQ
                     IVEQHGGKIAVASEPGRGSEFSIDLPI"
BASE COUNT          495 a          588 c          668 g          433 t
ORIGIN      
        1 atcgatctat ggccgcattc ggccgctggc cggcatcacc gatcgcaatg cgaacatccg
       61 caaggcggct gaacgcgaag cgataaacat gccgatccag ggtaccgcaa gcgacatcgt
      121 gaagatcgcg atgctgcacg ttgatgaaga gttcaagcgt gcggggctgc aggcgcgcat
      181 gttgatgcag gtgcatgacg agttgctggt cgaggtgcct gatgcggaag ttgagaaggt
      241 aacggagata ctgaaacacg agatggagtc ggcagtttcg ctcgacgtgc cgctggtagc
      301 agatgtgggc gtcggtgaaa attggatgga cgcgaagccc tgacaacgtc gatgcaaccc
      361 gctgagaaga aaccagaagt cgtttaccgg cgcatgcccg atgcacgccc ggcggaagcc
      421 gcagtcgtag tggatctcgc gaagcgcgcg ttcgtgcgcg cgattacgcc gctgatcatt
      481 ggttttttgc ttctgctcgg gttggttggt gcacttgggt tgcgtagcgc caacaagatg
      541 gagagcgttg cgttcaacgc tcgcgactta acgttccagt actcagcaca gttggcactg
      601 ctacaagatc tgcgcttgat ggtgactaag ctcgataacg aagcgcgcct gcgtcacatg
      661 tcagcgtccg tcggcgactt ctcaccgccc ttcgatctca ggctcaactc agcacgtgac
      721 gacgtgagaa agacgtttgc ctctttaaac cgcccaccgc tttccgagaa aaaggaatgg
      781 gtcgcgctgc gcactgatct ggagaagtat cttgaagtaa ccaaagatga aagaagctat
      841 agtttagcgg ggttccagag cgttagtgtc gttgataagg gacttcaggc aataacaaag
      901 agtttacagg acaggcagga agaggttgtt aaggacgtac ttagaattca agcagaggcg
      961 cggcggacga ttctcatttg gacgctggtt gctctaggct tcggtgcgct tgtcgctgcc
     1021 ggcacagttt ggcaggtgca gcgtcatttc tggcagatgc ggagcagcat gctggacgcg
     1081 cgccgcgaac gactctttac gactcagctt gtcgaaggaa tggtcagcgc ggtagcggcg
     1141 atcgatgaag aggatcggat tcgcagcgcc aacgccgctt tcttccgtat attccccggc
     1201 gccagcatcg gcgcctccgt gctcgaacgt ttcgcgcccg acgacgcgat gaaactgctc
     1261 gacaccgtga ccgccattcg cgtcaacaaa gcaacctacc acggccgctt cgtgacgcag
     1321 gtcgaagagg aagacaaatc cttcgacgtc tactcatcac cacttgcaat cgacggcaaa
     1381 cgtggccaga tcgtgacgct cgtcgacgcc accgaagcag ccgaatccga acgcacgctg
     1441 cgccgcagcg aatcgctcgc cgctgtcgga caagcgacga cgcaagtggc ccacgagatc
     1501 cgcaacccac tcggcagcat ccgtctcggc gtttcgatgt tgcgcgatag cgtcaacgat
     1561 caggaagcac tgaacacgat cgagctcgtc gagcgcggta tcaagcacct gaacaaactt
     1621 gtcgtcgacg tcacccagtt ttcacggcag aaagcgctgg agcgtactgc tgtcgatctg
     1681 cacgaatcgc tcgagagcag catcgatctc gtcagcgaca agattctcga gaagaatgcg
     1741 aacgtcgaga agctgttcgc gcgccgggcc attatcggcc agtgggacgc gtatcagttg
     1801 cgacaggttt ttgtgaacgt gatcgccaac gcgatcgacg cgagcgacga gaatgcgtcc
     1861 gtgcgcatct cgacggagtt gttgacgttc gacggcgatg gcaacggcca gccgcgcaag
     1921 ccgtacgcgc ggatcagaat tgccgacgaa ggcaaaggca tggacaaagc cacgcgcgat
     1981 cgaatcttcg aaccgtttta ttcgacgaag aaacgcggga cgggtttagg gctggcgatc
     2041 gtgaagcaga tcgtcgagca gcatggcggc aagatcgcgg ttgctagcga gcccgggcgg
     2101 ggatcggagt tcagtattga cctgcctatt tagcgattga ttcgagtgat ttccgcgcgg
     2161 cgtcaatcgt ttggttgatt atct
//
LOCUS       DASWTX010001284         1773 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_82895, whole genome shotgun sequence.
ACCESSION   DASWTX010001284 DASWTX010000000
VERSION     DASWTX010001284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1773
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82895"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..895
                     /locus_tag="VGD38_19540"
     CDS             <1..895
                     /locus_tag="VGD38_19540"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEY0730288.1"
                     /translation="ARGELKTRIYAIAPLPQWERLGQTGVRAHFGSDMLRVGGLKGFS
                     DGSLGSTTALFYEPYRDDPSTSGIAGDEMYPEGAMLKRVTEADRAGLQIMIHAIGDRA
                     NDLILSIFEQVERENGKRDRRFRIEHAQHLRPQDIPRFARDRVIASMQPYHAIDDGRW
                     AEKRIGKERAKTTYAFRSLLDAGVTLAFGTDWTVAPLNPMLTIYAAVTRRTIDGKSAK
                     GWVPEQKITVEETVRAYTIGSAYAEFQENVKGTITTGKLADLVLLSRDIFKIDPKEIE
                     NVKVVLTMVDGRVVYEERERE"
     gene            complement(871..>1773)
                     /locus_tag="VGD38_19545"
     CDS             complement(871..>1773)
                     /locus_tag="VGD38_19545"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEY0730289.1"
                     /translation="IVLVVSVLAGINLLGIRQAAIVSNVFTVGKLVPIIIFIGVGLFF
                     LNPQAFVPEKAPTAGAFSQSVLLLVYAFTGFEMATIPAGEVREPQKNMPRALLIAILV
                     VAVLYILIQIVSVGTLPGLENSTKPLADAGSQFLGTAGGAIISAGAIISITGNLNILL
                     LSGSRLPFAMAEQKQLPAFIGSVHRSFFTPYVSILLTAGLMLFLTLKSSFLALLTIST
                     IARLVTYGATCISLPVFRRRPDVPPPAFRLPGGTIVAVLSVALIVWLLWHSTVAQAKA
                     TAWAAGAGLLIYVAYWIYSRSRSS"
BASE COUNT          417 a          527 c          535 g          294 t
ORIGIN      
        1 cgctcgcggg gaactgaaga cgcgcatcta cgcgatcgcg ccgttaccgc agtgggaacg
       61 tttgggccaa acgggcgtgc gcgcgcactt cggcagcgac atgcttcgcg tcggcggatt
      121 gaaaggcttc tcggatggca gtctcggatc gacgacggcc cttttctacg aaccttatcg
      181 cgacgatccc tcgacgagcg gtatcgcggg cgacgagatg tatcccgaag gcgcgatgct
      241 caaacgcgtc acggaagcgg atcgcgccgg tttacagatc atgattcacg cgatcggcga
      301 ccgcgccaac gatctgatcc tgagcatctt cgaacaggtc gaacgggaga acggcaaacg
      361 cgatcgacgc ttccgcatcg agcacgcgca gcatttgcgc ccgcaggaca tcccacgctt
      421 cgcacgcgat cgggtgatcg cgtcgatgca gccgtatcac gcgatcgacg atggacgctg
      481 ggccgagaaa cgcatcggca aagaacgtgc gaaaaccact tacgcgtttc gttcgctgct
      541 cgacgccggc gtaacactcg ccttcggcac agactggacc gtcgcgccgc tcaatccgat
      601 gctgacgatc tacgccgccg taacgcgccg cacgatcgac ggcaagagcg caaaaggctg
      661 ggtgccggaa cagaagatca cagtcgaaga aaccgtgcgc gcttacacga tcggttcggc
      721 ctacgcggag tttcaggaaa acgtgaaggg aactatcacc accggcaaac tcgccgacct
      781 cgtgctgctc tcgcgcgaca tcttcaagat cgatccaaag gagatcgaga acgtgaaggt
      841 cgtgctgacg atggtcgacg gccgtgtcgt ttacgaagag cgcgagcgcg aatagatcca
      901 ataggcaacg tagatcagaa gtcctgcgcc ggcggcccat gccgttgctt tcgcctgtgc
      961 gacagtgctg tgccacagca accagacgat cagtgccact gaaagcacgg cgacgatcgt
     1021 cccgcccgga agtcgaaatg cgggcggtgg tacatccgga cgacggcgaa acaccggcag
     1081 ggaaatacag gtcgccccgt atgtcacgag ccgcgcgatc gtgctgatcg taagcaacgc
     1141 gagaaacgag ctcttcagcg tgagaaacag catcagtccc gccgtcagca ggatcgacac
     1201 gtaaggcgtg aagaacgatc gatgaacgct gccgataaat gcaggcagtt gtttctgctc
     1261 cgccatcgca aacggcagcc gcgaaccgga caacagcagg atgttgaggt tgcccgtgat
     1321 cgaaatgatt gcgccagccg aaataatcgc gccgcctgcc gtgccgagaa actgtgaccc
     1381 cgcgtcggcg agaggcttcg tcgaattctc caaccccggc agcgtgccga cgctgacaat
     1441 ctgaatcagg atgtaaagca cggcgacgac gaggatcgcg atgagcaacg cgcgcggcat
     1501 gtttttctgt ggttcgcgca cctcaccggc cggtatcgtg gccatctcaa accctgtaaa
     1561 cgcgtagacg agcagcaaaa cagattgcga gaacgctccc gcggttggag ctttctccgg
     1621 cacgaaagcc tgcgggttga gaaagaacag acccacgccg atgaagatga tgatgggcac
     1681 gagcttaccg accgtgaaga cgttactgac aatggccgct tgcctgatcc cgaggaggtt
     1741 tattcccgcg agtacgctga cgacgagaac aat
//
LOCUS       DASWTX010001285         1718 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_145690, whole genome shotgun sequence.
ACCESSION   DASWTX010001285 DASWTX010000000
VERSION     DASWTX010001285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145690"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..292
                     /locus_tag="VGD38_19550"
     CDS             <1..292
                     /locus_tag="VGD38_19550"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEY0730290.1"
                     /translation="GLFMDVFLNGVPVFSLQVEALHPLLGPNQSSMIQAAQQISRSVT
                     LQGNSTNSISIRLTSTSLVQNEVPEPASMVLLVSGLGALAGVLKKRRKTAGE"
     gene            385..1386
                     /gene="hemE"
                     /locus_tag="VGD38_19555"
     CDS             385..1386
                     /gene="hemE"
                     /locus_tag="VGD38_19555"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: protein motif:HMM:NF013381.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HEY0730291.1"
                     /translation="MRACRREPVPYTPIWLMRQAGRYMAEYRAVRAKTTFLELCKTPS
                     LAAEVTVTAAERLGVDAAIIFADILLILEPMGANLEFAHGEGPVIHNPVRQASDVDRL
                     RQLEDVSALEFVNEAIRQTRRALKPDIPLIGFSGAPFTLASYLTEGGGSKNYIHTKRL
                     MYNDHGAWHAMMGMIAASLVKYLNAQIDAGAQAIQIFDSWVGCLSPDDYREFVLPHTR
                     AVIQNIKPGVPVIHFGTGTAALLELMREAGGDVIGLDWRVRLDEGWRRVGHDRAVMGN
                     LDPIALFAERDVLLAQAKRVLDQAEGRPGHIFNLGHGILPETPVENVSALVEFVHEL"
     gene            1376..>1718
                     /locus_tag="VGD38_19560"
     CDS             1376..>1718
                     /locus_tag="VGD38_19560"
                     /inference="COORDINATES: protein motif:HMM:NF012964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HEY0730292.1"
                     /translation="MNYDALLVVSFCGPEGMDDVIPFLENVLRGRNVPRERMLSVAHH
                     YEMFGGVSPINQQNRDLIAALRQELETHGPSLPIYWGNRNWHPLLPDTLRQMADDGVR
                     NALAFVTSAYSS"
BASE COUNT          345 a          467 c          532 g          374 t
ORIGIN      
        1 gggacttttc atggacgtgt ttctgaatgg cgttcctgtg ttctctctcc aggtggaggc
       61 gctgcatcca ctcctcgggc caaaccagtc gtcaatgatc caggcggcac aacagatttc
      121 gcgctcagtc acactccagg gcaacagcac gaactcgatc tctattcgac ttacctcaac
      181 ttcgctggtg caaaatgaag tccctgaacc ggcatcaatg gtattgctgg tctcaggcct
      241 cggagcattg gccggcgtgt tgaagaaaag acgaaagacg gctggcgagt agacaagttt
      301 ctccagccag ggaggcgatg aatatttagt gcggcgtagt ataattcgcc tcctttggat
      361 caagcgttac aaacgagcgt attcatgcgg gcttgccgcc gcgagccggt gccttacaca
      421 ccgatctggc tcatgcggca ggcgggccgc tacatggccg aataccgcgc cgttcgcgcg
      481 aaaaccacgt ttctcgaact ctgcaaaacg ccttcactcg cggctgaagt cactgtcacc
      541 gctgctgagc ggctcggcgt cgacgccgcg atcatctttg ccgacatcct tttgatcctc
      601 gaaccgatgg gcgcaaacct ggagtttgct cacggcgaag gcccggtgat tcacaacccc
      661 gtgcgccagg catcggatgt cgatcgattg cgacaactgg aagacgtgag cgcgctcgag
      721 tttgttaacg aggcgatccg gcaaacacgc cgcgcgctca agcccgacat tccgctgatc
      781 gggttttcgg gtgcgccgtt tacgcttgcg tcgtacctga cggaaggcgg cggttcgaaa
      841 aactacattc acacgaagcg gttgatgtac aacgaccacg gcgcttggca cgcgatgatg
      901 ggaatgatcg cggcgagtct ggtgaagtat ttgaacgcgc agatcgatgc gggcgcacag
      961 gcgattcaga tttttgattc gtgggttggg tgtttgagtc cggatgatta tcgtgagttt
     1021 gtgttgccac acacgcgcgc ggtgattcaa aacatcaagc cgggcgtgcc ggtgattcac
     1081 ttcggcaccg gcaccgccgc gctgcttgag ttaatgcgcg aagcgggcgg cgatgtgatc
     1141 ggactcgatt ggcgtgttcg actcgacgaa ggttggcggc gcgtgggaca tgaccgggcg
     1201 gtgatgggca acctcgatcc gattgcgttg ttcgccgaac gggatgtttt actcgcgcaa
     1261 gcgaaacggg ttttggacca ggcggaggga cgcccgggtc acatcttcaa tctcgggcac
     1321 gggatcttgc cggagacgcc ggtcgagaac gtgagcgcgt tggtagagtt tgtccatgaa
     1381 ttatgatgcg ttgttagtgg tgtcgttttg cgggccggaa gggatggacg acgtaattcc
     1441 cttcctcgaa aacgtcctgc gcggacgaaa cgtgccgcgt gagcgcatgc tcagcgtcgc
     1501 gcatcattac gagatgtttg gcggcgtcag tccgatcaat caacagaacc gcgacctgat
     1561 cgccgcgctc aggcaagagc tcgaaactca cggaccgagc cttccgatct actggggcaa
     1621 tcgcaactgg catccgcttt tgccggatac gttgcggcag atggcggacg acggcgtgcg
     1681 caatgcgctg gcgtttgtga cgtcggctta cagttcgt
//
LOCUS       DASWTX010001286         2819 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_210734, whole genome shotgun sequence.
ACCESSION   DASWTX010001286 DASWTX010000000
VERSION     DASWTX010001286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2819
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210734"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..604
                     /locus_tag="VGD38_19565"
     CDS             <1..604
                     /locus_tag="VGD38_19565"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0730293.1"
                     /translation="RGKSKRARTYLMRAHEALPDDVRVSLLLGLACADDGEVEQAKDL
                     LRKAMRQGGSSFAGHYGLGWLFVNEKNWRGAIGEFKRALTARPSPEAHYVLGCLYYEL
                     NRDDLAVRHLRKAVQMDESYGEAFYLLAQTYERTGRTELAQEALKRAGQRATPAVPLF
                     QTSKTGFLRFMAGADKRLADMLRDDALKAFEVSPPQQQSH"
     gene            968..1507
                     /locus_tag="VGD38_19570"
     CDS             968..1507
                     /locus_tag="VGD38_19570"
                     /inference="COORDINATES: protein motif:HMM:NF014657.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HEY0730294.1"
                     /translation="MAVPSVMRIELVNLEHGRADFAHLYQPDELGSLDERVRLVEPVD
                     VNGKVRLAGAEVFVNGHIETRVQVECDRCLKQVEIPVNAGFDLQYITGAEYESSAAAE
                     LTEEALSVSVFDGEVIDVDEIVKEQILLAVPTRMLCQPDCKGICPVCGIDKNTGECEC
                     ETNEVDPRWAALKNLTSGK"
     gene            1570..1752
                     /gene="rpmF"
                     /locus_tag="VGD38_19575"
     CDS             1570..1752
                     /gene="rpmF"
                     /locus_tag="VGD38_19575"
                     /inference="COORDINATES: protein motif:HMM:NF013908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEY0730295.1"
                     /translation="MPNPKRRHSKARRDKRRAHDALRVPQTTLCPNCREPRMPHRVCP
                     KCGYYKGRQVVQVEET"
     gene            1704..>2819
                     /gene="plsX"
                     /locus_tag="VGD38_19580"
     CDS             1704..>2819
                     /gene="plsX"
                     /locus_tag="VGD38_19580"
                     /EC_number="2.3.1.274"
                     /inference="COORDINATES: protein motif:HMM:TIGR00182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043811 - phosphate:acyl-[acyl carrier
                     protein] acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HEY0730296.1"
                     /translation="MRLLQRPPGGASRRNIKPKTPVRTQSQNEAPLTGKVVLDAMGSD
                     HAPHVEIDGALAATRDLGVKVILVGQAHMVEPELRRCGWRGDGDRGIEFVEAAEVIAM
                     DDPVATSVRRKKKSSLRIGSKLVSEGRGDGFVSAGNTGAAMATAKMVIGAIPGVDRPA
                     LAAMIPTKAGKPTLLLDVGANSECKAHHLAQFAIMGDAYSRSVLGTVKPTVGLMSIGE
                     EEAKGNDLTKEAFPLLKELSGINFVGNVEGRDVFSGQVDVIVTDGFTGNVMLKLSEGL
                     TEAMLSMLKRELTATAVTKAGAVLAKPAFQSIKKRLDYTEYGGAPLLGVRRIVVVGHG
                     RSNARAIRNAIRSVKECSEHRTAQSIEYGIATSRRFVA"
BASE COUNT          611 a          727 c          904 g          577 t
ORIGIN      
        1 tcgcggtaag agcaaacgcg cgcgcacgta cctgatgcga gcgcacgaag cgttgccgga
       61 tgatgttcgc gtttcgttgt tgttgggtct ggcgtgtgcc gatgacggtg aagtcgaaca
      121 ggcgaaggat cttttgcgca aggcgatgcg gcaaggcggt tcgtcttttg ccgggcatta
      181 tggtttgggc tggttgtttg taaatgagaa gaactggcgc ggtgcgattg gcgagttcaa
      241 gcgggcgttg acggcgcggc cttcgccgga agcgcattac gtgttgggtt gtttgtatta
      301 cgagctgaat cgcgacgatt tggcggtcag gcatctgcgc aaagcggtgc agatggatga
      361 gagttacggc gaggcgttct acctgttggc gcaaacatac gagcgaaccg ggcggacgga
      421 attggcgcag gaggcgctga aacgggcggg ccagcgcgcg accccggcgg tcccgttatt
      481 tcagacgtca aaaaccggtt tcctgcgttt catggcgggc gccgacaagc gcctggccga
      541 catgttgcgc gacgacgccc tgaaggcctt cgaggtcagc cccccgcaac aacagtcgca
      601 ttaagcgtcg cttcgttcaa aacgccgaag gcgttcgcaa gtttcagccc agggttggta
      661 caaccctggg taacagtaca agaaggagtt ctaacgctga aagcgttggc aagcccttgt
      721 gcgatcccct cgccaacgct ttcagcgttg aaaatgcgta atttgttggt gccccagggt
      781 tgtcgcaagc tccaacctgg ggctggaatt agcgaacgcc ttcggcgttt cgtcggcggg
      841 aattggcgaa cgccttcagt gttccgtcgc gtggtatcgc gcggtcgcat atatgcgtcg
      901 cgttgacagg ggcgcatgtg tcgctataat ggcccctttg tgcgcatagc ccccaaaact
      961 gctattcgtg gctgtgccga gtgtgatgcg gattgagctg gtaaacctgg agcatgggag
     1021 agctgatttt gctcacctgt accagcctga tgaattgggc tcgctggacg agcgcgtaag
     1081 actcgtcgag cccgttgatg tcaacggtaa ggtgcggctc gcgggagccg aggtctttgt
     1141 caacggacac atcgaaactc gcgtccaggt cgagtgcgat cgctgtctaa aacaggtcga
     1201 aatcccggtc aacgccggct tcgacttgca atacattacc ggcgcggagt acgaatccag
     1261 cgccgcggcg gaactgaccg aagaagcatt gtcagtttcc gtcttcgacg gcgaagtaat
     1321 cgacgtcgac gagattgtta aagagcagat cctgctggca gttccgacac gaatgctgtg
     1381 ccagcctgac tgcaagggta tctgtcctgt ctgcggcatc gacaaaaaca cgggcgagtg
     1441 cgagtgtgag accaacgagg tcgatccgcg ctgggcagca ctgaagaact tgaccagtgg
     1501 taagtagtga gtggtaaccc gcaagttacc attgaccact taccatttaa caatttagca
     1561 ggagctatta tgccaaatcc gaaacggcga cattccaaag ctcgtcgcga caaacggcgc
     1621 gcgcacgatg cgctgcgtgt gccgcagacc accctttgcc cgaactgccg ggaaccccgc
     1681 atgccccatc gtgtttgtcc caaatgcggc tattacaaag gccgccaggt ggtgcaagta
     1741 gaagaaacat aaaaccgaaa acgccagtgc gaactcagtc gcagaatgag gcccccctga
     1801 cgggcaaagt cgttctcgac gcaatgggaa gtgaccatgc gccgcacgta gagattgatg
     1861 gcgcgctggc tgccacccgc gatctcggcg ttaaagtgat tctcgtgggc caggcccaca
     1921 tggttgagcc ggaactgaga cgctgcggct ggcgcggcga cggcgaccgc ggtatcgagt
     1981 ttgtcgaagc ggctgaagtg atcgcgatgg acgatcccgt tgcgacttca gtcaggcgca
     2041 agaagaagag ctctttgaga atcggttcga agctggtcag cgaaggccgt ggcgacggtt
     2101 ttgtttccgc gggaaacacc ggcgcggcaa tggcgacagc aaagatggtg atcggcgcga
     2161 ttcccggtgt ggaccgtccg gcactcgccg cgatgatccc gacgaaagcg ggcaaaccaa
     2221 cgttgttgct cgacgtcggc gcaaactccg agtgcaaagc gcatcatctc gcgcagtttg
     2281 cgatcatggg cgatgcgtac tcgcgttcgg tgctcggcac cgtcaaacca actgtcggac
     2341 tgatgagcat cggcgaggaa gaagcgaagg gaaacgatct gacgaaagaa gcgtttccgc
     2401 tgctgaaaga gttgagcggt atcaatttcg tcggcaatgt cgaaggccgc gatgtgtttt
     2461 cgggccaggt tgatgtgatc gtcaccgacg gtttcactgg aaacgtgatg ttgaaactgt
     2521 ccgaaggttt gaccgaagcg atgctttcga tgttgaagcg cgagctgacc gcgacggcgg
     2581 tgacgaaagc aggcgcagtg ctcgcgaaac cggcttttca aagtatcaag aagcgtctcg
     2641 actacacgga gtatggcggg gcgccactgt taggtgtcag gcgtatcgtg gtggtcgggc
     2701 atggacgttc gaacgcccgc gcgattcgca acgctatcag gagtgtgaag gagtgttcgg
     2761 aacatcgtac cgctcaaagt attgagtacg gtattgccac atcgaggcgg tttgtggcg
//
LOCUS       DASWTX010001287         4293 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_61612, whole genome shotgun sequence.
ACCESSION   DASWTX010001287 DASWTX010000000
VERSION     DASWTX010001287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4293
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61612"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1859
                     /locus_tag="VGD38_19585"
     CDS             <1..1859
                     /locus_tag="VGD38_19585"
                     /inference="COORDINATES: protein motif:HMM:NF019344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY0730297.1"
                     /translation="GAKYRGEFEDRLKAVIKEVEESEGAIVLFIDELHTLVGAGAAEG
                     AIDASNMLKPALARGELRCVGATTLNEYKKHIEKDAALERRFQVVYVGEPTVEDTIAI
                     LRGLKERYEVHHGVRIKDSAIVAAATLSNRYITDRFLPDKAIDLIDEAASRLRIEIDS
                     LPQEIDQLEREIIQLEIERQALQREDDAKSKARLKEIEQRIADLKEKSSGMKAKWQSE
                     KEAIEHMRKAKAELEQLRLQLDQARNAGDLARASEIQYGKIPELEQRLKAEQEKLARF
                     QQDGVMLKEEVDEEDVAGIVAKWTGIPVSRMLEGEMQKLITMEDRLSHRVIGQEEALT
                     AVANAVRRARAGLQDPNRPIGSFIFLGPTGVGKTETARALAEFLFDDERAMVRLDMSE
                     YMEKHAVARMIGAPPGYVGYDEGGQLTEAVRRRPYSVVLFDEIEKAHPDVFNVLLQIL
                     DDGRLTDSKGRTVDFKNTVLIMTSNLGSREIQAVQDDEKQVREAVLQELRGHFKPEFL
                     NRIDDIVIFHQLSQAQIGKIIDVQLERLRKMLAERNVTLELDESAKELLMREGYDPTY
                     GARPLKRAIQSFIQNPLAVKLLQGEIVPGQTVRVAAKGDQLEFKTNQAFATA"
     gene            1878..2315
                     /locus_tag="VGD38_19590"
     CDS             1878..2315
                     /locus_tag="VGD38_19590"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEY0730298.1"
                     /translation="MSQQWNPLQDLMVLQDRMNRLFEDATQRRGQTGEDEFERADWTP
                     AADIYETETGFLIALDLPGIKRDALEIDIDDNRLIVKGVRVVDDTRTRRSERPRGKFV
                     RAFAVPASVDQAAIAAEYKDGVLQIRLPKRAEQKAQKIEVKIS"
     gene            2347..2967
                     /locus_tag="VGD38_19595"
     CDS             2347..2967
                     /locus_tag="VGD38_19595"
                     /inference="COORDINATES: protein motif:HMM:NF013212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEY0730299.1"
                     /translation="MGDEAQDELRVTDRRRIHLDQDGTEQVDAEVETPNLKPSYVEEL
                     EARTKAAERQVQEVQSRFDQLRQQLQRETDETRARLNRSADERAEAGKARFIESLLPV
                     MDDLDRALNAAVAEGSSDALLQGIRSIANSFQNALTSAGVEPIASVGEPFNPELHEAV
                     DTEETDPEMDGIVVDEYSRGYRIGDRLLRPSRVKVGRAPASRAVEQ"
     gene            2991..>4293
                     /gene="groL"
                     /locus_tag="VGD38_19600"
     CDS             2991..>4293
                     /gene="groL"
                     /locus_tag="VGD38_19600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006779552.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEY0730300.1"
                     /translation="MPAKELKFREEARNAMLHGVDTLANAVRVTLGPKGRNVVLGKKF
                     GPPVITKDGVTVAKEIELKDKYQNMGAQMVREVAVKTNDKAGDGTTTATILAQAIFRE
                     GVKNVTAGANPMALQRGIQLATEQVVAELERMSKKVKSKEELTNVASVSANNDRALGE
                     LISEAMERVGKDGVVTVEESKTLQTELDIVEGMQFDRGYLSPYFVTNPDRMEAVLEEP
                     YILFYEKKISAMRELIPVLEQTAGAGRALMIIAEDIEGDALATLIVNKLRGTIKVCAV
                     KAPAFGDRRKAILEDLAILTGGKVITEDLGIKLENVTLADLGTAKRVIVDKEATTIVE
                     GGGDRKAIQGRVATLRRQIEESTSDYDREKLQERLAKLAGGVAVVRVGAPTETAMKEI
                     KMRVEDALNATKAAAQEGIVVGGGVALLRASKVLDNHDGDDP"
BASE COUNT         1075 a         1143 c         1338 g          737 t
ORIGIN      
        1 ccggcgccaa gtaccgcggc gagttcgagg accgcctcaa ggccgtgatc aaggaagtcg
       61 aggagagcga aggcgcgatc gtcctcttca tcgacgagct gcacacgctc gtcggcgcgg
      121 gcgctgctga aggcgccatc gacgcgtcga acatgttgaa gccggcgctg gctcgcggcg
      181 aacttcgctg cgtcggcgcg accacgctca acgaatacaa gaaacacatc gaaaaagacg
      241 cggcactcga gcgccgcttt caggtcgtct acgttggcga gccaacagtt gaagacacga
      301 ttgcgatcct gcgcggtttg aaggaacgtt acgaagtcca tcacggcgtg cgcatcaagg
      361 actcggcgat cgtcgccgcc gcgacgcttt caaatcgtta catcacggat cgcttcctgc
      421 cggacaaagc aatcgacctg atcgacgaag cggcctcgcg tctccgcatc gaaatcgact
      481 cgctgccaca ggagatcgat cagctcgaac gcgaaatcat tcaactcgag atcgagcgcc
      541 aggcgctgca acgcgaagac gacgcgaagt ccaaagcccg tttgaaagag atcgaacaac
      601 gcatcgcgga tctgaaagaa aaatcgtcag gcatgaaagc gaagtggcag tctgagaaag
      661 aggccatcga gcacatgcgc aaggcgaaag ccgaactcga acagctcagg ctgcaactcg
      721 atcaggcgcg caacgccggc gatctcgcac gtgcgtcaga aattcagtac ggcaagattc
      781 cggaactgga gcagcgattg aaagccgagc aggagaagct cgcacgtttt cagcaggacg
      841 gcgtgatgct gaaggaagag gtcgacgaag aggacgtcgc cggcatcgtc gccaagtgga
      901 cgggcattcc ggtttcgcga atgctcgaag gcgagatgca gaagctgatc acgatggaag
      961 atcgtttgag ccatcgcgtg atcggccagg aagaagcgct gactgcggtg gccaacgccg
     1021 tgagacgcgc acgcgccgga ctgcaggacc cgaatcgccc gatcggttcg ttcatctttc
     1081 ttggtccaac cggcgtcggt aaaaccgaaa cggcccgcgc gctggcggag tttttattcg
     1141 acgacgagcg cgcgatggtc cggctggata tgtcggagta catggagaag cacgcggtcg
     1201 cacgcatgat cggagcgcct ccgggatacg tcggctacga cgagggcggc cagctcaccg
     1261 aagcggttcg ccggcgtccg tactcggtcg tgcttttcga cgagattgaa aaagcgcacc
     1321 cagacgtttt caacgtgctg ttacagattc ttgacgacgg gcgtttgacg gattcgaaag
     1381 gacgaaccgt cgacttcaag aacaccgtgc tgatcatgac gtcgaacctc ggttcacgtg
     1441 agattcaggc ggtgcaggac gacgagaagc aggtgcgtga agcggtgcta caggaattgc
     1501 gcgggcactt caaaccggaa ttcctgaacc gcattgacga tatcgtgatc ttccatcagc
     1561 tctcgcaagc gcagatcggc aagatcatcg acgttcaact ggagcggctc cgcaagatgc
     1621 tcgcggagcg aaacgtgacc ctggagctcg acgagtccgc gaaggagttg ttgatgcgcg
     1681 aaggttacga tccaacttat ggcgcgcgtc ctttgaagcg ggcgattcag tcgttcattc
     1741 aaaacccgct ggcggtgaaa ctgctgcaag gcgagatcgt gccgggtcaa acggtgagag
     1801 tggcggcgaa aggcgaccag ttggagttca aaaccaacca ggcattcgcg acagcgtaaa
     1861 actttggaga gagaaacatg tcacaacagt ggaatccgct acaggattta atggtattgc
     1921 aggatcgtat gaacagactt ttcgaagacg caacgcagcg gcgcggtcaa accggtgaag
     1981 acgagtttga gcgcgcggat tggacgccgg cggcggacat ttacgaaacc gaaaccggct
     2041 ttttgatcgc gctcgatctc ccgggcatca agcgtgatgc tctcgaaatt gatatcgacg
     2101 acaatcgcct gatcgtcaaa ggtgttcgag tcgtcgacga cacgagaaca cgccgcagtg
     2161 aaagaccacg cggtaagttc gtgcgcgcgt tcgcggtgcc cgcgtcagtc gatcaggcag
     2221 cgatcgcggc cgagtacaag gacggcgtgt tacaaattcg tctgcccaag cgggccgagc
     2281 agaaagcgca aaaaattgaa gttaagatat catgaccgaa acaggaccaa gggggacgta
     2341 gggagcatgg gtgacgaagc acaggacgaa ctgcgcgtta ccgatcgccg tcgcattcac
     2401 ctggaccagg atgggacgga acaagtggac gcagaagtcg aaacaccaaa tctgaaaccc
     2461 tcttacgtgg aggagcttga agcccgcacc aaagcagcgg aaagacaggt gcaggaagta
     2521 cagtcgcgtt tcgatcagtt gcggcagcaa ttgcaacgcg agactgacga aacccgcgcg
     2581 cggttgaatc gttcggctga cgaacgagcg gaagcgggta aagcacgttt tatcgagtcg
     2641 ttgttgccag tgatggacga tctcgatcgc gcgctgaacg ctgctgttgc agaaggttcg
     2701 agtgatgcgc tactgcaagg cattcgcagt attgcgaata gttttcagaa tgcgctgacg
     2761 agcgccggtg tcgagccgat tgcttccgtt ggcgaaccgt tcaatccgga gttgcacgag
     2821 gcggttgaca ctgaggaaac cgatccggaa atggacggaa tcgtggttga cgaatacagc
     2881 cgtggctatc gcatcggcga tcgactgctg cgtccctcgc gtgtaaaggt aggtcgtgcg
     2941 cctgcgagtc gagcagttga acagtagaaa ctgggataag gagacacaga gtgccggcaa
     3001 aagagctgaa gtttagagaa gaagcacgca acgcgatgct tcacggtgtg gatacgctcg
     3061 cgaatgcggt gcgcgtgacg ttgggcccaa agggacgcaa tgtggttctg ggcaagaagt
     3121 ttggaccacc cgtgatcacc aaagacggcg tgacggtcgc caaagagatc gagttaaagg
     3181 acaaatatca aaacatgggc gcgcagatgg tgcgcgaagt cgccgtcaag acgaatgaca
     3241 aagcgggcga cggcacgacc accgcgacga ttctcgccca ggcgatcttt cgcgaaggcg
     3301 taaagaacgt gactgccggc gcaaatccga tggcgttgca gcgcggaatc caactcgcca
     3361 ccgagcaggt tgtcgccgag ctcgaacgca tgtcgaagaa agttaaaagc aaggaagagc
     3421 tgaccaacgt cgccagtgtc tccgccaaca acgatcgtgc cctgggagag ctgatttccg
     3481 aagcgatgga acgcgtcgga aaagacggag tcgtcactgt cgaggagtcg aagacgctgc
     3541 aaaccgagct cgacatcgtc gagggaatgc agtttgaccg cggttatctg tctccgtact
     3601 tcgtcaccaa tcccgatcgc atggaagcgg ttctcgaaga gccgtacatc ctgttttacg
     3661 agaagaagat ctccgccatg cgcgagctga ttccggtgct cgaacagaca gccggagccg
     3721 gacgtgcatt gatgatcatc gccgaagaca tcgaaggcga cgcgctcgcg acgctgatcg
     3781 tcaataagct tcgcggcacg atcaaagtgt gcgccgtgaa agcgccggca ttcggcgatc
     3841 gacgcaaagc gatcctcgaa gatctcgcga ttctcacggg cggcaaagtg atcactgaag
     3901 atctcggaat caaactcgag aacgtgacgc tcgccgatct cggcactgcg aaacgcgtga
     3961 tcgtcgacaa agaagcgacg acaatcgtcg aaggcggcgg cgatcgcaaa gcgatacagg
     4021 gccgtgtcgc gacgttgcgc agacagatcg aagagtccac ttctgactac gaccgcgaga
     4081 aactacagga acgtctggcg aaactcgcgg gcggcgttgc tgtcgtacgt gtcggcgcgc
     4141 cgaccgaaac cgcgatgaaa gagatcaaga tgcgcgttga agacgcactc aacgccacca
     4201 aagccgcggc acaggaaggc attgtcgttg gtggcggtgt cgcgctctta cgcgcgtcga
     4261 aggtgctcga caaccacgat ggtgacgatc cgg
//
LOCUS       DASWTX010001288         2053 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_128784, whole genome shotgun sequence.
ACCESSION   DASWTX010001288 DASWTX010000000
VERSION     DASWTX010001288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2053
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128784"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1390)
                     /locus_tag="VGD38_19605"
     CDS             complement(<1..1390)
                     /locus_tag="VGD38_19605"
                     /inference="COORDINATES: protein motif:HMM:NF014732.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Wzz/FepE/Etk N-terminal domain-containing
                     protein"
                     /protein_id="HEY0730301.1"
                     /translation="MSVQFRQRTPAEYLKILKRRKWLIILPVIAVATAVGYVVYRLPD
                     VYESTTLIVVKPSTLPTSTIPTVAEDGLTRQLSSISQVVSSRSSLEPLIDKYELYLRE
                     RQRGMAMEEVVDMLRDSIRVEVNKTRLDITDGFDIKFRYRDPRVTQAVTSELAGKYVS
                     AQTNDTINSRRAAQEFINNQVKQTKDELDSIDQKRLEFMQSRLGTLPSEAQSLLSQLT
                     GLREQQKSLITEVGRLQDRRSSLSTQLALVQKATANAIDNASEDLTDPRTTPGYAELV
                     KRKTDLQAELRALESQYKPIHPDIIAKKEQIDSVQKSMDSQVEEWKDRIAARQKRLKE
                     SPDLSSAAIQADIKFVDGEIKRQQGLLNDNDKQIALLTERINKVPGSEVELGAIDREY
                     ETKRAAYDKLLSEQQKIALGADAASQQQSEGIEVVDPANLPSKPVAPKRFMLAGIGII
                     AGFGIGLLLVALF"
     gene            complement(1434..>2053)
                     /locus_tag="VGD38_19610"
     CDS             complement(1434..>2053)
                     /locus_tag="VGD38_19610"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0730302.1"
                     /translation="RALELDPAYLPAYSSLAEIFISTNQVDRAIEEYNKILKIRPDNA
                     TVYTLIGMLEDSRQNFDAAIQHYKKALELDQNSVIAANNLAWSYAVNNKGNLDEAVRL
                     AQTVVQRNPNIAGFVDTLGWVYYKKNLYAAAVEQLQKAVALDEAAARASNGTPSATYQ
                     YHLGMALKGKGDKAGSQQALQAALRLSEKRHFPDAEEAKKALATL"
BASE COUNT          375 a          577 c          580 g          521 t
ORIGIN      
        1 caaacagcgc aaccagcagc aacccgatgc cgaatcccgc tatgattccg attccggcga
       61 gcatgaagcg cttcggcgca accggtttcg aaggcaggtt cgccgggtcg acgacttcga
      121 taccttcgct ctgttgctgc gacgcggcgt ccgcacccag ggcaatcttc tgttgttcgg
      181 agagcagctt gtcgtaagcg gctctcttgg tctcgtattc gcgatcgatc gcgccgagct
      241 cgacttccga gccgggcacc ttgttgatgc gctccgttaa cagcgcgatc tgcttgtcgt
      301 tgtcgttgag caagccctgc tggcgcttga tttcgccgtc gacgaatttg atgtccgctt
      361 gaatggccgc ggatgacagg tcgggacttt ctttgagtcg cttctgcctg gcggctatgc
      421 ggtccttcca ctcctcaacc tgcgagtcca tcgacttctg cactgagtcg atctgctctt
      481 ttttcgcaat gatgtccggg tgaattggct tgtactggga ttccaatgcg cgcagttcag
      541 cctgcaggtc ggttttccgt ttcaccaact cggcatagcc cggagtcgtt ctcggatcgg
      601 tcaggtcttc agaggcgtta tcgatggcat ttgcggttgc cttctgcacg agcgctaact
      661 gcgtggatag agaagaacgt cgatcctgta gccggcccac ctcagttatc agcgacttct
      721 gctgttcgcg caatccggtc aactggctca acaacgactg tgcttcggaa ggcagtgtgc
      781 cgagtctcga ctgcatgaac tcgagccgtt tctggtcgat gctgtccagc tcgtctttgg
      841 tctgtttcac ctggttgttg atgaactcct gcgcggccct tctggagttg atcgtgtcgt
      901 tcgtttgtgc gctgacgtac ttgcccgcga gctcagacgt gaccgcctgt gtcacgcgcg
      961 gatcgcgata gcgaaacttg atatcgaaac cgtccgtgat gtcgagacgc gttttgttga
     1021 cttcgacgcg aatggagtcg cgcaacatgt cgacgacttc ttccatcgcc atgccgcgct
     1081 gccgctctct cagatagagc tcgtatttgt cgatgagtgg ttcgagtgaa ctgcggctgc
     1141 tgacgacctg cgagatgctc gacaactggc gcgtcaaacc gtcttcggcg actgtcggga
     1201 tcgtgctcgt ggggagtgtc gaaggcttca cgacgatgag cgtggtcgat tcgtaaacgt
     1261 ccggcagccg gtaaacgaca tagccgaccg ctgtcgccac ggcaatgact ggaagaatga
     1321 tcagccactt gcgtcgcttc agaatcttca ggtattcagc cggggttcgt tgtcgaaatt
     1381 gaacactcat ctttgtactc cttcgttaac cacacaaaca cggattcgat cgatcagagc
     1441 gttgcgagag cttttttcgc ttcttcggca tcagggaaat gacgcttctc gctgagccgc
     1501 aacgcagcct gaagcgcctg ttgcgaacca gctttatcgc cctttccttt caaagccatg
     1561 ccgagatggt actgatatgt tgcgcttggg gttccatttg acgcgcgcgc ggccgcttca
     1621 tccagagcca ctgctttctg caactgttcc accgccgcgg catacaggtt cttcttgtaa
     1681 taaacccagc caagcgtatc gacgaagccg gcaatgttcg gatttcgttg cacgactgtc
     1741 tgagccagac gcaccgcttc gtcgaggttg cctttgttat tgacggcgta actccacgcg
     1801 agattgtttg ccgcgatcac ggagttctga tcgagctcga gagctttctt gtagtgttgg
     1861 atcgcggcgt cgaagttctg gcgcgaatcc tcgagcatgc cgatcaacgt gtagacagtc
     1921 gcgttgtcgg gacgaatctt gaggatcttg ttgtactcct caatcgcgcg atcgacctga
     1981 ttcgtggaga tgaagatctc cgcgagcgac gagtaagccg gcagataagc cggatcgagt
     2041 tccaaggccc ggc
//
LOCUS       DASWTX010001289         3096 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_189147, whole genome shotgun sequence.
ACCESSION   DASWTX010001289 DASWTX010000000
VERSION     DASWTX010001289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3096
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189147"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..379
                     /locus_tag="VGD38_19615"
     CDS             <1..379
                     /locus_tag="VGD38_19615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730303.1"
                     /translation="PDKWQIENKSGSPPAGNELNGLLVKKTNSGYELYGVLGKYTNPP
                     PPAPQNNPPTFNNVSWDGETWNIVFSSLPVGGNGAGTWTLVDSATDAEPTGTGDESGD
                     FTAMASGGHPEEDAEEAASSASA"
     gene            486..>3096
                     /locus_tag="VGD38_19620"
     CDS             486..>3096
                     /locus_tag="VGD38_19620"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0730304.1"
                     /translation="MTHQPHNTPLRLGIVSVVWVSLFVSLAFAQYSLPSLSPGEHELK
                     EKETHSYRLTLSAGQFFYGLVEQKEIDVSIAVFGPGGKQLAETDSPNDRWGTEPVLLV
                     AEESGDYRVDVRAPTGKVAPGRYAIRVVAQREATPADKRLVSGQRLAEEARKLGAEES
                     TAAKRAGIEKYKQAAEIFHELGEKYLEALALRAIATRYVQFSEFRNVFKYAQQGQALA
                     QSLGDRRLEGSLETFLGGASDFLGEVTQALAHYDRAVVLSRANGNRSTEASALNNIGK
                     IYIDASNQQKALEYYLQALPLYQPVTNDLPHAITLNNIGIVYIKLGEPAKALDYLQQA
                     LTKFRAIGARTKSSESVTLSNMGDAYSRLNDTEKALDCYNQARTIQQQIGNKIQEAET
                     LEGLGELYLQLNQPQKALEFHEQAVQLLRAAGNVRREAISLSNLGHVHNVLGRPDQGL
                     DYFNQSLAILRRIGDLNNVAIALEGIARAEQQRGNLIQSRKNIEESLGLIETVRAHTR
                     SQQLRASYLASKDKAYEFYVDVLMQLHEKNPGNGHDADALQASERGRARSLTEMLTEA
                     HVDILQGVSADLVKKEREIRQSLNAKAQRLIQLTAQKGNQQEIETLNKEISALEDEHQ
                     QVQAAIRQTSPQYAALTQPQPLGLKEIQQQLDQNTILLEYALGEERSYVWAVTQSSLK
                     TYVLPKRAEIQQSAEQVYGSLRARSVFKSLETPAQRSARIAQADKEFQQAANELSRMI
                     LAPVAGELGNKRLVIVADGALQYVPFAALSVSSVANPPLIVDHEVISLPSVSAFAVQR
                     ENLANRPLAPKTLAVIADPVFSTNDPRVKANADDADTATRSFEHLPANTVTTGPQLAI
                     PRLPFTRSEADRIL"
BASE COUNT          770 a          868 c          874 g          584 t
ORIGIN      
        1 tccagacaaa tggcaaatcg agaacaagtc cggcagtcca cccgctggta acgagctgaa
       61 tggtcttctg gttaagaaaa caaattccgg ctacgagtta tatggagtgt tgggtaaata
      121 caccaatcct cccccgccgg cgcctcagaa caaccctccg accttcaaca acgtgagttg
      181 ggatggtgag acgtggaaca ttgttttcag cagccttcca gtcggcggta acggcgcggg
      241 aacatggacg cttgtggact cagctaccga cgcggagccg acaggcaccg gcgacgagag
      301 cggcgacttc acggcgatgg cgtcgggagg ccaccccgag gaagacgcgg aggaggctgc
      361 ttcttccgct tccgcgtgag agctgactta accattcgct tagctaacga taacgagtga
      421 ggcgagcgac acgaagagtc gcatctcttc actcgttatc ggcaaccggc aaatcgagca
      481 gcgcaatgac tcaccaaccg cacaacacgc cgcttagact cggaatcgtt tccgtcgtgt
      541 gggtgagtct gttcgtttct ctagccttcg cacagtatag cctcccgagc ctttctcccg
      601 gcgaacacga gctcaaggaa aaagagacgc attcgtaccg gctgactttg agtgccggac
      661 agtttttcta tggtctggtc gagcaaaaag agatcgatgt gtccattgcc gtgttcggac
      721 caggcggcaa gcaactcgcc gaaaccgaca gcccgaatga ccgttgggga acggaaccgg
      781 ttcttcttgt ggccgaggaa tcaggcgatt atcgagttga cgtgcgagcg cccaccggca
      841 aagttgcgcc aggccgatat gcgatccgag tagtggcgca gcgagaggca acgccggccg
      901 acaagcgtct ggttagtggg caacgactcg ccgaggaggc ccgcaaactc ggcgcggagg
      961 agagcactgc cgctaagcgc gcgggcatcg aaaaatataa acaggcagcg gagatctttc
     1021 acgagctagg cgaaaaatac ctggaggcac tagcgctaag agcgatcgcc actcgctacg
     1081 tgcaatttag tgagtttcgc aatgttttca aatacgcgca gcaaggacag gcgttagcgc
     1141 agagtttggg cgaccgcagg ttggaaggct cgctcgagac atttctcggc ggggccagcg
     1201 actttttggg tgaggttacc caggcgttgg cccattacga ccgcgcggtc gtactgtctc
     1261 gcgcgaacgg taaccggtcc acggaagcgt ccgcgttgaa caacatcggc aaaatctata
     1321 ttgacgcctc caatcaacag aaggcgctcg agtattacct tcaggcactg ccgctgtacc
     1381 agccggtcac gaacgatctc ccgcacgcaa tcacgctcaa caatatcgga atcgtttaca
     1441 tcaaactcgg agaaccggcc aaagcgctcg attatctaca gcaggcctta acaaagttcc
     1501 gggccatcgg agcgcggact aagagctcgg agtcagtgac gctgagtaac atgggcgatg
     1561 cgtacagccg cctcaacgac accgaaaaag cgctcgactg ttataaccag gctcggacaa
     1621 tccaacagca gatcggcaat aaaattcagg aagcagaaac cctcgagggg ctgggcgaac
     1681 tttacttaca gttgaaccaa ccgcaaaagg cgctcgagtt tcacgaacaa gcagtccagt
     1741 tactacgcgc cgccggcaac gttcgccgcg aagcgatctc tttgagcaac ctgggccacg
     1801 ttcacaacgt tctgggccgt cccgatcagg gtttggatta cttcaaccaa tcgctcgcga
     1861 tactccgtcg tattggtgat ttgaataatg tcgctattgc cctggagggt atcgcgcgag
     1921 cagagcagca gcgcggaaat ctgattcagt cgagaaaaaa catcgaagag tcgcttggtt
     1981 tgatcgaaac ggttcgcgcc catacccgca gccagcaact ccgcgcgtcc tacctggctt
     2041 ccaaagacaa agcgtacgag ttttatgtcg acgtgctgat gcaactgcac gagaagaatc
     2101 ccggaaacgg ccacgatgct gacgcattac aggcgagcga gcgtgggcgc gcacgcagcc
     2161 tgacggagat gctgactgaa gctcacgtgg atattttgca gggcgtcagc gctgacctgg
     2221 ttaaaaagga acgagagatc cgccagtcgt tgaatgccaa agcacaacga ctgattcagt
     2281 tgactgcgca gaaaggcaat cagcaggaaa ttgaaacgct gaacaaagag atcagcgcgc
     2341 tcgaggacga gcaccagcag gtgcaagcag cgattcgcca aaccagcccg cagtatgccg
     2401 ctctaactca gccgcagcca ctcgggttga aagaaattca gcaacagttg gatcagaata
     2461 cgatactcct ggaatacgcg cttggtgagg aacgaagtta cgtttgggcg gtcacgcaga
     2521 gttcgctcaa gacttacgtt ctgcccaagc gagcggagat tcagcagagt gcggaacagg
     2581 tttatgggtc gcttcgggcg cggagcgttt tcaagtcgtt ggaaacgccc gcgcagcgca
     2641 gtgcgcgcat cgcgcaggcc gataaagaat ttcagcaggc agcaaacgaa ctgagccgga
     2701 tgattctcgc gccggtcgcg ggtgagttgg gaaacaagcg tttagttata gtcgcggacg
     2761 gtgcgcttca gtatgtccca ttcgctgctt tatccgtgtc atccgtggct aacccgcctc
     2821 tcatcgtgga ccacgaagta atcagcttgc cctccgtttc agcattcgct gttcaacgcg
     2881 aaaacctcgc gaaccgtcct ctcgcgccca agacactcgc cgtgatcgcc gacccggtgt
     2941 tctcaaccaa cgatccacga gtgaaggcaa acgcggacga tgctgacacc gcaacaagaa
     3001 gcttcgaaca tcttccggca aacactgtca cgactggacc acaactcgcg attccgcgtc
     3061 tgccattcac gcgctcggaa gcggatcgaa ttctcg
//
LOCUS       DASWTX010001290         1700 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_236996, whole genome shotgun sequence.
ACCESSION   DASWTX010001290 DASWTX010000000
VERSION     DASWTX010001290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236996"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..475
                     /locus_tag="VGD38_19625"
     CDS             <1..475
                     /locus_tag="VGD38_19625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730305.1"
                     /translation="YGDTAVVAFRLVATTQTGETKQVLHLLNCGTFVKRNGKWQVVAW
                     QSTRMPRTEEENTADVRIAVAAFRQALLKADKEKLKAATTSNFVWFQKPGLRVMLNEL
                     ASAELKPFDLQLPTESVWLYGETAMYTGESSTARYTITLTNQSGNWKVAALNTIN"
     gene            complement(479..1288)
                     /locus_tag="VGD38_19630"
     CDS             complement(479..1288)
                     /locus_tag="VGD38_19630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730306.1"
                     /translation="MPVRFQNYSKIFLSLCLILTFCMIEGEAQTRKKRTRRSTARPAP
                     AKPVITNPTIAPPTTPAPAAENVGATGDVKIISTADQQTPEQTEPTETKKPKAAAKSE
                     EPSPEDMQQTINKLSNQVDRLNDKLSQMQDDDRYALDMERLTRAEQRAEQLRMQLIDV
                     QSKTADLEAQLEGIEFALRPENIERATATFGSTRPEEARQARQRQLENERNRVKAQLR
                     ILATSQSRLEVSCANADNEVELLRAKLQQRREQMEINRSNPETRAKKPEQQ"
     gene            complement(1399..>1700)
                     /locus_tag="VGD38_19635"
     CDS             complement(1399..>1700)
                     /locus_tag="VGD38_19635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730307.1"
                     /translation="YFTVNIHHPVYAVAAGLHSGWRGLGVPYEIGPFADHTTHLTLPA
                     AADLFKGLPLEILSEKSNIDEARARARKQPARHMGDRLKRVFFKNALYELVARRI"
BASE COUNT          330 a          477 c          491 g          402 t
ORIGIN      
        1 gtacggcgac acagctgtcg tcgcgtttcg tctcgtggcg acaacgcaaa ccggagaaac
       61 gaaacaagtg ctgcacctgc tgaactgcgg cacgtttgtt aagcgcaacg gaaagtggca
      121 ggtcgtcgcc tggcaatcga cacgcatgcc gcgcacggaa gaagagaaca ctgcggacgt
      181 gagaatcgca gtcgccgctt ttcgtcaggc tctgttgaag gcagacaaag aaaagttgaa
      241 ggcggccacg acgtccaact tcgtgtggtt tcagaagccc ggcctgaggg tcatgctgaa
      301 cgagttggcg tcggcagagc ttaagccctt cgatctgcaa ttaccgacgg agtctgtttg
      361 gctttatggt gagaccgcga tgtatacggg tgagtcgtca acggcacgct acacgatcac
      421 gctgacaaac cagtccggaa actggaaggt cgcagcgcta aacactatca attaagaatt
      481 attgctgctc gggtttcttg gcgcgagtct cggggttcga ccggttgatc tccatctgct
      541 cccggcgctg ttggagtttc gcacgcagga gttccacttc gttatcagca ttcgcgcacg
      601 acacttccag gcgagactga ctggtcgcca gaatcctcaa ctgcgccttc acgcgatttc
      661 tctcgttctc aagttggcgt tgacgtgcct gacgcgcttc ttccggtcgc gtagaaccaa
      721 aagttgctgt cgcgcgttcg atgttctccg gccgcaacgc aaactcgatc ccttcgagct
      781 gtgcctctag atcggcagtc ttgctttgca cgtcgatcaa ctgcatgcgc aactgctcgg
      841 cacgctgttc cgcgcgagtc agccgttcca tgtcgagcgc ataacgatcg tcatcctgca
      901 tctggctcaa cttgtcattc aaacgatcga cctgattcga gagcttgttg atcgtctgct
      961 gcatgtcttc cggagaaggc tcttctgatt tcgcggcagc tttcggtttt ttggtttcag
     1021 tgggttcggt ctgttcgggg gtttgttgat ccgccgtgct gatgatcttt acgtcgccag
     1081 tggccccgac gttttccgcc gccggcgccg gcgtcgtagg cggcgcgatc gtcggattcg
     1141 tgatcacggg cttcgcaggc gcgggcctgg ccgtgctgcg ccgcgttcgc ttcttgcggg
     1201 tctgcgcctc gccttcgatc atacagaagg tgagaatgag acaaaggctg agaaaaattt
     1261 tgctgtagtt ttgaaagcga accggcatcg tcacgctcct tccgtgggtc ttaagataac
     1321 cccgctatcc agatgccatc aagccttagg cagatgcttg gcttccacgt cgggcgaaaa
     1381 ccttcgttcc aaaacctgtt aaatgcgcct ggcgaccagt tcgtaaagcg catttttgaa
     1441 gaaaactcgc ttgaggcgat cgcccatgtg gcgggcgggt tgtttgcgcg cgcgtgcccg
     1501 cgcctcgtcg atattgctct tttcgctaag gatttcgagc ggtaatcctt tgaacagatc
     1561 ggccgcggcc ggtagtgtca ggtgcgtggt gtgatccgca aacggcccga tctcatacgg
     1621 aactccgagc ccgcgccagc ccgaatgcag gcccgccgcg accgcgtaaa ccgggtgatg
     1681 aatgttgacc gtgaaataca
//
LOCUS       DASWTX010001291         2587 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_279133, whole genome shotgun sequence.
ACCESSION   DASWTX010001291 DASWTX010000000
VERSION     DASWTX010001291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2587
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279133"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2587
                     /locus_tag="VGD38_19640"
     CDS             <1..>2587
                     /locus_tag="VGD38_19640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730308.1"
                     /translation="NDCITFQHTNLAPHIYELDDFQVRTPTDIMGQHIHLVKFDVTSS
                     DGAGNGFNYEDGTFAPGEVIERIHAINAGGGLQAFNSTTKTQLTAKPHPFFGTLGAQT
                     TVQRWFADPTLNLAGKDRTLGTVFSHDHFGPSTHQQAGIYSGLVTEPENSIWKHNETG
                     QVLGGRFDGGPTTWQAVIQTQNAADSYREFLLEFADYTLAYKAGGGVNNAGHPIPDPA
                     NAINPPAREEAALPINIEKADECPGGVPLPCPEAVSAADPGTMTVNYRNEPVALRAQD
                     PNTNTQAAGDAGDLSNIYRSDVTRANPDLNVQPGFYPALTGGLQGGDPFTPLMRAYEA
                     DRVQVRILVGAHEESHNFNIHGQKWLYERSDPNSGYRNSQSMGISEHFEFELPGISAV
                     KGNIPFADYLYQPGGSVDNQWNGTWGIMRAYNGGAGLQPDLVPLPNNSDGKVNVNNAS
                     DFSGMCPKTAPSRKLAVTAVAASDVLPGGTLVYNNRTNQGGILHDPTAILYIRSNDID
                     KTTGKLKAGVPVEPLVLRANAGDCVELTLENKLPANLLDLAGWNTLPMIVEGFNANQV
                     KPSNQVGLHPQLVAFDVLSSDGANVGLNVANNIDPITGQPTKQTAAPGQVVKYKWYAG
                     DVRAVGSNLVATPIEFGATNLISSDPIKHSNKGAIASLIIEPQGATWIEDANSRSQAT
                     VSKTDGTSFREFVLQFQTDINLRRGDLQGDAAAVPNVAREEDPEDSGQKALNYRTEPM
                     WKRLGYEPDLPLEQTRAFDYTNSLSNAQVGGDPVTPVFTAKAGTPVRFRVLNSNGHAR
                     NNVFQVHGHIWQQEPYINNSTQIGNNPLSEWKGAQQGHGASNHMDAVPQNGAGGARGI
                     VGDYLY"
BASE COUNT          562 a          821 c          740 g          464 t
ORIGIN      
        1 aacgactgta tcacgttcca gcacaccaac cttgctccac acatttacga gctcgacgac
       61 ttccaggtgc gcacgccgac cgacatcatg ggccagcaca ttcacctggt gaagtttgac
      121 gtgacttctt cagacggcgc gggtaacggt ttcaactacg aagacggcac gttcgctccg
      181 ggcgaagtta tcgagcgcat acatgccatc aacgccggcg gcggtttgca ggccttcaac
      241 agcacgacga agacccagct cacagccaag ccgcacccgt tcttcggcac actcggcgcg
      301 cagacaaccg tgcagcgctg gttcgctgac ccgaccttga acctggcggg caaggatcgc
      361 acgctcggca ctgtcttctc gcacgatcac tttggacctt ctacacacca gcaggccggt
      421 atttattccg gtctcgtgac ggagcctgaa aactccattt ggaaacacaa cgaaaccggc
      481 caggttctcg gcggacgctt cgacggtggt ccaacaacct ggcaggcagt aattcaaacg
      541 cagaacgctg ccgacagcta tcgcgagttt ctgctcgagt ttgctgacta cacactcgct
      601 tacaaagcgg gcggcggcgt caacaacgca ggtcatccga ttcccgatcc ggcgaacgcg
      661 atcaatccgc cggcgagaga agaggctgcg ctgccgatca acatcgagaa ggccgacgag
      721 tgtccgggtg gcgttccgct tccgtgtccg gaagcagtgt ccgctgctga ccccggcacg
      781 atgacggtca actatcgcaa cgagcctgtc gcattgcgcg ctcaggatcc gaatacaaac
      841 acgcaggccg cgggtgacgc gggcgacctt tctaatatct atcggtccga tgtgacccgc
      901 gccaatccgg acctgaacgt tcaacccggg ttctatccgg cgttgaccgg tggtctacag
      961 ggtggcgatc cgttcacgcc gttgatgcgt gcttacgagg ctgaccgagt gcaagtccgc
     1021 attctcgtcg gcgctcacga ggaaagtcac aacttcaaca ttcacggaca gaagtggctc
     1081 tacgagcgca gcgatccgaa ttcgggttac cgcaattcgc agtcgatggg catctccgag
     1141 cacttcgagt tcgagctgcc gggtatctcc gcggtcaagg gcaacatccc gttcgcggat
     1201 tacctgtatc agccgggcgg ttcggtggac aaccagtgga acggcacgtg gggaatcatg
     1261 cgcgcttaca acggcggcgc cggactccag cccgatctcg ttccgttgcc caacaactcg
     1321 gacggtaagg tcaacgtcaa caacgctagt gacttcagcg gcatgtgccc gaagactgcg
     1381 ccgagccgca aactcgccgt gacggcggtt gccgcgagcg atgtcctgcc tggcggtacg
     1441 cttgtctaca acaatcgcac caaccagggc ggcatcctgc acgacccgac cgcgattctc
     1501 tacatccgca gcaacgacat cgacaagacc accggcaagc taaaagccgg cgtccctgtc
     1561 gagccgctcg tgttgagagc caacgccggc gactgcgtcg agctcacgtt ggaaaacaaa
     1621 ctgcccgcga acctgctcga cctcgccggt tggaacacac tgccgatgat cgtcgaaggg
     1681 ttcaacgcga accaggtgaa gccgtccaat caggtcggtc tgcacccgca gcttgttgct
     1741 tttgacgtgc tgtcgagcga tggcgccaac gtcggtctca acgttgcaaa caacatcgac
     1801 ccgatcaccg gccagccgac gaaacagacg gcagcaccgg gccaggtcgt caaatacaag
     1861 tggtacgcag gcgacgtgcg cgcggtcggt tcgaacctcg tggcgacgcc gatcgagttt
     1921 ggcgcgacca acctgatctc gtcagacccg atcaagcact cgaacaaggg cgcgattgct
     1981 tcgctcatca tcgagccgca gggcgcgacc tggattgaag acgcgaactc gcgctcgcag
     2041 gcgaccgtca gcaagaccga cggcacttcg ttccgtgaat tcgtccttca gttccagacc
     2101 gacatcaacc tgcgtcgcgg cgatctgcaa ggcgatgccg cggcggtgcc gaacgtggcg
     2161 agagaagagg atccggaaga ctccggtcag aaggccctca actatcgcac cgagccgatg
     2221 tggaaacggt tgggctacga gcccgatctg ccgctcgagc aaactcgtgc attcgactac
     2281 accaactcgc tgtccaacgc acaggttggc ggcgatcctg tgactcctgt gttcacggcc
     2341 aaagccggaa cgcctgttcg cttccgcgtg ctcaattcga atggccacgc gcgcaacaac
     2401 gtgttccagg ttcacggtca catctggcag caggagccgt acatcaacaa ctcgacccag
     2461 attggcaaca atccgctctc ggagtggaaa ggcgcccagc agggtcatgg cgcgtcgaat
     2521 catatggacg ctgttccgca aaatggtgct ggtggcgcac gaggtatcgt gggcgattac
     2581 ctgtacc
//
LOCUS       DASWTX010001292         2017 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_83123, whole genome shotgun sequence.
ACCESSION   DASWTX010001292 DASWTX010000000
VERSION     DASWTX010001292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2017
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83123"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..567)
                     /locus_tag="VGD38_19645"
     CDS             complement(<1..567)
                     /locus_tag="VGD38_19645"
                     /inference="COORDINATES: protein motif:HMM:NF014427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HEY0730309.1"
                     /translation="MVSISRSLFAIINLTLLAVNALAQGPNPPAAPVVATVQVTVSAK
                     DAEVGQQVKLKAVATDAAGNVVKEQPSSYFAGPFDIAAVDDDGNVRLFGVGQVTVGAI
                     VGGKPGITTFMVKAPGVKTVEITPVKTPLAIGSSMPLEAVARILSGTPRTGAPITWTS
                     DDEQVATVDAGGVVTAVGPGKATITAKSD"
     gene            complement(583..1203)
                     /locus_tag="VGD38_19650"
     CDS             complement(583..1203)
                     /locus_tag="VGD38_19650"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY0730310.1"
                     /translation="MRRIPLLFLLAALAAINVTPQSGRRVTTPASTTPAAPVQPPLRP
                     DPEVRSAPRPLTELMSLPESVRDRTIKAIGADNFRLSDFDGKVIVINLWATWCGPCRR
                     EIPEYERVRKEYSKRDVEFIGLTTEDPRYEGEKVERFLRDVSFGFRLGWADGVMARTL
                     TNGQRSIPQTLVINPEGRIISHWDGYAAGWSGTRLREAIEQALGRE"
     gene            complement(1250..>2017)
                     /locus_tag="VGD38_19655"
     CDS             complement(1250..>2017)
                     /locus_tag="VGD38_19655"
                     /inference="COORDINATES: protein motif:HMM:NF006159.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY0730311.1"
                     /translation="RAETIEETAELIEREGGRAIPVQVDHLEPSQVEALVARIEKEHG
                     RLDVLVNDIWGGDHFIQWNIPVWEHSLENGLRMLRLAIDTHIITNHYALRLLIKNKGG
                     LCVEVTDGTSEYNDDHYRVSLFYDLAKTSVVRMAWSLAQELKPHECTAVALSPGWLRS
                     EQMLDNYGVTEENWRDATKIQPHFVITETPRYVGRAVAHLAADPNVARWNGQSLSSGQ
                     LAKIYNFTDVDGSQPDAWRYVVEVQDPGKPADATGYR"
BASE COUNT          386 a          577 c          598 g          456 t
ORIGIN      
        1 gtccgactta gccgtgatcg tcgctttgcc tggtccaact gcagtcacaa cgccacccgc
       61 gtcaactgtc gccacttgct cgtcgtcgga cgtccacgtg atcggagcgc ccgtgcgtgg
      121 agtgccacta aggatgcgcg caactgcttc gagcggcatg ctgctgccga tggcgagcgg
      181 cgttttcacg ggcgtaatct ctacggtctt gacgcctggc gctttcacca tgaacgtcgt
      241 gatgccgggc ttgccgccga caatcgcgcc gacagtcact tgtccgactc cgaagagtct
      301 gacgttgccg tcgtcgtcca cagccgcgat atcaaacggt cccgcgaagt atgacgacgg
      361 ttgttcttta acgacgtttc cggccgcgtc agtcgcgacc gccttcagct tcacttgttg
      421 tccgacttca gcatctttgg cggagaccgt gacttgaaca gttgcaacca ccggcgcagc
      481 gggcggattc ggaccctggg ccaacgcgtt aactgccaac aatgttaagt tgatgattgc
      541 gaaaagagat ctgctgatag aaaccattaa aacctccacg tgctattcac gtccaagcgc
      601 ttgttcgatt gcttctctca gccgcgtgcc actccaacca gcagcgtagc cgtcccagtg
      661 actgatgatg cggccttcag gattgatgac gagggtttgc gggatggacc tttgtccgtt
      721 tgttaacgtg cgcgccatca cgccatcggc ccagcccagg cgaaaaccga aactaacgtc
      781 gcgcagaaat ctctcgacct tttcgccttc gtaacgagga tcttcagtcg tcagaccgat
      841 gaactcaacg tcgcgcttgg agtattcctt gcgcactctc tcgtactccg gaatctcgcg
      901 gcggcatggt ccacaccacg tcgcccacag attgatgacg atgaccttgc cgtcgaagtc
      961 tgacaagcga aagttgtcgg cgccaatcgc cttgatcgtg cggtcacgca cgctttcagg
     1021 caggctcatc aattcggtga gtggccgcgg cgcggaacgc acttcgggat cgggcctgag
     1081 cggtggttgc acgggcgcgg ctggtgtcgt cgaagctggc gtagtgactc gccttccgga
     1141 ttgtggtgtg acattgattg ccgcaagggc agcgaggagg aagagcaggg gaattcttct
     1201 cataatgttc gagagaataa cgcattttgg gggctttgag cagtctggat cagcgataac
     1261 cggtcgcgtc ggcgggtttg ccggggtcct ggacttcgac gacgtaacgc caggcgtcgg
     1321 gctgtgaacc atctacgtcg gtaaagttat agatctttgc taactgtccg ctggaaagcg
     1381 actggccgtt ccagcgcgcg acgttcgggt ctgcggcgag atgagcaacg gcgcggccga
     1441 cgtaacgcgg cgtttcagtg atgacgaagt gtggctgaat cttcgtggcg tcgcgccagt
     1501 tttcttctgt gacgccgtag ttgtcgagca tctgctcgga acgtaaccaa ccggggctta
     1561 atgcgacagc ggtgcattcg tgcggtttga gttcctgggc cagcgaccac gccattcgaa
     1621 cgactgaggt ctttgcgaga tcgtagaaca gcgaaacgcg atagtggtcg tcgttgtatt
     1681 cgctggttcc gtcagtgacc tcgacgcaga gcccgccctt gtttttaatc aacaaacgaa
     1741 gcgcgtagtg attggtgatg atgtgcgtat cgatggcgag ccgaagcatg cgcaggccgt
     1801 tttcgagcga atgttcccag acgggaatgt tccactggat aaaatgatcg ccgccccaga
     1861 tgtcgttgac gagcacatcg agccgcccat gctccttttc aattcgggcg acgagcgctt
     1921 cgacctgcga cggctcgaga tgatcgactt gcaccgggat cgcgcgtccg ccttcacgtt
     1981 cgatcagttc ggcagtctcc tcgatcgtct ccgcgcg
//
LOCUS       DASWTX010001293         2644 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_40139, whole genome shotgun sequence.
ACCESSION   DASWTX010001293 DASWTX010000000
VERSION     DASWTX010001293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2644
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40139"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..468)
                     /gene="nadD"
                     /locus_tag="VGD38_19660"
     CDS             complement(<1..468)
                     /gene="nadD"
                     /locus_tag="VGD38_19660"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: protein motif:HMM:NF000840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HEY0730312.1"
                     /translation="MPERKRIALYGGTFDPVHLGHLEVARRVSELFEIGKVVFIPAQV
                     APHKVGRPVTEPIHRYAMLALATQDDPRLTISTFELDAPDRRYTVDTVAEFERRLGGD
                     TELFFIMGADSWSEITTWREWERLLRMTNHIVVTRPGYEVAPAPAGLGDRIFFT"
     gene            complement(471..1511)
                     /gene="obgE"
                     /locus_tag="VGD38_19665"
     CDS             complement(471..1511)
                     /gene="obgE"
                     /locus_tag="VGD38_19665"
                     /inference="COORDINATES: protein motif:HMM:NF008954.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEY0730313.1"
                     /translation="MFIDRAKIYVAGGDGGNGVTAFRREKFVPRGGPSGGDGGRGGDV
                     VLVADSSLNTLLHLRYNPRHVADRGLHGEGSNRSGREGADLTVRVPVGTQIFDAETGE
                     LLHDLNRDGDRWLAARGGRGGFGNAHFTTSTNRAPRYHQSGSKGEERELQLELKLLAD
                     VGLVGFPNAGKSTFISTVSAAKPKIADYPFTTLEPHLGVVDLGDFRTFVIADIPGLIE
                     GAHAGAGLGDRFLRHIERTKLLLHLVDVSSLSGRETVADYQTVNHELESYNPDLAKRP
                     QFVVATKIDALDEPERLETLKAQAQADDKPFFAISSATGEGVRELVNAVAAKLDEIAA
                     ATTPPDTVELAL"
     gene            complement(1586..1858)
                     /gene="rpmA"
                     /locus_tag="VGD38_19670"
     CDS             complement(1586..1858)
                     /gene="rpmA"
                     /locus_tag="VGD38_19670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001816392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEY0730314.1"
                     /translation="MAHKKGVGSSRNGRDSQSQRLGLKKFGGEHVLGGNIIARQRGTK
                     WKPGNNVGRGKDDTLFALIEGVVKFEDKGRAGKFVSVYPLEQTAAA"
     gene            complement(1870..2142)
                     /gene="rplU"
                     /locus_tag="VGD38_19675"
     CDS             complement(1870..2142)
                     /gene="rplU"
                     /locus_tag="VGD38_19675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEY0730315.1"
                     /translation="MSHAVIRAGGKQFVVKEGQTIRVPSLEAEAGSSIELETLLTSGE
                     NAAKATVVSHGKDQKIVVFKKKRRKQYKRTRGHRQGYTELKIDSVG"
     gene            complement(2240..>2644)
                     /locus_tag="VGD38_19680"
     CDS             complement(2240..>2644)
                     /locus_tag="VGD38_19680"
                     /inference="COORDINATES: protein motif:HMM:NF014804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl phosphate synthase"
                     /protein_id="HEY0730316.1"
                     /translation="TQDDLLIVGHAIECRINAEDPEKFSPSPGTITAFNLPGGPGVRV
                     DTFVYSGYRVSPFYDSLIAKVIVHARTRELAIARMKRALDVMVVEGIKTTIPLHQKIM
                     DDPKFRKGEIDTNFMEYFLAKNGRKVETAARG"
BASE COUNT          559 a          850 c          688 g          547 t
ORIGIN      
        1 agtgaagaag attcgatcgc cgagacctgc gggcgccggc gcgacttcgt aacccggccg
       61 cgtgacgacg atgtgattcg tcattctcag gagccgttcc cattcgcgcc acgtcgtgat
      121 ctcggaccac gagtcagcgc ccatgatgaa gaacaactcc gtgtcgccgc cgagccgccg
      181 ctcaaactca gcaaccgtgt cgaccgtgta acgccgatcc ggtgcgtcga gctcaaacgt
      241 cgagatcgtc aaccgcggat cgtcctgcgt tgccaacgcc agcatcgcat agcgatgtat
      301 cggctccgtt acaggacgcc cgactttgtg cggcgcgacc tgggccggaa tgaacacgac
      361 tttcccaatc tcaaataact cagaaaccct gcgtgcaact tccagatgcc ctaagtgaac
      421 cggatcgaac gttccgccat acaaggctat gcgtttccgc tcgggcatct ctacaaagcc
      481 agttcaaccg tatccggtgg tgtggttgcc gccgcgatct cgtcgagctt cgctgcaact
      541 gcgttcacca gttcgcgaac gccttcacca gtcgcggacg aaatcgcaaa gaacggtttg
      601 tcgtccgcct gcgcttgggc tttcaaagtc tcgagacgtt ccggctcgtc gagcgcatcg
      661 atcttcgtcg ctactacgaa ctgcggacgc ttcgcgagat ccgggttgta agactcgagc
      721 tcgtgattga ccgtttggta atccgccacc gtttcacgac ctgatagcga agaaacgtcg
      781 accagatgca acaacaactt cgtccgctcg atgtgccgca gaaaccgatc gcccaacccc
      841 gcgcccgcgt gcgcgccttc aatcaaaccg ggaatgtcgg cgatgacaaa cgtccgaaag
      901 tctccgagat cgaccacgcc gaggtgcggt tccaaagtcg tgaacggata gtcagcaatc
      961 ttcggcttcg ccgcggaaac cgtcgagata aacgtcgact tgccggcgtt tggaaaaccc
     1021 acgagaccaa cgtccgcgag caacttcaac tcgagttgca actcgcgctc ttcacctttg
     1081 ctgccactct ggtgataacg cggcgcacga ttggtagacg tcgtgaagtg cgcgttgcca
     1141 aatccaccac gtccgccgcg cgcggccaac caacgatcgc cgtcgcgatt caggtcgtgt
     1201 aacaactcgc cggtctcggc atcaaagatc tgcgttccta ccggaacccg aaccgtcaaa
     1261 tccgcgcctt cgcgtcctga ccggttcgaa ccctcgccat gcaagccacg atcggcaacg
     1321 tgacgcgggt tgtaacgaag atggagcagc gtgttcagcg aagaatccgc gacgaggact
     1381 acatcgccgc cacggccgcc gtcaccacct gatggaccac cacgcgggac aaacttctca
     1441 cgccggaaag cagtaactcc gttacctccg tcaccccccg cgacataaat cttggcccga
     1501 tcaatgaaca tctaaaaatc gaaagcgacg cctggcgtgc agttgaggtg ctgctcaggc
     1561 gtcgcgaact tctaaagtaa cttgtctaag cagcagcagt ttgctccagt ggataaacgc
     1621 tgacgaactt acccgcgcgg cccttgtctt caaacttcac cacgccctca attaacgcga
     1681 aaagcgtgtc gtctttccct cggccgacgt tgttgccggg tttccacttc gtgccgcgct
     1741 ggcgggcgat gatgttgccg ccgagcacgt gttcgccgcc aaatttcttc agacccagac
     1801 gctgcgactg cgagtcgcgg ccgttgcgag atgaacctac acctttttta tgtgccataa
     1861 cctgacctct taaccaactg aatcgatctt cagctctgtg taaccctgac gatgcccgcg
     1921 cgtgcgcttg tactgtttgc ggcgcttctt tttgaaaacg acgatcttct ggtccttgcc
     1981 gtgcgaaaca accgtggcct tcgcggcgtt ctcgccggac gttaaaagcg tttcgagctc
     2041 aatcgagctg ccggcttccg cctcgagcga tgggacacga atcgtctgtc cctctttgac
     2101 cacaaattgt ttgccgccgg ctctgataac tgcgtgtgac atcttctatt taccctctca
     2161 gacgactcat atcgccatag aaaagtcgga cattataagg gaacccaaat acacctagca
     2221 agccgcccgc gctccagttc tagccccgtg ccgcggtttc gaccttccgg ccgttcttcg
     2281 ccaggaaata ctccatgaag ttcgtgtcga tctcgccctt gcggaacttc ggatcgtcca
     2341 tgatcttctg gtgcaatggg atagtcgtct tgatcccctc gacgaccatc acgtccagcg
     2401 cgcgcttcat ccgcgcgatc gccagttcgc gcgttcgcgc atgaacgata accttcgcga
     2461 tcagcgagtc gtagaacggc gaaacccggt agccggaata aacaaacgtg tcgacgcgca
     2521 cgcccggccc gcccggcaag ttgaacgccg tgatcgtgcc cggcgagggc gaaaacttct
     2581 cgggatcctc ggcattgatg cggcactcga tcgcatggcc gacgatcagc agatcgtcct
     2641 gcgt
//
LOCUS       DASWTX010001294         2050 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_210957, whole genome shotgun sequence.
ACCESSION   DASWTX010001294 DASWTX010000000
VERSION     DASWTX010001294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2050)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2050)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2050
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210957"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..500)
                     /locus_tag="VGD38_19685"
     CDS             complement(<1..500)
                     /locus_tag="VGD38_19685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730317.1"
                     /translation="MKTNVKHGERGSALLTVLLLSTLLLGAGSTLILVSAMSTRTAID
                     STAEMQAYYGAEGGLQATLNVLRGNVSPRTGMASHSTMNFRKAVTLSNSNLPSDTSTS
                     ARLSGWLNYDYTPTGAALPDRVTLTSSYAPQNGMAFSVVVEDPDNTPVASGEPERLRL
                     RVTGYGP"
     gene            complement(531..1238)
                     /locus_tag="VGD38_19690"
     CDS             complement(531..1238)
                     /locus_tag="VGD38_19690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEY0730318.1"
                     /translation="MLDRNNKQSGFSLLELIIAMTLTITVMGVASVLLAQALNVRTRT
                     NANNDALADAQRALNIMSREIANSGFNLTGNGIVAGDTGTDANGNSMIRFRANTNKYD
                     ESVSSTARNGIGVIGEDAGEDVKYFVHQASNTNLLARYDEYAQAGGSVTVLANRLDNL
                     HMHYYGQRVTYSTSGCDLTGASASEVSPSEAKYVVIAVCVNLAAVGSPGSSGYQPAKS
                     VLLLSDVALRNSNLTVY"
     gene            complement(1248..1709)
                     /locus_tag="VGD38_19695"
     CDS             complement(1248..1709)
                     /locus_tag="VGD38_19695"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEY0730319.1"
                     /translation="MKNQRKNSQAGFTLLETTVAMVLMAIVGLGIAGLFAYAASSTSN
                     AAEREMASAVAQQQMEQLRSVAFTDSSLAATSTSGTTTTVTRLGRDYSVNTVITDSVV
                     VNSSATLKTITIKVTPQDATAKWSRNVTSIFGSVTLVSTRSALVAGPNRSF"
BASE COUNT          395 a          615 c          598 g          442 t
ORIGIN      
        1 ggaccatagc ccgtcactcg caagcgcaaa cgttccggtt cgccgctcgc caccggcgtg
       61 ttgtcgggat cttccaccac cacactgaac gccatgccgt tttgcggcgc ataactcgac
      121 gtcaacgtga cgcgatcggg aagggcggcg cccgttggcg tgtagtcgta gttgagccaa
      181 ccggacagac gcgcgctggt ggacgtatcc gaaggcagat tggagttgct caacgttaca
      241 gccttgcgaa aattcatcgt cgagtggctc gccattcccg ttctcggcga gacgtttcca
      301 cgcagcacgt tgagcgtcgc ctgtagtccg ccttcagcgc cgtagtacgc ctgcatttcg
      361 gcagtcgagt cgatcgcggt acgcgttgac atcgccgaca cgagaatcaa ggtgctgccg
      421 gcgcccagca acaacgtcga gagcagcaac acagtcaaca acgcggagcc gcgctcgccg
      481 tgcttaacgt ttgttttcaa ccgattcctc aaggcttgca cctcacactt tcagtaaact
      541 gtcagattcg aatttcgcag cgccacgtct gaaagcaaca acacactttt cgccggttga
      601 taacccgaac tgccgggact gccaaccgcg gcgaggttca cgcagactgc aatcacgacg
      661 tatttcgcct cgctcgggct cacctcactc gccgacgcgc ccgtcaaatc acagcctgat
      721 gtgctgtacg taactctctg cccgtagtag tgcatgtgca ggttgtccaa acgattcgcg
      781 agcacggtga cactgccgcc ggcctgcgcg tactcgtcat aacgcgcgag cagattcgtg
      841 ttcgacgcct gatgaacgaa gtacttgacg tcctcaccgg cgtcctcgcc gatcacgccg
      901 atgccgttgc gcgccgtcga actgacggat tcgtcatact tgttcgtgtt cgcgcggaag
      961 cgaatcatgc tgttgccatt cgcgtccgtg ccggtatcgc ccgcgacgat tccgttgccg
     1021 gtgagattga aaccggagtt ggcgatctcg cgtgacatga tgttgagcgc gcgctgcgca
     1081 tcggcaagcg catcgttgtt ggcattcgtg cgcgtgcgaa cgttcagcgc ctgggccagc
     1141 aacaccgacg cgacgcccat caccgtgatc gtcaacgtca tcgcgatgat caactcgagt
     1201 agcgaaaaac cactttgctt gttgtttcta tccaacattg cggctcctca aaatgagcgg
     1261 ttcggaccgg cgaccagggc gcttcgcgtg ctcacgagcg tgacggaacc gaagattgaa
     1321 gtgacgttgc gggaccattt agcagtggcg tcctgcggcg tcactttgat cgtgatcgtc
     1381 ttcagcgtgg cgctggagtt aacgaccact gaatccgtga tgacggtgtt gacgctgtaa
     1441 tcgcggccga gccgcgtcac cgtcgtcgtg gttccggacg ttgaggtggc ggcaagagag
     1501 gaatcggtga atgcaacact gcggagttgt tccatttgct gttgggccac cgcgctggcc
     1561 atctcgcgct ccgctgcgtt cgaggtgctg ctcgccgcgt aagcaaacag cccggcgatg
     1621 cccaagccca cgatggccat gaggaccatc gccaccgtgg tctcgagcag cgtgaagcct
     1681 gcctgtgagt ttttccgttg gtttttcatt ttcattgatc cttctacggc accgttacgg
     1741 tgacagtctg cgaaccgcag gatgaagaca gcgtcaccga tccactctgc ttcttcaccg
     1801 tcacagtaaa actcgcactg tcgattccgc tcaccgtgcg tgaagacggc gagacctgaa
     1861 tctgaccgct gttactggaa gtcgccgtga cggtcgtcgt gccggtgaaa ttgttcagca
     1921 ctgccgcaac cgaacccgat ccgttttgct gaatagtcaa cgagctcggc gacacggtca
     1981 ttgagcacgg tgtcggagac ggagttggag tcggactcgg cgttggtgtc gcggtaggag
     2041 tcggcgtggg
//
LOCUS       DASWTX010001295         4630 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_83183, whole genome shotgun sequence.
ACCESSION   DASWTX010001295 DASWTX010000000
VERSION     DASWTX010001295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4630)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4630)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4630
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83183"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1538
                     /locus_tag="VGD38_19700"
     CDS             <1..1538
                     /locus_tag="VGD38_19700"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEY0730320.1"
                     /translation="EDHTVQGAEAVNTIVGLSAESNDECGVVLTQGNDFYSSPRVSPD
                     GTQLAWLTWNHPNMPWDGCELWVGEFGEDGSLTSTRWVAGGAAESIFQPEWSPDGVLY
                     FASDTNGWWNLHRLSSDNEIESVAQTKGELGMPQWVFGMSSYAFVSAELIACAHVEQG
                     VSTFGTIDTTTGKLKTVDCPFTDIQYVHARNGQVVFRAGSPTDVVSITKYDVNTGAFE
                     TLRRSNDLEVYPRYFSVPRAVEFPTEGGLTAHGFFYPPQNPDYRAPENEKPPLIVKSH
                     GGPTAAASTALSLSIQYWTSRGFAVLDVNYGGSTGYGRQYRERLNKKWGIVDVDDCAN
                     GARYLANRGEVDGTRLVITGGSAGGYTTLCALTFRNTFKAGASHFGVSDAEALARDTH
                     KYESQYLTGLLGPYPERRDIYYERSPINFPERLSCPVIFFQGLEDKVVPPDQAEKMVE
                     AMRAKRLPVAYVAFEGEQHGFRQAKNIKRALDGELYFYSRIFRFELADAVEPVKIENL
                     NVR"
     gene            complement(1535..3907)
                     /locus_tag="VGD38_19705"
     CDS             complement(1535..3907)
                     /locus_tag="VGD38_19705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730321.1"
                     /translation="MNLLRLPLAYLLLISVVAVPVAGQQKRRVPEKTPAKTPAAPAPA
                     TPVTFDTLLSANMFKVYVEVRGVGQLIRSNAATEVLDPILKLGGPPDDFISTVNWLKT
                     HSDQLMTSRMMVAAWPNVSEVPDVVIAIEFSSVDEATKFNTQLNGMLAKVLPPVPAPP
                     SPPEKQTDQQKPATEKAPELVPSYYMQRADSLILISPKPLQLKKLKPKGSKLLAEEPN
                     FRVAYNRFSSEPVFVYVDIAAIQKENEERTQKAIEQYKKDEEARKEAEQKQKAEAEQK
                     IASGEELQLTEEEKAALATFEAKAEASPEVVTELAVKEPTEAEALGSALTGLQGMLFS
                     IMPNIPDAVGVGFSPDSESFDVRLLMIDAPGESSDPIPFFSGLRLGEPVTPESPGVLP
                     SDSDLVIMLALDFPEIYGLMSAFDSPQTYLANAGVVSTGTDKPVIVTQPAALAAPLQT
                     IERITKINVKDELLPLLGSEIAVNMPLGNFNLLGLVIGGPQVQPQDNSKTPPKMPFVV
                     ISLRDREGMRRMMPRILEGFAGKAAAALAQTERREDTELVSIANMFAYAFVGNFLVLS
                     PDAATTRHVVESYLKGETLSSDTAFRNYTRWQPRQVQAQAYLSPAFAESYKSWANSPS
                     ARISDEARALMTRVSTNPQPVSYSLSNDGLGSLHELHVPKSLVITAIASIASTENPPA
                     TVKNERSAMSVLWSISSAQRAYKEEKTGSYASLEELVSANLISTDMLEATGYKFEVRL
                     VPDGFEISAVPAEYGKTGKLSFFMNNVTAMIRGADHGGGPASASDPHIGY"
     gene            complement(4148..>4630)
                     /locus_tag="VGD38_19710"
     CDS             complement(4148..>4630)
                     /locus_tag="VGD38_19710"
                     /inference="COORDINATES: protein motif:HMM:NF036531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730322.1"
                     /translation="EYYTNDENVAARGSSELSVSREYYRLKVMQDGYYLRWSIAPLTG
                     EIRSGDLLVVKLRIQGQAARRLMLEDPIPSGAEQLKAVGALNLDHSQEHWTDWFSSRE
                     FRDRRTVFFLDHFDGDTTFQYAMRVQVPGNFVVAPARVELMYEPWKNANTATGRFTFL
                     "
BASE COUNT          926 a         1323 c         1373 g         1008 t
ORIGIN      
        1 gggaggacca cacggtccag ggcgccgagg cggtcaacac catcgtcggt cttagcgccg
       61 agtcgaacga cgagtgcgga gtggtcctga cccagggaaa cgacttttac tcttcgccgc
      121 gagtcagtcc ggacggaact caactcgcct ggctcacgtg gaaccacccg aacatgccgt
      181 gggacggctg cgaactctgg gttggcgaat tcggcgaaga cggttcgcta acttccacac
      241 gctgggtcgc gggcggcgcg gcggaatcga tctttcagcc cgagtggtcg ccggacggag
      301 ttttgtattt cgcgtcagac acgaacggct ggtggaacct gcaccggctc tcgagcgaca
      361 acgagatcga aagcgtcgcg caaacaaaag gcgagttagg catgccgcag tgggttttcg
      421 gcatgtcgtc ctatgctttt gtctcggcgg aattgatcgc gtgcgcgcac gtcgagcagg
      481 gtgtttcgac gtttggaaca atcgatacca cgacggggaa gttaaagacg gtcgattgtc
      541 cgtttactga cattcaatac gttcatgcac gtaacggtca ggtcgtcttt cgcgcgggct
      601 cgccgaccga cgttgtttcg atcacgaaat acgacgtcaa cacgggcgcg tttgaaacac
      661 tgcgccggtc aaacgatctg gaagtctatc cgcgttactt ttcagtaccg cgcgcggtcg
      721 agttcccaac ggaaggcgga ctcaccgctc acggtttctt ctatccgccg cagaatcccg
      781 actaccgcgc gcccgaaaac gagaagccgc cactgatcgt gaaaagtcac ggtggcccaa
      841 ccgccgcggc gtcaactgcg ttgagtctgt cgattcagta ttggaccagc cgcggattcg
      901 cggtgctcga cgtcaactac ggcggcagca ccggctacgg ccggcagtat cgcgaacgtt
      961 tgaacaagaa gtggggcatc gtcgacgtgg acgattgtgc aaacggcgct cgttatctcg
     1021 cgaaccgcgg cgaagtcgac ggcacacgtc tggtcatcac cggcggcagc gccggtggtt
     1081 acacgactct ctgcgcgttg accttccgca acacgttcaa agccggcgcg agtcacttcg
     1141 gcgtcagcga cgccgaagcc ctggcacgcg acacgcacaa gtatgaatcg cagtatctga
     1201 ccgggctact tggtccatat cctgagcggc gtgatattta ctacgagcgt tcgcccatca
     1261 acttcccgga acgcctgtcg tgtcccgtga tcttcttcca gggtttggaa gacaaagtgg
     1321 tgccgccgga tcaggctgaa aaaatggtgg aggcgatgcg agcgaaacgt cttcccgtgg
     1381 cttacgtcgc ctttgaaggc gagcagcacg gttttcggca ggcgaagaac atcaaacgcg
     1441 cactcgacgg tgagctctac ttctactcac gaatcttccg ctttgaactg gcggatgcgg
     1501 tcgagcccgt gaagatcgaa aatcttaacg tgcgttaata accaatatgc gggtctgaag
     1561 cactcgcggg tccgccgcca tgatcggcgc cgcggatcat cgctgttaca ttgttcatga
     1621 agaacgacag ctttccggtt ttgccatact cggccggaac cgcggaaatc tcaaacccgt
     1681 ccggcaccaa cctgacttca aacttgtaac cggtggcttc cagcatgtct gtcgagatca
     1741 gattcgccga aaccaactcc tcgagcgaag cgtagctgcc ggttttctct tctttgtacg
     1801 cccgctgagc gcttgatatg gaccagagca cgctcatcgc cgagcgttca ttcttcaccg
     1861 tggcgggcgg gttctcggtg ctcgcgatac tggcgatggc cgttatcacc agactcttcg
     1921 ggacgtgcag ttcgtgcagc gagcccaggc cgtcgttgga aagtgaataa gagactggtt
     1981 gcggatttgt actgacgcgt gtcatgagcg cgcgtgcttc atcgctgatg cgcgcgctcg
     2041 ggctgttggc ccagctcttg tagctctcgg caaaagcggg tgacaaatag gcctgtgcct
     2101 gcacctggcg cggttgccag cgagtgtagt ttctgaaagc ggtgtccgag gaaagtgttt
     2161 cgcccttgag atacgactcg actacgtgcc gtgttgtcgc tgcatccggc gagagcacca
     2221 ggaagttgcc gacaaaagca taagcaaaca tgttggcaat cgaaacgagc tccgtgtctt
     2281 cgcggcgttc ggtttgggcc aacgccgccg cggccttacc ggcgaagccc tcgagaatgc
     2341 ggggcatcat tcgccgcata ccttcgcggt cgcgcagcga gataacaacg aacggcattt
     2401 tcggcggggt cttcgaattg tcctgcggct gtacctgtgg tccgccgatc actaaaccga
     2461 gcaggttgaa gttacccagc ggcatgttca cggctatttc cgaacccagc aacggcagca
     2521 actcgtcctt gacgtttatt ttcgtgatgc gctcgatggt ttgcagcggc gctgccagcg
     2581 cggcaggctg cgtgacgata accggtttat ccgtgcccgt ggacacgacg cccgcattag
     2641 cgagatacgt ttgcggcgag tcaaacgcgg acatcaaccc gtagatctca gggaagtcca
     2701 acgccagcat gatgaccaga tcgctgtcac tcggtaagac gccgggcgac tcaggcgtca
     2761 ctggttcacc gagccttagc cccgaaaaga aaggaatcgg gtcgctggat tccccgggcg
     2821 cgtcgatcat cagcaagcgc acgtcgaatg attcactgtc cggtgagaag ccgacgccca
     2881 cggcgtccgg gatattcggc atgatgctga acagcatgcc ttgaagaccg gtcagggcgc
     2941 tgccgagcgc ttcggcctcg gtgggttcct tgactgccag ttcggttacg acttccggcg
     3001 atgcttccgc cttcgcttcg aaagtggcca gtgcggcttt ttcttcctcg gttaactgaa
     3061 gttcctcacc actcgcgatc ttctgttcgg cttcagcttt ctgtttctgt tcggcttctt
     3121 ttcgagcttc ttcatctttc ttgtactgtt cgatcgcttt ctgtgtacgt tcttcgttct
     3181 ccttttggat agcggcgatg tctacgtaga caaacaccgg ctcggagctg aacctgttat
     3241 aggcgacgcg aaagtttggt tcttccgcga gcagtttact gcccttgggc ttcagctttt
     3301 tgagttgcag tggctttggt gaaatcagga tcagggaatc agcgcgttgc atgtaatagc
     3361 tgggcacaag ctccggcgct ttttcggtcg cgggcttttg ctgatcggtt tgcttttcgg
     3421 gcggagacgg cggcgcggga acaggcggga gaaccttcgc cagcatgccg ttcaactgcg
     3481 tattgaattt cgtcgcttcg tcgaccgagg aaaactcgat cgcaatcacc acatcgggaa
     3541 cttccgacac gttgggccag gcagcaacca tcatccgcga cgtcatcaac tgatcggagt
     3601 gcgtcttcaa ccagttaacg gtcgagatga aatcgtctgg tggaccgccg agcttcagga
     3661 tcggatcgag cacttcggtc gcggcgttgg agcggatcaa ctggccgacg ccgcgcactt
     3721 cgacgtagac cttgaacatg ttggccgaga gcagggtatc gaaggtcacg ggcgtagcgg
     3781 gcgccggcgc ggctggcgtt ttcgcgggag ttttttccgg gacgcgccgt ttctgttgac
     3841 ctgcaaccgg gactgcgacg accgagatca gtaataagta agcgagtggg agtcggagga
     3901 gattcatttt gaaatagcct cacctttgcg gcggcgctca catcatagct tcgctgcgcc
     3961 gcctgttgcc agaacttatt tccacgtgca atgcaaatca gatgcgcaac gtcttgtacg
     4021 agtccgtagc gcggcgttgt ttcgagaatt gcgtgttcat tgagcatgga gactggttgc
     4081 ggttcgccga cactcgtccg cggaatgctg cgtacggcag agcacagatc ggaaccgcgg
     4141 agattcatca gagaaacgtg aatcgcccgg tcgccgtgtt cgcgttcttc cacggctcgt
     4201 acatcagctc cacgcgcgcg ggcgcgacga cgaaattgcc gggcacctgc acgcgcatcg
     4261 cgtactggaa cgtcgtgtcg ccgtcgaaat gatcgagaaa gaacaccgtg cggcggtcgc
     4321 gaaactcacg cgagctgaac cagtcggtcc aatgctcctg gctgtggtcg agattcaggg
     4381 cgccaacggc cttgagttgc tcggctcccg acggaatcgg gtcttccaac atcaagcggc
     4441 gagccgcctg gccctgaata cgcagcttca ccacgagcaa atcgcccgaa cgaatctcac
     4501 ctgttaaagg agcaatggac catctcaggt agtagccatc ctgcataacc ttaagccggt
     4561 agtattcgcg gctcacgctg agctcggaag agccacgcgc cgcgacgttc tcgtcgttgg
     4621 tgtaatactc
//
LOCUS       DASWTX010001296         1565 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_40203, whole genome shotgun sequence.
ACCESSION   DASWTX010001296 DASWTX010000000
VERSION     DASWTX010001296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1565
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40203"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1565
                     /locus_tag="VGD38_19715"
     CDS             <1..>1565
                     /locus_tag="VGD38_19715"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0730323.1"
                     /translation="GNHQLKFGVDYRWLAPFSSPAAYRQFAAFSGVNTAPGGALSGVA
                     LLAQSSSFQTNALLSQNFSLFGQDTWKITPRLTITYGMRWDVNPALKGKNSDNDPFTV
                     IGLENPATMTLAPRGTPLYETTYGNIAPRIGVAYQFSGIRNWDAALRAGFGVFYDLGQ
                     GSLGGVSSFFPYIVDKNFSGAPFPLGPQDVAAPALTTNLPAATLLVADPHLKLPRTYQ
                     WNVALEQSIGNNQTISATYVAAIGRELLRVTNLFNVNPNFEFIALTDNSATSDYHALQ
                     IKYQRRLSRGLQALGSYSWSHSIDIASTDAIATNTNTPAQVADINVDRGNSNFDIRHA
                     FSAGVTYDLPSPTSHGTAKAILSGWSIDSFFFARSALPVNIVGGSFFASGTQLAPRPN
                     VIPGVPLEIHGSQFPGGKIFNRAAFTAAPAGTQGNFGRNVLRGFGAWQADVGLQRQFH
                     LSERLRLRFRAEFFNIFNHPNFGNPINVITNPLFGRSTQTLANSLGSGGANGGLNPLY
                     QVGGPRSIQFALK"
BASE COUNT          337 a          495 c          398 g          335 t
ORIGIN      
        1 gggcaatcat caactgaaat tcggcgtcga ctatcgctgg ctggcgccgt tcagcagtcc
       61 ggccgcgtat cgtcaatttg cagcgttctc gggggtcaac accgcgccgg gtggagcact
      121 ttcgggcgtg gcgctactgg cccaatcgag ctcgtttcaa acaaacgcgc tgttgtcgca
      181 aaacttctcg ttgttcggcc aggacacgtg gaagatcaca ccgcgactaa cgatcactta
      241 cggtatgcga tgggacgtca atcccgcgct caagggcaag aacagtgata acgatccgtt
      301 cacggtgatc ggcctcgaga atccagcgac gatgacgctc gcgcctcgcg gcacgccgct
      361 ttacgaaaca acctacggaa acatcgcgcc gcggatcgga gtcgcgtacc agttcagtgg
      421 catacgaaac tgggacgcag cgctgcgcgc agggttcgga gtcttttacg atctcggaca
      481 gggatcactc ggcggtgtat cgagcttttt tccgtacatc gtcgataaga acttttccgg
      541 cgcgccgttt ccgcttggtc ctcaagacgt tgccgcgcct gcgctcacga cgaatctacc
      601 ggccgcgaca ctgctcgtcg ccgatcctca tctgaaactg ccgcgcactt accagtggaa
      661 cgtcgcgctc gagcagtcga tcggaaacaa ccagaccatc tcggccactt acgtcgccgc
      721 gatcggacga gagttgctgc gcgtaacaaa tcttttcaac gtgaatccga attttgagtt
      781 cattgcgctg accgacaact ccgcgacttc cgactaccac gctttacaga tcaagtatca
      841 gcgccgtctc tcgcgtggct tgcaagcgtt gggttcatac tcatggtcgc actcgatcga
      901 catcgcttcg actgatgcga tcgccaccaa caccaacacg ccggcacagg tcgccgacat
      961 caacgtcgat cggggaaatt caaacttcga catccgtcat gcattctccg ccggcgtcac
     1021 atacgatctg ccctcgccaa catcacacgg aactgccaaa gcaatactga gcggctggtc
     1081 gatcgacagt ttcttcttcg cgagatcagc tctcccggtg aatatcgtcg gcggcagttt
     1141 cttcgcttca ggcacgcaac tcgcacctcg cccgaacgtg attcccggtg ttccactcga
     1201 gattcacggc tcgcagtttc ccggtggcaa gatcttcaat cgcgccgcct tcaccgcagc
     1261 acccgccgga actcaaggta atttcggacg caacgtgctg cgaggttttg gcgcatggca
     1321 ggccgacgtc ggattacaac gtcaatttca tctaagcgaa agactgcggc ttcgtttccg
     1381 tgcggaattc ttcaacatct tcaatcaccc aaacttcggc aatcccatca atgtcataac
     1441 caacccgttg ttcggacgct ccactcaaac ccttgcaaac agtctcggtt cgggcggcgc
     1501 aaatggcgga ctcaatcctc tgtaccaggt tggcggacca cgctcgatcc agttcgcact
     1561 caaac
//
LOCUS       DASWTX010001297         1823 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_256090, whole genome shotgun sequence.
ACCESSION   DASWTX010001297 DASWTX010000000
VERSION     DASWTX010001297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1823
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256090"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1228
                     /locus_tag="VGD38_19720"
     CDS             <1..1228
                     /locus_tag="VGD38_19720"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HEY0730324.1"
                     /translation="IAANICLRREPTKGGFLKLLDRTRIYREADALLRKLGLELSSRT
                     PLAQLSIAQQQLVEIARALGAGARIIIMDEPTSSLTLTETRRLLELIKDLKAQNVSII
                     YISHRMHEVQEIADRAVVLRDGKNAGILERSEITHERMVRMMVGRDLKEFFKGATADR
                     AQSSNGNGFIVRRLRTLRYPNHTITFDVAPGEVLGFAGLVGAGRSEVARAIFGVEEAL
                     ETEVSLDGKVLRITEPQHAISHGIYLVPEDRRLSGLIVDFNVRENITLPNLDSYSSAK
                     IINFGRESKVAGEAIKAINIKTPTPEMRAANLSGGNQQKVVLAKWLTFRPRVLIFDEP
                     TRGIDVGAKSEIYELIRNLAAKGVSVIVISSEMEEVLGISDRIAVMHEGRLTGILNRS
                     QFSEEAVMRLATGTEG"
     gene            1235..>1823
                     /locus_tag="VGD38_19725"
     CDS             1235..>1823
                     /locus_tag="VGD38_19725"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0730325.1"
                     /translation="MKKELGIFILLIVLCIIVSVVNPNFLLSNNLQNLARQIGAFGIF
                     SIGLGLVIITGGIELSVGSMMALLGVLMSMMLTEYGYGVTLTVIASIGIAMGLGLGHG
                     LLITRLNMQPFIVTLCGLLFYRGLARFITHDETKGFGAVGFDSLRYLANGNLLGIPMP
                     FILLLIIAAITWVVLHRSVYGRYLFATGRNPEAARY"
BASE COUNT          391 a          531 c          530 g          371 t
ORIGIN      
        1 catcgcggcg aacatctgtc tccgccgcga accaaccaaa ggcggcttct taaaactact
       61 agataggacg cgtatctacc gcgaggcaga tgcgcttctt cgaaaactcg gactggagct
      121 ttccagccgt acgccgttgg cccaactctc gatcgcgcaa caacagctcg tcgagatcgc
      181 gcgggcgctc ggcgcgggcg cgcgcatcat catcatggac gagccgacgt cgagtttgac
      241 gttgaccgaa acccgccgtt tgctcgagct catcaaggat ctcaaggcac agaacgtcag
      301 catcatctac atctcgcatc gcatgcacga agttcaggag atcgcggatc gtgcggtggt
      361 cctgcgtgac ggaaagaacg cgggcatact cgagcgcagc gagatcacgc acgagcgcat
      421 ggtgcgaatg atggttggcc gcgatctgaa agagttcttc aaaggcgcga cggccgacag
      481 agcgcaatcg agcaacggca acggtttcat cgtccggcgg cttcgtacgc ttcgctaccc
      541 gaaccacacg atcacgttcg acgttgctcc gggtgaagtg ctcgggttcg ccggccttgt
      601 cggcgcggga cgatctgaag tcgcgcgcgc gatcttcggc gttgaagaag cgcttgaaac
      661 cgaagtctca ctcgacggta aagtattgcg catcaccgaa ccgcagcacg cgatcagtca
      721 cggcatctat ctcgtccctg aagatcgtcg gctcagcggg ttgattgtcg acttcaacgt
      781 gcgcgagaac atcacgttgc cgaatctcga cagttactcg tccgcaaaga tcatcaactt
      841 cggtagagaa tcgaaagttg ccggcgaggc gatcaaagca atcaacatca agacgccgac
      901 gccggaaatg cgcgccgcga acctgagcgg tggtaaccag cagaaggtcg tgctcgcgaa
      961 gtggctgacg ttccggccgc gcgtgctgat cttcgacgag cccacgcgcg ggatcgacgt
     1021 cggcgcgaaa tcagagatct acgaactcat tcgcaacctg gccgccaaag gcgtgtccgt
     1081 gattgtcatc agcagtgaga tggaagaggt gctcggaatc agcgatcgca tcgccgtgat
     1141 gcacgaaggg cgtttgacgg gaatactcaa ccgctcgcag ttttcggaag aagcagtcat
     1201 gcgcctggcg accggcaccg aaggataacc cgctatgaaa aaagagctcg gcattttcat
     1261 tctgctaatc gttctctgca tcatcgtttc cgtcgtcaac ccaaacttcc tgctgtcgaa
     1321 caacctgcaa aacctcgcgc ggcagatcgg cgcgtttggc atcttcagca tcggcctcgg
     1381 cctggtgatc atcacaggcg gcatcgagtt gtcggtcggt tcgatgatgg cgttgctggg
     1441 tgtgctgatg tcgatgatgc tgactgagta cggctacggc gttacactca cagtgatcgc
     1501 aagcatcggc atcgcgatgg gattggggtt gggccacggg ctactgatca cgcgcctgaa
     1561 catgcagccg ttcatcgtca cactctgcgg cctgctgttc tatcgcggcc tcgcacgctt
     1621 catcacacac gacgagacga agggtttcgg cgcggtaggt tttgattcgt tgcggtatct
     1681 cgcaaacgga aatctgctcg gtattccgat gccctttatc ctgctgctca tcatcgccgc
     1741 gatcacgtgg gtggtgttgc atcgttcagt ctacgggcgt tatctcttcg caaccggacg
     1801 caaccccgaa gcagcgcgct acg
//
LOCUS       DASWTX010001298         2513 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_83211, whole genome shotgun sequence.
ACCESSION   DASWTX010001298 DASWTX010000000
VERSION     DASWTX010001298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2513
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83211"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2513)
                     /locus_tag="VGD38_19730"
     CDS             complement(<1..>2513)
                     /locus_tag="VGD38_19730"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0730326.1"
                     /translation="AGRNTRTRSLLLVVSAASKTSFTRFSRTVQGQLPEGVLGEMSYR
                     MRGPLSEGRFTEAIDGGVRVFVNALAEKIGFNAADLEPASTVAVDTPSTATESPQTVL
                     VSATDVEKTRPRVVADAGRTQDPQPTPTPPTDVPKNEPTPTESPVPEASPTESPKTEP
                     TPAETKTEITELPEAPKKETESTKPPRRNLTAKGSTTVKPTSKKPTTPVEVEDDEETV
                     SLTLVLPVAERVVKLKEFLDTHPESKERPRAIEYLVSAHAAVGDQKLKNGDSVGGIEH
                     LFKAIDAADPATTPDNLFTGVILQIPTNLYLRGERAAAFKAAQSIETKFGAEAKRLPA
                     IASFYLGIERGDEAIRLADNAIQLAPDLAEAHRVKAIGLHLSLRLDEAAEEYKRTLEL
                     DPASKVSRVSLADLYRASGKADQALALYNEQLAADAKDRAARAGKVISLLELSRQDEA
                     NTELEAALKEEPRNLPLLAGAAYWYAAHGDNNKAFDLARRAVAVESRYTWAQIALAHA
                     YLGSKQPLDAERAMRYARQYGKFPTLNYELATVLASMGLYQEAVEVLRESFRVKEGQI
                     HTQLAGRLPASDSNFVDLLAPERRAGIFQARSADKPEHAKLMKALLAFNSAITPAEGE
                     KVDETAAVAAAKEFASGTDNMRAFRQLYAASRLLRNGVGMSTVLELVAAARKASDDAL
                     NAPSLTMAVQADEFRDLRARALASGRIPDVADAPRNVLANILKGRMEDYEGWALFNQE
                     KYTQAIDHLKRATEILPATTPAWRTALWHLGAAHEQTGQDAQALDYYIKSYQGAERDS
                     VKRSIIEQLYRKVNGSTDGLENRLLGIATTATTEAPKAD"
BASE COUNT          406 a          712 c          795 g          600 t
ORIGIN      
        1 gtcggctttg ggcgcctcgg tggttgcagt tgtggcgatt cccaaaagcc ggttttccag
       61 cccgtctgtg gagccgttta ccttgcgata gagctgctcg atgatcgagc gcttcactga
      121 atcacgctcg gcgccctggt aactcttgat gtagtaatcg agcgcctgtg cgtcctgacc
      181 ggtctgttcg tgtgcggcgc cgaggtgcca gagcgcggtg cgccacgcgg gcgtggtcgc
      241 cggcaggatc tcggtcgcgc gtttcagatg atcgatcgcc tgcgtgtact tctcctggtt
      301 gaacagcgcc cagccttcgt aatcttccat ccgccctttc agaatattcg cgagcacgtt
      361 tcgcggcgca tcggcaacgt caggaattct gccggaagcg agtgcgcgtg cgcgcaagtc
      421 tctgaattcg tcggcttgca cggccatggt caacgacggc gcgttgagcg catcgtctga
      481 agcttttcgg gctgcggcaa cgagttcgag cacagtcgac ataccgacgc cgtttcgcaa
      541 caagcgactg gctgcgtaca actggcgaaa cgcgcgcatg ttgtcggtgc cggaagcaaa
      601 ctccttcgct gccgcgacag ccgcggtctc gtcgaccttt tcaccttcag ccggtgtgat
      661 cgcggagttg aaagcaagca gcgctttcat cagttttgcg tgttccggtt tgtcggctga
      721 acgcgcctga aagatccccg cgcggcgttc gggcgccagc aggtcgacaa agttgctatc
      781 actcgcaggg aggcgtccgg ccaattgcgt gtgaatctgt ccttctttga ctcggaacga
      841 ttcacgcagc acttcgacgg cctcctgata aagtcccatc gacgcgagca cggtcgcgag
      901 ttcgtaattt agtgtcggaa acttgccgta ctgccgtgcg taacgcattg cgcgttcggc
      961 gtcgagtggc tgtttcgaac cgagataagc atgggccaac gcgatctgcg cccacgtgta
     1021 acgcgattcg acggcgacgg cgcggcgcgc gagatcgaaa gccttgttgt tgtcgccgtg
     1081 tgcggcgtac cagtaggcgg cgccggcgag taacggcagg ttgcgcggct cttctttgag
     1141 cgcggcttcg agctcggtgt tggcttcgtc ctgacgcgag agttcgagca gtgagatcac
     1201 tttaccggcg cgcgcggcgc gatctttcgc atcggctgcg agctgttcgt tgtagagcgc
     1261 gagcgcctgg tcggctttgc cagacgcgcg ataaagatcc gcaagactga cgcgcgaaac
     1321 tttcgaagcc ggatcgagtt cgagtgttcg tttgtactcc tccgctgctt cgtcgagacg
     1381 cagcgagaga tgcaggccga tagctttcac gcgatgtgct tcagcgagat cgggggcgag
     1441 ctggatcgcg ttgtcggcga ggcggatggc ttcgtcgccg cgttcgatgc ccaggtaaaa
     1501 gctcgcgatt gcgggcaggc gtttcgcctc tgcgccaaac ttcgtctcga tgctttgcgc
     1561 ggctttgaac gccgctgcac gctcaccacg caaataaaga ttggttggaa tttgcaggat
     1621 cacgcccgtg aacaggttgt cgggcgttgt cgccggatcg gctgcgtcga tcgccttgaa
     1681 caagtgttcg ataccgccaa cgctgtcgcc gttcttgagt ttttgatcgc cgacagcagc
     1741 gtgtgcgctg acgagatact cgattgcgcg cggccgttcc ttcgattcag ggtgcgtgtc
     1801 gagaaactct ttcagcttaa ccacgcgttc ggcgacggga agcaccagcg ttagtgaaac
     1861 tgtctcttcg tcgtcttcta cttcaacagg tgttgttggt ttcttcgacg ttggtttgac
     1921 ggtggtgctg cctttggcag tcaggtttct gcgcggcggt tttgtggact cggtttcttt
     1981 tttcggcgct tctggaagct cggttatttc ggttttggtt tcagccggcg ttggctctgt
     2041 cttcgggctc tcggttggag aggcttcggg tacgggtgat tcagttggcg tcggctcgtt
     2101 tttgggaacg tcggtcggcg gtgttggtgt tggttgtgga tcctgcgttc gccccgcgtc
     2161 cgcgacgact cgcggccgtg tcttttcaac gtcagttgcg ctgaccagca ccgtttgcgg
     2221 cgactcggtt gccgtgcttg gtgtatcaac ggcgactgtg gacgcgggct cgaggtccgc
     2281 ggcgttgaaa ccgatcttct cagcgagcgc gtttacaaac acgcgcacac cgccgtcgat
     2341 ggcttccgtg aagcgtccct cgctcaatgg gccacgcatg cgataactca tctcgcccaa
     2401 cacaccctcg ggcaattggc cctggaccgt gcggctaaac ctcgtgaacg aagtcttcga
     2461 agcagcagag acgaccagca acaatgagcg cgtgcgtgtg ttcctgccgg caa
//
LOCUS       DASWTX010001299         1970 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_129128, whole genome shotgun sequence.
ACCESSION   DASWTX010001299 DASWTX010000000
VERSION     DASWTX010001299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1970)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1970)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1970
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129128"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..635)
                     /locus_tag="VGD38_19735"
     CDS             complement(<1..635)
                     /locus_tag="VGD38_19735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730327.1"
                     /translation="MIAESVHNPVAVRDPFSEHWIDVRLISGMRVVLGIAALLVSGLD
                     TVNSGAWSIPAAITLVLYSLYGVYIYQKSARRNPIATHKIIPWLDLLWYIPLITFASS
                     NSLFRYFFFFAITVASFSWGLRDGLRLTLASAGVYVLASLMATTSGAPLNLNQLLMAV
                     IGLLTFGYIIARWGGYHTELKNRLKLLKEVTVFSNPRFGIDRTIKSILESIR"
     gene            complement(655..1230)
                     /locus_tag="VGD38_19740"
     CDS             complement(655..1230)
                     /locus_tag="VGD38_19740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730328.1"
                     /translation="MWKKLFPTLLLLFSGTICAHGQTDAQTEAEPEKISVVLKDARPL
                     VVEEIFESREGYWYKRGNVTTFLDRERVIRIDYPNPLEAAPASGPVQGNVKWRLADAA
                     KIQDFFAARFKRKLPTTAFGQSALHTRWGLDHRNGMDVGLHPDSAEGRALIQFLRQES
                     IPFLAFRGSISGVATGPHIHIGNRSPRVSGR"
     gene            complement(1244..>1970)
                     /locus_tag="VGD38_19745"
     CDS             complement(1244..>1970)
                     /locus_tag="VGD38_19745"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0730329.1"
                     /translation="VARNLDDFRRAAEGFAARLAADDRISLVKFDDRVELIQDWTKSR
                     FQLKRALNRIEPGMFTRFNDALYLTSREQFGPVTKSRRAVIVLSDGIDSGRGTTTLEN
                     ALQSLIQAQVTVYIVSNTEISRASKRAELDSLVGGSASAAQFNQLRIDDLREGLRVLD
                     RSEQNLAQLAQATGGRLYKPLTFDALESTYAEVADELRHQYALYFTPLNKKRDGSFRR
                     VRVETTNPAYQPHTRVGYFAPKT"
BASE COUNT          433 a          543 c          582 g          412 t
ORIGIN      
        1 cgaatacttt cgagaattga tttgatggtc cgatcgatgc cgaagcgagg attggaaaag
       61 actgtcactt ccttcaacag tttgagacgg tttttcagct cggtgtgata accgccccag
      121 cgcgcgatga tgtaaccgaa agtcagcagg ccaatcaccg ccatcaggag ttgattcaaa
      181 ttgagcggcg caccgcttgt agttgccatc agactggcga gcacgtagac accggcggat
      241 gccagcgtca aacgtaatcc atctctgagt ccccaactaa aagaggcaac cgtaatcgcg
      301 aagaagaaga aataacggaa gagactgttg ctgctggcga acgtgatcag cggtatgtac
      361 cacagcagat cgagccacgg gatgatcttg tgtgtggcga tcggattgcg ccgcgctgac
      421 ttctggtaaa tgtagacgcc gtagagcgag tagagcacca gcgtgatggc cgccgggatg
      481 gaccatgcgc cactgttgac tgtgtcgagt cctgaaacga gaagcgcggc aatgccgagc
      541 acgacgcgca tgcccgaaat cagacgcacg tctatccagt gttcggagaa cggatcgcgg
      601 acggcaaccg gattgtgaac agactcggcg atcattgtct ttgaagatcc ctaactaacg
      661 gccggaaact cggggcgatc tgtttccgat gtggatgtga gggccagtgg ccaccccgga
      721 aatggagccg cgaaacgcca ggaagggaat cgactcctgg cgcaaaaact ggatcagcgc
      781 ccggccttca gcgctgtcgg gatgtagccc gacgtccatc ccgttgcgat ggtccaggcc
      841 ccaacgcgtg tgcagggcag attggccaaa cgccgtcgtc ggcagtttcc gtttgaacct
      901 ggctgcgaaa aaatcctgga tcttcgcggc gtctgctaac cgccatttga cgtttccctg
      961 caccgggccg gacgcgggcg cggcttccaa cggattcggg taatcgatgc gtatgacgcg
     1021 ttcgcgatcg agaaacgtcg taacgtttcc gcgcttgtac cagtaaccct cgcgcgactc
     1081 gaagatctct tcaacgacca gtggccgcgc gtctttcagc acgaccgaga tcttttcagg
     1141 ctctgcttca gtttgtgcgt ctgtctgccc gtgggcgcaa atagttccgg agaacagcag
     1201 tagcaatgtt ggaaacagtt tcttccacac gggcggcacg gatctatgtt tttggtgcga
     1261 agtagccaac acgcgtatgc ggttggtaag ccggattagt cgtctcgacg cgcacgcgcc
     1321 gaaaacttcc atcgcgcttt ttgttcagcg gcgtgaagta gagcgcgtat tgatgccgta
     1381 attcgtctgc tacttccgcg taggttgatt cgagcgcgtc gaaggtcaac ggtttgtaca
     1441 aacgcccgcc ggtcgcctga gccagttggg ccaggttctg ttcgctgcgg tcgagcacac
     1501 gcaaaccctc gcgaagatcg tcgatgcgta gttgattgaa ctgcgccgcg ctggctgaac
     1561 cacccacgag ggaatcgagc tcggcgcgtt tgctggcgcg agaaatttca gtgttactga
     1621 cgatgtaaac agttacctgc gcctggatga gcgactgcaa tgcgttttcc agcgtagtcg
     1681 tgccgcggcc actgtcgatg ccgtcagaca gcacgatcac cgcacgccgc gattttgtta
     1741 ccggcccaaa ctgctcgcgc gacgtcagat aaagcgcatc gttgaaacgc gtgaacatgc
     1801 cgggctcgat gcggttcaac gcgcgcttga gttgaaaacg gctcttggtc cagtcctgaa
     1861 tcaactccac acgatcgtca aactttacca ggctgatgcg atcgtcggcc gcaagacgag
     1921 cggcaaagcc ttcggcagcg cggcggaagt cgtcgaggtt tctcgcgact
//
LOCUS       DASWTX010001300         3440 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_40243, whole genome shotgun sequence.
ACCESSION   DASWTX010001300 DASWTX010000000
VERSION     DASWTX010001300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3440)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3440
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40243"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..960
                     /locus_tag="VGD38_19750"
     CDS             <1..960
                     /locus_tag="VGD38_19750"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY0730330.1"
                     /translation="DFFEMQPAIMSPSTALPAPRPIREGFAFENVGFRYPGSDRWAIR
                     NVNFALRPGERLALVGENGAGKTTLTKLLARLYDPTEGRILLDGHDLREYDLASLRQS
                     MGVIFQDFVCYDLHLDENIGVGRIEEVEAYLDEANENQPHSGAAPEGVRPAVPPLNGS
                     GVLHENSSNGNSKIGPPVPAPIIKAAEKSMAASLLPRLPKGYRQMLGRRFAGGVNLSG
                     GEWQKIALARAYIRDAQVLILDEPTAALDARAEYEAFNRFAALVRDRMAVLISHRFST
                     VRMADHIIVLQNGTVVEGGTHEELVAHAGLYAELFKLQAVGYR"
     gene            complement(1226..2140)
                     /locus_tag="VGD38_19755"
     CDS             complement(1226..2140)
                     /locus_tag="VGD38_19755"
                     /inference="COORDINATES: protein motif:HMM:NF023015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diiron oxygenase"
                     /protein_id="HEY0730331.1"
                     /translation="MLTANYNYQETLAASAKANWRIEDIIGGDKRLDFSKPFMPESLA
                     RVESLEFLNEEEKILLNQIRGYGYLYTFGLVEEFILPFVLDHARPHLNEDDYRTRALL
                     QFASEEAKHIHLFRKFAEEFKAGFVTYCETIGPPEEIGKAVLAHSPLGVALVILGIEW
                     MTQQHYLESIRDDEDLDPQFKSLLRHHWMEEAQHTKLDTLMVQALTDNPGTAVIERGM
                     SDYASIGALIDGGIQQQVEFDLQALQRAAGRTFSEPEQEQFRAIQRQALRWTYLGSAM
                     THPQFLRTLGEISPDARTRIEEMAKAFS"
     gene            2317..3291
                     /locus_tag="VGD38_19760"
     CDS             2317..3291
                     /locus_tag="VGD38_19760"
                     /inference="COORDINATES: protein motif:HMM:NF024260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEY0730332.1"
                     /translation="MDPLSEILRGVVLKGALYFNAEFSAPWGFRTPATAELVQVLTPG
                     APHLLIYHFLIEGSGVLRLEDELEIALTAGDVIVVTHGSPHEMCSAVNVAPGLSDRMQ
                     AKLRAHDFTPMHAGGGGDVARFVCGFMVCDPLLCSPILGSLPAAFKVNLRTDRAGQWL
                     ENALLHLVEEANSGRAGTEAVLAKMSEVLFVDTLRRYFAGLPEEDVGWLAAARDPIVG
                     KSLMLLHSRTAHPWTIAELATEVGASRSAFVERFTRYLAEPPMAYLMRWRLQLAARAL
                     GSTSRGVADIAEEVGYESEAAFNRAFKREFGLPPARYRRDQRAAKMLH"
BASE COUNT          662 a          984 c         1019 g          775 t
ORIGIN      
        1 gacttttttg agatgcagcc cgcgatcatg tcaccctcga ccgcgctgcc cgccccgcgt
       61 cctatccgtg aagggtttgc gtttgaaaac gtcggcttcc gctatccggg aagcgaccgt
      121 tgggccatac gcaatgtaaa ctttgccctg cgtcccggcg agcggctggc tcttgtgggt
      181 gagaatggag caggaaagac gaccctcacc aaactccttg cgcgccttta tgacccgact
      241 gaagggcgca tcctgcttga tggtcatgat ctgcgagagt acgacctggc ttcgctaagg
      301 cagtcgatgg gtgtgatctt tcaggatttc gtttgctacg acctgcatct ggacgagaat
      361 atcggggtcg gtcggatcga ggaagtcgaa gcgtacctgg acgaggcgaa tgagaaccaa
      421 ccgcactccg gcgctgcccc agaaggagtc aggccggccg tgccgcccct gaacggaagt
      481 ggcgtgctgc atgagaactc gtcaaatggg aactcgaaga ttggaccgcc ggttccagct
      541 ccgatcatca aggcggccga aaagtcgatg gcggcaagcc tgcttcctcg cttgcccaaa
      601 ggctacagac agatgttggg acgcaggttc gcaggcggcg ttaatttgtc cggtggtgaa
      661 tggcagaaaa tcgccctggc gcgtgcctac attcgcgatg ctcaggtact tattcttgat
      721 gagccgacag ccgcactcga cgcacgcgcc gagtatgaag ccttcaatcg gttcgctgca
      781 ttggtccgcg accgcatggc cgtgttgatc tcacatcgct tctcgaccgt acgcatggcc
      841 gaccacatta tcgttctgca gaacggcacg gtagtggaag gcggcacgca cgaagaactc
      901 gtcgctcatg ccggtttgta cgcggagctg tttaaactgc aggcggtggg atatcgataa
      961 agactgtgga tcgtggcagt ctggtgctgc ccctcgcggt caggcggaag agggtcgatc
     1021 gctctccgcc tgattggata ggcgtttaag ctgcgaacga cataccaacc tcgtacgtgc
     1081 ccggtgtggt gcgaaatgcg atgttgagcc ggttccagcc gttgatttgc tacgacggcc
     1141 aatgtcaggt tcaccacctc tgcttcgctg aaactgcgct cgcggctgcc catgctcgaa
     1201 gcagcacggc ccagcaccga cacgctcagg aaaaggcttt cgccatctct tcgatccggg
     1261 tgcgcgcgtc aggactgatc tcgccgagag tccgcaggaa ttgcgggtgc gtcatcgccg
     1321 aacccaaata ggtccaacgc agcgcttgtc tctgaatcgc gcggaactgc tcctgctcag
     1381 gttcgctgaa agtgcgcccc gcagcgcgtt gtaaggcctg caggtcaaac tcgacttgtt
     1441 gctgaatgcc gccgtcgatc aaagcgccga tggacgcgta gtcactcatg cctctttcga
     1501 tgacggcggt gcccggattg tcggtcaagg cctggaccat cagtgtgtcg agcttggtgt
     1561 gttgcgcttc ttccatccag tgatgacgca gcagactctt gaactgcggg tcgagatctt
     1621 cgtcgtcgcg aatgctttcg agatagtgct gttgcgtcat ccactcgatt ccgagaataa
     1681 cgagcgccac acccaacggg ctgtgggcca ggacggcttt tccaatctcc tcgggtggcc
     1741 caatcgtttc gcaatacgtc acgaagcctg ccttgaactc ttccgcgaat ttcctgaaca
     1801 ggtgaatgtg cttcgcctct tcgctcgcga attgcagcag cgcgcgcgtg cggtagtcgt
     1861 cttcgttcag gtgcggccgt gcgtggtcga gcacgaacgg cagaatgaac tcttcgacca
     1921 agccgaaggt gtagagatag ccgtaaccac gaatctggtt gagcaggatc ttctcctctt
     1981 cgttgagaaa ttccagcgat tcaactcgcg ccagcgactc gggcatgaaa ggcttgctga
     2041 aatccaggcg tttgtcgccg ccgatgatgt cttcaatgcg ccagttggcc tttgcggacg
     2101 ccgccaaagt ttcctggtag ttgtaattag ctgtgagcat gctgtcctcc gttctgtctg
     2161 aatcattgcg gcactgccgc gttaacaaat agaatcttgc gctgcaaccg ctgcgtagac
     2221 catgctcgcg agtccgaaga aattgaccca acgtccagcg agcacgattg cttttgccgc
     2281 aaatccggtt tcctttgccg ttcgtccaga ctcgacatgg atcccctttc tgaaattctt
     2341 cgcggagtgg tgttgaaggg cgcgttgtac ttcaacgcgg agttctcagc gccctgggga
     2401 tttcgcacac cggcgacggc ggaattggtc caggtgctca caccgggcgc gcctcacctg
     2461 ctgatttatc actttctgat tgagggttcg ggagtccttc gtcttgaaga cgaactggaa
     2521 attgcgctga ccgccggcga cgtgatcgtg gtgacacacg gttctcctca cgaaatgtgc
     2581 agcgcggtta acgtcgctcc cgggctttca gacagaatgc aggcgaagct tcgcgcacac
     2641 gatttcaccc cgatgcacgc cggcggtggc ggcgacgtcg cgcgtttcgt ttgcggattc
     2701 atggtttgcg atccgctctt gtgtagcccg attctgggaa gtctgccggc ggcgttcaaa
     2761 gttaacttac gcacggatcg cgcgggtcag tggctcgaga atgcgttgct gcacttggtt
     2821 gaggaagcca attccggcag agcaggcacc gaagccgtgc tggcaaagat gtcagaggtg
     2881 ttgtttgtcg atacgttacg tcgttacttc gcgggcttgc cggaagagga cgttggctgg
     2941 ttggctgcgg ctcgcgatcc gatcgtggga aagagtttaa tgctgctgca ttcgcggacg
     3001 gcgcatccct ggaccatcgc cgaactggcg accgaagtcg gagcatcgcg atccgctttc
     3061 gtcgaacgct tcacccgcta tctcgctgaa ccgccgatgg cttatctcat gcggtggcgg
     3121 ttgcagctcg cagcacgcgc actcggttca acttcgcgcg gcgtcgcgga catcgccgaa
     3181 gaagtcggct acgaatctga agccgcattc aaccgtgcgt tcaagcgcga gtttggtttg
     3241 ccgcccgccc gttatcggcg cgaccaaaga gcggcgaaga tgttgcacta aactttattc
     3301 cgctcggcca ctgccggatc gatgcgaaag tctcgaacac ctttcagtac accaccgtcc
     3361 tttgctgaga gactgatgat atttgagaaa cggcccagct cgccgtgtcg tttcggatct
     3421 tcgacccgca gccgtggatc
//
LOCUS       DASWTX010001301         5913 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_322809, whole genome shotgun sequence.
ACCESSION   DASWTX010001301 DASWTX010000000
VERSION     DASWTX010001301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5913
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322809"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1546
                     /locus_tag="VGD38_19765"
     CDS             <1..1546
                     /locus_tag="VGD38_19765"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY0730333.1"
                     /translation="RTPESEQASHATEARFRQAFENAPIGMAVIDFNFRFRRVNAALC
                     RALDYTPAELLQQRLADITHADDVARGLMLTDQLLRGEIPSYRIEKRFIKRSGDIAWL
                     DVTAVLMRDDDGIPLYGLAMVEDITDRKRSEDALRASEERYRSFVVNSSEGIWRLDVE
                     EPIDVKLPVEEQIGLFYKHGYLAECNDAMARMHGYLRADDVIGLRFGDSKFTSHPANT
                     NVMRKLIAAKYRLLDLETAQFDDEGRTRYFSSNLIGIIVNGMLLRVWGVQRDQTELRT
                     TALKLEHSHQQLRQLSGYLQRLREREKANLSRELHDAIGQALASVKIQAALLRKNIAT
                     TGQIDVDHVTQALDEIGHSLDETIRSVKAISTELRPGVLDKFGLAAAIEWQCEETSRR
                     LKIDCRCSVPQKELNIPSDISTALFRILQEALTNVAVHANADRVDVDLMVTDSTVSLV
                     IADNGRGITVEEIDAPNSLGLLGMRERVEFLKGSFSISGAPGRGTTIKASFNLKPGLH
                     EAIGDL"
     gene            1546..2181
                     /locus_tag="VGD38_19770"
     CDS             1546..2181
                     /locus_tag="VGD38_19770"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0730334.1"
                     /translation="MTNVLIVDDHPIVRRGLKQVLQDEPDFSVLEAGDAREALHEIKA
                     QPVDLVIADIDLPGINGIELLKEIKQQYKNTPVLMLSVYPEDQVAVRVLRAGAAGFLS
                     KETAPEQLVVAIRKILDGGKHISERVADLLVMNLGASSERSMHEKLSDREFQILSLFG
                     EGKTLKQIAESLSLSVPTVSTYRARILDKMEMKSTAELVRYAIQNRLSNPK"
     gene            complement(2484..2630)
                     /locus_tag="VGD38_19775"
     CDS             complement(2484..2630)
                     /locus_tag="VGD38_19775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730335.1"
                     /translation="MILYGQAGYVFGISEATQMLVCIVKATDPEVEKAEIVFDGREIT
                     SVPC"
     gene            complement(3513..4079)
                     /locus_tag="VGD38_19780"
     CDS             complement(3513..4079)
                     /locus_tag="VGD38_19780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730336.1"
                     /translation="MLGRNKKYRAFLPTIALLAVAFIAAPAQAQVSDSESVTMKASVE
                     AIDKTARTLTLKGPRGNLVTLQAGEGFKRFDQLKVGDVVTATYTLAVAARIRKPGDPQ
                     PREVKEALTPLTEKVGAKAYVEQTITVSVEEIDRTAPSVTVKTSDGRVLSFRVKNVAN
                     LKELKVGDTVDITVNLGLLLSVDPPPAG"
     gene            complement(4092..4877)
                     /locus_tag="VGD38_19785"
     CDS             complement(4092..4877)
                     /locus_tag="VGD38_19785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730337.1"
                     /translation="MTKQKLTIVVLFVALVSVSASAQTDSNTTSSSQTSSSEEWEFSV
                     TPYVFFSGLKGTVGVQRQTAVVNARFPDIFRNLDFALMGTFEARKGNWLILTDAMYMS
                     LSGKRVTPSPFFSDIDVEVKQTIIDPEVGYRVVRRERGAIDLLAGVRIWHVKPHLTFQ
                     PRILPLVDVEESKNWADPVVGVRGIANLSPRVFVTGKFDVGGFGVGSDFTGQAFGAAG
                     FQIKPRIALLGGYRYLRADYVSDEGFVYKTTMSGIMLGAKFKL"
     gene            5536..>5913
                     /locus_tag="VGD38_19790"
     CDS             5536..>5913
                     /locus_tag="VGD38_19790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730338.1"
                     /translation="MLYHSAIAACAPLNPRPPALVAQSVQQGFWQQHKWTIILAGGLL
                     TVEGLLIAGLRRERRRRRSTSRSPAEAALIKSEEFNRRIVESTSDCVKVLDLDGNLIY
                     INEQGQKLLEVSRIDAVLGLSWFN"
BASE COUNT         1423 a         1659 c         1578 g         1253 t
ORIGIN      
        1 acgcacgccc gagtccgagc aggcgagtca tgctaccgaa gcccgatttc gccaggcgtt
       61 tgagaatgcg ccgatcggaa tggccgttat cgacttcaac ttccgcttcc ggcgcgtgaa
      121 cgccgcgctc tgccgcgcgc tcgattacac gcccgcggag ttacttcaac aacgcctcgc
      181 cgacatcacg cacgccgacg acgttgcgcg cggccttatg ctcaccgacc aactgttgcg
      241 cggcgagatc ccgagttacc ggatcgaaaa acggttcatc aagcgcagcg gtgacattgc
      301 gtggcttgac gttacggcgg tgctgatgcg tgacgacgac ggtattccac tttacggcct
      361 cgcgatggtg gaagacatca cggatcggaa acgttcggaa gacgccctgc gcgccagcga
      421 agaacgttat cgatcgtttg tcgtgaatag ctcggaagga atctggcgtc tcgacgttga
      481 agagccgata gacgtcaagc ttcccgtcga ggaacaaatc ggtttgttct acaagcacgg
      541 ctatctcgcg gagtgcaacg acgcgatggc gcgcatgcac ggctatctgc gcgccgacga
      601 tgtgatcgga ctgcgtttcg gcgactcgaa gttcacgtcg catccggcga acacgaatgt
      661 gatgcggaaa ctgatcgccg ccaaataccg gctgctcgat ctggagacgg cacagtttga
      721 cgacgagggc agaacccgat acttctccag caacctcatc ggcatcatcg tcaacggcat
      781 gttgcttcgc gtttggggcg tgcagcggga tcaaacggaa ctgagaacga cggccctcaa
      841 gctcgagcac tcgcatcagc agttgcggca actctccggt tatttgcaac gactgcgcga
      901 acgcgaaaag gccaacctct cacgcgagtt acacgacgcg attggacagg cgctcgcgag
      961 cgtcaaaatt caagccgcac tactcagaaa aaacatcgcc acgaccggcc agatcgacgt
     1021 ggaccacgta actcaggcgc tcgacgagat cggtcactcg ctcgacgaaa caatacgctc
     1081 ggtgaaagca atctcaaccg aactgcgccc gggcgtactc gacaaattcg gtcttgcagc
     1141 cgcgatcgag tggcagtgtg aagagacctc acgccgtttg aagatcgact gcaggtgcag
     1201 cgttcctcag aaagaactga acataccttc cgacatatca accgcgcttt tccgtatcct
     1261 tcaagaagcc ttgaccaacg tagccgtaca cgcgaatgcc gacagggtcg acgtcgatct
     1321 catggttacc gattcgacgg tttcgctggt gattgctgac aacggcagag gcataaccgt
     1381 ggaagagatc gacgcgccaa actcactcgg tcttttggga atgcgcgaac gcgtggagtt
     1441 tctcaaaggc tcgttcagta tctcaggcgc gcccggccgc ggcaccacga tcaaggcaag
     1501 cttcaacctc aaacccggcc ttcacgaagc cattggagat ctgtagtgac taatgtcctc
     1561 atcgtcgacg accatccgat agtcaggcgc ggactgaagc aggtgcttca ggatgaaccc
     1621 gacttttcag ttctcgaagc cggcgacgcg cgcgaagccc ttcacgaaat caaagcacag
     1681 cctgtcgatc tcgtgatcgc ggacatcgat ctgccgggca ttaacggtat cgagttgctg
     1741 aaggagatca agcagcaata caaaaacacg ccggtgttga tgttaagcgt gtatccggaa
     1801 gatcaagtgg cggtcagggt gttgcgcgcg ggagccgcgg gattcctgtc gaaagaaacc
     1861 gcgcccgaac aactcgtcgt ggccatcaga aagattctcg acggcggcaa acacatcagc
     1921 gagcgcgtcg cggatttgct ggtcatgaat ctcggcgctt cgagcgaaag gagcatgcac
     1981 gagaagctct ccgatcgcga gtttcagatc ctttcgctct tcggggaagg gaaaaccttg
     2041 aagcagatcg ccgagagttt gtcgttgagc gtgccgaccg tcagcacgta tcgcgcgcgc
     2101 atactcgaca agatggaaat gaaaagcacc gccgaactcg tccgctacgc tattcagaat
     2161 cgcctctcga acccgaagta ggatgccgca cggctcaccc ccaacagaaa ttctcactga
     2221 aggtcggcac tattttcgaa gatagcccgc ttggcttgga caagtggctg accgcgatct
     2281 ggttaatcgc caacgccaag aatgcatctc cagttacgag atacatcgcg ctctaagcgt
     2341 cacacagaaa agcgcgtggt tcatgcttca ccgcatccgt ctcgctcggc aatcgactag
     2401 agaatctcgg cgatgccgaa aggcgcaaag attacattga ccacgcttta atcgaataca
     2461 ccgccgcaag ttatcacttt gaactagcag ggcacagaag ttatctcgcg tccgtcgaaa
     2521 acaatctcgg ctttctctac ttcaggatca gtcgctttga cgatgcacac gagcatctgg
     2581 gtcgcctcgc tgatgccgaa cacgtagccc gcttggccgt acagaatcaa gagcaaagcg
     2641 gcaggcacgg actattagca gaagcactta tcacgcatgg tagggcgttg gcccgattgg
     2701 aaagatatgg cgcgtccctt tcagcccttc ggcgcgcaat cgagttatcg gaaaacgccg
     2761 gaagcatcaa ccgagcgtag caagcatcac atgccgcgtt tcaggagagc ggaaagcact
     2821 tggttgtatc cgagggcggt ccacctatct ccggtcacgg atggggcaaa gacaaacacg
     2881 caaggagaac atgacatgat aaaactcgca ctgatgcaag ccaatggcaa cgtgacccac
     2941 gccgcgcgta atcttggact gttatatccg gccttaaact acatgttgaa tacgagacat
     3001 aaagacttgc tcaattaccg tactccagtg cggaggcgtc cacgaaaaag ctgaaataag
     3061 gcccgtggat cctcgacaga cgtgctgatt gatgacaagc tggtcattca cccaaacaag
     3121 cttcgcctac attgccaaac ttaggaggct agaacagtga ctaaacttag aaagattgca
     3181 cttgcgttaa gaacgatcat tttaatgttt gcactactta ccactgccca attggtatcg
     3241 gccccttcaa aagcggccgg ggattgggac tggggagtgg aatttagaac atggtatttc
     3301 gctgatcctg agcgcacaat atttgttggc tactacgtct acaacacctg tacgggagtg
     3361 gaaactggcg atggcgagca tactgtttac tatgaacaga tatatgacga catatactgt
     3421 ccgggactgc cctagagtta gtaacctcgc gttgctacga tgcgcagcgc agtggtggca
     3481 ttatcagcac gacctgttgc gccaaagccg gttcagccgg ccgggggcgg atcgacgctg
     3541 agaagaagtc ccaggttgac ggtgatatcg actgtgtcac ccaccttgag ctctttcaga
     3601 ttggctacgt tcttgacgcg aaaactcagc acgcgcccgt ccgaagtctt caccgttacc
     3661 gacggcgcgg tccgatcgat ctcttcgact gaaaccgtga tggtttgttc gacgtaggct
     3721 ttagcgccaa ccttttctgt caaaggcgta agagcttctt ttacttccct gggttgcggg
     3781 tcgccgggtt tacggatgcg cgccgcaacg gcgagtgtgt acgtagcagt cactacatcg
     3841 ccaaccttta gctggtcgaa gcgtttgaat ccctcgccgg cttgtaacgt aaccaaattg
     3901 ccccgcggac ctttcaacgt taaggtccgc gcagttttat cgatcgcctc gaccgaggct
     3961 ttcatcgtga ctgactctga atccgaaacc tgcgcttgtg ccggcgcggc aataaaagcc
     4021 acggccagca gcgcgatcgt tggcaggaac gctctatatt ttttatttcg tccgagcatg
     4081 attaactccc cttagagttt gaactttgcc cccagcatga tgccgctcat agtcgtcttg
     4141 taaacgaacc cttcatcgct gacgtaatcg gcgcgcaggt agcgataacc tccgagcagc
     4201 gcgatgcgcg gttttatctg aaaccccgcg gccccgaacg cctgacccgt gaaatccgaa
     4261 cccacgccga agccgccaac atcaaacttg ccggtaacaa aaacacgcgg tgaaagattc
     4321 gcgattcctc taacgccgac caccgggtcc gcccagttct tactttcttc cacgtcgacc
     4381 agcggcaaga ttctcggctg aaaagtgaga tgaggcttaa cgtgccagat acgcacgcct
     4441 gccaacaggt cgatcgctcc gcgttcacgt ctcacgacgc gatatccgac ttcgggatcg
     4501 atgatagttt gcttcacctc gacgtcgatg tctgaaaaga acggactcgg cgtcaccctt
     4561 ttccctgaca gcgacatgta catggcgtct gtcaggatca gccagtttcc tttgcgggct
     4621 tcaaacgtgc ccatcaacgc aaagtcgagg ttgcgaaaga tgtccgggaa cctcgcgttt
     4681 accaccgcgg tttgccgctg tactccgaca gtgcctttaa ggccggaaaa gaaaacataa
     4741 ggcgttactg aaaactccca ctcctcagac gacgaggtct gagaactact ggtcgtgttg
     4801 ctgtctgttt gcgcagacgc tgaaacggac acgagtgcga cgaacagaac tacgatcgta
     4861 agtttttgtt tggtcatgaa tttagcttcc gttaaccggg gctgggtttc ttgtgtcagg
     4921 tgcggttttt cacgtctcgt atggaccaca ggcgacgccg ccccgcgcag ttccagtacg
     4981 cggacttagg cagcccaccc gccggcattg cctcatggtc catacgaaac atgaaaacgc
     5041 gcccattcac gaagttcgaa atgagttaga aagcttcgtc gcaagtgcgg caaaaaggaa
     5101 cacggttcca agaagacaaa taacgatatt cactgttgag cacccatttc ggatacgaaa
     5161 gactatgtag gtttggggaa gatgtcacct agtaaaaata cgggttgtcg agatctcaag
     5221 tagagcgtac actgcgcata gtttttcaga acttcgcaac cgacataagc ttttagatcc
     5281 gcatcaggtg agccgattcc actcccacgt ttggagtctc agaccggagc agacgcagcg
     5341 gtatctgctc aacgacaata agcccagaac ctgaagtccc cctggggctg ccggcaggta
     5401 cagtgcgggt gccgaggcag cataggtatc gagggcgtgt ggttcgcccc tgcggcccac
     5461 cgatcaattc gcacaatcgc atatatgaga tgtaactcgt cgcatctctc tcgtccccta
     5521 tttgcgatag tggtattgct ataccactca gcaattgcgg cgtgcgcgcc tcttaatccg
     5581 cggccgccgg ctctagttgc gcaatccgta cagcaaggtt tctggcagca acataaatgg
     5641 accatcattc tcgccggcgg gttactcaca gttgagggtt tgttgattgc tggtttgcgt
     5701 cgtgagcgtc gccgcagaag atctacctct cgatcgccgg ctgaagcagc tttgatcaag
     5761 agtgaagagt tcaaccggcg catcgttgaa agcacctccg attgcgtaaa ggttctggac
     5821 ctcgacggca atctcatcta catcaacgaa cagggacaaa aactcctcga ggtcagccgc
     5881 atcgatgcag tgctgggatt gtcgtggttt aac
//
LOCUS       DASWTX010001302         6057 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_237311, whole genome shotgun sequence.
ACCESSION   DASWTX010001302 DASWTX010000000
VERSION     DASWTX010001302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6057
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237311"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..544)
                     /locus_tag="VGD38_19795"
     CDS             complement(<1..544)
                     /locus_tag="VGD38_19795"
                     /inference="COORDINATES: protein motif:HMM:NF013738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein"
                     /protein_id="HEY0730339.1"
                     /translation="MPVLPEVATDHFFNPRNVGDADEPSFVGRAASLICGAHVRFSIQ
                     VDENQRVSQARFKAAGCSVLVASTSMLTERVVNVPTAEAAIIGQDRGALAECFSEVES
                     GREHCPKLACDALLAAIREYSDAARDDWSGDEALICTCFFVSERTIEREITSRGLTSV
                     AEVTRACNAGGGCGSCHQLIQ"
     gene            617..1699
                     /locus_tag="VGD38_19800"
     CDS             617..1699
                     /locus_tag="VGD38_19800"
                     /inference="COORDINATES: protein motif:HMM:NF022077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140663 - ATP-dependent FeS chaperone
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HEY0730340.1"
                     /translation="MTTLNEQLILDSLRQIKDPDLHKDIVTLGFVRDIKIDGGNVSFR
                     IVLTTPACPVKAEMESAAKEIVSGLPGVTSVSVTMDAEVPKGRGLGEKVTIPGVKNIV
                     AVSSGKGGVGKSTVAVNLAVSLALDGARVGLMDADVYGPNVPIMLGASEARPEVDVNK
                     LVPIEAFGVKFMSMALLQPGDKPMIVRGPILHGLVKQFLSDVKWGELDYLIVDMPPGT
                     GDVQLSLAQLVPVQGAVLVTTPQQVAVADVRRALRMFETVAIPVLGIVENMSYFIAPD
                     TGIRYNIFGEGGGQSLAVRYSVPFLGAVPLGIEVREGGDKGVPVVVSHPESPQAQAFR
                     KVSEEVARQVSIEAMKPELVVLGKGQ"
     gene            1738..2094
                     /gene="erpA"
                     /locus_tag="VGD38_19805"
     CDS             1738..2094
                     /gene="erpA"
                     /locus_tag="VGD38_19805"
                     /inference="COORDINATES: protein motif:HMM:NF010147.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HEY0730341.1"
                     /translation="MSATTAPTVTLNVTESAATEIKKFMAGEEDLPATSGLRVRVVPG
                     GCSGFQYSLNIEEQSREGDFILDQHGVRMFVDMFSAQYLNGVEIDYVTGVMGSGFTFK
                     NPNATGSCGCGSSFTA"
     gene            2170..2649
                     /locus_tag="VGD38_19810"
     CDS             2170..2649
                     /locus_tag="VGD38_19810"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY0730342.1"
                     /translation="MRITQATTPSDIEQARELFKEYEASLGISLCFQNFADELANLPG
                     EYAPPRGRLLLAREFDQLVGCVALRPVGPTTCEMKRLFLRDAYRSRGLGRVLVEAIIE
                     EARKIGYTHMRLDTMSDRMGRAIELYKSIGFVEIEPYYNSPVDTTKFMELDLVSTKH"
     gene            2677..3012
                     /locus_tag="VGD38_19815"
     CDS             2677..3012
                     /locus_tag="VGD38_19815"
                     /inference="COORDINATES: protein motif:HMM:NF012339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEY0730343.1"
                     /translation="MPKIQAETATGLVETDAPAGKKLVLALEDAGVDILHRCGGNARC
                     TTCRVEVLEGDPGEMQDLERNRLAVEAELAANIRLSCQIHVQNDLKVRVVNQASVRGM
                     DPGPRPSDE"
     gene            3111..3911
                     /locus_tag="VGD38_19820"
     CDS             3111..3911
                     /locus_tag="VGD38_19820"
                     /inference="COORDINATES: protein motif:HMM:NF017945.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urate hydroxylase PuuD"
                     /protein_id="HEY0730344.1"
                     /translation="MLIESTAHLPISLALFDVPFNSPDGAELARIILRWGHFVAGITW
                     IGLLYFFNLVNVPVQKSLDADTKKKVNPDLLGRALWYFRWGAVATVFVGLMYYAMYIL
                     PPDANNALALGGVRPNIWYILGIWILYPIVLFAIEFLIIKKVPALIKDGRIFAIVMFV
                     LVAIFTYGLIAFFTSAMTVGTESYASNKTYSIGIGGAYGVLMMLNVWGIIWPNNKRIL
                     AATAGTGPAAAPELARQAFIASRTNAWLSLPMLLFMGTSHGDWVILGK"
     gene            4001..4639
                     /locus_tag="VGD38_19825"
     CDS             4001..4639
                     /locus_tag="VGD38_19825"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF014796.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HEY0730345.1"
                     /translation="MSSTASYQARQFDLSGLKGISDETLEMHFKLYEGYVKETNNLTE
                     RISEFIKDGNVDQEELPAYSELTRRLGFEYNGMVLHEYYFENLIKGSGTGDPDRTSQF
                     AKAAEASFGSYEIWKADFVGIGKMRGVGWAICYQNPSNGRLSNHWITLHEIGNVAGFT
                     PILVMDVWEHAYLLDYKPAERPKYIEAFFSNIAWGELERRLQKNSGVQTARV"
     gene            complement(4649..5704)
                     /locus_tag="VGD38_19830"
     CDS             complement(4649..5704)
                     /locus_tag="VGD38_19830"
                     /EC_number="1.11.1.5"
                     /inference="COORDINATES: protein motif:HMM:NF015131.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c peroxidase"
                     /protein_id="HEY0730346.1"
                     /translation="MNTRKLFFALGPCLVLVAVVLINACSSNVRESAGGFTPEIQPLP
                     AGLSTYEAMVIPADNPMTPEKVALGRQLFFDERLSADGSRSCYTCHVCEKGLTDGLPK
                     AVGALNKQLPRSSPTLWNIGYHKEFYWDGRSPSLEKQALAAWTGANMSAKADEIVAKL
                     NALEGYKTQFQKVFQSDATPDNVVKAIAAYERTIISGNTAWDRWRAGDQQAISQSAWR
                     GWHIFQAIKCNNCHDGVLFTDQQYHNVGIGMDQKEPDGGRANATKKPEDTGAFKTPTL
                     RDIAKSAPYFHDGSAQTLEEAVDIMLAGGKPNQYLDTKNLQPHKLLPEQREDLLNFLR
                     SLTVDDCNLTKPPLPQK"
     gene            5769..>6057
                     /locus_tag="VGD38_19835"
     CDS             5769..>6057
                     /locus_tag="VGD38_19835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730347.1"
                     /translation="MRNFRKAVLLAVVLFFTACGSENDGEHTTTTVVVPPPAQQVLRA
                     ETRPSPKIPAKPGDPKLKVDPSKPLLIFNLPNGKTFRQGEEVVIDFSLATAT"
BASE COUNT         1301 a         1763 c         1723 g         1270 t
ORIGIN      
        1 cctggattag ttgatgacac gaaccgcagc cgccgcctgc gttgcacgcg cgcgtgacct
       61 cggcgacgct cgtaaggccg cggctcgtaa tctcgcgttc gatcgtgcgt tcagaaacaa
      121 aaaagcatgt gcagatcagc gcctcgtcgc cgctccaatc gtcgcgcgcg gcgtcgctgt
      181 actcgcgaat cgcagccagc aacgcgtcgc atgcgagctt cggacagtgc tctcttcctg
      241 attcaacttc ggagaagcac tctgccagtg cgccccgatc ctgcccgatg atggcggctt
      301 cggcagtcgg gacattcaca acccgttcgg tgagcattga agtcgacgcc acgagcacac
      361 tacaacccgc cgctttaaac ctcgcctgag aaaccctttg attttcatca acctgaatcg
      421 aaaaccgcac gtgcgccccg caaatcaacg atgccgcacg accaacaaaa ctcggctcgt
      481 ccgcatctcc tacatttcgc gggttgaaga aatgatccgt agctacttcg ggcaaaactg
      541 gcactgactg ctgaaactac ctatggtgtt gtcgtttgtc aaaaactcac gaaatcagct
      601 acgcttccga taccgtatga caacactcaa cgaacagcta attctcgata gtctgcgcca
      661 gatcaaggat cccgatctac ataaggacat cgtcactctc ggcttcgtcc gcgacatcaa
      721 aatcgacggc ggtaacgtgt cgtttcgcat cgtgctgacg acgcccgcgt gcccggtcaa
      781 agccgaaatg gaaagcgccg cgaaagagat cgtcagcggc ttgccgggcg tgacgtccgt
      841 ttccgtaacg atggacgccg aagtgcccaa aggccgcggc ctcggcgaga aagtcaccat
      901 tccgggcgtt aaaaacatcg tcgccgtctc atccggcaag gggggcgtgg gcaaatcgac
      961 ggtcgcggtg aacctcgcgg tctcgctcgc gctcgacggc gcccgcgtcg gactgatgga
     1021 cgcagacgtt tacggcccga acgtgccgat catgctcggc gccagcgaag cgcggccgga
     1081 agtcgacgta aacaagctcg ttccaatcga agcattcggc gtgaagttca tgtcaatggc
     1141 gctgctccag cccggcgaca aaccgatgat cgtccgcggc ccgatcctgc acggcctggt
     1201 caaacaattc ctgtccgacg tgaagtgggg cgagctcgac tacctgatcg tcgacatgcc
     1261 tccgggaaca ggcgacgtgc agttgtcact cgcgcaactc gttccggttc agggcgctgt
     1321 gctcgtcacg acgccccagc aagtcgcagt cgccgacgtt cgccgcgcgc tcagaatgtt
     1381 tgaaaccgtc gcgattccag tgctcggaat tgtcgaaaac atgagctact tcatcgcgcc
     1441 tgacaccggc attcgttaca acatcttcgg cgaaggcggc ggccagtcac tcgccgtgcg
     1501 ctacagcgtg ccgttcctcg gcgcggtgcc gctgggcatc gaagtacgcg aaggcggcga
     1561 caaaggcgtg ccggtggtcg taagccatcc cgagtcgccg caggcgcagg cgttccgcaa
     1621 agtgtcggaa gaagtggcgc gccaggtctc aatcgaggcg atgaaacccg aacttgtcgt
     1681 tttgggaaaa gggcaataag ataggcaccg agagtattta tataaagagg atagatcatg
     1741 tcagcaacca cagcgccaac cgtaacactc aacgttaccg agtcagcggc aactgagatc
     1801 aagaagttta tggccggcga agaagattta cccgcaacct cgggtctccg cgtgcgggtc
     1861 gtgccgggcg gctgctccgg tttccaatac agccttaaca tcgaagagca gtcacgcgaa
     1921 ggcgatttca ttctcgacca gcatggcgtg cgcatgtttg tcgacatgtt cagcgcgcag
     1981 tacctgaacg gcgtcgaaat tgactacgta accggcgtga tgggctctgg ctttacgttc
     2041 aagaacccga acgcgaccgg tagctgcggc tgcggctctt cgtttaccgc gtaacacgca
     2101 caacagcgac agattcttac gggagacggg agcaattctc gtctcccgtt tcttttggtt
     2161 ttacacgtgt tgcgaatcac tcaagccacg accccaagcg acatcgagca ggcccgcgag
     2221 ctcttcaaag agtatgaagc gagcctcggg atcagcttgt gctttcaaaa cttcgccgac
     2281 gaactcgcca acctcccggg cgagtacgcg ccgccgcgcg ggcgtttgct actcgcgcga
     2341 gaattcgatc aactcgtcgg ttgcgtcgct ttgcggccgg ttggcccaac gacctgcgaa
     2401 atgaagcggc tgtttctgcg ggacgcgtat cgcagccgcg gcctgggccg ggttctggtc
     2461 gaagcgatta tcgaagaggc gcgaaagatt ggttacacgc acatgcgact cgacacgatg
     2521 tcagaccgca tgggccgcgc gatcgagctt tataaatcta ttggtttcgt tgaaattgag
     2581 ccgtactata acagcccagt tgacacgacg aaatttatgg agcttgatct agtctccacg
     2641 aagcactaga aaccatcatc tcgggagcaa acgtacatgc cgaagatcca agcggaaact
     2701 gctactggtc tggttgaaac tgacgcaccg gccgggaaga aactcgtcct ggcacttgaa
     2761 gacgctggtg tcgacatact tcaccgttgc ggcggcaacg cgcgctgcac gacctgccgc
     2821 gtcgaagtcc tcgaaggaga tccgggcgaa atgcaggacc tcgaacgaaa ccgtctcgcc
     2881 gtcgaagccg agctcgcggc gaacattcgc ttgtcgtgtc agattcacgt gcagaacgat
     2941 ctgaaagtgc gcgtcgtgaa ccaggcgagc gtccgcggca tggatcccgg accacggccg
     3001 tcggacgaat agggccacgt tattgcgtcg cggttggtct gggtgtaatc ttcacgcgta
     3061 attccaggcg acattacaca gaacaaacgc agctacatca cggaggactt atgttaattg
     3121 agtcaactgc tcatctcccc atcagtctgg ctttgtttga cgtacctttc aacagccctg
     3181 acggcgccga actggcgcgc atcatcctgc gctggggaca tttcgttgcc ggcatcacct
     3241 ggatcggcct gctctacttc ttcaatctcg taaacgttcc ggtccagaag tcgctcgacg
     3301 ctgacacgaa gaaaaaagtg aacccggatc tgctgggccg cgcgctctgg tacttccgct
     3361 ggggcgccgt tgcaaccgtg tttgttggtc tgatgtacta tgcgatgtat atcctgccgc
     3421 ctgatgccaa taacgctttg gcgctcggcg gcgtcagacc aaacatctgg tacatactcg
     3481 gaatctggat cctgtatccg atcgttcttt tcgccatcga gtttctgatc atcaagaagg
     3541 tgccggcgct aattaaagac ggccgcatct tcgcgatcgt gatgtttgtg ctggtggcta
     3601 tctttactta cggattgatc gctttcttca cgtcggcaat gactgtcggc accgaaagct
     3661 acgccagcaa caaaacctac tcgatcggca tcggcggcgc gtacggcgtc ctgatgatgc
     3721 tgaacgtttg gggcattatc tggcccaaca acaaacgcat tctcgccgcc accgcgggca
     3781 ccggtcccgc cgcggcgccc gaactcgcgc gccaggcatt catcgcgtcg cgaacaaacg
     3841 catggctctc gttgccgatg ctgctgttca tgggaacgtc gcacggcgac tgggtgattc
     3901 tcggcaagta acgtagttta ataggtcctg taggtcgggg tgatctacag gacctttttc
     3961 tttttaatgt aatgagagct aaccatggga gggtagaaag atgagttcaa ccgcaagtta
     4021 tcaagcacgc cagttcgacc ttagcggcct caagggaatc tccgacgaaa ctctggaaat
     4081 gcacttcaaa ctctacgaag gctacgtcaa agaaaccaac aacctaaccg aacgcatcag
     4141 cgaattcatt aaagacggca acgtcgatca ggaagaacta ccggcttatt ccgaactcac
     4201 gcgcaggctc ggcttcgaat acaacggcat ggtgctgcac gaatactatt tcgagaacct
     4261 gatcaagggc agcggcaccg gcgatccgga ccggacgtcg cagtttgcga aagcggcgga
     4321 agcgtcgttt ggcagttatg aaatctggaa ggctgacttc gtcggcatcg gcaagatgcg
     4381 cggtgtgggt tgggccatct gctaccagaa cccgtcgaat ggaaggctat cgaatcactg
     4441 gatcacgctg cacgaaatcg gcaacgtcgc cgggttcacg ccgatcctgg tgatggacgt
     4501 gtgggagcac gcgtacttgc tcgattacaa accggctgag cggccgaagt acatcgaggc
     4561 gttcttctcg aacatcgcgt ggggcgaact cgagagaaga ttacagaaga acagcggcgt
     4621 gcaaaccgcc cgcgtttgaa aacagggatt acttctgcgg cagcggcggc ttcgtcagat
     4681 tgcagtcgtc aaccgtcagc gaccgcagga aattgagcag atcctcacgc tgctcgggca
     4741 gcagtttgtg cggctgaagg ttcttcgtgt cgagatattg attcggcttt ccgcccgcca
     4801 gcatgatgtc caccgcttct tccagcgtct gcgcactgcc gtcgtggaaa taaggcgctg
     4861 acttcgcgat gtcgcgcaag gtcggcgtct tgaacgcgcc cgtgtcttcc ggtttcttgg
     4921 ttgcgttggc acggccgccg tcaggctcct tctggtccat gccgatgccg acgttgtgat
     4981 actgctggtc cgtgaacaac acgccgtcgt ggcagttgtt gcacttgatt gcctggaaaa
     5041 tgtgccaacc acgccacgcg ctctgactga tcgcctgctg gtcacccgct cgccaccggt
     5101 cccacgccgt gttgccgctg atgatcgtgc gctcatacgc cgcgattgct ttcacgacgt
     5161 tgtccggcgt cgcatcgctc tgaaacacct tttgaaactg cgtcttgtac ccttcgagcg
     5221 cgttcagctt cgcgacgatc tcgtcagcct tcgcgctcat gttcgcgccg gtccacgcgg
     5281 ccagcgcctg cttctcgagc gacgggctgc gtccgtccca atagaactct ttgtgataac
     5341 cgatgttcca aagtgtcggg ctgctgcgcg gcaactgctt gttgagtgcg ccgacggcct
     5401 tcggtagacc gtcggtcagt cccttctcgc acacgtgaca cgtatagcag gaccgcgaac
     5461 catcagcgct gagacgttcg tcaaaaaaga gctgccggcc gagcgccact ttttcgggcg
     5521 tcatcgggtt gtcggcaggg atgaccattg cttcgtaagt gctgagtccg gccggaagcg
     5581 gctgaatctc gggtgtgaaa ccaccggcgg attccctgac gtttgagctg caagcattga
     5641 tgagaacgac ggcgacgagg accaggcatg gtccaagcgc gaagaacaat ttgcgggtgt
     5701 tcatagtggg cggattctgc catctatctt tgcgaaatgt ctagagagat ttgtatgctg
     5761 cgagtgcgat gcgcaacttt cgaaaagcag ttctgttggc agtcgttctt ttctttacgg
     5821 cttgcggcag cgagaacgac ggcgagcaca cgaccacgac ggtggtggtt ccgccgccgg
     5881 cgcaacaggt gttgcgtgca gaaacgcggc cgtctccgaa aattccggca aagcccggcg
     5941 atccgaagtt gaaagtggat ccgtcgaagc cgctgctgat cttcaacttg cccaacggaa
     6001 agacgtttcg acagggcgaa gaggtcgtta tcgatttctc gctcgcgact gctacgt
//
LOCUS       DASWTX010001303         2217 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_322852, whole genome shotgun sequence.
ACCESSION   DASWTX010001303 DASWTX010000000
VERSION     DASWTX010001303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2217)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2217)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2217
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322852"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1774)
                     /locus_tag="VGD38_19840"
     CDS             complement(<1..1774)
                     /locus_tag="VGD38_19840"
                     /inference="COORDINATES: protein motif:HMM:NF019239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0730348.1"
                     /translation="MMMKRFAFSLAITFCVLVVVSQPTVVFAKDKWISIRSKNFFLVG
                     NASEKEIRKVATKLEQFRAVLTQAFPNMRFNSPVPTTVVVFRDHRSYTPFKPRANTAG
                     YFQAGPDVNYITLTTEIPGAEFGRPTSQGGRDPAYEVIFHEYTHLLVNNSFDNAPLWF
                     NEGLAEYYSSFIISDDQKIVLGRNIGEHVYLLRDNKMLPLKTLFEVDHKSPHYNEAKK
                     QGIFYAQSWALVHYLMIGKAGKVDQLAKFLDLLNARVPVEDACTKAFGMPLEAMEKEL
                     RNYVNQSRYNELTGHFERKLEIDISNAPTVLTEAEAQAYLGDLLLHSYRKDAYTYLQK
                     ALKLDPNLGMAHASLGMAYFREGKVDEARASLERAVSLNSQNYLAHYYYAFTLSRQQP
                     ESEPVSAYTPEALKKIREHLQKAIALRPDFSESYNLLGFVSLVSGENMPEAIDALKKA
                     LSGSPGRHEFAFTLAQLYARSGDYKTARQMFEQITQSNAEDYLRQNSQVLLDQIRGIQ
                     ERENTFVDQLKQRSGSNSGPPALVNVGPESATNDSGGGNSTRPAPTAPTDPADPSSYL
                     REVLRAPAAGETQLQGTLLRLECDA"
BASE COUNT          460 a          585 c          641 g          531 t
ORIGIN      
        1 tggcgtcgca ctcgagccgc aacagcgtgc cttgcagttg agtttcgccg gcggctgggg
       61 cgcgcaaaac ttcgcgcaag taagaagacg gatcggccgg atccgtcggc gcggttggcg
      121 ccggacgcgt gctattgcca ccgccgctgt cgtttgttgc tgattccgga ccgacgttga
      181 cgagagccgg cgggccgcta ttcgagccgg aacgttgttt cagttggtcg acgaaagtgt
      241 tttcgcgttc ctgaatgccg cgaatctggt ccaatagcac ctgcgaattt tgccggagat
      301 aatcctcggc gttggattgc gtgatttgtt cgaacatctg gcgcgcggtt ttgtagtcgc
      361 cgctgcgcgc gtagagttgg gccagcgtga acgcgaactc atgccggccg ggtgaaccgc
      421 tcaacgcctt tttcaacgcg tcaatcgctt cgggcatgtt ctcgccgctg acgagactga
      481 caaacccgag caggttgtac gactcggaaa aatccggccg caacgcaata gctttctgca
      541 agtgctcgcg aatcttcttt aacgcttccg gcgtgtacgc agacacgggt tcactctcag
      601 gctgctggcg gctcaacgtg aacgcgtaat aatagtgtgc gagatagttt tgcgagttca
      661 acgaaacggc gcgttcgaga ctcgcgcgcg cttcgtcgac ttttccttca cgaaaatacg
      721 ccatgcccaa cgaggcatgg gccatgccga gattcggatc gagcttgagc gctttttgca
      781 ggtacgtgta agcgtctttg cgataactgt gaagcagcag atcgccgaga tacgcctgtg
      841 cttccgcttc agttagcacc gtaggcgcat tggagatgtc gatttccagc ttgcgttcga
      901 agtggccggt caactcgtta taccggctct gattgacgta gtttcggagc tctttctcca
      961 tcgcctcgag aggcattccg aacgctttcg tacacgcgtc ctccacaggc acgcgagcat
     1021 tgagcaggtc caaaaacttc gcgagctgat cgacttttcc ggccttgccg atcatcaggt
     1081 agtgcaccaa cgcccacgac tgcgcgtaga agatgccctg ctttttggcc tcgttgtaat
     1141 gcggtgattt gtgatcgact tcaaacagcg tcttcaacgg caacatcttg ttatcgcgca
     1201 acaggtagac gtgttcgccg atgtttcttc cgagcacgat tttttgatcg tcggagatga
     1261 tgaagctgct gtagtactcg gcaagccctt cgttgaacca cagcggcgcg ttgtcgaagc
     1321 tgttgttgac cagcaggtga gtgtattcgt gaaagatcac ttcgtaggcc gggtcacgtc
     1381 cgccttgtga agttggtcta ccgaactcgg ctccggggat ttcggtcgtg agcgtgatgt
     1441 agttcacgtc cggtccggcc tgaaagtaac cggcggtgtt agcacgcggc ttgaacggcg
     1501 tgtaagaccg gtgatcccgg aaaacaacca cggtcgtcgg aacaggcgaa ttgaaacgca
     1561 tgtttggaaa agcctgcgta aggaccgcgc gaaactgctc gagtttcgtc gcgactttgc
     1621 ggatctcttt ctcgctggca tttcctacca ggaagaaatt cttactgcgg atgctgatcc
     1681 acttgtcttt cgcaaagacg acggtgggtt gagagactac gactaaaacg caaaaagtta
     1741 tagcaaggga aaaggcaaaa cgcttcatca tcatggccca agggttcgcg agaaagtgaa
     1801 gggacgagag acgggcggat tataggtttc gatccgcccg tttgcaagca cttcacgcgc
     1861 gcttgtaggg ttctaatctg aacgccgaag gcgttgtcta gtttcagccc aggggttggc
     1921 ggttacgaca accctgggaa actttaacca attgtggttg taacgctgaa agcgttggcg
     1981 acttactgcg gcgacgtctt gccaacacct ttggcgtttg tccttctgtc ttacttgatc
     2041 ccagggttgg cacaaccctg ggtcacagat gagaaacact cgtacgctga aagcgttcgc
     2101 gaggggaacg cgccactcgt taatgctttc agcatcggta ccaaagtgtc tctttagtcc
     2161 cagggttggc gaaaccgcca gccctgggct gacattagta aacgccttcg gcgttcg
//
LOCUS       DASWTX010001304         1966 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_61919, whole genome shotgun sequence.
ACCESSION   DASWTX010001304 DASWTX010000000
VERSION     DASWTX010001304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1966
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61919"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..428
                     /locus_tag="VGD38_19845"
     CDS             <1..428
                     /locus_tag="VGD38_19845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730349.1"
                     /translation="WFMYAPKFRYSLAVICVVTLCGVGLVYSRMMQRIPRGEWGGTHI
                     SINVGEQSATIEFDCAHGEIPGPLSIDGEGKFELRGTFTRERGGPVRADEPGKKEPAI
                     YSGKITGNKMTLTMKLADSNESETFTLEKGKEAELFKCK"
     gene            441..722
                     /locus_tag="VGD38_19850"
     CDS             441..722
                     /locus_tag="VGD38_19850"
                     /inference="COORDINATES: protein motif:HMM:NF012911.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HEY0730350.1"
                     /translation="MKLGVARKFLIKGDVQGVGYRFFAQRAAARHQVVGYVRNCPDGS
                     VEAWAEGPASSVEAFKHDLATGPQWAVVDQVEEINLEPTGTYSAFRIER"
     gene            734..1255
                     /locus_tag="VGD38_19855"
     CDS             734..1255
                     /locus_tag="VGD38_19855"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: protein motif:HMM:NF002634.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003999 - adenine
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEY0730351.1"
                     /translation="MDHLKSLIREVPDFPKPGINFYDITTLLKHPEGLRNTVDALASE
                     FEGAKVDSVIGIEARGFIFAPALAYHLGAGFVPVRKPRKLPAECASVSYDLEYGQDTL
                     QIHRDAVGDGHRVIIADDLLATGGTARAVCDLVEQLGGQVVGLVFVVELEFLPGREKL
                     QGYDVRSLIKYQS"
     gene            1279..1355
                     /locus_tag="VGD38_19860"
     tRNA            1279..1355
                     /locus_tag="VGD38_19860"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1313..1315,aa:Arg,seq:cct)
BASE COUNT          467 a          477 c          596 g          426 t
ORIGIN      
        1 ggtggtttat gtacgcaccg aagtttcgtt atagtctcgc ggtaatctgt gtggtcacac
       61 tctgcggtgt gggcctggtg tactcgcgaa tgatgcaacg aattccgaga ggagagtggg
      121 gcggaaccca catcagcatc aacgtcggcg agcagtcggc gacgatcgag ttcgactgcg
      181 ctcatggcga gattccgggt ccgctgtcga tcgacggtga ggggaagttt gagttgcgcg
      241 gaacgttcac gcgcgaacgc ggtggcccgg tgagagcaga cgaaccggga aaaaaggagc
      301 ccgcgattta cagcggcaag atcacgggca acaagatgac gttgacgatg aagctggcag
      361 actcgaacga gtcggagacg tttacgctcg agaagggtaa agaggcggag ttgttcaagt
      421 gtaagtagga acgagggggg ttgaagttgg gagtagcgcg aaagtttttg attaaaggtg
      481 acgtgcaggg agtcggttat cgtttctttg cgcaacgcgc ggcggcgcgg catcaggttg
      541 tgggttacgt gcgcaactgt ccggatggca gcgtagaagc gtgggccgaa ggaccggcga
      601 gcagtgttga ggcattcaag catgatcttg cgacggggcc gcagtgggcc gtagtcgatc
      661 aagtggaaga gataaacctg gagccgacag ggacgtactc ggcatttcga atcgagagat
      721 aaataaagga cacatggacc atctcaaatc gttaatacgc gaagtgccgg attttccgaa
      781 acccggcatt aatttttatg acatcacgac gttgttgaag catcccgagg gtttgcgtaa
      841 tacggtcgat gcgctggcgt cggagtttga aggcgcgaaa gttgattcgg tgattggtat
      901 cgaagcgcgt ggcttcatct tcgcgccggc gctcgcctat cacctcggcg ccggctttgt
      961 gcccgtgcgc aaaccgcgca agttgccggc ggagtgcgcg tcggtttctt acgaccttga
     1021 gtatggtcag gacacgttgc agatccatcg tgatgcagta ggcgacggtc atcgcgtgat
     1081 cattgctgac gacctgctcg caaccggcgg cacggcccgc gcggtctgtg atctggtcga
     1141 gcagcttggc ggacaagttg ttggattagt gttcgtcgtg gagttggaat tcctgcccgg
     1201 gcgagagaag ttgcagggtt acgatgtgcg gtcgttgatc aagtatcaga gttagccctt
     1261 ataatcctca ccacgtgtgc tcccgtagct cagctgcata gagcgtccgc ctcctaagcg
     1321 gaaggtcgcg cgttggaatc gcgccggggg caccagtttt cctaaggaaa ttagcacctc
     1381 gcctccttca aatgaggttt gtcccgcaat ttgccccgca atttttttct ggagtctgtg
     1441 gcacgagccg tgaatacgca ccggagggca catgaaaatt tctcgaccag cattcaacgc
     1501 cggaagcgcg gtatgcgcac ggagtatatt gccagactca cttactacga caagactgga
     1561 aagcgcaaag gcgtttccaa aaacgcagcc actcattgcg atgcaaaaag ggaacttcag
     1621 gacctaatag atcaacacga agcaggcggc cgcgcgttgg aatcgcgccg gggcaccagt
     1681 tctgcgcaat tagaacctcg ccaccagcga aatgggagta tttgcgctta caaaattgat
     1741 cactcgttct cgccccacga aaacaaaatc attaagagct caagtcgtga tagcataccg
     1801 ctgctcttca aaagtgggag acccggataa attctgaatc gacgagagag cctaattagt
     1861 tagactctct ttaaatagga gtacggaatg actcaccatc acttcgaaac aaaacaacac
     1921 tcaatttctc cgttggctgg atctcatatc gagatccccg tcctcg
//
LOCUS       DASWTX010001305         1511 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_145939, whole genome shotgun sequence.
ACCESSION   DASWTX010001305 DASWTX010000000
VERSION     DASWTX010001305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145939"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            175..>1511
                     /gene="fumC"
                     /locus_tag="VGD38_19865"
     CDS             175..>1511
                     /gene="fumC"
                     /locus_tag="VGD38_19865"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF008909.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HEY0730352.1"
                     /translation="MGAIEVESDRYWGAQTQRSLPHFDIGHDRMPRELIRAFGILKKA
                     AAQVNEELGKLPSDKAKLITQAAEEVIEGKLDDHFPLRIWQTGSGTQTNMNANEVISN
                     RAIELAGGVMGSKKPIHPNDDVNMSQSSNDTFPTAMYIAAAEQLNKLIPRVQQLRDAI
                     AAKAKEFAGVVKIGRTHLQDATPLTVDQEMGGWASLVERDVERLKAAMPGLLDLAIGG
                     TAVGTGLNSHPEFGERAARKIAELTGLPFRSHPNKFAALSAHDELVAASGALKTLAAS
                     LMKVANDVRWLASGPRAGLGELILPENEPGSSIMPGKVNPTQSEALTMVAVQVFGNDL
                     ATSFGGSQGHFELNVYKPVMIHNFLHSVRLLHDAIPSFVEFCVVGIELNRDQIDAHLK
                     ASLMLVTALNPHIGYDKAAQVAKNAHKKKISLRESAVELGYLTGEEFDRLVKP"
BASE COUNT          359 a          440 c          431 g          281 t
ORIGIN      
        1 gatctgtaaa gcgtccgcac tgtaatacat agcccagttc cattcaagcg ccgttcagat
       61 cgggattcgg cgaatcacta cttgccaatc cgcgcttcct gcgcgaagat caaagcgacg
      121 atggctcaac gatcccctga acaatccgct aaaacaagaa ctgaaaccga ttcaatgggc
      181 gccattgagg tcgagagcga ccgctactgg ggtgcccaga ctcaacgttc actacctcac
      241 ttcgacatcg gccatgaccg catgccgcgt gagttgattc gcgctttcgg aattctcaaa
      301 aaagccgccg cgcaggtgaa tgaggaactc ggaaagcttc catccgacaa agcgaagctg
      361 attacccagg cggcggaaga ggtgatcgaa ggaaaactcg acgatcattt tccgctacgc
      421 atctggcaaa ccggcagcgg cacgcaaacc aacatgaacg ccaacgaggt gatctcgaac
      481 cgcgccatcg agctcgcggg cggcgtcatg ggaagcaaga agccgatcca tccaaacgac
      541 gacgtcaaca tgtcgcagtc gtcaaacgac acgtttccga ccgcgatgta catcgccgcc
      601 gccgaacagt tgaacaaact cattccgcgc gtgcagcaac tgcgcgacgc gatcgccgcg
      661 aaggcgaaag agtttgcggg cgtcgtgaaa atcgggcgca cacatcttca ggacgcgacg
      721 ccactcaccg tcgatcagga aatgggcggt tgggccagcc tcgtggaacg agacgtcgaa
      781 cgtttgaaag ccgcgatgcc cggtctgctg gatctcgcga tcggcggcac cgctgtcggc
      841 accggactca actcgcatcc ggaatttggc gaacgcgccg cgcgaaagat tgccgagtta
      901 acgggtctgc ctttccgctc gcacccaaac aagtttgcgg cgctctcggc gcacgatgag
      961 ctcgtcgccg cgagcggtgc actgaaaacg ttagccgcgt cgctgatgaa ggtcgcaaac
     1021 gacgttcgct ggctcgcttc cggaccacgc gccggtttgg gtgaattgat cctgccggaa
     1081 aacgaacccg gctcgtcgat catgcccggc aaagtaaatc cgacgcagag cgaagcgctg
     1141 acgatggtcg cggtgcaggt gttcggcaac gatctcgcga ccagcttcgg cgggtcacag
     1201 ggccatttcg agctgaacgt ttacaagccc gtgatgattc acaattttct tcactccgtg
     1261 cggttgctgc acgatgcgat tcccagtttc gtggaattct gcgttgtcgg catcgagttg
     1321 aaccgcgatc agatcgacgc gcatttgaaa gcgtcgctga tgctggtgac tgcgttgaac
     1381 cctcacattg gttacgacaa agccgcccag gtagcaaaaa acgctcacaa aaagaaaatc
     1441 agtctgcgcg agtctgcggt agagcttggg tatctgacgg gtgaagagtt tgaccggctc
     1501 gtgaagccgg a
//
LOCUS       DASWTX010001306         2372 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_129222, whole genome shotgun sequence.
ACCESSION   DASWTX010001306 DASWTX010000000
VERSION     DASWTX010001306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2372
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129222"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..779)
                     /locus_tag="VGD38_19870"
     CDS             complement(<1..779)
                     /locus_tag="VGD38_19870"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HEY0730353.1"
                     /translation="MTQLDIKDKQQCRWDIVSLGEVMLRLDPGDGRVHTTRSFQVWEG
                     GGEYNVARGLKRCFGLDAALVSAFADNAVGRLIQDLIYQGGVDQSHVKWVKFDGVGRT
                     VRNGLNFTERGFGVRAAAGCSDRGHTAVSQLKPGDIDWEQIFANEGARWFHTGGIFCA
                     LSETTPAVAREAMEAAKKHGVIISYDLNYRDSLWRSIGGRERAIAVNRELAPLVDVMI
                     GNEEDFTATLGFEVEGLDEHHSKLEVENFRRMIEKAVAEFP"
     gene            complement(776..2347)
                     /locus_tag="VGD38_19875"
     CDS             complement(776..2347)
                     /locus_tag="VGD38_19875"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY0730354.1"
                     /translation="MNDASEIANAAALPKPHGTTSTATAAAPAFESLGTKIGRYRWTI
                     CGLLFFATTINYIDRQVLGILAKDLKVAIGWTEVDYGNIVASFNVAYAFGLLLAGRLM
                     DRIGTRIGYALAIIWWSLAAMAHALARTPFGFGVARAALGVGEAGNFPAAIKTTAEWF
                     PKKERAFATGIFNAGSNVGAIVAPLTVPWIATHLGWRWAFILTGAIGFLWLLFWLPLY
                     RRPEEHPKVSSAELAHIQSDPPDPPAEKLPWVRLIPHRQTSAFAIGKYLTDPVWWFYL
                     YWIPSFFRDHHKMDLIGSAGPLIAIYLIADVGSIGGGWLSSTFIKRGWTINRARKTAM
                     LICALAVTPIIFASNVKNLWAAALLIGVAAAAHQGWSCNLFTTTSDMFPRRAVGSVVG
                     IGGMAGALGGATMAVATGYILESTGQNYSIVFTIAGTLYLLALAIIHLLTPELAPVED
                     VERGAARFSVGTFIGFGFMGLVFGSFVGWCVSLAMKVPGGVQFEYMMIAGGIGAAVGV
                     LAGLLLNRTQAETAR"
BASE COUNT          506 a          746 c          688 g          432 t
ORIGIN      
        1 ttcggaaact cagcgaccgc tttctcgatc atgcggcgaa agttttcgac ttcgagtttt
       61 gaatgatgtt cgtcgagacc ctcgacttca aaaccgagcg tggccgtgaa gtcttcttcg
      121 ttgccgatca ttacgtcgac gagcggcgcc agttcgcggt tgacggcgat cgctctttca
      181 cggccgccga tcgaacgcca caacgagtcg cgataattga gatcgtaaga aatgatgacg
      241 ccgtgcttct tcgcggcttc catcgcttca cgcgcgaccg cgggcgtcgt ttccgacaac
      301 gcgcagaaga tgccgccggt gtgaaaccag cgcgcgcctt cgttcgcgaa gatctgttcc
      361 cagtcgatat cgccgggctt gagttgtgaa acagccgtat ggccgcgatc ggaacaaccg
      421 gcagccgcac gcacgccgaa accgcgttcg gtgaagttca atccgttacg caccgtgcgt
      481 ccaacgccat cgaacttcac ccacttcaca tgcgactggt ccacgccgcc ctggtagatc
      541 agatcctgga tcaaccggcc gaccgcgtta tcggcaaacg ccgagacaag cgccgcgtcc
      601 agtccgaaac aacgcttcaa tccacgcgcg acgttgtatt caccgccacc ttcccaaacc
      661 tgaaaactgc gcgtcgtgtg cacgcgcccg tcccccggat cgagccgcag catcacctcg
      721 ccgagcgaaa caatgtccca gcggcactgt tgtttgtcct ttatatctaa ctgtgtcatc
      781 gcgccgtttc tgcctgcgtg cggttcagca acaatccggc aagcacgccg accgctgcgc
      841 caatcccgcc cgcgatcatc atgtactcga actgcacgcc gcccggaacc ttcatcgcta
      901 aactcacgca ccaaccgacg aacgaaccaa acacgaggcc cataaaacca aaaccgataa
      961 acgtgcccac ggaaaatctc gccgcgcctc gttcgacgtc ttcgaccggc gcgagctcag
     1021 gcgtcagcag gtgaatgatc gcgagcgcca acaagtacag cgtgcctgcg atcgtgaaca
     1081 cgatcgagta gttctgtccg gtgctctcga gaatgtaacc cgtcgcaaca gccatcgttg
     1141 cgccgccgag cgcgccggcc atgccgccga tgccgacgac cgaaccaacc gcgcgccgcg
     1201 gaaacatgtc tgacgtcgtc gtgaacaggt tgcacgacca accctggtgc gcagcggccg
     1261 cgacgccgat caacaaagcc gcggcccaca ggttcttcac attcgatgcg aagataatgg
     1321 gcgtcacggc gagcgcgcaa atcagcatcg ccgttttgcg cgcgcgattg atggtccaac
     1381 cgcgcttgat gaacgtcgac gagagccagc cgccgccgat gctgccgacg tcggcgatca
     1441 ggtagatggc gatcaacggt ccggcactgc cgatcagatc catcttgtga tgatcgcgga
     1501 agaagctcgg tatccagtaa agataaaacc accagaccgg atcggtcagg tatttgccga
     1561 tcgcaaacgc ggaggtttgg cgatgcggaa tcaaacgcac ccacgggagt ttctcagccg
     1621 gcggatcggg cggatcgctt tggatgtggg ccagctcggc ggacgagact ttcgggtgct
     1681 cctcggggcg gcggtaaagc ggcagccaga acagcagcca cagaaaaccg atcgcgcccg
     1741 tcaggatgaa ggcccagcgc cagccgagat gcgtcgcgat ccacggcacg gtcagcggtg
     1801 cgacaatcgc gccgacgttt gaaccggcgt tgaagattcc tgttgcaaac gcgcgttcct
     1861 ttttgggaaa ccattcggcc gtggttttga tcgcggccgg gaagtttccg gcttcgccga
     1921 cgccgagcgc cgcgcgtgcg acgccgaagc cgaagggagt gcgcgcgagt gcgtgggcca
     1981 tagccgcgag actccaccag atgattgcga gagcgtagcc gatgcgcgtg ccgatgcggt
     2041 ccatcaaacg gccggcgagc aggagtccga aggcgtaagc gacgttgaag gaggcgacga
     2101 tgttgccata gtcgacttcg gtccaaccga tggcgacctt gagatccttt gcgaggatgc
     2161 cgagcacttg ccggtcgatg taattgatcg tggtggcgaa gaacaggaga ccacagatgg
     2221 tccagcgata gcggccgatc tttgttccca acgattcaaa tgccggagcc gccgcagtag
     2281 ccgtactcgt agtcccgtgc ggcttgggaa gcgcagccgc attcgcgatc tcgctagcat
     2341 cgttcatctc tcgactcctc gaaatttgat tt
//
LOCUS       DASWTX010001307         5723 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_211080, whole genome shotgun sequence.
ACCESSION   DASWTX010001307 DASWTX010000000
VERSION     DASWTX010001307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5723
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211080"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3049
                     /locus_tag="VGD38_19880"
     CDS             <1..3049
                     /locus_tag="VGD38_19880"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004225.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="error-prone DNA polymerase"
                     /protein_id="HEY0730355.1"
                     /translation="GVVSIPVLVRNRTGYQNLCRLVTLMKLRVPKHAKPGECAATTDE
                     LAAHAKGLVCLTGSDDGPLARIIQRQDADSAKDAQRNVEWLLDVFGKKNVYAELQRHF
                     DRDEEARNQTVIELAQRNRLPLVATNGVCHATPDRREVSDVFTCLRNYVRLENAGRLL
                     ARNSERHLKSGAAMERLFADLPEAIANTAELSSRLKFTLEDLGYEFPKYPVPPGETMT
                     SFLRKRTEEGARARYTGMNGMPTYERAQPQLERELKLIEKLKLEGYFLIVWDIVEFCR
                     REGILVQGRGSAANSAVCYSLGITAVDPIGMDLLFERFLSEERGEWPDIDLDLPSGEK
                     REKAIQYVYQRYGQLGAAMTANVITYRGRSAAREVGKVLGFDDKTLSQLAGLVHTWEW
                     KDPQDSSERQFRDAGLDLQNPRIRKFFQLYQMVQDLPRHLGQHSGGMVICQGQLDSVV
                     PLEPAAMPGRVVVQWDKEDCADLGLIKVDLLGLGMMAVLEDSIQLIRDSYGENVDLAH
                     LPPNDRSVYEALQNADTIGMFQVESRAQMSCLPRLRPDKFYDIVVQVAIIRPGPIVGN
                     MVHPYLKRRQGREIPTYAHPALEPILKRTLGVPLFQEQLLRMAMVCAGFTGGEAEELR
                     RAFGFKRSEARMKAIEGKLRAGLKRNGIVGKTQDEIVLSISSFALYGFPESHAASFAL
                     LAYASAYLKCNYLAAFTTAMLNNQPMGFYQPFTLIKDAQRHGLKVLPVDITCSDWLCT
                     LEKLETRAGLGEGEKGAENRVTWGVGPVPSVSVSSSPNLALRLGLRYVKGLSEQAGRA
                     IVRERNVRPFAGIDDLRNRVPELRKDELRKLAATGALNFLQTPPAHRRDALWQVERVA
                     RPAGDLYEQLLEQDGNSPLDSMTVFERVDADFRGTGLTIGKHPVAYHRQKLNRLKALR
                     AVDIRKLADGNYVRVAGWVIVRQRPGTAKGFMFLSLEDETGVSNIIVTPQLFDRYRRE
                     LVNYPFLLIEGSLQNQDNVISVKASRIEPLPFQVVAAPSHDFH"
     gene            complement(3058..3453)
                     /locus_tag="VGD38_19885"
     CDS             complement(3058..3453)
                     /locus_tag="VGD38_19885"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0730356.1"
                     /translation="MPRLLIVDDEEAICFSMSEYFSLHGYKVDTARDMEEAETLLGSS
                     EYKVVIQDLRLSLTNNSDGLEMIRTIREHNPQTRIIVLTAYGSAEVEDEARRCGADAF
                     LRKPKPLSQVAQVVQGLIESPPRTAARPA"
     gene            complement(4207..4812)
                     /locus_tag="VGD38_19890"
     CDS             complement(4207..4812)
                     /locus_tag="VGD38_19890"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEY0730357.1"
                     /translation="MSALLVVVMVAFGKSEAKADPVTFTTSGIFTCGGCAGSGTNSVT
                     FAGGMGNALMITFTGLGSTSLNTPTGSSFGNFQTFVSGTGVIAASGTFTLTITQSVPI
                     AGSDSFSATFSGTFSASNSGTGIVNFTVSSVTIGGITYAITNNPLNLVPPASNNGITT
                     VQGQITGSAVPEPTTMLLLGTGLLGVAGAVRKRFRSNPEAE"
     gene            complement(5011..5646)
                     /locus_tag="VGD38_19895"
     CDS             complement(5011..5646)
                     /locus_tag="VGD38_19895"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEY0730358.1"
                     /translation="MPHIKGSVKIFVMLAVFTVVSFGFTASAQADMVGVCAPDSPALC
                     AASVSLSGNTFTITLTNTSPAANGGFLTAVAFNLTPGTTVNNFTTTNGNFALFGPAPT
                     GWTGSVAPDGTRTHLISATGNDYNGGGNPSGGTPTGGTVTFTLTLASLNGNTEASVFN
                     SIMIRMRGFQNGGSDKDPLITEAPEPASMLLLGTGLIGIASVFRKRLARKE"
BASE COUNT         1268 a         1573 c         1630 g         1252 t
ORIGIN      
        1 cggcgtcgtc tcgattccgg ttctggtcag aaaccgcacg ggttatcaaa acctttgccg
       61 cctggtcacg ctgatgaagc tgcgtgtgcc taaacacgca aaaccgggcg agtgcgccgc
      121 gactactgac gagctcgcgg cgcatgcgaa aggcctggtc tgtttgaccg gcagcgatga
      181 tgggccactc gcgcgcatca tccagcgcca ggacgccgac agcgcgaaag acgcgcagcg
      241 aaacgttgaa tggctgctcg acgtgttcgg caagaaaaac gtctacgccg agttgcaacg
      301 ccattttgat cgcgacgaag aagcacgcaa ccagacagtg atcgaactcg cgcaacgcaa
      361 tcgtttgccg ctcgtggcca ccaacggcgt gtgtcatgcc acgcccgatc gacgcgaagt
      421 ctcagacgtc ttcacctgcc tgcgcaatta cgtgcgtctg gaaaatgccg gccgcttact
      481 cgctcgcaac tcggaacgcc acctgaaatc cggcgccgcg atggagaggc ttttcgcgga
      541 cttgccggaa gcgattgcca acaccgccga gctttcgtcg cgtttgaaat tcacgctcga
      601 agacctcggt tatgagtttc ccaagtatcc ggtcccgcca ggtgagacga tgacgtcgtt
      661 tctgcgcaag cgcactgaag aaggcgcgcg cgctcgttac acgggcatga acggcatgcc
      721 gacttacgaa cgagcgcagc cgcaactcga acgcgaactg aaactgatcg agaagctcaa
      781 gctcgaaggt tactttctga tcgtttggga catcgtcgag ttttgccggc gcgagggaat
      841 cctggtccag ggacgcggtt cggcggccaa cagcgccgtc tgttattcgc tcggcatcac
      901 ggccgtcgat cccatcggca tggatctttt gttcgaacgt tttctttccg aagaacgcgg
      961 cgaatggccg gacatcgatc tcgatctgcc gagcggtgag aaaagagaaa aagcaattca
     1021 atacgtctat cagcggtacg gacaactggg cgcggccatg acggccaacg tcattaccta
     1081 ccgcgggcgt tctgcggcgc gtgaagtcgg caaggtgctg ggctttgacg acaaaacgct
     1141 gtcgcagctt gcgggtctgg tccatacgtg ggaatggaaa gacccgcaag actcctccga
     1201 gcggcagttt cgcgatgccg ggctcgattt gcaaaacccg cgaatcagga agttcttcca
     1261 gctttatcaa atggtccagg atttaccccg ccatcttggg cagcactccg gcggcatggt
     1321 catctgtcag ggacaacttg actcggtcgt gccgctcgaa ccggccgcga tgccgggacg
     1381 cgtggtagtg caatgggaca aagaagattg tgcggatctc ggattgatca aagtagatct
     1441 gctggggttg ggaatgatgg cggtgctgga agattcgatt caactgattc gtgattcata
     1501 cggcgagaac gtcgatctcg cgcacctgcc gccaaacgac aggtcagttt acgaagcact
     1561 gcaaaacgcc gacaccatcg gcatgtttca ggtcgagagc cgcgcccaga tgtcgtgcct
     1621 gccgcgtctg cggccggaca agttctacga catcgtggtc caggtggcga tcattcgtcc
     1681 cggtcccatc gtcggcaaca tggtccatcc gtatctcaag cgccggcagg gcagggaaat
     1741 accgacttac gcgcaccctg cgctcgagcc gatcttaaaa cgcactctgg gagtgccgct
     1801 gtttcaggag caactgctgc ggatggcgat ggtgtgtgcc ggtttcaccg gcggcgaggc
     1861 tgaagagttg cgccgcgcgt ttggtttcaa acgttcggaa gcgcgcatga aagcgatcga
     1921 gggaaaactg cgcgcgggcc tgaagcgcaa cggcatcgtg ggcaaaactc aggacgagat
     1981 cgtgctgtcg atcagctcgt ttgcgcttta cggttttccg gaatcacacg cggcgagttt
     2041 tgctttgctc gcgtatgcga gtgcgtatct caagtgtaat tacctggcgg cgttcacgac
     2101 cgcgatgctc aacaatcagc cgatgggttt ttatcaaccg ttcacgttga ttaaggacgc
     2161 gcaacgtcac ggtttgaaag tgctgccggt cgacattacc tgttcggatt ggttgtgtac
     2221 gctcgaaaaa ctggaaacga gagcgggatt gggagagggg gagaaagggg ccgagaatcg
     2281 ggtgacatgg ggagttggcc cggttcccag cgtttcagtc tcctcctctc ccaatctcgc
     2341 tctgcgtctt ggcctgagat acgtcaaagg tctcagcgag caagccggcc gcgcgatcgt
     2401 gcgcgagaga aacgtcagac cttttgccgg catcgacgat ctacgcaacc gtgttcccga
     2461 actgcgcaag gatgagctgc gaaagctggc cgccaccggc gcgctcaatt tcctgcaaac
     2521 acctcccgcg caccggcgcg atgcgttgtg gcaagtggaa cgagtcgcgc gtccagcggg
     2581 agatctctac gaacaactgc ttgaacaaga tggaaattca ccgcttgatt cgatgacggt
     2641 gttcgaacga gttgacgcag atttccgggg cactggtcta acgatcggca aacacccggt
     2701 ggcttatcac cggcagaaac tgaatcggct aaaagcgctg cgagcggttg atattcgtaa
     2761 attggccgac ggtaattacg tgcgcgtggc cggttgggta atcgttcgcc aacgtcccgg
     2821 cacggccaag ggatttatgt ttctcagcct ggaagatgaa accggtgtga gcaacatcat
     2881 cgtgacgccg cagctcttcg atcgctaccg gcgcgagctc gtcaattacc cgtttctctt
     2941 aattgaagga tcgttacaga accaggacaa cgtaatctca gtgaaagcca gccggataga
     3001 accacttccg ttccaggtcg tggcggcccc ttcacacgat tttcactaga aactgcttca
     3061 ggcagggcgg gcagcggtgc ggggcggtga ctcgatcaag ccctggacca cttgggccac
     3121 ttgcgacaac ggcttcggct ttcgcaaaaa ggcatcggcg ccacaacgtc ttgcttcgtc
     3181 ttcgacttca gccgagccat aagccgtcaa aacgataatc cgtgtttgcg ggttgtgctc
     3241 tctgatcgtc cggatcatct cgagtccgtc cgagttgttg gtcagactca ggcgcaaatc
     3301 ctgaatcacg actttgtact ccgaagagcc gagcagcgtc tcagcctctt ccatatcgcg
     3361 ggctgtgtcg actttgtaac cgtgcaggga gaagtactca ctcatcgaga agcagatcgc
     3421 ttcttcatcg tcgacgatga gaaggcgggg catgggctct tcccgggagg aattgtcagc
     3481 ccgcgactgc cacatttgtc tcagtttgcc ggagactttt ttgagagttc caaatcgatt
     3541 ctgcttcacg gcacccacgg aaactgcgac accagaacca cgcacgaggc tcgtgactgg
     3601 cggttaagtt aatgactgaa tactgcgctt ccctttgttc gttaacgtcc aaactcagtg
     3661 cacagtttca ccctggctgc gactcaagag cttgagcgca tgcgaagcac cagggggttc
     3721 cgtagtatca gagtaccgcg aggtcgaatt cgaacaaacg ccgcgtactc cagcgtgacg
     3781 cgcaagagcg taagttgttt agctccggtc gagctcatcg ttgcacctcc gcacagtaac
     3841 gatgaggtcg ggcaacggct ggtcttcgtt ggggtccaac gatcgttgcc cgccccgaag
     3901 gctaaatcgg tattgctgcc cttacattgg gccgctgggg aacggggacg ttaatttttc
     3961 cggaaatgct cggcgaggct ggcttagtaa tgatgtaaag caaaacttcg caaacctcac
     4021 gcgtgccggt tccgatcgta tttcccgtct catcctgtaa agcgtagatc tgaccgtttc
     4081 cgtccagggg aagaatcatt ggtttcgcgt acattctctg tctccttacc cgggccgttt
     4141 gacgaatccg tttgcgctaa caagacaaac ggcggtagtc acgtgcgccg cggtgacggc
     4201 gtgtgactat tccgcctcgg ggttcgatct gaaccgtttc cgaactgcgc cggcaacacc
     4261 gagtagacca gttccgagaa gcaacatggt ggttggctcc ggaacggcgc taccagtaat
     4321 ctgcccttgc accgtggtta ttccgttatt ggaagccggc ggcacaagat tcagtggatt
     4381 gttcgtgatc gcgtaagtaa tcccaccgat cgttactgat gaaacggtga aattcacgat
     4441 ccctgtgccg gaattgctgg cgctgaaggt tccactaaac gtcgctgaaa aactatcact
     4501 cccagcgatc gggactgatt gtgtaatggt gagcgtaaag gtgcctgatg cagcgatgac
     4561 acccgtgccg ctaacaaaag tttgaaagtt tccgaaactc gaaccagtcg gagtgttcag
     4621 tgaggtcgaa ccgagacccg tgaacgtgat catgagcgcg ttgcccatgc ctccagcaaa
     4681 ggtaaccgag ttagtgccgc tgccggcgca accaccgcag gtaaaaatgc ctgacgtggt
     4741 aaaggtcacg ggatcggctt tcgcttcaga cttgccgaaa gccaccatga ccacgaccag
     4801 cagagcactc ataaaagttg cttttatgat actcgccata gttaggtccc cttttctatc
     4861 cccagtaatc gccgtccgca ctacgtcgac aagcgaccta atcgctcggg taggcacccc
     4921 agttataggt tgatgtttcc acacctgcgg gcaaagcaga tgtggaaaca tgttgttgca
     4981 cgaccgaaaa gagttcgaag cgaaacgctc ttattctttt cgggcaagtc tcttacgaaa
     5041 aactgacgcg attccgatga gcccggttcc gagaagcaac atgcttgccg gttccggagc
     5101 ttcggtgatc agcgggtcct tgtcagagcc gccgttctgg aatccgcgca tacgaatcat
     5161 gatgctattg aaaacactcg cctcggtatt tccgttcagg ctcgctagag tcaacgtgaa
     5221 ggttactgtc cctccagttg gtgtgcctcc actcggattt ccaccgccgt tgtaatcgtt
     5281 gccggtcgca ctgattaaat gagtgcgagt gccgtcggga gctacgcttc cggtccatcc
     5341 agttggtgct ggaccgaaca aggcaaagtt tccgttagtg gtggtgaaat tattgacggt
     5401 tgttccggga gtcaagttaa aagcaaccgc cgttaaaaaa ccaccgttcg ctgccggact
     5461 ggtgttggtc agcgtaatag tgaatgtgtt gccgcttaaa cttactgaag cagcacacaa
     5521 tgccgggctg tcaggcgcac agactccaac catgtctgcc tgcgcactgg cagtgaatcc
     5581 aaagctgacg accgtaaaga ccgccagcat gacaaagatc ttcacagacc ctttgatgtg
     5641 gggcattcca agtctcctga gaggggtatg aaattactat acgaaacctg taatgattgc
     5701 tttactgttt ttggcggcgt ctt
//
LOCUS       DASWTX010001308         2559 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_16039, whole genome shotgun sequence.
ACCESSION   DASWTX010001308 DASWTX010000000
VERSION     DASWTX010001308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2559
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16039"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2559)
                     /locus_tag="VGD38_19900"
     CDS             complement(<1..>2559)
                     /locus_tag="VGD38_19900"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEY0730359.1"
                     /translation="TRRRVEDQTVYSVNKKGEFQVLFPGRLILRTSATFSQRVPLPDL
                     IDVDDTLPIHDGFQIVPQEIPLELRIFTPDGREFSANEITLADLKKFRDLRGSPVGPW
                     SYRLTGTSDPIDDEDSIITTPRGAVSIGVVETITSESAPPLVNKVALTPGRRQFRFDL
                     YRVGTFVADISQAFTGAQWRGSMRLVDPNGAAVASTTGRRLTFNVDLRTLNKSRDAGG
                     NVRPWRLEVSPTGTPAGSPRISANVIESGRITVASLKSRIEALLGKDQQFVHIFGENK
                     NGHALARLKITNEVSAESIDMHNLLDKALERVEQDPGVNPKDLQVNEVYTIARTSDTF
                     KVGVSLGGEQIVSALLKINCSEVRVDKIDVAIGPSVMIEGGIPAVKLTVPVTGAIKIQ
                     FQGLTLAEAKVRGGKFEMEIGIKLDPNGTPQLVTAVPNSPFDIDLSNEAIALFLVTFP
                     ALGAVIVQRIESRESEINTKVVESVKGLFSDITIAPRILMMIFGAHLTYKSIHFEGED
                     VVFQYLAPVEPEIKPSSNYQGAIGRGIVGQNEHGVIFQPLRLGDTWKADNLNKIEHIV
                     VVMMENRSYDHVLGYRALAGIGEIADGLTSDLITKIKDAPKGPFNVRQLREAGFEKNA
                     ANMMTRLPKSVGHDTHDVQQQLSVRATGPNERMVNSPEGFVENFKLRLKTDPRGVVPD
                     DVLGYYDEKDLAFFDFLARHYAYCDRYYCSHPGPTQPNRMYSLTGDLQRDRNGFPILD
                     NNNGDNFLLSRVPTICDLLVRKGLSFRIYESQPSVTMLRMFARYATDNVNILPLDQLK
                     DDVKPGGRGLPAFTMIEPQMHAHPPNDDHPDADMLRGQQFLREVYVALTSNDAL"
BASE COUNT          511 a          717 c          742 g          589 t
ORIGIN      
        1 agagagcgtc gttggaagtc aacgccacat aaacttctct caggaactgt tgcccgcgaa
       61 gcatgtcggc atccggatga tcgtcattcg gtgggtgcgc gtgcatctgg ggctcgatca
      121 tggtgaacgc tggaaggccg cgtcctcccg gttttacgtc gtctttgagt tggtccaacg
      181 gcaggatgtt gacgttgtcg gtcgcatatc gcgcgaacat tctcagcatc gtcaccgacg
      241 gctgcgactc gtagattcgg aaactcaaac cctttcggac cagcaggtca cagatcgtgg
      301 gcacgcgcga cagcaggaaa ttgtcgccgt tgttattgtc gaggatcgga aagccgttgc
      361 ggtcgcgctg aaggtcaccc gttaaagaat acatgcggtt gggctgagtc gggcccgggt
      421 gcgaacagta atagcgatcg caataggcat aatgcctggc gagaaaatcg aaaaaggcga
      481 ggtccttttc atcgtagtag cccaggacgt cgtcaggtac gactccgcgc ggatcggtct
      541 tcaaccgcag cttgaaattc tcgacgaagc cttcggggct gttgaccatc cgctcgttgg
      601 gcccggtggc gcgtacgctc aactgttgct gcacatcatg cgtgtcgtgc ccgacagact
      661 tgggaagacg cgtcatcatg ttagcggcgt tcttctcaaa accggcctcg cgaagttgcc
      721 gcacgttgaa tggtcccttt ggagcgtctt tgattttcgt aatcaaatca cttgtcagac
      781 catcggcgat ttcgccgatt ccagccaggg cacgataacc gagcacatgg tcgtaggagc
      841 ggttctccat catcacgaca acgatatgtt cgatcttgtt gaggttgtct gctttccatg
      901 tgtcgcccag cctgagtggc tggaagatta cgccgtgctc attttgcccg acgatacccc
      961 gtccaatcgc gccctgataa ttggaggacg gtttgatctc gggctctacc ggcgccaaat
     1021 attggaagac gacgtcctcg ccttcgaagt gaatggactt gtaagtgagg tgcgcgccga
     1081 aaatcatcat caggatcctg ggcgcaatcg taatatccga gaacaggccc ttaacgctct
     1141 cgacaacctt tgtgttgatc tcgctctccc tcgattcaat gcgctgcacg atgaccgccc
     1201 cgagcgcggg aaacgtaacc agaaagagcg cgatcgcctc gttactcagg tcgatatcga
     1261 atggcgagtt cggtaccgcg gtgacgagct gaggcgtgcc gtttggatcg agcttgattc
     1321 caatctccat ttcaaactta ccaccgcgca cctttgcttc agccagcgtg aggccctgga
     1381 actggatctt gatcgcgccc gttaccggga ccgtcagctt cacggcgggg atcccaccct
     1441 cgatcatcac actcggaccg atcgctacgt cgatcttatc taccctcact tcagaacagt
     1501 tgatcttcaa aagtgcgctg actatttgct cgccccccaa tgaaacgccg actttgaagg
     1561 tgtcggaagt gcgtgcaatc gtgtatacct cgttcacctg caggtctttc ggattgactc
     1621 cggggtcctg ctcaaccctt tccagcgcct tgtcgagcag gttgtgcatg tctatcgact
     1681 cagcgctgac ttcattcgtg atctttagcc gagccagcgc gtggccgttt ttgttctcgc
     1741 cgaatatgtg aacgaactgc tgatcctttc cgagtaacgc ttcgatacgc gacttgagtg
     1801 aggcgacagt gatccgtccc gactcgatta cgttagcgga gattcgcggt gagcccgcag
     1861 gggttccggt gggcgacact tcgagcctcc acggacgcac gtttccgcct gcgtcacgcg
     1921 acttgttcag agttcgcaga tcgacgttga acgtaagcct gcgtccggta gtcgacgcga
     1981 ccgccgcgcc gtttggatcg accaaccgca tcgagccccg ccattgtgcg ccggtgaatg
     2041 cctgagagat atcggcgacg aaggtgccta ctctgtacag atcgaacctg aactggcgac
     2101 gtccgggtgt gagcgccacc ttgttgacca gcggcggcgc gctttcggac gtgattgttt
     2161 cgacgacgcc gatgctgacg gcgccgcggg gagtagtgat aatcgaatcc tcgtcgtcta
     2221 tgggatcgct cgtgcccgtg agccggtagg accatggtcc gaccggactg ccgcgcagat
     2281 cccgaaattt tttcaggtcg gccaacgtga tctcgttcgc ggagaactcg cggccgtcgg
     2341 gcgtgaagat gcgcagttcg agagggatct cctgcgggac aatttgaaat ccatcatgga
     2401 ttggtagcgt gtcgtcaacg tcgatgaggt cggggagagg aacacgctgt gaaaaggttg
     2461 ctgacgtgcg caggatcagc cgcccgggga agagcacctg gaactcgccc ttcttgttga
     2521 cggagtaaac agtttgatct tcgactctcc ggcgcgtgg
//
LOCUS       DASWTX010001309         2804 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_62006, whole genome shotgun sequence.
ACCESSION   DASWTX010001309 DASWTX010000000
VERSION     DASWTX010001309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2804)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2804)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2804
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62006"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..540
                     /locus_tag="VGD38_19905"
     CDS             <1..540
                     /locus_tag="VGD38_19905"
                     /inference="COORDINATES: protein motif:HMM:NF015000.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HEY0730360.1"
                     /translation="TLQRTHGLRRRVVDLRVEELRGVGVPSLRDLFELMSQNDLILCL
                     EIKASASTLPDLCCQLVHEFDFQDRVIVECFDLSVLEKITTLKTAALFEPRIYTDQSL
                     IDRSLKVGASVLALHHRLAKPSLIEKAKLAGLRVVVWTVDDPAWVARAQSMGIEALIT
                     NDPAMMIEASDRLRVQLHR"
     gene            537..1409
                     /locus_tag="VGD38_19910"
     CDS             537..1409
                     /locus_tag="VGD38_19910"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY0730361.1"
                     /translation="MTRSPVQFNRFFVSNDFSVSYRRAKLLQWQNQASSGYSLLAVLQ
                     GELSYSTGAKPIDLPAAQFVLFEPNLSITANATRAELLFVTFSASLVMQHAATMRLIP
                     PSSTVTFKPGHFSGDQKLDRLFGEFAAELSDDKPGKDIVLRALGEQLLVHALRNYAQP
                     RRSEELELSRAGLVDRRIRRSVELMYTQLDQDLTLKALAAASYLSPFHFARLFKKLTG
                     STPHNYLAGIRAARAQLLLAETELSVTEIGSRVGYLSASHFTKAFRLATGTTPREFRK
                     ALISANNTSANERQ"
     gene            1483..>2804
                     /locus_tag="VGD38_19915"
     CDS             1483..>2804
                     /locus_tag="VGD38_19915"
                     /inference="COORDINATES: protein motif:HMM:NF019606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-3-phosphate synthase"
                     /protein_id="HEY0730362.1"
                     /translation="MPVAKQAEISPAEGKLGVLLVGLGAVSTTFIAGVEAVKKGFAQP
                     IGSLTQMGTIRLGKRTDNRVPLIKDFVPLAQLKDLVFGAWDIFPESAYDAALNAGVLE
                     KELLAQLKEPLRKIKPMKAVFDQSYVKRLSGANVKEGKTKFDLAQQLIDEIADWKKKN
                     KCSRLVMIWAASTEIFLKPHPVHKTLESFEKAMKENHKAIAPSMIYAYAALKSGVPFA
                     NGAPNLTVDIPALMTLADKNRLAICGKDFKTGQTLMKTIIAPGLKSRMLGLHGWYSTN
                     ILGNRDGEVLDDPDSFKTKEESKLSVLEYILQPEVYPDLYKDFSHVVRINYYPPRGDN
                     KEGWDNIDIFGWLGYPMQIKIDFLCRDSILAAPIVLDLALFMDLAARSGMSGIQEWLS
                     FYFKSPQVAPGLYPEHDLFIQLTKLKNTLRWMQGEEQITHLGIEYYQEP"
BASE COUNT          623 a          828 c          772 g          581 t
ORIGIN      
        1 acgttgcagc ggacgcatgg gttgcgcagg cgcgttgtag atctgagggt ggaggagttg
       61 cgaggtgttg gcgttccgag tctgcgagat ctgtttgagt tgatgtcgca gaacgatttg
      121 atcttgtgcc tggaaatcaa agcgagtgcc tcgacactac ctgatctctg ctgccaactg
      181 gtacatgagt ttgacttcca agacagagtg attgtcgagt gctttgattt gagtgtcctg
      241 gaaaaaataa cgacgctcaa gacggcggct ctgttcgagc cacggattta cacggaccag
      301 agcttgatag atcgttcatt gaaagtgggt gcgtcggtgc tggcgctcca tcaccggctg
      361 gcaaaaccgt cgctaatcga aaaagcaaaa ctagccggtc tcagagttgt tgtttggacc
      421 gtcgacgatc ccgcgtgggt cgcgcgcgcg caatcgatgg gcatcgaagc gttgatcaca
      481 aacgacccgg ccatgatgat tgaagcctcg gatcgtcttc gcgtacagtt gcaccgatga
      541 ctcgttcccc cgtccagttc aaccggttct ttgtttccaa cgacttttca gtttcctaca
      601 ggcgggccaa actacttcag tggcagaacc aagcaagttc gggttactcg ttgctcgcgg
      661 tcctgcaagg cgagcttagt tactcgaccg gcgccaagcc gatcgatctt cccgccgcgc
      721 agtttgttct cttcgaaccg aacctgagca tcacggcaaa cgcgacacgc gccgaacttc
      781 tcttcgtgac tttctcagct tcgctcgtca tgcaacacgc cgcgacgatg cgtttgattc
      841 cgccgagctc caccgtcacg ttcaaaccag gccacttcag cggggatcaa aaactcgacc
      901 gcttgtttgg cgaattcgcc gccgagctca gcgacgacaa acccggcaaa gacatcgtac
      961 tgcgcgcgct cggcgaacaa ctgctggtcc acgctttacg caactacgcg caaccgcgcc
     1021 gttctgaaga gctcgaactc tcgcgcgccg ggttagtcga ccggcgcatt cgccgctcgg
     1081 tcgagctgat gtacacacaa ctcgatcagg acctgacact caaagcactc gccgctgctt
     1141 cgtatctttc gccttttcac ttcgcgcgcc tcttcaaaaa actcaccggc tcaacgccgc
     1201 acaactatct cgccggtatt cgcgccgcac gggcccaact cctgctcgcc gaaacagagc
     1261 tctcggtcac cgagatcggc tctcgcgtcg gttatctcag cgcgagccat ttcacgaaag
     1321 cgtttcgtct cgccaccggc acaacgccgc gcgaatttcg caaggcgctc atctcagcga
     1381 ataacacctc agcaaacgag cgccaataat gcgcaagatt cgtcggttcg cttcgcgtgc
     1441 tcgttagtat catcgcggaa acttttcata ggagaaacgc gaatgcctgt tgccaagcaa
     1501 gcggaaatta gtccggctga aggaaaactc ggagttctac tcgtcggtct cggcgccgtc
     1561 agcactacgt tcatcgccgg tgtcgaagcg gtcaagaagg gtttcgcaca accaatcggc
     1621 agtctcacgc agatgggcac gatccgcctt ggcaaacgaa cagacaatcg cgttccgttg
     1681 attaaagact tcgtaccgct cgcgcagttg aaagatctcg tctttggcgc gtgggacatc
     1741 tttcctgagt ccgcttacga cgcggcgctc aacgccggcg tgctcgagaa agagttgctg
     1801 gcccaactga aggagccgct gcgcaagatc aaaccgatga aggccgtatt cgatcagtcg
     1861 tacgtgaaac gattgagcgg cgccaacgtg aaggaaggca agacgaagtt tgacctggcc
     1921 caacaactca tcgacgagat cgcggattgg aagaagaaga acaagtgctc gcggctggtg
     1981 atgatctggg ccgcgtcgac cgaaatcttt ttgaagccgc atccggtgca caagacgctc
     2041 gagtcgtttg aaaaagcgat gaaggaaaac cacaaggcga tcgcgccttc gatgatctac
     2101 gcttatgcgg cgttgaagtc gggtgttccc ttcgcgaatg gcgcgccgaa tctcacggtc
     2161 gacattcccg cgctgatgac tctggcagac aagaaccgcc tcgcgatctg cggcaaggat
     2221 ttcaagaccg gacagacgtt gatgaagacc atcatcgcgc ccggactgaa gtcgcgcatg
     2281 ctcgggttgc acggctggta ctcgaccaac attctcggca accgcgacgg cgaagtgctc
     2341 gacgatcccg attcgttcaa gaccaaggag gagtcgaagc tgtcagtgct ggagtacatc
     2401 ctgcagccgg aagtctatcc ggacctctac aaagacttct cgcacgtggt ccgcatcaat
     2461 tattacccgc cgcgcggcga caacaaggaa ggctgggaca acatcgacat cttcggatgg
     2521 ctcggctacc cgatgcagat caagatcgac ttcctgtgcc gcgactcgat cctggccgcg
     2581 ccgatcgtgc tcgatctcgc gctgttcatg gacctcgccg cgcgcagcgg catgagcggc
     2641 atccaggagt ggctctcgtt ctacttcaag agcccgcagg tcgcgccggg cctctatccg
     2701 gagcatgacc tcttcatcca gctcacgaag ctcaagaaca cgctgcgctg gatgcagggg
     2761 gaagagcaga tcacccatct ggggatcgag tactatcagg agcc
//
LOCUS       DASWTX010001310         1825 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_279498, whole genome shotgun sequence.
ACCESSION   DASWTX010001310 DASWTX010000000
VERSION     DASWTX010001310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1825
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279498"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1151)
                     /locus_tag="VGD38_19920"
     CDS             complement(<1..1151)
                     /locus_tag="VGD38_19920"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY0730363.1"
                     /translation="MTPERWQKVEEIFQAAVDLLPEERARYIAQVCANDTTLKRDVES
                     LLSQHDSAGELLDQPFYGNTEMSVLESFVEEEDPMLGRRLDRYRIEREIGRGGMGAVY
                     EASRADNEFNKRVAIKLVKRGMDTDFILRRFRKERQILAALDHPHIAGLIDGGTTPDG
                     LPYFVMEYIEGQPLYNYCDAHQLNITERLKLFRSICDAVHYAHQKEIVHRDIKPSNVL
                     VTSEGVPKLLDFGIAKLLNPQLAGDITHDPTATAMRLMTPEYASPEQVQGAPTTPSTD
                     VYSLGVLLYELLTGHRPYRLVNRAPHEIARVICEEAPAPPSVIITRAEDLLPSLYQGD
                     DAATLKKLYVSRGGTLEMIRRALTGDLDNIVMQALRKEPEWRYQTAAELR"
     gene            complement(1227..1799)
                     /locus_tag="VGD38_19925"
     CDS             complement(1227..1799)
                     /locus_tag="VGD38_19925"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0730364.1"
                     /translation="MNKHPSDNVTKLLIELSNGDRAAVDLLLPVIYDELRKLAANYLR
                     RERPDHTLQPTALVHEAYLRLVDQTRVNWQNRAHFFGVAAQIMRRLLVDHARKHNAEK
                     RGQDFKKLSLDENIDRAVERSAELIALDDALKTLATFDEQKARMVELRYFGGLSIEET
                     ADVMGVTPTTIKRHWRAAKAWLHGEMQRNV"
BASE COUNT          344 a          495 c          556 g          430 t
ORIGIN      
        1 cgcagttcgg cggctgtttg ataacgccac tcgggctcct tacgcagcgc ctgcatgacg
       61 atgttgtcga gatcgccggt gagtgcgcgc cggatcattt cgagtgtgcc gccgcgggag
      121 acgtacagtt ttttcaatgt cgcggcgtca tcgccctggt agagactcgg caacagatct
      181 tccgcgcgcg tgatgatcac gctgggcggc gccggcgctt cttcgcagat gacgcgcgcg
      241 atttcgtgcg gcgcgcgatt gacgagtcga tagggacgat gaccggtcag taattcataa
      301 agcagcacac cgagcgagta gacgtccgtg ctcggcgttg tcggcgcgcc ctgcacctgt
      361 tccggtgacg cgtattcggg cgtcatcaaa cgcatcgcgg ttgcggtcgg atcgtgcgtg
      421 atgtcgccgg cgagttgcgg gttcaataac ttcgcgatac cgaagtcgag cagtttcgga
      481 acaccttcgg acgtcacgag cacgttcgaa ggtttgatgt cgcgatgcac gatctctttc
      541 tggtgcgcgt agtggaccgc gtcgcagatc gaacggaaga gtttgagacg ttccgtgatg
      601 tttagttgat gcgcgtcgca ataattgtag agcggctggc cttcgatgta ctccatcacg
      661 aagtaaggca agccgtccgg cgtggtgccg ccgtcgatga gcccggcgat gtgcgggtga
      721 tcgagagcgg cgagaatctg tcgttccttg cgaaagcggc gcaggatgaa gtcagtgtcc
      781 atgccgcgct tcacgagttt gatcgcgacg cgtttattga actcgttgtc ggcgcgtgag
      841 gcttcgtaaa cggcgcccat gccgccgcgc ccgatctcgc gctcgatgcg ataccggtcg
      901 agacggcgcc cgagcatcgg atcttcttct tcgacaaacg actcgagcac gctcatctcg
      961 gtgttgccgt agaaaggctg atcgagaagt tcgccggcgc tgtcgtgttg tgaaaggagt
     1021 gactcgacgt cgcgtttcag cgtcgtgtcg ttggcgcaga cctgtgcgat gtagcgcgct
     1081 cgttcctcgg gaagcagatc gaccgcagcc tgaaatatct cttcaacttt ttgccagcgt
     1141 tccggggtca tgtcttactg gacgctttac tatcgctgta aagtaggaca acttcgatgc
     1201 agaaacggct ggactagcaa cgtacctcaa acatttcttt gcatttcacc atgaagccac
     1261 gctttggccg cccgccagtg acgtttgatg gtcgtgggag taacgcccat cacgtctgct
     1321 gtctcttcga tggagaggcc gccaaagtac cgcaactcaa ccatgcgcgc tttttgttcg
     1381 tcgaatgtcg ccagagtttt gagcgcgtcg tcgagcgcga tgagttccgc actccgttcg
     1441 acggcgcgat cgatattttc gtctaaggaa agtttcttaa aatcctgccc gcgtttttcc
     1501 gcattgtgtt tgcgggcgtg atccaccagc aggcgtcgca ttatctgggc cgcaacgccg
     1561 aaaaagtggg ctcggttctg ccagttgact cgcgtctgat cgaccaggcg caagtaagct
     1621 tcgtgaacca gagcagtcgg ttgcaaagtg tgatcggggc gttcacgccg cagataattc
     1681 gctgcaagct ttcgcagttc atcgtagatg acgggtagta aaagatcaac cgcggcccga
     1741 tcaccgttcg acaactcgat caggagtttt gtgacgttgt cagaggggtg tttgttcaat
     1801 cgttaactct ctcccgcgcg aggcg
//
LOCUS       DASWTX010001311         2024 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_237510, whole genome shotgun sequence.
ACCESSION   DASWTX010001311 DASWTX010000000
VERSION     DASWTX010001311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2024
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237510"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            151..846
                     /locus_tag="VGD38_19930"
     CDS             151..846
                     /locus_tag="VGD38_19930"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HEY0730365.1"
                     /translation="MTEANPLVSVIIPVYNGARFLLAALESVFAQTYRPIEVIVVDDG
                     SIDDSGAIAQSFTDLHYIRQMNQGVAAARNNGIEAAHGEFFAFLDQDDLWTPEKLKLQ
                     VDHLLNNPDLGYTLTQQQFFLEPGTALPAWFRKELLTTVHTGWVLGTLLVRRTTFNTV
                     GNFATGYTAANDSDWFFRAKAAEIPMAVVPELLLLKRIHESNDSGRAKQVLSELLKVV
                     KVSLDRQRVARTE"
     gene            858..1574
                     /locus_tag="VGD38_19935"
     CDS             858..1574
                     /locus_tag="VGD38_19935"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HEY0730366.1"
                     /translation="MKESPLVSVIIPVYNYERYLGEAVECVLSQTYQHHEVIVVDDGS
                     TDRSADVAKSFADRGVSYCHQVQAGIGPARNKGVELAHGEFLAFLDADDRWPREKTER
                     QLAAFENDPALEMVFGQAVQLQNGPEWEAGVNENKLPSSGLVPGMVAGTMLIKRDAFS
                     RVGEFPGGIKVGEFIDWYARAVQLQIRSLVMPDLFLYRRIHDSNTGVRERKSVTDYAR
                     VLKASLDRRRAEGRDVAKSS"
     gene            1627..>2024
                     /locus_tag="VGD38_19940"
     CDS             1627..>2024
                     /locus_tag="VGD38_19940"
                     /inference="COORDINATES: protein motif:HMM:NF018877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AGE family epimerase/isomerase"
                     /protein_id="HEY0730367.1"
                     /translation="MNSHGGYKVYDVGDRSWRAQIRSMISGRNDRGPKESMRGVISQS
                     RLLWVFSHAHLLGYSTPQHDYLRRAEHGYSYLIETMLDREYGGVYWKADVNRGVIEPL
                     KILYGQSMAIYALVEYHRASGLSEPLDYARS"
BASE COUNT          458 a          541 c          602 g          423 t
ORIGIN      
        1 tgtattgcag gcacgaccag aacatgacgc tgggaaaaac catgtcggag ctcaacctcg
       61 tgaaggcgct gaagagatca ctcgatcgcc gcagggagca ttcaggagtt gccgcagcac
      121 tgccgcagtt tccggccagg agtagcgcga atgactgaag caaatcccct cgtcagcgtg
      181 atcattccgg tttacaacgg cgcacgtttt ctactcgccg ccttggaaag cgtctttgcg
      241 caaacctatc gcccgatcga ggtgatcgtg gttgacgacg gttcgataga cgacagcggc
      301 gcgatcgcac aaagctttac cgacctgcac tacattcgac agatgaatca gggcgtcgcg
      361 gcggcaagaa acaacggcat cgaagccgcg cacggagaat tcttcgcgtt tctggaccag
      421 gacgatctct ggacacccga gaagctcaag cttcaggtgg accacctgct gaacaatccg
      481 gatttaggat acacgctcac gcagcaacag ttctttctcg aacccggcac cgctttgcct
      541 gcgtggttca ggaaggaact cttaactacg gttcacaccg gctgggtcct cggcacactg
      601 ctcgttcggc gaacaacatt caacacggtg ggtaacttcg ccaccggcta taccgcggcg
      661 aacgatagcg actggttctt ccgtgcaaaa gccgcagaga taccgatggc ggtcgtgcct
      721 gaattgctgc tgctcaaacg gattcacgaa tccaacgatt cgggccgcgc gaaacaagtt
      781 ttgtcggaac tgctgaaggt ggtgaaagtc tcgttggacc gtcagcgcgt cgctcgcacg
      841 gaatagaagg tgagaagatg aaagagagtc cgctcgtcag cgtaatcatt cccgtctaca
      901 actacgaacg ttatctcggc gaagcggtgg agtgtgtgct gagtcaaacc taccagcacc
      961 acgaggtaat cgtcgtcgac gacggctcga cggaccgtag cgctgatgta gcgaagagtt
     1021 ttgccgatcg cggcgtaagt tattgccatc aggttcaggc cggaattgga ccggcgcgaa
     1081 acaagggcgt ggagttggcc catggtgagt ttctggcttt tctcgacgcg gacgatcgtt
     1141 ggccgcgtga aaagacagag cgacaactcg cggcgtttga aaacgatccg gcgctcgaga
     1201 tggttttcgg tcaggctgtg caacttcaga acggtccgga gtgggaagca ggagtaaacg
     1261 aaaacaagct tccgagcagc ggcctggttc ccggcatggt cgcgggaacg atgcttatca
     1321 agcgcgacgc cttttcacgc gtcggcgagt ttccgggtgg aattaaagtc ggagagttta
     1381 tcgactggta tgcgcgtgcg gtccaattac agatccgttc gcttgtcatg ccggatctgt
     1441 tcctctaccg ccggattcac gattcgaaca cgggcgtacg cgagcgcaag tccgtgactg
     1501 attatgctcg agtgttgaag gcatcgctcg atcgaagacg tgcagaggga cgtgatgttg
     1561 caaagagctc ttgagtggga tgcactgctc agagaccgga tgctgcccta ctggtacaac
     1621 acgactgtga actctcatgg aggttacaaa gtttacgacg ttggcgaccg atcgtggcgc
     1681 gcccagattc gatcgatgat tagtggacgc aacgatcgcg gtccgaagga aagcatgcgc
     1741 ggtgtgattt cacagtcgcg attgctctgg gtgttttctc atgcgcacct gctcggttac
     1801 agcacgccgc agcacgacta cctcaggcgc gccgagcacg gatattcata tctgattgag
     1861 acgatgctgg atcgggagta cggcggcgtc tactggaaag ccgacgttaa ccgcggcgtg
     1921 attgaaccgc tgaagattct ctacggccag tcgatggcga tctatgcact cgtcgagtat
     1981 caccgggcca gcggcttgtc cgagccactc gattacgctc gttc
//
LOCUS       DASWTX010001312         2297 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_428616, whole genome shotgun sequence.
ACCESSION   DASWTX010001312 DASWTX010000000
VERSION     DASWTX010001312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2297)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2297)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2297
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_428616"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..213
                     /locus_tag="VGD38_19945"
     CDS             <1..213
                     /locus_tag="VGD38_19945"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEY0730368.1"
                     /translation="ERWHLTRARDVMRPIAPRFFVEPNATLDYARELMKRNGIGSLAV
                     VGKNGELVGFLQSGKFKRKKRVKQSG"
     gene            345..1190
                     /gene="cdaA"
                     /locus_tag="VGD38_19950"
     CDS             345..1190
                     /gene="cdaA"
                     /locus_tag="VGD38_19950"
                     /EC_number="2.7.7.85"
                     /inference="COORDINATES: protein motif:HMM:TIGR00159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004016 - adenylate cyclase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diadenylate cyclase CdaA"
                     /protein_id="HEY0730369.1"
                     /translation="MLLLLPYTEYLRRVVEPRNLADIVFVFLLVYAVLKLLRGTRAAP
                     MAAGIAALVFLYWLSIKQDLATLEFVLSNGLLYIGIAIIVLFQSEIRQALITFGNRFR
                     MPFSRHRGQFGEGVYDEVILAATTLASTKTGALIVIERNVGLKNVIDGGVQLDAELSY
                     DLLLSIFNTASPLHDGAVVVRRHRIAAASCFLPLTLNPRLSRDLGTRHRAAIGVTEDT
                     DAVAVVVSEETGLLSFVQKGEIKRGLDATKLQEALLDALGLLPKKEKEPQKATEQDAE
                     EIAPV"
     gene            1284..2240
                     /locus_tag="VGD38_19955"
     CDS             1284..2240
                     /locus_tag="VGD38_19955"
                     /inference="COORDINATES: protein motif:HMM:NF019561.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CdaR family protein"
                     /protein_id="HEY0730370.1"
                     /translation="MPFQDVDEIDETTVAAPAPSRLDKLVRRLFIEDWSLKLLSLAIA
                     LVLWLLVTGQNQPVTAHVNVQLNFIRPPSLEISNDPPRTVDVMLTGSRNKLDDLTTLD
                     LVATVDISDQRAGERVLRLADKAQISLPQGVKVDGFQPSAIPVRLEPIIERQVPIEPK
                     LEGQPADGYEVYAVRPNKGSVTLRGPETRVLALQRVQTESIYLGGHKETINATNVAID
                     VPDPKVDLMDPVVNVEVEIGQRRVERSISGVAVTATDGSRVQPATGSVSVLGPSSLVE
                     SLKAEDLKIVVDGNGPKLELPPSLNGKVSMKSIQPGKFLLDK"
BASE COUNT          514 a          629 c          661 g          493 t
ORIGIN      
        1 gaacggtggc atctcacccg cgcgcgcgac gtgatgcggc cgattgcgcc gcgattcttc
       61 gtcgaaccca acgccaccct tgattacgcg cgcgaactca tgaagcgcaa cggcatcggc
      121 tcgctggccg tcgtcggcaa gaacggcgaa ctggtcggct tcctgcaaag cggcaaattc
      181 aaacgtaaaa aacgcgtgaa acaatccggg taaactcccg attgtcttgg ctggattttt
      241 ccgcgataat ccgggcggag ctttcagtct ctaacccttg gagaaactaa gttgctgtcg
      301 ctacgccgag cgtcgagtac ccacgaagtt gataacacga agagatgtta ctgctactgc
      361 catacaccga gtatctgaga cgagtcgttg agccgcgcaa tctcgcggac atcgttttcg
      421 tctttttgct cgtgtatgca gtcttgaaac tcctgcgcgg cacccgcgcc gcgcccatgg
      481 ccgccggaat cgctgccctc gtttttctct actggctttc aatcaaacag gatctcgcga
      541 cgctcgagtt cgttctcagt aacggactgc tctacatcgg tatcgccatc atcgttctgt
      601 tccagtcgga aatccggcag gcgttgatta cgtttggtaa tcgctttcgg atgccgttct
      661 cgcgtcatcg cgggcagttt ggcgaaggtg tttacgacga agtgatactt gcggcgacga
      721 cgcttgcctc gacaaagacc ggcgcgctga tcgtgatcga gcgaaacgtc ggtttgaaaa
      781 atgtgatcga cggcggcgtg cagctcgatg cggagcttag ttacgacttg cttttgagta
      841 ttttcaatac tgcgagccct ttgcatgacg gcgcggttgt cgtgcgacgg catcgcatcg
      901 ccgcggcgtc gtgctttttg ccgttgacgc tgaatccgcg tctctcgcga gatttgggaa
      961 cgcggcatcg tgcggcgatt ggcgttactg aagacacgga tgcggtcgca gttgtcgtct
     1021 ccgaagaaac cggactgctc tcgttcgtgc aaaaaggtga aatcaagcgc ggcctcgacg
     1081 cgactaagct gcaggaagca ctcttggacg cgctgggttt gctgccaaaa aaagagaagg
     1141 aaccacagaa agcgactgaa caggacgccg aagagatcgc gcccgtctga ggtaagggcg
     1201 cccgttttga gttcaacctt taggttgttc ttttcagagc aagctaaagc ttgaactcat
     1261 aacgcagttc caaaacgaga cttatgccat tccaggacgt agacgagatt gatgagacta
     1321 cagtggccgc gccggcgccg agccgcctgg acaagctggt gcgccgactc ttcattgaag
     1381 actggagtct caaactgctc tcgctcgcca tcgcgctcgt gctgtggctg ctcgtcacag
     1441 gacaaaacca accggtcacg gcgcacgtaa acgtccagct caatttcatc cgcccgccgt
     1501 cactcgagat cagcaacgat ccgccacgca ctgtcgacgt gatgcttacc ggcagtcgaa
     1561 acaagttaga cgatttaacg acacttgatc tcgtggccac agtcgacatc agcgaccaac
     1621 gcgcaggcga gcgagttttg cgactcgctg acaaggcaca gatttcgttg ccgcaaggcg
     1681 tgaaggttga tggctttcaa ccgagcgcga ttccggttcg gctcgaaccg atcatcgaac
     1741 gccaggttcc gatcgagccg aagctggaag gccagcccgc agacgggtat gaagtctatg
     1801 ccgttcgtcc taataaagga tcggtaacgt tgcgcggccc cgagactcgc gtcctcgcac
     1861 tgcaaagggt gcagacggaa agtatctacc tgggcggaca taaagagacc ataaacgcga
     1921 caaacgtcgc gatcgatgtg cccgatccga aagtggacct gatggatccc gtcgtgaacg
     1981 tcgaggtcga gatcggccag cgccgcgtcg agagaagtat ttccggcgtt gcggttactg
     2041 cgactgacgg aagccgcgtg caaccggcga cgggttcggt aagcgtgttg ggaccgtcga
     2101 gtctcgtgga gtctttaaaa gcagaagatc tgaaaatcgt cgtggacggc aatggaccaa
     2161 agctggaatt gccgccgtcg ttaaatggaa aagttagtat gaagtcgatt cagccgggca
     2221 agtttctcct agacaaataa tgaaggctct tttcggaacg gacggtattc gcggcgaggc
     2281 cggacgtttt ccactcg
//
LOCUS       DASWTX010001313         3081 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_129546, whole genome shotgun sequence.
ACCESSION   DASWTX010001313 DASWTX010000000
VERSION     DASWTX010001313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3081
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129546"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1352
                     /locus_tag="VGD38_19960"
     CDS             <1..1352
                     /locus_tag="VGD38_19960"
                     /inference="COORDINATES: protein motif:HMM:NF014850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY0730371.1"
                     /translation="DPEQPRGKQSVTGIPQEIDYYCTTGIWQTVWLEPVPSVRLEELR
                     IITQAQRNIVDFMVYLHAPSSAWRIEVEVSDHGQLVTRGETRTAVATGHLSLNIPYAK
                     LWTPESPHLYDVTARLYDGNELLDEIRSYFGVRGIELRDAKFLLNGESVYLQMILDQG
                     YWPSGLLTAPSDEALQTDIGWAKAFGFNGVRKHQKIEDPRWLYWCDRLGVMVWEEMPN
                     AREWSLQAEERLSAEWQRAVRRDYNHPCIIAWVPVNESMGFPQLAQQHAGQYAFIERM
                     VRTTRRLDATRPVIDNDGWEHTDIADVCAIHDYSPSSAVLLKRYEKMLAGEGLPATVW
                     IGEKPLFARGSKYRGQPIMLSEVGGFLAIPPDIPPDQRDVLYRFYDSFEKPEELVEKY
                     RDLMKGISALVFLAGFCYTQLTDIEQEINGLLTYDRQPKVPAEEIAHIHREMLKRGS"
     gene            complement(1349..2110)
                     /locus_tag="VGD38_19965"
     CDS             complement(1349..2110)
                     /locus_tag="VGD38_19965"
                     /inference="COORDINATES: protein motif:HMM:NF021371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2071 domain-containing protein"
                     /protein_id="HEY0730372.1"
                     /translation="MKTPVTTRHPTDADRMAIRHRPGGQPVMHQDWGKLLFMHWRVDA
                     NLIRHLIPDALDIDLFGGNAWISIVPFTMWDIRAFPPFAPAVPGLNAMHELNVRTYVH
                     YRGVPGVWFFSLDVNSLVAATTARAFFHLPYHHAEIDFSGKRSFKFNSHRVSGEGDLK
                     ASWTIGDELPKALPGTRDFFLCERYCLYAESDGDIYRARIFHQPYPLREATLKNLETN
                     LFEVNRLPVPKDQPIIHYADEVNVDIWYLESVEDD"
     gene            2426..>3081
                     /locus_tag="VGD38_19970"
     CDS             2426..>3081
                     /locus_tag="VGD38_19970"
                     /inference="COORDINATES: protein motif:HMM:NF040140.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730373.1"
                     /translation="MRLDLGELDAKETREFKGFNDRLLACLPGLNEHQCSLGRPGGFV
                     QRLEEGTYFGHVVEHVAIELAALADVGANHGKTRHSGDPRVYNVAIEYKAEHASRYLL
                     EGAVRLVTAVLNSEVFPVGKEIWEAKQIAAQTELGPSTRAIVEAAERRNIPWRREGDE
                     SLVQLGYGKKRRYIQAAMTDRTSATAVELVQDKDYTKTLRSRAGIPVPEGRVVRSAAE
                     A"
BASE COUNT          683 a          879 c          885 g          634 t
ORIGIN      
        1 aagatccgga gcagccacgc ggcaagcagt cggtcaccgg tattccccag gagatcgact
       61 actactgcac cacgggaatc tggcaaacag tctggctcga accggtgccc tcagtgcggc
      121 tcgaagagtt gcgcatcatc acgcaggcac agcgcaatat cgtcgacttc atggtgtacc
      181 tccacgcgcc gtcgtcggcg tggcgcattg aagttgaagt gagcgatcac gggcagttgg
      241 tgacgcgtgg agaaactcga accgccgtcg cgactggtca tctcagcttg aacattccgt
      301 acgcaaaact gtggacgcct gagtcgccgc atctctacga cgtgaccgca cgcttgtacg
      361 acggcaatga attgctggac gagatcagat cgtactttgg cgtgcgcggc attgagctgc
      421 gtgatgcgaa gtttctcttg aacggcgaga gcgtttacct gcaaatgatc ctggaccagg
      481 gttactggcc gtcgggattg ctcaccgctc cgtccgacga agcgttgcaa accgacatcg
      541 gttgggccaa ggcgttcggc ttcaacggcg ttcgcaaaca tcagaagatc gaagacccgc
      601 gctggcttta ctggtgcgac cgcctcggcg tcatggtctg ggaagagatg ccgaacgcgc
      661 gcgagtggtc gctccaggcg gaagaacggt tatcggcaga atggcaacgc gccgtccgcc
      721 gcgactacaa ccatccgtgc atcatcgcgt gggtgccggt gaacgagagc atgggttttc
      781 cgcaactggc ccaacagcac gcgggccagt atgccttcat cgaacgcatg gtccgcacca
      841 cgcggcgtct cgatgcgacg cgtcccgtga tcgataacga cggctgggaa cacacggaca
      901 tcgccgacgt ctgcgcgatt cacgattact cgccttcgtc cgcggtgctg ctgaagcgtt
      961 acgagaagat gctggctggt gaaggtttgc cggcgactgt ttggatcggg gagaagccgt
     1021 tgttcgcgcg cggctcgaaa tatcgcggac agccgatcat gctttcagag gttggcgggt
     1081 ttctcgcgat tccgccggac attccgcccg accagcgaga cgtgctttat cgtttctacg
     1141 actcgtttga aaaacccgaa gagctggtcg agaaataccg cgacctgatg aaggggatct
     1201 ccgcgttagt ctttctcgcc ggcttttgct acacgcagtt gaccgacatc gaacaggaaa
     1261 taaacggtct actcacctac gatcgccaac ccaaagtccc cgccgaagag atcgcccaca
     1321 tccaccgcga gatgttgaaa cgcggttctt aatcgtcctc aactgactcg aggtaccaga
     1381 tgtcgacgtt cacttcatcc gcgtagtgaa tgatcggctg gtctttggga acaggcaggc
     1441 ggttgacttc gaacaaattc gtctcgaggt tcttcagcgt cgcttcgcgc aacgggtaag
     1501 gctgatggaa aatgcgcgcg cgatagatgt ctccgtcact ctccgcgtac aaacaataac
     1561 gctcacacag aaagaagtcg cgcgtgcccg gcaatgcttt cggcaactcg tcgccgatcg
     1621 tccacgaagc tttcagatct ccctcacctg aaacccgatg ggagttgaac ttaaaactcc
     1681 gcttcccgct gaaatcaatt tccgcgtgat gatacggcag atgaaaaaac gctcgcgccg
     1741 ttgtcgccgc taccagactg ttcacgtcca gtgaaaagaa ccaaacaccc ggcacgccgc
     1801 gatagtgcac gtaggtgcgc acgttcagtt cgtgcatcgc gttgagcccg ggcaccgccg
     1861 gcgcaaacgg cggaaaggcg cgtatgtccc acatcgtaaa aggcacgata ctgatccatg
     1921 cgttgccgcc gaagagatcg atgtccagtg catcgggaat cagatgccga atgagattcg
     1981 catccactcg ccagtgcatg aacagtagct tgccccagtc ctgatgcatg actggctggc
     2041 cgccgggccg atgccgaatg gccattcgat cggcgtctgt tggatgtctc gtcgtgactg
     2101 gtgtcttcat aaagatcttt ggtcagcgtt gagcaacttg ggtgccatcg tacacaacga
     2161 tctttgtacc tgtctcactg acttatcgcg gctgttttca atacatgtag aacttacctt
     2221 gatcgttcca agtacatgat acaacaggga ttatgtacga taccgtactt ccgtcttacc
     2281 gctctcatca taagctgcgc aggtaaatca agcacacgaa aattttgaat cgggcacagc
     2341 gttcgcttag ggcaggaaca tgcgtatcga gtcgatccga actctcgccg gaccaaatgt
     2401 ttatagtcac cggcctgttc tcttaatgcg tttagacctc ggcgagttgg atgcgaaaga
     2461 aactcgcgag ttcaaaggtt tcaacgatcg tttgctcgct tgcttacccg gactgaacga
     2521 gcaccagtgt agtctcggcc ggcccggcgg cttcgtgcaa cggctcgaag aaggaactta
     2581 cttcggtcac gtcgtcgaac atgtcgcgat cgaattggcc gcgctcgcgg acgtcggcgc
     2641 gaatcacggc aagacccgac actccggcga cccgcgcgtt tacaacgtcg cgatcgaata
     2701 caaagctgag catgcgtcgc gctatttgct ggaaggcgcg gtacggctcg tcaccgctgt
     2761 tttgaactcg gaagtgtttc ccgtcggcaa agagatctgg gaagcaaaac agatcgccgc
     2821 gcagacagag ctcggtccca gcacacgcgc gattgtcgag gcagccgaac ggcgaaacat
     2881 tccgtggcgg cgcgagggcg acgagagtct cgtgcagttg ggttacggca agaagcgtcg
     2941 ctacattcaa gccgcaatga ccgatcgcac cagcgcgacc gcggtcgagt tagttcagga
     3001 caaggactac acgaagacgt tgcggagtcg cgcgggcatt ccggttccgg aaggccgcgt
     3061 cgtgagatcg gcggctgaag c
//
LOCUS       DASWTX010001314         4005 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_129628, whole genome shotgun sequence.
ACCESSION   DASWTX010001314 DASWTX010000000
VERSION     DASWTX010001314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4005
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129628"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..578)
                     /locus_tag="VGD38_19975"
     CDS             complement(<1..578)
                     /locus_tag="VGD38_19975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730374.1"
                     /translation="MKFTRYSKFKGFDVSSINLGELMDSMSDALLDSGYDDDYYWTRQ
                     SRQTDTSLDALRRALLQALMDKGLVSEQQIREMLAENENKVEGSLLEQLLNQLIERLV
                     EEGYLTLHAEEPQQNARQQGPGGGQGEFSEPLPREVRFEVTEKGLDFLGYNTLRNLLG
                     SFGKSAAGRHDTVYLSTGVEAAAASKRYEFGDT"
     gene            complement(575..2041)
                     /locus_tag="VGD38_19980"
     CDS             complement(575..2041)
                     /locus_tag="VGD38_19980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730375.1"
                     /translation="MDYARTLRELKAVRYQTRSVKDELRDNLINKLRAGEKLFPGIVG
                     YNDTVIPQLVNAILSRHNIILLGLRGQAKSRIIRQLTELLDDRIPIIAGSEVNDDPFH
                     PISAYARETLAQQGDMTRIDWIDRDARFVEKLATPDVTVADIIGDVDPIKAAKGGHLL
                     SDELTIHYGLLPRANRGIFAINELPDLAGKIQVGLFNIMQEGDVQIKGYPVRLPLDVL
                     LVFSANPEDYTARGKIITPLKDRIGAEIMTHYAKELPVAIEITRQEAWTRRSQNSDVV
                     VPEFIREVVEQIAFEAREDNHVDKHSGVSQRMPITVMESLVSNAERRSLLTGDEPVVP
                     RIADVYAAIPSMTGKMELEYEGEQLGAHRIARELIKRAAGEIFEGYFVGIDFARAVQW
                     FDEGNKLLLTDTASADECKTLLDAVPELWETASIPFDFHSSETAKLVAACELVLEGLY
                     AENKISRNEEGTYTAVTKARKDRRGMIYDDLTETGKYS"
     gene            complement(2066..3466)
                     /locus_tag="VGD38_19985"
     CDS             complement(2066..3466)
                     /locus_tag="VGD38_19985"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY0730376.1"
                     /translation="MKRSEKLAFLGGYHAFPGGQIDASDAEADVRNSPDAVTSAMISG
                     AARELFEELGVLAARGGETLTKGQRASLLDDLDSGRMSWPALLKHYELYLDANDFTYV
                     GRWVTPPFNARRFDTWFFLVNCPEKQEPYLTTGELQDGEWITAEAAYERWLRDQVVAV
                     PPTLHALRTIAGGVSQDLVDRFLSNINAQGEIARRITFRPNYICFPVRTPTRPPATHT
                     CCYLIHTSQEILVVDPGSPYEDEQQALAECLDDMIAEGRRVREIIITHLHPDHIGGVN
                     VLKAHLGGDVPVASHRQTAEALREMNSDVHIDRFIEDGDVIKLDGEPQIKLNALHTPG
                     HARGHLCFHDADRGALLTGDNIVGVGSVLIDPPEGNMRDYLNSLQRMRSLPNLTVLFG
                     GHGPAVATPYQKIDEYISHRLERERNILEAVKEGATDPKQIVAKVYTDVSPKAYAMAE
                     RAVLAHLEKLREDGAI"
     gene            complement(3574..>4005)
                     /locus_tag="VGD38_19990"
     CDS             complement(3574..>4005)
                     /locus_tag="VGD38_19990"
                     /inference="COORDINATES: protein motif:HMM:NF012401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEY0730377.1"
                     /translation="EFMQLPPVRVFADFHCVTRWSRLDNVWSGVSTREIAKLVGIKPE
                     AKFVLALAYDYGWTTNVPLEYFLKEDSLFAWAHDGQPIEPEHGGPVRLIIPQLYAWKS
                     AKWVRGVRFLEEDQAGFWEQGGYHMRGVPWGPGDGERFRWS"
BASE COUNT          756 a         1169 c         1169 g          911 t
ORIGIN      
        1 gtgtcgccaa actcgtaacg cttgctggct gccgcggctt caacacccgt cgataggtaa
       61 accgtgtcgt gacgtccggc cgcgcttttg ccgaaactcc cgagcaggtt tcgcagtgtg
      121 ttgtaaccga gaaaatccag acccttttca gtcacttcga agcgtacttc gcgcggcaat
      181 ggttccgaaa actcgccttg tccgcctccg ggtccttgtt gtcgcgcgtt ttgttgcggt
      241 tcttccgcgt gaagcgttaa gtaaccttct tcgaccaagc gctcgatcag ttgattcaat
      301 aactgttcga gcagcgagcc ctcaaccttg ttttcgttct cggcgagcat ttcgcgaatc
      361 tgctgttcgc tgacgaggcc cttgtccatc agcgcctgaa gcagtgcgcg acgcagcgcg
      421 tcgagcgacg tgtcggtctg ccggctttgg cgcgtccagt agtaatcgtc gtcgtaaccc
      481 gaatcgagca gagcatcaga catgctgtcc atcaactcgc cgagattgat cgacgacacg
      541 tcgaagccct tgaatttcga gtaacgggtg aacttcaact gtattttcct gtttcggtca
      601 gatcgtcgta gatcatgccg cggcgatctt tccgcgcttt ggtgacggcg gtgtacgtgc
      661 cttcttcgtt gcggctgatc ttgttttccg cgtagagacc ttcgagcacc agttcgcacg
      721 ccgcgaccag tttcgctgtt tcgctcgagt gaaagtcaaa cgggatggac gcagtctccc
      781 acagttccgg cacggcgtcc aagagcgtct tgcactcgtc ggcggacgca gtgtctgtga
      841 gcagcagttt gtttccttcg tcaaaccatt gcacggcgcg cgcgaagtcg atgccgacga
      901 agtagccttc gaagatctcg cccgcggcgc gtttgatcaa ctcgcgcgcg atgcgatgcg
      961 cgccgagttg ttcgccttcg tactcgagct ccatcttgcc cgtcatcgac ggaatcgcgg
     1021 cgtaaacatc ggcgatccgc ggtacgaccg gctcgtcgcc agttaataaa gaacgccgct
     1081 ctgcattaga taccagtgac tccatcaccg taatcggcat gcgctgcgaa acaccggaat
     1141 gcttatcgac gtgattgtct tcacgcgctt caaacgcgat ctgttcgacc acttcacgaa
     1201 taaactccgg cacgacgacg tcgctgtttt gcgaacgcct ggtccacgct tcctggcgcg
     1261 tgatctcgat cgcgacgggc agctctttcg cgtagtgcgt cataatctcg gcgccgatgc
     1321 gatctttcaa cggagtgatg atcttgccgc gcgccgtgta gtcttccggg ttcgccgaga
     1381 agacgagcag cacgtcgaga ggcaggcgca cgggataacc cttaatctgc acgtcgcctt
     1441 cctgcatgat gttgaagagt ccgacctgaa tcttgcccgc gagatccggc agctcgttga
     1501 tggcgaagat gccgcggttc gcgcgtggca gcagaccgta gtgaatcgtc agttcatcac
     1561 tcagcaggtg accgcccttc gcggctttga tcggatcgac gtcgccgatg atgtcggcca
     1621 cggtcacgtc aggcgtcgcg agtttttcga cgaagcgagc gtcgcgatcg atccagtcga
     1681 tgcgcgtcat gtcgccttgt tgtgcgagcg tctcgcgcgc gtaagccgag atcgggtgaa
     1741 acggatcgtc gttcacttcc gaaccggcga tgatcgggat gcgatcgtcg agcagctccg
     1801 tcagttggcg gatgatgcgg ctctttgcct ggccgcgcag accgagcagg atgatgttgt
     1861 gacgcgacag gatcgcgttg acgagttgcg gaatgacggt gtcgttataa ccgacgatgc
     1921 cggggaatag tttctcgccg gcccgtagtt tattgatcag gttgtcgcgc agttcgtctt
     1981 tgacggaacg ggtttgatac ctgaccgctt tgagttcgcg aagggttcgt gcgtaatcca
     2041 tttctttagg taggagagat tctatctaaa tcgccccgtc ttcgcgcaac ttttccaggt
     2101 gcgcgagcac agcccgttcg gccatggcgt atgctttggg cgagacgtca gtgtagacct
     2161 tcgcaacaat ttgtttcgga tctgttgcgc cctctttgac tgcttccagt atgtttcgct
     2221 cgcgttccag cctgtgtgag atgtactcgt cgatcttctg atacggcgtg gcgacggcgg
     2281 gaccgtggcc gccaaacagc accgtcaggt tgggcagcga gcgcatacgc tggagtgaat
     2341 tcaggtagtc gcgcatgttg ccttcgggcg gatcgatcag gacagaacca acgccgacga
     2401 tattatcgcc cgttaacagt gcgccccgat ctgcgtcgtg aaaacacaga tgaccacgcg
     2461 cgtgtccggg tgtatgtagc gcattcaatt taatctgtgg ttcgccgtcg agcttgatca
     2521 cgtcgccgtc ttcgatgaag cgatcgatgt gaacgtcgct gttcatctcg cgcagcgctt
     2581 cagccgtttg ccgatgagac gcgaccggaa catcgccgcc gagatgtgct ttcaaaacgt
     2641 ttacgccgcc gatgtgatcc ggatgcagat gcgtgatgat gatttctcgc acgcgcctgc
     2701 cttccgcgat catgtcgtcg agacactcgg ccaatgcctg ttgctcgtct tcgtaaggcg
     2761 aacccggatc gacgaccagg atctcttgcg acgtgtgaat caggtaacag caggtgtgtg
     2821 ttgccggcgg acgcgtcggc gtgcgaaccg ggaaacagat gtagtttggc cggaaggtga
     2881 tccggcgcgc gatctcgccc tgtgcgttga tgtttgaaag aaagcgatcg acgagatcct
     2941 gcgagacgcc gccggcgatg gtgcgtaacg cgtgtaacgt cggtggaact gcaacgacct
     3001 gatcgcgcag ccagcgttcg taagcggctt cggccgtgat ccattcgccg tcctgaagct
     3061 cgccggtagt tagatacggt tcctgtttct ccggacagtt aacgagaaag aaccacgtat
     3121 cgaagcggcg cgcgttgaac ggcggcgtga cccagcgtcc gacgtacgtg aagtcgttgg
     3181 cgtcgagata cagttcgtaa tgcttcagca acgcgggcca cgacattcgt cccgagtcga
     3241 gatcgtcgag caacgaagcg cgttgacctt tcgtgagcgt ctcaccgccc cgcgccgcca
     3301 gcacgcccaa ctcttcaaac agttcgcgtg cggcgccgct gatcatcgcg gacgtcacag
     3361 cgtccggcga gttgcgcacg tcggcctccg cgtcactcgc atcgatttgg ccgcccggaa
     3421 acgcatgata accaccgaga aacgcgagct tttcgcttcg tttcacccag taaacttcgg
     3481 gcctctgtgg gtctgtatcc tgccggagaa gaataaccgc ggcagcgtct ttaggaatag
     3541 gtcctatagg accaatagga cctatttttt ctttcacgac cacctgaatc tctcgccgtc
     3601 gccggggccc cagggcacgc cgcgcatgtg gtagccgcct tgttcccaaa atcccgcctg
     3661 gtcttcctcg aggaagcgca cgccgcgcac ccatttcgcc gatttccacg cgtagagttg
     3721 cgggatgatc aggcgcactg gtccaccgtg ctcgggttcg atcggctggc cgtcgtgggc
     3781 ccacgcgaag agcgagtctt ctttcaaaaa gtattcgagc ggaacgttcg tggtccaacc
     3841 gtagtcgtaa gccaaagcaa gcacaaactt cgcttccggt ttgatcccga cgagcttcgc
     3901 gatctcgcgc gtcgagacgc cgctccagac gttgtcgagc cgcgaccagc gcgtgacgca
     3961 atgaaagtcg gcgaagacgc gcaccggcgg aagctgcata aactc
//
LOCUS       DASWTX010001315         2303 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_428684, whole genome shotgun sequence.
ACCESSION   DASWTX010001315 DASWTX010000000
VERSION     DASWTX010001315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2303
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_428684"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..960)
                     /locus_tag="VGD38_19995"
     CDS             complement(<1..960)
                     /locus_tag="VGD38_19995"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HEY0730378.1"
                     /translation="MRKEVEGLEEQLAEARRSVLDLEINTALLKAEAKKRGIDSHRLY
                     ETEVSKRATMPTQAQIKKFIDENASQFAGMDPQTANQQVAVYLHDELESKLADDLVKR
                     LRQTIPVVMGVDVNSPNLSDDAVLATVGGQPLKASLLKERLKPIVYKIQIETYMHAKR
                     QADQMVDNMLLLDEARKRQIGPEEIIRAEISDKVRPPTEAQVAKFYEENKTRINGDLN
                     SVRNQIALYLQEEEKRRLEGELSSRLRKNADVRWLMTEPVQPVQNVSVDDDPSRGNAT
                     APVTIVEFTDFQCPACAAMHPVLEEVLKSYGDKVRFVVRDFPLS"
     gene            998..1237
                     /locus_tag="VGD38_20000"
     CDS             998..1237
                     /locus_tag="VGD38_20000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730379.1"
                     /translation="MTTTMGLGVVGRAAWRAGVGVAVVVAAGGCAMGRGVADGVGLRF
                     AGGLRFVWPADADDRASKTIRDRRLKEVFIPKLGV"
     gene            complement(1397..>2303)
                     /locus_tag="VGD38_20005"
     CDS             complement(1397..>2303)
                     /locus_tag="VGD38_20005"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY0730380.1"
                     /translation="DKALMEYTAASYHFEQAGHKRFQGRVENNVGFLFATLGRFSEAQ
                     EHLTRARTLLVSAGDKGGAATVEDSRAQAFLLEGKNELAESSARSAVRLLKEGGEQTL
                     LAEALTTHGKALARLNQLPKARVTLDQAIDIAQTAGHLESGGIAAVTAIEELNTHLTL
                     KVLQEYYRTAEELLTQSQNRSLKMRLGECARRVLAAEFASVRGEGVGASQAAGAASAV
                     GAERLGGVPAMPPGFSLDAEVLRYEGSLIRKALEDSGGSVTRAARMLGVTHQGLAFIL
                     NGRHSDLLSIRTPVKKRRRSIMRNH"
BASE COUNT          434 a          642 c          655 g          572 t
ORIGIN      
        1 gctcaacgga aaatcgcgca cgacgaaccg caccttgtcg ccgtaagact tcaacacttc
       61 ttcgagcacc ggatgcatcg cggcgcaagc cggacactga aagtcagtaa actcgacgat
      121 cgtcacgggc gccgtggcat taccgcgtga cgggtcgtcg tcgacgctca cgttttgcac
      181 gggctgcacg ggctcagtca tcagccagcg aacgtctgcg ttcttgcgca agcgactgga
      241 gagctcgcct tccagacgcc gcttctcttc ttcctgaagg tagagcgcga tttgattgcg
      301 cacgctgttc agatcgccgt tgatgcgtgt cttgttttcc tcgtagaact tcgcgacttg
      361 agcttcggtc ggcggacgca ccttgtcgct gatctcggcg cgaataatct cctctggtcc
      421 aatctgacgt tttcttgctt cgtcgagcag cagcatgttg tcaaccatct gatctgcttg
      481 tctcttcgcg tgcatgtacg tttcgatctg gatcttgtag acgatgggtt tgagtcgttc
      541 cttcagcaga ctggctttca acggctggcc gccgacggtt gcgagcacag cgtcgtcgct
      601 gaggtttggt gaattgacgt cgacacccat gacgacggga atggtctggc gcaaacgttt
      661 gactagatcg tcggcgagtt tgctttcgag ttcgtcgtgc aggtagaccg cgacttgttg
      721 attcgcggtt tgcggatcca tgcctgcgaa ctgcgacgcg ttctcgtcga tgaacttctt
      781 gatctgcgcc tgagtgggca tggtggcgcg cttgcttact tcagtttcgt aaaggcgatg
      841 gctgtcgatg ccgcgcttct ttgcttcggc tttgaggagc gccgtgttga tctcgagatc
      901 gagcacgctg cgacgagctt cggcaagctg ctcttccagg ccttcaactt ccttacgcac
      961 tgcgggatcg agatcggagc ttgtaaatgt ttggccgttg actacgacga tgggtttggg
     1021 cgttgttggg cgtgcggcct ggcgcgcggg tgtgggagtt gcggttgtcg tagcggcggg
     1081 tggttgtgca atgggccgtg gcgttgcgga tggagttggt ttgcgattcg ctggtggtct
     1141 acgttttgtt tggccggctg atgcggacga cagggccagt aagacgatca gggatagaag
     1201 gctgaaggaa gttttcatac cgaagctcgg ggtttaagtg aatatgaatc tcgatcttaa
     1261 ttagagcaca aacacacgat tggcgctgcc tgttggggca gcgccaaggt tgggattgcg
     1321 tatgaactcg actaaaacgt taatcgttgc gcgatgaatg gttgcgcatg aaacgttaat
     1381 ggttgcgcat gacacgctaa tggttgcgca tgatgctacg cctgcgtttc ttgactggag
     1441 ttcggatcga taggagatcg ctgtgacgtc cgttgagaat gaaggcgagg ccttggtgcg
     1501 tgacgccgag catgcgtgcg gcgcgcgtga cgctgccgcc tgaatcttcg agcgccttgc
     1561 ggatcaagct gccctcataa cggagcactt cggcgtcgag cgaaaaaccc ggcggcatcg
     1621 ccggcacgcc acccaacctc tccgctccca ccgcactcgc ggcacccgcc gcctgcgacg
     1681 ctccaacccc ttccccccta acactagcaa actccgccgc caacaccctc ctcgcacact
     1741 cccccaaccg cattttgaga ctgcgatttt gcgactgtgt tagcagttct tcagcggtcc
     1801 gatagtattc ttgaaggacc ttgagagtta aatgagtatt cagctcctcg atagccgtta
     1861 ccgcagcaat tccgccactc tctaaatgac cggcagtctg tgcaatatcg attgcttggt
     1921 ccaacgttac tctagctttt ggcaactggt tcaggcgcgc cagtgctttt ccatgggtag
     1981 tgagggcttc cgcaagtaac gtttgctcac caccttcctt cagcaagcgt actgcggatc
     2041 gagcagagct ctcagctaac tcattctttc cctcaagcag gaatgcttgc gcccggctgt
     2101 cttcaaccgt cgcggcacca cctttatcgc cagcactaac taacaacgtt cgcgcacgcg
     2161 tcaaatgctc ttgggcttca ctgaaacgac ccagcgtcgc aaacagaaaa cctacgttgt
     2221 tctcgacgcg cccttgaaac cgcttgtgcc cagcttgctc gaagtgataa ctggcagccg
     2281 tgtattccat aagggcctta tct
//
LOCUS       DASWTX010001316         4411 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_189631, whole genome shotgun sequence.
ACCESSION   DASWTX010001316 DASWTX010000000
VERSION     DASWTX010001316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4411)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4411)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4411
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189631"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..329
                     /locus_tag="VGD38_20010"
     CDS             <1..329
                     /locus_tag="VGD38_20010"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0730381.1"
                     /translation="RSRGIDRLRTLAARERVAVAGAKDEAQAVSDAASDAFRSEQRGL
                     VTNALAQLPDEQQHPLMLAYFDGLTQTEIAARLGAPLGTVKTRMRTGMMKLRELLAGK
                     NESFGF"
     gene            319..1047
                     /locus_tag="VGD38_20015"
     CDS             319..1047
                     /locus_tag="VGD38_20015"
                     /inference="COORDINATES: protein motif:HMM:NF021604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor"
                     /protein_id="HEY0730382.1"
                     /translation="MDFNVAMVHDDYKEMIPAHALSALDAADARALTEHLAECAECRR
                     DLAEWEATAASLALGTDPMEPSPEVREKILNKIRSESPSKVVPFPSPRRRMWGAIAAT
                     LLLFALLVSLFVLWQQNRELRRQNQIAQVLNAAGSKVIELSGTNEASGATAKLAYDPT
                     GRAVLIANGLPRTPAGKEYQLWFIVDNKPIPGKTFAPDDSGQSTLQDQVPEAARRSAI
                     FAITLEPSGGVPSPTGAIYLRGEL"
     gene            1134..1337
                     /locus_tag="VGD38_20020"
     CDS             1134..1337
                     /locus_tag="VGD38_20020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730383.1"
                     /translation="MNNREQRKKEPPPIDNSVSDSTGQYDLRFVLWRQFCAEYNIPVD
                     TLPSQLENEHKDRWEEMKSKRLR"
     gene            complement(1351..2022)
                     /locus_tag="VGD38_20025"
     CDS             complement(1351..2022)
                     /locus_tag="VGD38_20025"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY0730384.1"
                     /translation="MIIEELTVTAFQQHTRIVGCETTRQAICIDPGDEAELIVETLER
                     LGLNLQAIALTHAHLDHVGGVAALKKLKPDAKINLHKADEFMYTGLPEQPAWIGIPRS
                     QWTALGFDFEQPPPVDEYWTDGEMFEVGELKFEVLHCPGHTPGHVVLYAPHERKVFVG
                     DVLFAGSIGRTDLPGGSMEQLLDSIKNKLLSLDDDVTVYSGHGPLTTIGEERLTNPFL
                     TGRYV"
     gene            2051..3136
                     /gene="amrS"
                     /locus_tag="VGD38_20030"
     CDS             2051..3136
                     /gene="amrS"
                     /locus_tag="VGD38_20030"
                     /inference="COORDINATES: protein motif:HMM:TIGR04337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AmmeMemoRadiSam system radical SAM enzyme"
                     /protein_id="HEY0730385.1"
                     /translation="MPISSTSAPLADVLDSMTAEGAPELTEHLDAGALKCYACGHRCL
                     IKPGKRGICKVRFNEDGHLRVPVNYVAALACDPTEKKPFFHVLPGSDTLTFGMLGCDL
                     HCAYCQNWLTSQALRDDSAGTSPTMVTAERLVTMAKTYGAAMVGSSYNEPLITAEWAV
                     DVFKKARPEGFKTAFISNGNATPQVLDYLRPWTDCYKIDLKSMNDKNYRQLGGVVDNI
                     LDTVKMVHELGFWEEIVTLVIPGFNDSEDELRSAADYIASVSPDIPWHVTAFHQDYRM
                     TENSHTTAEQLIRACEIGREAGLRYIYAGNLPGRVGRWENTYCPSCDELLVERFGYLI
                     RQVNVTREGHCPTCSTTIPGIWSTELY"
     gene            complement(3130..3678)
                     /locus_tag="VGD38_20035"
     CDS             complement(3130..3678)
                     /locus_tag="VGD38_20035"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY0730386.1"
                     /translation="MKTNVLPAALVVCGLLMVLSLAGCERAAAPTNLAAGNAAASPTP
                     EKIDTAAIEAEINKLERDWASSPKNRDAETVRRVLAEDIVITYPDGQTGTKADEVRTI
                     ESGAITMDSWELLDTKVTVLNADTAFITGRGVIKNGKYKDPNTNQTTNISGEFRFLDV
                     YARRNGKWQAVASQTTPIKKPQ"
     gene            3883..4383
                     /locus_tag="VGD38_20040"
     CDS             3883..4383
                     /locus_tag="VGD38_20040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730387.1"
                     /translation="MTHRFRASGPLGLNRLLLVFIVLFVSNVALAQTTRTAPTAGKDD
                     APVFQEYRGIQIGWLADDVRKKLGNPANKGEVEDFYVFGNGDNERAQIIYDKTTRKVT
                     TISVDFMNGATDVITPQQVFGADVETKPDGSKHKLVRYPKAGFWVSYSRTAGDTPIIS
                     VMIQKM"
BASE COUNT          978 a         1298 c         1221 g          914 t
ORIGIN      
        1 cgcgcagccg cggcatcgac aggctccgaa cccttgccgc acgcgagcgc gtggcggttg
       61 cgggcgcaaa agacgaggcg caagcggtgt ctgacgccgc cagtgatgcg ttccggtcag
      121 aacagcgcgg cctggtaaca aacgcgttgg cccaactccc cgacgagcaa cagcacccgt
      181 tgatgctcgc ctattttgac ggactcactc aaacagaaat tgccgcgcgc ctgggagcgc
      241 cgctggggac ggtgaagact cgcatgcgaa cgggcatgat gaagttgcgc gagttgctgg
      301 ccggcaagaa cgagagtttt ggattttaac gtggcgatgg tgcacgacga ctacaaagag
      361 atgatcccgg cgcacgcgct gtccgcgctc gacgcggccg acgcgcgcgc gctcaccgaa
      421 catctcgccg aatgcgccga gtgccgccgc gatctggctg agtgggaagc aacggctgca
      481 agtctcgcgc tgggtactga tccaatggaa ccatcacccg aagtccgcga aaaaatcctg
      541 aataaaatcc gttctgaatc cccgtctaaa gtagttccgt ttccaagccc tcgtcgaaga
      601 atgtggggtg caattgccgc caccttactt ttattcgctt tgctcgtttc gttgttcgtg
      661 ttgtggcagc agaaccggga attacggcga cagaaccaaa tcgctcaagt gctgaatgca
      721 gcaggatcga aagtgataga actctccggc accaacgaag cctccggcgc aacagcaaaa
      781 ctcgcttacg acccaaccgg ccgcgccgtc ctgatcgcca acggcctgcc acgcacacct
      841 gcaggcaagg aataccaact ctggttcatc gtcgacaaca aaccaatccc gggcaaaacc
      901 ttcgcacccg acgacagcgg ccaaagcacg ttacaagacc aggtgcccga agccgcgcgc
      961 cgctcagcca tcttcgcgat cactctcgaa ccctccggcg gagtgccatc accaaccggc
     1021 gcgatctacc tccgtggcga gctctaatcc gagtctgaag aaggacatcg ccgagaaata
     1081 attgtgaaaa gctgctacac ttccgccaac tgattgaggc aggttaggaa gtgatgaaca
     1141 acagggaaca gcggaagaaa gaaccaccac caatcgacaa ctcggtctcg gattcgaccg
     1201 gccaatacga tctgcggttt gttttgtggc gccagttttg cgccgagtac aacataccgg
     1261 tcgacacttt acccagccag ttggaaaacg aacacaaaga ccggtgggaa gagatgaaat
     1321 ccaagcgtct ccgctgacct gtttgacagc ctatacgtag cggccggtca gaaatgggtt
     1381 agtcaggcgc tcctcgccaa tcgtcgtgag cggtccgtgt cctgagtaaa ccgtcacgtc
     1441 gtcatccagc gaaagcagtt tgtttttgat cgaatcgagt agctgttcca tcgatccgcc
     1501 cggcagatcc gtgcgcccga tcgaacccgc aaacagcacg tctccgacaa acaccttacg
     1561 ttcatggggc gcgtacaaaa cgacgtgacc cggcgtgtgg ccgggacagt gcaacacttc
     1621 aaacttcagc tcgccgacct cgaacatctc accgtcagtc caatactcat caaccggcgg
     1681 cggttgttcg aaatcgaatc caagcgccgt ccactgcgaa cgcggaatcc cgatccacgc
     1741 gggctgttcc ggtaatcctg tgtacatgaa ctcgtcggct ttgtgcaggt tgatcttggc
     1801 gtccggtttc agcttcttca gcgccgccac gccgccgacg tgatcgagat gcgcgtgcgt
     1861 cagcgcaatc gcctgcaggt tgagaccgag ccgttcgaga gtttcgacga tgagttccgc
     1921 ttcatcgccg gggtcgatgc agatcgcctg gcgcgttgtt tcacagccaa cgatgcgtgt
     1981 gtgttgttga aaggccgtga cggttagttc ttcgataatc atttggctaa aatataccgc
     2041 gtaattagca atgccaataa gcagtaccag cgcgccactc gcagatgtcc tcgattcgat
     2101 gacggccgag ggtgcgcccg aactcaccga acatctcgac gccggcgcac tgaagtgtta
     2161 tgcctgcggt caccgctgtc taatcaagcc cggcaaacgc ggcatctgta aagtccgttt
     2221 caacgaagac ggccacttgc gcgtgccggt gaactacgtc gcggcgctgg cgtgtgatcc
     2281 gacggaaaag aaaccgttct tccacgtgct tcccggttcc gacacgctga cgttcggcat
     2341 gctcggttgc gatcttcatt gcgcgtattg tcaaaactgg ctcacgtcgc aggcactgcg
     2401 cgacgactcg gccggaacga gccccacaat ggtaaccgcc gaacgcctcg tgacgatggc
     2461 gaagacttac ggcgccgcaa tggtcggcag cagttacaac gaaccgctga tcacggccga
     2521 atgggccgtt gatgttttta agaaagcacg tcccgaaggt ttcaaaaccg cgttcatctc
     2581 gaacggcaac gcgactccgc aagtgctcga ttacctgcgg ccttggaccg actgttacaa
     2641 gatcgatctg aagtcgatga acgacaagaa ctatcgtcag ctcggcggcg tggtcgacaa
     2701 cattctcgac accgtgaaga tggtccacga actcggtttt tgggaagaga tcgtgacgct
     2761 cgtgatcccg ggtttcaacg attcggaaga tgaactacgc agcgcggcag attacatcgc
     2821 ctcagtttca cccgacattc cgtggcacgt caccgcgttt catcaggact accggatgac
     2881 tgagaactca cacacgaccg ccgagcaatt gattcgtgcg tgtgagattg ggcgtgaggc
     2941 gggactgcgt tacatctacg cgggaaatct tccgggaaga gtgggacgct gggaaaacac
     3001 ttactgccca tcgtgcgatg aactcttagt cgaacgattc ggctatttga ttcgccaggt
     3061 caacgtcacg cgtgaagggc actgtcccac ctgttcaacc accattcccg gaatttggtc
     3121 caccgaactt tactgaggct ttttgatcgg cgtcgtttgg gaggctaccg cctgccactt
     3181 gccgttacgc cgcgcgtaca catccagaaa acgaaactcg ccgctgatat tggtcgtctg
     3241 gttggtgttc gggtctttgt acttgccgtt cttgatcacg ccgcggccgg tgatgaatgc
     3301 agtgtcggca ttcagcacgg tgactttcgt gtcgagcagt tcccacgagt ccatcgtgat
     3361 cgcgccgctc tcgatcgtcc gcacttcgtc agccttggtt ccggtttggc cgtcgggata
     3421 ggtgatcacg atgtcttcgg ccaatacgcg ccgcacggtt tcagcgtcgc gatttttcgg
     3481 cgagcttgcc cagtcgcgtt cgagtttgtt tatctctgct tcgatcgcgg ccgtgtcgat
     3541 cttttccggc gtcggactcg cggccgcgtt gcctgccgca agattggtcg gcgccgctgc
     3601 gcgctcacag ccggccagcg ataggaccat caatagacca cacaccacga gtgctgctgg
     3661 cagcacgttt gtcttcatca agtttttggc tccttcggtc ttagaagatt agggcaagac
     3721 gggtattcta acagtgctcg ccagacattg acatcggaat ttccgcggat tattgttccg
     3781 cgaaagtgaa cccgtcggac gaacttaacg ggcgctccgc cggtctcatt cctacccgct
     3841 tggtgtgtaa agaacatttt attcctggaa aggagtaaac caatgactca ccgctttcga
     3901 gcttcaggac cgctgggatt aaaccggctt ctgttagttt tcatcgtgct cttcgtctca
     3961 aacgtcgccc tcgcgcaaac gacgcgaact gctccgacag ccggaaagga cgatgcgcca
     4021 gtcttccaag aatatcgcgg cattcagatc ggctggctcg ccgacgacgt gcgtaagaaa
     4081 ctcggcaacc cggccaacaa aggcgaggtt gaggatttct acgtcttcgg caacggagat
     4141 aacgagcgag ctcagattat ttacgacaag acgacgcgca aggtgaccac gatctcggtt
     4201 gacttcatga acggagcgac tgacgtgatc acgccgcaac aggtgtttgg cgccgacgtc
     4261 gagaccaaac cggacggatc gaagcacaaa ctcgtgcgct atccgaaagc cgggttttgg
     4321 gtctcgtaca gccgcaccgc gggcgatacg ccgatcatct cggtcatgat ccagaagatg
     4381 tagccgggcg ccacggatta cacagattct c
//
LOCUS       DASWTX010001317         3808 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_189637, whole genome shotgun sequence.
ACCESSION   DASWTX010001317 DASWTX010000000
VERSION     DASWTX010001317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3808
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189637"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..448
                     /locus_tag="VGD38_20045"
     CDS             <1..448
                     /locus_tag="VGD38_20045"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018053051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008175 - tRNA methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HEY0730388.1"
                     /translation="LVEPEIPPNTGNIARLCAATNVPLHIVGVTGFRMDDRAVRRAGL
                     DYWPHVQLSRHTNLESLRQSLPGARFVYLTTKADRVYTDWTFQPGDCLVFGPETRGLP
                     EDLLRRNWDNCLRIPMFNPNVRSLNLATAVGIVLYEALRQTNHGLL"
     gene            457..2277
                     /gene="typA"
                     /locus_tag="VGD38_20050"
     CDS             457..2277
                     /gene="typA"
                     /locus_tag="VGD38_20050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016448881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEY0730389.1"
                     /translation="MSERKNIRNIAIIAHVDHGKTTLVDAMLRQSGTFRENEQVRERV
                     MDSMDLERERGITIMAKNTAVRYRDVKINIVDTPGHADFGGEVERVLKMVDGVMLLVD
                     AAEGCLPQTRFVLRKALEARLPAIAVVNKIDRGDARPEEVVNEIYELFLDLDATDEQI
                     EFPILYAVSRDGTAKHKLDDHSTNLQPLFDQIVETIPAPRELRSDSLQLLVANLDYND
                     YVGRLAIGRIFSGEIKVGDQITVVKPDRTSHKTKVSQLYVFEGLKRESVDKAGFGEIV
                     ALAGIENINIGDTITSVENPHPLPSIAVDEPTIAMIFGVNNSPFAGRDGKYVTSRQVK
                     ERLDKEILGNVAIRVEETESPDQFKVSGRGELQLAILIEMMRREGYELQVSKPEAITR
                     NVDGQLLEPIEAVVVDCPDEFIGVVTEALGRRKGQMTKMINHGTGRVRLEFEAPSRGL
                     IGFRNEFLTETKGTGLLNTMFLRWGEWQGTMRGRATGSLVADRTGDTTTYALFNLQER
                     GTLFARPGTKVYEGMIIGENARAVDLDVNAVKEKKLTNMRASTADEAMRLVPPKELSL
                     EQALEFIADDELVEVTPQTIRLRKRVLPANQRPKKKESAE"
     gene            2281..2865
                     /gene="thiE"
                     /locus_tag="VGD38_20055"
     CDS             2281..2865
                     /gene="thiE"
                     /locus_tag="VGD38_20055"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEY0730390.1"
                     /translation="MRSLFRLPQVYPITDTKISGLSHADQVAVFAERGATVVQLREKR
                     ATALEFYESAKAALAVAVERGVQLIVNDRVDIALAIGAAGVHLGQDDLPPEVARRLLG
                     DDAVIGYSTHSVAQALEASSLPIDYLAIGPIFATSTKETPDPVVGLEGLRAVREAIGS
                     LPLVAIGGLTPVNTADVLAVGADSVAMISGLWSR"
     gene            3012..>3808
                     /locus_tag="VGD38_20060"
     CDS             3012..>3808
                     /locus_tag="VGD38_20060"
                     /inference="COORDINATES: protein motif:HMM:TIGR01420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HEY0730391.1"
                     /translation="MSFFDLPPIIERMLLVSDKISDLNFSVGQVPQVEINGKLTPVQP
                     LGMQKLSPYQTEIIAMTLMHGHPDAAEKLARTGTADLSYSLPSRARFRVNIFQQRGVY
                     SIVMRVIPTEIPTLKSLGLPPHLSEIAELRNGLVLVTGPTGSGKSSTQAAIIDIVNEK
                     KQYHIVTIEDPIEYLHLHKQSTINQREVGHDTRDFPSALRATLRQAPKVILIGEMRDF
                     ETTEIALEAAETGHLVLSTLHTIDASKTVDRIIGLYPKNEEQVIRTRL"
BASE COUNT          817 a         1191 c         1096 g          704 t
ORIGIN      
        1 tctggtagaa cccgaaattc caccgaacac cggtaacatc gcgcggctct gcgcggcgac
       61 caatgttccg ctgcacatcg tcggcgtcac tggctttcgc atggacgacc gtgcggtgcg
      121 ccgcgccggg ctcgattact ggccgcacgt gcaactctcc agacacacaa acctcgagtc
      181 gctgcgccag tcactgcccg gcgcgcgctt cgtctatctc accaccaagg ccgatcgcgt
      241 ctacacggat tggacgttcc aacccggcga ttgcctcgtc ttcgggccgg agacacgcgg
      301 cttgcccgaa gatcttctgc gccggaactg ggacaactgt ctcaggatcc cgatgttcaa
      361 tcccaacgtg cgcagcttga atctcgccac cgcggtcggt atcgtgctct acgaagcact
      421 gagacaaacg aaccacgggt tgctttaacg ctgctgatgt ccgaaagaaa aaacatacgt
      481 aacatcgcaa tcattgcgca cgtcgatcac ggtaagacca cgctcgtcga tgccatgctc
      541 cgccagtccg gcaccttccg cgaaaacgaa caggtgcgcg aacgcgtgat ggattccatg
      601 gatctcgaac gcgagcgcgg catcaccatc atggccaaga acaccgcggt tcgttaccgc
      661 gacgtgaaga tcaacatcgt cgacacgccg ggtcacgcgg acttcggcgg cgaagtcgag
      721 cgcgtgctga agatggtcga cggcgtgatg ctgctggtcg atgcggctga aggttgtttg
      781 ccgcaaacgc gtttcgtgtt gcgcaaggcg ctcgaagcgc gtctgcccgc gatcgccgtc
      841 gtcaacaaga tcgatcgcgg cgatgcgcga ccggaagaag tggtcaacga gatctacgaa
      901 ctgtttctcg acctcgacgc cactgacgaa cagatcgagt ttccgattct ctacgccgtc
      961 tcgcgcgacg gtactgccaa gcacaagctc gacgatcatt cgaccaacct gcaaccgctg
     1021 ttcgatcaga ttgtcgagac gattccggcg ccacgcgagc tgcgctccga ctcactccag
     1081 ttgctcgtcg cgaatctcga ctacaacgac tacgttggcc ggctcgcgat cggccgcatc
     1141 ttctcgggcg agatcaaagt cggcgatcag atcacggtcg tgaaaccgga tcgcacgtcg
     1201 cacaagacca aagtctcgca gctttacgtg ttcgaaggtt tgaagcgtga gtcagtggac
     1261 aaagcgggct tcggcgagat cgtcgcgctt gccggcatcg aaaacatcaa catcggcgac
     1321 actatcacct cagtcgaaaa tccgcatccg ttgccgtcga tcgcggtgga cgaacccacg
     1381 atcgcgatga tcttcggcgt caacaactcg ccgttcgccg gacgtgatgg gaagtacgtg
     1441 acctcgcgcc aggtcaaaga acgtctcgac aaagagatcc tcggcaacgt cgcgatccga
     1501 gttgaagaga ctgaatcgcc ggaccagttc aaagtctcgg gacgcggcga actgcaactc
     1561 gcgattctga tcgagatgat gcgtcgcgaa ggttacgagc ttcaggtctc aaagcccgaa
     1621 gcgatcacgc gcaacgtcga cggccagctg ctcgaaccga tcgaagcggt ggtggtggac
     1681 tgtcccgacg agttcatcgg cgtcgtaacc gaagcgctgg gccgtcgcaa gggacagatg
     1741 acgaagatga tcaatcacgg caccgggcgc gtgcggctcg agttcgaagc gccgtcgcgc
     1801 ggcttgatcg gttttcgtaa cgagtttctg accgagacaa aaggcacggg cttgctcaac
     1861 acgatgtttt tgcgttgggg tgagtggcag ggaacgatgc gcggccgtgc gacgggatcg
     1921 ctcgtcgcgg atcgcaccgg cgacacgacc acgtacgcgc ttttcaactt gcaggagcgc
     1981 ggcacgctct tcgcgcggcc cggcacgaaa gtttacgaag gcatgatcat cggcgagaac
     2041 gcgcgcgcgg tcgatctcga cgtcaacgcg gtcaaggaaa agaagctgac taacatgcgc
     2101 gcttcgacag ccgacgaagc gatgcgtctc gtgccgccaa aagagctgtc gctggaacaa
     2161 gcgctggaat tcattgcgga cgacgaactg gtcgaggtga cgccgcagac gatcaggttg
     2221 cgcaagcgcg tgttgccggc aaaccagcgc ccgaagaaga aggagtcggc cgagtaagac
     2281 atgcgcagtt tgtttcgcct gccgcaggtt tatcccatca ccgacactaa aatctcaggc
     2341 ctatcacacg cggatcaggt cgcggtgttt gccgaacgcg gtgcgaccgt ggtgcagctt
     2401 cgcgagaagc gtgcgaccgc gttggagttt tacgagtcgg cgaaagcggc gctcgcggtc
     2461 gcggtagaac gcggcgtgca actgatcgtc aacgaccgcg tcgatatcgc attggcaatc
     2521 ggcgccgcgg gcgtccacct cggccaggac gatctgcccc ccgaggtcgc gcggcgtttg
     2581 ctcggcgatg atgccgtgat cggctactcc acccactcag tcgcgcaggc gctcgaagcc
     2641 tccagcttac ccatcgacta cctcgccatc ggacccattt tcgcaacgag cacgaaggaa
     2701 acccccgatc ccgtggttgg tttggagggt ttgcgagcgg tccgcgaggc catcgggagc
     2761 cttccacttg tggcgatcgg cggtctcacc cccgtaaaca ctgctgatgt gctcgcagtc
     2821 ggcgccgatt cagtcgccat gatcagcggc ctctggtctc gctagggggc caacattatt
     2881 ttcttgcgtt tatcatcgtt atgcgcgaga atcgccgacg gttgcgcgcg agctccagga
     2941 aaccgctgca accgcccacc tctcagcggc gacacatcat ttttggctat caactccgga
     3001 gttctgagct aatgagcttc ttcgatctac ctccgataat cgagcggatg ttgctcgttt
     3061 ccgacaagat cagcgacctg aacttctcgg tcggacaggt gccccaagtc gaaatcaacg
     3121 gcaaactcac gcccgtccag ccgctcggga tgcagaagct ctcgccgtat caaaccgaaa
     3181 tcatcgccat gacgctcatg cacggccacc cggacgccgc cgaaaaactg gcgcgcaccg
     3241 gcaccgccga cctgagctac tcgcttccat cgcgcgcgcg ttttcgcgtc aatatcttcc
     3301 agcaacgcgg cgtatactcg atcgtgatgc gcgtgatccc gaccgagatc ccgacgctca
     3361 aatcgctagg cttgccgccg cacctgtcgg aaatcgccga gctgcgcaac ggcctcgtgc
     3421 tggtcactgg tccaaccggc tcgggcaaga gctcgactca ggccgccatc atcgacatcg
     3481 tcaacgagaa gaagcagtac cacatcgtca ccatcgaaga tccgatcgaa tatcttcacc
     3541 tgcacaagca gtcgacgatc aatcaacgcg aagtcggaca cgacacgcgt gactttccgt
     3601 ccgctctgcg cgccacgctg cgccaggcgc ccaaagtcat cctgatcggc gagatgcgag
     3661 acttcgaaac gacggagatc gctttggaag cagccgagac cgggcacctc gtgctttcaa
     3721 cactgcacac gatcgacgcc tcgaagactg tcgatcgcat catcggtctt tatccgaaga
     3781 acgaagaaca ggtcatcaga acgcgtct
//
LOCUS       DASWTX010001318         2748 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_146238, whole genome shotgun sequence.
ACCESSION   DASWTX010001318 DASWTX010000000
VERSION     DASWTX010001318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2748
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146238"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..637)
                     /locus_tag="VGD38_20065"
     CDS             complement(<1..637)
                     /locus_tag="VGD38_20065"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY0730392.1"
                     /translation="MNFYSHETYGERVAGVYDEWYADVNPQLIVALAELAHGGPALEL
                     GIGTGRIALPLAAKGIEVHGIDAAESMISRLKSKPGGDRITITQGNFAEVPVDGKFSL
                     VYIVFNTFFALTSQEEQVQCFRNVAAHLAPGGCFVMEAFVPDLTRFTHGQTNFVRKVT
                     TDQVTLDMSQHHAATQNVVSQQVVITEGNIRLFPVQIRYCWPSELDLMAQLA"
     gene            complement(634..1299)
                     /locus_tag="VGD38_20070"
     CDS             complement(634..1299)
                     /locus_tag="VGD38_20070"
                     /inference="COORDINATES: protein motif:HMM:NF019958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEY0730393.1"
                     /translation="MQASRHDQKLEFILRTAARIFAEKSYHSTSMRDISRETNVSLAG
                     LYHYCRSKEELLFLIQDNCFGRVLERLEKQLEEIEDPVARLSTFIENHLSFFAANMSE
                     MKVLSHEAESLRGDLHAHVSTRKDNYTKLARRILQEVQDASESKQPVDLTVATYALFG
                     MMNWIYNWYDPQGKLKVHDLAQHLTQLFLGGFAPGLLLEPVSSTTLPRANENLSIWRG
                     TTI"
     gene            complement(1305..2702)
                     /gene="boxB"
                     /locus_tag="VGD38_20075"
     CDS             complement(1305..2702)
                     /gene="boxB"
                     /locus_tag="VGD38_20075"
                     /EC_number="1.14.13.208"
                     /inference="COORDINATES: protein motif:HMM:TIGR03225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA];
                     GO_process: GO:0010128 - benzoate catabolic process via
                     CoA ligation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="benzoyl-CoA 2,3-epoxidase subunit BoxB"
                     /protein_id="HEY0730394.1"
                     /translation="MNLYDRIPNNVNLSEDKKLQRALEKWLPNYLDWWREMGPDGFQE
                     KDVWLRTAVDVGSEGWAHFDYVKMPEYRWGIFLEPAKPDAIVGFGDNYGRPAYQEVPG
                     EFRNSLRRIIVTQGDTEPASVEQQRQLGKTCPSLYDMRNLFQVNVEEGRHLWAMVYLL
                     HGYFGRDGRDEADALLERRSGNPDKPRILEAFNQPCDDWLNFFAFTMFTDRDGKYQLS
                     ALAESGFEPLARTCQFMLTEEAHHMFVGDTGLGRVVRRTAQLMKEGDVRELGGIPLDI
                     VQKYINFWFSYSLDLFGGEISSNSADFFAAGLKGRYQEQKQYTEHTAANEVFTMYVVE
                     DGQLKPREVPMRNALNEVLRGEYVKDCEKGLARWNKILNEEGLTERLYLPHPRFHRHV
                     GEYAGHTFDLQGNLITREEFEKRKSEWLPTMEDREYVRSLMHPVTEIGKIANWIAPPA
                     AGIKGKPFEFEYVRL"
BASE COUNT          546 a          791 c          793 g          618 t
ORIGIN      
        1 cggcgagttg ggccattagg tccaactccg acggccagca ataacgaatc tgcaccggaa
       61 agagtcgaat gtttccttcg gtgatcacga cctgttgact gacgacgttc tgagttgcgg
      121 cgtgatgctg actcatatcc aacgtcacct ggtccgtggt gaccttcctg acaaagttcg
      181 tttgcccgtg cgtgaagcga gtcaggtcgg gaacgaaagc ctccatcaca aaacagccgc
      241 ccggcgcgag atgcgcggcg acgttgcgaa aacactgcac ctgctcttcc tgagacgtca
      301 gcgcgaagaa cgtgttgaag acgatgtaga cgagcgagaa cttcccatcg accggaacct
      361 ccgcgaagtt accttgcgtg atcgtaatac gatcgccgcc cggtttcgac ttcagccgcg
      421 agatcatcga ctcagcagcg tcgattccat gaacctcgat acccttcgcc gccagcggca
      481 aagcaatgcg gccggtgccg atgcccaact cgagtgccgg cccaccgtgg gccaactcag
      541 ccagcgcgac gatcaactga ggattgacgt ccgcgtacca ctcgtcataa acgcctgcga
      601 cgcgctcgcc gtaagtttcg tgggagtaga aattcaaatc gttgtgcctc gccaaatgct
      661 caaattttcg ttcgcccgcg gaagtgtcgt cgagctgacc ggctccagca acagtcccgg
      721 tgcaaaaccg ccgaggaaga gttgcgtcag gtgttgggcc aggtcgtgaa ccttgagttt
      781 cccctgcggg tcgtaccagt tataaatcca attcatcatg ccgaacaacg cgtaagtcgc
      841 gacagtgaga tccaccggct gcttgctctc gctcgcgtcc tgcacttcct gaagaatcct
      901 gcgcgccagt ttggtgtagt tgtccttgcg tgtcgagacg tgcgcgtgca gatcgccgcg
      961 cagcgactcg gcttcgtgcg acagcacttt catctcggac atgttcgcgg caaagaacga
     1021 aaggtgattc tcgatgaagg tgctgagcct cgcgaccgga tcttcgattt cttccaactg
     1081 cttttcgagc cgttcgagca cgcggccgaa gcagttgtcc tggatcagaa acagcaactc
     1141 ttctttcgag cggcagtagt gatacaggcc cgcgagactc acgttggtct cgcgcgagat
     1201 gtcgcgcatc gacgtcgagt gataactctt ctcggcgaag atgcgcgcgg ccgtgcgcag
     1261 gataaactcg agcttttgat cgtgacgaga cgcctgcaac tcgattaaag cctcacatat
     1321 tcgaactcga acggtttgcc tttgattccc gcggcgggcg gcgcgatcca gttcgcgatc
     1381 ttgccgatct ccgtcaccgg gtgcatgaga ctgcgcacgt attcgcgatc ttccatcgtc
     1441 ggcagccact cggatttgcg tttctcaaac tcttcgcgcg tgatcaggtt gccttgcaga
     1501 tcgaacgtgt gacctgcgta ctcgccgacg tgacgatgaa agcgcggatg cggcagatag
     1561 agccgctcgg ttaatccttc ttcgttgagg atcttgttcc agcgcgccaa tcccttttcg
     1621 caatctttca catactcgcc gcgcaacact tcgttcaacg cgttgcgcat cggcacttcg
     1681 cgcggtttca gttggccgtc ttcgacgacg tacatcgtga agacttcatt cgccgcggtg
     1741 tgttccgtgt actgcttctg ttcctggtaa cggcctttca aacccgccgc gaagaagtcg
     1801 gcggagttgg aactgatctc gccgccgaag agatcgagcg agtagctgaa ccagaagttg
     1861 atgtacttct gaacgatgtc gagcggaatg ccgccgagct cgcgcacgtc gccttccttc
     1921 atcaactgcg ccgtgcgccg gaccacgcgg ccgagaccgg tgtcgccgac gaacatgtga
     1981 tgcgcttctt ccgtgagcat gaactggcac gtgcgcgcga ggggttcgaa acccgattcg
     2041 gcgagtgctg aaagctgata cttgccgtcg cgatcggtaa acatcgtgaa ggcgaagaag
     2101 ttgagccagt cgtcgcacgg ttgattgaac gcttcgagaa tgcgcggctt gtcgggattg
     2161 ccgctgcggc gttcgagcag cgcatcagct tcgtcgcggc cgtcgcgtcc gaagtaaccg
     2221 tgcagcaggt agaccatggc ccacaggtga cggccttctt cgacgtttac ctggaacaga
     2281 ttgcgcatgt cgtaaagcga agggcatgtc ttgccgagct ggcgttgttg ttcgaccgac
     2341 gcgggctcgg tgtcgccctg cgtaacgatg attcgtcgca gtgaattgcg aaactcgccg
     2401 ggcacttcct ggtaagcagg gcggccgtag ttgtcaccga agccgacgat ggcgtcgggt
     2461 ttggctggtt cgagaaagat gccccaacgg tattcgggca tcttcacgta gtcgaagtgg
     2521 gcccagcctt cggagccgac gtcgaccgca gtgcgcagcc agacgtcttt ttcctggaag
     2581 ccgtcggggc ccatctcgcg ccaccagtcg aggtagtttg gcagccactt ctcgagtgcg
     2641 cgctgaagtt ttttgtcttc ggagagattt acgttatttg gaattcggtc gtaaagattc
     2701 attgcttcta ttggctctaa agattgtctt ctaattcgat caagtccg
//
LOCUS       DASWTX010001319         1799 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_62180, whole genome shotgun sequence.
ACCESSION   DASWTX010001319 DASWTX010000000
VERSION     DASWTX010001319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1799
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62180"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..349)
                     /locus_tag="VGD38_20080"
     CDS             complement(<1..349)
                     /locus_tag="VGD38_20080"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HEY0730395.1"
                     /translation="MSQLTKTRASEILQTLSERKVLVLGDVMLDEFVWGDVSRISPEA
                     PVPVVDVRRESIHLGGAANVLANLVALGAHGWVVGVVGNDYAGGRIRDELRLLNSGGD
                     GGVIVDESRRSTTK"
     gene            complement(337..1476)
                     /locus_tag="VGD38_20085"
     CDS             complement(337..1476)
                     /locus_tag="VGD38_20085"
                     /inference="COORDINATES: protein motif:HMM:NF013257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HEY0730396.1"
                     /translation="MNSLRDIANPSSRPRVVETKTGFVLASEESPEPLAPPRWDWESV
                     KRVLVVRLRSIGDTVLATPSLFALKRFLPEAQVDILVEDWVAPLLTAHPHVDNVIVLE
                     RGGFMTRARVARELRAERYDVVYNLHGGTTATFLTRASGARHRVGFKTYQYANLHTTL
                     APSPLLLWGQQKTHSVEQQLALLGWTGVPVSDKPPTQLGIPPAAVESVNRQLANAGLA
                     DRQIALIHPAAAFETKRWATDNFARIAEFVAELGLAPVAIAAPHEAQLITDLLGEASV
                     QILSLDLSLPEVTALAARSKLFVGNDSGIAHIAAAVGTPSVVIFGSSNVVHWRPWTRA
                     KAEVVFEELPCQPCHGYFCEKFPQPECILRVPVTRVAAAIERCLN"
     gene            complement(1481..1651)
                     /locus_tag="VGD38_20090"
     CDS             complement(1481..1651)
                     /locus_tag="VGD38_20090"
                     /inference="COORDINATES: protein motif:HMM:NF015899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HEY0730397.1"
                     /translation="MAVSQELLEILACPACKAKVELKPAGDALKCVECKRVYPIRDDI
                     PVMLIDEATIEE"
BASE COUNT          385 a          558 c          508 g          348 t
ORIGIN      
        1 tcttcgtggt ggaacgccgc gactcatcga caatcacgcc gccgtcaccg ccggaattca
       61 acaagcgcag ttcatcgcga atccgcccgc cggcataatc gttcccaacc acgccaacaa
      121 cccaaccatg cgcgccgagc gcaaccaaat tcgccaacac gttcgcggcg ccgccgagat
      181 gaatcgattc gcgccgcacg tccacaaccg gcaccggcgc ttcaggcgag atccgcgaca
      241 cgtcgcccca aacaaactcg tcgagcatca cgtcgcccaa cacgagcact tttcgctcgc
      301 taagcgtctg gaggatctcg gaggcacgcg tttttgttag ttgagacatc tctcgatcgc
      361 ggcggcgact cgcgtcaccg gcacacgcag aatacactcg ggctgcggaa acttctcgca
      421 aaaatagccg tgacacggct ggcatggcag ctcttcaaac acgacttccg ctttcgcgcg
      481 ggtccacggc cgccagtgca ccacgttcga cgaaccgaaa atcacgacgg acggcgttcc
      541 gaccgcggct gcgatgtgcg cgataccgct gtcgttgccg acgaacagtt tggaacgtgc
      601 cgctaaagcc gtgacttccg gtagcgaaag gtccagggaa agaatttgta cggatgcttc
      661 gccaagcaaa tctgttatga gctgagcttc gtgaggcgcg gcaatggcca caggtgctaa
      721 accgagctcc gcaacaaact cggcgatgcg tgcgaaatta tctgtggccc aacgcttcgt
      781 ctcaaacgca gccgctggat gaatcagcgc gatctgtcga tcggctaatc ccgcattcgc
      841 gagttgccgg ttaacagact caaccgccgc aggcggaatg cccaactgtg ttggcggctt
      901 gtcgctcacg ggcacgccgg tccagccgag caacgcgagt tgctgttcga cggaatgcgt
      961 tttctgctgt ccccaaagta acaaaggcga cggcgctaag gtcgtgtgaa gatttgcata
     1021 ttgatacgtc ttgaatccca cgcgatgtcg cgcaccgctg gcgcgcgtca ggaacgttgc
     1081 ggttgttccg ccgtgaaggt tgtaaaccac gtcgtaacgc tcggcccgca actcgcgcgc
     1141 gacccgcgcc cgggtcatga atccgccgcg ctcgagcacg atgacgttgt cgacgtgtgg
     1201 atgagccgtg agcagcggcg cgacccagtc ttcgacgagt atgtccacct gcgcctcggg
     1261 caagaaccgc ttcaacgcga acagcgaagg cgttgccaaa accgtgtcgc caatcgagcg
     1321 cagccggacg acgagcacgc gcttcaccga ttcccaatcc caacgaggcg gcgcgagcgg
     1381 ctccggcgac tcttcgctcg ccaggacgaa gcccgtcttt gtctccacca cgcgcggtcg
     1441 cgaagacggg ttggcaatgt cgcgcaggct gttcatcagt tcattcttcg atcgttgctt
     1501 cgtcgatgag catcacggga atgtcgtcgc gaatcggata gacgcgcttg cactcgacgc
     1561 actttaacgc gtcgccggcc ggttttagtt ccacttttgc tttgcaagcc ggacaggcga
     1621 gtatttccaa gagttcctga ctaactgcca ttggcaagac ctttctgtgt cgtgcggaaa
     1681 gtgacaaaag cttaacacaa aggcactcgc ttgctcgatg agcggggcta tgttagtgat
     1741 tggcgccaca gataacacgg attacacgga tgtcattgga atttgcattg cagtacggt
//
LOCUS       DASWTX010001320         1673 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_279822, whole genome shotgun sequence.
ACCESSION   DASWTX010001320 DASWTX010000000
VERSION     DASWTX010001320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1673)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1673
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279822"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1673
                     /locus_tag="VGD38_20095"
     CDS             <1..>1673
                     /locus_tag="VGD38_20095"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY0730398.1"
                     /translation="TDFERPPGVSLSRSSLNVEFPADLCADVSKLTNASPLLTFTTLL
                     AALNICLHRYTESRAIVVGCPPRLKDDVTSHEPNALAILVEIDGRETFRQLLLKVRET
                     LVEAISWQSYPFDRLVKDLGLDLSDHRCPLFDITLALKNIHGELPDVNQDIAMTFELT
                     AEGSISGVVDYKDELFQRESIERFTQHWMNVLRAALKDLNAPIDRLELTSETERRQIL
                     NEWNKTAAAYAADKCFHQLFEAQAAQTETAIAVSFQDTQVTYAELNRRANQLAHYLRA
                     HGVGPEVLVGISLPRSAELIVALLGVFKAGGAYLPLDLSYPKERIAYMMNDARVPVLL
                     TLQKLLPELPDTDAQITCLDADAESIAAQSIANPVNISTPENAAYVIYTSGSTGRPKG
                     VVVRHGGLCNLTEAQRRTFAVEPEDRVLQFSSLNFDASIFEIVMALRSGATLHLSAAE
                     SLMPGADLLRFLRTHAISNVTLPPSALMVTAVEDLPSLKTIIVAGEACPAELVARWAK
                     GRRFFNAYGPTETTVWATVKQCVDGENNPPIGRPITNHRAYVLNKQLQP"
BASE COUNT          354 a          512 c          461 g          346 t
ORIGIN      
        1 ggactgattt cgagagacca ccgggcgtct ctctgtcgcg cagttcgctg aacgtcgaat
       61 tcccggccga cctctgcgcg gacgtctcga agctgacaaa cgcttcgccc ttacttactt
      121 tcacaacgct cctcgctgct ctaaacattt gtctccatcg atacaccgaa agccgcgcca
      181 tcgtcgtcgg atgtccgcca cgcttgaaag atgacgtcac ttcgcacgag ccgaacgcgc
      241 tcgccattct cgtcgagatt gacggccgcg aaacgtttcg ccagttgctc ttgaaagtgc
      301 gcgagacatt ggttgaggcg atctcgtggc agagctatcc cttcgatcgt ttggttaagg
      361 acctcgggct cgacctttcc gaccacaggt gtcccctctt cgatatcaca ctcgcgctga
      421 aaaacattca cggcgaactg cccgacgtca atcaagacat cgcgatgacg tttgaactga
      481 ccgccgaagg aagcattagc ggagtggtcg attacaagga cgaactgttt cagcgcgaaa
      541 gcatcgaacg cttcacgcaa cattggatga acgtgttgcg tgcggcgctc aaagatctca
      601 acgcgccaat cgatcgcctt gagctaacga gcgagacgga gcgccggcag atcttaaacg
      661 agtggaacaa gacggctgcc gcttacgccg cggacaaatg ctttcatcag ctcttcgaag
      721 cgcaggcagc gcaaaccgag accgctatcg ccgtcagttt tcaggatacg caagtgactt
      781 acgcggaact gaaccgccgc gcgaatcaac tcgcacacta cctgcgcgcg cacggtgtcg
      841 ggccggaagt gttggtgggc atttcgctgc cacgctcggc cgagttgatc gttgcgctgt
      901 tgggcgtgtt caaagccggc ggagcttatc ttccgctgga cctgagctac ccgaaagagc
      961 gcatcgccta catgatgaac gatgcgcgcg ttcccgtgct gctgactctg caaaaacttc
     1021 tgcccgagct accggacaca gacgcgcaga tcacctgtct cgacgccgac gcggagtcca
     1081 tcgccgcgca gagcatcgcg aacccggtca acatttccac gcccgagaat gcggcgtacg
     1141 tgatctacac ctcgggctcg acaggccgcc ccaagggcgt cgtcgtgcga cacggtggct
     1201 tgtgcaatct cactgaggca cagcggcgaa cttttgcagt tgagccggaa gatcgtgttc
     1261 tgcaattttc ttcgttgaac ttcgacgcct cgattttcga gatcgtgatg gcgttgcgga
     1321 gtggcgcgac gcttcatttg tcagcagccg aatccctgat gccgggcgcc gaccttctcc
     1381 gttttctgcg cacgcacgcg atcagcaacg tcactctgcc gccttcagcg ttgatggtca
     1441 cagcggtcga agatcttccc tcgctgaaga cgatcatcgt ggccggagaa gcctgtcctg
     1501 ccgaactggt cgcacgttgg gcgaagggcc gccggttctt caatgcgtat ggtccaaccg
     1561 agacaacggt atgggcgacc gtgaagcaat gcgttgacgg tgaaaacaat cctcctatcg
     1621 gtcgccccat tacgaatcac agagcctacg tgctcaacaa gcaattgcag ccc
//
LOCUS       DASWTX010001321         8993 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_237890, whole genome shotgun sequence.
ACCESSION   DASWTX010001321 DASWTX010000000
VERSION     DASWTX010001321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8993)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8993)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8993
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237890"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            103..1329
                     /locus_tag="VGD38_20100"
     CDS             103..1329
                     /locus_tag="VGD38_20100"
                     /inference="COORDINATES: protein motif:HMM:NF018004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1015 family protein"
                     /protein_id="HEY0730399.1"
                     /translation="MAVIRPFRALRPPAERAHAVASVPYDVVNTEEARALAEGNPLSF
                     LHVSRPEIDLPAGTDIYSDAVYRKAVDNFEQLTATCPLEREAEPSLYLYRLVMGQHEQ
                     IGVVAVCSVDEYDNDTIRKHERTRRDKEDDRTRHILMLRAQTGPVFLTYRTRPEIDEH
                     VRAAISGEPLFDITADDGVRHTIWRLTDTQALVNSFTNVPLLYIADGHHRAASASRAR
                     AELRQQSFTHSGNEDYNYFLTVIFPDSQVQILAYNRVVRDLNGLSKEAFLEAIKQQFT
                     IADNATPEPPQRGHWSMYLDGHWYGLTLSPAATLPASTVSSLDVSVLQDRLLDPVLGI
                     KDVRTDKRIDFVGGLRGTKELERLVDEGKAAVAFSMYPTTVSELLMVSDANEIMPPKS
                     TWFEPKLRDGLLIHTI"
     gene            1334..2545
                     /locus_tag="VGD38_20105"
     CDS             1334..2545
                     /locus_tag="VGD38_20105"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoglycerate dehydrogenase family protein"
                     /protein_id="HEY0730400.1"
                     /translation="MKVLVADKFEQSGRDGLEALGCEVSFQPDLKDEALVNAIAELAP
                     DVLVVRGTKVTEPMLAAGPIKLVVRAGAGYNTIDVAAASKRGIYVSNCPGKNSIAVAE
                     LAFALILALDRRIVDNVVTLRRGEWNKKEFSKARGLYGRTLGLIGVGKIGQEMISRAR
                     AFGMPVIAWSRSLTPMRAAELGVTHKESPKDVAAEADVVSLHLALNNETRNLIDAEFF
                     NAMRQGAYFINTARGEVVDQQALVNAMKSRGIRAGLDVYATEPTSAVAEFTDQIVKEE
                     GLYGTHHIGASTDQAQEAIAAETVRIVQQFKETGQVPNVVNLARQTPATHRLVVRHVD
                     RPGVLAGVLDAIKSEQINVQEMENIVFEGAAAAVARINLDNAPSDTILNQIRSSSSDI
                     IELNLIQLGSQ"
     gene            2542..3315
                     /locus_tag="VGD38_20110"
     CDS             2542..3315
                     /locus_tag="VGD38_20110"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY0730401.1"
                     /translation="MNTTLITGASSGIGAAFARKLAKRGRNVLLVARSEDKLIALCNE
                     IGRVSGIRAQYIAIDLTEPDAALRLFEETRKRGLTIDMLINNAGYGSMGEFADQERER
                     ELDMIDLNVKSLVDLTYRFLAPMRERRQGTIINVASTAAFQAVPFMATYAATKAFVLS
                     FSEALWEENRVHGIHVLALCPGVTDTNFFAASKIDRPPMRTVQTAEEVVDAALRGLAR
                     RKSVVISGWTNWLTVEIQRFVPRAFVTKFVGKTFRSRFE"
     gene            3398..4483
                     /gene="serC"
                     /locus_tag="VGD38_20115"
     CDS             3398..4483
                     /gene="serC"
                     /locus_tag="VGD38_20115"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HEY0730402.1"
                     /translation="MTERIFNFSAGPAVLPVPVLEEAQRDMLSLPGVGMSVMEISHRS
                     KTFDEIHARAESGVRELLSIPDNYRILFLQGGASLQFSMVPMNFLPADGTADYVITGS
                     WGKKALKEAKRVGAVNVAATMADGGFTRVPGQDELSLSSGAAYVHLTSNETIEGVQWK
                     QEPETGDVPLVADASSDILSRAIPVEKYGLIYAGAQKNIGPSGVTLVIIRDDLLPRIP
                     DGLHTMLDYRTHVENNSLYNTPNTWGIYIISLVCKWITDKGGISGMERENDEKAQLLY
                     DAIDATEFYRGHADEDCRSTMNVTFRLPSEELEKKFTSEATAQGLDGLKGHRSVGGIR
                     ASIYNAFPRAGVEALVSFMKDFERRNG"
     gene            4541..5440
                     /locus_tag="VGD38_20120"
                     /pseudo
     CDS             4541..5440
                     /locus_tag="VGD38_20120"
                     /inference="COORDINATES: protein motif:HMM:TIGR00005.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
     gene            complement(5437..8025)
                     /locus_tag="VGD38_20125"
     CDS             complement(5437..8025)
                     /locus_tag="VGD38_20125"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY0730403.1"
                     /translation="MPDGSNSSDSASPDQLPAFIAHYRILRRLGKGGMGEVFLAEDTK
                     QHGRKVALKVLPDELTRSESRLRRFKQEARAVLALNHPNILTVFEIGESSNHYYIATE
                     FIEGETLRQCLWREPLRVDEALGVAIQVAMALEAAHNAGIVHRDIKPENIMLRQDRFV
                     RDRFVKVLDFGLAKLTDRESSSADPEAVTIPVSETSPGLVMGTSGYMSPEQAEGESID
                     ARSDIFSLGVVLYEMIAGQPPFKGRTDSHTRVSIIDDDPAPLTEHVADVPRQLERIVS
                     KALAKDRQKRYQTVTDLKLDLEQLRDELHVESSTGAGARREFAPLAQTRTIHSGPTRT
                     RSQMETITDEPVPVPTDSTHAPPRRGQRHALWMVYSTLAIVLCGVIVAAIVYFVRQPT
                     AINSVAVLPFVNDSKDPNVEYLSDGITESIINNLSQLPELRVMSRNAAFRFKGSNLDP
                     VEAGRNLNVGAVLTGRLVKLNDRFVIKAELIKVADGSQLWGDEYNSSLADIFAVQDEV
                     SKKIYQSLRLRLSGADEQKLARRYTHDAEAYQLYLKGRYFWNKRNEEGFRNGIEYFKR
                     AEEKDPTFALAFSGLADSYALLCDIGVVRPKDEMPKAKAASEKAVDADPTLAEAYTSR
                     AFVKLAYDWDWLGAQSDFQQALKLNPKYPTAHQWYASYLMQMGKFAAAKTEIEEAHKL
                     DPLSPIISSNTGLYSYYEHNYDDAIAKYKLTLQSDPDFWVARHYLALAYVQKGMHDDA
                     IKELRALIKAPASGPVPDEVIASETEASASLGFAYGMAGKRAEAADIIKKIERLAQRR
                     YVSGLYSAIVYAGLKDNDRAIEFLNKAYEDRHPGLVLIRIEPMFDALRSDERFKQLVK
                     RFEPIP"
     gene            8204..>8993
                     /locus_tag="VGD38_20130"
     CDS             8204..>8993
                     /locus_tag="VGD38_20130"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0730404.1"
                     /translation="MSSALTRILFKSLAAACIIVAVALSVPAQQPKASPTPPPGTDPQ
                     GTEKIFVRRVRLPITVTDKKGQFVGGLTKEDFVILEDKVPQAIETFSDDLSLTTPLYI
                     AVLMDTSPSTAGKLKFQQESAMNFIQTVVKPRKDRVLFGTFDDEITLLQDFTDRLDLL
                     DKAVYSVKKMGKQTALFDAIWQFCDEKMRSVPGRRVLLVVSDGEDTYSRANIRDAIDI
                     AQRTETTIFAISTKAGFLSTVPGVEAGQVADKKDRDLQTLAEETG"
BASE COUNT         1948 a         2652 c         2577 g         1816 t
ORIGIN      
        1 gcgacgatga tacctcacgt tcgtttgagt tttcacactc aaaccgctag tcttgaacca
       61 cataagcctt tacataatca cttggtagtt gatggaggat ctgtggcggt cattcgtccc
      121 tttcgcgctt tgcgcccgcc ggccgagcgc gctcacgcag tagccagcgt cccttacgac
      181 gtcgtcaata cagaagaagc acgcgccctc gcggagggca atccgctcag ttttctgcac
      241 gtctcgcgcc ccgagatcga cttgcccgcc ggaaccgaca tctacagcga cgccgtctat
      301 cgcaaggccg tcgacaactt cgagcagttg accgcgacct gtccactgga acgagaagcc
      361 gaaccgagtc tctatctcta ccggctcgtg atgggccaac acgagcagat cggcgtggtc
      421 gccgtctgct ccgtcgacga gtacgacaac gacactattc gcaaacacga acgcacgcgc
      481 cgcgacaaag aagacgatcg cacgcgccac atactcatgc tgcgcgcgca aacaggtccc
      541 gtctttctca cgtatcgcac gcgccccgaa atcgatgaac acgttagagc cgcaatcagc
      601 ggcgagccct tgttcgacat aacagccgac gacggtgttc gtcacacgat ctggcgtctc
      661 acggacacac aagcactcgt caacagtttc accaacgttc cgctgcttta catcgccgat
      721 ggccaccatc gcgccgcgag cgcgagccga gcgcgagccg agttgcgcca acagagcttc
      781 acgcacagcg gcaacgaaga ctacaactat tttctaaccg tcatctttcc cgattcgcag
      841 gtgcagatac tcgcgtacaa ccgcgtcgtg cgcgacctga acggcctctc gaaagaagca
      901 tttctcgaag ccatcaagca gcagttcacg atcgccgaca acgcgacccc cgagccgccc
      961 caacgcggcc actggagcat gtatctcgac ggccactggt acggcctgac actctcgccc
     1021 gcggcgactt tgccggccag caccgtttcg tcgctcgacg tcagcgtgct tcaggatcgt
     1081 ttgctcgatc ccgtgctcgg catcaaggac gttcgcaccg acaagcgcat cgatttcgtc
     1141 ggcgggctgc gcggaacgaa agagctcgag cgtttggtcg acgaaggcaa agcagccgtc
     1201 gcgttttcaa tgtatccgac aaccgtttcg gagctcttga tggtttccga cgcaaacgag
     1261 atcatgccgc cgaagtcgac gtggtttgaa ccaaaactca gagacggatt actgatccac
     1321 acgatctaaa gcaatgaaag ttctagttgc cgataaattc gaacagtcag gccgcgacgg
     1381 cctggaagcg ctcggttgcg aagtttcgtt tcaaccggac ttgaaagacg aagcactcgt
     1441 gaacgcgatc gccgagctgg cgccggacgt gctcgtggtc aggggcacga aagtcaccga
     1501 gccgatgctc gccgctggtc caatcaaact cgtcgtgcgc gccggcgcgg gttacaacac
     1561 gatcgacgtc gccgcggctt cgaaacgcgg catttacgtg tcgaactgtc ccggcaaaaa
     1621 ctcgatcgcc gtcgccgagc tcgcttttgc gttgatcctt gcgctcgatc gacgcatcgt
     1681 cgacaacgtc gtgacgctgc gccgcggcga gtggaacaag aaagagtttt cgaaagcgcg
     1741 cggcttgtac ggccggacgc tgggtctgat cggcgtcggc aagatcgggc aggagatgat
     1801 ctcgcgcgca cgcgcgtttg gtatgcccgt gattgcgtgg agccggagcc tgacgccgat
     1861 gcgtgcggcg gagcttggcg tcacgcacaa ggagtcgccg aaagacgtcg ccgcggaagc
     1921 cgacgtcgtg agtcttcatc tcgcgctcaa caacgagaca cgcaatttga tcgacgcgga
     1981 gttcttcaat gcgatgcgcc agggcgctta cttcatcaac accgcgcgcg gcgaagttgt
     2041 cgatcagcaa gcgctggtca acgcgatgaa gtcacgcggc attcgcgccg gtctcgacgt
     2101 ttacgccacg gagccaacga gcgcagtcgc cgagttcact gatcagatcg ttaaagaaga
     2161 aggactttac ggcacgcatc acatcggcgc ttcgacggac caggcacagg aagcaatcgc
     2221 ggcggaaacg gtgcgcatcg tgcagcagtt caaagaaacc ggccaggtgc caaacgtcgt
     2281 caacctcgca cggcaaactc cggctacgca ccggctcgtg gtccgtcacg tcgatcgtcc
     2341 gggcgtgctc gcgggcgtgc tcgacgcgat caagtcagaa cagatcaacg ttcaggagat
     2401 ggaaaacatc gtgttcgaag gcgcggcggc agccgtggcg cgcatcaatc tcgacaacgc
     2461 gccgtcggat acgattctga atcaaatacg ctcgagcagc agcgacatca tcgagctgaa
     2521 tttgattcaa ttgggtagtc aatgaacaca actctcatca ccggcgcctc ctcaggaatc
     2581 ggtgcagctt ttgccagaaa actcgcgaag cgcggcagaa acgttctgct ggtcgcgcgt
     2641 tctgaagaca agctgatagc gttgtgtaac gagattggcc gcgtgagcgg cattcgcgcg
     2701 cagtacatcg caatcgattt gactgagcca gatgcggcac ttcggctgtt tgaagaaaca
     2761 cgaaagcgcg gcctgacgat cgacatgctc atcaacaacg cgggctacgg ctcgatgggc
     2821 gagtttgccg atcaagagcg tgagcgcgag ctcgacatga tcgatctgaa cgttaagtcg
     2881 ctcgtggatt tgacgtaccg gtttcttgct ccaatgcgcg agcgccggca gggaacgatc
     2941 atcaacgtcg cttcaactgc ggcttttcag gcggtgccgt tcatggccac gtacgcggcg
     3001 acgaaagcgt ttgtgttgtc gttttccgag gcgctttggg aggagaatcg tgtacacggc
     3061 attcacgtgc ttgcgttgtg tccgggcgtg acggatacga acttcttcgc ggcgtcgaag
     3121 atcgatcgcc cgccgatgcg cacagtgcag accgcggaag aagtggtcga cgcggcgttg
     3181 cgtggtttgg caagacgcaa gagcgtcgtg atctctggtt ggaccaactg gctcaccgtc
     3241 gagatccagc gcttcgtgcc acgggcgttc gtgacgaagt tcgtgggaaa aacttttcga
     3301 tcgcgatttg agtgagcgtt ttgagttcaa cctttaggtt gtcttacgcg cgcaagctaa
     3361 agcttgaact cagaacgaca aacggaaggg gtaggaaatg acggaacgca tttttaattt
     3421 cagcgccggg ccggcggtgt tgccggtgcc ggttttggaa gaagcgcagc gcgacatgtt
     3481 gagcctgccc ggtgtgggca tgtcggtgat ggagatcagc catcgttcga aaacgttcga
     3541 cgagatccac gcgcgcgctg aatcgggtgt gcgcgaactg ctgagcattc cggacaacta
     3601 ccggatcctg tttctgcaag gcggcgcgag tttgcagttc tcgatggtgc cgatgaactt
     3661 cctgcccgcg gacggcaccg ccgattacgt catcaccgga agctggggca agaaagcgtt
     3721 gaaggaagcg aagcgggtcg gcgctgtgaa tgtcgcggcc acgatggccg acggcggctt
     3781 cacacgcgtg ccgggccagg acgagttgag tctcagttca ggcgcggctt acgttcacct
     3841 caccagcaac gaaacgatcg aaggtgtgca gtggaaacaa gaacccgaaa ccggcgacgt
     3901 tccattagtc gctgacgcct cgtccgacat tttgtcgcgc gcgattccgg tcgagaagta
     3961 cggcctgatt tacgcgggcg cgcagaagaa catcggcccg agcggcgtca cgctcgtgat
     4021 cattcgcgac gacctgttgc cacgcattcc cgacggcctg cacacgatgc tcgactaccg
     4081 cacgcacgtc gaaaacaatt cgctttacaa cacaccaaac acgtggggca tttacatcat
     4141 cagcctggtt tgcaaatgga ttacagacaa gggcggcatc agcggcatgg agcgcgagaa
     4201 cgacgagaag gcgcaactgc tctacgacgc gatcgacgcc accgagttct atcgcggcca
     4261 cgccgatgag gattgccgtt cgacgatgaa cgtcacgttc cggctgccgt cagaagagct
     4321 ggaaaagaag ttcacgtctg aagcgacggc acaggggctt gatggtttga agggtcatcg
     4381 ttcggtgggc ggcatcaggg cgtcgatcta caacgcgttt ccgcgcgcgg gtgtggaagc
     4441 gcttgtgtcg tttatgaaag atttcgaacg tcgaaacggg tgatggacca cggaccagga
     4501 aacgctcaca tttcaggttg cgccggaaga agttggggtt cgactcgatt cttacttagc
     4561 cacacggatt gagggctgga gtcgcgcgcg gctccagcgt ctcatcgaag cggaagacgt
     4621 tctcgtaaac ggcaagtcag ccaaaccctc gtacaaacta cgcgaaaacg acgaactgga
     4681 agtcgagctg atcgcgccgg cttcaaccag ttttgctccc gaagacattc cccttgaaat
     4741 catctacgaa gacgacaccc tcgtcgtcgt gaacaagccg gcaggactgg tcgtccatcc
     4801 cgctgctgga attcacggcg gcacgctagc gaacgcactc gcattccact ttcaacaact
     4861 tccggatagc gttacgggcg actttaccgt acggcccggc atcgtgcatc gtctcgaccg
     4921 cgacacgtcg ggacttctgg ttgtcgccaa aaccgagaca gccctcgaac acctttccga
     4981 tcagtttcgc gatcgcacgg tgttcaaatc gtacgtcgcg ctggtccatg ggcgagtgaa
     5041 cgtcgagtca ggaaagatcg atcaaccgct cgcacgcgat ccgtcaaacc gcacgcgcat
     5101 ggcggtcgtg cgtggcgggc gtagcgcgtt gtcgttgttt cgcgtgcggc aaggatttga
     5161 tcgcttcacg ttgctcgacg ttgagctgaa gaccggccgc acgcaccaga ttcgcgttca
     5221 tctcgcgtgg ctgaaacatc cggttgtcgg cgacgaaacc tacggcggcg gacgcgacaa
     5281 cacgatccag gacgcccgcc tgcgcgcgca cgtgcgcaat ctcgggcgac attttcttca
     5341 cgcagaaaag ctcgctttca ctcatccgca aagcggcgag cgcgtggagt tcaatagtcc
     5401 tttgccgccc gaactcacag cactgttagc agagatttag gggattggtt cgaaccgctt
     5461 aaccagctgc ttgaatcgtt catcggatcg cagcgcgtca aacatcggct cgatgcgaat
     5521 gagaaccaga ccggggtggc ggtcttcgta ggctttgttg aggaattcga tcgcgcgatc
     5581 attgtctttc aaacccgcgt aaacgatcgc ggagtaaagc ccggaaacgt atcggcgctg
     5641 cgccaatcgt tcgatcttct tgatgatgtc tgccgcttca gcacgctttc cggccatgcc
     5701 ataagcaaaa cccagcgacg cagacgcttc cgtttcgctc gcaatcactt cgtccggcac
     5761 tggcccactc gccggcgctt taatcaacgc ccgcaactcc ttgatcgcat cgtcgtgcat
     5821 tcccttctgc acgtacgcca gcgccaggta gtgccgcgcg acccaaaaat caggatcgct
     5881 ctgcaacgtc aacttgtact tcgcgatcgc gtcgtcgtag ttgtgctcgt agtaggaata
     5941 caaaccggtg ttggaactga taatgggcga gagcggatcg agcttgtgcg cttcctcgat
     6001 ctcagtcttc gccgcggcga acttgcccat ctgcatcagg tacgatgcgt accactgatg
     6061 cgcggtcgga tacttcggat tcaacttgag cgcctgttga aaatcactct gcgcgccaag
     6121 ccaatcccag tcatacgcaa gcttcacgaa cgcgcgcgaa gtgtaagctt cagccagcgt
     6181 cggatcggca tcgaccgctt tctccgacgc cgcttttgct ttcggcattt catcttttgg
     6241 ccgcactaca ccgatgtcgc acagcagcgc gtaagaatcg gcgagcccgg aaaacgcgag
     6301 cgcgaacgtc ggatccttct cttcggcgcg tttgaaatac tcgatgccgt tgcgaaaacc
     6361 ttcttcgttg cgcttgttcc agaagtaacg tccttttaaa taaagctgat acgcctcggc
     6421 gtcgtgtgtg taacgcctgg cgagtttctg ttcgtccgcg ccactcaaac gcagccgcaa
     6481 actctgatag atcttcttcg aaacttcatc ctggaccgcg aagatgtcgg cgagactgct
     6541 gttgtactca tcgccccaaa gctgcgagcc gtccgcaacc ttgatcaatt cagctttgat
     6601 aacgaaacga tcgttgagct tgaccaggcg gccggtgaga accgcgccga cgttgagatt
     6661 acgtccggct tcgaccggat cgagattcga tcccttgaac ctgaacgccg cgttgcgcga
     6721 catcactcgg agctcgggca attgcgaaag attgttgatg atgctttcag taatgccgtc
     6781 tgaaaggtat tcgacgttcg gatctttgct gtcgttaaca aacggcaaaa cagcgactga
     6841 gttgatcgcc gtgggctgcc gcacgaagta aacaattgcc gcgacgatca cgccacaaag
     6901 cacgatggcc agcgtggagt aaaccatcca gagcgcgtgt ctttgtccgc ggcgaggagg
     6961 agcgtgcgtg gagtcagtcg gaacaggaac cggctcgtct gtgatcgttt ccatctgcga
     7021 tcgcgttcgt gtcggtccgg aatgaatcgt ccgcgtttgc gcgaggggcg caaactcacg
     7081 ccgcgcaccc gcgccggtcg aagattcaac gtgcagctcg tctcggagtt gttcgagatc
     7141 gagttttaga tccgtgacgg tttgatagcg cttctgacga tccttcgcca aagccttcga
     7201 gacgatgcgt tcgagctggc gcggcacatc cgccacgtgc tccgtcaaag gcgcgggatc
     7261 gtcatcgatg atcgaaactc tcgtgtgact atcggtgcgt cccttaaacg gcggctggcc
     7321 cgcgatcatt tcatacaaaa ctacgccaag actgaagatg tctgagcgcg cgtcgatact
     7381 ctcgccttcc gcctgttccg gcgacatgta gccgctcgtg cccatcacca gcccgggact
     7441 cgtttccgaa accggaatag tcacggcttc cggatcggct gacgaactct cgcgatcggt
     7501 cagctttgcc aaaccaaaat ccagcacctt cacgaaccga tcgcgaacga aacgatcctg
     7561 ccgcaacatg atgttctcgg gcttgatgtc gcgatgcacg atgccggcgt tgtgcgccgc
     7621 ctcgagcgcc attgcgactt gaatcgcaac gccgagcgct tcgtcgactc gcagcggctc
     7681 gcgccagaga cactgccgca acgtttcacc ttcaatgaat tcagtcgcga tgtagtagtg
     7741 attcgaagac tcgccgatct caaacaccgt gaggatgttc gggtgattca acgccagcac
     7801 ggcgcgcgct tcctgtttga aacgccgcaa acgactctcg gaccgcgtga gttcatccgg
     7861 caggaccttc agcgcgacct tgcggccgtg ttgcttcgtg tcctcggcga ggaacacctc
     7921 gcccatgcct cccttgccca gtctgcgcaa gatgcgataa tgggcgatga acgcagggag
     7981 ttgatccggg ctggcagagt ccgaactatt tgagccgtcg ggcatcgaag gtggaattcc
     8041 ttgcgcgact aagttgggcc gaaattcgcg gaaatcattg taacacccgt tcggagttgc
     8101 aatagcatcg actgccaaag ggcaacagct tccggcctga acgcatcgaa accgcgtcgt
     8161 ccaggcagac tccggacagc gtctgaacta taatccgaat cgcatgtcat cagccttaac
     8221 acgaattctg ttcaaatctt tggcggcagc ttgcattatt gtggccgtcg cgttgtccgt
     8281 ccctgcgcag cagcccaaag cttcgccgac accgccgccg ggtacggatc cacaaggcac
     8341 cgagaagatt ttcgtccgcc gcgtgcgtct gccgatcacg gtgaccgaca agaagggaca
     8401 gtttgttggc gggctaacca aagaagactt cgtcattctt gaagacaaag tgccgcaggc
     8461 gatcgagacg ttttcagacg atctctcgct gacgactccg ctctacatcg cggtgctgat
     8521 ggacacgtcg ccgtcaacgg ccggcaagct gaagttccag caggagtcgg cgatgaactt
     8581 cattcaaacg gtcgtgaagc cgcgcaagga tcgcgtgctc ttcggcacgt tcgacgatga
     8641 aatcacgctg ctccaggatt ttactgaccg gctcgacctg ctcgacaagg ccgtctacag
     8701 cgtgaagaag atgggcaaac agaccgcgct cttcgacgcc atctggcagt tctgcgacga
     8761 gaagatgcgc tcggttccgg gccggcgcgt gttgctggtt gtcagcgacg gtgaagacac
     8821 ctacagccgc gcgaacattc gcgacgcgat cgacatcgcc caacgtaccg agacgacaat
     8881 ctttgcgatc tctaccaaag ccggcttctt gtcgactgtt ccgggcgtcg aagccgggca
     8941 ggtcgctgat aagaaagatc gcgatttaca aacactcgca gaagagaccg gcg
//
LOCUS       DASWTX010001322         2263 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_279836, whole genome shotgun sequence.
ACCESSION   DASWTX010001322 DASWTX010000000
VERSION     DASWTX010001322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279836"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..349
                     /locus_tag="VGD38_20135"
     CDS             <1..349
                     /locus_tag="VGD38_20135"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY0730405.1"
                     /translation="MADEYILTDPLGQLRTKTETLAAIETNEVDFQSTQSDDVNVTIY
                     GDTAVVTGRSTFRGRYKGWSMTGSYQYTDVLVKRNGSWKAVSSHITALGAGPLRLRLG
                     RFVCDWLRNGLNF"
     gene            618..944
                     /locus_tag="VGD38_20140"
     CDS             618..944
                     /locus_tag="VGD38_20140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730406.1"
                     /translation="MLLLDPNGKERFRLEGYLPRDEFRVQLELGLARIAFTSKNWAEA
                     ERRFAEVLDRYQNSHAAPEALYWKGVSRYKATNDHTVLGELPEQFRQRYPNSIWALKT
                     AAWEHG"
     gene            937..1716
                     /gene="ygiD"
                     /locus_tag="VGD38_20145"
     CDS             937..1716
                     /gene="ygiD"
                     /locus_tag="VGD38_20145"
                     /EC_number="1.13.11.29"
                     /inference="COORDINATES: protein motif:HMM:NF007914.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,5-DOPA dioxygenase extradiol"
                     /protein_id="HEY0730407.1"
                     /translation="MVKPMPALFFGHGNPMNALQHNDWTEAWNAIGASLPRPRAILCV
                     SAHWYLPATLVTAMTAPRTIHDFGGFPRELYQVQYPAPGSPELARRVQELLKPLAVEL
                     DHSWGLDHGTWSVLHHVYPAADIPVVQLSIDESQPAAFHFELGERLGPLRDEGVMIVG
                     SGNLVHNLHTYAWGRHIPEPFEWALRFELVAKQLLQDGEFEPLVNFESLGPDALLAIP
                     TPDHYLPLLYVLGARRQDDAITFPVQGFDGGSISMLAVQLG"
     gene            complement(1717..>2263)
                     /locus_tag="VGD38_20150"
     CDS             complement(1717..>2263)
                     /locus_tag="VGD38_20150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730408.1"
                     /translation="EGNRIKFASLDGSQNQSELLVDGMIDATGISPNKRWLAVVDETQ
                     KLTVFDLQTGTNKTIAIQTSDVGPLVVTDDGLNVYTIENEGALTHWDISTGKATASVL
                     SEIRERHSRVDFMTLANDDRWLVTAGNHRDVGIFDRTTGKLVFYMQTGGAASWVEKVW
                     IKDKRLILTTDIGVMYDGVLQ"
BASE COUNT          465 a          663 c          638 g          497 t
ORIGIN      
        1 gatggctgac gaatacatcc tcaccgatcc tctcggacaa ctgcgcacca aaacagaaac
       61 tctggccgcg atcgaaacca acgaagtcga tttccagagc acgcaaagtg acgacgtaaa
      121 cgtcaccatc tacggcgaca ctgcggtagt caccgggcgt tctaccttcc gcggacgtta
      181 taaaggttgg tcaatgacgg gcagttatca atatactgac gttctcgtaa aacgaaacgg
      241 ttcgtggaaa gcagtcagtt cgcacatcac cgcgctcggc gccggcccac tgcggttgcg
      301 actcgggcgc ttcgtctgcg actggctgcg aaatggatta aacttctagc caacttcaac
      361 tagggagaaa gtctatgaat gtgaactgga tgaaagacgc cgacgctgcg ctcgaagaag
      421 cgaaggccaa taagcgtccg atattgatcg acttcagcgc cgctcccggc tgaggcgcat
      481 gcgttcggct ggaagccgaa tcatacgccg acgaaaaaac cgccgccttc atcaacgaga
      541 acttcgttcc tctcgcagca cacatcaaag agcatcctgc ttacttccat cgtttcgacg
      601 ccctctggac gccgagtgtg ctcctgctcg atccgaacgg caaagaacgt tttcgtctcg
      661 aaggttatct gccgcgcgat gaatttcgtg tgcagttgga gctcgggctc gcacgcatcg
      721 ctttcacgag caagaactgg gctgaagcgg aacgccgttt cgccgaggtt ctcgatcgtt
      781 atcaaaacag ccacgccgcg cccgaggcgc tttattggaa aggcgtgagc cgctacaaag
      841 cgaccaacga tcacactgtt ctcggcgaac tccccgaaca gtttcggcag agatacccga
      901 acagcatctg ggcgttgaaa actgccgcgt gggaacatgg ttaaaccaat gcctgcgctc
      961 ttcttcgggc acggcaaccc gatgaacgcg ctgcaacata acgattggac cgaagcctgg
     1021 aacgccatcg gcgcatcgct gccacgtcca cgcgccatac tctgcgtatc ggcgcactgg
     1081 tacttgccgg ccacgctcgt gacagcgatg acggcgccgc gaacgattca cgacttcggc
     1141 ggctttccgc gtgagttgta tcaggttcaa tatcccgcgc ctggctcacc cgaactcgcg
     1201 cgccgcgtgc aggaactact aaagccgctg gcggtcgagt tggaccactc gtggggactc
     1261 gatcacggaa cgtggtcggt gcttcatcac gtctacccgg ctgctgacat tcccgtggtt
     1321 cagttgagta tcgacgaatc gcagcccgcc gcttttcact tcgaactcgg cgagcgtttg
     1381 ggtcctctgc gtgacgaagg cgttatgatc gtgggcagcg gcaacctggt ccataacctg
     1441 cacacgtatg cgtggggcag gcacataccc gagccgtttg aatgggcgtt gcggtttgag
     1501 ctcgtggcga agcagttgtt gcaggatggt gagtttgagc cgctcgtgaa tttcgagagt
     1561 ctcggaccgg atgcgttgct cgcgatcccg acaccggacc actacctgcc gctgctttac
     1621 gtgcttggcg ctcggcgaca agacgatgca atcacttttc cggtgcaggg ttttgacggc
     1681 ggctcgatct cgatgctggc agttcagttg ggatagttat tgaaggacgc cgtcgtacat
     1741 cacgccgatg tcggtcgtta agatcaggcg tttgtctttg atccacacct tctcgaccca
     1801 cgaggctgcg cctccggtct gcatgtagaa caccagcttg ccggtcgtgc gatcgaagat
     1861 gccgacgtcg cgatggtttc ccgcggtgac gagccaacgg tcgtcattcg ccagcgtcat
     1921 gaaatccacg cgcgagtgcc gctcgcgaat ctcgctgaga acgctggccg tagctttacc
     1981 ggtgctgatg tcccagtgcg tcagcgctcc ttcgttttca atggtataga cgttcaggcc
     2041 gtcgtcggtg acgaccagtg gtccaacatc gctggtctga attgcgatgg tcttgttcgt
     2101 gccggtttgt agatcaaaga ccgtcagctt ctgcgtctca tcgacgacgg ccaaccagcg
     2161 tttgttcgga gagatgccgg tagcgtcgat cattccgtct accagtaact cgctctggtt
     2221 ctggcttccg tccaggctcg cgaattttat gcggttgcct tcc
//
LOCUS       DASWTX010001323         2616 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_238082, whole genome shotgun sequence.
ACCESSION   DASWTX010001323 DASWTX010000000
VERSION     DASWTX010001323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2616
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_238082"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(115..801)
                     /locus_tag="VGD38_20155"
     CDS             complement(115..801)
                     /locus_tag="VGD38_20155"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0730409.1"
                     /translation="MTRPILIIEDDADISESLKYNFEREGLPAITAPTGEAGLSAALN
                     ERESPRLIILDLMLPGMSGIELCRRLRREPATRRTPIIMLTAKTSESDRVTGLDLGAD
                     DYITKPFSVRELLARVRAVMRRADETMGKTYEDDHLTIDFDDIRVLCDGAKIKLTNKE
                     FTLLSVLARSADRVVTRQQLLDSVWGYSYYGDARTLDVHIRRLRQKLDKCGDCIETVV
                     GVGYRFVGCR"
     gene            complement(805..1461)
                     /gene="phoU"
                     /locus_tag="VGD38_20160"
     CDS             complement(805..1461)
                     /gene="phoU"
                     /locus_tag="VGD38_20160"
                     /inference="COORDINATES: protein motif:HMM:TIGR02135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0051049 - regulation of transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HEY0730410.1"
                     /translation="MDLHRHLDDELSSLRDRVLLLGGEAELALERAMTALSQRDSDLA
                     REVLDHDDQVDHLEVEIDRQCIDIIALRQPAARDLRFVISVAKMAPVLERIADHACNI
                     ARTALDLNNEPELRSMLDLSRMSDHALKMLRGALDAFTSSDAAMAREIIKSDSEINDL
                     YNHSFHHLIELMVSEPATATRDARLLFVAKHLERIGDYVTDICELTVYMAEAAFIKHT
                     "
     gene            complement(1473..2306)
                     /gene="pstB"
                     /locus_tag="VGD38_20165"
     CDS             complement(1473..2306)
                     /gene="pstB"
                     /locus_tag="VGD38_20165"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HEY0730411.1"
                     /translation="MPVQTEPPKIEVGARRNNSAPVPSGGPAKVSVRDLNFFYGKVQA
                     LHNISIDIPERIVMAFIGPSGCGKSTFLRTLNRMNDVIPGTRVAGRVLIDDHDIYAPG
                     TDVVELRRRVGMVFQKSNPFPKSIFDNVAYGLRINRLTGNSSELHGRVEQALKDAALW
                     NEVKDRLKTSALSLSGGQQQRLCIARALAIRPEVLLMDEPASALDPIATSKIEELIFD
                     LKKQYTIVIVTHNMQQAARVSDTTAFFLLGKLIEVNSTEKMFTAPNEKLTEDYITGRF
                     G"
     gene            complement(2311..>2616)
                     /locus_tag="VGD38_20170"
     CDS             complement(2311..>2616)
                     /locus_tag="VGD38_20170"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY0730412.1"
                     /translation="QWRVTLGVVIPAAAPGIATGAMLAIARVSGETAPLLFTAFGSRF
                     FPTSLNEPIASLTVQIYNYAISPYDEWHAQAWAATLVLMTLVLGINIVVRFLTRKRF"
BASE COUNT          558 a          771 c          720 g          567 t
ORIGIN      
        1 atagtgcgcc ggcagaaaag aactcatccg gtgtattcgt gtcctcaaac tctcgcgctt
       61 gcgctttgtc gccctttgag agtgcttcaa ttagccaacg cctgagcaca agaatcacct
      121 gcaaccaaca aaccggtaac caactccgac aacagtctca atacaatcgc cgcacttgtc
      181 gagcttttgt cgcaaacggc gaatatgaac atccagcgtg cgcgcgtcgc cataataact
      241 gtagccccaa acgctatcca gcaattgctg gcgggtgacc acgcgatcgg cactgcgcgc
      301 gagcacggac aacaacgtga actctttgtt cgtgagcttg atcttcgcgc catcgcaaag
      361 cacgcgaatg tcgtcgaagt cgatcgtcag atgatcgtct tcgtacgtct tgcccatcgt
      421 ttcatcggcg cggcgcatga ccgcgcgcac gcgtgcgagc agttcacgta ctgagaacgg
      481 tttggtgatg taatcgtcgg cgccgagatc gagacccgtg acgcggtcgg attccgacgt
      541 cttcgccgtc agcatgatga ttggcgtgcg gcgcgtcgcg ggctcgcggc gcaaacgccg
      601 gcacagctcg atcccgctca tgcccggcaa catcagatcg aggattatca agcgcggcga
      661 ttcacgctcg ttcaacgccg cggacaaacc agcttcgccg gttggcgcag tgatcgcggg
      721 aagcccttca cgttcgaagt tgtacttcag gctctcggaa atgtcggcgt cgtcctcgat
      781 gatcaggatg gggcgcgtca tgatttaagt gtgcttgata aacgccgctt cggccatgta
      841 gacggtcaac tcgcagatgt cagtgacgta atcgccgatt cgttcgagat gcttggcgac
      901 gaacaggagc cgcgcatcgc gtgtcgcggt ggcgggttca ctgaccatca gttcgatcaa
      961 gtgatgaaaa ctgtggttgt agagatcgtt gatctcgctg tcgctcttga tgatttcccg
     1021 ggccattgca gcgtcgctgg aggtaaacgc atcgagtgcc ccgcgcaaca tcttcaacgc
     1081 gtgatccgac atgcggctca ggtcgagcat cgacctgagt tccggttcgt tgtttaaatc
     1141 gagcgcggtg cgagcgatgt tgcaggcgtg gtcggcgata cgttccagca ccggcgccat
     1201 tttcgccacc gagatcacga aacgcagatc gcgggccgcg ggctgtcgca gcgcgatgat
     1261 gtcgatgcat tggcgatcga tttccacttc caggtgatcg acctgatcgt cgtgatcgag
     1321 tacctcgcgt gctaggtcgc tgtcgcgttg gctaagcgca gtcatcgcgc gttcgagcgc
     1381 cagctccgcc tcgccgccga gcagcaacac gcggtcgcgt aaagaactta gttcgtcgtc
     1441 gagatgacgg tgcagatcca taaactactt aatcaaccaa accttcccgt aatgtaatcc
     1501 tcagtcagtt tttcattggg tgccgtgaac atcttctcag tcgagttaac ttcgatcaac
     1561 ttaccaagta agaaaaacgc cgttgtgtcg gaaacgcgcg cagcttgttg catgttgtgc
     1621 gtaactatca cgatggtgta ctgcttcttc agatcgaaga tcagctcttc aatcttcgac
     1681 gtcgcgatcg ggtcgagcgc cgacgctggc tcgtccatca ataacacttc cggacgaatc
     1741 gcgagcgccc gcgcgatgca caaacgttgc tgctggccgc cggaaagact caacgccgac
     1801 gttttcaaac gatcttttac ttcgttccac agcgccgcgt ctttcaacgc ctgttcgacg
     1861 cgcccgtgca gctccgaact gttgcccgtg agtctgttga ttcgcaaacc ataagcgacg
     1921 ttgtcgaaga tcgacttcgg aaacgggttc gacttctgaa acaccatgcc gacgcggcgc
     1981 cgcaactcca ccacgtcagt tcccggcgcg taaatgtcgt ggtcgtcgat caataccctg
     2041 ccggcgacgc gcgtgccggg aatcacgtcg ttcatgcgat tgagcgtgcg caggaacgta
     2101 gacttgccgc aacccgatgg accaatgaaa gccatcacga tgcgttcggg tatgtcgatc
     2161 gaaatgttgt gcagcgcctg caccttgccg tagaagaaat tcagatcgcg aacagacacc
     2221 ttcgccggac cgccgctcgg gaccggagct gaattattgc gcctggcgcc aacttcgatt
     2281 tttggaggtt cagtttgaac cggcatgaac ttagaacctc ttcctcgtca gaaaacgcac
     2341 gacgatattg attcctaaaa ccagcgtcat cagcaccagc gttgcggccc acgcctgcgc
     2401 gtgccattcg tcatacggcg agatcgcgta gttgtagatc tgcaccgtta acgaagcgat
     2461 cggttcgtta agcgaagtcg gaaagaaccg gctcccgaac gctgtgaaca gcaacggcgc
     2521 cgtctcaccc gagacgcgcg cgatcgcaag cattgctccg gttgcaattc ccggcgccgc
     2581 tgccggaatc acgactccca acgtcacgcg ccattg
//
LOCUS       DASWTX010001324         1538 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_16462, whole genome shotgun sequence.
ACCESSION   DASWTX010001324 DASWTX010000000
VERSION     DASWTX010001324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1538
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16462"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1380)
                     /locus_tag="VGD38_20175"
     CDS             complement(<1..1380)
                     /locus_tag="VGD38_20175"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY0730413.1"
                     /translation="MTPERWQQISRIFKSAISLDGAARAAYVANQCGTDESLRSEVEK
                     LLSSHRQASAEDFIGGRAADDGAVLLVTPEDLKPRLEKGQKLGSYLILDQLGAGGMGE
                     VYLAKDSRLERTVALKVLSPDISEDQRRMQRFRQEAKVASSLNQPNILTIYEFGEIDG
                     LTFLATEFIDGETLRSYLNHERLKVPETLDIAIQVLTALEAAHEARIVHRDIKPENVM
                     IRRRDRLVKVLDFGLAKVTEKRSATQHDLDTEAVTEFKTTPGVLMGTINYMSPEQARA
                     VAVDERTDIWSVGVMLYEMVTGVIPFGGPTSSHTLVQILDKELPAFPKVVDAPAELQR
                     IVRKALAKSPDERYQTAKDFAIDLKSLRRQLDVTRSTDAADEEPADKRAEKEPSKTRV
                     LVFALVAMAIVTAAFLGWSVWRAARARSSSVVVPAPGPVAPQPERRLTYSITVQEFRN
                     GKYEPPYTMA"
BASE COUNT          289 a          475 c          435 g          339 t
ORIGIN      
        1 cgccatcgtg tagggcggct catacttccc gttcctgaat tcctggaccg tgatcgaata
       61 ggtcaacctt ctctcgggct gcggcgcaac cggacccggc gcgggaacca caacggacga
      121 agaccgcgcc cgcgcagcgc gccaaacact ccaccccaaa aacgccgcgg tcacaatcgc
      181 catcgcaacc agcgcaaaca cgaggactcg tgtcttactc ggttcttttt ccgctcgctt
      241 gtcagcgggc tcttcgtccg cggcgtccgt gctccgcgtg acgtccaatt gccgccgcaa
      301 acttttcaag tcgatggcga agtctttggc cgtttgataa cgctcgtccg gactcttcgc
      361 cagcgctttg cggacgatcc gctgcaactc agcaggcgcg tctactactt tcggaaacgc
      421 aggcaattct ttatcgagaa tctgcacgag cgtgtgactc gacgttggac caccaaacgg
      481 tatcactccc gtcaccattt catagagcat cacgccaacg ctccagatgt cggtgcgttc
      541 gtcgacagcc accgcacgcg cctgctcggg cgacatgtag ttgatcgtgc ccatcagcac
      601 gccgggagtc gttttgaatt cggtgacggc ctcggtgtcg aggtcatgtt gtgttgcgct
      661 gcgcttctcc gtcactttcg ccaaaccgaa atcaagcacc ttcacgagcc gatcgcggcg
      721 gcgaatcatc acgttttcgg gcttgatgtc gcgatgaacg atgcgtgctt cgtgtgcggc
      781 ttcgagcgcg gtgagcacct gaatcgcgat gtcgagcgtt tcagggacct tgagccgttc
      841 gtggttcagg tagctgcgca gtgtttcgcc gtcgatgaac tcggtagcga gaaacgtcag
      901 cccgtcaatt tcgccaaact catagatcgt gagtatgttg ggttgattga gtgacgacgc
      961 gactttcgct tcctggcgga aacgctgcat tcgccgctgg tcttcggaga tgtccggcga
     1021 gagcactttc aaagcgacgg ttcgctcgag gcgcgagtcc ttcgccaggt aaacttcgcc
     1081 catgccgccg gcgccgagtt gatcgaggat gaggtacgaa ccgagtttct ggcccttctc
     1141 gagacgtggc ttgagatctt cgggtgtgac gagtaacacc gcgccatcat ccgcggcgcg
     1201 cccgccgata aagtcctccg cgcttgcctg ccggtgcgac gagagcagct tctcgacttc
     1261 cgaacgcaac gactcgtcag tgccacactg attcgccacg tacgcagcac gcgctgcacc
     1321 gtcgagcgag atcgcggatt tgaatatgcg gctgatctgt tgccaacgtt cgggagtcaa
     1381 ttggcaggac tttcacccag ttgttgataa agccaggctc gcgccatgtt ccagtcgcga
     1441 gtcaccgtgt tttcggaaat cttgaggaca cccgcgatct cctcgttgtt caagccgccg
     1501 aagtagcgca attccactac ctggctgcgg cgcggatc
//
LOCUS       DASWTX010001325         2433 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_146447, whole genome shotgun sequence.
ACCESSION   DASWTX010001325 DASWTX010000000
VERSION     DASWTX010001325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2433)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2433)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2433
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146447"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            51..>2433
                     /locus_tag="VGD38_20180"
     CDS             51..>2433
                     /locus_tag="VGD38_20180"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY0730414.1"
                     /translation="MVGKTLRNYRITEKLGVGGQGAVYKAVDNKLGRTVVIKVIPPEL
                     SAKETNLKRFEREARLASSLDHPNICTIFDLDEQDGMHFIAMQYVEGKNVRQLVAGRP
                     LELKTALLIGLQVADALAAAHSRGIIHRDIKSGNVMVTSAGQVKVLDFGLAKLLDDDQ
                     ATTRGIHHTELTEVGVPYGTATYAAPEQARGDRVDKRADIFSLGVLLYEMLTGTWPFR
                     GKTTIDVRHAVLHDPPRPIPELRGSPIPSRLQQIVDRALEKEPRDRFQNMDDFRNELR
                     QVLQDVDAGAVAYQGVSPEPPRHLAGAKNPVSRAVRWLKSITRSEVPTTSPNLITPSK
                     QGIHETPFTTVTDQEKKSLAILCFRNLANDPSASFYEFSLADAVITELARVRSLVVRP
                     SSVIARYQGQQRDPREIGQELNVSAVLTAGFIHAGERFRVTAQLIDVASGELLWSDRI
                     DTAASDIIVLQDTIAQRIVEGLRVELSPAEQSGIFKAATQNPTAYEQYLRGRDLFARF
                     IFRTLSREDCDAAIAHFERAIELDPNFALAHDGIGACYVNRVFKGFGGSEDYERAEEA
                     FHRALEIDANIFEARMLMVFVYLWRGRKEKAWEEVNRARKEASNEPVVHFVKAMLHRL
                     DGEYGRALHSYDRLVRLDPAAHVVASYSRALVYMYLGNFDEVFRQLDNAGEPDNALVQ
                     TFRALGLYYTGQTDAAATLMRGVVEKHPNMHGIRPFMAMFLSAQGKHDEALAQLSSDV
                     KRNGEVDADISYSIGSVYALAGLPNDAFEWLERSTSLGNANKPCFENDPNLVSL"
BASE COUNT          522 a          781 c          707 g          423 t
ORIGIN      
        1 gttgccgcac aggtctgaac caccagcacg tctgaacgcg ccacacagcc atggtaggca
       61 agactcttcg caactatcgc atcacggaaa agctcggcgt gggcggtcag ggagctgtct
      121 acaaggccgt cgataacaaa ctcggccgca ccgtggtcat caaggtcatt ccacccgaac
      181 tcagcgcgaa ggaaacaaac ctcaaacgct tcgaacgcga agcacgcctc gcctcgtcgc
      241 tggaccaccc gaacatctgc accatcttcg atctcgacga acaggacggc atgcacttca
      301 tcgccatgca atacgtcgag ggcaagaacg tgcgccagct ggtcgccggc cgtccactcg
      361 aactcaaaac cgcccttctg atcggtctgc aagtcgccga cgcactcgcc gccgcacaca
      421 gccgcggcat cattcatcgc gacatcaaat ccggcaacgt gatggtcacg tccgccggcc
      481 aggtgaaggt gctcgacttc ggtctcgcga aacttctcga cgacgatcaa gccaccacca
      541 gaggaatcca ccacaccgag ctaacggaag ttggagttcc ctacggcacc gcaacctacg
      601 cagcgcccga acaagcgcgc ggcgatcgcg tcgacaaacg cgccgacatc ttttctctcg
      661 gcgtgctgct ttacgaaatg ctcaccggca cgtggccgtt tcgcggcaag acgacgatcg
      721 acgtgcgtca cgccgtgctg cacgatccgc cgcgcccgat tccggagttg cgcggcagcc
      781 cgatcccgag ccgcctgcaa cagatcgtcg atcgcgccct cgaaaaggaa ccgcgagatc
      841 gttttcaaaa catggacgac tttcgcaacg aattgcggca agtgcttcag gacgtggacg
      901 ccggcgccgt cgcgtatcag ggcgtctcac cggaaccgcc gcgccatctc gcgggcgcaa
      961 agaatccggt gtcgcgcgcg gtgcgctggc tcaagtcgat tacgcgcagt gaagttccaa
     1021 ccacgtcgcc caatctcatc acgccctcga agcaaggcat acacgaaacg ccgttcacga
     1081 cagtcaccga tcaagagaag aagagtctcg cgattctttg cttccgcaac ctggccaacg
     1141 atccgagtgc gagtttttac gaattctcgc tcgcggacgc ggtgattaca gaactggcgc
     1201 gcgtgcgctc gctcgtcgtg cggccatcgt ccgtgatcgc gcgctaccag ggacagcaac
     1261 gagatccacg cgagatcggg caggagctga acgtgagcgc cgtcctgacc gccggcttca
     1321 ttcacgccgg cgaacggttc cgcgtcacag cgcagttgat cgacgtcgct tcaggcgagt
     1381 tgttgtggag cgatcgcatc gacaccgccg cgtcagacat catcgtgctg caggacacga
     1441 tcgcgcagcg catcgtcgaa ggtttacgcg tcgagctgag cccggccgag cagtcgggaa
     1501 tctttaaagc cgcgacacaa aacccgaccg cctacgaaca atacctgcgc ggccgcgatc
     1561 tgttcgcgcg tttcatcttc cgcacgttgt cgcgcgaaga ctgcgacgcc gcaatcgcgc
     1621 atttcgaacg cgcgatcgaa ctcgatccaa acttcgcgct cgcacacgac ggcatcggcg
     1681 cgtgttacgt gaaccgcgtc ttcaaaggct tcggcggctc ggaagattac gaacgcgccg
     1741 aagaagcttt ccacagggcg ctggagatcg acgcaaacat tttcgaagcg cgcatgttga
     1801 tggtgttcgt ttacctgtgg cgcggccgga aagagaaggc gtgggaagag gtcaaccgcg
     1861 cgcgcaagga agcgtcgaac gagccggtgg tccacttcgt caaagcgatg ctgcatcgtt
     1921 tggacggcga gtatggccgc gcgttgcaca gctacgatcg cctcgtgcgg ctcgatccgg
     1981 cggcgcacgt cgtggcgagt tacagccgcg cgcttgttta catgtacctc ggcaacttcg
     2041 acgaggtctt ccgccagctc gacaacgccg gagaacccga caacgcgctg gtccaaacgt
     2101 ttcgggcgct cggtttgtat tacactggcc agaccgacgc ggccgcgacg ttgatgcgtg
     2161 gcgtggtcga gaagcatcca aacatgcacg gcattcgccc gttcatggcg atgtttctga
     2221 gcgcgcaggg caagcacgac gaggcgctgg cgcaactaag cagcgacgtg aaacgaaacg
     2281 gcgaagtcga cgcggacatc agttactcga tcggttcggt gtacgcgctc gcgggtttgc
     2341 ccaacgatgc gttcgagtgg ctcgaacgat cgacgtcgct cggcaacgcg aacaagccgt
     2401 gttttgaaaa cgacccgaat ctggtttcac tcc
//
LOCUS       DASWTX010001326         2090 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_211627, whole genome shotgun sequence.
ACCESSION   DASWTX010001326 DASWTX010000000
VERSION     DASWTX010001326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2090
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211627"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..581
                     /locus_tag="VGD38_20185"
     CDS             <1..581
                     /locus_tag="VGD38_20185"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEY0730415.1"
                     /translation="VTGDQARARVHVLRHAYDAILVGAGTVLKDDPLLTDRSGLRRRR
                     PLVRVVLDDKVQLSPESKLATTTAESPVLVVGRAEGRDLRGLFDKGVEILSLDPKNLL
                     PVLDALGRRGIQSVLVEGGAAIAGSFIDARLANKITFFVAPKIIGGADAPIAVGGKGI
                     ERMAEALELERISVIQHGRDVEVTGYPAGQTT"
     gene            578..1390
                     /gene="rsmA"
                     /locus_tag="VGD38_20190"
     CDS             578..1390
                     /gene="rsmA"
                     /locus_tag="VGD38_20190"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: protein motif:HMM:TIGR00755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEY0730416.1"
                     /translation="MSADEPIPSKRFGQHFLRDKRTIQRIIDALAPRNDETIVEIGPG
                     TGALTAQLIERAGRVIAVEFDNKLAPVLTEQFGSFPNFKLVMGDALTTDFCREIEPAV
                     RARLVANLPYNISTAILQRLIEQRACLGEMVVMLQREVVERMMAPAGSSERGFLSVLI
                     EAYCETEKLFDVGPGAFRPPPKVWSSVIRLRFKDVSIPLEGLFWKTVSRGFSQKRKTI
                     LNNLRQATGNLADVLKRNGGASIVLCKANVELSRRAETLTIDEWSRIVKAMG"
     gene            complement(1346..>2090)
                     /locus_tag="VGD38_20195"
     CDS             complement(1346..>2090)
                     /locus_tag="VGD38_20195"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEY0730417.1"
                     /translation="IVYRIIAERRASGYDEGDLLSMLLQAQDDDGSHMSDQQLRDEVM
                     TLFLAGHETTALALSWSWYLLAKHPEAERKFHEELDEVLDGRLPDVSDMARLKYTEMI
                     AKEAMRLYPPAYAVGREAVEDTELGGYAVPRGTQLFAFQWVTHRDPRFFERPDAFEPE
                     RWASEAVEKMPKYAYFPFGGGPRQCIGNYFAMMEIVLLLATIGQRFRFSLDERHQVEV
                     LPVLSLRPKSGIKVKLSHRFNNSTPLVDR"
BASE COUNT          469 a          611 c          591 g          419 t
ORIGIN      
        1 gggtaaccgg ggaccaggcg cgcgcgcggg tgcatgtgtt gcggcatgcg tacgacgcga
       61 ttctcgtcgg cgcgggcacg gttttgaaag acgatccttt gttgacggat cggtcgggtt
      121 tgcgtcgaag aaggccgctg gttcgcgtcg tgcttgacga caaggtgcaa ctgtcgcccg
      181 aatcaaagtt ggccacgacg accgctgaat ctccggtgct cgtagtcggg cgagcggaag
      241 gaagggattt aagaggattg ttcgacaagg gcgttgagat cctttctttg gatccgaaaa
      301 atctcctccc tgtattagac gcgctaggtc gtcgtgggat tcaaagcgtg ctcgtcgaag
      361 gcggcgcggc gatcgccggc agcttcatcg atgcgcgcct cgcgaacaag atcactttct
      421 tcgtagcccc gaagatcatc ggcggcgccg acgcgccgat cgccgtcggc gggaagggaa
      481 tcgagcgcat ggccgaagcg ctcgagctcg aacgaatttc agtgattcaa cacggccgcg
      541 atgttgaggt cacaggctat ccggcaggac aaacaacgtg agcgccgacg aaccaattcc
      601 ttccaaacgt ttcggccagc acttcctcag agacaagcga acaattcaac gcatcatcga
      661 cgcgctcgcc ccgcgaaacg acgaaacgat cgtcgagatt ggaccaggta ccggtgcgct
      721 caccgcgcag ttgatcgaac gtgcgggtcg tgtaattgcc gtcgagtttg acaacaaact
      781 cgcgccagtc ttgacggaac agttcggcag ttttccaaac ttcaaattgg tcatgggaga
      841 cgcgctgacg accgatttct gccgcgagat cgaaccggcg gttcgggcgc ggctagtggc
      901 gaatcttccg tacaacatct cgacggcaat cctgcagcgg ctgatcgagc agcgtgcgtg
      961 tctgggcgag atggtcgtga tgctccagcg cgaagtggtg gaacgaatga tggcgcccgc
     1021 gggatcgagt gaacgaggtt ttctgtcggt attaattgag gcttattgcg agacggagaa
     1081 actgtttgat gttggaccag gcgcgtttcg cccgccgccg aaggtttgga gcagtgttat
     1141 ccgtttacgt ttcaaagacg tctcaatacc acttgaaggc ctgttttgga agaccgttag
     1201 ccggggattt tcacagaaga ggaaaacgat tctgaataac ttaagacagg cgaccggcaa
     1261 tctcgccgac gtgctcaagc gcaacggcgg cgcgagtatc gtgttgtgta aagccaacgt
     1321 agagctgagc cggcgcgcgg agacgttaac gatcgacgag tggagtcgaa ttgttaaagc
     1381 gatgggatag cttcaccttg atcccgctct tcggccgcag cgaaagcacc ggtaatactt
     1441 ccacctgatg cctttcatcc agtgaaaacc taaaccgctg cccaatcgtc gcgagcaata
     1501 aaacgatctc catcatcgcg aagtagttgc cgatacactg ccgtggtcca ccgccaaacg
     1561 gaaagtacgc atacttcggc atcttctcaa cggcctcact cgcccaacgc tcaggctcga
     1621 acgcatcagg acgctcaaag aaacgcggat cgcgatgcgt cacccactga aacgcaaaaa
     1681 gctgcgtccc gcgcggcacc gcatacccgc ccaactccgt gtcttcaacc gcctcacgcc
     1741 cgacggcata agccggcgga tacagccgca tcgcttcctt cgcgatcatc tccgtgtact
     1801 tcaaccgcgc catatccgaa acgtccggca ggcgcccatc gagcacctca tccaactctt
     1861 cgtgaaactt ccgctccgct tccggatgct tcgccagcag ataccagctc cacgataacg
     1921 cgagcgccgt cgtttcgtga cccgcgagaa acaacgtcat cacttcgtcg cgcagttgct
     1981 ggtcgctcat gtgactacca tcgtcatcct gcgcctgaag caacatcgac aacagatcgc
     2041 cttcgtcata accactggca cgccgttccg cgatgatcct gtacacaatg
//
LOCUS       DASWTX010001327         3229 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_189876, whole genome shotgun sequence.
ACCESSION   DASWTX010001327 DASWTX010000000
VERSION     DASWTX010001327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3229
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189876"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>3229
                     /locus_tag="VGD38_20200"
     CDS             <1..>3229
                     /locus_tag="VGD38_20200"
                     /inference="COORDINATES: protein motif:HMM:NF013961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase domain-containing protein"
                     /protein_id="HEY0730418.1"
                     /translation="ATVADIPRLEALISKNGSRKEVDDEIKASIKKINFRNELTTAKT
                     EDERREIIHKALADASLAHFAWAFYCEAGTEGCTSNPAELKRDVAIKSFAENLFPKRV
                     EHFTAIPNPRQAVQKFYETLNGLQMDSPRDQSHLVIMLIGLRRTLGGQLAAPYDADTL
                     IDYTGIDPDSPIALGAWTSSNAHQSAMSAQRKAIVLRVKDRARFERTVEKLHSGVGGV
                     SFLTNTAAIVTRAIAALPAVLPLSAQMVLSPDGETSKPITRSLLSYEVVADEEWNGLR
                     VRTINHTAINSSWIVESTTTHIAYLGDVAILAPDLATIRELLVNANGASDKQLADNPE
                     FQQSFGGKGESQGDIVYFSDLKAVFGKSGDAEKSAAHERGALKFSASSWENSHHLVFA
                     ESEWSKPLLPFQAKELTAPRELLPASTIAYFLTRVDLLALWASSSKDLFSPIELGVFE
                     GAWALDFKQDVLPELGPECGVVLLKSPTNSDLDNSAVTAFCKLKSNKLADALTAGKLF
                     RNVGPTTGVAELKLGSDTYFVAARNGFFVISNHAKGLTDLDGKTNLAATRDYSRSVEK
                     VPAGVIAFGGYNLEAAISGVNKAAFEGPRKQLADFLFSVTSAFHSQNFYATATAGTIN
                     AHSSVAMDREGRYPVANFSDLRRGTNITFAVVEPSGVPITDQNRTSSLTLKVRAKAAG
                     PIDNIKDDIKTTDQVVELKSPTELVVTVAARRSGAEKAFQLPIKDPALAEFLKPTPEF
                     AADKQEVIEQARQIAGKDRDAWSVARKLADWTHKNLEWKSVASADPVATLATREADCT
                     EFSALFIGMARSLGLPARMVSGLAYSGNSFGGHAWVEVWIGKWIELDPTWGTNFVDAT
                     HIRATGDALLIAAGLKLVDLEVIEAKRTIAEFQKTPRALAEHLAKAIPASDRTEIEAA
                     MDVSLLTDLHMGAGAWARLSESEREQMWSAYRRALNEMVVNYEQEDGITQTIRVLHVE
                     EKGDTAEAICLNDPVDKLLKFRFVRRDNVWYLVEAEQADHGFAVASEMLRPAISNIEK
                     TRAGEKAPALVMSDYVRVWVLLDQDTAKALRVADEALKANPKDRGL"
BASE COUNT          729 a          906 c          961 g          633 t
ORIGIN      
        1 gcgacagtcg ccgacatccc gcgcctcgaa gcgctgattt caaaaaacgg ttctcgaaaa
       61 gaggtcgacg acgaaataaa ggcctcgatc aagaagatca acttccgaaa cgaactcacc
      121 accgcaaaaa ccgaggacga acggcgcgag atcatccaca aggcacttgc agacgcttcg
      181 ctggcgcact ttgcctgggc tttctattgc gaagcaggca ccgaaggctg cacgtcgaac
      241 cccgccgagt tgaaacgcga cgtcgcgatc aaatcattcg cggaaaatct ctttccgaaa
      301 cgagtcgaac acttcaccgc gattccgaat ccgcgtcagg ccgtgcagaa gttttatgaa
      361 acgttgaacg gtctgcaaat ggattctccg cgcgatcagt cgcaccttgt gataatgctg
      421 atcggtctgc ggcggacgct cggcggccag ttggctgcgc cttacgatgc cgacacgctc
      481 atcgattaca ccggcatcga tcccgattcg ccgatcgcgt tgggcgcgtg gaccagttcg
      541 aacgcgcacc agagcgccat gagcgcgcaa cgaaaagcga tcgtgttgcg cgtgaaggat
      601 cgcgcacggt tcgaacgcac ggtcgagaaa ctccatagcg gcgtcggagg cgtctctttc
      661 ctgactaaca ctgccgccat cgtcacgcgc gcaatcgcgg cactgccggc ggtactgcca
      721 ttaagcgcgc aaatggtgct ttcacctgat ggtgaaacgt cgaaaccgat aacccgctct
      781 ttgctgagtt acgaagtcgt ggccgatgag gaatggaacg ggctgcgcgt caggaccatc
      841 aatcacaccg cgatcaattc atcgtggatc gtcgaaagca ctacgactca cattgcttac
      901 ctgggcgacg tcgcgattct cgcacccgat ctggcgacca ttcgcgaact gctggtgaat
      961 gcaaacggcg ccagcgacaa gcaactcgcg gacaatcccg aatttcagca aagcttcggc
     1021 ggcaagggcg agagtcaggg cgacatcgtt tacttcagcg atctcaaggc ggtgtttggc
     1081 aaatccggcg acgcggagaa gagcgctgcc catgagcgcg gggcgctgaa gttctctgct
     1141 tcgtcgtggg aaaactcgca tcatctggtt tttgccgaga gcgaatggtc caagccgctg
     1201 ctgccgttcc aggcaaagga actgacagcg ccgcgcgagt tgctgcccgc ttcgacgatc
     1261 gcttacttcc tgacgcgagt cgatctgctc gcgctttggg cctcgtcgtc gaaagacctg
     1321 ttttcgccga tcgagcttgg agtttttgaa ggcgcatggg cgctcgattt caaacaggac
     1381 gtgctgccgg aactcggtcc cgaatgcggc gtcgtgctac tcaagtcgcc cacgaattca
     1441 gatctcgaca actccgcggt caccgcgttt tgcaaactga agagcaacaa gctcgcggat
     1501 gcgttaacag caggaaagct ctttcgcaac gttggaccaa caacgggcgt cgctgaattg
     1561 aaactcggtt cggatacgta cttcgtcgcc gcgcgcaacg gattcttcgt catctccaat
     1621 cacgccaaag gactcaccga tctcgacggc aagaccaatc tcgccgctac acgcgattac
     1681 tcgcgatcgg tcgagaaggt tccggccggc gtcatcgcgt ttggtggata caacctcgaa
     1741 gccgcaatca gcggtgtaaa caaggcggca ttcgaaggac cgcgaaagca gctcgcggat
     1801 tttctcttct cggttaccag cgcgtttcac agtcagaact tctacgcgac cgcaactgct
     1861 ggaacgatca acgcgcattc gtcagtcgcg atggaccgcg agggacgtta tccggttgct
     1921 aacttctccg atctacgtcg cggcacgaac atcactttcg ccgttgtcga gccgagcggt
     1981 gtgccgatta cggaccaaaa ccgcaccagc agtctcacgc tgaaagttcg cgcgaaagct
     2041 gctggtccga tcgacaacat caaggacgac atcaagacca cggatcaggt cgtagaactg
     2101 aagtcgccga cagagttagt tgtaacagta gcggcgcgtc gcagcggcgc tgagaaagcg
     2161 tttcagttgc cgatcaaaga tccggcactc gcggagtttc tcaaaccgac gccggagttc
     2221 gccgccgaca agcaggaagt gatcgaacag gcgcgtcaga ttgcgggcaa agatcgcgac
     2281 gcgtggagtg tggcgcgcaa gctcgccgac tggacgcaca agaatctcga gtggaagtcg
     2341 gttgcgagcg cggacccggt tgcgacactc gcgacgcgtg aagctgattg caccgagttc
     2401 agtgcgctgt ttatcggcat ggcgcgctcg cttgggttgc cggcgcgcat ggtttccggc
     2461 ttggcttaca gcggtaattc gtttggcgga catgcgtggg tggaggtttg gatcggcaaa
     2521 tggatcgagc tcgatccgac gtggggcacg aattttgtcg atgcgacgca cattcgcgct
     2581 accggcgacg cgctgttgat cgccgccggt ttaaagctgg tcgacctgga agttatcgaa
     2641 gcgaagcgaa ctatcgccga gtttcaaaag actccgcgcg cgctcgcgga acatctcgcg
     2701 aaagcgattc cggccagtga cagaacagag atcgaagcgg ccatggatgt ttcgctactc
     2761 accgatttgc acatgggtgc gggcgcgtgg gccaggttga gcgaaagcga acgcgaacag
     2821 atgtggtcgg catatcgcag agcgctcaac gagatggttg tgaattacga gcaggaagac
     2881 ggcattacgc agaccattcg ggttttgcat gtcgaagaaa aaggcgacac ggcggaagcg
     2941 atctgtctga acgacccggt tgacaagctg ttgaagttcc ggtttgtacg ccgtgataac
     3001 gtttggtacc tcgtcgaggc ggagcaggcc gatcacggat ttgccgttgc ttccgagatg
     3061 ctacgtccgg cgatctcgaa tatcgaaaag actcgcgcgg gagaaaaagc tccggcgctg
     3121 gtgatgtcgg attatgtcag agtctgggtg ctgctcgatc aggacactgc aaaggcgctg
     3181 cgtgtcgcgg acgaagcctt gaaagcgaat ccgaaggacc gcggtttgc
//
LOCUS       DASWTX010001328         2721 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_146454, whole genome shotgun sequence.
ACCESSION   DASWTX010001328 DASWTX010000000
VERSION     DASWTX010001328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2721
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146454"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..364
                     /locus_tag="VGD38_20205"
     CDS             <1..364
                     /locus_tag="VGD38_20205"
                     /inference="COORDINATES: protein motif:HMM:NF014630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="C4-type zinc ribbon domain-containing protein"
                     /protein_id="HEY0730419.1"
                     /translation="TLNSDREARLKAFDEETQRQSQQLIAARAERDQVFANLPKPMSA
                     MYSRISARIRDGVAVAEARNRSCSACFMALRPQVMAEIRRGEEIITCDNCGRILYYVP
                     ADSVQSDNVATQPNVAVT"
     gene            449..1429
                     /gene="galE"
                     /locus_tag="VGD38_20210"
     CDS             449..1429
                     /gene="galE"
                     /locus_tag="VGD38_20210"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEY0730420.1"
                     /translation="MRVLVTGGAGYIGSVVTEQLIGDGHEVVVYDNLSKGHRGAVVEG
                     AEFVQASLSDAETLRTTLSDRKVEAVIHMAASSLVGESVEQPGKYYVNNVVAGLMLLE
                     TMLLCDVKRLVFSSTAAVYGEPEAQPIEESAPTNPTNPYGETKLAFEHALKWFDRAHG
                     LRFASLRYFNAAGATENCGEDHDPESHIIPITLQAAAGKRSHVEIFGEDYPTPDGTCI
                     RDYIHVIDLARAHIQALGALNEGSRIYNLGCGGAGYSVRDVIDTAARVTGKEIPTRFG
                     PRRAGDPAVLVASSDKIKSELGWRPQYQDLGLIIESAWRWMQTHPNGYSE"
     gene            complement(1431..2060)
                     /locus_tag="VGD38_20215"
     CDS             complement(1431..2060)
                     /locus_tag="VGD38_20215"
                     /inference="COORDINATES: protein motif:HMM:NF016176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEY0730421.1"
                     /translation="MHKRTITIAILLATLAAAAFAMSPQQVTYTLDAGRSKFMTHANR
                     SGLLWFKGKSHHLAASDFSGTVQLTPQSLTPASLRLVVKAASLHETGADFTDQEKQII
                     DKELKDIVLHPDQYPEIVFQSTNVTARPAKTGGGYDVRLIGDLTLHGTTRRIEIPATV
                     TLNGDEIRAVGKFSIDRDDYKVKATSAFHGMVRVDDDVKFEFDIVGKRQ"
     gene            2108..>2721
                     /locus_tag="VGD38_20220"
     CDS             2108..>2721
                     /locus_tag="VGD38_20220"
                     /inference="COORDINATES: protein motif:HMM:NF045432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730422.1"
                     /translation="MVKTTRQKGGMIVTVQEFLTLDQPKGDLVLQVGRERVSVTSLDR
                     IYWPDEKLTKFDLLCYYLKVADRIMPFLKDRPAILQRWPRGIKAPMFFQQDLESAPEF
                     IKTKRLTNQEGRELDYAVFSTIGSVIHFVNLGNIEQHPWHSTVKHLDKPDWIAIDLDP
                     KSAPWENVLQVALVVKEVADEIGLDVFPKTSGSSGLHVYVPLKPA"
BASE COUNT          561 a          753 c          815 g          592 t
ORIGIN      
        1 cacactcaat tccgatcgcg aagcgcgcct caaagcattc gacgaagaga cccagcgaca
       61 atcgcaacaa ctgatcgccg cgcgcgccga gcgcgaccag gtcttcgcca atctcccgaa
      121 accgatgagt gcgatgtatt cgcgcatcag cgcgcgtatt cgcgatggcg tcgcggttgc
      181 ggaagcgcgt aatcgttcgt gcagcgcgtg cttcatggcg ctgaggccgc aagtgatggc
      241 ggaaattcga cgcggtgaag agataatcac gtgcgacaac tgtggccgca tcctttatta
      301 cgtgccggca gattctgtgc agagtgacaa tgtcgcaacg cagccaaacg tggcggttac
      361 ctgagatcga cgccgatccc gttcgcgccc tcgtagtagt tccttcctcc aatcaactga
      421 aacggttcat cccgaaggga gttagtgtat gcgtgtgctt gttaccggag gcgccggata
      481 catcggcagc gtagtgacgg agcaactgat cggcgacggt catgaggttg tcgtgtacga
      541 caatctttca aaggggcatc gcggcgcggt cgtcgagggc gcggagtttg ttcaggcgtc
      601 gctgagtgat gctgaaacac tgagaacgac gctgtccgac cgcaaagtcg aagcggtgat
      661 tcacatggcg gcctcttcgc tcgtcggcga gtcggttgaa caaccgggca aatactatgt
      721 gaacaacgtc gtcgccggcc tgatgttgct cgaaacgatg ctgctttgcg acgtcaaacg
      781 gttggtgttc tcgtcaactg ccgcggtcta cggcgagcct gaagcacaac cgatcgaaga
      841 gagcgcgcct acgaatccca cgaatcccta cggcgaaaca aaactcgctt tcgagcacgc
      901 gctgaagtgg ttcgatcgcg cgcatggtct acgtttcgcg tcgcttcgtt atttcaacgc
      961 tgccggcgcg acggagaact gtggcgagga ccacgatccc gaatcacaca tcattccgat
     1021 cacgttgcaa gctgctgccg gaaagcgttc gcacgttgag atcttcggcg aagattatcc
     1081 gacgcccgac ggcacgtgca tccgcgacta cattcacgtg atcgatctgg cgcgcgcgca
     1141 catccaggcg ctgggggcgt tgaatgaggg aagcaggatc tacaatcttg gttgcggcgg
     1201 cgcgggttac agcgtgcgtg acgttatcga caccgccgcg cgtgtgaccg gcaaagagat
     1261 tccgacgcgc tttggaccac ggcgcgcggg cgatccggcg gtcttggttg cgagctcaga
     1321 caagattaag agcgagctcg gttggcggcc gcagtatcag gacttgggat tgatcatcga
     1381 gtcagcgtgg cgttggatgc aaacccatcc gaacggatac agtgaatagg tcattggcgt
     1441 ttgccgacga tgtcgaactc gaacttcacg tcgtcgtcga cgcggaccat tccatgaaac
     1501 gccgacgtgg ctttcacttt gtaatcgtcg cgatcgatgc tgaactttcc taccgctctt
     1561 atctcgtcgc cgttcagcgt cacggttgcg ggaatctcga tccggcgcgt ggtgccgtgt
     1621 aatgtcaggt cgccgatcaa ccgcacgtcg taacctccgc cggtcttcgc tggcctcgca
     1681 gtcacgttcg tgctctggaa aacgatctcg ggatactgat ccggatgcag cacgatgtct
     1741 tttagttcct tatcgatgat ctgtttttcc tgatccgtga agtctgctcc ggtctcgtgt
     1801 agtgatgctg ctttgacgac caggcgcagc gacgcgggcg tcaggctttg cggcgtcagt
     1861 tggaccgtgc cgctgaagtc gcttgccgcc agatggtggc tcttgccctt gaaccaaagc
     1921 aggcccgaac ggtttgcgtg ggtcatgaac ttgctgcggc cggcgtcgag tgtgtaggtg
     1981 acctgctgcg gggacatcgc aaacgccgcc gccgcgagcg tggccagtaa aatcgcgatc
     2041 gtgatggttc gtttatgcat tgcaaatacc tccgagacag atctggcgga gtatacttac
     2101 gcacatcatg gttaagacaa cgcgccaaaa aggtggaatg atcgtcacgg tccaggaatt
     2161 tttgactttg gatcagccca aaggcgattt ggtcttgcaa gtcggccgcg aacgcgtttc
     2221 ggtcacgagc ctcgatcgca tctactggcc cgacgagaaa ctcacgaagt ttgatctgct
     2281 ctgttactac ctcaaagtcg cggatcgcat catgcccttt ctgaaagata gaccagcgat
     2341 cctgcaacgc tggccgcgcg gcatcaaggc gccgatgttt ttccagcagg acctcgaaag
     2401 cgcgccggag tttatcaaga ccaagcggct tacgaaccag gagggacgtg agctcgatta
     2461 cgctgtcttt tcgacgatcg gttcggtgat ccatttcgtc aatctcggaa acatcgagca
     2521 gcatccgtgg cactcgactg tcaaacatct cgacaaacct gactggattg cgatcgacct
     2581 cgatccgaag agtgcgccgt gggagaacgt gttgcaggtc gcgctggtcg tgaaggaagt
     2641 tgccgacgag atcgggctgg acgtttttcc gaagacttca ggctcgtcgg ggttgcacgt
     2701 ttatgtgccg ttgaagccgg c
//
LOCUS       DASWTX010001329         2526 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_280029, whole genome shotgun sequence.
ACCESSION   DASWTX010001329 DASWTX010000000
VERSION     DASWTX010001329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2526
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280029"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2014)
                     /locus_tag="VGD38_20225"
     CDS             complement(<1..2014)
                     /locus_tag="VGD38_20225"
                     /inference="COORDINATES: protein motif:HMM:NF019317.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDIG domain-containing protein"
                     /protein_id="HEY0730423.1"
                     /translation="MVLEPRTRFLIGCAILVTLTTALLISDYSPGFSEVYKEGEVLAR
                     DIVAPADITAVDEGETERRKVTAREATRPVFNYDSSRAETSVESLRAGWDELLQQIAP
                     DKSVPETERDRLAAIVREISAGYIYDDNDANRMQQDIVLVDQRNQATQMIFPAPRTSM
                     SSLSGARQKLDTRILYLQGWTPQEKTALAAALRPLIRPNVVLEQAATAAARENAANEV
                     KPVVITLKRNQVVAREGDTVTPAILSQINAIKNTTHPGRRWSNLFGLLIVVVAVYWAA
                     WKFAQHRRESALSISKQKAFALVGSAILVQTALMKVGFTFGDSVAARMHAPFNDPMIW
                     NFAIPFAAASLLVAMLVDTQLAFLTAMMTALFAGMLAPGGMQKALFAMVSCSVAIYGI
                     GRYRERQSVTLAGLLVGAINAVMAVALLAYSGQSLTFRHFLLAMGCGFAGGLLTAVFA
                     AGGLPINESLFGILTDVKLLELSNADLPVLGQLALRAPGTNQHSHAVGQLAEDACRAV
                     GANPLLARIGALYHDIGKLAAPEYFVENQQGDNPHDRLRPYQSAKIITSHVTYGSRLA
                     KEIGLPQKIADFIPQHHGTRTLHYFLRKAQAQAKPNETVDEADFRYPGPKPQFKEAAI
                     MMLADSCEAAARSLARPDPENIRAIVMKIVDAIISDGQLDQCDITLQ"
     gene            complement(2092..>2526)
                     /locus_tag="VGD38_20230"
     CDS             complement(2092..>2526)
                     /locus_tag="VGD38_20230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730424.1"
                     /translation="REQEVIINDTVGFIRALPPDLLSAFRATLEEISDSSLLIHAVDV
                     SNPRWVQQVQSVKRILAELKLADIPTILALNKSDLLDPDEVDAAVREARQIDNSEIVV
                     ISAIKLASLTALLEKAGGMLARNLGAESAADDNESAALSRIA"
BASE COUNT          467 a          751 c          783 g          525 t
ORIGIN      
        1 cctgcaacgt gatgtcacac tggtcgagct ggccgtcact gatgatggca tcgacgatct
       61 tcatgacgat cgcgcggatg ttctccggat cgggacgcgc gagcgatctc gcagcggctt
      121 cgcacgagtc ggcgagcatc atgatcgccg cttctttgaa ttgcggcttt ggtccgggat
      181 aacggaagtc ggcctcgtcg actgtttcat tcggcttcgc ttgcgcctgc gctttgcgca
      241 ggaagtagtg aagcgtgcgc gtgccgtgat gctgcggaat gaagtccgcg atcttctgtg
      301 gcagtccgat ttcttttgcg agacgcgagc cgtaggtgac gtgactcgtg atgatcttgg
      361 cgctttggta ggggcgcagt cgatcgtgcg gattgtcacc ctgctggttt tcgacgaagt
      421 attcgggcgc ggcgagtttg ccgatgtcgt gatacaaagc gccgatgcgc gccagcagcg
      481 gattcgcgcc gaccgcgcga cacgcgtcct cggcaagttg tccaacagcg tgcgagtgct
      541 ggtttgttcc cggcgcgcgc aacgcgagtt gaccgagcac cgggagatcc gcgtttgaga
      601 gttcgagtaa tttaacgtcc gtcaggatgc cgaacagcga ttcgttgatt ggcaatccgc
      661 ccgccgcgaa gaccgcggtg agaagcccgc cggcaaaacc gcagcccatc gccagcagaa
      721 aatgcctgaa cgtcaacgac tggcccgaat acgcgagcag cgcgacggcc atcacggcat
      781 tgatcgcgcc cacgagcagg cccgccagtg tgactgactg ccgctctcga taacgcccga
      841 tgccgtagat cgccaccgaa cacgaaacca tcgcgaacag cgctttctgc attccgcccg
      901 gcgcgagcat gccggcgaag agcgccgtca tcatggcggt cagaaacgcg agttgcgtat
      961 cgaccagcat cgcgaccagc agcgacgcgg cggcgaaggg aatcgcgaag ttccagatca
     1021 tcgggtcatt gaacggcgcg tgcattctcg cagccacgct atcgccgaac gtgaagccga
     1081 ctttcatcaa cgctgtctga acgaggatcg ccgagccgac cagtgcaaac gctttctgtt
     1141 tactgatgct cagcgcgctt tcgcggcgat gctgcgcgaa cttccatgcc gcccagtaaa
     1201 cggcgaccac gacgatcaac aggccgaaga gatttgacca gcgtctgccc ggatgagtgg
     1261 tgttcttgat cgcgttgatt tgcgaaagga tcgccggcgt aaccgtgtcg ccctcgcgcg
     1321 ccaccacctg atttcgcttc aacgtgatca cgaccggctt aacctcgttg gccgcgtttt
     1381 cgcgcgcggc cgcggtcgca gcctgttcga gcacgacgtt gggacgaatc agggggcgca
     1441 gcgcggcggc gagggcagtc ttttcctgtg gcgtccagcc ttgcaggtag aggattcgcg
     1501 tgtcgagttt ttggcgcgcg cccgagagcg acgacatgct cgtccgcggc gccggaaaga
     1561 tcatctgcgt cgcctggttt cgctggtcga cgagcacgat gtcctgctgc atgcgattgg
     1621 cgtcgttgtc gtcgtagatg tagccggcgc tgatttcacg gacgattgcc gcgaggcgat
     1681 cgcgctccgt ttccgggaca gacttgtccg gcgcgatctg ttgcagcagc tcatcccagc
     1741 cggcgcgcag gctctcgact gacgtttccg cgcggctgga gtcgtaatta aaaaccggac
     1801 gcgttgcttc gcgcgcggtc actttcctgc gttctgtttc cccttcgtcg accgcggtga
     1861 tgtctgcggg cgccacgatg tcgcgcgcga gcacttcgcc ttctttgtaa acctcgctga
     1921 aaccgggaga gtaatcggag attaagagcg cggtggtgag tgttacgagg atcgcgcagc
     1981 cgatcagaaa gcgcgttcgc ggttcaagaa ccatgaacgg gcgaatcaca taggccagta
     2041 gcttatcgcg cgcttgacta aaaggagttt tgaaacgtgg ccgaagtccc attatgcgat
     2101 gcgcgacaaa gcggcggatt cgttgtcgtc cgctgctgat tctgcgccga ggttccgtgc
     2161 caacatgccg cccgcctttt cgagtaatgc tgtcaggctg gcgagtttga tcgccgagat
     2221 gactacgatc tcgctgttat cgatctgccg cgcctcccgg actgcggcgt cgacttcgtc
     2281 ggggtccagc aaatccgatt tattcaacgc caggatcgtg ggtatgtccg cgagtttcag
     2341 ttccgccagg attcgcttaa ccgactgcac ctgttgcacc caccgcgggt tcgaaacgtc
     2401 caccgcgtga atcaacagac tgctgtcgct gatctcctcg agcgtggcgc gaaaggccga
     2461 cagcaaatcc ggcggcagcg cgcgaataaa accgacagtg tcgttgatga tcacttcctg
     2521 ctcgcg
//
LOCUS       DASWTX010001330         2815 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_189898, whole genome shotgun sequence.
ACCESSION   DASWTX010001330 DASWTX010000000
VERSION     DASWTX010001330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2815)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2815)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2815
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189898"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            122..1660
                     /locus_tag="VGD38_20235"
     CDS             122..1660
                     /locus_tag="VGD38_20235"
                     /inference="COORDINATES: protein motif:HMM:NF013442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730425.1"
                     /translation="MSSTRSQYGTRFNTAPPDFDAQTGLPPGFMAFLEPLHRELTPRQ
                     QSLARQRIAVLAAAHEGQKPAYLPPSEATTADWTIPLPAWCADQRNQMTGPADDAELV
                     VKMLNSGAPGVMLDLEDSMANTWSNLTTGLENINAALKGELTYFDAKRNRTAGINESN
                     TVTFVRPRGLHLNQAGIFKDGLMSASLFDVAMVAYQADVDRLRHPLSFYIPKSESADE
                     ALWWRDLFRAIEDAKGLSRGYIKCMALVESHPIAYQMEEFIYNLRDHIVGLNLGRWDY
                     MASLIHFNLEDPKWVLPDRNTIPHDVPFFQSLRELLAETCHKHGILAIGGMTALYPSR
                     TDHELNEHALRVLAADKKNEANCLMDGAWTGHPDQNEIAVQQFPSPNQVNARKPNAEP
                     HPDLRPVPQGIGQITESGTRAAIRTVIRYRNGVLNGKGASLLDGYMEDLATDRIYRLM
                     IAQRTRHLPDVTPDLVHKLFDEELDRILHELPPNTDAPTIENYKTARQISEFLTWGGN
                     DENV"
     gene            1647..>2815
                     /gene="aceA"
                     /locus_tag="VGD38_20240"
     CDS             1647..>2815
                     /gene="aceA"
                     /locus_tag="VGD38_20240"
                     /EC_number="4.1.3.1"
                     /inference="COORDINATES: protein motif:HMM:NF011645.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004451 - isocitrate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase"
                     /protein_id="HEY0730426.1"
                     /translation="MKTSDHVALENEWANSDRWHGIKRGYTAEDVLKLRGSVEIKYTL
                     AERGSQRLWQLLHSEPYVHALGAMTGCQAVQQVQAGLKAIYLSGWQVAADANLAGQMY
                     PDQSLYPANSVPDVVRKINQALQRADQIDHVAGRNGIDWFAPIVADAEAGFGGNLNAF
                     ELMKAMIEAGAAAVHFEDQLASCKKCGHMGGKVLVPTQEFIQKLIAARLAADVLGVNT
                     ILVARTDADGAGLLTSDVDERDHAFLTGERTVEGFFTVKAGLDQAIARALAYAPYADI
                     VWCETSEPNLEDASRFAHAIHEQFPGKLLAYNCSPSFNWKKKLDDHTIAKFQKELGLM
                     GYKFQFITLAGFHALNLAMFELAQDYRDAGMSAYAKLQATEFAREADSDYRAVKH"
BASE COUNT          627 a          814 c          835 g          539 t
ORIGIN      
        1 ttcaaagcaa agacgccggg aacgccggta ccgtttatgt gagcataaac aacattgcgt
       61 tcacaattcc gactgcctta ttgcgcgggt atgtaacgca tgctaaacct ccggaaacat
      121 tatgtcgagc actcgttcac aatacggaac acgtttcaac actgctccac cggactttga
      181 cgcccaaacc ggcctgccgc cggggttcat ggcgtttctc gaaccgctgc atcgcgagct
      241 gacgccgcgg caacagtcgc tcgcgcggca acgcatcgcg gtactcgcgg ccgcacacga
      301 aggccagaag cccgcctacc tgccgccgtc cgaagcgaca accgccgact ggacgatccc
      361 gttaccagca tggtgcgcgg atcagcgcaa ccagatgacg ggtccggctg acgatgccga
      421 gcttgtcgtg aagatgctga actcaggcgc gcccggcgtg atgctcgacc tcgaagactc
      481 gatggccaac acgtggtcca acctgacgac cggcctcgag aacatcaacg ccgcacttaa
      541 aggcgagctc acgtacttcg acgcgaaacg caatcgcacc gcgggcatca acgaaagcaa
      601 caccgtcacg ttcgttcgtc cgcgcggttt acatctcaac caggcaggaa tcttcaaaga
      661 cggtctgatg tcggcgtcgt tgtttgacgt tgcgatggtt gcgtaccagg cggacgttga
      721 tcgcctgcgg catccgctga gtttttacat tccgaaatcg gagtcggctg acgaggcgtt
      781 gtggtggcgt gatctgtttc gcgcgatcga agacgcgaaa ggtttatcgc gcggttacat
      841 caagtgcatg gcgctggttg agtcgcatcc catcgcgtat cagatggaag agttcatcta
      901 caacctgcgc gatcacatcg tcggtttgaa tctcggccgc tgggattaca tggcgagttt
      961 gatccacttc aacctcgaag atccgaagtg ggtgctgccc gatcgaaaca cgattccaca
     1021 cgacgtgccg ttctttcaga gcctgcgtga gttactcgca gagacgtgtc acaagcacgg
     1081 catactcgcc atcggcggca tgacggcgct gtatcccagc cgcaccgatc acgaattgaa
     1141 cgaacacgcg ttacgcgtgc tcgccgcaga caagaagaac gaagcgaact gcctgatgga
     1201 cggcgcctgg accggacacc cggaccagaa cgagatcgcc gtgcagcagt ttccgtctcc
     1261 taatcaggtc aacgcgcgta agccaaacgc agaaccgcat cccgatctgc ggccggttcc
     1321 acaaggcatc ggacagatca ctgaaagcgg aacgcgcgca gcgatccgca cggtcattcg
     1381 ttatcgcaac ggcgtgctca acggcaaagg cgcgagtctg cttgacggct acatggaaga
     1441 cctcgctacc gatcgcatct atcgcctgat gatcgcgcaa cgcactcgcc atctccccga
     1501 cgttacaccc gatttggtcc ataagctgtt cgacgaagaa ctcgatcgca tcctgcacga
     1561 acttcccccg aacactgacg cgccgaccat cgagaactac aaaacagcgc gtcaaatcag
     1621 tgagtttcta acctggggag gaaacgatga aaacgtctga tcatgtcgca ctggaaaacg
     1681 aatgggccaa cagcgatcgc tggcacggaa tcaaacgcgg ctacacggcg gaagacgtgc
     1741 tgaagctgcg cggatccgtc gagatcaaat acacgctggc cgagcgtggc tcgcaacggc
     1801 tttggcaact gctgcacagc gaaccttacg ttcacgcgct tggcgccatg acgggctgcc
     1861 aggcggtgca acaggtgcag gccgggttga aagcgatcta tttgagcggg tggcaagtcg
     1921 cggctgatgc aaacctcgcg ggccaaatgt atcccgacca gagtttgtat ccggccaaca
     1981 gtgttccgga cgtggtgcgc aagattaatc aggcgttgca acgtgccgat cagatcgatc
     2041 acgttgcggg ccgcaacggc atcgactggt ttgcgcccat cgtcgccgat gcggaggcgg
     2101 gttttggcgg caacttgaat gcgtttgagt tgatgaaagc gatgatcgaa gcgggcgcgg
     2161 cggcggtgca ctttgaagat caactcgcgt cgtgcaagaa gtgcgggcac atgggcggca
     2221 aggtgctggt gccgacgcag gagtttattc agaaactgat cgcggcgcgg ttggcggctg
     2281 acgtgcttgg cgtgaacacg attctcgtcg cgcgcaccga tgctgatggc gctggtctgc
     2341 ttacgagcga cgttgacgaa cgcgatcatg cttttctcac cggggagcgg accgttgaag
     2401 gtttcttcac tgtgaaggcg gggttggacc aggcgatcgc gcgcgcgctt gcttacgcgc
     2461 cgtacgcgga catcgtttgg tgcgagactt ccgaaccgaa tctcgaagac gcgagccggt
     2521 ttgcgcacgc gatccacgag cagtttccgg gcaagctgct ggcgtacaac tgttcgccgt
     2581 cattcaactg gaagaagaag ctcgacgacc acacgatcgc gaagtttcag aaagagttgg
     2641 ggctgatggg ctacaagttt cagttcatca cgctcgcggg atttcatgcg ttgaacctcg
     2701 cgatgttcga gctcgcgcag gactatcgcg acgcgggcat gagcgcttat gcgaagcttc
     2761 aggcgacgga gtttgcacgc gaggccgata gcgattatcg cgcggtgaaa cacca
//
LOCUS       DASWTX010001331         2143 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_146491, whole genome shotgun sequence.
ACCESSION   DASWTX010001331 DASWTX010000000
VERSION     DASWTX010001331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146491"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            83..159
                     /locus_tag="VGD38_20245"
     tRNA            83..159
                     /locus_tag="VGD38_20245"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:117..119,aa:Arg,seq:ccg)
     gene            complement(179..1114)
                     /locus_tag="VGD38_20250"
     CDS             complement(179..1114)
                     /locus_tag="VGD38_20250"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF015692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribosylglycohydrolase family protein"
                     /protein_id="HEY0730427.1"
                     /translation="MELSLQDRVERARASLEGLSVGDAFGETFFVHPELVEGLIAERA
                     LASRTWNYTDDTLMAMSIFSVLRQQGHIHQPTLARSFAERYERDRGYGPAMHRLLSEI
                     RSGEDWEERAQSLFGGQGSFGNGAAMRVGPIGAFFAGDIDEVVEQATRSSVITHTHDE
                     AIAGAIAVAVASAVAVASARSSGSRTSAAPSRSEFLDLVLPHVPESEVRSKIRQGRDM
                     SDSASVEFAVSVLGNSVRVSAQDTVPFALWCAAKHLTNYEEALWLTVSGLGDRDTTCA
                     IVGGIVASYTGIEGIPKEWLSTRERLPAWPFTEPG"
     gene            1204..1620
                     /locus_tag="VGD38_20255"
     CDS             1204..1620
                     /locus_tag="VGD38_20255"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0730428.1"
                     /translation="MVPQTDQDHMDLADAQDTRRTVLVVDDFDDTRLLLRTWFERRGF
                     RVIEAENGVQAIDRAESETPDLIIMDVQMPQLDGLAATRRIRSLEALGTVPIVAVSAY
                     GAEQFRQLALEAGCDEYVSTPFEPATLEGIVRALVH"
     gene            1637..>2143
                     /locus_tag="VGD38_20260"
     CDS             1637..>2143
                     /locus_tag="VGD38_20260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730429.1"
                     /translation="MILTWIRPLLLAAFCLLPAQMISAQCTQKIATLPAAPELYGFRL
                     GMTRDEIKELVPQTQFGKTDHFGVAKTTINPSFDPKIDQKKFAGVRSISLDLLDDRLT
                     SLWIGFDDTYKIKTTDEFVKAVSQSLQVSGNWSSWRSRGQQLRCADFQLIVSTLAGGP
                     SLRLLDFGA"
BASE COUNT          452 a          649 c          582 g          460 t
ORIGIN      
        1 cgttattgac gaccggtaca aaaaggggta caaaaagggg tacatttctt ggagacctct
       61 ttgaaacctg cgttttattt aggcccgcgt agctcagtgg attagagcgt tcgcctccgg
      121 agcgaaaggt cgcaggttcg acccctgccg cgggtaccaa ttttgctcga ccctcccgtt
      181 aaccaggttc ggtaaacggc caagccggta ggcgttccct tgtgcttaac cattccttcg
      241 ggatgccttc gatgccggtg taggaggcca ctatgccgcc gacgattgcg caggtcgtgt
      301 cgcgatcgcc caggccgctg acggtgagcc atagggcttc ttcatagttt gttaggtgct
      361 tcgctgcaca ccataaggcg aaagggactg tgtcctgggc ggagactcgc acactgttgc
      421 caagaaccga aaccgcaaat tcaacggaag cactgtccga catgtctctc ccctgccgaa
      481 tcttgctgcg cacttcgctc tccggaacat gaggtaggac cagatcgaga aactctgagc
      541 gactgggcgc tgcagacgtc cgtgatccag atgaacgggc ggacgccact gctacagcgg
      601 acgcgactgc aaccgcaata gctccggcga tcgcttcgtc atgtgtatgc gtgatgacgg
      661 acgatcgagt cgcctgctcg acgacctcat cgatatcgcc ggcgaagaat gcgccgattg
      721 gcccaacacg cattgccgca ccgttaccaa acgaaccctg cccgccaaac aaactctgcg
      781 ctctttcctc ccagtcttca ccactcctga tctccgataa cagtcgatgc atcgccggac
      841 catacccgcg gtcgcgctcg tagcgttcgg caaagctgcg cgcgagtgtt ggttgatgaa
      901 tgtgcccctg ctgccgcagt accgaaaaga tcgacatcgc catcagcgtg tcgtctgtgt
      961 agttccacgt tcgactagct aacgcgcgtt ccgcaatcaa tccttcaacc agctcaggat
     1021 gaacaaaaaa cgtttcgccg aatgcatcgc cgacagatag cccttcaaga ctcgctcttg
     1081 cgcgttcaac ccgatcttgt aatgaaagtt ccatttctaa agaaccccgc ccacattatt
     1141 gcgcacgatc aactataggg ccattcacga aacgatgatt ttttgctacg cttgggttcc
     1201 ccgatggtcc cccaaacaga ccaggaccac atggaccttg ccgacgccca ggatacccga
     1261 cgcacagttc tcgttgtcga cgacttcgac gatacccgtc tgctcttgcg aacgtggttc
     1321 gaaaggcgcg ggtttcgggt tattgaggcg gagaatggtg tgcaggctat cgaccgcgcg
     1381 gaaagtgaga cgccggacct gattattatg gacgtgcaaa tgccgcagct cgatggcctc
     1441 gcagcgacga gaagaatccg cagcctcgag gcgctcggga ccgtgccgat cgtggcggtc
     1501 tcggcgtatg gcgccgagca gtttcgccaa ctcgcccttg aagcggggtg cgacgagtac
     1561 gtttccacgc ctttcgagcc ggcgacgctc gaaggcattg ttcgcgcact cgtgcattaa
     1621 ctgtataatc tcgcgcatga ttctcacctg gattcgcccg ctgctgctgg ccgcgttttg
     1681 cttgctacca gcccaaatga tctcagcgca gtgcacgcag aagatcgcca cgctgcccgc
     1741 ggcgcccgag ctctacggtt ttcgcctcgg catgacgcgc gatgaaatca aggaactcgt
     1801 gccgcaaacc caattcggga aaaccgatca cttcggcgtc gcgaagacca cgatcaatcc
     1861 gagcttcgat cccaagatcg atcagaagaa gtttgcaggc gtgcgcagca tctcgctcga
     1921 cctgctcgac gatcgtctga cgtctctctg gatcggtttc gacgacacct acaaaatcaa
     1981 aaccactgac gagttcgtga aagcggtctc gcagtcgctg caggtttccg gtaactggtc
     2041 gtcgtggaga tcgcgcggtc aacagttgcg ctgcgctgat ttccagttga tcgtcagcac
     2101 gctcgctggt ggtccaagtc tgcgtttgct cgacttcggc gcc
//
LOCUS       DASWTX010001332         5855 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_280073, whole genome shotgun sequence.
ACCESSION   DASWTX010001332 DASWTX010000000
VERSION     DASWTX010001332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5855)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5855)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5855
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280073"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..477
                     /locus_tag="VGD38_20265"
     CDS             <1..477
                     /locus_tag="VGD38_20265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730430.1"
                     /translation="QARKIASKFVRGSLGALELIETDAGPAIVAVNNQRRAGTSSFVL
                     LEQRGGKYVLSAQGRLDSLGFTHANWSAELLDADEDGYQELIFSGKDPSESRNLRRLI
                     LFVPNEKRTYSMQMTGETTASGTPRIQWLSNATGTDAAPYRTALRQKARAIVSKKR"
     gene            569..2005
                     /locus_tag="VGD38_20270"
     CDS             569..2005
                     /locus_tag="VGD38_20270"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY0730431.1"
                     /translation="MKRTFLVSLLLLSLLTPSTFLVAAVPQRKTDRPSAPAAAATAPA
                     RLPEAKLISHVLPNGLEVIILEDHSIPLVTIELAVKNGSYTEPPELNGLSHLYEHMFF
                     KQNRAIANSEDYLRRIGQMGIAYNGTTREEVVDYYFTTTSPNIRTAMQFMKDATRYPS
                     FDEREFVREKEVVIGEIDRNESNPFYYLTKEMNSRLFLKYPSRKNPLGNRETVGGATT
                     AMMRLIQQRYYVPNNSALVITGDVNPTEVMKMAQEFYGDWPKREKDPFVEFPLVEHPP
                     LPKSEGVVVLQPIQNVILAVGWHGPSIGKDNPATYAADVFSFILRQPNSRFQRNLVDT
                     GLVTGVDLSYYTQRNVGPIMMIAQTTPDKAQAAIKALYNEVAHFNDKDYYTDEELESA
                     KALLEADDLYSREKLSDYTHTLSFWWASTGLEYFRGYLPRLRATSRADISRYITTYIQ
                     GKPHVGLALMSTEAQGQIKIQPEELIGK"
     gene            2002..3396
                     /locus_tag="VGD38_20275"
     CDS             2002..3396
                     /locus_tag="VGD38_20275"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY0730432.1"
                     /translation="MREQIKRIFSAWVLITVLVFGASDASHAKQQGKGQPQETVRSVV
                     AKQASLVSEFDVNGLKVLLKRREGSLTVAAGLFIRGGSTNINAQNAGIESLMLSAATE
                     ASANFPRARMRTELARMGTVIGSSSNNDYSVLSLGTTRMHFDQSWKMFTDVALRPSFT
                     KEDVALVQKRLIVSLSDDTDSPDVYLQRLQERVAYAGHPYLNSTTGTPESVAKLTPED
                     LRLFHTKLMETSRLLLVIVGDLNPAEVQKLVADSLGKLPRGTYKVEEVPALAFNKSTV
                     EVTPRELPTNYIQGLFTAPSLTSPDIYAMRVASSMLRDRVFEEVRVRRNLSYAPDAFL
                     RTQAANVGGLYVTAVDANQSIRVMLNEIARLQNQPVSNDDITAVIAHYLTSYYLGQET
                     NAAQAGELAQYELIGGGWRNSVNFLEKLSAVTPADIQRVAQKYMRNIRFVVLGNPQSV
                     DPTVFTGDPGKAAG"
     gene            complement(3416..4543)
                     /locus_tag="VGD38_20280"
     CDS             complement(3416..4543)
                     /locus_tag="VGD38_20280"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEY0730433.1"
                     /translation="MNLRSFPRLVPLALILLAASFVHAQESLPALVKRVKPAVVAIAT
                     YDSSGEALMTGSGFFLNPGQVVTNLHVVRGAARAEIKTLDGKGKVYQVNGALAVDEEG
                     DLALLSVDMPLQPARVSELARELPDEGEPIFVIGNPLKLEGSVSDGIVSAVREVPNSY
                     RIIQITAPISHGNSGSPVFNLKGQVLGVVTVKVTNGQNINLAIAAARVGQLRAGKLQP
                     LSDITPKGKGDVAESSYRNGLDSLWLGNYDSAVGYFENAVNKNPKRADAWVQVGYCKV
                     KQGKSQEAIRAYQQALQLKPEDADIHNKLGDAYYYAGRLREAIEAYETAKDLQPDNAE
                     TFYNLAIAYYESGNQSMAAAEARILQRLDPKLYERYLRETM"
     gene            complement(4791..5723)
                     /locus_tag="VGD38_20285"
     CDS             complement(4791..5723)
                     /locus_tag="VGD38_20285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730434.1"
                     /translation="MSKHVSSGLAAVILTLTLSALAFAQTTTTTVTKTVQNPDGSYTI
                     IEYPAKKEVTLTLNPVAIQGAQGVATILRDDDGTRIKLNLTNVPADVTAMTVYAVDDT
                     GTVTALGPVAISNGVGTLTTTTPLNRFMLIASPEGTLTAYDPNTKVFFRSAVPEGYAV
                     IPLRQNPSGERVAAVASPTTTVAGTYTAPLLGIPNLKSGDDTKIKVDFTGALTGARAN
                     VFITPHKDKPTEVKMRFHDLKEAPAGQKYVVWAVGADGTYQKLGEIVNTGGRNEAEFK
                     TETALADFGLLLTMESAIGASPAGPAVATIHIVP"
BASE COUNT         1273 a         1643 c         1677 g         1262 t
ORIGIN      
        1 caggcgcgca agatcgcctc gaagtttgtt cgtggctcac tcggcgctct ggaactaatc
       61 gaaactgacg ccggtccagc gatcgtcgcc gtcaacaatc aacggcgagc cggcacgagc
      121 agttttgtgc tgctcgaaca acgtggcggg aagtacgtcc tcagcgcgca gggacgcctc
      181 gacagcctcg gattcactca tgcgaactgg agcgctgaac tactcgacgc cgacgaagac
      241 ggctatcagg agttgatatt cagcggcaaa gacccgagcg aaagccgcaa tttgcgacgt
      301 ttgatcctgt tcgtccccaa cgaaaaacgc acctactcga tgcagatgac cggagagact
      361 accgcatcag gtacgccccg aattcagtgg ttatcaaacg cgaccgggac cgatgccgcc
      421 ccctaccgga ctgccctgcg acaaaaagca cgagcaatcg taagcaaaaa acggtaacac
      481 agataaaaga caaaaactgt gtattccgtg taatctgtgg ctagcttagc tgcatctatt
      541 ggtttacctt gtcgcaatgg agctatacgt gaaacgaacc ttcctggtat cgctacttct
      601 tttatctcta ttaacgcctt caacttttct cgtcgcagcg gtcccgcaac gtaagacgga
      661 ccggccgtcc gcgccggccg cggcggcaac cgcgccagcg cgactgcccg aagccaaact
      721 gatcagtcac gtgctgccga acggcttgga ggtcatcatt ctcgaagacc actccatccc
      781 gctggtcacg atcgagttgg cggtgaagaa cggctcgtac accgagccgc ccgagttgaa
      841 cggcttgtcg catctttacg agcacatgtt cttcaaacag aaccgcgcga tcgccaattc
      901 tgaagactat ctacgccgta tcggacagat gggcattgct tacaacggca cgacgcgcga
      961 ggaagtggtc gattactact tcaccaccac cagcccgaac atccgcaccg cgatgcagtt
     1021 catgaaagac gcgacgcgct acccatcgtt tgacgagcgc gagtttgtgc gtgaaaagga
     1081 agtggtgatt ggcgagatcg atcgcaacga gtcgaatcct ttttactatc tcaccaaaga
     1141 gatgaacagc cggctgttcc tcaagtatcc gagccggaaa aacccgttgg gaaaccgaga
     1201 gacagtcggc ggcgcgacaa cggccatgat gcggttgatc cagcagcgtt actacgtgcc
     1261 gaataattca gcgctcgtga tcacgggcga cgtcaatccg acggaagtga tgaagatggc
     1321 gcaggagttc tatggcgact ggcccaagcg cgaaaaggat ccgtttgttg agtttccgct
     1381 tgtcgaacat ccgccgctgc cgaagagcga aggcgtcgtg gtgttgcagc cgattcagaa
     1441 cgtgatcctg gccgtcggct ggcatggccc atcgatcggc aaagacaatc cggcgacgta
     1501 cgctgccgac gttttttctt tcatcctgcg gcaaccgaat tcgcggtttc agcgaaacct
     1561 cgtcgacacc gggctcgtga ccggagttga tttgagttac tacacgcagc gcaatgttgg
     1621 accaatcatg atgatcgcgc agacgactcc cgacaaagcg caggcagcga tcaaggcgct
     1681 gtacaacgaa gtcgcgcact tcaacgacaa ggactactac actgacgaag agctcgaaag
     1741 cgcgaaggct ttgctcgaag ccgacgatct ttattcacgt gaaaaactga gcgactacac
     1801 gcacacgttg agtttctggt gggcgtcgac cgggctcgag tatttccgcg gttacctgcc
     1861 gcgtctgcgc gcaacgtcgc gggccgacat cagccgttac atcacaactt atatccaggg
     1921 caagccgcac gtcggtttgg ctttaatgtc gaccgaggcg cagggccaga tcaaaattca
     1981 accggaagag ctaataggta aatgagagaa cagatcaaga gaatattcag cgcgtgggtt
     2041 ttaatcaccg ttctggtgtt tggtgcgagc gatgcttcgc acgcgaaaca acagggcaaa
     2101 ggccagccgc aggagactgt gcgcagcgtc gtcgcgaaac aggcgtcgct ggtcagcgag
     2161 tttgatgtca acggtctgaa ggttttgctg aaacgccgcg agggcagttt gacggtcgcg
     2221 gcgggacttt ttattcgcgg cggctcgacg aacatcaacg cgcaaaacgc gggaatcgaa
     2281 tcgctgatgc tcagcgcggc gaccgaagca agcgcgaact tcccgcgcgc gcggatgcgc
     2341 accgaactgg cgcgcatggg caccgtcatt ggcagcagct ccaacaacga ctattcagtg
     2401 ctttcgctcg gcaccacgcg catgcacttc gatcagtcgt ggaagatgtt tactgacgtc
     2461 gcactgcggc cgtcgtttac aaaagaagac gtggcgctcg tgcagaagcg gctgatcgtt
     2521 tcgctgagcg acgacactga cagtccggat gtttaccttc aaaggttaca ggagcgtgtc
     2581 gcttatgccg gccatccgta cctgaacagc accacgggca cgccggagtc ggttgcgaaa
     2641 ctcacgccgg aagatctgcg tctgtttcac acgaagctga tggaaacgtc gcgcttgttg
     2701 ctcgtgatcg tgggcgattt gaacccggct gaagtgcaaa agctggtcgc ggacagtctt
     2761 ggcaagttgc cgcgtggcac ttacaaagtc gaagaggtgc cggcgctagc tttcaacaag
     2821 tcgaccgttg aagtcacgcc gcgcgagctt ccgacgaact acattcaagg cttgttcacc
     2881 gcgccgtcgt tgacgtcgcc cgacatttac gcgatgcgcg tggcgagctc gatgttgcgc
     2941 gatcgtgttt ttgaggaagt tcgtgtgcgg cgaaacctgt cgtatgcgcc ggacgcgttc
     3001 ttgcgaacgc aggctgcaaa cgtcggcggg ctttacgtga ctgcggtcga tgcgaatcaa
     3061 tcgattcgcg tgatgttgaa tgagatcgcg cgtttgcaga accaacccgt tagcaacgac
     3121 gacataaccg ccgtgatcgc gcactactta acctcttact acctgggcca ggaaacgaat
     3181 gcggcgcagg ctggtgagtt ggcgcagtat gaattgattg gcggcggctg gcgtaactcg
     3241 gtgaactttc tcgagaagct gagcgcggtt actccggccg acattcagcg cgtggcgcag
     3301 aaatacatgc ggaacattcg cttcgttgtg ctgggaaatc cgcagagcgt ggacccgacg
     3361 gtgttcactg gcgacccagg caaagccgcc ggttagaatc cgtcaaatct gtggcctaca
     3421 tcgtctcgcg caagtacctc tcgtagagct tcggatcgag acgctgcaat atgcgagctt
     3481 cggcggcagc cattgattgg ttgccgcttt cgtaataagc aatcgcgagg ttgtagaacg
     3541 tctccgcgtt gtcaggctgc aagtccttgg ccgtctcgta cgcctcgatc gcctcacgca
     3601 atcgacccgc atagtaataa gcatcaccga gcttgttgtg aatatcggcg tcttcgggct
     3661 tgagttgcag cgcctgctgg taggcgcgaa tcgcttcctg gctcttgccc tgtttcactt
     3721 tgcagtagcc gacctgcacc cacgcatccg cgcgcttcgg gttcttgttg acggcgtttt
     3781 cgaaatagcc gacagcgctg tcgtagttac cgagccacag cgaatccaga ccgttgcgat
     3841 atgaggattc cgcaacgtca cctttgcctt taggggtgat gtccgatagt ggttgcagtt
     3901 tcccggcgcg caactggcca acgcgagcgg cggcgattgc gagattgatg ttttgaccgt
     3961 tcgtgacttt aacggtgacc acgccgagaa cctgaccttt caaattgaaa accggactgc
     4021 cgctgttgcc gtgggagatc ggcgcggtaa tctggatgat gcgatagctg tttggcactt
     4081 cacgaaccgc cgacacgatg ccgtcgctaa cggagccttc gagtttcagc ggattgccga
     4141 tcacgaagat cggttcgcct tcgtccggca gttcgcgcgc gagctcgctc acacgcgccg
     4201 gttgcagcgg catgtcgaca ctcagcagcg cgaggtcgcc ctcttcgtcg acggcgagcg
     4261 cgccgttgac ctgataaacc ttgcctttac cgtcgagagt cttgatctcc gcgcgcgccg
     4321 cgccgcgaac cacgtgcagg ttcgtgacca cctgtcccgg attgagaaag aaaccactgc
     4381 cggtcatcaa cgcttcgcca ctcgaatcgt aagtcgcgat cgcgacgacc gcgggcttca
     4441 ctcgtttgac gagcgcaggc agactttcct gagcgtgaac aaaggacgcg gctagaagga
     4501 tcagtgccag gggaaccaaa cgggggaagc ttctcaaatt catgtcgtca acactcaaaa
     4561 agggagactt cggtccgtga tgggaaaatc gacggccagg ggatctcgct gtcgtgaaaa
     4621 gagtcgaggc tcggttgaac ctgtcgggag acctgaagcg cccgtgtgca cttcagtgcc
     4681 gacatattaa cgcaagattc tcgtttgtga aacttctttg tgagatttat gacacagaaa
     4741 aaggccgcgc cttgcggcac ggccccaaat taccggcgat tgttcgccag ttacggaacg
     4801 atgtgaatcg tcgcgaccgc cggtcccgcc ggcgaggcgc caattgctga ctccatcgtt
     4861 aggagtagtc caaagtccgc caatgcggtt tcagtcttga attcggcctc gttgcggcct
     4921 ccggtgttca cgatctcacc gagtttctga tacgtcccat ccgctccgac ggcccacacg
     4981 acatatttct ggcccgcggg cgcttccttc agatcgtgga aacgcatttt cacttcagtc
     5041 ggtttgtctt tgtgcggcgt gatgaacacg ttcgcacgcg caccggtcaa cgcaccagtg
     5101 aagtcgactt tgatttttgt atcgtcgcca ctcttgagat tcggaatgcc cagcagcggc
     5161 gcagtgtacg ttccggccac tgtcgtcgtc ggtgaagcca cagccgcgac tctctcacct
     5221 gatggattct gtcgcagcgg gattacggcg taaccctctg gaacggcgct gcggaagaag
     5281 accttcgtgt tcgggtcgta ggccgtcagc gtgccttccg gcgaagcaat caacatgaac
     5341 cggttcaacg gcgtggttgt cgtcagcgtg ccgacgccat tgctgatcgc gaccggaccg
     5401 agcgcggtta ccgtacccgt gtcatcaact gcatataccg tcatcgcagt cacgtccgcc
     5461 ggtacgttgg tcaaattgag tttgatcctg gtgccatcgt cgtcgcgcaa aatcgtggcg
     5521 acgccctgag caccctggat agcgacagga ttcagcgtca gtgttacttc tttcttcgct
     5581 ggatattcga ttatcgtgta gcttccgtcg ggattctgga ctgtcttggt aacggttgta
     5641 gtagttgttt gtgcgaatgc gagtgcggac agcgttagag tcagaatcac ggcagccaaa
     5701 ccactcgaaa cgtgcttgct catgtagttg tacctccctt gtgtctaatt aatcgcgatt
     5761 aattgtcggg ggaagtatgt cggggagacg cacacaggcg tatcaactta tgttgcggca
     5821 acacttatgc cgcctttgtt ttgaggattt cagcg
//
LOCUS       DASWTX010001333         1965 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_40925, whole genome shotgun sequence.
ACCESSION   DASWTX010001333 DASWTX010000000
VERSION     DASWTX010001333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1965
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40925"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(26..>1965)
                     /locus_tag="VGD38_20290"
     CDS             complement(26..>1965)
                     /locus_tag="VGD38_20290"
                     /inference="COORDINATES: protein motif:HMM:NF014026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HEY0730435.1"
                     /translation="EKVAQMMNATPAIERLGIPPHDYWNEALHGVARSGTATVFPQAI
                     GLAATWNTKLMHDVADVISTEARAKHHEYARNNQFGRYQGLTMWSPNINIFRDPRWGR
                     GQETYGEDPYLTGQMGVQFVRGLQGNDPRYFKVIATPKHYAVHSGPEPERHEFDAIAN
                     ERDLRETYLPAFRATILDGKAYSVMCAYNRTNGEPCCASKRLMQDILRDEWGFDGFVV
                     SDCGSIYDIWKFHKVVPTEMEASVLGVKAGTDLTCGSEYKTLIEAVKQKAITEAELDT
                     SVRRLLTAKFRLGMFDPPEMVAYTRIPISQNDTPEHRQLALQTARKSIVLLKNANRAL
                     PLKKDLKSIAVIGPNADLPEVLWGNYNGNASVLTTPLAGIRNAVSKNTKVTYAPGSTL
                     AGEAIVSVPASALTVDGRQPGVKAEFFNNQELRGPAVKTRIDPRIDFDWGRYHPTPEL
                     TGNNFSIRWTGKLTPPESGTYKLGFTADDGARLYLDGKLLVEEWASNPNNTNPNKTVT
                     KEITLEGGRSYDLRMEYYQNVRENIAKLVWSYPRLSERMIEEAVKAARESEVSVLVLG
                     ISARLEGEEMNVPLEGFRGGDRTEIFLPKTQETLLKAVMATGKPVVVVLLSGSALAVN
                     WANDNVPAILAAWYPGGEGRA"
BASE COUNT          380 a          620 c          520 g          445 t
ORIGIN      
        1 gagcacgaga acgctgacct ctgactcacg cgcggccttc accgcccgga taccacgccg
       61 ccagaatcgc aggcacatta tcgttggccc agttcactgc caacgcgctg ccgctgagta
      121 aaacgacaac caccggcttg cccgtcgcca tcaccgcttt caacagcgtc tcttgcgtct
      181 tcggcaaaaa gatctccgtt cgatcgccac cgcggaaacc ctcaagcggc acgttcatct
      241 cttcgccctc gagccgcgct gaaataccga gcacgagaac gctgacctct gactcacgcg
      301 cggccttcac cgcctcttca atcatccgtt cagacaaccg cggatacgac caaacgagtt
      361 tagcgatgtt ctcgcgaacg ttctggtagt actccatccg cagatcgtaa ctacggccac
      421 cttcgagagt gatctcctta gtaactgtct tgtttggatt ggtgttgttt gggttactcg
      481 cccactcttc aaccaacagt tttccgtcaa ggtagagccg cgcgccgtcg tccgcggtga
      541 atccgagttt gtaggttcct gattcaggcg gcgtgagctt gccggtccag cgaatcgaga
      601 agttgtttcc cgttaactcc ggcgtcggat ggtaacgtcc ccaatcgaaa tcgatgcgcg
      661 gatcgatgcg tgtcttcacc gctggaccac gcagctcctg gttgttgaaa aactccgcct
      721 tcactcccgg ctgtcgcccg tcaaccgtca acgccgacgc cggaaccgac acgatcgctt
      781 cgcccgcgag tgtcgatccg ggcgcgtaag tgactttcgt atttttcgag actgcgtttc
      841 ggattcccgc gagcggcgta gtcaaaaccg atgcattacc gttgtagtta ccccacaaca
      901 cctccggcaa gtcggcgttt ggaccaatca ccgcgatgct cttcaggtcc ttcttcaacg
      961 gcaacgcgcg attggcattc ttcagcagca cgatcgactt gcgcgcggtc tgcaacgcca
     1021 actggcgatg ctcgggcgtg tcgttctgcg aaatcggaat gcgcgtgtaa gcaaccatct
     1081 cgggaggatc gaacatgccg agccgaaact tcgccgtcag cagtcgcctc accgacgtgt
     1141 cgagctcagc ctcggtaatc gctttctgct tcaccgcttc aatcagcgtt ttgtactcgc
     1201 tgccacacgt cagatccgtg cccgctttaa cgccgagcac cgaggcttcc atttcggttg
     1261 gaacaacctt gtgaaatttc cagatgtcgt agatcgaacc gcagtcagag accacgaaac
     1321 cgtcgaagcc ccactcgtcg cgcaggatgt cctgcatcaa cctcttactc gcgcagcatg
     1381 gttcgccgtt cgttcggttg taggcgcaca tgaccgaata cgctttgccg tcgaggatcg
     1441 tagcgcggaa cgcaggcaga tatgtttcgc gtagatcccg ctcgttggcg atcgcgtcga
     1501 actcgtgacg ttcgggttcc ggaccactgt gcacggcgta gtgtttcggc gtggcgatca
     1561 ccttgaagta acgcggatcg ttgccttgca atccgcgcac gaattgcacg cccatctggc
     1621 cggtcaaata cggatcttcg ccgtaagttt cctgcccgcg gccccaacgc ggatcgcgaa
     1681 agatgttgat gttggggctc cacatcgtca gcccctggta acggccgaac tgattgttgc
     1741 gcgcatattc gtgatgcttc gcgcgcgcct ctgtcgagat aacgtcggcg acgtcgtgca
     1801 tcagtttcgt gttccaggtc gcagccaaac cgatggcttg cggaaacacc gtcgccgtcc
     1861 cggaccgtgc aacaccgtgc aaagcctcgt tccagtagtc gtgtggtgga atgccgagac
     1921 gctcgattgc gggcgttgca ttcatcatct gcgcgacttt ttctt
//
LOCUS       DASWTX010001334         2310 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_429077, whole genome shotgun sequence.
ACCESSION   DASWTX010001334 DASWTX010000000
VERSION     DASWTX010001334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2310)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2310
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_429077"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..573)
                     /locus_tag="VGD38_20295"
     CDS             complement(<1..573)
                     /locus_tag="VGD38_20295"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0730436.1"
                     /translation="MDSILIVDDERGIRDTLRAVMEDEGFVADAVASGEDCLKALGKR
                     AYGCILLDVWLPGIDGLETLKQLRAAGSEAAVVIISGHGNIETAVRATKLGAFDFIEK
                     PLSIEKTVLTVRNALRQQRLEMMNANMAAALAREYTMVGESVAMRALRKQISVVAPTD
                     GRVLIYGESGTGKELVARAIHAEARRAAAPL"
     gene            complement(580..>2310)
                     /locus_tag="VGD38_20300"
     CDS             complement(580..>2310)
                     /locus_tag="VGD38_20300"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0730437.1"
                     /translation="QTVEQRQATIDQIVASGQLIGVEIVANDGAVVAKSRAELSGEDA
                     QKLDQLFSEARSYRGPTGANLADGNEFDVLGVQLNGSESLIIAPQKRATTNITDVVTG
                     SERDYQDLVRKQRRVRLLGLSTLGLMTLILLFASSWIAIYLARGIATPIKALAEASNE
                     VARGNLSHRVTTVADDELALLAESFNQMTTQLEENRRSIEAGAAELRDKNLALRERRN
                     YIETILQSLTTGVVSLDENDCITTSNAAASRMLGLADKPGENPKLSALIANEDWIVVD
                     RLLKRARRSGNATEQTQLEGGANGAGALPVAMTATALRGSISPRRGVVLVIEDLSELL
                     AAQRAAAWSEVARRMAHEIKNPLTPIQLSAERIAKSYARIAEHGNGSANGNGADEKRV
                     AAVISECTQTITREVAGLKAMVDEFSRFARLPATRLESASLNEVISQAVGLYKDRLDG
                     ISINMNLDSDLPLTTLDGEQIKRVFVNLIDNAIDSLSAAPEKRITITTSHDAERSLVR
                     AEVADTGRGIEAGDFRRLFQPYFSKRDSGTGLGLAIVQQIILEHGGRIRAEKNEPRGA
                     RFLIELPTAA"
BASE COUNT          397 a          710 c          703 g          500 t
ORIGIN      
        1 caacggcgcg gccgcgcgcc gtgcctccgc atgaatcgca cgcgcaacca gttcctttcc
       61 cgttcccgac tcgccgtaga tcaaaacacg cccgtcagtc ggcgcaacga ccgagatctg
      121 tttgcgcaac gcccgcatcg cgacggactc gccgaccatc gtgtactcgc gcgcgagtgc
      181 ggcggccatg ttggcgttca tcatctcgag ccgctgttgg cgcagcgcgt tgcgcacggt
      241 caaaacggtc ttctcgatcg agagcggctt ttcgatgaaa tcaaacgcgc cgagtttcgt
      301 tgcgcgcacg gcggtttcga tgttgccgtg accggagata atcacgaccg cggcttccga
      361 accagcggcg cgcaactgtt tcaacgtctc gaggccgtcg attccgggaa gccaaacgtc
      421 gagcaggatg cagccgtaag cgcgtttgcc gagtgctttc agacagtctt caccgctggc
      481 gacggcgtcg gcaacgaagc cttcgtcttc catcacggcg cgcaacgtgt cgcgaatgcc
      541 gcgttcgtcg tcaacgatga gaatcgaatc catgtcctct taagcagccg tcgggagttc
      601 gatcaaaaac ctcgcgccgc gcggttcgtt cttttcggcg cggatgcgtc caccgtgttc
      661 gagaattatt tgctgcacga tcgcgagacc caaaccggtg ccgctgtcgc gcttggagaa
      721 gtatggctga aacagccggc gaaagtctcc cgcttcgatt ccccgcccgg tgtctgccac
      781 ttccgcgcgc acgagactgc gctcggcgtc gtgactggtc gtgattgtaa ttcgcttttc
      841 cggcgcggct gacaatgagt cgatcgcgtt gtcgatcaag ttcacaaaga cgcgtttgat
      901 ctgttcgccg tcaagcgttg ttaaaggcag atccgaatcg agattcatgt tgatgctgat
      961 gccgtcgaga cgatctttgt acagcccaac ggcctggctg atcacttcgt tcagagacgc
     1021 ggattcgagc cgggtcgccg gcagacgcgc gaagcgagag aactcgtcga ccatggcttt
     1081 caaaccggcg acttcgcgcg tgatcgtctg cgtgcattcg ctgatcacgg ccgcgacgcg
     1141 tttttcatca gcgccgttgc cgttcgcact gccgttgccg tgctcggcaa tgcgcgcgta
     1201 gctcttggcg atcctttcgg cggaaagttg aatcggcgtt aacgggtttt tgatctcgtg
     1261 ggccatgcgc cgcgcgactt cactccacgc cgccgcgcgc tgtgcggcca gtaattcgga
     1321 aaggtcttcg atcacgagca cgacgccgcg tcgcggactg atcgaaccgc gcaaagccgt
     1381 ggccgtcatc gcgaccggca gcgcgcccgc gccgtttgcc ccgccttcga gttgcgtttg
     1441 ctcggtcgca tttccggaac ggcgcgcgcg cttcaacagt cgatcgacaa cgatccaatc
     1501 ctcgttcgcg atcaacgcgc tcaatttggg gttctcgcca ggtttgtcgg cgagaccgag
     1561 catgcgcgac gccgcggcgt tcgaggtcgt gatgcaatcg ttctcgtcga gcgagacgac
     1621 gcccgtcgtc aacgactgca ggatcgtttc gatgtagttg cgtctttcgc gcaacgcgag
     1681 atttttgtcg cgcaactccg ccgcgccggc ttcgatgctg cgccggtttt cctcgagttg
     1741 cgtcgtcatc tggttgaacg actctgcgag caaggctagt tcatcgtcgg cgacagtcgt
     1801 gacgcgatgt gaaagattcc cgcgcgcgac ttcgttggac gcttcggcga gtgctttgat
     1861 cggagtggcg atgccgcgcg cgaggtaaat cgcgatccag ctcgacgcga acagcaggat
     1921 caacgtcatc aagccgagtg ttgagagtcc gagcaagcga acgcgccgct gtttgcgcac
     1981 cagatcctgg tagtcgcgtt cggagccggt gacaacgtcg gtgatgttgg tcgtggcgcg
     2041 tttttgcggc gcgatgatga gcgattcaga tccgtttaac tgcacgccga gaacgtcgaa
     2101 ttcgttgccg tccgcgaggt tcgcgccggt tgggccacga tagctgcgcg cttcgctgaa
     2161 caactggtcc agtttttggg cgtcttcgcc ggaaagctcg gcgcggctct tggccacgac
     2221 cgctccatcg ttcgccacga tctcgacgcc gataagctgc ccggacgcga cgatttgatc
     2281 gatcgtcgcc tggcgctgtt cgaccgtttg
//
LOCUS       DASWTX010001335         3323 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_16651, whole genome shotgun sequence.
ACCESSION   DASWTX010001335 DASWTX010000000
VERSION     DASWTX010001335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3323)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3323)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3323
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16651"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..199
                     /locus_tag="VGD38_20305"
     CDS             <1..199
                     /locus_tag="VGD38_20305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730438.1"
                     /translation="ARLVKAADVIDLLVEALALERAGGRGLDEFWEVAENPQLQLEGP
                     AKQIVDDLLDSLLKARARCLT"
     gene            187..612
                     /locus_tag="VGD38_20310"
     CDS             187..612
                     /locus_tag="VGD38_20310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730439.1"
                     /translation="MPDLTLSVSWSSILIGAALFVASFVINLAIVSIILVKLPADHFS
                     KSNRKKFAEDRHPVLRVLGVIGKNIAGVLLVILGIVLSLPGVPGQGLLTILLGIMLLD
                     FPGKDRLEQKLLSRPSIVNAINGLRGRFGKPPLELNGSN"
     gene            708..1721
                     /locus_tag="VGD38_20315"
     CDS             708..1721
                     /locus_tag="VGD38_20315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730440.1"
                     /translation="MLLPVFVALIVVLNSGCGLFGAKRKITVPQLLTPLADANKDRLI
                     QEVNRLSTVRSIHGKVDIQFEDTSFASSGIADQYRLVDGTITLQRPGKIYLVIQFTFV
                     DIAQMASDGEHFSVAVLKGDEKYKRFVKGTNSAVYAKLDTEANHTTSQNEKQKTEKQT
                     VSALSNLRPQHLTDAFMIRPIDANSGSVYVQSQFFQEEADSRRQAKKGDRVMRGYYLL
                     EEFSQPQGNDAKLTRRFWFDRVSGIRLARVQTYDDTGALITDVSYSMERALGSGPTAS
                     LPSRIEITRPQDQYKLNITYQDAASVELNREYNPKAFVLENRWQLPEVDLDAQNKKVT
                     ANQ"
     gene            1725..2417
                     /locus_tag="VGD38_20320"
     CDS             1725..2417
                     /locus_tag="VGD38_20320"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY0730441.1"
                     /translation="MRTILQAENLEKVYRIGKVDVPALRGVSLEVQEGEFVAIMGPSG
                     CGKSTMLHLLGGLLTPTAGRIVIDGDDITAASDAKRTAVRRKKIGFVFQRFNLFPTLT
                     AEGNLRLAERIHGNGGGDPQRRRDVLKLLGLEGKLHHKPLELSGGEQQRVALARAVVT
                     RPAIVLADEPTGNLDSENSALVLNMFQELNYRFNQTIVMITHNPEAAAMCKRIVQMRD
                     GHIVENAPSVRL"
     gene            2889..>3323
                     /locus_tag="VGD38_20325"
     CDS             2889..>3323
                     /locus_tag="VGD38_20325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730442.1"
                     /translation="MKRLIPAGLMVAFIISALVFPATTNGQGAGLVSSVLSRMEKNRA
                     TLKSLRAGISMVKYNSQLGVEDKYNGVVIYLPSSGRQAAVRIDWSSPRREVFSVNNNK
                     YTILRPAQGVAYVGDARRAGSQNKANGLLEMMNMSRQQLEARF"
BASE COUNT          769 a          834 c          956 g          764 t
ORIGIN      
        1 agcccggctc gttaaagccg cagacgtgat tgacttactc gttgaagcac tcgcactcga
       61 acgcgccggc gggcgcggtc tcgacgaatt ttgggaagtc gccgagaatc ctcaattgca
      121 actcgaaggt ccggcaaaac agatcgttga cgatttactc gactcactac ttaaagctcg
      181 cgcccgatgc ctgacctgac actatccgtt tcctggagca gcatattgat cggtgcggcg
      241 ctcttcgtgg cgtcgttcgt tatcaatctg gcgatcgtgt cgatcattct cgtaaagctt
      301 ccggcggacc acttcagcaa gtcaaaccgg aaaaagtttg cggaagaccg tcatccggtg
      361 ttgcgcgtgc tgggcgtcat cggcaaaaac atcgccggcg tgttgttggt gatcctcggg
      421 atcgtgctgt cgcttccggg cgttcccggc cagggtcttt tgacgatttt gctgggcata
      481 atgctgctcg atttccccgg caaggatcga ctggaacaga agttgttgag tcgtccgagc
      541 attgtgaacg cgatcaacgg cttgcgcggc cgcttcggca aacctccgct cgagctcaac
      601 ggatcaaact gacacggaat ttcgcgattc tgtaatattt gacgtatgat taacggctta
      661 agctgatgct gaaacacttg cacccgtcca gagtccaact aacccgtttg ctactgccgg
      721 tattcgtcgc tttaatcgtc gtgctgaact ctgggtgtgg tctttttggc gcaaaaagga
      781 agattacggt tcctcaactc ctgaccccgt tagccgatgc taataaggac cgactgattc
      841 aggaggtcaa tcgtctttcg actgtcaggt cgatacacgg taaggtcgat attcagtttg
      901 aggatacttc atttgcttca tcgggcatcg cggatcagta ccgtctggtt gacggcacga
      961 tcacgttgca gcggccgggc aaaatctatc tcgttattca attcactttt gttgacatcg
     1021 cgcagatggc gtcggacggc gagcacttca gcgttgccgt gttgaaaggc gacgagaaat
     1081 acaagcgttt cgtgaaggga actaacagcg cggtctacgc gaagctcgac accgaagcga
     1141 atcacaccac ttcgcaaaat gagaagcaga agactgaaaa acagaccgtc agcgcgctgt
     1201 cgaatctgcg tccgcaacac ctgacagacg cgttcatgat tcgcccgatc gacgcgaata
     1261 gcggttcggt ttacgtgcaa agccagtttt tccaggaaga agctgactcg cggcggcagg
     1321 cgaaaaaggg cgatcgcgtg atgcgtggtt actatctgct cgaggagttt tcgcagccgc
     1381 aaggtaatga cgcgaaactg acgcgccgtt tttggttcga tcgcgtgagc gggattcgtt
     1441 tggcgcgcgt gcaaacgtac gacgatacgg gagcgctcat taccgacgtc tcttattcaa
     1501 tggaaagagc gcttgggagt ggcccgactg cgtcgttgcc gagccggatc gagatcacgc
     1561 gcccgcagga tcagtacaag ttgaacatca cttatcagga cgcagcgtcg gtcgaactca
     1621 atcgtgaata caacccgaaa gcgtttgtat tagagaacag gtggcaatta ccggaagtcg
     1681 atcttgacgc tcagaacaag aaagttaccg ccaatcagta gtcgatgaga acgattctac
     1741 aagcagaaaa tctggagaag gtttatcgca tcggcaaagt cgacgtgccg gctttgcgtg
     1801 gcgtgtcgtt ggaagtgcag gaaggtgagt ttgtcgcgat catggggccg tcgggttgcg
     1861 gtaaatcgac gatgttgcac ctgcttggcg gtttgctgac tccgaccgcg ggacgcatcg
     1921 tcatagacgg cgacgacatc accgcggcct cggatgcaaa gcgcaccgcc gtgcgccgca
     1981 aaaagatcgg ctttgtgttc cagagattca atctcttccc gactttaacg gctgaaggaa
     2041 atctccgact ggcggagcga attcacggca acggcggtgg cgatccgcag cgccggcgtg
     2101 acgtgttgaa gctgttggga ttagaaggca agctgcatca caagccgctg gaattatcgg
     2161 gcggcgagca gcagcgcgtg gcgctcgcgc gtgcggtggt cacgcgtccg gcgattgttt
     2221 tggctgatga gccgaccggt aatctcgatt ctgagaactc cgcgctagtc ctaaatatgt
     2281 ttcaggagct gaattaccgt ttcaatcaaa ccatcgtgat gatcactcac aatcccgagg
     2341 ccgcggcgat gtgcaagcga attgtccaga tgcgggacgg ccacatcgtg gaaaacgcgc
     2401 cttcagttcg attgtaatgt gttagaatca accgacccgc cagtcacgca tcttgtggct
     2461 gcttacttgc aagcttgaaa ttgtgcgagg cctgatttcc acactaaaga agatcttctt
     2521 ctggaactac gcgcgtaata cctggcaatg ggatctcctg tgtgtggtca ttttgatatt
     2581 catttttttg accccgaaaa gctggtttgc gagcagcgaa cgggctctaa atagcgtgca
     2641 tcaaagccca gttgccagga cactggtctt gagccccgaa gttgttggta gcgaagcaga
     2701 taagggtcag atcgaacaac acgtaaaggc cctgacgggg cgctccacag tggaggtaat
     2761 agctgttcga aaactagtcg atcccgatgg acggacacgc agcttcgagg ttgacatacg
     2821 ttgacctttc cctataattg cgaggttttt tgcgtgccga ggggaggaga ttgaggtaag
     2881 gagctagtat gaagagattg attcccgcgg gcctgatggt tgctttcata atttccgcat
     2941 tggtattccc ggccacgacc aatggccagg gagcaggcct cgttagttca gttctgagcc
     3001 ggatggagaa gaatcgcgcg acgttgaaga gtcttcgcgc cggtatcagc atggtcaaat
     3061 acaattcgca actcggcgtt gaagataaat acaacggagt tgtgatttac ctgccgagca
     3121 gcggacgtca ggcggctgta cgtattgatt ggagcagccc gcgccgcgaa gtgttctcgg
     3181 taaacaataa taagtacacg attttgcggc cggcacaagg agttgcttac gttggcgatg
     3241 cgcgccgcgc tggatcgcag aacaaggcca atggactgct ggaaatgatg aacatgtcgc
     3301 gccagcagct cgaagcgcgt ttt
//
LOCUS       DASWTX010001336         1841 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_257207, whole genome shotgun sequence.
ACCESSION   DASWTX010001336 DASWTX010000000
VERSION     DASWTX010001336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1841)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1841
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257207"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     regulatory      313..513
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            693..>1841
                     /locus_tag="VGD38_20330"
     CDS             693..>1841
                     /locus_tag="VGD38_20330"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HEY0730443.1"
                     /translation="MTRLTRAVFVSLLITVAIAGAVHAQTDNSGTISGHVKDPQSANV
                     PGATVTLYGRDRSFSLITSTDSNGAYSFKHLAPGEYLVEAEASGFAMASAQTVALTRG
                     QTATHDIALQLSGLRSSVVVTASDTPQTVDEVSKALTVVDTQEIEERNEYAIPESLRT
                     VPGLRVQQLGGPGSFTSIKTRGLPSEDTAVLIDGIRFRDPASTQGDASGFLEDLIVTD
                     VSRLEVLRGSGSSLYGSNAVGGVVNVVTDEGGGPIHGNVLGEGGNLGLFRTRAHLAGG
                     VNNNRVVYSAGFSFLNVTRGIDNEDEARTTSGQGRILFRLTPTATLSGRIYTANSRLQ
                     LNNSPQGIGNLPPTGIIEASPLSPDEQRRFEAGVPADQLNIGAATFVPA"
BASE COUNT          394 a          573 c          517 g          357 t
ORIGIN      
        1 atagcgagcg gtgatgggtt acccatggtt gtcgctgcgc tccaaccatg ggctggaatt
       61 agcgaacgcc ttcggcggta taccgtttcg cttacactcc aaccatgggc tggaattagc
      121 gaacgccttc ggcgttatgc cctgtcgctt accttcaaca cgccggtcgc tcgctcaacg
      181 cgcgggtcgc gtactcacca cgccgggcgc ggccgtgaca cgcgcgtggc ccagggacta
      241 gagtttgccc tcacgaaagc agcctgttct ttgcacattc aaatcgcaat ccacttcggc
      301 gtcacacgac tgccgaactg gaccgttgca ggtgcccatg agggtgacaa gggaagttgg
      361 gtgaaatgcc cagacggttc ccgccactgt gtaccggcga ttgcgtagct tccacatagc
      421 aggtcactga tctcgcgaga gattgggaag gccgtgaagc caacgcgtct gagccggaag
      481 tcaggaaacc ttgcctgctg caaacggatg cgaccaccaa cgctccggga aagagcaagt
      541 ggcgtcaacg caagttggtc tcgactgact ctttcaaaca gcccggccaa ccaaacgaca
      601 attcatcgag ttttagacgc cctcgatctt ccaacaggag agatcgaggg cgttttcttt
      661 ttgtttccga gtgggagaaa aggagacgac ccatgacaag acttacgcgc gcggtttttg
      721 tttcgctact catcacggtt gcgatcgctg gcgcggtgca cgcacaaacc gacaacagcg
      781 gaaccatcag cggacacgtt aaagatccgc aaagcgcaaa cgtgccgggc gcgacagtca
      841 cgctctatgg acgcgatcgc agcttcagcc tcatcacctc caccgattcg aacggcgcgt
      901 acagtttcaa acacctcgcg ccgggcgagt atctcgtcga agctgaagcg agcggctttg
      961 ctatggcgtc cgcgcaaacg gtcgccttaa cgcgaggtca aaccgcgacg cacgacatcg
     1021 ctttgcagtt gtcaggcttg cgcagctccg tcgtggtcac cgcctccgac acaccgcaaa
     1081 cggtcgacga agtctcaaag gcgctcaccg tcgtcgacac gcaggagatc gaagagcgaa
     1141 acgaatacgc gattcccgaa tcactgcgca ccgttcccgg cttgcgcgtg caacagctcg
     1201 gtggaccagg ctcattcacc tcgatcaaaa cgcgcggcct gccaagcgaa gacaccgcgg
     1261 ttctgatcga cggcatccgt tttcgcgatc cggcttcgac acaaggcgac gcctcaggtt
     1321 ttttggaaga cttgatcgta accgatgtca gccggcttga agtgctgcgt ggctcgggct
     1381 cgtctttgta cggctcgaat gccgtgggcg gcgtggtcaa cgtggtgact gacgaaggtg
     1441 gtggtcccat tcacggcaac gttctcggtg aaggcggtaa tctcggtctg tttcgcacgc
     1501 gggcacatct cgcgggcggc gtgaacaaca atcgcgtcgt ctacagcgcc gggttttcgt
     1561 ttcttaacgt cacgcgcggc atcgacaacg aagacgaggc gcgcaccacg agcggacaag
     1621 gccgcattct ctttcgtctc actccaacgg ccacactctc gggacgcatc tacaccgcaa
     1681 actcgcggtt gcagttgaac aacagcccgc aaggcatcgg caatcttccg ccaaccggca
     1741 tcatcgaagc gagtcccctc tctcccgacg aacaacgtcg cttcgaagca ggcgtgcctg
     1801 cggatcaact caacatcggc gccgccactt tcgttcccgc t
//
LOCUS       DASWTX010001337         5919 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_62503, whole genome shotgun sequence.
ACCESSION   DASWTX010001337 DASWTX010000000
VERSION     DASWTX010001337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5919
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62503"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..254)
                     /locus_tag="VGD38_20335"
     CDS             complement(<1..254)
                     /locus_tag="VGD38_20335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730444.1"
                     /translation="MREDLAAVNVTRTYTLAASNIAIFTFMLFFLYPRFENGSINPLL
                     FQATLIAMGIATFSLVFATLHYYRCSLGGRMSETERMHHAR"
     gene            393..1751
                     /locus_tag="VGD38_20340"
     CDS             393..1751
                     /locus_tag="VGD38_20340"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HEY0730445.1"
                     /translation="MKLTRRKFVQTLAAGTTLLGELGSAATTHFAQTSAAAKDSRPNI
                     IFILADDLGWGDLSCYGRPDYRTPNIDLLALQGTKFTDAYSASAVCTPTRCGYITGQY
                     PARFKIGLEEPLVATNHDVGLEPGHPTIASLLKQSGYDTALIGKWHLGFRPEWGPNAH
                     GFDEFFGILAGAGDYFLHTNGLGQRDLYENVTPVERNGYLTDLLTERAVNYVKKPRRA
                     PFFLSLHYTAPHWPWQGPKGGEKITFTDKAIEPAMMAAGGSLKLYAEMMKSLDEGVGR
                     VMKAIRAAGLDKKTLVIFTSDNGGERFSYQWPFAGRKGELLEGGIRVPAIVRWPGIVP
                     ANRVTQQMAISMDWTATIVAAAKTDARSLDGIDLLPVIKGASSERDRTFFWRIYDQDA
                     VRDGKWKFFRNGEVRRLFDLSLDQREQADFSKKHPEVLQRLMKEFDKWNDEMLPRRRA
                     RS"
     gene            complement(2548..3114)
                     /locus_tag="VGD38_20345"
     CDS             complement(2548..3114)
                     /locus_tag="VGD38_20345"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEY0730446.1"
                     /translation="MANFDSRVTIHMAASLDGFIARKDGRVDWLETADEFVGGESLEP
                     SDVEAFLKTIDCYVMGSRTYETALNFEAQGLGWSYGDKPTFVLTSRNLPRSRDTVEFY
                     SGDLSKFVNERLRPAFGSIWFVGGGTVAGECLRLGLADEIRYSILPILIGDGIPFFDK
                     LGRDVSLHLAEVTAYNSGIVELRYEVRQ"
     gene            3260..4759
                     /locus_tag="VGD38_20350"
     CDS             3260..4759
                     /locus_tag="VGD38_20350"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase F"
                     /protein_id="HEY0730447.1"
                     /translation="MLVLSLCVIFITACKTETQQSSQTSTPSPPTGQTDAPRAENIDP
                     SILDRLKNEHWTGDVDGLLERRYIRALVLYNKTNFFYDGPQPRGITYEALKEFEKFLN
                     AKLNTGNKPVHLIFIPVSPEEGLKRMRDGRGDIAASNLAILPQVQQFVDFSDPIRERV
                     RQVVVTGPSSPPITSLDDLSGKEVFVRKLSRYWPNIERLNERFRSEGRAPAILREADQ
                     NLQDEDILDMVNAGLVGATIMDDLVAGFWSKVYDGIRVHSELSLADDDKIGWAVQKGT
                     PKFLSLINEFVKDHKVGTSFGNVMLQKYLRDTKWAKNSVAPGEMEKFKAAIAFFKKYA
                     GQYKFEWLMIAAQAYQESTIDQTKTSSAGAVGVMQIKPSTAADKSVNIHGVDKDIEKN
                     INAGVKYLNFIMENYFTDAQMNRIDRGLFAFASYNAGPNRIAKLRKQAEAEGLNPNVW
                     FNNVELVAAKEIGAETVTYVSNIYKYYVAYQMASENAAKPRTKNAKANI"
     gene            4740..5138
                     /locus_tag="VGD38_20355"
     CDS             4740..5138
                     /locus_tag="VGD38_20355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730448.1"
                     /translation="MRKQISERIAKLIEDYPATSDDSPELQKLVAQEKVLPLCCDMGG
                     VLAINAELEIRSFLWDNTLHGQIEHDPRIRNVALFQGSKKYPELELLIEKPNDARVCE
                     YCEGTGVDPYAKKLETDAIVCYCGGLGWLP"
BASE COUNT         1479 a         1580 c         1583 g         1277 t
ORIGIN      
        1 cgcgcgtgat gcatcctttc ggtctcactc atccgtccac cgagcgaaca ccggtagtag
       61 tgcaacgtcg cgaaaacgag tgagaaggtt gcgattccca tcgcgatcag cgtcgcctga
      121 aacaggagag gattgatgct gccgttctca aacctcgggt acagaaagaa cagcatgaac
      181 gtgaagatcg cgatgttcga cgcggcgagt gtataagtgc gagtgacatt aactgcggca
      241 agatcttctc tcatcaaacg cctccattgt ggtgacatgc ggcgcgatct cacaccgcgc
      301 agggtgcatc atctcgcacg gcttgaatta taagcaaaca tggaccggcc cagagtgctg
      361 tactttgcgt ggttccattg tagtattcgc gcatgaaact tacgcgtcga aagttcgtcc
      421 aaaccctggc cgcgggtaca actcttctcg gcgagctcgg ctcggctgca acaacgcact
      481 tcgctcaaac atcggccgca gcaaaagact ctcgcccgaa catcatcttc attcttgctg
      541 acgacttagg ctggggagat ctcagttgtt acggccggcc cgactatcgc actccaaaca
      601 tcgatctcct cgctctacaa ggcacgaaat ttaccgacgc ttattctgcg tccgcagtct
      661 gcacgccgac gcgttgcgga tacatcacgg ggcaataccc ggcccgtttc aaaatcggtt
      721 tggaagaacc attagtggct actaaccatg acgtcggtct cgagcccggc catccgacga
      781 ttgcttcatt actcaagcag agtggttacg acaccgcgct gatcgggaag tggcatcttg
      841 gttttcgccc ggagtgggga ccaaatgcgc acggattcga cgagttcttc ggcatcctcg
      901 ctggagcggg cgactacttc ctgcacacaa acggtttggg ccagcgcgac ttgtacgaga
      961 acgtgactcc cgtggaacgc aacggttatc tcaccgatct actgacagaa cgagcagtca
     1021 attacgtgaa gaaaccacga cgcgctcctt tcttcctgag cctgcattac accgcgccgc
     1081 actggccgtg gcaggggccc aaaggcggcg agaaaattac gttcaccgac aaagcaattg
     1141 agcccgcaat gatggccgcc ggcggttctc tgaagttgta tgccgagatg atgaagagct
     1201 tggacgaggg tgttggtcgc gtaatgaaag caatcagagc cgccggcctg gataaaaaga
     1261 cactcgtgat cttcacaagc gacaacggcg gcgagcggtt ctcgtatcaa tggccgttcg
     1321 cggggaggaa aggtgaactg cttgaaggtg gaatccgtgt gccggcgatt gttcggtggc
     1381 ccgggatcgt tccggccaat cgcgtaacgc aacaaatggc gatatcaatg gattggactg
     1441 cgacaattgt tgctgctgct aaaacagatg ctcgttcgct tgatggcatt gatctattgc
     1501 ccgtgatcaa aggcgcgagc tcagagcgcg atcgcacttt cttttggcgg atctatgacc
     1561 aggacgcggt gcgagacggg aaatggaagt tctttcgcaa cggcgaggtt cgccgcctgt
     1621 tcgacctgtc tctcgatcag cgcgagcaag cggactttag taaaaagcac cccgaggtcc
     1681 tacagcgatt gatgaaagaa tttgataaat ggaacgacga aatgctgccg cgacgacggg
     1741 cgagaagcta acgttgacag ggtgaccacg tggggcgcgg ctcaggagga gacaattcct
     1801 cggtcaacaa gtaaagctcg acctctggtt tgagtcgata accaccgtca atcagtttta
     1861 tgcgctcggg cggaacggaa cgcgtccgca gtacatgccc catgatagac gtcttgtacg
     1921 tcaacatccg ctttgggccc gtgtcacgac ctttatataa gacgatatag ccggtccagc
     1981 tcttctcgtt gagcaaagcg attatgtagt tgtccaacct ggcgagtgca tcgtcaacag
     2041 acccgagttg aaaatcatcg aaatctatgg accgctgaat actttcgtca agcagtgggg
     2101 aacaaggaca gcgcagtgca gagtcgtcgc tggagggaat gtgactaact tcctggacca
     2161 taccttccga ggaaattgtg tactccactc cttcagcgcg actcgagtag aacctggtga
     2221 aagtatcgtc ggcggcctta taaaacttac tctcgttgag tttgagatca gtgaacttta
     2281 ccggctgctt cggtcgaact tcgagtgtaa ggaccttatc agccgcaacg ttccaccctg
     2341 atgggtatcc ggcacatggg gcttttgcat actcaactct gacggtttca ctttccgtct
     2401 cgtaaaagca tttacactcc cccgtagccg cccccaacaa cctctccacg tcagcgcgat
     2461 cagaatgcaa aggcacaatc cccctccagc ctttagcatc aacgctccaa cacgacacga
     2521 cgatcaaaat gacagtgaag attatcttca ttgtcgcacc tcgtaacgaa gctccactat
     2581 gccactgttg taagccgtga cctccgcaag atgcagactg acgtccctgc cgagcttgtc
     2641 gaaaaatggt attccgtcgc cgatcaagat cggcaggatc gagtaacgaa tctcgtcagc
     2701 cagtccaaga cgaagacatt cgcccgcgac ggtcccaccg cccacaaacc agatgctgcc
     2761 gaacgcgggc cgcagtcgct cattcacgaa cttcgaaaga tcgcccgagt agaactccac
     2821 cgtatcgcga gatcgcggca gattgcgact ggtaagtacg aacgtaggct tgtcgccgta
     2881 ggaccagccc aggccctgcg cctcaaaatt cagcgcggtc tcgtaagttc gcgaccccat
     2941 gacgtagcag tcgatcgtct tcaggaaggc ctcgacatcg cttggttcga gggactcgcc
     3001 accaacgaac tcgtctgcag tctcgagcca atcgacgcgt ccatctttac gagcgatgaa
     3061 gccgtcaaga ctcgcagcca tgtgaatcgt tacacgcgaa tcgaagtttg ccataacgtt
     3121 gaacgtgaca gcgtacggac accgttcgcg ccctgtcaat tttgcgagta gataaccgaa
     3181 ctgaacgacg ttaaatgtga gggcaagttt cacatagtgg gttgaattta tgatgtgctt
     3241 ctcccaacct cccaagattg tgctcgtttt gtctctgtgt gtaatcttca tcacggcttg
     3301 caaaaccgaa acgcagcaat cttcacaaac cagcactccg tcaccgccca caggccagac
     3361 cgacgctccg cgagctgaga acatcgatcc atcgattctc gatcgcctga agaacgaaca
     3421 ttggaccggt gacgtcgacg ggctgttgga gaggcgctac atccgcgcgc ttgtccttta
     3481 taacaagaca aactttttct atgacggtcc gcagccacgc ggcatcacgt acgaagcgct
     3541 caaggaattt gagaagttcc tgaatgcgaa actgaacacg ggtaacaagc ctgttcatct
     3601 aatcttcatt cccgtctctc ccgaagaggg ccttaagcga atgcgcgacg gcagaggaga
     3661 tatcgcagcc tcaaacctcg cgatacttcc ccaggtccag caattcgtgg atttctccga
     3721 tccgattcgc gaacgtgtga ggcaggtagt tgtaactgga ccatcgtctc cgccaatcac
     3781 gagtctcgac gatctatcag gcaaagaagt gttcgtcaga aaactcagcc gctactggcc
     3841 caacatcgaa aggctgaacg agcgtttccg ctccgaagga cgagcgccgg caatacttcg
     3901 agaagccgac cagaatctgc aggacgaaga catcctcgac atggtgaacg ccgggcttgt
     3961 cggcgcgacg atcatggacg atctggttgc gggcttttgg tcaaaggtgt acgacggcat
     4021 tcgtgtgcat agcgagttgt cgttagcaga tgacgacaag atcggttggg ccgtgcagaa
     4081 aggaacgccg aagtttttga gtctgatcaa tgaattcgtt aaagaccaca aggtcggtac
     4141 gtcgttcggc aacgtgatgc tgcaaaagta tttgcgagac acgaagtggg cgaagaacag
     4201 cgttgcgcca ggggagatgg agaagttcaa ggcggcgatt gcgttcttca agaagtacgc
     4261 cggtcagtac aaattcgagt ggctgatgat cgccgcgcag gcgtaccagg agtcgacaat
     4321 cgatcaaacg aagaccagct ctgcgggcgc ggtcggcgtc atgcaaatca aaccgagtac
     4381 ggccgctgac aaatcggtaa acattcacgg cgttgataag gacatcgaga aaaacatcaa
     4441 cgccggcgtg aagtacttga acttcatcat ggagaattac ttcactgatg cgcagatgaa
     4501 tcgcatagac cgcgggctgt tcgcgttcgc ttcctacaac gccggaccga atcgcatcgc
     4561 aaagcttcgc aagcaggctg aggctgaagg tttgaacccc aatgtgtggt tcaataatgt
     4621 agagctggtg gcggccaagg aaatcggcgc cgagacggtc acttacgtca gcaacattta
     4681 caagtactac gttgcctacc agatggcgtc agagaacgcg gcgaagccac gaacgaaaaa
     4741 tgcgaaagca aatatctgaa cgcatcgcca aactaatcga agactatccc gccacctccg
     4801 atgactcccc agagttgcag aaattagttg ctcaagaaaa ggttttgccg ctctgttgcg
     4861 atatgggagg cgtgttggcc atcaatgcag aactcgaaat ccgctccttc ctctgggata
     4921 acactctaca cggccagata gaacacgatc cgcgcatccg caacgtggct ctgtttcaag
     4981 gcagcaagaa atatcccgag ctggagcttc tcatagaaaa gccgaacgac gcgcgcgtct
     5041 gtgaatattg cgaaggcacc ggagttgatc cttacgcaaa gaaactggaa acggatgcga
     5101 tagtttgtta ctgcggtggt ctgggttggc tcccgtaacc gagtttaata aacgttcggc
     5161 gtgacagata ttcaacagat gacgagggtg ttatttgcaa gaaccggtga gggggaccgg
     5221 ctccgggatt aaggggcgaa ttacggcaaa aggcgttacc cgcaaacatt ccgcttcaag
     5281 caatcgagtc tctgcatcaa ccattccgca aaggtttcgt tcggcgcagt gattgaatgc
     5341 aaggtgctcg cggtgttcgc gagggctttc gaatgcgaag attcttcgag agtagccatc
     5401 aggaccagca gcgttagttt atgaagtgct acagttccgt tagttggaaa cgtttggtag
     5461 aagctcacga actcttagaa gtaaatcttc ctcactcact cccgtgaggc tcctaacctg
     5521 aggtaactcg tcgtcgagag gagcaactcc cgctcgtgtc aattcatacg cggtcaaata
     5581 gacaggtcgg cttattgtgt tttgaattac gccgaaggcg ttcgccaatt tcagcccaag
     5641 gttggcacaa ccttgggtaa catactaaag aaacgaacgc aacgctgaaa gcgttggcga
     5701 acttgtgcgg tccgttggcc aacgctttca gcgtttcgat gcggtgttgt tgaagtccca
     5761 gggttctcgc gatgctcgaa ccctgatgtt atgaagcagc gcctccgttc gtgagtgcta
     5821 gactcacgag cagctctgtt gacatggaga ctgaaaggag gcgctgtgca gaaaatatat
     5881 atcggcgttg actttcatgc acgccaacaa accatctgt
//
LOCUS       DASWTX010001338         3171 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_190110, whole genome shotgun sequence.
ACCESSION   DASWTX010001338 DASWTX010000000
VERSION     DASWTX010001338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3171
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190110"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..749
                     /locus_tag="VGD38_20360"
     CDS             <1..749
                     /locus_tag="VGD38_20360"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0730449.1"
                     /translation="KPQTDTFEYRFDPTRPESRAARLLVDDVLQRGKGRTDVAQVAEQ
                     RVTEPGARYVDFLVPGLIGMNMMGSGLWGLGFTIVIARSRKLLKRFAATPMRRSHYLL
                     SFMLSRLVFLVLEVAAVIIFAALAFGFTVRGSWLSLILVTILGGFTFSGSGLLVAARP
                     TTIEGVSGLMNFIMLPMWLLSGTFFSSERFPQVLQPFIQILPLTALNNVLRALMNEGT
                     SLASNWMPIAILLFWFVVSFVVALKIFKWQ"
     gene            complement(753..1454)
                     /locus_tag="VGD38_20365"
     CDS             complement(753..1454)
                     /locus_tag="VGD38_20365"
                     /inference="COORDINATES: protein motif:HMM:NF018178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 16 glycoside hydrolase"
                     /protein_id="HEY0730450.1"
                     /translation="MNLRAARLLFSFFGAALSILVIISATSGYQTQTISLDSPDQLKP
                     VNVKIDNVSFKGRKALRVSDAAQAGLGDEGRLVVLTKTDFQDGVIEVDLAGEPGPNAA
                     EGARGFVGVAFRVAPDQSRFECFYLRPTNGRADDQLRRNHSAQYISVPGFPWHQLRKD
                     FPGKYETYVDLLPAEWTRVKIEVRGEKARLYVNGVEQPTLLVNDLKQKPSKGAVALWI
                     GTGTVAHFSNVRISN"
     gene            1538..3058
                     /locus_tag="VGD38_20370"
     CDS             1538..3058
                     /locus_tag="VGD38_20370"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEY0730451.1"
                     /translation="MSFDRNAELAGAFLENACADPLLANGPAAHLRRSNTALRMLRRY
                     PEIARDSIHTAVGCGDLEAIERILAGRPEAASEPGGPQRRRHLRELEQLWTPLLHLCY
                     GRLPLAAAADNAVAIARLLLDHGANPNDYFEVGDGPHRYTALCGVAGEGEDDAPPHPQ
                     REALAQLLLDHGADPYDTQLFYNTHFHGNILWILESLYERAAKIGRPFDADPEWSGIN
                     IGGYGLGARYFLTEAIAQNNLELAEWLLKHGANPNAAPPPHPNEPKYSLHEDALRRGH
                     VEMAELLVRYGATPSQYVRDGVEAFTDVCLRLDEHEARALIAQHPEYLHSTVPIFTAA
                     KRDRADVVALLLDLGTPIEIADESQIRPLHVAAYSDALNAAALLIERGADLEAIESNW
                     NNTPLGFATYGNRSRMIELISRHTTDVYRLTWTGHIERLKEVLSAQPELAKLNDGSTP
                     LMWLPDDDALAIEAVKLLVSYGADPAAKSNQGLTAADYARKWALYDTADLLDSLTR"
BASE COUNT          606 a          895 c          949 g          721 t
ORIGIN      
        1 tcaaaccgca gaccgacacg ttcgaatatc gtttcgatcc gacgcgcccc gagagccgtg
       61 cggcgcgact cctcgttgac gacgttttgc aacgcggcaa aggccgcacc gacgtcgcgc
      121 aagtggcgga acagagggtc acggaacccg gcgctcgtta cgttgatttt ctcgtgccgg
      181 gcttgatcgg catgaacatg atgggcagcg gcttgtgggg tctgggcttc acgatcgtga
      241 tcgcgcgttc gcgaaaactg ctcaaacgtt tcgcggcaac gccgatgcgg cgttcgcatt
      301 acctgctttc gttcatgctc tcgcggctcg tgtttttggt gcttgaagtc gcggcggtga
      361 tcatcttcgc ggcgcttgcg tttggattta cagtgcgtgg gtcgtggctc agtctgattc
      421 ttgtgacgat actcggaggc ttcacttttt ccggcagcgg attgctcgtc gcggcgcggc
      481 cgacgacgat cgaaggcgtg tcgggtttga tgaacttcat catgctgccg atgtggctgt
      541 tgtcgggaac gttcttttcg tcggaacgat ttccgcaagt gctgcaaccg ttcattcaaa
      601 ttctgccgct gacggcgctg aacaacgtgc ttcgcgcgct gatgaacgaa ggcacgtcgc
      661 tcgcgtccaa ctggatgccg atcgcgatcc tgctgttttg gtttgtcgtc agcttcgtgg
      721 tcgcgttgaa gattttcaag tggcagtgat ctctaattcg agatccgcac gttactaaaa
      781 tgcgcgacgg ttcccgttcc gatccataac gccactgctc ccttactcgg tttttgcttc
      841 aggtcgttga cgagcagcgt cggctgctcc acaccattca cgtacagccg cgctttttcg
      901 ccgcgcactt cgatctttac cctggtccac tcggccggca gaagatcgac atacgtttcg
      961 tactttcccg gaaagtcttt tcggagttgg tgccagggaa aaccgggaac tgaaatgtat
     1021 tgcgccgaat gattgcggcg tagttgatcg tcggcgcgtc cattcgtggg ccgcaggtaa
     1081 aaacactcga accgcgactg gtccggcgcc acgcgaaacg caacgccgac gaatccacgg
     1141 gcgccttcag cagcattcgg ccccggctcg ccggcgagat cgacctcgat gacgccgtcc
     1201 tgaaaatcgg ttttcgtcag caccacaagc cggccttcat cgccgagtcc ggcctgtgcg
     1261 gcgtcactca cgcgcagggc cttgcggcct ttgaacgaga cgttatcgat cttcacgttc
     1321 accggtttta actggtccgg cgagtctaat gagatcgtct gcgtttgata tccggatgtt
     1381 gcgctgatta tcacgaggat gctcaacgcg gcgccaaaga acgaaaaaag taaacgtgca
     1441 gcacgtaaat tcatcgcgtc ctcccttttg gggctttgct tgtatttgtt tctgaaggct
     1501 cagcgtcgta tacgtatgaa cgaggaggcg aggttcgatg agtttcgacc ggaatgctga
     1561 attagctggg gcgtttctgg agaacgcgtg cgccgatccc ctcctggcga atggtccagc
     1621 cgctcattta agacgttcaa ataccgcgtt gcgcatgttg aggcgttatc cggagatcgc
     1681 ccgtgacagc attcatactg ctgttgggtg tggtgatctt gaggcgatcg aacgcattct
     1741 tgcgggacgg ccggaagccg cttctgagcc gggtgggcca cagcgccggc ggcacctgag
     1801 agaactcgag cagctttgga cgccgttgtt gcacctctgt tatggacggc ttccgcttgc
     1861 tgctgcggcg gacaatgcgg ttgcgatcgc gcggctgtta ctcgatcacg gcgcgaatcc
     1921 gaacgattac ttcgaggtgg gtgacggacc acatcgctac acggcgcttt gcggagttgc
     1981 gggcgaaggc gaggacgatg cgccgccgca tccgcaacgt gaagcactcg cgcagttgtt
     2041 gttggaccac ggcgccgatc cgtacgacac gcagctcttc tacaacactc atttccacgg
     2101 caacatactc tggattctcg aatcgctgta tgaacgcgcc gcgaagattg ggcggccgtt
     2161 cgacgctgat ccggagtggt cgggtatcaa catcggtggc tatggtcttg gcgcgcggta
     2221 tttcctcact gaagcgatcg cacaaaataa tctcgaactg gccgagtggc tgttgaagca
     2281 cggagcaaac ccgaacgcag ctccgccgcc gcatccgaac gagccgaagt attcattaca
     2341 cgaagacgca ctccgtcgcg gccacgttga gatggccgag ttgttggtgc gctacggcgc
     2401 gacgccgtcg cagtatgtgc gcgacggtgt cgaggctttt acagacgttt gtttgcgtct
     2461 tgatgagcac gaagcccgcg cgttgatcgc gcaacatcct gagtatctgc attccaccgt
     2521 gccgatcttc accgccgcta aacgcgatcg cgcagacgtt gtagcgctct tgctcgatct
     2581 cggcacgccc atcgagatcg cggacgaatc gcagatccgg ccattgcacg ttgctgccta
     2641 cagcgacgcg ctcaatgcgg cggcattgct gatcgagcgt ggtgcggacc ttgaagcgat
     2701 cgaaagcaat tggaacaaca cgccgctcgg tttcgcgact tacggaaatc ggtcgcgtat
     2761 gatcgagctc attagcaggc acactacaga cgtgtatcgt ctgacgtgga cgggacacat
     2821 cgagcgcctg aaagaggtgc tcagcgcgca gcccgagttg gcaaaactca acgacggcag
     2881 cacgccgctc atgtggctcc ccgacgacga cgcgctcgcg atcgaagctg tgaagctgct
     2941 cgtcagctac ggcgccgatc cggcagcaaa aagcaatcaa ggattaaccg ccgcggatta
     3001 cgcgcgaaag tgggcgctgt atgacacggc cgatcttctc gattcgctga cgcgctgaag
     3061 ttggtgacga tcgttgtagc actggcagcg tccatactta tcttgtgaaa aagagaacgc
     3121 gagtgttgtt ggttgtcggc gtggtcttcg cgctgttggt tgcgctttgg g
//
LOCUS       DASWTX010001339         1946 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_323640, whole genome shotgun sequence.
ACCESSION   DASWTX010001339 DASWTX010000000
VERSION     DASWTX010001339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323640"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..695)
                     /locus_tag="VGD38_20375"
     CDS             complement(<1..695)
                     /locus_tag="VGD38_20375"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY0730452.1"
                     /translation="MVAIGYTYVGYPLLLMLLSKLRGRPVQRREFEPSVTVIIAAYNE
                     ERDIAQKLENTLALDYPKDKLEILVTSDCSSDRTDEIVRSFAPRGVRLHRQEERLGKT
                     AAQNAAVEKSTGEVLLFSDATTHYRPDVLRRMIPSFADPSVGCVTGNVVYSHDTNSSV
                     SHGTRSYWNYEFLLKKHESAITSLIGVCGCMYAVRKSAYVPLYHEACSDFLVATTMVR
                     QGLRAVYEPDAVCV"
     gene            complement(777..1805)
                     /locus_tag="VGD38_20380"
     CDS             complement(777..1805)
                     /locus_tag="VGD38_20380"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY0730453.1"
                     /translation="MSAQLKKVAGRSKTLIILHRIVDNWRRRRAFESGQTTNAYGSTH
                     EFWSLEKSVDYINLVYREYLEYSGLTPDTFRGRRILEVGPGDNFGVALKFLADGAAKV
                     VSLDKFYSERNEEQQARIYRALRNQLRPEQAAVFDEALSLASGVGLNENRVQYIYGHG
                     IEEADRILEPESFHFIVSRAVLHNVYDIDQGFEAMDRLLAPGGYMAHKIDFSDENMFS
                     SRGMHPLTFLTIPESIYRLMAKDSGKPNRRLVNDYREQMRKRGYEAKLFISSIVGVGP
                     LSPHKEKIERGVDYGNKTVSLIEEIRPKLASPYRKLAEEELAPAGIFLVARKPESARK
                     ATNPAGKA"
BASE COUNT          396 a          598 c          535 g          417 t
ORIGIN      
        1 acgcagactg cgtcgggttc gtaaaccgct cgtaagccct ggcggaccat cgtcgtcgcc
       61 acgagaaaat cgctgcaggc ttcgtgatag agcggcacgt aagccgactt gcgcaccgcg
      121 tacatgcaac cgcaaacgcc gatcagcgac gtgatcgcgc tctcgtgttt cttcaaaagg
      181 aattcatagt tccagtagga acgtgtgccg tgactcacgc tcgaattcgt gtcgtgcgaa
      241 tagacgacgt taccggtgac gcagccgaca gacggatcgg caaacgacgg gatcatccgg
      301 cgcagcacgt cgggccggta gtgcgtagtc gcatccgaga acaacaggac ctcgccggtg
      361 gacttttcga ccgcggcgtt ctgtgcggct gtcttgccga gccgttcttc ctgccggtgc
      421 aaacggacgc cgcgcggcgc gaagctgcgg acgatctcgt ccgtgcgatc tgacgagcag
      481 tcggacgtga cgaggatttc gagtttgtct ttcggataat cgagggcgag cgtgttttcg
      541 agcttttgcg cgatgtcgcg ctcctcgttg taagcggcga tgatcacggt cacggacggc
      601 tcaaactcgc ggcgctgcac gggccttccg cgaagcttgc ttagcaacat cagcagcagc
      661 gggtagccga cgtacgtgta gccaatcgcc accaccgcaa accagaaaat gatctctaca
      721 actctgatgt ttagcctccc gtgaaagccg actaaggctc attaaacaac gaaaatctag
      781 gcttttccag ccggatttgt cgcttttctg gcactttccg gcttccgagc cacgaggaag
      841 atgcccgcgg gggccagttc ttcctcggcc aacttccggt acggagacgc cagtttcggg
      901 cgaatctcct cgatcagcga cacggttttg ttgccgtaat cgacgccgcg ctcgatcttt
      961 tccttgtgcg gcgacaatgg tcccacgccc acgatcgacg agatgaaaag cttcgcttcg
     1021 taaccgcgct tgcgcatctg ctcccggtag tcgttcacga gacggcggtt cggcttgccc
     1081 gaatccttgg ccatcagccg gtaaatgctc tcgggaatcg tcaggaacgt cagcgggtgc
     1141 atgccgcggc tgctgaacat gttctcgtcg ctgaaatcga tcttgtgggc catgtagccg
     1201 ccgggcgcga gcaggcggtc catcgcttcg aagccctggt cgatgtcgta aacgttgtgc
     1261 agcaccgcgc gcgagacgat gaagtgaaag gattcgggtt cgaggatccg atccgcctct
     1321 tcaatcccgt gcccgtagat gtactgaacg cggttttcat tcaatcccac cccgctcgcc
     1381 aacgatagcg cctcgtcgaa cacagcggcc tgttccggcc ttagttggtt cctgagcgcg
     1441 cgataaatcc gcgcctgctg ctcctcattc cgctccgagt aaaacttgtc cagactcaca
     1501 accttcgccg cgccgtcagc cagaaacttc agcgcgacgc cgaagttatc tcccggccca
     1561 acctccagga tccggcgccc gcgaaacgtg tccggcgtca gccccgaata ctccagatac
     1621 tcgcgataga ccaggttgat gtagtcgacg ctcttttcga gcgaccagaa ttcgtgagtc
     1681 gagccgtaag cgttcgtcgt ttggcccgac tcgaacgccc ggcgccgccg ccagttatcg
     1741 actatgcggt gcaggattat cagggtcttc gatcgacccg caaccttttt cagttgggca
     1801 ctcacaacca ataaaaaacc acagattaca ccgacttcca aatcagcgta atctgtggat
     1861 gtttcgaact tatcgccctt agactactac ttccttttca tcaaactcaa acaccagcgt
     1921 cttgacgtgg gcccgcaggg ccagtt
//
LOCUS       DASWTX010001340         1652 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_257445, whole genome shotgun sequence.
ACCESSION   DASWTX010001340 DASWTX010000000
VERSION     DASWTX010001340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1652)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1652)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1652
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257445"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1474)
                     /locus_tag="VGD38_20385"
     CDS             complement(<1..1474)
                     /locus_tag="VGD38_20385"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspE/PulE family protein"
                     /protein_id="HEY0730454.1"
                     /translation="MEQVSETNNPMIQAVSPAGQNGEEHVPPEMKAAKELARRYRLPF
                     VDLLPHDRESPIDYQLFTEVPVDLMVRHQFVPLKKDEKGLYIAMADPTDLERLDELSS
                     TLRTRIIPHVATAGAVEVVLRKGDTTQRVLQEAASGFRISLVKETEHGEEVLDLDRLA
                     TDAEMSPIIKLVDTIIYNAMESRASDIHIETRDTEVQVKYRIDGALYAKVDPIDLAYH
                     QTLISRIKVMSELDIAERRVPQDGRFRVRYKGRNVDFRVSIMPTIHGEDAVIRILDKE
                     QINEEFRNLNLNVVGFADDDLRKFRRYIMEPYGMVLVTGPTGSGKTTTLYAALNEIRN
                     EEDKIVTIEDPVEYQLHGITQIPVNEKKGLTFDRGLRSILRHDPDKIMVGEIRDTETA
                     QIAIQSALTGHLVFTTVHANNVIDVIGRFLNMGVEPYNFVSSLNCVLAQRLIRMLCPY
                     CKRHYRPSDDELTESGLKPDHYRDRPFYMNVGCDACNHTGY"
BASE COUNT          316 a          460 c          492 g          384 t
ORIGIN      
        1 tgtagccggt gtggttacag gcatcgcagc cgacgttcat gtagaacggc cggtcgcggt
       61 aatggtcggg tttcagtccc gactccgtca gttcatcgtc actgggccgg tagtgccgtt
      121 tgcaatacgg gcacagcatg cgaatgagtc gttgcgccag cacacagttg agcgaagaaa
      181 cgaagttgta cggctctacg cccatgttca ggaatcggcc gatcacgtcg atcacgttgt
      241 tcgcgtggac cgtagtaaat acgaggtgac cggtcagcgc ggattggatg gcgatctgcg
      301 ccgtttcggt gtcgcggatc tcgccgacca tgatcttgtc agggtcgtga cgcaggatgg
      361 aacgcagtcc gcgatcgaac gtcagtccct ttttctcgtt gaccggaatc tgcgtgatgc
      421 cgtgcaactg atattcgacc gggtcttcga tcgtgacgat cttgtcttct tcgtttctga
      481 tctcgttcag cgcggcgtag agcgtggtcg tcttaccgga accggttgga ccagtgacga
      541 gcaccatgcc gtacggctcc atgatgtagc ggcgaaactt ccgcaggtcg tcatccgcaa
      601 acccgaccac gttcaagttg agattgcgaa actcttcgtt gatctgttcc ttgtcgagaa
      661 tacgaatgac cgcgtcttcg ccgtgaatcg tcggcatgat cgagacgcgg aagtcgacgt
      721 tgcgtccttt ataacgcact cggaaacggc cgtcctgcgg cacgcggcgc tcggcgatgt
      781 cgagctcgga catgaccttg atacgcgaga tcagcgtctg gtgataagcg agatcgatcg
      841 gatcgacttt cgcgtagagc gcgccgtcga tgcggtactt cacctgcact tcagtgtcgc
      901 gtgtttcgat gtgaatatcc gacgcgcgcg actccatcgc gttgtaaatg atcgtgtcga
      961 cgagtttgat gatcggcgac atctcggcgt cggtcgcgag gcgatcgagg tcgagcactt
     1021 cttcgccgtg ttcggtttcc ttgacgagcg agatgcgaaa acccgaggcc gcttcctgca
     1081 acacgcgctg cgtcgtgtcg cctttgcgca gcacgacttc gaccgcgccg gcggtggcga
     1141 cgtgcggaat gatccgcgtc cgcaacgtgc tcgatagttc gtcgagccgt tccaggtcgg
     1201 tcggatcggc catcgcgatg tacaagcctt tttcgtcctt tttgagcggg acgaactggt
     1261 gccggaccat caggtcgacg ggcacttcag tgaagagctg gtaatcgatt ggtgattcgc
     1321 gatcgtgcgg cagcagatcg acaaacggca gacgatatcg gcgcgcgagt tccttcgccg
     1381 ccttcatctc gggcgggaca tgctcttcgc cgttttgacc agccggtgaa accgcctgga
     1441 tcatcggatt gttggtttct gacacttgct ccattagtga acgccggtca ctcccgcacc
     1501 gctcgagatc gattgaatga ttggaaggta gatggcgagg agaatcgtta ctaccacacc
     1561 gcccatcacg agaagaatcg caggctccag cgtcgtcgtc aactgttcca accgcacttc
     1621 cgattcagcg tcgtagaaaa ctgctacttc at
//
LOCUS       DASWTX010001341         5247 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_280384, whole genome shotgun sequence.
ACCESSION   DASWTX010001341 DASWTX010000000
VERSION     DASWTX010001341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5247)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5247)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5247
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280384"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            411..1610
                     /locus_tag="VGD38_20390"
     CDS             411..1610
                     /locus_tag="VGD38_20390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730455.1"
                     /translation="MTLDILKEKGIPLDKQRFTWRELVQTPTSKLDDDAFTRVRIILM
                     NGLESDALRTKHAMARMLNGDMRLPLAEVRRVEQHQQTMVNWLLPADLSPIETTIAFE
                     QVAIEVTASVAQHEPDEYLAQVYRFGLLEDFDHLYRFSALMDRVMGADANNIIQNYSD
                     VMPGRPTMVEHRAPEDDLRNHYDCTTADPLTKIHAATITAAENQTHDYYMTIGPMFAD
                     PIARQLYAEIASIEEQHTTQYESLLDPNETPLERWLLHEAMEVYNYFGCMQYETNPRI
                     KQIWERFCDYELGHLHMVMEMMKKFEKRDPAELLPQTLPEAIEYDSHRQFVRETLNAE
                     VDLRAAGTQFIHKDEEPSRAPRSIEYREQMNSEGSPSEIVAAGYNWTPGTELIEKKSV
                     FAKGASA"
     gene            1607..2323
                     /locus_tag="VGD38_20395"
     CDS             1607..2323
                     /locus_tag="VGD38_20395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEY0730456.1"
                     /translation="MSTAAKMTGNRTGIQTSPELAEELIEGAVNATPSSEGDALEIAE
                     SRGEYISEGYMLGSMPLVPASDEAEADEDEVGMAVLLDKLSERLAFERMGTRLYEALR
                     NKCEMLGEVAPGPTLEEIDQIGREELEHFLLLNDTIAGLGGDPTLQSPCADAIGVASM
                     GIVQVLTDPRSSMAHCLSAMLTAELTDNAGWELLIKLADNLGYDEMKTEFEGALADEE
                     RHLLNVRTWLSECVLDSAEV"
     gene            2354..2686
                     /locus_tag="VGD38_20400"
     CDS             2354..2686
                     /locus_tag="VGD38_20400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730457.1"
                     /translation="MSTTMGQGNMGANAGQGQSQTRSGEGQMMGRGGSEEGPIARTIE
                     QQTKKLPSDTFLWAALGSIGASALLRVMGKKNASLFVGEWVAPMLLFGVYNKIVKIQG
                     SDRNDRGH"
     gene            complement(2758..3954)
                     /locus_tag="VGD38_20405"
     CDS             complement(2758..3954)
                     /locus_tag="VGD38_20405"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004024 - alcohol dehydrogenase activity,
                     zinc-dependent [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030554 - adenyl nucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase"
                     /protein_id="HEY0730458.1"
                     /translation="MRAHCWYGKNTTRVEDVPEPQILNQRDAIVKISSTAICGSDLHL
                     YNGFIPTMQKGDILGHEFMGEVVEVGREVTNLRVGDRVVVPFPISCGNCFFCKGEMYS
                     LCENSNPNAWMAEKMFGHSASGIFGYSHLTGGYAGGQAEYARVPFADVGPIKVPDHLS
                     DEQVLFLSDIFPTGYMGAELCDIKPGDTIATWGCGPVGQFSIRSAFLLGAERVIAIDE
                     TPERLRMAEQGGAETINFREQNVYEALMDKTGGRGPDACIDDVGMEAHGPVGVFAYDR
                     LKQAMMLETDRPIALREAIMCCRNGGTVSIMGVYGGLVDKFPLGSIMQRSLTIKTGQA
                     HVQRYMRPLLEAIESGAIDPSFVITHTVSLEDAPRAIELFKHHQDGCIKVVLKPGMNG
                     SNETVQ"
     gene            complement(3955..4998)
                     /locus_tag="VGD38_20410"
     CDS             complement(3955..4998)
                     /locus_tag="VGD38_20410"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEY0730459.1"
                     /translation="MSATQPFSDETSYAGERSEPGMPKSGPKRLARGLGWFSLGLGLT
                     ELLAPKLIANISGVPNARTGLIRLYGLREIASGVMIFSQKEPATGLWSRVAGDALDLA
                     SLGAAFSSPGANRGRVAFATANVLAVTALDLIAAKQLSTDSPGVHAQASCRVNRSPDE
                     VYRFWRAFENLPRFMKHLDSVDDLGDGRSRWTATGPAGLEVEWEATIIADVPGEVITW
                     RSLENADVDNAGAVRFERAPGDRGTIVKVNIQYNPPAGVVGATVAKLFGEEPEQQLND
                     DLRRFKQVLEVGEVVVSEATLFGTGYFAQRPARPADVDELEEAESMESLPSQTGTNYD
                     EPATNYRRAGGGV"
BASE COUNT         1203 a         1557 c         1409 g         1078 t
ORIGIN      
        1 cccgaaccaa cagattatga gtctgctgct ctaaccgttg agctacaggg gcacaagcct
       61 cgactccgaa tagtgagggc gtcgagcgac ctcagtcgtg tgacctgttg agtgtatcac
      121 gcgcttatcg ggatgctgca aagcgccgac cggaagcggc aaagcgccgc gacaacacag
      181 ccggagctag caagcgcagc aacagtttct ccgctccaca cccgactctc cgctcctcac
      241 tcccccgacc gtcacgaaag ctttcgctac aagacaacat ttaatctcaa cgtacgacat
      301 cgtaccgaac tgtactcaca cttctcctac cttcgcctca cacaaacaac ttgaatcaag
      361 cgcgtgcgat gcgtcgaagt gtctcgtgtc ggcgcgtggt aaggagatac atgactctcg
      421 acatactgaa agaaaaggga atacccctcg acaaacaacg gttcacctgg cgtgagctcg
      481 ttcaaacccc gaccagcaaa ctcgacgatg atgcgttcac acgcgtgcgc atcatcctca
      541 tgaacggcct cgaatcagac gcgctccgca ccaagcacgc gatggcccgc atgctcaacg
      601 gcgacatgcg cctgccactc gccgaggtga gacgcgtcga gcaacaccag caaaccatgg
      661 tcaactggct cttgcccgcc gacctgtcgc caatcgaaac cacgatcgct ttcgaacaag
      721 tcgctatcga agtcaccgcc agcgtcgcgc agcacgaacc agacgaatac ctcgcccagg
      781 tttatcgctt cggactactc gaagacttcg atcacttgta tcgcttctcc gcgctcatgg
      841 atcgcgtgat gggcgctgac gccaacaaca ttattcagaa ttattccgac gtcatgcccg
      901 ggcggccaac gatggtcgaa catcgcgcgc ccgaagacga cctacgcaat cattacgact
      961 gtactaccgc cgatccgctg accaagattc acgccgccac gatcacggcc gcggagaatc
     1021 aaacacacga ctactacatg accatcggcc cgatgttcgc cgatccaatc gcgcgccagc
     1081 tttacgccga gatcgcgtcg atcgaagagc aacataccac gcagtatgaa tccctcctcg
     1141 atccaaacga aacaccgctc gagcgctggc tgctgcacga agcgatggag gtttacaact
     1201 acttcggctg catgcagtac gaaaccaatc cacgcatcaa gcagatttgg gaacgcttct
     1261 gcgactacga actcggacac ctgcacatgg tcatggagat gatgaagaag tttgaaaagc
     1321 gcgatcccgc cgaactactg ccacaaacgc ttcccgaagc aatcgaatac gacagtcacc
     1381 gccagtttgt acgtgagacg ctgaacgcgg aagtggattt gcgtgcagcc ggaacacagt
     1441 tcattcacaa agatgaagaa ccgagtcgcg cgccgcgatc gatcgagtac cgcgaacaga
     1501 tgaactccga aggttcgcca tcggaaatcg tagcggccgg ttacaactgg acgccgggaa
     1561 cagagttgat cgaaaagaag agcgtgtttg ctaaaggagc ctcagcatga gtacagcagc
     1621 aaaaatgact ggtaatcgca cgggcattca aacttcgccc gagcttgcgg aagagttgat
     1681 cgagggagcc gttaacgcga ctccgagttc cgaaggtgat gccctcgaga tcgcggaatc
     1741 tcgcggcgag tacatcagcg aaggttacat gctcggttca atgccgctcg tgcccgcgtc
     1801 tgacgaagct gaagctgacg aagacgaagt cgggatggcc gtgttgttgg acaagctgag
     1861 cgaacgactc gcgttcgaac gcatgggaac acgtctctac gaagcgttgc gcaacaaatg
     1921 cgagatgctc ggcgaagtgg ctcccggccc gacgctcgag gagatcgatc agatcggacg
     1981 cgaagagttg gaacacttcc tgctgctcaa cgacaccatc gcgggtctgg gtggcgatcc
     2041 gacactccag agtccgtgcg cggacgctat cggcgtcgcg tcgatgggta tcgtgcaggt
     2101 gctaacggat ccgcgaagtt cgatggcgca ctgcctctcg gcaatgttaa cagcggaact
     2161 taccgacaac gccggctggg aattgttgat caagctcgcc gacaacctcg gctacgacga
     2221 aatgaagacg gagtttgaag gagcactcgc agacgaggaa cgacacttgc tcaacgttcg
     2281 cacgtggttg tcggaatgcg ttctcgacag cgcagaagtt taataattca gttcatacca
     2341 ggggaggaaa caaatgagta ccacgatggg tcaaggcaac atgggcgcca atgcaggaca
     2401 gggccaaagc caaacgagaa gcggcgaggg tcaaatgatg gggcgcggcg gatccgagga
     2461 aggtccaatc gctcgcacca tcgaacaaca aacgaagaaa cttccgtccg acacgtttct
     2521 ttgggcggcg ttgggttcga taggcgcttc cgcgttgcta cgcgtgatgg gaaagaagaa
     2581 cgcaagcctg tttgtaggtg agtgggttgc gccgatgctg ttgtttggcg tgtacaacaa
     2641 gatcgtgaag attcagggtt ctgaccgcaa cgaccgcgga cactaaattt cattttttaa
     2701 aagccatcca cggattacac agacaatccg cgtaatccgt ggatggtttt gttttggtta
     2761 ttgaacggtc tcgttactgc cgttcattcc cggtttcagc acaaccttga tgcagccgtc
     2821 ctgatggtgc ttgaacagct cgatggctcg aggcgcatct tcgagactta cagtgtgagt
     2881 tatcacgaag ctcgggtcga tagcaccgct ctcaatcgct tccaacagcg gccgcatgta
     2941 ccgttgcacg tgtgcctgcc cggtcttgat tgtcagcgaa cgctgcatta tcgagccgag
     3001 cggaaacttg tccacgaggc ctccgtagac gcccatgatt gaaaccgttc caccgttgcg
     3061 gcaacacatg attgcctcgc gtaacgcgat cgggcgatcg gtttccaaca tcattgcctg
     3121 cttgagccgg tcgtaagcaa aaacaccaac aggaccgtgg gcttccatgc cgacgtcgtc
     3181 gatgcacgcg tcaggtccgc ggccgccggt cttgtccatc aacgcttcgt acacgttctg
     3241 ttcgcggaag ttgattgttt ccgcgccgcc ctgctcagcc attcgcaggc gttccggcgt
     3301 ttcgtcaatc gcgatcaccc gctccgcgcc caacagaaac gcactgcgaa tcgagaactg
     3361 tcccaccggg ccacaacccc aggtcgcgat cgtatcgccg ggtttgatgt cgcacagctc
     3421 cgcgcccatg taaccggtcg ggaaaatgtc agacaagaac agcacctgct catccgacaa
     3481 atgatccggc actttgatcg gcccgacgtc cgcaaacggc acgcgcgcgt attcagcctg
     3541 gccgccggca taccccccgg ttaaatgcga ataaccaaaa atacccgacg ccgaatggcc
     3601 aaacatcttc tcggccatcc acgcgttcgg gttcgagttt tcacacagcg aatacatctc
     3661 tcccttgcag aagaaacagt tgccgcacga gatcggaaac ggcacgacaa cgcgatcacc
     3721 gacccgcagg ttcgtcactt cgcggccgac ttcaaccact tcgcccatga actcatgacc
     3781 gaggatgtcg cctttctgca tcgtgggaat gaacccgttg taaagatgca gatccgatcc
     3841 acaaatcgcc gtcgagctga tcttcacgat cgcgtcgcgt tgattgagaa tctgcggctc
     3901 gggaacgtct tctacgcgcg tggtgttttt tccataccaa caatgtgctc tcatttacac
     3961 ccctcctccc gcgcgtcgat agttagtcgc cggttcgtcg taatttgtcc ccgtctggct
     4021 gggcaaagac tccatcgatt ccgcttcttc gagttcgtcg acgtccgccg gccgtgctgg
     4081 tctttgtgcg aaatagccgg tgccaaagag cgtcgcttcg gacacgacca cttcgccgac
     4141 ttccaacacc tgtttgaaac ggcgcagatc gtcgttcaac tgctgctcag gttcttcgcc
     4201 aaacagtttc gcgactgtgg cgccgacaac acccgcgggc gggttgtatt gaatgttcac
     4261 tttcacgatc gttccgcggt cgcctggcgc cctttcgaag cgcactgcgc ctgcgttgtc
     4321 gacgtctgcg ttctcgagtg aacgccacgt gatcacttca ccgggcacgt cggcaatgat
     4381 cgtggcttcc cattcgactt ccagtcccgc cggtcctgtt gctgtccagc gcgagcggcc
     4441 gtcgccgaga tcgtcgactg agtcgagatg tttcatgaag cgtggcagat tttcgaaagc
     4501 tcgccagaaa cgatagacct cgtccggcga tcgattgact ctgcaactgg cctgggcgtg
     4561 aacgcccgga ctgtcagtgc tgagttgttt agcggcgatc agatccagcg ccgtgactgc
     4621 gagcacgttc gctgtggcga aagcgacgcg gccgcggttt gcgcccggcg acgagaacgc
     4681 ggcgccgagg ctcgcgagat ccagcgcgtc acccgcaacg cgtgaccaaa gtcccgttgc
     4741 tggttccttt tgactgaaga tcatgacgcc ggatgcgatt tcgcgcaggc cgtacagtcg
     4801 tatcaaaccc gtgcgtgcgt ttggaacacc cgaaatgttc gcgattagtt ttggagccag
     4861 aagctctgtc agaccgagac cgagactgaa ccagccaagc ccgcgtgcga ggcgtttagg
     4921 acccgacttg ggcatgcctg gttcggaccg ctcaccggcg tagctggttt cgtccgaaaa
     4981 tggttgtgta gcgctcatac ttgtatgtcc cccttgaatg gaatttgttg ctttggttta
     5041 ttcggttctt tggaaatcca aaacaaacac catgcctgaa gagtgtgcca tttgatgccc
     5101 ctgcgcatca cgaaatgctg gcaaactttt gagacacatt gctggcaact ttcgacatcg
     5161 ccccgataca actcagcgct taaacctcgc ccgaagaccg tttgtccact ttttggaggc
     5221 ttcgatgaaa ctgcttctta gtgtgtg
//
LOCUS       DASWTX010001342         2654 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_280398, whole genome shotgun sequence.
ACCESSION   DASWTX010001342 DASWTX010000000
VERSION     DASWTX010001342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2654
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280398"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2654)
                     /locus_tag="VGD38_20415"
     CDS             complement(<1..>2654)
                     /locus_tag="VGD38_20415"
                     /inference="COORDINATES: protein motif:HMM:NF024603.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HEY0730460.1"
                     /translation="FMPRTVKAITGTVTEQLNSGGTKPLANVTVIITGNTASGPRAVM
                     ARTAANGQFGTIDLVAEADSIVIEATDTLGRKKTAVATPFLNFSPSQYPGLNGLNSMF
                     SSIVFPSSEGLPETLPALLRTEGRMLDLADGQVDTLQAFGRVGVGSHVQVTVHATPDV
                     KTITGKLMVSGATRRELIWRNPNPGSGSYETDFTVDGEGAYTVAVTTYTQANVENTKA
                     TTNFSFIGLSNPNTRPSIPGVPFVLSVTPRDQAQQIDSGTRVHLEFSEPVKNLVPGST
                     VYLTEQGSSTQLGGTILSGGIPVGPGTPNISSIDFIPSRGLQGGKTYTVHVTTDVLDS
                     ENEHLDQSPDDLAAKPFTSTFSTFQGLVLTTEPPQDSSFRIAALGDLAATITTDFSTS
                     SGSTLTVYNMSDPQHPEVVSRTFVPQRAIGIAMAEIAPEDTFAVNNPPSTIIVITTIS
                     HPDLQRANNLWVYSVDAPERPERIGAVSLSFPSRISEFPSNLTIHRKRAYIGNTGTGG
                     VLVVDLEAAIRKYQEVGAAAATLAAIFPDKGFNFEAQRQKAKYGSSATASSPIMAASV
                     IDQIVVADQPAEPVAYVASNRPQLISFRLGETFDGRLNFLDTPPLNGFDDRVLTMTDL
                     NPAGFALDLRAVPRVVVGGTEKDLALLLGQTRLWIYDVTNPAAPQYLSSPLFTDLGGP
                     SDYARRIEVEGTLAYVMFSDSVLVIDFHDPANPIISSTITGIGTNLRWLAVKDGFVYT
                     LSGEGRLNVSIGRAASLVLVHGHDANATQTCGNPVVIDRQTRRMAQSAEVFFQVFGHD
                     APQSAKVIIRKTTIVGNQSQDTTLATLSPTLSAAIPNVVVGSAIWPPLADPIDPAATY
                     TAEVVLDESGSNEFHSRRDASPFSVLID"
BASE COUNT          579 a          719 c          794 g          562 t
ORIGIN      
        1 gatcgatcag gacactgaaa ggactcgcgt cacggcgtga atggaattca ttactaccgc
       61 tttcgtccaa aacaacttcg gctgtgtagg tcgccgcagg atcgatcggg tccgcgagcg
      121 gcggccatat tgctgaacca actacgacgt tggggatcgc ggcgctcaga gtaggagaca
      181 gtgttgccag cgtggtgtcc tgagactgat taccaacgat ggtcgtcttc ctgataatga
      241 cctttgcgct ctgtggcgcg tcgtgaccga agacctggaa gaagacttcg gctgactggg
      301 ccatgcggcg tgtttgccga tcgataacta cgggattgcc gcaggtctgc gttgcattcg
      361 cgtcatgacc gtgaacgaga accagcgacg cggcacggcc gatggaaaca ttcagacgtc
      421 cctcacctga aagcgtgtaa acaaaaccat ccttaaccgc cagccagcgg aggttggtgc
      481 cgatcccggt gatggttgag gaaatgatcg ggttcgccgg atcgtggaaa tcgatcacga
      541 gcacggaatc gctgaacatg acgtaggcga gcgtgccctc gacttcgata cggcgggcat
      601 agtcgcttgg accaccgaga tcagtgaaca acggagacga gagatattgc ggagcggcag
      661 gattggttac gtcataaatc cacagccggg tttggcccaa cagcagagcc aggtcctttt
      721 cagttccgcc taccacgacc ctcggcaccg cacgcaagtc gagcgcaaaa cccgccgggt
      781 tgagatccgt catcgtgagc acgcggtcgt cgaaaccgtt cagcggcggt gtatcgagga
      841 aattgagtct gccgtcgaag gtttcgccaa ggcggaaaga aatcagttgc ggcctgtttg
      901 aagccacgta agcaaccggt tcggccggtt gatccgcgac aacgatttga tcgatcaccg
      961 aggccgccat gatcggcgag gaagccgtgg ctgaactacc gtacttcgct ttttgtcttt
     1021 gggcctcgaa attgaacccc ttgtcaggaa agatcgcggc gagcgttgcc gcagcggctc
     1081 cgacttcctg atacttgcgg atcgccgctt caaggtcgac aacgagtacg ccaccagttc
     1141 cggtgttgcc gatatacgca cgcttgcgat ggatagtcag gttggacgga aactccgaga
     1201 tcctgctcgg gaatgaaagc gaaacagctc cgattcgttc gggccgctct ggcgcatcga
     1261 cactgtagac ccagagattg tttgcgcgtt ggaggtccgg atgagaaatg gtcgtaatga
     1321 caatgatggt cgatggagga ttgtttacag caaacgtgtc ctccggagct atctccgcca
     1381 ttgcgatgcc gatggctcgc tgcggtacaa acgtgcgcga aacaacttcc ggatgctgcg
     1441 gatcgctcat gttatagacc gtcagcgttg aaccactcga agtgctgaag tctgtagtga
     1501 tggtcgcggc cagatcgccg agcgccgcta tgcggaaaga cgagtcttgc ggcggctcgg
     1561 tagttaacac caatccctgg aaagtgctaa aggtgctcgt gaatggttta gccgcgagat
     1621 cgtcgggcga ctgatcgaga tgctcgttct cgctgtctaa aacatcagtc gttacgtgga
     1681 cggtataagt cttaccgcct tgcaagccac ggctcggaat gaaatcgatg ctcgagatgt
     1741 tgggcgtacc tggaccaacc ggaataccac cggacagaat cgtgccgccg agttgcgtgc
     1801 tgcttccctg ctccgtcagg taaacggtgg aaccgggaac cagattctta accggttccg
     1861 aaaactccag gtgaacgcga gtgccgctat caatctgttg tgcctgatcg cgcggcgtca
     1921 cactcagaac gaaaggcacg cctggaattg acgggcgcgt attcggatta ctgagaccga
     1981 tgaaactgaa gttagttgtc gcctttgtat tttcgacatt agcctgcgtg taggttgtta
     2041 cagcaaccgt gtacgcacct tccccgtcga ccgtgaaatc ggtttcgtac gaacccgaac
     2101 ccggattcgg gttacgccaa atcagctcac gccgcgtcgc accgctcacc atgagtttgc
     2161 cggtgatggt cttcacgtca ggtgtggcat ggaccgtcac ctgcacgtgc gaaccaactc
     2221 ccacgcgacc gaacgcctgc agcgtgtcga cctggccgtc cgcaaggtcg agcatccggc
     2281 cttcagtgcg cagcagtgcc ggcagagttt cgggcaggcc ctcgctcgac ggaaagacga
     2341 tcgatgaaaa catcgaattc aatccgttca aacccggata ctgagacgga ctaaagttaa
     2401 ggaaaggcgt tgcgaccgca gtcttctttc ggcccaatgt atctgtggct tcgatcacga
     2461 tcgagtcggc ttcggcaacg aggtcgatcg taccgaactg gccgttggcc gcggtcctgg
     2521 ccataacagc gcgtggacca ctagccgtgt tgccggtgat gatcacggtg acgttggcga
     2581 gcggcttggt gccgccgctg ttgagttgtt ccgtgactgt gccggtgatt gctttgacag
     2641 tgcgaggcat gaag
//
LOCUS       DASWTX010001343         2999 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_146823, whole genome shotgun sequence.
ACCESSION   DASWTX010001343 DASWTX010000000
VERSION     DASWTX010001343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2999)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2999)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2999
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146823"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2058)
                     /locus_tag="VGD38_20420"
     CDS             complement(<1..2058)
                     /locus_tag="VGD38_20420"
                     /inference="COORDINATES: protein motif:HMM:NF019130.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046559 - alpha-glucuronidase activity
                     [Evidence IEA];
                     GO_process: GO:0045493 - xylan catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucuronidase family glycosyl hydrolase"
                     /protein_id="HEY0730461.1"
                     /translation="MQTVRADDGYRLWLRYDPLPSRALNTYRQQLKSISVQGESATFE
                     VIRDALRVGCTGLLGAPVDVGSGDDGSVVVGLPETSALIRKQRWDAELKRLGPEGYRI
                     RTVREGNRNVVLVASATDVGALYGTFHFLRLLQTEQAIGSLQIDQQPALKLRLLNHWD
                     NLDRSIERGYAGKSLWNWEELPGRVDPRLTDYARVNASIGINGSVLNNVNASSEFLTA
                     KYLDKVAAIANAFRPYGIRVYLSARFSAPIELSGLKTADPLDPAVKAWWKQKSNEIYK
                     VIPDFGGFLVKANSEGQPGPRTYGRTHVDGANMLAAAVAPHNGIVMWRAFVYDMKPGY
                     DRAGAAYENLQPFDGKFAPNVLLQVKNGPIDFQPREPFHPLFGGMPRTQVMPELQITQ
                     EYLGFSNHFVFLAPMWREFLDSDTYARGHGSTVSRVADGSLYRQRLTGIAGVANTGTD
                     RNWSGHHPLQANWYAFGRLAWNPRLGSKEIAKEWTVMTLTHDPATAVAIMRMMLESHE
                     AVVNYMTPLGLHHLFWGGHHYGPAPWWDTEKRDDWNPTYYHKADASGIGFDRTKTGSN
                     TVSQYHLPVRRQFSNLDQCPEKFLLWFHHVSWDHKMKSGRTLWDELALHYQAGVDWVR
                     ATRATWAKLNKAIDADRHEAIAQKLAIQERDAVWWRDACLLYFQTFAKRPLPSGVEPP
                     AHTL"
     gene            complement(2090..>2999)
                     /locus_tag="VGD38_20425"
     CDS             complement(2090..>2999)
                     /locus_tag="VGD38_20425"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY0730462.1"
                     /translation="QIAQIVFLVCVICGQVSGQTSSDRWIDYAGADVDIFPNVTYAKA
                     NNIELKLDLYLPRNRTTPKPTLILFHGGGWVDGQKERNVLYLLPFLSMGWAAVNVEYR
                     TGHQSPAPAAVEDARCALRWITNRAREYALDSSKFVLTGTSAGGHLSLITGMLPANTV
                     FDRQCTVEGGARWNSAAVPELKVAAIVNWFGIGDVADLLEGPNAKNYAREWFGSMSNP
                     EQLAKQLSPVNYVRAGLPPIITIHGEHDDVAPYSHAVRLHEMLEKAGVPNQLVTIRGR
                     KHGGFSREEMMDSYAKIREFLRKNGI"
BASE COUNT          656 a          875 c          816 g          652 t
ORIGIN      
        1 gagtgtatgt gccggcggtt caacgccgga cggcaacggg cgctttgcga aagtttgaaa
       61 gtagagcaag cacgcatcac gccaccagac ggcgtcgcgt tcctggatgg cgagcttctg
      121 cgcgatcgct tcatgccggt cggcatcgat tgctttgttt agcttggccc aggttgcgcg
      181 agtcgctcta acccaatcga cacccgcttg atagtgcaac gccagttcgt cccagagtgt
      241 gcggccggac ttcattttgt gatcccacga gacgtggtga aaccacagca ggaatttttc
      301 aggacattga tcgagattgg aaaactggcg gcgcaccggc aagtgatatt ggctcactgt
      361 gttgctgccc gtcttcgttc gatcgaaacc aatcccggat gcatctgctt tgtgataata
      421 ggtagggttc cagtcgtcgc gtttttccgt gtcccaccac ggcgcaggtc cataatgatg
      481 cccgccccag aacaggtgat gaagaccaag cggcgtcatg tagttcacga ccgcttcgtg
      541 tgactcgagc atcatacgca tgatcgcgac cgcagttgcg gggtcgtgcg tgagtgtcat
      601 cacggtccat tccttcgcga tctcttttga cccgagacgc gggttccagg cgaggcggcc
      661 gaaggcatac caattggcct gcaacggatg atgaccgctc cagttgcgat cagttccggt
      721 gttcgcgacg ccggcgatgc cggtcaaacg ttgtcgatag agcgaaccgt ccgcgactct
      781 gctgacagtc gagccatgcc cgcgcgcata agtgtctgag tccaagaact cacgccacat
      841 cggcgccaga aaaacaaagt gattcgagaa gccgagatac tcctgcgtga tttgcagttc
      901 cggcatcact tgcgtgcgcg gcatgccgcc gaagagcgga tgaaacggct cgcgcggctg
      961 gaaatcgatc ggtccattct taacctggag caaaacgttc ggcgcgaact tgccgtcgaa
     1021 gggctggagg ttttcgtaag ccgcaccggc gcggtcgtaa ccgggtttca tgtcgtaaac
     1081 aaacgcgcgc cacatcacga tgccgttgtg tggcgccacc gcggcggcga gcatgtttgc
     1141 gccgtcgacg tgcgtgcggc cgtaagtgcg tggtccaggt tgtccttcgc tgtttgcttt
     1201 gaccagaaag ccgccgaagt cggggatcac tttgtagatt tcattggact tctgcttcca
     1261 ccacgccttc acggctggat cgagcggatc cgcagttttc aacccgctta gctcgatcgg
     1321 cgccgagaac cgtgccgaga ggtagacgcg aattccgtac gggcggaacg cgttcgcgat
     1381 cgcggcgact ttgtcgaggt acttcgccgt cagaaactca gaactggcat tgacgttgtt
     1441 cagaactgaa ccgttgatgc cgatggaagc attgactctt gcgtagtcag tcagccgcgg
     1501 atcgacacgt ccgggaagtt cttcccagtt ccacaaagac ttacccgcat aacctcgctc
     1561 gatacttcgg tcgagattgt cccagtggtt aagcagacgt aacttcaaag ccggttgctg
     1621 atcgatttgt aaactgccga ttgcttgttc ggtttgcagt aaacgcagga agtgaaacgt
     1681 tccgtacaac gcgccaacgt ctgtcgccga agcaacgagg acgacgtttc gattcccttc
     1741 tctgaccgtg cgaatgcgat aaccctctgg tccaagccgc ttcaactcag cgtcccaacg
     1801 ttgcttgcga atcagtgcag aagtttcagg aagtcctacg acgactgaac cgtcgtcgcc
     1861 agatccaaca tcaacagggg cgcctaaaag tcccgtgcaa ccaacacgca gtgcgtcacg
     1921 gataacttcg aacgttgctg attcaccctg caccgagatc gacttgagct gctgcctata
     1981 agtgttcaat gcccgcgatg gcaacgggtc gtagcgcaac caaagccggt agccgtcatc
     2041 cgcccggacg gtctgcaaga aggaagatac gcagacgaac agcgcgaagc taaatgccgt
     2101 tcttccgaag aaattcacgg atctttgcat agctgtccat catttcctca cggctgaatc
     2161 cgccgtgctt ccggcctcgt atcgtcacca actgattcgg caccccggcc ttctccaaca
     2221 tctcatgcag tcgaaccgcg tggctgtacg gcgcgacatc atcgtgctcg ccatgaatcg
     2281 ttatgatcgg cggcagtcca gcgcgtacgt aattgaccgg cgagagttgc ttcgcaagct
     2341 gttcggggtt gctcatactg ccaaaccatt cgcgcgcgta gttcttcgca ttcggacctt
     2401 ccagcagatc ggcaacgtcg ccgataccaa accagttaac aatcgctgcc actttcagtt
     2461 ccggaacagc cgcactattc caacgcgccc cgccttcaac cgtacattgc cgatcgaaga
     2521 ccgtgttcgc cggcaacatg cccgtgatca gtgacagatg accgccggca gacgtccccg
     2581 tcaaaacaaa cttcgacgaa tcaagcgcat actcgcgcgc gcggttcgtg atccatctca
     2641 atgcacaacg agcgtcttca acagccgccg gcgccggcga ctggtgcccg gttcgatatt
     2701 caacattcac agccgcccaa cccatcgaca gaaagggcag caggtaaaga acgttgcgtt
     2761 ccttctgtcc atcaacccag ccgccgccat gaaaaagaat cagtgtcggt ttcggggtgg
     2821 tcctgttcct ggggagataa agatcgagtt ttagctcgat gttgtttgct ttcgcatagg
     2881 tgacgttcgg aaagatgtcg acgtcggcac cggcataatc gatccaacga tcagaactgg
     2941 tctgtccgct tacctgtcca cagattacgc aaaccaagaa aacaatctgt gcaatctgt
//
LOCUS       DASWTX010001344         3228 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_280437, whole genome shotgun sequence.
ACCESSION   DASWTX010001344 DASWTX010000000
VERSION     DASWTX010001344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3228
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280437"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1714)
                     /locus_tag="VGD38_20430"
     CDS             complement(<1..1714)
                     /locus_tag="VGD38_20430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730463.1"
                     /translation="MPDVEPAPVPAPAPTPVCNRTIKADVVALDQAIMYNRLGAVNPG
                     GMIYALKQDVVAIDPARGLVAGNVKLRADKRPRPIALRMNSGDCLRITFTNLLSPSPL
                     SDQPATRSAGVHVIGMELVNGISSDGSNVGTNPASLVGPGASTVYTFFATREGNNLMY
                     STGATTSGEGDGGTLAEGLFGSVNVEPLGAEWYRSQLTQEDMKLAQTGTTPGGQPILN
                     YDAVYPVGHPKAGKPIMRMLNGDTIVHTDLNAIITGPNKGRFPAGTFKPNQTEPDRER
                     PFREFTVIYHDEIKAIQAFPQFQDPVLKHTLHSVRDGFAINYGVAGAGAEILANRLGV
                     GPMFNCTECKFEEFFLSSWTIGDPAQIVDVPANTTDANGNLIPGRKANRVLYPDDPSN
                     VHHSYLGDPVKMRVVHAGPKEHHVHHLHAHQWLQTPDDDNSTYLDSQSLGPGYAFTTE
                     IVHGGTGNRNQAVGDSIFHCHFYPHFAQGMWELWRAHDVFETGTVLDAKGIPVPGSRA
                     LPDGEILAGTPTPAIVPLPTLAMAPMPTAALPGYPFFVPAVAGHRAPKPPLDTIDDGG
                     LPRHI"
     gene            complement(2255..3034)
                     /locus_tag="VGD38_20435"
     CDS             complement(2255..3034)
                     /locus_tag="VGD38_20435"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY0730464.1"
                     /translation="MPHELIESELFGYKRGAFTGADRDKRGLMEAASGGTLLLDEIAE
                     MPAHLQTKLLRVLQERKLRRLGDEREINVNFRLVSATNRDTAALLQQGDLREDLYFRI
                     STIRIKVPPLRERLDDLPLLAKHFLDRFNLQYDKDIREISEATISRLIQYHWPGNIRE
                     LESVIERAVLFCSGHKLAPECLPEQFQPQHFTNFRFVIPPLVPLEEIERAAIEQTLER
                     TSGNIRRSAQILRCPRPTFYRKLKKFGIKVSRPSGSTNGPH"
BASE COUNT          650 a          864 c          969 g          745 t
ORIGIN      
        1 tgatgtgacg cggcaaacca ccgtcgtcga tcgtgtcgag tggcggcttc ggcgcgcgat
       61 ggcctgcgac tgccggaacg aagaatggat aaccgggcag cgccgctgtc ggcatcggag
      121 ccatcgctaa agtcggtaac ggcacgatcg cgggggttgg tgtgcccgcc aggatttcgc
      181 cgtcaggcaa agcgcgggag ccggggaccg gaatgccttt ggcatccagc actgttcccg
      241 tttcaaaaac atcgtgtgcg cgccacagtt cccacatgcc ttgcgcgaag tgtggataga
      301 agtggcaatg gaagattgaa tcgccgacgg cctggttacg gttgcccgtg ccgccgtgaa
      361 cgatttcggt agtgaacgca tagcctggtc caagactctg gctatcgaga tatgtcgagt
      421 tgtcgtcgtc tggtgtttgc aaccactgat gcgcgtgcaa gtggtgaacg tgatgttcct
      481 ttggtcccgc atgcaccact ctcatcttca cggggtcgcc gagatagctg tgatgcacgt
      541 tggaaggatc gtccgggtac aggacccggt tcgcctttct tcccggaatc aagttgccgt
      601 ttgcgtcagt ggtattggcg ggcacgtcca ctatctgtgc cgggtcgccg atggtccatg
      661 acgacaggaa gaactcttca aacttgcact cggtgcagtt gaacatcggt ccgactccga
      721 gccggttggc caggatttcg gcgccggcgc cggcaacgcc gtagttgatg gcgaaaccgt
      781 cgcgcacgct gtgcagggtg tgtttgagaa ccggatcctg aaactgcgga aaggcctgaa
      841 tcgctttgat ttcatcgtga tagatcacgg tgaactcgcg gaacggccgt tcgcgatcgg
      901 gttcggtttg atttggcttg aaagtcccag ccgggaaacg tcccttgttt ggaccagtaa
      961 tgatcgcgtt gagatcggtg tgaacaatcg tatcgccgtt cagcatcctc atgattggct
     1021 tgccggcttt ggggtgtcca accggataca ctgcgtcgta gttaagaatc ggctggccgc
     1081 ccggcgtggt tccggtttgc gccagtttca tgtcttcctg agtcaactgc gagcgatacc
     1141 actcggcgcc tagcggctcg acgttaacgc tgccgaataa accttccgcc aacgttccgc
     1201 cgtcgccttc accgctggtg gtagcgccgg tgctgtacat caagttgttt ccttcgcgcg
     1261 tggcgaagaa ggtgtagaca gtggaagctc ctgggccaac gaggcttgcc ggattcgttc
     1321 ccacgttcga tccgtcagag ctgatgccgt tgaccaattc catgcctatt acgtgtacgc
     1381 ccgccgatcg tgtggctggt tgatcgctga gcggcgaggg agacaagaga ttggtgaaag
     1441 ttatccgcaa acagtcgcca ctattcattc tcagggcgat gggccgcggc cgcttgtcag
     1501 cgcggagttt cacgttgccg gcgacaagcc ctcgcgcggg atcgatcgcc acgacgtcct
     1561 gcttgagcgc gtaaatcatt ccgcccggat tcactgctcc gagacggttg tacatgatgg
     1621 cctggtccag tgcgactaca tcggccttga tggtccgatt acaaactggt gtaggagccg
     1681 gtgccggaac tggcgccggc tccacgtccg gcaatctaaa ttgggcttga gcgctcatcg
     1741 cgctcaacag caatacgagg gatgacaaca gcagaaagga gagcgtcctc ctttggtggg
     1801 ttttatgtgt gcttttcatc ttccgttcct ccgaataaat cgggaatgac cttggaccat
     1861 gtccgagtcg agcgactcga gtagacttgc aagagacgtt gcaatagcca tgccttcgta
     1921 cagatggtcc atattcgcgt tgctgtaggg ctttgcacaa aactcgaaca cgggcacgtc
     1981 ttgaggttga actccaacgg agttctcaaa tgtcagccca gggttgcttc aaccctgggt
     2041 atcaataaac cgaacagaat caactccgaa ggagttcgcg aacgctttca gcgttgaatg
     2101 ctccacctgc caaacccagg gttggaaacc caaccctggg ctgaaattcg cgaacgcctt
     2161 cggcgttttg agtttttgtg caacgccttt tgtcgaggtg gaggacgaag aagaaactat
     2221 gtctcagagt gaggccatga acgagacgta tgattcagtg tggaccattg gtcgaaccgc
     2281 tgggcctgct gactttgatt ccaaactttt tgagtttgcg atagaaggta gggcgcgggc
     2341 agcgaaggat ctgcgcgctt cgtctgatgt tgcccgaggt gcgttcgagt gtctgctcaa
     2401 tggcagcacg ctcaatctct tccagtggga ccaggggtgg aattacaaaa cggaaattgg
     2461 tgaagtgctg gggttgaaac tgttccggca gacattcggg cgcgagcttg tgacccgaac
     2521 aaaagagcac cgcgcgttcg atgacgcttt cgagctcgcg aatatttccc ggccagtgat
     2581 actgaatgag acgcgagata gtcgcttcgg aaatctcgcg aatgtccttg tcgtattgaa
     2641 ggttgaaccg atcgagaaag tgtttggcaa gcaacggaag gtcgtcgaga cgttcgcgca
     2701 acggcggcac tttgatccgg atcgtgctaa tgcgaaagta caaatcctcg cgcagatcgc
     2761 cttgctgcaa cagcgcagcg gtatcgcgat ttgtggccga gacgaggcga aagttgacgt
     2821 tgatctcgcg ttcgtcgccc aagcggcgta gttttcgttc ctgcaaaacg cgcagcagtt
     2881 tcgtttgcag gtgtgcgggc atttccgcga tctcgtcgag cagcagtgtt ccgccgctcg
     2941 ctgcttccat caatccgcgt ttgtcgcgat cggcgccggt gaacgcgccc cgcttgtatc
     3001 cgaacagctc tgactcgatg agctcgtgcg gtatcgccgt tcattcgtat caattgctcg
     3061 gcgataccgc gtaacttcgg atcgcagccg accatgccga acgtctcgct gtcggcgctc
     3121 aacgtgcgct tgagagtctg gttctcgtgt ttcaacgccg cgaactccag cgcacgatcg
     3181 accaaagtgc gcagccgatc gatcgcgtag ggtttctcga gatagtag
//
LOCUS       DASWTX010001345         5914 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_212016, whole genome shotgun sequence.
ACCESSION   DASWTX010001345 DASWTX010000000
VERSION     DASWTX010001345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5914
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212016"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(135..1316)
                     /locus_tag="VGD38_20440"
     CDS             complement(135..1316)
                     /locus_tag="VGD38_20440"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family peptidase"
                     /protein_id="HEY0730465.1"
                     /translation="MKKVFAFLVLAGLCATVLFTSPVRSQKKDKIRKSSHKVENNYIV
                     VLNDAVVGEHGRFSIAPYVADELALTHKGKIKHVYQNALNGFAVEMSPEDAERLSEDF
                     RVAYVEEDGVVSLDATQSNPPWGLDRIDQRNRPLNAIYTFNWTGAGVFAYVIDTGIRT
                     THTQFGTRAANVFDAFGGNGQDCNGHGTHVAGTIGGSTYGVAKSVNLRGVRVLNCSGS
                     GTNSGVIAGVDFVRLNRQNPAVANMSLGGGASSALDTAVNNLSNSGVAIAVAAGNSNT
                     NACNSSPARAANAITVGSTTTTDARSSFSNFGSCLDIFAPGSGILSAYSTSNTATATL
                     SGTSMASPHVAGVAALYKQANPSASAATVRNAIVNGATTNVVTNAGTGSPNRLLYSLF
                     F"
     gene            1896..3905
                     /locus_tag="VGD38_20445"
     CDS             1896..3905
                     /locus_tag="VGD38_20445"
                     /inference="COORDINATES: protein motif:HMM:NF017181.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY0730466.1"
                     /translation="MTRSPGLRTLLVSLVSLLLTLLPLGVSLGQNGRGDDAAALRSWI
                     ALDAPPGWEHLATDQIMKAMPGWRRDALGNLILRQGSGSPRRVVACGLDRVGFAVTEI
                     METGYLRLREAGSARQHPLWTQFHEGQRINVLTRTGAVPGVAIVKSTHLQRGRQANAP
                     VTTLEDVWVDVGATSRADVRTLGIEMLNPVVRDAVGWSYEGFVAGPSAGVRVGCAAVA
                     AAASGRVESGETIFLLTTLRSFGHDGLEAALRALGKVDQVTVVDQNSVSFPGLTAVNT
                     ITPRVRYAGSLVESVDVRDAESLLAEVTKAAGLDRGLIRWVALPEIAKPKPIGEDGVS
                     AMAGLLKSLADVPSVSGHEKPVREAVAAALPAWARSRTTTDKEGNLILEVGPDRDPVM
                     FIAHLDEVGFEVSNIAADGVVTLRARGGLFPSLWEGQPALLHFEDGKAPLRGVFVPRE
                     SATAKQPEAVTAWFGVDAARLKQLGVVNGLSVTAAKSATRLGATRFTARGLDDRAGST
                     ALILAARQIDPATLKRKVIFAWSVREETGLEGAMALAQRYATSIKRVFSVDTFVSSDS
                     PAETTRFAYAPLGQGAVIRGLDNASVAAPAELERILAIARAQRIPLQVGATNGGTDGS
                     DFIRYGTIHASLSWPGRYSHSPVEVLDLRDLQALERLVHALAIAP"
     gene            3902..>5914
                     /locus_tag="VGD38_20450"
     CDS             3902..>5914
                     /locus_tag="VGD38_20450"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GH92 family glycosyl hydrolase"
                     /protein_id="HEY0730467.1"
                     /translation="MKRIFILCVLLLSCAQVSAQQQDLTRYVNPFVGTAGHGHTYPGA
                     TRPFGMVQLSPDTRLTGWDGCSGYHYSDSIIYGFSHTHLSGTGISDYGDILLMPTVGK
                     VNLNALIDGSPEKGYASYFQHRNEKASPGYYAVQLDDDNIRVELTATERTGLHRYTFP
                     VTQEANIIIDLTHRDKVLDSGLRITGRDTIVGWRRSEAWAKEQIIYFAIQFSHPIIGS
                     GIAVDDKLVEGLREARGQNVKGYVRFYTGIGTEVLARVGISAVDTNGAWLNLAAESNH
                     KTFEKVRADAAAAWNAELNKITVTGGSTAQLTNFYTALYHTMIAPNLFIDVDGRYRGR
                     DMQVHTANGFQNYTVFSLWDTFRAAHPLYALIDQKRTRDFIKTFLVQYEQGGRLPVWE
                     LAANETDTMIGYHAVSVIADAAVKGIDGFDLNKAFEAMKQSAEFRQHHGLGPYIDNGF
                     IAMEDERESVSKVLEYAYDDWCIAQVARMLGRTEDYERYLARAQSYKNVFDPVSGFMR
                     PRTNGNWIEPFDPREVTFAFTEANSWQYTFFAPQDVSGLMKLMGGPRGFARKLDQMFA
                     AESRTTGREQVDITGLIGQYAHGNEPSHHIAYLYNYAGEPWKTQFRVRQIMDEFYKPT
                     PEGLIGNEDCGQMSAWYVFSAAGFYPVTPGSTIYAIGTPLFPEVRFK"
BASE COUNT         1166 a         1582 c         1907 g         1259 t
ORIGIN      
        1 aattgtgcaa agcagggaga cacttctttg gaacttcatt ggggctacct cacagttgta
       61 gggctaaaga caaaacgcgg atgacgcaga tcagagcaga tccgtgtcac ccgcgtcaac
      121 aaccgcaagg gcaattagaa gaacaacgaa tagagtagcc ggttcgggga gccggtgcct
      181 gcgttcgtca ccacgttggt cgtcgcgccg ttcacgatcg cattgcgtac cgtagcggct
      241 gacgccgacg ggttcgcctg cttgtaaagc gctgcgacgc ccgccacgtg tggcgaagcc
      301 atcgaagttc cactcaaagt cgcggttgcc gtgttcgaag tcgaatacgc ggacaggatt
      361 ccggagcctg gcgcaaagat gtccaaacac gatccgaaat ttgagaacga agagcgagcg
      421 tcggtggtcg tggtagatcc aaccgtgatc gcgttcgctg cacgagccgg cgaggagttg
      481 cacgcgttgg tgttgctgtt gccagccgcc accgcgattg ccacgcccga gttcgagagg
      541 ttgttaaccg ctgtgtcgag agcactcgaa gcgccgccgc cgaggctcat gttcgcaact
      601 gccgggttct gccggttgag gcgaacaaag tccacgcccg caatcacgcc ggagttcgtt
      661 cccgagccgg agcaattgag cacgcgcaca ccgcggaggt tcacgctctt cgcaacgccg
      721 taggtcgagc cgccgattgt tccggccacg tgcgtgccat ggccgttgca atcctgtccg
      781 ttgccgccga acgcgtcaaa cacgttcgcg gcacgtgtgc caaattgcgt gtgggtagtg
      841 cggatgccgg tgtcgatcac gtacgcgaac acacccgcgc cggtccagtt gaaggtgtag
      901 atggcattca acggacgatt gcgctggtcg atgcgatcga ggccccaggg cggattactt
      961 tgcgttgcat caagcgagac cacgccgtct tcttccacgt acgcgacgcg gaaatcctcg
     1021 ctcaggcgct cagcatcttc aggcgacatc tcgacggcaa aaccgttgag cgcgttctga
     1081 tagacgtgtt tgatttttcc cttgtgggtc agcgcgagct catcggccac gtacggagcg
     1141 attgagaagc gcccatgctc gccgacgacg gcatcgttga gtacaacgat gtagttgttc
     1201 tcaaccttgt gtgagctctt gcgaatttta tctttcttct ggctacggac gggtgacgta
     1261 aacagaacgg tggcacagag gcctgccaaa acaaggaacg cgaaaacttt cttcatactc
     1321 ttctcctcca gagagtaagt gggttgtggg ggaacgccgc ccgcatcggc gagaaatcca
     1381 gcgggtactt gcaccgggtc tcccaggtac acggtgaact gacatgaggt acaaagccag
     1441 atacatgaca cattccctac tgcgcacgta tgaactgaat ggatgaactg cgttttagtc
     1501 gttatgcagc gccgggtcgc actacgaacc aacttgggag aataccgttc ttgttttggg
     1561 agtactgtct gggacggagg ggcgcagtat accaccaatt tcgccaagcg caaggatttc
     1621 gtgtagtctg gtgtgccgtt ttgattttcg ggaacaataa cgccggaggc gttcgctagt
     1681 tgcagcccct ggttggagcg cagcgacaac catgggacac cgtccttacc acacgcgtaa
     1741 accctgaaag ggttcgccgc aagagaaacc ctttcagggt tgaatacctt atatttcttg
     1801 ttcccagggt tgaagcaacc cctgggctcg aattagcaaa cgccttcggc gttagagttt
     1861 tcaaactaaa agatgaacag tattgcccta cgctcatgac ccgctcccct ggacttcgta
     1921 cgttactcgt ctcgctcgtt tctttactgc taactcttct tccgcttggt gtttcgctcg
     1981 gtcagaacgg gcgcggcgat gatgctgcgg cgttgaggag ttggattgcg ctcgatgcgc
     2041 cgcccggttg ggaacatctc gccacggacc agattatgaa ggcgatgccg gggtggaggc
     2101 gtgatgcgct cgggaatttg atcttgcggc agggaagtgg aagtccgcgg cgcgtggtgg
     2161 cgtgtgggct cgatcgcgtg gggtttgcgg tcaccgagat catggaaacg ggttatctgc
     2221 ggctgcgcga agctggaagt gcgcggcagc atccgctttg gacacagttt cacgaaggac
     2281 agcgcatcaa cgtgttgacg cgaacgggtg cggtgcctgg tgttgcgatc gtgaagagca
     2341 cgcacttgca gcgtggacgg caggcgaatg cgccggtgac gacgctcgag gatgtttggg
     2401 ttgacgttgg cgccacttcg cgggcggatg tgcgcacgct ggggatcgag atgttgaatc
     2461 cggtggtgcg tgatgcggtt gggtggtctt atgaaggttt tgtggctggg ccatcggctg
     2521 gcgtgcgtgt tggttgtgcg gcggtggccg cggctgcgag tggacgggtt gagagtggcg
     2581 agacgatctt tctgctgacg acgttgcgca gttttggaca cgatgggttg gaagcggcgc
     2641 tgcgggcgtt gggaaaggtc gatcaggtaa ccgttgtaga tcagaactca gtgtcgtttc
     2701 cgggtcttac ggcagtgaac acgatcacgc cgcgagtgcg ttatgcgggt tcccttgttg
     2761 agagtgttga tgtgagggac gcagagtcgc tgttggcgga ggtgactaaa gccgccggcc
     2821 ttgaccgggg attaattcgt tgggtggcgc tgccggagat cgcaaagccg aagccaattg
     2881 gagaagatgg ggtttcggcg atggcggggt tgctgaagtc gttggctgat gtgccgtcgg
     2941 tttcggggca tgagaagccg gtgcgtgagg cggttgcggc tgcgctgccg gcgtgggcgc
     3001 ggtcgcgcac gaccactgat aaagagggca atctgatttt ggaggttgga ccagaccgcg
     3061 atccggtgat gttcattgcg cacctcgatg aagtggggtt tgaagtcagc aacatagctg
     3121 cagatggcgt ggtcacgttg cgtgcacgcg gcggactgtt tccgtcgctc tgggaaggac
     3181 agcccgcgtt gcttcatttt gaagacggca aagcgccgtt gcgcggtgtg tttgtaccgc
     3241 gtgaaagcgc tacggcgaaa caaccggaag cagtgactgc gtggttcgga gtcgatgccg
     3301 cacgtttgaa acagctcggc gttgtgaatg gactctcggt gacggctgcg aagagtgcga
     3361 cgcgtctcgg cgccacacga ttcaccgcgc gcggactcga cgatcgcgcc ggttcgacgg
     3421 cgctgattct cgcggcgcga cagatcgatc ccgccacgtt gaaacgaaag gtcatcttcg
     3481 cgtggtccgt gcgtgaagaa accggactcg aaggcgcgat ggcgctcgca cagcgttacg
     3541 cgacgtcaat caaacgcgtg ttcagcgtcg acacgtttgt ctcttccgat tcgcccgcgg
     3601 aaacgacgcg cttcgcttac gcgccgctgg gccagggcgc ggtcattcgc gggctcgaca
     3661 acgcctcggt cgcagcgccg gccgagctcg aacgcatatt agcgatcgcg cgcgcgcaac
     3721 gcattccgct gcaagtcggg gcaacaaacg gcggcactga cggttccgat ttcattcgtt
     3781 acggcacgat acacgccagt ttgtcgtggc ccggacgtta cagccattcg ccggtcgagg
     3841 tcctcgacct gcgcgacctg caggcgctcg aacgcctggt ccatgcgctc gcgatcgcac
     3901 cttgaaacga atcttcattc tctgcgtgtt gttgctgtcg tgcgcgcaag tttcggcgca
     3961 gcagcaggat ctgactcgct acgtgaatcc ctttgtcggc actgccggtc acgggcacac
     4021 gtatcccggc gcgacgcggc cgttcggcat ggtccaactc agccccgaca cgcgtctcac
     4081 aggctgggac ggctgttccg gttaccacta ctccgattcg atcatctacg gcttcagtca
     4141 cacgcatctc agcggcaccg gcatctctga ctacggcgac atcctgctca tgccgacagt
     4201 cggcaaggtc aacctcaacg cgctaatcga cggctcgccc gagaaaggct acgcgtcgta
     4261 ttttcagcac cgaaacgaaa aggcatcacc gggttattac gcggtccaac tcgacgacga
     4321 caacatccgt gtcgaactca ccgccaccga acgcacgggc ttgcatcgct acacgtttcc
     4381 cgtgacgcag gaggcaaata tcatcatcga cctcacgcat cgcgacaaag ttctcgattc
     4441 tggtttgcgc atcaccggac gcgacacgat cgtcggttgg cgccgttcgg aggcgtgggc
     4501 caaggaacag attatttatt tcgcgatcca gttttcgcac ccgatcatcg ggtcgggaat
     4561 cgccgtggac gacaagctgg ttgagggttt gcgtgaagcg cgtggacaaa acgtcaaggg
     4621 ttacgttcgt ttctacaccg gtatcggaac cgaagtgctc gcgcgcgtcg gaatctcggc
     4681 ggtcgatact aacggcgcgt ggctgaacct cgcggcggag tcgaaccaca agactttcga
     4741 gaaagtcagg gccgacgcgg cggcggcgtg gaatgccgag ttgaacaaga tcacggtaac
     4801 cggcggcagc accgctcagt taaccaactt ctacacggcg ctgtatcaca cgatgatcgc
     4861 gccgaatctc ttcatcgacg tcgacggccg ttatcgcggg cgcgacatgc aggttcacac
     4921 cgcgaacggt tttcaaaact acacggtgtt ttcgttgtgg gacacttttc gcgccgcgca
     4981 tccgctttac gccctcatcg atcagaagcg cacacgcgat ttcatcaaga cgttcctggt
     5041 ccagtacgaa cagggcggac gtctgccggt ttgggagctt gcggcgaacg aaaccgacac
     5101 gatgatcggt tatcacgccg tctccgtgat tgcggacgcg gcggtgaagg gcattgacgg
     5161 gttcgatctg aacaaggctt tcgaagcgat gaagcagagc gctgagtttc ggcagcatca
     5221 cgggctgggg ccgtatatcg acaacggttt catcgcgatg gaagacgagc gcgagtcggt
     5281 ttcgaaggtg ctcgagtatg cgtatgacga ctggtgcatc gcgcaggtcg cgcgaatgct
     5341 cgggcgcacc gaggactatg agcgttatct cgcgcgggcg cagtcgtaca agaacgtgtt
     5401 cgatccggtt tcgggtttta tgcggccgcg tacgaatgga aactggatcg agccgtttga
     5461 tccgcgcgag gtgacgtttg cgtttacgga agcgaactcg tggcaataca cgttctttgc
     5521 gccgcaggat gttagcgggt tgatgaagtt gatgggtggg ccgcgtgggt ttgcgcgcaa
     5581 gttggaccag atgtttgcgg cggaaagccg gacgacgggg cgcgagcagg tggacatcac
     5641 ggggttgatc gggcagtacg cgcatgggaa tgagccgagc catcacattg cgtatcttta
     5701 caactatgcg ggtgagccgt ggaagacgca gtttcgcgtg cggcagatca tggatgagtt
     5761 ttacaagccg acgccggagg ggttgattgg taatgaggat tgcgggcaga tgtcggcgtg
     5821 gtacgtgttt agtgcggcgg ggttttatcc ggtgacgccg gggtcgacga tctatgcgat
     5881 tgggacgccg ttgtttccgg aagttaggtt taag
//
LOCUS       DASWTX010001346         3553 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_146845, whole genome shotgun sequence.
ACCESSION   DASWTX010001346 DASWTX010000000
VERSION     DASWTX010001346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3553
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146845"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..289)
                     /locus_tag="VGD38_20455"
     CDS             complement(<1..289)
                     /locus_tag="VGD38_20455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730468.1"
                     /translation="MSRKLILTAALLFALVGSQEVNKDRTEAARDDANQFIVAILRAD
                     GTLVPFAQYGNGGWMNPWPKPRQTAESIYAESTEEIPHSLGDLPEPWFKQCG"
     gene            complement(368..1732)
                     /locus_tag="VGD38_20460"
     CDS             complement(368..1732)
                     /locus_tag="VGD38_20460"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro peptidase family protein"
                     /protein_id="HEY0730469.1"
                     /translation="MHKLALRCLLITCFVVLALAAPAFAQQPFNKSEFVARRAKLFEK
                     IPDGLVVLFGAKGQHYPVKFRQSPDFYYLTGVEEPGAVLVLVGANKSSFLFVPRRSEP
                     QIRADGPGIWQMEKREEVYGLTRVQPIEEFLPMLQFFPSRAKKLYMLSGSQGNVQNAR
                     DELDYFETLEGSQSIFGGVSEAKKAIGMIQQIVPQLALHALNPLLDEMRWIKSPYEIE
                     LTRKSSEIAAEGVKEAMKGTQPGMYEYEIEAAARFVYTKRGARGDAFRPIVASGPNTM
                     ILHYSANNRKMLDGEVVYMDYGADYEYYTSDITRTWPVSGRFTPEQEKMYRCILEARD
                     AIIAAMKPGVTISQLQDVSGAVYKKHGYEKEFLALGRYIGHTIGISVHDVSPPDRNRP
                     LEAGVVFNVEPLLEIPEKKIHMRLEDTVLVTPTGSVNMTAGVPASLDEIYALIRQRAL
                     SINR"
     gene            1834..2490
                     /locus_tag="VGD38_20465"
     CDS             1834..2490
                     /locus_tag="VGD38_20465"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HEY0730470.1"
                     /translation="MNTADLQSVIFDFDYTLADSSLGVIESINFALQTMGHDRVSEEA
                     ACRTIGLSLAETFLTLGEHHEPERCHEFHQLFVKRAEEVMVQSTVLYETVPPMIEALH
                     ERGLRLGIVSTKYRRRIHDVLKRESLLHGFQVVIGGDDVEQHKPHPEGLFEAMKRLEC
                     SPSTVLYVGDSIVDAELAKRAGAALVVVLSGVTPRDHFDAYEPVAVLENISQLPQLLT
                     "
     gene            2487..>3553
                     /locus_tag="VGD38_20470"
     CDS             2487..>3553
                     /locus_tag="VGD38_20470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730471.1"
                     /translation="MMFIRLSLIVVALSSFGSLVFAQSSAPTPNINVDAYIPPRPPGR
                     TMRVASSHQLAESIQQAQDDPNTTSVHVFGGGSIKRPVIIKKYTTFDNATYSCDVTPE
                     NTIFSDISITDYGCFLVSDGVYVGGTYRPPQTVLDYFKSGDGRNPNDRYLLAVQALTA
                     EQLAKNGTTILEPTYANKLTPAVEVFQALGDVRYSHTGKASNITIQGFRIKGRQTVYD
                     GGVRSTILLGNCQHCAVMDVYLEDTASIGVTAGGSALEWKHADGTVSKDNFARDIVFT
                     RNIFSGVAAANTATINTEDAYVFNNYVRRPGHHNPKFGGGVCGHDHETNSPADHTRNI
                     YVYNNLYDYEGAHQEGAGSGI"
BASE COUNT          757 a         1014 c          983 g          799 t
ORIGIN      
        1 tcccgcattg cttgaaccac ggctccggca gatcgcctaa cgaatgaggt atttcttccg
       61 tgctctcagc gtagatgctt tctgcagtct ggcgtggctt gggccacggg ttcatccaac
      121 cgccgttgcc atactgagca aacggcacga gcgttccgtc tgctcgcagg atcgcaacga
      181 taaactggtt tgcgtcgtcg cgggcagcct cagtccggtc tttgttaact tcctgactgc
      241 caacgagcgc aaacaataaa gcagcggtga gtatcagctt cctgctcatc gctgagcaga
      301 ctagcccgca aacggatcgc cacacaaagg cgctgtcctc aacggcctac ccgtgctaac
      361 cacaagccta tcgattgata ctgagcgccc gttgccgaat cagcgcatag atctcgtcga
      421 gactcgccgg cactcccgcc gtcatgttca ccgagccggt cggcgttacc aacaccgtgt
      481 cctcgagccg catgtgaatc ttcttctcgg gaatctcgag caacggctcg acgttgaaaa
      541 ctacacccgc ttcaagcgga cgattccgat cgggcggcga cacgtcgtgc actgaaatcc
      601 cgatcgtgtg cccgatgtaa cgcccgagcg ccagaaactc cttctcgtat ccgtgcttct
      661 tgtaaacagc tccggagacg tcctgtaact gactaatcgt cactcccggt ttcatcgccg
      721 cgatgatggc gtctcgcgct tcgaggatgc agcgatacat cttctcctgc tcgggcgtga
      781 agcggccgga gacgggccac gtgcgcgtga tgtcggacgt gtagtattcg taatcggcgc
      841 cgtaatccat gtagacgact tcgccatcga gcatcttccg gttgtttgcc gagtaatgca
      901 ggatcatcgt gtttggtccg gaagcaacga tgggccggaa agcatcgcca cgcgcgccgc
      961 gcttcgtgta aacaaagcga gccgcggctt cgatctcgta ttcatacatc ccgggttgcg
     1021 tgcctttcat cgcttccttc acgccttccg ccgcgatctc cgagctcttg cgagtcaact
     1081 cgatctcgta cggcgatttg atccagcgca tctcgtccag caacggattc aacgcgtgca
     1141 aagcaagttg cggcacgatc tgctgaatca tgccgatggc tttcttcgcc tcgctgacgc
     1201 cgccgaagat cgactgcgac ccttcaagtg tttcgaagta gtcgagctcg tcgcgcgcgt
     1261 tctgaacatt tccctgcgag cccgagagca tgtagagctt cttcgcgcgt gacgggaaaa
     1321 actgcagcat cggcagaaac tcttcgattg gctgcacgcg cgtcaggccg taaacctctt
     1381 cccttttctc catctgccag atgcccggac cgtcagcgcg aatctgcggc tctgagcggc
     1441 gtggcacaaa caggaatgaa gacttgttcg ctccaaccag gaccaggacc gcgccgggct
     1501 cttcgactcc cgtcaggtag taaaaatcag gagactggcg aaacttgacc ggataatgct
     1561 gccctttggc gccaaagagc acgaccagtc cgtcgggaat cttttcaaac agcttcgccc
     1621 ggcgggccac aaactcgctt ttattaaacg gttgctgtgc gaacgcgggc gcagcgagtg
     1681 ccaggacaac gaaacatgtg atgagcaggc atctaagtgc gagtttatgc atgaggctgg
     1741 tccttttctt agaaatccga aagttaacgc aagaagcttt atagccaacg cgcaaaatgg
     1801 ccgggtaaag tatcatcaga gcacgcacat attatgaaca ccgccgacct tcagtctgtc
     1861 atctttgatt ttgattacac tttagccgat tcgtctttgg gcgtcatcga atccattaac
     1921 ttcgcccttc agacgatggg acacgaccgg gtttcggagg aagcggcctg ccggaccatc
     1981 ggcttgtccc ttgccgagac gtttctcacg ctcggcgaac accacgaacc ggaacgatgc
     2041 catgagttcc accagttgtt tgtaaagcga gcggaagaag tgatggttca gagcaccgtg
     2101 ctttacgaaa cagtgccgcc gatgatcgag gcgcttcatg agcgcgggtt gagattgggc
     2161 attgtttcga cgaagtatcg ccgccgcata catgatgttt tgaagcgcga gtcgctgctg
     2221 catgggtttc aggtcgtcat tggtggtgat gacgtcgagc agcacaagcc gcatcctgaa
     2281 ggtttgttcg aggcgatgaa acggctcgag tgttcgcctt cgactgtatt gtatgttggc
     2341 gacagcattg ttgatgctga gctggcgaaa cgagccggcg cggcgttggt cgttgtgctt
     2401 tcgggtgtca cgccgcggga tcactttgac gcttacgagc ctgtcgcagt gttggaaaat
     2461 atcagtcagc ttccgcagtt acttacatga tgtttattcg cctgagtctg atcgttgtcg
     2521 cgctttcgtc gtttgggagt ttggtttttg cgcaaagttc cgcgccgacg ccgaacatca
     2581 acgttgatgc ctacattcca ccgcggcctc cggggcgcac gatgagagtc gcgtcgtcgc
     2641 accaacttgc cgaatcgatc cagcaggcgc aggacgaccc gaataccact tcggtgcacg
     2701 tgttcggagg cggatcgatc aagcggcctg tgattatcaa gaagtacacg acgttcgaca
     2761 acgcgacgta ctcgtgcgac gtgacacccg agaacacgat cttttcagac atctcgatca
     2821 ctgattacgg ctgctttctc gtttcagacg gggtgtacgt tggcggcact tatcgtccgc
     2881 cgcagaccgt gctcgactat ttcaagtccg gcgacggccg caatccgaat gaccgttatt
     2941 tgctggctgt tcaggcgttg acggccgagc agttggcgaa aaacggaacc acgatccttg
     3001 aaccgactta cgccaacaaa ttaactccgg cagttgaagt gtttcaggcg ctcggcgatg
     3061 tgcgttactc gcacacaggc aaagccagca acatcacgat tcaggggttc aggatcaaag
     3121 gacggcagac tgtctatgac ggtggtgtgc gttccacgat tctgctcggc aactgtcaac
     3181 actgtgcggt gatggatgtt tatctcgaag acacggcttc gattggcgta acagcaggcg
     3241 gctccgcgct cgagtggaag catgcggacg gcacggtgag caaggacaac ttcgcgcgcg
     3301 atatcgtgtt cacgcgtaac atcttctccg gcgtggccgc ggcgaacacg gctacgatca
     3361 ataccgagga tgcttacgtc tttaacaact acgttcgccg gccgggacat cataacccga
     3421 agtttggcgg tggtgtttgc ggtcacgatc acgaaacgaa cagccccgcg gatcacacgc
     3481 gcaacatcta cgtctacaac aatctttatg attacgaagg cgcgcaccag gaaggcgccg
     3541 gcagcggtat ctg
//
LOCUS       DASWTX010001347         3503 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_16929, whole genome shotgun sequence.
ACCESSION   DASWTX010001347 DASWTX010000000
VERSION     DASWTX010001347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3503
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16929"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1430
                     /locus_tag="VGD38_20475"
     CDS             <1..1430
                     /locus_tag="VGD38_20475"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FG-GAP-like repeat-containing protein"
                     /protein_id="HEY0730472.1"
                     /translation="TRNEIVPGAERWYTNAATLADFDGDGHTDLIVGNFFPDGARILD
                     ARANVPDGMQDSMSKAQNGGRKHLLMWKAPAAGSLVQFEEVNDVLDEQSARGWALAIG
                     AADLDGDLLPELYFANDFGPDRLLHNRSTPGKPRFELLSGRRSLTTPKSKVLGRDSYK
                     GMGVDFGDLNDDGWPDIFVSNITQEYGLEESNFLFLSTGNVESMKQGVAPYVDRSEPM
                     GLSRSGWGWESRLGDFNNDGVLEALQATGFMKGNVNRWPELHEVVMGNDQLLRHPRSW
                     PTLQTGDDISGNGHNFFFVRAPDGRFHDIAKQLSLDQPLLTRGIATADVDGDGRLDYA
                     VANQWETSFFYRNESSNPGTFIGLRLRLPVGDSTSKTSVCRDGKGVITSASRAAIGAE
                     ARVFAPERAPIVQQVDGGSGHSGKRSPDLQFGLGQLPEDRPITIGLRWRDARGVVQQE
                     TIQILPGGWYTVLLGREKGVANECK"
     gene            1417..2340
                     /locus_tag="VGD38_20480"
     CDS             1417..2340
                     /locus_tag="VGD38_20480"
                     /inference="COORDINATES: protein motif:HMM:NF015100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RnfABCDGE type electron transport complex
                     subunit D"
                     /protein_id="HEY0730473.1"
                     /translation="MSANELSNRVNRLGGLRRFAIAITVLNILGHAFFGFEQSLAQPL
                     VALAAAYSVELLLEFIDARLNRRPLRFLGGGPRKFIDFLLSAHITGLACAMLLYANET
                     LGPVIFASVVAICSKCLLRAPNGRGTRHFLNPSNFGITITLLAFSWVSVAPPYQFTEN
                     MIGFGDWILPAVIVCTGTFLNARFTHRLPLIAAWLGGFVAQAAVRSVFFDAPFGASLI
                     PMTGVAFILYTFYMVTDPATTPEGRREQIIFGFSVAAVYGLLMVGHIVFGLFFALTIV
                     CTVRGLWMFACRWIKGREREEIPAAALAREA"
     gene            2342..>3503
                     /locus_tag="VGD38_20485"
     CDS             2342..>3503
                     /locus_tag="VGD38_20485"
                     /inference="COORDINATES: protein motif:HMM:NF012337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyketide synthase"
                     /protein_id="HEY0730474.1"
                     /translation="MSQAIAIVGMACRYPDARSPDELWENALAQRRAFRRIPAERLNL
                     NDYLSADRQSPDQTYSTEGAFIEGYEFDRARFRVPGATYRAADPAHWLALDVAAAALE
                     DAGFVEGEGLPREATGVFVGNTLTGEFSRANTMRLRWPYVRRVVRKVLEDDACPPERQ
                     RELLAQMEALYKQPFPPVGAETLAGGLSNTIAGRICNHFDLNGGGYTVDGACASSLLA
                     VINACSSLAVGDLDVAIAGGVDLSTDPFELVGFAKTGALASDLMRVYDARSAGFWPGE
                     GCGLVVLMRHEDALVKRLRVYAVIRGWGVSSDGSGGITRPEVEGQLIALRRAYARAGY
                     GTDTVAYFEGHGTGTAVGDTTELQALTRARSEAFANVAVDGTQASPAAVVSSV"
BASE COUNT          648 a         1011 c         1122 g          722 t
ORIGIN      
        1 acacgcgcaa cgaaatcgtt cccggcgccg aacgctggta cacaaacgca gccacgcttg
       61 cagacttcga cggcgacggt cacacggatc tgatcgtcgg caacttcttc ccggatggag
      121 cacgcatcct cgacgcacgc gccaatgttc ccgacggaat gcaggactcg atgtcgaaag
      181 cgcagaacgg cggacgaaaa catctcctga tgtggaaagc gcccgcagcg ggttcccttg
      241 ttcaattcga agaagtcaac gacgtactcg acgaacagag cgctcgcggt tgggcgctcg
      301 cgatcggcgc ggccgatctc gacggcgact tgctccccga actctatttc gccaacgact
      361 tcggccccga tcgtctcctg cacaatcgtt cgacacccgg caagccgcgg tttgagttgt
      421 tatcaggacg gcgatcgttg acgacgccga agtcaaaagt gctcggccgt gattcttaca
      481 agggcatggg cgtggacttc ggcgatctga acgacgacgg atggcccgac atcttcgtca
      541 gcaacatcac gcaggagtac gggctcgagg aaagcaactt tctctttctc agcacgggaa
      601 atgttgagtc gatgaagcag ggcgtcgctc cttacgtcga tcgcagcgag ccgatgggtc
      661 tttcgcgcag cggttgggga tgggaatcac ggctcggcga tttcaacaac gacggcgtgc
      721 tcgaggcgtt gcaggcaacg ggcttcatga agggcaacgt taaccgttgg cccgaactgc
      781 acgaagtcgt gatgggcaac gatcaactgc tgcgccatcc gcgtagttgg cccacactgc
      841 aaaccggaga cgacatcagc ggcaacggtc acaacttctt cttcgtgcgc gcgccggacg
      901 ggcgttttca tgacatcgcc aaacagcttt cgctggacca gccgttgctc actcgcggta
      961 tcgcgacagc agacgtcgac ggcgacggcc gtctcgatta cgcggtcgcg aaccagtggg
     1021 aaacttcatt cttctaccgc aacgagagca gcaatccggg caccttcatc gggctcaggc
     1081 tccgcctgcc ggtcggagac agcacgtcga agacaagtgt gtgccgcgac ggaaagggcg
     1141 taatcacaag cgcgtcacgt gcggcgatcg gcgctgaagc gcgtgtgttt gcgcccgagc
     1201 gcgcgccgat cgtgcagcag gttgacggtg gcagcgggca ttcaggcaaa cgcagtcctg
     1261 atttgcaatt cgggttgggc caacttcccg aagacaggcc gataacgatc gggctgcgct
     1321 ggcgcgatgc tcgcggagta gttcaacagg aaacgattca aatattgccg ggcggttggt
     1381 acacggtcct gctcggtcgt gagaagggag tcgctaatga gtgcaaatga gctgagcaat
     1441 cgagtgaacc gcctgggagg gctgcgtcgc ttcgcgatcg ccatcaccgt cctcaacata
     1501 ctcggacacg ctttctttgg cttcgaacaa tcgttggccc aaccgctcgt cgcgttggct
     1561 gcggcgtaca gcgtcgagct gttgctcgag ttcatcgacg cgcgtttgaa ccgccgtccg
     1621 ctcaggtttc tcggcggcgg cccgcgcaag ttcatcgatt ttctgctgtc ggcgcacatc
     1681 accgggctcg cgtgcgcgat gctgctttac gcaaacgaga cacttggacc agtcatcttc
     1741 gcatcggttg tggcgatctg ttcaaagtgc ctgttgcgcg cgcctaatgg acgcggcacg
     1801 cgtcacttcc tcaacccgtc gaacttcggc atcacgatca cgctgctcgc gttttcgtgg
     1861 gtcagcgtgg cgccgcctta tcagttcacc gagaacatga tcggttttgg cgactggatt
     1921 ttgcccgccg tgatcgtctg cacgggaacg tttctgaacg cgcgcttcac acatcgtctg
     1981 ccgttgatcg cagcgtggct cggcggcttt gttgcacaag ccgcggtgag gagcgtgttc
     2041 tttgacgctc cgttcggcgc gtcgttgata ccgatgacgg gcgtcgcgtt catcctctac
     2101 acgttctaca tggtgaccga tcctgcgacc acgccggagg gacggcgcga gcagatcata
     2161 ttcggtttca gtgttgctgc cgtgtacggg ctgctgatgg tgggccatat cgtcttcggc
     2221 ctcttctttg cgctgacgat cgtttgcacg gtccgcgggc tgtggatgtt cgcgtgcagg
     2281 tggatcaagg gccgcgagcg tgaagagata cccgccgccg ctctcgcgag ggaggcctga
     2341 gatgtcacaa gcaatcgcca tcgtcggcat ggcgtgtcgc tatccggatg cgcgttcgcc
     2401 ggatgagctt tgggaaaatg cgttggccca acggcgtgcg ttcagacgca ttccggctga
     2461 acgactgaat ctcaacgact acttgtcggc ggataggcaa agcccggatc agacgtactc
     2521 gacagaaggc gcgtttatcg aagggtacga gttcgatcgc gcgcgcttcc gtgtgccggg
     2581 cgcgacgtat cgtgcggccg atcccgcgca ctggctcgcg ttggatgtcg ctgctgcggc
     2641 actcgaagat gcgggttttg tggaaggtga aggactgccg cgtgaagcga ccggtgtctt
     2701 tgtcggcaac acactgacag gtgagttttc acgggcgaac acgatgcgct tgcgctggcc
     2761 gtacgtgcgt cgcgttgtgc ggaaggtgct cgaagacgat gcgtgtccgc cggagcgtca
     2821 gcgtgaactg ctcgcgcaga tggaggcgct ttacaaacaa ccgtttccgc cggtcggcgc
     2881 ggagacgctt gccggcgggc tttccaacac gatcgccggg cggatctgta atcacttcga
     2941 tctcaacggc ggcggctaca cggtcgatgg cgcgtgtgca tcatcgctgt tggcagtcat
     3001 caacgcgtgc tcgtcgctgg cggttggaga tctcgatgtg gcgatcgccg gcggcgttga
     3061 tctgagcacc gatccgttcg agctcgtggg gttcgctaag acgggcgcgc tcgcgtcgga
     3121 tctgatgcgt gtctacgacg cgcgctcggc ggggttctgg cctggtgagg gttgtgggct
     3181 cgtcgtcctc atgcgccacg aagatgcgct tgtgaagcga ctgcgagttt acgctgtgat
     3241 acgcggctgg ggtgtttcgt ctgacggtag tggcgggatc actcgtccgg aggttgaagg
     3301 ccaactcatc gcgttacgac gcgcttacgc acgcgcgggt tatggtacag acacggtcgc
     3361 atacttcgaa ggacacggaa cgggcacggc agtcggtgac acaactgaac ttcaagcact
     3421 cacgcgcgcg cgaagcgaag cgtttgcgaa tgttgctgta gacggaacgc aagcgtcgcc
     3481 ggcggccgta gttagttccg tca
//
LOCUS       DASWTX010001348         2271 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_257623, whole genome shotgun sequence.
ACCESSION   DASWTX010001348 DASWTX010000000
VERSION     DASWTX010001348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2271
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257623"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..195
                     /locus_tag="VGD38_20490"
     CDS             <1..195
                     /locus_tag="VGD38_20490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730475.1"
                     /translation="ATELVQGKQRLEEDEVLEVVRLPVSEALEMITSGEIQDAKTIIG
                     LMLAAPKIGVPLLEADYPAV"
     gene            231..1103
                     /locus_tag="VGD38_20495"
     CDS             231..1103
                     /locus_tag="VGD38_20495"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II CAAX endopeptidase family protein"
                     /protein_id="HEY0730476.1"
                     /translation="MITNESSTQQTPLPTEHGGLPEQHVENTIQPIAPAPTVGRWYDW
                     YNLAKAFMLWVGSILLLVAVQLVFTVPYLIYVRSTTGELNLELLQTDKIAAFLQIIAV
                     APTHILTFGLIWLMATEGRKRPFWKTVGFEWPENSSPTVVVLVCAGLAVALLSLGAVV
                     TYFWGGNKTQLDLLVESSVPARLVTALVATFTAPLVEELIYRGVLYSAIERTLGTIIA
                     ILVVSLLFAGVHVFQYKDNLAVIGVISLLSVTLTLVRAFSGKVLPSFIIHLVFNGIQA
                     IFIALSPFIKWSQN"
     gene            1110..>2271
                     /locus_tag="VGD38_20500"
     CDS             1110..>2271
                     /locus_tag="VGD38_20500"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY0730477.1"
                     /translation="MAAGYDVVVVGGGIGGLTVAALLSARGFSTCVLERQSQVGGCIG
                     RVEFSGLQFEPGMGVYTSFGEGEISERIFAELPVDVPQTSLVTQPYVVRLADQTDVKL
                     TGGESFVDELVVDVQLRAGLAHARGPLYEIEGGPATLAERLAESIKRSGGTVRLDTPV
                     LRLAYDQSGAAIGVDLLSGERITATKAIVSNLTIWDTYGKLIGLNRTPPEIKKQLNTL
                     QGSGAYVVYATIEDSAIARLPSERMLVATTPIDADDDWFTEITLAVHGRTVTLKSSTD
                     VNEWFTYHSSEEDFEDSDQAALERFWTKLHAAVPELGSGIEIIETANPRTFYDQTRRK
                     LGMVMGTQSSEIPSPQAVFPNLFVVGDTVSPFSDLSSVAQTALSVADTIKTKR"
BASE COUNT          456 a          656 c          656 g          503 t
ORIGIN      
        1 gcgaccgagc tcgtgcaggg aaaacaacgt ctcgaagagg acgaggtgct cgaggtcgtg
       61 cgtctgccgg tttcagaagc gctggagatg atcacgagcg gcgagattca agacgcgaaa
      121 accatcatcg gcctcatgct cgcagcgcca aagatcggcg tgcctttgct cgaagccgac
      181 tatcctgccg tttgagagtt catccgtatc atccgtgata aactcgctcg gtgatcacaa
      241 acgagtcttc aacccaacag acaccgctac ctaccgagca tggcggtctg ccggaacagc
      301 acgtagaaaa cacgattcaa ccgatcgcgc cggcgccaac agtgggccgc tggtacgact
      361 ggtacaacct cgccaaagca ttcatgttgt gggtcggcag catcctcttg ctcgtcgcgg
      421 tgcaactggt tttcaccgtt ccttacttga tttacgtccg ttcaactacc ggcgagctaa
      481 acctcgagct gctgcaaact gacaagatcg ctgctttcct tcaaatcatc gcggtggccc
      541 cgacgcacat actgaccttc gggttgattt ggctgatggc cactgaggga cggaaacgcc
      601 cgttttggaa gaccgtcggg tttgagtggc cggagaattc cagcccgact gttgtcgtgc
      661 tcgtgtgtgc cgggctggcg gtcgcattgt tgtcgctcgg cgccgtcgtg acgtatttct
      721 ggggcggcaa caaaacacag ttggacctgc tagtagagag ttcggtgccc gctcgcttgg
      781 tgaccgcgtt agtagcgacg ttcacggctc cgctcgtgga agaactgatt taccgtggtg
      841 tgctttattc cgcgatcgaa cgaacgctcg gtacgatcat cgcgatctta gtcgtgtcgc
      901 tgttgtttgc cggtgttcac gtcttccagt acaaagacaa cctggccgtg atcggcgtta
      961 tctcgctctt gagcgtcacc ttgacgctgg tgcgcgcttt ctcgggcaag gtgcttcctt
     1021 cgttcatcat tcatctcgtc ttcaacggta tccaggcgat attcattgcg ctctcgccgt
     1081 tcattaagtg gagccagaat tgattcgcga tggctgcggg ctatgacgta gtcgtagtgg
     1141 gcggcgggat tggcggcctg acggtggccg cgctgttgtc ggcgcgcggg tttagtacgt
     1201 gtgtgctgga gcggcagtcg caggtcggtg ggtgtatcgg gcgcgttgag ttttcggggc
     1261 ttcagttcga gccggggatg ggcgtttaca cgtcctttgg cgaaggtgag atttccgagc
     1321 ggattttcgc ggagttgccc gttgatgtgc cgcagacttc gctcgtgacg cagccgtatg
     1381 ttgtgcggct ggcagaccaa acggatgtta agttaaccgg aggggagagt tttgttgacg
     1441 agttggtggt cgatgtacag ctacgcgccg gactcgcgca cgcacgcggg ccgctctacg
     1501 agatcgaggg gggaccggcg acgctggcgg agcgtttggc tgaatcgatc aaacgcagcg
     1561 gtggtacggt tcggctcgac actcccgtgc ttcgacttgc atacgatcag tctggtgcag
     1621 cgattggcgt tgatctactg agtggtgaaa ggattacagc cacgaaagcc atcgtcagca
     1681 acctgacgat ctgggacacg tacggcaaac tcatcggcct gaaccgcaca ccgcccgaga
     1741 tcaagaagca gctcaataca ctgcaaggca gtggagctta cgtcgtctac gcaacgattg
     1801 aagactccgc catcgcgcgt ctgccgagcg aacgaatgct cgtcgccaca acacccattg
     1861 acgccgacga cgattggttc accgagatca cgctcgccgt tcacggccga acagtaacac
     1921 tcaaatcatc caccgacgtg aacgagtggt tcacctatca ctcgagcgaa gaagacttcg
     1981 aagactccga tcaagctgcc ctggaacgct tctggaccaa actccacgcc gccgttcccg
     2041 aactcggctc gggcatcgag atcatcgaaa ccgccaaccc ccgcaccttc tacgaccaga
     2101 cccgccgcaa gctcggcatg gtgatgggta cccaatcatc tgaaatccct tctcctcagg
     2161 ccgtattccc gaaccttttc gtggtcggcg acaccgtcag ccctttttcc gacttgagtt
     2221 ccgtcgccca aaccgccctt tccgtcgccg acaccatcaa aacaaaacgc t
//
LOCUS       DASWTX010001349         1960 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_280535, whole genome shotgun sequence.
ACCESSION   DASWTX010001349 DASWTX010000000
VERSION     DASWTX010001349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1960
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280535"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..335
                     /locus_tag="VGD38_20505"
     CDS             <1..335
                     /locus_tag="VGD38_20505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730478.1"
                     /translation="GEKQAAILAAEGAAQARLRAAEAESEAISRVANSIPGGDPAHYL
                     IATRYIDSMRDMTRTNNSKVIFMPMETSAMLSSVGAIKEVLSQTGEPSGERENPPPPP
                     PRPRELPR"
     gene            482..>1960
                     /locus_tag="VGD38_20510"
     CDS             482..>1960
                     /locus_tag="VGD38_20510"
                     /inference="COORDINATES: protein motif:HMM:NF012449.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0030955 - potassium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEY0730479.1"
                     /translation="MVELLTRKVYRKTLASIVASIQPKMKYASLVNMVHCGVTIFRIN
                     LSWFKKTRTDDWITKLREIEKIAVDEQLVLGIMLDTKGPEFRVRNLRTHSVPLDVNQN
                     GPVYAPGKRGFIYKRGQKVILTLDQDAKTKSDQIAVEAPTNTAFLRRSKNVVFGDGDY
                     VAAIESDRDAQSMFIRPLETMCVWDGSKVNFPGTGVSARALSAEDQEILKFFIEAQRR
                     LNLDSRVNFMFAQSFIKTVRDVQRLTDFLQDTMDVKDPIIIAKLETFESSEEANLQSI
                     INEASAVMIARGDLANETSRGQLPRLQRQIIKVAKQFNKPVLLATQVYGSMKDFRRTN
                     CARPEAEDVRSALELGVDGFVLTGELTERPRNPEVVVEALAKQIEDDEADLINMEKGK
                     AQGTNHYERLRDVERVAFHQSMWKQMREPSLSDEIRSALGTTDFAIAAVFRGNQYGAI
                     GIFPFTVHGRTVREMGRFYSEIAIFPICPSPEVATSLLLCRCT"
BASE COUNT          493 a          525 c          558 g          384 t
ORIGIN      
        1 aaggcgagaa gcaggcggcg attctggctg ctgaaggcgc ggcgcaggcg cgtctgcgtg
       61 cggcggaagc ggagtcggaa gcgatcagtc gtgtggcgaa ttcgattccc ggcggcgatc
      121 cggcccacta cctgatcgcg acgcgttaca tcgacagcat gcgcgacatg acacgcacca
      181 acaactcgaa agtcatcttc atgccgatgg aaacgtcggc gatgctgtcg agcgtcggtg
      241 cgatcaaaga agtgctttca caaaccggcg agccgagtgg cgaacgcgag aacccaccac
      301 caccgccgcc gcgcccacgc gaactgccgc ggtaagcgaa atgttccctt tctactagaa
      361 gagtgctagg gtaagtcacg cattaacagg taaagccaag ttctcacgcg tcacaggacc
      421 attcgcggcc gcataacggc tgcgcggacc aatctctttt aaccacctaa aggagggaac
      481 catggtcgaa ctgcttacca ggaaggtcta tcgcaagact ctcgcttcca ttgttgcttc
      541 aattcaacca aagatgaagt atgcgtcgct ggtgaacatg gtccactgcg gtgtgaccat
      601 cttccgcatc aatctctcct ggtttaagaa gacacgaaca gacgattgga tcacgaagct
      661 gcgcgagatt gagaagatcg cggtagatga gcagttggtg ctcggaatca tgctcgacac
      721 caaagggccg gagttcaggg tcaggaacct gcgcacgcac tcagttcctc tcgacgtcaa
      781 tcagaacggc ccggtctacg cgccgggcaa gagaggattc atttacaagc gcggtcagaa
      841 agtgatcctc acgttggacc aggatgcgaa aacgaagtcc gatcagattg cggtggaagc
      901 cccgacaaat accgcgttcc tgcgacgcag taagaacgtg gtcttcggcg atggcgatta
      961 cgtagcggct atcgaatccg accgagatgc acagtcgatg tttattagac cactggaaac
     1021 aatgtgtgtc tgggacggat ccaaagtgaa tttccccggc acgggggtgt ctgccagggc
     1081 cctcagtgca gaagatcagg agatactcaa attctttatc gaggcgcagc gacgtctgaa
     1141 tctcgacagc cgtgtgaatt tcatgtttgc gcagtcgttt attaagactg ttcgcgacgt
     1201 acaacggctt accgatttcc tgcaggacac gatggacgtc aaggacccca tcatcatcgc
     1261 caagctggag acgttcgaat catccgagga agccaacctg cagagcatca tcaacgaagc
     1321 ttcggctgta atgatcgcac gtggcgatct ggcgaatgaa acctcgcgtg gacagttgcc
     1381 gcggctacag cgtcaaatca tcaaagtcgc aaaacagttc aacaaaccag ttctcctggc
     1441 cacgcaggtt tacggctcaa tgaaagactt ccggcggaca aattgcgcac ggccggaagc
     1501 agaagacgtg cggagtgccc ttgagttagg cgtagatggg tttgtgctga ccggcgaatt
     1561 gacagaaagg ccccgcaatc cggaggtggt ggttgaagcc cttgccaaac agatcgaaga
     1621 cgacgaagcc gacctgataa acatggagaa aggaaaagct caagggacga atcactacga
     1681 acgactgcga gatgtcgaac gagtagcctt tcaccagtcg atgtggaaac agatgcgcga
     1741 gccctcgctc tctgacgaga tacgaagcgc gctgggcacc acggacttcg cgattgccgc
     1801 agtctttcgc ggcaatcagt atggggccat cggtattttc ccgttcaccg tacatggccg
     1861 cactgtacga gagatgggcc gcttctactc ggagatagca atattcccga tttgtccctc
     1921 accagaggta gccacgagtt tgttgttgtg caggtgtacc
//
LOCUS       DASWTX010001350         2517 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_429392, whole genome shotgun sequence.
ACCESSION   DASWTX010001350 DASWTX010000000
VERSION     DASWTX010001350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2517
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_429392"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..372)
                     /gene="trpA"
                     /locus_tag="VGD38_20515"
     CDS             complement(<1..372)
                     /gene="trpA"
                     /locus_tag="VGD38_20515"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR00262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEY0730480.1"
                     /translation="MGRIEAAFDELKRQGRKGFIPFITAGDPDLETTRELLIELSGST
                     VIELGVPFSDPMADGPVIQRASERALKHGISVGDVLKVVASARREIETPIILFSYFNP
                     LLQFGIKRLAEEAKAAGIDGVL"
     gene            complement(377..1567)
                     /gene="trpB"
                     /locus_tag="VGD38_20520"
     CDS             complement(377..1567)
                     /gene="trpB"
                     /locus_tag="VGD38_20520"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEY0730481.1"
                     /translation="MQPDELGHWGKYGGRFVPETLMAPLEELTDAYQSSRDDESFQTE
                     LQDLLTHYAGRPTPLFHAARLSEHCGGAKIYLKREDLLHTGAHKINNTIGQVLLARRM
                     NKRRIVAETGAGQHGVATATVCALFGLECVVYMGAEDMQRQALNVFRMQLLGAEVREV
                     NAGSRTLKDAINEALRDWVTNVADTYYLLGSALGPHPYPLMVRDFQSVIGREARAQVL
                     EQEGRLADVLVACVGGGSNSIGLFYPFLNDETVRMIGVEAGGSGDELGQHAARFNAAG
                     GGRPGVLQGTMSYVLQDANGQVAATHSVSAGLDYPSIGPEHAFLHDAGRVEYTSVSDA
                     AALEAFQLLSRLEGIIPALESAHAVAHAIKAARELRRDQILIANLSGRGDKDIDSVRA
                     QLES"
     gene            complement(1570..>2517)
                     /locus_tag="VGD38_20525"
     CDS             complement(1570..>2517)
                     /locus_tag="VGD38_20525"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing response regulator"
                     /protein_id="HEY0730482.1"
                     /translation="TMSARAEKRNIAKLSDRARGRVLLIADDDQAQFVEAVTARGMSV
                     VGVSNGAAALVSLQRSRPHLVVANPSARGLRIKELAKMLAQSDDGIPLVLAGSQQATL
                     DIRQAALREGAFDYFELPLEFELLLERTQQLVALRQKIDQLRSDADLDSLTGLANRRR
                     FRVALKQEVERWRRYRIPCALLMLDIDHLKRINDQFGHPAGDAVIRQIAQTLKEVSRD
                     NDTAARLGGEEFALLLAGIDLQKAAVAAERLRTVLSGRSVDGVGTVTVSIGVASCPEN
                     ATSERALYSASDSALYVSKNAGRDRVSVAPPLQEKLPGV"
BASE COUNT          531 a          856 c          637 g          493 t
ORIGIN      
        1 taaaacgccg tcgatgccgg cggctttcgc ctcttctgca agtcgcttta tgccaaactg
       61 caacagcggg ttgaaatagc tgaaaagaat tatcggtgtt tctatttcgc ggcgcgcgct
      121 agcgacaacc ttcaaaacat ctccgacgct tatgccgtgc tttagcgccc gctccgacgc
      181 acgctggatc accggtccat ctgccatcgg atcgctaaac ggcacaccca gttcgataac
      241 cgttgaacca gacagctcga tcagtagctc ccgggtcgtt tcgagatcag ggtctcccgc
      301 ggtgataaac ggaatgaacc ccttcctgcc ctgccgcttc aactcgtcga aagctgcttc
      361 aatccgtccc aagcgtttac gactccaact gtgcgcgcac cgaatcgata tctttatcgc
      421 cgcgccccga aagattcgcg atcaggatct gatcgcgccg caactcgcgc gcggctttga
      481 tcgcatgcgc caccgcgtgc gcggattcga gcgcgggaat gatcccttcg agccgcgaaa
      541 gaagttgaaa tgcctccaac gcggcagcat ccgacaccga cgtgtattca acacgccccg
      601 cgtcgtgcag aaatgcatgc tctgggccaa tggatggata atctaacccc gccgagacgg
      661 aatgcgtcgc agcaacctgc ccgttcgcat cctgcaacac gtaactcatc gttccctgca
      721 acacgccggg acgcccgcca cccgccgcgt tgaaacgcgc cgcatgttgg cccagctcgt
      781 caccactgcc gcccgcctcg acaccgatca tgcgcaccgt ctcatcattc aggaacggat
      841 aaaacagacc gatcgaattc gagccgccac caacacacgc cacaagcacg tccgccaagc
      901 gcccctcctg ctcgagaacc tgcgcccgcg cttcgcgtcc aatgacgctt tgaaaatcgc
      961 gcaccatcag cgggtacgga tgtggtccaa gcgcgctgcc caacaagtaa taagtatcgg
     1021 ccacgttcgt gacccaatcg cgcagcgcct cgttgatcgc atccttcaac gtgcgcgaac
     1081 cggcattcac ctcacgcact tccgcgccga gcaactgcat gcgaaacaca ttcaacgcct
     1141 gccgctgcat gtcttccgcg cccatgtaga ccacgcattc caaaccaaac aacgcgcaaa
     1201 ctgtcgccgt cgccacaccg tgctgacccg cacccgtctc ggcaacgatg cgacgcttgt
     1261 tcatgcgccg cgcgagcagc acctggccta tcgtgttgtt gatcttgtgc gcgccggtgt
     1321 gtagcaggtc ttcgcgcttg agataaatct tcgcgccgcc gcaatgctca cttaaacgcg
     1381 ccgcgtgaaa caaaggcgtg ggccggccgg cgtagtgagt tagcaggtcc tgaagttctg
     1441 tttgaaagga ttcgtcgtcg cggctcgact ggtatgcgtc ggtcagttct tcgagcggcg
     1501 ccatcagtgt ttccggaacg aagcgcccgc cgtacttacc ccaatggccc aattcatcag
     1561 gttgcatttc tacacgcccg gcaatttttc ctgaagcggc ggagcgaccg acacgcgatc
     1621 ccgtcccgcg tttttcgaaa cgtaaagcgc actgtcactc gcggagtaaa gcgcgcgttc
     1681 cgaagtcgca ttctcaggac aactcgcgac gccgatgctc accgtcaccg ttcccactcc
     1741 atcaacactt ctgccgctca gcacagttcg caaacgttcc gccgcgactg ccgccttctg
     1801 caaatcaata cccgcgagca acagcgcaaa ctcttcaccg ccgagccgcg cagccgtatc
     1861 gttgtcgcgc gaaacttctt tcagcgtctg cgcaatctgg cgaatgacgg catcgcctgc
     1921 aggatgtcca aactgatcgt tgatgcgctt caggtgatcg atatccagca tcaacagcgc
     1981 gcacggtatg cgatagcgcc gccaacgttc aacctcctgc ttcaacgcca cgcgaaaacg
     2041 ccgccgattc gcgagacccg tcaacgaatc caagtccgcg tccgatcgca actgatcaat
     2101 cttctgccgc aacgcgacga gctgctgtgt tcgttcgagc agcagttcaa actcgagcgg
     2161 caattcgaag tagtcgaaag cgccttcgcg caacgcggcc tgacgaatgt cgagcgttgc
     2221 ctgctgcgat ccggcgagca cgaggggaat tccgtcgtct gactgcgcca gcatcttcgc
     2281 gagctctttg attctcaacc cgcgcgcgga aggattggct acgacgagat gcggacgcga
     2341 tcgttgcaac gaaaccagcg ccgccgcgcc gttcgaaacg ccgacgacac tcattccgcg
     2401 tgcagtcacc gcttccacaa actgcgcctg gtcgtcgtcc gcaatcagca gcactcggcc
     2461 gcgcgcgcgg tcgctcaatt tcgcaatatt tcttttttca gcccgcgcac tcatagt
//
LOCUS       DASWTX010001351         1750 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_41288, whole genome shotgun sequence.
ACCESSION   DASWTX010001351 DASWTX010000000
VERSION     DASWTX010001351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1750
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41288"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(209..742)
                     /locus_tag="VGD38_20530"
     CDS             complement(209..742)
                     /locus_tag="VGD38_20530"
                     /inference="COORDINATES: protein motif:HMM:NF028004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P460 family protein"
                     /protein_id="HEY0730483.1"
                     /translation="MLKRFAFLLAIALTVAAAITATTLQPGRANQQISSIFVSEIPPG
                     YRDWKLVSVAHEEGNLNDIRAILGNDVAIKTYREGKLPFPEGAIIGRIAWRHVPSEEN
                     NKAFGRAQSFVAGEAPPWYLQFMVKDSKKYATTGGWGYAQFDKDGNPGPESDLKKCHP
                     CHEAIKDRDFVFTRYTH"
     gene            874..>1750
                     /locus_tag="VGD38_20535"
     CDS             874..>1750
                     /locus_tag="VGD38_20535"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0730484.1"
                     /translation="MRILQVCSVTSFGGGERHLADLSRALNDLGHEVFAASVPGSPLS
                     DELSFLPHERMLALNKRGYVTNVTSLARFVRAHEIEIVHAHAARDYHLAALAVRMASQ
                     SRLVLTRHALFPLKRVNRPLLSGVGRVIAVSEAVAESVRSSGVIESSKITVVHNGIDV
                     DRFERTVGSAHDGTVLVGTVGHLAPIKGHDVFLRAAALVSARRPDVRFVIIGEDKSPE
                     MANRKSLETLISELNLNEIVSMPGWRDDMPAALSSLSLFVSAARSEPFGLAIVEAMAA
                     GLPVIATASEGALEII"
BASE COUNT          307 a          460 c          546 g          437 t
ORIGIN      
        1 ttttgaatgg tgtcgagctg cacgccctgc gattgatcat cgacgagctc gcgttcgggc
       61 caacgcgtcg cttctatgcg gcggcgcaga tcggtaagtt cggcttccgg cacctcgatc
      121 tgaaacgggc gaatcgcatt cgggtcgctg cttctttggg tcgcgctggt ttgactcata
      181 ctgttctcct tccgggtatc tttgttcgtt aatgcgtgta acgcgtgaac acgaagtcgc
      241 gatccttgat cgcctcatgg cagggatggc atttcttcag gtccgattcg gggccggggt
      301 tgccgtcctt atcaaattgc gcatagcccc agccgccggt cgtggcgtac tttttcgaat
      361 ccttgaccat gaactggagg taccacggcg gggcttcgcc ggcgacgaac gattgcgcgc
      421 ggccgaacgc tttgttgttc tcttcagacg gcacatgccg ccacgcaatg cggccgatga
      481 ttgctccttc agggaaggga agttttcctt cgcgataggt tttgattgcg acgtcgttgc
      541 cgaggatcgc gcggatgtcg ttgagattgc cttcttcgtg ggccactgaa acgagtttcc
      601 agtcgcgata gcctggcggt atttcggata cgaagatcga cgagatctgt tgattagcac
      661 gtccgggttg cagggttgtt gcggtgattg cggcggcgac agttagcgcg atggccagca
      721 ggaaagcgaa tcttttcaac atggtgcctc cttcttacga ggctgtgaga atactgcgcg
      781 gcgcgaaatg gcgaatcccc tagacaggta attttcagta cctcattcgg ggtaattact
      841 ttttggatcg cggtcagagt acactgcggg ttgatgagaa ttctgcaggt atgctccgtg
      901 acttcgttcg gcggtggcga acggcacttg gcagacctct cgcgcgcgct gaatgatctg
      961 ggccatgagg tttttgcggc gtcggttccc ggatcgccgc tgtcggatga attatcgttt
     1021 ctgcctcacg aacgcatgtt agcgttgaac aagcgcggct acgtgacaaa cgtaacgagt
     1081 cttgcgcggt ttgtgcgtgc gcatgaaatc gagatcgttc acgcgcacgc ggcgcgggat
     1141 tatcacctgg cggcgttggc ggtgaggatg gcgtcgcaga gccggctcgt gctcacgcga
     1201 catgcgttgt ttccgttgaa acgggttaac cggccgttgc tgagtggtgt tgggcgtgtg
     1261 atcgcggtgt cggaggcggt cgcagagagt gtgcggagta gcggtgtcat tgagtcttcg
     1321 aagatcactg tggtccacaa tgggattgac gtggatcgtt tcgagcgcac ggttggttcc
     1381 gcgcatgatg gtaccgtcct ggtgggaacg gtgggccacc tcgcgccgat caaaggccac
     1441 gacgtttttt tgcgcgcggc cgcgttagtc tccgcgcgtc gtccggatgt tcgtttcgtg
     1501 atcatcggcg aggacaagtc tcctgagatg gcgaaccgaa aatccctcga gactttaata
     1561 tccgaactca atctcaacga gatcgtctcc atgcccggct ggcgagacga catgcccgct
     1621 gctctctcat ctctttcact gtttgtctcc gccgcacgct ccgaaccctt cggcttagca
     1681 atcgttgaag caatggccgc cggactgccg gtgattgcaa ccgcatccga aggcgcgttg
     1741 gaaatcatcg
//
LOCUS       DASWTX010001352         3617 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_280645, whole genome shotgun sequence.
ACCESSION   DASWTX010001352 DASWTX010000000
VERSION     DASWTX010001352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3617
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280645"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..380)
                     /locus_tag="VGD38_20540"
     CDS             complement(<1..380)
                     /locus_tag="VGD38_20540"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: protein motif:HMM:NF014857.4"
                     /note="catalyzes the formation of
                     N(1)-(5-phospho-D-ribosyl)glycinamide from
                     5-phospho-D-ribosylamine and glycine in purine
                     biosynthesis; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEY0730485.1"
                     /translation="MAKLCQDKTMRKIFVLGSGGREHAITWALRNTSRAYLELFCAPG
                     NAGIAEVTKLVNIGVDKHVELAAFAESEGIDLTFVGPEAPLAAGIVDLFEAKGLPIVG
                     PGSAAARLEGSKIFAKEFMARHGVP"
     gene            complement(916..2787)
                     /locus_tag="VGD38_20545"
     CDS             complement(916..2787)
                     /locus_tag="VGD38_20545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730486.1"
                     /translation="MCLTGVDYFSTLGYQPGIAFLAAGALSPIATLILVLLTLFGALP
                     IYNKVAEESPYGEGSISMLEHLLSRWKGKLFVLVLLGFVATDFVITITLSAADATAHI
                     IENPFTPESLKHPVGVTLALIAFLGAIFLKGFKEAIGIAVALVAVYLLLNLIVIAFGL
                     FELATHPYHFPEWKQLLLTHPRVNGNAWMIVVVSLFLFPKLALGLSGFETGVAVMPLV
                     KGDDDLTEDQLHDIHTTRAGQVVDDKTQKLLRGRIRNTKKLLRTAALIMSTMLISSSL
                     VTAILIPPDKFAEGGEANGRAIAYLAHLFFGDVFGTLYDLSTILILWFAGASAMAGLL
                     SIVPRYLPRYGMAPEWARAARPLVIVITAIAFAVTVIFNADVDAQGGAYATGVLVLMT
                     SAAIAVTLAVRRKQGNWKPYLVIALVFVYTTIQNIHERPEGIKIASFFILTIIVASLF
                     SRVWRSTELRVERIQLDDKARQFIKDAAKGTIRIITNRRDTGDALEYQQKEHEKRTSN
                     HIPAGEPILFFEVTPGDASEFSGTLEIRGETVDGFRILRTESPAVPNAIAAFLLYLRD
                     EMGKLPHVYFGWSEGNPISYLLKYIAFGEGDTAPVTHEVLRQAEKDSSRRPIVHVGG"
     regulatory      complement(2989..3153)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00379"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cyclic di-AMP (ydaO/yuaA leader) riboswitch senses
                     the signaling molecule cyclic di-AMP; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="cyclic di-AMP"
                     /db_xref="RFAM:RF00379"
     gene            complement(3204..>3617)
                     /locus_tag="VGD38_20550"
     CDS             complement(3204..>3617)
                     /locus_tag="VGD38_20550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730487.1"
                     /translation="NRIDRGDVQEYEAKENEKRLDNHIPAGEPILFFEVTPGDASEFS
                     GVLQIRGEQVDRFQILRTESPAVPNAIAAFLLFIRNETGKLPHVYFGWSEGNPVSYLL
                     KYIAFGEGDTAPVTHEVLRQAEKDPDQRPIVHVGG"
BASE COUNT          824 a         1070 c          960 g          763 t
ORIGIN      
        1 ggtacaccgt gccgcgccat gaactccttg gcgaatatct tgctaccctc aagccgagcc
       61 gcggcactgc ccggacccac gatcggcaac cctttcgcct caaacaagtc gacgatgccc
      121 gcggcgagcg gcgcctccgg ccctacgaac gtcaggtcaa ttccttccga ctcggcaaac
      181 gccgcaagtt ccacatgttt gtccacacca atgtttacaa gcttcgtgac ttcagcgatc
      241 ccggcgtttc cgggcgcgca aaacagctcc aaatacgcac gggatgtgtt cctaagtgcc
      301 caggttatgg cgtgctcgcg tccccccgac cccaaaacaa agatttttct catggtttta
      361 tcttgacaca gtttcgccat agttatatac caattgacca aacggagccc cgtgcgggct
      421 gggatccttt acctcgcttg gtggacgacc gaaagcgtcc tttctttgac gcgctttctt
      481 tattcacccg ccgaatcgct gttactagtg ttacgtacga cccagggagt tggatcatgt
      541 tacagacgga agcggcccac gcattggaaa cacacccgga aagtgaatac gaggatcgtg
      601 ctatcaagtg cgtcgactgc aacgagaatt tcatctggac tgcgggcgaa caggttttct
      661 tccacgacaa gggtttgaaa aacgaaccca aacgctgcaa accctgtaaa caagctaaaa
      721 acgagcggtt ggcggcgata gcggcagcac agtcgtcggg agtgcggcaa cgaatcgagg
      781 tctcagttca atgcgcccaa tgcggacaac agacaactgt cccgttctat ccttcgcaag
      841 gacggccagt ttactgtcgc tcctgtttcc ttgcgggcaa gacatccgaa gccgctcagg
      901 tctagataaa ctttcctatc ctccaacatg cacgattgga cgtctactcg agtctttttc
      961 tgcttgtcgt aatacctcgt gtgtaaccgg cgcagtatca ccttcaccaa acgcgatgta
     1021 ctttagcagg taggagatcg ggtttccctc gctccagccg aaataaacgt gcggcagctt
     1081 tcccatctcg tcacgcaaat aaagtagaaa agccgcgatc gcattcggaa cggccggcga
     1141 ttccgtgcgc agaatgcgaa aaccgtcgac cgtctcgcca cgaatttcga gcgtgccgga
     1201 aaactccgac gcgtcgcccg gcgtgacttc aaaaaacaaa atcggctcgc cggctgggat
     1261 gtgattgctc gtccgcttct cgtgttcttt ctgttggtac tcgagcgcgt cgccggtgtc
     1321 gcggcggttg gtaatgatcc gaatcgttcc cttggcggcg tccttaataa actgccgcgc
     1381 tttgtcgtcg agctgaatgc gttcgacgcg cagctcggtt gaacgccaga cgcgcgaaaa
     1441 caacgacgcc acaatgatcg tcagaataaa gaacgacgcg atcttgatac cttcgggccg
     1501 ttcgtgaatg ttctgaatcg tcgtgtagac gaagacgagg gcgattacga gatacggttt
     1561 ccagtttccc tgcttacgac gcaccgcgag cgttacggca atcgctgctg aagtcattaa
     1621 gacgagcacc ccggtcgcgt aagcgccgcc ctgcgcgtcc acgtctgcgt tgaagatcac
     1681 tgtgacggcg aaagcgatcg cggtgatcac aatcacaagc ggtcgtgcgg ccctggccca
     1741 ttccggcgcc atgccgtaac gcggcagata acgcggcaca atactcaaca aacccgccat
     1801 cgccgacgcg cccgcaaacc acagaatcaa tatcgtgctc aggtcgtaaa gagtaccgaa
     1861 aacgtcgcca aagaacagat gggccagata cgcgatcgcg cggccgtttg cttcgcctcc
     1921 ctcagcgaac ttgtcaggcg gaatcaggat ggcggttaca agactgctgc tgatcaacat
     1981 cgtgctcatg atcagcgccg ccgtacgcag cagctttttc gtgttgcgga tgcggccgcg
     2041 tagtagtttt tgcgtcttgt cgtcgacaac ctgacccgcg cgagtggtgt gaatgtcgtg
     2101 caactgatct tcggtaagat cgtcatcgcc tttcaccagc ggcatcaccg ccacgcctgt
     2161 ttcgaagcct gagagtccca gcgcgagctt tggaaaaaga aacaacgaca ccacgacgat
     2221 catccacgca ttcccgttca cgcgcgggtg cgtcaacagc aactgcttcc actcgggaaa
     2281 gtgatacgga tgtgtcgcga gctcgaacaa gccaaacgcg atcacgatga gattgagcag
     2341 caaataaacg gcaaccaacg ccaccgcgat cccgatcgct tccttaaaac ctttaagaaa
     2401 gatcgcgccg agaaacgcga tcaacgcgag cgtgacgccg accggatgtt tcaacgattc
     2461 gggcgtaaac ggattttcga tgatgtgtgc cgtcgcgtcc gccgcggaaa gcgtgatcgt
     2521 gatgacgaag tcggtcgcga cgaaacccag caacacgagc acgaagagtt tgcctttcca
     2581 gcgcgacagc agatgttcga gcatcgagat cgagccttcg ccgtacgggc tctcttcagc
     2641 gactttgttg taaatgggca acgcgccaaa cagtgtcagc aggaccagga tgagcgtcgc
     2701 aatgggcgag agtgcgccgg cggcgagaaa cgcgatgccg ggttgataac cgagagtcga
     2761 gaagtagtcg actccggtca aacacatcac ttgccaccac gagtgttgtt tgtgtggtgc
     2821 agcgtgagcg tcttgttgtg cggaacctcg atataaccag agcttgaaac gccgtccggc
     2881 agctcttttg ggtaacagat tgatcattgt ttgcagccga gcacagactc gggtgcgcac
     2941 aaaataaaaa ggcacggggc aatgagcccc gcgcctttcg atcgcggcac tgcccttcct
     3001 tttggcctac gaggttagct gtcgggctcg aactggaagt gttcttcgcg agcaaacgtg
     3061 gctcagcgat tcgccccgtg tttcgtttga aacgttggtt cccccgcgtt gctcagccgt
     3121 gcgcggcacg agcaacttcg gcagacatta aattgtcaac ggcagtgatg ttactcccct
     3181 gcgccgccgg aatcaatctt cctttatcca cccacgtgca cgatcgggcg ctggtccgga
     3241 tccttttccg cctggcgcaa aacctcgtgc gtcaccggcg cagtgtcgcc ctcgccaaag
     3301 gcgatgtact tcaaaaggta cgaaaccggg tttccttcac tccagccaaa ataaacgtgc
     3361 ggcagtttcc cagtctcatt acgaataaac aacagaaacg cggcaatcgc gttcggcacc
     3421 gcgggcgatt ccgtacgcag gatctgaaac ctgtccacct gctcgccgcg gatctgcagc
     3481 actccggaaa actccgacgc atctcccggc gtcacttcga agaacaagat cggctcaccc
     3541 gcaggaatat gattgtcgag ccgtttctcg ttctctttcg cttcgtactc ctgcacgtct
     3601 ccgcgatcga tgcggtt
//
LOCUS       DASWTX010001353         2327 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_280677, whole genome shotgun sequence.
ACCESSION   DASWTX010001353 DASWTX010000000
VERSION     DASWTX010001353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2327)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2327
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280677"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(100..1827)
                     /locus_tag="VGD38_20555"
     CDS             complement(100..1827)
                     /locus_tag="VGD38_20555"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family metallopeptidase"
                     /protein_id="HEY0730488.1"
                     /translation="MKKRIHVMVSFAAVLSFAFACTAPTNVNTNSGETSSSVPADLKP
                     ALDSITANDIMQHTKVMSADEYEGRGPGTKGEELTVKYLTEQFQRIGLKPGNPDGTFV
                     QKVPLVGFTGVPTASFTVGAKQINLTFPQDYVAVSRRFVPESKVENSDMVFVGYGVVA
                     PEYGWDDYKGLDVRGKTIVMLINDPQVPSANDPATLDDKLFKGKAMTYYGRWTYKYEI
                     AAEKGAAAAIIIHETGPAGYGYEVVSGSWSRENFDIQTPDKNMGRPAVESWITTDRAK
                     ELFTASGQDFDALKKAAVSKDFKPVVLNAKANMTVKNTMREINSNNVIGKLEGSDPAL
                     KNEYVIYTAHWDHLGLDPKLTGDQIYNGALDNASGTAALIEIAEAFTKLATPPKRSIL
                     FLAVTAEEKGLLGAKYYAEHPLYPLNKTLANINMDGVNQWGRTTDITMVGDDNSTLID
                     LLREAATAQKRAVNPDPESEKGFYYRSDHFEFAKQGVPALYTDSGVNYEGKDAAFSKD
                     KRDEYTKNDYHTVSDEIKPDWDLTGAVDDAQLLTTIGYRVAQGDKYPEWKAGSEFKAK
                     RDETMKATD"
     gene            1976..>2327
                     /locus_tag="VGD38_20560"
     CDS             1976..>2327
                     /locus_tag="VGD38_20560"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0730489.1"
                     /translation="MFRALILVILVSGSCALTTAQDSQAERLVREGVEFTSAGQFAQA
                     IRAFEEAIKLEPDSGAAYAALGRAYFKMREWRRAAAYLRRAAALNAQQKHAKNSLPVS
                     EVAVVEPVRPTAQPA"
BASE COUNT          458 a          641 c          649 g          579 t
ORIGIN      
        1 gtctatgtga cttatccaca ctggatggat gttcacaaac aatccgagca tgctgcgctg
       61 ctcgacgatt ttcacccgcc ttctcggtag cggcgaaggt caatcagtag ccttcatcgt
      121 ctcgtcgcgc ttggctttga attccgatcc ggctttccat tccggatact tgtcgccttg
      181 cgccacgcga taaccgatcg tcgtcagcaa ctgcgcgtcg tcaacagcgc cggttagatc
      241 ccagtcgggt ttaatctcgt cggaaaccgt gtggtaatca ttcttggtgt attcgtcgcg
      301 cttgtctttg ctgaacgccg cgtctttccc ctcgtagttc actcccgaat cggtgtagag
      361 cgccggcact ccctgtttcg caaactcaaa atgatccgag cggtagtaaa aacccttctc
      421 tgattcggga tcgggattta ctgcccgctt ctgcgcggtg gcggcttcac gcagcaggtc
      481 gatcagggtg ctgttgtcgt cgcccaccat cgtgatgtcc gtggtcctgc cccactgatt
      541 cacgccgtcc atgttgatgt ttgcgagggt cttgttcagc ggatacaaag gatgctcagc
      601 gtaatacttc gcgccgagca agcctttctc ttcggctgtc accgccagga acaaaatgga
      661 tcgtttcggc ggtgtggcga gtttcgtgaa cgcttcagca atctcgatca atgcggcagt
      721 gccggaggcg ttatcgagcg cgccgttgta aatctggtcg ccggtcagtt ttggatcgag
      781 gcccaggtga tcccagtgcg ccgtgtagat aacgtactcg ttcttcagcg ccggatcgga
      841 gccttcgagc ttgccgatga cgttgttcga attgatctcg cgcatcgtgt tcttgaccgt
      901 catgtttgct tttgcattca gcacgaccgg cttgaagtcc ttcgagactg ctgctttttt
      961 caatgcgtcg aaatcctgac cgctggcggt aaacaattct ttcgcgcgat cggtcgtgat
     1021 ccacgattcg accgccggac gtcccatgtt cttgtcgggc gtttgaatat cgaagttctc
     1081 acgagaccag cttccggaaa caacttcata gccataacca gccgggccgg tttcgtgaat
     1141 gatgattgcg gcagcagcgc ccttttccgc ggcgatctca tacttgtagg tccaacggcc
     1201 gtagtacgtc atcgctttgc ccttgaacag cttgtcgtcg agcgtcgcgg gatcgttcgc
     1261 gctcgggacc tgcggatcgt tgatcagcat gacgattgtc ttgccgcgca cgtccaaacc
     1321 tttgtagtcg tcccaaccgt actccggcgc gactacgcca tagccaacaa agaccatgtc
     1381 ggaattctca accttcgact ccggaacgaa gcggcgtgag accgcaacgt agtcctgtgg
     1441 aaacgtcagg ttgatctgct tggccccgac agtgaacgaa gccgttggca cgcccgtgaa
     1501 cccaacgagc ggaaccttct gaacaaacgt gccgtccggg ttccccggct tcaggccgat
     1561 gcgttgaaac tgttcggtta gatacttgac ggtgagctct tcgcctttgg ttcctgggcc
     1621 acggccttcg tactcatccg ccgacatcac cttcgtgtgt tgcatgatgt cgtttgcggt
     1681 gattgagtcc agagcgggct tcaagtcagc cggaactgag ctgctggttt caccggaatt
     1741 tgtgttcacg ttggtcggag cagtacacgc gaatgcgaaa ctgagcaccg cggcgaacga
     1801 aaccatgacg tggattcgct tcttcatatt gataggtcct cgattgcgat gttggagttg
     1861 ataggatttt ttatgctgaa acagggccac aagtcaaact gatttgcaac actattgaaa
     1921 cgtgggttga acatccatag tggtataaaa caccatgcgt gcaagggggc cggcaatgtt
     1981 cagggcgtta attcttgtga ttctcgtcag tggttcttgt gcgctgacga cggcgcagga
     2041 ttcacaagct gagcgattgg tgcgcgaagg cgtcgagttc acaagcgccg gacagttcgc
     2101 gcaagcgata cgcgcgtttg aagaagcgat caaattggag ccggattccg gtgcggcgta
     2161 cgccgctttg ggacgcgcgt atttcaagat gcgcgagtgg cgcagggctg ccgcttacct
     2221 gcgtcgagcg gccgcgttga acgcgcagca gaagcacgca aagaatagtt tacccgttag
     2281 tgaagtcgct gtagtcgaac ctgttcgacc aacagcacaa cccgcgc
//
LOCUS       DASWTX010001354         4418 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_146950, whole genome shotgun sequence.
ACCESSION   DASWTX010001354 DASWTX010000000
VERSION     DASWTX010001354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4418)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4418)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4418
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146950"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1292)
                     /locus_tag="VGD38_20565"
     CDS             complement(<1..1292)
                     /locus_tag="VGD38_20565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730490.1"
                     /translation="MPDPAKLVPAKATIRAYQVGFGDCFLLTFTYPADENNSVQERHV
                     LIDFGSTGMPEGVVAAKQMMAVANDIKDRCNGKLQIVVATHRHKDHISGFTTKKDGSG
                     TGDVIAKLQPDIVIQPWTEDPFLKDAKLVERAVKPSAAQPLQMKQAFYVSSLTKMNAL
                     ASTIAAEIEHLGSKSFMPALSPELKEQIEFLSDDNSLPNQSAVVNLASMGKNHYVNFG
                     YKLDVTQMLPGVKIHVLGPPNLNQHAKIRTQKAKDENEFWMLYGAAGDFWKLQAASGD
                     LCSSLSAGNGRLFPDADVFQDFLPSHNRWFVRQLRSLRGEQLLGLVRILDRAMNNTSV
                     ILLFEFGDKKLLFPGDAQIENWEFALNDPKAAELLKDVCVYKVGHHGSRNATPKSLWG
                     QFSLKKDEEEKKNGAKRMTTLNSTLKGKHGHTENNTEVP"
     gene            complement(1295..2698)
                     /locus_tag="VGD38_20570"
     CDS             complement(1295..2698)
                     /locus_tag="VGD38_20570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730491.1"
                     /translation="MSWGFRGHQIHIAPHAFADANAFYSKEDQALLFGYFKGREGQMV
                     FSCLSHDVVAHETTHAILDGLRNRYTDPSSPEQAGFHEGFADVVALLSVFSLKDVVGT
                     LLQKDFTQTKTTSEANLIHSDYLELDTLKESVLIGLAEQMGAEMLGVRGDRADALRRS
                     VKLPELKPGQIDEVEEFQEPHRRGEILVAAMLNAFLHAWRARIHKLKGGRSRVMLDLE
                     LVVEQGADAANQLLTMAIRALDYTPPTDLQFSDYLSALITADKELVPDDTKYGYRKIL
                     LATFAKYGVEPASINSIDGSWEGCDAKLTYDRSHFESMMREPDEVFRFIWENREALKL
                     HDQAYTKVISVRPCMRIGPDGFALRETVAEYIQMMTIQAQELQYFDPPIGKPEGLDGN
                     REVTIYGGGALIFDEYGRLKYHINNRVENVARQTPRLKYLWKCGYFDAASATRTAFAR
                     LHLNRTLNLRTRASEVF"
     gene            complement(3116..3883)
                     /locus_tag="VGD38_20575"
     CDS             complement(3116..3883)
                     /locus_tag="VGD38_20575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730492.1"
                     /translation="MIGSSVPLEIKNNADLKRLLANEGESNTAWLERAFQEGVAKEGS
                     IVLLGGNSMADFRVRVAQSHLRFDLTPSHWSLVGVLTADNKLYTVPLEITGDISEIPH
                     VNAVREFDLSAYDDAGRFPNIAVIQVTTTPEKVVKYIDAMKLQRGLIDLPALVLSWLG
                     FVWCVGKRGNPLLDGDGLPSAVFAETLFGLAGIELTPGLATASTCPEAIWQAAKWWAS
                     FYEQTSSVAAAVHAQSMVPKGCFVLRQPSAAIRPREQ"
     gene            complement(3893..>4418)
                     /locus_tag="VGD38_20580"
     CDS             complement(3893..>4418)
                     /locus_tag="VGD38_20580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730493.1"
                     /translation="DIAQLQAWVAGLRGLGVLVIGQPVLSGRAGWQGNLTDWNLPDYT
                     QYGDLIRALDRTEHSILILTGDVHYGRVARCELKPGVELVEVISSPTALVNKLVGGKW
                     NEAPARYPAFDVPGMFSRAVDTDLNFTLTDNHFLTLAFSSVAQRTRVLIKAWPIVGEG
                     RPVNPIFVMERTLG"
BASE COUNT          981 a         1242 c         1170 g         1025 t
ORIGIN      
        1 gggacttcgg tattgttttc ggtgtgcccg tgcttgccct tcaacgtgga attaagcgtc
       61 gtcatccgct tcgctccgtt cttcttctcc tcttcatcct tctttaagga gaattgcccc
      121 cagagagatt tcggagtcgc atttcggctt ccgtgatggc ccactttgta gacacacaca
      181 tccttcagca gttccgccgc ttttggatcg ttcagcgcga actcccaatt ctcgatctgc
      241 gcatcacccg gaaagagcag tttcttgtcg ccgaactcga acagcagtat gacgctggtg
      301 ttgttcatgg cccggtccaa aatgcgcacg aggccgagga gttgctcgcc gcgcaaagat
      361 ctcaactgac gaacgaacca gcgattatgt gacggtaaaa aatcctggaa tacgtccgca
      421 tcaggaaaca aacgaccgtt gccggcagac aaactgctac acaaatctcc ggaagcggcc
      481 tgcaacttcc aaaagtcacc agccgccccg taaagcatcc agaactcgtt ttcatctttc
      541 gccttttggg ttcggatctt tgcatgttga ttcaggttcg gcggaccaag aacatgtatc
      601 ttcacaccgg gcaacatttg agtgacgtcg agcttatacc cgaagtttac gtaatggttt
      661 ttgcccatcg aagctagatt caccaccgcc gactgattcg gcaaactgtt atcgtcacta
      721 agaaactcta tctgttcttt cagttcaggc gacagtgccg gcatgaaact ttttgaaccg
      781 aggtgttcga tctcggcggc gatcgtactg gccagtgcat tcattttcgt cagcgaggag
      841 acataaaaag cctgcttcat ttgcaaaggc tgagcggctg aaggtttcac agctctttcg
      901 accagtttgg catctttaag gaacggatct tccgtccacg gctggatcac gatatccggc
      961 tgaagcttgg cgatgacgtc tccggtgccg cttccgtcct tcttggttgt aaaaccgctg
     1021 atgtgatctt tgtgacgatg cgttgcgact acgatctgta acttaccgtt gcaccggtcc
     1081 ttgatatcgt tcgcaacggc catcatttgt ttggcggcga ctacaccctc gggcatgccg
     1141 gtactcccga aatcgatcag aacgtgccgc tcctgtacgg agttgttttc gtctgcagga
     1201 taggtgaacg tgagcagaaa acagtcgccg aagccgactt gataagcgcg gatcgttgct
     1261 ttggcaggca ctagctttgc cggatcaggc atggtcagaa aacctccgaa gctcgagttc
     1321 ttaaattcag agtgcggttc agatgcagtc gcgcaaaagc ggtccgcgtt gcactcgcag
     1381 catcaaaata gccgcacttc caaaggtact tcagtcgcgg cgtctgccgc gcaacattct
     1441 cgacgcggtt gttgatgtga tatttcaggc gcccatactc gtcgaaaatc aatgcgccac
     1501 caccgtaaat ggtgacttcg cggttcccgt ccagaccctc gggttttcca atgggaggat
     1561 cgaaatactg aagttcctgc gcctgtatcg tcatcatctg gatgtattca gctaccgtct
     1621 cacgaagcgc aaatccatcg ggtccgattc gcatgcaagg ccgcactgag atcactttcg
     1681 tgtatgcctg atcgtgcagc ttcaacgcct cacggttttc ccaaatgaag cggaagacct
     1741 cgtccggctc tctcatcatc gactcgaaat gcgagcgatc gtaggtaagc tttgcgtcac
     1801 agccttccca actgccatcg atggaattga tgcttgccgg ttcaactcca tatttcgcaa
     1861 aagtagccaa aagaattttg cgataaccgt atttggtatc gtcaggcaca agctctttgt
     1921 cagcggtgat cagcgcgctc agataatcgg agaactgcag gtcggttgga ggtgtgtagt
     1981 ccaaagcccg gatggccatc gtcagcagtt ggttggcggc gtctgccccc tgctcaacga
     2041 cgagctcaag atccaacatc acgcgtgacc ttccgccttt aagcttatgt attcgggcgc
     2101 gccaggcgtg caggaaggca ttgagcatcg cggccactag aatctcgccg cgccgatgtg
     2161 gctcctgaaa ttcttcgact tcatcaatct ggccgggctt gagttccggc agctttaccg
     2221 agcggcgcag ggcgtcggcc cgatcgccac ggactcctaa catctccgcg cccatttgct
     2281 ccgccaatcc gatcaacacg gattctttca gcgtgtcgag ttccaggtag tctgaatgga
     2341 tcagattagc ttccgacgta gtcttcgttt gagtgaaatc cttctgcaac agagtgccaa
     2401 caacatcctt gagagaaaaa acagagagca gcgcaacgac gtcggcgaat ccctcgtgga
     2461 accccgcttg ttcgggtgaa gatggatcgg tgtagcgatt gcgcaacccg tcgaggatgg
     2521 catgcgttgt ctcgtgggcc accacatcgt gagagagaca actgaaaacc atttgtccct
     2581 cccttccttt gaagtacccg aagaggagag cctgatcttc ctttgaatag aaagcattgg
     2641 cgtcggcgaa cgcatgcggc gcgatgtgga tttgatgacc gcgaaaaccc cagctcacgc
     2701 gccggcccaa tgcgaactca aaccgcgcga gagtcttcat cacgatcgcg tagacgttct
     2761 gctgatgaaa gcggggttct gtgagtatcc agtcgctgtc gggcttatcg gcgacgtgtc
     2821 gcgcgaacgg atcgacgtac gagcctcgct gaaggttcgg atagtgtatc ggctgataaa
     2881 gaacgccgga cgacgtgtcg tagtcgatca cctgtattcg atagccacgc gggcccggag
     2941 cgatttcttc agccggtata tcgacctggg tcgtgagaat ttggccgttg accttaacgc
     3001 tcgggtcctg cgctacgatc gtcaaccgcc gcgtgcgtgg ttttgcgata ggtatcatgt
     3061 gagaaataca aagtgggagt gagcgttagt aatagatcct attaggacct cgggtctact
     3121 gttccctcgg tctgatcgcg gcgcttggtt gacgaagaac aaagcaacct ttaggtacca
     3181 tcgattgcgc atgaaccgcc gcggccacgc tgctggtttg ctcgtagaac gaagcccacc
     3241 atttcgctgc ctgccagatt gcttcaggac acgtcgaggc ggtagccaga cccggcgtta
     3301 actcgatgcc ggcgagacca aacagcgttt ccgcaaagac agcgctcggt aaaccatcgc
     3361 cgtccagtaa cggattgccg cgtttgccga cacaccacac gaagccgagc cacgacaaca
     3421 cgagcgccgg aagatcgatc agtccgcgtt gcaacttcat cgcgtcgatg tatttcacga
     3481 ccttctcggg agtggtcgtc acttgaatga cggcgatgtt gggaaacctc ccggcgtcgt
     3541 catacgccga caaatcaaac tctcgaaccg cgttgacgtg cggaatttcc gagatgtcgc
     3601 ccgtgatctc gagcggaact gtgtacagct tgttgtcggc agtcagaact ccaaccagag
     3661 accagtggct gggagtcaga tcaaaacgca ggtgcgattg cgcgacgcgc acgcgaaagt
     3721 cagccatcga attgccgccg agaagcacga tgcttccttc tttggcaact ccctcctgga
     3781 aagcgcgctc gagccacgcc gtgttcgact cgccttcgtt cgcgagcagt ctcttcaggt
     3841 ccgcattgtt tttgatttcc aaaggaacac tactaccaat catagggcct cctcatccga
     3901 gtgttctttc catgacaaag attggattaa ccgggcgtcc ctcacccact atcggccatg
     3961 ctttgataag tactcgcgtg cgttgggcca cggacgaaaa agcgagcgtc agaaaatggt
     4021 tatccgttaa agtgaagttc aggtcggtgt cgacggcgcg actgaacatg ccaggcacat
     4081 caaacgccgg atagcgtgcc ggcgcttcgt tccatttgcc gccgacaagc ttgttcacca
     4141 gggcagtggg cgatgaaatt acttcgacga gctcgactcc cggtttgagt tcacagcgcg
     4201 cgacgcgccc gtagtgcacg tcgcccgtca aaataaggat cgaatgctcg gtacgatcga
     4261 gcgcgcgaat caagtcgccg tactgcgtgt aatcgggaag gttccagtct gttaagttgc
     4321 cctgccatcc cgcgcggccg ctcaaaacgg gctgcccgat aaccagcacg ccaagaccgc
     4381 gcaatcccgc gacccatgct tgcaactgag cgatatcg
//
LOCUS       DASWTX010001355         1970 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_84282, whole genome shotgun sequence.
ACCESSION   DASWTX010001355 DASWTX010000000
VERSION     DASWTX010001355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1970)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1970)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1970
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84282"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..765
                     /gene="rnc"
                     /locus_tag="VGD38_20585"
     CDS             <1..765
                     /gene="rnc"
                     /locus_tag="VGD38_20585"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR02191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEY0730494.1"
                     /translation="FVIIRCALKNPETIPDLDLLEKVLAYNFKDRALLERAITHRSWA
                     HEKVPPGDERQARKLHNESLEFLGDSVLGLIVSNYLCNSYPAGTEGELSRMKHRLVSA
                     PTLAEASQGLKLGEFLRFGRGEEKSGGRQKNALLADVFEAITGAIFLDGGLEAATQFV
                     CRALRTELEAADPLSAAKADYKTMLQEKLQAERRSAPRYVVIETLGPPHQRIFHVEVS
                     WDSGSIRGSGHSIKAAEAAAARAALEAMADLAQEII"
     gene            834..1733
                     /gene="lepB"
                     /locus_tag="VGD38_20590"
     CDS             834..1733
                     /gene="lepB"
                     /locus_tag="VGD38_20590"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:NF021981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEY0730495.1"
                     /translation="MASNRTTDKVTSEDAAPQTEAKPFSFSRLINRNGHEKEAPPPPV
                     QGPPKTVWREYFESAVVTVVMALFGMTFIVQAVKVPTGSMQNTITIGDHLLVNKFIFA
                     PGESLPFLPQREIRRGDIIVFKYPGNKYEPERDQRPDNTPILTNYVKRVIGLPGDRIR
                     IEGKDVIVNGEILPEHRIVVEERGDKAPLHLMTPETPPGPGETYNVFHKSYFDSDGRE
                     RNAFEGKDELVVPEASYFVMGDNRDNSEDSRYWGFVPRDLVIGRAMFVYWSYDESAES
                     SGWGFIVDFFMNTRWSRTGTLVK"
     gene            1786..>1970
                     /locus_tag="VGD38_20595"
     CDS             1786..>1970
                     /locus_tag="VGD38_20595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730496.1"
                     /translation="MLVCAGNVWAQKRTTKKKPTTPPPVSELTKLRDEFVKATNEYKA
                     SLEKLVVFEEANVKRAE"
BASE COUNT          455 a          530 c          571 g          414 t
ORIGIN      
        1 tttgttataa tccgctgcgc tttgaaaaat cccgaaacga ttcccgatct cgacctcctc
       61 gaaaaggttc tcgcttacaa cttcaaagat cgtgctttgc tcgaacgggc catcactcat
      121 cgttcgtggg cacacgagaa agttccgccc ggtgacgaac ggcaggcgcg caaacttcac
      181 aacgagtcgc tcgagttctt aggggattct gttctcggtc ttatcgtctc aaattacctt
      241 tgcaactcat atccggcagg caccgaaggt gagctctcgc gcatgaagca ccgtttggtg
      301 agtgcgccga cgctcgcgga agcatctcaa ggattgaagc tcggcgagtt tctgcgcttc
      361 gggcgtggtg aagagaagag tggcggccgg caaaagaatg ctttgctggc ggacgtgttt
      421 gaagcgatca ccggcgcgat ctttctcgac ggtggactcg aggcagccac gcaattcgtt
      481 tgtcgcgcac tgagaacaga gctcgaagcc gcggatccgc tgagcgccgc gaaggcggat
      541 tacaagacga tgttgcagga gaagcttcag gccgaacgcc gctcggcgcc gcgatacgtg
      601 gtaatcgaaa ccctcggtcc gccgcatcaa cgtatctttc acgtggaggt ttcgtgggac
      661 agcggcagca ttcgcggctc cggccattcg atcaaagcgg cggaagcggc agccgcgcga
      721 gcggcgttgg aggcgatggc tgaccttgca caggagatta tttaaggagc agacgacggg
      781 aactgtggtg ccagcttgac caccgcaagc aacgtatcta ggatgttttt tcaatggcca
      841 gtaatcgaac caccgacaaa gtaacctcag aagatgcggc gcctcagacc gaggcgaagc
      901 ctttctcttt ttcacgtctc atcaatcgca acggtcacga aaaggaagct ccgcccccac
      961 cggtgcaggg cccgccgaaa accgtttggc gcgaatattt cgaatcggct gtcgtgacgg
     1021 tggtgatggc tttgtttggt atgaccttca tcgtgcaggc ggtgaaggtg ccgaccggat
     1081 cgatgcagaa cacgattacg atcggcgatc acctgctggt caataaattt atcttcgcgc
     1141 cgggcgagtc gttgccgttt ctgccgcagc gcgagattcg ccggggcgac atcatcgtct
     1201 tcaagtaccc cggtaataaa tatgaacccg aacgcgatca gcgtccggac aacacgccga
     1261 tcctgacgaa ttacgtgaaa cgtgtgattg gtctgcccgg cgatcgcatt cgcatcgaag
     1321 gcaaggacgt catcgtcaac ggcgagattc ttcccgagca caggatcgta gtcgaggagc
     1381 gcggcgacaa agcgccattg catctgatga cgcccgaaac gccgcctggg ccgggagaga
     1441 cctacaacgt ttttcacaaa tcttattttg attccgacgg acgcgagcgt aatgcattcg
     1501 aaggtaaaga tgagctcgta gtgcctgaag ccagttactt cgtgatgggc gacaatcgcg
     1561 ataacagtga agacagccgc tactgggggt tcgttcctcg cgatctcgtg atcggccgcg
     1621 cgatgtttgt ctactggtct tacgacgaga gtgcggaatc gagtggttgg ggattcatcg
     1681 tagacttttt catgaatact cgctggagcc gtaccggcac gttggtgaag tagtgtgtac
     1741 cgccattatc aaacgccaat cctttcgtgc tttcttacgc tgacggtgct tgtctgcgcc
     1801 ggcaacgtct gggcgcagaa gcgaactacc aaaaagaaac caacaacccc gccgccggtc
     1861 agtgagttaa ccaaactccg cgacgagttc gtcaaagcca cgaacgaata caaggcgagc
     1921 ctggaaaagc tcgtcgtgtt cgaggaagcg aacgtaaagc gagcggaaga
//
LOCUS       DASWTX010001356         1893 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_17132, whole genome shotgun sequence.
ACCESSION   DASWTX010001356 DASWTX010000000
VERSION     DASWTX010001356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1893)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1893)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1893
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17132"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            93..995
                     /locus_tag="VGD38_20600"
     CDS             93..995
                     /locus_tag="VGD38_20600"
                     /inference="COORDINATES: protein motif:HMM:TIGR04222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR04222 domain-containing membrane protein"
                     /protein_id="HEY0730497.1"
                     /translation="MNPFDLTGPEFLLFFIGLSSLSIVALVVTRKIAERSAAPKLDLS
                     DPYLIAYLRGSEPETLRVAAVSLIDRGLLVATGTQLKAAEKAAPEAVRHPIEKELLRK
                     FKRADEASSIFDDSRLKATCKPYEETLKNVGLLPNKEIVRARWTRLYIACGILGGVAI
                     VKIMIALERGRTNVWFLIILAIVAIIVAAKISFPRLTESGKAMLADLQNLYAGLRDRA
                     SFLRAGGATIEPMMLAAVFGVAALESTDFAFTRTLFPRAQAADTGSSTWGSSSSCGSS
                     CGSSSSCGSSCGGGCGGGCGGCGG"
     gene            922..1848
                     /locus_tag="VGD38_20605"
     CDS             922..1848
                     /locus_tag="VGD38_20605"
                     /inference="COORDINATES: protein motif:HMM:NF003818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 domain-containing protein"
                     /protein_id="HEY0730498.1"
                     /translation="MAAVRRVVARVAAAAAVAVVVVEDEMSADRFGLGWRPRLAAGIL
                     ANLDRIDIVEVIADDYFRAPRHERRALQTLAAQTPVTLHGVSLGLASAVPVETRRLED
                     MARLCEEVKPEFWSEHLAFVRGGGIEIGHLAAPPRTEATIEGALANLARAKQIAGVAP
                     QVENVATLIDPPGSDRDEAAWLSAIIRNSESKLLLDLHNLYANSLNFHFDPVEFISKV
                     PTEGIKTIHLAGGKWIGRNGAQRLLDDHLHDVPDPVYDLLEEVAARAPQSLTLILERD
                     GNFPSIESLLAQLDRARQALTRGRARARGAAA"
BASE COUNT          347 a          527 c          608 g          411 t
ORIGIN      
        1 cacccggcgc cgcggcgccc gctctcttcc atctaatcga attggcccac gagatgtggg
       61 cgcgcgccgc tgaactaaag tgaggcgaca aaatgaatcc cttcgatctt accggcccgg
      121 agtttctgct cttcttcatc ggcttgagtt cgctctcgat cgttgcgttg gtagtcacgc
      181 gaaagattgc cgaaagatct gctgcaccaa aactcgatct ctccgatccg tatctgattg
      241 cttacctgcg tggctctgag ccggagacgt tgcgtgtagc ggccgtttcg ctgatcgatc
      301 gcggcctgct tgtggccacc ggaacacagc tcaaagcagc agagaaagcc gcgcctgaag
      361 cggtgcgtca cccgatcgag aaagagttgt tgcgaaagtt caaacgcgct gatgaagcgt
      421 catcgatttt cgacgactcg cgtttgaaag cgacgtgcaa gccgtacgaa gagacgctga
      481 agaacgtcgg cctgctgccg aacaaagaga ttgtcagagc gcggtggacg cgcctgtata
      541 ttgcgtgtgg cattctcggc ggcgtggcga tcgtgaagat tatgatcgcg ctcgaacgcg
      601 gccgcacgaa cgtttggttt ctgatcatcc tggcgatcgt ggcgattatc gtcgcggcta
      661 agatctcgtt tccgcggttg acggagagtg gtaaggccat gctcgcggac ttgcagaatc
      721 tttatgccgg gttgagggat cgggcgtcgt tcctgcgagc gggcggcgcg acgatcgagc
      781 cgatgatgct cgctgccgtg tttggcgtag cggctttgga aagcaccgac tttgccttta
      841 cgcgcactct gtttccacgc gcacaggccg ccgataccgg atcatcaacg tggggctcga
      901 gttcgagttg cggctcttcg tgtggcagca gttcgtcgtg tggtagctcg tgtggcggcg
      961 gctgcggcgg tggctgtggt ggttgtggag gatgagatga gcgcggatcg ttttggtctc
     1021 ggttggcggc cacggctcgc ggcgggtatt ctcgcgaacc tcgaccgcat cgacatcgtc
     1081 gaggtgattg ccgacgatta ctttcgcgcg ccgcgtcacg agcgccgtgc gttgcaaact
     1141 ctggcggcgc aaacacccgt cacgttgcat ggtgtgtcgc ttgggttagc atctgcggtt
     1201 ccggttgaga cgagacgttt ggaggacatg gcgcggcttt gtgaagaagt gaagcctgag
     1261 ttctggtcgg agcatctggc gttcgtgcgc ggcggcggga tcgagatcgg tcatctcgcg
     1321 gcgccgccgc gaactgaagc aacgatcgaa ggcgcgctgg cgaaccttgc gcgtgcgaaa
     1381 cagatcgccg gtgttgcgcc gcaggtcgag aacgtggcga cgctgatcga tccaccgggc
     1441 agcgatcgtg atgaggcggc gtggttgtcg gcgatcattc gaaactcgga aagcaagttg
     1501 ctgttggacc ttcacaacct ctacgccaac tcgttgaact ttcactttga cccggtggag
     1561 ttcatatcaa aggttccgac ggaagggatt aaaactattc atctcgcggg cggaaagtgg
     1621 atcggccgca acggcgcgca acgtctgctc gacgatcacc tgcacgacgt tcccgatccg
     1681 gtttacgatc tcctcgaaga agtcgccgcg cgtgcgccgc aatcgctaac actgattctc
     1741 gaacgcgacg gtaactttcc gtcgattgaa tcgctgctgg cacagctcga tcgcgcacgg
     1801 caggccctaa cccgcggccg cgcacgcgca cggggggctg ctgcatgacc gactcacggc
     1861 tcgaagtttt tctcgcgcgg agttacgtcg acc
//
LOCUS       DASWTX010001357         2504 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_84351, whole genome shotgun sequence.
ACCESSION   DASWTX010001357 DASWTX010000000
VERSION     DASWTX010001357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2504
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84351"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..318
                     /locus_tag="VGD38_20610"
     CDS             <1..318
                     /locus_tag="VGD38_20610"
                     /inference="COORDINATES: protein motif:HMM:NF017200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium chelatase domain-containing protein"
                     /protein_id="HEY0730499.1"
                     /translation="GDDVFVNIAGGLEVDEPAADLGVVTAIASSFKNTQIDPHTAVFG
                     EVGLTGEVRGAMQASVRAREAQALGFKKIVMPASNVAGLERLLGVRVVGVKSVDEALE
                     ELF"
     gene            complement(315..788)
                     /locus_tag="VGD38_20615"
     CDS             complement(315..788)
                     /locus_tag="VGD38_20615"
                     /EC_number="1.5.1.3"
                     /inference="COORDINATES: protein motif:HMM:NF012413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004146 - dihydrofolate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0005542 - folic acid binding [Evidence
                     IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HEY0730500.1"
                     /translation="MIKGIAAVDRQGAIGKDGKLPWHYSADMKFFRETTTGHAVVMGR
                     KTWLTLGKPLKNRLNIVLSRDPSIEPQESLLVLSDVDSVLSLNESLTTDLFVIGGAQI
                     YEAFLPRIEEWIITEVPMKVDKADAFMPEGYLTNFKETNSQSLDEGLTVKYYERT"
     gene            complement(792..1640)
                     /gene="thyA"
                     /locus_tag="VGD38_20620"
     CDS             complement(792..1640)
                     /gene="thyA"
                     /locus_tag="VGD38_20620"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016447510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004799 - thymidylate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009265 - 2'-deoxyribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HEY0730501.1"
                     /translation="MKQDHDLLRSILENGAEHSDRTGVGTISHFGFQTRFDLREGFPI
                     VTTKRVPFRWVAEELFWFLSGDTSETNLRAKGVDIWAEWADDEHTQKFGRPAGDLGPV
                     YGYLWRSFGGDYPARDGVDQIAKLVDSIRINPDSRRLIVTGWDPRQADNVDLPPCHTL
                     FQFKVENGRVLHCQLYQRSADAFLGVPFNISSYALLTHLIAHVTELEVGDFVYTLGDY
                     HIYKNHLEQVNQLLSREPLPLPQLQINDPDNSLRGLEGLLAMRYEHLNLIGYKSHSKI
                     AAPVAV"
     gene            1657..>2504
                     /locus_tag="VGD38_20625"
     CDS             1657..>2504
                     /locus_tag="VGD38_20625"
                     /inference="COORDINATES: protein motif:HMM:NF015412.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730502.1"
                     /translation="MKRYRLCFLGFGNVGRALARLLVAKSGDLRENYGIEWEITGVAT
                     RRMGWRASESAIDVAALLGGNDETPAQNSINEWLAQAKPDVVFETTSLNPETGQPAID
                     YLRASLQAGAHTITANKAPIVYAYDELNEIAVAQRKRFLFESTVMDSAPVFSLFRETL
                     PAVKIRGFSGVFNSTTNIILETMEAGRSFAEGVKTAQELGVAETDPSHDVDGWDSVMK
                     VCAISRVILKTPLMPNAVRREGIRSLNTAVLQAARAEGRPYKLLTRANVNADGSVAAT
                     VRPEQIA"
BASE COUNT          592 a          705 c          682 g          525 t
ORIGIN      
        1 ggcgacgacg tgttcgtaaa catcgccggc gggcttgaag tcgacgaacc cgcggcggat
       61 ttaggcgtcg tgaccgcgat cgcgtcgagt ttcaagaaca cgcagatcga tccgcacacg
      121 gcggtgtttg gtgaagtagg attgacgggt gaagtacgcg gcgcgatgca ggcctcagtt
      181 cgcgcacgcg aagcccaggc gcttggcttc aaaaagatcg tgatgcccgc gtcgaacgtc
      241 gcgggtttgg aacgtttgct tggtgtgcgt gtggttggtg tgaagtctgt tgatgaagct
      301 ttggaagagt tgttctaggt acgttcgtag tactttactg ttaagccttc gtcaagagac
      361 tgtgagttag tttctttgaa gtttgtcagg taaccctctg gcataaaagc gtccgcctta
      421 tccaccttca tcggcacctc ggtaataatc cactcttcaa tccgtggcag aaacgcctca
      481 taaatctgcg cgccaccgat cacgaacaag tccgtcgtca acgactcatt caacgacaac
      541 accgaatcca catcactcaa caccaacaac gattcctgcg gctcaatact cggatcgcgg
      601 ctcaacacga tattgagccg gttcttgagc ggcttgccga gtgtgagcca cgtcttgcgc
      661 cccatcacaa cggcatgccc cgtagtcgtc tcgcgaaaaa acttcatatc cgccgagtaa
      721 tgccacggaa gctttccatc cttcccaatc gccccctgac gatcgactgc tgcgatacct
      781 ttgatcatga ttcacacggc gacgggagcc gcaatcttgc tgtgggattt atatccaatc
      841 agattcaagt gctcgtaacg catggccaat aaaccttcaa gcccgcgcaa gctattatcc
      901 ggatcattga tttgcaactg cggtaacggt aacggttcac gcgagagaag ctggttcacc
      961 tgctcgagat ggtttttgta aatgtggtag tcgccgagtg tgtaaacaaa gtcgccgacc
     1021 tcgagttcgg taacgtgcgc gatgagatgc gtcaacaacg cgtacgaact aatattaaaa
     1081 ggcacgccga gaaacgcatc agccgaacgt tgatagagct ggcagtgcag cacacggccg
     1141 ttctcgacct tgaactgaaa cagcgtgtga cacggcggca aatcgacgtt atctgcctgg
     1201 cgcggatccc aacccgtgac gatcagtctg cgtgagtcag gattgatccg gattgaatca
     1261 accagctttg cgatctggtc cacgccgtct ctggcaggat aatctccacc aaacgagcgc
     1321 caaagataac catagaccgg accgagatct cccgccggcc ttccaaactt ctgcgtgtgt
     1381 tcgtcgtcag cccactcggc ccagatgtcc acacccttcg cacgcagatt cgtctcgctc
     1441 gtatcacccg acaaaaacca gaacaactct tccgccaccc aacgaaacgg cacacgcttc
     1501 gtcgtaacga tcggaaaccc ttcgcgaaga tcgaacctgg tctgaaaccc aaaatgcgag
     1561 atcgtgccga caccggtgcg gtcgctgtgc tcggcgccat tctccagtat cgatctcaac
     1621 agatcgtggt cttgtttcat gcgggactaa tcatacatga aacgatatcg actgtgcttc
     1681 ctcggatttg gaaacgttgg gcgcgcgctg gcgcgattgc tcgtcgcgaa gtcgggtgac
     1741 ttgcgtgaga actacggtat cgagtgggag atcacgggtg ttgcgacgcg acgcatggga
     1801 tggcgcgcga gtgaaagcgc gatcgatgtg gcagcgctgc tcggagggaa tgatgagacg
     1861 ccggcgcaga acagcatcaa tgaatggttg gcgcaagcga agcccgatgt cgttttcgaa
     1921 acgacgtcac tcaatcccga aacaggtcaa cccgcgatcg attatctgcg cgcttcgctg
     1981 caagcgggcg cacacaccat cacggcgaac aaagccccga tcgtttatgc gtatgacgaa
     2041 ctgaacgaga tcgccgtcgc acaacgcaag cgattcctgt ttgaatcgac ggtcatggac
     2101 agcgctcctg tcttttcgtt gttccgcgaa acgctgccag ccgtgaagat ccgtggtttt
     2161 agtggcgtat ttaattccac gacaaacatc atcctcgaaa cgatggaagc cggtcgaagc
     2221 tttgccgaag gcgtgaagac cgcgcaggaa ctcggcgtcg ccgagaccga tccgagtcac
     2281 gacgtcgacg gttgggattc ggtgatgaag gtctgcgcga tctcgcgcgt catactgaaa
     2341 acgccgctga tgccaaacgc cgtgcggcgc gaaggaatac gaagtctgaa cacggcggtc
     2401 ctgcaagcgg ctcgcgcaga aggacgtccg tacaaattac tgacacgcgc gaacgtcaac
     2461 gcagacggct cagtcgccgc aacagttcga cccgaacaga tcgc
//
LOCUS       DASWTX010001358         2866 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_429624, whole genome shotgun sequence.
ACCESSION   DASWTX010001358 DASWTX010000000
VERSION     DASWTX010001358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2866)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2866)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2866
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_429624"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..296
                     /locus_tag="VGD38_20630"
     CDS             <1..296
                     /locus_tag="VGD38_20630"
                     /inference="COORDINATES: protein motif:HMM:NF039905.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730503.1"
                     /translation="LYAGGGMMFSNIARIDDGMLDVVTASGLNRKQVVTELSRIHTGG
                     HLNNPKVSLTQSARARIETLLLQDAMLLEADGNVKGVTPVEFQVMPGALRFLI"
     gene            complement(293..736)
                     /gene="rpiB"
                     /locus_tag="VGD38_20635"
     CDS             complement(293..736)
                     /gene="rpiB"
                     /locus_tag="VGD38_20635"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF004051.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEY0730504.1"
                     /translation="MRIAVGADHAGVPLNERVIEELRLAGHEITDFGTHDANVPDDYP
                     DYAKQVGEAVQSGAAEIGILICGSGVGAAVAANKLRGIRAALCGDTYSAHQSREHDDC
                     NVLCLAARVTGPELALEIVRSFVAARFTGEERHRRRLAKVAAMEC"
     gene            complement(749..2788)
                     /gene="tkt"
                     /locus_tag="VGD38_20640"
     CDS             complement(749..2788)
                     /gene="tkt"
                     /locus_tag="VGD38_20640"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004802 - transketolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEY0730505.1"
                     /translation="MSAPLPKENSNTNPELDQLCINTIRALTLDAVQKAKSGHPGLPL
                     GAAPMAYVLWTRFLRHNPKNPKWDNRDRFLLSAGHGSMLIYSLLHLTGYDLPLDELKN
                     FRQWGSKTPGHPEYGLTPGVEITTGPLGQGFANGVGMAMGAAHLGARFNKEGFPLIDH
                     YVYAIVSDGDLMEGVAAEAASLAGHLKLGKLIYLYDDNNVTIEGFTNLAFSERVTERF
                     DAYGWHTITVPDGNNLDEIEAAIRAAQADERPSLIAIKTVIGYGMPTQGTRKAHSDPP
                     GEEAVREAKRHLGWPQDKDFYIPEEALAHYREAVDRGAQLESEWTALVERYEETQPEE
                     LKLWRTMMSPELPAGWEDHLPKFENATDVAPRVASGEVINALAPVLPMLIGGSADLGV
                     SNNTDIKDGRSFEAGSYDGRILHFGVREHARGSALTGMSLNGGLIPYGGTFLTFSDYM
                     RPAIRLAALSEVQVIYVFTHDSVGLGEDGPTHQSVEHLAALRTIPHLFVIRPADPAEV
                     SEAWRIAIMRRQAPTALALTRQKVPTLNRQRFAPAEGLRRGGYVLAEAETADGEVTAP
                     KLILIATGSEVSLALEARETLQMEGTPTRVVSLPCWELFEEQPKEYRDEVLPPSVTAR
                     LSIEAGVCQGWDRYVGMSGAMICLNRFGGSAPGEVALRELGFNVENVLKHARELL"
BASE COUNT          565 a          903 c          796 g          602 t
ORIGIN      
        1 gtctttacgc cgggggcggg atgatgttct cgaacatcgc gcgtatcgac gacggcatgc
       61 tcgacgtcgt caccgcgtcg ggtttgaatc gcaagcaggt cgtgacggag ctttcccgca
      121 tccacaccgg cggtcatctc aacaatccga aggtctcgtt aacacagagc gcgcgtgcac
      181 ggatcgagac gttgctgctt caggacgcga tgctgttgga ggcagatggg aacgtcaaag
      241 gcgtgacgcc ggtcgagttt caggtgatgc ccggcgcgct acggtttttg atctaacatt
      301 ccatcgctgc gaccttcgcc agacgcctgc gatggcgttc ttcacccgta aatctcgccg
      361 cgacgaaaga ccgcacgatc tccagcgcaa gctctggccc cgtcacgcgt gccgccagac
      421 agagcacgtt gcaatcgtcg tgttcgcgtg actggtgcgc tgaataggta tcgccgcaga
      481 gcgccgcgcg aatgccgcgc agtttgttcg ccgcgaccgc cgcgccgaca ccgctgccgc
      541 aaatcagaat cccgatctca gccgcgccgc tttgtacggc ttcaccaacc tgttttgcgt
      601 aatccggata atcgtcagga acgttcgcgt cgtgagtccc aaaatccgtg atctcgtgtc
      661 cggcgagccg caactcttca atcacccgct cgttgagcgg aacccccgca tgatctgcgc
      721 caactgctat tcgcataact ctaaaccgtc acaacaactc gcgcgcgtgc ttcaacacgt
      781 tctcgacatt gaatcccaac tcgcgcaacg caacttcgcc cggcgcagat ccgccgaacc
      841 gattcaaaca gatcatcgcg ccgctcatcc ccacgtaccg atcccatccc tggcaaacgc
      901 ccgcttcaat cgagagccgc gcggtcacag acggcggcaa aacctcgtcg cgatattcct
      961 tcggctgctc ttcgaaaagt tcccaacacg gcagcgacac gacgcgcgtc ggcgtgcctt
     1021 ccatttgcaa cgtctcacgc gcttcgagcg cgagtgagac ttccgaaccc gtcgcgatca
     1081 agatcagttt cggcgcggtc acttcgccgt cggcagtttc ggcttccgca agcacgtaac
     1141 cgccgcgccg caaaccttcc gccggcgcga accgctgacg attgagcgtc ggcacctttt
     1201 gacgcgtcaa cgccaacgcc gtcggcgctt gccggcgcat gatcgcaatg cgccacgctt
     1261 cgctcacttc cgcggggtcc gccggacgta tcacaaacaa atgcgggatc gtccgcagcg
     1321 ccgcaagatg ttcgactgac tgatgcgttg gaccatcctc accaagcccg actgagtcgt
     1381 gcgtgaagac gtaaatcacc tgcacttccg acaacgccgc gagacgaatc gccgggcgca
     1441 tgtaatccga gaacgtcaaa aacgttccgc catacggaat caaaccgccg ttcaacgaca
     1501 ttcccgtcaa cgccgagccc ctcgcgtgtt cgcgcacgcc gaaatgcagg atacggccgt
     1561 cgtaagatcc ggcctcaaaa ctgcggccgt ccttgatgtc ggtgttgttt gaaacgccga
     1621 gatccgccga gccgccaatc aacatcggca gcaccggcgc gagcgcattg atgacttcac
     1681 cgctcgcgac gcgcggcgcg acgtctgttg cgttttcaaa cttcggcaag tgatcttccc
     1741 aacccgcggg cagttcgggg ctcatcatcg tgcgccaaag tttcaattct tccggctgcg
     1801 tctcttcgta acgttcaacc agcgcggtcc attcggattc caactgcgcg ccgcgatcga
     1861 cagcttcgcg gtagtgcgcg agcgcttctt cgggaatgta aaaatccttg tcttgaggcc
     1921 agccgagatg gcgcttcgct tcacgcaccg cttcttcgcc cggcggatcg ctatgcgctt
     1981 tgcgcgtgcc ctgcgttggc atgccgtagc cgatcacggt tttaatcgcg atgaggctcg
     2041 gacgttcatc agcttgcgcc gcacggattg ccgcttcgat ttcgtcgaga ttgttgccgt
     2101 ccggaacggt aatcgtgtgc caaccgtagg cgtcgaaacg ttctgttact cgttcgctga
     2161 aagcgagatt ggtgaaaccc tcgattgtga cgttgttgtc gtcgtagagg taaataagtt
     2221 ttccgagctt caaatgcccc gcgagcgatg cggcctcggc cgcgacgcct tccatcagat
     2281 cgccgtcact tacaatcgcg tagacgtaat gatcgattaa cgggaaacct tctttgttga
     2341 agcgcgcgcc gagatgagcg gcgcccattg ccatgccgac gccgtttgcg aaaccctggc
     2401 ccaatgggcc agtcgtgatt tcaacgccgg gcgtcaaacc gtattccgga tgaccgggag
     2461 tcttcgagcc ccactgccgg aagtttttca actcgtcgag cggcagatcg tagccggtga
     2521 gatgcagcaa cgagtagatc agcatcgagc cgtgaccggc ggaaagtaag aaccgatcgc
     2581 ggttgtccca cttcgggttc ttcgggttgt gacgcaggaa acgcgtccac aaaacgtaag
     2641 ccatcggcgc ggcgccgagc ggcaatcccg ggtgacctga tttggctttt tgcacggcgt
     2701 cgagtgtcaa cgcgcgaatg gtgttgatgc agagttgatc gagttcaggg ttggtgttgg
     2761 agttttcttt cggcaaaggt gcgctcattt acagtgtcct ggtgttaagt ttttgatcaa
     2821 tcaaccgctc gtacaactcc tgctgccgtt cgagaccttc gcggta
//
LOCUS       DASWTX010001359         1990 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_212313, whole genome shotgun sequence.
ACCESSION   DASWTX010001359 DASWTX010000000
VERSION     DASWTX010001359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1990)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1990)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1990
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212313"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            68..>1990
                     /locus_tag="VGD38_20645"
     CDS             68..>1990
                     /locus_tag="VGD38_20645"
                     /inference="COORDINATES: protein motif:HMM:NF014214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005615 - extracellular space [Evidence
                     IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M36 family metallopeptidase"
                     /protein_id="HEY0730506.1"
                     /translation="MVLWQDSPAYYVIVDAEEGGDLLWRKNITNDQTQTATYSVYNDD
                     SPAPLSPSNALPGSGIQGPAISRTLFTLISEGAAFNNLGWIPDGVNTTTGNNVDAGLD
                     IVAPNGIDPAGRPVGAPFRVFDFPYNPPPGIPPPGDAPTLANYRNGIVTDLFFWSNRY
                     HDILYQLGFTEAARNFQLNNFGRGGLGNDFVRAEAQDSSGTNNANFATPADGLLPRMQ
                     MFIFTGPNPDRDGDLDHDIVIHELTHGTSNRLHANASGLASTTSVGMGEGWSDFYGRA
                     ILSTADEDLNGIYPAGPYATWQLGPIGTNSYYYGIRRFPYALKTTLGANGKPHNPLTF
                     ADTDPAQLNTTDGAFPESPINFSGNGATEVHNLGEIWALALFEMRARIINNLGFATGN
                     QRTLQIVTDGMKLDPVNPNMLQGRDAILAADCAGFAGADELQIWEGFAARGMGFGARV
                     NAGSSVTEAFDTPHLSVGNVIVSNDSCDNTGTADPGETVTLTIPLTNPFCATSIDGTT
                     VSVGGGSAVSYGDIPAGATVTRDIPFTVPADTCGTQLPVEVTINSSLGPVTRTFFLQI
                     GTPTGILPPVTHSSGNLAVPIADNSTVDIPITVTDSGAVGDVNVHVRLNHTFTGDLQL
                     RLIAPDGTIVNLSNNRG"
BASE COUNT          446 a          610 c          519 g          415 t
ORIGIN      
        1 cgacaacatt acggttgaac tccagtattt tccgctggaa ccaggggtaa taaccgaagc
       61 gtggtcaatg gttctttggc aggacagccc ggcttattac gtgatcgtgg acgcggagga
      121 aggtggcgat cttttgtggc ggaagaacat cacaaacgat cagacacaaa cagccaccta
      181 ctcggtttac aacgacgaca gtccggcgcc gctttcgcca agtaatgcac tgccgggatc
      241 gggcattcaa ggcccggcaa tctcgcgcac gcttttcaca ttaatcagcg agggcgctgc
      301 ttttaataac ctcggttgga taccggacgg cgtcaacacc accacaggca acaacgtgga
      361 tgccggtctc gatatcgtgg ccccaaacgg aatcgatccg gccggacgtc ctgtcggcgc
      421 tccgttccgc gttttcgact tcccgtacaa cccgccgccg ggaattcctc caccgggtga
      481 tgcgcctaca ctcgcgaatt atcgcaacgg catcgtgacc gatctgttct tctggtccaa
      541 ccgttaccac gacattcttt accaactggg cttcactgaa gctgctcgta atttccagtt
      601 gaacaacttc ggccgcggcg gactcggcaa tgacttcgtt cgcgctgaag cgcaggattc
      661 gtcgggcaca aacaacgcga acttcgcaac gcccgcggat ggcttactgc cgcgcatgca
      721 gatgttcatc ttcacgggcc cgaacccgga ccgcgacggc gatctggatc acgacatcgt
      781 cattcacgag ctgacacacg gaacttcgaa ccggctgcat gccaatgcct ccggcctcgc
      841 cagcaccact tccgtcggca tgggcgaagg ctggtcggac ttctacggac gtgcgatcct
      901 ctcgaccgcc gacgaagacc tcaatggtat ttatccggct ggtccttacg ccacatggca
      961 gctcggtccg atcggaacga acagctacta ctacggcatt cgccgttttc cttatgctct
     1021 gaaaacaaca ctcggcgcca acggcaagcc gcacaacccg ctaacttttg cggataccga
     1081 tccggcgcaa ctcaacacta ccgatggcgc atttccggag agtccgatca acttctccgg
     1141 caacggagca actgaggtcc acaacctcgg cgagatttgg gccctcgcat tattcgaaat
     1201 gcgcgcacgc atcatcaaca acctgggctt tgccaccggt aaccagcgca ctttgcagat
     1261 cgtcaccgac ggcatgaagc tggacccagt caatcccaac atgttgcagg gacgcgacgc
     1321 cattctcgcc gcggattgcg ccgggtttgc aggcgctgac gaactacaga tttgggaagg
     1381 atttgccgct cgtggcatgg gcttcggtgc ccgtgtcaac gcaggttcgt ctgttaccga
     1441 agcgttcgac actccgcacc tgagcgtcgg caacgtaata gtttcaaatg attcctgcga
     1501 caacacggga accgcagatc caggtgaaac agtcacgttg accataccct taaccaatcc
     1561 tttctgcgcg acttccatcg atggaactac ggtaagcgtt ggtggtggaa gcgcggtaag
     1621 ttacggcgat attccggctg gcgctacagt tacgagagac attcctttta ctgtgccggc
     1681 cgacacttgc ggaacccagt tgcctgttga agtcacaatc aatagcagtc tggggcccgt
     1741 gactcggacg ttcttcctgc agattggaac cccaaccgga atactgccac cggtaactca
     1801 cagcagtgga aacctggcgg taccgattgc cgacaattcg acggtcgata ttccgatcac
     1861 ggtcactgac agcggtgcag tcggagacgt taacgtacac gttcgcctga accacacgtt
     1921 caccggcgac ttgcaacttc gcttgatcgc accggatggg accatcgtta atctctccaa
     1981 caatcgtgga
//
LOCUS       DASWTX010001360         8835 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_280916, whole genome shotgun sequence.
ACCESSION   DASWTX010001360 DASWTX010000000
VERSION     DASWTX010001360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8835
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280916"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..934)
                     /locus_tag="VGD38_20650"
     CDS             complement(<1..934)
                     /locus_tag="VGD38_20650"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0730507.1"
                     /translation="MLPNAQVTNSTVDAVYRTDWGRIVATLIRQFGDFELAEDAAQEA
                     FTAAVDQWRTDGVPESPSAWIIQTAKHKAIDRLRRQTRLKEKLETHPELFPSEIVDEP
                     NFNWGEIPDDRLRLIFTCCHPALALEAQVALTLRTLGGLQTDEIARAFLVPTATMAQR
                     LVRAKRKIRDAGIPFTVPDTSDMPERLDAVLTAIYLIFTEGYAATRGQPLIRADLCAE
                     AIRLGRLVTKLLEPNPPGEATALVALMLLHDSRREARLDEAGDLVVLEEQDRSRWNMA
                     QVAEALTLIDEALSNSPGPYALEAAIAAEHCKAAR"
     gene            1025..1372
                     /locus_tag="VGD38_20655"
     CDS             1025..1372
                     /locus_tag="VGD38_20655"
                     /inference="COORDINATES: protein motif:HMM:NF015735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HEY0730508.1"
                     /translation="MLLVYLAEDSLSEEEREHCYIESAALSRDLNTQGKYISAGPLHP
                     TTTATSLRLRDGKRLVTDGPFAETREQLGGYYLIDAHDLDEAMKIAERIPVAKYGTIE
                     IRPVLEISGLPEN"
     gene            1384..1785
                     /locus_tag="VGD38_20660"
     CDS             1384..1785
                     /locus_tag="VGD38_20660"
                     /inference="COORDINATES: protein motif:HMM:NF024953.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HEY0730509.1"
                     /translation="MQAEPIGVSKGALWAARIITGLVALFLLMDGAMKLVKPAFVVEE
                     TMRLGYPERVIVPIGIVLIVCTILYLVPKTAVLGAILLTGYLGGAVATHVRAGEPVFS
                     VVFAIVFGVLVWLGLYLRNPTLRLLIPFSSI"
     gene            1798..2175
                     /locus_tag="VGD38_20665"
     CDS             1798..2175
                     /locus_tag="VGD38_20665"
                     /inference="COORDINATES: protein motif:HMM:NF024953.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HEY0730510.1"
                     /translation="MNIVLWIIQVLLALLFLFAGVMKLVTPADQWQAQAQTLPEVMRF
                     SHAFMVFIGVVEALGGLGLVLPGIVRKWKGLTALAALGLVIVMIGAVVVSVMAFGISA
                     GIIPLVVLLLCAFVAYGRGVKHW"
     gene            2201..2602
                     /locus_tag="VGD38_20670"
     CDS             2201..2602
                     /locus_tag="VGD38_20670"
                     /inference="COORDINATES: protein motif:HMM:NF018663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY0730511.1"
                     /translation="MELSPYLMFNGTCEEALKFYEENLGAKIESVIKHAGTPAEEHVP
                     AEWRDKVMHARFTIDGHVVMASDAPPGHQKESGGFSLSLALNDVAKGEEIFNTLSDGG
                     SVTMPFGPTFWAKGFGMCVDRFGIPWMVNCE"
     gene            2614..2976
                     /locus_tag="VGD38_20675"
     CDS             2614..2976
                     /locus_tag="VGD38_20675"
                     /inference="COORDINATES: protein motif:HMM:NF018893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1428 domain-containing protein"
                     /protein_id="HEY0730512.1"
                     /translation="MSYVDGFVVPVPESNLKQYRSIAQKAGKIWKEHGALHYVEAVGD
                     DLDVKFGLSFKKAFKPKPGETILYSFIVFKSRADRDRVNAKVMSDPRMNKMMASGQEM
                     PFDVKRMCYGGFKSIIDM"
     gene            2989..3447
                     /locus_tag="VGD38_20680"
     CDS             2989..3447
                     /locus_tag="VGD38_20680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730513.1"
                     /translation="MNVRQINWPLWIGVLLTLIGGFSYIAVFVWFPITRDFPWVNLLI
                     FLVAAVFLWKGVRRGFARDRVHPTRSKILTSIFTTISVLMIALFLFSYFVFARWLPPS
                     TGAPQVGQKVPEFTLPDSTGKQVSLNELLTTPIEGKPPKGVLLIFYRGYW"
     gene            3451..3792
                     /locus_tag="VGD38_20685"
     CDS             3451..3792
                     /locus_tag="VGD38_20685"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HEY0730514.1"
                     /translation="MCNSELRGIEKSLPSFNQAGIRPVAISVDSPEVSRNLMQQSGYT
                     FPFLADEKAEVIRRYDLLHAGAGENGADIARPAELLVDRTGTVRWINLTENYFVRARP
                     EDVLDKVNLLE"
     gene            complement(3871..4344)
                     /locus_tag="VGD38_20690"
     CDS             complement(3871..4344)
                     /locus_tag="VGD38_20690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730515.1"
                     /translation="MKGKYLRRIGGLILTALLLTGIAFVSPSDVQAQGRRRVVIVRPH
                     PYRYYRPWGFRSWGYPYGWGYSPWGPYGNYYSRYVFDNAEEAVNRAYKDGFKTGKDDG
                     KKAKSYSFERSHYFKEAGFGNFAEEYRTGFARGYQEGYRVGQDERAQKELKKRAG"
     gene            complement(4800..6089)
                     /locus_tag="VGD38_20695"
     CDS             complement(4800..6089)
                     /locus_tag="VGD38_20695"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEY0730516.1"
                     /translation="MSTRRNPDPIRQLPVRPNLDQLKHQAKDLLRRVRSGDAEALAEL
                     NTFHPDNPQQPKLADAQLALARSYGASSWPRVVQCCKLIDAIWRDDLDAVRALVTKHP
                     NLIHENAGIRNNNWGPPLTYAANLGHNQIIRMLYDLGARDLQTAIDRALLQGKIDTAR
                     MLYEMMGSPPLPDGALAGPAYTLTATTTELALELGAKVIDENGNSIAPVDVVLETDSR
                     KPTAKHRILELYVQHGVTLPDTPVMALHRGRIDLLEEHLRRDPQLLIRTFTHEEIYPP
                     ELGCHDEVLATQGTPLKGTTLLHLCVEYDEIEIARWLLQRGADPNTRAAVDADGFGGH
                     TALFCAVLSQPNYWMNRGHHPPNAEFTQLLLDHGADPTIRASLRKKLHPGYAGRYDVE
                     NTYEYRNVTALEWGRQFHAKEFVSEPAMRLLEEKMRE"
     gene            complement(6252..6515)
                     /locus_tag="VGD38_20700"
     CDS             complement(6252..6515)
                     /locus_tag="VGD38_20700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730517.1"
                     /translation="MAELLQEYTTEVIAANGTAYTVRSYGEERADGTWTGWLEFEPVD
                     STMPALRTDQETSQPDRTAVEYWATGLEPVYFEGAFERAQDRS"
     gene            6747..7280
                     /locus_tag="VGD38_20705"
     CDS             6747..7280
                     /locus_tag="VGD38_20705"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEY0730518.1"
                     /translation="MHKKSVLLLVAMAVGLLCTTSALGQDYRRFELFAGYSHNRVDVG
                     PVEDFDPDDDIEVSDIFDEREGFNGVNISVGGNFHRYWGAKFDYSYHQKSFGFGADNT
                     TIRLHNFLGGIQIKDNAPEGTFKPFAHALVGVGRTAADLSEFDDRLVDFDDAGFAAAI
                     GAGLDIRHSRHACFPRQ"
     gene            7352..8164
                     /locus_tag="VGD38_20710"
     CDS             7352..8164
                     /locus_tag="VGD38_20710"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY0730519.1"
                     /translation="MSETDDAKQKAAATYNAAADFFDHPANTFWDRYGRRTIDKLGLK
                     RGARVLDVCCGSGASAIPAAHAVGPEGSVVGVDLAENLLKLARGKSRQLGLTNVEFQT
                     GDMTALEFPDESFDAVVCVFGIFFVPDMEGALRELKRVLHREGRLAITTWGPRLFEPI
                     NSVFWDSVRSVRPDLYKGFNPWDRICEPDALRSLLSRDFRNVQVSPETDSQPIDSPED
                     WWAMILGSGYRGTVDQLSSAERELVKNQNFEFISRENIRAIEASVLYAQASA"
     gene            8245..8769
                     /locus_tag="VGD38_20715"
     CDS             8245..8769
                     /locus_tag="VGD38_20715"
                     /inference="COORDINATES: protein motif:HMM:NF018663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY0730520.1"
                     /translation="MAAVNPVPGGDARTEPRKQKITTFLWFDNNAEEAANFYVSVFKN
                     SRILKTARYPEGSPGPQGAVMTVDFELDGQEFIALNGGPHFKFTEAISLVVHCKTQEE
                     VDYYWEKLTADGGQESQCGWLKDKYGLSWQITPDVLLNTWSEADPAKAQRVMQAMMGM
                     KKIIIKDIEAAAAG"
BASE COUNT         1775 a         2363 c         2655 g         2042 t
ORIGIN      
        1 cgcgagcagc cttgcagtgc tccgcggcga tcgccgcttc cagcgcatat ggaccaggtg
       61 agttgctgag tgcttcatca atcagcgtca gtgcctccgc aacttgcgcc atgttccagc
      121 ggcttcgatc ctgttcttcg aggacgacga gatcgcctgc ttcatcgagt cgagcttcgc
      181 gtcgtgaatc gtgcagcaac atcaacgcaa ccagcgcagt ggcttccccg ggcggatttg
      241 gttcgagcag ttttgtgacg agccgtccga gacggatcgc ttctgcgcat aagtccgcgc
      301 ggatgagcgg ctggccgcgc gtggcagcgt agccttcagt gaagatgaga tagatggcgg
      361 tcaagactgc gtcgagacgc tccggcatgt cgctcgtgtc gggtacggtg aagggaattc
      421 cggcgtcgcg aatctttcgc ttcgcgcgca cgagccgctg ggccatcgtc gcagtcggga
      481 cgagaaacgc gcgcgcgatt tcgtcggttt gcagtccgcc gagcgtgcgc aacgtcaatg
      541 cgacttgcgc ttcgagcgcg agcgccggat ggcaacaggt gaagatcaga cgcagacgat
      601 cgtcgggaat ttcgccccag ttgaagttgg gctcgtcgac gatctcactc ggaaagagtt
      661 ccggatgcgt ctccagtttt tctttcagac gagtttgccg ccgcaggcga tcaatcgctt
      721 tgtgtttggc ggtttgaatg atccaggcgc tgggtgattc gggaacgccg tcagtgcgcc
      781 actggtcaac ggcggcggtg aacgcctcct gcgcggcatc ttcggcgagc tcgaagtcgc
      841 cgaattgccg gatcagcgtg gccacgatgc ggccccagtc agtccggtag accgcatcga
      901 ccgtgctatt agtgacctgg gcgttgggaa gcacgtttga taataaaaaa attacggcga
      961 gggtgtcgat tcgcgggcgg ctcgttcgac ttaggggtgg aggtgaacaa ttcaggtgaa
     1021 atacatgttg ctggtttatc ttgctgaaga ttcgttgagt gaagaagaac gcgagcactg
     1081 ctatatcgag tcggctgcac tctcgcgcga tctaaacacg cagggaaagt acatttccgc
     1141 cgggccgttg catccgacga caaccgccac cagcttgcgc ctgcgtgacg gaaagcggct
     1201 tgtaacggat ggtcctttcg cggagactcg cgaacaactc ggcggctact acctgatcga
     1261 cgcgcacgat ctcgacgaag cgatgaagat cgccgaacgc atacccgtcg cgaaatacgg
     1321 cacgatcgaa atcagaccgg tgctggaaat ctcaggcttg ccggagaatt gaggacactg
     1381 acaatgcaag cagagccaat aggtgtttcg aaaggcgctc tctgggccgc gagaataatc
     1441 accggactcg tcgcgttgtt tctgctgatg gacggcgcga tgaaactcgt gaagccggcg
     1501 ttcgtcgtcg aagagacgat gcggctaggt tatcccgaac gagtgatcgt gccgatcggc
     1561 atcgtcctga tcgtctgcac gattctttac ctggttccga aaacggcggt gctcggcgcg
     1621 atactattaa cgggttatct cggtggcgct gtcgcgacgc acgttcgcgc gggcgagcct
     1681 gtgttttcag tcgtcttcgc gatcgtgttc ggtgttttgg tgtggctggg actttatcta
     1741 cgcaacccca cgctacgttt gttaattccg ttcagctcta tttagaagga aacgattatg
     1801 aatattgtgc tttggatcat tcaggtattg ttggcgctct tgtttctgtt tgccggcgtg
     1861 atgaagctgg tgacaccggc ggatcagtgg caggcgcagg cgcagacgct gccggaggtg
     1921 atgcgctttt cccacgcgtt catggtgttc atcggcgtgg ttgaagcgct cggcgggctc
     1981 gggttggtgc tgcccggcat agtgcgcaag tggaaaggat tgacggcgct cgcggcgctc
     2041 ggcttggtga tcgtaatgat cggcgcggtc gtcgtcagcg tcatggcgtt cggcatttca
     2101 gcgggaatca taccgttggt agttttgttg ctttgtgcgt tcgtggctta cgggcgcggt
     2161 gtgaaacact ggtaattatt ctgttcaagg gagagaaatc atggaattga gtccgtatct
     2221 tatgttcaat gggacgtgtg aagaggcgct gaagttttac gaagaaaatc tcggcgcgaa
     2281 gatcgaatcg gtaatcaagc acgccggcac tccggcggaa gaacacgttc cggcggaatg
     2341 gcgcgacaaa gtgatgcacg cgcggttcac gatcgacggc cacgttgtca tggcctccga
     2401 cgcaccgccg ggacatcaga aagagtcggg aggcttctcg ctctcactcg cgctcaacga
     2461 cgtcgcgaaa ggcgaagaga tctttaacac gttgtctgat ggcggttcgg tgacgatgcc
     2521 gtttggtccg accttctggg ccaagggatt cggcatgtgc gtcgatcgct ttggtattcc
     2581 ctggatggtt aactgcgaat aaggagaaaa ttgatgagct acgttgacgg atttgtcgta
     2641 ccggtgccgg aatcgaacct gaaacaatac cgcagcattg cacagaaagc gggaaagatc
     2701 tggaaagaac acggagcatt gcactacgtc gaagcagtcg gcgacgatct cgacgtgaag
     2761 tttgggcttt cgttcaagaa ggcgttcaag ccgaagcccg gtgagacgat tctgtattcg
     2821 tttatcgtct tcaagtcgcg cgcggatcgc gatcgtgtca acgcgaaggt gatgagcgat
     2881 ccgcgcatga ataaaatgat ggcgagcggc caggagatgc cgtttgacgt gaagcgcatg
     2941 tgctatggtg gtttcaagtc cataatcgac atgtaaagga agcggctaat gaacgttcga
     3001 caaatcaact ggcccttgtg gatcggtgtt ctgctgacgc tgattggagg cttcagctac
     3061 atcgcggttt ttgtctggtt cccgatcacg cgcgattttc cgtgggtcaa cctgctgatc
     3121 tttttagtag cggcagtttt tctctggaaa ggagtacggc gaggcttcgc acgcgatcgg
     3181 gttcacccga cgcgttcgaa gatcctgacg tcgatcttca ctacgatcag cgtgctgatg
     3241 atcgcgctgt ttctcttttc gtatttcgtt tttgcgcgct ggctgccgcc gtcaaccggt
     3301 gcgccgcagg tgggccagaa ggtgccggag tttacactgc ctgactcgac cggaaagcag
     3361 gtgtcactca acgagttgct aacgacgccg atcgaaggca aaccgccgaa aggtgttttg
     3421 ctgatcttct atcggggtta ctggtgaccg ttgtgcaact ccgagttgcg gggtatcgaa
     3481 aagagtttgc cgagtttcaa tcaagcgggt attcgaccgg tggcgatcag tgttgacagt
     3541 cctgaagttt cgcgcaacct gatgcagcaa tcgggctaca cgtttccgtt tctggcggac
     3601 gagaaagctg aagtgattcg ccgttacgac ctgttgcacg caggcgcggg tgaaaacggc
     3661 gcggacatcg cgcggccggc ggagttgttg gttgacagaa ccggcaccgt gcgctggatc
     3721 aatttgactg agaactactt cgtgcgcgcg cgtcccgaag acgtgctcga caaagtgaac
     3781 ctgttagagt agacacaaaa actgccacgg attttacgga cagtctgtgt tcgtccgtgt
     3841 catccgtggc agcttctgtt ttgaaccgaa ttagccggcc cgtttcttaa gctctttctg
     3901 agctcgttcg tcctgtccta cccggtaacc ttcctggtat ccgcgtgcga atccagtgcg
     3961 gtattcctcg gcgaagttgc caaagcccgc ttccttgaaa taatgggagc gctcaaagct
     4021 gtagctcttc gctttcttgc catcgtcctt gccggttttg aagccgtctt tgtacgcccg
     4081 gttcacagcc tcttcggcgt tatcgaaaac gtacctgctg tagtagttgc catacgggcc
     4141 ccagggacta tatccccagc catacgggta accccagctt ctaaaacccc acggtcgata
     4201 gtatcgatag ggatgtggac gaacaatcac gaccctgcgg cgaccctgcg cctgtacatc
     4261 gctcggggaa acgaaggcga tgccagtgag cagaagcgct gtgaggatca gaccgcctat
     4321 tcgtcgcaaa tatttgcctt tcatttaact tctgaaacct ccttgaaagc cgtacttagc
     4381 caacgcgtgt gcggctgatt aatctcgtat ccgttctgcc gttcggataa aaccgcacga
     4441 cataagtctc acggtagagt cgccggccgt agcgcacgag ccgtgatcgc gtcacagtgc
     4501 gcgaccgtct gtcgtagcgc cggtcgtagc gtctgtcata ccgtctgcca taacgatccc
     4561 tctgccattg aggtgcagaa ctggcgttaa ctgttgcatt tacatgcgag ttttctgctg
     4621 ttcttgcctc ggccggaact acaaaaccta atgtcagcaa cgcgaatgcg attccgagta
     4681 acttcttcat ctcactttcc ccttttgttt aaaaaactat ggtcgggcgc cccccgtctt
     4741 tctggagaga gcccgacctg ttaactaaga cacgcgagac ggcggtttgg ttacattatt
     4801 tactcccgca ttttctcctc gagcagccgc attgccggtt cgctcacgaa ctcttttgcg
     4861 tggaactgcc ggccccactc gagggcggtt acgttgcgat attcgtacgt gttttcgacg
     4921 tcgtatcgcc cggcgtaacc ggggtggagc ttctttctga gcgaggctcg aatcgtggga
     4981 tcggcgccgt ggtcgaggag caattgagtg aactctgcgt tgggcgggtg gtgcccgcgg
     5041 ttcatccagt aatttggctg cgagaggacg gcgcagaaca gcgcggtgtg cccgccgaag
     5101 ccgtcggcgt cgactgcggc gcgcgtgttc ggatccgcgc ctcgttgcag tagccagcgg
     5161 gcgatttcga tctcgtcgta ctcgacgcag agatgaagca gggtcgtgcc tttgagcggc
     5221 gtgccttgcg ttgccaggac ttcgtcgtga cagccgagtt cgggcgggta gatttcttcg
     5281 tgcgtgaacg tgcggatgag gagttgcgga tcgcggcgca ggtgttcttc gaggagatcg
     5341 atgcgtccgc gatgcagcgc catgacgggc gtgtcgggaa gtgtgacgcc gtgttgcacg
     5401 tagagttcga gaatccggtg tttggccgtg ggcttgcggc tgtctgtttc gagcacgacg
     5461 tcgacgggtg cgatggagtt gccgttttcg tcgatcactt ttgcgccgag ttcgagtgct
     5521 agttccgtgg tcgtggctgt cagcgtatac gctggtccgg cgagtgctcc gtcaggcaac
     5581 ggtggcgaac ccatcatctc gtaaagcatg cgagctgtgt cgatcttgcc ttgcagcaac
     5641 gcgcgatcga tggccgtctg aagatctctc gcaccgaggt cgtaaagcat tcggataatt
     5701 tggttgtggc cgagattggc ggcgtaagtt agcggtggtc cccagttgtt gttacgaatg
     5761 ccggcgttct cgtggatgag gtttggatgt ttggtgacga gagcacgcac ggcgtcgagg
     5821 tcgtcgcgcc agatcgcgtc gatcagtttg cagcactgga ccacgcgcgg ccagcttgac
     5881 gcgccgtagc tgcgtgcgag tgcgagttgt gcatcggcga gtttgggttg ttgagggttg
     5941 tcagggtgaa acgtgttgag ctctgcgagt gcttcggcgt cgccgctgcg aacacggcgc
     6001 aacaagtcct tcgcctggtg tttgagttgg tccaggttgg gacgaacggg aagttgacga
     6061 attggatccg gatttcttcg agtggacata cgagcctcct tcgctatgcc cgttgtccgc
     6121 tgtttcgggc gaaaggaggt tcgcgatgga acctgtagtc gaacgagatg ttcaggtgaa
     6181 ctcagttctg cccgcggacg ggaggcgccc tgttgcgccg cgggcagaat agctcctgga
     6241 gtgctcgatc atcaagagcg gtcctgggcg cgttcgaagg cgccctcgaa atagaccggc
     6301 tcgaggcccg ttgcccagta ttcgaccgcg gtccgatctg gttgagatgt ctcctggtcc
     6361 gtccttagcg cgggcatcgt gctgtcgacc ggctcgaatt ccagccaccc ggtccacgtg
     6421 ccgtccgctc gttcctcgcc ataactccgc accgtgtaag ccgttccgtt cgcggcgatc
     6481 acttccgtcg tgtattcctg taaaagctct gccatttcaa cactcctcac ccacttgtct
     6541 cggcgacatt cttgcacgaa caacgtcgag aacatctgct tgggacagtt tctgcaggaa
     6601 cttttgaaac aatcgcgtac gtcaacggac atacgatctc ggtctcacac cgtagattca
     6661 ttgcgccgga gcacaaaacc ggcggtcata ccgctgttat tccccgatct ccgagcttca
     6721 gcaaaattga ttcactggag gtcactatgc ataaaaaatc tgtccttcta cttgtcgcga
     6781 tggccgtggg cctgctctgc acgaccagtg ccttgggcca ggactaccgc cgctttgagc
     6841 tgttcgccgg ctattcacac aaccgcgtcg acgttggacc agtcgaggat ttcgatccgg
     6901 acgacgacat cgaagtaagc gacatcttcg acgagcgcga gggtttcaat ggcgtcaaca
     6961 tctcagtcgg tggaaatttc catcgctact ggggagccaa gtttgattac tcgtaccatc
     7021 aaaaatcttt tggcttcggc gcagacaaca ccacgatccg tttgcacaac ttcctcggcg
     7081 ggattcagat caaggacaac gctccggaag gaacattcaa acctttcgcg cacgcgcttg
     7141 tcggcgtggg ccgcaccgct gcggatcttt cagagtttga cgatcggctc gtcgactttg
     7201 acgacgccgg cttcgcggca gcaatcggcg ccgggctcga cattcggcat tcccggcacg
     7261 cctgttttcc gcggcagtga gaaacgcacg ttacacaact tccgcttcgg tgtgggcatc
     7321 gtgattcact gatgtcataa tgtcgctcaa catgagcgag acagacgatg cgaaacagaa
     7381 agcggccgcg acttacaacg cggccgctga tttttttgat cacccggcta acacgttttg
     7441 ggatcgttat ggccgtcgca cgatcgacaa gctcggatta aaacgaggcg cgcgagtgct
     7501 cgacgtgtgt tgcggcagtg gcgcgtctgc gattcccgcg gcgcatgctg ttggcccaga
     7561 aggttcggtc gtcggcgttg acctcgctga gaacctgttg aagctcgcgc gcggtaaatc
     7621 ccgacaactc ggtttgacaa acgtcgaatt tcaaaccggc gacatgacgg cgttggaatt
     7681 tcccgacgaa agcttcgacg cggttgtttg tgtattcgga atcttcttcg tgcccgacat
     7741 ggagggcgcg ctgcgggaac tcaaacgcgt gctgcatcgc gaagggcgat tggcgatcac
     7801 gacctgggga ccgcggctct tcgaacccat caacagcgtg ttctgggatt cagtccgcag
     7861 cgtcaggccc gacctctaca aaggcttcaa cccgtgggat cgcatttgtg aaccagacgc
     7921 gttgcgttcg ttactgagca gagattttag gaacgtacag gtgtcgcccg aaacagattc
     7981 tcagccgatc gattcgcccg aggattggtg ggcgatgatt ctcggcagcg gttaccgtgg
     8041 cacggtcgat caactctcct cggctgaacg ggaactcgta aaaaaccaga atttcgagtt
     8101 catcagccgc gaaaacatcc gcgcgatcga agccagcgtc ctctacgcgc aagcgtccgc
     8161 gtaaaacttt ccgcaaaaat tttcggcagg ctgtcgatcc gtcgccccat cattcgacta
     8221 acccatgaaa ggagcttatt agacatggca gcagttaacc ccgtgcccgg cggcgatgcc
     8281 cgtacagagc cgcgcaagca aaagatcacg acatttcttt ggttcgacaa caatgcggaa
     8341 gaggcagcaa atttctacgt ttcagtcttc aagaactccc gcattcttaa aaccgcacgt
     8401 tacccggaag gctcacccgg cccgcagggc gcagtgatga cggtggattt tgagctcgac
     8461 ggacaggagt tcatcgcgct taacggcggc ccgcacttca agttcaccga agcgatctcg
     8521 ctcgtcgtgc actgcaagac gcaggaagaa gtcgattact actgggagaa actgaccgcg
     8581 gatggcggac aggaaagtca gtgcggttgg ctcaaggata aatacggact ctcgtggcag
     8641 atcacgcctg acgtgttgct gaacacatgg tcggaagctg atcccgcgaa ggcgcagcgg
     8701 gtgatgcagg cgatgatggg catgaagaag atcatcatca aagacatcga agcggcggca
     8761 gccggctaag atctaaatcg gacctttgat cgctcgccac cgtcgcgctc tattgcaacc
     8821 ggtcgcgtaa tagtc
//
LOCUS       DASWTX010001361         3467 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_41566, whole genome shotgun sequence.
ACCESSION   DASWTX010001361 DASWTX010000000
VERSION     DASWTX010001361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3467)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3467)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3467
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41566"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3085
                     /locus_tag="VGD38_20720"
     CDS             <1..3085
                     /locus_tag="VGD38_20720"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0730521.1"
                     /translation="ALQLAMEGRFSESLKQANIGRDLDPLAVISRFAVVWCSYHSRRY
                     DEAYRFASATLDNDPRNLMMLYGISFVLSRLSRHAEAIEAAERCVELLGKASHTLGRL
                     GAAYAAAGNLEKGQKVLDEMDQLSARRFISPYHLALVNCALGRKEASLDFLEQAYETG
                     DAKVLWMGVDPELDPLHGHPRFNDLLQKLDHRLAALPPLAGQLREEHESIAVLPFRVM
                     SPTGENTGDEFLGVGLTDALITRLSNVRRLVVRPTSSVLRYKGANVDPLIAGRDLGID
                     FVVDGSIRRVGDRLRVTAQLLSVIEGTTRWAEQFDEDSTDVLQIEDSISEKVANALLP
                     QLTGDEQHQLSKRGTDNAEAFEAYLRGRYYWNSYTETGLAKALDSYQRAIKLDPDYAL
                     AYTGIADYYNWLGVFGIKPFAEASGAAKQAAAKAVELDATSAEAYTALGFATVCHDFD
                     WAVAEGQHRRALEINPNYATAHNWYAFHLTMEGRFDEGIEQMLRTRELDPLSPAVLQA
                     LGWCYYQSRRFNESIATFRSLLDATPDFPYGLITFSWVLRHAGSLDEAVKVAEKALDL
                     SGGGQLYFTALGATYAAAGNQEQARAVLERITQMMVHGYVSPYLRALIHLHLGERERS
                     LELLQQAHSIRDAWIVWLGVDPQWDPLRGDPAFEAILRDLRHPAAGRKIARTTATGTE
                     KKRKRVHIPPVTTQIINPAPDTQAGENEEAKQLFTAGRYYSTRRTAEGLRQAIERFER
                     AVELDPEYAAAHAELADCYALLNWYVEPPPSGAWERAKEAAMRAVKADPDLAEGHASL
                     GFVRLHYDRDWIDAERELRKAIQLKPSYQVAHRWYAYSLSAMGRHDEAYAEIERARQI
                     TPQSAVIATAVANILFHAGKFDETIAQCKKSLELDPGAMAAHTILRWAYELKGMHSEA
                     LGAFEQERSFAGDTPTTHAKRAHVLAAVGKRNEARAILEEIIAKRNQNWVTAYEIAII
                     YTLLDDFDSAFRWLAQAEREHAVGFTFVRVDPHLTKLRTDPRFNDFLRETEKTIP"
     gene            3082..>3467
                     /locus_tag="VGD38_20725"
     CDS             3082..>3467
                     /locus_tag="VGD38_20725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730522.1"
                     /translation="MTLKDKLDAWVREVVQWHFNPETGCPFWLEYAKNLSWDPRKEIQ
                     TYDDLSRFGFFQDEWLRGGPVRRWVPKGFAGRPVYTFETGGSTGVPKSRINIDDFRID
                     YELFSDTLPDEYFPRDSDWLSLGPTGP"
BASE COUNT          714 a         1062 c         1028 g          663 t
ORIGIN      
        1 cgcgctgcaa ctcgcgatgg aagggcgttt cagcgagtcg ctgaagcagg cgaacatcgg
       61 ccgcgatctc gatccgctcg cggtgatctc gcggttcgca gttgtctggt gctcgtatca
      121 ctcgcgccgt tacgacgaag cctatcgctt cgccagcgcc acgctcgaca acgatccgcg
      181 caatctgatg atgctctacg gcatcagctt cgtgctcagc cgtctcagcc gtcacgctga
      241 agcaatcgaa gccgcggaac gttgtgtcga acttctcggc aaagcgtcgc acacgctcgg
      301 ccggctcggc gcagcatatg ccgccgccgg aaatctggaa aagggccaaa aagttctcga
      361 cgagatggac cagctttccg cgcgccgctt catttcgccc tatcacctcg cgctcgtgaa
      421 ttgcgcgcta ggacgcaaag aggcgtcgct cgattttctg gagcaggctt acgagactgg
      481 cgacgcgaaa gtgctgtgga tgggcgtcga tccggagctc gatccgcttc acggtcatcc
      541 gcgtttcaac gacctgttgc agaagttgga ccaccgttta gcggcgctgc caccgttagc
      601 aggacaactt cgcgaggaac acgaatcgat cgccgtgctt cccttccgcg tgatgagccc
      661 gacgggcgaa aacaccggcg acgagtttct cggcgttggc ctgactgatg ctttgatcac
      721 gcggctcagc aacgtgcggc gtctagtggt gcggcccacc agcagcgtac tgcgttataa
      781 gggcgcgaac gtcgatccgc tcatcgccgg acgcgacctc ggcatcgact ttgttgtcga
      841 cggaagtatt cgccgcgtcg gcgatcgcct gcgtgtgacc gcgcagctct tgagcgtcat
      901 tgaaggcacc acgcgttggg ccgaacagtt tgacgaagac tcaaccgacg tattgcagat
      961 cgaagattcg atctccgaga aggtcgcgaa cgcgttattg ccgcagttaa caggcgacga
     1021 gcaacatcaa ctctccaaac ggggcactga caacgcagaa gcattcgaag cttacctgcg
     1081 cgggcgttat tactggaact cttacaccga aaccggtctc gcgaaagcac tcgacagtta
     1141 ccagcgcgcg atcaaactcg atcccgatta tgcgctggcc tacaccggca tcgccgatta
     1201 ctacaactgg ctcggcgttt tcggtatcaa gccgtttgcg gaagcctccg gcgctgccaa
     1261 gcaggccgcc gcgaaagcgg tcgagctcga tgcgacttcc gccgaagctt atacggcgct
     1321 cggctttgcc accgtctgcc acgatttcga ctgggccgtg gccgaaggcc aacatcgccg
     1381 cgcgctcgag atcaatccga actacgcgac cgcgcacaac tggtacgctt ttcacctgac
     1441 gatggaaggg cggttcgacg aaggcatcga acagatgctg cgcacgcgcg agctcgatcc
     1501 actctcgccg gcagtgctac aggcacttgg ctggtgttac taccagtctc gccgtttcaa
     1561 tgaatccatc gcgacgtttc gcagtctgct cgacgcgaca ccggactttc cctacggcct
     1621 gatcactttc tcgtgggtgc tgcggcacgc cggctcgctg gacgaagccg tgaaggtagc
     1681 cgagaaggcg ctcgatcttt cgggtggtgg acagctttat ttcaccgcgc tgggcgcaac
     1741 ctacgcggcc gcgggaaacc aggagcaggc gcgcgcggtg ctggaacgca ttacgcagat
     1801 gatggtccat ggctacgttt caccgtacct gcgtgcgttg attcacttgc atctcggtga
     1861 gcgcgagcgc tctctcgaac tgctccaaca ggcccactcg atcagagacg catggatcgt
     1921 gtggctcggc gtcgatccgc aatgggaccc acttcgcggt gaccccgcgt ttgaagccat
     1981 acttcgcgat ctgcgtcacc cggctgcggg ccgcaagatc gcacgcacaa ccgcaaccgg
     2041 aaccgagaag aaacgaaagc gcgttcacat tccgccggtc acgacgcaga tcatcaatcc
     2101 cgcgccggac acacaggcgg gtgagaacga agaagcgaaa cagctcttta ccgccggacg
     2161 ttattactcg actcgacgaa ccgccgaagg attgcgccag gccatcgagc gtttcgaacg
     2221 cgcagtcgag ctcgatcctg aatacgctgc cgcgcacgcg gagctcgccg attgctacgc
     2281 gctgctcaat tggtacgtcg aaccaccgcc atcgggcgcg tgggagcgcg cgaaggaagc
     2341 agcaatgcgc gcggtcaaag cggatcccga tcttgctgaa ggccacgcgt cgctcggctt
     2401 tgtcagactg cactacgatc gcgactggat cgacgccgaa cgcgaactgc gcaaagcgat
     2461 tcaactgaag ccgagttacc aggtggccca tcgctggtat gcttacagtc tttcggccat
     2521 gggccggcac gacgaagcct acgccgagat cgaacgcgcg cggcagatca cgccgcagtc
     2581 agcagtgatt gcgacggcgg tggcaaacat cctgttccat gcgggcaagt ttgacgaaac
     2641 gatcgcgcag tgcaagaagt ctttggagct cgatcccggc gcgatggccg cgcacacgat
     2701 cctgcgttgg gcctacgaac tgaaaggcat gcactcggag gcgctcggcg cgttcgagca
     2761 ggaacggagt tttgccggcg acacgccgac cacgcacgct aagcgcgcgc acgtgctcgc
     2821 ggcggtcggc aagcgcaacg aagcacgcgc gattctcgaa gagatcatag cgaaacgaaa
     2881 tcagaattgg gtcacggcct acgagatcgc catcatctac acgttgctgg acgattttga
     2941 cagcgcgttt cgctggttgg cccaggccga acgcgagcac gccgtcggtt tcacgttcgt
     3001 tcgcgtcgat ccacacctga cgaagttgcg caccgatcca cgattcaatg attttctacg
     3061 cgaaacggag aagacgattc cttgacgtta aaagacaagc tggatgcctg ggttcgagaa
     3121 gtcgttcaat ggcatttcaa tcctgaaacc ggttgcccgt tctggctcga gtacgcgaag
     3181 aacctctcgt gggacccgcg caaagagatt caaacctacg acgacctttc acgcttcggt
     3241 ttttttcagg acgaatggct gcgcggtggg ccagtgaggc gttgggtgcc gaagggtttt
     3301 gccgggcgtc cggtttacac gtttgagacc ggcggcagca cgggcgtgcc gaagtcgcgt
     3361 atcaacatcg acgacttccg catcgattac gagttgttca gcgacacgct tccggatgaa
     3421 tactttccgc gcgactcgga ttggttgtcg cttggaccaa ccggccc
//
LOCUS       DASWTX010001362         1563 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_324039, whole genome shotgun sequence.
ACCESSION   DASWTX010001362 DASWTX010000000
VERSION     DASWTX010001362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324039"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..649
                     /locus_tag="VGD38_20730"
     CDS             <1..649
                     /locus_tag="VGD38_20730"
                     /inference="COORDINATES: protein motif:HMM:NF024743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat-containing
                     protein"
                     /protein_id="HEY0730523.1"
                     /translation="VVAKPTSGSEVRVIAKKSSRYSDASDVRIEVVEHAGGVTICAMY
                     PTSSRDRENECLPGARGNSSSHDNDTEVDFEVEVPRGVKFTGRSVTGRVVATGLTADV
                     KANSVSGSVRVSTTGLVQASTVSGSIDVVMGRTDWTDALRFSTVSGNITIEMPGDLNT
                     DVEVTTVSGSLSSDWPMSTTRRRFGPRNMQGRIGDGGRELVLSTVSGSIELKKSN"
     gene            744..1433
                     /locus_tag="VGD38_20735"
     CDS             744..1433
                     /locus_tag="VGD38_20735"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS and ACT domain-containing protein"
                     /protein_id="HEY0730524.1"
                     /translation="MTPNVITAAPTTTLADALSLTRGNRIRHLPIMEKDQLVGLVTDR
                     DLRLAMPPVWASDADHNELRDAMHTRTVAEVMVKNIITTTPDTPIEEAARSLYEHRIG
                     CLPVMQDDEVIGIITETDVLRAFVELFGVDENGTRLEILINNKPGELSRVVRAIGVEF
                     KLNITGIVVPPVDETAAEQVAVVRVATRDANGLMEHLRRIGYRVGSPSLDFELAHAAP
                     TPIRHWAAEGF"
BASE COUNT          341 a          418 c          489 g          315 t
ORIGIN      
        1 cgttgtcgcg aagccgacct cgggttcaga agtacgcgta atcgctaaaa agagttcacg
       61 ttacagtgac gcgtctgatg tcagaatcga agtcgtcgag cacgcgggcg gggtgacgat
      121 ttgcgcgatg tatcccacgt cctcacgcga tcgtgagaac gaatgcttgc ccggagcgcg
      181 cggcaactcg agcagtcacg ataatgacac agaagtcgat ttcgaagtgg aagtgccgcg
      241 cggtgtgaaa ttcaccggcc gctccgtgac cggacgtgtt gttgcgactg gacttactgc
      301 agatgtgaaa gcgaacagcg tttcggggag cgtgcgggtg agcaccaccg gattggtgca
      361 agcaagcacg gtcagtggat cgatcgacgt cgtaatggga cgtaccgatt ggactgatgc
      421 gcttcggttc tccaccgtaa gcggcaacat cacgatcgag atgccgggag atctgaacac
      481 ggatgtcgag gttactacgg taagcggttc gctgtcgagc gattggccca tgagcaccac
      541 gcgtcgccgt tttgggccgc gcaatatgca agggcgtatc ggcgatggcg ggcgtgagct
      601 ggtgctgtcc acagtgagcg ggtcaatcga gctgaagaag tcaaactaag cttgcaacgc
      661 cccaaggggc gatgtacttt cgcgatagac tcctctggaa ctcttagcgc aggacatcac
      721 cccgaatgtt agtgcgcagc aaaatgacgc cgaacgtaat tactgcggcg cccactacca
      781 cgcttgcgga tgcgttgagt ttgacacgcg gcaaccgcat ccgccatctg cccatcatgg
      841 aaaaagacca gttggttggt ctggtaaccg atcgcgattt gcgtttggcc atgccacccg
      901 tatgggcatc tgatgccgac cacaacgagc tgcgtgacgc catgcacacg cgcacagtgg
      961 cggaagtcat ggtgaaaaac atcatcacga caacgcccga cacgccgatc gaagaagcag
     1021 cccgttcgct gtatgagcat cgcattggtt gtttgccggt catgcaggac gatgaagtga
     1081 tcggcatcat cacggagacc gatgtgctgc gcgcgtttgt cgagttgttc ggtgttgatg
     1141 aaaacggcac gcgcctggag atcctgatca acaacaaacc gggcgagttg tcgcgcgtcg
     1201 tgcgcgcgat tggtgtcgag ttcaagctga acattacagg tatcgtggtt ccgccggtcg
     1261 atgaaactgc ggccgagcag gtagcggtgg tgcgtgtcgc gacgcgtgat gcgaatggcc
     1321 tcatggagca tctgcgccgg atcggctacc gtgttggttc tccatccctc gacttcgagt
     1381 tggcgcacgc cgcgcccact ccgatccgcc actgggccgc cgagggattt tagcagagca
     1441 tgctggacaa ccgggttctt atcgtagacg acgagcctgc cgtattgaag gtcgtcgcga
     1501 agatggtcga acgcctcggt tataaagctg tgatcgcact gaccggcaaa gacgcgctgc
     1561 aga
//
LOCUS       DASWTX010001363         2689 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_281052, whole genome shotgun sequence.
ACCESSION   DASWTX010001363 DASWTX010000000
VERSION     DASWTX010001363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2689
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281052"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1185
                     /locus_tag="VGD38_20740"
     CDS             <1..1185
                     /locus_tag="VGD38_20740"
                     /EC_number="2.5.1.48"
                     /inference="COORDINATES: protein motif:HMM:NF005871.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine gamma-synthase"
                     /protein_id="HEY0730525.1"
                     /translation="RNDTAAREFLTGKIMGFATTAIHVGSEPDEATGAVTVPIYQTST
                     YAQDALGQTRKGYEYARTQNPTRSAVERNIAALEGARFGFAFASGMAAIDATLRLVKA
                     GEHVIVSDNTYGGTARLFNRILANYGIEFEYVDTSDALNVEAAIKPNTKMVFLETPTN
                     PVMIVTDLKEISEIAHRAGARVVCDNTFLSPYLQRPMEFGVDIVVHSTTKYLNGHSDG
                     VGGIVVLNDEEDANWIGFVQNSAGAILSPFDSWLVMRGTKTLALRMEQHDKSGRAVAA
                     FLEEHPKVRKVYYPGSASHPQHALARRQQRGFGGMVSFDVGSLAAAKTVLDSVKLCTL
                     AESLGGVETLISHPATMTHASVDVEKRERLGITDGLVRISVGIEDTDDIIADLDQALD
                     KV"
     gene            1257..2183
                     /locus_tag="VGD38_20745"
     CDS             1257..2183
                     /locus_tag="VGD38_20745"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family serine/threonine-protein
                     phosphatase"
                     /protein_id="HEY0730526.1"
                     /translation="MIVELYAKSDVGRVRRGNEDNFLVLDLSSEQTWTGADGATPPER
                     LTRFNLGQKGLVLVVSDGMGGALAGDVASRMAVDSVREMLLGTEGEEACDPNVDLVEC
                     LKNATIYANLAIHLKSQEDSRCAGMGATFTGAAIRGDNLDLVQVGDSRGYVIRKDHIR
                     LATKDQSLVQQLVDVGQISESEAETHMFRNVILQALGAQREVAPVTGRIRLRQGDVLL
                     LCSDGLSGKLRSEDIQQIIVNSQGDLAKACDHLIDEANNRGGEDNITVVLARFQGEDL
                     EEPATDRITIELPPLEEDKTLDDNYEADTEPH"
     gene            complement(2180..2671)
                     /locus_tag="VGD38_20750"
     CDS             complement(2180..2671)
                     /locus_tag="VGD38_20750"
                     /inference="COORDINATES: protein motif:HMM:NF014062.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HEY0730527.1"
                     /translation="MNDWFWILWTILGAILIVAEIFTSGFVLLWFGIGALAAAFVGFL
                     GVDSLAVQFMVFAVVSIALTAASRTIFLNYFSREKTGESLRSGVDALPGQIGTVVSSS
                     AGALQEGAVKVFGSTWTAYPCPGEPPLEAGERVSVERVQGASIYVRRVGGDPEWRQKA
                     LPD"
BASE COUNT          645 a          766 c          763 g          515 t
ORIGIN      
        1 cggaacgata ccgcagccag ggaatttttg acgggtaaga ttatgggatt tgcaacgaca
       61 gccattcacg tcggttcaga acctgacgaa gccactggcg cggtcaccgt accgatttat
      121 caaacgtcga cctacgcgca ggacgcgctc ggccaaacac gaaagggcta cgaatacgcg
      181 cgcacacaaa acccgacgcg atccgcggtc gaacgcaaca tcgccgcact cgaaggcgcg
      241 cgattcggtt tcgccttcgc ctcgggcatg gcggcgatcg acgcgacgct gcgcctcgtg
      301 aaagccggcg aacacgtcat cgtttccgat aacacctacg gcggcaccgc gcgcttattc
      361 aatcgcattc tcgcgaatta cggaatcgag tttgaatacg tcgacacttc cgacgcgctg
      421 aacgtcgaag ccgcgatcaa accaaacacg aagatggtct ttctcgagac gccgacgaat
      481 ccggtgatga tcgttacaga cctgaaggaa atcagcgaga tcgcgcatcg cgcgggcgcg
      541 cgcgtcgttt gcgacaacac gtttttgtcg ccttatttac agcgcccgat ggaattcggc
      601 gtggacatcg tggtccactc gaccacgaaa tatctaaacg gacattcgga cggcgtcggc
      661 ggcatcgtgg ttttgaacga cgaagaggac gccaattgga ttggattcgt ccagaacagc
      721 gcgggcgcca tcctgtcccc tttcgactcg tggctggtga tgcggggcac aaagaccctc
      781 gcgctccgga tggaacaaca cgataaatcg ggccgcgcgg tggcagcttt tctcgaagaa
      841 cacccgaaag tgcgaaaagt ttattacccg gggtccgctt cgcacccgca acacgcgtta
      901 gctagaagac agcaacgcgg ctttggcggc atggtctcgt ttgatgtcgg ctcgctggcg
      961 gcggcgaaga cagtcctcga ttcggtaaag ttgtgtactc tggcggaaag tctcgggggc
     1021 gtggagactc tgatttctca tccggccaca atgacacacg cttcagtcga cgtggagaag
     1081 cgagaacggc tcggaattac ggatggactc gtgcgaattt ccgtgggcat tgaggacacg
     1141 gacgacatta ttgccgatct ggatcaagcg ctggacaaag tttaatttag ggttacaatt
     1201 ggccgttctc aacctttaat acttttatac aagctcccta aataaacgct ctccttatga
     1261 tcgtagagtt atacgccaaa tcagatgttg gccgggtgcg acgtggtaac gaggataatt
     1321 tcctggtcct cgatctgtct tccgagcaaa catggaccgg ggcggatggg gccacgccac
     1381 ctgaaagatt gacccgtttc aacctgggcc aaaaaggact cgtgttggtc gtctctgacg
     1441 gcatgggagg agcgctcgcg ggagacgttg ccagccgcat ggcggtcgat tccgtgcgcg
     1501 agatgttgct cggcactgaa ggcgaagaag cgtgcgatcc gaatgtcgat ctggttgagt
     1561 gtctgaaaaa cgccacgatc tacgcgaacc tcgcgattca cttaaagagt caggaagact
     1621 cacgctgcgc gggaatggga gcgacgttca caggcgcggc gatccgcggc gataatctcg
     1681 atctcgttca ggtcggcgac agccgcggtt atgtcattcg caaagaccac attcgactcg
     1741 cgacgaaaga ccagtcgctc gtgcagcaac tcgtcgacgt cggacagatc agtgagtcgg
     1801 aagccgagac gcacatgttt cgcaacgtga tcctgcaggc gctcggcgcg caacgtgaag
     1861 tggcgcctgt gaccgggcgg attcgtttgc ggcaaggtga cgtgctgttg ctttgcagcg
     1921 atggactatc ggggaaactg cgttctgagg atattcagca gatcatcgtc aacagtcagg
     1981 gagatctcgc gaaggcatgt gaccacctga ttgacgaggc caacaatcgc ggcggcgagg
     2041 acaacatcac cgtggtcctg gcgcgttttc aaggtgagga tctcgaagaa ccggccaccg
     2101 atcgcatcac gatcgaacta ccaccactcg aagaagacaa aaccctcgac gacaactacg
     2161 aagcggatac ggaaccgcac taatccggta acgctttctg ccgccactca ggatcgccac
     2221 caacacgccg cacgtagatt gatgcgccct gaacgcgttc gacgctgaca cgttcgcctg
     2281 cttccaaagg cggttcgccg gggcaaggat aggcggtcca cgtcgagccg aaaactttta
     2341 ccgcgccttc ctgcaacgcg cccgcactcg atgagacgac cgtcccgatc tgtccgggca
     2401 gcgcatcgac gccgctgcgc aacgattcgc ctgttttctc gcgtgaaaag tagttgagga
     2461 agatcgtcct cgacgccgca gtcaaggcaa tcgaaacaac cgcaaaaacc atgaactgaa
     2521 cagcgagact atcgacgccg agaaatccaa caaacgcagc cgcaagggcg ccgatcccaa
     2581 accacagcag cacaaacccg gacgtgaaga tttcggccac gatcagtatg gcgccgagta
     2641 tggtccacaa aatccaaaac cagtcgttca tcccttaaac acgttcttc
//
LOCUS       DASWTX010001364         3323 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_258189, whole genome shotgun sequence.
ACCESSION   DASWTX010001364 DASWTX010000000
VERSION     DASWTX010001364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3323)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3323)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3323
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258189"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..564)
                     /locus_tag="VGD38_20755"
     CDS             complement(<1..564)
                     /locus_tag="VGD38_20755"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEY0730528.1"
                     /translation="MKSSYVFKKLSLLACCLLFVMTAGAQQVPAGFVATQVATGMVSV
                     TRMEVLPDGRILVCEQSGRVRLIQNGVLQSTPFLTIDADSFSEHGLLGITLDPAFAAN
                     NFFYVYYTAKTPSPHNRISRFTAGTTSANPASEVVLFDLDNSTGPLGWHQGGDIAFGP
                     DGKLYVAVGDDRNGANSQSVTSLFGKIL"
     gene            complement(580..1551)
                     /locus_tag="VGD38_20760"
     CDS             complement(580..1551)
                     /locus_tag="VGD38_20760"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY0730529.1"
                     /translation="MNAATEPDVSVIVATYNRCEVLRGALERLLDQETAGTTYEVIVA
                     DNNSTDDTRRVVEELRAKSNVKVVYCFEPEQGVSYARNTGVAHARAPILAFTDDDIRP
                     ARDWVAAVHEGFKRFPEADCIGGKVLPDPSIQFPEWLTEKHWTPLALLNLGDEPLVLE
                     VVNGAGLVGANFAMRAAALAEVGFFRPELQRVKGGIGSLEDTELQLRLAVAGKRLMYL
                     PELIVYTQVIDERLDKAYHRRWHFGHGYFYAVMRDEQFEESKFRLLDVPAHLYRSTFS
                     NLFDWVRCRLTNDIDLGFQRELELRFFWGFFRKRFAERQSLLRLRQR"
     gene            complement(1567..2814)
                     /locus_tag="VGD38_20765"
     CDS             complement(1567..2814)
                     /locus_tag="VGD38_20765"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY0730530.1"
                     /translation="MIDLSLKQVSKRYRIRSEAHTGTTWVSKLASLTRKEDFWALKDV
                     SFDVPRGQALGIIGHNGAGKSTILKLLSRITTPSVGEIMINGRLSALIEVGSGFHPEL
                     TGRENIYLNGSILGMMRREITEKLDSIVEFAELRQFIDTPVKRYSSGMYVRLGFSIAA
                     HLNPDILLLDEVLAVGDASFQQKCIERITELKNGGKTIVFISHDLRAVQQLCDRVILL
                     KKGQIEADGDPEATIAFYQSLSQQLGGHAAGRLGQEPSHEAEVTSLTFYDDLGNECLS
                     FETGKPMKAVLNYRVNKPLTDVIFEVQFHSQENQLCTFFSSETIPEQIDLETGEGTMV
                     FDCSAVGLGPGVYFVDTGIRHRRAPYGIDIDWRRRCLAVRIDYDRHLRNTFYMPYVCR
                     HTPPLPSELSAVALSPPTATVLK"
     gene            complement(2817..>3323)
                     /locus_tag="VGD38_20770"
     CDS             complement(2817..>3323)
                     /locus_tag="VGD38_20770"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0730531.1"
                     /translation="HTQLVTKVYFAREILPLTYVSAALFDFCVASTFLIALFFYYGVS
                     LTVYALWAIPIMVLLTMLATAFSLMFSVIQVRFRDVGVAMPLLLQLWMFAVPVVYPLS
                     AVPERLRGFYALNPLVGVIENFRRVMLQGMPPDLYSLGISALVAAVLLPAAYLYFKRV
                     EATMADII"
BASE COUNT          792 a          985 c          888 g          658 t
ORIGIN      
        1 caggatcttt ccgaacaatg aggtgactga ctgggagttg gcgccgttgc gatcatcgcc
       61 gacagcaacg taaagcttac cgtctggtcc aaaggctatg tcgccgccct ggtgccagcc
      121 gaggggaccg gttgaattgt cgagatcgaa aagaactact tcacttgccg gattggcgct
      181 cgtcgtgccc gcggtaaaac ggctgatgcg attatgcgga gacggagtct tcgcggtgta
      241 ataaacgtag aagaagttgt tggcggcaaa agccggatcg agcgtgatgc cgagtagacc
      301 atgctcgctg aatgagtcgg cgtcgatggt tagaaaaggc gtcgactgaa gcacaccatt
      361 ttgaatcagc cgcactcttc cggactgttc gcaaacgagt atgcgcccgt ccggcagcac
      421 ctccatgcgc gtaacgctga ccattccggt ggcgacttgt gtcgcgacaa accccgcggg
      481 cacttgctgc gcgccagccg tcatgacaaa cagcaggcag cacgccagca aagagagctt
      541 tttgaagacg tatgatgatt tcattggaat acccccgagt tatcgttgtc tcagcctcag
      601 gagcgattgg cgttccgcga accgtttacg gaagaatccc caaaaaaagc gaagctccag
      661 ttcgcgctga aatccgaggt ctatatcatt tgttagccgg catctcaccc aatcgaacag
      721 attcgaaaac gtgctccggt acagatgagc aggcacgtcc aacagtctga acttcgactc
      781 ttcaaattgt tcgtcgcgca ttaccgcata aaagtaaccg tgaccaaaat gccagcgccg
      841 gtgatatgcc ttgtccaggc gttcgtcgat cacctgggtg tagacaatca attcgggaag
      901 gtacatcagg cgctttccgg ccacggccag gcgcaactga agttccgtat cttccagcga
      961 accgatgcca cccttaacgc gctgtaactc cggtcgaaag aaaccgactt ccgcgagcgc
     1021 cgcggcccgc atcgcaaaat ttgctccgac cagccccgcg ccattcacca cctccagcac
     1081 gagcggctcg tcgccgagat tcagcagcgc gagcggcgtc cagtgctttt cagtcaacca
     1141 ctccggaaac tggatcgacg gatcgggtaa cactttgccg ccgatgcaat ccgcttcggg
     1201 aaatctcttg aacccttcat ggaccgcggc tacccaatcg cgcgccggcc gaatgtcgtc
     1261 gtcagtaaaa gcaagaatcg gcgcgcgcgc atgggccaca ccggtgttgc gcgcgtaaga
     1321 aacaccctgc tccggttcaa agcaatagac gactttaacg ttcgacttcg cgcgcaactc
     1381 ttcgactaca cgccgcgtgt cgtcagttga attgttatcc gcgacgataa cttcgtacgt
     1441 ggtcccggca gtttcctggt ccagcaatct ctcgagggcg ccacgcaaaa cttcacagcg
     1501 attgtaggtg gctacgatta ccgaaacatc aggctctgtc gctgcattca tcagtcaacg
     1561 ccaacatcat ttcagaacgg tagcagtcgg gggcgaaagc gcaacggctg acaactccga
     1621 aggcaatgga ggcgtgtgcc ggcaaacgta cggcatgtag aacgtgttgc gcagatgccg
     1681 atcgtaatca atcctgactg cgagacagcg gcggcgccag tcgatgtcga tgccgtaagg
     1741 cgcgcgtcga tgcctgattc cggtgtcgac aaaataaacg cctggtccga gtccgacagc
     1801 cgagcaatcg aacaccatcg tcccttcgcc ggtttcgaga tcgatctgtt cgggaatcgt
     1861 ttcactgctg aagaaagtac acaactgatt ttcctgcgag tgaaactgca cttcaaagat
     1921 cacatccgtc agtggcttgt tgacgcggta gttcaaaacc gccttcatcg gctttccggt
     1981 ttcaaaggaa agacactcgt tgccgaggtc gtcatagaac gtcagagacg tgacttcagc
     2041 ttcgtgactc ggctcctggc caagccggcc ggcggcgtgc ccgccaagct gctgcgacag
     2101 gctctgatag aacgcgatcg tcgcttccgg atcgccatca gcttcgatct ggcccttctt
     2161 caaaagaatc acgcgatcgc acagttgctg caccgcgcgc agatcgtgtg agatgaacac
     2221 gatcgtcttg ccgccgttct tcaactcggt gatccgctcg atacacttct gttgaaacga
     2281 cgcatcgccg accgcaagca cttcgtccag cagcagaatg tctggattca aatgcgccgc
     2341 gatcgagaat ccgagacgca cgtacatgcc ggacgagtag cgcttgaccg gcgtgtcgat
     2401 gaattgccgc agctccgcga actcgacgat gctgtcgagt ttctccgtga tctcgcgccg
     2461 catcatgccg aggatcgaac cgttgagata gatgttttcg cgtcccgtta gctcgggatg
     2521 aaagcccgat ccgacttcga tcagcgccga gagccggccg ttgatcatga tctcgccaac
     2581 gctcggcgtc gtgatccgcg agagcagttt caggatcgtg ctcttgcctg ctccgttatg
     2641 accgatgatg ccgagcgcct gtccgcgcgg cacgtcgaag ctgacgtcct tcagcgccca
     2701 gaagtcttcc ttgcgcgtga gcgacgcgag tttgctcacc cacgtagtgc cggtgtgcgc
     2761 ctcgctgcga atgcgatacc gtttcgagac ttgcttgaga ctcagatcga tcattgttaa
     2821 atgatgtcag ccatcgtcgc ttcgacgcgc ttgaagtaca ggtaagccgc cggaagcaga
     2881 accgccgcaa ctaaagccga gataccaagc gaataaagat cgggcggcat gccttgcagc
     2941 atcacgcgcc gaaaattctc aatcacgcca accagcggat tgagcgcata aaacccgcgc
     3001 aaacgctcgg gcaccgcgct cagcggataa acaaccggaa ccgcaaacat ccacaactga
     3061 agcaacagcg gcatcgccac gccaacgtcg cgaaagcgca cctggatgac cgaaaacatg
     3121 agcgaaaacg ccgtcgccag catcgtcagc aacaccatga tcggtatcgc ccacagcgcg
     3181 taaaccgtta acgaaactcc gtaatagaag aacagcgcga tcaaaaacgt cgacgctacg
     3241 cagaagtcaa acaacgccgc actgacgtaa gtcaacggca aaatctcacg cgcaaagtaa
     3301 accttcgtta ccaactgcgt gtg
//
LOCUS       DASWTX010001365         2014 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_212437, whole genome shotgun sequence.
ACCESSION   DASWTX010001365 DASWTX010000000
VERSION     DASWTX010001365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2014
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212437"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..592
                     /locus_tag="VGD38_20775"
     CDS             <1..592
                     /locus_tag="VGD38_20775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730532.1"
                     /translation="AIVPLGAFWMPRIAEFQLGKIQRAFVACIAVIVLMAVVLFIYMR
                     PISFEFIERRAMSKEYKHRLAQVPPDAVMISGSQTIAVHYWAAISEGDWKAIGTGGGW
                     PGDRLFSVVEQYLSVGRRVFIDTDPRWWMPCGWQRDEIPTIVKLEEHFSFRRVTETIY
                     ELRPLHDPAAQDHPNLKRLLPENRPEDTKKCAPARS"
     gene            610..1848
                     /locus_tag="VGD38_20780"
     CDS             610..1848
                     /locus_tag="VGD38_20780"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0730533.1"
                     /translation="MPYEIFLAFRYLRSRPKRRLARVTALMAILGIAMGVAALIVALA
                     LGNGFRDEMRDKILQGTEHLSVLRSDGRAIDDHARVGERLRAVEGVVSASATTYDGAL
                     VRGAAGSAYAVLRGIEAGGNGTQAQRWLIQGRIDPLFDATGPIDGGGAGETSTPQAVV
                     GAELANKVGARVGDTLQVVPFDGSQNNSTRRLRVAGIFRSGLFEYDSTWIYVSFDTAT
                     AFAGSQHAASVMSVQVDDADNVKQIAARVVSTLGDGYTVVDWQQANQPLFTALTLERR
                     MAMFIIGLIVAIAALNITTMLILVVVERRRDIAVLSTLGATRLGVMLVFIIEGAVVGA
                     IGAVTGVLVGLAACFIGNHYKLVSLPPDVYSISNVPLHANFSETLLAAAIAFGLSVLA
                     TIYPARNAARMRPVEVLRDA"
BASE COUNT          376 a          505 c          676 g          457 t
ORIGIN      
        1 ggcgattgtg ccgcttggcg cgttctggat gccgcggatt gcggagtttc agttgggaaa
       61 aattcaacgc gcattcgtgg cgtgcatcgc ggtgatcgtg ttgatggccg tggtcctgtt
      121 catttacatg cggccgatca gttttgagtt tatcgaacgg cgcgcgatga gcaaggaata
      181 caagcaccgg ctcgcgcaag tcccgcctga tgcggtgatg atttccggtt cgcaaacgat
      241 cgcggtgcac tactgggcgg cgattagcga gggcgattgg aaggcgattg gaacgggtgg
      301 cggttggccc ggagatcgat tgttttcggt tgtcgagcag tatctgagtg tagggcggcg
      361 tgtgtttatc gataccgatc cccgttggtg gatgccgtgt ggttggcaac gcgatgagat
      421 accgacgatt gtgaagctgg aagagcattt tagttttcgg cgtgtgacgg aaacgattta
      481 tgagctgcgg ccgctgcacg accctgctgc tcaagatcat ccgaacttga aacggttgtt
      541 gcctgagaac cggcctgaag acacgaagaa gtgtgcgccg gcgcgttctt gaaaagggat
      601 tttagggatt tgccgtacga gatttttttg gcgttcaggt atttgcggtc gcggccgaag
      661 cggcggcttg cgagggttac ggcgttgatg gcgatactcg gtattgcgat gggcgtcgca
      721 gcgttgattg tggcgctggc gttggggaat ggtttccgcg atgagatgcg cgacaagata
      781 ctgcagggca ccgagcattt gagtgtgttg cgcagtgatg gccgggcgat tgacgaccac
      841 gcgagagtgg gcgagaggtt gcgggcggtt gagggtgtgg tgagtgcgtc ggctacgacg
      901 tatgacggcg cgcttgtgcg tggtgctgcg ggttccgcgt atgcggtgtt gcgaggcata
      961 gaggctgggg ggaatggtac gcaagcgcaa cgttggttga tccaaggaag gatcgacccg
     1021 ctgtttgacg ccacaggacc aattgacggc ggaggagcag gtgagacgtc aactccccag
     1081 gctgtggttg gtgctgagct cgctaacaaa gtaggagccc gtgtcggaga tactttacag
     1141 gtggtcccgt tcgatgggtc gcagaacaac tcaacacgtc gtttgcgagt ggccgggatt
     1201 tttcgctcgg gtttgtttga gtacgactcg acctggatct acgtgtcctt tgacacggca
     1261 actgcttttg ccggaagcca gcacgctgct tcggtcatga gcgtccaggt cgacgacgcg
     1321 gataacgtaa agcagatcgc ggctcgcgtg gtgagcacac tcggcgacgg ctacaccgtt
     1381 gtcgactggc aacaggcaaa tcaaccactc ttcaccgcgc tgacactcga acgccgcatg
     1441 gcgatgttca tcattggtct aatcgtcgcg attgcggcgc tcaacatcac cacgatgctg
     1501 atactcgtcg tcgtcgaacg ccgtcgcgac atcgcggtcc tcagcacgct cggcgcaacg
     1561 cgccttggcg tgatgctggt gttcatcatc gaaggcgcgg tagtcggcgc gatcggcgcc
     1621 gtaactggcg tgttggtcgg actcgccgcg tgcttcatcg gcaatcacta caaactcgtc
     1681 tccttgccgc cggacgttta ctcaattagt aacgtgccgc ttcacgcaaa cttcagcgaa
     1741 acacttctcg cggccgcgat cgcgtttggt ctaagcgtgc tcgcgacgat ctatccggct
     1801 cgaaacgcag cgcgcatgag accagtcgag gtcctgcgcg atgcctgacc gcctcgaagt
     1861 cgtcgatctg cgaaagagtt ttgtagcgcc gaacggcgaa cggatcgaag tcttacgcag
     1921 cgtgacgttt acggtgaacc ccggcgaatg tgtggcgatc acgggcgctt cgggatcggg
     1981 caagtcgacg ctgcttcagc tcgtcggtgg cctg
//
LOCUS       DASWTX010001366         1749 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_63253, whole genome shotgun sequence.
ACCESSION   DASWTX010001366 DASWTX010000000
VERSION     DASWTX010001366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1749
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63253"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..257)
                     /locus_tag="VGD38_20785"
     CDS             complement(<1..257)
                     /locus_tag="VGD38_20785"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0730534.1"
                     /translation="MAQRASVVRGVVSDELGAVVVGGTVSLTGATTLTTVTDELGAYR
                     FNGIPAGRYSLTIAQPGFAMFQTSVALSDGQSRTINVTLRIA"
     gene            complement(327..1355)
                     /locus_tag="VGD38_20790"
     CDS             complement(327..1355)
                     /locus_tag="VGD38_20790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730535.1"
                     /translation="MFLLIFVVCGWFFAAQTSSVVGTVVEHNSSTLTITTDQNVSVRL
                     EPTDKTVYLRVPAGAHSLEQAAPIGLGDIVPGDRVLARGTQTGNSFAAVRIVVLSKSD
                     LATKRERELEQWRTRGIAGVVKALNPATGEMSVELRGTTPASAIVVQVGAAQFRRYTP
                     ASINFEDAKQSSFAEVGVGDQVRALGDKSTDGKSFKAEAVVSGSFRTIGATLTAIDLE
                     KGEISATPLEQKKPIQISILKESSVRRIPAALVPSLAQKARANSQAEVQQMIESLPVV
                     ALSDLKPGDVVSITGIREKEDTCLTAIKLVAGMDAVLRALAPQPGRPQTVRLSAGLPT
                     AFDFSVIP"
     gene            1493..>1749
                     /locus_tag="VGD38_20795"
     CDS             1493..>1749
                     /locus_tag="VGD38_20795"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0730536.1"
                     /translation="MEAPAAQTVGNILVIDDDVELCKLVSRFLVREGFQIDAVNGGAQ
                     GIERALSGDYALVVLDVMMPEMSGFDVLRRIRAESAMPVLML"
BASE COUNT          360 a          537 c          491 g          361 t
ORIGIN      
        1 gcgatgcgca aggtgacgtt gatcgtgcgc gactggccgt cagagagggc cacgcttgtc
       61 tgaaacattg cgaagcctgg ttgcgcaatc gtgagcgaat agcggccggc gggaattccg
      121 ttgaaacgat acgcgcccag ctcgtcggtg actgtcgtta gtgttgtcgc acccgtaaga
      181 gaaacagttc ctccaacgac caccgcgccg agttcgtcgg aaactacacc acgcacgacc
      241 gaagctcgtt gggccatcgt cgttaacggg aaaaccgcca ggaataacac agacagaaga
      301 atggattgaa cttcatcatt tgtcctctac ggaatgacgc tgaagtcgaa cgcggttggc
      361 agaccagcgc tcaaacgcac ggtctgtggt ctccccggtt gcggcgccag cgccctgagc
      421 acggcatcca tgcccgccac gagcttgatc gccgtgagac atgtatcttc cttctccctg
      481 attcccgtta tcgaaaccac gtcgccgggt ttcagatccg acaacgccac gacaggaaga
      541 ctttcgatca tctgttgcac ttcggcctga ctgttcgcac gggccttctg cgcgagcgac
      601 ggcacgagcg cggctggaat gcggcgcacg gaagattctt tcagtatcga gatctgaatc
      661 ggtttctttt gctcgagagg ggtggctgag atctccccct tctcgagatc gatcgcggtc
      721 aacgtcgcgc cgatcgtcct gaacgaaccg gaaacaactg cttccgcttt aaacgacttg
      781 ccatcagtgc tcttgtcgcc gagcgcgcgc acctgatcgc ctacaccaac ctccgcgaag
      841 ctgctttgtt tcgcgtcttc gaaattgatc gacgccggcg tgtaacggcg aaactgcgcc
      901 gcgcccactt gaacgacgat cgcgctcgcc ggcgttgtgc cgcgcagttc gacactcatt
      961 tcaccggtcg cgggattcag cgccttcacg acgcctgcga ttccccgcgt gcgccattgt
     1021 tcgagctcgc gttcacgctt cgttgcaaga tcagactttg aaagaacgac gattcgcacc
     1081 gcggcaaagc tgttacctgt ttgcgttccg cgcgccagaa cgcgatcgcc cggcacgata
     1141 tccccgagcc cgatcggcgc cgcctgttcg agcgagtgag cgccggccgg aacacggaga
     1201 taaaccgtct tatccgtcgg ctcgagccga acgctgacat tctgatcggt cgtgatcgtg
     1261 agagtgctgg agttatgctc gacaacggtg ccgacgacac tcgacgtttg cgccgcgaaa
     1321 aaccatccac agactacgaa gatcagtaag aacatgccgg gtttatacgc ccggtcgcgc
     1381 ggcggtgcgg tcaagaattg ccaaggatcc gttaagaagt gttaagcccc gcgtcttgac
     1441 atttcttgac tgcaaaaacc ctcgcgccga actaaaatgc cgtcttctgt ttatggaagc
     1501 gccagccgca caaactgtcg gaaacatcct cgtgatcgac gacgacgtcg agctctgcaa
     1561 actcgtctcg cgctttctcg ttcgtgaggg ctttcagatc gacgccgtca acggcggcgc
     1621 acagggaatc gaacgcgcgc tctccggcga ttacgccctc gtcgtactcg acgtgatgat
     1681 gccggaaatg agcggcttcg acgtgctgcg tcgcattcgc gccgaatccg caatgccggt
     1741 gctgatgct
//
LOCUS       DASWTX010001367         1798 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_41745, whole genome shotgun sequence.
ACCESSION   DASWTX010001367 DASWTX010000000
VERSION     DASWTX010001367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1798
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41745"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..629)
                     /locus_tag="VGD38_20800"
     CDS             complement(<1..629)
                     /locus_tag="VGD38_20800"
                     /inference="COORDINATES: protein motif:HMM:NF014068.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019172 - glyoxalase III activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase
                     domain-containing protein"
                     /protein_id="HEY0730537.1"
                     /translation="MKKKILFVVSSTGIIGPRKRKTGNLLTEVAHPYEAFKKQGYDVD
                     IFSVKGGEAPIDMVETDDPVNIAFLNDEGLTKMKNTESVESIPSLADYDAVFVPGGLA
                     PVVDMPDNATVQNILSSMYESGKVVSAVCHGPVSLINVKLSDGSYLVDGKNVTGFSIA
                     EEENYAKEDVPFELEDALKARGAKYSATAPWQAHSITDGRLVTGQNPASA"
     gene            complement(682..1398)
                     /locus_tag="VGD38_20805"
     CDS             complement(682..1398)
                     /locus_tag="VGD38_20805"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY0730538.1"
                     /translation="MSPAERNNGSLGARLQGVQHFGLTVQNMDRAFAFYTEVLGGTEI
                     MRDGDFQGERIHNTLLTDQEIEARARRVNPRTMGIPDLKGGTQRLDVRFIQFDNVVIE
                     LLQYRDAEQPAGSGASFAEPLDHMSPAFPRMMHICFHIRDDVDFNKFIADLEAEAARR
                     GMTQVRANRVITVKSEQERRAAPTDANSNGITEGRSNGWRLIYCKGSEGEQLEFVQAL
                     GPVKRVFDDAREARRKADSR"
BASE COUNT          354 a          509 c          466 g          469 t
ORIGIN      
        1 gctgaagccg ggttttgtcc agttaccaac cggccatcgg tgatgctatg tgcctgccag
       61 ggtgccgtcg cactgtattt cgcgccacgc gcctttaacg catcttccaa ctcgaaagga
      121 acatcttctt tcgcgtaatt ctcttcctcg gcgatgctga agccggtgac gttcttgccg
      181 tcgacaaggt atgagccgtc gctcaatttg acgttgatta gcgaaaccgg accatgacaa
      241 accgcgctaa cgaccttacc gctttcgtac atggaggaga gaatgttctg aacggtcgcg
      301 ttgtcgggca tatcgacgac cggagccaga ccacccggta cgaagacggc gtcgtaatct
      361 gccagcgacg gaatactttc gacgctctca gtattcttca ttttggttaa gccttcgtcg
      421 ttcagaaacg cgatgtttac cgggtcatcg gtttcaacca tgtctatcgg cgcctcgcct
      481 cctttcacgc tgaagatgtc gacgtcatag ccttgcttct tgaaggcttc gtaaggatgc
      541 gcgacttccg ttagtagatt accggtcttg cgcttacgtg gaccgataat gcccgtactc
      601 gaaacgacaa ataaaatttt ctttttcatg gctatgtttc ctttgtcctt tgcctgcttg
      661 tttcgtgctt gatcgatatc gtcaacggct gtcggctttc cggcgagctt cgcgtgcgtc
      721 gtcgaagaca cgtttcactg ggccaagcgc ctgcacgaac tccaactgct caccttcgga
      781 gcccttgcag tagatcagcc tccagccatt cgatcttcct tcggtgatgc cgttgctgtt
      841 agcgtcggtc ggcgctgccc ttctctcctg ttctgacttc accgtgatga cgcggttggc
      901 tctcacctgt gtcatccctc gtcgcgccgc ctctgcctcg agatcggcta tgaacttgtt
      961 gaaatcgacg tcgtcgcgga tgtgaaaaca aatgtgcatc attcgcggga aggcgggact
     1021 catgtgatcg agcggctcgg caaagctcgc gccgctgccg gcgggttgtt cagcgtcgcg
     1081 gtattgcagc agttcaatta cgacgttgtc gaactggatg aaccgcacgt ccaatcgttg
     1141 cgtgccgcct ttcaggtccg ggatgcccat agtccgcgga ttgactcggc gcgcacgcgc
     1201 ttcgatttcc tgatcggtga ggagagtgtt gtggatgcgc tcgccctgaa agtcgccgtc
     1261 acgcataatc tcggtcccgc ccagcacctc tgtataaaaa gcaaaggctc gatccatgtt
     1321 ttggacggtg agcccgaaat gctgcacacc ttgcaaccgc gcaccgagcg atccgttgtt
     1381 tcgttccgct ggactcatcg ttgttgtctc ccgcggtgat gccgtcgcgt ccaacgctga
     1441 gtgtgtagcc catccgccca ctagcgccgc tcccccggtt ttgagaaccg ctcggcgtgt
     1501 aaaattcgat tcttcgtttt tctgaacaag gtccacgtgc aaagtattcc tccggttccg
     1561 taacgaatat attttgccca tgctgcacga gaggcacagc acgacaaagt ggcgttttct
     1621 tttaaccctt tcgggttgga ctggaaacaa cgctaaaaag tggagcgatc tgaatgttag
     1681 aatccgccct gagtgctcac ttcagcatga gggtcaatga atcaacggtc atggaaatga
     1741 actctgccgg cacaattcac atcatgtgtg ttgacgatca tcctttaatg cataaagg
//
LOCUS       DASWTX010001368         5385 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_258354, whole genome shotgun sequence.
ACCESSION   DASWTX010001368 DASWTX010000000
VERSION     DASWTX010001368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5385
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258354"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(175..1329)
                     /locus_tag="VGD38_20810"
     CDS             complement(175..1329)
                     /locus_tag="VGD38_20810"
                     /inference="COORDINATES: protein motif:HMM:NF027479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4861 family protein"
                     /protein_id="HEY0730539.1"
                     /translation="MKIGLLVVLLLAAVPLVASAQTELTVTAVNKLNLARQSETIELT
                     VKDLATLAEKDLTKLHVRDSSGRELLAQSVDTNYDDFRKPDILIFQADFKPRETKTFT
                     VFAGAKREYKKEDFRAYGRFARERFDDFAWENDRIAHRTYGRALALWKGEPLISSAID
                     IWSKRTSKMVINDWYMVDNYHIDHGEGADVYSAGPTRGCGGSGIWASEQLFIPSNFVD
                     SRVLANGPIRVMFELVYQPFFALGVQVMPVLRVSLDGGSQLSRFEPFYRTEAGDPLVV
                     AIGLKKVKDAVKDFNAEHGRLTVWEPMEKNLGMQGLAIVANPREVDTVTEDKLNHLLL
                     LKPTRNTLPVTYWAGFAWDRAGKITSAQQWNKYVDEFSQARQSPIEVSVK"
     gene            complement(1713..4274)
                     /locus_tag="VGD38_20815"
     CDS             complement(1713..4274)
                     /locus_tag="VGD38_20815"
                     /inference="COORDINATES: protein motif:HMM:TIGR04075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004113 - 2',3'-cyclic-nucleotide
                     3'-phosphodiesterase activity [Evidence IEA];
                     GO_function: GO:0051731 - polynucleotide
                     5'-hydroxyl-kinase activity [Evidence IEA];
                     GO_process: GO:0042245 - RNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide kinase-phosphatase"
                     /protein_id="HEY0730540.1"
                     /translation="MNTITIPELALVVLVGPSGCGKSTFARKHFAPTEVLSSDFCRAL
                     VSDDENNQSATKDAFEVLHFIAAKRLAAGKLTVVDATNVQPEARKPLVALARQYHVIP
                     VTLVLNLPDRVCQDRNRERSDRNFGPHVIRQQSQQLRRSIRNLKREGFRHIHEFSSQA
                     EVDEVVIERQPLWNNRKHDHGPFDIIGDMHGCFDELHSLLTNLGYEITSSNGTAHLAH
                     PEGRKAVFLGDLVDRGPKVPEVLKLVMSMTQSGAALAVPGNHDSKLMRKLRGRDVQIT
                     HGLAESLQQLESEPPEFKEQVADFIDNLVSHYVLDDGKLVVAHAGMKEELQGRGSGKV
                     RDFALYGETTGETDEFGLPVRYNWAAEYRGKAIVVYGHTPVPEPEWLNGTICVDTGCV
                     FGGKLTALRYPEKELVSVPALQTYYQPAKPFLREEDQAPVLTAQQAYDDVLDIEDVSG
                     KRIISTRLHHTVTIREENSFAALEAMSRFAADPKWLIYLPPTMSPSETSREGDLLEHP
                     AEAFAYFRNAGVAKVVCEEKHMGSRAVVIVCRDADAARRRFGVVEEIAGICYTRTGRR
                     FFEDRVLEAEFIARLQAALERANIWEEFETDWVCLDCELMPWSAKAQELVRQQYAAVG
                     AAARASLVDVIGALDAAAQNNSEIAPLLDRYRQRQAAAAKYREAYRRYCWPVQSLDDL
                     KLAPFHLLATEGRVHTDRDHVWHMQTLKRVCEADERLLLATSNLVVDVTDPAREQIGI
                     GWWEELTDRGGEGMVVQPFDFITRSSRGLVQPAVKCRGKEYLRIIYGPEYALPENLER
                     LRARGLSTKRSLALREFALGIEGLERFVRNEPLRRVHECVFGVLALESEPVDPRL"
     gene            complement(4271..>5385)
                     /locus_tag="VGD38_20820"
     CDS             complement(4271..>5385)
                     /locus_tag="VGD38_20820"
                     /inference="COORDINATES: protein motif:HMM:TIGR04074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0042245 - RNA repair [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="3' terminal RNA ribose 2'-O-methyltransferase
                     Hen1"
                     /protein_id="HEY0730541.1"
                     /translation="SKSRQELADTKIPLQAKISVLPCRGGENFLRRLFEPLGYEVIAE
                     RHPLDEAFPAWGESSYFTVQLNGEVRLQDLLTHIYVLIPVLDNEKHYWVGDDEVEKLL
                     RHGSGWLSAHPEREEITRRYLKYRRDLARDALARLTTEEAPDVDAAEAIHDSEEEAVE
                     KSLNLNEQRLNTVVAALKSANAKRVLDLGCGEGKLLRALFADRAFEEIVGVDVSHRSL
                     QFAQERLRLERLPDRQRDRLKLMHGSLMYRDRRLSGFDAAAVIEVIEHLDQPRLAAFE
                     RVLFEFAKPDTIVLTTPNVEYNARFENLPAGKFRHKDHRFEWTRAQFQTWAYAMAGRF
                     NYTVRFLPVGPEDSALGAPTQMAVFSHEKAQEAQDA"
BASE COUNT         1051 a         1699 c         1512 g         1123 t
ORIGIN      
        1 cttccgtgcg gccgcggctc cgccttcctg ttccttgaga cactcgcgca cctcggcatc
       61 gtcggcgagc acttgtttga ataacttcgt gcgaacttcc ttcgacggct ccgcctgcaa
      121 caccaacaaa ctcaacacga ccaaaaccgc ggctctaatc attcggctcc ttcttcactt
      181 cacactgact tcaatcggcg actggcgcgc ttgcgaaaac tcgtcaacgt acttgttcca
      241 ctgttgcgcc gacgtgatct tccctgcgcg atcccacgcg aaaccggccc agtaagtaac
      301 aggcagcgta ttcctcgtcg gtttgagcag gaggagatga ttcagcttgt cttcggtgac
      361 cgtatcgacc tcgcgcggat tcgcgacgat ggcgagtccc tgcatgccga ggttcttctc
      421 catcggttcc caaaccgtca gccggccatg ttccgcgttg aagtccttca ccgcgtcttt
      481 tactttcttc aagccgatcg ctacgaccag cggatcgccg gcttcggtgc ggtaaaaagg
      541 ctcgaaccgg ctcaactgac ttcccccatc aagtgaaacg cgtaaaaccg gcatgacctg
      601 gacacccagc gcaaagaagg gctggtaaac cagctcaaac atcacgcgga tcgggccatt
      661 cgcaagcacg cgcgagtcga caaagtttga tggtatgaag agctgttcgc tggcccagat
      721 cccgctgcca ccgcagccgc gcgtcggccc cgccgagtac acatcagcgc cctcaccatg
      781 atcgatgtgg tagttgtcga ccatgtacca atcgttgatg accatcttcg acgtgcgctt
      841 cgaccagatg tcgatcgcgc tgctgatcag tggttcacct ttccataagg cgagcgctcg
      901 gccgtaagtg cggtgggcga tgcgatcgtt ctcccacgcg aagtcgtcga agcgctcgcg
      961 cgcgaatcgg ccgtaagcac gaaagtcttc tttcttgtac tcgcgcttcg cgccggcaaa
     1021 cacggtgaac gtcttcgtct cacgcggttt gaagtcggcc tggaagatga gtatgtcggg
     1081 cttgcggaag tcgtcgtaat tcgtgtcgac tgactgggcc aacaattccc ttcccgaact
     1141 gtcgcgcacg tgcagcttgg tcaggtcctt ttcggcgagc gtcgcaagat ctttaacggt
     1201 gagttcaatc gtttcgctct gccgcgcgag attgagctta ttcacggcgg tgaccgtcaa
     1261 ctcagtttga gcagatgcga ccagaggcac tgctgccagc agtaaaacaa caagcagacc
     1321 gatcttcatt ggggctcctt tagttgcctt gtttacagta agactagctg cctttgtgta
     1381 cattaagact agttgccttt gtgtacagta cgagtctttc ccctcggctt cgccgccgga
     1441 tgtgaggcgg ggcttcgccc cgccggaaga cccacaaaaa agcagttggg ctatgcccct
     1501 cgttcggcct acggcctaaa gggcgcagcc cgaaccgggg gcatagcccc cttcttttat
     1561 taaccgcgca cggcgaggcg tagcctcgcc tcacatccgg cggcggagcc gctcagaacc
     1621 gagcccctca ccggggcggc ggagccgctc agagcacaga gccgctcaga acagtgcggg
     1681 acaaaaagat tgtgcgagcc aactcaacgc ctctacagcc gcggatcaac cggctcgctt
     1741 tccaatgcca gtacaccaaa cacgcactcg tgaacgcgcc gcaggggttc attgcgaaca
     1801 aatcgttcga gtccttcgat cccgagggca aactcgcgca gcgccagcga acgcttcgtc
     1861 gacaaccccc gcgcgcgcag acgctcgagg ttctcgggta acgcgtactc tggtccatag
     1921 atgatgcgca gatactcttt gcctctgcac ttcaccgccg gctggaccaa accacgcgag
     1981 ctgcgtgtga tgaaatcgaa aggctggacg accatgcctt cgccgccgcg gtcagtcaat
     2041 tcttcccacc agccgatacc gatttgctcg cgcgcgggat cggtaacgtc cacgacgagg
     2101 ttagacgtcg cgagcagcag ccgctcatcg gcttcgcaaa ctctcttcag cgtttgcatg
     2161 tgccagacgt gatcgcgatc cgtgtggact ctaccctcgg tcgccaagag atgaaaaggc
     2221 gcgagcttga gatcgtcgag cgactgcacg ggccaacagt aacggcgata cgcttcgcga
     2281 tacttcgccg ccgcagcttg ccgttgtcga tagcgatcga gcaagggcgc gatctcggaa
     2341 ttgttctgcg ccgctgcatc caacgccccg atcacgtcga cgagcgatgc acgagccgca
     2401 gcaccaaccg ccgcgtattg ctgccgcacc aactcctgcg ccttcgccga ccacggcatc
     2461 aactcacaat ccaaacacac ccaatccgtc tcaaactctt cccaaatatt cgcgcgttcg
     2521 agcgccgcct gaagacgcgc gataaactcc gcctcgagca cgcgatcttc gaaaaatctt
     2581 cttccggtgc gcgtgtaaca gatgcccgca atctcttcga cgacgccgaa acgccttcgc
     2641 gcggcgtccg cgtcgcggca aacgatcacg accgcgcgcg atcccatgtg cttctcttcg
     2701 cacacaacct tcgccacgcc ggcattacgg aagtacgcga acgcctcggc gggatgctcg
     2761 agcaagtcgc cttcacgact cgtctccgac ggcgacatcg tcggcggcag gtagatcaac
     2821 catttcggat cggccgcaaa ccggctcatc gcttccaacg ccgcgaagct gttctcttcg
     2881 cgaatcgtga ccgtgtgatg cagacgcgtg gagatgatgc gcttgcccga aacgtcttcg
     2941 atgtcgagca cgtcgtcgta cgcctgttgc gcggtgagca cgggcgcctg atcttcttcg
     3001 cgcaggaacg gtttcgcggg ctgatagtaa gtttgcagcg cgggcacgga gaccaactct
     3061 ttctccggat atcgcaacgc cgtcagcttg ccgccgaaga cgcagcccgt gtcgacgcag
     3121 atcgtgccgt tgagccattc gggttcgggc accggcgtgt gaccgtaaac gacgatggct
     3181 ttgccgcgat actcggcggc ccagttgtaa cgaacaggca gaccaaactc gtcagtctcg
     3241 ccggtggtct cgccgtacaa cgcgaagtcc cggaccttgc ccgaaccgcg tccctgaagt
     3301 tcttccttca taccggcatg ggccacgacc agcttgccgt cgtccaagac gtaatgactc
     3361 acgaggttgt cgatgaaatc agcgacctgt tctttgaact cgggcggctc gctttcgagc
     3421 tgctgcaacg actccgcgag accgtgcgtg atctgcacgt cgcggccgcg cagtttgcgc
     3481 atcaacttcg aatcgtgatt accgggaacg gcgagtgcgg cgcccgattg agtcatgctc
     3541 atgacgagct tcaaaacttc cggcaccttt ggtccacgat cgacgagatc gccgagaaac
     3601 accgctttgc ggccttccgg gtgcgcgagg tgcgcagttc cattgctcga cgtgatctcg
     3661 taaccgaggt tggtcaacag cgaatgaagc tcgtcgaagc agccgtgcat gtcgccgatg
     3721 atgtcgaatg gtccatgatc gtgtttgcgg ttgttccaaa gcggctggcg ttcgatcacg
     3781 acttcgtcga cttccgcctg tgacgagaat tcatggatgt gacgaaaacc ctcgcgcttc
     3841 aggttgcgga tcgagcgccg cagttgctgg ctctgctggc gaatgacgtg cggaccgaag
     3901 ttgcgatcgg atctttcccg gttgcgatcc tgacaaacgc gatccggtaa gttgagcacg
     3961 agcgttacgg ggatcacgtg atactggcgc gccagcgcga ccagcggttt gcgtgcttca
     4021 ggctgcacgt tggttgcgtc cacaaccgtc agcttgcccg cggcgagtcg ctttgcagcg
     4081 atgaagtgca gcacttcaaa cgcgtctttc gtcgccgact gattgttctc gtcgtccgaa
     4141 accagcgcgc ggcagaagtc tgacgacaac acttccgtcg gtgcgaaatg cttgcgcgca
     4201 aacgtcgact tgccgcagcc ggatgggccg acgagcacta caagcgcgag ttctggaatc
     4261 gtgatcgtgt tcaagcgtct tgtgcctctt gtgccttttc gtggctgaaa actgccatct
     4321 gcgtcggcgc gccgagcgcg ctgtcttccg gtccgaccgg taaaaagcgg accgtgtaat
     4381 tgaaccggcc ggccatcgcg tacgcccagg tttgaaactg cgcgcgcgtc cattcgaagc
     4441 gatggtcctt gtgccgaaac tttccggccg gcaggttttc gaaccgcgcg ttgtattcga
     4501 cgttcggcgt cgtcagcacg atcgtgtccg gctttgcaaa ctcgaacagc acgcgctcga
     4561 aagcggcgag ccgcggctgg tccaaatgtt cgatgacttc gatcacggcg gcagcgtcga
     4621 agccggacaa gcgccggtcg cgatacatca gcgagccgtg catcagtttc aaccgatccc
     4681 gttgccgatc cggcagacgt tccaaacgca aacgctcctg cgcgaactgt agcgagcggt
     4741 gcgacacgtc aacgccgacg atctcttcga acgcacgatc cgcaaacaac gcgcgcagca
     4801 gtttgccttc gccgcagccg aggtccaaca cgcgtttcgc gttggcgctt ttcaacgcag
     4861 cgacgacggt gttgaggcgc tgttcgttca ggttcaaact tttttcgacg gcttcttctt
     4921 cgctgtcgtg aatcgcttcc gctgcgtcga cgtcgggcgc ttcttctgtt gttagccgtg
     4981 ccagcgcgtc gcgcgcgaga tcgcggcgat acttcagata gcgccgcgtg atctcttccc
     5041 gctcgggatg cgcgctcagc caaccgctgc cgtgtcgcag cagtttctcg acctcgtcat
     5101 cgccgaccca gtaatgcttc tcgttgtcga gtactgggat tagaacgtag atgtgcgtta
     5161 acaaatcctg caggcgtact tcgccgttga gttgcacggt gaagtacgag ctctcgcccc
     5221 acgcgggaaa cgcttcgtcg agcggatggc gctcggcgat gacttcataa ccgagcggct
     5281 cgaacaaacg ccgcaaaaag ttttcgccgc cgcggcacgg cagcaccgag atcttcgcct
     5341 gcaacgggat ctttgtgtca gccagctcct gacggctctt actgc
//
LOCUS       DASWTX010001369         6828 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_17514, whole genome shotgun sequence.
ACCESSION   DASWTX010001369 DASWTX010000000
VERSION     DASWTX010001369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6828)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6828)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6828
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17514"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1185)
                     /locus_tag="VGD38_20825"
     CDS             complement(<1..1185)
                     /locus_tag="VGD38_20825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730542.1"
                     /translation="MNIRNALRQWQAIGCAAVAVLLAASGTQAQTSPPTTCERTVKAD
                     VVALDQALIYNRLGVINPAGMIYALKRDVVAIDPAKGLVAGNVQLRPGKRPRPIALRM
                     NVGDCLQVNFTNLLAPDPADVNSFAANNAPATRTASAHVMGLNLVGTIASDGSNVGQN
                     PSSLVNPGSSATYTYFGQREGSHLLYSTAATTGGEGDGGSLAMGLFGSVNVQPKTAEW
                     YRSQLTAEELSLATAKNTDGTPKKTPAGQPIVDYDAVYPSGHPREGQPIMKMLDANNN
                     IVHTDLNAIITGPNKGRFPAGTYRPNPVEPDRDQPFREFTVVYHDEIKAIQAFPQFED
                     PVLSHTLYSVKDGFAINYGTGGIGAEILANRLGVGPMANCTECKYEDFFLSAWAVGDP
                     AQI"
     gene            complement(1446..2810)
                     /locus_tag="VGD38_20830"
     CDS             complement(1446..2810)
                     /locus_tag="VGD38_20830"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY0730543.1"
                     /translation="MPRSRILVIDDEPSVTDALRMVLGELGHHVDSARTGAEAKELLK
                     GSPYDLVFIDVRLPDASGIDLLALIKGDTPDTEVIVMTAHGSLDVTIEAIKRGAFYYL
                     EKPFTPHQVTTLIERALQFEAIKRENRSLKTALMRDGDDFGIIGRDAKMRQIHSIIRT
                     AAPSDASVLIEGESGTGKELIAAAFHFQSPRAELPFTRINCAAIPQELIESELFGYRK
                     GAFTGADRDKRGLIEATAGGTLLLDEIAEMPIHLQTKLLRVLQERKLRRLGDEQEISV
                     DFRLVSSTNRDTAQMIREGALRKDLYFRISTIKVKSPPLRERLDDVPLLANRFLEQYA
                     EKYKRRIREISTAAFALLMHYDWPGNVRELESVIEHAVLFATEDKLTPECLPEQLHTT
                     QPGEFRCVIPPYFSMEEIEREAIAQTLERTGGNVKRTAEILKYHRPRLYRKMKSFGLR
                     GTAE"
     gene            complement(2800..3963)
                     /locus_tag="VGD38_20835"
     CDS             complement(2800..3963)
                     /locus_tag="VGD38_20835"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0730544.1"
                     /translation="MPNVLLVDDEPSIRLTMGEFLKRAGYSVIRAADYESAAMLKAED
                     LDVAVIDINLPGKNGIQLLQKLRSVETYIPVIMITGEANLSMLPEIVRAGAYDFIPKP
                     ITKDVLLNVVARAAEKKRLTDEKRRLEREIKRYAEELETRVAERTAELVETHKRLVAQ
                     ERIAALGRAAAQVAHEVKNPLAGLLLYSLHLKSKADKLSESEMYLVDKIVETINHLNS
                     RVEQILGFARPVNLAVRSENLNRMINDVLDLLRPQLTTNNVDVQLALGPQPVYARVDD
                     SSMRGALMNLILNAIEAMPHGGTLSIAANQTDETLRLEITDTGTGIGEEEVKKILEPF
                     YTTKERGLGLGMPYAKKVIDQHGGSISISSQRGEGTTISIKLPAGQQEVNDAS"
     gene            complement(3956..5305)
                     /locus_tag="VGD38_20840"
     CDS             complement(3956..5305)
                     /locus_tag="VGD38_20840"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0730545.1"
                     /translation="MTRRFDVKVIVLTVLLTIGVIGFWEATLRPLFFAWVDMTYPGDA
                     NIELRWNIKQRVEHFLISLAVDALVVTMLLRLVHRQHRQLRESEERYRALFEQARDGI
                     GLVRLSDYSLVEANNRACEILGMRPQDCVNRDVRQLVSTNAPNANLALASNSHSSVET
                     ELTLQNANGQPLPVSVSFTPISTTGEEMMIMSLRDLSVRKKLEAEREEMQRQLYQSSK
                     LASVGELSAGVAHEINNPLNGIINFAQLLKDEERPRSEFEQQMIDGIIDEGERIAKIV
                     RGLLTFASANTHELTHVHFADSIKTSIALFGRQFEKDGIAVEIDLEPNLPLVRADGSR
                     LRQVVVNLISNAHYALKTKTADRKLFKITARRAGNNVRVEFYDNGVGIKREDLSKVFD
                     PFFTTRRETGGTGLGLSISFGIIRDFGGTINVESEEGKFTRFIVELPAVKSPEPEYA"
     gene            6002..6517
                     /locus_tag="VGD38_20845"
     CDS             6002..6517
                     /locus_tag="VGD38_20845"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HEY0730546.1"
                     /translation="MFASLSLNVYLGWKVKRGNVPSNLPVPVAPGTKVEPIKAASLDG
                     EPQTISYHDTDKPTVLYVLSPTCPWCDRNRANIAKLTERGDRFRFVGLSLSEAGLKEY
                     VDKQQLKFPVYTRVTPEAQIELGLGPTPQTIVISPEGRVLKNWAGAYNEQTRDEIEEY
                     FQIQLPGLVSN"
BASE COUNT         1338 a         1811 c         2051 g         1628 t
ORIGIN      
        1 gatctgcgcc gggtcgccca cggcccacgc cgaaagaaag aaatcttcgt atttacattc
       61 agtgcagttg gccatcgggc cgacgccgag acggttggcg agaatttccg cgccgatacc
      121 gcccgtaccg tagttgatgg cgaagccgtc tttgacgctg taaagcgtgt gcgaaagaac
      181 ggggtcttca aactgtggaa atgcctggat tgctttgatt tcgtcgtgat agacgacggt
      241 aaactcgcgg aacggctgat cgcgatcggg ctccaccgga ttcggacgat aggtgcccgc
      301 cggaaaacga cctttgtttg gaccagtgat gatcgcgttc agatcggtgt gcacgatgtt
      361 gttgttggca tcgagcatct tcatgatcgg ctggccttca cgcggatgtc ccgacggata
      421 aacagcgtcg tagtcgacga tgggctgtcc agccggggtt ttcttcggcg tgccatccgt
      481 gttcttcgcg gtggccaggg acagctcttc agcagttagc tgcgagcgat accactccgc
      541 ggttttcggc tggacgttga ctgaaccgaa gaggcccatc gcgagcgaac cgccatcgcc
      601 ttcaccgccg gttgttgcgg cagtggagta aagcaagtga ctgccttcgc gttgtccgaa
      661 gtacgtgtag gtggctgatg agccggggtt aacaagactg ctcgggttct gtccgacgtt
      721 tgaaccatcg gaggcgatcg tgccgacgag gttcaggccc atgacgtgcg ccgaggccgt
      781 gcgtgtagcc ggggcgttat ttgctgcaaa agaattaacg tccgccggat cgggagctaa
      841 aagatttgta aagttgactt ggagacagtc tcccacgttc atgcgcaagg cgatcggacg
      901 cgggcgtttg ccgggacgca gttgaacgtt gccggcaacc aaacccttcg ccggatcgat
      961 agcgaccaca tcgcgcttga gtgcgtagat catacccgcc gggttgataa cgccgagacg
     1021 gttataaatt aaggcctggt ccaatgcgac cacatcagcc ttgaccgtcc gctcgcacgt
     1081 cgttgggggt gacgtttgag cctgcgttcc cgacgcggcg agcagcacgg caactgcagc
     1141 gcagccgatc gcttgccact gacgcaaagc atttctaatg ttcatatact tttcctcgtt
     1201 ggagcttgct gtgttctgag ttgttcttga ccgcgcggac ctagcgaagc tggtggcgag
     1261 gcttcatcga tgtttcatcc attagtcgca ccttggtgaa accgcggtgc gaggaaaagg
     1321 agttggacct cgcctttgtg caaacgttat gccttgtagg agataagggg aactactact
     1381 gcgggttgag aaacgagtgt tccacggtag atcttgtgcg gtgggaatgt tccaccacgg
     1441 aacacttact cggcagtgcc gcgcaagccg aagctcttca tctttcgata gagccgcggc
     1501 cggtgatact tgagaatctc cgcagtccgt ttgacgtttc caccggttcg ttcgagtgtc
     1561 tgcgcgatgg cttcgcgttc gatctcttcc atcgagaagt acggcgggat gacacagcga
     1621 aattcgccgg gctgcgtggt gtggagttgt tcaggcaaac actcgggcgt cagcttgtct
     1681 tcagtcgcga aaagcacggc gtgttcgatg acgctttcga gctcgcgaac gttcccgggc
     1741 cagtcgtaat gcatcagcaa cgcaaacgcg gcggttgaga tctcgcgaat acgccgcttg
     1801 tacttttccg cgtactgctc gaggaaacgg ttggcgagca gcggcacatc gtcgagccgc
     1861 tcacgcaacg gcggtgattt gaccttgatc gtgctgatgc ggaaatagag atccttgcgc
     1921 agcgcgccct cgcgaatcat ctgtgcggtg tcgcggtttg tggatgagac caggcggaaa
     1981 tcgacgctga tttcctgttc gtcgccgagg cggcgcagtt ttcgttcctg caacacgcgc
     2041 agtaatttcg tttgcaggtg aatcggcatc tcggcgatct cgtcgagcag caacgtgccg
     2101 cctgcagtgg cttcgatcaa tccgcgtttg tcgcgatcgg cgccggtgaa cgcgcctttt
     2161 cgataaccga acaattcgga ttcgatcagt tcctgcggga tcgcggcgca gttgatgcgt
     2221 gtaaacggca actccgcgcg cgggctctga aaatgaaacg ccgccgcgat cagttccttt
     2281 ccggttccgg attcgccttc gatcaggact gaggcgtcag acggcgcagc agtgcggatg
     2341 atcgagtgga tttggcgcat cttagcatcg cggccgatga tgccgaagtc gtcgccgtcc
     2401 cgcatcagcg cagtcttcag gctacggttc tcgcgtttga tggcttcgaa ttgcaacgcg
     2461 cgttcgatca gcgttgtcac ctgatgcggc gtgaaaggtt tttcgaggta gtagaaagcg
     2521 ccgcgcttga tggcttcgat cgtgacgtcg agcgagccgt gcgccgtcat gacgatcact
     2581 tccgtgtcgg gcgtgtcgcc cttgatgaga gcaagcagat cgatgccgct ggcgtccggg
     2641 aggcgcacgt cgatgaagac gagatcgtac ggcgaacctt tgagcagctc cttcgcttcg
     2701 gcgcccgttc gggctgaatc tacgtgatgg cccaactcgc ccaggaccat tcgcaacgca
     2761 tccgtgacgc tcggttcgtc gtcgatcacc agaatgcggc tacgaggcat cgttgacctc
     2821 ctgttggccg gcgggcagtt tgatggagat cgttgtgccc tcgccgcgtt ggctgctgat
     2881 ggagatggag ccgccgtgct gatcgattac tttcttcgcg tacggcatac cgagaccgag
     2941 cccgcgctcc ttcgtcgtgt aaaaaggctc gaggatcttt ttcacttcct cttcaccgat
     3001 cccggtgccg gtgtcggtga tttcgagtcg cagtgtttca tcagtttggt tggcggcgat
     3061 gctcagagta ccgccatgtg gcatcgcttc gatagcgttt aatatgagat tcatcagggc
     3121 tccgcgcatg gaggagtcgt cgacgcgagc gtaaacgggc tgcgggccca gcgcgagttg
     3181 gacgtcgacg ttgtttgtag ttaattgtgg ccgtagcaga tcgagcacat cgttaatcat
     3241 ccggtttaga ttttcggaac gcacggcgag attgaccggg cgggcgaagc cgaggatctg
     3301 ctcgacccgg ctgttgaggt gattgatggt ctcgacgatc ttgtcgacga gatacatctc
     3361 gctttccgaa agcttgtcgg ccttgctttt gaggtgtagc gagtaaagaa gcagaccggc
     3421 gagcgggttc tttacttcgt gtgcgacttg cgcggcggcg cgtccgagtg cggcgatgcg
     3481 ttcctgcgcg acgaggcgtt tgtgagtttc gacgagttcg gcggtgcgct cggccacacg
     3541 ggtttcgagt tcttcagcgt aacgtttgat ctcgcgctca agtcttctct tctcgtccgt
     3601 cagacgcttc ttctccgccg cgcgcgcgac gacgttgagc agcacgtctt tggtgatcgg
     3661 tttggggatg aaatcgtatg cgccggcgcg cacgatctcc ggcagcatgg aaaggttcgc
     3721 ttcgcccgtg atcatgatga cgggaatgta cgtttcgacg ctgcgcagtt tttgcaacaa
     3781 ctggatgccg ttcttgccgg gaagattgat gtcgatcacg gcgacgtcga ggtcctcagc
     3841 tttgagcatc gccgcgcttt cgtaatccgc agcccttatc acggagtaac cagcgcgttt
     3901 caggaactcg cccattgtga gacggatgct gggctcgtcg tcgaccagta gcacgttagg
     3961 catattcggg ctccggcgac ttgaccgcgg gtagttcgac gatgaagcgc gtgaattttc
     4021 cttcttcgct ttcgacgtta atcgtgccgc caaaatcgcg aatgataccg aagctgatgc
     4081 tcaggccgag gccggtgccg cctgtttcgc ggcgcgtggt gaagaacgga tcgaagactt
     4141 tgctcaagtc ttcgcgtttg atcccgacgc cgttgtcgta aaactccacg cgcacgttgt
     4201 tgccggcgcg gcgcgcggtg attttgaaca gtttgcggtc agccgtcttc gttttcaggg
     4261 cgtagtgcgc gttgctgatc aggttgacga cgacttgtcg cagtcgtgag ccgtcggcgc
     4321 ggactaacgg aaggtttggt tccaagtcga tctcgaccgc gatgccgtct ttttcaaact
     4381 ggcggccaaa taaagcgatc gacgttttga ttgagtctgc gaagtgtacg tgtgtgagct
     4441 cgtgcgtgtt tgcggatgcg aaagtcagca ggccgcgtac gattttggcg atgcgttcac
     4501 cttcgtcgat gatgccgtcg atcatctgtt gctcgaattc ggagcgcggg cgttcttcgt
     4561 ctttgagtag ttgggcgaaa ttgatgatgc cgttgagcgg gttgttgatt tcatgtgcaa
     4621 cgcccgcgga gagttcgccg acggacgcca gttttgacga ctggtacaac tggcgctgca
     4681 tttcttcgcg ctcggcttcg agtttcttgc gcacggagag atcgcggaga gacatgatca
     4741 tcatctcctc gcccgtggtc gagatcggag tgaacgaaac agagacgggc agcggctggc
     4801 cgtttgcgtt ttgaagcgtc agctcggttt cgactgaaga atggctgttg gacgcgagcg
     4861 cgaggtttgc gtttggagcg ttcgtgctaa caagctggcg gacgtcgcgg ttgacgcaat
     4921 cctgcggccg cataccgaga atttcgcagg cgcggttgtt ggcctcgacg aggctatagt
     4981 ccgagagacg gacgaggccg ataccgtctc gcgcctgttc gaacagggcg cggtagcgtt
     5041 cttcactttc tcgtaactga cggtgttgcc ggtgcacgag gcgcagcagc atcgtcacga
     5101 cgagcgcgtc gacggctaaa gagatcagga agtgttcgac ccgctgtttt atgttccagc
     5161 gcagctcgat gttcgcgtcg ccggggtagg tcatgtcgac ccacgcgaag aaaaggggtc
     5221 ttagcgtggc ttcccaaaac ccgatcacgc cgatagtcag cagaaccgtg aggacgatta
     5281 cctttacatc aaaccttcta gtcatcagga cctcgcgtca atggcaaact ccggcaccgc
     5341 cctgggggag cgcatttact taagcgcggt gaacatggtg ggagtcagca gtatatcttg
     5401 cgagaggcgc aatgtggaat tatgccgcaa tttgcgcgcg cgcaggttgc cggaggtttg
     5461 ttaaaaagtt gagatttcga ctcaagcctg ggggcggcga aggcgcaagc gcgtgattcg
     5521 aaattaacca tttacttcgc gctcaccttc gggtatatat ccccccatcg cccaccgccc
     5581 catcagttgt tttcaaggag cctcattatg cgaatactca agccaatcac actggtacgt
     5641 ttgatcgctg tcgctgcttg ccttacggca gccgttgtct attcatcatt tacgccccaa
     5701 ccggtctatg catgcggcga aggcggttgt tgctattgcc ttgctggagg gcagtattca
     5761 cccggcgcgt gtaatggggg atctgaatgc gtgtgtaata cgcaaccatc ttgtagctgt
     5821 tcctggatcc caagcgaccg gtgccggaac gtccccgtgc tcgactgaaa attcgtttcg
     5881 cttgcgctaa gtcgattcac aatttgccga gaacggcgag aaccgacgag tgtatatcgt
     5941 ttctagtccg cgaaatatta ttgtgcgtgg aaggcgtcca gattttttcc tgctgctact
     6001 cttgtttgca tcactgtctc tgaatgttta tctgggctgg aaagtgaagc gaggtaatgt
     6061 cccttcaaat cttcctgttc ccgtcgctcc cggtaccaag gtcgagccta taaaggcagc
     6121 aagtcttgac ggagaaccgc aaaccatttc gtatcatgac acagacaaac caacagtgct
     6181 gtatgtattg tcgccaactt gcccctggtg cgatcgcaac cgcgcaaaca tcgcgaagct
     6241 caccgaacgg ggagatcgtt ttcgatttgt tggactatcg ctctcagagg ctggtctgaa
     6301 ggagtatgtg gacaaacaac aactcaagtt tccggtttat acgcgcgtga ccccggaagc
     6361 tcagatcgaa ttgggtctcg gtccaacgcc acaaaccatc gtgatctcac ctgaaggtcg
     6421 agtcctgaag aattgggctg gagcctacaa cgagcaaacg cgtgatgaaa tcgaagaata
     6481 cttccaaatc cagcttccgg gcttagtgtc aaactgacaa acgatctcag caccttatga
     6541 gatcgtcact aggctcctga ctgctgcgcc tgtgaatgac gacgctcagc gctcacgctg
     6601 ccgaaggcac gtgcacataa aaagccccat taggttcaaa ggccttactc gtaattgctg
     6661 agaagtgcgc cgttttgcgt tgagctacac cgctactgat gcagaccgag cgttctggta
     6721 agctgatgtc cgtggcgttc gagttctcgg gccgggatta aacggaaaac tatgctgaag
     6781 actattgtct tactaaccat ctcaaacatc ttcatgacgc tcgcgtgg
//
LOCUS       DASWTX010001370         1611 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_17519, whole genome shotgun sequence.
ACCESSION   DASWTX010001370 DASWTX010000000
VERSION     DASWTX010001370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1611
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17519"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1599)
                     /locus_tag="VGD38_20850"
     CDS             complement(<1..1599)
                     /locus_tag="VGD38_20850"
                     /inference="COORDINATES: protein motif:HMM:TIGR01733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-ribosomal peptide synthetase"
                     /protein_id="HEY0730547.1"
                     /translation="MTEGTVVSIFLTDTIGIISSILATLKAGGVFCPLDPTFPEKRLQ
                     VMAAGAAPKICITHSQFHEKWQRVAAELGSAPEVLFIDNLPETGGYRRRVHPSNPDAP
                     CSIYFTSGSTGKPKAILGRLKGIDHFIRWEIEAVNAAPGTRVSQLASPSFDGFLKDAF
                     VPLCSGGVVCAPEHRDIILDSNRLIDWLDVEQVEVLHCVPSVFRALMTQGLNPQYFEA
                     MKCVVLTGEPLYPADVKRWMEIFGERIKLLNIYGTTETTLSKFAYEVKPEDVDRPSIP
                     VGKPIKGSAMIVLDQYGKPCGIGDVGEIHIRTPYRSFGYYGEPELTKQVFIQNPFSND
                     PNDIVHKTGDYGRLLVTGDLEHLGRRDQQVQVRGVRVELGEIENLLRAHHGVADVAVI
                     DREDADGNKFLVVYVMTTNGTSTTALREYLAQQLPQTMLPSAFVELDQLPRTLNGKID
                     RKALPALEAIQAARESGDSAPRGPIEEIVAGIWCEVLKVPAVGREDNFFNLGGHSLLV
                     TQAILRVRDILKVEMPIRSLFESPT"
BASE COUNT          344 a          480 c          442 g          345 t
ORIGIN      
        1 agttggcgac tcaaagagac tgcggatcgg catctccacc ttcaggatgt cgcgcacccg
       61 caggatcgcc tgcgtcacca gcagcgaatg accgccgaga ttgaagaagt tgtcctcgcg
      121 gccgacagcc ggaaccttca acacttcaca ccagataccg gcgacaattt cttcaatcgg
      181 cccgcgcggc gccgagtctc cactttcgcg agctgcctgg atcgcttcca gcgccggcag
      241 tgctttgcga tcgatctttc cgttgagcgt tcgcggcagt tgatcgagct ctacaaacgc
      301 tgaaggcagc atcgtctgcg gtaactgttg cgccaggtac tcgcgcagcg cagtggtgct
      361 cgtgccgttg gtcgtcatca cgtagacgac cagaaactta ttcccgtccg cgtcctcgcg
      421 atcgattacg gccacgtcgg caacgccgtg atgcgcgcgc agcaggttct cgatctcacc
      481 cagttcgact cgtacgccac ggacttgaac ctgttgatcg cggcgaccga gatgttcgag
      541 atcgccggtc acaagcagcc ggccatagtc tccggtcttg tgaacgatgt cgtttggatc
      601 attgctaaac ggattctgaa tgaagacttg tttcgtgagt tccggttcgc cgtagtagcc
      661 gaatgagcga tagggcgttc tgatgtggat ctcgccgacg tcgccgatac cgcacggttt
      721 gccatactgg tccaacacga tcatggccga tcccttgatc ggcttaccga ccggaatcga
      781 gggacggtcc acgtcttcgg gtttcacttc gtaagcaaat ttcgaaaggg tcgtctcggt
      841 cgtgccgtag atgttcagca gtttgatccg ttccccgaag atttccatcc agcgtttcac
      901 atccgccgga tacaagggct cacccgtcag caccacacac ttcatggctt cgaagtattg
      961 cggattcaac ccctgcgtca tcagcgcacg aaataccgac ggcacgcaat gcagcacttc
     1021 cacctgctcg acgtcgagcc agtcgatcaa cctgttcgag tcaagaatta tgtcccggtg
     1081 ttcgggcgcg cagacgacac cacccgagca caaggggaca aaggcgtcct tcagaaaccc
     1141 gtcaaatgaa ggagaagcca attgactcac ccttgtgccc ggagccgcgt tcactgcctc
     1201 aatttcccaa cgaatgaaat gatcgatgcc tttcaaccgt ccaagaatcg ctttcggctt
     1261 gccggtggat ccggaggtga agtagatcga acaaggtgcg tcaggattcg aggggtgaac
     1321 cctgcgacga tagccgccgg tctctggcaa gttgtcgatg aagagaactt cgggtgctga
     1381 acccagttcc gcggcgactc gttgccattt ctcgtgaaac tgcgaatgcg tgatgcagat
     1441 cttcggcgcc gcgcccgcag ccatgacctg caagcgtttc tcgggaaacg tcggatccaa
     1501 cggacaaaaa acgccgccgg ctttcagtgt cgccaggatc gaagaaatga tgccgatcgt
     1561 gtcggtaaga aagatgctga cgacagttcc ttccgtcact ccgcgttgcg a
//
LOCUS       DASWTX010001371         1846 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_430042, whole genome shotgun sequence.
ACCESSION   DASWTX010001371 DASWTX010000000
VERSION     DASWTX010001371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1846)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1846)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1846
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_430042"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..586)
                     /locus_tag="VGD38_20855"
     CDS             complement(<1..586)
                     /locus_tag="VGD38_20855"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0730548.1"
                     /translation="MKLSGGSIFENVRMGLDTLWQHKLRSFLTVLGVVIGTMTVIVIA
                     AFVSGIDQRVAKEIESFGTNSIYIYRFDPGFNFNPSAEERMRKPLSYEDAVAIGTDCP
                     SVAYSAAFMSPVDFFGGPFTERVFVRHRDIEMKNAAVQGASPSYFKMGVTNLAEGRYF
                     TDEENALHANVIVIGNDVANTLFPYSEALDQTVSI"
     gene            complement(592..>1846)
                     /locus_tag="VGD38_20860"
     CDS             complement(592..>1846)
                     /locus_tag="VGD38_20860"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0730549.1"
                     /translation="SWTTEAFPVMPFLEALKLAVSAILAHKLRSFLTLLGVIFGVATV
                     IVVVSLIEGFNAYVDEKIADIGTNAFAVQKYSLEDFASIEALNAARRRNKDITLEDID
                     ALRARGGAIRDVAAKAGGIGDVKYGSTNLFRVQINAATPNIADIERIEAQAGRYFNKS
                     EDDTRRAVCFIGADVAEKLFPTADPLGKVIRVDGKPYEVIGVGKSLGSVFGQPRDMYV
                     SVPLGTFLATYGSRRSLGVSVTSHGPESYQDAIDEARVVMRTRRRLPPSEKDNFGIIT
                     PKAINELRDKIFGTIQIAAVGVTSISLVVGGIVIMNIMLVSVTERTKEIGIRKSIGAR
                     RSDIVKQFLAESTMLSLCGGAIGISIAYLLAKMVAVLTPVPTALPLLAVTFALLVSAS
                     VGLVSGVYPAWRAASLDPIEALRAD"
BASE COUNT          427 a          574 c          484 g          361 t
ORIGIN      
        1 tgatcgacac agtctgatcg agtgcttcgc tgtacggaaa caacgtgttc gcgacgtcgt
       61 tgccgatcac gatcacgttc gcgtgcagcg cgttttcctc gtcagtgaaa taacgtcctt
      121 cggcaaggtt cgtgacgccc atcttgaagt acgacggcga cgcgccctgc actgcggcgt
      181 tcttcatttc gatgtcgcga tggcgcacga aaacgcgttc ggtaaacgga ccaccgaaga
      241 aatcaactgg cgacatgaat gccgccgagt aagcaacaga cggacaatcg gtcccaatcg
      301 cgaccgcatc ttcgtaactc aacggcttgc gcatgcgctc ttccgccgac gggttgaagt
      361 tgaaacccgg atcgaaacgg tagatgtaga tcgaattggt gccaaacgat tcgatctctt
      421 tcgcgacgcg ctgatcgata cccgaaacaa acgccgcgat cacgatcacg gtcatcgtcc
      481 caatcacgac gccgagcacc gtgagaaacg aacgcagttt gtgctgccac agggtgtcga
      541 gccccatgcg cacgttttcg aaaatgctgc cgccggaaag tttcatctga attagtcggc
      601 cctaagcgcc tcgatcggat ccaggctcgc agcgcgccac gcgggataaa ctcccgaaac
      661 caaacccaca ctcgcggaca ccaacaaagc aaacgtcacc gcgagcaacg gcaacgccgt
      721 cggcacaggc gtcaacaccg ccaccatttt cgccaacagg taagcgatcg agattccgat
      781 cgcgccacca caaagcgaaa gcatcgtcga ttcagccaga aactgtttca cgatatcgct
      841 gcgccgcgcg ccaatgctct tgcgaatacc gatctctttc gtgcgttcgg tcacgctcac
      901 gagcatgatg ttcatgatca cgatcccgcc cacgacgagc gagatcgacg tcacgccaac
      961 agccgcgatc tgaatcgtgc cgaagatctt gtcgcgcagt tcgttgatgg ctttcggcgt
     1021 gatgatgccg aagttgtctt tctcggacgg cgggagcctt cgccgcgtac gcatcacgac
     1081 gcgcgcttcg tcgatcgcgt cctggtaact ctccggtcca tgcgacgtca cgctgacacc
     1141 caaactccgg cgcgaaccgt acgtcgcgag aaacgttccc aacggcacgg acacgtacat
     1201 atctcgcggc tggccaaaaa ccgatccgag cgacttgccc acgccgatca cttcataagg
     1261 tttaccgtca acacgaatga ctttcccgag cggatcggcg gtgggaaaca gtttttccgc
     1321 cacgtcagcg ccgataaaac agaccgcgcg ccgcgtatcg tcttcgctct tattgaagta
     1381 gcgtcccgcc tgcgcctcga tacgctcgat gtcggcaatg ttcggcgtcg ctgcgttgat
     1441 ctgaacgcga aataaattcg tcgagccata cttcacatcg ccgattccac ctgctttggc
     1501 ggcgacgtca cgaatggcgc caccgcgcgc acgcaacgcg tcgatgtctt cgagcgtgat
     1561 gtctttgttg cggcggcgcg cggcattcaa cgcctcgatg ctggcgaagt cttccaaaga
     1621 atacttctgc acggcaaaag cgttggtccc aatgtccgcg atcttctcgt cgacgtacgc
     1681 attgaaaccc tcgatcagag acacgaccac gatcacggtc gcgacaccaa agatcacgcc
     1741 gagcaacgtc aaaaacgatc tgagcttatg ggcgaggatc gccgagaccg ctagtttgag
     1801 ggcttcaaga aacggcataa cagggaacgc ttcggttgtc caagaa
//
LOCUS       DASWTX010001372         1744 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_41943, whole genome shotgun sequence.
ACCESSION   DASWTX010001372 DASWTX010000000
VERSION     DASWTX010001372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41943"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1744
                     /gene="malQ"
                     /locus_tag="VGD38_20865"
     CDS             <1..>1744
                     /gene="malQ"
                     /locus_tag="VGD38_20865"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004134 - 4-alpha-glucanotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0005980 - glycogen catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HEY0730550.1"
                     /translation="ANERGIKIVGDLPIFVAQDSADVWTNPDQFKLDKNGRPLVVAGV
                     PPDYFSSTGQLWGNPLYNWERMEADGFAWWIERVRATLKVVDIARVDHFRGFAACWEI
                     PGGDKTAERGQWVEAPGRELFTAIRKTLGQLPIIAEDLGVITPDVVALRDDFGFPGMR
                     ILQFGFGGDAKNIDLPHNYIANVVAYTGTHDNDTTVGWFESVAGEGSTRTEEQIERER
                     QFCLDYLNSDGHEIHWDFIRAVFASVANTAIVPLQDVLGLGTEARMNLPNSTEGNWSW
                     RYRSGSLTDEIAARLKKLTGLYGRLLALLVLFICLQFLPLLASAQVFAELKVDPPSWW
                     TGSSHNPVRLLIRGTNLDARSVRISGPGVRIVGAPKINERGTYAFVDVAISPTARPGQ
                     RTITIGPSRGSFEILPRLNRQGRFQGFSPSDVLYLIMIDRFNDGDRSNNDPPQSRGIY
                     DPKNKFYYHGGDLQGVIDRLPYLKDLGVTAIWLTPWYDNYDRLNQIELKEGKPSTGFH
                     GYNPQDFYGVEEHFGSLIKLKELVDKAHQSGIKIIQDQVVNHTGPYHPWVDDPPTPTW
                     FNGTKSNHLKNVFQT"
BASE COUNT          368 a          518 c          504 g          354 t
ORIGIN      
        1 atgccaacga aaggggcatc aagattgtcg gcgacctgcc gatcttcgtg gcccaggact
       61 cggccgacgt ttggaccaat cccgatcagt tcaagctaga caagaacggg cgcccgctcg
      121 tcgtggctgg cgtgccgccc gactacttca gcagcacggg ccagctttgg ggcaatccgc
      181 tctacaactg ggagcgcatg gaggcagacg gttttgcgtg gtggatcgag cgcgtgcgcg
      241 cgacgctgaa ggtcgtggac atcgcgcgcg tggaccactt ccgcggtttc gcggcgtgct
      301 gggagattcc cggcggcgat aagacggctg agcgcgggca gtgggtggaa gcgccgggcc
      361 gggaactgtt cactgcgata cgaaagacgt tgggccagtt gccgatcatt gccgaagacc
      421 tcggcgtgat cacgcctgat gttgttgcgt tgcgcgatga ttttggtttt cccggcatgc
      481 gtattcttca gtttggattt ggcggcgatg caaagaacat cgatctgccg cacaactaca
      541 tcgccaacgt cgtcgcttac accggaacgc acgacaacga cacgacggtg ggttggttcg
      601 agagtgtcgc aggcgagggc tcgacgcgca ccgaggagca gatcgaacgc gagcgccagt
      661 tctgtctgga ctatctaaac agcgatgggc acgagattca ctgggacttc atccgcgcgg
      721 tgtttgcgtc ggtggcgaac acggcgatcg tgcccttgca ggatgtgctc ggattgggca
      781 cggaggcgag gatgaatctt ccgaacagca ctgagggcaa ctggtcctgg cggtatcgct
      841 ccggatccct tacggatgaa atcgcggcgc gcctaaagaa actcaccggg ctctacggcc
      901 ggttgttggc tcttttagtt cttttcatct gccttcaatt cctccccctc ttggcctcgg
      961 cccaggtctt cgcagaatta aaagtcgacc ctccaagctg gtggactggc agttcacaca
     1021 accctgtgcg cttgttaatt cgtggcacaa acctcgacgc cagatctgtg cgaatcagtg
     1081 gcccgggcgt gcgcatcgtc ggcgcaccaa agatcaacga acgtggaact tacgcattcg
     1141 tcgacgtggc gatctcgcca accgcgcggc ccggccaacg cacgatcaca atcggcccat
     1201 cgcgcggttc gttcgagatc cttccacgac tcaatcgcca gggccgtttc caaggcttct
     1261 cgccctccga cgtgctctac ctgatcatga tcgatcgttt caacgacggc gatcgctcaa
     1321 acaacgatcc gccgcagtcg cgcggcatct acgacccaaa gaacaagttc tactaccacg
     1381 gcggcgatct tcagggcgtg atcgatcgcc tgccttattt aaaggacctc ggcgtcaccg
     1441 cgatctggtt gacgccctgg tacgacaact acgatcgcct gaaccagatc gagttgaagg
     1501 aaggcaagcc gagcactggc tttcacggtt acaacccgca ggatttttac ggcgtcgaag
     1561 aacacttcgg gtctttaatc aaactcaaag agctcgttga taaagcgcat caatccggga
     1621 tcaaaatcat ccaggaccag gtcgtcaatc acaccggccc atatcatccg tgggttgacg
     1681 atccgcccac gccgacgtgg ttcaacggca ccaagtcaaa ccacctgaag aacgtctttc
     1741 aaac
//
LOCUS       DASWTX010001373         1598 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_191093, whole genome shotgun sequence.
ACCESSION   DASWTX010001373 DASWTX010000000
VERSION     DASWTX010001373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191093"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..805)
                     /locus_tag="VGD38_20870"
     CDS             complement(<1..805)
                     /locus_tag="VGD38_20870"
                     /inference="COORDINATES: protein motif:HMM:NF024931.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium chelatase domain-containing protein"
                     /protein_id="HEY0730551.1"
                     /translation="MLFRTLSAAVYGIDADLVDIEVDLTHSRGETEQSSSVTIVGLPD
                     AAVRESRERIRAAMQNCGYFFPLQKTTINLAPADVRKEGASFDLPIALGILGANGDLA
                     EHYSLIHILCVGELSLDGRVRAIKGALPITILAREASIRHVVLPEESAKEAAVVSGVN
                     VYPVADLRSAVNLIADLRSETPPTPLRVEPSALLERTEQYAIDFKEVRGQISAKRALE
                     IASAGGHNILLIGPPGSGKTMLAKRLPTIMPPLEFEAALELTKIHSVAGL"
     gene            complement(888..>1598)
                     /locus_tag="VGD38_20875"
     CDS             complement(888..>1598)
                     /locus_tag="VGD38_20875"
                     /inference="COORDINATES: protein motif:HMM:NF013630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEY0730552.1"
                     /translation="IYPYIAQETRNYVPNILAVILIAKNPEKYGFKGIKSDAPLAYDV
                     VQVPTATSLQLVADATDTSVDHIRSLNPELKRDVTPRGDTYNVRVPPGRAKQFAALLQ
                     RISPDRRETARIISVAPGEDLQNVASRTGVSIAQLQAMNSGVDLKSTTKLVVPNSSVK
                     LTRWVRAASPAAENAAAPSLNKVRARKGDTIASIAAARNLDANDVARLNGIPVDTELR
                     AGQEVKIPGTAAAPSRRR"
BASE COUNT          339 a          446 c          472 g          341 t
ORIGIN      
        1 tcaaaccagc cactgaatga atctttgtga gctcgagcgc ggcttcaaat tccaatggcg
       61 gcatgatcgt cgggaggcgt ttagccagca ttgtcttgcc ggatccgggg ggtccaatga
      121 ggagtatgtt gtgccctccg gcactcgcga tttcgagcgc gcgcttggcg gaaatctgcc
      181 cgcgcacttc tttgaaatca atggcgtatt gttccgttcg ttcgagaagc gcggacggtt
      241 caactcgcaa aggagttggc ggtgtttcgg aacgcaagtc agcgatcaaa tttaccgcgc
      301 tgcgcagatc cgcgacggga tacacgttta cgccggaaac caccgctgct tccttcgcgc
      361 tctcctcggg caggaccacg tggcgaatcg aggcttcacg cgcgaggatc gttatcggca
      421 gcgcgccttt gatcgcgcgc acgcggccat cgagcgagag ctcgcctacg cacagaatgt
      481 gaatcaggct gtaatgctcg gcgagatcgc cgttagcgcc gaggatgcca agcgctatcg
      541 gtagatcaaa actcgcgcct tctttgcgca cgtcggcagg cgcgagattg atcgtggtct
      601 tttgcaacgg aaagaagtag ccgcagtttt gcattgcggc gcggatgcgt tcgcgcgact
      661 cgcgcacggc ggcgtcaggc agtccgacga tcgttactga agacgattgc tcggtttcgc
      721 cacgactgtg agttagatcg acttcgatgt cgacgagatc tgcgtctatt ccatagacgg
      781 cagcagagag agttctgaag agcatgtgag gtagctccta aacaaagcat tagtaccgta
      841 aggtgagctt acggtactgc caaaagggtt aaaaactact gcgacgacta cctgcgacgt
      901 gagggcgcag cagccgtacc cggaatcttc acttcctgac cggcacgaag ttcagtatca
      961 accggaattc cattcaagcg cgcaacgtcg ttcgcgtcga gattgcgagc ggctgcaatg
     1021 ctggcgatcg tgtcgccctt gcgcgcgcga accttgttca acgaaggcgc tgcggcgttt
     1081 tcagcggccg gcgaagcggc gcgcacccaa cgggtgagtt tcacgctgct gtttggcaca
     1141 accagcttgg tcgtcgattt cagatcgaca ccgctgttca tcgcctgcaa ctgcgcgatg
     1201 ctgacaccag tgcgactcgc aacgttctgc agatcttcac ccggcgccac ggaaatgatg
     1261 cgagccgttt cgcgtctatc aggtgaaatg cgctggagca gcgcagcaaa ctgcttggcg
     1321 cggcccggcg gaacgcgcac gttgtaagta tcgccacgcg gcgttacatc acgcttcaac
     1381 tccggattca gggaacgaat atgatcgaca ctcgtgtcag tggcatcggc cacgagctga
     1441 agactcgttg cggtcggcac ctgcaccaca tcataagcaa gcggagcatc cgacttgatg
     1501 cccttgaaac catacttctc ggggttcttg gcaatcagga tcaccgcgag aatgttaggc
     1561 acgtaattac gtgtttcctg cgcgatgtat ggatagat
//
LOCUS       DASWTX010001374         1950 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_212788, whole genome shotgun sequence.
ACCESSION   DASWTX010001374 DASWTX010000000
VERSION     DASWTX010001374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1950)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1950)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1950
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212788"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1051
                     /locus_tag="VGD38_20880"
     CDS             <1..1051
                     /locus_tag="VGD38_20880"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0730553.1"
                     /translation="AGRSLVVTAPGRTLLAVDGRGVGESYETLLADHAELSQMVGDCL
                     ERGTLYRRSEVETRTQDGQLRRLGATIAPIDLPPTRPGSAGGSPATRGALCLLTDITE
                     VTELREQVALKNNLESLGEMSAGLAHEFKNAIATLQGYAQLLQSLELNQNAQVAAASL
                     LNEVRGLATMVTAFLDFARPQPLHLEDVDLQDLIKDCAVELQPLFEELRVELLVEEKV
                     SLKVRADERMLRLALQNLIRNAAEAIPDKAVARKVVVRIAREPQSALIEVRDTGTGIP
                     PEQLQKIFIPFFTTKPKGHGVGLALTHRIITEHGGTLTAANAAGGGAVFTIKIPSENT
                     HASGDRPTVQYPAEQ"
     gene            complement(981..>1950)
                     /locus_tag="VGD38_20885"
     CDS             complement(981..>1950)
                     /locus_tag="VGD38_20885"
                     /EC_number="4.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF044283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="UbiD family decarboxylase domain-containing
                     protein"
                     /protein_id="HEY0730554.1"
                     /translation="YAPPHERRPEGPFGDHYGYYSLRHDYPVFHCDAVIHRRDAIYPA
                     TVVGKPRQEDFFIGDYLQQLLSPLFPLVMPSVRDLWSYGETGFHSLAAAVVRERYGRE
                     ALVSGFRILGEGQLSLTKFLLLTDTPQDLKDFPRLLEHVLERFRPETDLFVFSNVSMD
                     TLDYTSGKVNEGSKAIMLGLGDAIRTLPREFKGSLPSYMSRAEVFCGGCLVLQGASFA
                     EDKTLAARVAADEAFREWPLVVLHDKADVARSSANFLWATWTRFEPASDIYAAETTVQ
                     RHHLVYKAPIVIDARTKPGFPDELIVRPDIAQLVDRRWREYFPKGF"
BASE COUNT          448 a          557 c          562 g          383 t
ORIGIN      
        1 ggcggggcgt tcgctggtcg tgactgcgcc gggacgaacg ctgctcgctg tcgatggacg
       61 tggagtcggc gagtcgtatg aaacgttgct ggcggatcat gctgagctgt cgcagatggt
      121 tggtgactgt cttgagcgag gaacgcttta tcggcgttcg gaagttgaaa cgcgaaccca
      181 ggatgggcag ttgcgcaggc ttggcgccac catagctcca atcgacctgc cgccaacccg
      241 ccctgggagc gcgggcggct cgcccgcaac ccgcggcgcg ttgtgtttgt tgacggacat
      301 cactgaagtc acagagctgc gcgaacaagt ggcgctcaag aacaatctcg aaagcttggg
      361 tgagatgtcc gcgggtttgg cgcacgagtt caagaacgcg atcgcgacgc tacagggtta
      421 tgcgcaacta ttgcagagtc tggaattgaa ccagaacgcg caggttgcgg cggcgtcgtt
      481 gctaaacgag gtgcgtgggt tggcgacgat ggttacggcg ttcctggatt ttgcgcggcc
      541 gcaaccgtta cacctcgagg acgtggacct tcaggattta attaaggatt gcgccgttga
      601 gttgcagccg ttgtttgagg aactaagagt tgaattgtta gttgaagaga aagtttcgtt
      661 aaaggtccgc gctgatgaac ggatgctccg actggcgttg caaaacctga tacgcaacgc
      721 cgcggaggcg attcctgaca aagcagtcgc acgcaaggtc gttgttcgca tcgcacgaga
      781 gcctcaatca gctttaatcg aagttcgcga caccggaaca ggcatcccac cggagcaact
      841 gcaaaagatc ttcattccct tcttcaccac gaagcccaaa ggccacggcg tgggactcgc
      901 gttaacacac cggatcatta ccgagcacgg cggaacactg acggcagcaa atgcagccgg
      961 cgggggcgcg gtgtttacga tcaaaatccc ttcggaaaat actcacgcca gcggcgatcg
     1021 accaactgtg caatatccgg ccgaacaata agctcgtcgg gaaagcccgg tttcgtgcgc
     1081 gcgtcgatca cgatcggcgc tttgtagacc aggtgatggc gttgcactgt cgtttcggct
     1141 gcgtagatat cggacgcggg ttcgaagcgc gtccatgtgg cccataaaaa attcgccgaa
     1201 gatctggcta catctgcctt gtcatgtaaa accaccaacg gccactcgcg aaaggcttcg
     1261 tcggcagcca ctcgtgccgc taacgttttg tcttctgcga aagacgcacc ctgcaatacc
     1321 aagcacccgc cacaaaagac ctccgcccgc gacatataac tcgggagcga tcctttgaac
     1381 tcgcgcggca gcgtgcgaat cgcatcgccc agcccgagca tgatcgcctt gctgccttcg
     1441 ttcactttcc cgctcgtgta atcgagcgta tccatcgaga cgtttgaaaa cacaaacaga
     1501 tccgtttcgg gccggaaacg ttccagcacg tgctccagca aacgcggaaa atctttcaaa
     1561 tcctgcggcg tgtcggtgag tagcagaaac ttcgtcagcg atagctggcc ttcgccgaga
     1621 atgcgaaaac cggaaaccag cgcctcgcgc ccatatcgct cacgcacgac cgctgccgcc
     1681 aacgaatgaa atcccgtctc gccgtagctc cagagatcgc gcaccgacgg catcacgagt
     1741 ggaaacaacg gcgacaacaa ctgctgcagg taatcgccga tgaaaaaatc ttcctgccgc
     1801 ggcttgccca ctaccgtcgc cggatagatc gcatcgcgac gatgaatcac agcgtcgcag
     1861 tgaaacaccg gataatcgtg acgcagcgag tagtaaccgt agtgatctcc aaacggccct
     1921 tcaggccttc gttcgtgcgg tggtgcataa
//
LOCUS       DASWTX010001375         2065 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_147622, whole genome shotgun sequence.
ACCESSION   DASWTX010001375 DASWTX010000000
VERSION     DASWTX010001375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2065
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147622"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..501)
                     /locus_tag="VGD38_20890"
     CDS             complement(<1..501)
                     /locus_tag="VGD38_20890"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0730555.1"
                     /translation="MPRILIADDQADVLAALSLLLKGERFQIESASSPAGVLRAIDSQ
                     EFDVVLIDLNYARDTTSGSEGLDLLSKLRAVDPSLPVVVMTAWGSVDLAVEAMRRGAR
                     DFIQKPWDNARLLAVLRTQVELAQALRRGKKLEAENIALRDSVTDGELPQIVAESPAM
                     KNILKLV"
     gene            complement(517..>2065)
                     /locus_tag="VGD38_20895"
     CDS             complement(517..>2065)
                     /locus_tag="VGD38_20895"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0730556.1"
                     /translation="MLVRSASRQKEIAVRAALGAGRVRLLRQLLTESITLSLLGGAAG
                     ILLGSWGVQALLALNPISIPQYNKIGIDFTVLGFTLAASVLTGIVFGLAPAWQTLKFD
                     LHSALKEGGRTAIADRSQRRLSSLLVIAETAMAMVLLIGAGLLLKSFAHLLNVNPGFV
                     TENVLTMQIGLPNTGYQDAQKRAAFLKQLETNLAAAPEVSSVGFVTRLPLRSALNNLT
                     SFLAIEGREVPPGERPEIDFRRASTGYFQTMGIPLLSGRLVTEQDVTNNTASVLINEA
                     MAKRFWPGEDPVGRRISTANSTGQQTQWQTIVGVVGSVRHLGLDVEPRPEIYYHTNTS
                     PPFGPVVVIRTTGDPQRLISIARAKVRELDRDVPISNVNTMEQLVAQSVAQRRFGMFL
                     VGIFAALALVLAVVGIYGVVSYSVAQRTNEIGVRMALGASASDVLKLVLKNGMTLALI
                     GVGIGLAAAVAVTRLMSAMLFEVKPTDVATFAIVSVGLIVVALLACYVPARRAMKVDP
                     LVALRYE"
BASE COUNT          414 a          606 c          646 g          399 t
ORIGIN      
        1 caccaatttc aggatgtttt tcatggccgg cgactccgcc acgatctgcg gcagctcgcc
       61 gtcggtgaca ctgtcgcgca gcgcgatgtt ttcggcttcg agttttttgc cgcgtcgcag
      121 cgcttgcgca agctcgacct gtgttcgcaa caccgcgagc aagcgcgcgt tgtcccaggg
      181 cttttgaatg aaatcgcgcg cgccgcggcg catcgcttcg acggcgagat caacgctgcc
      241 ccaagcggtc atcaccacca cgggcagcga cggatcgaca gcgcgcagct tgctgagcaa
      301 atcgagacct tcgctaccgg aggtcgtgtc gcgcgcatag ttgagatcga tcagtacaac
      361 gtcaaactcc tgtgagtcga tggcgcggag cacaccggca ggcgacgacg cactttcgat
      421 ctgaaaacgc tcgcctttga gcagcaggct caacgcggca agaacatcgg cttggtcgtc
      481 agcgatcagg atgcgaggca tagataatct gtggccttat tcatatcgga gtgccaccag
      541 cgggtcgact ttcatcgctc ttcgcgcggg cacgtaacaa gctaacaaag ccaccacaat
      601 cagtccaacg gagacgattg cgaaagttgc cacgtcggtc ggtttcactt cgaacagcat
      661 cgccgacatg aggcgcgtca ccgcgacggc ggcggcgagt ccgatgccca cgccgatcag
      721 cgcgagcgtc attccgttct tcaaaacgag cttcaacacg tccgacgccg acgcgccgag
      781 cgccatgcgc acgccgattt cattcgtgcg ttgtgctact gaataactga cgacaccgta
      841 aatgccgacg acggcgagca ccagagcaag cgcagcgaag atgccgacga gaaacatgcc
      901 gaagcgccgt tgcgcaacag attgcgcgac gagttgttcc atcgtgttga cgtttgagat
      961 cggcacgtcg cgatcgagct ctcgcacttt cgcgcgcgcg atcgagatca ggcgctgtgg
     1021 atcgccggtg gtgcggatca cgacgacggg accgaacggc ggcgatgtgt ttgtgtgata
     1081 gtagatctcg ggacgtggtt cgacgtccag accgagatga cgaacgctgc cgacgacgcc
     1141 gacgatcgtt tgccactgcg tttgttggcc ggtggagttt gcggtgctga tgcgtcttcc
     1201 gaccggatct tcgccgggcc agaaacgttt ggccatcgcc tcgttgatca ggactgaagc
     1261 ggtgttgttt gtgacgtcct gttcggtgac gagcctgccc gaaagcagcg ggatgcccat
     1321 cgtttgaaag tatccggtgc tcgcgcgtcg aaaatcgatc tcgggacgct cgccgggcgg
     1381 cacttctctt ccctcaatgg cgagaaacga ggtgaggttg ttgagcgcgc tcctcagcgg
     1441 caggcgcgtg acaaagccga ctgacgagac ttccggagcg gcagcgagat tggtttcgag
     1501 ttgtttgaga aacgcggcgc gcttttgcgc gtcctggtag ccggtgttcg ggagtccgat
     1561 ctgcatcgtc aaaacgtttt cggtgacgaa gccgggattg acgttgagca gatgtgcgaa
     1621 gctcttcaag aggaggcccg cgccgatcaa aaggaccatg gccatcgccg tttcagcaat
     1681 cacgagcagg ctgctcaagc ggcgttggct gcgatcggcg atcgctgtgc ggccgccttc
     1741 tttcagcgcg ctgtgtagat caaacttcag tgtttgccat gcgggtgcga ggccaaacac
     1801 gatcccagtc agcacggagg ccgcgagcgt aaagccgagg acggtgaaat cgataccgat
     1861 cttattgtac tgcgggattg aaatcggatt cagggcgagg agggcctgga cgccccacga
     1921 gccgagcagg attcccgcgg cgccgccgag cagcgacagc gtgatgctct cggtcagcaa
     1981 ctgccgcaac agacgcacgc gtcccgcgcc gagtgcagcc ctgaccgcga tctctttctg
     2041 gcgcgacgca ctgcgcacga gcata
//
LOCUS       DASWTX010001376         3160 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_324441, whole genome shotgun sequence.
ACCESSION   DASWTX010001376 DASWTX010000000
VERSION     DASWTX010001376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3160
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324441"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..266)
                     /locus_tag="VGD38_20900"
     CDS             complement(<1..266)
                     /locus_tag="VGD38_20900"
                     /inference="COORDINATES: protein motif:HMM:NF014269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HEY0730557.1"
                     /translation="MVPIRDVVIFPFTKVAFKIGRPGSVRALEQALASDRTIFLATQH
                     DATVDEPSPQQIYGVGTLGRILQSQKQENGQIKVVVEGRERATTV"
     gene            complement(493..1737)
                     /gene="clpX"
                     /locus_tag="VGD38_20905"
     CDS             complement(493..1737)
                     /gene="clpX"
                     /locus_tag="VGD38_20905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HEY0730558.1"
                     /translation="MVRRTDDTLRCSFCGKSQNEVKKLIAGPTVYICNECIDICNEII
                     TDDQQAESVATRPPLPKPSEIKSFLDEYVIGQEETKKRLAVAVYQHYKRIELGRRRSD
                     VEIQKANILLIGPTGTGKTLLAQTLARMLSVPFTIVDATTLTEAGYVGEDVENIILKL
                     LQAANGDVERAQQGIIYIDEVDKICRKDENPSITRDVSGEGVQQALLKILEGTVANVP
                     PQGGRKHPHQEFFPVDTTNILFLCGGAFVGLEKVIEKRLRNKSLGFHAEVKSGSHRHA
                     EALGQVQPEDLIRFGLIPEFVGRLPVCGVLHELDEGALIKILTEPKNALVKQYQKKFD
                     FDNVKLKFTEDALKAVARQAVERKVGARGLMMILEELLLDAMYTLPSQKRVKEFVITS
                     EMVERRRAVPGEGLTGIDGAAA"
     gene            complement(1780..2364)
                     /gene="clpP"
                     /locus_tag="VGD38_20910"
     CDS             complement(1780..2364)
                     /gene="clpP"
                     /locus_tag="VGD38_20910"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HEY0730559.1"
                     /translation="MALVPMVVEQTSRGERAFDIYSRLLKDNIIFLGTPIDDQISNLI
                     VAQLLFLEAEDPEKDINLYINSPGGSITAGMAIYDTMQFIRPDVTTICVGQCASMAAL
                     LLAAGAKGKRFALPNSRILIHQPSGGSQGQATDIRIQAEEILRMRELTSQIIAKHTGQ
                     TYDTVERDVERDKIMSAMQAKEYGLIDEVIAHRE"
     gene            complement(2369..>3160)
                     /gene="tig"
                     /locus_tag="VGD38_20915"
     CDS             complement(2369..>3160)
                     /gene="tig"
                     /locus_tag="VGD38_20915"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR00115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005854 - nascent polypeptide-associated
                     complex [Evidence IEA];
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0051083 - 'de novo' cotranslational protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEY0730560.1"
                     /translation="KVDDIEVVLGGEGVQQEFTDNLLGVHPEETKSFVVQYAEDFSAA
                     GLAGKKVEYEVDITAVRRKEIPEADDEWVKSLGYDFDLETLKTKIREDLEMRMSMDAD
                     RRMRDEVIRELITAHPFEVPQTLVEQQTDQRLQTAVREMIARGFDPRGGNMNWEGARE
                     ELKPQAEDDVRASMLLEQVAEAENISVSDEEVQAEIDALATATQQSKEQVLAALTKSG
                     GERSIAHRLRNRKALDLLIENANITEAEWTEPKDSEASEAEASKE"
BASE COUNT          621 a          840 c          878 g          821 t
ORIGIN      
        1 acagtggtgg cgcgttcgcg tccttcaacc acgactttga tctgaccgtt ctcctgtttt
       61 tgtgactgga gaatgcggcc gagcgtcccg acgccgtaga tttgctgcgg cgacggctcg
      121 tcgactgtcg cgtcgtgctg agtagctaga aagattgtcc gatcactggc gagcgcttgt
      181 tcgagcgcgc gaacggaacc gggacgacca atcttgaagg cgaccttagt aaaaggaaat
      241 atgacgacgt cgcggatcgg taccatcgga taccaggcta cgtctgcggg ggttctatct
      301 gagtattctt ccatggtttg aaacagcttt tctctggggg actttttgca gcaaaggcga
      361 gcactaaaac tacggtctcg ccttattgaa aaagaggcct aattgtaatt catttcctaa
      421 aggcgcgcta ccatcatgcc tcacgggtcg tgctcatgag agacacagtg ggagaggatt
      481 gtcgggatta ttttaagcgg cggcgccatc aatgccggta agtccttcac cgggaacggc
      541 gcggcggcgt tcgaccatct cgctcgtgat gacaaattcc ttgacgcgtt tttgcgaggg
      601 cagtgtgtac atggcgtcaa gaagcagttc ttccaggatc atcatcagtc cgcgagcgcc
      661 gacttttcgc tcaactgcct gtcgggcaac agctttgaga gcgtcttcgg tgaacttcaa
      721 cttgacgttg tcgaagtcga acttcttctg atactgcttg accagggcgt tctttggctc
      781 ggttaaaatc ttgatcaacg cgccttcgtc caactcgtgc aaaacgccac acaccgggag
      841 acggcccacg aactcgggaa tgagtccgaa gcgaatcaga tcttccggct gcacttgtcc
      901 gagcgcttcc gcgtggcggt gactgcccga cttgacctcg gcgtggaaac cgagtgactt
      961 gttgcgcagc cgcttctcga taactttttc gagaccgacg aacgcgccgc cgcacaggaa
     1021 gagaatgttt gtcgtgtcga cggggaagaa ttcctgatgc ggatgcttgc gtccgccttg
     1081 cggtggaacg ttggcaacgg tgccttcgag gatcttcaac aacgcttgct gcacgccttc
     1141 accggagacg tcgcgcgtga tcgaagggtt ctcgtctttg cggcagatct tgtcgacctc
     1201 gtctatatag atgatgcctt gctgcgcgcg ttcgacgtcg ccgttcgcgg cctgaagaag
     1261 tttgaggatg atgttctcga cgtcttcacc gacgtaacct gcttcggtga gtgtcgtggc
     1321 gtcgacgatt gtgaacggca cgctcaacat gcgcgcgagt gtttgcgcga ggagcgtctt
     1381 gccggttccg gtcggaccga tgagcaggat gtttgctttc tggatctcga cgtcagaacg
     1441 acggcggccg agctcgatac gtttgtagtg ctgatacaca gcgacggcca ggcgcttctt
     1501 cgtttcctcc tggccgatca cgtattcgtc taagaaactt ttgatctcgc tgggcttcgg
     1561 cagcggcggt cgagtggcta cggactctgc ctgctgatcg tcggtaatga tctcgttgca
     1621 gatgtcgatg cactcgttgc agatgtaaac agtcggaccg gcaatgagct tcttaacttc
     1681 attctgcgac ttaccacaga atgagcagcg cagagtatca tcggttcgtc tcaccataat
     1741 gtcttaaaaa gcggaagctc ctttagggaa tgcccggtgt tattcccggt gcgcgatgac
     1801 ctcgtctatt aaaccatatt ccttagcctg catggcagac ataattttat cgcgctcaac
     1861 atcgcgttcg acggtgtcgt acgtttgacc cgtgtgtttg gcgatgatct gggacgtgag
     1921 ttcgcgcatg cgcaggatct cttcggcctg aatacgaatg tcagtagcct ggccctgcga
     1981 gccgcctgat ggttggtgaa tgaggatacg agaattggga agagcgaagc gttttccttt
     2041 agcgcccgcg gcgagcagca gtgccgccat cgaagcgcat tgtccgacgc agatagtcgt
     2101 gacgtcgggc cggatgaatt gcatcgtatc gtagatcgcc attccagccg tgatcgaacc
     2161 gccaggtgaa ttgatgtaga ggttgatgtc cttttctgga tcttctgctt cgaggaagag
     2221 aagttgggct acgattaggt tggaaatctg atcgtcgatc ggggtaccca ggaaaataat
     2281 attatctttc aacagccgcg agtaaatatc gaaggcgcgt tcgcctcgcg aagtttgctc
     2341 gacaaccatg gggactaaag ccatatcttt attccttact tgcctctgct tctgatgctt
     2401 ctgagtcctt gggttcagtc cactcagctt cggttatgtt cgcgttttca attagaagat
     2461 caagcgcttt acgattgcgc aatctgtgcg cgatgctacg ttcgccccca ctctttgtca
     2521 aggcagcaag cacttgctct tttgattgtt gtgtagcagt tgcgagcgca tcgatctcgg
     2581 cctgcacttc ttcgtcggag acgctgatat tttcggcttc ggcgacttgt tcgagcagca
     2641 ttgaagcgcg tacgtcgtct tcagcttgag gctttaactc ctcgcgcgcg ccttcccaat
     2701 tcatgtttcc accgcgtgga tcaaaaccgc gtgcgatcat ctcgcgcacg gcagtttgca
     2761 aacgctgatc ggtttgttgt tcgaccaggg tctgcggcac ttcgaacgga tgagccgtga
     2821 tcaattctct tatcacctcg tcgcgcatgc ggcgatcggc gtccatgctc atgcgcatct
     2881 cgaggtcttc gcgaatcttc gtcttcagcg tttcgagatc gaagtcgtaa ccgagactct
     2941 tgacccactc gtcgtcagct tccggaattt ctttgcggcg cactgcggtt atgtctactt
     3001 cgtactcgac tttctttccg gcgagaccgg ctgcggagaa gtcttccgca tactgcacta
     3061 cgaaactctt cgtctcttcc ggatgaacgc cgagcaggtt gtcggtaaac tcctgttgca
     3121 cgccttcgcc gccaagcacg acttcgatgt cgtcgacttt
//
LOCUS       DASWTX010001377         3905 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_63651, whole genome shotgun sequence.
ACCESSION   DASWTX010001377 DASWTX010000000
VERSION     DASWTX010001377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3905)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3905)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3905
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63651"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2465
                     /locus_tag="VGD38_20920"
     CDS             <1..2465
                     /locus_tag="VGD38_20920"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0730561.1"
                     /translation="EGFRTDMETLIQDIKFGLRMLLKSPSLSIVATIALALGIGANTA
                     IFSVVNAVLLRPLPFPNSEALMAVYETNAQRGSVRGSHSYPNYFDIRSQNTVFEHVAA
                     YHGADYVMTGRGEPLRLQGLVVTSDLFPLLGVAPKLGRTFLPDEEKPSSTGRVAIISE
                     QLFRQRFGSDPTIVNQPITLDGVSFTVIGVMPDTFEFPIQNEPVELWTTIAGDASGKS
                     PVTNQRGAHFLRVLGRLKPNVTPEQAQSELTAIAARLEQAYPDTNTQRSLRLEPALSA
                     LVGDIRPALLILLAAVACVLLIACANVANLLLARATSRHKEMAVRAALGASRMRVIRQ
                     LLTESILLSLVGGAVGLLLAVWWADLLVALGKEDIPRAVHVAIDWRVLGFTLGVSVLT
                     GLIFGIVPAFHSSKTELVESLKEGGRSGSEGARRNRMRSVLVVGELAIAVVLLVAAGL
                     LIQSLWRLQNVSTGLQPDNVLTFSLGLPETRYDTDRQAKFYSDLKTRIESSPGVQSAS
                     SIMPLPLSGERFMISFQIEGREVAPKDEPSADIFFTGIGYFRTMGIPVLKGRDFDNRD
                     QHGSPRVTIVTEEFARQYFPNEDPIGKRIRPGISTYEGEDDRYCEIVGVVGDIRNRSL
                     DTAPQPAYYVPQTQVPFSQMTMVVKTSTDPHSLVSGVTKEVAAMDADLPLFGVKTMHE
                     YLSASVATPRFSTTLLSLFAGVALVLTLVGLYGVMSYSVVQRTNEIGIRLALGAQSRD
                     VLLMIVKQGSVLIVLGLGIGLLGAYAASKFVSSLLFGVTAKDPFTFAAVAVLLALVGL
                     LACYIPAWRATKVDPMDALRHE"
     gene            2482..>3905
                     /locus_tag="VGD38_20925"
     CDS             2482..>3905
                     /locus_tag="VGD38_20925"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0730562.1"
                     /translation="MSTLLADIRFGVRVLLKSPTVTIVAIVALMLGIGANTAIFSVVN
                     AVLLRSFPYSDPEKLVLVWEKRQGGRTDQNVINLANFTDWRNQNQVFSDMAVFFDRSL
                     NLTSDGEPEEVPGQFATVNLFSVLGTNPVLGRTFVADDARDNQPSVVIISYGLWQRRF
                     GGDSGILGRQITLNNRQNTVVGVMPANFGWHIQRGTEASKPADIWVPFQITNEMIIRR
                     GRFASAVARIKPDVTIEQAQSEMATIAARLEQQYPDFNKTWGVNVVPLRTQFTGEIRR
                     PLLILLGAVGFVLLIACANVANLLLARASSRRKEIAVRAGLGASRWRISRQLLTESVL
                     LSLIGGALGVVVAWWGTKALVALSPPALIDLQRVSVNVPVLLFTLGLSLLTGVVFGLA
                     PALQATRFDLQGALKEGGKNVGGAAGGHHLRNAFVVTQVALALVLLVGAGLLVKSFTR
                     LQSVDPGFNSDNLLTVRVTLPSAK"
BASE COUNT          718 a         1071 c         1256 g          860 t
ORIGIN      
        1 aggagggatt tagaaccgat atggagacgc tcatacaaga cattaaattt ggtttgcgca
       61 tgctgctcaa atcgccgagc ctcagcatcg tcgccacgat cgcgcttgcg cttggcatcg
      121 gcgccaacac cgcgatcttc agcgttgtaa acgcagtgct gctaaggcca ctgccgtttc
      181 cgaactcaga ggcgctgatg gcggtttacg aaacaaacgc gcagcgcggc agcgtgcgcg
      241 gttcgcactc gtacccgaac tacttcgata tacgttcgca gaacacggtg ttcgagcacg
      301 tcgctgctta tcacggcgcc gactacgtca tgaccggccg cggtgagccg ctgcgtttgc
      361 agggcctggt tgtgacctcc gatctgtttc cattactcgg tgtcgcgccc aagcttggcc
      421 gaacgttcct gcctgacgaa gagaaacctt cgagcaccgg ccgcgtcgcg atcatcagcg
      481 agcaactgtt ccggcaacgg ttcggctccg atccaacgat cgtgaaccaa ccgatcacgc
      541 tcgacggcgt cagcttcacc gttatcggcg tgatgcccga tacgttcgag tttccgattc
      601 aaaacgaacc ggtcgagtta tggaccacga tcgcgggcga cgcgagcgga aagtctccgg
      661 ttacgaacca acgcggcgca cacttcctgc gcgtgctcgg acgcctcaag ccgaatgtga
      721 ctcccgagca ggcgcagagt gagttgacgg cgatcgctgc gcgtctcgaa caagcgtatc
      781 ccgacacgaa cacgcagcgg agtttacgac tcgagcccgc gttgtcggct ttggtcggcg
      841 acatccgtcc ggcgttgttg attctgctcg cggcggtcgc gtgtgtgctt ttgatcgcgt
      901 gcgcgaacgt cgcgaacctg ctgctcgcac gcgcgacgag ccgtcacaag gaaatggctg
      961 ttcgtgcggc actgggcgcg agccggatgc gcgtgatccg ccagttgttg accgaaagca
     1021 ttttgctttc actcgtcggt ggcgctgtcg gactgttgct cgccgtctgg tgggccgatc
     1081 ttttggtcgc gcttggcaag gaagatattc cgcgcgcggt gcacgtcgcg atcgactggc
     1141 gcgtgctcgg ctttacgctt ggagtgtccg ttctcaccgg tctgatcttc ggcatcgtgc
     1201 cggcgtttca ttcttcaaag actgaactcg tcgagtcgct gaaagaaggc gggcgcagcg
     1261 gaagcgaagg cgcgcgccgc aatcgcatgc gcagtgtgct cgtcgtcggc gagttggcga
     1321 tcgcagtcgt gttgctggtc gccgccggtt tgctgattca gagtttgtgg cgtttgcaaa
     1381 acgtgagcac cggtttgcag ccggacaatg tgttgacgtt cagcctgggc ctgccggaga
     1441 cgcgatacga cactgatagg caagcgaagt tctacagcga tttgaagacg cggatcgagt
     1501 cttcaccggg cgtgcaatcg gcaagttcga ttatgccact gccgctaagc ggcgaacgtt
     1561 tcatgatttc ctttcaaatc gagggacgcg aggtcgcgcc gaaggacgaa ccatcggcag
     1621 acatcttttt caccggcatc ggctatttcc gcacgatggg cattccggtg ctcaaggggc
     1681 gcgacttcga caaccgcgat cagcatggtt cgcctcgtgt gacgatcgtt acggaggagt
     1741 tcgctcgtca gtacttcccg aacgaggacc cgatcggaaa acgcatccgt cccggaatct
     1801 ccacgtatga gggagaagac gacaggtatt gtgaaatcgt cggcgtggta ggcgatatca
     1861 gaaatcgcag cctcgacact gcgccgcaac cggcttacta cgttccgcaa acgcaagtgc
     1921 ctttttcgca gatgacgatg gtcgtgaaga cgtcgaccga tccgcacagt ctcgtttccg
     1981 gcgtgacgaa ggaagtcgcg gcgatggacg cggatctgcc gttgtttggc gtgaaaacga
     2041 tgcatgaata cttgtcggca tcggtagcga ctccgcgttt cagcaccacg ctgctttcgc
     2101 tgtttgcggg agtcgcgctc gtgctgacgc tggtcgggct ttacggagtg atgagctact
     2161 cggtggtcca acgcacgaac gagatcggaa ttcggctcgc gctcggcgcg caatcgcgcg
     2221 acgtgttgct gatgatcgtc aagcaaggct cggtcttgat tgtgttggga ttgggaatcg
     2281 ggttgttagg cgcgtatgca gcgtcgaagt tcgtttcgag tttgttgttt ggcgtgaccg
     2341 cgaaggaccc gttcacgttt gcggcagtag cggtgttgtt ggcgctggtt gggctgctgg
     2401 cttgttacat cccggcatgg cgcgcgacga aggtcgatcc gatggacgcg ttgcggcacg
     2461 agtgatcgaa ggagtgaaac gatgagcaca ttgttagctg acattcgttt tggcgtgcgg
     2521 gtgttgttga agagtccgac cgtgacgatc gtcgcgatcg tggcgctcat gctcggtatc
     2581 ggcgcgaaca ccgcgatctt cagcgtcgtg aacgcggtgc tgctgcgctc gtttccttac
     2641 tccgatcccg aaaagctggt gctggtttgg gagaagcggc aaggcgggcg cacggaccag
     2701 aacgtgatca accttgcgaa cttcaccgat tggaggaacc agaaccaggt ctttagcgac
     2761 atggccgtgt tcttcgatcg cagtctgaat ctcaccagcg acggcgagcc cgaagaagtg
     2821 ccgggacagt ttgcaactgt caatctgttt tccgtgttgg ggacgaaccc cgtgttgggc
     2881 cgaacgtttg tcgcggacga tgcgcgcgat aaccagccgt cggtcgtgat catcagctac
     2941 ggactgtggc aacggcgctt tggcggtgac agtggaatcc tcgggcggca gatcacgctg
     3001 aacaaccggc agaacacagt cgtcggcgtg atgccggcga actttggttg gcacattcaa
     3061 cgcggcacgg aagccagcaa gcctgccgac atctgggtgc cgtttcagat caccaatgaa
     3121 atgattattc ggcgcggacg ctttgcgtcg gcggtcgcgc ggatcaaacc ggatgtcacg
     3181 atcgagcagg cgcaaagcga gatggccacg atcgcggcgc ggctcgaaca gcagtatccg
     3241 gatttcaaca agacgtgggg cgtgaatgtc gttccgctgc gcacgcagtt cacgggcgag
     3301 attcgcagac cgcttttgat cttgttggga gcggttggat ttgtactgct gatcgcgtgc
     3361 gcgaatgtcg cgaacctgct gttggcgcgc gcgagttcgc gacggaaaga gatcgctgtg
     3421 cgtgcgggac tcggcgcgag ccggtggcgt atctcgcggc agttgctgac cgagagtgtg
     3481 ttgctgtcgc tgattggcgg cgcgctcggc gtggttgtcg cgtggtgggg aacgaaggcg
     3541 ctcgtcgcgt tgagtccacc ggcgctgatt gatttacagc gcgtcagcgt caacgttccg
     3601 gtgctgctat tcacgcttgg tctatcgctt ctgacgggag tcgttttcgg actcgcgccc
     3661 gcgcttcagg cgacgcgttt cgatctgcag ggcgcgctga aggaaggcgg caagaatgtt
     3721 ggcggcgctg ccggtggtca tcacttgcgc aatgcatttg tggtgacgca ggtcgcgctc
     3781 gcgctcgtgc tgctcgtcgg cgcaggtttg ttggtcaaga gcttcacacg gctgcaatct
     3841 gtcgatcccg gatttaattc agacaatttg ttgaccgtgc gcgtcacgct tccgtcggcg
     3901 aagta
//
LOCUS       DASWTX010001378         3158 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_430351, whole genome shotgun sequence.
ACCESSION   DASWTX010001378 DASWTX010000000
VERSION     DASWTX010001378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3158
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_430351"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1039)
                     /locus_tag="VGD38_20930"
     CDS             complement(<1..1039)
                     /locus_tag="VGD38_20930"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3857 domain-containing protein"
                     /protein_id="HEY0730563.1"
                     /translation="MKTSISCLLVITLVLGSLGTHWPTAHAAGEEWRPLDPAHLGLKA
                     AVVEPNADAEAIFWDIRVDDGGQDDLVLSHYVRIKIFTERGREKHSKIDIPYISGVKI
                     KDVAARTIKPDGSIVELAKQDIIEKTVVKVSGMKLRTKTFAFPGIEPGAIIEYKWKEV
                     ISNSSANNLRLQFQRDIPVQTITYHIKPAGKMTVDVRAFNMDEPQFETEKNGFRVTTV
                     TNMPAFREEPHMPPEDNVRSWAMVKYYSIFSLLLGYPMLANQVYVGFAPYMKVDKEIK
                     AKAAEITTGATTDDEKLQKIFDFVRTNIKNTQDENSGFTEDQIEKLKENKKPSDTLKR
                     GVGPGIDINLLF"
     gene            complement(1068..1952)
                     /locus_tag="VGD38_20935"
     CDS             complement(1068..1952)
                     /locus_tag="VGD38_20935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730564.1"
                     /translation="MIEAVMFWNEPNNKSHWDFEIDPDWSTFAAMVKLAADAVRSENP
                     NLTRVLGGISPIDPEFIRNMDAKGVLSCLDVVALHGFPLDWNHWSIHEWPDKIREMRE
                     VTELPIWISEVGASTFGAEEVQEFGLKRSAELLIGRVPRIHWYSLYDLPKAWPATTRH
                     REAEGSAYYRHFHMGLLDEDGNPKRALWQFADYAPALGICQWFHFEDHRLDKAVRWLQ
                     RLGVKHLRTGLSWSDSERPNYEAWFDRMMTALEPFELTLTFCFTPESKGINPHHTSAP
                     RNIEEYAEFCAQMVKRYS"
     gene            complement(1949..2668)
                     /locus_tag="VGD38_20940"
     CDS             complement(1949..2668)
                     /locus_tag="VGD38_20940"
                     /inference="COORDINATES: protein motif:HMM:TIGR04290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR04290 family methyltransferase"
                     /protein_id="HEY0730565.1"
                     /translation="MLSTEQIRQRVAELGEWFHNLNLGGVQTAPDHFLGDYPQIKWRQ
                     FSSAIPEDLRGKSVLDIGCNGGFYSIQMKRRGADRVVAIDTDEKYLAQARFAAKVSNT
                     EIEFRNLSVYQVADLRERFDLVLFMGVLYHLRHPLLALDLLHEHVVGDLLVTQSLLRG
                     SKGDMVVPRDFPFWEQEIFERDEFPRMYFIENRYANDPTNWWIPNRACFEAMLRSAGF
                     EILDHPEDEVFICRRTPENTR"
     gene            complement(2662..>3158)
                     /locus_tag="VGD38_20945"
     CDS             complement(2662..>3158)
                     /locus_tag="VGD38_20945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730566.1"
                     /translation="TPAGLCDAIFRALPFIERHEEVLVGLPDTIWFPENGFAALPNDQ
                     LSFLVFPVERPEFFDAVVADEHGRVLRIEVKDSYPSSSWVWGAFKMPGSILHDLYELW
                     CKRHGSDEYIGTLINAYLAAGGEALSVPAGEVYVDVGTLNGYREAMRVLREHHEPDLE
                     HVRC"
BASE COUNT          658 a          920 c          885 g          695 t
ORIGIN      
        1 caaacagcag gttgatatcg atgcctggtc caacgccgcg tttcagtgtg tcagacggtt
       61 tcttgttctc tttcagcttc tcgatctgat cttcagtaaa cccggagttc tcatcctgcg
      121 tgttcttgat atttgtgcgc acgaagtcga agattttctg tagcttctcg tcatctgtcg
      181 tcgcgcccgt ggtaatctcg gcagctttcg ctttgatttc cttgtcaact ttcatgtacg
      241 gcgcaaaccc gacataaacc tgattcgcga gcatcggata accgagcagc agcgagaaga
      301 tgctgtagta cttcaccatg gcccacgacc gcacgttgtc ttccggcggc atgtgaggct
      361 cttcgcgaaa cgccggcatg ttggttacgg tcgtcacccg aaagccgttc ttctccgtct
      421 caaactgagg ctcgtccatg ttgaacgcgc gcacgtccac agtcatcttg cccgcaggct
      481 tgatgtgata agtgatcgtc tggaccggaa tatcgcgttg aaactgaagc cgcagattgt
      541 ttgccgaaga gtttgagatc acttccttcc acttgtactc gataatcgcg cccggctcga
      601 taccgggaaa cgcaaacgtc ttcgtgcgca gcttcatgcc actgactttc accaccgtct
      661 tctcgatgat gtcttgtttc gcgagctcga cgatcgatcc gtccggcttg atcgtgcgtg
      721 cagcaacgtc cttgatcttg acgccgctga tgtaagggat gtcgatcttg ctgtgcttct
      781 cgcggccgcg ttcggtgaaa atcttgatgc gcacgtagtg cgacagaacg agatcgtcct
      841 ggccgccatc gtccacgcgt atgtcccaga agatggcttc ggcatcggcg ttgggctcga
      901 cgaccgccgc tttgagcccg aggtgagctg ggtcgagagg gcgccattct tcacccgcgg
      961 catgcgcggt aggccagtgc gttccgagtg agcctaaaac taaggtgatt acaagcaggc
     1021 aggatatcga ggttttcatg aggcggattc tatatcaaat ccgccgctca ggaatacctt
     1081 ttaaccatct gcgcgcagaa ttccgcgtac tcctcgatgt tgcgcggggc gctggtgtga
     1141 tgcgggttga tgcccttgga ttcaggcgta aaacagaagg tcagcgtcag ttcgaacggc
     1201 tcgagcgcag tcatcatccg gtcgaaccac gcttcgtaat tcggccgttc actgtcagac
     1261 cagctaagac ccgtgcgcag gtgtttgacg cccaaacgct gcagccaccg gaccgcttta
     1321 tcgagccggt gatcttcgaa atgaaaccac tggcaaatcc cgagcgcggg cgcgtaatcg
     1381 gcaaactgcc ataacgcccg tttgggattt ccgtcctcgt cgagcagacc catgtggaag
     1441 tggcgatagt aggctgagcc ttctgcctcg cggtggcgcg ttgtagcggg ccacgccttt
     1501 ggcagatcgt agagactgta ccagtgaata cgcggcacac gcccgatcag caactcagcc
     1561 gaacgcttga gaccaaactc ctgaacctct tccgcgccaa acgtcgacgc gccgacttcg
     1621 gagatccaga tcggcaactc agtcacctca cgcatctcgc gaatcttgtc gggccattcg
     1681 tgaatggacc agtggttcca gtcgagtgga aagccgtgca gtgcgacgac gtcgagacag
     1741 ctcaacacgc cttttgcgtc catgttgcgg atgaactccg gatcgatcgg cgagatgccg
     1801 ccgagaactc tcgtcaggtt gggattttcg gaacgcaccg cgtcggcggc gagcttgacc
     1861 atcgccgcaa acgtgctcca gtcaggatcg atttcaaagt cccaatgaga tttgttgttt
     1921 ggttcgttcc agaacatcac cgcttcgatc atcgcgtgtt ctccggcgtg cggcggcaaa
     1981 tgaagacttc atcttccgga tggtccagga tctcgaatcc cgcgctgcgc agcatcgctt
     2041 cgaagcaggc gcggtttgga atccaccagt tggtcggatc gttggcgtag cggttctcga
     2101 tgaaatacat gcgcggaaac tcgtcgcgtt caaagatctc ctgttcccaa aacggaaaat
     2161 cgcgcggcac gaccatgtct cctttcgagc cgcgcagcag cgactgtgtt acgagtagat
     2221 cgccgacgac gtgttcgtga agcaaatcga gcgcgagtaa cggatggcgc aggtgataca
     2281 ggacgcccat gaacaaaacc aggtcaaagc gctcgcgcag atccgcgact tgatacacgg
     2341 acagattgcg aaactcgatc tcagtgttac tgaccttcgc agcgaagcgc gcctgcgcga
     2401 ggtacttttc gtcggtgtcg atagcgacga cgcgatccgc gccgcgccgt ttcatctgga
     2461 tcgagtagaa gccgccgttg cagccgatgt cgagcacgga cttgccgcgc agatcttcag
     2521 gaatcgcgga cgagaattgc cgccacttga tctgcggata gtcgccgagg aaatgatcgg
     2581 gagcagtctg cacgccgccg aggttgagat tgtgaaacca ctcgcccaac tccgcgactc
     2641 gttgcctgat ctgttcagtg cttagcatct cacatgctcc aaatcgggtt cgtggtgctc
     2701 gcgcaagacc cgcattgctt cgcggtatcc gttcaacgta ccgacgtcga cgtaaacttc
     2761 tcccgcgggc accgaaagcg cttcaccgcc ggcggcgagg tacgcattga tcagcgtgcc
     2821 gatgtactcg tcggagccgt gacgtttgca ccacagctcg taaaggtcgt gcaggatcga
     2881 gccgggcatc ttgaacgcgc cccagaccca cgacgagctc ggatacgaat ccttcacttc
     2941 gatacgcagc acgcgtccgt gttcgtctgc cacaaccgcg tcgaaaaact ccggccgttc
     3001 gacgggaaaa accagaaacg agagctgatc gttcggaagt gcggcgaagc cgttttccgg
     3061 aaaccagatc gtgtccggca gaccgacgag cacctcttcg tgacgctcga taaagggcaa
     3121 cgcgcgaaag atcgcgtcgc acaaacccgc gggcgttc
//
LOCUS       DASWTX010001379         2448 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_191305, whole genome shotgun sequence.
ACCESSION   DASWTX010001379 DASWTX010000000
VERSION     DASWTX010001379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2448)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2448)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2448
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191305"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..239)
                     /locus_tag="VGD38_20950"
     CDS             complement(<1..239)
                     /locus_tag="VGD38_20950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730567.1"
                     /translation="MLHKDRAEVLFAVENTTGETRRATVKLELLDRDDDVLAETTGTQ
                     SISPGSQTLRFNLPPVVADSSTFDPKDVVWYRLRYR"
     gene            complement(475..1359)
                     /locus_tag="VGD38_20955"
     CDS             complement(475..1359)
                     /locus_tag="VGD38_20955"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HEY0730568.1"
                     /translation="MAQLEYFSSVVQEKSFSKAADKVFRTQPAVSIAIRRLEEEIGLP
                     LLDRTQKSPVLTDAGQVVYDYAQRILDLRDQVGQAIAEMQTLKKGRVRVGANESTSLY
                     LLPELILTFRERHPEVKVEIYRHVSSHLPREVLDRNVDFALMASEPEDRDIEAFPVLK
                     DELALIMSPKHPLATRTSVKIKELGNESFIAHNVKSGSRVKVIEAFARHHTPLNITLE
                     LATIETIKRFVQKRVGLAIVPRMCVREELERGVLVSVPVRGLSHTRTLWAAHRRGANF
                     SPAAAAFLRVLKLHAEGK"
     gene            1449..>2448
                     /locus_tag="VGD38_20960"
     CDS             1449..>2448
                     /locus_tag="VGD38_20960"
                     /inference="COORDINATES: protein motif:HMM:NF012431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HEY0730569.1"
                     /translation="MEWTTGAEILVEALVDEGVDTIFGYPGGAVLHIYDELWRARDCI
                     NHYLVRHEQGAVHMAEGYARATGRVGVVLVTSGPGATNAVTGIANAYMDSTPLVVITG
                     QVPKHLIGTDAFQEVDTVGITRPCVKHNYLVRDARDLAGVVREAFYLARSGRPGPVVI
                     DIPKDVSAARANHSRLDHVGCPFSAAPPPIDLTAVERAMAVILDAQRPVVYAGGGIAN
                     SGADEALRVFAEALRLPVAPTLMGLGGFPSSHPLCLGMLGMHGTYAANMAVAECDLLI
                     ALGVRFDDRVTGKLATFAPHARIIHVDIDPANIGKNVAPSLALAADVKQALEQFIGL"
BASE COUNT          460 a          709 c          750 g          529 t
ORIGIN      
        1 cggtagcgaa gccgatacca gaccacgtct tttggatcga acgtgcttga gtctgcgaca
       61 acggggggca ggttgaaccg caaagtctgg ctgcccggcg agatcgattg agtgccggtt
      121 gtttcggcaa ggacgtcgtc gtctctatcc aacagctcga gtttgacggt ggcccttcga
      181 gtctcgcccg ttgtgttctc aaccgcaaag agcacttccg cacgatcctt gtgcaacacg
      241 aacctggtcc gtgcctcgtt aacgctgagg tcgccgccgg cacgggtgag ttgaactacg
      301 agaaggaaca ggagtgaaag gcaaaacagg gaaagaagcc gtctgtggct catagctgcc
      361 tcacgaggtt cgattgatct ttattgcttg cttgagcctg gggaggatct cgctgatgtc
      421 agcgtgtgag atgtggaaat ttgtgaatcc gttgtttgaa aaaaccaatc gtcttcactt
      481 tccttcagcg tgcagtttga gcactcgtag aaacgccgcc gcggccggtg agaaattcgc
      541 gccacggcga tgcgcggccc aaagcgttct ggtgtgactc aggccacgca ccggaacact
      601 caccaacacg ccacgctcta gctcttcacg cacgcacatg cgcggcacga tcgcgaggcc
      661 cacccgcttc tgcacgaaac gtttgatcgt ctcgatcgtc gcgagttcga gcgtgatgtt
      721 caacggcgtg tggtggcgcg caaacgcttc gattactttc acacgcgatc ccgatttgac
      781 gttgtgcgcg atgaacgatt cgtttccgag ttccttgatc ttcactgacg tgcgcgtcgc
      841 gagcggatgt tttggactca tgatcaacgc gagctcgtct ttgagcaccg ggaatgcttc
      901 gatgtcgcgg tcttccggtt ccgaagccat gagggcgaag tcgacgttgc gatcgagcac
      961 ctcacgcggc aagtgactcg agacgtgacg atagatctct accttcactt ccggatgccg
     1021 ctcgcgaaac gtcaggatca gctccggcaa cagatacagc gaagtgctct cgttggcgcc
     1081 gacgcgaaca cggcccttct tgagcgtctg catttccgcg atcgcctgtc ccacctgatc
     1141 gcgaaggtcc aggatgcgtt gagcgtagtc gtagaccacc tgcccggcgt cggtaagcac
     1201 gggcgacttc tgcgttcgat cgagtaatgg gagaccgatc tcttcttcga gccgccgaat
     1261 cgcgatgctc accgccggct gcgtgcgaaa caccttgtcg gctgctttcg aaaaactctt
     1321 ctcctgcacc acgctcgaga agtattccag ttgtgccatc tccatggcgc ggaattataa
     1381 cgacatttag gattatctta aaagaataaa ttttacaaca ggcgattagg agcgtagagt
     1441 ccgccctcat ggaatggacc accggcgccg aaatacttgt cgaggccctc gtcgacgagg
     1501 gtgtcgacac gatcttcggc tatcccggcg gcgccgtgct gcacatctac gacgagctct
     1561 ggcgcgcacg cgactgcatc aatcactacc tcgtgcggca cgagcagggc gccgtgcaca
     1621 tggcggaggg ttacgcccgg gcgaccgggc gtgttggtgt cgtgctggtc acgtcggggc
     1681 ccggcgcgac caacgccgtg accggcatcg ccaacgctta catggattca acgcccctcg
     1741 tcgtgatcac gggccaggtg ccgaaacacc tgatcggcac ggacgcgttt caggaagtgg
     1801 acacggtcgg gatcacgcgc ccgtgcgtca agcacaacta tctggtgcgc gatgcgcgcg
     1861 atcttgccgg cgtggtgcgc gaggcttttt atctcgcgcg ttcgggccgt cccgggccgg
     1921 tcgtgatcga tattccgaaa gacgtcagcg ccgcgcgcgc gaatcattca cggctggacc
     1981 acgtgggatg tcccttctct gccgcgccgc cgccgattga tctaaccgcg gttgagcgtg
     2041 cgatggctgt gattctggat gcgcagcgtc cggtcgttta cgcgggcggc gggatcgcga
     2101 attcaggcgc cgatgaggcg ttgcgcgtgt ttgctgaagc cttgcgtttg ccggtggccc
     2161 cgacgttgat gggactgggc ggttttccgt cgtcgcatcc gctttgtctc gggatgttgg
     2221 gaatgcacgg aacgtacgct gcgaacatgg ccgtggctga atgcgatctg ctgattgcgc
     2281 tcggcgtcag gtttgacgat cgcgtgaccg gaaaactcgc gacgttcgcg ccgcacgcgc
     2341 ggatcattca cgtcgatatc gatcccgcaa acatcggcaa gaacgttgcg ccgtcgttgg
     2401 cgcttgcggc ggacgtgaag caggcgctcg agcagttcat tggtttgg
//
LOCUS       DASWTX010001380         1735 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_63763, whole genome shotgun sequence.
ACCESSION   DASWTX010001380 DASWTX010000000
VERSION     DASWTX010001380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1735)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1735)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1735
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63763"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..639
                     /locus_tag="VGD38_20965"
     CDS             <1..639
                     /locus_tag="VGD38_20965"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HEY0730570.1"
                     /translation="GTVVLDEIAHLSTDAQAKLLRVIETREFERLGGRKTIKLDTRLI
                     ALTNVDLATAVKAGRFREDLLYRLDVIHIRVPPLRERKEDLSKLIQHFLKHYSAKHGR
                     NVERVSAPALAILQPYDYPGNARELANIIERAVIVANGKRLEEHDLPPGLNAAVSARR
                     QKEKPPSLAELEASYIAEVLARTNGNKTECARILGISRKNLYEKIARYDLRQ"
     gene            636..1094
                     /locus_tag="VGD38_20970"
     CDS             636..1094
                     /locus_tag="VGD38_20970"
                     /inference="COORDINATES: protein motif:HMM:NF014629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEY0730571.1"
                     /translation="MKFRIIWTGKTRDPRLRALIEDYAERLSHFVRCEVTEIKEPGRT
                     DKTGIDKETKRISDALRPASLTVLLDPEGAELTSHQLAAQVSGWENSGVKEVAFVIGG
                     PNGLAPELATRADKRWSLSRLTLTHEMARVLLLEQLYRAFTIVHGLPYQK"
     gene            1140..1508
                     /locus_tag="VGD38_20975"
     CDS             1140..1508
                     /locus_tag="VGD38_20975"
                     /inference="COORDINATES: protein motif:HMM:NF013427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA family transcriptional regulator"
                     /protein_id="HEY0730572.1"
                     /translation="MDKRRTKIFRDKLLDRREGLVGQVQAAELYSRERDAEATQDPAD
                     MAANAYTKELLVSMSDNDRQMLNLIDEALERIETSGYGKCIHCGEALSEKRLEAVPWA
                     RLCVRCQDLQERGLLGEDDE"
BASE COUNT          394 a          465 c          544 g          332 t
ORIGIN      
        1 ggaaccgtgg tgctcgacga gattgcgcac ctttcgactg atgcgcaggc aaagttgttg
       61 cgcgtgattg agacgcgcga gttcgagcgg ctcggcggcc gcaagacgat caaactcgac
      121 acgcgtttga tcgcgttgac caacgtcgat ctcgccacgg cggttaaggc aggacggttt
      181 cgcgaggatc tgctgtaccg gttggacgtg attcacattc gcgtgcctcc gttgcgcgaa
      241 cgcaaagaag atctttcaaa actgattcag cactttctga agcactactc ggcgaagcac
      301 ggacgcaacg tcgagcgcgt ttccgcgccc gcgctggcga tacttcagcc gtatgactat
      361 cccggcaatg cgcgcgagct cgcgaacatt atcgagcgcg cggtgatcgt cgcgaacgga
      421 aagcggctcg aagaacacga tctgccgccg gggctgaacg ccgcagtcag tgcccggcgg
      481 caaaaagaga agccgccgag tctggccgaa ctcgaggcgt cgtacatcgc cgaagttctc
      541 gcccggacga acggaaacaa gaccgagtgc gcgcgaatac tcggcatcag ccgtaagaac
      601 ctttacgaga agatcgcgcg ttatgacttg cggcaatgaa gtttcggatc atttggacag
      661 gcaagacgcg cgaccccagg ttgcgcgcgc tcattgaaga ctacgccgaa cgtctttcgc
      721 actttgttcg ttgtgaagtc acggaaatca aggaaccagg gcgtacagac aaaacgggca
      781 tcgataagga gactaagcgc atctcagacg cgcttcgtcc cgcgtcgctg acggttctgc
      841 tggatccgga aggcgcggag ttgacttcgc accaactggc ggcgcaagtc agcgggtggg
      901 aaaacagtgg cgtcaaagag gttgcgttcg ttatcggcgg acctaacggc ctcgcgccgg
      961 aactggcgac gcgagcggac aagcgatggt cgctttcgcg gttgacgttg acgcacgaga
     1021 tggcgcgcgt gctcctgtta gaacagttgt atcgagcgtt cacgatcgtt cacggcttgc
     1081 catatcagaa atgaagcggc aaccccggca ttacaagtag ggtggaggac taataattaa
     1141 tggataagag acgcactaag atattccgcg acaagttatt ggaccgtcgc gaaggactcg
     1201 tcggccaggt tcaggccgcc gagctttaca gccgcgaacg cgatgcagaa gcgacgcagg
     1261 atccggccga catggccgcg aatgcctaca ccaaagaact gctggtgtcg atgtctgaca
     1321 acgatcgcca gatgctgaat ctgatcgacg aagcgcttga aaggatcgag acctcgggtt
     1381 acggaaagtg cattcactgc ggcgaagcgc tttcggagaa acgtctcgaa gcagtgccgt
     1441 gggcgcgact ctgtgttcgc tgccaggacc tgcaggagcg cggactcctc ggcgaagacg
     1501 acgagtaatg aactgacatt atgagataat cgcggcctcc tctaaacggg aggccgcttt
     1561 tgttttgcta tgctgctcct caccagtgtc tacgatgctc tgctcacagt cgcatatccg
     1621 caagtgtgtc gtgtgtgtgg tgggagtgtg gaggaacgaa gactcggcgt cgcatgccgg
     1681 gcgtgttggg acaagacgcg ggtcttcacg ggcgcggaga cgatctgctg gaaat
//
LOCUS       DASWTX010001381         2546 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_324593, whole genome shotgun sequence.
ACCESSION   DASWTX010001381 DASWTX010000000
VERSION     DASWTX010001381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2546
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324593"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1760
                     /locus_tag="VGD38_20980"
     CDS             <1..1760
                     /locus_tag="VGD38_20980"
                     /inference="COORDINATES: protein motif:HMM:NF024743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat-containing
                     protein"
                     /protein_id="HEY0730573.1"
                     /translation="ASGGEQPGQEVTEEFHQTYPLSATGRVNLGNINGGVKIMVWDRA
                     AVQVDAIKKAYRRDRLAEARIEVTSTEENIRIKTEYPERNLSWNDKRNDNPATVEYSL
                     TVPRKAILESIELINGELEIEGVEGNVKASSVNGPVIARGLMGEARLRTVNGPLRATF
                     TELNEARPVALGSVNGDVTVVLPSNANASVRASTVHGLITNDWGIQVKHGEYVGHSLD
                     AQIGNGGPRVKLSNVNGAISITRAQDGRALSPVTSIARVDKVTDEMMAEDLARDIEMT
                     TAELTLKKMEAARVARETRQEQREAARQVNADMRQAQREIEQVQRELQRQQRLHARPP
                     RVIINRNRTDNSNWNKFTNQETKSFAVSGTPRVNITTFDGPVTVRGWDQAQVRYTATK
                     RAGDEESLKQISIETEQQGQTISINAKNPNAYSGSVNLEVYVPRNSSLHVTSGDGPLT
                     LDGVSGDITLRSGDGPISVNNSGGQLHVNTGDGPIQINKFDGQVDARTGDGPIALDGN
                     FNALNARTGDGQISLTVPAGSSFTIETNATQGIANEGFDVAEDVTLSPRVKRWRVGNG
                     GQVFVLRTGEGKVLLRPRN"
     gene            1900..>2546
                     /locus_tag="VGD38_20985"
     CDS             1900..>2546
                     /locus_tag="VGD38_20985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0016052 - carbohydrate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding protein"
                     /protein_id="HEY0730574.1"
                     /translation="MRSCIRSLGSFLAVLCAFTVCVNAQTPANPPAVVAPTPAETASP
                     NPTPAASPTPAKLANNASAATAKGSFVLPPEKSNPVVVPRFDKPPVIDGKLDEEVWQR
                     AVVLKDFYQIQPGDNTAPSKPTEVLLGFDPKFLYIAFKATDEPDKVRATVAKRDNIFQ
                     DDYVGFFLDTFNDKRKAFEVFFNPLGIQGDGILTEGRGEDFSVDLLLESKGIVHET"
BASE COUNT          607 a          749 c          713 g          477 t
ORIGIN      
        1 aggcgtccgg tggcgagcaa ccgggccagg aggtaactga ggagtttcat caaacgtatc
       61 cactatcagc tacaggacgc gtcaatctcg gaaacatcaa tggcggagtg aagatcatgg
      121 tttgggaccg cgccgcggtt caggtcgacg cgattaaaaa ggcctaccgc cgcgaccgtc
      181 tcgccgaagc ccgaatcgaa gtcacctcga ctgaagagaa catcagaatc aaaaccgagt
      241 atccggaacg taacctgagc tggaacgaca agcgcaacga caatcccgcg accgttgagt
      301 actcgctgac ggttccgcgc aaagcaatcc tggaatcgat cgagctaata aacggcgaac
      361 tcgagatcga gggtgttgaa ggaaacgtca aagcgtcttc ggtcaacggg cctgttattg
      421 cgcgtggcct gatgggtgaa gcaagactga gaaccgtcaa tggcccgttg cgggcgacgt
      481 tcaccgaact caacgaggcc agaccggtcg cgctcggttc agtgaatggc gacgtgaccg
      541 tggtccttcc ttcgaatgca aacgcttcgg ttcgcgccag caccgttcac ggattgatca
      601 caaatgactg gggtattcag gtcaagcacg gcgagtacgt cggtcacagt ctcgatgcgc
      661 aaatcggtaa cggtggtcca cgcgtcaaac tcagcaacgt aaacggcgcg atcagcatca
      721 cgcgcgcgca ggatggccgt gcactcagtc cggttacgtc tatcgcccgc gtcgacaagg
      781 tcacagacga aatgatggct gaagacctcg cgcgcgatat cgagatgacc actgctgagc
      841 tcacgctcaa gaagatggaa gctgcccgcg tcgccagaga gacacgccag gagcagcgcg
      901 aggccgcccg gcaagtcaac gcagacatgc gccaggctca gcgcgagatc gaacaggttc
      961 aacgtgagct ccagcgccag cagcgtctac acgcgcgccc gccacgcgtg atcatcaacc
     1021 ggaaccgaac cgacaacagc aattggaata agttcaccaa ccaggaaacg aagagttttg
     1081 ccgtcagcgg tacgccacgc gtgaacatca cgacgttcga tggtccggta accgttcgcg
     1141 gttgggacca ggcacaagtt cgttacactg ccaccaagcg agcgggcgac gaagagagtc
     1201 tcaaacagat ctcgatcgaa accgaacaac agggacagac gatctccatt aacgccaaaa
     1261 atccgaacgc ctatagcggc agcgtcaatc tcgaagtcta cgttccccgt aacagcagcc
     1321 tccacgtcac ttccggtgat ggcccgttaa ccctcgacgg tgtttccggc gacatcaccc
     1381 tgcgctccgg cgatggacca atctcggtca acaacagcgg cggtcaactg cacgtcaaca
     1441 ccggcgatgg cccgattcaa atcaataagt ttgacggcca ggtcgacgcc cgcaccggcg
     1501 acggtcccat cgcgctcgat ggaaacttca acgctcttaa tgcccgaacc ggcgacggcc
     1561 agatttcgtt aacagttccg gccggttcga gtttcaccat cgaaaccaac gctactcaag
     1621 gaatcgcgaa cgagggtttc gatgttgctg aagacgtaac tctttcgccc cgcgtcaaac
     1681 gctggagagt cggcaacggc ggtcaagtgt ttgtactcag aaccggcgaa ggaaaagttt
     1741 tactgcgtcc ccgtaattga ttgcgttcgc tctggaagat tccttgggcc gcgtgcgtcc
     1801 aagtgagcgg gaacctttcg ggcagctcta aaacaaaaca gcccgtcctt ttgggatgcg
     1861 ttcccggcgc ccaaaaggcc ttctcgttca cggagcccaa tgagatcctg catccgttct
     1921 ttggggagct ttctggccgt gctttgtgcg tttaccgtct gcgtaaatgc gcaaacgccg
     1981 gctaatcctc cggccgttgt tgcgccgact cccgccgaaa ctgcttcccc gaatcccacg
     2041 cccgctgctt ctccaacgcc ggcaaaatta gcgaacaatg cttcggccgc gacggccaaa
     2101 ggcagctttg tgttgccgcc ggagaagtcg aacccggttg tggtcccgcg ttttgataag
     2161 ccgccggtga tcgacggaaa gctcgacgag gaagtctggc agagggccgt cgtgttgaag
     2221 gacttctacc agattcaacc gggcgataac acggcgcctt cgaaaccgac cgaagtgttg
     2281 ctcggcttcg atccgaagtt tctctacatc gctttcaaag cgaccgacga gcctgacaag
     2341 gtgcgcgcga ctgtggccaa gcgcgacaac atttttcagg acgactacgt cgggttcttt
     2401 ctcgacactt tcaacgacaa acgcaaagcg tttgaagtct tcttcaaccc gctcgggatt
     2461 cagggcgacg gcattctgac cgaaggccgc ggtgaggatt tcagtgtcga tctgttgctg
     2521 gagtcgaaag gaatcgttca cgagac
//
LOCUS       DASWTX010001382         2424 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_84973, whole genome shotgun sequence.
ACCESSION   DASWTX010001382 DASWTX010000000
VERSION     DASWTX010001382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2424)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2424)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2424
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84973"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..231
                     /locus_tag="VGD38_20990"
     CDS             <1..231
                     /locus_tag="VGD38_20990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730575.1"
                     /translation="SRALKIANSDFFFENTFYYLPKDQLKKRHNFFTSGFEVFVIKNF
                     GFGLTYKHGESAPKFKPIHSFGGTLTVRFGPE"
     gene            330..1028
                     /locus_tag="VGD38_20995"
     CDS             330..1028
                     /locus_tag="VGD38_20995"
                     /inference="COORDINATES: protein motif:HMM:NF015866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_process: GO:0055070 - copper ion homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
                     /protein_id="HEY0730576.1"
                     /translation="MIEVMPLLEVIACSVADAIEAEKGGAGRLEIVRDLKRGGLTPPF
                     ELVQEIKQRVGLPLRVMLRENDGFETRDDEIDRLCVAAERFASIEVDGFVLGFLKNGD
                     VDVKRTQRVLACAPHIRATFHHAFEAATDRLRALSAIKQLPQVDRILSSGGTDDLGSR
                     VQRLGEYSEAAAPELIILAGGGIDSDSMINIGRETRIREFHVGRAARAQFDVEGGVQA
                     SLVSGLVQKLKEIS"
     gene            1054..>2424
                     /locus_tag="VGD38_21000"
     CDS             1054..>2424
                     /locus_tag="VGD38_21000"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEY0730577.1"
                     /translation="MKLRSGSRPKVYEIAALLFLLIVIGLQVFFSVRRESQTWDEGNH
                     IFTGYRTWTHADFGLNPEHPPLVKLLTTVPLLSLQPKSPALEERFFKEDAFLRGKEFL
                     YQNDADQILSRTRTAAATLTLLAALVVFFGTKEMFGTGAAFIALALLAFDPNHLAHGA
                     LITTDVGLACFMFLAVFMFYRFVKSPSALRLIVAGVSVGLVLAVKHTGLLILPILFLL
                     TLCEMVLNRATANRGGQVLKLFGSLAMIALIGWMVLWSFYGFRYAARPDGLQLNPLLA
                     DYVKGLEPYEAWPISTASRFRLLPESYLYGLVDVKLTANYYTSYVLGKVYAHGVWFYF
                     PIAFLVKSTIGVLALFLLTLGVIAVRRLNHAREILFLAVPVIFYLLVALTVGMNIGVR
                     HILVVYVFLYVLIGGAAWALIRMSRKWAYVVGVLLLVHVASSVAAFPNYIPYANELCG
                     GPSQTHK"
BASE COUNT          468 a          620 c          704 g          632 t
ORIGIN      
        1 agccgtgcgt tgaagatcgc caactcggat ttcttcttcg agaacacgtt ttactatttg
       61 ccaaaagatc agctcaagaa acggcacaac ttcttcactt ccggcttcga ggtttttgtg
      121 atcaaaaact tcggcttcgg attgacgtac aagcacggcg agagtgcgcc gaagttcaaa
      181 ccgattcaca gttttggagg tacactcacg gttcgtttcg gtcccgagtg aaggttatga
      241 ctatgaaaac gatgcccgct ctttcgctgg tcggcatatt gatttgctgt gtaacaactc
      301 tagccgcgtc cgctgcacct caacgttaag tgattgaagt gatgccattg ttggaagtga
      361 tcgcgtgttc ggttgcggat gcaatcgagg cggagaaggg cggagccgga cggcttgaga
      421 tcgtgagaga tctgaagcga gggggattga cgccgccgtt cgagttggtc caggagatca
      481 aacagcgtgt cggtctgccg ctgcgtgtga tgttgcggga gaatgacgga ttcgagactc
      541 gtgacgatga gatcgatcgc ctttgtgttg ctgcggagcg gtttgcttcg atcgaggttg
      601 atggttttgt gcttggattt ttgaagaatg gcgatgttga tgtcaaacgg acacaacgtg
      661 tgctcgcctg cgcgccgcac atcagagcga cttttcacca tgcgttcgaa gctgcgacgg
      721 ataggctacg cgcgttgagt gcgatcaagc agttgccgca ggttgataga attctcagta
      781 gcggtggaac agacgatctg ggttcgcgag tgcaacggct cggcgaatat tcagaagccg
      841 ccgcgcccga actgataatc ctcgcgggcg gtggtatcga cagcgattcg atgatcaaca
      901 tcggacgcga gacacgcatt cgagagtttc atgtcgggcg cgccgcacgc gctcagttcg
      961 atgtcgaagg cggagtgcaa gcgtcgctgg tgagtggtct ggtccagaag ctgaaagaaa
     1021 tttcctgagt caatcgcaaa attcggaggc tacgtgaagc tgcgttccgg aagtcgcccc
     1081 aaggtttacg aaattgctgc gttacttttc ctgctgattg ttattggtct tcaagtgttc
     1141 ttttcggtgc gaagagaatc gcaaacgtgg gatgagggga atcacatctt taccggatat
     1201 cgcacgtgga ctcatgccga ttttggactc aatcccgaac acccgccgct ggtgaaactg
     1261 ctcacgaccg taccgctgtt gtcgttacag ccgaagtcgc ccgcgcttga agagcgtttc
     1321 ttcaaagagg acgcctttct gcgcggcaag gaatttctct atcagaatga cgcggaccag
     1381 attctctcgc gcacgcgcac cgctgctgca actctgacct tgctcgccgc gctggttgtc
     1441 ttcttcggaa cgaaagagat gtttgggacc ggtgccgctt tcattgcact cgcgctgctt
     1501 gctttcgatc caaaccacct ggcccacggc gcgcttatca ccaccgacgt ggggctggcg
     1561 tgcttcatgt ttctcgcggt ttttatgttc taccggtttg tgaagtctcc gtctgcactg
     1621 cggctgatcg tggcgggagt ctcggtggga cttgttttgg ccgtcaaaca caccggtcta
     1681 ctaatactgc cgattctgtt cttactcacg ctttgcgaga tggttcttaa cagagcgact
     1741 gccaatcgag gcgggcaggt gctgaagctg ttcggttcgc tggcgatgat cgcgctgatc
     1801 gggtggatgg ttctatggtc cttttacggc tttcgctacg ccgcacggcc agatggtctg
     1861 caactgaatc cgttgctggc cgattacgtc aaagggttag aaccgtacga agcgtggccc
     1921 atctcgacag catctcgctt ccgtctgctt cctgagtcgt atctctacgg tttagtcgac
     1981 gtaaaactca cggcgaacta ctacacgagc tacgtcctcg gcaaagtgta cgcacacggc
     2041 gtttggttct actttccgat tgctttcctg gtcaaatcaa cgattggcgt gttggcactg
     2101 tttctgttga cactcggtgt cattgcggtg cgccgtctga accacgcgcg cgagatcctg
     2161 ttcctggccg ttccggtgat cttttacctg ctggttgctt tgactgtcgg gatgaacatc
     2221 ggcgtgcggc acattctcgt tgtttacgtc tttctctatg tgcttatcgg cggcgccgcc
     2281 tgggccttga tccgcatgag ccggaagtgg gcctacgttg ttggcgtgtt gctgttggtc
     2341 catgtggctt cgtctgtggc ggcctttccg aactacatcc cttacgcaaa tgagctctgc
     2401 ggcggaccgt cgcagacaca caag
//
LOCUS       DASWTX010001383         3391 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_63976, whole genome shotgun sequence.
ACCESSION   DASWTX010001383 DASWTX010000000
VERSION     DASWTX010001383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3391)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3391
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63976"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..296)
                     /locus_tag="VGD38_21005"
     CDS             complement(<1..296)
                     /locus_tag="VGD38_21005"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY0730578.1"
                     /translation="MADILLVEDKDSLRRVLRLTLENAGYTVAEAVDARTALNEIANS
                     RHRLVLTDLRMPNGSGLDVLRAARSADADVPVIVMTAFGSIDEAVQAMKDGAHD"
     gene            complement(922..2187)
                     /locus_tag="VGD38_21010"
     CDS             complement(922..2187)
                     /locus_tag="VGD38_21010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly PilX N-terminal domain-containing
                     protein"
                     /protein_id="HEY0730579.1"
                     /translation="MMRQPKRVSDRHGEKGAALVISILIATLLLAVAGTVILTSGMSA
                     VTSIDATAELQAYYGAESGLEATLNVLRGHVQPNGIAGTTRIGFRNAVDLSKSNRSSD
                     TSTVARLSAWLNYDNDGRVRPAGANYSYSVTVTDPDDPNGTTRNANAAYRPSRIQVQS
                     TGYGPNGSVKRMEMIVQKTSFDFEPDAMLLMRGADDGSPATMSFDIGSSNSKFYSGHD
                     NAGVVGSLPTFGVTTAGDLAVANDAITKGATVDDVKTAQVGVGELPSWLQTADGARKF
                     LNDMQVVARSHGRYYTSFSGQAGTTANPAFTFVNGNATLDGGAGLMIVTGNLVLNGNP
                     SFNGVILVLGEGTVNRDGGGNGNIYGSIYVARFARSWPASENGLPHPFLAPIFHTDGG
                     GTANLEYDSVWVQKAKDALGDIVRDVREY"
     gene            complement(2207..2890)
                     /locus_tag="VGD38_21015"
     CDS             complement(2207..2890)
                     /locus_tag="VGD38_21015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HEY0730580.1"
                     /translation="MNTKLNSQRGFSLIELIIAMTVTVVIATIASSLVAQSFRMRARE
                     DVRSDAIADAHRALNIVSREIANSGFGLIDNGIVPGDTGPGSIRFRANLNAYTRDSSG
                     NPVSGATSVSDRDEDIKYTMYNDDAANRHYLVRYDAILGAVDQREGTTVLANRLDSFQ
                     LQYFDSTNAELDVATTPSAVINAWKVRITVGVILPAEGQPGETGYQPQSVINLVSDVV
                     LRNTSQITF"
     gene            complement(2904..>3391)
                     /locus_tag="VGD38_21020"
     CDS             complement(2904..>3391)
                     /locus_tag="VGD38_21020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730581.1"
                     /translation="QRDGHKLMIQLEENEMQHSVESQRKPRQEKGFTLLETATALLVM
                     MIGGLGICAVFAYAIKNNTGSRDRAAAIAVAQQRMERYRQLTFLDTGLTAGPTTTETV
                     ESAGRTYQVRTTITNTTTSLKTISIEVTPLLSTDPWALGTVRISVQRSAFSLGPYSGG
                     T"
BASE COUNT          660 a         1014 c         1021 g          696 t
ORIGIN      
        1 aagtcgtgag cgccgtcttt cattgcctgg acggcttcgt cgatcgagcc gaaggcggtc
       61 atgacgatga cggggacgtc ggcgtcggcg ctgcgtgcgg cacgcaggac gtcgaggccg
      121 gagccgttcg gcatgcgcag atcggtgagt acgagacggt ggcgcgagtt ggcgatttcg
      181 ttgagagcgg tgcgggcgtc gacagcttct gcgacagtgt aaccagcgtt ctcgagagtc
      241 aatcgtagta cgcggcgaag gctgtctttg tcttcgacaa gtaggatatc ggccatccgt
      301 gggacagtat cccgcaaagc cgcacggacg gaaagggttt ttgtaggttg ggtatgaaag
      361 atccaccgac tgcgtcggtg ggattgttgc gctgcggtgg cgttgggtag gtggggtatg
      421 aaaagtacca ccaactaagt tggtgggatt ctcagacgca gcttcaagcg agttgtgaca
      481 cggttacgcc gccggggtga gcggtgtgca ggcgcggttg tgatgcggct acgccgccgg
      541 atgtgaggcg aggctatgcc tcgccggaga agtctgagaa gaaaatgggg ctacgcccct
      601 ggtacggcct ctggcccatc aactttgggg gcacagcccg aaccaggggc acagcccctc
      661 tcctcttttt tcggcgcctc cggcaaggcg tagccttgcc tcacatccgg cggcgtagcc
      721 gcaacacagc tgcgcttggt tcttagcctg cctccagtga tagtcctcgg aaagcggcgt
      781 cagagaatcg ccttcggcgg cgcagccgcc ttacgggacg acactcgacg gcgaagccgc
      841 gaaacgacgc tactcgaacg acggtactcg aacgacacca ctcgaacgac gctactcgaa
      901 cgacgctact cgaacggcgc cctaatactc gcgcacgtcg cgcacgatgt cgccgagggc
      961 gtctttggct ttctggaccc agacggagtc gtattccaaa ttcgcggtgc cgccgccgtc
     1021 cgtatgaaag atgggcgcca ggaagggatg tggcaatccg ttctcactcg cgggccacga
     1081 gcgcgcgaag cgcgcgacgt agatcgagcc gtagatgttg ccattgccgc cgccgtcgcg
     1141 attaaccgtg ccttcgccga gcaccagaat cacgccgttg aaactcggat tgccgttcag
     1201 cacgagattg cccgtaacga tcatcagccc cgcgccgccg tcgagcgtgg cgttgccgtt
     1261 cacaaacgta aacgccggat tagcagtggt tcccgcctgt ccgctgaaac tcgtgtaata
     1321 acgcccatgg ctgcgcgcaa cgacctgcat gtcgttgaga aacttccgcg cgccatccgc
     1381 agtctgcaac cacgaaggca actcgccaac gcccacctgc gccgtcttaa catcatcaac
     1441 cgtcgcgcct ttcgtgatcg catcattcgc caccgccaga tctcctgcgg tggtaacgcc
     1501 aaacgtcggt agcgatccca ccacacccgc attgtcgtga cccgagtaaa acttcgagtt
     1561 actgctgccg atatcaaacg acatcgtcgc cggtgaaccg tcgtcagcgc cgcgcatcaa
     1621 caacatcgca tcgggctcga agtcgaacga cgtcttctgc acgatcattt ccatccgttt
     1681 caccgaaccg tttggtccat atccggtcga ctgcacctgg attcgcgacg gccggtaagc
     1741 cgcgttggcg ttgcgagtgg tgccgtttgg atcgtcaggg tccgtcaccg tcacactgta
     1801 agagtagttc gcgcccgcgg gcctgacgcg cccgtcgtta tcgtaattga gccacgcgga
     1861 aagccgcgcg acagtcgacg tgtcgctgct gcgattcgac tttgaaagat cgacagcgtt
     1921 gcgaaagcca atgcgcgtgg tgccggcgat cccgtttggt tgaacgtgcc cgcgcaggac
     1981 gttcagcgtt gcttccagtc cgctctccgc gccgtagtac gcctgcaact ccgcggtcgc
     2041 atcgattgac gtaaccgccg acataccgct cgtaagaatg actgttccgg ccaccgcgag
     2101 cagcaacgta gcgatcagaa tgctgatcac tagtgccgca cctttttcac catgtcgatc
     2161 ggaaactctc tttggctgac gcatcattgt cgtagacctc atccgattaa aaagtgatct
     2221 gacttgtgtt acgcaaaacc acgtcggaaa cgagattgat aactgactgc ggctggtaac
     2281 cggtttcgcc cggttgtccc tcggccggca ggatcacgcc gacggttatc cgcaccttcc
     2341 acgcgttaat gaccgcggag ggtgtcgtgg cgacatccag ttcggcgttg gtgctgtcga
     2401 aatactggag ttgaaaactg tcgagccggt tcgccagcac ggtcgttcct tcgcgctggt
     2461 ccaccgcgcc gagaatcgcg tcgtaacgaa cgaggtagtg acggttcgcg gcgtcgtcgt
     2521 tgtacatcgt gtacttgatg tcttcgtcac gatcgctgac cgaggtcgcg cccgaaaccg
     2581 gatttccgga cgagtcgcgc gtgtaggcat tcaggttggc gcgaaagcgg atcgagcccg
     2641 gaccggtatc gccgggaacg atgccgttgt cgatcaaacc aaaacccgag ttggcgatct
     2701 ctcgcgacac gatattgagc gcgcgatgcg cgtcggcaat cgcgtccgag cgcacgtctt
     2761 cacgcgcgcg catgcgaaac gactgcgcca ccagcgagct cgcgatcgtc gcgatgacaa
     2821 cggtcaccgt catcgcgatg atcagttcaa tcagcgaaaa gccgcgttgc gaattgagtt
     2881 tcgtgttcat cacgtcgacc tttttatgtg ccaccggaat aaggacctaa agagaacgcc
     2941 gagcgctgca cgctgattcg caccgtgccc agtgcccatg gatcggtgct caaaagcggc
     3001 gtcacctcga tagaaatcgt cttgagcgaa gtggtggtgt tggtaatcgt ggttcgtacc
     3061 tggtacgtgc gtccggcgct ctcgactgtc tccgtggtcg tgggtccggc ggtcaaaccc
     3121 gtatcgagaa acgtcaactg gcgataacgc tccatgcgtt gctgcgcgac ggcaatcgcg
     3181 gcagcgcggt cgcgcgagcc ggtgttgttc ttgattgcgt aggcaaacac cgcgcagatg
     3241 ccgaggccgc cgatcatcat gaccagcagc gccgtggccg tttccaagag ggtgaagcct
     3301 ttttcctgcc gcggctttcg ttgcgattca actgagtgct gcatctcgtt ctcctcaagc
     3361 tggatcatca gtttgtgacc gtcacgctga c
//
LOCUS       DASWTX010001384         1675 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_259499, whole genome shotgun sequence.
ACCESSION   DASWTX010001384 DASWTX010000000
VERSION     DASWTX010001384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1675
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259499"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            44..>1675
                     /locus_tag="VGD38_21025"
     CDS             44..>1675
                     /locus_tag="VGD38_21025"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEY0730582.1"
                     /translation="MVQLELFNPASGKEELVESDPLKRVDFGNAIFSEVSDQLIATTY
                     DDERQRIYWKDKAFEADYKHLQKQLPGKEIGFGSSTKDEKLWLISANADTDPGATYLY
                     DRTTKKLTLQYQVREKLNRAYLAPMKPVRYQSSDGLEIPAYLTLPKGVEAKNLPAVIV
                     PHGGPWYRDSWGYDAFAQFLANRGYVVLQPNFRGSTGYGKKFIDSGNKQWGDKMQDDV
                     TWGAKYLIAEGIADPKKIGIMGGSYGGYATLAGVAFTPDVYAAGVSIVGPSNLITLLE
                     SIPPYWEQIRKLFYERMGDPNTPEGKAQLLRQSPLTAAAKIKTPLLVIQGANDPRVTK
                     RESDQIVIALRDRGFPVEYMVAPDEGHGFARPENNMAMFALAEKFLAKYLGGRYQESM
                     TPPVSQRLKEITVDVKTVTLPKAISSTSEVPKPAVDLRPGTHNYKASIAIAGQEIPLT
                     LKTDIKEENGAWTVNETAQTPQGPIVDVSTIEKGSLLLKRRYIQQGPMTIEMNVAPDK
                     LSGSTTMNGQAKPIDADPGGALFADGAGTFEVIASL"
BASE COUNT          401 a          481 c          476 g          317 t
ORIGIN      
        1 cgaacgagtt tacttccaca caaacaaggg cccgggcatc gacttggttc agctcgaact
       61 cttcaaccct gccagcggta aggaagagtt ggtggaatcg gatccgctga agcgcgtcga
      121 cttcggcaac gcgatcttct cggaagtctc cgatcagttg atcgccacga cctacgacga
      181 cgagcgccag cgaatctact ggaaagacaa agctttcgaa gccgattaca agcacctgca
      241 gaaacaactt cccggcaagg agatcggttt cgggtcttca actaaagacg aaaagctgtg
      301 gctcatctcc gccaacgccg ataccgatcc cggcgcgact tatctctacg atcgcaccac
      361 caagaagctg acgcttcagt accaggtacg cgagaaatta aaccgcgcct atctcgcgcc
      421 gatgaagccc gttagatacc aatcgtctga cggtttggaa atcccggctt atctgacgtt
      481 gcccaagggc gtcgaagcca agaaccttcc cgcggtgatc gttccgcacg gtggtccatg
      541 gtatcgcgac agttggggct acgatgcgtt tgcgcagttt ctcgcgaacc gtggttacgt
      601 tgtgctgcaa cccaacttcc gcggctcgac cggttacggc aagaagttta tcgactccgg
      661 aaacaagcag tggggcgaca agatgcagga cgacgtcacg tggggcgcga agtatctcat
      721 cgccgaaggc atcgccgatc cgaagaagat cggaatcatg ggcggatcat acggcggcta
      781 cgcgacgctc gcgggtgttg cctttacacc cgacgtttac gcggcgggcg tctcaattgt
      841 tggaccatca aacctgatca cgctgctcga atcgattccg ccgtactggg aacagattcg
      901 caagctcttc tacgagcgca tgggcgatcc gaacacgcct gaaggaaaag cgcagttgct
      961 gcgccagtcg ccgttaacag cggccgcaaa gatcaaaacg ccgctgctcg tgattcaggg
     1021 cgccaacgac ccgcgcgtta cgaaacgcga atcggatcag attgtgatcg cgctgagaga
     1081 tcgcggattt ccggttgagt acatggtcgc gccggatgaa ggtcacggct ttgcgcgacc
     1141 cgaaaacaac atggcgatgt ttgccctcgc cgagaagttt ctcgcgaagt atctcggtgg
     1201 ccgttaccag gaaagtatga ctccgccggt ttcacaacgt ctgaaggaaa tcaccgtcga
     1261 cgtgaagacg gtgacgttgc cgaaggcgat cagttcgacg tcggaagttc cgaagcccgc
     1321 ggtcgatctg cgtccgggca cgcacaatta caaggcttcc atcgccattg ccggacagga
     1381 aattccgctc accttgaaga cagacatcaa ggaagaaaac ggcgcgtgga ccgtcaacga
     1441 aactgcgcag actccgcaag gtccgatcgt cgacgtcagc acgatcgaaa aaggaagctt
     1501 gctgctgaag cgccgctaca tccagcaagg tccaatgacg atcgagatga acgtcgcgcc
     1561 ggataagctc agcggctcca cgacgatgaa cgggcaagcc aaaccgattg acgccgatcc
     1621 aggcggtgcg ttgtttgctg acggcgcggg cacgtttgag gtgatcgctt ccctt
//
LOCUS       DASWTX010001385         3163 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_85277, whole genome shotgun sequence.
ACCESSION   DASWTX010001385 DASWTX010000000
VERSION     DASWTX010001385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3163
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85277"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..303
                     /locus_tag="VGD38_21030"
     CDS             <1..303
                     /locus_tag="VGD38_21030"
                     /inference="COORDINATES: protein motif:HMM:NF013811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730583.1"
                     /translation="TLYEYFITDKVGHAQDMDAARLVLTSLALFLRETLIRLDRERTT
                     VILTSDHGNIEDLSIRNHTLHAVPTIVWGAQRERIATRIRNLADITPAIVSLLTNK"
     gene            300..1640
                     /locus_tag="VGD38_21035"
     CDS             300..1640
                     /locus_tag="VGD38_21035"
                     /inference="COORDINATES: protein motif:HMM:NF023128.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY0730584.1"
                     /translation="MNDKNNPREIFGWKMYDWANSAFYTTVVGALFSPYITRLAQTAV
                     GENGVVLDLGPLGEVTAKSLPTLCVSISVGLQVFLLPILGALGDYSDLKKRLMALFCY
                     IAVIANCLMFFITDGWYLWGGVLFIIANVCFGASIVFYNAFLPEIVTDDQTDKVSSRG
                     YAYGYLGGALLLVLNFLLVQNAESFGISTGLAVRLSLLSSGVWWGGFALITFSLLRSR
                     PQKKSLPPGMGYVRAGFAEIGATFKELRRLPLTLRYLIAYLIYNDGIQTVIFASSAFL
                     EQELFPGGNPAFLLKIFLRVQFVAVAGALLFERLAYLSKTKNAIIVSLIIWAAVVIYA
                     YRFLNTEAEAWVMAGVIAIVLGGSQALSRSLFSRMIPAGKEASFFGLYEVSERGTSWM
                     GPLLFSIVIARTGSYRQALLSLIFFFVVGLIVLAITNTDKAIQQASVPSSQSSS"
     gene            complement(1597..1902)
                     /locus_tag="VGD38_21040"
     CDS             complement(1597..1902)
                     /locus_tag="VGD38_21040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730585.1"
                     /translation="MKYLIIAALVSIAFVLIYSRVRPYLKLIRKVVESLNVATESTVT
                     TASQQRSPSKNKLVRCDSCGTWIPAERALHLGSGLASFCSTECVTKSSETKERKLAG"
     gene            complement(1903..2193)
                     /locus_tag="VGD38_21045"
     CDS             complement(1903..2193)
                     /locus_tag="VGD38_21045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730586.1"
                     /translation="MANRKGVFIGAYVPNHLKESLRRRAAAEHRTLSQEITRILEEAV
                     HGRGLPPGSLDRRTKESQPRRRATDPMPRRRATDAPYVGAGGNNRSGDERRS"
     gene            complement(2237..2662)
                     /gene="rnpB"
                     /locus_tag="VGD38_21050"
     ncRNA           complement(2237..2662)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="VGD38_21050"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(2717..>3163)
                     /locus_tag="VGD38_21055"
     CDS             complement(2717..>3163)
                     /locus_tag="VGD38_21055"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HEY0730587.1"
                     /translation="LGFRTDNFLAAAKLLVLPTIAAVVAIVIFSGQYQPREPGRWRFL
                     LVPLWALFQQYVLQGYLNRRAQIIFGPGWKSVALTAFLFALVHLPNPLLFVLTLAGGS
                     IWSVIYQKQPNLYAIALSHAVTSISVAVFLPPAWANNLRVGFKFFG"
BASE COUNT          642 a          907 c          881 g          733 t
ORIGIN      
        1 acgctatacg agtacttcat cacggacaag gtcgggcacg cgcaggacat ggacgcagcc
       61 aggttggttt tgacaagtct cgcgctcttc ttgcgagaaa cgttgataag acttgatcgg
      121 gaaagaacta ccgttatact caccagcgac cacggcaata tcgaagatct atcgatacgc
      181 aatcacacac tgcacgcagt accaaccatc gtttggggcg ctcaacgtga acgaattgcg
      241 accaggatta ggaatctcgc cgacataacg cccgccatcg tctcgttgct gactaacaaa
      301 tgaacgacaa gaacaaccca cgcgagatct ttggctggaa gatgtacgac tgggccaact
      361 ccgccttcta caccactgtc gtcggcgcgc tgttcagccc gtacatcacg cggctggccc
      421 aaacggctgt cggcgagaac ggcgtggtcc ttgatcttgg tccactcggc gaagtaaccg
      481 ccaaatcgtt gccgacactc tgcgtctcga tctctgtcgg gctacaggtc tttctgcttc
      541 caatcctcgg cgcgctcggc gattactccg atctgaagaa gcgtttgatg gcgctgttct
      601 gttacatcgc cgtcatcgct aactgcctga tgtttttcat cacggatggt tggtatctgt
      661 ggggcggcgt gctgttcatc atcgccaacg tctgctttgg cgcttcgatc gttttttaca
      721 acgccttttt gccggagatc gtcaccgacg atcagaccga caaggtgtcg agccgcggat
      781 acgcgtacgg ctatctcggc ggcgcgctgc tgcttgtttt gaattttttg ctcgtgcaga
      841 acgccgagtc gttcgggatc tctaccggtc tcgccgtgcg gttatcgctt ctatcgtcag
      901 gtgtttggtg gggtgggttt gcgctgataa ctttttcgct gctgcgctcg cggccgcaaa
      961 agaaaagttt gccgcccggc atgggttacg tccgcgcggg ttttgccgag atcggcgcga
     1021 cgttcaaaga gctgcggcgc ctgccgctga cattgcgtta cctgatcgct tatttgatct
     1081 acaacgacgg cattcaaacc gtgatctttg cctcgagcgc ctttctcgaa caggaactct
     1141 ttccaggcgg caatcccgca tttctgttga agatctttct acgcgtgcag tttgtggcgg
     1201 ttgccggcgc cctgctcttc gaacgactcg cttacctgag caaaacaaaa aacgccatca
     1261 tcgtgtcgct cataatctgg gcggcagtcg tgatctacgc ttatcgcttt ctcaacacgg
     1321 aggcagaggc gtgggtcatg gccggagtga tcgccatcgt gctcggcggc tcgcaagcgc
     1381 tctcacgttc gctgttctcg cgaatgattc cggcaggcaa ggaggcgagc ttcttcggcc
     1441 tgtacgaggt ttccgaacgc ggcacgtcgt ggatgggacc gctactcttc agcatcgtga
     1501 tcgcacgcac cggttcctac cggcaggcgc tgctgtcgct gatcttcttc tttgtcgtgg
     1561 gattaatcgt gttggcgatt acgaatactg acaaggctat ccagcaagct tccgttcctt
     1621 cgtctcagag ctcttcgtaa cgcactccgt cgaacagaaa ctcgcgaggc cggagcccag
     1681 gtgcagcgcg cgctcggccg ggatccacgt gccgcaacta tcgcagcgca cgagtttgtt
     1741 tttcgacggc gaacgctgct ggctcgcggt cgtcacggtg ctttcagtcg cgacgttgag
     1801 cgactcaaca accttgcgga ttagcttgag gtaaggccgg acacgggaat agatcagcac
     1861 gaaagcgatg ctaaccagcg cggcaattat caggtacttc aactagcttc gtctctcatc
     1921 acctgatctg ttgttgccgc cagcgccaac atacggcgca tcggtagcac gtctgcgagg
     1981 catcggatcg gtcgcgcgac gccgaggttg ggattccttc gtgcgtcgat caagactccc
     2041 cggaggcaaa ccacggccat ggactgcctc ttccaggatg cgggtaatct cctgcgagag
     2101 tgtgcgatgt tcggcggcag cacggcggcg aagcgattcc ttcagatgat tcggaacata
     2161 tgcgccgatg aagacccctt tgcgattagc catctaacgt caccctcact agccattgtc
     2221 gggatttacc ctgcaaattc tgaacaggtc tgtaagccga attctgtact ccgaaaaatt
     2281 cggagtggcg atcattcatc tagtccagcc gttgccggct ggctccagcg acctacccgg
     2341 aggtcgtagc ctgttaaggc ttcgggcggg cagccctgtt gacgcctccc tatttggtct
     2401 tgcactgcga ggagtttgcc tggccgcgca tgtcaccaca cgcgccggtg cgctcttaca
     2461 ttaagccctt gcgggccgca ccatttcacc catcactctt ttaatccgaa gattttaaag
     2521 agctggtttg ttttctgttg cacttgtcgt cgcccggcgg tctttcgacc gccaaacgcc
     2581 ccgccgttag cgggctcgct gccctgtagt gttcggactt tcctctcccg gcattgccgg
     2641 cagcaaccgc ccgacctgtt ctcttgcaag gcggggcgat tatagcaaac gggtgttcaa
     2701 acgggtatag cactaatcag ccaaaaaatt tgaacccgac acggaggttg tttgcccatg
     2761 ctggtggcag gaaaacagca acggagatcg aagtcactgc gtgagacagt gcgattgcat
     2821 acaaattcgg ctgcttttgg tagatcacgg accaaattga cccaccggcg agcgtgagca
     2881 caaacaagag tgggtttggc aaatgaacga gcgcgaacag gaaagccgtc agggctacgc
     2941 tcttccagcc tggtccaaag atgatttgcg cgcggcggtt caagtaaccc tgtaacacgt
     3001 actgctgaaa caacgcccac aacgggacca gcaagaatcg ccaacgcccc ggctctcgtg
     3061 gttggtactg accggagaaa atgacgatcg ctaccaccgc agcgatggtg ggtaggacca
     3121 ggagtttggc ggctgcgaga aagttgtcgg ttcggaagcc gag
//
LOCUS       DASWTX010001386         3661 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_430763, whole genome shotgun sequence.
ACCESSION   DASWTX010001386 DASWTX010000000
VERSION     DASWTX010001386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3661
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_430763"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1232)
                     /locus_tag="VGD38_21060"
     CDS             complement(<1..1232)
                     /locus_tag="VGD38_21060"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY0730588.1"
                     /translation="MQALPQDLKYGLRMLLRRPLLTIGISLSLALGIGANSAVFSLVD
                     AVLFRPMNVGDTSRLVSLYTSDYSGSQYGASSYADFVDFRDRTNVFESAAAFTDISAT
                     LKSETQADRANALLVSENYFDLLGVRAARGRTFHRDDTQPVLVVSHRFWQQRFGGDPA
                     LIGKTVLFNNNNFTVIGITPESFTGTDLGRSPEIFVSIQNYTQAGLEPGFTTSRGTRQ
                     FSIIGRLRPDVSEAQAQTSLDILSRQLAEAYPENWKERNQQTRRISVVAEHYARVPPE
                     VRSVLIGFAGLFTALVGLVLLIACSNISNMLLARATARQKEMAVRTALGASRGRLIRQ
                     LVTESLQLSLIGSILGILLAPVCIKLLITTFLPASTTGLPIDLGVNPRVIVITLAIGL
                     ITGLIFGLVPALHASRSDL"
     gene            1436..3007
                     /locus_tag="VGD38_21065"
     CDS             1436..3007
                     /locus_tag="VGD38_21065"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HEY0730589.1"
                     /translation="MTGKFYLPEITGSGAALFDFDNDGDLDVFLVQGNVLEPGTKPGE
                     TLLPWRGSEPPRGRLFRNDLTAGKEGRLTFTDVTQQSGIVANGYGMGAAVGDVNNDGL
                     PDLYLSNLGSNQLYVNKGGGKFIDVTKQSGADDVRWTTSASFLDYDRDGWLDLMLVNY
                     AEFSTANSPNCYAATTARDYCTPRVFRAPGNRLLRNKGHGVFENVTVSAGLDKEFGHG
                     LGVVTTDFNGDDWIDIYVANDGDHNQLWTNQKNGKFVNDALLAGAAVNRNGQAEAGMG
                     VDAADFDGNGADDIFITHLMDETNTLYVNLGEALFEDRTRESGLGMPGRRFTGFGTFF
                     FDYDNDGWLDIFAANGAVQLLPELVRRKDPFPLGQPDQLFRNTGKGGFVEVVDEVGPG
                     FQLLEVGRGAAFGDVDNDGDTDVLVTNNNGPVRLYLNQVGNRNHWLGLRLIDKSGRDM
                     LGAQVEIVVAKDRVLRRRVRTDGSYLSANDPRVLVGLGAVTRVPLVRVRWPDGMSDEF
                     KDLAVDKYTTLKRNR"
     gene            3004..>3661
                     /locus_tag="VGD38_21070"
     CDS             3004..>3661
                     /locus_tag="VGD38_21070"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY0730590.1"
                     /translation="MKLVFLIVFSVFAAQTAGDGGALQPPRKGLVAVHWPDLTKLEES
                     VREQVVTLQTELTATAKDPKVSDTALSEAYGKLGQIYHAYSLVSSARDCYLNAGALAP
                     KDFRWIYLLGKLDQQDGRFDDAIRRYQAARALRPDYVAVPVNLGNIFLEVNRLDEASE
                     SFRVALAIDENNPATHYGLGQVAMARRNYAEAVKHFEKTLAAVPGATRVHYSLAMAYR
                     G"
BASE COUNT          779 a          959 c         1161 g          762 t
ORIGIN      
        1 agatcgctgc ggctggcgtg cagcgcgggc acgaggccga agatcaaacc cgtgattaga
       61 ccaatcgcga gagtgatgac aatcacgcgc ggattgacgc cgaggtcgat cggaagtcct
      121 gtggttgaag ccggcaggaa agtcgtaatc aaaagtttga tacagaccgg cgcgagcaga
      181 attccgagga tgctgccgat cagcgatagt tgcaggctct cggtcaccaa ctgcctgatg
      241 agccggccgc gactcgcgcc gagagctgtg cgcacggcca tctctttttg tcttgcggtc
      301 gcgcgcgcga gcagcatgtt cgagatgttg ctgcacgcga tcaagagcac gagtccaacg
      361 agcgcggtga acagtcccgc gaatccgatc agcacgcttc tgacttccgg cggcacgcgc
      421 gcgtaatgtt cggcgacaac gctgatccgg cgtgtttgct ggttgcgctc tttccagttc
      481 tcgggatacg cctcggcgag ttgtcgcgac aggatgtcga ggcttgtctg cgcctgagct
      541 tcagacacgt caggtctcag gcgtccgatg attgaaaact gccgcgttcc gcgactggta
      601 gtgaagcccg gttcgagtcc ggcctgcgtg tagttctgta tggagacgaa gatttccggc
      661 gagcggccga gatcggtgcc ggtgaaactt tcgggcgtga taccgatgac ggtgaagttg
      721 ttgttattaa aaaggacagt cttgccgatg agcgcgggat cgccgccgaa gcgctgttgc
      781 caaaaacgat gactgacaac gagcacgggc tgcgtgtcgt ctcgatggaa agtgcggcca
      841 cgcgcggctc taacgccgag cagatcgaaa tagttttcgc taaccagcag cgcattcgca
      901 cggtcggctt gagtttcaga tttcagcgtg gcggaaatat ctgtaaacgc cgcggcgctt
      961 tcgaacacgt tggtccgatc gcggaagtcg acaaaatcag catacgacga cgcgccgtac
     1021 tgcgaaccgg agtaatcgct cgtgtaaagc gagacgagac gcgacgtgtc tccgacgttc
     1081 atcggtctga agagaaccgc atcgacgaga ctgaagaccg cactgttagc tccaatgccg
     1141 agcgcgagcg agagtgagat accgatagtc aacagcggtc tgcgcaagag catacgaaga
     1201 ccgtacttga gatcctgagg taaggcttgc atgtgtgcgt ctccctgggc ggagattatg
     1261 gcacactttc gacgagtgac tctcgacgat ttcttgagac acacgtgcgg ttgagataga
     1321 gttcacggcc tcgatcatga gtggaacaaa gttaatagct ctggtcctgt tgttcgcacc
     1381 aatattcacg gaggttgcgg aacaggttgg cctacgattc caacactaca acggaatgac
     1441 cgggaagttt tacctgcccg agatcaccgg cagcggcgcg gcgcttttcg attttgataa
     1501 cgatggcgac ctcgatgtct ttctcgttca aggcaacgtg ctcgaacccg gcacgaagcc
     1561 cggcgaaacg ctccttccgt ggcgcggttc ggagccgccg cgggggaggc tcttccgcaa
     1621 cgatctcacc gctggaaaag aaggacggct gactttcacc gacgtcactc agcaaagcgg
     1681 catcgtcgca aacggttatg ggatgggcgc ggctgttggc gacgttaaca acgacgggct
     1741 gcctgatctc tatctttcga atctcggttc taatcagttg tacgtgaaca aaggcggcgg
     1801 caagtttatc gacgtcacga agcagagcgg cgctgacgac gtacgttgga ccacgagcgc
     1861 gtcgtttctc gattacgatc gcgacggctg gctggacctg atgctcgtga actacgccga
     1921 gttttccacg gccaacagtc caaactgtta cgccgccacc accgcgcgcg actattgcac
     1981 gccgcgtgtc ttccgcgcgc ccggcaaccg gctgctgcgt aacaaaggtc acggcgtctt
     2041 tgaaaacgtt accgtgtccg cgggactcga caaagagttt ggccacggct tgggagtcgt
     2101 gacgacggat tttaacggcg acgattggat cgacatctac gtcgccaacg acggcgatca
     2161 caaccaactc tggaccaacc aaaagaacgg caagtttgtt aacgacgcgc tgctcgcggg
     2221 cgccgcggtg aacagaaacg ggcaggccga ggcaggcatg ggcgttgacg ccgcggactt
     2281 cgacggcaac ggcgccgatg acatctttat cacgcacctg atggacgaaa ccaacacgct
     2341 ctacgtgaac ctgggcgagg cgctctttga ggatcggacg cgcgagagtg gtttgggaat
     2401 gccgggacgc cgcttcaccg gctttggcac gttcttcttt gattacgaca acgacgggtg
     2461 gctcgacatc ttcgccgcga atggcgccgt gcaactgttg cccgaactgg tgcgcaggaa
     2521 agatccgttt ccgttgggcc aaccggatca gctctttcgc aatacgggta aaggcgggtt
     2581 tgtggaagtc gtcgacgagg ttggaccagg gtttcagctt ttggaggttg gccgtggcgc
     2641 tgctttcggg gacgtcgaca atgacggcga tacggatgtg ttggtaacga acaacaatgg
     2701 tccagtgcgg ttgtacttga accaggtagg caatcgaaat cactggttgg gactgcggct
     2761 gatcgataaa agcggccgag atatgttggg cgcgcaggtt gagatcgttg tcgcgaagga
     2821 tcgtgttttg cggcggcgcg tcaggactga cggtagttat ctttcggcta acgatcctcg
     2881 ggtattggtc ggattgggtg cggttactcg cgtaccactg gtccgagtgc gctggccgga
     2941 tggaatgagc gacgagttca aggacctggc cgtcgacaag tacacgacgc tgaaacgtaa
     3001 ccgatgaagt tggttttcct gatcgtcttt agcgtgtttg ccgcgcagac ggcgggggat
     3061 ggtggtgcgt tgcagccgcc gcgaaaaggt ctggttgcgg tgcactggcc ggacttgacg
     3121 aagttggaag agagcgttcg cgaacaggta gtcacgctac aaaccgagct gaccgccacc
     3181 gcgaaagatc cgaaagtatc agatacggcg ttgagtgagg cgtatgggaa gttgggacag
     3241 atctaccacg cgtattcgct cgtgtcttcg gctcgcgact gctacctgaa tgcgggcgcg
     3301 ttggcaccaa aagattttcg ctggatctat ctgctgggaa agttggacca gcaggacgga
     3361 cgtttcgacg acgcgattcg gcgttaccag gccgcgcgcg cgttgcggcc tgactacgtg
     3421 gcggtgccgg tgaacctggg aaatattttt ctcgaagtga atcgtcttga tgaagcgagt
     3481 gagagttttc gtgtagcgct ggcgattgat gaaaacaatc cggcaaccca ttacggattg
     3541 ggccaggttg caatggcgcg tcgcaactac gccgaggccg tcaaacactt tgagaaaacg
     3601 ctcgctgcgg tgccgggcgc gacgcgtgtt cactattcgc tggcgatggc gtatcgcggt
     3661 t
//
LOCUS       DASWTX010001387         1805 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_430770, whole genome shotgun sequence.
ACCESSION   DASWTX010001387 DASWTX010000000
VERSION     DASWTX010001387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1805)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1805)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1805
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_430770"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1805
                     /locus_tag="VGD38_21075"
     CDS             <1..>1805
                     /locus_tag="VGD38_21075"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEY0730591.1"
                     /translation="NEKQIRADTQASAAETATEDDVKRLLAHAESLRVTNSLLAARID
                     QLNLQTKYLMQDQKKVGPNLKDVRVKLRKEWVPHWLENPQAFRPGTKMPTFWRFAAPL
                     DEKHDMRDKDSAQQLQAIAAYLWQDSFNIKLPEQQRGDGNKGKQLFETRGCLACHSIG
                     EGDSKVGGDFAANLQRVGEKANFDYIVRWIHNPRERVAPYCPKHKRDLTHADYAEKNL
                     PFVFDTELHSRCPIDGAELQVQNMTVMPNFRLSEQDSRDIATYLFSLSSPPSYADASF
                     MDDASRKEKGRLLIKQYGCAGCHEIQGFEDEQRIGKELTVEGATPIERLDFALQTHHA
                     EHGDDPLKLRPDQPHKPWYNHKGFFERKIMQPSIYDEGKEKDPKDKLRMPQPYLTPEW
                     RVALTTFLLGSVGTEGSNVPSTLFYTPQDQRRQDIQNGWWVIKKYNCQGCHQIQVGEK
                     SVVQDLPFYQTPEGKDLLPPRLTSEGARVDPAWLLKFLHDPSLSGEKTPEQMRQINAL
                     AAPQASPSASPGAAASASLASNQAAKLPPQPGLDRNGVRPYLQFRMPTFNFSPNELQM
                     LVRFFMAMSGQQDPYIKEPLLPLTAQERVLARQLF"
BASE COUNT          401 a          511 c          558 g          335 t
ORIGIN      
        1 caacgagaaa cagattcgtg ccgacacgca agcgtccgcg gccgagaccg caaccgaaga
       61 cgacgtcaag cggttgctgg cccacgccga gagtttgcgc gtcacgaaca gtcttctggc
      121 ggcgcgaatc gatcagttaa acctgcaaac gaaatacctg atgcaggacc agaagaaggt
      181 tggcccaaac ctgaaagacg tgcgcgtaaa gttgcgcaaa gagtgggtgc cgcactggct
      241 cgagaacccg caggcgtttc gtcccggcac caagatgccg acgttctggc gctttgccgc
      301 tccgctcgac gaaaagcatg atatgcgcga caaggatagc gcgcagcagc ttcaggccat
      361 cgcggcgtat ctctggcagg acagcttcaa catcaagctt cccgaacagc aacgcggcga
      421 cggcaataaa ggcaagcagc tcttcgaaac gcgcggctgt ctggcgtgtc actcaatcgg
      481 cgaaggcgat agcaaggtcg gcggtgactt tgccgcaaac ttgcagcgcg tcggcgagaa
      541 agcaaacttc gattacatcg ttcgctggat tcacaatcca cgcgaacgcg tcgcgcctta
      601 ttgtccgaag cacaaacgcg atctgactca cgctgactac gcggagaaga atttgccgtt
      661 tgttttcgac accgaactgc actcacgctg cccgatcgat ggcgcggagt tgcaggtgca
      721 gaacatgacg gtgatgccga acttccgttt gtcggagcag gattcgcgcg acatcgccac
      781 gtatctgttc tcgctttcgt cgccgccgag ttatgccgac gcgtcattca tggacgatgc
      841 gagccggaag gaaaagggcc ggttgctgat caagcagtac ggctgcgctg ggtgtcacga
      901 gattcagggc tttgaagacg agcagcgcat cggtaaggag ttgacggtcg aaggcgcgac
      961 gccgatcgag cggctcgact tcgcgcttca gacgcaccac gcggaacacg gagacgatcc
     1021 gttaaagctg cggcccgatc agccccataa gccctggtac aaccacaagg gcttcttcga
     1081 gcgcaagatc atgcagccgt cgatctacga cgaaggcaag gagaaagatc cgaaagacaa
     1141 gctgcgcatg ccgcagcctt acctgacgcc tgaatggcgc gttgcgttga cgacgttcct
     1201 gctgggcagc gtgggcaccg agggatcaaa cgttccgagc acgctcttct acactccgca
     1261 ggatcagcgg cggcaggaca ttcaaaacgg ctggtgggtg atcaagaagt acaactgtca
     1321 gggttgtcac cagattcagg tcggagagaa gtccgtcgtg caggatctgc cgttctatca
     1381 aacgccggaa ggcaaggatt tgctgccgcc gcgtttgacg agtgaaggcg cgcgtgtcga
     1441 tccggcgtgg ctgttgaagt ttttgcacga cccgtcgttg agtggtgaga agacgccgga
     1501 acagatgcgg cagatcaatg cacttgctgc tccgcaggcg tcgccgtcag catcgccggg
     1561 tgctgccgcg agtgcgagtc tcgcgtcgaa tcaggcggcg aagttgccgc cgcagccggg
     1621 tctcgatcgc aatggcgtgc ggccgtattt gcagttccgc atgccgacgt tcaacttctc
     1681 gccgaacgag ttgcagatgc tcgtgcggtt cttcatggcg atgtctggcc agcaggatcc
     1741 atacatcaag gagccgctgc tgccgttgac ggcgcaggag cgagtgcttg cgcgacagtt
     1801 gttta
//
LOCUS       DASWTX010001388         1777 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_148172, whole genome shotgun sequence.
ACCESSION   DASWTX010001388 DASWTX010000000
VERSION     DASWTX010001388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1777
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148172"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..601
                     /locus_tag="VGD38_21080"
     CDS             <1..601
                     /locus_tag="VGD38_21080"
                     /inference="COORDINATES: protein motif:HMM:NF014398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0042279 - nitrite reductase (cytochrome,
                     ammonia-forming) activity [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HEY0730592.1"
                     /translation="GLQIENILAFYDEQKFKDWEHASTGAPVLKAQHPEFEMWNQGIH
                     ARSGVACADCHMPYKREGALKISDHHVRSPLLNINRACQTCHKWSEEELKARVETIQT
                     RTYNLRNLAMDALVDLINDIKAARDAGRNDAAVTTAQDFQRRAQFYVDFIESENSNGF
                     HASQEAARILGESINFSRKGQVALRGGAQPSQATTAQNK"
     gene            617..1342
                     /locus_tag="VGD38_21085"
     CDS             617..1342
                     /locus_tag="VGD38_21085"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEY0730593.1"
                     /translation="MSSFRVTTYNIHKCRGLDRRVRPKRIASVLKEIGADVVALQEVV
                     GMDEVERERNQVRAIAEELDADFRIGENRRIHGAAYGNAVLSRLPIVTEHNHDLTWRK
                     YEPRGCLEVAVAIDAQTTLQTFNVHLGTSFFERRYQGHRLLEVIAGDADSPTPRVILG
                     DFNEWTRGLTTRLLSLHLNSAEPEQRLGRARTYPGVFPILHLDHVYYNSSLKLERIFV
                     HRSRLALAASDHLPIVADFTLAR"
     gene            complement(1326..>1777)
                     /locus_tag="VGD38_21090"
     CDS             complement(1326..>1777)
                     /locus_tag="VGD38_21090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730594.1"
                     /translation="LELDVVIEDIPFATQMQEMYLQDLENATEIVLDARHKVRAPDRS
                     AQAPTPMTSGGGSGGRAAAGAIRLGNAVGAAFTNRRVLEPVEARLMLMTGLLLFGLAL
                     IAWFFPSVVIYPLVVVLVWISLALLYRAYRLKTGREPQALPPFNERE"
BASE COUNT          385 a          536 c          520 g          336 t
ORIGIN      
        1 gggacttcag atcgagaaca tcctcgcttt ttacgacgag cagaagttca aagactggga
       61 acacgccagc accggcgcgc ccgtgctcaa agcacagcat ccggagtttg aaatgtggaa
      121 ccagggcatc catgcgcgtt cgggtgtcgc ctgcgccgac tgccacatgc cttacaaacg
      181 tgaaggcgcg ttgaagatca gcgatcatca cgtgcgttcg ccgttgctga acatcaatcg
      241 cgcgtgccaa acgtgtcaca agtggtctga ggaagagttg aaggcgaggg ttgaaacgat
      301 tcagacgcga acgtataacc tgcgtaacct cgcgatggac gcgctcgtcg atctcatcaa
      361 cgacatcaaa gccgcgcgcg acgcgggccg caacgacgcc gccgttacga ccgcgcagga
      421 tttccagcgg cgcgcacagt tctacgtcga tttcatcgag tcggaaaact cgaatggatt
      481 tcacgcgtcg caggaggctg cgcgtattct cggcgaatcg attaacttct cgcgtaaagg
      541 acaggtggcg cttcgcggcg gcgcgcaacc cagtcaggca accactgcgc agaacaagta
      601 agtccaagcg ttcaaggtgt cgtcatttcg ggttacaacc tacaacattc ataagtgtcg
      661 cggcctcgac cgccgcgtgc gtccgaagcg catcgcgtcg gtactgaagg agatcggcgc
      721 cgatgtggtc gcgcttcagg aagttgtcgg gatggatgaa gtcgagcgcg agcgcaatca
      781 ggtgcgcgcg attgccgaag agctcgatgc ggattttcgc atcggtgaga atcgcagaat
      841 ccacggcgcg gcttatggca atgcggtgct cagccggctt ccgatcgtta cggagcacaa
      901 tcacgatctg acctggcgca agtacgaacc gcgtggctgt ctggaagtcg ctgtcgcgat
      961 tgacgcacaa acgacgctgc aaacgttcaa cgtgcatctc ggcacgagct tcttcgaacg
     1021 ccgctaccag ggccaccggc ttttggaagt gatcgccgga gatgcggatt cgccgacgcc
     1081 gcgagtcatc cttggcgatt tcaacgagtg gacgcgcggc ctgacgacgc gcctgctgag
     1141 tcttcactta aacagcgccg aaccggaaca acgtctcggc agagcgcgca cgtacccggg
     1201 cgtgtttccg atcctgcacc tggaccacgt gtactacaat tcgtctctca aactcgaacg
     1261 catcttcgtt catcgcagcc gtctcgcgct ggccgcgtcc gatcacctgc ccatcgtcgc
     1321 cgacttcact ctcgctcgtt gaacggcggg agcgcttgtg gttcacgccc ggtcttgagc
     1381 cggtaagcac ggtaaagaag cgccagcgag atccagacca gcacgacgac caacggatag
     1441 atcactacgc tgggaaagaa ccacgcgatc aaagccaggc caaacaacag caatcccgtc
     1501 atcagcatga gccgcgcttc gacgggttcg aggacacggc gatttgtaaa cgccgcgccg
     1561 acagcgttgc cgagtctgat ggctccggcc gcggcgcgcc cgccactgcc gccgccactc
     1621 gtcatcggcg tgggcgcttg agcagatctg tctggtgcgc gcactttgtg ccgcgcgtcc
     1681 aaaactatct ccgtcgcgtt ttcgagatcc tgaaggtaca tctcctgcat ctgagtcgcg
     1741 aatgggatgt cttcaataac aacgtcgagc tcgagat
//
LOCUS       DASWTX010001389         1558 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_18454, whole genome shotgun sequence.
ACCESSION   DASWTX010001389 DASWTX010000000
VERSION     DASWTX010001389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1558
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18454"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..811)
                     /locus_tag="VGD38_21095"
     CDS             complement(<1..811)
                     /locus_tag="VGD38_21095"
                     /inference="COORDINATES: protein motif:HMM:NF028007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEY0730595.1"
                     /translation="MAHLKITDASGRQWQFSFVPQTACTIGRAPDNAVVLDDPRASRY
                     HAHINQAENGTFTIVDGAVVNGQLRRSANKVFINGEPRFEQQLKNGDRITIGASTLRF
                     EQPAEERTTDVRYDDKPLGHTQLLISANDVMSTVLRSKDEVTPDVKRDKVLEALQRKA
                     NILSALYEMSKTLGSVFDLNAIVDNATDIIFRSTPADRVVALIAEGPATNGEDVVLTP
                     VAMRARDNKLEAHARRLSIGRTITRKVMNDRVALLSQDAASDEQFAGVDSIV"
     gene            960..>1558
                     /locus_tag="VGD38_21100"
     CDS             960..>1558
                     /locus_tag="VGD38_21100"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY0730596.1"
                     /translation="MRSSARSALPTLLTCLCFAASVFAQSPGKQQVKTPRGSVSGRIT
                     IKSKPAPGVVVGLRKGAVENSFDPFIRAVTDAEGIYRLQNIPAGSYVITVVAPAYIPS
                     NSEDRKSVVLGEDENVEGINFSLVRGGVITGKVTDAEGHPVIQHQIEIFSLPALARRS
                     PQGPFPTITGQTDDRGIYRVYGIAPGSYKVAAGRSNFGG"
BASE COUNT          311 a          432 c          473 g          342 t
ORIGIN      
        1 aaacgatcga gtcaacgccg gcaaactgct cgtccgacgc agcgtcctgc gacaagagcg
       61 cgacgcgatc gttcatcact ttgcgggtga tggtccggcc gattgagagc cggcgcgcgt
      121 gtgcttcgag tttgttgtcg cgcgcgcgca tcgcgaccgg cgtcaggaca acgtcttcac
      181 cgttggttgc cggtccttcc gcgatcaatg cgacgacgcg atccgccggc gtcgaacgaa
      241 agatgatgtc ggtggcgttg tcgacgatgg cgttcagatc gaaaacagag ccgagcgttt
      301 tgctcatctc gtaaagcgcg ctcaggatgt ttgccttgcg ttgcagagct tcgagaactt
      361 tgtcgcgttt cacgtcaggc gtgacttcgt ccttggaccg cagcacggtc gacatcacgt
      421 cgttcgcgga gatcagcagt tgtgtgtgac cgagcggttt gtcgtcgtaa cgaacgtcag
      481 tcgtgcgctc ttcggctggt tgttcgaagc gcaacgtgct ggcgccgatg gtgatgcgat
      541 cgccgttttt gagttgctgt tcgaaacgcg gctcgccgtt gataaagact ttgttagcgc
      601 tgcggcgaag ctgtccgttg acgactgcgc cgtcgacgat cgtaaacgtt ccgttctctg
      661 cctggttgat gtgtgcgtga taacgcgaag cgcgtggatc atctaaaacc accgcattgt
      721 ccggcgcacg gccgatcgtg caggcggtct gaggcacgaa cgaaaactgc cactgacggc
      781 cgctggcgtc ggtgattttg agatgagcca tggagcgcga tcctaacagt agaatcttaa
      841 agctgacaac cgagaataat ttggtcgttg cgcgcggtgc gccacagcag tagatgaggc
      901 tttccacatg aacgaacctg cgctatgatg ccgcggccca ccagaatagg agcaactgta
      961 tgaggtcctc cgctcgcagt gcattgccca ccttgttgac gtgtctttgc ttcgctgcct
     1021 cggtgtttgc gcagtcgccg ggtaagcaac aggtgaaaac tccgcgtggt tctgtttcag
     1081 gccgaattac gatcaagagc aagccggcgc ccggcgttgt tgttggtcta cgcaagggcg
     1141 cggtcgaaaa ctctttcgat ccgttcatcc gcgcagtaac cgacgccgag ggaatctatc
     1201 gactacaaaa cattcctgcc ggaagctatg tgattaccgt cgtcgcgccg gcttacattc
     1261 cgagtaactc cgaggatcgg aaaagcgtcg tactcggcga ggacgaaaac gttgaaggga
     1321 taaacttctc gctcgttcgc ggcggcgtga tcacgggcaa ggtcacggat gccgagggac
     1381 atcccgtcat tcagcaccag atcgagatct tcagcctgcc tgccttggct cgccgatcac
     1441 cgcaggggcc gtttccgacg ataaccgggc aaacggacga tcgcggtatt tatcgcgtct
     1501 acggaatcgc accgggcagt tacaaagtcg cagccggccg tagcaacttc ggcggata
//
LOCUS       DASWTX010001390         2886 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_431018, whole genome shotgun sequence.
ACCESSION   DASWTX010001390 DASWTX010000000
VERSION     DASWTX010001390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2886)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2886)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2886
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_431018"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(92..1675)
                     /locus_tag="VGD38_21105"
     CDS             complement(92..1675)
                     /locus_tag="VGD38_21105"
                     /inference="COORDINATES: protein motif:HMM:NF024758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEY0730597.1"
                     /translation="MYFRMFKQTAAILALALSCSTAMAQTPAPSPKKPAPQVHVTQKR
                     PAPQVVTIVHRLNGLKMFRMLLRSQQQQVQAVTNLQSSFNLTDDVHANVIAGLAMDDG
                     ETIAAWLPEANLEFAPPGFSNAFNESQIPDFKFRLSDPPDVSVFGPDGRQLPAKYVGF
                     DATTGLSILRLEQKNSVSPGAAQDEPVAVGENVVLFGPEPATNNATNNAANNALNKTS
                     LLDNNNLYVRIGSIAGQIHSVLPAPTGEVARLRVSAPRLSHANIGGVALNEAGETVGI
                     VDGLLGNEATVLPTASIRRAAQRVLKSRSSVPRAWLGVRGEAVIALQLNQFLSHGWAA
                     ERAADLVGQHRGIMLTSIVPNSPAAQASLRAGDVILKVNDKEIQNADDFTWWLDQAGA
                     ATSVRFTVARPYQQAEEALNVKLSGILDPAAGYGFRSRFPLSKGLSLLEQGAETITLR
                     PAVANQLGTSAGLLVVYVEPSTPAAKAGLQAGDVIHSIDGKPISSFSRTTQLKPPMTL
                     EVMRVKEKLTVTLHPAAKN"
     gene            complement(1691..2464)
                     /locus_tag="VGD38_21110"
     CDS             complement(1691..2464)
                     /locus_tag="VGD38_21110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730598.1"
                     /translation="MKEKRCEPVRRELEELMLNDNFSAASTEHLRTCLECHEFHRQQT
                     KLRQIVGSLGTVSAPADFDFRLRARLAADAEAPSFRFWTFTVKGLATAAVLVVFGVGS
                     VMVWQRMDDPAPAVAVTQPPQVTSPEAGATADPNRAGNSMTFGVTNPSGADNSSIADN
                     QKAPSRQKPERPRIAHTPKRTVSTVDFSSERATVISNTSPAVDSATVFPIEASLQSVK
                     VSLDDGRGNARTISFPTVSFGSQRAMTNTANQFNSKGEW"
     gene            complement(2476..>2886)
                     /locus_tag="VGD38_21115"
     CDS             complement(2476..>2886)
                     /locus_tag="VGD38_21115"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY0730599.1"
                     /translation="VYRARDRYQRSYAFSTYIYRIATNLAISELRKRKRRKLVSLTGF
                     FQSTDGGEAKELNPPDGRPLQDSELVDQERRDAVQRAIGTLPEKYRAPLILRDVDGRS
                     YDEIAAILETSEGTVKSRISRARGFLREKMRAYL"
BASE COUNT          551 a          839 c          847 g          649 t
ORIGIN      
        1 tgaactttca gctaaatcgt ggtcggcgag caggtcgtga tagcgcgcga cagcctctgg
       61 gaacatagag gcgctaagcg tatcacaacg atcagttttt ggccgctgga tgaagagtga
      121 ccgtgagctt ttctttaacc cgcatgacct ccagcgtcat tggtggtttc aattgtgtcg
      181 tgcgactgaa ggacgaaatg ggtttgccgt cgattgagtg gatcacgtcg ccggcttgta
      241 gtcccgcttt ggcggcaggg gtggagggtt cgacgtagac aacgagcagg ccggctgagg
      301 ttccgagttg attggctacc gcgggccgga gagtgatcgt ttcggcgccc tgttccagta
      361 gcgagaggcc tttgcttaat ggaaaacgac tgcggaaacc gtaaccggca gccgggtcga
      421 gaatgccgct caacttaacg ttcagcgcct cttccgcttg ctgataagga cgcgcgacgg
      481 tgaagcgcac cgaagtggcg gcgcccgcct ggtccaacca ccacgtgaag tcgtcggcgt
      541 tctgaatttc cttgtcgttg accttcagaa tcacgtcgcc cgcgcgcagt gacgcctgcg
      601 ctgccgggct gtttgggacg atcgaggtca acattatgcc gcgatgttgt cctactaaat
      661 cggcggcccg ctctgctgcc cagccgtgac tgagaaactg attcagttga agtgctatga
      721 ctgcttcgcc tctgacgccg agccacgcgc gcggcacact cgaacggctc ttgagcacgc
      781 gttgcgcggc acggcgaatg gacgcggttg gaagcacggt cgcttcgttt cccagcaggc
      841 catcgacgat gccgacagtc tcacccgctt cgttgagtgc tacaccgccg atgttcgcgt
      901 gtgatagccg cggggcgctc acccgcagtc gcgcgacttc gccggttggc gcgggcagca
      961 cgctgtggat ctgacccgca atggatccga tccgcacgta aaggttgttg ttgtccaaca
     1021 gcgacgtctt gttcagcgcg ttgtttgccg cgttgtttgt cgcattgttt gtggcgggct
     1081 ctggaccaaa gagcaccacg ttctcaccaa ctgcaaccgg ctcgtcctgt gcagcgcctg
     1141 gcgacaccga attcttttgc tcgagccgca ggatcgagag accggtagtg gcgtcgaaac
     1201 cgacgtactt cgcgggcagt tgtctgccgt ctggtccaaa caccgacacg tccggaggat
     1261 cggaaaggcg gaacttgaaa tcgggtattt gagactcgtt aaatgcgttc gaaaaacccg
     1321 gcggcgcaaa ttcgagatta gcttccggca gccacgcggc aatcgtttca ccgtcgtcca
     1381 ttgcgagtcc ggcgatgacg ttggcgtgca cgtcgtccgt caggttgaag ctcgactgga
     1441 gattggtgac agcctgcacc tgctgttgct gcgatcgcaa caacatgcga aacatcttca
     1501 gaccattcaa acgatgcacg atagtcacga cctgaggcgc cggacgtttt tgagtgacgt
     1561 gcacctgcgg cgccggcttc ttcggcgagg gcgccggtgt ttgggccatc gccgtcgaac
     1621 aggacaatgc cagcgccagg atcgccgccg tttgtttgaa cattctgaag tacatcttac
     1681 ttaaatctgt ttaccactca cctttggaat taaattgatt tgccgtgttc gtcatcgcgc
     1741 gttgcgaacc aaagctcacg gtcgggaatg aaatcgttcg cgcgttgccg cggccgtcgt
     1801 cgagtgaaac tttgactgac tgcaacgatg cttcgatcgg aaacacggtt gcgctgtcga
     1861 cggctggaga tgtgttgctg atgacagttg cgcgttcgct gctgaagtcg accgtgctca
     1921 cggttcgctt tggtgtgtgt gctatccgtg gacgctcggg cttttgtcgc gacggcgctt
     1981 tctgattgtc agcaatcgac gagttgtcag cacctgacgg gttcgtcaca ccgaaagtca
     2041 tcgagttgcc cgcgcgattc gggtctgcgg tcgcccctgc ttcgggagac gtaacttgcg
     2101 gcggctgtgt aaccgcaact gccggcgcgg gatcatccat acgctgccaa accatcaccg
     2161 agccaacacc aaacaccacc agcaccgccg cggtcgcgag acccttcact gtaaaagtcc
     2221 agaaccgaaa gctcggcgcc tccgcgtcag ctgccaaccg cgcgcgtagc cgaaaatcaa
     2281 aatccgccgg tgcgcttacc gttccgagac tgccgacgat ctgccgcagc ttcgtctgct
     2341 gccggtgaaa ctcatgacac tccaagcacg ttcgcaagtg ctcggtggaa gccgcgctga
     2401 agttgtcgtt cagcatcagc tcttcgagct cgcgccgaac aggttcacat cgtttctctt
     2461 tcataattac ctcatctaca aataagcccg catcttttcg cggagaaatc ctcgcgcacg
     2521 gctgattctc gacttcactg tgccctcgct cgtttccaga atcgcggcga tctcgtcgta
     2581 actgcggccg tcgacatcgc gcaagatcag cggtgcgcga tatttctcgg gcagcgtgcc
     2641 gatggctcgt tgtactgcgt cgcggcgttc ctgatcgacg agttccgaat cctgcaacgg
     2701 ccggccgtcg ggcggattca gttcctttgc ctctccgccg tcggtcgatt gaaagaaccc
     2761 ggtcagcgaa acgagtttgc gccgtttgcg cttgcgcagc tcgctgatcg ccaggttcgt
     2821 cgcgatgcga tagatgtaag tcgaaaatgc ataacttcgt tgataacgat cccttgcgcg
     2881 atagac
//
LOCUS       DASWTX010001391         1621 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_431022, whole genome shotgun sequence.
ACCESSION   DASWTX010001391 DASWTX010000000
VERSION     DASWTX010001391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1621
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_431022"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..495)
                     /locus_tag="VGD38_21120"
     CDS             complement(<1..495)
                     /locus_tag="VGD38_21120"
                     /inference="COORDINATES: protein motif:HMM:NF012575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEY0730600.1"
                     /translation="MDSQADQISARPGTVTVPAKAAAPAKPVETVEATADPPVNKMRR
                     RIVWATVAGSLITFFLMFVRFFLPRSILEPSPLFRIGSPNDYALGVDTKWQQQYRIWV
                     TRTSDRLFVIYAVCTHLGCTPDWKASENKFKCPCHGSGYDSEGINFEGPAPRPMDRAK
                     VTLDA"
     gene            778..1032
                     /locus_tag="VGD38_21125"
     CDS             778..1032
                     /locus_tag="VGD38_21125"
                     /inference="COORDINATES: protein motif:HMM:NF017574.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
                     /protein_id="HEY0730601.1"
                     /translation="MTKPHVIVYSRPGCHLCDDAKLAIETAGCSDRFILEEVNIESDE
                     ELLRKYQYDIPIVLIDGVEAFRHRVDKDQFRGLVQVKFHG"
     gene            complement(1006..>1621)
                     /locus_tag="VGD38_21130"
     CDS             complement(1006..>1621)
                     /locus_tag="VGD38_21130"
                     /EC_number="6.6.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF014563.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cobaltochelatase subunit CobN"
                     /protein_id="HEY0730602.1"
                     /translation="ETFGATANVAYRLSADEYRRLCPYVREVEKDWGAVPSHIKIEGL
                     RLGNVFIGVQPTFGFEGDPMRMMMARSGSPTHGFMAFYTYLSKVLNADGVIHFGTHGS
                     LEFMPGKQIGLSGECWPDRLIDELPNFYVYSVNNPSEGSIAKRRSYAELISYLTPPIE
                     NAGLYKEFANLKELVMAYRESRSETERARLFESINQLAVELHLN"
BASE COUNT          354 a          438 c          465 g          364 t
ORIGIN      
        1 ggcgtccagg gtcaccttgg ctcgatccat cggtcgcggc gcggggcctt cgaaatttat
       61 gccttcgctg tcgtagccgc tgccgtggca cggacacttg aacttgtttt cgctggcttt
      121 ccagtcgggc gtgcagccga gatgcgtgca cacagcgtaa atcacaaaca ggcgatcgga
      181 agtacgagtg acccagatgc gatattgctg ctgccacttg gtatccacgc cgagcgcgta
      241 gtcgttcgga gagccgattc tgaagagcgg cgacggctcg aggattgagc gcggcaggaa
      301 gaaccgcacg aacatgagga agaaagtgat cagtgaaccg gcgaccgtgg cccagacgat
      361 gcggcggcgc atcttgttca ccggcggatc agccgtcgcc tcgacggttt ccaccggctt
      421 cgcgggtgca gccgctttcg cgggcactgt cactgtgcct ggtcgggcgg atatttgatc
      481 ggcttgacta tccaagtcga aacctccgtc acttcaattc ctttgtgggc gttgcgaact
      541 tccgtgggta cactgcgact ttgctaacag agagccgagt atagaactcc ccgtcgtaca
      601 gggagattac tctctgcgca gaaaagcaaa ttatttgctt aaacatgaag agcgccgcgc
      661 ctaacaaaaa acaatataat gtggtcggcg cgacatttat accctgtttc gcgattagct
      721 ggcaagaatt ttcctccata ttaaggcgat aacacttaag gccaagggag ttgttcgttg
      781 accaaacctc atgtgattgt ttattcgcga ccgggttgtc atctttgcga tgacgccaaa
      841 ctcgccatcg agaccgctgg ctgcagcgat cgtttcatcc tcgaagaggt caatatcgaa
      901 tctgatgagg agctactcag aaaatatcag tacgacatac ccatcgtgct gatcgacggg
      961 gtcgaggcgt tccggcatcg ggtggataag gatcagttta gaggactagt tcaggtgaag
     1021 ttccacggct agttgattga tcgactcgaa caatcgcgcg cgttcggttt ccgagcgcga
     1081 ctcgcggtaa gccatcacca actcctttaa attggcgaac tccttgtaca agcccgcgtt
     1141 ctcgatcggc ggcgtgaggt aggagatcaa ctctgcgtaa gagcggcgtt tggcgatcga
     1201 cccttcggac gggttgttga cgctgtagac gtagaagttc ggcagttcgt cgatgaggcg
     1261 gtccggccag cactcgcctg agagtccgat ctgtttgccg ggcatgaact cgagcgagcc
     1321 gtgcgtgccg aagtggatca cgccgtcggc gttcaggact tttgacaagt aagtataaaa
     1381 ggccatgaag ccgtgagtcg gcgagccact gcgcgccatc atcatgcgca tcggatcgcc
     1441 ttcaaagccg aacgtcggtt gcacgccgat gaaaacattc ccaagcctga gcccctcgat
     1501 ctttatgtga ctcggcacgg cgccccaatc tttttcaact tccctgacgt acgggcacag
     1561 gcggcgatat tcatcagcgc tcaaacggta agcgacgttt gccgtcgctc cgaacgtttc
     1621 g
//
LOCUS       DASWTX010001392         1588 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_148413, whole genome shotgun sequence.
ACCESSION   DASWTX010001392 DASWTX010000000
VERSION     DASWTX010001392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148413"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(82..>1588)
                     /locus_tag="VGD38_21135"
     CDS             complement(82..>1588)
                     /locus_tag="VGD38_21135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730603.1"
                     /translation="RAGLPGLNFANIDGIKHYHTPLDNVAGVDQDSMQHQGSYALALT
                     RHLGNQDLTQTKERNAVYFDLFGRFLVHYSSAWVIPLTLLVSALFIALLIVGLRKQKL
                     TIRGIAVGFGSLLASILVASLFGWLLWKAVWMLRPTLEAIQSRLLLLGFLALAIATTL
                     VVYGFLRNRVSLPDLATGALLWWFVLMLVTTFTLPGATFIFHWPLLFSLIGLAWILLA
                     PADKTRSLLNLIVLGLCALPAIILMAPVIYQIFVGLTLNWSVVVIALMVLLFGLLLPH
                     LRLIATPFKWFAPGLSAAAAVVLLVAGVLTIATATQKRPNRIYYALNADTGKAVWASD
                     LSQPDERTPQFFTGNEEKGTLADFAYGGQSRQYTLNPAPVAPLPAPELQVLEKKEIDG
                     VQTLRMRVLSPRQAGLLSIYLDSNAQVLSASINNEQLNEELKDRWGVFIEGFPKEGVE
                     LVLQLRTGEPVKLRVVDQSFGLPPVNAASSQQPAVLSPRPDLTFLMKSFTL"
BASE COUNT          389 a          447 c          451 g          301 t
ORIGIN      
        1 gggtaagtca cattgaccac aatttaaaaa gcgaacgggc gccaaatcgg cgcccgtttc
       61 cattgtcgga ttaatgttgc gttagagcgt gaaagacttc atgaggaacg tcaggtcggg
      121 tcttggtgaa agcaccgcgg gttgttggct cgaggctgcg ttgaccggcg gcaatccgaa
      181 cgactgatcg accacgcgca gcttcacagg ctcgccggtt cttaattgca acaccagctc
      241 gacgccctct ttcggaaaac cttcgatgaa cacgccccaa cgatctttta actcttcgtt
      301 caactgctcg ttattgattg acgcactcaa cacctgcgca tttgagtcaa gatagatcga
      361 caacaaccca gcctggcgcg gcgacaagac tcgcatgcgc aacgtttgca cgccgtcgat
      421 ttctttcttc tccagcactt gcagctccgg cgctggcagt ggcgcgaccg gcgcgggatt
      481 gagcgtgtac tggcgcgact gaccaccgta cgcaaaatcc gccagtgttc ccttctcttc
      541 gttgccggta aagaattgcg gagtccgttc gtcgggttgg gacaagtcgc tggcccaaac
      601 cgctttaccc gtatcagcat tcaacgcgta ataaatacgg ttgggccgct tttgcgtggc
      661 agtggcgatc gtcaggacac cggcaacaag caggacaacc gcagccgccg cagataaccc
      721 cggtgcaaac cacttgaacg gcgtcgcgat caagcgcagg tgcggcaaca acagtccaaa
      781 cagcaagacc atcaacgcga tcacgaccac ggaccagttg agcgtaagac ctacgaagat
      841 ctggtaaatg acgggcgcca tcaagatgat cgccggcaac gcgcaaagac cgagaacaat
      901 caagttaagc aggctgcggg tcttgtccgc cggcgcgagt aagatccacg cgagaccgat
      961 caggctgaac agcagcggcc agtggaaaat gaaagtcgcg cccggcagtg tgaaggtggt
     1021 cacgagcatc agcacaaacc accagagcaa ggcgcctgtt gccagatcgg gcaaactgac
     1081 gcggttgcgt agaaagccat acacgacgag cgtcgtcgcg atcgcgagcg ccagaaaacc
     1141 gagcagtagg agccggcttt gaatcgcttc gagtgtcggc cttaacatcc acacggcctt
     1201 ccagagtaac cacccgaaga gtgaagcaac caagatgctg gctaagagcg aaccgaatcc
     1261 gactgcgata ccgcgaatgg tcagcttctg tttgcgcaaa cccacaatca gcagcgcgat
     1321 aaaaagcgct gagacgagga gcgtcaacgg aatcacccac gcactcgagt aatgaacgag
     1381 gaacctgccg aacagatcga agtaaacggc gttgcgttct tttgtctgcg tgagatcctg
     1441 attgccgagg tgacgtgtaa gcgccagtgc atacgagccc tggtgctgca tgctgtcttg
     1501 atcgacgcct gcgacgttgt cgagtggtgt gtggtagtgt ttgatgccgt cgatgttggc
     1561 gaagttcagt cccggcagtc cggcacgt
//
LOCUS       DASWTX010001393         3023 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_213585, whole genome shotgun sequence.
ACCESSION   DASWTX010001393 DASWTX010000000
VERSION     DASWTX010001393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3023
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213585"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..191
                     /locus_tag="VGD38_21140"
     CDS             <1..191
                     /locus_tag="VGD38_21140"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY0730604.1"
                     /translation="LLEYEHDLIKQALKQSNGSVTHAATLLGKSYQGLAYMIETKHQD
                     LMTARTPVRRRPRKRRRK"
     gene            complement(192..716)
                     /locus_tag="VGD38_21145"
     CDS             complement(192..716)
                     /locus_tag="VGD38_21145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730605.1"
                     /translation="MSGAGEDSYKWTYGVRLIARQIDRAKWRNTLTYRFHPRFTAGIE
                     YNPLAGKVSPLANLVVVTETHQRPAVIVGTSSDRIGTPSGQSFYATVSKSLKHWTNLP
                     VSPYVGVAYGTFEDRARVIGGLNIAIGERWSSTILFDGVRVHPIVNYTFGRHQVGAIF
                     ERGRHPGVSYSVSF"
     gene            complement(744..1646)
                     /locus_tag="VGD38_21150"
     CDS             complement(744..1646)
                     /locus_tag="VGD38_21150"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY0730606.1"
                     /translation="MKSFFVVLVLVLTAVTAIAQKSAAKLEGQVVCCEECWAQADRTK
                     VEFGTAEDLLKAKSCVEGGDPTLLAVREGDQFKLYQLALGKYRLPGKNWLDFVGKRIA
                     VEGTIQMKKDVSTIRVDSLQVLAPSLAEREAARSVGQSANLTLNDLSGVEQSLQSLKG
                     RIVVLNFWATYCVPCRKEMPDLAVIQNEFAPLGVQVIGVSTDDLADRSKVLQFVKETK
                     VNFPIWVGGTTEHMVRFGLGAALPGTVIINREGKITKIISGVVDQAGLRKQIEALLAV
                     ASTNKPESSAAAKERKPEVSAVPS"
     gene            1713..2225
                     /locus_tag="VGD38_21155"
     CDS             1713..2225
                     /locus_tag="VGD38_21155"
                     /inference="COORDINATES: protein motif:HMM:NF019301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HEY0730607.1"
                     /translation="MNQRELSKSAVDIDRAWAILFARLVLGLIFFMAGVMKVFQLGPL
                     NHARKYFLPFADTFLPVWSLWATGVVIPFVELIAGAQVIIGLRVREALVALGFVLAIV
                     TFGHLLHQPLYEFHTHVIPRLALLLFILLLPRADDRFSLDYVTARRRAESSPRARERR
                     AADAGPVAGV"
     gene            complement(2528..>3023)
                     /locus_tag="VGD38_21160"
     CDS             complement(2528..>3023)
                     /locus_tag="VGD38_21160"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY0730608.1"
                     /translation="VIMAQNEQDDSIRKHVLYLLRGGGAHQSFDDLAGSFPPDLCNRR
                     IEGLPYTPWQVLEHMRLAQWDILEFSRDPDHVSPEFPKGYWPKPDELGTPALWQQSID
                     KFRSDLQQMEALVEDPATDLYAKIPHGDGQTILREALLIVDHNAYHLGALAVMERIVK
                     TVPE"
BASE COUNT          632 a          946 c          802 g          643 t
ORIGIN      
        1 agctacttga gtacgagcac gacttgatca agcaggcgtt gaagcaatca aacggctccg
       61 taacgcacgc cgcgactttg ttgggcaaga gctatcaggg gttggcctac atgatcgaaa
      121 cgaagcacca ggacttgatg acggcacgaa cgccggtgcg ccgcaggcca cggaaaagac
      181 gaaggaagta gctagaaaga aacgctgtaa ctcacgcccg gatgccgccc gcgttcgaag
      241 atagcgccga cctgatgccg tccaaacgtg taattcacaa tcggatgtac acgcacaccg
      301 tcaaacagaa tcgttgagct ccagcgctcg ccgatcgcga tattcaaacc tccgatcacc
      361 cgcgcacgat cttcaaacgt tccatacgca acacccacgt aaggactgac cggcaggttg
      421 gtccaatgtt tgagactctt gctcaccgtc gcgtagaacg attgtcccga cggcgtgccg
      481 atgcggtcgg agctcgtgcc gactatcact gccggtcgtt gatgtgtctc agtaacgacg
      541 acgaggttcg cgagcggact gaccttgccg gccagcgggt tgtattcaat gccggcggta
      601 aagcgcggat gaaagcggta ggtcagagtg ttgcgccact tcgcgcgatc gatctgcctg
      661 gcgatcagcc gcacgccgta ggtccacttg taactgtcct cccctgcccc gctcacggcg
      721 cggccctcgc cgggtcaaag cggtcaactc ggaaccgccg agacttcagg ctttcgttcc
      781 ttcgccgccg cgctcgattc cggtttgtta gtgcttgcga ccgcgagcag ggcttcgatc
      841 tgttttcgga gcccggcctg atcgaccaca cccgagatga tcttcgtgat ctttccttca
      901 cgattaatga tgaccgtgcc gggcaatgca gcgccgaggc caaaccgcac catgtgctcg
      961 gtagtgccgc caacccagat cgggaaattc accttcgtct cttttacaaa ctggagcact
     1021 ttgctgcgat cggcaaggtc atctgtcgag acgccgatca cctgcacccc caacggcgcg
     1081 aattcattct ggattactgc gaggtccggc atctctttcc ggcacggaac acagtacgtg
     1141 gcccagaagt tcagcacgac gatgcggccc ttcagacttt gcagcgactg ctcaactccc
     1201 gagaggtcgt tgagcgtcag gttcgccgac tgccccaccg atctcgcggc ctcacgttcg
     1261 gcaagactcg gcgcgagcac ttgcaaacta tcgacccgaa tcgtgctcac atctttcttc
     1321 atctgaatcg tgccttcaac ggcgatgcgc ttgccgacga agtcgagcca gttcttcccg
     1381 ggcaaacgat acttacccaa agctagctga tacagcttga attggtcgcc ctcccgaacg
     1441 gccagcaacg tcggatcgcc gccctcgacg cacgactttg ccttcaacag atcctccgcg
     1501 gtaccgaact caaccttcgt acgatccgcc tgggcccaac actcctcaca acacacaacc
     1561 tgcccctcga gcttcgccgc agacttctgc gcgatcgccg tgacggcagt caggaccaat
     1621 actaaaacga caaaaaatga cttcatcaaa aatctcctga gactacactc cgtcgacgcg
     1681 ttatattcaa ccgcgtcaaa ggagaatctg ctatgaatca gcgtgagttg tcaaagtcgg
     1741 cggtagacat cgatcgggcc tgggcgattc tgttcgcgcg tctggttctt ggtttaattt
     1801 tctttatggc cggagtgatg aaggttttcc aactgggccc gctcaatcac gctcgcaaat
     1861 acttcctgcc gtttgccgac acgtttctgc ctgtctggtc gctttgggca acaggagtcg
     1921 tcatcccgtt tgtcgaactg attgccggcg cgcaggtaat tatcgggctg cgcgttcgtg
     1981 aggccctggt tgcgctgggc ttcgtgctcg cgatcgtcac gttcggtcac ttacttcacc
     2041 aaccactcta cgagttccac actcacgtca tcccgcgcct cgcactactc ctcttcattc
     2101 tgctgctgcc gcgcgcagac gatcgctttt cattagacta cgtcaccgcc cgacgccgcg
     2161 ctgaatcttc accacgcgct cgcgaacgac gggcggcgga tgccggccca gttgctggcg
     2221 tctgatgacg atggcgcgaa cgatggcttc accttcaaca aatcctttta ttatgtcctc
     2281 ggtgagaaag acagtttggg atgactcaag agggcgtgga tcgagcagtg accattcgtt
     2341 cttaggaaca cggtgaacgc caactatctc ggagcgcccg ccctggacca gcgcgcgata
     2401 cgccgcaatc atcccgatga cgatagacac tcacaacgat cacgcacgcg cgcttcacgc
     2461 acgcaatcca acgcgtgtca cggaccgctg aactctcgaa catcgcgtcc ttagtttgca
     2521 tagcgaatca ctcaggcacg gtcttcacga tacgctccat caccgccaac gcgccgagat
     2581 gataggcgtt gtggtcgacg attaaaagtg cttcgcgcag gattgtctgg ccgtcgccgt
     2641 gcgggatctt cgcgtacaga tccgtggccg gatcctcgac gagcgcttcc atctgttgca
     2701 ggtcgctgcg gaacttatcg atcgactgtt gccacaaagc cggcgtgccc agttcgtccg
     2761 gcttgggcca gtaacctttc ggaaactccg gcgagacgtg atcgggatcg cggctgaact
     2821 cgagtatgtc ccactgcgcc agacgcatgt gttccagcac ctgccacggc gtgtaaggca
     2881 aaccctcgat ccggcggttg cacaaatcgg gcggaaagct ccccgccaga tcgtcgaatg
     2941 attgatgagc accgccgcct cggagcaggt agagcacgtg ctttctaatt gaatcgtcct
     3001 gttcgttctg cgccatgatg act
//
LOCUS       DASWTX010001394         4500 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_192044, whole genome shotgun sequence.
ACCESSION   DASWTX010001394 DASWTX010000000
VERSION     DASWTX010001394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4500
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192044"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3355)
                     /locus_tag="VGD38_21165"
     CDS             complement(<1..3355)
                     /locus_tag="VGD38_21165"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEY0730609.1"
                     /translation="MKHEAVSGIAKNLSDLSASERAALVMRLKKKPAEQTPEQTIERR
                     KDSGPMPLSFAQQRLWFLEQMGYSNYYVSGASRLTGVLDAKALEQSLNAIVQRHEVLR
                     TTFTTIDGEPMQIIAPRLSVTLPVLDLRQLPADERAAEAARLRLEATRPFNLESGPLL
                     RTSLLRIAEDEHWLLLTTHHIVSDGWSLGVLFRELAAFYEGFVEGKTPSLPELPIQYA
                     DFAVWQRRWLGGEILERQMAYWKEQLRDTPPLLDLPTDLPRPAVPTIEGSFYLCGISK
                     ELTDALKNLSRREGVSLYMTLLAAFKILLARYAGQDDVVVGTPIANRNRIETENLIGF
                     FVNTLVLRTDLSGNPSFKDFLRQIREVTLGAFAHQDMPFEKLVEELQPERDLTRTPFF
                     QVMFSLQNVAVPAIKMSQVTMALLDDEVITTSQFDLTFDSTELSDGSMECLLEYNTNI
                     FERATVQRMLTHYINLLESIVANPQQRIRELPMLTGDERRQIVVEWNATAREYPHDRC
                     IHQLFEAQAERTPDAIAVVFGEERVTYAELNRRANQLGRYLKQLGVGTETRVGILLER
                     SIEMPVALLAVLKAGGAYVAFDPSYPPDRLLYMFEDSDVSVLLTQENVVAGQPAHRAR
                     VVCLEAERGSIAEQDARNLQSDVDPSNLAYLVYTSGSTGRPKGILVAHRSVVNASYGF
                     INNHRLTERDQLLQFASLSFDVSAEEFFATWFSGGCVVMRSDQTLSSFAEFTAVLQRE
                     NISIANLPASFWLEWLSVLADRGGEIPKSVRRVIVGNEKSLEETLAKWQRVIGPTVEW
                     RNAYGPSETTITCSNYEPTSARAAREEKSAIPIGRPVNNVQMYVLDSALQIVPTGVAG
                     ELYIGGDGVARGYNKQPAQTAERFLPNPYAKRSGERFYQTGDAVRFRADGNIEFLGRV
                     DEQIKIRGFRIEPGEIEAVLAQHADVRESVVVAGDDGRGGQRLIAYVVSNNGDLRTDE
                     LRGFLQERLTEYMVPSSFVMLETLPRTPNGKVDRRALPNVDTTNTDASEAYIAPRSAT
                     ERTIANIWQEVLKVEKVGINDNFFGLGGHSLLLVHAQSKVSEALRVNVSMIEMFKYPT
                     ISALAEHLSEQRSSLPASTPVQNPAGTRAE"
     gene            complement(3590..4309)
                     /locus_tag="VGD38_21170"
     CDS             complement(3590..4309)
                     /locus_tag="VGD38_21170"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEY0730610.1"
                     /translation="MTIPAVSKQLARRNRILAALPDVEFARLLPHLESVHLEKGEIVY
                     LTGDEIQYVYFLESGLLSFLSTTETGSTIEVAMVGNEGIAGLPVILRNRITPYEVVVQ
                     FASEAFKLRAELLQEEFSRGETLQEWVLRYINVLMVQVAQSSICNRFHSFEQTLSRWL
                     LTVQDRVNSDSLNLTHETIAHALGVPRTAVTMAAGTLQRAGIIRYSRGKISILDHSKL
                     EANSCECYRIISNELRQFNSV"
BASE COUNT          973 a         1321 c         1188 g         1018 t
ORIGIN      
        1 attctgcgcg ggtgccggcc gggttttgca cgggtgtgga cgccggcagc gagctgcgct
       61 gttcactcaa atgctcagcc aacgcgctaa tcgtcgggta cttgaacatc tcaatcatcg
      121 aaacgttcac tctcaacgct tcgctcactt tgctttgcgc atggaccaac aacagcgaat
      181 gtccgcccag accgaagaag ttgtcgttga taccaacctt ctccaccttg agaacttcct
      241 gccagatgtt tgcgatcgtg cgctcggtcg cggagcgtgg tgcaatgtag gcctcgcttg
      301 cgtcagtgtt cgtcgtgtcg acattcggaa gcgcgcgccg atcaactttc ccgttgggag
      361 tacgcggcaa cgtttccagc atcacaaagc tggacggaac catgtactcc gtcagcctct
      421 cctgtaagaa cccgcgcagc tcgtctgtcc gaaggtcgcc attattacta accacgtaag
      481 caatcaagcg ctgaccgccg cgtccgtcgt cacccgccac gacaacactt tcgcgaacgt
      541 ccgcatgttg ggccagcacc gcttcaatct ctcccggttc gatcctgaat cccctgatct
      601 tgatctgctc gtcgacgcgc ccaaggaact cgatgtttcc atccgcccga aaccgcacag
      661 catcgccggt ttggtaaaaa cgctcgccgc tccttttggc gtaaggattc ggtagaaacc
      721 tctccgctgt ttgcgccggt tgtttgttat acccgcgtgc aacgccgtcg ccgccgatgt
      781 acaactcacc agcgacaccc gtgggcacga tctgtagcgc gctatcaagc acgtacatct
      841 gcacgttgtt tacaggccgc ccgatcggta ttgcgctctt ttcttcacgc gccgcgcgtg
      901 cgcttgtagg ttcatagttg ctgcacgtta tcgtcgtctc actcggccca taagcgttgc
      961 gccattcaac cgttggtcca atcacgcgct gccattttgc aagtgtttcc tccaggctct
     1021 tttcattgcc gacgatcacg cgccgcaccg acttcggtat ttcgccaccg cgatccgcca
     1081 gcacactcaa ccattccaac cagaacgacg ccggcagatt cgcgatactt atattttcac
     1141 gctgcaacac cgcggtgaac tcagcgaacg agctcagcgt ctgatcggac ctcataacga
     1201 cgcacccgcc gctgaaccac gttgcaaaga actcttccgc cgacacgtca aagctcaacg
     1261 aagcgaactg caacagctgg tcgcgctcag tcagccgatg attgttgata aaaccgtagc
     1321 tggcgttgac cactgagcgg tgtgcaacga ggatgccttt cggccgtccg gtcgaaccgg
     1381 atgtgtagac cagatacgcg aggttcgagg gatcgacatc actctgcaaa ttccgcgcat
     1441 cctgttcggc aatcgaacct cgctcagctt caagacaaac gacacgtgcg cgatgcgcag
     1501 gctggcccgc cactacgttc tcctgtgtca gcaaaaccga cacgtctgaa tcctcaaaca
     1561 tgtagagcaa acggtccggc gggtaagacg ggtcgaacgc aacgtacgcc ccaccggctt
     1621 tgagcacagc cagcaacgca acgggcatct cgatcgagcg ctccagcaga ataccgacac
     1681 gggtttcagt ccccacacca agctgcttta gataacgccc aagctgattg gcgcgtcgat
     1741 tcaactcagc gtacgtgaca cgctcctcgc cgaaaactac cgcgatcgcg tccggcgtgc
     1801 gctcggcctg cgcttcaaaa agttgatgaa tacaacgatc gtgcgggtac tcgcgcgctg
     1861 tagcgttcca ctcgacgaca atctgccggc gctcgtcacc ggtcagcatc ggcagttccc
     1921 ggatacgctg ttgcgggttc gcaacaatac tctcgagaag atttatgtag tgcgtcagca
     1981 tgcgctgcac tgtcgcgcgt tcgaagatgt tcgtgttgta ttccagcaaa cactccatgc
     2041 tgccatcgct gagttcggtg ctgtcgaaag tgagatcgaa ctgcgaggtt gtaatgacct
     2101 cgtcgtcaag cagcgccatc gttacttgcg acattttgat tgccggcacc gcaacgttct
     2161 gaagtgaaaa catcacctga aagaaaggtg tgcgggttag gtcgcgttcg ggctgcaact
     2221 cctcgacgag cttctcaaac ggcatgtcct gatgcgcgaa agcgcccagc gtaacttctc
     2281 tgatctgtct caaaaaatct ttaaatgatg gattgcccga caggtctgtt ctcaacacca
     2341 acgtattaac gaagaagccg atcaggttct cggtctcgat gcgattccga ttcgcgatcg
     2401 gagtgccgac tacaacatcg tcctgccccg cataccgcgc caacagaatc ttgaaagccg
     2461 caagcagcgt catgtacaaa gacactcctt cacggcggct cagatttttc agcgcgtccg
     2521 ttaactcttt gctgattcca cagagataga aagaaccttc gatcgtggga actgccgggc
     2581 gcggcaaatc ggttgggaga tcgagcaacg gtggcgtgtc gcgtaactgc tccttccaat
     2641 atgccatttg ccgctcgagg atctcgccgc ccaaccaacg gcgttgccag actgcgaaat
     2701 cagcgtattg aatcggaagc tccggcaggc ttggtgtctt gccttcaaca aagccttcgt
     2761 agaatgcagc gagttcacgg aacaaaaccc cgagtgacca gccatcagag acgatgtgat
     2821 gcgtcgtcag caacaaccaa tgctcgtctt cggcgattcg cagcaggctc gtgcgcagca
     2881 gtggcccact ctccaggttg aaaggacgcg ttgcttcgag tctcagccgt gctgcctctg
     2941 ccgcgcgttc gtccgcgggg agttggcgca gatcgagcac cggtaatgtc acggataatc
     3001 gcggcgcgat gatctgcatt ggctcgccgt cgatcgtcgt gaaggtcgtg cgcaacacct
     3061 catggcgttg cacgatcgcg ttcaggctct gttcgagggc cttcgcatcg agcacgccgg
     3121 ttaagcggga agcacccgag acgtagtagt tgctatagcc catctgctcg agaaaccaga
     3181 gtcgctgctg cgcgaacgaa agcggcatgg gacccgaatc tttacgacgc tcgattgttt
     3241 gctcgggtgt ttgctccgcc ggttttttct tgaggcgcat cacgagcgca gcgcgctcac
     3301 tcgccgaaag gtcactcagg tttttggcaa ttccacttac cgcttcatgc ttcatacgag
     3361 atcgctccgc cgtgaatcgc cgccaacgcc attcaacggg atcttatgcc cgcgtttctt
     3421 cgacaattgt tgttgaatca cggcctacca ggtcgggatg aggatggaag aaagcgagct
     3481 accgcccctt gagtcaggaa ctcaaaatcg aaggtgatcg gaggacggga gggatccttc
     3541 tacctgaata tggacgggct gtctgtcgag aagccgactg agtctggaat cagacggagt
     3601 taaattgccg cagctcgttg ctgattatcc gatagcactc gcaggagtta gcttcgagtt
     3661 tgctgtggtc gagaatagaa atcttgccgc ggctgtagcg gataattccg gctctctgca
     3721 atgtgcctgc ggccatcgtg acagccgttc tgggaacgcc caaggcgtgg gcaatagtct
     3781 cgtgggtgag attcagactg tctgagttca ctcgatcctg aacggtcagt aaccaccggc
     3841 tgagcgtttg ctcgaaactg tgaaaacgat tgcagataga tgattgtgcg acttggacca
     3901 tcaacacgtt gatataacga agcacccatt cctgcagtgt ttcccctcgg ctgaattctt
     3961 cctgtagaag ttcagcacgg agtttgaatg cttcggaagc gaactgcacc acgacctcgt
     4021 agggcgtgat ccggtttctc aagatcaccg gaaggcccgc tatgccttcg ttaccgacca
     4081 ttgcgacttc gattgtcgaa ccggtttcgg ttgtggaaag aaaagacagc aggccgctct
     4141 ccagaaaata gacgtactga atctcgtctc ccgtcaggta gacgatctcc cctttctcaa
     4201 gatggacact ttccaggtgc ggcagcagac gtgcgaactc tacgtccgga agggcagcca
     4261 ggatcctatt ccgcctggca agttgcttcg atactgcagg tatagtcaat tgctcgctgc
     4321 gcttacggga gaatgttttt tatcctgggc caatcattga aatggttgag gcaatagcga
     4381 cggtgaggtg aggttatctt acccttttgc agtgccctgt caacattcgc cggccaggcc
     4441 ggattctaat ttacactcct atagcaatct gctacgctgt gcgcctctcg gttccaggca
//
LOCUS       DASWTX010001395         1566 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_192047, whole genome shotgun sequence.
ACCESSION   DASWTX010001395 DASWTX010000000
VERSION     DASWTX010001395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1566
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192047"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..180)
                     /locus_tag="VGD38_21175"
     CDS             complement(<1..180)
                     /locus_tag="VGD38_21175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730611.1"
                     /translation="MLKRILFFAYGTFCYLIFLGTFLYAIGFIGNFGVPSTLDGAATG
                     PFWISFLIDAGLLTLF"
     gene            317..1411
                     /locus_tag="VGD38_21180"
     CDS             317..1411
                     /locus_tag="VGD38_21180"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY0730612.1"
                     /translation="MSKRATQRIRYLRTRDGVQLAWAEAGAGPTLIKAANWLTHLEYE
                     WESPVWRHWIRFFCDHFRFIRHDERGCGMTDWNVGDLSFERWVEDLESLVDVVDPQEP
                     FGLLGISQGAATCIAYAVKHPERVSQLVLYGAYARGTYQRKDPEKERFYRALIEMTRT
                     GWGKDNPAFRQVFTSRFVPGASEEQIGWFNELCRKTTSPEIAARLLETRAEINVVELL
                     GQVQAPTLVLHSRDDDVIPIAEGHILAEGIPNAQFVELDSRNHILLETEPAWERFCAE
                     VLDFMHVKGASRGEDPAFASLSPREREVLALITEGLGNAEIAARLSISEKTVRNHVSN
                     LFDKLGVWTRAQAMVFANDHGFSAATPGKH"
BASE COUNT          324 a          457 c          449 g          336 t
ORIGIN      
        1 gaacagcgtc agcagtcccg cgtcgatcag aaaactgatc cagaacggtc cggtcgcggc
       61 gccgtcgagc gtgctcggaa cgccgaagtt gccgatgaat ccgatcgcgt acagaaacgt
      121 cccgagaaag atcaggtaac aaaaagttcc gtaagcaaag aacaggattc gcttgagcat
      181 tgtctttgtc tccacttcta ttaattcgcg gcgcatcatc gcgcgttgcg cggagttagg
      241 ctatgggagt ttagtcccgg tttggatata ctccggtgcc ttcgcatggg acttttgtct
      301 cgggtcgtga tcttccatga gcaagcgggc aacacagcga attcgctatc tccgcacgcg
      361 cgacggcgtg cagctcgcct gggctgaagc gggtgcgggc ccgacgctga tcaaagccgc
      421 taactggctc acccatctcg aatatgagtg ggaaagcccg gtctggcggc actggattcg
      481 tttcttctgc gaccacttcc gtttcattcg tcacgacgaa cgcggctgcg gcatgaccga
      541 ctggaacgtc ggcgaccttt ctttcgagcg ttgggtcgag gatttggaat cgcttgtcga
      601 cgtcgtggat ccgcaagagc cgtttggctt acttggcatt tctcaaggcg ccgcaacgtg
      661 catcgcctat gcggtaaagc atccggagcg tgtgtctcaa ctggtgctct acggcgccta
      721 cgcgcgcggg acgtatcaac gtaaagaccc cgagaaagaa cggttttatc gcgcgctgat
      781 cgaaatgact cgcaccggct ggggcaaaga caatcccgcg ttccggcagg tgttcacgtc
      841 acgatttgtt cccggcgcga gcgaagaaca gatcggctgg ttcaacgaac tctgtcgcaa
      901 aacaacgtcg cccgagatcg ccgcgcgact gctcgaaacg cgcgccgaga tcaacgtagt
      961 cgaactgctc ggccaggtgc aggcgccgac gttagtgctg cactcacgcg acgacgatgt
     1021 gatcccgatc gccgaaggac acatcctcgc ggagggaatc cccaacgctc aattcgtcga
     1081 gctcgattcg agaaaccaca tcctgctcga aaccgaaccc gcgtgggaac gtttctgcgc
     1141 tgaagtcctg gacttcatgc acgtgaaagg cgcgagtcgc ggtgaagatc cggcctttgc
     1201 atccttgtcg ccgcgcgagc gcgaggtgct ggcgctgatc accgaaggcc tgggcaatgc
     1261 ggagatcgcc gcgcgtcttt cgatcagcga gaagaccgtc cgcaatcacg tctcgaatct
     1321 gttcgacaaa ctcggcgtct ggacccgcgc gcaagccatg gtcttcgcca acgatcacgg
     1381 gttttcggct gcgacgccag gtaaacattg acactgatca aggcgcggta atagactgcc
     1441 gctcgctttc aactaagcct cgttcttact tagctcgttc tcggtcttgc taactagcat
     1501 tcgctagctc tcttctcatc ctcttaggag aagttcgcat gcctcaatgg agtctttcgt
     1561 tctggg
//
LOCUS       DASWTX010001396         2833 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_18646, whole genome shotgun sequence.
ACCESSION   DASWTX010001396 DASWTX010000000
VERSION     DASWTX010001396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2833)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2833
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18646"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..500)
                     /locus_tag="VGD38_21185"
     CDS             complement(<1..500)
                     /locus_tag="VGD38_21185"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY0730613.1"
                     /translation="MQKRKLGNLEVSALGLGCMGMSHGYGPAKDKAEMISVIRAAVDK
                     GITFFDTAEVYGPFTNEELVGEALAPVRDHVVIATKFGFKPDPDDPSKWNGLDSRPEH
                     IRDVVEASLKRLNIESLDLLYQHRVDPNVPIEDVAGTVKDLISEGKVRHFGLSEAGVQ
                     TIRRAHA"
     gene            689..1738
                     /locus_tag="VGD38_21190"
     CDS             689..1738
                     /locus_tag="VGD38_21190"
                     /EC_number="3.4.21.105"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEY0730614.1"
                     /translation="MDYGFVVKGQTIGCTRDELVESLLKRGSEIDFVWTPNTPQPVRP
                     EQVPFLIRALRESETISARNWMLLGGAVVAFCVIQAFASQGLGQLSRSVVFTVGAILL
                     AMGNTKYWRSLRYSQEDAVSDASTARFEKWIYKKSVSTYTITVLASIVLASVFASLAE
                     DSTALAGLVKPAVWRGELWRLFTAPLMHTDFSQFLINAFGLIYLSKLTEQTLHRALLP
                     LLFLVCAVVSSVSSLIFDPLTSLVGGASGGLLGLVGFITTASFFDRTNYPPGYFKRMI
                     VIMAAFFAVNLFGFEFFDPAAGVGGIVAGGILGWLCAKLKRPRVSEKLLKVAGVGGML
                     GLASAAVLAVSRLIS"
     gene            complement(1731..2702)
                     /locus_tag="VGD38_21195"
     CDS             complement(1731..2702)
                     /locus_tag="VGD38_21195"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEY0730615.1"
                     /translation="MVPVSILDLVPVVLGETPREALGKSLDLAQQAERLGYTRYWVAE
                     HHNMTGIASAATSVVIGYLAGGTSRIRVGSGGIMLPNHSPLVIAEQFGTLESLYPGRI
                     DLGVGRAPGTDHRASRALRREPGRADTFPEDVLELQALLAPAKSGQAVRAVPGAGTEV
                     PIWILGSSTYGAELAATLGLPYAFASHFAPDALLSALDIYRRKFKPSKQLDQPYAMVG
                     VNVVAADTDEEAGRLFTTIQQSFTNLVRGAPGKLQAPIDNIDDYWTPMEQHQAAHMLK
                     YSIVGSGETVRKGLEDFVALTKADELMIVTSLYDHGARVRSFEKIIN"
BASE COUNT          557 a          818 c          790 g          668 t
ORIGIN      
        1 gcgtgtgcgc ggcggatcgt ttgcacaccc gcttcggaaa gtccgaagtg cctgacctta
       61 ccttcgctga tcaggtcttt cactgttccc gccacgtctt caatcggaac gttcggatcg
      121 acacggtgct ggtaaagcag atcgagcgat tcaatgttga gccgtttgag agatgcttcg
      181 acgacgtctc tgatgtgttc cggacggctg tccaggccgt tccattttga cggatcgtca
      241 ggatcgggct tgaagccgaa cttggtggcg atcacgacgt ggtcgcggac cggcgccagg
      301 gcctcgccga cgagctcttc gttcgtgaat ggaccataga cttcggcggt atcaaagaaa
      361 gtgatgccct tgtcgaccgc cgcgcggatg accgagatca tctccgcttt atctttcgcc
      421 ggcccataac cgtggctcat gcccatgcat ccgagcccga gtgccgacac ttcgaggttt
      481 cccagcttgc gcttctgcat ctatttttgc tcccgtggtt gacagtctaa cacttctcgc
      541 cgacacggac attcgggtag aataagcgcc aactcatatg tcctcgtccg aatcctccat
      601 cttcgtcggc ggctacgatg cgcccggcgc acccttgctg cagcgcgagt gggatctgac
      661 tggtccaata ccggccagga cttcaataat ggactacggc ttcgtcgtta aaggacaaac
      721 cattggctgc actcgcgacg aactggtgga atcgctctta aaacgaggat cggagatcga
      781 ctttgtgtgg acgcccaaca ctcctcagcc agtacgtccc gagcaagtgc cgtttctcat
      841 cagagcattg cgcgaaagtg aaacgatctc cgcgcgcaac tggatgttgc tgggcggggc
      901 ggtagtagct ttctgtgtaa tccaggcgtt tgcttctcag ggccttgggc agctcagtcg
      961 cagtgttgtt ttcactgttg gcgctatctt actggcaatg ggaaacacga agtattggcg
     1021 ttcacttagg tactcgcagg aagatgcggt aagtgacgcg agcacagctc gttttgaaaa
     1081 gtggatttac aagaagagcg tcagtactta caccataacc gtccttgcgt ccattgtcct
     1141 cgcaagtgta tttgcgagct tggccgaaga ttctactgct ctcgccgggc tggtgaaacc
     1201 ggccgtttgg cgcggggaac tatggcggtt attcactgcg ccgctgatgc acacagactt
     1261 cagccagttc cttattaacg cttttggttt gatctacctc tccaaattaa cggaacaaac
     1321 cctccatcgc gctctcctgc cgctgttgtt tttggtttgc gctgttgtga gcagcgtgtc
     1381 cagtctgatc ttcgatccgc tgacgagttt ggtcggagga gcttcaggtg gactcctggg
     1441 attggtgggc ttcatcacga cggcctcttt tttcgaccgg acaaattacc cgccgggtta
     1501 tttcaagcga atgatcgtga tcatggcggc tttcttcgcc gtgaacctgt tcggcttcga
     1561 gttcttcgac cccgccgcgg gcgttggagg catagtggct ggcgggatcc tgggatggtt
     1621 gtgcgctaaa ctgaagcggc cgcgagtctc agaaaagcta ttgaaagttg caggcgttgg
     1681 gggaatgtta ggactggcgt ctgctgccgt cctcgcagta tcccggctca ttagttaatt
     1741 attttctcga acgaacgcac tcgcgcgccg tggtcgtaga gactcgtcac gatcatcagc
     1801 tcatccgctt tcgtcaacgc gacgaagtct tccaaacctt tccgcaccgt ttcacccgaa
     1861 ccaacgattg aatacttcaa catgtgcgcg gcctgatgtt gttccatcgg cgtccagtag
     1921 tcgtcgatgt tgtcgatcgg cgcctgcaac ttgccgggag cgccgcgcac gagattcgta
     1981 aacgactgct gtatcgtcgt aaacaatcga cctgcttctt cgtccgtgtc ggcggccacg
     2041 acgttgacgc cgaccatcgc atacggctgg tccaactgtt tcgacggctt gaattttctg
     2101 cggtagatat cgagcgcgct caacaacgcg tcgggcgcga agtgagaggc gaaggcgtaa
     2161 ggcagtccga gcgtcgcggc gagttcggcg ccgtacgtac tcgacccgag gatccagatc
     2221 ggaacttcag tgccggcgcc cggaaccgcg cgcaccgctt gtcccgattt cgcaggcgcg
     2281 agaagcgcct gcagctccag cacgtcttcc ggaaacgtgt ccgctcgtcc cggctcgcga
     2341 cgcagcgcac gcgacgcgcg atgatccgtt cccggcgcgc ggcccacgcc cagatcgata
     2401 cgccccggat acagcgactc gagtgtgccg aactgttcgg caatcacgag gggcgaatga
     2461 ttcggcagca tgatgccgcc cgagccgacg cgaatcctcg acgtaccgcc cgcgagatac
     2521 ccaatcacga ccgaagttgc cgcactggca atcccggtca tattgtgatg ttcggcaacc
     2581 cagtagcgcg tataccccaa ccgctccgcc tgttgcgcca gatcgagact cttccccaac
     2641 gcctcccgcg gcgtctcccc gagcacgacc ggcaccagat ctagtatcga aacaggaacc
     2701 atgcttgttc tttctgtaat gcagtttgat ttagcttaag ctgaaagtga gcaaagagaa
     2761 acctcgcgtt gaggcttttg cctatgttgc gagaaactgc cctttttgct ttatttaagc
     2821 tgaatgtgaa aaa
//
LOCUS       DASWTX010001397         1777 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_85803, whole genome shotgun sequence.
ACCESSION   DASWTX010001397 DASWTX010000000
VERSION     DASWTX010001397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1777
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85803"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..949
                     /locus_tag="VGD38_21200"
     CDS             <1..949
                     /locus_tag="VGD38_21200"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEY0730616.1"
                     /translation="SAMSGVTDALIASFRGVSTKGVEASARSLEEHFARHVQVGQNLS
                     QVRFARLQSLIEISRSGIVELLTRAASNGKVDLRLHDAVASHGERLAANLLALVLEEH
                     GMPAHYVDARSCVITNNEHGNAAPLLAELQQKTRAELLPLLDQKRIPVLGGFIGSTTD
                     GVTTTLGRGSSDYSATLIGAAVHAREIEIWTDVDGIQTADPRLVQATRTVPHVSYTEA
                     AELAKLGARVMHPKMIEPVIAQRIPIRILNSHAPQQPGTLISAEAHPNGTVKAIAHKI
                     AGESAIVGCVGHGLDFKFRVELAEVGSVVRRLHAAIFET"
     gene            complement(946..1674)
                     /locus_tag="VGD38_21205"
     CDS             complement(946..1674)
                     /locus_tag="VGD38_21205"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEY0730617.1"
                     /translation="MKVKNFKILLVFCLALLLAPEIAAQTKKTKYTCPMHPEIVSSKR
                     GTCPKCKMRLVPQTKAKEEPSPTPTPEPNSESTKESSAFSSSKIPDTPVLDQYGKSLS
                     FYSDLIKGKTVAINFVFTTCTAICPSLAATFRRVQQEAATRGIEVELISISVDPTTDT
                     PERLHDFASKFKAGPGWTFVTGDKGRIDLVLQGLGAAVSNKNDHTPMILIGNDSSDYW
                     TRAYGLTSPTKIVDLLAQAAKKTN"
BASE COUNT          366 a          463 c          529 g          419 t
ORIGIN      
        1 gtcggcgatg agtggcgtaa cggacgccct tattgcgagt tttcgtggcg tttcgaccaa
       61 aggcgtcgaa gcttcggcgc gatcgcttga agaacatttc gcgcggcacg tgcaagtcgg
      121 acaaaatttg tcacaggtgc gttttgcccg gttgcaaagt ttgatcgaga tcagccgtag
      181 tggaattgtt gaattgctta cacgcgcagc gagtaacggc aaagtcgatc tgcgcttgca
      241 cgacgctgtt gcttcgcatg gtgagcgtct tgccgcaaac ctgttggcgc tggtgttgga
      301 agaacatgga atgccggccc attacgttga tgctcgcagt tgtgtgatta ctaacaacga
      361 acacggaaac gcagcgccgc tgttggcgga gttgcagcag aagacgcgcg cggagttgtt
      421 gccgctgttg gaccagaaac gcattccggt gttgggtgga tttatcggtt cgacgactga
      481 cggcgtaacc acaacactcg gacgcggcag ttcagattac tcagcaacgc tgatcggcgc
      541 cgcggttcac gcacgcgaga tcgagatctg gaccgacgtc gatggaattc agactgccga
      601 tccgcgtctc gtgcaagcga ctcgcactgt cccgcacgtt tcctacacgg aagccgcgga
      661 actcgcaaag ctcggcgcgc gagtgatgca cccgaagatg atcgaacccg tgatcgcgca
      721 acgtatcccg atccgcatct tgaattcaca cgcgccgcaa caacccggca cgctgatctc
      781 agcggaggcg cacccgaacg gcacggtaaa agcgattgct cacaagattg cgggcgagag
      841 tgcgattgtg ggttgtgtcg gacacggatt ggatttcaag ttccgtgtcg aacttgctga
      901 agtgggatca gtggtgcggc gtctgcacgc cgcgatcttc gaaacttaat tggttttctt
      961 cgcggcctgg gcgagaaggt caacgatctt cgttggcgaa gtcagaccgt aggcgcgcgt
     1021 ccaataatca ctcgagtcgt taccgatcag aatcatcggc gtgtgatcgt ttttgtttga
     1081 aacggccgcg ccgagtccct gcaacaccag atcgatccgt cctttgtcgc cggtcacaaa
     1141 cgtccagccc ggaccggctt tgaacttact tgcgaagtcg tgcaagcgct cgggcgtgtc
     1201 ggtagtcgga tcgacactga tcgagatcag ttcaacctcg ataccgcgcg tggcggcttc
     1261 ctgttgcacg cggcgaaacg tcgcagccag cgacggacag atcgcggtgc aggtagtgaa
     1321 gacgaagttg atcgcgactg tcttgccttt aattaagtct gaataaaaac tgagcgattt
     1381 gccgtattgg tcgagcaccg gcgtgtcggg aatcttcgac gaagaaaagg ccgacgattc
     1441 tttagttgat tcagagttcg gttccggtgt cggtgtgggc gaaggctctt cctttgcctt
     1501 ggtctgcggc actaaccgca tcttgcactt cgggcacgtt ccgcgcttcg aggaaacgat
     1561 ctcgggatgc atcgggcacg tgtatttagt tttcttcgtc tgcgcggcga tttccggcgc
     1621 gagcagcagt gcgagacaga atacgagaag tattttgaag ttttttactt tcatgatgcc
     1681 tttattcctg tggggctttg tcgtccagaa cgctttggac gacctcgatt atggcgtcgc
     1741 ttttcgcgag tccaaacgct ttcttccata gaccggt
//
LOCUS       DASWTX010001398         1860 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_431194, whole genome shotgun sequence.
ACCESSION   DASWTX010001398 DASWTX010000000
VERSION     DASWTX010001398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1860
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_431194"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..539)
                     /locus_tag="VGD38_21210"
     CDS             complement(<1..539)
                     /locus_tag="VGD38_21210"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEY0730618.1"
                     /translation="MNVPLLDLQAQYASLRDEMRPAIERVLESQRFVLGDEVRRLESS
                     VAEYCQANYAVGCASGSDALLLALMALDVKAGDEVVTTPFSFFATGSCIARLGARPVF
                     VDIDRSTYNLDVSQVADALTSRTRAIIPVHIYGQCAEMDPLLALGERLGIPIVEDAAQ
                     AIGATDRGRRAGSMGAVGC"
     gene            complement(608..>1860)
                     /locus_tag="VGD38_21215"
     CDS             complement(608..>1860)
                     /locus_tag="VGD38_21215"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045226 - extracellular polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="polysaccharide biosynthesis tyrosine autokinase"
                     /protein_id="HEY0730619.1"
                     /translation="LNDEVHKAANDAVLGLQKNYEAALAHENSVRDRYNEQRGTTNQQ
                     TRDQIEMTEFSQRLETNKQYLNTLLQKQRELQIAQGDRGNEVSIENYSRVPRSPVGPP
                     RVRNVMIAFVLSLVAGIGLAFLLDFLDDTVKSLDDVDRYVHLPALALIPSGGHAGARL
                     NLKSLPQGHKPGPGESTALAMLDDVRSPIAEAYRHLRTSLLLSSAGQPPKTILVTSSQ
                     PSEGKTTTAINTAFMLAQTGAEVLIIDCDLRRPRLHAQFEVPNSKGLTTWLSGEKDLD
                     NLLQKCPKTPNLKILTSGPVPPNPAELIGSEEMRRLLSHLSERFAHIIIDSPPAISFT
                     DASILSTMVDGVMLVVHGGRSSRAVVRRAKQQLLDVGAHIFGVVLNNVKAEASDYYYS
                     GYYSSNYYSTETDGGRDASASETA"
BASE COUNT          386 a          558 c          548 g          368 t
ORIGIN      
        1 aaacacccaa ccgcgcccat cgagcccgcg cggcgtccac gatcggtcgc gccaatcgcc
       61 tgcgccgcgt cttcgacgat gggaataccg agacgttcgc ccaacgccag caacggatcc
      121 atttccgcgc actgcccgta aatgtgaacg ggaatgatag cgcgcgtgcg tgaagtgagc
      181 gcgtcagcca cttgcgagac gtcgagattg taagtggacc tgtcgatgtc gacgaaaacc
      241 ggccgcgcgc cgagccgcgc aatgcagctt cccgtcgcaa agaaactgaa cggcgtcgtg
      301 acgacttcat cgcccgcctt gacgtccagc gccatcaacg ccagcaacaa cgcgtcggaa
      361 ccagaagcac aaccgaccgc ataattcgcc tggcaatact cggctaccga actctcgaga
      421 cggcgcactt cgtcgcccag cacaaaccgc tgcgactcaa gcacacgctc aattgcgggg
      481 cgcatctcgt ctctgagtga ggcatactgc gcctgtagat ccagaagagg aacgttcata
      541 cactaacagt tacaagttgg gcgaaaggga actttgactc ctgacaacgc aagtatcgga
      601 ggaaacctca ggcggtctcc gatgccgacg catcgcgacc gccgtctgtc tcggtcgagt
      661 aatagttcga cgagtagtaa cccgaataat agtagtccga cgcctcggcc ttcacgttat
      721 taaggaccac gccgaagatg tgcgcgccga cgtcaagcaa ttgctgcttg gctcgacgca
      781 ccaccgcacg cgaactgcgg ccgccatgga ctaccagcat cacaccgtcg accatcgtcg
      841 aaaggatgga tgcgtcagta aacgaaattg ccgggggcga atcgataatg atgtgcgcga
      901 accgctcgct caagtgactg agcagccggc gcatctcttc cgagccgatc agttcagccg
      961 ggttcggcgg caccggaccc gacgtcagga tcttcaagtt cggcgtcttc ggacatttct
     1021 gtagcaggtt gtcgagatct ttttcgcctg aaagccacgt tgtcaggcct tttgaattcg
     1081 gcacttcaaa ctgcgcgtgc aaccgcgggc ggcgcaagtc gcaatcgatg atcaaaactt
     1141 ccgcgccggt ctgcgcgagc atgaacgcgg tgttgattgc cgtcgtcgtc tttccttcag
     1201 acggctggct cgacgtcacg agaattgttt tcggcggctg gcccgctgaa gagagcaaca
     1261 gcgacgtgcg caagtgccga taagcttcgg cgattggcga tctgacgtcg tcgagcatcg
     1321 cgagcgcggt tgactcgccc ggcccgggct tgtggccctg cggcaggctc ttcagattca
     1381 aacgcgcgcc ggcatgacca ccgctcggaa tgagcgcgag cgccggcagg tgaacgtagc
     1441 gatcgacgtc gtcgagtgac ttcactgtgt cgtcgaggaa atcaagcagg aacgccaaac
     1501 cgataccggc aaccaaagac aggacgaacg cgatcatgac gttgcgaacg cgcggcgggc
     1561 cgaccggact gcgcggcacg cggctgtagt tttcgatact gacttcgtta ccgcggtcgc
     1621 cctgggcgat ctgaagctcg cgttgttttt gcagcagcgt gttcaggtat tgcttgttgg
     1681 tttcgagccg ctgcgagaac tcggtcattt cgatctggtc gcgcgtctgc tggttggtgg
     1741 tgccgcgttg ttcgttgtac ctgtcgcgaa cgctgttttc gtgagcaagt gctgcttcgt
     1801 agttcttttg caaaccgagc acggcgtcgt tcgcggcctt gtggacctcg tcgttaagac
//
LOCUS       DASWTX010001399         1869 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_213772, whole genome shotgun sequence.
ACCESSION   DASWTX010001399 DASWTX010000000
VERSION     DASWTX010001399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213772"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1869
                     /locus_tag="VGD38_21220"
     CDS             <1..>1869
                     /locus_tag="VGD38_21220"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0730620.1"
                     /translation="AQAAYTAAKEMGQVASLLDQERPNIFTQAVANIMPGQDIRITIS
                     YVETLKYEDGAYEWSFPMVVRERYISNAEQKFDNSRVNPPPAHGQRAGHDVSLEIQLN
                     AGVPIQSLTSETHETEVERTGDNKAVVRLKDRAAIPNKDFVMKYQVSGNAINDAVLAH
                     RAVRGGFFTLILQPPQRVSAEDVMPKELVFVLDTSGSMSGFPIDKAKETLLLALDNLY
                     PHDTFNLITFARETRILFPDPVPATPENVRKAKKLLKGVDSPGGTEMMTAIRAALDPS
                     DSQQHVRIVCFMTDGAVGADMEILAEVKKHPNARVFSMGFSESPNRFLLDKMAEYGRG
                     EVDYVTDKGDTSAVARRFNERVRNPLLTDLSVDWSGLPVTDVYPKQIPDLFSAKPVIL
                     TGKYTGGSKGTIRLKGRSAGQEFVREIPIELPENEPAHDVLATLWARRRIDDLMAPYM
                     IAINAGKKPEQEKEEITQLGLNFKLMTQFTSFVAVDDTIFTGGEAPQRVDVPVESTVN
                     SSGQISALVMVTAASNSATLTSTTVSTQTLQSLPIMGRSFQRLLMLAPGTVLTDINPA
                     AGSLPVNVSTNGQATTSNLFQVDGVSANFGIAAGGQGAGASAAGMTPGLTASGETN"
BASE COUNT          447 a          538 c          501 g          383 t
ORIGIN      
        1 aggcgcaggc cgcgtacacc gccgcgaaag agatgggcca ggtcgccagt ttgctcgatc
       61 aggaacggcc caacatcttt acccaggccg tggccaacat catgccgggc caggacattc
      121 gcatcactat cagttacgtc gagacgttga aatacgaaga tggtgcttac gaatggtcgt
      181 ttccgatggt cgttcgcgaa cgctacattt ccaatgccga acagaagttt gataactccc
      241 gcgtcaaccc acctcccgcc catggccagc gtgccggtca tgatgtttca ctcgaaattc
      301 agttgaatgc cggcgtgccg atccaatcac tcacttccga aacacacgaa acagaagttg
      361 agcgtacagg cgataacaaa gcagttgttc gtctgaagga tcgcgccgca attccgaaca
      421 aagatttcgt gatgaagtat caggtttccg gtaacgcgat caacgatgcc gtcctcgccc
      481 accgagccgt caggggtggc ttcttcacac ttatcctcca gccaccccag cgcgtttcag
      541 ccgaagacgt gatgccgaag gaactggttt ttgttcttga tacgtcggga tcgatgtccg
      601 gttttcctat cgacaaagca aaagaaacgc tcctgttggc gctcgacaat ctctatccgc
      661 acgacacatt caacttgatc acctttgccc gagaaaccag aattctcttt cccgatccgg
      721 ttccggcaac acctgaaaat gtgcgtaagg cgaagaagct gctgaaaggc gttgacagcc
      781 caggcgggac cgagatgatg actgcgatca gggccgcgct cgatccctcc gactcacagc
      841 aacacgtgcg tatcgtctgt tttatgactg acggcgctgt cggcgccgat atggagatcc
      901 ttgccgaagt aaagaagcat ccgaacgcgc gcgtcttctc gatgggcttc agcgagtcgc
      961 ccaatcgttt tctgctcgac aagatggccg agtacgggcg cggtgaggtc gactacgtta
     1021 ccgacaaggg cgacacgtca gcggtcgcgc gccgcttcaa cgaacgcgtg cgcaatcctt
     1081 tgctgactga tctgtcagtt gattggtctg gtctaccggt tactgacgtc tatccaaaac
     1141 agattcccga tctctttagc gcgaagccgg tgattctcac cggaaaatat accggcggaa
     1201 gcaaaggcac gattcgtctc aaaggccgga gtgcggggca ggagtttgtt cgtgagattc
     1261 cgatcgagct gccggagaac gagccggctc acgacgttct tgctacgctt tgggcgcgcc
     1321 gcagaatcga cgatctgatg gcgccgtaca tgatcgcaat caacgcgggc aaaaaaccgg
     1381 agcaggaaaa agaagagatt acgcaactcg gtctcaactt caagctgatg actcagttta
     1441 cttcgttcgt agcggtcgac gacacgatct tcaccggcgg tgaagcaccg caacgcgtag
     1501 acgttccggt cgaaagcacc gtcaactcat cgggccagat ctcagcactt gtaatggtca
     1561 cggccgcctc aaactctgca acgctcacaa gcacgaccgt aagcacgcaa acgctgcaaa
     1621 gcctgccgat tatgggccgc agttttcaac gcttgttgat gctcgcgccg ggaacagtct
     1681 tgacagatat aaaccccgcc gcaggatcat tgccagtcaa cgtttcaaca aacgggcaag
     1741 ccacaacctc aaatctcttc caggtcgatg gcgtaagcgc gaactttggc attgctgccg
     1801 gcgggcaagg agcaggtgcg tccgcagccg gtatgactcc cgggctgaca gcgagtggcg
     1861 aaaccaatg
//
LOCUS       DASWTX010001400         2486 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_213816, whole genome shotgun sequence.
ACCESSION   DASWTX010001400 DASWTX010000000
VERSION     DASWTX010001400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2486
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213816"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1183)
                     /locus_tag="VGD38_21225"
     CDS             complement(<1..1183)
                     /locus_tag="VGD38_21225"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEY0730621.1"
                     /translation="MTSAAPSNEVFVFPLSFAQQRLWFLHEIDPSSAAYNMPLAFRLS
                     GQLRVSALQWALNEIVGRHEILRTTFDVLDESPVQLIAATGELSLAVTDLSSLPSSLT
                     EAEAERLMSEEAQQPFDLKRGPLIRAMLMRLATDEHVLLVTMHHIISDGWSQTILMNE
                     LGALYEAALAGRDSPLPELPIQYADFAEWQRRWLQGEVLDQQLDYWRKHLTGAPASLE
                     LPADRPRPAVQTFNGARHSFSLSRDLLALVVELSRREDATLFMTLLTAFYVLLHRYTG
                     ETDIVVGTPVANRNRQELEPLIGFFVNTLALRANLSGDPAFRELLAQVRNVSLEAYAH
                     QDLPFDMLVEELSPIRDWSRNPLFQVMFAFQNMPEAASKSLGLTIKPVDVKTTQAQFD
                     LI"
     gene            complement(1180..>2486)
                     /locus_tag="VGD38_21230"
     CDS             complement(1180..>2486)
                     /locus_tag="VGD38_21230"
                     /inference="COORDINATES: protein motif:HMM:NF012759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphopantetheine-binding protein"
                     /protein_id="HEY0730622.1"
                     /translation="NYIREQLQRPGSALPQVSLFEQNADDFTNIEPASFDAVIINSVV
                     QYFPGVDYLIRVLRGAVEAVAPGGFIAIGDVRSLPLLKTLHESIERHKAARGISLEQL
                     QQRVERRIEQEEELLIDPAFFMALKQHLPRVSHVEVEPKRGRYHNELTKFRYQVMIHV
                     QKAVAAEELAWIDWREVRWDLTELRRRLVQDKPQTLALANVANARLGEGIDPEDLYKL
                     PYHVHLSWVRHGADGSFDVAFTQSSRTVQFPFESDAAKSLSDYVNHPLRGKQARQFGP
                     QLRNFLKARLPEHMVPASFVVLDELPLLPNGKIDRRALPAPEAIRPDLPHAFVAPRTS
                     IEQSLAAIWSDLLGVPQIGIHDNFFDLGGHSLLTTQLISRVREQFNVDLPLRQVFQQP
                     TIAALATSIVQTENNRTPSELPKIVRVDRAARRLTRPTGSSQ"
BASE COUNT          515 a          702 c          754 g          515 t
ORIGIN      
        1 gtatgagatc aaactgcgcc tgcgttgtct ttacgtcgac cggcttgata gtgagtccga
       61 gtgactttga agcagcttcc ggcatgttct ggaacgcaaa catcacctga aagagcggat
      121 tgcggctcca gtctctgatc ggactcaact cttcgaccag catgtcgaac ggcaggtcct
      181 gatgcgcgta agcttcgagc gagacgttgc gcacctgggc caacaattcg cggaacgccg
      241 gatcgcccga gagatttgcg cgcaaagcga gtgtgttgac gaagaaaccg atcagcggct
      301 cgagttcctg tcggttgcgg tttgcgaccg gcgtgccgac cacgatgtcc gtctcgcccg
      361 tgtaacggtg aagcagcaca taaaacgctg tgagcagcgt catgaaaaga gtcgcgtctt
      421 cacggcggct caactccacg accagcgcta ataagtcacg cgagagtgaa aacgaatgtc
      481 gcgcaccgtt gaaagtctgc accgcaggtc gcggccgatc tgccggcagt tcgagcgacg
      541 cgggcgcgcc ggtgagatgt ttccgccagt agtcgagttg ttggtccaac acttcgccct
      601 gtagccacct gcgctgccac tcggcaaagt cggcgtactg gattggcaat tcaggcaacg
      661 gcgagtcgcg cccggcgaga gcggcttcgt aaagcgcacc caattcgttc atcaggatcg
      721 tttgcgacca tccgtcgctg atgatgtgat gcatcgttac gagcagcacg tgttcgtctg
      781 tagcgagccg catcaacata gcgcggatga gtggaccgcg tttcagatca aacggctgtt
      841 gcgcctcttc gctcatgagc cgctcggctt ccgcttcggt gagcgatgat ggaagcgaac
      901 tcagatccgt aaccgctaac gacagctctc cggttgcggc gattaattgc accgggcttt
      961 cgtccagcac gtcgaacgtg gtgcgcaaga tctcatggcg gccgacgatc tcgttgagag
     1021 cccattgcag agcgctcacc ctgagctgac ctgagagccg gaacgcaagc ggcatgttgt
     1081 acgccgcgct cgatggatcg atctcatgca ggaaccacag gcgctgctgt gcgaaggaca
     1141 gcggaaagac gaaaacctcg ttggacggtg cagcggaggt cattgagatg atcccgtggg
     1201 tcgcgtcaaa cgccgggctg ctcgatcgac gcgaacgatc ttcggcagtt cgctgggcgt
     1261 cctgttgttt tccgtttgca cgatcgaagt tgcgagcgcg gcgatcgtgg gttgttggaa
     1321 cacctggcgc aacggcaggt ccacgttgaa ctgctcgcgc acgcgagaga tgagttgtgt
     1381 ggtgagcagc gagtgaccgc cgagatcgaa gaagttgtcg tggattccga tctgcggcac
     1441 gccgagcaag tcggaccaga tggcagcgag cgattgttcg atgctcgtgc gtggcgcgac
     1501 aaaggcgtgc ggcaggtccg gcctgatcgc ttcgggtgcg gggagtgcgc ggcgatcgat
     1561 cttgccgttg ggcaacaacg gcaactcgtc gagaaccacg aacgatgcgg gcaccatgtg
     1621 ttcggggagt cgtgctttca agaagttgcg taattgtggt ccaaactgtc gcgcctgttt
     1681 tccacgcagc ggatgattca catagtcgct cagcgatttc gccgcgtcgg attcgaacgg
     1741 aaactggacc gtgcgcgagc tttgcgtgaa ggccacgtcg aagcttccat ccgcgccgtg
     1801 cctgacccaa ctgagatgga cgtgatacgg cagcttgtac aggtcttcgg gatcgatacc
     1861 ttcgccgagt cgtgcattcg cgacgttagc caatgcgagc gtttggggtt tgtcttgaac
     1921 gagccggcgg cgaagctccg ttagatccca acggacttcg cgccaatcga tccatgccaa
     1981 ctcttccgcg gcgacggcct tctgaacatg aatcatcact tgataacgaa acttcgtgag
     2041 ctcgttgtga taacgaccgc gtttcggttc cacttcgacg tgactgactc tcggcaggtg
     2101 ctgcttgagc gccatgaaaa aggcgggatc gattagcaac tcctcctctt gttcgatgcg
     2161 tcgctcgaca cgttgctgca actgctcaag cgagatccca cgcgcagctt tgtggcgctc
     2221 gattgactca tgcagagtct tcagcaacgg caagctacga acgtcaccaa ttgctataaa
     2281 gccacccggc gcaaccgcct caactgcgcc gcgcaagaca cggatgagat agtcaacacc
     2341 gggaaagtac tgcaccactg agttgatgat caccgcgtcg aacgacgcgg gctcgatgtt
     2401 cgtgaagtcg tccgcgttct gctcgaacag cgacacctgc ggcaacgcgc taccgggcct
     2461 ttgcaactgt tcgcgaatgt aattca
//
LOCUS       DASWTX010001401         2408 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_148709, whole genome shotgun sequence.
ACCESSION   DASWTX010001401 DASWTX010000000
VERSION     DASWTX010001401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2408)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2408)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2408
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148709"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..207
                     /locus_tag="VGD38_21235"
     CDS             <1..207
                     /locus_tag="VGD38_21235"
                     /EC_number="3.1.3.27"
                     /inference="COORDINATES: protein motif:HMM:NF016489.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008962 - phosphatidylglycerophosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HEY0730623.1"
                     /translation="LLPLSLLATPGRAGIILSFILFRLFDIFKPYPARRFERLRSGLG
                     IMADDLVAGFYGAVGPALVMLIWR"
     gene            212..373
                     /locus_tag="VGD38_21240"
     CDS             212..373
                     /locus_tag="VGD38_21240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730624.1"
                     /translation="MDTLKKRQDEATSKETLKDLEEASEDTGADSSDGPSPDGALDES
                     DELKDADPT"
     gene            complement(370..1380)
                     /gene="corA"
                     /locus_tag="VGD38_21245"
     CDS             complement(370..1380)
                     /gene="corA"
                     /locus_tag="VGD38_21245"
                     /inference="COORDINATES: protein motif:HMM:TIGR00383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015087 - cobalt ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006824 - cobalt ion transport [Evidence
                     IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HEY0730625.1"
                     /translation="MEILVYRNGQQKISEGFTADQLPELLQEPGAVIWVDMEKPTEAD
                     EQVLLDVFDFHPLTVEDCRENRHYPKIEEFPGYIYFIVHGVRADTSPDRFNTIELDGF
                     LGPNYVITYHHDFFRSIANVKQLLRTSPIACRRGPAFLLHQILDQVVDYYSPVLDDFD
                     TRIDELEHEIFNLTRPNNVILAEIMDLKRSVLRLRRISNKQMDIILRMSRGEFVLIPD
                     EMRPFYRDIYDHIVRVTDLAESYRDLIGGSLEAYLSVVSNRMNEIMKVLTVFSAIMLP
                     LTFIAGIYGMNFDNMPELHTRYGYFGALAVMGVVAFGMLIFFWRRGWLGRSSREERET
                     PD"
     gene            1491..>2408
                     /locus_tag="VGD38_21250"
     CDS             1491..>2408
                     /locus_tag="VGD38_21250"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacid dehydrogenase"
                     /protein_id="HEY0730626.1"
                     /translation="MKVFVADDVSDSGLEPLRAAGFNVEKQTGLTGQALVQALKDCEG
                     LIVRSETKVTADLLASVNSLRVIGRAGVGVDNIDVPAATIRGVVVMNAPDGNTITTAE
                     HTIALLISLARSIPQANSSLKAGRWERKKFIGVELQGKTLGIVGLGRIGRVVASRARA
                     MGMLIVAYDPFIAPEQARDLEIELAPLDEVYVRADFLTVHTPLTAETRGLISREVLAI
                     MKRGARIINCARGGLVDEDALYEAITNGTIAGAALDVFVQEPPSSEHPLLKLDQVIVT
                     PHLGASTTEAQEGVAFTVAEQMRDFLLTGA"
BASE COUNT          515 a          644 c          738 g          511 t
ORIGIN      
        1 ttgctgcctc tctcattgct cgcgactccg ggcagagccg ggatcattct ttcgtttatt
       61 ctttttcgtc tttttgacat cttcaaacct tatcctgcac gacggtttga gcggctacgc
      121 agtggtctgg gaatcatggc ggacgacttg gtggctggat tctacggcgc ggtgggacca
      181 gcgctggtaa tgttgatctg gaggtaaagg tttggacaca ctaaaaaaga gacaagacga
      241 agcaacgagc aaagagactc tgaaggatct ggaagaggct tcagaagaca ccggcgcgga
      301 ctcttcggat ggaccaagtc ccgatggtgc tttggatgag agcgacgaac tgaaggacgc
      361 cgatcccacc tagtccggcg tctcgcgttc ctcacggctg ctacggccga gccagccgcg
      421 ccgccagaaa aagatcagca ttccaaacgc gaccacgccc atcacggcca acgcgccgaa
      481 gtaaccataa cgcgtgtgca gctccggcat gttgtcgaag ttcatgccgt agattccggc
      541 gatgaacgtc aacggcaaca tgatggccga gaacacggtc aacaccttca tgatctcatt
      601 catccggttc gacaccaccg acaaataagc ttcaagcgag ccgccgatca gatcgcgata
      661 gctctccgcg agatccgtca cgcgcacgat gtgatcgtaa atgtcgcgat agaacggccg
      721 catttcatca ggtatcagga caaactcgcc gcggctcatg cgcaggatga tatccatctg
      781 cttgttcgaa atgcggcgca agcgcagcac gcttcgtttc aggtccatga tctcggccag
      841 gatgacgttg ttcggccgcg tcaggttgaa gatctcgtgc tcgagttcgt cgatgcgcgt
      901 gtcgaagtcg tccagcaccg gcgagtagta atcgaccacc tggtccagga tctggtgcaa
      961 caggaatgcg ggtcctcgcc ggcaagcgat cgggctcgtg cgcagcagtt gtttgacgtt
     1021 ggcgatgctg cggaagaagt cgtgatggta agtgatcacg tagttgggac cgagaaagcc
     1081 gtccagctcg atcgtgttga aacgatccgg gctcgtatcg gcgcgcacgc cgtgaacgat
     1141 gaaataaatg taacctggaa actcttcgat cttcggatag tgacggttct cgcggcagtc
     1201 ttcgaccgtc aatggatgga aatcaaagac gtcgaggagc acctgttcgt cagcttcggt
     1261 gggcttttcc atgtcgaccc agatgacggc ccccggttcc tgcaggagtt ccggaagctg
     1321 gtccgccgtg aagccctcgc tgatcttctg ctggccgttc cggtaaacga gaatttccat
     1381 cagttatctc ctccgaagcg gtatctgtta ccatacggcc tttttactgg caagcattta
     1441 gatctcgcgg gagtgtagaa gagtagcagc caatgtcaat gagtgcgtcg atgaaggttt
     1501 ttgtagccga tgatgtgagc gacagcggac tcgagccgtt gcgcgcggct ggtttcaatg
     1561 tcgagaagca aaccggtcta actggtcagg cgctggtcca ggcgttgaag gattgcgaag
     1621 gtctgatcgt tcgcagtgaa acaaaagtga ctgcggatct gttggcgagt gtgaacagct
     1681 tgcgcgtgat tggccgggcg ggcgtcggcg tcgacaacat cgacgtaccg gcagcgacga
     1741 ttcgcggcgt cgtggtgatg aacgcgcccg atggcaacac gatcacgacg gccgagcaca
     1801 cgattgcttt gttgatttcg ctggcgcgct cgattccaca agccaatagc agtttgaaag
     1861 ccgggcgttg ggagcggaag aagttcattg gcgttgaact tcaaggcaag acgctgggca
     1921 tcgttggtct gggacgcatc gggcgtgtcg ttgcttcgcg cgcacgcgcg atgggcatgt
     1981 tgattgtcgc ttacgatccg ttcatcgcac ccgaacaggc gcgcgatttg gagattgagc
     2041 tggcgccgct cgacgaggtt tatgtacgcg ccgacttcct gacggtacac acaccgctaa
     2101 cggccgaaac tcgcgggcta atcagtcgcg aggtgttggc gataatgaag cgtggcgcac
     2161 gcatcatcaa ctgcgcgcgc ggcgggctgg ttgacgaaga cgcgctttac gaagcgatca
     2221 cgaacggaac gattgcgggc gcggcgctcg acgtgttcgt ccaggaaccg ccgtcgagcg
     2281 aacatccgtt gctgaaactg gatcaggtga tcgtcacgcc gcacctcggc gcctcgacga
     2341 ccgaagcgca ggaaggcgtt gcgttcacgg tcgccgagca gatgcgcgac tttttgttga
     2401 cgggcgcg
//
LOCUS       DASWTX010001402         4903 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_148772, whole genome shotgun sequence.
ACCESSION   DASWTX010001402 DASWTX010000000
VERSION     DASWTX010001402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4903)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4903)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4903
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148772"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1464)
                     /locus_tag="VGD38_21255"
     CDS             complement(<1..1464)
                     /locus_tag="VGD38_21255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730627.1"
                     /translation="MCLTGVDYFSTLGYQPGIAFLAAGALSPLATLVLIFLTLFGALP
                     MYRRVAAESPHGDGSISMLENLLSRWKGKLFVLALLGFATTSFIITITLSAADATAHI
                     VENPFVLDHTNFMHHRIIVTLVLIAALGAIFLRGFKEAIGIAVVLVAIYLVLNLAIIA
                     VGFYEIATHPSVFANWRTALFQTYRSPFLMIGMALVVFPKLALGLSGFETGVVVMPLV
                     RGLGLEGRIHNTRKLLTAAALIMSFLLFASSIVTTLLIPPEAFQPETDTHEAGSANGR
                     ALAFLAHEYLGHYFGTAYDISTISILWFAGSSALAGLLNIVPRYLPRYGMAPEWARAT
                     RPLVVVFTGICFVVTILFRADVDAQGGAYATGVLALMTSAAIAVTLSARRNNERVQWA
                     FMLISLVFVYTTIVNIVEQPEGIKIAIIFIGAIVVSSLFSRVWRSTELRVERVELDDK
                     AREFIRKAAKGTVRIITNRIDRGDVQEYEAKENEKRLD"
     gene            complement(1929..2177)
                     /locus_tag="VGD38_21260"
     CDS             complement(1929..2177)
                     /locus_tag="VGD38_21260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730628.1"
                     /translation="MNRKTVADDRRRRKMMTLAWALGLAAVVIALIYLERTAILYILC
                     TLGVTALLLVVAFSDLAHADERQGQMDQTKDAAGVANR"
     gene            complement(2222..3268)
                     /locus_tag="VGD38_21265"
     CDS             complement(2222..3268)
                     /locus_tag="VGD38_21265"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HEY0730629.1"
                     /translation="MKVKQCLIVAIACACMLAGFSHAQEPQQQASTSSAQSAAMDIQG
                     SKAYLLGPGDVLDIRVFGQPELSTATAQIDSDGNLSSLPFLEQPIPAKCRSDKEVQKD
                     IALAYAKFINNPQVSVRIAERNSRQPATVFGAVRQSARVEMKRRVRLNELIAVSGGFT
                     ERASGTIQILHTEPLMCPGPGEEEEAKPIDGTKIPLQIVKISELRAGKLEANPIIRPG
                     DYVLVTEAEPVYIYGAVVSPNGVYLREQMTLTRALAMVGGTRGEAKLSEVAIYRQVPG
                     SSQQEKKIYDVSAIRKNKAEDPLLQAYDIIEVPEAGIFSKQRIGPTLLGAITGGFSNA
                     VSSTGMYLPNKVIY"
     gene            complement(3473..4366)
                     /locus_tag="VGD38_21270"
     CDS             complement(3473..4366)
                     /locus_tag="VGD38_21270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730630.1"
                     /translation="MPSSTGYLTIAIVASGGLFLLLWWMLVRGGDEAPWLPAGLAASV
                     VLLVALSAREVVMRRAWTRYLLENGIQDPRSKTKSRSSHSSRSSKKGFSSSVHSAALR
                     NIQKHSAAADAPNSPPETHLDVAHLCQEYLAGTDEAIRSGSYGSEQGIAIRAGQERVR
                     SLHKHHLLTWARGQSRLLTYEAQQRARTFDKIETANRALDCVDSTLRIYPEEPELHES
                     KVAISEFIASVKVAHWVELAERSAFKGHYRRAIDRYRDALFYLNQDVVKPDVRVAGTQ
                     KIELEIAKLQAKLPQRSSPNE"
     gene            4603..>4903
                     /locus_tag="VGD38_21275"
     CDS             4603..>4903
                     /locus_tag="VGD38_21275"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY0730631.1"
                     /translation="MNDKRFAGKVALVTGATSGIGQACAIAFATAGAKVACVGRKETA
                     LEEVIERIRALDSEALAIQADLSSSAEAERAVSETVKAFGGLDVLVNAAGHISSGT"
BASE COUNT         1081 a         1422 c         1351 g         1049 t
ORIGIN      
        1 gtcgagccgt ttctcgttct ctttcgcttc gtactcctgc acgtctccgc gatcgatgcg
       61 gttcgtgatg attctcaccg tccccttggc ggccttgcgg atgaattcgc gcgccttatc
      121 gtcaagctct acgcgttcaa ctctcaattc agtcgagcgc cacacccgcg agaagagcga
      181 actgacgacg atggcgccaa tgaagatgat cgctatcttg attccttccg gctgttcgac
      241 gatgttcacg atcgtcgtgt aaacaaacac gagcgagatc agcatgaacg cccactgcac
      301 tcgttcatta ttccggcgcg cggaaagcgt cacagcgatc gccgcggaag tcatcagcgc
      361 cagcacgccc gtcgcgtaag cgccaccctg cgcatcgacg tcggcgcgga agagtatcgt
      421 caccacgaaa cagattcccg tgaatacaac aacgagcggc cgcgtcgccc gcgcccactc
      481 cggcgccatg ccgtatcgcg gcaaataacg cggcacgata ttcagcaagc ccgcgagcgc
      541 cgacgaaccc gcaaaccaga gaatcgagat cgtgctgatg tcgtacgcgg tgccgaaata
      601 atgaccgagg tattcatggg ccagaaacgc gagcgcacgt ccattcgcgc tgcccgcttc
      661 gtgtgtgtca gtttccggtt gaaacgcctc gggtggaatg agcaacgtcg taacgatgct
      721 gctggcgaac aacagaaaac tcatgatcaa cgcggcagcc gtaagcaact tgcgcgtgtt
      781 gtgaatgcgg ccttcgagtc ccagcccccg caccagcggc atcaccacca cgccggtttc
      841 aaaaccagac agaccaaggg cgagtttcgg aaacaccacc agcgccattc cgatcatcag
      901 gaacggactg cggtaagttt gaaacagcgc ggtgcgccag ttcgcaaaca ccgaaggatg
      961 cgtcgcgatc tcataaaacc cgaccgcgat gatcgccagg ttcagcacca gatagatcgc
     1021 gaccagaact acggcgattc cgatcgcctc cttgaatcca cgtaaaaaga tcgcgcccaa
     1081 cgcagcaatc agcaccagcg taacgatgat gcgatggtgc atgaaattcg tgtggtctag
     1141 aacgaacggg ttttcgacga tgtgcgccgt cgcgtccgcg gcggacagcg tgatggtgat
     1201 gatgaaactg gtagtggcaa agccgagcaa agcgagaaca aagagttttc ccttccagcg
     1261 cgacaagaga ttctcgagca tcgagatcga gccgtcgccg tgcgggctct ctgccgccac
     1321 gcgccggtac atcggcagcg cgccgaataa cgtcaaaaaa atcaggacta atgttgctag
     1381 tggcgagagt gcgccggcgg cgaggaacgc gatgcctggt tgataaccga gtgttgaaaa
     1441 ataatcgaca ccggtgaggc acatcacctg ccaccacggg tgttgtttgt gtggagtcga
     1501 cgattcgtgc gcggtaccgc ttgttcttct gccctctaaa agccagagct taaacttgcg
     1561 ccgcgatctc tggagcagcc ccattttttt cgtcagtcaa cgtcgaggtt caattcacat
     1621 aacccgcagc gccgcgatga aaactagagc gcacaaaaaa agcgggcggg ggcctcccac
     1681 agcccccacc ctaaggccac gtgtcctcac cccacgcgac cacttcgtcc accggggagg
     1741 tgaacgcatc gggattatgc aatagtccgc ttaaactttc aaccgcctta ttgattttgt
     1801 ccggcacaca atacgtcatg tcaacgaatg tatgacgcaa caaaatttat agaccacata
     1861 agcaacttcg attcagccgc tcaatcagcg atcaatcgca caaagacttg cactctctgc
     1921 gtccaacttc accggtttgc aacacctgct gcatcttttg tctggtccat ttgtccctgg
     1981 cgttcgtcag catgcgccag atcggagaac gccaccacga gcagcaacgc tgtcactccg
     2041 agagtgcaga ggatgtatag gatcgccgtt ctctcgagat agatcagcgc gattacgact
     2101 gctgcgaggc caagcgccca tgcgagcgtc atcatttttc tgcgacggcg atcgtcagca
     2161 actgtttttc gattcattcg ctagttcaac tttcagttat ttcgttggcc gtctacagac
     2221 tttagtagat gaccttgttt ggcaaataca ttccggtcga agagacggcg tttgaaaagc
     2281 cgccggtgat tgcgcctaga agtgtcgggc cgatgcgctg cttcgaaaaa atcccggctt
     2341 ccggtacttc gatgatgtcg taggcctgta acagcgggtc ttccgccttg ttcttcctga
     2401 tcgcggacac atcgtaaatc tttttttcct gctgcgaact accggggacc tggcgataaa
     2461 tggcgacttc actcagcttc gcttcgcctc tcgttccacc caccatcgcc aacgctcgcg
     2521 tgagcgtcat ctgttcgcgg aggtaaactc cgttgggcga aaccactgcg ccgtagatat
     2581 aaaccggctc agcttcagtc acgagcacat aatcgccggg gcgaattatg gggttcgctt
     2641 cgagcttgcc ggcgcgcagt tcggagatct tcacgatctg gagcggaatc ttcgtcccgt
     2701 cgatcggctt ggcctcttcc tcttcaccgg gaccgggaca catcaatggt tcggtgtgca
     2761 ggatctggat cgtgccggaa gcacgttcag taaaaccgcc cgaaacggcg atcagttcgt
     2821 tcaaacgaac tctgcgcttc atctcgacgc gtgcggactg gcgcacggcg ccgaagaccg
     2881 ttgccggttg gcggctgttg cgctctgcga tccggacgct gacttgcggg ttgttgatga
     2941 acttcgcgta agcaagcgcg atgtctttct gaacttcctt gtcggaacgg cacttcgccg
     3001 ggatcggttg ttccaaaaac ggcagcgagc tcaggtttcc atcgctgtcg atctgggccg
     3061 tcgcggtcga caactccggc tggccaaaca cgcggatgtc gagcacgtcg cctggtccaa
     3121 gcaggtaagc tttacttccc tggatatcca tcgcggcaga ttgagcgctt gatgtggaag
     3181 cttgttgttg aggttcctgc gcgtggctaa aacccgcgag catgcaggca cacgcaatgg
     3241 caacaatcaa acactgctta actttcatca cattacctca ctgaagaagt tttcttgtgc
     3301 cggcggtgtt ttcttcgccg gctgaaggtc ccaggcaata caaagccggt aaaaagcaag
     3361 ttgcaatgat cgcacaaaag gtggtagatg ccaaccagac gcatcggcag cggggtacgc
     3421 ttgtatcccc tgcgaattct tgagcttcca catttgggac acttctgaaa cgtcattcgt
     3481 ttggactact gcgctgcggc aattttgcct gcagtttggc gatttcgagt tcgattttct
     3541 gcgttccggc aacgcgtacg tcgggcttca ccacgtcctg gttcagataa aagagcgcat
     3601 cgcgatagcg atcgatcgcc cggcgatagt ggcccttgaa agccgaacgt tcggccagct
     3661 ccacccagtg tgcaacctta actgaagcaa taaactcgct gattgcgact ttcgactcgt
     3721 gaagctccgg ctcttcaggg tagatgcgga gcgttgagtc gacacaatcc aacgcgcgat
     3781 tcgccgtttc gatcttatcg aacgtgcgcg cgcgttgctg cgcttcgtaa gttaacaaac
     3841 gcgactgtcc cctggcccac gtcaacaagt gatgtttgtg cagggagcgc acgcgttcct
     3901 gtcccgcgcg aatcgcgatt ccctgttcgc taccgtagct ccccgagcga atcgcttcgt
     3961 cagtacccgc gagatattcc tggcaaagat gcgctacgtc gagatgcgtt tccggcgggg
     4021 agtttggagc gtccgcggca gccgaatgct tctgaatatt ccgcaaagca gccgagtgaa
     4081 ctgaagacga aaagcctttc ttgctactgc ggctgctgtg tgaagaacga ctctttgttt
     4141 ttgaccgcgg gtcctggatg ccgttttcga gcaggtaacg tgtccacgcg cggcgcatca
     4201 ctacttcgcg tgctgacagc gcaaccagca acaccacgct cgcagccaaa cccgccggca
     4261 accacggcgc ctcgtctccg ccgcgtacga gcatccacca aagcaaaagg aacaagccgc
     4321 cggatgcgac aatcgcgatc gtcaggtaac cggtgctcga aggcattcgg ccgcgcgcgg
     4381 gtcgatggcg cagatcgtcg ggacctcgcg aatgcgttcg cgggttgcga gggaaaaact
     4441 ggtctgctga gttgtttccc aaaactcacc cttaactttt tgcgcactgt acccgggggg
     4501 atggcctcac aagcctctca gggtgataat agtcggcttt ttgggattgt gctgtcaaca
     4561 cacgatctct tccattcaaa acacagacga ggactcggga aaatgaacga taagagattt
     4621 gcgggcaagg tcgcgctggt gactggcgcg acttccggaa tcggacaggc ctgcgccatt
     4681 gctttcgcaa cggcaggcgc aaaagtggcg tgtgtagggc gaaaggaaac cgcgctggag
     4741 gaagttatcg aacgcattcg cgcgctcgat agcgaggccc tggcaattca ggcggatctt
     4801 tcttcttcgg ccgaggcgga gcgtgcggtt agcgagaccg tgaaggcgtt cggcggcctc
     4861 gatgttctcg ttaatgcggc gggacacatc agcagcggca cga
//
LOCUS       DASWTX010001403         2934 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_86092, whole genome shotgun sequence.
ACCESSION   DASWTX010001403 DASWTX010000000
VERSION     DASWTX010001403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2934)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2934)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2934
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86092"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..760
                     /locus_tag="VGD38_21280"
     CDS             <1..760
                     /locus_tag="VGD38_21280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730632.1"
                     /translation="WPLVIMAIAYLGVVTSESLRRRKLLVLAQPLERTGVFLPLLPVL
                     GFWLASSEVDFSLLLFVVGGLYGLLSILRRSFVFGLMAAVAGNGGLWYILHRTDDYQF
                     LQHPQLWLIPIALSALLAAYLNEEDLTEDQMAGIRYLSLVTIYVSSTADIFINGVANS
                     PWLPLILGSFSLAGVFSGIIFRIRGLLLLGSVFLLLSIVTMIWYASANLGWTWLWYVA
                     GIVTGATIIFMFAVFEKKRSEVLRLVEGLKEWER"
     gene            complement(761..>2934)
                     /locus_tag="VGD38_21285"
     CDS             complement(761..>2934)
                     /locus_tag="VGD38_21285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730633.1"
                     /translation="HDLHESVPYLYDNTIGDGPYNAWVDPILTDEWQMIGWNNVSEMT
                     KFGMPGVFAHGNFDTWSPGYLMFIAATHNGISRLYETFGNAGADTLERTLSPSEYQRT
                     WFRQNPPLPKTKWSQRNNNNYQQTALLTTMHYFANNSKLFLKNFYLKSKRSIEKPKNE
                     GPAAYVLPGDELRVGNQAELLRTLQMQGVEISKATAPFTVSVRKKSGSTSTPSQRASA
                     TQSPVPASKTEDRTFPAGSYIVRMDQPYSRIADALLDYQYWAPNDPQQDIYDDTAWTM
                     GELANVEVVRVVDTKVLTAPMDRVTGEVRSPGGVANAGSVFLINHNADNALITFRYRL
                     KEVEMDAAEEPFEAAGRKFNRGSFIIRRANSDDLRRVANELGIQVYAVNEAPSVRTHP
                     IRAPRIAMMHTWINTQDEGWYRIGLDHLQVPFTYISTQDVSRDPSLKTKYDVILFAPV
                     SRGGPLAIINGMPMYGNPIPWKKTQLTPNLGAIDETDDIRPGLGWSGLQNLQKFVKDG
                     GVFITVDDTSDFAVNYGFTAGVTVTRSQRLRAVGAILRTKTVDSASPIVYGYGDSLAM
                     YCSNGPIYNINNGVGGRGPRNQPRATGRGTPDDPDVPQGRPPAELPDPPPRVEAWEAP
                     PVTAEQLRNAIGLIPPNQRPRVVLRYADSRDLFVSGLLDGGDEIAQRAAIIDVPSGNG
                     HVLLFSTNPFWRGQTKGSYFLVFNAILHWDSLNAGRKLAER"
BASE COUNT          508 a          825 c          914 g          687 t
ORIGIN      
        1 ttggccgctc gtgatcatgg cgattgctta tctcggcgtg gtgaccagcg aatcactgcg
       61 gcggcgaaag ctgctggtcc tggcccaacc gctggaacgc accggagtgt tcttgccgtt
      121 gctgccggtg ctcggtttct ggctcgcttc gtctgaagtc gacttctcgt tactgctgtt
      181 tgttgtcggc ggtctttatg gactgctctc gatcctgcgg cgctcatttg ttttcggact
      241 gatggccgcg gtcgcgggaa acggcggtct ctggtacata ctccatcgca cagacgacta
      301 ccagtttctc caacatccgc agttgtggct gatcccgatc gcgctctccg cgctgctcgc
      361 cgcgtatctg aatgaagaag atctcaccga agatcagatg gccggtatca ggtacttgtc
      421 gctcgtcacg atctacgtct cgtcgacggc cgacatcttc atcaacggcg tcgctaattc
      481 gccgtggctg ccgttgatac tcggatcgtt ctcgctggcg ggtgtctttt caggaatcat
      541 cttccgcatc aggggcttgc tgctgttggg ctcggtgttt ctgttgctct ccatcgtgac
      601 gatgatctgg tatgcgtcgg cgaacctggg ctggacgtgg ttgtggtacg tcgccggtat
      661 cgtgacgggc gctacgatca tcttcatgtt tgcggtattc gaaaagaagc gcagcgaagt
      721 gctgcgcctc gtcgaaggtt tgaaggaatg ggaacgctga ttaccgctcg gccagctttc
      781 gtcctgcgtt gaggctgtcc cagtgcagga tcgcgttgaa gaccaggaag taactgcctt
      841 tggtctgtcc gcgccagaag ggattggtcg agaagagcag cacgtgaccg ttcccggaag
      901 gcacgtcgat gattgccgcg cgctgcgcga tctcgtcgcc gccgtccaac aggccggaaa
      961 cgaacaggtc gcggctgtcg gcgtagcgaa gcacgacgcg cgggcgctgg tttggtggaa
     1021 tcaggccgat ggcgttgcga agttgttcgg cagttaccgg cggcgcttcc cacgcctcga
     1081 ctctcggcgg cggatcggga agttctgctg gtggacgtcc ctggggtacg tcgggatcgt
     1141 ccggcgtgcc ccggccggtt gcacgcggtt gattgcgtgg accacggcca ccgacgccgt
     1201 tgttgatgtt gtagatcgga ccgtttgaac aatacatcgc gagcgaatcg ccgtagccgt
     1261 aaacgattgg actcgccgag tcgaccgtct tcgtacgcag gatcgcaccg accgcgcgca
     1321 ggcgttgtga acgagtcaca gtcacaccgg cagtgaagcc atagttcacg gcgaaatccg
     1381 acgtatcgtc gaccgtaata aacaccccgc cgtctttcac aaacttctgc aggttctgca
     1441 agccgctcca accgagaccg ggacgaatgt cgtcagtctc gtcgatggcg ccgaggttcg
     1501 gagtgagttg cgtcttcttc cacggtatgg gattgccgta catcggcatg ccgttgatga
     1561 tcgccagcgg gccgccgcgg ctgacgggcg cgaacaggat cacgtcgtat tttgttttca
     1621 gactcggatc gcgcgagacg tcctgcgtgc tgatgtacgt gaacggcacc tgcaagtgat
     1681 cgaggccgat gcgataccag ccttcgtcct gcgtgtttat ccacgtgtgc atcatcgcga
     1741 tgcgcggcgc gcgaatcgga tgtgttctga ctgacggcgc ctcgttaact gcgtaaacct
     1801 gaatgccgag ctcgtttgcg acgcggcgca gatcgtcgct gttcgcgcgt cggatgatga
     1861 acgagccgcg attgaacttg cgccctgcgg cttcgaacgg ttcttcagcc gcatccattt
     1921 cgacttcctt gagccgatag cgaaacgtga tgagcgcgtt gtcggcgttg tgattgatca
     1981 gaaacaccga gcctgcattt gcgacgccgc cgggcgagcg tacttcaccg gtcacgcggt
     2041 ccatcggcgc ggtcaaaact ttcgtatcga cgacacgcac gacttcgacg ttcgcaagct
     2101 cgcccatggt ccaggcggtg tcgtcgtaga tgtcctgctg tggatcgttt ggcgcccagt
     2161 attgatagtc gagcagtgca tcggcgatgc ggctgtacgg ctggtccatg cggacgatgt
     2221 agctgcccgc cgggaatgtg cgatcctcgg ttttggaagc cgggaccggg gattgggttg
     2281 cggacgcacg ctgagagggc gtggaggtcg aaccggattt tttgcggacc gagacggtga
     2341 acggcgcggt tgctttgctg atctcgacgc cctgcatttg cagcgttcgc agcagctcgg
     2401 cctggttgcc tacgcgcagc tcgtcacccg gcagaacgta agccgccgga ccttcattct
     2461 tcggtttctc gatcgagcgt ttgctcttca aataaaaatt tttgagaaac agtttgctgt
     2521 tgttggcgaa gtaatgcatg gtcgtcagca acgccgtctg ctggtagttg ttgttgtttc
     2581 tctgcgacca cttcgttttc ggcaaaggcg ggttctgacg gaaccacgtg cgctggtatt
     2641 cgctcggcga cagcgtgcgc tcgagcgtgt cggcgccggc gttgccaaac gtttcgtaca
     2701 aacggctgat gccgttgtgc gtcgcggcga tgaacatcag atagcccggc gaccacgtgt
     2761 cgaaattgcc gtgcgcgaac acgccgggca taccaaactt cgtcatctcc gaaacgttgt
     2821 tccagccgat catctgccat tcgtcggtca ggatcggatc gacccacgcg ttataaggac
     2881 cgtcgccgat tgtgttgtcg taaaggtacg gcactgactc gtgaagatcg tgca
//
LOCUS       DASWTX010001404         8452 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_64877, whole genome shotgun sequence.
ACCESSION   DASWTX010001404 DASWTX010000000
VERSION     DASWTX010001404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8452)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8452
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64877"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..873
                     /locus_tag="VGD38_21290"
     CDS             <1..873
                     /locus_tag="VGD38_21290"
                     /inference="COORDINATES: protein motif:HMM:NF036542.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase-related domain-containing protein"
                     /protein_id="HEY0730634.1"
                     /translation="IDARKIRERSPSFHDHFSQARLFFQSQSEIEQLHIIKALRFELG
                     KVETIPIRKRMLFLLAQVDKELANSVAEGLGEAIPAKLEKPMNMSVPGDMDPKKVQPK
                     RAVEMDVSPALRMIDNPNFPNPTIETRKIAFLVSDGFDDAALLDMKQTLMTAGAVVVT
                     VAPRLGVLRGVNGTEVRADFSFLTGSSVLFDAFYVPDGEASVASLKAQPDVANFLIEA
                     YKHCKTIAASGAGVELLASTGIVTAADEIPRTDKFEFRPGLLATREAYVPGLGDQFVT
                     SIARHRHWEREPAS"
     gene            870..1388
                     /locus_tag="VGD38_21295"
     CDS             870..1388
                     /locus_tag="VGD38_21295"
                     /inference="COORDINATES: protein motif:HMM:NF017970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1003 domain-containing protein"
                     /protein_id="HEY0730635.1"
                     /translation="MKKGTSGPSAEQLTKKNVETVTRLEQAAREQRTPTDRLAEKIAS
                     FCGSMTFVWVNAGWFATWIVINVIPGIPHIDPFPFTFLTLVVSLEAIFLSTFILISQN
                     LDSRISERRSHLDLQLNLLSEQENTKMIVILHAIAAKVGADLSQDPYLKALSEETRPE
                     RLIEQIEARENN"
     gene            1401..1559
                     /locus_tag="VGD38_21300"
     CDS             1401..1559
                     /locus_tag="VGD38_21300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730636.1"
                     /translation="MKHIGIVTLILLFSSGCVVVGGYSSERGWFIWPGTFVILLVVAL
                     LFLFLRRR"
     gene            complement(1574..2824)
                     /locus_tag="VGD38_21305"
     CDS             complement(1574..2824)
                     /locus_tag="VGD38_21305"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0730637.1"
                     /translation="MKYVVAFFLFAVLVPCASAQNKNQIKICKGLPIPDGYLIVGFEP
                     HAACSQGAYVLQNEKLGAAPQSPAVKAMGARERKVNDPIAPKVVENNARPPALKAISL
                     DPPLNEVLASLTAASNKTKEQELSEGDVVRIDTNLVSVPVSVMDRQGRFIGDLLREQF
                     KVFENNVEQKIVHFEPVEKPFTVALVLDTSASTFFHLWEIKEAAIAFAKQLRPQDRVL
                     VVTFDRQVLLLTEATNNHDVVTQTIETNAVSGDTTRLYDAIDLVITQRLNKIDGRKAI
                     VLFTDGVDTSSYKATYQGTLRDVEEGEILIYPIQYDTENFMASVQTPTRSSASPVGDY
                     RAADKYLRLLAEKTGGRLYKANDRAQLANAFSKIAEELSCQYSLAYYPQAALQSGERR
                     QIKVRVDQPNVAVRARESYIKRTR"
     gene            2886..3557
                     /locus_tag="VGD38_21310"
     CDS             2886..3557
                     /locus_tag="VGD38_21310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HEY0730638.1"
                     /translation="MKTGDDSNIEARKRTVLLAGATGLVGRSILEGLLADESVAMVHS
                     FGRRKLSLVHPRLTWHIVDFAALPPLPHVDEVYLALGTTIRDAGSQAAFRAVDFDANL
                     AVARAALSAGAPRCGLVSSMGANAKSRVFYSRVKGELEDALGQLPFSGLVIARPSLLV
                     GDRAELGQAVRPLETVSESVLKVLRPLIPNNYRPINAARVAHALLSRTPVAEGRIILS
                     SGDMQ"
     gene            complement(3566..4327)
                     /locus_tag="VGD38_21315"
     CDS             complement(3566..4327)
                     /locus_tag="VGD38_21315"
                     /inference="COORDINATES: protein motif:HMM:NF013166.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase domain-containing protein"
                     /protein_id="HEY0730639.1"
                     /translation="MTARAANTTSHWFTVPQNDQAKIRLFCFPYAGGTNLIFRTWGKT
                     LGPSIAVCTAHLPGRERRLTEKPYTSALSLVEAAAEAIVPHLDLPFAFFGHSMGALLS
                     FELARHLRRRNLPLPKHLFLSGRSAAQLGVMERVSYNLPADEFAEELRRLNGTPREVL
                     EHQELMELMIPLLRADFQICQTYPYAEEPALDCPITAFGGLDDHDVTREMVGAWREQT
                     TRAFRLLMLPGDHFFVNSAQDRILAIISQELQRTL"
     gene            complement(4330..4563)
                     /locus_tag="VGD38_21320"
     CDS             complement(4330..4563)
                     /locus_tag="VGD38_21320"
                     /inference="COORDINATES: protein motif:HMM:NF015578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbtH family protein"
                     /protein_id="HEY0730640.1"
                     /translation="MSDEREDNTIYKVVVNHEEQYSIWPADRENALGWNDAGKQGTKA
                     ECLAYIEEVWTDMRPLSLRKKMEEQAQKAGEQN"
     gene            4761..5684
                     /locus_tag="VGD38_21325"
     CDS             4761..5684
                     /locus_tag="VGD38_21325"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY0730641.1"
                     /translation="MYDCIVVGGGPAGLSASLFLARYRRRTLTFHDNSPRNEYAHGVH
                     GFLGHHGIRPAELLARGRDEVTSHGGLIVDGCVTEIERRSNNHFRVCVGDMDPDRRTF
                     DARRILLATGLRDVTPDCPGFREFYGYSVHHCPDCDGYECLNKRIAVLGTGTKTVGFA
                     LSLLTWTSNITFINEDKAGLTKDDRAKLAAFDISVRDQSIESLDGDLNSKQLQRILFT
                     DGDSLECDALFFNLGNKPASNLHEMLGCKIDENCGLIWVDQTRQTSVEGVYAAGDITP
                     NSQLAIVAAAEGAMAAIQIHDSLIPSERKPK"
     gene            5854..6303
                     /locus_tag="VGD38_21330"
     CDS             5854..6303
                     /locus_tag="VGD38_21330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730642.1"
                     /translation="MTERGYTQDDVNLIMSDETRKKHFTDDGRETELGSKALEGAGTG
                     AAIGGAVGATLAAIAAIGTTLALPGLGLLVAGPIAAGLAGAGAGGATGGLIGALIGAG
                     IPEERVKHYEEGIKRGGIMMGVKPRNSEDADYFEEDWKRNRGEQVYR"
     gene            6330..6578
                     /locus_tag="VGD38_21335"
     CDS             6330..6578
                     /locus_tag="VGD38_21335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730643.1"
                     /translation="MKRTLVVTCLLAVLGLAGCNGATSNSNTANGNANLNSNTAPANT
                     GVLQNNNGNQNTSGVSPMNSNNANSRPNSNASPGNQND"
     gene            complement(6684..8057)
                     /gene="ltrA"
                     /locus_tag="VGD38_21340"
     CDS             complement(6684..8057)
                     /gene="ltrA"
                     /locus_tag="VGD38_21340"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: protein motif:HMM:TIGR04416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003964 - RNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0000373 - Group II intron splicing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HEY0730644.1"
                     /translation="MSDKRQKNQLELAFTEMSRSEAPRDSAGGTESLVVKREAESKVN
                     EQLMEAVCERSNCEQALARVKSNKGSAGIDGMTVEQLPDYLKKHWPTIREQLLSGTYK
                     PQPVKRVEIPKPDGGVRQLGIPTVLDRFIQQAVMQVLQRSWDPTFSAHSYGFRPGRSA
                     HQAVSKAQQYIAEGYGWVVDMDLEKFFDRVNHDKLMAKLAQRISDKRLLKLVRAFLRA
                     GVLEAGLVSPVDEGTPQGGPLSPLLSNIVLDELDRELEQRGHRFVRYADDCNIYVRSQ
                     RAGERVMKSVSEFITKKLKLKVNDQKSAVSKPSKRKFLGFSFTWHREPKRRIAPKAIA
                     RFKQRVRELTRRTRGVKVETMVTQLSRYLLGWRGYFRFCQTPTVLRKLEEWTRRRLRS
                     VIWKQWKAMRVRFAELTKRGVGKDLAAQTAGSAHGPWRLSNSPALTIALPNAYFASLG
                     LTPLVVN"
BASE COUNT         1779 a         2391 c         2349 g         1933 t
ORIGIN      
        1 atcgacgcgc ggaagattcg tgagcgtagt ccgagctttc acgatcactt cagtcaggcg
       61 cggctgttct ttcagagcca gtctgaaatc gagcagcttc acatcatcaa ggcgttacgt
      121 ttcgagttgg gcaaagtgga aacgattccg atcagaaagc gcatgttgtt cctattggcc
      181 caggtggaca aagagcttgc gaatagcgta gcggaaggac ttggcgaggc tattccagcg
      241 aaactggaga aaccgatgaa catgagcgtt cccggcgata tggatccgaa gaaggtccaa
      301 ccgaagcggg ccgttgagat ggacgtctct cctgcgttga gaatgatcga caatccgaat
      361 tttccgaacc ctacgatcga gactcgtaag attgcatttc tcgtgtcgga tggattcgac
      421 gacgctgctc ttttggacat gaagcagacg ttgatgacgg cgggcgccgt ggtcgtgacc
      481 gttgcgccgc ggctcggagt cttgagaggc gttaatggca ctgaggtcag ggcagacttc
      541 agctttctta ccggctcgtc agttttgttc gacgcgttct acgttcctga cggagaagcc
      601 agtgtggcat cgctcaaagc ccaaccggac gtcgctaact ttttgatcga ggcttacaaa
      661 cactgcaaga cgattgctgc cagcggcgcc ggcgtcgaac tgcttgcgtc taccggcatt
      721 gtgactgctg ctgatgagat tcctcgaacg gacaagtttg aattccgacc gggactcctc
      781 gccactcgcg aggcttacgt ccccggcctt ggagatcaat tcgtaacatc gatcgcacga
      841 catcgtcatt gggagcgtga acctgcttca tgaagaaagg aacgtccggc ccatcggccg
      901 agcagttgac gaagaaaaac gtcgagaccg taaccaggct cgaacaagcg gcgcgagaac
      961 agcggacacc cacagatcgt ctggccgaga agatcgcgag tttctgcggc agcatgactt
     1021 ttgtgtgggt gaacgccggc tggttcgcca cgtggattgt tataaacgtg attccgggaa
     1081 taccgcatat cgatccgttt ccttttacat tcctgacgct cgtcgtttca ctggaagcga
     1141 tctttctctc gacttttatt ctcatcagtc agaacctcga cagtcgcatt agcgaaaggc
     1201 gcagccacct ggacctgcaa ctaaacctgc tgagcgaaca ggaaaacaca aagatgatcg
     1261 tcattttgca cgccatcgcc gcaaaagtcg gcgctgactt gagtcaggat ccctatttga
     1321 aagcgttgag tgaggagacg cggccggaaa gactgatcga acagatcgaa gcgcgggaaa
     1381 acaactaagc tgaggtagca atgaaacaca tcggcattgt cacgttgatt cttctcttct
     1441 cgtcaggctg cgtggtcgtg ggaggttata gcagcgaacg cggctggttt atctggccgg
     1501 gaacgttcgt gattcttttg gttgtggcgc ttttgtttct atttttgcga cggcgctaaa
     1561 agagcgtgcg ttcttagcgc gtccgcttta tgtaactctc tcgtgctctc acggcgacat
     1621 tcggctggtc cacacgcact ttgatctgcc ggcgctctcc actctgcaaa gcagcctgcg
     1681 ggtagtacgc cagactgtat tggcaactaa gctcttccgc tattttcgaa aacgcgtttg
     1741 ccaactgcgc gcgatcattt gccttgtaga gacgtccgcc tgtcttttcc gccagcaaac
     1801 gaaggtattt atcagccgcg cgataatcgc cgacgggtga tgctgacgac cgcgtcggtg
     1861 tttgcacgga agccatgaag ttttcggtgt cgtactggat cgggtagata agaatctctc
     1921 cctcttcgac gtcacgcagc gtgccctgat acgtggcctt gtagctcgag gtatcgacgc
     1981 cgtcggtgaa aagcacgatc gcttttctgc catcgatctt gttcaatcgc tgtgtgatga
     2041 cgagatcgat cgcgtcgtaa aggcgtgtcg tgtcgcccga aacagcgttg gtttcgattg
     2101 tctgtgtgac gacgtcgtgg ttgttcgtcg cctcagtgag caggaggact tgtcgatcga
     2161 aggtcacgac caagacacga tcttgcgggc gcagttgttt tgcaaaagcg atcgctgctt
     2221 ctttgatttc ccacaggtga aaaaacgttg aagcagacgt gtcgagtacg agcgctaccg
     2281 tgaacggttt ctcgacgggt tcgaagtgga caatcttctg ctcgacgttg ttttcgaaaa
     2341 ccttgaactg ttcgcgcagc agatctccga taaaccgtcc ctggcgatcc atgacactca
     2401 cgggcacgct gacaagattg gtgtcgatgc gtacaacgtc gccctcgctg agttcttgtt
     2461 cctttgtctt gttactcgcg gcggtcagcg aagcgagcac ctcgttcaat ggcgggtcga
     2521 gtgagatcgc tttgagcgcc ggtgggcgcg cgttgttttc gacgaccttc ggcgcgatcg
     2581 gatcgttaac cttgcgctct cgcgctccca ttgccttcac tgccggagat tgtggtgccg
     2641 caccaagctt ctcgttttgc agcacgtatg cgccttgcga gcacgcggcg tgtggctcga
     2701 agccgacgat caggtaaccg tcaggaatgg gaagcccctt gcagattttt atctggttct
     2761 tgttttgcgc ggacgcgcaa ggaacgagga cggcgaaaag gaagaaagca accacatatt
     2821 tcatagcttc ttctcctggc tgataacgta ggaagtggcc gccattatag tatgtatgag
     2881 tgattatgaa gaccggcgac gactccaaca tcgaggcgcg aaagcggacg gttcttttgg
     2941 caggcgccac cggactcgtc gggcgttcga ttctggaagg actcctcgcc gacgaatcgg
     3001 tcgcaatggt ccattcgttc ggccggcgta aattgagcct cgttcatccg cggctcacat
     3061 ggcacatcgt cgacttcgct gcgctgccgc ctcttcctca cgtcgacgaa gtttacctgg
     3121 cgctcggaac aaccatcagg gatgccggaa gccaggctgc ttttcgcgcc gtggatttcg
     3181 acgccaatct tgcagttgcc cgcgcggcgt taagcgcagg cgctcctcga tgtggattag
     3241 tcagctcgat gggggcgaat gcaaagtcca gggtgttcta cagcagggtc aaaggcgaac
     3301 tggaggacgc gttggggcag ttaccgtttt cggggttggt tatcgcacga ccgtcgttgc
     3361 tcgtcggaga ccgcgcggag ctcggccagg ccgttcgacc gctcgagacg gtgtccgagt
     3421 cagtgttaaa ggtgctacgc ccgttgatac cgaacaacta tcggcccatc aatgcggctc
     3481 gggtggccca tgcgcttcta agtcgaaccc ccgtcgccga aggccgcata attctgtcct
     3541 ccggcgatat gcaatgacgc ttcgttcaga gcgtgcgctg gagttcctgc gagatgatgg
     3601 cgaggatgcg gtcctgtgcg gagttcacga agaagtgatc gcccggcagc atgaggagcc
     3661 tgaatgcacg cgtggtctgc tcgcgccacg cgccaaccat ctcgcgcgtt acgtcatgat
     3721 cgtctaaccc gccgaacgcc gtgatcggac aatcgagcgc gggctcttcc gcatacgggt
     3781 aggtctgaca aatttgaaag tccgccctca acagcggaat catcaattcc atcaattcct
     3841 gatgttcgag cacttcacgc ggcgttccgt taagccgccg caactcttcc gcaaactcat
     3901 ccgcgggcaa gttgtatgaa acgcgctcca tgacgccgag ttgcgctgcg ctgcggccgg
     3961 agagaaagag gtgtttcggc aacggcagat tacgccggcg caagtggcgc gcgagttcga
     4021 aactgaggag cgcgcccatg ctgtggccaa agaacgcaaa cggcagatcg agatgcggaa
     4081 cgatcgcctc ggccgcggct tcgacaagtg ataacgctga cgtgtaaggc ttctcggtca
     4141 accgtcgttc acgtccgggc aagtgcgccg tgcacaccgc gatcgacggg ccgagtgtct
     4201 ttccccacgt tcggaaaatc aggttcgtac cgcccgcgta ggggaaacag aacaggcgaa
     4261 tctttgcctg gtcgttctgc gggacggtga accagtgaga cgtggtgttg gctgcgcgtg
     4321 ccgtcatgct tagttctgct ctccagcctt ttgcgcctgc tcttccattt tctttcgcaa
     4381 gctcagcgga cgcatgtccg tccacacttc ttcgatgtac gcgaggcatt cggccttcgt
     4441 gccctgcttg ccggcgtcgt tccatccgag cgcgttctcg cggtcggcgg gccagatcga
     4501 atattgctct tcgtggttca ccaccacttt gtaaatcgta ttgtcctctc tctcgtcgct
     4561 catggagcct cctgtcgttc ggggtggatt ggattcaacg aagacgttga gtaaggcacg
     4621 ggataatagt tcgcgttgtt gccaattaca agaaccgttt cgaaactggt gcttacaacc
     4681 ggcaacgatc ggccggctct gcccgccctc gccacttggg actgcgagtt gcatgtacac
     4741 gcgccgagga ggaagaggat ttgtacgatt gcatcgttgt cggcggggga ccggcgggtc
     4801 tttccgcgtc gctcttcctc gctcgctacc gtcgccgcac actaacgttt cacgataaca
     4861 gcccgcgtaa tgagtatgcc cacggcgttc acgggttcct cggccatcac ggaatccgcc
     4921 cggctgagct cctcgcacgc ggacgcgatg aagtcacaag tcatggtgga ctgatcgtag
     4981 acggttgtgt caccgaaatt gagcggcgct caaacaacca tttccgcgtc tgcgtcggcg
     5041 atatggatcc cgaccgccgc acattcgacg cgcggcgcat tttgctcgca acgggattgc
     5101 gcgacgtcac ccccgactgc ccgggctttc gcgaattcta tggttacagc gttcatcact
     5161 gccccgactg cgacggctac gaatgtctca acaagcgaat cgccgtgctc ggaaccggca
     5221 cgaagaccgt gggtttcgcg ctgagtctgc tgacctggac cagcaacata acctttatca
     5281 acgaggataa ggccggtctt acgaaggacg accgcgcgaa actcgccgct ttcgatatca
     5341 gcgtgcgcga tcagagcatt gagtcgctgg atggtgattt aaactcaaaa caactacaac
     5401 gaatactgtt caccgatggc gactcgttgg agtgcgatgc gcttttcttt aacctcggga
     5461 acaaaccggc aagcaatctg cacgagatgc tcggttgcaa gatcgacgag aattgcggct
     5521 tgatatgggt tgaccaaacg cgacaaacga gcgtcgaggg tgtttacgcc gccggcgaca
     5581 tcacaccgaa ttcccagcta gcgattgttg ccgcagccga aggagcaatg gcagccatcc
     5641 agatccacga ttcgttaatc ccctccgagc gcaagccaaa ataacctccc tcgaattgtc
     5701 gcggctccaa agttgcacgc tgagagttca cagtaatcat ttaaccaagg ggagacgata
     5761 atggcagaaa catcagcatc aagaaccgca cattcaggca tggttaccgg actgttccca
     5821 gacagagaga gcgccgaacg cgcgtacggc tccatgaccg agcgaggcta cacccaggac
     5881 gacgttaatc tgattatgtc ggacgaaaca cgaaagaaac atttcaccga cgacggtcgc
     5941 gagaccgagc tcggcagcaa ggcgcttgaa ggcgccggaa ctggtgcggc gatcggtggc
     6001 gcagtgggcg ccacattggc tgccatcgca gcaatcggaa cgacgttggc tttaccgggt
     6061 ctgggcctgc ttgttgctgg tccaatcgca gcgggattag cgggagccgg cgcgggcggc
     6121 gccactggcg gactgatcgg cgcgctcatc ggcgcaggca taccggaaga acgcgtcaag
     6181 cactacgaag aaggaatcaa aaggggcgga atcatgatgg gcgtcaagcc acgtaattct
     6241 gaagacgctg attacttcga ggaagactgg aagagaaatc gcggcgaaca ggtttatcga
     6301 taaacaagcg cctcgaagga aggaatacga tgaagcgaac tttagttgtt acatgcctgc
     6361 ttgcggtgct tggtctggcg ggttgcaatg gcgccacgtc caacagcaac accgcgaacg
     6421 gcaacgcgaa cctgaactcg aacactgcac cagctaatac aggcgtgctg cagaacaaca
     6481 acgggaatca gaacacttcg ggcgttagtc ccatgaactc gaacaatgcg aacagccgcc
     6541 cgaacagcaa cgcatcaccc ggcaaccaga atgactagct gacgcgaaat cattgtgggg
     6601 atcgacatag gtaggctgtc gccagctttc cctgtcacac caccgtgcat acgggtccgt
     6661 acacggcggt tcggcgagaa ggtttagtta acaaccaacg gcgtcaatcc gagcgatgcg
     6721 aagtaagcat tgggcagtgc aatggttaac gctggcgagt tactgagtcg ccacgggccg
     6781 tgagcactgc ccgccgtttg tgcggcaagg tctttaccca ctccacgttt ggttagctca
     6841 gcaaagcgca cccgcattgc tttccactgc ttccagatga ccgaccgtag tcgtcgtctg
     6901 gtccactcct caagcttgcg taacactgta ggtgtttggc agaagcgaaa gtagccgcgc
     6961 cagcccaaca aataacggct gagttgggtg accatcgttt ccactttaac gccccgagtt
     7021 cgccgcgtta gttcccgcac tcgttgcttg aaccgcgcaa tcgcttttgg cgcaatgcgc
     7081 cgcttcggtt cgcggtgcca agtgaaacta aagcccagga actttcgctt gcttggtttc
     7141 gacactgcgc tcttctggtc attgaccttg agtttcagct tcttcgtgat gaactctgaa
     7201 acactcttca tcactcgctc gccggctcgc tgactgcgca cgtagatgtt gcaatcgtcc
     7261 gcatatcgca caaaccgatg accgcgttgc tccaactccc ggtccagttc atcaagcaca
     7321 atattcgaca gcaagggtga caaagggcct ccttgcggcg ttccttcgtc caccggactc
     7381 accaatccag cttccagcac gccagcacga agaaaagcgc gaaccagttt cagcaagcgc
     7441 ttgtcactga ttcgctgtgc cagcttcgcc atcagtttgt cgtgattgac gcggtcgaag
     7501 aatttctcta agtccatgtc caccacccag ccgtagcctt cagcgatgta ttgctgcgct
     7561 ttgcttacgg cctgatgtgc cgagcgtccg ggtcggaacc cgtagctgtg tgcggagaag
     7621 gttgggtccc aactgcgttg cagtacttgc attactgctt gctgaataaa gcggtccagt
     7681 actgttggga tgcccaattg tcgcacccca ccatctggtt taggtatttc cactcgcttc
     7741 accggctgcg gtttgtaagt gccgcttagc agttgttctc gaatggttgg ccagtgtttc
     7801 ttcagatagt ctggtaattg ctcgaccgtc ataccatcga taccagcact acccttgttg
     7861 ctcttgactc gggccaaggc ctgctcgcaa ttgctgcgct cacagactgc ttccattagt
     7921 tgctcgttta ccttgctttc ggcttcacgc ttcaccacca gcgattcggt ccctcccgca
     7981 gagtccctcg gagcttcact cctactcatc tctgtgaagg ccaactctag ttggttcttc
     8041 tgccgcttgt cgctcatgag ttacgttgct tacttgcttt ctctttaacc ccaacacttg
     8101 ttgggtaccg ttcgggcctt cttccgactt gtcggaatac tatgccctct gctgacttct
     8161 gttacgcgct caactgcttc acagcaatct cagtcgtgaa ttcacgacac gctacagatc
     8221 tcccgaggta ggttcaaccg ccttcggtgc acaaccgccg aatttacaac cagcgccctt
     8281 gatggatatg ggctttgttg tcagttgcca actcgcccga cgccgtatgc ctcctatccg
     8341 gttcttgtcc atcggctcgc acctttgctc cacgcttcct tcagaccccg cctcacgacg
     8401 acgcccttgc gcttcgctaa ctcttcacct ccatcaggtt gagtaggaga ct
//
LOCUS       DASWTX010001405         3643 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_192470, whole genome shotgun sequence.
ACCESSION   DASWTX010001405 DASWTX010000000
VERSION     DASWTX010001405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3643
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192470"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..335)
                     /locus_tag="VGD38_21345"
     CDS             complement(<1..335)
                     /locus_tag="VGD38_21345"
                     /inference="COORDINATES: protein motif:HMM:NF022588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2911 domain-containing protein"
                     /protein_id="HEY0730645.1"
                     /translation="MISHKRSSTLLAAVCVLCFTGAAFAQIQTPRASQKASVMQRIGI
                     TDVTITYSRPGVKGRQIWGDPLPEQKAQGEATLDDQNERPKGAPIVPWGHMWRTGANE
                     ATQFVVTDDV"
     gene            429..>3643
                     /locus_tag="VGD38_21350"
     CDS             429..>3643
                     /locus_tag="VGD38_21350"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEY0730646.1"
                     /translation="MSRSRPLIPFLCLLVFSFALDARAQNGAGGQTRLLRTPTVSATQ
                     IGFAYANNIWVAPRAGGAARRLTSFQGQTGNPHFSPDGRWIAFSGEYAGNFDVYVVSS
                     EGGEPKRLTWHPGADTVQGWTPDGRTILFSSGRATWAPGGTPRFWTVPVEGGVEQPMA
                     LPRGYQGKISPDGTRIAYRMNNSWDEERRNYRGGQNRPIWIVDLKTYDLVSPPWTDSK
                     DVDPVWVEDSVFFISDRDGVANVWEYQTKSKKLTQVTKFTDFDVKSLGSGAGSIVFEQ
                     AGYVHELDPKNGKSRIVNISATGDFPWMMPNWEDVTNRLTSMALSPTGRRVVVEARGE
                     IFTIPAEKGDIRNLTNSSGSAERDPAWSPDGKFVSYFSDKSGEYKLVIEAQDGLTPPR
                     EITLKNPTRYYTPSWSPDSKKIMFTDTNLKVWVLDVATEQAKIVGEDQWMVPARTLNP
                     SWSPDSKWVAYVGRLRSLHHAIFISNVETGQSKQVTDGLADAVWPTWDASGKYLWFLA
                     STDFGLRSQWLDMTSYDRETNFGLYFVVLKKGDPSPLLPESDEDRGVGTGRRPAPGSC
                     ELPGAAGGGAGGGPAAGGAGEGAPAGEGAAPQRGPRGPVNVQIDFDGLQQRIVSVPGV
                     PERQYSDLQAGVEGTVFYLDAGRGGQGGGGPGGGGGNELIRYRLCDRRAATFVNNVAT
                     YEISADKRKLVYRAAGGGGGGFGGGGGFGQPPAPQLFLVDADRTPPQAGSGRLNVSLR
                     MYLEPKEEFKQIFNEGWRNQRDYLYVPNMHGTDWPRMRQMYGQLLPYVMHRADLNYLL
                     DMMGAEIAVGHSYVRGGDMPQVPQQVGGLLGADFAIENGRYKVTRIYDNESWNPDLRS
                     PLATPGATVNTGEYILAINGIELRAPDNIYRLLDGTANRQTTLTVNSTPTMEGARTVV
                     VIPVANEGGLRTRAWVEANRRLVEKLSDGQLAYVYLPNTGQGGYSSFNRYYFSQQDKK
                     GVVVDERFNGGGSAADYIVDILGRDFDGYMNNVAGDRYPFTVPSAGIWGPKVMIINEM
                     AGSGGDLMPYMFKRRKIGPLIGKRTWGGLVHTADTPPFIDGG"
BASE COUNT          702 a         1001 c         1187 g          753 t
ORIGIN      
        1 acgtcgtcag tcacgacgaa ctgcgtcgcc tcgttagctc cggtgcgcca catgtggccc
       61 cacggaacaa tgggcgcgcc tttcggccgt tcgttctgat cgtcgagcgt ggcctcgccc
      121 tgcgccttct gttcgggcag cgggtcgccc cagatctgcc ggcctttcac gccggggcgg
      181 ctgtaagtga tggtcacgtc agtaatgccg attcgctgca taacgctcgc cttttggctc
      241 gcacgcggcg tttgaatctg cgcgaaagca gcgcctgtaa agcacaaaac acagacagcg
      301 gctaatagag tggaactgcg cttatgggaa atcatggtct ttctcctcgt ggatgggttt
      361 tgcgaataat acaatgtggt attctttgcg ccaaatttcg gccacacctt tgttcggagg
      421 acaatctaat gtctcggtct cgcccgctta ttccgtttct ctgtcttctt gtgttcagtt
      481 tcgctttaga tgcacgcgcg caaaacggcg ccggcggtca aacgcgtctg ctgcgaacgc
      541 cgaccgtcag tgcaacgcag atcggtttcg cttacgcaaa caacatctgg gtcgcgccgc
      601 gcgcgggtgg cgccgcacgc aggctgacga gttttcaggg acaaaccggg aacccacatt
      661 tctcgcccga cgggcgctgg atcgcgttca gcggcgagta tgccgggaac ttcgatgtct
      721 acgtcgtgtc gtctgaaggc ggcgagccga aacggttgac gtggcatccg ggcgcggaca
      781 cggttcaagg ctggacgccg gacggccgca cgattctatt ttcttcgggc cgtgcgacgt
      841 gggcgccggg cggcacgccc aggttctgga ctgttccggt cgaaggcggt gtcgaacaac
      901 cgatggctct gccgcgtggc tatcaaggga agatttctcc agacggcaca cgcatcgctt
      961 atcgcatgaa caattcgtgg gatgaagaac ggcgcaatta ccgcggcgga cagaaccggc
     1021 cgatctggat cgtcgatctg aaaacttacg atctcgtttc accgccgtgg acggactcga
     1081 aagacgtcga tccggtgtgg gttgaagatt ccgtgttctt catttccgat cgcgacggcg
     1141 tggccaacgt ttgggaatac cagacgaaga gcaaaaagct cacgcaggtt acgaagttta
     1201 ctgacttcga cgtgaagtcg ctcggctccg gcgcgggttc gatcgtgttc gagcaggcgg
     1261 gctacgttca cgagctcgat ccgaagaacg gcaagtcgcg catcgttaac atctccgcga
     1321 ccggcgactt tccgtggatg atgccgaact gggaagacgt cacgaaccgg ctgaccagca
     1381 tggcgttgtc gccgacggga agacgcgtcg tggtggaagc gcgcggcgag atcttcacga
     1441 ttccggccga gaagggcgac atccgcaacc tgacgaactc gagtggttcc gccgagcgcg
     1501 atccggcgtg gtcgcctgac ggcaagtttg tttcttactt cagtgacaaa tccggcgagt
     1561 acaagctcgt gatcgaagcg caggacggat tgacgccgcc gcgcgagatc acgttgaaga
     1621 acccgacgcg ctactacaca ccttcatggt cgcccgattc gaagaagatc atgttcaccg
     1681 acacgaacct gaaagtttgg gtgctcgacg ttgcgactga acaagcgaag atcgtgggtg
     1741 aagatcagtg gatggtgccg gcgcgcacgt tgaatccgtc gtggagcccg gattcgaagt
     1801 gggtcgcgta cgtgggccgt ttgcgttcgc tgcaccacgc gatctttatc agcaacgttg
     1861 agacgggaca aagcaagcaa gtgaccgacg ggcttgcgga cgcggtgtgg ccgacgtggg
     1921 atgcgagtgg caagtatttg tggttcctcg cgtcgacgga ttttggtttg cggtcgcagt
     1981 ggctcgacat gacttcgtac gatcgcgaga cgaacttcgg gctgtacttc gtggtgttga
     2041 agaagggcga tccgagtccg ttgctgccgg agagtgatga ggatcgtggt gttgggactg
     2101 gacggcgtcc ggcgcctggg tcttgtgaac ttccgggcgc ggcaggtggc ggcgctggtg
     2161 gtggcccggc ggcgggtggc gcaggtgaag gtgcgcctgc tggcgaaggc gcggcgccgc
     2221 aacgtggacc acgtggtcca gtcaacgtgc agatcgattt cgacgggcta cagcaacgca
     2281 tcgtttcggt tccgggtgtg ccggagcgtc aatactcgga tttgcaagcc ggtgttgagg
     2341 gcacggtgtt ttatctcgat gccggacgcg gtggacaggg tggtggtgga ccgggcggcg
     2401 gcggtggcaa cgaactgatc cgttatcgcc tctgcgatcg acgtgcggcg acgttcgtta
     2461 acaacgttgc gacttacgag atcagcgctg acaaacgcaa gctcgtctat cgcgctgcgg
     2521 gtggcggtgg tggtggtttt ggtggcggcg gtggttttgg tcaaccgccc gcgccgcagt
     2581 tgttcctcgt cgacgcggat cggacgccgc cgcaagcggg gtcgggacgt ttgaacgttt
     2641 cgttgcgcat gtatctcgag ccgaaggaag agttcaaaca gatcttcaac gaaggctggc
     2701 gcaatcaacg cgactatctc tacgtgccga atatgcacgg aacggattgg cccaggatgc
     2761 ggcagatgta cgggcagttg ttgccgtacg tgatgcaccg cgcggacctg aattacctgt
     2821 tggacatgat gggcgcggag atcgcggttg gacactcgta cgtccgcggt ggtgacatgc
     2881 cgcaggtgcc gcaacaagtc ggcggcctgc tcggcgctga tttcgcgatc gagaacgggc
     2941 gttacaaagt cacgcgcatt tacgacaacg agagctggaa tccggatctg cgttctccgc
     3001 tcgcaacgcc gggcgcgacg gtcaacacgg gcgagtacat tctcgcgatc aatggcatcg
     3061 agctgcgcgc gcccgacaac atctaccgct tgctcgacgg caccgcgaat cgccagacaa
     3121 ccttgaccgt gaactccacg ccgacgatgg aaggcgcgcg aaccgtggtc gtgattccgg
     3181 tggctaacga aggcggtttg cgcacgcgcg cgtgggtcga ggcgaaccgt cgtctcgttg
     3241 aaaaactttc cgacggccaa ctcgcttatg tttatctgcc gaacacgggc cagggtgggt
     3301 actcgagttt caaccgctac tacttctcgc aacaggacaa gaaaggcgtc gttgttgacg
     3361 agcggttcaa cggaggtggc tcggctgctg attacatcgt cgacattttg gggcgtgatt
     3421 tcgacggata catgaacaac gtggccggag atcgttatcc gttcaccgtt ccgtcggctg
     3481 gaatctgggg accgaaagta atgatcatta acgaaatggc cggctccggc ggcgatctga
     3541 tgccctacat gttcaagcgt cgtaagattg gaccactgat cggcaaacgc acctggggcg
     3601 gcctggtcca cacggccgac acgccgccat tcatcgacgg cgg
//
LOCUS       DASWTX010001406         4911 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_64987, whole genome shotgun sequence.
ACCESSION   DASWTX010001406 DASWTX010000000
VERSION     DASWTX010001406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4911
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64987"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            390..1766
                     /gene="ltrA"
                     /locus_tag="VGD38_21355"
     CDS             390..1766
                     /gene="ltrA"
                     /locus_tag="VGD38_21355"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: protein motif:HMM:TIGR04416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003964 - RNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0000373 - Group II intron splicing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HEY0730647.1"
                     /translation="MSDKRQKNQLELAFTEMSRSEAPRDSVEGTEPLMAKRTAESPAH
                     SEQLMEEICGRKNCQQALARVKSNKGSAGIDGMTVEQLPVYLKQHWPTVREQLLSGTY
                     KPQAVKRVEIPKPDGGIRQLGIPTVLDRFIQQAVLQVVQRGWDRTFSDHSYGFRPGRS
                     AHQAVAKAQQHIAAGYGWVVDLDLEKFFDRVNHDKLMAKLARRISDKRMLKLIRAFLR
                     AGVMEGGLVSPVDEGTPQGGPLSPLLSNIVLAELDHELERRGHRFVRYADDCNIYVRS
                     QRAGERVMKSVSQFITKKLKLKVNEQKSAVARPSKRKFLSFSFTWQREPKRRLAPKAI
                     ARFKQRVRELTRRTRGVKVETMVAQLSRYLMGWRGYFGFCQTPTVLRSLEEWLRRRLR
                     SAVWKQWKYARVRFAELSKRGVGKDLAAQTAGSAHGPWRLSNSPALTIALPNAYFASL
                     GLTPLVVN"
     gene            1964..2980
                     /locus_tag="VGD38_21360"
     CDS             1964..2980
                     /locus_tag="VGD38_21360"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY0730648.1"
                     /translation="MKKTTFLKLKVREASFISRALLSSRHPVLAHLIPMRRCNLACGY
                     CNEYDHTSKPIDLEIIKSRLDKLADLGTSIVTISGGEPMMHPELDQIIHHIRHRGMIA
                     GLISNGYYFTPERIRRLNKAGLEYLQISIDNVEPDEVSRKSLRVLDKKLRYLSEHADF
                     HVNINSVIGGGIKNPEDALTVARRAVELGFSTTVGVIHDSDGTLKPLSKKETDIFQQV
                     KKMGNKDHARLNWFQDSIAEGKPYNWRCRAGARYLYICEEGLVHWCSQQRGYPGIPLE
                     QYTMDDFDREYKTEKWCAPTCTLQCVHQVGILDNWRDPQKTPAQIAQEQKNGKNVGEM
                     IGAD"
     gene            2985..3905
                     /locus_tag="VGD38_21365"
     CDS             2985..3905
                     /locus_tag="VGD38_21365"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0730649.1"
                     /translation="MNFLRRYPLLAFAVLICSIPLQPGLAQNDRLVLNVTVVYEGKQP
                     LPTLEAGDFTVLVDKQPQKIVSFNHGNAPVSVGILVDVSGSTARFSDKALDHFADGID
                     TLFQLSNPQNDYFVVAFQVKPGMLQNWTNDPQAIRSKLLPIKPDSGSALYDAVYQSIQ
                     HVKTGRHQKRVLILLSDGFDNNSEKTFNEVRDALKDSDVLLYSIALINEEGSGSALAQ
                     EGKGILDELSEVSGGQALLLQNGSKAKAINKAFELLATEVRSQYELVIEPAPMTGARK
                     WRKVKVTAAYTDVHGKRKELKVRTREGFYR"
     gene            complement(3877..4569)
                     /locus_tag="VGD38_21370"
     CDS             complement(3877..4569)
                     /locus_tag="VGD38_21370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730650.1"
                     /translation="MIPRFNMSAGELFELIRPSMLIVAALLSTWVLYSARKRFPLYAA
                     FAWALGTLFLPLVVLPIYLIVILLWRRAVHSPRRSLILPLAYGVIVTASIAVYFYFDS
                     RTVDAHLARAARAKLIDDHGTVIREYRSALALEDNPHTHKLLALQLMQAGYFTEAVSE
                     FRLAQQGGEPDDVIHYNLGLLFERLSQNGQARLEFEEFLLTQTCHTPDDLCDSARQKL
                     KTLASDKSPRGF"
     gene            complement(4566..>4911)
                     /locus_tag="VGD38_21375"
     CDS             complement(4566..>4911)
                     /locus_tag="VGD38_21375"
                     /inference="COORDINATES: protein motif:HMM:NF014886.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pyruvate kinase alpha/beta domain-containing
                     protein"
                     /protein_id="HEY0730651.1"
                     /translation="SEEMGTKVTAVFTDSGLMARRLSSLRHNQRIIALTQRPEVLCEL
                     SLIWAVEPLLIGKAQSTEEMLKVGEQALLDAGVVDKGETIVIMAGRLSGLGLSSSVSI
                     FTVGGNLGPTRQ"
BASE COUNT         1211 a         1301 c         1431 g          968 t
ORIGIN      
        1 agtctcctac tcaacctgat ggaggtgaag agttagcgaa gcgcaagggc gtcgtcgtga
       61 ggcggggtct gaaggaagcg tggagcaaag gtgcgagccg atggacaaga accggatagg
      121 aggcatacgg cgtcgggcga ggtggcaacc aacaacgaag cccatatcca tcaaggacgc
      181 tggttgtaaa tccggcggcg gtgcgctgaa ggcggtcgag cttacctcgg gagatctgtt
      241 gcgtgtcgtg gattcacgac tgagactacc gtgaggtagt tgaacgcgca gcagaagtca
      301 gcagagggca tagtaatcac gcgagtggtg aaggcccgaa cggtcctccg caaggaggtt
      361 aaagagagag caagtaagca gcgccactca tgagcgacaa gcggcagaag aaccagctag
      421 agctggcctt cacagagatg agtaggagtg aggctccgag ggactctgtg gaagggaccg
      481 aaccgttgat ggcgaagcgc acagctgaaa gcccggctca tagtgaacaa ctgatggaag
      541 aaatctgcgg acgcaagaat tgtcagcagg cattggcacg agtcaagagc aacaaaggta
      601 gtgctggtat cgatgggatg actgtcgagc agttgccagt ttacctgaag caacactggc
      661 caaccgttcg tgagcaactg ttgagcggaa cttacaaacc gcaagcggtg aagcgggtag
      721 aaataccgaa gccagacggt gggatacgac aattgggtat cccgacggtg ctggaccgct
      781 tcatccaaca agcggtgctg caagtggtgc aacgcggttg ggaccgaacc ttctccgatc
      841 atagctacgg atttcgtccc ggacgctcgg cgcatcaggc agtagccaaa gcacagcagc
      901 acatcgctgc tggctacggc tgggtggtgg acctggactt agagaagttc ttcgaccgag
      961 tcaatcacga caaactgatg gcgaagctgg cacgacgaat cagtgacaag cggatgctga
     1021 aactgattcg agcttttctg cgtgccggag tgatggaagg tgggttggtg agtccggtag
     1081 atgaaggaac gccgcaaggt ggacctttgt cccccttgtt gtcgaacatt gtgcttgccg
     1141 agttggacca tgagttggag cgacgcggcc atcgcttcgt gcggtatgcg gacgattgca
     1201 acatctacgt gcgcagccag cgagccggtg aacgagtgat gaaaagtgtt tcgcagttca
     1261 tcacgaagaa gctgaaactc aaggtcaacg aacagaagag cgcagtagct cgaccaagta
     1321 agcgaaagtt cctgagcttt agtttcactt ggcagcgcga accgaagcgg cgccttgcgc
     1381 caaaggcaat tgcgcggttc aagcaacggg tacgggaact gacgcggcgg acgcgtgggg
     1441 tcaaggtgga aacgatggtc gcacaactca gtcgttacct gatgggatgg cgcggctact
     1501 tcggtttctg ccaaacaccc acagtgttgc gcagtcttga ggagtggctc agacggcgac
     1561 taaggtcggc cgtttggaag cagtggaagt atgcgcgggt gcggtttgct gaactatcga
     1621 aacggggagt gggtaaagac ctagccgcgc aaacggcggg cagtgctcac ggcccgtggc
     1681 gactcagtaa ctcgcctgct ctaaccattg cactgcccaa tgcctacttc gcgtcgcttg
     1741 gattgacgcc gctagttgtt aactagcagc ttaactcgcc gaaccgccgt gtacggaccc
     1801 gtatgcacgg tggtgtgaca gggaaagcca gcaatggcct acctatgtcg atttgagttc
     1861 agcctttagg ctgctttggc aaagacaagc taaagcttga actcaaagca ggaccactct
     1921 gcttgcgttc tttggtttgg tctcttattc tcggcgtcga ataatgaaga agacaacgtt
     1981 tctaaagctg aaggtgcgtg aggcaagctt tatcagccga gcgttgttgt ccagccgtca
     2041 tcccgttctg gcccacttga taccgatgcg ccgctgtaat ctggcgtgcg gttattgcaa
     2101 cgaatacgat cacacttcaa aaccgatcga tctcgagatc atcaagagcc gtctcgacaa
     2161 gctcgcagat ctcggaacgt cgatcgtgac gatctccggc ggcgaaccga tgatgcatcc
     2221 ggagctcgat cagatcatcc accacatccg tcatcgcgga atgatcgcgg ggttgatctc
     2281 caacggctat tacttcacgc cggaacgtat caggcgtctc aacaaagccg ggctcgagta
     2341 tctacagatc agtatcgaca acgtcgagcc tgacgaagtc tcgcgcaaga gtttgcgcgt
     2401 gctcgataag aagctgcgtt acctttcaga acacgctgac tttcacgtca acatcaattc
     2461 cgtgattggc ggcgggatca agaaccctga ggacgctttg actgtcgcgc gccgcgcggt
     2521 ggagcttggt ttctcaacca cggtcggcgt gattcacgac agcgacggca cgctgaagcc
     2581 gctctcgaaa aaagagacgg acatctttca gcaggtaaag aaaatgggca acaaggacca
     2641 cgcccgtttg aactggttcc aggacagtat cgccgaaggc aagccttaca actggcgttg
     2701 tcgcgccggc gcgcgttatc tctacatttg cgaagaaggt ctggtccact ggtgctcgca
     2761 gcagcgcggc tatcccggca ttccgctcga gcagtacacg atggacgact tcgatcgaga
     2821 atacaaaacc gagaagtggt gcgcgccgac gtgtacgttg cagtgcgttc accaggtcgg
     2881 cattctcgac aactggcgtg acccacaaaa gacgcccgcg cagatcgcgc aggagcagaa
     2941 gaacggcaag aacgtcggcg agatgatcgg cgccgattaa ctacatgaat ttcttgcgca
     3001 ggtatccgct tcttgcgttc gcagttctca tctgttcaat cccccttcaa cccggcctcg
     3061 cgcaaaacga ccggctcgtt ttgaatgtga cggtcgtgta cgaaggcaaa caacctctgc
     3121 ccacacttga agccggcgac ttcacagtcc tcgtcgacaa gcaaccgcaa aagatcgtct
     3181 cgttcaatca cggcaacgcg ccggtgagtg tgggaattct ggtggacgtt tccggtagca
     3241 ctgcccggtt ctccgacaag gcgctcgacc actttgccga tggcatcgac acgctgtttc
     3301 aactcagcaa tccgcaaaac gactacttcg tagtggcttt tcaagtaaag cccggaatgc
     3361 ttcagaactg gaccaacgac ccgcaggcga tccgcagcaa actgcttccg atcaagcccg
     3421 acagcggttc cgctttatac gacgccgttt accaaagtat tcagcacgtc aaaaccggcc
     3481 gccatcagaa gcgagtgctg atccttctta gcgacggctt cgataacaac tccgagaaga
     3541 cgttcaacga ggttcgcgat gccctcaaag attcggacgt tctgctctac agcatcgcgc
     3601 tcatcaacga ggaaggctcc ggcagcgctc tcgctcagga aggcaaaggc atccttgatg
     3661 aactgagcga agtttccggc ggccaggcgt tgctgctgca aaatggctcg aaggcgaaag
     3721 cgataaacaa ggcttttgaa ctgttggcca ctgaagtgag aagccagtat gaattggtga
     3781 ttgagccggc gccgatgacg ggagctcgga aatggcgtaa ggtaaaagtg accgccgcct
     3841 acaccgacgt gcacggaaag cgcaaagagc taaaggtcag aacccgcgag ggcttttatc
     3901 gctagcaagt gttttgagct tttgacgtgc gctgtcacac aggtcgtcag gagtatggca
     3961 ggtttgcgtt agtagaaact cttcaaattc caaccgggct tgtccgttct gactgagcct
     4021 ttcaaacagt aatcccaggt tgtaatgaat aacgtcgtcc ggttcgccgc cctgctgggc
     4081 caacctaaac tcagaaacag cttcagtgaa ataaccagcc tgcatcaact gaagcgcgag
     4141 tagtttgtgc gtgtgcggat tgtcttcgag tgcgagcgcg ctgcggtatt cgcgaatcac
     4201 agttccgtga tcgtcgatga gtttcgctcg cgcagcgcgt gccagatgcg cgtcgaccgt
     4261 gcggctgtcg aagtagaagt acacggcgat tgaggcggta acgatcactc cgtacgcgag
     4321 cggcaagatc agcgaacgcc gaggcgaatg caccgcgcgt cgccagagca gaataacgat
     4381 cagataaatc ggcaggacaa cgagcggaag aaacaacgtt ccgagcgccc aggcgaaggc
     4441 tgcataaagc gggaatcgtt tgcgagcgga atagaggacc caggttgaaa gcaacgcggc
     4501 gacgatcaac attgacggcc tgatgagctc gaacaactca ccggccgaca tgttaaatcg
     4561 cggaatcact gtcttgttgg accaagattg ccgccgacgg taaagatcga caccgagctc
     4621 gaaagaccga gtcccgaaag acgtccggcc atgatcacga tcgtctcgcc tttatcaacc
     4681 acacccgcat cgagcaaagc ctgttcaccg accttcaaca tctcctcggt cgattgcgcc
     4741 ttcccgatca gcaaaggttc gacggcccag atcagcgaca actcgcaaag aacttccggc
     4801 cgctgcgtca gtgcaatgat gcgttgattg tgacggagtg acgaaagcct gcgggccatc
     4861 aagcccgaat cagtaaagac tgcggtgact ttcgttccca tctcttcaga c
//
LOCUS       DASWTX010001407         6782 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_86327, whole genome shotgun sequence.
ACCESSION   DASWTX010001407 DASWTX010000000
VERSION     DASWTX010001407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6782)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6782
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86327"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..923)
                     /locus_tag="VGD38_21380"
     CDS             complement(<1..923)
                     /locus_tag="VGD38_21380"
                     /inference="COORDINATES: protein motif:HMM:NF014877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730652.1"
                     /translation="MKPLKIGITGVRGIVGETFTPELAVEFAQAFGTYLDGGRILVCR
                     DTRPSGPMIRSAVLAGLLAAGCEIVDLGICPTPSMQLAVKWLEADGGIAITAGHNPWR
                     WNALKFVRGDGLYLNSRQAEELLDIFHQGEFLKADWKGIKQSVEFADPLGKHIETLER
                     SFAVDVIRKRRLVVAVDCCNGACSLLSPRWLEVLGCEVLALNNDPTAPFPHAPEPKPT
                     TMAQLCALVKAGKAGVGFAHDADGERLGIVTDLGEPLSEEMTLALAAEICLRKQSGTI
                     VTNVSTTQAIEFIAAQHGGNVVRTPVGQAYIS"
     gene            990..1916
                     /locus_tag="VGD38_21385"
     CDS             990..1916
                     /locus_tag="VGD38_21385"
                     /inference="COORDINATES: protein motif:HMM:NF016668.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEY0730653.1"
                     /translation="MLRKISTLFFLLLAVSAANAQERSLAERLGYPADAKLLIVHADD
                     LGMSHSVNAATLKAFQTGLVNSGSIMVPCPWLSEIAAYARANPQADLGLHLTLTSEWT
                     HFRWGPVAPKDRVASLLDKDGYFRLSESEAAKLADPKEVEMEIRAQIEKAKAMGIVPT
                     HLDSHMGTLYQNKALFDVFLRVAREYKLPVRVAKEWAGRAEYLTSSLIANDVFIDRVL
                     DVNPSVAPQDWARFYSDAIRNLKPGVTEVVIHLAYDDGEMRGATFDHPDWGAAWRQRD
                     FDFFTSDAFRKLLEENKIKLITWRELGKLIAK"
     gene            1979..2419
                     /locus_tag="VGD38_21390"
     CDS             1979..2419
                     /locus_tag="VGD38_21390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730654.1"
                     /translation="MKAIERVIAFATLILIVTVSSSVFAQTDRQTVVNIPFHFTVSDK
                     AMPAGEYLIRRNRKDTDTVWVIQHRQTGKAVMMLTQAVRATDTQEDAKFVFRKYDDLY
                     ILSQFWAAGTNTGREIQVTDRERELSKALAKAPQVHVLIDRGGR"
     gene            2576..3730
                     /locus_tag="VGD38_21395"
     CDS             2576..3730
                     /locus_tag="VGD38_21395"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF021778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052689 - carboxylic ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactonase family protein"
                     /protein_id="HEY0730655.1"
                     /translation="MTTNNFSRRQFLKLGGIGVVGAVSFPTFARAPQELVLYVGTYTS
                     GKSEGIYTYGMDPTTGALTQRASVKSNNPSFVVVSAGRFLYAVNEVGELDGKRTGGVS
                     AFAIDAASKQLTFINQQPSEGADPCHLSFDRQRKNLLVANYTGGTVAVLPIQRDGSLG
                     AASDVEQHEGSGPREQQKSAHAHCIKLDRANRFAVAADLGSDKVMIYRFNSLSGKLEP
                     GAQASATLHPGAGPRHLTFHPNGKYLYVINELDSSLTTFRYDAARGTLTAFETVSTLP
                     RDFTGTSYCADIHVSKSGRFLYGSNRGHNSIVVFAIDPRTARLSLVQHVATEGNWPRN
                     FTIDPSGRFLLVANQRSDNVVVFRIDAQTGRLTPAGINAEIPVPVCLQFH"
     gene            3773..6121
                     /locus_tag="VGD38_21400"
     CDS             3773..6121
                     /locus_tag="VGD38_21400"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HEY0730656.1"
                     /translation="MRKVTRALGAVSLSLCFVLQPAFAQTSPGVIDSDEFFLRNGQIR
                     PLPDHSQKIEALLKRMTIEEKVGQMTQLAIGMIASGADQNIKVDPAKLEKAIVKYGVG
                     SILNVSDQALTLDHWHQIIGQIQEAATKRTRLGIPVIYGIDSIHGANYVQGATLFPQE
                     IGMAATWNPELMKRAAEITAAETRAAGIPWSFSPVLDLGRNPLWPRFWETFGEDPYLA
                     SVMGVAFTRGLEGTDVASQTAVASSLKHYMGYSFPLTGRDRTPAWIPENYLREYFLPP
                     FAAAIKANARTIMINSGEINGVPGHINRHLLHGILREELGFNGFVVSDWEDIKKLVNI
                     WRIAATEKEATRLAVMAGIDMSMVPNDYSFADHLLELVKEGAVPQSRIDEAVRRILRV
                     KYELGLFENPGPNASLKSNFAKPEWRQVALDAARESITLLKNANNLLPLAKNRKVLVT
                     GPTADSLISLNNGWTYVWQGSEESLYPKDRDTIRRAIEAKVGAGNVTYVPGTRIFRQP
                     GSTSNNNPTSLEEEVDIPAAVRAAQSADVVVLALGEGSYCETPGNITDLTLGEPQLKL
                     ADAIIATGKPVVLVLVEGRPRVINRIADRIPAIVMAYNPSNEGGTAIADVLFGDVNPS
                     GKLPFTYPRTPNGLINYDHKPFETENTAFGNMAFKPQFAFGEGLSYTTYSYKDLKLDK
                     QTISGNEELTATVIVTNTGQRAGKEAVLVYVSDLVASLSPPNRRLRRFAKVNLEPNQS
                     RTLTFKLRRDDLSFIGADNKPIAEPGEFEVRIGDLSQRFRLR"
     gene            6118..>6782
                     /locus_tag="VGD38_21405"
     CDS             6118..>6782
                     /locus_tag="VGD38_21405"
                     /inference="COORDINATES: protein motif:HMM:NF014852.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 20 glycosylhydrolase"
                     /protein_id="HEY0730657.1"
                     /translation="MKTNRYLLVTLVLLTCGPLAVAQQHNLMPAPASVTFDNERLAVD
                     ESFKVATRGHSDARLQAAIARFVKRLEGRTVLTLAPGLALDDQMTTLIVHCEGPGKDI
                     PAVDENESYRIDITRRQALLSAPTVIGAIRGLETVLQLLDADRQGYFLPGVKIHDQPR
                     FPWRGLLIDVARHFEPVEVLKRNLDAMAALKMNVFHWHLTEDQGFRVESKKYPKLHQL
                     GSDG"
BASE COUNT         1514 a         2009 c         1893 g         1366 t
ORIGIN      
        1 gagatgtacg cctgtccaac cggagtgcga accacgttgc cgccgtgctg cgcggctatg
       61 aattcaatcg cctgcgtcgt ggaaacattc gtcacgatcg tgccgctctg ctttcgcagg
      121 caaatctccg ccgccagcgc gagggtcatc tcttccgaaa gcggctcacc gagatcggta
      181 acgattccaa gacgttcacc atccgcatcg tgcgcgaaac cgaccccggc tttgcccgcc
      241 ttcacgagcg cgcagagttg ggccatcgtt gttggtttag gttcgggcgc gtgcggaaat
      301 ggcgcagtcg gatcgttatt caacgcgagc acttcgcaac cgagcacttc caaccagcgc
      361 gggctcaaca acgaacatgc accgttacag caatcgaccg cgactaccag ccggcgtttg
      421 cgaatcacat cgaccgcaaa cgaacgttcg agcgtttcaa tgtgtttgcc aagcggatcg
      481 gcaaactcga ctgactgctt gatccctttc cagtctgctt tcagaaactc gccctggtga
      541 aaaatgtcga gcagttcctc ggcttgcctc gagttgagat aaagaccgtc gccacgaaca
      601 aacttgagcg cgttccatcg ccacggattg tgtcccgcgg taatggctat gccgccgtct
      661 gcttcaagcc atttcacggc cagttgcatg ctcggcgtcg ggcagatccc gagatcgacg
      721 atttcacaac ccgccgccag cagacccgcc agcaccgccg agcggatcat cggccccgac
      781 ggccgcgtgt cgcggcaaac cagaatgcgc ccaccgtcca ggtaagtgcc gaacgcctgc
      841 gcaaactcca ccgctagttc gggcgtgaaa gtctcgccca caattccccg gactccggtg
      901 atgccgattt ttaagggctt catcgattaa ggaaacagac ttaattgtaa gtcacgacat
      961 aagtctaaca cagtgtaaaa tcagccatta tgctgagaaa aatctccacc ctgtttttcc
     1021 tactcctggc ggtctcagcg gctaatgcgc aggaacgcag tctcgccgaa cggctcggct
     1081 acccggcgga cgccaagctc ctgatcgtcc acgccgacga cctcggcatg tcgcattcgg
     1141 tcaacgccgc cacgctgaaa gccttccaaa ccgggctcgt taactccggc agcattatgg
     1201 ttccgtgtcc gtggctttcc gaaatcgccg cctacgcgcg cgccaacccg caggcggatc
     1261 tcggtctgca cctgacactt acgagcgagt ggacgcactt tcgctggggc ccggtcgcgc
     1321 cgaaagatcg cgtcgcgtcc ttattagata aggacggcta cttccgcctg tcggaaagcg
     1381 aggccgcgaa gcttgccgat ccgaaggaag tcgagatgga gatccgcgcg cagatcgaga
     1441 aggccaaggc gatgggcatc gtgccgacgc atctcgattc acacatgggc accctctacc
     1501 agaacaaagc gttgtttgac gtgttcctgc gcgtcgcgcg cgagtacaaa ctgccggtgc
     1561 gagtcgcaaa ggaatgggcc ggccgcgcgg agtatctgac gtcttcgctg atagcgaacg
     1621 acgtttttat cgatcgcgtt ctcgacgtga accccagtgt cgcgccgcag gattgggcca
     1681 ggttctacag cgacgcgatc cgcaacctga aacccggcgt cacggaagtg gtgatccatc
     1741 tggcctacga cgacggcgag atgcgtggcg caacctttga tcatcccgac tggggcgcgg
     1801 cctggcgcca gcgcgacttc gattttttta ccagtgacgc ctttcgtaag ttgctcgaag
     1861 agaacaagat caaactgatc acctggcgcg agctcgggaa gttgatcgcg aaataatctc
     1921 tctcgtggtc tccttttgca ttttcttgcg cgttagtaga tgtgaaagga gtgagctaat
     1981 gaaagccatc gagagagtaa tcgcattcgc aactttaatt ctgattgtaa cggtctcatc
     2041 atccgtcttt gcacagaccg atcgccagac ggtagttaat atcccttttc atttcaccgt
     2101 cagcgacaaa gccatgccgg ccggcgagta cctgattcga cgcaaccgga aagatacgga
     2161 cacggtttgg gttattcaac atagacagac tggcaaggcc gtgatgatgt tgacgcaagc
     2221 cgtgcgcgcg actgacaccc aggaagacgc gaagttcgtg tttcgtaagt acgacgatct
     2281 ctacatcctg tcgcaattct gggcagccgg aacgaacacc ggacgtgaga ttcaggtcac
     2341 cgatcgcgaa cgtgagctgt cgaaagcact ggccaaagcg ccgcaggtac atgtcctgat
     2401 cgatcgaggt gggcggtaag aaatcctgca agctgtagtt tgagctagac ccgaagtaac
     2461 cccgaaacat acgaatcacc cctccgagcc ctggcagaaa tgccggggct cttgctttgt
     2521 catcgagtac aatacggagc tgctggccca tcagaacaac ttcaggagct tccgagtgac
     2581 aacaaacaat ttctcgcgcc gccagttttt gaaacttggc ggcatcggcg tggtaggcgc
     2641 agttagcttt ccaacgttcg cgcgcgcacc acaggaactg gtgctgtacg tcggcactta
     2701 cacttcaggc aaaagcgaag gcatttacac gtatggcatg gacccgacga ccggagcgtt
     2761 gactcagcgc gcttcagtga agtcaaacaa tccgtcgttc gtggtggtta gcgcgggccg
     2821 gtttctgtat gccgtcaacg aagtgggtga gctcgacgga aaacgaaccg gcggcgtgag
     2881 tgcttttgcg atcgacgcgg ccagcaagca gttaacgttc atcaatcaac aaccttccga
     2941 aggcgccgat ccgtgtcacc tgtcgttcga tcgccaacga aagaacctgc tcgtcgccaa
     3001 ctacaccggc gggactgtcg cagtgttgcc gattcaacgt gacggcagtc ttggcgcggc
     3061 aagcgacgtc gagcaacacg aaggctctgg accacgcgag caacaaaagt cagcacacgc
     3121 gcattgcatc aagctcgacc gggcgaatcg cttcgccgtc gccgcggatc tcggcagcga
     3181 caaggtgatg atctaccggt tcaattcgct gagtggaaaa ctcgaacccg gagcgcaagc
     3241 ttcagcaaca cttcatcccg gcgctggacc acgtcacctg acgtttcatc caaacggcaa
     3301 atacctctac gtgatcaacg agctcgattc gtcgttgacc acgttcagat acgacgctgc
     3361 aagaggaacg ctcacggcgt ttgaaaccgt ctccacgctg ccgcgagatt ttaccggcac
     3421 gagttactgc gccgacattc acgtctccaa gtccggccgg tttctttacg gctcgaaccg
     3481 cgggcacaac agcatcgtag tgtttgccat cgacccgcgc accgcgcgct tgagtctcgt
     3541 tcagcacgtt gcaaccgaag gcaactggcc gcgaaacttc acgatcgatc catcgggacg
     3601 cttcctgctg gtcgcaaatc agcgctcgga caacgtggtc gtgtttcgca tcgacgcaca
     3661 aaccggacgt ttaacgccgg cggggatcaa tgcggaaatt ccagttcccg tctgcctcca
     3721 atttcactaa aataggcgcg ttcctgtatt cctgcctgag gacagcaaat agatgagaaa
     3781 agtgactcgt gccctggggg cagtcagtct ttcactgtgc ttcgtactcc agccggcatt
     3841 cgcccagacg tcgccgggtg tgatcgacag cgacgagttt ttccttcgca acggtcagat
     3901 ccgcccgctc cccgatcatt cgcaaaagat cgaagcgttg ctcaaacgca tgacgatcga
     3961 agagaaggtc ggacaaatga cccagctcgc catcggcatg attgcctccg gcgccgacca
     4021 gaacatcaag gtcgatccgg ccaaactcga aaaggcgatc gtgaagtacg gcgtcggttc
     4081 gattctcaac gtttccgatc aggcgctgac gctcgatcat tggcaccaga tcatcggcca
     4141 gatacaggaa gctgcgacta aaaggacgcg cctcggtatt ccggtcatct acggcatcga
     4201 ctcgattcac ggcgcgaact acgtgcaggg cgcgacgctc tttccgcaag agatcggcat
     4261 ggccgcgacg tggaatccgg aactgatgaa acgcgccgcg gaaatcaccg ccgcggaaac
     4321 gcgggctgcc ggaattccgt ggagcttctc gcccgtgctc gacctcggcc gcaatccgct
     4381 gtggccgcgc ttctgggaaa cgttcggtga agatccgtat ctcgcaagtg tgatgggtgt
     4441 tgctttcacg cgcgggctcg aaggaacgga cgtcgcttca caaacagcgg tcgcgtcgag
     4501 tttgaagcat tacatgggct acagttttcc gctcaccgga cgcgatcgca cgcccgcgtg
     4561 gattcctgaa aattatttgc gcgagtattt cctgccgccg tttgccgcgg cgatcaaagc
     4621 caacgcgcgc acgatcatga tcaactccgg cgagatcaac ggcgtgcccg gtcacatcaa
     4681 ccgccacctg cttcacggca tcctgcgtga agagctcggg ttcaacggtt tcgtcgtttc
     4741 cgactgggaa gatatcaaga agctcgtcaa catctggcgc atcgcggcga ctgaaaaaga
     4801 agcgacgcgg cttgcagtga tggccggcat cgatatgagc atggtgccga acgattacag
     4861 ttttgccgat cacctgttgg agctggtgaa agaaggcgcg gtgccgcagt cgcgtatcga
     4921 tgaagcagtg cgccggattt tgcgcgtgaa gtatgagttg ggtttgtttg aaaatcccgg
     4981 accgaacgcg tcgttgaagt cgaatttcgc gaagcccgag tggcggcagg tcgcattgga
     5041 tgcggcgcgc gagtcgatca cgctgctgaa gaacgcgaac aacttgttgc cgctcgcgaa
     5101 gaatcggaaa gtgctggtca ctgggccaac ggcagattcg ctgatctcgc tgaacaacgg
     5161 ttggacttac gtctggcagg gttcggaaga atcgctctat ccgaaagatc gagacacgat
     5221 tcgccgcgcg atcgaagcga aggtcggcgc tgggaatgtg acttacgtgc cgggcacgag
     5281 gatcttccgc cagccgggtt cgacttccaa caacaacccg acgagtctcg aagaagaagt
     5341 tgatattccc gcggcggtgc gtgcggcgca gtctgctgac gttgtcgtac tcgcgctcgg
     5401 cgagggttct tattgcgaga cgccgggaaa catcaccgac ctgacgcttg gcgaaccaca
     5461 gctaaaactc gcggatgcca tcatcgcgac cggaaagccg gtcgtgctgg tgctggtcga
     5521 aggccggccg cgcgttatca atcgcatcgc cgatcgcatt cccgcgatcg tgatggccta
     5581 caatccgagc aacgaaggcg gcaccgcgat cgccgacgtg ctgtttggcg atgtgaatcc
     5641 cagcggcaaa cttcccttca cttatccgcg cacgccgaac ggtttgatca attacgatca
     5701 caaacccttc gaaaccgaga acaccgcgtt tggcaacatg gcgttcaaac cgcagttcgc
     5761 cttcggtgag ggattgagct acaccacgta ctcctacaag gatctgaaat tagacaaaca
     5821 aactatctca ggcaacgaag aactcactgc cacggtcatc gttaccaaca ccggacagcg
     5881 cgccggcaag gaagcggtgc tggtctacgt tagcgatctc gttgcgtcgc tttcacctcc
     5941 caaccgccgg ctgcgacggt tcgcgaaagt gaatctcgaa ccgaatcaaa gccgcacgct
     6001 gacgttcaaa ttgcgacgtg acgacctgtc gtttatcggc gctgacaaca aaccgattgc
     6061 cgagcccgga gagtttgaag tgaggattgg cgacctttcg caaaggttca gattgagatg
     6121 aaaactaacc gctaccttct cgtaacactg gttcttctga cctgtggacc actcgccgtg
     6181 gcccaacagc acaacctgat gccggcgccg gcgtcagtga ctttcgacaa cgagcgtctt
     6241 gccgtcgacg aatcgttcaa agtcgcgact cgcggacatt cagacgcgcg gttgcaagcc
     6301 gcgatcgcgc gcttcgtcaa acgtctcgaa ggccgcactg ttttgacgct cgcgccgggt
     6361 cttgctttag acgatcagat gacgacgctc atcgtccact gcgaaggtcc gggcaaagac
     6421 attcccgcgg tcgatgaaaa cgagagttat cgcatcgaca tcacccgccg tcaggcgctg
     6481 ctgagcgcgc caaccgtgat cggcgcgatt cgcggactcg agaccgtact gcaattactc
     6541 gatgccgatc gccagggtta cttcctgccc ggtgtgaaga ttcacgacca gccgcgtttt
     6601 ccctggcgcg gtttattgat cgacgttgca cgtcacttcg aaccagtcga agtgctcaaa
     6661 cgaaatctcg atgccatggc ggcgttgaag atgaacgtct ttcactggca cctgaccgaa
     6721 gaccagggct tccgtgtcga aagcaagaag tatccgaagc tgcaccagct cggttccgac
     6781 gg
//
LOCUS       DASWTX010001408         3261 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_431728, whole genome shotgun sequence.
ACCESSION   DASWTX010001408 DASWTX010000000
VERSION     DASWTX010001408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3261
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_431728"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..662
                     /locus_tag="VGD38_21410"
     CDS             <1..662
                     /locus_tag="VGD38_21410"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0730658.1"
                     /translation="ILSIYERTKLPEPEASELEITKQEIGYDLLLPDLRSMIADCLEG
                     AERIRDVVQNLRLFSRLDDAEFKPVDLHESLDSTIRLLSRYYGFGVRLVRKYGKLPLV
                     HCYAGQLNQVWTNLLVNAAQSINGEGEVCISTTVEDKAAVIKISDTGCGIEPEHINRI
                     FDPFFTTKPVGEGTGLGLSISYGIIEKHGGAISVESKRGAGSTFKVSIPIENHRSNYL
                     Q"
     gene            659..1660
                     /locus_tag="VGD38_21415"
     CDS             659..1660
                     /locus_tag="VGD38_21415"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HEY0730659.1"
                     /translation="MSYKLLIVDDEQANIRLLERLFRQDYFCLTASSGEEAIELLDQH
                     EVAVIITDQRMPGMNGVELLKRSAARRPHMVRILLTGYTDLEALIEAVNCGLVYMYIN
                     KPWNNEDLKLRVSRAVEHYETNKRQHLLAANNERLTSRLKEMKMGFVRAMASVVQLKD
                     EFLYEHGSRVSKYSIALGEKLGLSAELMLDLTAAAFLHDIGVVTAATEALPHKNAESA
                     AQIVGCITEFKDAADIIRYQYENFDGSGTPLGLIGDQIPLTARVLRVAKEYDLLTNTK
                     NDTPALSPEEAFERLQASSGREFDPHVVLTFSDLVLECGPDRGPMTDNAWCSYTIAP"
     gene            1804..2547
                     /locus_tag="VGD38_21420"
     CDS             1804..2547
                     /locus_tag="VGD38_21420"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEY0730660.1"
                     /translation="MRDRQEMRAFVRSLIEAQEAERRRVSTELHDQVGQILTAVKMNL
                     HALRKTCSSAPEILASIEENLNVINEAVEQVKDLSVDLRPQLLDDFGLVVAVRWYLDR
                     QAKNSGVAVEFVSLSLKDDDRFPAALETACFRILQEGVTNIIRHAGAKRISVRLERAG
                     DELMLVIGDDGVGFDPEAVRAAETASATWGLTGMEERAQALGGTLTIDSAPRLGTQIC
                     AIFPLAVEKVQVEKAKPSVEQASVGSAIR"
     gene            2628..>3261
                     /locus_tag="VGD38_21425"
     CDS             2628..>3261
                     /locus_tag="VGD38_21425"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0730661.1"
                     /translation="MDPIRILIADDHALVRAGIRALVEKIEGVTVVAEAGKGSEAKDL
                     ISQLQPDLVLLDITMPDGNGFDVLLHIQENSPHIRVIVLTVHEAGEYAIRALREGASG
                     FLPKSAASTELEQAIDTVIKGGRYVSPETSQKTVLEFGKGSRQEQLEALSPRQREVLR
                     LIAEGRTTKQIAQTLAISVKTVETHRSQLMERLDIHDVAGLVRYAIVVGLI"
BASE COUNT          769 a          903 c          927 g          662 t
ORIGIN      
        1 tgatcctctc gatctacgaa cgcaccaaac tacccgaacc cgaagcctca gaactcgaaa
       61 tcacgaaaca ggagatcggc tacgacctgt tgctcccgga tctgcgttcg atgatcgccg
      121 actgtctcga aggcgcagaa cgcatccgcg acgtggtcca gaacctgcgg ctgttttccc
      181 gtctcgacga cgcggagttc aagcctgtcg atctgcacga gagtcttgat tcaaccattc
      241 gactgctgtc gcgctattac ggtttcggcg ttcgcctggt gcgcaagtac ggcaagctgc
      301 cgttggtcca ttgttacgcc ggacagttga accaggtctg gaccaacctg ctggtgaacg
      361 cggcgcagtc aatcaacggc gaaggagaag tatgtatttc tacaaccgtt gaagataaag
      421 cagcggtgat caaaatcagc gacacgggtt gcggaatcga gcccgaacac atcaaccgga
      481 tcttcgatcc gttcttcacg accaagcccg tcggcgaagg caccggcctc gggctgtcga
      541 tcagctacgg catcatcgaa aaacacggcg gcgcgatcag cgtcgaaagc aagcgcggag
      601 ccgggagcac gttcaaagtc tcgattccca tcgaaaacca caggagtaat taccttcaat
      661 gagctacaag cttctaatcg tcgacgacga gcaggcaaac attcgtttgc tggagcgact
      721 ctttcgacaa gactatttct gcctcaccgc ttcttcgggt gaagaggcga tcgaactttt
      781 ggaccagcac gaggtggcgg tgatcatcac ggaccagcgt atgcccggaa tgaacggcgt
      841 ggagttgttg aaacgaagcg ccgctcgccg tccgcacatg gtccgcatcc tcctaaccgg
      901 ttacacggat ctcgaagcct tgatcgaagc cgtgaactgc ggcctcgtct acatgtacat
      961 caacaaaccg tggaacaacg aagatctaaa actgcgtgtc agccgtgctg tcgagcatta
     1021 cgaaacgaac aaacggcagc atttactggc ggccaacaac gagcggctca cctcgcggct
     1081 caaagaaatg aagatgggat ttgtacgggc catggcttcg gtggtgcagt tgaaagacga
     1141 atttttgtac gagcacggtt cgcgagtgag taagtattcg atcgcgctcg gcgagaaact
     1201 cggattgagt gcggaactga tgttggacct cacggctgcg gcatttctcc acgatatcgg
     1261 cgtcgtgact gcggccacgg aggctttacc tcacaaaaac gccgaaagcg cggcacagat
     1321 cgtcggctgt atcacggaat tcaaggacgc cgccgacatc attcgttatc aatacgaaaa
     1381 ctttgatggc agcggcacgc cgctcggatt gatcggcgac cagattccgt taaccgcacg
     1441 cgttctgcgc gttgcgaaag aatacgattt gttgaccaac acgaagaacg acactcccgc
     1501 cctgtctccc gaggaagcgt tcgaacgttt gcaagccagc agtggacgtg aatttgatcc
     1561 gcatgttgtg cttacgtttt ccgatctcgt gctagaatgc gggccagaca gaggtccaat
     1621 gaccgataac gcgtggtgtt cgtacacgat cgccccgtag tccacgcgag atccaatcaa
     1681 ttctttttga gcctgtgaaa ttttcaactg cgccgcaact cctccggtga acccagtatg
     1741 ctgggaagtg tgcggcgcca ggctgttctc tgacggtacc ttgactcctg gaggtttcca
     1801 gttatgagag acaggcaaga aatgcgcgcc tttgtgcgtt cgctgatcga agcgcaagag
     1861 gctgaacggc ggcgggtttc caccgagtta cacgatcagg tgggacaaat cctgaccgcc
     1921 gtgaagatga acctccacgc gctgcgaaag acttgcagta gtgcgcctga aattctcgcg
     1981 tccatcgaag aaaatctgaa cgtgatcaat gaagcagtcg agcaggtcaa ggatctgtcc
     2041 gtcgacctgc ggccgcagct tttggacgac ttcggcctgg tagtggccgt gcgttggtac
     2101 ctcgatcggc aggcgaagaa cagcggcgtg gccgtggaat tcgtcagtct gtcgctgaag
     2161 gacgacgacc gttttccggc tgctctcgaa accgcgtgtt ttcgcatcct gcaggagggt
     2221 gtcacgaaca tcattcgcca cgccggcgcg aaacgcatct ccgtccggct cgagcgcgcg
     2281 ggtgacgaat tgatgttggt catcggcgac gacggcgtcg gattcgatcc ggaagcagtg
     2341 cgcgctgccg agacggcgtc cgcgacgtgg ggcttaacgg gaatggaaga acgcgcacag
     2401 gcgctcggtg gaacgttgac cattgactcc gctccccggc tcggcacgca gatttgtgcg
     2461 atttttccgt tagcagtgga aaaggttcaa gtagaaaaag caaaaccgtc ggtagaacag
     2521 gccagcgttg gcagtgccat caggtaattc ctgattgtga tatcagggat ttcctgcaat
     2581 gatactcggg cttcaccagc ttgccggtat cacgaaaact gaaaacgatg gaccccattc
     2641 gcatcctcat cgctgacgac catgcattag tgcgcgctgg gattagagcc ctggtggaga
     2701 aaatcgaagg ggtaacggtc gtcgcggaag ccggtaaggg tagtgaagcc aaagacttaa
     2761 tcagtcagtt acaacctgat ttggtgctac tcgacatcac gatgcccgac ggcaacgggt
     2821 tcgacgtcct gttgcacatc caggaaaatt ctccgcacat tcgagtcatt gtcctcacag
     2881 tccacgaagc gggcgagtac gcgatccggg ctttgcggga aggcgcctcc ggttttctcc
     2941 ccaaaagtgc cgcgagcacg gagctcgaac aggcgatcga cacggtcatc aaaggcggcc
     3001 gctacgtctc acccgaaacc tcccagaaaa cggtgctgga gtttggcaaa ggcagcagac
     3061 aggaacaatt ggaggccctc agcccccgcc agcgggaagt gctgcgtctg attgccgagg
     3121 gccggacgac gaagcaaatc gcccaaacgc tcgccatcag cgtcaaaacc gtcgaaactc
     3181 accgctcgca actgatggaa cgattagaca tacacgatgt tgccggactt gtgcggtatg
     3241 ccatcgtcgt cggtttgatc c
//
LOCUS       DASWTX010001409         1631 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_86408, whole genome shotgun sequence.
ACCESSION   DASWTX010001409 DASWTX010000000
VERSION     DASWTX010001409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1631)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1631
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86408"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            484..1386
                     /locus_tag="VGD38_21430"
     CDS             484..1386
                     /locus_tag="VGD38_21430"
                     /inference="COORDINATES: protein motif:HMM:NF012610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEY0730662.1"
                     /translation="MRIWLSKNSEVPIREQLVTQIVLGIVSNDLKVNERLPSTRDLAR
                     RYDIHANTVSAAYRELARRGWVEFRKGSGVYVRGRTDDKLDQHLALDHLVSRFFRTLR
                     EEGHSLAEIQEAVRRSFSLQRPDHFLLLESDPELREILVAEIASAAKVKVKGVGPEGL
                     DGAGSLTGATPLALYGHLESFDEWIGSQTDVLVLHSASVVESMKGQTRPPADALVAIV
                     SRWPEFLRWARTMLVAAGLDADALSFRDARERGWEKGLRSATFVITDSLMAPRIPAGC
                     EVKIFRVLAQSSIKEIREYAERFF"
     gene            complement(1383..>1631)
                     /locus_tag="VGD38_21435"
     CDS             complement(1383..>1631)
                     /locus_tag="VGD38_21435"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEY0730663.1"
                     /translation="KGNCVFCHGDTGAGNEANLPRLRRKPADLTKKERMTAMTDGELF
                     WKVSKGITGIMPAGENRMKDPEERWHVVNYIRTLAKEN"
BASE COUNT          336 a          456 c          483 g          356 t
ORIGIN      
        1 aatatgcttc cgcaggccga aatcaagtag tgccgcagtt gcaaaatcag taatgccgca
       61 gttgcaaaat cagtagtgcc tcggtttcaa aattacgccg aaggcgttcg ctaattttag
      121 cccagggttg gcacaaccct gggtaacata gtaaagaaac gaacgcaacg ctgaaagcgt
      181 tcgcgagcat gcacgtccgt ttgccaacgc tttcagcgtt cgaatgctgt gttgttgaaa
      241 cccagggttc tcgcgatgct cgaaccctgg gctgaaatta gcgaacgcct tcggcgtatt
      301 caccgaaact tcaaaccgag gcgtacgcga aacttcaaac tgaggcacta cgctgaactt
      361 caaactgagg cactacccga aatcagcacc gcgggcgtga tcatggccgt caacacggcg
      421 atggcagagg cggaatccac gttgctcttt tataggtaat gctgtaaatc ctgtcaaaac
      481 ccgatgcgca tctggctttc caaaaacagt gaagtgccga ttcgcgaaca actggtcaca
      541 cagattgtcc tcggcattgt cagcaacgac ctcaaagtga acgaacggct gcccagcact
      601 cgcgacctcg cgcgccgtta cgacattcac gcgaacaccg tcagcgcagc ctatcgcgag
      661 ctcgcccggc gtggctgggt cgagtttcgc aaaggcagcg gcgtttacgt gcgcgggcgc
      721 acggacgaca agctggacca gcatctcgcg ctggaccacc tggtgtcgcg tttcttccga
      781 acgctgcgcg aagagggcca ctcgctcgcc gaaatccagg aagccgtgcg gcgctcgttt
      841 tcactgcagc gcccggacca ctttctgctg cttgaatccg atccggagtt gcgtgaaata
      901 ctcgtcgccg agatcgcgtc cgcggcgaag gtgaaagtga aaggcgttgg accagaaggt
      961 ctcgacggcg ctggttcgtt aaccggcgcg acgccgttgg cgttgtacgg ccatctcgag
     1021 agtttcgacg agtggatcgg ttcgcaaacc gatgtgctgg tgctgcattc ggcttcggtg
     1081 gtcgagtcga tgaaaggaca gacgcgcccg cctgctgacg cgctggtggc gatcgtgtcg
     1141 cgctggccgg agtttttgcg ttgggcgcgc acgatgctcg tcgctgcggg gctcgacgca
     1201 gacgcgttga gctttcgcga cgcacgcgag cgtggttggg agaagggatt gcggtcggca
     1261 acgtttgtga tcaccgactc gctgatggcg ccacgaatcc ccgcgggatg cgaggtcaag
     1321 atctttcgcg tgttggccca gtcgtctata aaagaaatcc gcgagtacgc agaaagattc
     1381 ttttagtttt ctttcgcgag tgtgcggatg tagttgacca cgtgccaacg ttcttccgga
     1441 tctttcatgc gattctcacc cgccggcatg atgccggtga tgccttttga aaccttccaa
     1501 aagagttcgc cgtcggtcat cgccgtcatc cgttctttct ttgttaggtc ggcgggtttg
     1561 cggcgcagcc ggggaagatt cgcttcgttg cccgcgccgg tgtcgccgtg acagaagacg
     1621 cagttgcctt t
//
LOCUS       DASWTX010001410         4400 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_149325, whole genome shotgun sequence.
ACCESSION   DASWTX010001410 DASWTX010000000
VERSION     DASWTX010001410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4400
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149325"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..850)
                     /locus_tag="VGD38_21440"
     CDS             complement(<1..850)
                     /locus_tag="VGD38_21440"
                     /inference="COORDINATES: protein motif:HMM:NF021997.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HEY0730664.1"
                     /translation="MPKKKAKDRQEETESTISRRSVLKIGAAAGAATVVAPHVLGPSK
                     ALGFTGEPPAEPTVRCVNTVPATPSPAHRPFIDNFTAPFPAIPTFLSPAPQEFQNAGA
                     GEAPRAPHQRWSQFPADVWYEMDARASTHKFHADFGDTYIWGFNGKYPAATVLNIYGH
                     PAIVRFRNSLPTSTTTFGRNEITIHLHNGHHGSESDGFAGDFFTTGFWKDHLYPNCYA
                     GLDAFGGNGDPKEKMGSFWFHDHRAEFTLNNNVLGLNGMFLVYDPTDPGHELATSGSL
                     RLPGYYG"
     gene            complement(1201..1710)
                     /locus_tag="VGD38_21445"
     CDS             complement(1201..1710)
                     /locus_tag="VGD38_21445"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEY0730665.1"
                     /translation="MDKRVEKILEMMRDDVRGELSLAEFAQSVNLSVWRLCHIFKSDV
                     GMPPIKYLRLLRMERAKGLLESSFLSVKEIAFQVGLNDESHFVRDFKATYGHSPAIYR
                     SQFKRNGNGNGNNNGNGHGHGSSNGNGNGLDQPHSSQPTKLSRHLTSAAKQSILPTLQ
                     LFVYVVYCF"
     gene            complement(2114..3124)
                     /locus_tag="VGD38_21450"
     CDS             complement(2114..3124)
                     /locus_tag="VGD38_21450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HEY0730666.1"
                     /translation="MILKSRVFNLAFLLALAVMTPGVLKAQEPMNEVPLGTTSTGTKT
                     GGAGSLANGIESIDGTGGTTTTASTSGPEAVAFDGTYVWVATQFSDSVTRVRASDGAV
                     SGKYTVGKRPVALLYAAGSIWVANLLSDTVTKLNPATGAVAGTYAAGDGPGGLAFDGT
                     SLWIANREGNTVTKMSTSGSRLGTFAVGHRPLGIAFAANSIWVANNFSNSVTRLSTAG
                     AVLGTYPVGKGPFGVAGQGENIWVTNYFSKSVTKLRAADGANLGEFTVGDGAAGILFD
                     GTFVWVVNNGDSTLMKLTPADGAVVTTYATGKGPFAVAYDGNKVWVPNFASNSVSTAS
                     VN"
     gene            complement(3121..3786)
                     /locus_tag="VGD38_21455"
     CDS             complement(3121..3786)
                     /locus_tag="VGD38_21455"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEY0730667.1"
                     /translation="MTDLKRRNLVAALGAAPFVLPVLGAAQSVETGSKFKVIPSRERI
                     RDRYFPNLSLTTQEGRTVRFYDDLVKDKIVVFNMFYAKCEGICSPVTRNLVRVQKQLG
                     NRVGKDIFFYSFSLKPKEDNVEALKHYAHMHKVGPGWLFLTGKPDDMELLRRKLGFVD
                     PDPEVDKDLSNHIGVIKFGNEPLERWGGCPGMKSPDSIVEAISWIDWPKNQASLKAKG
                     GTR"
     gene            complement(3868..>4400)
                     /locus_tag="VGD38_21460"
     CDS             complement(3868..>4400)
                     /locus_tag="VGD38_21460"
                     /inference="COORDINATES: protein motif:HMM:NF019351.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEY0730668.1"
                     /translation="KILKIIVDGPVVPDNSIDPATIPANQAVYFYGFPNTNDAPRITR
                     TFRFERGNGQWQVNGQLVGDCDDAPRFRIKRNSVEKWIFQNNSGGWQHPIHMHFEEFQ
                     TLSINGNPPAASGLITKGRKDVFRLEHNMEATVYFRFRDFVGRIPLHCHNVVHEDHAM
                     MVLGLIDDVGDNRTNP"
BASE COUNT          914 a         1198 c         1233 g         1055 t
ORIGIN      
        1 tgccgtagta tcccggcagg cggagagaac cgctggtcgc gagctcatgg cctggatcgg
       61 tcggatcata gaccaggaac atgccgttca ggccgagcac gttattgttc agcgtgaact
      121 ccgcacggtg atcgtggaac cagaaggagc ccatcttttc tttcggatcg ccgttgccgc
      181 cgaaagcatc gaggccggcg tagcagttcg gataaagatg gtctttccag aatccggtcg
      241 tgaaaaagtc tcccgcaaaa ccgtcactct cagaaccgtg gtgtccgttg tgcaagtgga
      301 tcgtaatttc gttacgaccg aatgtggtgg tgctcgttgg caggctgttc cggaagcgca
      361 ctatggccgg gtggccatag atgtttagta ctgtcgctgc cggatatttg ccgttgaagc
      421 cccaaatgta ggtatcgccg aagtcggcgt ggaacttatg ggtgctggct ctcgcatcca
      481 tttcgtacca cacgtccgcc ggaaattgtg accagcgttg atgtggagca cgtggtgctt
      541 cacccgctcc cgcgttttga aactcttgtg gagccgggct caaaaacgtc ggaatcgccg
      601 gaaacggagc cgtgaagttg tcgataaacg ggcgatgagc cggactcggg gttgccggta
      661 ctgtgttaac gcagcggacc gttggctcgg ccggtggctc accggtgaag ccgagtgcct
      721 tgctcgggcc caacacgtgg ggcgccacga ctgtagcggc acccgctgct gcacctatct
      781 tgagcacact tcttctactg attgtggatt cagtttcctc ttgccggtcc tttgccttct
      841 ttttaggcat agaatctcct ttcagccgtt cggttggcct caattctaag aatcctttgc
      901 tagtggttat gaccttaccc tggaaccgtg gcgatcaagc tctcgatcct ggtccaactt
      961 cccggcaaag gcgatcagtt cgaaaggcga gggctctgct gaaacagttg agtaacgtca
     1021 gttgactaaa gcgaaaaata ctgatggtga aaactaccga ctgttgcgct gtgctgaatc
     1081 gccacacagc ttacgatctc gaatttcgta gaacaagact tcttgcttgg cgtttcttgt
     1141 cgttcgttag cggattttgc tccgccaact tttccgcttg cggcggttcg cggtcgctgc
     1201 tcagaagcaa tagaccacgt agacaaatag ttgcagcgtg ggcagtatcg attgctttgc
     1261 cgcgctcgtc aggtggcggc taagtttggt tggctgacta ctgtgcggct ggtccaggcc
     1321 gttgccgttt ccattgctgc tgccgtgccc gtgcccgttc ccattgttat ttccgttacc
     1381 atttccgttg cgcttgaact gcgagcggta gatcgccgga gagtgtccgt aagtcgcttt
     1441 gaaatccctg acgaaatgac tctcgtcgtt caagccgacc tggaaggcaa tctcttttac
     1501 gctcagaaaa cttgattcca gcagtccctt ggctctttcc atgcgcagca atcgcaaata
     1561 cttgattggc ggcatgccca cgtctgattt gaaaatgtgg cagaggcgcc agacggaaag
     1621 gtttacagat tgtgcgaatt ccgcgagaga cagttcaccg cgaacgtcat ctcgcatcat
     1681 ctcgagaatt ttttctactc ttttgtccat tccaatgacc cacgatttga aggcgcagtt
     1741 atcaatccag gagagctaag ctcacttcac agcaaccttc agttgaatga cccgtgaggt
     1801 ggaaaatcgg gttttctggg cagaaagcta ttggagcaaa ctgagtcggg caaatatttg
     1861 atcgcctttg cgaggtgcga tgcatcctcc cggtagagct tgggagtggt cgttcgggag
     1921 ttgcgactta atactacagt gacaaacttc tgtcaacggg gacacacttt tgtgactact
     1981 ttgaaaggtt cgtttacatt gccctcaggg tttttcccgg gcgcctgttg agaatgctga
     2041 atctagttgt gcgttaacga acaaagccgg ctgctcgcaa gaacagccgg cctcgtggtc
     2101 cagcaaactg aggtcagttt acggatgcag tggaaacaga gttactggcg aaattcggta
     2161 cccaaacctt gtttccgtca tacgcaactg caaagggacc tttgccggtt gcgtaagttg
     2221 tgacgaccgc gccgtccgcc ggtgtcagct tcatcagcgt gctgtcgccg ttgttaacga
     2281 cccaaacaaa tgtgccgtca aacaggattc ccgcagctcc atcgccgacc gtgaactcac
     2341 cgaggtttgc gccatcggcg gcccggagtt tggtaacgga tttgctgaaa tagtttgtga
     2401 cccagatgtt ttcgccctga ccggcaacgc cgaaggggcc tttgccgacc gggtaggttc
     2461 ccaacacagc tcccgccgtg cttagccggg taactgagtt gctgaagtta ttcgccaccc
     2521 aaatgctgtt ggcggcgaag gcgataccga gcgggcgatg tccgacagcg aacgtgccga
     2581 gccgggatcc gctcgtactc atcttcgtga cggtgttgcc ttcacgattg gcgatccaaa
     2641 ggctggtacc gtcaaaagcg agtccgccgg gtccgtcacc ggcagcgtaa gtgccggcga
     2701 cagctccggt cgctggattc aacttggtca ctgtatcgct gagcaggttc gctacccaga
     2761 tcgaaccggc ggcataaagc agcgccaccg ggcgtttgcc gacagtgtat tttccggaga
     2821 ccgcgccgtc agaagcacgc acgcgggtaa ccgaatcact gaattgagtc gcgacccaaa
     2881 cgtaggtacc gtcaaacgcg acggcttcgg ggccactggt agacgccgta gtggtggttc
     2941 cgccagtacc gtcgatgctt tcgataccgt tcgccagaga accggcgccg ccggtcttgg
     3001 tcccagtgct tgtggtgccc aacggaacct cgttcatcgg ctcctgggct ttcaacacac
     3061 ccggtgtcat cacggcaagc gccaataaaa acgccaggtt gaaaactctc gatttgagaa
     3121 tcatctcgta cctcccttcg cttttaggct tgcctggttc ttaggccaat caatccaact
     3181 gatcgcctcc acgatcgagt cgggtgactt catccccgga caaccgcccc agcgttcaag
     3241 gggttcgttg ccgaatttga tcacgccgat gtgattggag agatctttgt ccacttccgg
     3301 atcaggatcg acaaagccga gcttgcgccg aagcaattcc atatcgtcgg gttttcccgt
     3361 gaggaacagc cagcccggcc ccactttgtg catgtgcgca tagtgtttga gggcttcgac
     3421 gttgtcctct ttgggtttga gactaaacga atagaagaag atatctttgc cgacacgatt
     3481 gcccagttgc ttctgaaccc tgaccaggtt cctcgtgacc ggcgagcaga tgccttcaca
     3541 cttcgcatag aacatgttga agaccacgat tttgtccttg acgagatcgt cgtagaaccg
     3601 aacagtgcgc ccttcctgcg tggtcagcga aagattcgga aaataccggt cacggatccg
     3661 ttcgcgtgat ggaatcactt tgaacttcga tccggtctcg accgactgcg cggcgccaag
     3721 cactgggaga acgaaaggcg cggcgcccag tgcggccacc agatttctgc gtttcaagtc
     3781 tgtcataaga attcctttct tcagattcac tgagtcaagg tctccccgag cgcagcagag
     3841 ttgttgcgcg ggaacaccac acaacaacta cgggttagtc ctgttatcgc cgacgtcgtc
     3901 gatgagaccg agcaccatca tggcgtggtc ttcgtgaacc acgttgtgac agtgcagcgg
     3961 aatacggcca acgaagtcgc ggaaacggaa atagaccgtc gcttccatgt tgtgctctaa
     4021 cctgaagacg tctttcctgc ccttggtaat cagtccggag gctgccggcg gattaccgtt
     4081 gatggaaagg gtctggaact cttcgaagtg catgtgaatg gggtgttgcc acccgcccga
     4141 gttgttctgg aagatccact tctcgacgct gttgcgctta attcgaaaac gtggcgcgtc
     4201 gtcgcagtcg cccacgagct ggccgttgac ttgccactga ccattgccac gttcgaaacg
     4261 gaacgtgcgc gtgatgcgcg gcgcgtcgtt ggtgttcggg aacccgtaga agtagaccgc
     4321 ctggttcgct ggaatcgttg ccggatcgat actgttgtcc ggaacgaccg ggccgtcgac
     4381 gatgatcttg aggatcttgt
//
LOCUS       DASWTX010001411         4899 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_431987, whole genome shotgun sequence.
ACCESSION   DASWTX010001411 DASWTX010000000
VERSION     DASWTX010001411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4899
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_431987"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..754
                     /locus_tag="VGD38_21465"
     CDS             <1..754
                     /locus_tag="VGD38_21465"
                     /EC_number="2.4.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEY0730669.1"
                     /translation="SDIVMVFDECAPGKATHEETERSMELTTRWARRSKLAFDRFQNE
                     ETDTGRVEAPELSGRQALFGIIQGAGHLDLRRRSLEQTVEIGFDGYAIGGLSVGEEKS
                     VMFEVIDEIAPRLPHESPRYLMGVGTPEDLVEAVARGVDMFDCVLPTRNGRTGQAFTS
                     RGKLNIKNAQWAKDPRPLDESCACSVCRRHSRSYLRHLYLTGEMLASILLTHHNLAFF
                     LDTMRRVRQSIRSGHFPKFRREFTERLGANGE"
     gene            812..1102
                     /gene="yajC"
                     /locus_tag="VGD38_21470"
     CDS             812..1102
                     /gene="yajC"
                     /locus_tag="VGD38_21470"
                     /inference="COORDINATES: protein motif:HMM:TIGR00739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEY0730670.1"
                     /translation="MQSGAGGLIQLMPILLIILVFYFLIIRPQQKRQRQLQETIANLK
                     IGDRIVTTGGVIGVITTVRDTSFLIRSADKSILEIARTSIAGIDEEGTKASS"
     gene            1118..2818
                     /gene="secD"
                     /locus_tag="VGD38_21475"
     CDS             1118..2818
                     /gene="secD"
                     /locus_tag="VGD38_21475"
                     /inference="COORDINATES: protein motif:HMM:TIGR01129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEY0730671.1"
                     /translation="MKKKNLLYRVIIILVVTIVGLYLVIGPRRRPTLKDFTWSGIKAS
                     LASNIKLGLDLQGGSHLVMRVKTEEFLKTLTEQNYVAAQNAAKDAGFEIKGGQAVTTG
                     GDYRIVLEPADPSKANEIKDTVEKKVELADTTVWSYNASGSQMTWSMTQAAQRLLADN
                     ATTQALTIIDSRINALGITEPTLQTHGSQSSHQILLQMPGVQDPERVKALLQGQSKLE
                     LVHVIGPPSPAPATTYPTEADATAAASSGGIMPPNRKVLPYSERMELTAEQDPNQQRP
                     KQWVVVEVPAIIDGSELRNATAVSSQGGRADDYEINFSLKKAGADKFGQWTGSHINEY
                     MGVVLNNEVKSIAYIKSQIYDQGQITGRFTQQSAEDLALTLRSGALPAPIEYLEERTV
                     GPSLGADSIRAGVRASLVGLGLVVFFMLIYYRGSGVNAVVALILNMILMLAGLIVFGA
                     TLTLPGIAGIILTIGMAVDSNVLIFERIREEIRSGKTIPSAVDQGFTRAFITIIDTHV
                     TTIVSSLFLFVFGTGPIRGFAVTLVIGLLVNLFSAVYVSRTIFIWLLSRKERVESLSI
                     "
     gene            2828..3880
                     /gene="secF"
                     /locus_tag="VGD38_21480"
     CDS             2828..3880
                     /gene="secF"
                     /locus_tag="VGD38_21480"
                     /inference="COORDINATES: protein motif:HMM:TIGR00966.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HEY0730672.1"
                     /translation="MFQILHDVKVDWLGNRRVFIAISVLLMLAGLGSAIFRQATGGQA
                     FNLGVDFKGGTVVTANFKQRPSDEQIRAALNEKGVRDAVVQSVRDNPNTVLIKVPLEG
                     ESQDGRARVREALNVFGQEAKPELDLYADPNAAYKIVGTEAVGAIAGAQLRNKAIAVT
                     LAALVGILVYIAFRFEWTYGAAAVIAVFHDVLVTLGFFSIFQWEVSLTVIAALLTLVG
                     FSVNDTIVVFDRIRENRRLQRRDSLYKITNDAINQTLSRTVITNGLVFLSVLALVLFG
                     GDVLRAFSLALFIGVIFGTYSSIAIASPIMVWWEQRLEAANRQAALAYNQPVKGGVRT
                     PAKTAKPAGRRASAKL"
     gene            4254..>4899
                     /locus_tag="VGD38_21485"
     CDS             4254..>4899
                     /locus_tag="VGD38_21485"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEY0730673.1"
                     /translation="MFDNLVESSSHKQDISRKGSFILATTLIYGVLIAAFVVGSILWY
                     DAHLAEQELELTTLVAPVPVPQQQKQPEQQKQEAKPTKVEQNVDVRRELIADVAESRV
                     PPKEISAKASDVPPVRAGVVTRLGTADSNASAPMPAGPGSGTVTTAPTKVTIAEEPPP
                     PAPTPTPRTAPISGGVLNGKAISLPKPQYPPIARAAHASGTVVVQVLIDENGNVV"
BASE COUNT         1051 a         1370 c         1412 g         1066 t
ORIGIN      
        1 gtctgacatc gtgatggttt ttgacgagtg tgcgcccgga aaagcgactc acgaagaaac
       61 cgagcggagc atggaactca cgacgcgttg ggcgcgccgc tcaaaattgg cctttgatcg
      121 gtttcaaaat gaagaaaccg acacgggccg cgtcgaggcg ccggaactca gcggacgcca
      181 ggcgctcttc ggcatcattc agggcgccgg ccatctcgac ctgcggcggc gcagtctcga
      241 acaaaccgtc gagatcggtt ttgacggcta cgccatcggc ggactcagcg ttggtgaaga
      301 gaaatcggtg atgtttgaag ttattgacga gatcgcgccg cgcttgccgc acgaaagtcc
      361 gcgttatctg atgggcgtcg gcactcccga ggatctcgtc gaagcggtcg ctcgcggtgt
      421 cgacatgttc gattgcgttt taccgacgag aaacggccgc accggccagg cgttcacttc
      481 gcgcggcaag ctgaacatca agaacgcgca gtgggcgaaa gatccgcgcc cgttggacga
      541 gtcatgcgcg tgttccgtct gccgccgcca ctcgcgttcc tatttgcgac acctctatct
      601 aacgggcgaa atgctggcca gcatcctgtt aacccaccac aatctggcct tcttccttga
      661 cactatgcga cgtgtgaggc aatctatccg gtctggccat ttccctaaat ttcggagaga
      721 gttcaccgag cggctgggtg cgaatggtga atagtggttc gcgagctagc cgcatctgtt
      781 tgtttaggaa acaatgttaa ctcttttgtt cttgcagagc ggtgcaggtg ggttgattca
      841 gttgatgccc atcctgctga ttatcctggt cttctacttc ctaataataa ggcctcagca
      901 gaagcgccag cggcaactcc aggaaaccat agccaacttg aagattggcg atcgcatcgt
      961 gactactggc ggcgtgatcg gcgtgatcac gaccgttcgc gacaccagtt tcctgattcg
     1021 cagtgccgat aaatcgattc tcgagatagc ccggacttca attgccggca ttgacgagga
     1081 aggaaccaaa gccagcagct aatccacgat ttttgtgatg aagaaaaaga acctcctcta
     1141 tcgcgtcatt atcattctcg tcgttacgat tgtcggcctt taccttgtga tcggtccgcg
     1201 ccgtcgtccc accctcaagg atttcacctg gtcgggcatc aaggcctcgc tcgcctcgaa
     1261 catcaagctc ggtcttgacc ttcagggcgg ctcgcacctc gtgatgcgag tgaaaacgga
     1321 agagtttttg aagactctga ccgaacagaa ctacgtcgcc gcgcaaaacg cagcgaagga
     1381 cgccggtttt gagatcaaag gcggtcaggc agtaacgaca ggtggtgatt atcggatcgt
     1441 tctcgaaccg gccgatcctt ccaaggctaa cgaaataaag gacacggtcg aaaagaaggt
     1501 cgaattggcc gacacgactg tgtggtcata caacgcgtct ggcagccaga tgacctggag
     1561 catgacgcag gcagcccagc gtctgctcgc cgacaatgcg accacgcagg cgttgaccat
     1621 catcgacagc cgtatcaacg ctctcggtat tactgaaccg accctgcaaa cgcacggctc
     1681 ccagagttcg caccagatcc tgttgcagat gccgggtgtt caggatccgg aacgcgttaa
     1741 agcccttctg caaggacaat cgaagctcga actcgttcac gtaatcggtc cgccgagccc
     1801 ggctcctgcg accacgtatc cgactgaagc cgatgcaact gcggccgctt cgtcaggcgg
     1861 cataatgcct ccgaaccgta aagttttgcc ttatagcgag cgcatggaac tgacggccga
     1921 gcaggatccg aaccagcagc ggccgaagca gtgggtcgtg gtcgaagttc cggcgatcat
     1981 cgacggcagc gagttgcgca acgcgacggc ggtgtcgagt cagggcggac gcgcggacga
     2041 ctacgagatc aacttctcgc tcaagaaagc cggcgcggac aagtttggac agtggacggg
     2101 ctcgcacatc aacgagtaca tgggcgtcgt cctcaacaac gaagtcaaat cgatcgccta
     2161 catcaagtcg cagatttacg atcagggaca gatcaccggc cgctttacgc agcagtcggc
     2221 cgaagatctc gcgctgacgt tgcgttcagg tgccttgccg gcgcctatcg aatatctcga
     2281 agagcgcacg gttggaccaa gcctcggcgc tgattcgatt cgcgcgggtg tgcgtgcttc
     2341 gctcgtcggt ctcgggctgg tcgtgttctt catgctcatc tactaccgcg gttccggcgt
     2401 gaacgcggtg gtggcgttga tcttgaacat gatcctgatg ctcgccggac tgatcgtctt
     2461 cggtgctacg ctgacgctgc caggcatcgc cggcatcatt ctcacgatcg gtatggccgt
     2521 cgactcgaac gtgctgattt tcgagcgtat acgtgaagaa atacggagcg gaaaaacgat
     2581 tccgtccgcc gtcgatcagg gattcacgcg cgctttcata accattatcg acacccacgt
     2641 gacgacgatt gtttcgtcac tgttcctgtt tgtgtttggc accggcccga ttcgcggttt
     2701 tgccgtgacg ctggtcatcg gactgctggt gaacctgttc tcggccgttt atgtgtcgcg
     2761 cacaatcttc atttggctgt tgagccgaaa ggaaagagtg gagtcgctca gtatttaaga
     2821 attcatcatg tttcaaatcc tgcacgatgt aaaagttgac tggctgggta accgccgtgt
     2881 gtttatcgcc atttctgtgc tgctcatgtt ggctggtctg ggctccgcga tttttcgcca
     2941 ggccaccggc ggtcaggcgt tcaacctcgg cgtcgacttc aaaggcggaa cggttgttac
     3001 ggccaatttc aagcagcgtc cgagcgacga gcagatccga gccgcgctca atgaaaaagg
     3061 cgtccgcgat gccgtagtcc agtccgtccg agacaatccg aacacggtgc tgatcaaggt
     3121 gccgctggaa ggtgaaagcc aggatggccg agcgcgcgtg agagaagcgc tgaatgtttt
     3181 cggccaggaa gcaaagccgg agcttgatct atatgccgat ccgaatgctg cctacaagat
     3241 cgtcggcact gaagcagtgg gcgcgattgc cggggctcaa ctgcgcaaca aagcgatcgc
     3301 ggttacgctc gccgcgctgg tcggtattct cgtctatatt gcgtttcgct ttgagtggac
     3361 ctatggcgcc gcggccgtca tcgcggtgtt tcacgacgtg ctcgtgacgt tagggttctt
     3421 ttcgatcttt cagtgggaag tcagcttgac ggtgattgcg gcgttgctga ctcttgtcgg
     3481 tttttccgta aacgatacca tcgtcgtttt cgaccgcatc cgagagaatc gcaggctgca
     3541 acgccgcgac tcgctctaca agatcaccaa cgacgcgatc aatcagacgc tgtcacgcac
     3601 agtgatcacc aacgggctgg tattcctttc cgtgttggcg ctggtgctgt tcggcggcga
     3661 cgtgttgcgt gcgttttcgc tcgcgctctt cattggcgtg atctttggta cttactcatc
     3721 gatcgccatc gcgagtccga tcatggtctg gtgggagcag cggctcgaag cggcaaacag
     3781 acaagcggca ttggcataca accagcccgt caagggcggt gtgcgcactc cggcgaaaac
     3841 ggcgaaaccc gccggccgcc gtgcgagtgc aaagttatag tcacaacagg gaataacaag
     3901 gttacgaggc ggcccagaac gtctcagttt ggtttgcgct tgactttgaa aggtcatgag
     3961 gactagactg cgcacgttgc tggccaatta aataactcaa gtgtcgaccc cgcgtgtgtg
     4021 aaatcaggtt gttgggcgcg gcggcggtgt gttgagcggg ccggcgagtt ttttctcgca
     4081 cagcggcttt ccaatccaaa cggtgtgctc aatatcgcaa aagctgctgt ttccccttca
     4141 agagtgacgg atctcaagcg gtacccaaat cgacgtttgc gagaggcagt tttactgctt
     4201 aatttttcgt aacccctgat ccatttggcg ccggaatcgg aggattaata tcaatgttcg
     4261 ataacttagt tgagtccagt tcgcacaaac aggacatttc gcgaaaaggc tcatttattc
     4321 tcgctaccac attaatctac ggagtgctga tagcggcatt cgttgtgggc agcattctct
     4381 ggtacgacgc tcatctggcg gaacaggagc tggagctgac cacgcttgtg gctcccgtgc
     4441 ctgtgccgca gcaacagaaa cagcctgagc agcagaaaca ggaagcaaag ccgactaagg
     4501 tcgagcagaa cgtcgacgtt cgtagagagc tgatcgccga cgttgcggaa agtagagtgc
     4561 cgcccaagga gatttctgcc aaagccagcg atgtgcctcc ggttcgcgct ggcgtagtga
     4621 cgcggctcgg caccgccgac tctaatgcca gtgccccaat gcccgccggg ccagggtccg
     4681 gcactgtcac taccgcgccg acgaaagtaa ccatcgccga ggaaccgcca ccgccggctc
     4741 cgacaccaac tccccgtaca gcgccgattt ccggcggcgt gctcaacggt aaggccatca
     4801 gcttaccgaa gccgcagtat ccaccaatcg ccagggcagc acacgcatca ggcaccgtcg
     4861 tggtccaggt gctgatcgac gaaaacggca acgtggttt
//
LOCUS       DASWTX010001412         2066 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_192912, whole genome shotgun sequence.
ACCESSION   DASWTX010001412 DASWTX010000000
VERSION     DASWTX010001412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2066
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192912"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            226..693
                     /locus_tag="VGD38_21490"
     CDS             226..693
                     /locus_tag="VGD38_21490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730674.1"
                     /translation="MKFPVMALVIASIVTLVTPHNVANYNNTVSGAQTASAESASVAF
                     NLNATGDLPGMLSVTLKHEGGNVNGGTWTLTVLPPNADATSSESGTLSGSFSGGTLTL
                     DANGIATAANSIQLTVTSGAGQFASITSGSGTLNLSADAENSTKLGGPLALSF"
     gene            793..>2066
                     /locus_tag="VGD38_21495"
     CDS             793..>2066
                     /locus_tag="VGD38_21495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730675.1"
                     /translation="MFPCASKTRTNLTINLQHFITLLLAYCLLIQTIAPPALATARPG
                     FSFAWLNNGVASLTSVFKKPNSAQPAAAAAAVPVKQSTEEFGVVLTQLSTAFSGHAGI
                     EHHQPLRKVVVSANSPSGMPLNFESLDEDGTHRPYSNVAGLTGAKKIATARDDGTGMS
                     IGGFVPGELFSGTGVPGVIARVAADGATVQNPWVTLPGETGSEAGLSIDRTGVFGGDL
                     IAVTTTGGVWRITSAGVATRVADLGTPLEGVTTVPNDVPNYGPWAGKILAGAKTQNAI
                     YAIDAQGAFTSTDIGISPQDIRIIPAHENFYGVDAASSKIWGAPDDAFAGIIGDVLIA
                     QGSPGVLLRASWNGTEIELGEIAEVPSWKQITFSPAALSEIAGVKQFYDKIAVVRHAP
                     ELNSGRVEGALWQLLPENLVLDGTDVITSDLLV"
BASE COUNT          469 a          635 c          578 g          384 t
ORIGIN      
        1 agtggcctcc ggtagcgggc ataatacgcc tcatgacgat cttaaaaaag gccaattgac
       61 agattctagt aactgcacta acgtcatgcg ccgtcaacgc acttcgtcca ggttctcttc
      121 caaatctggg accaccgtcc aagcgggttt cgatccacgg ttaaatacta gctatacccg
      181 tatttagtcc acggcaatag atcatcaagc acagggagaa cggtcatgaa gttcccggtt
      241 atggccttgg tcatcgcgtc tattgtgacg ctcgtcacgc cccacaacgt ggcgaattac
      301 aacaacaccg tgagcggcgc gcaaaccgca tcggcagaat ctgccagcgt tgcgttcaat
      361 ttaaatgcga ccggcgatct gcccggcatg ctgagcgtca cactcaaaca cgaaggcggc
      421 aacgtcaacg gcggaacctg gaccctgacg gtcctgccgc caaacgccga tgcaacttcc
      481 agcgagagcg gcacactgag cggaagtttt agcggcggca ctctgacgct cgatgcaaac
      541 ggcatcgcta cggccgccaa ctccatacaa ctcaccgtaa cgagcggcgc aggacagttt
      601 gcgtcgatca caagcggcag cggcacgctg aacctgtcag cggacgcaga aaactcaacc
      661 aagctcggtg gtccgttagc cctgagtttc tgaagcaaca acccagagag ttacaccacg
      721 aagttttaga aagtccaaac cagatccccg cgcttcaccc ccgacagcgc attcaccgac
      781 aggagtcgaa tcatgtttcc ctgcgcgagc aaaacgcgaa cgaaccttac tatcaacctg
      841 cagcatttca tcaccttact gctggcttac tgtttactga ttcagacgat cgcgccgccc
      901 gcactcgcaa cggcgcggcc cggcttctcg ttcgcgtggt tgaacaatgg tgtcgcctcc
      961 ctaacgtcgg tttttaagaa acccaattca gcgcaacctg cggcggcggc tgctgcggtg
     1021 ccggtcaaac agtcgactga agagttcggc gttgtgctga cgcaactcag caccgcgttc
     1081 tccggtcacg ccggcatcga gcatcaccaa ccgttacgca aggtcgttgt ttcggcaaac
     1141 agcccgagcg gcatgccgct caacttcgag tcgctcgacg aggacggcac gcaccgacct
     1201 tattcaaacg ttgccggact gacgggcgcg aaaaagatcg cgaccgcacg cgacgacggg
     1261 acgggcatga gtatcggcgg tttcgttccc ggtgagttgt tcagcggaac gggcgttccc
     1321 ggtgtgatcg cgcgcgtcgc tgctgacggc gccaccgttc agaatccgtg ggtgacgctt
     1381 ccgggcgaga ccggatcgga agcaggactg tctatcgatc gcaccggtgt gtttggcggt
     1441 gacctgatcg cggtaacgac caccggcgga gtttggcgaa tcacttcagc aggcgttgcg
     1501 acacgcgttg ccgatctcgg cacgccgctc gaaggcgtca cgacagttcc gaacgacgta
     1561 ccaaactatg gtccatgggc aggcaagatc ctcgcgggcg cgaaaacgca gaacgccatc
     1621 tacgcgatcg acgcacaagg cgctttcacg agcactgaca tcgggatctc tccgcaagac
     1681 attcgcataa tccccgcaca cgaaaacttc tacggcgtcg atgcggcgag cagcaaaatc
     1741 tggggcgcgc ctgacgacgc gtttgccggc atcatcggcg acgtcctgat cgcgcaaggc
     1801 tcgccgggtg ttttgctgcg cgcgagctgg aacggaacgg aaatcgagct cggcgagatc
     1861 gcggaagttc cgagttggaa acagatcacg ttctcgccag cggcgctgtc tgaaattgca
     1921 ggcgtcaaac agttctacga caagatcgcc gtcgtgcgtc atgcgccgga actcaacagc
     1981 ggacgtgtcg aaggcgcgct ctggcaactg ctgccagaaa acctcgtact cgacggcaca
     2041 gacgtgatca cgtctgacct gctcgt
//
LOCUS       DASWTX010001413         2152 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_432034, whole genome shotgun sequence.
ACCESSION   DASWTX010001413 DASWTX010000000
VERSION     DASWTX010001413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2152
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_432034"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..567
                     /locus_tag="VGD38_21500"
     CDS             <1..567
                     /locus_tag="VGD38_21500"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY0730676.1"
                     /translation="DLISDGKVRHFGLSEAGVQTIRRAHAVQPVAALQSEYSLWTRGP
                     EAEVLPALEELGIGFVPFSPLGRGFLTGKIDEGTTFSTSDMRNRLPRFTPEARKANQA
                     LIDLLQSIGERKDATPAQIALAWLLAQKPWIVPIPGTTKLSRLEENIGAASVELTSQD
                     LSEIESAASKITVQGERYPESMERMTGR"
     gene            complement(593..964)
                     /locus_tag="VGD38_21505"
     CDS             complement(593..964)
                     /locus_tag="VGD38_21505"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0730677.1"
                     /translation="MTKLTIVLVDDSPLIRDYLNTTLTRIHGCAVVGMAADGIEAVKV
                     IRELRPHVVVLDITMPHRNGIDVLREIRKEDPNMVIVMFTADPSVVLEEICLKEGANY
                     YLNKSEVIELVGICKELFAAI"
     gene            complement(1107..1742)
                     /locus_tag="VGD38_21510"
     CDS             complement(1107..1742)
                     /locus_tag="VGD38_21510"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY0730678.1"
                     /translation="MTRPTILIADDHKMFAQGLAGLLEDEFDLVGSVENGQALIDEAL
                     RLQPDLIIVDISMPVLNGLDAVRRLSQNNTGSKVVFLTMHADTRLLREAFQCGGVGYV
                     LKQSAGEELLFALRQVMNGQPYISPSIEKEMKAEALTASEEKQHFNLTPRQREVLQLL
                     CSGYTMKEIANQLNISTRTAETYKYQIMEGLGVETTAELIQYAVKIGLCGT"
     gene            complement(1739..>2152)
                     /locus_tag="VGD38_21515"
     CDS             complement(1739..>2152)
                     /locus_tag="VGD38_21515"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY0730679.1"
                     /translation="GVLEHLGLVKALRSHVTELSNEEQIDVRFTTDVTTDPVPPEISV
                     CIYRVALEALRNVSAHSGADSAHVTLSETNGWLVLEVSDSGKGFDVDKVGHGTGLGLA
                     SSEERVKFLHGSLEIRSVAHYGTRLTARVPLTNQR"
BASE COUNT          493 a          621 c          561 g          477 t
ORIGIN      
        1 gacctgatta gcgatggaaa ggtcaggcac tttggacttt ccgaagcagg cgtgcaaacg
       61 atccgccgcg cgcacgcagt gcaaccagtc gcggcgttgc aaagtgaata ctcgctttgg
      121 accagaggcc cggaagccga agtgttgccg gcgctggaag aactcggtat cgggtttgtt
      181 ccgttcagtc cgctcggcag gggttttctc acgggaaaga tcgacgaagg cacgacgttc
      241 agcacttccg acatgcgcaa ccggctgccg cgtttcacac cggaggctcg caaagccaat
      301 caagcgctga tcgatctttt gcaatccatc ggcgaacgca aagacgcgac acccgctcag
      361 atcgcgctcg cgtggctgct cgcgcaaaag ccgtggatcg tgccgatccc cggcacaaca
      421 aaactcagtc gcttggaaga gaacatcggc gccgcgagtg tcgaactcac gtcacaagat
      481 ttaagtgaga tcgaaagcgc cgcctcaaag atcacggtcc agggcgagcg ctacccggaa
      541 agcatggaac gaatgaccgg ccgctaaaca ctgcacgcga tcggagggcg ttctaaatcg
      601 cagcaaacag ctctttgcag atgccgacga gctcgatcac ctccgacttg ttcaaataat
      661 aattggctcc ttccttgaga catatttctt caaggaccac cgacggatcc gccgtgaaca
      721 ttacgatcac catgttcgga tcttctttgc gtatctcgcg caacacgtcg atcccgttgc
      781 ggtgcggcat cgtgatgtcc aacacgacca cgtgcggacg caactcacgg atgaccttta
      841 cagcttcaat gccgtcggca gccataccga caacggcgca accatggatc ctggtcaacg
      901 tcgtgttcaa gtaatctcga atcagcggcg aatcatcgac cagcactatc gtcaatttcg
      961 tcaaactcgc tactcctttg cgtaagccga aagctatagg gagtttcgcg agtgccgttg
     1021 taatgccgca atcggggaaa gcccgattta cttgtcagac tttgaacgtt ctcgttgtcg
     1081 ttgtttgggc gacagcttga aaggagctaa gtgccgcaaa gaccaatctt gaccgcgtat
     1141 tgaataagct cggcagtggt ctcgacgccg agtccctcca ttatctggta cttgtaggtc
     1201 tccgcagtgc gcgtggagat gttcaactgg tttgcgatct ctttcatcgt gtagccggaa
     1261 cacagcagtt gcagcacttc acgttggcgt ggcgtgaggt tgaagtgttg tttttcttcc
     1321 gatgctgtta gcgcttctgc cttcatttct ttctcaatcg acggcgagat gtaaggctgt
     1381 ccattcatca cttgccgcaa cgcgaagagt aattcctcac cggccgattg cttcaacacg
     1441 tatccgactc cgccacactg aaacgcctcg cgcaacagac gtgtatccgc gtgcatcgtg
     1501 aggaaaacga ccttcgaacc ggtgttgttt tggctgagcc tgcgcacagc gtcgagaccg
     1561 ttcaaaaccg gcattgaaat atcgacgatg atcaaatcgg gttgtaagcg cagagcttcg
     1621 tcaatcaacg cctgtccgtt ttccacggac ccgacgaggt caaactcatc ctccagcaac
     1681 cctgccaatc cctgggcaaa catcttgtga tcgtcggcaa ttaaaattgt cggtcgtgtc
     1741 atcgttggtt tgttaacgga acgcgcgctg tcaaacgcgt gccgtagtgc gcaacagatc
     1801 gaatctccag cgaaccgtgc aggaatttga cgcgctcttc cgagctcgcc aaacccaacc
     1861 cggttccatg tccgactttg tcgacgtcga accccttgcc tgaatcagac acttcgagca
     1921 ccagccagcc gttcgtttcg ctgagtgtaa cgtgagccga gtcggcgccc gagtgtgcgg
     1981 agacgtttcg caacgcttcg agagccacgc gataaatgca aaccgaaatc tccggcggca
     2041 ccggatcggt cgtcacgtca gtagtaaacc tgacgtcaat ctgttcttca ttgctcagct
     2101 ctgtcacatg cgaacgcaat gctttaacga gaccgaggtg ctcgagcact cc
//
LOCUS       DASWTX010001414         2216 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_432052, whole genome shotgun sequence.
ACCESSION   DASWTX010001414 DASWTX010000000
VERSION     DASWTX010001414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2216
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_432052"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..357
                     /locus_tag="VGD38_21520"
     CDS             <1..357
                     /locus_tag="VGD38_21520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730680.1"
                     /translation="NLISDATQAMTSPDGILVSGNHSVVTGPAGRMQMLKAAQFYLRA
                     GSGSGSGGNASQKPCMKTGCSSQVCSDEEVMTTCEFKPEYECYKKAACERQKNGECGF
                     TQTPELLACLKRARRQ"
     gene            515..1528
                     /locus_tag="VGD38_21525"
     CDS             515..1528
                     /locus_tag="VGD38_21525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730681.1"
                     /translation="MNTISLMIVVVYALTAPRWTLQTSGVTVRLRGVSAVSQQVAWAS
                     GAGSTVLRTTDGGKTWQKLNVTSDALDFRDIDAIDDKTAYALSIGNGPASRIYKTTDA
                     GATWTMQFKSEDEKEFLDAMSFWDANNGIVFGDSIDGQFYILMTSNGGQTWSRVSTAR
                     LPPALQGEGAFAASGTNIALFGKTHAWIGTGAGAKARVLRTTDHGRSWQVSDTPLAAG
                     QSAGIFSIAFRDEKHGIVVGGDYRKESEAVDNLAVTNDGGVTWKLLKGLSGFRSVVAY
                     VPGMKTPALVALGPSGGDYSLDDGQTWKPIEGRGFDTFSFIPRKATGWGAGAEGALGK
                     LVF"
     gene            1647..2144
                     /locus_tag="VGD38_21530"
     CDS             1647..2144
                     /locus_tag="VGD38_21530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730682.1"
                     /translation="MGNLPRPFVTFAVVASLLLSAVSVAAQGQTNDWSKVAALSSGSN
                     LSVKLKSGKTVNGTLSSVTDSTISLTAKNAPVDIKRDDVRSVHEVVKKSSATKAALIG
                     TGVGAGAGAAAGAIGDSNNDDGFEKLDSAATAVMAVAGAGVGALVGYFIGRSGNKRVL
                     VYESK"
BASE COUNT          516 a          601 c          679 g          420 t
ORIGIN      
        1 aacctgataa gcgacgcgac ccaggcgatg acttcgcctg atggaattct cgtcagcggc
       61 aatcattcgg tcgtcaccgg accggccgga cgaatgcaga tgttgaaagc ggcgcagttt
      121 tacttgcgtg ctggaagtgg aagcggaagc ggcgggaatg cttcgcagaa accatgcatg
      181 aagacgggct gctcgagcca ggtttgttcg gacgaagaag tgatgacgac gtgtgaattc
      241 aaacccgagt atgagtgtta caagaaggcg gcctgcgagc ggcagaaaaa tggagagtgc
      301 ggattcacgc agacgcctga actgctggcg tgtctgaaac gcgcgagacg gcagtaagac
      361 aagtgacact aatacttctg aatacagcac accgttgttg ctactaacgc cgaaggcgtt
      421 cgctaacttc agccctgggt tgctgcaacc ctgggacaac tcaacacagg cgttacaact
      481 ctgaaagagt tgacgagaac cggtaagcca aacgatgaac acgattagcc tgatgatagt
      541 ggtggtgtat gcgctgacag cgccgcgctg gacgttgcag acgagtggag tcactgtgcg
      601 tttgcgcggc gtgagtgcgg tcagtcaaca ggtcgcgtgg gccagcggcg cgggatcgac
      661 ggtgctgcgg acgactgacg gcggtaagac gtggcagaag ttgaacgtca cgagcgacgc
      721 gctcgacttt cgcgacatcg acgcgatcga cgacaagact gcttacgcgc tcagtatcgg
      781 caacggtcca gcgtcacgca tttacaaaac tacagacgca ggggcgacgt ggaccatgca
      841 attcaagagc gaggatgaaa aagagtttct cgacgcgatg tcgttctggg acgcgaacaa
      901 cggcatcgtt ttcggcgact cgatcgacgg gcagttctac atcttgatga ccagcaacgg
      961 cggtcaaacg tggtcgcgtg tgtctaccgc acgcttgccg cctgcgttgc aaggcgaagg
     1021 cgcgtttgcg gcgagtggga ccaacatcgc gctcttcggc aaaacgcacg cgtggatcgg
     1081 aacaggcgcg ggggcgaaag cgcgcgtcct gcgcaccaca gatcatggcc ggtcgtggca
     1141 ggtctcggac acgccgctcg ccgccggaca gtccgccggg atcttctcga ttgctttccg
     1201 cgacgagaag catggcattg tcgtcggcgg cgactaccgc aaagaatcag aagccgtcga
     1261 taatctcgcg gtcacaaatg acggcggcgt cacgtggaaa ctcctcaaag gtctttcggg
     1321 ttttcgttct gtcgtggctt acgtgccggg gatgaaaact ccggcgctcg tcgcgctcgg
     1381 tccatcaggc ggcgactact cgctcgacga cgggcaaacg tggaaaccga tcgaagggcg
     1441 cggtttcgac acctttagtt tcatccctcg caaagccacc ggctggggcg ccggcgcaga
     1501 aggcgcgtta ggcaaactcg tcttctgaga caccgttttg agttcaagct ttagcttgtc
     1561 ggaaggcggc agcctaaagg ctgaactctg aactttaaga agaagctgtt aacacacgca
     1621 aactcaacct caaaggagac cttaccatgg gaaacttacc ccgaccgttc gtcaccttcg
     1681 cagtggttgc atcgctgctg ctttccgcag tcagcgttgc ggctcaaggg cagacaaacg
     1741 attggtccaa ggtcgccgcg ctgtcgtccg gcagcaatct ttcggtaaaa ctaaaaagtg
     1801 gcaagaccgt caacggaaca ctcagctccg tgaccgacag cacaatctcg ctgaccgcga
     1861 agaacgcacc cgtcgacata aaacgcgacg acgtgcgctc ggtccacgag gtggtcaaga
     1921 agtcctcggc aaccaaagcg gcgctgatcg gaactggcgt gggagccggc gccggagcgg
     1981 cagccggtgc aatcggcgat tcaaacaatg acgacgggtt tgaaaaactc gacagcgccg
     2041 cgaccgccgt gatggcagtc gcaggcgctg gagtgggagc actcgtcggt tacttcatcg
     2101 ggcgaagcgg caataaacga gtgctcgtct acgagtcgaa gtaaaacgtt attcggtcgt
     2161 cttcgacttc aaagcggcta attctttttc gagcttgtcg atctgattct gtatcc
//
LOCUS       DASWTX010001415         1853 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_432068, whole genome shotgun sequence.
ACCESSION   DASWTX010001415 DASWTX010000000
VERSION     DASWTX010001415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1853
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_432068"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..760)
                     /locus_tag="VGD38_21535"
     CDS             complement(<1..760)
                     /locus_tag="VGD38_21535"
                     /inference="COORDINATES: protein motif:HMM:NF025086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4159 domain-containing protein"
                     /protein_id="HEY0730683.1"
                     /translation="MRRGFHKYGRSLRFIAAALTILFALILNGPAQLPIRPLRPPTRP
                     TTRPVPSARPVATTGEFTFVRIVYDSPHSPYNFGFGGAWRVDFPEADQHFMSGIREWV
                     GTNLRLSRGPLQLRPTDEKLFDYPLAYIVEPGHMELTDEDAAALREYLLRGGFLFLDD
                     FHGEVEWQRARRQIKKILPEYEVKDLPTSHPIFHSYFDLEGVVQVPGWAALIHGVTYE
                     RDGVVPHYMGVEDKNGRLLIFMTRNCDLGDAWEWI"
     gene            complement(769..>1853)
                     /locus_tag="VGD38_21540"
     CDS             complement(769..>1853)
                     /locus_tag="VGD38_21540"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0730684.1"
                     /translation="ILAFCFAQAPTASGQAGRVPQQKEASPQATPSLKRPDRKEEPRE
                     QTDDVVTIETDLTNVLFTAVDKNKRFITTINKEDIRILEDGVPQEIFTFQRETDRPLS
                     LAILVDVSASQQVTLEDEKEAAKQFVNAVIHNPKDDVAVVSFSGEATVEQELTNNLPN
                     VQKALERIEIVLPPGYVGPGIVINSTSSSTNETVDRRLGTTAIWDAIWVVSEDLFAGV
                     QSGKRRGIILITDGVDTSSRVQNDEALKRAIAADVAIYAIGIGDEENFDGIEKSTLRK
                     LAERSGGRTYFPKNTADLRAAFSQIEQELRSQYLVAYSPSNKKRDGSMRKVEIELLNP
                     ELRKQKLQLNYRRGYFAKTAATKAAR"
BASE COUNT          382 a          506 c          506 g          459 t
ORIGIN      
        1 tgatccattc ccacgcgtcg ccgaggtcgc agttgcgggt catgaatatc agcagcctgc
       61 cattcttgtc ttcgaccccc atgtaatgcg gtacaacgcc atccctctcg taggtaacgc
      121 cgtgaataag tgccgcccaa ccggggactt gtacaacgcc ttctaaatca aaataactgt
      181 ggaagattgg atgagaagtt ggcaggtctt tgacctcgta ttcaggcagg attttcttta
      241 tttgtctgcg ggcacgttgc cactccacct cgccgtggaa gtcgtcgaga aacaaaaacc
      301 ctccacgcaa aagatactct cgcaacgccg ctgcatcctc atccgtcaac tccatgtgtc
      361 ccggctcgac aatgtacgca agcgggtagt cgaaaagttt ctcgtcagtc ggacgcagtt
      421 gcagcggacc acgggaaaga cgcaggttcg tgccgaccca ctcgcggatg ccggacatga
      481 aatgctggtc tgcttcgggg aaatcaactc tccacgcgcc tccaaacccg aagttgtatg
      541 gcgagtgggg cgagtcgtaa acgatcctga cgaacgtgaa ctctccggtg gttgcgacag
      601 gcctggcgga tggaacaggt ctcgtggttg gtctcgtggg cggccgcagc ggacgaattg
      661 gaagttgagc tggtccgttt aatatcagtg cgaacaggat ggtcagagcc gcggcgatga
      721 atcgcaatga ccgcccgtac ttgtgaaaac ctcgacgcat ttcgacttct acctcgcggc
      781 ctttgtagcc gctgttttag caaagtatcc gcgacgataa ttcagttgta acttttgttt
      841 gcgcaattca gggttcagca gctcgatctc tactttgcgc attgagccgt cgcgtttttt
      901 gttcgagggc gaataggcga ctagatactg agagcgaagc tcctgttcga tttgtgagaa
      961 cgccgcgcgt aagtcagcgg tgtttttcgg aaagtaagtc cggcctcctg agcgctccgc
     1021 gagtttacgc aacgtgcttt tctcgatgcc gtcgaagttt tcctcgtcgc cgatgccgat
     1081 agcgtagatt gcgacatcgg ccgcgatcgc gcgtttgaga gcttcgtcgt tttggacgcg
     1141 gctgctcgtg tctactccat ccgtgatcag gataatgccg cgccgtttac cactctggac
     1201 gccggcaaac aaatcttcac ttacaaccca gatcgcatcc caaatagcgg tggtgcccag
     1261 gcggcgatcg acagtttcat tcgtggagct actggtgctg tttatgacga tacccggccc
     1321 gacatacccc ggcggcagca cgatctcgat ccgttccagc gccttctgca cgttgggtaa
     1381 attgttcgtg agttcctgtt cgaccgtcgc ctcgccgctg aaggaaacaa ccgccacgtc
     1441 atcttttgga ttgtgaataa cggcattcac aaactgcttt gccgcttctt tctcgtcctc
     1501 cagtgtcact tgttgcgaag cactaacatc gacgagaatc gcgagcgaaa gtggccggtc
     1561 ggtctcacgt tgaaacgtaa agatctcctg aggcacgccg tcttcaagaa tgcgaatgtc
     1621 ttccttgttg atagtggtaa tgaaccgttt gtttttgtcg acggccgtga agagaacgtt
     1681 cgtgaggtcg gtttcgatgg ttactacgtc gtcagtctgt tcccgcggct cttcttttcg
     1741 gtcgggacgt ttcagactcg gcgttgcttg tggtgaagcc tctttttgct gaggcaccct
     1801 accggcctga cccgaagcag tcggagcctg agcgaagcag aacgcgagta tca
//
LOCUS       DASWTX010001416         2549 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_193033, whole genome shotgun sequence.
ACCESSION   DASWTX010001416 DASWTX010000000
VERSION     DASWTX010001416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2549
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193033"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..845)
                     /locus_tag="VGD38_21545"
     CDS             complement(<1..845)
                     /locus_tag="VGD38_21545"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEY0730685.1"
                     /translation="MPLSSGPTVINCSNCHSTMPSELRFCRNCGFRLGTSYGASGQVG
                     TVAAATGSAPLVAKKRRKMSGMTWVFVGLLVFFVGAAAFTAIINPIRQREGAPVIKLS
                     VNKAYVGVNGFDTTENGVTFDSVNAPGSPADKAGLVGGDVITKFDGQDVRDEDQMDEL
                     MTRTPIGKTVDVEYIRDGEKKTTKLTPVSQEEFRRLSREFEKRPEGRGVFGYEDGDSE
                     RVQVPGTNIYGVKLNTILRSRPADMAGITEGDIVSEFDGVPIRTTDEFLMRVKRALPY
                     STVKVV"
     gene            1121..1246
                     /locus_tag="VGD38_21550"
     CDS             1121..1246
                     /locus_tag="VGD38_21550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730686.1"
                     /translation="MKTTQALTTPSVKIQMPDGQIVKIPFPTIAEIKDHNAAAGG"
     gene            1293..1904
                     /locus_tag="VGD38_21555"
     CDS             1293..1904
                     /locus_tag="VGD38_21555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730687.1"
                     /translation="MPSPFMIDDLGDRIATVWSELRPATRGLVERALQAAATGNQTSR
                     NIQYDARADLELSRFLAALDDRAAEKTAALDAEKGGKLKSVADTLASVLQEQTESAEV
                     FAQLVRRAESQKDYKRIDTLADALTSRFPPSEICELARSEDVIVRELANEALARCPVS
                     VLVALLNDPIDSETARYALRRQVAEYGSEEARRLLAALDQEEM"
     gene            complement(1889..>2549)
                     /gene="ispH"
                     /locus_tag="VGD38_21560"
     CDS             complement(1889..>2549)
                     /gene="ispH"
                     /locus_tag="VGD38_21560"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0015968 - stringent response [Evidence
                     IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HEY0730688.1"
                     /translation="IAVIRAHGVTPQVQRDLEARAAQVIDATCPFVTRVQHLAERAAR
                     QGRDVVVAGNPDHPEMIGVVGYAPDNTYVVRDAAEVASLPALRSPLVVSQTTIKLQTF
                     LEVAEAVREKADTEPQVVNTICSATRDRQDAARALAGQVDAFYVIGGRHSSNSVKLLA
                     VCQEQCQKSFLIETPAEINPDDLKGVEKVGVTAGASTPNWLIDQVVQKLRHLAENHIS
                     S"
BASE COUNT          542 a          763 c          706 g          538 t
ORIGIN      
        1 accactttca ccgtgctgta aggcagcgcg cgtttgacgc gcatcagaaa ctcgtcggtc
       61 gtgcgaatcg gaacgccgtc aaactcgctc actatgtcgc cctctgtgat tccggccatg
      121 tcagccggac ggctgcgcag aatcgtgttg agcttcacgc cgtagatgtt tgttcccgga
      181 acctgcacgc gttccgagtc gccatcttcg taaccaaaca cgccgcggcc ttcgggacgt
      241 ttttcaaact ctctcgacaa ccggcgaaac tcttcctgcg aaacgggcgt gagcttcgtc
      301 gtcttctttt caccatcacg gatgtattca acgtctacgg tcttgccgat cggcgtccgc
      361 gtcatcaact cgtccatctg atcttcatca cgaacgtcct gcccgtcgaa cttcgtgatg
      421 acgtcgccgc cgacgagacc agccttgtcc gccggactac cgggcgcgtt aacagaatcg
      481 aacgtgacgc cgttttcggt cgtgtcgaaa ccgttgactc cgacatacgc tttgttcacc
      541 gacagcttga tcacgggcgc gccttcccgt tgccgaatcg gattgatgat cgccgtgaac
      601 gccgcggcgc cgacaaagaa aaccagcaag ccgacaaaca cccacgtcat gccgctcatc
      661 ttgcgccgct ttttcgcaac cagcggcgca cttccagtag ccgcggcgac agttccaacc
      721 tggccactgg cgccatagct cgtcccgagg cgaaatccgc aattacggca gaaccgtaac
      781 tccgacggca tcgtcgagtg acagtttgag cagttgatca ccgtagggcc cgatgataat
      841 ggcatttcag gagtttccga cataaccaac gttatccttt gagtcttggg tgaaggatat
      901 acgacgagtt tctatacgcc aaataaactt tgccagttgc agcgactttg cggccgaccg
      961 ctttaactgg cacactgggt gctcgcattc caggcgcagg gaggaacaag cacacgtgga
     1021 aataaccaaa gcgctcgccg cactacaacc cctatatggg aaggacaacg tagaaatcat
     1081 cacaaccgat gggcggcgag tcaggggaac ggttcggagt atgaaaacca ctcaggcact
     1141 gacgaccccc agcgtcaaga ttcaaatgcc cgacggccag atcgtcaaaa ttcccttccc
     1201 gaccatcgct gaaatcaaag accacaacgc agccgcaggc ggctaacgca tatttcgcgt
     1261 tttgccggtc ttggcgtata ttacgccgtt ctatgccctc tcctttcatg atcgacgacc
     1321 tcggcgatcg cattgcaacg gtctggtcag aactgcgtcc cgccacacgc ggtctggtcg
     1381 aacgcgcgct gcaggcagca gcaaccggca accagacatc gcgaaacatc cagtacgacg
     1441 ctcgtgcgga tctcgaattg agccgcttcc tcgccgcgct cgacgatcgt gccgcggaaa
     1501 agacagcggc gctggatgca gagaagggcg gtaagctcaa gtcggttgcc gacacgctcg
     1561 cgagtgtgtt gcaggagcag accgaatcag ccgaagtgtt tgcgcaactc gtccggcgcg
     1621 cggagtcgca gaaggattac aagcgtatcg atacgctagc tgatgcgctc acgtcccgtt
     1681 ttccgccgag cgaaatctgt gagttggcgc gttctgaaga cgtgattgtc cgtgaattgg
     1741 cgaatgaggc tttggcgcgc tgtccggttt cggtgttggt tgcgctactg aacgatccga
     1801 ttgactcgga aaccgctcgt tacgcgttgc gtcgacaagt tgcggagtat ggctctgaag
     1861 aagcgcgacg gctcctggcc gcgctcgatc aggaagagat gtgattttcg gccagatgcc
     1921 ggagcttttg cacgacttga tcgatcaacc agtttggcgt tgaagcaccg gcagtaacac
     1981 ccaccttttc cacgcccttc aaatcatccg gattaatctc ggctggagtt tcgatcagga
     2041 agctcttctg acactgttcc tggcacacgg ccaacagctt gacgctgttt gaagaatgtc
     2101 ttccgccgat gacgtaaaag gcatccacct gtccggcaag tgcgcgcgcg gcgtcctgtc
     2161 gatcgcgagt cgcggagcag atcgtgttga ccacttgcgg ctcggtgtcg gctttttcgc
     2221 ggacggcttc cgcgacttct aaaaaggttt gcagcttgat tgtcgtttgt gaaacgacga
     2281 gcggtgaacg aagcgccggc agcgatgcga cttccgctgc atcgcgcacg acgtaagtat
     2341 tgtccggagc ataaccaacc acaccgatca tttcgggatg atccggattt cccgccacga
     2401 cgacgtcacg tccctgccgc gcggcgcgtt ctgccagatg ctgcacgcga gtgacaaacg
     2461 ggcaagtggc gtcgataacc tgcgcggctc gcgcttcaag gtcgcgttga acttgcggcg
     2521 tgacgccatg ggcgcgaatg acggcgatc
//
LOCUS       DASWTX010001417         2937 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_149526, whole genome shotgun sequence.
ACCESSION   DASWTX010001417 DASWTX010000000
VERSION     DASWTX010001417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2937)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2937)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2937
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149526"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2351)
                     /gene="gyrA"
                     /locus_tag="VGD38_21565"
     CDS             complement(<1..2351)
                     /gene="gyrA"
                     /locus_tag="VGD38_21565"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF004043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006259 - DNA metabolic process [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HEY0730689.1"
                     /translation="METTSDRNHINIEDEMRRSYLDYAMSVIIGRALPDIRDGLKPVH
                     RRVLWAMHELGNTYNKAYKKSARIVGDVIGKYHPHGDMPVYDTIVRLAQDFSMRYPLI
                     DGQGNFGSVDGDAAAAMRYTEIRMARLANELLADIEKETVVFQPNYDESLSEPTVLPA
                     RVPNLLINGSDGIAVGMATKIPPHNLTEVVEATLALLKDPELNVEDLTKIVTGPDFPT
                     GGFIYGREEIRKSYVEGRGVLQLRARAGIDRIGRGQQERDAIVITEIPFQVNKARLLE
                     RIAELVNEKKLEGISDLRDESDRSGMRIVVELKRDAVPQVVLNKLYKLTPMQSSFGVI
                     NLAIVNGQPRVLNLKQMLEAFIEFRREVVRKRTEYELRKAKARAHILEGLTKAIDALD
                     YIVTLIRNSRSVDEARQWLQGQLKTTSEVKAWKGVPSDVQLKTYLARMEKTMASLAFS
                     EIQAQAILDLQLRRLSALERQKIIDEYEGVIKLIAELEEILSNERSLRRVIAKELEEV
                     KKEFGDERRTEIVDEGVELSIEDLIADEDVAITVTNSGYIKRTPITTYSRQGRGGKGR
                     FGAAAKNGDFVEHLFIASTHAYLMIFTDDGMVYKIKVHEVPDAAASARGKAVVNLINI
                     PSDRKLAGVVPVREFSEGRYVVMVTRKGVIKKTSLADFQNIRANGIIAINIDEGDQLL
                     DVILTDGTKRIFIATHNGLAIRFDEKNARPMGRATRGTRGIELRQDDFVVSVCAVSAE
                     DKERMLSVSEQGYGKQTPITTYRLQARGGKGVINMKTTDKTGKV"
     gene            2577..>2937
                     /locus_tag="VGD38_21570"
     CDS             2577..>2937
                     /locus_tag="VGD38_21570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730690.1"
                     /translation="MDRDDQIDKRDAVWRGVHVDAAHGKSKATDKGPGFEIGVAFIGK
                     RPPASYETQPWKRYEISLGVDEELASVDEGRAPVSAEQQEHTRHRMAVDMLVEMIDPS
                     GAVVQSEQTVTEDISAQA"
BASE COUNT          577 a          845 c          848 g          667 t
ORIGIN      
        1 accttgccgg tcttgtcagt cgtcttcatg ttgatgacgc ccttgccgcc gcgcgcctgg
       61 agacgatagg tcgtgatcgg cgtctgcttg ccgtagccct gttcggacac tgacagcatc
      121 cgttccttgt cttcagccga aaccgcacaa accgaaacca cgaaatcgtc ctgacgcaac
      181 tcgatgccac gcgtgccgcg cgtcgcacgg cccatcggac gcgcgttctt ttcgtcgaaa
      241 cgaatcgcga gaccgttgtg cgtggcgatg aagatgcgct tggtgccgtc ggtgaggatg
      301 acgtcgagta actggtcgcc ttcgtcgatg ttgatcgcaa tgatgccgtt cgcgcgaatg
      361 ttctgaaagt ccgcgagcga cgtcttcttg atcacgccct tgcgcgtgac catcaccacg
      421 taacgtcctt cggaaaactc acgcaccgga accacgcccg cgagtttgcg atcggacgga
      481 atgttgatga gattcacaac tgccttaccg cgcgctgaag cagccgcgtc gggcacttcg
      541 tgaaccttga tcttgtagac catgccgtcg tcagtgaaga tcatcaggta agcatgggtc
      601 gaagcgatga agagatgttc gacgaaatca ccattcttcg cagccgcgcc gaaacgtcct
      661 ttgccgccgc gtccctgacg tgaatacgtc gtgatcggcg tgcgcttgat gtagccgctg
      721 ttcgtgacgg tgattgcgac atcctcatca gcaatcagat cctcgatcga aagctcaacg
      781 ccttcatcga cgatctccgt gcgacgctcg tcgccaaact cttttttgac ctcttccagt
      841 tccttcgcga tcacgcggcg cagcgagcgc tcattgctga gaatctcttc gagctcggcg
      901 atcagcttga tgacgccctc gtactcgtcg atgatctttt gccgttcgag tgccgacaac
      961 cggcgcaact gcaaatcgag aatcgcctgc gcctgaatct cggaaaacgc gaggctggcc
     1021 atcgtttttt ccatccgcgc gaggtatgtc ttcagctgca cgtctgacgg aacacctttc
     1081 cacgccttca cctcactcgt ggttttcagt tgtccctgca accattgccg cgcttcgtcg
     1141 actgaacgcg agttgcgaat cagcgtgacg atgtagtcga gcgcgtcgat ggctttcgtg
     1201 agaccttcga gaatgtgcgc tcgcgctttc gctttgcgta gctcgtattc ggtgcgtttg
     1261 cgcacgacct cgcggcgaaa ctcgataaac gcttcgagca tctgcttgag gttgagcacg
     1321 cgcggctggc cgttgacgat cgcgagattg atcacgccga acgacgattg catcggcgtg
     1381 agcttgtaaa gcttgttgag gaccacttgc ggcactgcgt cgcgtttcaa ctccacgacg
     1441 atgcgcatac cgctgcgatc cgactcgtcg cgcagatcgg agatgccttc aagcttcttc
     1501 tcgttaacga gttcggcgat gcgttcgagc aaacgcgctt tgtttacctg gaacggtatt
     1561 tcagtgatca cgatcgcgtc gcgttcctgc tggccgcgtc cgatgcgatc gatgccggcg
     1621 cgcgcgcgca actgcaaaac gccgcgccct tcgacgtacg acttcctgat ctcttcgcgc
     1681 ccgtaaatga atccgccggt cgggaaatcg ggaccggtga cgatcttcgt caggtcttcg
     1741 acgttcagtt ccggatcttt cagcagcgcg agtgtcgctt cgacgacctc ggtcaggttg
     1801 tgtggcggga tcttcgtcgc catgccgacc gcgatgccgt cagaaccgtt gatgagcagg
     1861 ttcggcacgc gggccggtag aactgtcggc tcgcttagcg actcgtcgta gtttggttga
     1921 aaaacaactg tctctttttc gatgtcggcg agaagttcgt tggcgagacg cgccatgcga
     1981 atctcggtgt aacgcatcgc ggcagcagca tcgccatcga ctgaaccgaa gtttccctga
     2041 ccgtcgatga gcggataacg catcgagaag tcctgggcca gacgcacgat cgtgtcgtac
     2101 acaggcatgt cgccgtgcgg gtgatactta ccgatcacat cgccaacgat gcgcgcgctt
     2161 ttcttgtaag ccttgttgta cgtgttgccg agctcgtgca tcgcccaaag cacgcgccgg
     2221 tgcacgggct tgaggccatc gcggatgtcg ggcagggcgc ggccgatgat caccgacatg
     2281 gcgtagtcga gatacgatcg ccgcatctcg tcttcgatat ttatgtgatt gcggtcagaa
     2341 gttgtttcca tctaataccc tttccagtac aatcccgcga gtctttttgg acgctcgatt
     2401 tttgaggtag aagaacaggg atggttcatt attaaagagc ccatatttta acgtttttcc
     2461 agcactttgg cgagtactcc caccatggcc gaagagagga aatcaaagcg gattcgcgag
     2521 cggctcgcac tgcggttacc cgtgcgaatt caaggccggg aaacacctga tttcgagtgg
     2581 accgagatga ccagattgac aaacgtgacg ccgtttggcg cggcgttcac gttgacgcgg
     2641 cccacggaaa gagcaaggcc actgacaagg gaccgggatt tgaaatcggc gtcgcgttca
     2701 tcggcaagcg cccgccggcg agttatgaaa ctcaaccgtg gaagcggtat gagatctcgc
     2761 ttggcgtcga cgaagagctc gcatctgttg acgagggtcg cgctccggtt tccgcggagc
     2821 agcaggaaca cacgcggcat cgcatggccg tcgacatgct cgtggagatg atcgatccga
     2881 gtggcgcggt ggtgcagagt gaacagacgg tcactgagga catcagtgcg caagcgg
//
LOCUS       DASWTX010001418         2744 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_193088, whole genome shotgun sequence.
ACCESSION   DASWTX010001418 DASWTX010000000
VERSION     DASWTX010001418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2744
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193088"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1303)
                     /locus_tag="VGD38_21575"
     CDS             complement(<1..1303)
                     /locus_tag="VGD38_21575"
                     /inference="COORDINATES: protein motif:HMM:NF014215.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY0730691.1"
                     /translation="MSSAKKQIMIKVILKAVLLMTFTIAAGLNVSAQQSKPALTGEWV
                     GNSEPAGRSEFLRLSLTENAGEMLRPLKVKLTLVQLEGSRVRIELSSLKLVMTGTLTG
                     DEIEGEAEVPGTKARFHLVRTVKVAPETLARYVGAYRFRNGEYLMIDSFADTPDTLFV
                     TDMKSGEARAVFPRSETQFIGGPALYVASPARQTLTFRSTGVHVVDLDQKGRETGALA
                     TRVPIAQEEVTFKNGNVTLAGTLLLPPSKGSHPAVVFTHGGGAQLREVMWGLGYLYAA
                     RGFAVLSYDKRGVGKSTGNWREASFVDLADDAVMAAKFLQTRTDVAANQIGFWGLSQG
                     GWIAPLAASRFPDAAFAIALSGGGLSPAETELFDSEYELTKAGYTASEVKNALAFQKL
                     KNQIIVSMDKWDEYAKARDTAKDQKWFRHQGIDIWGPDKPDH"
     gene            1616..2443
                     /locus_tag="VGD38_21580"
     CDS             1616..2443
                     /locus_tag="VGD38_21580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730692.1"
                     /translation="MLDWLTRRGKNQTMPEYSGAREIPSRGVPSRRSEQEAHEAFSAR
                     CDSIRRWLCEPPRRLQDERQYFVELLTENSQSVVTIERTKGSHCMPVFSSPFRAADYV
                     RTLLASGPPVTYLSSSPLELLAMFGNLRQVGIDEITLDRCPRCDSFCAIYTSSLTTTD
                     DVVNCWSIFKSMELARMEQFLKYAQAAARAEQFYTARDVLLEAAAHVSVEDPRLHLAM
                     GQVAVALYDSELLREAKSFLRFFKLKSWEGRLDQIAHSRWSDYDFVLEDSGLSAPLQ"
BASE COUNT          587 a          773 c          733 g          651 t
ORIGIN      
        1 gatgatcggg tttatccggc ccccagatat cgatgccctg atggcgaaac catttctggt
       61 ccttggctgt gtctcgggct ttggcgtact cgtcccattt gtccatcgaa acaataatct
      121 ggtttttcaa cttttgaaac gccagcgcat tcttcacttc actcgcggtg tagccggctt
      181 ttgttaactc gtactcgcta tcgaataact ccgtttcggc tggtgacagt ccgccgcccg
      241 acagcgcgat cgcaaaagcg gcgtccggaa aacgtgaagc ggcgagcgga gcaatccacc
      301 cgccctggct aagcccccag aagccgatct gattcgcggc gacgtccgtc cgtgtttgca
      361 gaaactttgc tgccatcacg gcgtcgtccg ccaggtctac aaagctcgcc tcgcgccagt
      421 tgcccgtcga cttgccgacg cctcgcttgt cataactaag gacggcaaac ccgcgtgcgg
      481 cgtaaagata tccgagaccc cacatgactt cgcgcaactg cgcgccgccg ccatgtgtaa
      541 acacgaccgc gggatggctt cctttcgacg gtgggagcag cagcgtaccg gcgagcgtga
      601 cgttaccgtt tttgaaagtg acttcttcct gggcgatggg aactctcgtc gcaagcgctc
      661 cggtctcgcg acccttctgg tccaagtcaa ctacgtgaac gccagtgctg cgaaaggtaa
      721 gtgtttgccg cgccggcgac gcgacataca aagctggtcc accgatgaat tgagtctccg
      781 atcgcgggaa aaccgcgcgt gcttcgccgg atttcatgtc agttacaaac agcgtgtcag
      841 gagtgtcggc aaagctatcg atcatcagat actcgccgtt gcggaagcga tacgcgccga
      901 catagcgcgc caaagtttcc ggcgcgacct tcacggtgcg caccaagtga aagcgggctt
      961 tggttcccgg gacctcggcc tctccttcga tttcatcgcc ggtgagagtc cccgtcatga
     1021 cgagtttgag cgagctcaac tcgatcctca cgcgagaacc ttcgagttgg accaacgtca
     1081 gtttcacttt gagcggtctc agcatctcgc ctgcattttc agtcaggctc agacgcaaaa
     1141 actcggacct gccggccggc tcgctgttac ccacccactc gccggtcaag gcaggtttgg
     1201 attgctgagc ggaaacattc aaccccgccg cgatggtgaa agtcatcaaa aggacagctt
     1261 tgaggataac tttgatcatg atctgcttct ttgcactact caccgtgcgg atgattatgc
     1321 gtgggcgcta aggaaatcgg caacgtcagg agctggacga taactagcca agattcatgt
     1381 aggttccata tagaagcatg acttcagtac aaactgcgcg cctgcaattc gcatttgaca
     1441 gattagcgcc attcaagtgt ccactgagat cgattgattc taagttagcg ccctgcatat
     1501 ctgctcttac tacgccgacg taattacccg cagcaactgt tctaaagcgt ggtttagcgc
     1561 tacagttatg agtcgccaag cagaccttgc cattctcaca cggaggtaac cgcacatgct
     1621 cgactggctc acacggcgcg gtaaaaatca gacgatgccc gaatactccg gggcccgtga
     1681 aataccgtcc agaggtgttc catcccgccg ttcagaacag gaagcacacg aagcgttcag
     1741 tgctcgatgt gactcaattc gacgctggtt gtgcgagccg ccgaggcgtc tgcaggatga
     1801 acgtcagtat tttgtggagc tcctcaccga aaactcgcaa agcgtagtga cgatcgagcg
     1861 aacgaaaggg tcgcactgta tgccggtatt cagcagccct tttcgcgcgg cggattacgt
     1921 ccgaactctc cttgcgtccg gcccgcccgt tacctatctc tcttcaagcc cgctcgagct
     1981 cctcgcgatg ttcggaaatt taaggcaagt tggaatcgac gaaattacat tggatcgttg
     2041 tccgaggtgc gactcgtttt gcgctatcta cacttcgtcg ttgacgacga ccgatgatgt
     2101 tgtcaattgc tggtccattt ttaagtcgat ggagctggcg cgcatggagc agtttctgaa
     2161 atatgcgcag gcagccgcac gagcagagca gttttacact gcgcgtgatg tgctacttga
     2221 ggctgctgca cacgtaagcg ttgaagaccc gcggttgcac ctggcgatgg gccaagtcgc
     2281 cgtggcactt tacgactccg aattgcttcg tgaagcaaaa tcttttctcc ggttcttcaa
     2341 gctcaaatca tgggagggca gactcgatca gattgctcac tcacgttggt ccgattacga
     2401 ttttgttctt gaggactcag gattatcggc gcctcttcag tgaagggtgc aatacgcgcc
     2461 ctccggcctg aatccttcct atgccgtgcc ttttgcgggt gctgatgact tgaggcaaag
     2521 catatcggca ttcaccttgc atttggtcca cccgggttcc cgaaagttgt attcataacg
     2581 aacatgggag caggaccatg caaaagattt tgcgtcaaaa tgggctttcg atagttcttg
     2641 ctctactctt cctgcttttc ctcgtcggcc aggctgtggc cggcatgtat gcgtataacg
     2701 aagaacagtt ggagcacggt cagccggcgg tggagttttt tgac
//
LOCUS       DASWTX010001419         5254 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_149572, whole genome shotgun sequence.
ACCESSION   DASWTX010001419 DASWTX010000000
VERSION     DASWTX010001419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5254)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5254)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5254
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149572"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..626)
                     /locus_tag="VGD38_21585"
     CDS             complement(<1..626)
                     /locus_tag="VGD38_21585"
                     /inference="COORDINATES: protein motif:HMM:NF024151.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY0730693.1"
                     /translation="MRGIFRGGIIRPLALFVVFSLFAAAIVLAQSPQPPAQPPAQPAS
                     GPGGKQYVHTGVTKNRYGKGGTEYWIFEPADPKPATAPLVVFLHGWGGMNPMYYGAWI
                     DHLVKRGNIVMYPRYQASLLTPLTEFTPNTLVAIKDGIERLQTEPGHIKPDLNKFAAV
                     GHSMGGLLAASVAALASETGLPQVRAVMSVEPGITEPPISFPLPDLKKL"
     gene            854..2029
                     /locus_tag="VGD38_21590"
     CDS             854..2029
                     /locus_tag="VGD38_21590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730694.1"
                     /translation="MAYALICAAATSAVAQTSLAELHKLLQEKAAFEETDFAALQRGE
                     TVVRPAPTQDKGEVAVSGLVTLRASADEFLRSYRESLTRKSNGAVMEVGTFGAVPAPA
                     DLESLTLEADDIEDLKACVVGACEIKLSAAMIQRFGREVNWQATDYAHQATQLFKTML
                     LEYVKDYRSRGDAALIEYHDKQHEIRLANEHQALTRASGYLSDVFGKSAASEMQPLEE
                     LLVWSKIKFGLKPVIAINHVTIYKRDRELGPQILAVSKQIYANHYFNSSLGLTGFVTV
                     AGPTSYLVYENRSRADGLEGPFGKLKRGIVQKKALEGLKGILEHSKLTMEAPMMARES
                     TVASANASDSWSRRLFGGIRPLLWFLIISALIALLALRNYEGKANRAAVKQLKPEQR"
     gene            2045..2581
                     /locus_tag="VGD38_21595"
     CDS             2045..2581
                     /locus_tag="VGD38_21595"
                     /inference="COORDINATES: protein motif:HMM:NF012309.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006801 - superoxide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase family protein"
                     /protein_id="HEY0730695.1"
                     /translation="MRKQFIMWLTAVAMAASFLTYATAQHAQHNVTVELKNGKGESVG
                     TATLTPIANDKGVRIKLDLKNLPPGSHAIHFHQAAKCEGPTFESAGAHFNPDSKMHGL
                     KNPQGPHAGDMNNFTVKRNGTANQTVTSQLVNLGSGSNSLHANGGTSLVVHASADDHK
                     TDPSGNSGDRIACGVISK"
     gene            2611..4137
                     /gene="xylB"
                     /locus_tag="VGD38_21600"
     CDS             2611..4137
                     /gene="xylB"
                     /locus_tag="VGD38_21600"
                     /EC_number="2.7.1.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR01312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004856 - xylulokinase activity [Evidence
                     IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0005997 - xylulose metabolic process
                     [Evidence IEA];
                     GO_process: GO:0042732 - D-xylose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xylulokinase"
                     /protein_id="HEY0730696.1"
                     /translation="MHLIGIDVGTGGSRAVLIDTAGKIVASATVEHKPFVSIQTGWAE
                     QDPRDWWRASAAAIRAALTKAAIPAEEIKAVGLSGQMHGAVLLDESDEVLRPAIIWCD
                     QRSGEQCRRLTENVGSGRLIELTCNPALTGFTLPKVLWVRDHEPETWQRVRSVLLPKD
                     YVRFRLTGDKATDVADGSGTLLLNVAARRWSTEMLDAAEISSNILPRVYESQEITGSL
                     TAKAAEETGLLAGTPVIAGAGDQAAGAVGLGIVRPGTISATIGTSGVVFAATNTPALD
                     PKGRVHTFCHAIPGRWHVMGVTQGAGLSLRWFRDQFGLISESSGDPYDSLTAEAARVP
                     PGADGLLWAPYLMGERTPHLDPDARAALVGLTASHTRAHIVRAILEGVAFSLKDSFEI
                     LKELNVPCETIRLGGGGARSELWRQIQADVYGHEVETAEAEEGAAYGVAVLAGVAAGA
                     WPSVDAACDAVIRTNISVQPDAHALEIFHRQYRKYVALYPTLRSILNPEGTNATKNLH
                     "
     gene            4115..5113
                     /locus_tag="VGD38_21605"
     CDS             4115..5113
                     /locus_tag="VGD38_21605"
                     /inference="COORDINATES: protein motif:HMM:NF024799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding protein"
                     /protein_id="HEY0730697.1"
                     /translation="MRPKTFIRSIVCLSVFTLLLTSCQPGGPTNSSAPGGAAGGKHKL
                     AFVTNNASDFWTIARKGTEKAAQDVAGIEVEFRIPADGTAAEQQRVIDDLLAKGIHGI
                     AISPVDPVNQTQMLNRTASQALVVTQDSDAPDSNRVCYIGTDNVAAGRQAGELMKEAL
                     PQGGKIMVFVGVLDAANAQQRYQGLKEALAGSNIQIIDVRTDNTDRVRAKSNAADTLV
                     NNPDIAGMVGLWSYNGPAILSAVKEANKTDKVKIIAFDEEDPTLEGIKDGSIYATVVQ
                     QPYEFGYRSMELMAKYLNGDKSVVPASKQIFVPTLAVKKADVDAFQKKINQLRGRS"
     gene            5144..>5254
                     /locus_tag="VGD38_21610"
     CDS             5144..>5254
                     /locus_tag="VGD38_21610"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY0730698.1"
                     /translation="MEGVSKRFPGVVALDNVSLSVGAGEIVALIGENGAGK"
BASE COUNT         1194 a         1566 c         1522 g          972 t
ORIGIN      
        1 agcttcttca agtcgggcaa cggaaagcta atcggcggct ccgtgattcc gggttcaact
       61 gacatcacag ccctaacttg cggcaaacca gtttcactcg ccaacgccgc gacgctcgcc
      121 gccaacagtc cacccatcga atgaccgaca gcggcaaact tattaaggtc cggcttgatg
      181 tgtcccggtt ccgtttgcaa acgctcgatg ccgtccttga tcgccaccag cgtgtttggc
      241 gtgaactccg tcagcggcgt caacagactc gcctggtaac gcggatacat cacgatgttg
      301 ccacgcttca cgaggtgatc gatccacgcg ccgtagtaca tcggattcat cccgccccag
      361 ccgtgcagaa acacaaccag aggcgcggtc gcaggcttcg gatcggcggg ttcgaaaatc
      421 cagtactccg ttccaccctt gccgtaacga ttcttcgtca cacccgtgtg cacgtactgt
      481 ttcccgccgg gcccggacgc tggctgtgct gggggttgcg ccggcggctg cgggctctgc
      541 gccaacacaa ttgccgccgc gaagagcgaa aaaaccacaa acaatgccag cggcctgatt
      601 attccgccgc gaaaaattcc tcgcattcca ttgcctccct gaattccttt gacgcacggg
      661 agcacgcgaa agttaactga atttctgaaa caacttttca atttacgatt tagtctaaaa
      721 cagaagtaac gcgaacattc ccccaccgcg ttgactgtgg cacaggcggt gccaatagat
      781 tgtcgcagtc ccccattagc gtaacaaaag agttcacatg ttaacccgcg cgcaccattt
      841 tccggtactc gttgtggcct atgcactaat ctgcgccgcc gcaacttcag ccgtagcgca
      901 aacctcgctg gccgaacttc acaaactgct ccaggaaaaa gccgcttttg aggaaactga
      961 cttcgccgcg ctgcaacgtg gcgaaaccgt tgtccggccc gcgcccacgc aggacaaggg
     1021 cgaagtcgca gtctcgggcc tggtgacact gcgtgcgagc gccgacgaat ttttgcgctc
     1081 ctaccgcgaa agtctgacgc gcaagagcaa cggcgcggtg atggaggtcg gcacgtttgg
     1141 cgcggtgccc gcaccggccg acctcgagag tctaacgctc gaagccgacg acatcgaaga
     1201 cttgaaagcc tgtgtcgtcg gcgcctgcga gatcaaactt tccgccgcga tgattcagcg
     1261 cttcggccgc gaagttaact ggcaagcgac ggactacgcg caccaagcca cgcagctctt
     1321 caaaacgatg ctgctcgagt acgtgaaaga ctatcgctcg cgcggcgacg cagcactgat
     1381 cgagtatcac gacaaacagc acgaaatccg gttggccaac gagcaccagg cgctcacgcg
     1441 cgcttcagga tatctcagcg acgtgttcgg caaatcggcg gcttcggaaa tgcagccgct
     1501 cgaagagctg ctcgtctggt ccaagatcaa gtttggactg aaacccgtca tagccatcaa
     1561 ccacgtcacg atctacaaac gcgaccgcga gctcggacca cagatcctcg ccgtctcgaa
     1621 acagatttac gccaatcatt atttcaattc atcgctcgga ctgacaggat tcgtgaccgt
     1681 cgctggtcca acgtcgtatc tcgtctacga gaaccgctcg cgagccgatg gtctcgaagg
     1741 accgttcggc aagctcaaac gcggcatcgt tcagaagaaa gcgctcgagg gtttgaaagg
     1801 catcctcgaa cactcgaaac tgacgatgga agcgccgatg atggcccgtg aaagcacggt
     1861 tgcatcggca aacgcgtcag acagttggag ccggcgttta ttcggcggca ttcgtccgct
     1921 tttatggttt ctgattattt cggcattgat cgcgttgttg gcgctgcgca actacgaagg
     1981 caaagccaac cgcgcggcag tgaaacaact gaaaccggag caaaggtaac aaggagggat
     2041 ttttatgaga aagcaattca tcatgtggtt aacggctgtc gcaatggcag cttctttttt
     2101 gacttacgcg acagcacagc atgctcagca caacgtgacc gttgagttga agaatggcaa
     2161 gggcgagagc gtcggcaccg caacattgac gccgatcgca aacgacaaag gcgtgcgaat
     2221 caagctcgac ctgaaaaatc tgcctccggg atcgcacgcg atccacttcc atcaagcggc
     2281 gaagtgcgaa ggcccgactt tcgaatccgc aggcgcccac ttcaaccccg actccaagat
     2341 gcacggcttg aaaaatccgc aaggcccgca tgccggcgac atgaacaatt tcacggtgaa
     2401 gcggaacggc accgccaacc agacggtgac gagtcagctc gtgaacttag gttccgggag
     2461 taattcgctg cacgcgaacg gcggcacatc actcgtagtt cacgcttcag cggacgacca
     2521 caagaccgac ccgtccggaa attccggcga tcgtatcgct tgcggcgtga tctcgaagta
     2581 aatctgtgtt aagaaggtgc ccacaaatcg atgcacctga tcgggataga tgtgggcacc
     2641 ggtggctcgc gcgccgtgct gatcgacacg gcaggtaaga tcgtcgcttc agccactgtc
     2701 gaacacaaac ctttcgtttc aatacaaacc gggtgggccg aacaggaccc gcgcgattgg
     2761 tggcgtgcct ctgccgccgc gattcgcgct gccctcacaa aagccgcgat tcccgcggaa
     2821 gaaatcaaag cagtcgggct gtcgggacag atgcacggcg cggtgttgct cgacgagagc
     2881 gacgaagtgc tgcggcccgc gatcatctgg tgcgatcagc ggagcggcga acaatgccgc
     2941 cggttaactg agaacgtcgg cagcggccgg ttgatcgagt taacgtgcaa ccccgcgctc
     3001 acgggcttca cgttgccgaa agtcttgtgg gtacgcgatc acgaacccga gacgtggcaa
     3061 cgcgtgcgct cagttctact gccaaaagat tatgtccggt tccggctgac gggcgacaaa
     3121 gctacagacg tcgccgatgg ttcaggcacg ttgctgctga acgtcgccgc cagacgctgg
     3181 tctaccgaaa tgctcgacgc cgcggagatc tcgtcgaaca ttctgccgcg cgtttacgaa
     3241 tcacaagaga tcaccggttc gctcacggcg aaagccgcgg aggaaaccgg actgctcgcg
     3301 ggcacgcccg taatcgccgg cgctggagat caggccgcgg gcgctgtcgg actcggcatc
     3361 gtccgcccgg gaacgatcag cgccacgatc ggaacatcgg gcgtcgtctt cgccgcgacc
     3421 aacacgcccg cgctcgatcc gaagggacgt gttcatactt tttgccacgc gattcccgga
     3481 cgctggcacg tgatgggcgt cacgcagggc gcgggtctga gcctgcgttg gttccgcgat
     3541 caattcggct taatatctga atccagcggc gatccatacg acagtcttac agccgaagca
     3601 gcgcgagttc cgcccggtgc ggacggcttg ctctgggcgc cgtacctgat gggcgaacgc
     3661 acgccgcatc tcgatccgga cgcgcgcgcg gccctcgtcg ggttgaccgc gagtcacacg
     3721 cgggcacaca tcgtacgcgc gatactcgaa ggcgtggctt tcagtctcaa agattcgttt
     3781 gagattctca aagagttgaa cgtgccgtgc gagacgattc gtcttggcgg cggcggtgcg
     3841 cggtccgaac tgtggcggca gatccaggcg gatgtttacg gacacgaagt cgagacggcc
     3901 gaagcagaag aaggcgccgc ttacggcgtc gccgtgctcg ctggtgttgc ggcaggcgcg
     3961 tggcccagtg tcgacgctgc ctgtgacgca gtgatccgga caaacattag cgtccaaccc
     4021 gacgcgcacg cactagaaat ttttcatcga caatatcgaa agtatgtagc actctacccg
     4081 acgttacgtt caatacttaa ccctgaggga acaaatgcga ccaaaaacct tcattagatc
     4141 gattgtgtgt ctaagcgtgt tcacgttgct gttgaccagt tgtcagccag gcggtccgac
     4201 aaacagcagt gcgcccggcg gcgcggcagg cggcaaacac aagctcgcct tcgtcactaa
     4261 caacgcgtcc gatttttgga ccatcgcgcg caaagggacc gagaaagccg cgcaggatgt
     4321 tgcgggtatc gaagtcgagt tccggattcc cgcggacggc actgccgccg agcaacagcg
     4381 cgtgatcgac gatctgctcg cgaaaggtat tcacggtatc gcgatcagcc cggtcgatcc
     4441 ggtgaaccaa acgcagatgc tgaatcggac cgccagccag gcactcgtcg tcacacagga
     4501 cagcgacgcg cccgacagca atcgcgtctg ttacatcggc acggacaacg ttgcggccgg
     4561 ccgccaggcg ggcgaactga tgaaagaggc gttgccgcag ggcgggaaga tcatggtttt
     4621 tgtcggcgtg ctcgacgcag ccaacgcgca gcaacggtat cagggtttga aagaggcact
     4681 cgccggttcg aacattcaga tcatcgacgt gcgcaccgac aacaccgatc gcgttcgcgc
     4741 gaagtcaaac gccgccgaca cgctcgtgaa caacccggac atcgcgggca tggttggtct
     4801 gtggtcctac aacggtcccg cgattctcag cgccgtcaaa gaggcgaaca aaaccgacaa
     4861 ggtgaagatc atcgcgtttg acgaagaaga tccgacgctc gaaggcatta aagacggttc
     4921 gatctacgcc accgtcgttc aacagccgta tgaattcggt tatcgctcga tggagctgat
     4981 ggcgaagtat ttgaacggcg acaagtcggt cgttccggcg agcaaacaga tcttcgtgcc
     5041 gacgctggcg gtgaagaaag cagacgtcga cgcttttcag aagaagatca accagctccg
     5101 cggacgcagc taatccgtga cagtgaacac gcccattctc gagatggagg gagtcagcaa
     5161 gcgattcccc ggcgtcgtcg cgcttgataa cgtcagcttg agcgtcggcg ccggcgagat
     5221 cgtggcgttg attggcgaga acggcgcggg caag
//
LOCUS       DASWTX010001420         2599 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_432378, whole genome shotgun sequence.
ACCESSION   DASWTX010001420 DASWTX010000000
VERSION     DASWTX010001420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2599)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2599)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2599
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_432378"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..193
                     /locus_tag="VGD38_21615"
     CDS             <1..193
                     /locus_tag="VGD38_21615"
                     /inference="COORDINATES: protein motif:HMM:NF013118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730699.1"
                     /translation="EILLELGLRAVRVMSDNPAKIQALRQAGLEVVERVPLAVEPHDF
                     FAGYLKTKKEKMGHLVSVA"
     gene            203..1828
                     /locus_tag="VGD38_21620"
     CDS             203..1828
                     /locus_tag="VGD38_21620"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY0730700.1"
                     /translation="MGFKDVHLANTSDLNAGEMKEFSAGETRILLARVGDRFHAVSAS
                     CPHYGGNLAEGALCGTHVVCPLHHAVFNVVNGDLEEPPAFDALVSYEVRVEGERVLVR
                     VPDEASDRRVVALAKRDVTADSRQFVIVGAGAAGYAAAQTLREEGFRGHIVMITREDR
                     APYDRPNLSKDYLHGHADPEWMPLRPQEFFAEHDIQLLFNQEVTRVDAQAKTIVFEGG
                     ETMDYDALLVATGGAPVRLNIPGSDLKNVCVLRSFADADSIIETAGRSRRAVVVGASF
                     IGMEAAYSLRERGLDVTVVAPSQEPFEVTLGNEVGAVFRREHERHGVRFKLGSIVYRF
                     EGSHNVEAVTVDSGESIETDMVVVGVGVRPVTNFLEGVELDQAGGVVVDSHLRAADGL
                     YAAGDIVSFVDVRTGERLRIEHWRTAQQQGRVAARNMLGRELPFEGVPFFWTQQFDLT
                     LRYVGHAASWDQIVYQGDVSSGDFLAFYVKANRVLAVAGMNRDRELAAVEALMKLDRL
                     PTGEQLKFGGVNVVDLLHAPSQVRELEPMMKSV"
     gene            1878..2591
                     /locus_tag="VGD38_21625"
     CDS             1878..2591
                     /locus_tag="VGD38_21625"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEY0730701.1"
                     /translation="MRVAPSSTAALFGASRHQPRVQIFSGLNPDEMTRITAYARSLRK
                     ARGEFIYMPGDRPDHVYILRQGRVKLSVLAESGKEIAIDIIQPGEIFGEFALVDDAPR
                     SNMAQALDDILVWVFAKNDFTHLIASQPKLALSYIRLVGDRRRRMEKKLSDITSKAVS
                     ARVCELLHEIATSSADGETGNTDYLVPLTHHDVASLIGAARQTTTTVLNDLERRNIIE
                     LGRGWVRVKCLKDLQTYTG"
BASE COUNT          489 a          690 c          840 g          580 t
ORIGIN      
        1 ggaaattctg ctcgaactcg gattgcgcgc ggtgcgcgtg atgtccgaca acccggcgaa
       61 gattcaggcg ctgcggcaag cgggtctcga agtcgtggaa cgcgtgccgc tcgcagtgga
      121 gccgcatgat ttcttcgccg gttatctgaa aactaagaag gagaagatgg gccacctcgt
      181 cagtgtggcc tgataactag caatgggttt caaagacgtt cacctcgcga acacgtcaga
      241 cctcaacgcc ggggagatga aagaattttc ggcgggcgag acgcgcatcc tgctggcgcg
      301 cgttggcgat cggtttcacg cagtcagtgc aagctgtcct cactatggcg gaaacctcgc
      361 tgaaggcgcg ctgtgcggca cgcacgtcgt ttgtccgctg catcatgctg ttttcaacgt
      421 ggtgaacggc gatctggaag agccgcctgc gttcgatgcg ctcgtgagtt atgaagtgcg
      481 tgttgaaggc gagcgtgtgc tggtccgcgt gccggacgag gcctcggacc ggcgcgtggt
      541 cgcgttggcg aaacgtgacg tcactgctga ctcgcggcag tttgtgattg tcggcgccgg
      601 cgccgctggt tatgctgcgg cacagacact gcgcgaagaa ggttttcgtg gtcacatcgt
      661 gatgatcacg cgcgaagacc gcgcgcctta cgaccggccg aacttgagca aagattacct
      721 gcacggtcac gcagatccgg agtggatgcc tctgcgtccg caggagtttt ttgcggagca
      781 cgacatacag ctcttattta atcaggaagt gacgcgcgtc gatgcgcaag cgaagacgat
      841 agttttcgag gggggcgaaa cgatggacta cgacgcgctg ctcgtcgcta cgggtggcgc
      901 gccggtccgt ctcaatatcc cgggttctga tttgaagaac gtttgcgtgc tgcgcagttt
      961 tgctgacgcc gattcgatca ttgaaaccgc tgggcgttcg cgccgcgctg ttgttgtggg
     1021 cgcgagtttc atcgggatgg aagcggcgta cagtctgcgt gaacgcgggc tggacgtgac
     1081 agttgtggcg ccttcgcagg agccttttga agtcacgctc ggcaacgaag tcggcgcggt
     1141 gttccggcgc gagcatgagc gtcatggagt tcgcttcaag ctcggttcga tcgtgtatcg
     1201 gtttgagggc agtcacaacg ttgaagcggt gacggttgac agtggcgaga gtatcgagac
     1261 ggacatggtc gtggtcggag ttggtgttcg tcccgtcacg aattttcttg aaggcgtgga
     1321 gttggaccag gctggtggcg tcgtggttga ttcgcatttg cgtgcggcgg acgggcttta
     1381 cgcggcgggc gacattgtca gcttcgtcga tgttcgtact ggtgaacgcc tgcgtatcga
     1441 gcactggcgt accgcacagc agcaggggcg cgttgcggcg cgcaacatgt tggggcgtga
     1501 gcttccgttt gaaggtgttc cctttttctg gacgcagcag tttgatctaa cgctgcgtta
     1561 tgtgggccac gctgcatcgt gggaccagat cgtttaccag ggtgacgttt cgtcgggcga
     1621 ctttctggcg ttctacgtga aagcgaatcg tgtgctggct gttgcgggta tgaatcgcga
     1681 tcgcgagctt gctgctgttg aagcgttgat gaagctcgat cgcctgccga cgggcgaaca
     1741 actgaaattc ggcggcgtta acgttgtgga tctgcttcac gcgccgtctc aagtccgcga
     1801 acttgaacca atgatgaaga gtgtttaagc ctcccgtgcc ctggtttgct tagaccagat
     1861 taggagtgga aagtcttatg agggtcgcac cgtcctccac ggcggcgttg tttggcgctt
     1921 ctcgtcatca gccgcgcgtg caaatcttct ccggcctcaa ccccgacgag atgacacgca
     1981 tcaccgcgta cgcccgcagt ctgcgcaagg cgcgtggtga attcatctac atgcccggcg
     2041 atcgtcccga ccacgtttac atcctgcggc agggaagagt gaaactgtcg gtgcttgccg
     2101 aatcaggcaa ggagatcgcg atagacatca ttcagcctgg ggagatcttc ggcgagtttg
     2161 cgctggttga cgatgcgccg cgcagcaaca tggcccaggc gttggacgac atactcgtgt
     2221 gggtctttgc taagaacgat ttcacgcacc tgattgcgtc gcagccgaag ctggcgttga
     2281 gttacatccg tctggtgggc gatcggcggc ggcgcatgga aaagaaactc tcggacatca
     2341 cctcgaaggc tgtttcggcg cgcgtgtgcg aactgttgca cgagatcgcg acgagctccg
     2401 cggacggtga aaccggtaac acggattatc tcgtcccgct aacgcatcac gacgttgcaa
     2461 gtctgatcgg cgctgcgcgc cagaccacaa ccaccgtcct caacgatctc gaacgccgca
     2521 acatcatcga actcggccgc ggctgggtcc gtgttaagtg tctcaaagat ctccaaacct
     2581 acaccggcta attctttcg
//
LOCUS       DASWTX010001421         4579 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_214905, whole genome shotgun sequence.
ACCESSION   DASWTX010001421 DASWTX010000000
VERSION     DASWTX010001421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4579
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214905"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(107..192)
                     /locus_tag="VGD38_21630"
     tRNA            complement(107..192)
                     /locus_tag="VGD38_21630"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(157..159),aa:Leu,seq:taa)
     gene            complement(521..3445)
                     /gene="uvrA"
                     /locus_tag="VGD38_21635"
     CDS             complement(521..3445)
                     /gene="uvrA"
                     /locus_tag="VGD38_21635"
                     /inference="COORDINATES: protein motif:HMM:TIGR00630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEY0730702.1"
                     /translation="MAVSVQRVAVHSEAADTDFTGFVRVRGAREHNLKNINLDLPRDA
                     LVVFTGVSGSGKSSLAFGTLYAEAQRRYLESVSPYARRLFHQMAVPDVDQIDGLPPAV
                     ALQQQRGSPTTRSSVGSVTTLSNLLRMLYSRAGDYPPGQTILYAESFSPNTAEGACPT
                     CHGIGRIYEVTEQSMVPDDSLTIRERAIAAWPTAWGGQTQRDILTTLGYDVDQIDGLP
                     PAVALQQQRGSPTTRSSVGSVTTLSNLLRMLYSRAGEYPPGQTILYAESFSPNTAEGA
                     CPTCHGLGRIYEVTEQSMVPDDSLTIRERAIAAWPTAWGGQNQRDILTTLGYDVDLPW
                     RELPKKDRDWILFTDEQPRVPVYPGYDRDEVRRALKRKEEPNYMGTFTSARRHVLHTF
                     ANTHSALMKKRVAQFMVGTECPTCHGKRLRPESLSVKFAGLDIAEISRLPLKRLATVI
                     RPYAHGTAQGFGKLNTDHPEKAIVTQRICEDLAARLTVLLDLGLGYLSLERSTPTLSP
                     GELQRLRLATQVHSNLFGVVYVLDEPSAGLHPADTEALLAALDQLKAAGNSLFVVEHE
                     LDVIRHADWIVDVGPEAGEHGGEILYSGPTAGLERVKESQTRRHLFGDVSLPFREPRT
                     PRSWLKLKGVTRNNLHDLDVEFPLSVFTTVTGVSGSGKSSLVSQVLVELVAEQLGHHL
                     QPDEDEGETLESTAVATLGGQITEGIAAIKRLVVVDQKPIGRTPRSNLATYTGLFDYV
                     RKTFAETKAARARRYDAGRFSFNVAKGRCENCEGEGWVMVELLFLPSVYAPCPVCHGA
                     RYNAKTLEIKYRDKSIADVLQMTVDTAWKFFADEPHVHRSLGVLREVGLGYIRLGQSA
                     TELSGGEAQRIKLATELQRIQRGNTLYILDEPTTGLHPADVEKLMVQLDGLVEAGNTV
                     ILVEHDMRVVAGSDWVIDIGPGAGDEGGRVVVAGTPADVAKSAKSRTAPYLVNSGNLV
                     IQ"
     gene            complement(3579..4280)
                     /locus_tag="VGD38_21640"
     CDS             complement(3579..4280)
                     /locus_tag="VGD38_21640"
                     /inference="COORDINATES: protein motif:HMM:NF018446.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022841 - potassium ion leak channel
                     activity [Evidence IEA];
                     GO_process: GO:0071805 - potassium ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HEY0730703.1"
                     /translation="MLRTRPNEHTHRETHGAERGLNRFEGFSDAVFAIALTLLIVEIK
                     VPGSPEGPHGYSDLARAMAEQWREHLALVLCYLVIGAYWLQHHYSGRIYAKTDHLFGA
                     INLLFLLAIVVIPYPIRVWCFHLGTHFESVASATLVVGLALTACTWMAKWFYGMPGRR
                     LMDERLAPDFLQQMTRRFGSATLIQIASVPVAFAAPRVGVAIALLCVTFFLLPQPKPR
                     YKSGEEPTETEKLNE"
     gene            complement(4325..>4579)
                     /locus_tag="VGD38_21645"
     CDS             complement(4325..>4579)
                     /locus_tag="VGD38_21645"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY0730704.1"
                     /translation="ANDTTYGLSSAVWTRDLERGNRFALRLEAGMTHVNDSPVNDLPN
                     CPFGGEKNSGLGRYNGQWSIEEFTTVHWISVQHEPVQYPF"
BASE COUNT          967 a         1317 c         1325 g          970 t
ORIGIN      
        1 gttcggtcgt aactcggaag acgttggcac actataggca cacaagacgc caaagcgagt
       61 agttagtgat cgttcaattg ctgcccgtaa ctgcttgatt ctgttgtggt gccgagggcg
      121 ggagtcgaac ccgcacgtcc tttcggacaa cggattttaa gtccgcagcg tctgccattc
      181 cgccaccccg gcatgttgtc cgtaactgta actataccaa gaatttccgt ttccctaaaa
      241 caagaatatc ttaacgtcaa aaacgtaggt gcgtggaaga tgcgtggcta ctctattaat
      301 ttttttgggt ctttcattgc tggagattga gtattgcgcc gccaggaacc caatagttag
      361 agtgaattcg cgcgacggag tttcctccct agcgcgaatt caatttccct caaattgttc
      421 gccggtgagt tgagtgcgac agcagaaacg tggacggcac ttcaggctgt cgggaaggag
      481 tcttgttcat cctaaaatcc tgacatcctg tctaaacgct tcactggatt acaagatttc
      541 cagaattaac aagataaggc gcagttcggc tcttcgctga tttcgctacg tcggccggcg
      601 ttcccgcaac caccactcgc ccgccttcat caccggcgcc cggtccgata tcgattaccc
      661 aatcgctccc ggcaaccacg cgcatatcat gttcaacgag gatcacggta tttccggctt
      721 cgacgaggcc atcgagttgg accatcagct tctccacgtc tgccgggtgc agtccggtcg
      781 ttggttcatc aaggatataa agagtgttgc cacgctgtat tcgttgcagt tcagtcgcaa
      841 gcttgattcg ctgcgcctcg ccgccggaaa gttcggtggc cgactggccg agacggatgt
      901 agccgagtcc gacctcgcgc aacacaccga gcgaacgatg aacatgcggc tcatcagcga
      961 agaatttcca ggcagtgtct accgtcattt gcaacacgtc ggcaatgctc ttatcccgat
     1021 acttgatctc gagagtcttc gcgttgtatc gcgcgccatg acagaccgga caaggcgcat
     1081 agacgctcgg cagaaacaac agctccacca tcacccagcc ttcaccttcg caattttcgc
     1141 aacggccttt cgcgacgttg aacgagaaac gtccggcatc ataacgacgc gctcgcgccg
     1201 ctttagtttc agcaaaggtc ttgcgaacgt aatcgaagag ccccgtgtaa gtagcgaggt
     1261 tagagcgtgg cgtgcgaccg attggtttct ggtccaccac gaccaaacgc tttatcgctg
     1321 ctataccctc ggttatctgg ccgccgagcg tcgccaccgc cgtgctttcg agtgtttcac
     1381 cttcgtcctc atccggctgg aggtgatggc ccagttgctc cgcgaccagt tccaccaaga
     1441 cctgactcac gaggctcgac ttgcccgagc ccgacacacc ggtcacggtg gtgaacacgc
     1501 ttaacggaaa ctcgacgtcg agatcgtgca ggttgttgcg cgtgacgcct ttcaatttca
     1561 accatgacct gggcgtgcgc ggttcacgga agggaagtga gacgtcaccg aaaagatgtc
     1621 gccgggtttg cgattctttt acgcgctcga gtcccgcggt tggtccactg taaagtattt
     1681 cgcctccgtg ctcgccagcc tctggtccaa catcgacaat ccaatcagca tgacgaatca
     1741 cgtcgagctc gtgttcgaca acgaagagcg agtttccggc agccttcaac tggtcgagcg
     1801 ccgcgaggag cgcctccgta tctgctggat gcaaacccgc ggacggttcg tcgagcacgt
     1861 aaacgacgcc aaacagattg gagtgaactt gagtagcgag tcgcaggcgt tgcaactcac
     1921 cgggcgacag cgtgggcgta ctgcgttcga gcgagagata accgagaccg agatcgagta
     1981 acacggtgag ccgtgcagcg aggtcttcgc agattcgctg cgtcacaatc gccttctcag
     2041 gatggtctgt gttcagcttt ccaaatccct gcgcagtgcc gtgagcatac gggcgtatca
     2101 cagtcgctaa acgcttgagt ggcagccgcg agatttcagc aatgtcgaga cctgcaaact
     2161 ttactgagag cgactcggga cgaaggcgtt tgccgtgaca cgtcgggcat tcggtgccca
     2221 ccataaactg ggccacgcgt tttttcatga gcgcgctgtg ggtgttagca aacgtgtgca
     2281 gcacgtgacg gcgcgcgctc gtgaacgttc ccatgtagtt cggctcttcc ttgcgcttca
     2341 gcgcgcgtcg cacttcgtct cgatcgtagc ccggatagac aggcacgcgt ggctgttcat
     2401 cggtgaagag gatccaatcg cggtccttct tcggcagttc gcgccatgga agatcgacgt
     2461 cgtagccaag tgtggttagg atgtcgcgct gattctgtcc gccccaggca gtgggccatg
     2521 cggcaatcgc gcgctcacga atcgtgagcg agtcgtcggg caccatcgac tgctcggtta
     2581 cctcgtagat tcgaccgagt ccatgacacg tcggacacgc accctccgcg gtgtttggcg
     2641 aaaacgattc ggcgtaaaga atggtttggc ccggcggata ttcgccggcg cgcgagtaca
     2701 acatccgcag gaggtttgag agcgtcgtga cgctgccgac agacgagcgc gtggtgggcg
     2761 agccgcgttg ttgctggagt gcgacggccg gcggtaaacc atcgatttga tcgacgtcgt
     2821 agccgagcgt agtcaggatg tcgcgctgag tctgtccacc ccaggcagtg ggccaggcgg
     2881 caatcgctcg ctcacgaatc gtgagcgagt cgtcgggtac catcgactgc tcggtaacct
     2941 cgtagattcg accgatccca tgacacgttg ggcacgcgcc ctcagcggtg tttggcgaaa
     3001 acgattcggc gtaaagaatt gtctggcccg gcggataatc gccggcgcgc gagtacaaca
     3061 ttcgcagcag gtttgagagc gtcgtgacgc tgccgacaga cgagcgcgtg gttggcgagc
     3121 cgcgttgttg ctggagtgcg acagccggcg gtaaaccatc gatttgatcg acgtcgggca
     3181 ccgccatctg gtgaaagaga cgcctcgcgt aaggcgaaac agattcgaga taacgtcgct
     3241 gcgcctcggc ataaagtgta ccgaatgcca acgacgactt ccccgaacca gacacgcccg
     3301 tgaacacaac cagcgcatca cgcggcaaat ccagattgat attcttgaga ttatgctccc
     3361 gcgcaccccg cacacgcaca aagcccgtga agtcggtgtc ggcggcttct gaatgaacgg
     3421 caactctctg aacgctaacg gccacaccgg gccttaagca accccagtgc cgacccgtct
     3481 atacttattt gaagcctacg gaagactaac cacggatgac acggaaaaaa tccggattta
     3541 cgatccgcgt catccgtggt tgagtttttt acaccccact actcgttcaa tttctcagtc
     3601 tcggtcggct cctctccgga cttgtagcgc ggcttgggct gaggcagcag gaagaatgtg
     3661 acgcacagca gggcgatggc cactccgacg cgcggcgccg cgaacgcgac cggaactgaa
     3721 gcgatctgga tcagcgttgc gctgccgaag cggcgcgtca tctgctggag gaaatcgggc
     3781 gcgagccgtt cgtccattag ccggcggccc ggcattccgt agaaccactt ggccatccag
     3841 gtgcaggcgg tcagggcgag gccgacaacc agggtcgccg acgcgacgga ctcgaagtgc
     3901 gtgccgaggt ggaagcacca gacgcggatt ggatagggaa tgacgacgat ggccagcagg
     3961 aacaataggt taatcgcgcc gaacaagtga tcggtcttcg cgtagatgcg gcccgaataa
     4021 tggtgttgca gccagtaggc accgattacg agatagcaga gaaccagcgc gagatgttcg
     4081 cgccactgct cggccatggc ccttgccaga tcactgtagc catgcgggcc ttcgggagat
     4141 cccgggactt tgatctcgac gatcagaagg gttagcgcga ttgcgaaaac cgcgtcgctg
     4201 aacccctcaa agcggttaag tccgcgctcg gcgccatgtg tttcccggtg ggtgtgttcg
     4261 ttaggccttg tgcgtagcat caggtgcgtc gtgtcgccga tcctcgcggc gcggattccc
     4321 ctggctagaa tggatactga accggttcgt gctgcactga gatccagtga acagtggtga
     4381 actcttctat ggaccattgt ccgttgtaac ggcccagacc gctgttcttc tcgccgccaa
     4441 acgggcagtt tggcaggtcg tttaccggcg aatcgttcac gtgagtcatt cctgcttcca
     4501 gccggagtgc gaaacgatta ccacgctcga ggtcgcgagt ccacacagca ctcgacaatc
     4561 cgtatgttgt atcgttcgc
//
LOCUS       DASWTX010001422         2511 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_149908, whole genome shotgun sequence.
ACCESSION   DASWTX010001422 DASWTX010000000
VERSION     DASWTX010001422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2511
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149908"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..306
                     /locus_tag="VGD38_21650"
     CDS             <1..306
                     /locus_tag="VGD38_21650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730705.1"
                     /translation="ITDPIERRVIHGFSPTRSGDVVLIAQPYKYLGDTITATHGSPYS
                     YDTHVPVIITGTGIVPGRYLEPASPADIAPTLSALLRITAPTNATGRVLTEAIRKGF"
     gene            complement(303..950)
                     /locus_tag="VGD38_21655"
     CDS             complement(303..950)
                     /locus_tag="VGD38_21655"
                     /inference="COORDINATES: protein motif:HMM:NF024304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEY0730706.1"
                     /translation="MTFPQTDRTKLKRLPKRGHFVRETVYAILDEGFICHVGFAVDGQ
                     PFVIPTGYARVDDKLYIHGSQASRMLRSLAGGLDACVTVTIVDGLVLARSAFHHSINY
                     RSVLVFGRATLVEDPKEKYDALVSLSEHIVRGRWADVREPNEVEMKQTTVLCLPMEEA
                     SAKVRTGPPLDDEEDYALPMWAGVVPLKLVAGEPINDPRLPAEIPVPEYAAHYKR"
     gene            1003..>2511
                     /locus_tag="VGD38_21660"
     CDS             1003..>2511
                     /locus_tag="VGD38_21660"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730707.1"
                     /translation="MRVRLPLIATCLLILALVSQTVLAQNGRAVSKSPLEEAFSRLEW
                     RSIGPAIMGGRIADVEGVPGDANVVYVASASGGLWKTTNGGVTWKPIFERQGTISIGD
                     IALAPGNPDVVWVGTGESNVRNSVSFGDGVYKSTDGGKTWQHMGLKETERISAIAINP
                     QNTDIVYIGALGHAFGPNEERGVFMTTDGGKTWNKTLYIDNQHGVADLEIDPTNPNIL
                     YAGMWSFERKPWTHRSGGENGGVYKSIDGGRTWNKLTNGLPKLMGRIGIRVAPSNPNV
                     VYVIVEAKDGTLYRSDDRGETFRMVSKQDSIVSRGFYYTTVRVNPTNENHIYAVASTL
                     FTSVDGGKTFRSITGRTHIDFHALWIDPKNPKRMWHGQDGGIGVSYDGGESWEAVYNI
                     PLGQFYQIHADNRQPFYYVMGGLQDNGSWTGPSRTREPAGIMNDDWRMVSFGDGFYVI
                     NHPDDPEQYLSESQGGEIVWTDFRTREQQSINPWGRGSGGGPAAGNKFRFNWN"
BASE COUNT          556 a          730 c          740 g          485 t
ORIGIN      
        1 atcaccgatc cgatcgagcg ccgtgtgatt cacgggtttt cacccacgcg cagcggcgac
       61 gtcgtcctga ttgctcagcc ttacaaatac ctcggcgaca cgatcaccgc gacgcacggt
      121 tcgccttact cgtacgacac ccacgtgccc gtgatcatca cgggaaccgg catcgtgccc
      181 ggacgctatc tcgagcccgc gtctccggca gacatcgcgc caacgttgtc ggcgctgcta
      241 cgcatcaccg cgcccacgaa tgccaccggc cgcgttttga ctgaagcaat caggaaggga
      301 ttctaacgtt tgtagtgtgc ggcgtactcg ggaacgggga tttccgcggg taaacgcggg
      361 tcatttatcg gttctcccgc aaccaattta agagggacaa cacccgccca catcggcaac
      421 gcgtaatcct cttcgtcgtc gagcggtgga ccagtacgaa ccttcgcgga ggcttcttcc
      481 atcggcaggc aaagcactgt cgtctgtttc atctctactt cgttcggctc gcgcacgtcg
      541 gcccaacggc cgcgcacgat gtgttctgac aacgacacca gcgcgtcgta tttctctttt
      601 ggatcttcaa ccagagtggc gcgtccaaac accagcaccg aacgataatt gattgaatga
      661 tgaaaagccg atcgcgcgag cacgagcccg tcgacgatcg tcaccgtcac acacgcatcc
      721 aaaccgcccg ccagcgagcg caacatgcgg ctcgcctggg aaccgtgaat gtaaagcttg
      781 tcgtccacgc gcgcgtagcc ggtgggaatt acgaacggct gcccgtcgac ggcaaagccg
      841 acgtgacaga tgaagccctc atccagaatt gcgtagacag tctcgcgaac gaagtggccg
      901 cgcttgggga ggcgcttaag tttggtgcga tcagtttggg gaaatgtcat aatcaggcac
      961 agagtaacac agataccacg gtcacttgtt aaggagacat tgatgcgcgt tcgactaccc
     1021 ctgatagcta cctgtctgct tattctcgct ctcgtttcgc aaaccgttct ggctcaaaac
     1081 ggaagggccg tttcgaagtc gccgctggaa gaggcgttct cgcggctcga atggcgcagc
     1141 attggaccag cgatcatggg cggacgcatc gccgacgtcg aaggcgtgcc cggcgatgcg
     1201 aatgttgttt acgtcgcgag tgcttcggga ggtttgtgga agacgacgaa cggcggcgtc
     1261 acgtggaaac cgatcttcga gcgccagggc accatctcta tcggagacat tgcgctcgcg
     1321 cccggcaacc cggacgtggt ttgggtcggc accggtgaat caaacgtacg caacagcgtc
     1381 tcgttcggcg acggtgttta caagtcgacc gacggcggca agacatggca gcacatggga
     1441 ctcaaagaga ccgagcgcat ctccgcgatc gcgatcaacc cgcagaacac ggacatcgtt
     1501 tacatcggcg cgctgggcca tgcattcgga ccaaacgaag aacgcggtgt gttcatgacc
     1561 accgacggcg gcaagacgtg gaacaagacg ctctacatcg ataaccaaca cggcgtcgcc
     1621 gatctcgaga tcgatccgac aaatccaaac attctttacg ccggcatgtg gagctttgag
     1681 cgcaagccgt ggacgcatcg aagcggcggc gagaacggcg gcgtttacaa gtcgatcgac
     1741 ggcggccgta cgtggaacaa gttaactaac ggattgccga agctgatggg ccgcatcggc
     1801 attcgcgtcg cgccaagtaa tccaaacgtc gtttatgtga ttgtcgaagc gaaagacggc
     1861 acgttgtatc gttcagacga tcgcggcgag acgttcagga tggtttcgaa gcaagacagc
     1921 attgtgtcgc gcggatttta ttacacgacc gtgcgcgtca atccgaccaa cgagaaccac
     1981 atctatgcgg ttgcgtccac gctctttact tcagtcgatg gcggcaagac gtttcgctcg
     2041 atcaccggcc gcacgcacat cgactttcac gcgctctgga tcgatccgaa aaatccgaaa
     2101 cggatgtggc acgggcagga cggcggcatc ggcgtcagtt acgacggcgg cgagtcgtgg
     2161 gaagccgttt acaacatccc gttgggccag ttttaccaga ttcatgcgga caaccggcag
     2221 ccgttctatt acgtgatggg tggtttgcag gacaacggtt cctggaccgg accgagccgc
     2281 acgcgcgagc ccgcgggcat catgaacgac gactggcgga tggtgagttt tggcgacggc
     2341 ttttacgtga tcaatcaccc ggacgatccc gagcagtatc tttcggagtc gcagggtgga
     2401 gaaatcgttt ggactgactt tcggacgcgc gagcagcagt cgatcaatcc gtggggacgc
     2461 ggcagcggcg gtggaccagc agcgggaaac aagttccgct tcaactggaa c
//
LOCUS       DASWTX010001423         2126 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_432568, whole genome shotgun sequence.
ACCESSION   DASWTX010001423 DASWTX010000000
VERSION     DASWTX010001423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_432568"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            11..>2126
                     /locus_tag="VGD38_21665"
     CDS             11..>2126
                     /locus_tag="VGD38_21665"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEY0730708.1"
                     /translation="MQPLPVGINGELYIGGDGVARGYLKRPELTAERFIPDEFSGVAG
                     ARLYRTGDLARYRADGELDFLGRIDNQVKIRGYRIELGEIEAALCAVAGVREAVVVAR
                     PDAQGEQRLVAYVVGEVAGLDQGTLRRELGVRLPDYMIPAAIVELDQLPLTANGKVDR
                     RALPEPERMRSQGSEYAAARTPVDELLCGIWAEVLGVERVGVDDNFFELGGHSLLATQ
                     VVSRVRETCGVEIALRELFEAPSVRLLAVVVEEARRVDQGVAAPPIVAVGRDRELPLS
                     FAQQRLWFLDQLEPNNPFYNIPAVVHLQGALDLRALTDAFTALVRRHASLRTSFGAPE
                     GRPQQVIAAPADFTLTIEDLSDIHAEERLAPATELAAAEAQRPFDLEAGGLLRVKLWR
                     LSDDEHVLALVMHHIVSDGWSMGVLVRELVELYDASRAGREPKLERLAVQYADFAVWQ
                     REWLSGAVLERQLSYWSKQLAGAPPVLELPTDYPRPAVQSHRGATVPFNVTAELTADL
                     KQLSQRSGVTLFMTLLAAFDVLLMHYTNQTDIVVGTNIANRNRAETENLIGFFVNNLV
                     LRTDLSGNPSVRELLDRVRNVCLGAYIHQDMPFDKLVEELRPERMLSHNPLFQVMFVL
                     QNAPRTVLEVPGLTFRSISNTRNVSRFDLLVNVFETPDGLQGSAEYSTDLFDASTVKR
                     MLDHYATLLAAVAADPDKPLQGF"
BASE COUNT          404 a          568 c          719 g          435 t
ORIGIN      
        1 caacaagcaa ttgcagcccc ttccagttgg tatcaatggt gagttgtata tcggcggcga
       61 tggagtcgcg cgcggatatc tgaagcggcc ggagttgacg gcggaacggt tcattcccga
      121 tgagttcagc ggtgtggccg gggcgcggct gtaccggacc ggggatttgg cgcgctaccg
      181 cgcggatggg gaactggatt ttctcggacg gatcgacaat caggtgaaga ttcggggcta
      241 ccggattgag ttgggtgaga tcgaagcagc gttgtgtgct gtggcgggag tgcgtgaggc
      301 agtggttgtg gcgcggccgg acgcacaggg cgagcaacgg ttagtggcgt atgtggttgg
      361 cgaagtggcg ggattggacc agggcacgct gcggcgtgaa ttaggagtgc ggttaccgga
      421 ctacatgata ccggcagcga tcgtggagtt ggaccaattg ccgttgacgg cgaacgggaa
      481 agtggaccgg cgcgcgttgc ccgaacccga gcggatgaga tctcagggaa gtgagtacgc
      541 tgcagcgcgg acgccggtgg acgagttgtt gtgcggcatc tgggcggaag tgttgggcgt
      601 tgagcgagtg ggcgttgacg acaacttctt cgaacttggc ggtcattcgt tgctcgcgac
      661 tcaggtcgtc tcgcgcgtgc gagaaacgtg cggcgtcgaa atcgcgttgc gtgagctgtt
      721 cgaagcgcca agcgtgcgtt tgctagccgt tgtggtcgaa gaagcgcgac gtgttgacca
      781 gggcgtggcc gcgccaccga tagtggccgt ggggcgtgat cgagagttac cgctttcgtt
      841 tgcgcagcag cggctgtggt tcctcgacca actggaacca aataacccgt tttacaacat
      901 tccggcggtg gtccatctgc aaggagcgct ggacctgcgc gcactgacag acgctttcac
      961 agctttggtg cggcggcacg cgtcgctgcg cacctccttc ggtgcacccg aaggaagacc
     1021 gcagcaggtg atcgccgcac ccgcagactt cacgctgaca atcgaggatc tctcggacat
     1081 acacgcagag gagcggttgg cgccggcgac ggagttggcg gcggcggagg cacaacgtcc
     1141 gtttgatctg gaagcgggcg ggttgctgcg agtgaagctg tggcggctga gtgatgacga
     1201 gcatgtgttg gcgttggtga tgcaccacat cgtttcggac gggtggtcca tgggtgtgct
     1261 ggtgcgggag ttggtggagc tctacgatgc cagtcgagcg ggacgagaac caaagctgga
     1321 gcgtctagcc gtgcagtacg cagacttcgc ggtgtggcag cgtgagtggc tgagtggtgc
     1381 ggtgttggag cggcagttgt cgtactggag taagcagtta gcgggtgcgc cgccagtgct
     1441 cgaactgccg acagattatc cacggccagc ggtgcaaagc catcgcggcg cgaccgttcc
     1501 cttcaatgtg acggcggaac tcactgccga tctgaaacag ttgtcgcaac gcagcggcgt
     1561 gaccttgttc atgacgttgc tcgcagcatt cgacgtgctg ctgatgcact acaccaacca
     1621 gacagacatc gtcgtcggca ccaacatcgc caaccgcaac cgcgccgaaa ccgaaaacct
     1681 gatcggcttc ttcgtcaaca atctcgtgtt gcgcacagac ctttcaggca atcccagtgt
     1741 tcgtgaactg ctcgatcgcg ttcggaacgt ctgcctcggt gcttacattc accaggacat
     1801 gccgttcgac aagctcgtcg aagagctgcg tccggaacgc atgctgagtc acaaccctct
     1861 gttccaggtg atgtttgttt tgcaaaacgc gccgcgcacc gttttggaag ttcccgggct
     1921 caccttccgt tcaatcagca atacgcgcaa cgtatccagg ttcgatttgc tggtgaacgt
     1981 cttcgagact cccgacggct tgcaaggctc cgcggaatac agcaccgacc tcttcgacgc
     2041 ttcgaccgtg aagagaatgc tggaccacta cgcgacgctg ctcgccgccg tcgctgccga
     2101 tcccgacaaa ccactgcagg gttttt
//
LOCUS       DASWTX010001424         2740 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_20089, whole genome shotgun sequence.
ACCESSION   DASWTX010001424 DASWTX010000000
VERSION     DASWTX010001424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2740)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2740)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2740
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20089"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2648)
                     /locus_tag="VGD38_21670"
     CDS             complement(<1..2648)
                     /locus_tag="VGD38_21670"
                     /inference="COORDINATES: protein motif:HMM:NF019350.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY0730709.1"
                     /translation="MWIGSARGLFRFDGIEFESYVPPAGVTLPAHNIYALLATSDGGL
                     WIAFRPYGLAFLKAGQMKVFSRPEELPKSEVFCLASDSEGRIWAGTLTGLALFDGARW
                     IEIGSDWNLTNQRIWSMFTDRDGTFWVAAGDTIAYLPRGSKSFQQINLRTVGVPQIAQ
                     GKDGRLWMTQWEKPVRTVPVNSLTTTANDTEIQVDAYKLFFDRDGSMWMIGRLANGIT
                     RLRFPEKFVKGQLARNSPELESFGALDGLTDNTTGNILEDREGNIWISSSKGLDRFSR
                     SHLVSLNLPPTYGSLTLLAGDGGDIWVASTNPNPLLRISDKEIIERSVPLRVASVYRD
                     SGGTVWWGGNGGIWKQTKDGFEFFRHPVGSSAWFWEIFPAADSGGLWTRLGDLGLVHF
                     KDGSWTNTEKPKDLPEKAPSASFRDQQGRVWLGYSNGTVYLLNGQEVQSFSRADGIDI
                     GKIKVIRGRGAHIWLGGETGLAIFNNGRFKTVNTVGPSLGSVSGIVESTDGAVWLNEM
                     RGIVCIPPDESRRLLDNSEHRVTYRLYDVLDGMPGAPQMNYTVSAAVETSDGRIWFAT
                     DNGLAWIDPARLKINDLPPPVLIKSLTTDKRTYHLTDVLELPSGTENLRINYAALSLS
                     VPERVRFKYRLEGIDDDWRDAGTRREASFANLGPGAYRFRVIAANNDGVWNEEGAALE
                     FTILPMFYQTNWFLALCVGAFTFLGWLGYRWRVRQVKNLLHVQFQERLAERTRIAQDL
                     HDKLLQGFVSAKLQLFTEVHDLPPETPKTKRLKGIYELLGQLIEEGRNTVKDLRASES
                     DEFSNFEQVFLKIREEFDSAKKIDFKIAITGTPRVLHPLIGSEMLQIGHEALINAFLH
                     SRATAIEIEIEYGLKSLNLIVRDNGCG"
BASE COUNT          634 a          779 c          680 g          647 t
ORIGIN      
        1 ccgcaaccat tgtcgcgcac gattaaattc aacgacttca atccatattc gatctctatc
       61 tcgatcgccg ttgcgcgtga atgaagaaaa gcattgatca atgcttcatg tccgatttga
      121 agcatttcac tgccgataag cggatgcaaa actcgcggag tgccggttat ggcgattttg
      181 aagtcgatct ttttagccga atcaaactct tctcttattt ttaagaatac ctgttcgaaa
      241 ttgctgaact cgtcagactc cgaagcccgc aaatctttga ctgtgtttcg gccttcttcg
      301 atcagttggc ccagtagttc gtaaatgcct ttcagacgtt tggtttttgg agtttccggc
      361 gggagatcgt gcacttcagt gaagagctgt agttttgcgc tgacaaatcc ctgcagaagc
      421 ttgtcgtgca aatcctgagc gatgcgcgtc cgctccgcga gacgttcctg aaactgtacg
      481 tgcaaaagat ttttgacctg ccggacgcgc caccgataac cgagccagcc taaaaaggtg
      541 aaggcgccaa cacaaagcgc gagaaaccag ttcgtctggt agaacatcgg cagaatggta
      601 aactccagcg ccgcgccttc ttcgttccaa actccatcgt tgtttgctgc aatcactcga
      661 aaccgataag cccctggtcc aagattggca aaagaagctt cgcgccgcgt tccggcgtct
      721 cgccaatcgt cgtcgatacc ttcgagccgg tatttgaaac gcacgcgttc gggcacggac
      781 aagctcaacg ccgcataatt gatccgcagg ttttccgtgc cgctcggcag ttccaaaaca
      841 tccgttaagt gataggttct tttatccgtc gtcagcgatt tgatgaggac gggcggcggc
      901 agatcattta ttttcagtcg cgcaggatca atccacgcca aaccgttgtc ggtggcaaac
      961 cagatgcgcc cgtcagacgt ttcgaccgct gccgaaactg tgtagttcat ctgcggcgcg
     1021 cccggcatgc cgtcgagaac gtcgtagagc cgataagtta ctcgatgctc ggagttgtcc
     1081 aacaaccggc ggctttcatc aggaggaata caaacaatcc cacgcatttc gttgagccaa
     1141 acagcgccgt ccgtagattc gacgattccc gaaacagaac cgagcgaagg tccaacggta
     1201 ttgactgttt tgaaacgccc gttgttgaaa attgccagac ccgtttcacc acccagccaa
     1261 atgtgcgcgc cgcgaccgcg aatgactttg atcttcccga tatcaatgcc atcagcgcgg
     1321 gaaaaagatt gaacctcttg accgttgagc aaatagacag tgccgttgga gtagccgagc
     1381 cacactcttc cctgctggtc acgaaaagaa gcgctcggcg ctttttcagg taagtctttt
     1441 ggcttttcgg tattggtcca agagccatct ttaaaatgga ccagacccag atcccccagc
     1501 ctggtccata ggccacccga gtcagcagcg ggaaagattt cccagaacca ggcgcttgag
     1561 cctaccggat gccggaagaa ctcaaatccg tctttggtct gtttccaaat cccgccgtta
     1621 ccgccccacc aaaccgttcc gccggaatca cgataaacgc tcgccaccct taacggcacg
     1681 cttcgttcaa ttatttcttt atcgctgatg cgcaacagag gattcgggtt cgtactggca
     1741 acccagatat cgccgccatc cccggccagc aatgtcagac ttccgtaagt cggcggcagg
     1801 ttcagcgaaa cgaggtgact gcgactgaag cgatcgagtc ccttgctcga gcttatccag
     1861 atatttccct cgcggtcctc gagaatgttg ccggtcgtgt tatcagtcaa accgtccagc
     1921 gcaccgaatg attcaagctc gggtgagttg cgggcaagtt gacccttcac gaacttctcc
     1981 ggaaacctca gccgagtaat gccattcgca aggcgaccga tcatccacat gctaccgtcg
     2041 cgatcgaaaa acagtttgta agcgtcaact tgaatttctg tgtcgttcgc tgtggttgtc
     2101 agactgttga ccggaaccgt tcggacgggc ttctcccatt gcgtcatcca aagccgccca
     2161 tctttgcctt gcgcaatttg cgggacgccg accgtgcgga gattgatctg ttggaaagat
     2221 tttgagccgc gaggcaagta cgcgatagtg tcgcccgcgg ccacccaaaa tgttccgtcg
     2281 cggtccgtaa acatggacca gattctttgg tttgtcagat tccaatcgct accgatctcg
     2341 atccagcgcg cgccgtcgaa taaagccaat cccgttaatg ttccagccca gattcgacct
     2401 tcggaatcgc ttgcgagaca gaagacttcg cttttgggta attcttcagg gcgggaaaaa
     2461 actttcatct gaccagcttt gagaaaagcc agcccgtaag gtctgaaagc tatccacaat
     2521 cctccgtcag atgtcgccag cagcgcatag atgttgtgcg ccggcaacgt cacgcccgcc
     2581 ggcggtacgt aggattcgaa ctcaattccg tcgaatctaa acaaccctct cgctgagccg
     2641 atccacaagt agccgtcctc ggtctgagcc agcgcagtga tctggctcgg ggcgccgtct
     2701 tttgcagtcc acgcggtgtg gtgtaattgc ctcaacgttc
//
LOCUS       DASWTX010001425         2531 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_193382, whole genome shotgun sequence.
ACCESSION   DASWTX010001425 DASWTX010000000
VERSION     DASWTX010001425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2531
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193382"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..885)
                     /locus_tag="VGD38_21675"
     CDS             complement(<1..885)
                     /locus_tag="VGD38_21675"
                     /inference="COORDINATES: protein motif:HMM:NF012343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HEY0730710.1"
                     /translation="MQPIESFEVPAPPKVNYINAQYGLKSWLLTKDHKRIALLYLGSI
                     TFFFFIGGIYALMIRLELLTPQGDLLQSTTYNKVFTQHGILMIFFFLIPSIPATLGNF
                     LIPMMIGAKDLAFPRINLLSWYVYLLGGIITIYALLAGGVDTGWTFYTPFSTTFSNSY
                     VVATGLGIFINGFSSILTGLNFIVTIHTMRAPGMTWFRMPLFLWSHYATSLIMILGTP
                     VVAITILLLAFERLSGVGIFNPALGGDPVLFQHLFWFYSHPAVYIMILPSMGVISELI
                     ANFSRKNIFGYSFVAFSSL"
     gene            complement(901..1917)
                     /gene="coxB"
                     /locus_tag="VGD38_21680"
     CDS             complement(901..1917)
                     /gene="coxB"
                     /locus_tag="VGD38_21680"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR02866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HEY0730711.1"
                     /translation="MQGWLPLVPESASTFSWQVDALYFDLSGVTLFFVLLISAVLIFF
                     TIRYRRRTPYEIPRPIAGSHKLETLWTVIPFVIAMTMFGWGARIYFDQYKPPQNAIEV
                     YVVGKQWMWKLQHATGQREINELHVPVGRKIKLIMTSEDVIHDFFVPAFRTKADVLPG
                     RYTTLWFEATKPGKYHLFCAEYCGMNHSGMTGSVYVMEPREFDNWLSGNTGSATPAAA
                     GQQLYQTLGCASCHGANGEGGRGPTLTGLFGRPTPLENGQTINADEGYIRESILNPGA
                     KIVAGFTPIMPTFQGQVTEDQLVQLLAFIKSLPGGTGATPGASPGTPLPSPRASGSPT
                     ENIR"
     gene            complement(1917..>2531)
                     /locus_tag="VGD38_21685"
     CDS             complement(1917..>2531)
                     /locus_tag="VGD38_21685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEY0730712.1"
                     /translation="LCTQILNGMVTSFRVLPFQVGKEFDVVTISFDPRETPELAQKKK
                     KVYVDYLPERMRADAAKGWHFLTGDEANIAKITDAAGFRYRWDEKTQQFAHASAIMVT
                     TPHGKLSRYYYGIEYPARDLRFGLIESSANKIGSSVDQLLLYCYHYDPATGRYGAVVM
                     RIMRVAGVITLLGIVAMLFLLKARHAVSELKPPVAEPKTGGAAL"
BASE COUNT          589 a          709 c          718 g          515 t
ORIGIN      
        1 gagactcgag aacgccacga agctgtagcc gaagatgttc ttgcgcgaga agttcgcaat
       61 cagttcgcta attacgccca tcgacggcag gatcatgatg tagaccgccg ggtgcgagta
      121 aaaccagaac aggtgctgga atagaaccgg atcgccgccg agggcgggat tgaaaatacc
      181 gacacccgag agccgttcaa acgccagcag caaaatcgtg atcgcgacga cgggagtacc
      241 gaggatcatg atcaggctgg tagcgtagtg tgaccacagg aagagcggca tgcgaaacca
      301 cgtcatgccc ggcgcgcgca tcgtgtgaat cgtgacgatg aaattcagcc cggtcaggat
      361 cgacgagaaa ccgttgatga agattcccag cccggtcgcg accacgtacg agtttgaaaa
      421 cgtcgtgctg aaaggcgtgt aaaaggtcca acccgtatcg acgccacccg cgagcagcgc
      481 gtagatggtg atgatgccgc ccagcaggta cacgtaccaa ctgagcagat ttatcctcgg
      541 aaatgcgaga tcttttgctc cgatcatcat cgggatcagg aagtttccca acgtcgccgg
      601 tatcgacggg atcaggaaga aaaagatcat gaggatgccg tgctgagtga agaccttgtt
      661 gtaggtagtc gactgcagaa gatcgccctg cggagtcagc aactccaggc gaatcatcaa
      721 ggcataaata ccgccgatga aaaagaagaa cgtgatcgag ccgagataga gcagcgcgat
      781 gcgcttgtgg tccttggtca acaaccacga cttcaacccg tattgcgcgt tgatgtagtt
      841 gaccttcggc ggcgccggta cttcgaatga ctctattggt tgcataaaaa cttccccacg
      901 ctagcgaatg ttttccgtgg gtgaacccga tgctcgcggc gaaggaagcg gtgttccagg
      961 cgatgcgcct ggagtcgctc cggttccgcc cggcaacgat ttaataaacg ctaataactg
     1021 tactaactga tcttcagtga cctgtccctg gaacgtcggc atgatcggcg taaagccggc
     1081 gacgatcttc gcgcccggat tcagaatcga ttcgcgaatg tagccttcat ccgcgttgat
     1141 tgtttgcccg ttttcgagcg gtgttggcct cccgaaaaga ccggtgagcg tcggaccgcg
     1201 tccgccttca ccgttggcgc cgtgacacga ggcgcagccg agagtttgat acaactgttg
     1261 accggccgcg gccggcgttg ccgagcccgt gtttccgctc agccagttat caaactcgcg
     1321 cggctccatc acgtacaccg aaccggtcat tcccgaatgg ttcatgccgc agtactcagc
     1381 gcagaacagg tgatacttcc ccggcttggt tgcttcaaac caaagcgtcg tgtatctgcc
     1441 gggcaagacg tcggccttgg ttctgaacgc cggcacgaag aaatcgtgaa tcacgtcttc
     1501 ggaagtcatg atcaacttga tcttgcgccc gacaggcacg tgcaattcgt tgatctcgcg
     1561 ttgaccggtg gcgtgttgca gtttccacat ccactgcttg ccgacgacgt aaacctcaat
     1621 cgcgttttgc ggcggtttgt actggtcgaa ataaatgcgt gcgccccagc cgaacatcgt
     1681 catcgcaatg acgaaaggaa tgacggtcca gagcgtctcg agcttgtgcg agcccgcgat
     1741 cgggcgcggg atctcgtaag gcgtacgccg ccggtaacga atcgtgaaaa agatcaggac
     1801 ggccgagatc agcagcacga agaaaagcgt cacgcccgac aggtcgaaat agagagcgtc
     1861 gacctgccac gaaaacgtgg aggcgctctc aggaaccaat ggaagccaac cctgcattac
     1921 agtgctgctc ctccggtttt aggctccgct accggcggct tgagctccga tacggcgtgg
     1981 cgcgctttaa gcaaaaacaa catcgcgacg attcctaaca aagtaatcac tccggcgact
     2041 cgcatgatcc tcatcaccac tgcgccgtat ctgccggtcg ccggatcgta gtggtagcag
     2101 taaagcagta actggtcgac tgaagatccg atcttgtttg ccgacgattc aatcaacccg
     2161 aagcgcaggt cgcgagcggg atactcgatg ccgtagtagt accgcgacag tttcccgtgc
     2221 ggcgtcgtca ccatgatcgc gctggcgtga gcaaactgtt gcgtcttctc gtcccaccga
     2281 tagcgaaagc cggcggcgtc ggtgatcttc gcgatgttcg cttcatcgcc ggtcaagaag
     2341 tgccagccct ttgcggcgtc agcacgcatt ctttccggca agtaatcgac gtaaaccttt
     2401 ttcttcttct gcgcgagctc cggagtttct cgcgggtcga agctgatcgt caccacgtca
     2461 aactctttgc cgacctgaaa cggcagcact cgaaacgacg tcaccatgcc gttgagtatc
     2521 tgcgtgcaga g
//
LOCUS       DASWTX010001426         4559 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_20156, whole genome shotgun sequence.
ACCESSION   DASWTX010001426 DASWTX010000000
VERSION     DASWTX010001426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4559
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20156"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..867
                     /locus_tag="VGD38_21690"
     CDS             <1..867
                     /locus_tag="VGD38_21690"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY0730713.1"
                     /translation="NASHWEILEMFRVAARYNASCHVHMRNAGAREPASSVQALEEAI
                     SAAAITGAPLHVVHIHSTGGPATPKLLQMIGEARARKLDITTECYPYIAGMTDIKSAI
                     FNEGWQEVFGIDYKDLQWAATGERLTKETFEKYRKTGGMVAVFSMTEEIVLEALRNPL
                     TMIASDGILDNGKGHPRTAGTYSRVLGKYVREDRALSLIDALAKMTLMPAQRLERRVP
                     AMKNKGRIRLGADADLTIFDPQTISDRATFKDPAIATVGVRFVVVNGVLVVKDGQLQA
                     NVHPGGPIRAPF"
     gene            893..2428
                     /locus_tag="VGD38_21695"
     CDS             893..2428
                     /locus_tag="VGD38_21695"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEY0730714.1"
                     /translation="MLFFCISTANGQQSGQSGPPLLTFDDLVALYENDVPSPELAARL
                     NRLLTTPFVNNNAGVRGPKAGARSDFGKRFIRVATWNVERGLEFNAIKAALTNDQRFF
                     RRLSADTRSSRFNLTEILDQAAMLSRADVIVLNEVDWGVKRTDYRNVARELATALQMN
                     YVFGVEFVEVDPLTLGTETLEGEISEDKPEMIKNLEVDRARTLGLHGTAILSRFPLRN
                     VRLVPFVNKGHDWYEDEKKGVSVLEKGKRKGAGIVLGEKIAREVRRGGRMMLLADIDE
                     RNIPGGRMTIVATHLEAKAKPSERLKQLEEILALIQPTPHPVVLAGDMNTSGSDSTPT
                     SFQREIKKRLGSSKFWATQGIKYATGVGLLYDITVGAVKFERTRKDPTVKSIKFVSEN
                     PEEKFFSTLKDFRFADGGAFDFRGSKQHSVGASGETFSDSNQRASKGFVSTMEMNGKI
                     SVALKLDWIFVKPVGLTDPDDNDQPFRFAPQFGRTLKSLNYALKDRISDHNALIVDLP
                     LDN"
     gene            complement(2411..3352)
                     /locus_tag="VGD38_21700"
     CDS             complement(2411..3352)
                     /locus_tag="VGD38_21700"
                     /inference="COORDINATES: protein motif:HMM:TIGR00765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEY0730715.1"
                     /translation="MKSLWALRNITWFELGKRVWTEANNDRIFGRAAELSYYFLLALF
                     PLLIFMTSAIGLVLGSDMGTRQQLFSYLARIMPASAFQLVNDTMLEVSQASGGGKLSF
                     GLLAALWAASNGMSAITDSLNAAYDIEEGRPWWKQRLVAITLTVTLSVLIISALLLVV
                     AGGHIAEGIANAYGFGPAFAMVWKIVQWPMALAFMVLAFALIYYVAPDLRDQKWTWLT
                     PGAAIGVVLWVLVSLGFRLYLEFFNSYSATYGSLGAVIILMLWLYFTGAAVLIGGEIN
                     SEIENAAAETGEPEAKERGEKSPDEKEMKRGDLVVER"
     gene            3696..3830
                     /locus_tag="VGD38_21705"
     CDS             3696..3830
                     /locus_tag="VGD38_21705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730716.1"
                     /translation="MLIGNTIEAGADIGGMSAAIAVLVPVPLPFITVPVTAAIFALQV
                     "
     gene            3843..>4559
                     /locus_tag="VGD38_21710"
     CDS             3843..>4559
                     /locus_tag="VGD38_21710"
                     /inference="COORDINATES: protein motif:HMM:NF013715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HEY0730717.1"
                     /translation="MIRNIFRWLALTLLAYVGAAILAKPDLMEVIRGTLIPTIRFDQQ
                     FLSLLVAVIGTTLSAYLYTWQSNQEVEEEIAMDRRRLVDRQGATHQELKATRKDVITG
                     MFFSNLMMYFIILSTASTLFKTGATEINTAAEAAEALRPLAGGAASALFALGVIGVGF
                     LAVPIMTTGAAYDLCQVMGWKSSLHAKPAQAKKFYVTIGVCTVLAMAMNFLGFNPMKA
                     LVFSSVDRTNSLGMNILGRLT"
BASE COUNT          986 a         1270 c         1357 g          946 t
ORIGIN      
        1 aacgcttcgc actgggagat cctggaaatg tttcgcgtgg ccgcgcgcta caacgcctcg
       61 tgtcacgtac acatgcgcaa cgccggcgcg cgagaacccg cgagcagcgt gcaggcactc
      121 gaagaggcga tctccgccgc ggccattacc ggagcgccgc ttcatgtggt acacattcac
      181 agcacgggtg gaccagcgac accaaaactg ttacagatga tcggcgaagc gcgcgcgcgc
      241 aagctcgaca tcacgaccga gtgttacccg tacatcgccg gtatgaccga catcaaatcg
      301 gcgatcttca atgaaggctg gcaggaggtc tttggtatcg actacaaaga cctgcagtgg
      361 gccgcgactg gcgaacggct cacgaaagag acttttgaaa agtatcgcaa gaccggcggc
      421 atggtcgcgg tcttttcgat gactgaagag atcgtgcttg aagcattgcg aaatccgttg
      481 acgatgatcg ccagcgacgg cattctcgac aacggcaagg gccatccgcg cacggcaggc
      541 acttactcgc gcgtgttagg aaagtatgtg cgtgaagatc gcgcgctgag tttgatcgac
      601 gcgctggcga agatgacgtt gatgccggca caacggctcg aacggcgagt gccggcgatg
      661 aaaaacaagg gccgcattcg tctcggtgcg gacgcggacc ttacgatctt cgatccacaa
      721 acgatcagcg atcgcgcgac gtttaaagat ccggcgatag caaccgtggg cgtaaggttt
      781 gtagtcgtga atggcgtgct ggttgtgaaa gatggtcagt tgcaagcgaa tgttcatccg
      841 ggaggaccga ttcgtgcacc tttttaagcc acagattatt cggatattct gcgtgctgtt
      901 tttttgtatt agtactgcaa acggccaaca gagtgggcaa agtgggccac cgctactgac
      961 cttcgacgat cttgtcgccc tttacgaaaa cgacgttccg tcaccggagc ttgccgcccg
     1021 gctcaatcgt ttgctgacta cgccattcgt aaacaacaat gccggcgtgc gtggtccaaa
     1081 agccggcgcg agaagcgatt ttggcaaacg attcattcgc gtcgcgacgt ggaatgtcga
     1141 gcgcggcctg gaattcaacg cgatcaaggc cgcgttaaca aacgaccaga ggtttttccg
     1201 ccgtctttca gcggacaccc gcagctcgcg tttcaacctc accgagatac tcgatcaggc
     1261 ggcgatgttg agccgcgctg acgttatcgt gctcaacgaa gtcgattggg gagtgaaacg
     1321 aaccgattac cgcaacgtcg cgcgcgagct cgcgaccgcg ttgcagatga actacgtgtt
     1381 cggcgtcgag ttcgtcgaag tcgatccttt gacactgggc accgagacac tcgaaggcga
     1441 gatcagcgaa gacaagccgg agatgatcaa gaacctcgag gtcgatagag cacgcacgct
     1501 cggtctgcac ggcaccgcga tcctcagtcg ctttcctttg cgcaacgtca ggctcgtgcc
     1561 ttttgtaaac aaaggtcacg actggtacga ggatgagaag aaaggcgtgt cggtgctcga
     1621 gaaagggaag cgcaaaggcg ccggcatcgt gctgggggag aagatcgcgc gtgaagtgcg
     1681 gcgcggcggc cgcatgatgc tgctcgccga catcgacgag cgaaacatcc ccggcggccg
     1741 catgaccatc gtcgccacgc atctcgaagc caaagcaaaa ccgtcggaac gtttgaaaca
     1801 actcgaggaa atactcgcgc taatccaacc gacgccgcat ccggtcgtgc tcgccggcga
     1861 catgaacact tccggcagcg actccacgcc gacttcattt caacgcgaga tcaagaagcg
     1921 gctcggcagc agcaagttct gggcgaccca gggaatcaag tatgcgaccg gcgttggttt
     1981 gctttacgac atcacggtcg gcgccgtgaa gttcgagcgc accagaaaag atccgaccgt
     2041 gaagagcatc aagtttgttt ccgagaatcc cgaagagaag tttttcagca cgttgaagga
     2101 ttttcgtttt gctgacggtg gggctttcga tttccgcggc tcgaaacagc attccgtggg
     2161 cgcaagtggt gaaacttttt ccgactccaa ccagcgcgcg tcgaaaggtt tcgttagcac
     2221 gatggagatg aacggaaaga tcagtgtggc gttgaagctc gattggatct ttgtgaaacc
     2281 ggttgggcta acggatcctg acgacaacga tcaaccgttt cgctttgcgc cgcagtttgg
     2341 ccgcacgctc aagtcgttga actatgcgct caaggatcgc atctcggatc acaacgcgtt
     2401 gattgtcgat ttaccgctcg acaactaaat cgccgcgttt catttccttc tcgtcgggac
     2461 tcttctcgcc gcgttctttt gcttcgggtt cgccggtctc agccgcggcg ttctcgatct
     2521 cggagtttat ctcgccgccg atcagcacag ccgcgccggt gaaataaagc cacagcatga
     2581 gaatgatcac ggctccgagc gagccgtagg tcgcgctgta ggaattgaaa aactcgagat
     2641 agagacgaaa gccgagcgag accaacaccc acaatacgac gccgatcgcc gcgcccggtg
     2701 tgagccacgt ccatttctgg tcacgcaaat cgggcgcgac gtagtagatc aaggcaaacg
     2761 cgagaaccat gaacgcgagc gccatcggcc actgaacgat cttccacacc atcgcgaaag
     2821 ccggaccgaa gccgtaagcg tttgcgatgc cttccgcgat gtgtccgccc gcgacgacca
     2881 gaagcaaagc cgagatgatc agaaccgaga gcgtcacggt caacgtgatc gcgacgaggc
     2941 gttgtttcca ccacgggcgt ccttcctcga tgtcgtaagc ggcgttgagt gaatcggtga
     3001 tcgcgctcat gccgtttgac gctgcccaaa gcgcggcgag caaaccgaac gatagttttc
     3061 cgccgccact tgcctgagac acttcgagca tcgtgtcgtt gaccagttga aaagcggagg
     3121 ccggcatgat gcgcgcgaga taactgaaga gctgctgccg cgtgcccata tcggagccga
     3181 ggactaggcc gatggccgat gtcatgaaga tcagcaacgg gaacagtgcg agcaggaagt
     3241 agtacgaaag ctcggcagcg cggccgaaga tgcgatcgtt gttcgcttcc gtccagactc
     3301 gtttacccaa ctcgaaccag gtgatgttgc ggagcgccca aagcgatttc atggcactcg
     3361 tgctcctttc gacgtacgtt ttccaatcgc taagcgggcc tgctgcgacg tgtgcaacgt
     3421 tgataccagc gggaatgcgc tttgctgcta gccgcgtacg ctcgggctcg gattgatcac
     3481 gggcgctgct gacgacgatc cttccgctat cggaacttac gcgagtgccg gagctgcgat
     3541 cagtccggcg tttttgtgga ctgcgcccgt cacgtttccg atgatgtgcg ccgtcgttta
     3601 cctgtcggcg aagttaggac aggtttccgg caagggcctc ttccacgtca tcaaagatca
     3661 ttacccgcgc tggatactct accccgcgct gatcggtgct gatcggaaac acgatcgaag
     3721 cgggtgcgga catcggcggt atgtcggcgg cgattgcggt gctcgtgcct gtgccgttgc
     3781 cgttcatcac tgttcctgtg actgcggcga tcttcgcgct gcaagtctga ggttcttaca
     3841 cgttgatccg caacatcttt cgttggctcg cgttgacgtt gctcgcgtac gtcggagcag
     3901 cgattctcgc gaagccggat ctgatggaag tgatcagagg tactttgatc ccgacgattc
     3961 gtttcgatca gcagtttctg tcgctgctcg tggctgttat tggcactacg ttgtcggctt
     4021 atctttacac gtggcagtca aaccaggaag tcgaggagga gatcgcgatg gaccggcggc
     4081 ggctcgtcga tcgccagggc gcgacgcacc aggagctgaa ggcgacacgc aaggacgtga
     4141 tcacgggcat gttcttttcg aacctcatga tgtacttcat cattctctcc actgcgtcga
     4201 cgctgttcaa aaccggcgcc actgaaatca acaccgccgc ggaagctgct gaggcactgc
     4261 ggccgcttgc gggcggtgcc gcgtccgcgc tgtttgcgct cggtgtgatt ggtgttgggt
     4321 ttttggctgt tccgatcatg accacgggcg ccgcttacga cctgtgtcag gtgatgggat
     4381 ggaagagcag tcttcatgcg aagccggcgc aagcgaagaa gttctatgtg acgattggcg
     4441 tctgcactgt gctcgcgatg gcgatgaact tcctcggctt caatccgatg aaggcgctgg
     4501 tgttttcgag cgtcgaccga acaaacagtc tcgggatgaa catcctcggc cggctcacg
//
LOCUS       DASWTX010001427         3002 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_150074, whole genome shotgun sequence.
ACCESSION   DASWTX010001427 DASWTX010000000
VERSION     DASWTX010001427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3002
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150074"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..367)
                     /locus_tag="VGD38_21715"
     CDS             complement(<1..367)
                     /locus_tag="VGD38_21715"
                     /inference="COORDINATES: protein motif:HMM:NF024799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEY0730718.1"
                     /translation="MRKILLTLFSILLAVAALSCTRAEAPTAGKKLTIAVIPKGTTHE
                     FWKSIHAGSNKAAAELTSLGTDVEVIWKGPLREDDREQQIQVVEGFTTQGVNGIVLAP
                     LDNRALVRPVTEAQRAGVPT"
     gene            complement(369..1307)
                     /locus_tag="VGD38_21720"
     CDS             complement(369..1307)
                     /locus_tag="VGD38_21720"
                     /inference="COORDINATES: protein motif:HMM:NF013706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEY0730719.1"
                     /translation="MQIIAFATEESDWKTPRMGIILSHAGRDTGYRLDCERLFNPSGH
                     PSNPLAWFDMDGPWFQKAREIFDSVERDITALDHAKEQGWLVPARDAYWFAPVPRPGK
                     LICIGLNYRDHAKESNMPLPEKPVVFSKFSSAVIAPGEPVVLPATSRQVDYEAELAVV
                     IGRRAKNVSADRAYDYVLGYTAFNDVTARDFQFADGQWQRGKSCDTFAPMGQTIVTTD
                     TIPDPHRLSIKLTLNGEVMQDSNTDQLIFGVPRLIEFISESITLEPGDVIATGTPPGV
                     GFARKPPVFLKPGDEMEVLIEGMGGLGNPVVAEQEN"
     gene            complement(1307..1801)
                     /locus_tag="VGD38_21725"
     CDS             complement(1307..1801)
                     /locus_tag="VGD38_21725"
                     /inference="COORDINATES: protein motif:HMM:NF014628.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein"
                     /protein_id="HEY0730720.1"
                     /translation="MSLQFPFKTAAPEVVQLFKQNLELVDGRCIVVNNQAEVEETVKR
                     LTEGKKIATPDEPRSDLFKSEIGITSAQAGIAETGTLVLDSSVDRNRLVSLVPPVHIA
                     ILDASRIYTTLGETLAALQSGAELSPAITFITGPSRTADIELTLTIGVHGPQELYVII
                     NQNA"
     gene            complement(1887..>3002)
                     /locus_tag="VGD38_21730"
     CDS             complement(1887..>3002)
                     /locus_tag="VGD38_21730"
                     /inference="COORDINATES: protein motif:HMM:NF014628.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0019516 - lactate oxidation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein B"
                     /protein_id="HEY0730721.1"
                     /translation="RLTVERGARNVVNSKSMTTEEIHLNEALERAGMQVVETDLGEYI
                     IQLADEAPSHIIAPAIHKTKRQVAELFTTELGMPPTDDVGELTSTARVTLRERFANAD
                     VGISGVNFGIVETGTIVIVENEGNIRLTTSLPRTHIAVMGIEKLLPRFADLDVFLKLL
                     PRSGTGQALSTYQSFITGTKRNTSDEGPEELHIVLLDNGRSRMLAHPVTRQSLACIRC
                     GACLNSCPVYQQIGGHAYGSVYPGPIGSVITPQLIGIQKAAQLPYASSLCGACREVCP
                     VKIDIPRLLLHLRGEISEKQPSGRAKERLAFKLWAAIMTRPKLYEKTAIAARLFQRWF
                     KLPVRAWTTGRDLRPIEAESFREHWQRGGNDPQRRGA"
BASE COUNT          581 a          902 c          862 g          657 t
ORIGIN      
        1 cagtgggcac gcctgcgcgt tgtgcctcag ttaccggacg aactaacgcg cgattgtcca
       61 gcggcgcgag cacgatgccg ttgacgcctt gcgtagtaaa tccttcgacg acctggatct
      121 gctgttcgcg atcgtcttcg cgcaacgggc ctttccaaat aacttcgacg tccgtgccca
      181 gcgaagtgag ctcagccgca gccttgttgc tgcccgcgtg aatactcttc caaaactcgt
      241 gcgtcgtgcc tttcggaatc accgcgatcg tcagtttctt gcccgcggtt ggagcttcgg
      301 ccctggtaca actcagggct gcaacggcga gcaggatcga gaacaacgtt aagagaattt
      361 tgcgcatgtc agttttcctg ttccgcaaca acggggtttc ctaaacctcc catgccttca
      421 atcaagactt ccatttcatc gcccggcttc agaaacaccg gcggcttgcg tgcgaagccg
      481 acgccgggcg gcgtgccggt cgcgattacg tcgccgggct cgagcgtgat cgactcggag
      541 atgaattcga tcaatcgcgg cacgccgaag atcaactgat ccgtgtttga gtcctgcatg
      601 acttcgccgt tcagagtcaa cttgatcgac agcctgtgtg gatcggggat cgtatcagtg
      661 gtgacaatcg tttggcccat cggcgcaaac gtgtcgcacg attttccacg ctgccattgt
      721 ccgtcggcaa actgaaagtc gcgcgctgtg acgtcgttga aagcagtgta gccgagcacg
      781 taatcgtagg cgcgatcggc gctgacattc ttcgcgcggc ggccgatgac gactgccagc
      841 tcggcttcgt aatcaacttg ccggctcgtc gcgggaagca caacgggttc gccgggcgca
      901 atcacggcgc tggagaactt cgaaaacacg accggctttt ccggcaacgg catgttgctc
      961 tctttcgcat gatcgcggta gttgagaccg atgcagatca gtttgccggg acgcggcacg
     1021 ggcgcgaacc agtacgcgtc tctcgccgga accagccagc cttgttcttt cgcgtggtct
     1081 agcgccgtga tgtcgcgttc gacactgtcg aagatctcgc gtgctttctg aaaccatgga
     1141 ccatccatgt caaaccaggc caggggattt gagggatggc cggagggatt gaaaaggcgc
     1201 tcgcagtcga gccgatagcc ggtgtcgcgg ccggcgtggg agaggatgat gcccatgcgc
     1261 ggcgtcttcc agtctgattc ctcggtggcg aaagcgatga tttgcattat gcgttttgat
     1321 tgatgatgac gtagagctcc tgcgggccgt gtacgccgat cgtcagtgtc agttcgatgt
     1381 cggcggtgcg cgatgggccg gtgatgaacg tgatcgccgg gcttagttcc gcgccgcttt
     1441 gcagcgcggc gagagtttcg cccagggtcg tgtagatccg cgaggcgtcg agaatcgcga
     1501 tgtgtaccgg cgggacgagc gacactaatc tgtttcgatc cacagatgaa tcaagcacga
     1561 gcgttcccgt ttccgcaatt cccgcctgcg cgcttgtaat accgatctct gatttaaaaa
     1621 gatccgagcg cggttcatcc ggcgtcgcaa ttttcttccc ttcggtgaga cgcttcacgg
     1681 tctcttcgac ttcagcttgg ttgttgacga cgatgcagcg accatccacc aattccaggt
     1741 tctgcttgaa aagttgaacg acctcgggcg cggccgtttt aaacgggaat tggagcgaca
     1801 aaggtttgga cgcgtcgcga tgggagttca ctaactcgtg cggcttactt gccgcaaggt
     1861 tagagcggat caatcccact ataaattcac gcgcctcgtc gttgcgggtc atttccacct
     1921 cgttgccagt gttcacgaaa actctccgct tcaatggggc gcaggtcgcg cccggtggtc
     1981 catgcccgaa ccggcagctt gaaccaacgt tgaaaaagcc gcgcggcaat cgccgtcttc
     2041 tcgtaaagct tcggccgcgt catgatcgcc gcccacaact tgaacgccaa tcgttccttc
     2101 gcgcggccgc tgggttgttt ctcgctaatc tctccgcgca ggtgcagcaa cagtcgcggg
     2161 atgtcgatct ttacgggaca cacttcccgg cacgcgccgc acaaactcga cgcgtacggc
     2221 aactgcgccg ccttctgaat gccaatcaac tgcggcgtga tcaccgaccc gatcggcccc
     2281 ggataaactg aaccgtacgc atgaccaccg atctgctggt acaccggaca cgaattcaaa
     2341 cacgcgccgc aacgaataca cgccagcgac tgccgcgtga cgggatgggc caacattcgc
     2401 gaacgcccgt tgtcgagcag gacgatgtgc aactcctccg gtccttcatc actcgtgttg
     2461 cgcttcgtgc ccgtgatgaa cgactggtac gtgctcaacg cctgacccgt gcccgaacgc
     2521 ggcagcagtt tcaaaaacac gtcgagatcg gcgaaacgcg gcaacaactt ttcgatcccc
     2581 atcaccgcga tgtgcgtgcg cggcaagctc gtcgtcaaac gaatgttgcc ttcgttctcg
     2641 acgatcacaa tcgtgcccgt ttcgacgatg ccgaagttaa cgccgctgat gccgacgtca
     2701 gcgttggcga atctctcgcg caacgttacg cgcgcggtac tggtcagttc gcccacgtcg
     2761 tcggtcggcg gcatgcccaa ctcagtcgta aaaagttccg cgacctgccg cttcgttttg
     2821 tgaatcgcgg gcgcgatgat gtgcgacgga gcttcatcgg caagttgaat gatgtactcg
     2881 ccgagatcgg tctcgaccac ctgcatgccc gcacgctcca gcgcctcgtt caagtgaatc
     2941 tcttccgtcg tcatgctctt actgttgacg acgttgcgtg cgccgcgttc gaccgtcaaa
     3001 cg
//
LOCUS       DASWTX010001428         2620 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_215164, whole genome shotgun sequence.
ACCESSION   DASWTX010001428 DASWTX010000000
VERSION     DASWTX010001428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_215164"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1689)
                     /locus_tag="VGD38_21735"
     CDS             complement(<1..1689)
                     /locus_tag="VGD38_21735"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY0730722.1"
                     /translation="MFTKPRSFRRLLFLFLPLAIAFNAHAQTKTPLTHEAMWMLKRVG
                     APAPSPDGKWVVFSLVEPAYDEKDQVSDLWIVSSNGTAKPRRLTFTKGGESGVAWSPD
                     SRQIVFSARREGDEVSQLYVLDVANGGEAVRVTSLSTGARSAQWRPDGKALLFVSTVY
                     PGAVDDEANKKIAAERKAQKYRARVYDKFPIRNWDKWLDDMQTHLFVQSVEPGAKAKD
                     LLAGTKLVNERGFAGRSTDSADELDAVWTPEGDAIVFVASTNRDAAAYANTNTSLFKI
                     SANGGEPIRLTTSADSFTRPAFRPDGKALYAIFNTQTDKKVYNLDRLAKLSWPNPGQP
                     VIVTSGFDRAVSNFAMTPDSRSIYLTAEEAGNEKLYTLPADGNEVRLAMDMMRGVYTN
                     LRIPSKASSTMLFVNWESAINPPEVFRLDLESKTQQPLTTFNADQVAKIDWAPLRHFW
                     FTSKAGKRIHNMIALPPNFDERKKYPLLVVIHGGPHSMWRDNWGLRWNYFMLSRPGYV
                     VLLTNYSGSTGFGEAFAQSIQGDPFKGPGNEINEAADEAIRLYSFVDGSRQAAAG"
     gene            1720..2583
                     /locus_tag="VGD38_21740"
     CDS             1720..2583
                     /locus_tag="VGD38_21740"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEY0730723.1"
                     /translation="MDKKFHPAMKAIKVGDVEGLRELVREEPALATSRSTRSHPTLLQ
                     CVALEAKDQPKAREMAEVLIEAGAELNEPLVAAASIGNRPVAELLIERGAAVDGTGGW
                     SPLEEALYWNNQNVVELLLERGAKVKNLRTAAALGRTDLIESFFNTDGSLKPEAGKID
                     WPFGSLDAITNSNHPPNVKQSLLDHINGWSQDRQGIINNAFVYACMHAHTDAAKLLLD
                     KGAEINTVPGGFDYAGTGLHYAALNGHRAMVEFLLDHGADKNVLDTKVGSTAAGWAEY
                     GEHPELLDLLR"
BASE COUNT          532 a          751 c          807 g          530 t
ORIGIN      
        1 acccgccgca gcctgacgcg aaccgtcgac aaacgagtaa agcctgatcg cttcatcggc
       61 tgcttcgttt atctcgttgc ccggtccttt aaacggatcg ccctgaatgc tctgcgcaaa
      121 cgcttcgccg aaacccgtcg aaccggagta gttggtcaac aacacgacat agcccggccg
      181 cgagagcatg aagtagttcc agcgcagtcc ccagttgtcg cgccacatgc tgtgtggtcc
      241 accgtgaatc acgacgagca gcggatactt cttgcgttcg tcgaagttcg gcggcaacgc
      301 aatcatgttg tgaatgcgtt tgccggcttt gctcgtgaac cagaaatgac gcagcggcgc
      361 ccaatcgatc ttcgcgacct gatcggcgtt gaacgtggtg agcggctgct gcgtttttga
      421 ctcgagatcg agacgaaaga cttccggcgg attgattgcg ctttcccagt ttacgaagag
      481 catcgtcgac gacgctttcg acggaattcg caggttcgtg taaacgccgc gcatcatgtc
      541 catcgcgaga cgcacttcat tgccgtcagc cgggagtgtg taaagctttt cgttgccggc
      601 ttcttcagcg gtgagataga tcgatctgct gtcgggcgtc atggcaaagt tgctgaccgc
      661 gcgatcgaaa ccggaagtga cgatcacggg ttggcccgga ttgggccatg acaacttcgc
      721 gagccgatcg aggttgtaaa ccttcttgtc ggtttgcgtg ttgaagatcg cgtagagcgc
      781 tttgccgtcg ggacgaaacg ccgggcgcgt aaaactgtcg gcgctggtgg tcaggcgtat
      841 gggctcgccg ccgttggctg agatcttgaa tagcgacgtg tttgtgttcg cgtaagcagc
      901 cgcgtcgcgg ttcgtgcttg cgacgaagac gatcgcgtcg ccttcgggtg tccagacggc
      961 gtcgagctcg tcagcggaat ctgtgctgcg gccggcgaag ccgcgctcgt tgacgagctt
     1021 cgttcccgca agcagatctt tcgcctttgc gccgggttcg acgctctgca cgaacaggtg
     1081 cgtctgcatg tcgtcgagcc acttgtccca gttgcgaatc ggaaacttgt cgtaaacgcg
     1141 cgcgcgatac ttttgcgctt tgcgctcagc cgcaatcttc ttgtttgcct cgtcgtcgac
     1201 tgcgcccgga tagacggtgc tgacgaaaag cagcgccttg ccatcgggcc gccactgcgc
     1261 cgagcgcgcg ccggtcgaga gcgaagtgac gcgcaccgcc tcgccgccat tcgccacatc
     1321 caacacgtac aactggctca cctcatcgcc ttcgcgccgc gcggagaaca cgatctgccg
     1381 gctgtcggga ctccacgcca caccactctc gccgccttta gtaaaggtca gccgccgcgg
     1441 cttcgcggtc ccattgctgg aaacgatcca caagtccgac acctgatcct tctcgtcata
     1501 agcgggctcg accagcgaaa acacgaccca cttcccatcc ggactcggcg ccggcgcccc
     1561 cacccgcttc agcatccaca tcgcctcgtg cgtcagcggc gttttggttt gtgcatgagc
     1621 gttgaaagcg atagcgagcg gaagaaatag aaacagcaaa cggcgaaagc ttcgtggttt
     1681 agtgaacatg ttgatcctcc tgcgctaaac tacagcatta tggataaaaa gttccatccc
     1741 gcaatgaagg cgatcaaggt gggggacgtt gaggggttga gggagctcgt gagggaggag
     1801 ccggcgttgg cgacgtcgag gtcgacgagg agccatccga cgctgctcca gtgtgtggcg
     1861 ctggaggcga aggatcagcc gaaggcgcgt gagatggcgg aggtgttgat tgaggcgggc
     1921 gcggagttga atgagccgct cgtggcggcc gcgagtattg gtaatcggcc ggtggcggag
     1981 ttgttaatcg agcgaggcgc cgcggttgat ggcaccggcg gttggtcgcc gctggaagag
     2041 gcactgtact ggaataatca gaacgtcgtt gagctgttgc tcgaacgcgg cgcgaaggtt
     2101 aagaacttgc gcaccgccgc cgcactcggc cgcaccgacc tgatcgagag tttcttcaac
     2161 acagatggca gcttgaaacc cgaagccggg aagatcgatt ggccgtttgg cagccttgac
     2221 gcgatcacca actcgaacca tccacccaac gtgaaacaat cgcttttaga tcacatcaac
     2281 gggtggtcgc aggatcgcca gggcatcatc aataacgcgt ttgtctacgc gtgcatgcac
     2341 gcacacaccg acgccgcgaa gctgttgttg gacaaaggcg cggagataaa cacggtgccc
     2401 ggaggtttcg attacgccgg caccggattg cactacgccg cgctgaacgg acaccgcgcg
     2461 atggtagagt ttcttttgga ccacggcgcg gacaagaatg tgttggatac gaaagtcggt
     2521 tcaaccgcag caggctgggc cgagtacggc gagcacccgg aactcctcga cctgctgcgg
     2581 tgaaccacag attagacgga ttgtgcggaa acaactgacg
//
LOCUS       DASWTX010001429         1572 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_215238, whole genome shotgun sequence.
ACCESSION   DASWTX010001429 DASWTX010000000
VERSION     DASWTX010001429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_215238"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..520)
                     /locus_tag="VGD38_21745"
     CDS             complement(<1..520)
                     /locus_tag="VGD38_21745"
                     /inference="COORDINATES: protein motif:HMM:NF015862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-binding protein"
                     /protein_id="HEY0730724.1"
                     /translation="MKTRIAFIALLLLSATLFANAQTVEKKALTIEGAKKVIAGAVAY
                     AKKHNAPGGVIAVVDDGGHLMALERLDGTFAAGADVSIGKARTAALFKRPTKVFEDTI
                     KNGRTSMVALSDAYFTPLQGGVPITIDGQVVGGVGVSGAASAQQDEEMATAGASMLAE
                     TKVTELMPASKPI"
     gene            complement(523..1263)
                     /locus_tag="VGD38_21750"
     CDS             complement(523..1263)
                     /locus_tag="VGD38_21750"
                     /inference="COORDINATES: protein motif:HMM:NF038123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spondin domain-containing protein"
                     /protein_id="HEY0730725.1"
                     /translation="MKRQKLAIGLALLAVCYATQFTVAVATRKVEPTKFKIRVENISN
                     PEGMTASNGEKFPFALSPGMFVLSEKNAPFFTEGKPARKNGLEMQAEDGDPAGLISSL
                     ETMHHSSNLHGVFNTPIGAMAAGPIRPGDSFEFTVTAMPGMKFFMTQMFGQSNDWFYA
                     PGPNGIALFDAKGNPISGDITDQLYLWDAGTEKDEELGVGPNQGPRQKGPNTGEAENG
                     VVHRVKDARWAGKNMEFFRVTIAPEGGM"
     gene            complement(1280..>1572)
                     /locus_tag="VGD38_21755"
     CDS             complement(1280..>1572)
                     /locus_tag="VGD38_21755"
                     /inference="COORDINATES: protein motif:HMM:NF012455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aquaporin"
                     /protein_id="HEY0730726.1"
                     /translation="LGRWTGMFAGALVAIYITIESPISGMSMNPARTFSSAFGADVWM
                     SLWIYFLAPPVGMLLAAEVYRRARANAAIACAKLHHHNNQRCIFRCNFEPNQ"
BASE COUNT          288 a          480 c          433 g          371 t
ORIGIN      
        1 cgatcggttt gctcgccggc atcagttcgg tcactttcgt ttccgccaac atactcgcgc
       61 ccgcggtggc catctcttcg tcctgctgcg cactcgcagc accgctcacg ccgacaccgc
      121 cgactacctg gccgtcgatc gtgatcggaa cgccgccttg caacggcgtg aagtaagcat
      181 cagacagcgc aaccatcgaa gtgcgtccgt tcttgatcgt gtcttcaaag accttcgtcg
      241 gacgtttgaa aagcgccgcg gtacgcgcct ttccgatcga gacatccgcg ccggccgcga
      301 atgttccgtc caaccgttcg agcgccatca aatggccgcc gtcgtcgaca acggcaatca
      361 cgccgcccgg tgcgttgtgc ttctttgcgt aagcgactgc gccggcaatc acttttttcg
      421 cgccctcgat cgtcagcgct ttcttttcga cagtttgcgc gtttgcgaag agcgtcgcgc
      481 tcaacaggag caacgcgatg aatgcgatcc tcgttttcat gatcacattc ctccttccgg
      541 cgcgatcgtc acacgaaaga attccatgtt cttccctgcc cagcgcgcgt ctttcacgcg
      601 atgcaccacg ccgttttctg cttcacccgt gttcgggccc ttttggcgcg gtccctggtt
      661 tgggccaacg ccgagctctt cgtccttttc ggtgccggcg tcccacaagt agagttgatc
      721 cgtgatgtcg ccgctgatcg gattgccttt cgcgtcgaac agcgcgatgc cgtttggtcc
      781 gggcgcataa aaccagtcgt tcgactgtcc aaacatctgc gtcatgaaaa acttcattcc
      841 cggcatggcg gtgactgtga attcaaatga gtcgccggga cggattggac cagcagccat
      901 tgctccgatg ggcgtattga acacgccgtg gaggttggaa ctgtggtgca tcgtctcgag
      961 cgagctaatc aatcccgccg ggtcgccatc ttcggcctgc atctcgagac cgttcttgcg
     1021 cgccggcttg ccttctgtga aaaacggcgc gttcttctcg ctcaacacga acatgccggg
     1081 tgacaacgca aacggaaact tctcgccgtt cgaagccgtc atgccttcgg ggttggaaat
     1141 gttctccacg cggatcttga attttgttgg ttcgaccttg cgcgttgcga ctgcgaccgt
     1201 gaactgtgtc gcgtaacaaa cagccagtag cgccaggccg attgcgagtt tttgacgttt
     1261 catgatttcg gttctccttt tattggttag gttcaaagtt gcagcgaaaa atgcaacgct
     1321 ggttgttatg gtgatgaagc tttgcgcagg cgatcgcggc gttcgcgcgc gcgcgccggt
     1381 agacttccgc cgccagcaac attcccaccg gcggcgcgag gaaatagatc cagagtgaca
     1441 tccagacgtc agcgccaaat gcggagctga aggttcgtgc cgggttcatg ctcatgcctg
     1501 aaattggcga ctcgatcgtg atgtagatcg cgacgagggc accggcgaac attccggtcc
     1561 accgtcccaa tc
//
LOCUS       DASWTX010001430         1896 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_432900, whole genome shotgun sequence.
ACCESSION   DASWTX010001430 DASWTX010000000
VERSION     DASWTX010001430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1896)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1896)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1896
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_432900"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..499)
                     /locus_tag="VGD38_21760"
     CDS             complement(<1..499)
                     /locus_tag="VGD38_21760"
                     /inference="COORDINATES: protein motif:HMM:NF012730.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006811 - monoatomic ion transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ion transporter"
                     /protein_id="HEY0730727.1"
                     /translation="MSGHSHERVPAAERPSTRRRARLHEVIFESDTRAGRFFDLTLIW
                     LILLSVATVILESVREVREQYGAPLYALEWVFTLLFTIEYGLRLLSVRRPLRYATSFF
                     GIVDLLAIVPTYLSVFVPGSQYLLVIRILRLLRVFRLLKLSEYVSEADTLKRALRASR
                     RKISVF"
     gene            complement(510..>1896)
                     /locus_tag="VGD38_21765"
     CDS             complement(510..>1896)
                     /locus_tag="VGD38_21765"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY0730728.1"
                     /translation="TDDELVEFIREEKIGLVGIGAMTRMLAKAYRVADAIRLIGVPVV
                     FGGPHVTEVPDEALGRDGGTRHADAVALGEADETWPLIVNDAANGQLKEVYQPARDAK
                     GIDRKPALQPYPSVPWETLDLDQFNLVPKFLRRGMSRIGNGWGAFHVVPIETGRGCPY
                     GCEFCTVTGFFGDSIRFRTNESVVEELLRLKARARRERGQIAVFFIDDNLAINIKRTK
                     SLLRDIIAAKAQMPWVAQISANLLRDEELVDLVAESGGKWVFIGMESIDPANMADVNK
                     NFSKPSEYGAVLERLAKRNVYAITSFIFGMDNDTKGIAKRTLDAIRSWPPGLPVFGQL
                     TPFPATPLYDRLEKAGRLTRPKHWLDFAPFAMAHNPLKMTIAEARTETEYAWASSYSP
                     SRNAEVVSASKDYPLACRLNHLIARLFFRGIYFPQLGWRAWLRVIAQNRKPIASLTLE
                     ALKAVVKSAKR"
BASE COUNT          446 a          569 c          482 g          399 t
ORIGIN      
        1 taaagacact gattttgcgt ctgctcgcac gaagagcacg cttgagtgtg tcggcctccg
       61 aaacgtattc cgatagcttc agcaagcgaa acactcggag caaacgaagt atgcgaatca
      121 ccaggagata ctgactgccc ggcacgaaga cactcaggta cgtcggaacg atcgcgagta
      181 gatcgacaat cccgaagaaa ctcgttgcgt accgcagtgg gcgccgcacg ctcaataatc
      241 gaagtccgta ttcaatcgtg aatagtagag tgaataccca ctcgagtgcg tagagcggcg
      301 cgccatattg ctctctgact tcgcggacgc tttcgagaat aactgttgct acgctaagca
      361 ggatcagcca gatcagcgtg agatcaaaga accggccggc acgcgtgtcc gattcgaaaa
      421 tgacttcgtg cagccgtgca cggcgcctgg tagacggacg ttccgccgct ggaacccgtt
      481 cgtgcgagtg tccgctcatt ctcgaaccct tacctctttg cgcttttcac aacagccttc
      541 aaagcctcaa gcgtcaacga agctatcggt ttacgattct gagcgatcac gcgtaaccac
      601 gcacgccatc caagctgcgg aaaatagatc ccgcggaaaa acagacgcgc tatgaggtga
      661 ttcaaccggc acgccaacgg gtaatcttta cttgcactga cgacctccgc atttcggctt
      721 gggctatacg acgaagccca cgcatattcg gtttcggtcc gagcttcagc aatcgtcatc
      781 tttaacggat tgtgggccat cgcgaacggc gcaaaatcca accagtgttt cgggcgggta
      841 agccggccag ccttttcaag ccgatcataa agcggggtcg caggaaaagg cgtgagttgt
      901 ccaaatacgg gcaggcccgg cggccacgaa cgaatcgcat ccaaagtacg cttggctatg
      961 cccttcgtat cgttatccat accaaagatg aacgacgtga tagcgtagac atttcgttta
     1021 gcgagccgtt ccagaacagc gccatactcc gaaggcttgc tgaagttctt attcacatca
     1081 gccatgttcg cgggatcgat cgattccatg ccgatgaaga cccatttacc tcccgactcg
     1141 gctacgagat ctaccagctc ttcgtcgcgc aacaggttcg cactaatctg agcgacccac
     1201 ggcatctgcg ccttagcggc gatgatgtct ctcaacagcg acttcgtgcg tttgatattt
     1261 atcgcgaggt tatcgtcgat gaagaagacc gcgatttgac cacgttcgcg ccgggcccgc
     1321 gctttcagcc gcaacagctc ttcgacgaca ctctcgttag tacgaaagcg aatcgaatcg
     1381 ccgaagaacc cggtcactgt gcaaaactca caaccgtacg gacagccgcg gccggtttcg
     1441 ataggcacaa cgtgaaacgc tccccaaccg tttccgattc tcgacatgcc gcgacgcaag
     1501 aattttggga ccagattgaa ctggtccagg tcgagcgttt cccacggcac cgaaggatac
     1561 ggctgcaacg caggcttacg gtcaatcccc tttgcatctc gcgcgggctg atagacttct
     1621 tttagttgac cgttcgcagc atcgttcaca atcaacggcc acgtttcatc agcttcgccc
     1681 agcgccactg catcggcgtg ccgcgtgcca ccgtcgcgtc ccagcgcttc gtccggaact
     1741 tctgtgacgt gtggtccgcc aaaaacgacc ggcacaccga tcagccggat cgcatcagcc
     1801 acgcggtaag ctttcgcaag catgcgcgtc atcgcgccga taccaaccag gccgattttt
     1861 tcttccctga tgaactcaac caactcgtcg tcggtc
//
LOCUS       DASWTX010001431         2334 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_150300, whole genome shotgun sequence.
ACCESSION   DASWTX010001431 DASWTX010000000
VERSION     DASWTX010001431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2334)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2334
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150300"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..509)
                     /locus_tag="VGD38_21770"
     CDS             complement(<1..509)
                     /locus_tag="VGD38_21770"
                     /inference="COORDINATES: protein motif:HMM:TIGR00924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015333 - peptide:proton symporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide:H+ symporter"
                     /protein_id="HEY0730729.1"
                     /translation="MATQTPPPITELEEANIVEPPDFAGHPRGLGTLFFTELWERFSY
                     YGMRSILILYMTSAATQGGLGFSVKDAASIYGTYTMSVYLTALPGGLIADYVTGARLA
                     VFIGGIIIAAGHFSMVFQSMTTFYLGLILISVGTGLLKPNISTMVGGLYRQNDPRRDS
                     GFSIFYMGI"
     gene            635..1729
                     /locus_tag="VGD38_21775"
     CDS             635..1729
                     /locus_tag="VGD38_21775"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY0730730.1"
                     /translation="MTLHAQSGRKSPKTEPPPAKTPTPAGAATPAESDVNESKVNPEG
                     ETVEGDVIRTDTALVTVPVTVLDRNGRYVPQLRREQFRIMENGVEQKIAYFATTDSPF
                     TVILLIDTRGSTQWRLDDIQDAAISFVSKLKPNDSVMVMSFDDRIEVECKPTTDRNEI
                     DRAIRSTRTGGGTRLYDAVEDILKKHLKTISGRKAVVLFTDGVDTTSRRGTYDSTIRL
                     AEESDAPIYSVDYDTSGTVMSGSGIPQGGGPTILGIPLPRPGLPGGTVPGSSPGDYRR
                     AVRYLKELSNKTGGRFYSGDSLFGIRQAFAWIAEELGRQYSLGYYPSVAGKQGERRQI
                     KVRMTEADLVVKSRESYIYSEPQKGAKDSK"
     gene            complement(1690..>2334)
                     /locus_tag="VGD38_21780"
     CDS             complement(1690..>2334)
                     /locus_tag="VGD38_21780"
                     /inference="COORDINATES: protein motif:HMM:NF014433.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015446 - ATPase-coupled arsenite
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0071722 - detoxification of
                     arsenic-containing substance [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRC40/GET3/ArsA family transport-energizing
                     ATPase"
                     /protein_id="HEY0730731.1"
                     /translation="MEIQFDREAMRELVELTPPGIDEIAALGKISELLDENRYDSIIL
                     DTAPTGHLIRFLELPEVALSWIRTFMKLLLKYQNVVRATEVAEELVALSKSIKRVLAL
                     LTDQESCEFVAVAIPERMSLEETSDLAKSLDKLKVPLRKLLINGVVSEDAAKQCRFCK
                     ARRKGQMEVADEFCKKFRRRSIELFLAPQQPHEITGAKALQNHFESLAPFCGSE"
BASE COUNT          519 a          692 c          648 g          475 t
ORIGIN      
        1 ttgatgccca tgtagaagat cgaaaaaccg ctgtcgcggc gcggatcgtt ctggcggtag
       61 agtccgccaa ccatcgtgct gatgtttggt ttcaggagac cggtaccgac cgagatgagg
      121 atcaatccca ggtagaacgt cgtcatcgat tgaaacacca tcgagaagtg gccggccgca
      181 atgatgattc cgccgataaa taccgccagc ctcgcgccgg tcacgtagtc agcgatgagt
      241 ccgcccggca gggctgttag gtaaaccgac atcgtgtagg tgccgtagat cgacgccgcg
      301 tccttcacgc tgaagccgag accgccctgc gttgcggccg aggtcatgta aaggatcagg
      361 atggagcgca tgccgtagta actgaaacgc tcccagagct cggtaaagaa gagcgtgccg
      421 agaccgcgtg ggtggcccgc aaaatcgggt ggttcgacga tgttggcttc ttcgagttcg
      481 gttatgggtg gtggtgtttg ggtcgccata aatgcgccgc aatatatccc gccgggccgg
      541 gaaacttcaa accttatctg ggcatctatc cgtcaaatcc gtgttaccca aaagacctac
      601 cctacttttg ctcgtctttt tcctggtgct ccctttgact ttgcacgccc agtccggacg
      661 taagtcacca aaaactgaac ctcctcctgc aaaaactccg actccggctg gtgctgctac
      721 tcctgccgag tccgacgtta acgagtcgaa ggttaatccc gagggcgaga ctgtcgaagg
      781 cgatgtgatc cgcacggaca cggcgctcgt cacggttccc gtgaccgtgc tcgatcgtaa
      841 cggccgctac gtcccgcaat tgcgccgcga acagttccgg atcatggaga acggcgtcga
      901 acagaagatc gcctacttcg ccaccacgga ttcacctttc acagtcattc tcctgatcga
      961 cacccgcggc tcgacccagt ggcgcctcga cgacatccag gacgccgcaa tcagcttcgt
     1021 cagcaaactg aagccaaacg acagcgtgat ggtgatgtcg ttcgacgacc ggatcgaggt
     1081 cgaatgcaaa ccgaccacag atcgcaacga gatcgataga gcgatcagaa gcacgcgcac
     1141 cggcggcggc acacgcctct acgacgcagt cgaagacatt ctaaagaaac acctcaagac
     1201 gatctccggc cgcaaagccg tggtgctgtt taccgacggc gtcgacacaa cgagccgccg
     1261 cggcacgtac gacagcacga ttcgtctcgc cgaagaatca gacgcgccga tctactcagt
     1321 cgactacgac acatccggaa cggtgatgtc cggcagcgga attcctcaag gcggcggccc
     1381 gacgattctc ggcataccgc tcccgcgtcc cggacttccc ggcggcacag ttcccggctc
     1441 atcacccggc gattacagac gcgccgtgcg ctacctgaaa gagttgtcga acaaaaccgg
     1501 cggacgtttc tacagcggcg attcgttgtt tgggatacgg caggcgttcg cgtggatcgc
     1561 ggaagagttg ggccggcaat acagtttggg atattacccg agtgtcgcgg gcaaacaggg
     1621 cgagcggcgg cagatcaaag tgagaatgac tgaggcggat ttggtcgtga agtcgcgcga
     1681 gagttacatc tactcggagc cgcaaaaggg cgctaaagac tcaaagtgat tttgcagtgc
     1741 tttcgcgccg gtgatttcgt ggggttgttg cggcgcgagg aagagttcga tcgaacgccg
     1801 ccggaatttc ttacaaaact catcagccac ttccatttgt cctttgcgcc gcgctttgca
     1861 gaagcgacac tgcttcgccg cgtcttccga gacgactccg ttaatcaaca acttccgcaa
     1921 cggcactttt aatttatcca gcgacttcgc gagatcgctc gtctcttcga gactcatccg
     1981 ttccgggatc gccactgcga caaactcaca cgactcctga tcggtgagta acgcgagcac
     2041 tcgcttgatg ctcttcgaca gcgcgaccag ttcttcagcg acttccgtcg cgcgcacgac
     2101 gttctgatat ttcaacagca acttcatgaa cgtcctgatc cacgagagcg cgacctccgg
     2161 cagttcgaga aagcggatca ggtgtcctgt cggcgcggtg tcgagaatga tcgagtcgta
     2221 acgattctcg tccaataatt cgctgatctt cccgagcgcg gcgatctcgt cgatacctgg
     2281 cggcgtcaat tcaaccaact cgcgcattgc ttcacgatca aactggatct ccat
//
LOCUS       DASWTX010001432         2172 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_20552, whole genome shotgun sequence.
ACCESSION   DASWTX010001432 DASWTX010000000
VERSION     DASWTX010001432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2172
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20552"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1189)
                     /locus_tag="VGD38_21785"
     CDS             complement(<1..1189)
                     /locus_tag="VGD38_21785"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF013206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HEY0730732.1"
                     /translation="MTGGQPLSVEAGLRMLQRGGNAVDAGVATILAASVIEFSHFSFG
                     GEVPILIKPKGQKVVVIEGMGQAPMKATREFFVNRRNESDSGTTMPGARRGGMIPSTG
                     PLSATVPAVLDACVTALDQYGTKTLGEVMEPAIQLADGFPLDELRVQYIRTRSSIFSQ
                     WPDAKRVFLPNGEVPKVGDIFVQADLARTLREIVRAEKLAARGTRNNRHAGLMAARDY
                     FYRGPIARRIGAYMQANGGLIAADDFAKFQATVGQPVFAEYRGYQVYKAGFWTQGPAM
                     VETLNMLEGFDLKKMGHNSTEYIHTLAEALKLALADRDRYYGDPNFVKIPMAELLSKN
                     YAALRRPLIDQQRASLAQLPGDPMNMKAVLASAVQTIGRTTNVPELERANDTTCVNVI
                     DKDG"
     gene            1664..>2172
                     /locus_tag="VGD38_21790"
     CDS             1664..>2172
                     /locus_tag="VGD38_21790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730733.1"
                     /translation="MSHSPKIAPYGSWKSPITSDLIVSGSVGLSQPTFDGDNIYWVEM
                     RPTEGGRNVIVRRDPSGAVTSLTPQPLNARTRVHEYGGGDYIAVNGVVYFSNFVDQRV
                     YRQDGTAEPRAITPAEQVRYADYCFDPTRSRLICVREDHRNPDVEAANCIVSLDTENN
                     DECGRVLIKG"
BASE COUNT          469 a          634 c          621 g          448 t
ORIGIN      
        1 taccgtcttt atcgatgacg ttaacgcagg ttgtgtcgtt ggcgcgttcg agctcgggaa
       61 cgttggtggt ccggccgata gtttgcaccg cgctcgcgag cacggctttc atgttcatcg
      121 gatcgccggg cagttgcgcg agcgaagcgc gttgctgatc gatcaacgga cggcgcaacg
      181 cggcgtagtt tttcgacaac aactcggcca tcggaatctt tacgaaatta ggatcgccgt
      241 agtaacgatc gcgatccgcc agcgcgagct tgagtgcttc ggcgagcgtg tgaatgtatt
      301 ccgtcgagtt gtggcccatc ttcttcaagt cgaaaccttc gagcatgttc agtgtttcga
      361 ccatggccgg gccctgcgtc cagaaacctg ccttgtagac ctggtaaccg cgatactccg
      421 cgaacaccgg ctgcccgact gtggcctgga acttggcgaa atcgtccgcg gcaatcagac
      481 cgccgttcgc ctgcatgtac gcgccgatgc ggcgggcgat cgggccgcgg tagaagtagt
      541 cgcgtgcggc catcagtccc gcgtgacgat tgttacgcgt cccgcgcgcc gcgagctttt
      601 ccgcgcgcac gatctcgcgc agcgttcgcg caaggtcggc ctgcacgaag atgtcgccga
      661 ctttcggcac ttcgccgttt ggcaggaaaa ctcgtttggc gtcaggccat tgcgaaaaga
      721 tcgaggagcg cgttcggatg tattgcacgc gcagctcgtc gagcgggaaa ccgtcggcga
      781 gttgaatcgc cggttccatc acttcgccca gtgtttttgt tccgtattga tcgagcgcgg
      841 tgacacacgc gtcgagaacg gccggcactg tggcggaaag cggaccggtc gaaggaatca
      901 tgccgcctct ccgtgcgccc ggcatcgtcg taccggaatc ggactcattg cggcggttaa
      961 cgaaaaactc gcgcgtcgcc ttcatcggcg cttgtcccat gccttcgatc acgacaacct
     1021 tctgaccctt tggcttaatc agaatcggaa cctcgccgcc gaaagagaag tgcgagaact
     1081 cgatgaccga agcagcgaga atcgtagcca cgcccgcgtc aacggcgttg ccgccgcgct
     1141 gtagcatgcg cagcccggcc tcgaccgaaa gcggttgtcc gcccgtcacg acgccacgtt
     1201 tcccgcgtac tacagggcga aaagtgtcag cctcggttgt gattgatact ggaaaaccgg
     1261 caaatatgaa ggacagggcg aggcaaaaca cgatcgtgct tcgtttcgag aaggacatct
     1321 acgccacctc tttcgatttt ttgactcgtg aattctgcga ctgctttccg gtcgcagtca
     1381 atagacaaga aactttttct caggagaaac ccggagtgct ggtaagatta attcagacaa
     1441 aaagagaggg cactgacctc ccccaagacc agtgcccttg cctttatctc agttctccca
     1501 tggagaatta acgacgggca gatactagcc gtccgaagga aaacgtaggt tgcatacatc
     1561 ttgtaaagcc tttgcggctg tgtaactaaa acttttccaa agtttcacga cgcacgaaaa
     1621 cgagagattt cgaaccaaat tcggcaggag cagaggactc agcttgtcac actcaccaaa
     1681 gattgcgcca tacggctcgt ggaaatcccc tattacttca gacctcatcg tcagcggctc
     1741 agtgggcttg agccagccga ccttcgacgg cgacaacatc tactgggtgg aaatgcgccc
     1801 gactgaaggc ggcagaaacg tgattgttcg ccgcgatccg agcggcgccg tgaccagtct
     1861 gacgccgcaa cctctcaacg cccgcacccg tgttcacgaa tatggtgggg gcgactacat
     1921 cgccgtgaac ggcgtcgttt acttttcaaa cttcgtggac cagcgcgttt accggcagga
     1981 cgggacagcc gaaccgcgcg caatcacgcc cgccgaacag gtgcgctacg ccgattattg
     2041 tttcgacccg acacgcagcc gtttgatctg cgtgcgcgag gatcaccgaa accccgatgt
     2101 cgaagcggcg aactgcatcg tcagtctgga tactgaaaac aacgacgaat gcggccgtgt
     2161 gctgatcaaa gg
//
LOCUS       DASWTX010001433         2007 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_20673, whole genome shotgun sequence.
ACCESSION   DASWTX010001433 DASWTX010000000
VERSION     DASWTX010001433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2007
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20673"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..823
                     /locus_tag="VGD38_21795"
     CDS             <1..823
                     /locus_tag="VGD38_21795"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY0730734.1"
                     /translation="IYRLLRNKADNPVQLTVNKTPSMQGSRTVSYRPITDEQNLMYLD
                     WVDHNREMVSKATGGRVGYLHVPDMGAAGIREFIKWYYPQLRKEGLIVDVRANGGGNV
                     SRMLIERLRRKLLGVTYARTTDDGSTYPDGVFIGPMAALLDENSASDGDIFPSMFREA
                     GLGPLIGKRSWGGVVGITNRGPLIDGGSVSVPEFGLANTKGEWIIEGYGVDPDIEVDN
                     DPQSVLAGKDPQLERAIAEVMARLKNPVKLPSRPAPPVKTNTDRRTSKATEQGRN"
     gene            complement(844..1473)
                     /locus_tag="VGD38_21800"
     CDS             complement(844..1473)
                     /locus_tag="VGD38_21800"
                     /inference="COORDINATES: protein motif:HMM:NF017496.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Uma2 family endonuclease"
                     /protein_id="HEY0730735.1"
                     /translation="MALYLEAEMQALATSDQVNFSPLHRRYTLEEFWALPEREDRVRY
                     NLIGGYLFMVPPPNPPHGDLDGRLNTSLVVFLAANKLKGLVHHPPEPIYIRAEGSTYL
                     EPDMMYVSDALRQRMGSKRTSADIVFEYLSRSTSVYDRTTKADTYLLLGVRELWLVDP
                     VTETIEVRHPKEHRDTLVWEIYIYSKGEHAKSRVLDGWEVSVDEIFQDV"
     gene            complement(1490..1942)
                     /locus_tag="VGD38_21805"
     CDS             complement(1490..1942)
                     /locus_tag="VGD38_21805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730736.1"
                     /translation="MSILTRLTGYRPNFCCECGNKIVRLRWFVWTSRRFCDKCARSFA
                     KSHWLRASITITVFFLGAVLLGRGCRRAPPPLIIERPVSSSTTSGAADSTTPNAPQAT
                     PAPEQLYTCGARTKKGTPCSRRVHGPVRCWQHKGAKAMVPQEKLVIKE"
BASE COUNT          421 a          523 c          605 g          458 t
ORIGIN      
        1 tatttatcgc ttgctgagaa acaaggccga caatccggtt cagctcacgg tcaacaaaac
       61 gccgtcgatg cagggctcgc gcacggtgtc gtatcgtccg attaccgacg agcagaacct
      121 gatgtatctc gattgggtcg atcacaatcg tgagatggtg tcgaaagcga ccggcgggcg
      181 tgttggttat ttgcacgtgc ctgacatggg cgcggccggt attcgtgaat tcatcaagtg
      241 gtattacccg caactgcgca aggaaggttt gatcgtcgac gtgcgtgcga acggcggcgg
      301 taatgtttcg cgcatgttga ttgaacgttt gcgacgcaag ttgctgggcg tcacttacgc
      361 gcgcacgact gatgacggtt ctacctatcc ggatggtgtt ttcattggtc caatggcggc
      421 gttgcttgat gagaactccg cttctgacgg cgacatcttc ccgtcgatgt tccgcgaagc
      481 cggtcttggt ccattgatcg gcaaacgttc gtggggcggt gttgtgggaa tcacgaatcg
      541 tggtccacta atcgatggtg gatcggtgag cgtgccggag tttgggctgg cgaatacgaa
      601 aggcgagtgg attatcgaag gctacggcgt tgatcccgac attgaagtcg ataacgatcc
      661 gcagtcggta ctcgccggca aagatccgca gctcgaacgc gcgatcgccg aggtcatggc
      721 gcgtctaaaa aacccggtga agctgccatc gaggccggcg cctccggtga agacaaacac
      781 cgatcgccgc acgtcgaaag caaccgagca gggccggaac taaccggccc cggttcgttc
      841 tcgttagacg tcctggaaga tctcgtcaac tgaaacttcc caaccgtcga gcacgcgaga
      901 tttcgcgtgc tcgccttttg agtagatgta gatttcccac accaatgtgt cgcggtgttc
      961 tttcggatgc cgcacttcga tcgtctcggt gaccggatcg acgagccaga gttcgcgcac
     1021 gccgagcaag aggtacgtgt cggctttcgt cgtgcggtcg tacacgcttg tgcttcgtga
     1081 caggtattcg aagacgatgt ctgcggaagt gcgtttcgaa cccattcgct ggcgtagagc
     1141 gtctgaaaca tacatcatgt cgggttcgag ataagttgaa ccttcggcac ggatgtaaat
     1201 cggctctggc ggatggtgaa cgagaccttt aagtttgtta gccgcaagga aaaccacgag
     1261 tgacgtgttc agtctgccat cgaggtcccc gtgaggcggg ttaggtggcg gaaccataaa
     1321 caaatatcct ccaatgaggt tgtagcgcac acgatcctcg cgttcaggca aggcccaaaa
     1381 ctcttcgagt gtgtagcgcc ggtggagtgg tgagaaattg acctgatcag atgttgctaa
     1441 agcttgcatc tcggcctcca aatagagagc catagtagca cgcctccttt cattctttta
     1501 tgactagctt ttcctgaggc accattgcct tcgcgccttt gtgttgccag cagcgcaccg
     1561 gtccatggac gcggcgcgag catggtgtgc ctttctttgt gcgcgcgccg caggtgtaaa
     1621 gctgttcggg cgctggcgtg gcttgaggtg cgtttggtgt tgttgagtct gccgcgccgg
     1681 aagtagtgct cgaactcacc ggacgctcga tgatcaatgg tggtggtgca cggcggcagc
     1741 cgcgtccgag caacaccgcg ccgaggaaga aaacagtgat agtgatcgat gctcgcagcc
     1801 agtgtgactt ggcaaacgag cgtgcgcact tgtcgcagaa acgcctgctg gtccaaacga
     1861 accagcgcag ccgcacgatc ttgttgccac actcgcaaca gaaatttgga cgataacccg
     1921 tgaggcgggt gagtattgac atgttgtgag gttcctttcg ttacgaacgc ccgcattata
     1981 cgcctgaaac gcctccgaaa tccctcg
//
LOCUS       DASWTX010001434         1576 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_20675, whole genome shotgun sequence.
ACCESSION   DASWTX010001434 DASWTX010000000
VERSION     DASWTX010001434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1576
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20675"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..942)
                     /locus_tag="VGD38_21810"
     CDS             complement(<1..942)
                     /locus_tag="VGD38_21810"
                     /inference="COORDINATES: protein motif:HMM:NF025690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4388 domain-containing protein"
                     /protein_id="HEY0730737.1"
                     /translation="MTGQLSEQPLAELIRELSVKSLAGKLQLEHDRVKVVIYLDNGEL
                     LYAAANVRTLRLREYLLKAGINEAALARYGERRPDLELAKALVTDQLLTPASAEQIQT
                     KQVTDVLRLALSWTEGVWEFDQRARLDEETKLNIDIRGLLIESARRVPPKFASSRFGL
                     PTESISPVSTALEFTNLLPTEVFILSRLDRPTPLQELIAVSGTGENEAFVVIYSLALA
                     GLIEREHWNENIRGQRVAVQPEPEKPAPPTPPPPPVPEQKPEEDVESFLERLQQAQTH
                     YDVLDVTRESSPAQMKVKYYELARRYHPARFRRADPSI"
     gene            1069..>1576
                     /locus_tag="VGD38_21815"
     CDS             1069..>1576
                     /locus_tag="VGD38_21815"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEY0730738.1"
                     /translation="MSETARKSVDRAPEPDEAAAGTEIPPQTVEELIAELRKRSAELE
                     EANRELRRVSHYRSLFLARMSHELRTPLTSILGFSEILLDQEELTETQRRFCQKVQDS
                     GFQLQASLNQLVDLSRIEAGQTEVFLQEFPLRETLRESVAAAGRMAHKQQVKIDYEVA
                     PEITTVVSD"
BASE COUNT          328 a          423 c          477 g          348 t
ORIGIN      
        1 tattgacgga tcagcgcggc gaaatcgagc cggatggtaa cgccgcgcga gctcgtagta
       61 tttgaccttc atctgcgccg gtgaagattc tctggtcacg tcgagcacgt cgtaatgcgt
      121 ttgtgcctgc tgaagtcgtt cgagaaagct ttcgacgtct tcttccggtt tttgttccgg
      181 aactggtgga ggaggcggcg ttggtggcgc tggtttttcc ggttcgggtt gaactgccac
      241 gcgctggccg cggatgtttt cgttccagtg ctcgcgttcg atcagtccgg caagcgcgag
      301 tgaatagatg acaacgaagg cttcgttctc gccggtgccg ctcacggcga tgagctcctg
      361 caaaggcgtc gggcggtcga gccgggaaag aataaagact tccgtcggca acaggtttgt
      421 aaattcgagg gccgttgaga caggcgagat actctcggtt ggaaggccaa agcgcgacga
      481 ggcaaacttc ggcggcaccc gccgtgcgct ctcgatgagc aaaccacgaa tatctatgtt
      541 gagttttgtt tcttcatcca gacgcgcccg ctgatcgaat tcccacacgc cttctgtcca
      601 cgaaagcgcg agacggagca cgtccgtgac ctgtttggtt tgaatctgtt ctgcgcttgc
      661 gggcgtgagt aactggtctg ttacgagagc tttcgcaagt tcgaggtccg gccgccgttc
      721 cccataacga gccagggctg cttcgtttat cccggctttt aacaggtact cgcgcagccg
      781 cagcgtgcgc acgtttgccg ccgcgtaaag cagttcgccg ttgtcgagat agatgacaac
      841 cttgacgcgg tcgtgttcga gttggagttt tccggcgagg gatttgacgg atagttcgcg
      901 aattagttcc gccagcggct gctcgctcag ttggccagtc atctcggcca catcctaaac
      961 gaaaaaagat gggctttgac agtcgcggag acggattcta tagtgatgcc acattacaat
     1021 ctctgttcga cccccgagga tgaagcgtct tcaagcaggt tgaggtctat gagcgaaaca
     1081 gcacgtaaaa gtgtcgacag agcaccagaa ccagacgaag cggctgcggg cacggaaatc
     1141 ccgccgcaaa ccgtcgaaga actgattgcc gaactacgaa aacgttccgc ggaactggaa
     1201 gaagccaacc gtgaactgcg gcgggtctcg cactaccgtt cgctgtttct ggcgcggatg
     1261 tcgcacgaac tccgcacgcc gctgacgtcg attctcggtt tcagcgaaat cctgttggat
     1321 caggaagaac tgaccgaaac acagcgccgc ttttgccaga aggttcagga ttccgggttt
     1381 cagctgcagg cgagtctgaa ccaactggtc gatctgtcgc gaatcgaggc cggccaaacc
     1441 gaagttttcc tgcaggagtt tccgttgcgc gaaacgttgc gcgagtcagt cgcggctgcc
     1501 gggcgtatgg ctcacaagca gcaggtgaag atcgactacg aagtcgcgcc ggagatcacg
     1561 acggtcgtct cggatc
//
LOCUS       DASWTX010001435         2714 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_193971, whole genome shotgun sequence.
ACCESSION   DASWTX010001435 DASWTX010000000
VERSION     DASWTX010001435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2714)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2714)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2714
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193971"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2252)
                     /locus_tag="VGD38_21820"
     CDS             complement(<1..2252)
                     /locus_tag="VGD38_21820"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY0730739.1"
                     /translation="MPIAAQQTTGSLKGTVTDQLDSLIVGATVTVKSANGVVTSATSN
                     SSGVYEFKRLAPGTYDLKVIAPGFTVFEEKSIEIRPRETHTFNAQLSVAFENQEVTVD
                     DRNLSTDSDNNAGAVVLRGRDLEALPNDPQALMAALQALAGPTDPEGGGAQVKVDGFS
                     NGQIPPKEAIREVRVNNNPWSAENEFPGWGGIEIFTQPGADKWHGSVNFDFNDESLNS
                     RNPYTTFRAPYQQRAYNFSLSGPIIKKRASFSAFFGRYLSDANSVVNATTLDLDTLEP
                     VSVNQSFVTPEENTYSNVRGDLKINSKHTLVGRANYNLSTQDLQGIGGFSLPTRAFRG
                     RRSNFTLQLIETAMLNEKTINETRFQWIRSRFNQSSVLNAFALNVLDSFFGGGAQVGS
                     SSNEQERFELQNFTSWTTGNHFLKVGGRIRNVSIESISPGNFGGTYTFSGGPGPLLDE
                     NDQVVPGPGGQPQIVQVSSLERYRRTLAFQRALMSPAQIRLLGGGATQFSIAGGDPQA
                     NVKQWDISFYIQDEWKIRPNFTLSPGLRYENQNNVDSDFDFAPRISFAWSPVFGKKKA
                     PEAAATAKPATPATPGATPAPAAAPAAAAAPAGPPKTVFRGALGYFYNRVSEEITLQS
                     IRFDGIHQQQFLVTDPAVLNLFPLVPPIDLLDDFEQPQIRRVKSDDLRASRSFRAMFA
                     MERLLPKNIKLSINYFYSRTDRLLRIVNINAPLGGTFIPGLPNSGVRPLGADAGNIFE
                     YQPTGKSIGNT"
BASE COUNT          524 a          720 c          872 g          598 t
ORIGIN      
        1 gtgttgccga tcgatttgcc cgtcggctgg tactcgaaga tgtttccggc gtcagcgccg
       61 agcggccgca cgccgctgtt tggcaggcca ggaatgaatg ttccgccgag cggcgcgttg
      121 atgttcacga tgcgtagcag acgatccgtg cggctgtaga aatagttgat cgagagcttg
      181 atgttcttcg gtaacaggcg ctccatcgcg aacatcgcgc ggaacgatcg cgacgcgcga
      241 agatcgtctg acttgacgcg gcggatctgc ggctgctcaa agtcgtcgag cagatcgatt
      301 ggcggcacga gcgggaacag attgagaact gccggatcgg taacgagaaa ttgttgctgg
      361 tgaatgccgt cgaacctgat cgactggagt gtgatctctt cggaaacgcg attgtagaag
      421 taaccgaggg cgcctctgaa aactgtcttc ggtggaccag cgggcgccgc ggcagctgcg
      481 ggcgcggccg ctggtgcggg tgttgcgccg ggcgtggctg gtgttgccgg tttcgcggtt
      541 gccgcagctt cgggtgcttt cttcttgcca aacacaggtg accacgcaaa cgagatgcgt
      601 ggcgcgaagt cgaagtcgct gtcgacgttg ttctggttct cgtaacgcag acccggcgag
      661 agcgtgaagt ttggtctgat tttccactcg tcctgaatgt agaacgagat gtcccactgc
      721 ttcacgttcg cttgcggatc gccgcccgcg atcgaaaact gcgtcgcgcc gccgccgagc
      781 agcctgattt gcgcggggct cattagcgcg cgttgaaaag caagcgtgcg gcgataacgt
      841 tcgagactgc tgacctggac gatctgcggt tggccgcccg gtccgggcac gacctgatcg
      901 ttttcgtcga gcagtggtcc aggtccgccg gaaaaggtgt aagtgccgcc aaagtttccc
      961 ggcgagatgc tttcgatcga cacgtttctg atgcgcccgc cgactttcag aaaatgattg
     1021 ccggtggtcc acgacgtgaa gttctgtaat tcgaagcgct cttgttcgtt tgacgacgaa
     1081 ccgacttggg cgccgccgcc gaagaacgag tcgagcacgt tcaaggcgaa ggcgttcagc
     1141 acgctcgatt ggttgaaacg acttcggatc cactgaaagc gcgtttcgtt gatggtcttt
     1201 tcgttgagca tcgcggtctc gatcaactgc aacgtgaagt tactgcgccg cccgcgaaac
     1261 gcacgtgtcg gtaacgagaa cccgccgatg ccttgcaggt cctgcgtcga aaggttgtag
     1321 ttggccctgc cgacgagcgt gtgcttgctg ttgatcttga gatccccgcg aacgttgctg
     1381 tacgtgtttt cttccggcgt cacgaatgat tggttgacgc tgacgggttc gagcgtgtcc
     1441 agatcaagtg tcgtggcgtt gacgacggag ttggcgtcgc tgagataacg gccgaagaat
     1501 gccgagaacg acgcgcgctt tttgatgatt ggaccactga gactgaagtt gtaagcgcgc
     1561 tgttggtaag gcgcgcgaaa cgtcgtgtaa gggttgcggg agttcaggct ctcgtcgttg
     1621 aaatcaaaat taaccgagcc gtgccacttg tccgcgcccg gttgcgtgaa gatctcgatg
     1681 ccgccccaac cgggaaactc gttctcggcc gaccacggat tgttgttcac gcgcacttcg
     1741 cgaatggctt ccttcggcgg gatctggccg tttgagaagc cgtcgacctt gacttgggcg
     1801 ccgccgcctt cgggatctgt gggaccggcg agagcctgca acgccgccat cagcgcctgc
     1861 ggatcgtttg gcagtgcttc gagatcgcgg ccgcgcaaga ccacagcgcc agcgttgttg
     1921 tcggagtcgg tgctgaggtt gcgatcgtcg acagtgactt cctggttttc aaaggcgacg
     1981 gagagttggg cgttgaacgt gtgtgtctcg cgcggtctta tctcgatcga cttctcttcg
     2041 aagacggtga aacccggcgc gatcactttc aggtcgtacg tgcccggggc gaggcgttta
     2101 aactcgtaga cgccggaaga gttgctggtg gcgctggtca cgacgccgtt ggcgcttttg
     2161 acagtgacag tcgcgccgac aatcagactg tcgagctggt ctgtgaccgt gcctttgagc
     2221 gagccggtgg tttgttgggc cgcgatgggc acagcaaggg cgcagatgag aattgcgcaa
     2281 cgcaggagga acatgacagt tagtgaacct gagccaccaa aagtttcaag acgaaacgct
     2341 tacacgttac ggcctgctgc tcgttgcaaa aaccgatcgt acgccgaagg cgcgtgcacg
     2401 accaccgggt caacgccgaa ggcgcgtgtc acgccgggtt aacgccgaag gcgttcgcca
     2461 attgcagccc agggttggag ctttgcgaca accctgggga accatgaaaa aaaagcgttg
     2521 tcaacgctga aagcgttggc gaatttagct gcgacgtttg ccaacacctg cggcgttggt
     2581 ctttctttcg tttacttcct cccagggttg aagcaaccct gatgttatga agcagcgcct
     2641 ccgttcgtga gtgctagact cacgagcagc tctgttgaca tggagactga aaggaggcgc
     2701 tgtgcagaaa atat
//
LOCUS       DASWTX010001436         2530 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_194065, whole genome shotgun sequence.
ACCESSION   DASWTX010001436 DASWTX010000000
VERSION     DASWTX010001436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2530
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194065"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1724
                     /locus_tag="VGD38_21825"
     CDS             <1..1724
                     /locus_tag="VGD38_21825"
                     /inference="COORDINATES: protein motif:HMM:NF013279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEY0730740.1"
                     /translation="AATAGATVEKMKNRASSHLLLILLILGLEITGYIAIHRAGLLRG
                     YETSVIGAVRDLLMFVPLMMVAIWLSRYKRFAGNWVLFSTAILLFAFGMLIQYRLYSD
                     PEYNARNKAAAREEKMQALRTRYIMENYDPVKKQLMGLPPTPAQPIDIDQLPKRESTY
                     SLWNALTSSYTWIPIFSFFTFAIAYAMCSRDGFLLWLQRNSFIIVLFTLLPLAIAVVT
                     SSAGKALGNMTPWEPSKIPFLVGFAGILTARYKDLAETYWGIPRARDIVPLIVMAMLP
                     FVPFFALKDFGQMLIFSGAYTTLYLVAVRRWPQLLLFVGSVLLVISILVVGALPRDVQ
                     ESVPLLPTIARPISAALPARIQQRFHLWLDGFDPPSPEVSWWKKEYQEALDKNPKLKE
                     LAEQSPAMQRTVNVDIWFDQLAFQPAQATWGISSGGATGRGFGLGFPEVIPIADSDYV
                     YAAIAEETGLFGGAVIILAVIIFVVAGVRTSLESRDMFTKLCAAGLTAFIGFQALVNI
                     GGILRALPMTGITLPFVSHGGFSLITSFAMLGMLMAFSNRNARDRVIAEMPAVKSSSP
                     LKLEAVE"
     gene            1721..>2530
                     /locus_tag="VGD38_21830"
     CDS             1721..>2530
                     /locus_tag="VGD38_21830"
                     /inference="COORDINATES: protein motif:HMM:NF033484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Stp1/IreP family PP2C-type Ser/Thr phosphatase"
                     /protein_id="HEY0730741.1"
                     /translation="MSEDRNTLRVQSSALSDRGLNERRPLNEDAYLQDHSRGIFAVAD
                     GVGGAEAGEVASQTAIEVLDEAFRHQTDGADVEDLMELAIQRANASIHQMAQEHAKFS
                     MMATTIVALHLKGNVATFGHVGDSRLYRLAPDGQLHRETEDHSIVEEEVRAGRMTPEQ
                     AANHPSKNVISRALGAEQGVEVDMKTMEVEEGTEFLLCTDGITRHVSDNELRQLMVVS
                     NNLDELCNELKQRCYERGAEDNLTVVAVRVGEHLKAGERLSDLEPTISPETH"
BASE COUNT          510 a          724 c          743 g          553 t
ORIGIN      
        1 gcgctgccac cgcaggtgct accgtcgaga agatgaaaaa ccgcgcttca tcacatctgt
       61 tgctgattct gttgatactc ggtctcgaga tcaccggcta catagccatt catcgcgcgg
      121 gtttgttacg tggctacgag acttctgtca tcggcgcggt gcgcgatctg ttgatgtttg
      181 tgcccctgat gatggtcgcg atctggttgt cgcgctacaa acgctttgcc ggtaactggg
      241 tgctcttctc caccgcgatt ctgctctttg ctttcggaat gttgatccag taccggctct
      301 acagcgatcc ggaatacaac gcgcgcaaca aagcggccgc gcgcgaagaa aagatgcagg
      361 cgctgagaac gcgctacatc atggagaact acgatccggt caagaaacag ttgatgggat
      421 tgccgccgac gcccgcgcag ccgatcgaca tcgatcagtt gccgaaacgg gagtcaacct
      481 actcgctctg gaacgcgctc acctcgagct acacgtggat ccccatcttc tcgtttttca
      541 ctttcgccat tgcctatgcg atgtgctcgc gcgacggctt tctgctctgg ctccagcgca
      601 acagtttcat catcgtcttg tttacactgc tgccgctggc gatcgcggtc gtgacttcca
      661 gcgccggtaa agcactcggc aacatgacgc cgtgggaacc gtcaaagatt cccttccttg
      721 tcggcttcgc cggaatactc acggcgcgtt acaaagatct cgccgagact tattggggaa
      781 ttccgcgcgc gcgcgacatc gtgccattga tcgtgatggc gatgctgccg ttcgttccct
      841 tcttcgcgtt gaaagacttc ggccagatgc tgatcttcag cggcgcgtac acgacgcttt
      901 atcttgtcgc tgtgcgccgc tggccgcagt tgttgctgtt cgttggttca gtgttgctcg
      961 tgatcagcat actggttgtc ggcgcgttgc cgcgcgacgt gcaggagtca gtgccgttgt
     1021 tgccgacgat cgcgcgtccg atcagcgcgg cgctgccggc gcgtattcag caacgtttcc
     1081 acttgtggct cgacggtttc gatccaccgt cgccggaagt gtcgtggtgg aagaaggaat
     1141 accaggaagc gttagacaag aatccgaaac tgaaagagct tgcggaacag agtcctgcga
     1201 tgcagcggac agtcaacgtc gacatctggt tcgaccagct cgcatttcag ccggcgcagg
     1261 cgacgtgggg catcagctcg ggcggcgcaa ccggcagagg gttcggtctc ggctttccgg
     1321 aagtgattcc catcgccgac tctgactacg tctacgccgc aatcgcggag gagaccggcc
     1381 tgtttggcgg cgcagtgatc atcctggcgg tcatcatttt cgtggtcgct ggtgttcgca
     1441 cttcgctgga gtcgcgtgat atgtttacga agttgtgcgc ggctggtctg acggcattta
     1501 tcggttttca agctttggtg aacatcggcg gcatcttgcg cgccttgccg atgacgggca
     1561 tcacgcttcc cttcgtcagc cacggcggtt ttagtttgat aacgagtttt gcgatgttgg
     1621 gaatgctgat ggcgttttca aaccgaaacg cacgtgatcg ggtgattgcg gaaatgccgg
     1681 cggtaaagag ttcatctccc cttaagctgg aggcagtgga atgagcgaag acaggaacac
     1741 cttgcgggtc cagtcctcag cgcttagcga ccgcgggctt aacgagcgtc gccccctcaa
     1801 cgaagacgcc tatttgcagg accactcacg cgggatcttc gccgttgcag acggcgtggg
     1861 tggcgcggaa gctggcgaag tcgcctcaca aactgcgatt gaagttctcg acgaagcttt
     1921 tcgtcaccag accgacggcg ctgacgtcga agacctgatg gagctcgcga ttcagcgggc
     1981 caacgcttcg attcaccaga tggcccagga gcacgcgaag ttctccatga tggccacgac
     2041 catcgtcgca ctgcatctca aaggcaacgt cgcaacgttt ggacacgtcg gcgattcacg
     2101 tctctatcgt ctcgcgcctg acggacaact gcatcgcgaa actgaagatc actcgattgt
     2161 cgaagaagaa gtgcgcgccg gaagaatgac gccggaacag gcggcgaacc atccgagcaa
     2221 gaacgtgatc agccgcgcgc tcggcgccga gcagggcgtc gaagtcgaca tgaagacgat
     2281 ggaggtcgaa gaaggcacgg agtttctact ttgtaccgac ggcatcactc gccacgtttc
     2341 cgataacgag ctccggcagc tcatggtggt cagcaacaat ctcgacgaac tctgcaacga
     2401 gttgaaacaa cgttgctacg agcgcggcgc cgaagacaac ctgaccgtag tcgcggtgcg
     2461 cgtcggcgag cacttgaaag ccggtgaacg gctctcagat ctcgaaccga caatctcacc
     2521 cgagacacat
//
LOCUS       DASWTX010001437         4273 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_150848, whole genome shotgun sequence.
ACCESSION   DASWTX010001437 DASWTX010000000
VERSION     DASWTX010001437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4273)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4273)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4273
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150848"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(180..1049)
                     /locus_tag="VGD38_21835"
     CDS             complement(180..1049)
                     /locus_tag="VGD38_21835"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY0730742.1"
                     /translation="MLPGPGFSLVESVLHPTDFSEGSRVAFHHALKVAMLTRSKLTLL
                     HVASDDNSEWSHFPGIRETLERWGALPKGSDKAAVAKLGVEARKVVASEGEPVDMVVN
                     YLGKHPADLIVLATSQREGSVRWLGKSVSEPVVRKAGEMTLLIPGNVPGFVSAEDGSV
                     KLSRILIPVALTPHPAPAVNIAARLVQKLDCPQGTFVLVHVGSSNTMPALRLPEVPGW
                     TWEKELRTGEVIKNIVDTAKDHEVDLMVMSTDGRNGFLDGLRGSHSERVLRHGAAPLL
                     TVPVGSRVSRFLT"
     gene            1283..1606
                     /locus_tag="VGD38_21840"
     CDS             1283..1606
                     /locus_tag="VGD38_21840"
                     /inference="COORDINATES: protein motif:HMM:NF024834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEY0730743.1"
                     /translation="MMKLKAITGTVTIALVLGMLAVVSAESPAQEPSDTAAYYKAKCV
                     MCHGKKAEKKFDTALPDDKLVEIVLQGKQAEKPPHMPGYAAKGVTAEQAKAFVEHMKQ
                     LRAGS"
     gene            1646..3322
                     /locus_tag="VGD38_21845"
     CDS             1646..3322
                     /locus_tag="VGD38_21845"
                     /inference="COORDINATES: protein motif:HMM:NF015557.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HEY0730744.1"
                     /translation="MTVAAWTTLGLLVVMVVMLVWNKLPIWLVFIGALTVAMTLQLAS
                     PDALFKGYSNTGVVTVAALYPVAAGMYATGAISLLSERVIGLPRSIGMAQFKIFVPIA
                     AASAFLYNTPLVAMMIPAVRDLTRRTGLQGSKLFMGLSYAALLGGTITLIGTSVNLII
                     AGLAYMMLIGSRLLKEKTDSQAGVEKRTYLSEFLVEDSRLKSKTLEQAGLAHPVGFTV
                     ESVSRNGSTMKPSPELMLQSGDLLAVSAPPDVLPGIWTTIGLCPAYATKMYSRRHEHQ
                     LVEVVLSARSPAIGHRVGDLPLPDSPYQLMLVGVSRHGKAPREPLADLRLEAGDAGVV
                     EVDDAFFYENRREADFILTKRLEGFRVQRIDRAVVAIVITVGMVVLAATGITSMLNAA
                     LLAAMAMLLSGCLTIDRLWQSVDWQTIVVLGAAVGLESAITGSGLARETANVFAAVGG
                     RSPMIALAAVYVGTVLLTNVITNAASAVMMFSVAVSLANSLEVSFLPFAMILMSGASC
                     AFINPAGFQTNLMVQRPGGYSFADFARVGIPLTLIVGAVVLLLAPLVYGF"
     gene            3333..>4273
                     /gene="cax"
                     /locus_tag="VGD38_21850"
     CDS             3333..>4273
                     /gene="cax"
                     /locus_tag="VGD38_21850"
                     /inference="COORDINATES: protein motif:HMM:TIGR00378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015368 - calcium:monoatomic cation
                     antiporter activity [Evidence IEA];
                     GO_process: GO:0006816 - calcium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/proton exchanger"
                     /protein_id="HEY0730745.1"
                     /translation="MSTAGEAVSHVTHVGSPLSSFVRKPMNWLLLFIPLTIGLEHLAH
                     VSAPVLFFMAALAIVPIAAQIVGATEQLATRTGDAVGGLLNATFGNAPELIIAFVALR
                     AGYLEMVRASLVGAILANLMLALGVAFLLGGLRFHQQRFNPTAARAYSTMMFLAAVSM
                     TVPSAFSRVFAPNEVIRQEQFLNIGIAVLLLIAYGLYILFSLRTHTAAFASVDSAHGG
                     HHDEQWSVARAVITLLAASALAAWMSEILVGAAEETGKALGMSQLFIGIVFVAIVGGA
                     AESGSAIAMARKNKMDLSVGIAAGSCIQIALFVAPILV"
BASE COUNT          814 a         1138 c         1346 g          975 t
ORIGIN      
        1 tggttcgcca tggcgcggac gaggacgacg caggtaccta atgaagcatt tcccatactc
       61 gctggtctat acagtctcgg gtgaccagct ccgtgttttg gctgttgctc attacagccg
      121 cctggttatt gggccgggcg aaagtaggca cagctctcac ttctcgtgcc tctttgtggc
      181 tatgtcagga aacgcgagac gcgtgagccg acggggacgg tgagtagcgg cgcggcgccg
      241 tggcgcaaga ctcgttcgct gtgactgcca cgcaggccgt cgaggaaacc gttacggccg
      301 tcggtcgaca tcaccatcag atcgacttcg tgatctttcg cggtgtcgac gatgttttta
      361 atgacctcgc cggtgcgcaa ctctttctcc caggtccaac ccggtacttc aggaagacga
      421 agcgccggca tcgtgtttga actgccgacg tgcacgagga caaacgttcc ctgtgggcag
      481 tccagctttt ggaccaggcg agctgcgatg ttcacagcgg gggcagggtg cggcgtgagg
      541 gccactggga tgagaatcct gctcagcttc accgatccgt cttcagcaga aacaaagccc
      601 ggcacattac cgggaatcaa cagtgtcatc tcgcccgctt tgcgcacgac cggttcggac
      661 acagacttac ccagccaacg aacgctgcct tcgcgctgac tcgtcgccag cacgatcaaa
      721 tccgcaggat gctttcctaa atagttgacg accatgtcca ccggttcacc ttcactggcg
      781 acaaccttgc gagcttccac gccaagcttc gctaccgcag ccttgtcgct acctttcggt
      841 aaagctcccc aacgttcgag cgtctcgcgg atgccgggaa agtgggacca ctccgaattg
      901 tcatcgctgg ccacgtggag cagcgtgagt ttggatctgg tcaacattgc gactttgagt
      961 gcgtggtgaa aagcgacgcg gctgccttct gaaaaatcag tgggatgcag cacgctttca
     1021 acgagtgaaa aacccggtcc gggtagcatg gcagtcttct ccgaaggtta ttgaaacatt
     1081 cgccggaaag tttcgcgttg gtaaatcatc cacgcttcca gctcgcgatg caacgtggtg
     1141 ctggttttgc ggcgatcgta ctgtccctcc agcctcctca acactgtcag aattgccagt
     1201 aacacgaacc cgaagcgagg gatagcatca tggctcttgt aagagccagt gtgctgctcc
     1261 acggccgcgg aaaggtgatc tcatgatgaa gttaaaagcg ataaccggga cggtgacgat
     1321 tgctttggtg ttgggaatgc tggccgtagt gtcggctgag agcccggccc aggaaccttc
     1381 ggacacggcc gcctactaca aagcgaagtg cgtgatgtgt cacggcaaga aagccgagaa
     1441 gaaattcgat accgctttgc ccgacgataa gctggtggaa atcgtgttac agggtaagca
     1501 ggctgagaag ccgccgcaca tgcccggcta tgcggcaaaa ggtgtgacgg cagagcaggc
     1561 caaagcgttc gtcgaacaca tgaagcagtt aagagccggg tcgtagataa cggcgccgca
     1621 aaagcgaacc accacaagag caagaatgac agttgccgca tggaccacgc ttggtttgtt
     1681 agtcgtcatg gttgtgatgc tcgtgtggaa caagctgccg atctggctcg tgtttatcgg
     1741 tgcgctgacg gtcgccatga cgttgcaact cgcgagtccc gacgcgttgt tcaagggtta
     1801 cagcaacacc ggcgtggtca cagtcgccgc gctttatccg gtcgccgcgg gcatgtatgc
     1861 gaccggcgcg atctcgctgt tgtctgaacg cgtcatcgga ctgccgcgat cgatcggcat
     1921 ggcccagttc aagatcttcg ttcccatcgc cgcagccagc gcgtttcttt acaacacccc
     1981 cttggtagcg atgatgatcc cggcggtgcg agaccttacg cgccgcaccg gtctgcaagg
     2041 atcaaagctg ttcatgggcc tcagctatgc ggcgctgctc ggcggcacga tcacgctaat
     2101 cggaacgagc gtcaatctga tcattgccgg tctcgcttac atgatgttga tcggttcgcg
     2161 tctgctaaag gagaaaaccg acagccaggc aggagttgaa aagcggactt atctcagcga
     2221 gttcttggtc gaagattccc ggctcaagag caagacactc gaacaggcgg gcttggccca
     2281 tccggtcggt ttcacggtcg agtcggtaag cagaaacggt tcgacgatga agccatcgcc
     2341 tgagttgatg cttcagtcag gggatttgct cgcggtttcg gctccgcctg acgtcttgcc
     2401 cgggatatgg accacgatcg ggttgtgccc ggcttacgct acgaagatgt acagccgccg
     2461 tcacgagcac cagctcgtgg aagtcgtgtt gtctgcgcgt tcgcccgcga ttggtcatcg
     2521 cgtcggagat ctgccgcttc cggatagtcc ttatcaactg atgctggtgg gagtttcgcg
     2581 tcatggcaaa gcgccgcgcg aaccgcttgc cgatcttcgt ctcgaagccg gtgacgccgg
     2641 cgtggtggaa gtcgacgacg cgttctttta tgagaaccgg cgcgaagcag atttcatatt
     2701 gactaaaaga ctcgaaggtt ttcgcgtgca gcggatcgat cgcgcggtgg ttgcgattgt
     2761 gatcacggtc gggatggtgg tcctcgcggc aacgggaatc acgagcatgc tcaacgcggc
     2821 gttgttggcg gcaatggcga tgttgttgag cgggtgtttg acgatcgatc gtttgtggca
     2881 aagcgttgat tggcaaacga tcgtggtgct tggcgccgcc gtcggtctgg agtcggcgat
     2941 cacgggaagc ggtttggcgc gcgagactgc aaacgtcttc gcggcggttg gcgggcgtag
     3001 tccgatgatc gcgctggcgg ctgtgtacgt tggaacagtt cttttgacga acgtgatcac
     3061 gaatgccgca tcggcagtga tgatgttctc ggttgcggtg tcgttggcga acagtctcga
     3121 ggtcagtttt cttccgttcg cgatgatcct gatgagtggc gcgtcgtgcg cgttcatcaa
     3181 tcctgccggc tttcaaacca atctgatggt ccaaagacct ggtggctata gttttgcgga
     3241 tttcgcgcgc gtgggaattc cgctgacgtt gattgttggt gcggtggtgc tgttgctggc
     3301 gccgcttgtg tatgggtttt aaggaggttg atatgtctac agcaggcgag gcagtttctc
     3361 acgtgacgca tgttgggtcg ccgttaagca gctttgtgcg aaagccgatg aactggttgc
     3421 tgctgtttat tcccttaact atcggactcg aacacctggc ccatgtgtcg gcgccggtgc
     3481 tgttcttcat ggcggcgctg gcgattgttc cgattgcggc gcagatcgtc ggcgccacgg
     3541 aacaacttgc cacgcgcacc ggcgatgctg tcggcggttt gctgaatgcg acgtttggca
     3601 acgcgccgga attgatcatc gcttttgtgg cgttgcgggc tggttatctc gagatggtgc
     3661 gggcgtcgct ggtgggcgcg atactggcga acttgatgct cgcgctcggc gttgcgtttc
     3721 tgctcggcgg tcttcgtttt caccaacagc ggttcaatcc gacagccgcg cgcgcgtaca
     3781 gcacgatgat gtttctggct gctgtgagca tgacggtgcc gagtgcgttc agccgtgtgt
     3841 ttgcgccgaa cgaagtgata cgccaggaac aattcctcaa cattgggatc gcggtgctgt
     3901 tgttgatcgc gtacgggctc tacattctgt tttcactgcg aacgcacacg gcggcgtttg
     3961 cgagcgtcga ctccgcacac ggaggtcatc atgacgaaca gtggtccgta gcgcgcgcgg
     4021 tgatcacgtt gctcgcggcg tcagcgcttg cggcgtggat gagtgagatt ctcgtcggcg
     4081 ccgcggaaga gactggcaag gcgctgggga tgtcgcaact gttcatcggg atcgtgtttg
     4141 tcgcgattgt cggtggcgct gcggagagtg gatcggcaat cgcgatggcg cgcaagaaca
     4201 agatggacct gtcggtgggg atcgcggcgg gaagttgtat tcagatcgcg ttgttcgtcg
     4261 cgccgatact cgt
//
LOCUS       DASWTX010001438         3030 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_150856, whole genome shotgun sequence.
ACCESSION   DASWTX010001438 DASWTX010000000
VERSION     DASWTX010001438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3030
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150856"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..704
                     /locus_tag="VGD38_21855"
     CDS             <1..704
                     /locus_tag="VGD38_21855"
                     /inference="COORDINATES: protein motif:HMM:NF014325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD-binding protein"
                     /protein_id="HEY0730746.1"
                     /translation="CGAGRVGSHLVRGLKATNDPFIVIESNRARVEELMDQGISVLVR
                     DATLEETLREAGVEHARGLAACLPDDADNVYVVLTARDLNPKLHIVARAAEEQAESKL
                     IRAGANRVVAPTIIGGHRMAMALTKPAVGDFLDSLTANDLELGFEQLEVEAGSTLVGR
                     RLSETNIRSELDIVIVSIRRSHGEIVFNPSGDAKIELGDMLIAIGRAEALAKLTELAR
                     GQALAGNRNNNRVKV"
     gene            714..1553
                     /locus_tag="VGD38_21860"
     CDS             714..1553
                     /locus_tag="VGD38_21860"
                     /inference="COORDINATES: protein motif:HMM:NF016228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY0730747.1"
                     /translation="MSILVTGGSGYLGTFVRQFFSADDFSRRSDLDVLNEYDAQRVQE
                     YDTVIHLAAYFDKSPEGAQQCFQTNADGTRNLLQYMRPGSTFIYASTKDVYGSNASET
                     EDVNEDTSTDYCGQSAFEWSKLIGEQYVRYYAEKNDFRACIFRMSTIFARPSEGNAPG
                     LVTHYVESIKHRQPIRLPADIDPVRDILYVDDFSRACRAFMKSSKQFGLYNLGGGRLN
                     AVSLRGIVERVSKLIEIEPVIEEVPLPAPVPLRYVSDTTRVSNELDWRPQIGVNDGLA
                     VIL"
     gene            1564..2655
                     /gene="waaF"
                     /locus_tag="VGD38_21865"
     CDS             1564..2655
                     /gene="waaF"
                     /locus_tag="VGD38_21865"
                     /inference="COORDINATES: protein motif:HMM:TIGR02195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HEY0730748.1"
                     /translation="MGHAKEIKRVVVRGTNWVGDSVMTVPALRALRRVLPEAEITLVV
                     RPSAKGIFADVDFIDQLLIYDRRSAFSIIPQVSEWRKRHFDFAFLFQNAFEAALIPFL
                     AGVPLRLGYATESRQALLTHPLALPDWRSTRHEVFYYLYLVTALEQLLFAKSEICEQV
                     PDASLQISDARKAEAENLLRAYGVREGEPVVALCPGSINSRAKRWPVERFAALADRLI
                     DSRRQVLLIGSADEADVTREVTNRMQQKPVVLTGKTSLDQITAVLSIVDLVVTNDTGP
                     AHIAAALGRPTLVIFGPTNPLTTRPFAPEAEILRNPPDCAPCMLRDCPIDHRCMTAIE
                     VNEVFEHSQALLKRASFAKTVRSLCDSVA"
     gene            2663..>3030
                     /locus_tag="VGD38_21870"
     CDS             2663..>3030
                     /locus_tag="VGD38_21870"
                     /inference="COORDINATES: protein motif:HMM:TIGR01662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HEY0730749.1"
                     /translation="MKRPALFMDRDGTVSEEVGYVNHPSRFRVFPYTAEAIKLLNDNG
                     WLAILVTNQAGVARGYFAEDVIVKVHEQLTRALENASAKLDAIYYCAHHPSVGEPPYR
                     LDCDCRKPKTGLIDRAAADF"
BASE COUNT          612 a          803 c          952 g          663 t
ORIGIN      
        1 tctgtggagc gggccgcgtc ggttcgcatc tggttcgcgg cctgaaagcc acgaacgatc
       61 cgtttatcgt gatcgaaagc aatcgcgcgc gggtcgagga attgatggac cagggcatct
      121 cggtgctcgt acgcgacgcg acgctcgaag aaactttgcg cgaagccggt gtcgaacatg
      181 cgcgcgggct ggcggcctgt ttgccggacg atgcggacaa cgtttacgtc gtgctgacgg
      241 cgcgtgacct gaatccgaag ctccatatcg tggctcgcgc ggcggaagaa caggcggaaa
      301 gcaaactgat ccgcgcgggc gcgaaccgcg tcgtcgcgcc gacgatcatc ggcggacatc
      361 gtatggcgat ggcgttgacc aaacccgccg tcggagactt tctcgactcg ctcacggcga
      421 acgatctcga gctcggattc gaacagctcg aagtcgaagc cggatcgacg ctcgtcggcc
      481 gcaggttgag tgagacaaac attcgttcgg agttggacat cgtgatcgtc agcatccggc
      541 gcagtcatgg cgagatcgtt ttcaatccga gtggcgacgc aaagatcgaa cttggcgaca
      601 tgttgatcgc gatcggcagg gccgaggctt tggcgaaact gaccgagttg gcgcgcgggc
      661 aggcgcttgc tggaaatcga aataacaatc gggtgaaggt ttaagactga ctgatgagca
      721 ttctcgttac gggcggcagt ggttacctgg gaacattcgt ccgccaattt ttctcagctg
      781 atgatttttc gcggcgctca gatctcgacg tcctcaacga atacgacgcg cagcgagtcc
      841 aggaatacga caccgtaatt catctcgccg cgtacttcga caagagtccg gaaggcgctc
      901 agcagtgttt ccagaccaat gctgacggaa cgcgaaacct gttgcagtac atgcggccgg
      961 gttcgacctt catctatgcc tcgacgaaag acgtttacgg cagtaatgcg agtgagactg
     1021 aagacgtgaa tgaagacacg agcaccgatt attgcgggca gtcggcgttt gagtggtcca
     1081 agctgatcgg cgagcagtac gtgcgttact acgcggagaa gaacgacttt cgtgcgtgta
     1141 tctttcgcat gtcgacgatc tttgcgcggc cgtcggaagg aaacgcgccc gggttggtta
     1201 cgcactacgt tgaatcgatc aagcaccggc agccgatccg gcttcctgcg gacatcgatc
     1261 cggttcgcga tattctgtac gtggatgatt tctcgcgcgc gtgtcgtgcg tttatgaagt
     1321 cgtcgaaaca gtttgggctt tataacctcg gcggtggaag gttgaatgcg gtgagtctgc
     1381 gcgggatcgt cgagcgcgtt tcgaagttga tcgagatcga gccggtgatt gaagaggtgc
     1441 cgctgccggc gccggtgccg ttgcgatacg tttcggacac gacgcgcgtc agtaatgagt
     1501 tggactggcg tccgcagatc ggtgttaacg acgggctggc agtgattttg tagttttatg
     1561 gccgtgggtc atgccaaaga gataaagcga gtcgtcgtcc gcgggacgaa ctgggtgggc
     1621 gactcggtga tgaccgtgcc ggcgttgcgt gcgctcaggc gagtgttgcc ggaagcggag
     1681 attacattgg tcgtgcggcc cagcgccaaa ggaatcttcg cggacgtaga ttttatcgat
     1741 cagcttctta tttacgaccg tcgcagtgcg ttttcaatca tccctcaagt tagtgagtgg
     1801 cggaagcggc acttcgactt tgcgttcttg tttcaaaacg cgtttgaagc ggcgctgatt
     1861 ccctttcttg cgggcgtgcc gttgcggctt ggttatgcga cggagtcgcg gcaggctttg
     1921 ttgacgcacc cgctcgcgtt gccggattgg cgttctacgc ggcacgaagt cttttattac
     1981 ttgtacctgg tcacggctct cgagcaactg ttgtttgcga agagcgagat ttgcgagcaa
     2041 gtgccggatg cgagtttgca gatttcggac gcacgaaagg cggaagccga gaacctgttg
     2101 cgcgcttacg gtgtgcgcga aggagagccg gtggtggctc tttgtcccgg ttcgatcaat
     2161 agccgtgcga agcgttggcc ggtggagcgg tttgcagcac tggctgacag attgatcgac
     2221 tcgcgtcgtc aggtgttgct gatcggctcg gcggacgaag cggatgtgac gcgcgaagta
     2281 acgaatcgaa tgcaacagaa gcctgtggtg ctaaccggaa agacgtctct cgaccagatc
     2341 accgcagtgc tttcgattgt cgatcttgtg gtcacgaatg acaccggtcc ggcgcacatc
     2401 gccgccgcac tcggccgtcc gacactcgtg atctttggac caacgaatcc gctgacaacg
     2461 cgcccgtttg cacccgaggc cgaaatcctg cgcaatccgc cggactgcgc gccatgcatg
     2521 ttgcgcgact gcccgatcga tcatcgttgc atgacggcga tagaagtaaa tgaggtcttc
     2581 gaacattctc aagcgctgct caaacgcgcg agctttgcga aaaccgtgag gagcctttgc
     2641 gattcggtcg cgtgacaatc ggatgaaacg acccgcactc ttcatggatc gcgacggaac
     2701 cgtctccgag gaagtcggct acgtcaatca tccgtctcgt tttcgtgtgt ttccgtatac
     2761 ggctgaggcg atcaagctgc tcaacgacaa cggttggctg gcgatcctgg tgacaaatca
     2821 ggccggcgtc gcgcgtggtt atttcgcgga agacgtgatt gtgaaggtcc acgagcaact
     2881 gacgcgcgcc ctggagaatg cttccgcgaa gctcgacgcg atctattact gcgcgcatca
     2941 tccgtctgtc ggcgaaccgc cgtatcgatt agactgcgac tgccgtaaac ccaaaaccgg
     3001 tctcatcgac cgcgctgccg cagacttcca
//
LOCUS       DASWTX010001439         3688 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_216095, whole genome shotgun sequence.
ACCESSION   DASWTX010001439 DASWTX010000000
VERSION     DASWTX010001439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3688
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216095"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1086)
                     /locus_tag="VGD38_21875"
     CDS             complement(<1..1086)
                     /locus_tag="VGD38_21875"
                     /inference="COORDINATES: protein motif:HMM:NF016593.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HEY0730750.1"
                     /translation="MLDLQPSSFEAFEREARQGNVVPVVRSVLADLHTPVGAFMRIAG
                     KSRYSFLLESVEGGERIARYSFLGAEPEMVVRGQGFQTFVERNGKTESYPIVATEWVR
                     DYFRQRSLARRPGLVPFAGGAVGYVGYDAAQWFEPALRDDQTQPLTGPTDALWMFYRT
                     IVAFDRVKQRLEIVSIVLTEEAQGSHDRLRQLYDDAVARTLEVEKEIFEADSPPLRPP
                     IRSDGSKNLSLQSNWTRRAFEEGVRRVKDYIAAGDCYQVVLSQRFSTKFTGEALQIYR
                     ALRAINPSPYMFFLRAGEEAVIGASPEMLVRCHGQRLDYRPIAGTRKRGATETEDWML
                     SEDLKTDEKEVAEHMMLVDLGRNDLGRV"
     gene            complement(1091..1876)
                     /locus_tag="VGD38_21880"
     CDS             complement(1091..1876)
                     /locus_tag="VGD38_21880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015351969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY0730751.1"
                     /translation="MSEKIFADGILSGRVAFVTGGGTGITGGVARAFAEAGASVALVS
                     RKMEHLEPAAQLINENGGNAIAVAADVRQPAEIEAAIAKTIEAFGKIDIVVNGAAGNF
                     LCKAEELSPNGFGTVVDIDLKGTFNVSRAAFAQLKEHRGQILNISATLHYLGTPMQLH
                     VSAAKAGVDALTRNLAVEWGRYGIRVNAIAPGPIEDTEGMQRLVPEPVRERLKKNVPL
                     GRFGKIADIEKAALFICSDAGSFINGEVLVVDGGHWLSTNRPL"
     gene            complement(1873..2604)
                     /gene="hisA"
                     /locus_tag="VGD38_21885"
     CDS             complement(1873..2604)
                     /gene="hisA"
                     /locus_tag="VGD38_21885"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR00007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HEY0730752.1"
                     /translation="MKIIPAIDLKNGRCVRLTQGRKADVTVYDEDPVDVAKSFAAAGA
                     QMIHVVDLDGAFQGGESRNRAVLAKIVEAVDVPIEFGGGIRSREEVQHLCDLGVGRVV
                     LGTVAAESPAHLHEFVTRFGSKICVGIDARDGHVMTRGWETATHVMAVELARVVASCG
                     VERIVYTDIARDGMLTGPNLEQTLAVARAANVHVTASGGVSSLDDIQRLRESGEPLLD
                     SVIVGKALYEGKFKLEEALQIANSP"
     gene            complement(2582..3421)
                     /gene="hisN"
                     /locus_tag="VGD38_21890"
     CDS             complement(2582..3421)
                     /gene="hisN"
                     /locus_tag="VGD38_21890"
                     /EC_number="3.1.3.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR02067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004401 - histidinol-phosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphatase"
                     /protein_id="HEY0730753.1"
                     /translation="MSWPNDENPEERVPPSKSELNELLEFSVALARGAGDLSLNYFRK
                     QPETSTKSDGSYVTIADREAEAYLRRQIAERFPDDGVLGEEEGEHHGRSGRRWILDPI
                     DGTFAFVHGVPFYGVLIALEIDGEPSVGVVNIPALNEIVAAAKGCGCFLNGAPARVSS
                     IAKLKDALLLSTNFNVCGQHGFGRAAELLQARAKTSRTWGDCYGYVLVATGRAEVMFD
                     PVMNLWDCAPLLPIMEEAGGTFTDWRGERTVNGGNSIATNGLLFDEVFDIVKNTNENN
                     PGN"
     gene            complement(3372..>3688)
                     /gene="hisE"
                     /locus_tag="VGD38_21895"
     CDS             complement(3372..>3688)
                     /gene="hisE"
                     /locus_tag="VGD38_21895"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: protein motif:HMM:NF001611.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoribosyl-ATP diphosphatase"
                     /protein_id="HEY0730754.1"
                     /translation="HEQLDGVLQELYELIKTRQAERPEGSYTTYLFDKGLDKILKKVG
                     EESAETIIAAKNDDPKQLVAETADLLYHLLVMLVARGVNLDDVRDELAQRRKPGGTSA
                     AE"
BASE COUNT          745 a         1201 c          992 g          750 t
ORIGIN      
        1 aacgcgcccg aggtcgttgc ggcccagatc cacgagcatc atgtgttccg caacttcctt
       61 ctcgtcggtt ttcagatctt cgctcaacat ccagtcttcg gtttccgtcg caccacgttt
      121 gcgtgtcccc gcaatcgggc ggtagtcgag acgctgaccg tggcagcgca caagcatttc
      181 cggcgacgcg ccaatcaccg cctcttcgcc cgcgcgcagg aagaacatgt agggcgaagg
      241 attgatggca cgaagggcgc gatagatttg tagtgcttcg ccagtgaact ttgtcgagaa
      301 ccgttgcgac agcacgacct ggtaacaatc gccggcggcg atgtaatcct tcactcggcg
      361 aacgccttct tcgaaagcgc gcctggtcca gttggactgc aatgaaaggt ttttcgaacc
      421 gtcgcttcgt atcggcggcc gcagcggcgg cgaatcggct tcgaagatct ccttctcaac
      481 ttccagtgta cgcgcgactg cgtcgtcgta aagctgacgc aagcggtcgt gacttccctg
      541 cgcctcttcg gtcaaaacga tcgagacgat ctcgagccgt tgcttcacgc gatcgaaagc
      601 gacgatggtg cgatagaaca tccagagcgc gtctgttgga ccagtgagcg gctgtgtttg
      661 atcgtctctc agggccggtt caaaccattg cgccgcatcg taaccgacat agccaacagc
      721 gccgccggcg aatggcacga gccccgggcg gcgtgcgagt gagcgttggc gaaagtagtc
      781 gcgcacccat tcggttgcga cgatgggata cgactcagtc ttgccgttac gctcgacgaa
      841 ggtctgaaat ccctgtccac gaacgaccat ctccggctcg gcgccgagga atgaatatcg
      901 cgcgatgcgt tcgccgcctt ccacagactc cagcagaaac gaatagcgcg acttacccgc
      961 gatgcgcatg aacgcgccga ccggcgtatg cagatccgca agcacagatc tcaccaccgg
     1021 cacgacgttg ccttgccgtg cttcacgctc aaaagcttcg aagcttgaag gctgtaggtc
     1081 cagcatttat ttaaagtggc cggttcgtgg aaagccagtg gccgccatca accaccaaca
     1141 cttcaccatt gataaaacta cccgcgtcag aacaaatgaa cagcgccgcc ttctctatat
     1201 cagcgatctt cccgaaacgt cccaacggca cgttcttctt caatcgctct ctgaccggct
     1261 ccggcacgag ccgctgcatt ccctccgtgt cctcgattgg accaggcgcg atggcgttca
     1321 cgcgaatccc ataacgtccc cactcaaccg ccaggttgcg cgtcaacgca tcgacaccag
     1381 ccttcgccgc ggaaacgtga agctgcatcg gcgtgccgag gtaatgcagc gtcgcactga
     1441 tgttcagaat ctgcccgcga tgctctttga gctgcgcaaa cgccgcgcga gacacgttga
     1501 acgtgccttt cagatcgatg tctacaacgg tgccaaagcc gttcggcgac aactcttcag
     1561 ccttgcacaa aaaattcccg gccgcgccgt tcacgacgat atcgatcttg ccaaacgctt
     1621 caatcgtctt ggctatcgcc gcctcgatct cagccggttg acgaacatcc gccgcaaccg
     1681 cgatcgcatt cccgccgttc tcattgatca actgcgccgc gggttcgaga tgctccattt
     1741 tccggctcac caacgcgaca ctcgcgcccg cctcggcaaa ggcgcgcgcc acaccgccgg
     1801 tgatgccggt cccgccgcca gtaacgaacg cgacgcggcc gctcaaaatt ccatctgcaa
     1861 agattttttc gctcatggtg agtttgcgat ctgcaacgcc tcttccagtt tgaattttcc
     1921 ttcgtacaga gccttgccaa caataacact gtcgagcagc ggctcgcccg actcgcgcaa
     1981 ccgctgaatg tcgtcgagac tggaaacgcc gcccgaagcc gtcacgtgca cgttcgccgc
     2041 acgcgcgact gcgagtgtct gttcgaggtt tggaccagtc agcatgccgt cgcgagcgat
     2101 gtcggtgtaa acgatgcgtt cgacgccgca gctggcgacc acgcgcgcga gctcgaccgc
     2161 catgacgtgc gtcgccgttt cccagccacg cgtcatcacg tggccgtcgc gcgcgtcgat
     2221 gccgacgcag atcttcgacc cgaaccgggt cacgaattca tgcaggtgcg cgggtgattc
     2281 ggcagcgacc gttcctaaaa caacacgacc gacgccgaga tcgcagaggt gctgcacttc
     2341 ttcgcgcgac ctgatgccgc cgccgaactc gatcggcacg tcgacggcct ccacaatctt
     2401 cgcgagcacc gcgcgattgc gcgactcgcc gccctgaaac gcgccgtcga gatcgacaac
     2461 gtgaatcatc tgcgcacccg cagccgcaaa actcttcgcc acatccaccg gatcctcgtc
     2521 ataaaccgtg acgtcagcct tacgcccctg cgtcaaccgc acgcagcgtc catttttcaa
     2581 atcaattgcc gggattattt tcatttgtgt ttttaacgat gtcgaatact tcgtcaaaca
     2641 acagtccatt ggtcgcgatc gagttgccgc cgttgacggt gcgctcgccg cgccagtcgg
     2701 taaacgtgcc gccggcttct tccatgatcg gcaacagcgg cgcgcagtcc caaaggttca
     2761 tcaccggatc gaacatcact tcggcacggc cggtcgcgac cagcacgtag ccataacagt
     2821 cgccccacgt gcggctcgtc ttcgcgcgcg cttgcagcaa ctcagccgcg cgcccgaagc
     2881 cgtgctgacc acagacgttg aagttggtcg acaacaacag cgcgtctttg agtttagcaa
     2941 tcgacgagac gcgtgcggga gcgccgttca gaaaacaacc gcatcccttc gccgccgcga
     3001 cgatctcatt cagcgccgga atattgacga cgccgacgct cggctcgccg tcgatctcca
     3061 aagctatcaa cacgccataa aagggaacgc cgtgcacaaa agcaaacgtg ccgtcgatcg
     3121 gatcgagaat ccagcgccgg cccgaacgcc cgtggtgttc gccttcctct tcgcctaaga
     3181 caccgtcgtc gggaaaacgt tccgcaattt gccggcgcag atacgcttcc gcctcgcgat
     3241 ccgcgatggt gacgtagctg ccgtcggact tggtgctcgt ctccggctgc ttgcgaaagt
     3301 agttcaacga taggtcacca gcgccacgcg cgagggcgac tgagaattcg agcagttcgt
     3361 tcagttcact cttactcggc ggcactcgtt cctccgggtt ttcgtcgttg ggccaactca
     3421 tcgcgcacgt cgtcgagatt cacaccacgc gcgacgagca tcacgagtaa gtggtacaag
     3481 agatcggccg tttccgcaac gagttgcttc gggtcgtcgt tcttcgccgc gatgatcgtc
     3541 tcggcagact cctcgccgac cttcttcagg attttatcga ggcctttgtc gaagaggtaa
     3601 gtggtgtacg aaccttccgg ccgttctgct tgccgggttt tgatcagttc gtaaagctct
     3661 tgcagcacac cgtccagttg ttcgtggt
//
LOCUS       DASWTX010001440         4054 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_194581, whole genome shotgun sequence.
ACCESSION   DASWTX010001440 DASWTX010000000
VERSION     DASWTX010001440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4054
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194581"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..506
                     /locus_tag="VGD38_21900"
     CDS             <1..506
                     /locus_tag="VGD38_21900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730755.1"
                     /translation="EWVTLAVVDPNARLAAAIAELRKRLEANKGDNLCAKLFGGLENA
                     LKKLNESKITFRSMGGPISLNGKTIAPTPVTDAITRGKEVIINSDGRFMAEDGTLPVM
                     LRPDLKATGVNYFDLDDVGSAALILGHELGHRTGKLEDEEKAKDRQATNDRNNQRVYD
                     ACFKGMS"
     gene            523..1158
                     /locus_tag="VGD38_21905"
     CDS             523..1158
                     /locus_tag="VGD38_21905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730756.1"
                     /translation="MRPIYLVSVLVTCLGCTILKVVGHPPEPASLRSELQLKTEVVGA
                     TFCESDYLRLQLRLRYFNSGKQAVILSRYSNTIWTYFISKTFKDAQRKKYEQEYSPTQ
                     SLIGESAPVDTEEPNAQEFVILSPGGSYEVTAQAHLPFLHDGKDDDPSLLRPGTHVLE
                     IRAGTWPGKQDVATKLRERWRAHGYLWTESIMSQPMTFTIAESPQVVKCSD"
     gene            1469..3466
                     /gene="thrS"
                     /locus_tag="VGD38_21910"
     CDS             1469..3466
                     /gene="thrS"
                     /locus_tag="VGD38_21910"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEY0730757.1"
                     /translation="MSEINVQLKDGAPVPVPDSATVAEALKKLDRDLAKQALAAKVGG
                     REVDLAAPVNDLAEQNGAVQIEPIVPQTRDGLEVLRHSTAHLLAAAVLDLFPGTKLGI
                     GPALLDDPRYGFFYDVITPRPLTEADLPVIEKRMKQIANQNLHYRREEIAKADALRLF
                     NERDEPLKCELIDEKAGEVVSVYYIDGSPFIDFCLGPHVPNTNKLKAFKLLSLAGAYW
                     KGDASQPQMQRIYGTAFFTPEELDAWIKQREEAEKRDHRRLGRELDLFSIQEDYGQGL
                     IFWHPKGGAIRKEMEDYLREELSLRGYGLVFTPHIAKRELWFTSGHEINYVDSMFSPM
                     EFEGQEFRIKPMNCPFHIGIYKSAQRSYRDLPLRYAEFGTCYRAELSGALHGLIRARG
                     FTQDDAHIFCTPETVRGEIVSCIDFAFNVYEAFGFKDYKVELSVRGDDHSLFLGADDQ
                     WESAEAALVDALNSRGIPYQRIEGEAAFYGPKIDIRVEDAIGRAWQLTTVQFDFNLPE
                     RFQLEYIGEDNKPHRPIMIHRALFGSMERFFGVLIEHYAGAFPMWLAPVQVAVLPITD
                     RINDYAEEVARDLRVAGFRVESNLRSEKIGAKIRDAQLQKVPFMLVLGDREMEQRVVA
                     VRERAKGDIGAMSIEEFKEMARKLVETRALTNNSQTQEVQQ"
     gene            3559..>4054
                     /gene="infC"
                     /locus_tag="VGD38_21915"
     CDS             3559..>4054
                     /gene="infC"
                     /locus_tag="VGD38_21915"
                     /inference="COORDINATES: protein motif:HMM:TIGR00168.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEY0730758.1"
                     /translation="MIGDEGEQLGVMDVRDAIRAAREKGLDLVEVAPNADPPVCRIID
                     FGKYQYEAKKKANEAKKKQVTITVKEVKFRPGTDDHDYNYRMKHAREWLQDGDKVKAT
                     IWFRGREMTHRELGARILEKLEQDLADVGEVETRPKMEGNQMFIILGPKRHKSGGAGG
                     TKETS"
BASE COUNT          994 a         1035 c         1203 g          822 t
ORIGIN      
        1 cggaatgggt cactcttgcg gttgtcgatc cgaatgcacg actggctgcc gcaatcgcgg
       61 aattaagaaa gcggctcgag gccaataaag gcgataatct atgtgcaaaa cttttcggag
      121 gtctggaaaa cgccttaaag aaactcaacg aatccaaaat aacctttcgc tccatgggtg
      181 gcccgatatc tctgaatggc aagacaattg caccaactcc ggtgacggat gccataacga
      241 gaggcaagga agtgataata aactcggatg gtagatttat ggcagaagat ggaacgcttc
      301 cggttatgct aagaccggac ttgaaagcta caggcgttaa ttactttgac ttggacgacg
      361 tgggctctgc ggcattgata ttgggacatg aactcggaca taggactggt aagctggaag
      421 atgaggagaa ggcaaaggat cgacaagcta ctaacgatag aaataaccaa cgggtctacg
      481 acgcatgttt taaagggatg agctagtaaa gaaaggatcc tcatgagacc gatctatttg
      541 gtgagcgtgc tggtgacgtg cttgggatgc acgatcctca aagtagtagg gcacccgccg
      601 gaacctgcca gtctaaggtc tgaattgcaa ctgaagacag aagttgtggg cgcaacattc
      661 tgcgagagtg actatctacg cctacagtta agattgcgat atttcaatag cggtaagcag
      721 gcagtaattc tttcccggta tagcaatacg atctggacct actttattag caagactttt
      781 aaggacgcac agaggaagaa gtatgagcag gaatactctc caacgcagtc gttaatcggc
      841 gaatcagcac ccgttgatac ggaggagccc aacgcgcagg aatttgtgat tctaagcccg
      901 ggaggttctt acgaggtcac tgctcaggca catcttcctt ttttacatga cggaaaggat
      961 gacgatccca gtttgctgcg cccgggaact catgttcttg aaattagagc cggaacatgg
     1021 cctgggaagc aggatgtggc aacgaagttg cgcgaacgct ggcgcgctca tggctacctt
     1081 tggacggaat cgataatgtc tcagccgatg accttcacta tcgcggagag tccccaggtc
     1141 gttaagtgtt ccgactaacc tggcgtccga aaagtcatat tcgatgccga tcgggttgcg
     1201 cgggtaagag accgtttgct agaatcccac gcgtaatttt cttacttttg ctaggagctc
     1261 cagaagacct tcgcatgaat cgaacaacta ctcgattctt tactttttaa gtgccgcccg
     1321 cccagcgggt gccggcgaag gcgctcctaa cgaatccgat caacgaacga agtaagcaaa
     1381 ttagtgaatc gcaaatcgta ggaatcgcct tcggccctgg gactagggtc tttgttgctg
     1441 tcccatgcgc agtagaggtg atttggaaat gagtgagatt aacgtacaac tgaaagacgg
     1501 cgcgcctgtt cccgtgcctg attcggcgac cgttgccgag gctctcaaaa agctcgaccg
     1561 cgacctcgct aaacaggctt tggcggcgaa ggtcggcgga cgtgaagtgg acctcgcggc
     1621 cccggtcaac gatcttgccg agcagaacgg cgctgtgcaa atagaaccaa tcgtgccgca
     1681 gacgcgcgac ggcctcgaag tgttgcgtca ctcgacggcg cacctgctgg ccgccgctgt
     1741 gctcgatctg tttcccggaa ccaagctcgg catcggaccc gcgctcctcg acgatccgcg
     1801 ttatggcttc ttctacgacg tgattacgcc gcggccgttg acggaagccg atctgcccgt
     1861 aatcgaaaag cggatgaagc agatcgcgaa ccagaacctg cactaccgcc gcgaggagat
     1921 tgccaaagct gacgcgttgc gccttttcaa cgagcgcgac gagccgttga agtgtgaact
     1981 gatcgacgag aaggccggcg aagtggtgag cgtctactat atcgacggct cgccgttcat
     2041 cgatttctgt ctcggtccac acgtgccgaa cacgaacaag ctgaaggcgt tcaaactgct
     2101 ctcgctcgcc ggcgcgtact ggaaaggcga cgcctcgcaa ccgcagatgc agcgcatcta
     2161 cggcacggct ttcttcacgc ccgaagaact cgacgcgtgg atcaagcagc gcgaagaagc
     2221 cgagaagcgc gatcatcgcc gtctcggacg cgaactcgat ctgttctcga ttcaggaaga
     2281 ctacggccag ggactgatct tctggcaccc gaagggcggc gcgattcgca aggagatgga
     2341 agactacctg cgcgaggaat tgtcgcttcg tggctacggg ctcgtcttca cgccgcacat
     2401 cgccaaacgc gagttgtggt tcacgagcgg acatgaaatc aattacgtcg attccatgtt
     2461 ctcgccgatg gaattcgagg ggcaggaatt tcgcatcaag ccgatgaact gcccgtttca
     2521 catcggtatc tacaagtccg cgcagcgttc ctacagggat ctgccgctgc gctacgcgga
     2581 gttcggaacg tgttaccgcg ctgagctttc gggcgcgttg cacggcctga tacgcgcgcg
     2641 cgggtttacg caggacgatg cgcacatctt ctgcacgccg gaaacggtgc gcggcgagat
     2701 cgtcagttgt atcgacttcg ccttcaacgt ctacgaagcg tttggcttca aggattacaa
     2761 agtcgaactc tcggttcgcg gtgacgacca tagcctgttt ctcggtgcgg atgatcagtg
     2821 ggaaagtgcg gaagccgctc tggtcgacgc tttgaacagc cgcgggattc cgtaccaacg
     2881 gatcgaaggc gaagcggcat tttacgggcc gaagatcgat attcgcgtcg aggacgcgat
     2941 cggacgcgcg tggcagttga cgacggtgca gtttgacttc aatttgccgg agcgttttca
     3001 gctcgagtac atcggcgaag acaacaagcc gcaccggccg atcatgattc accgggcgct
     3061 gtttggatcg atggaacgtt tcttcggggt gttaatcgaa cactacgccg gagcgttccc
     3121 gatgtggctg gcgccggtgc aagttgcagt gctgccgatc acggaccgga tcaacgacta
     3181 cgcagaagaa gtggcgcgcg atctgcgcgt cgcgggcttc cgagtcgaat cgaacttgcg
     3241 aagcgaaaaa ataggcgcga agattcgcga cgcacaatta cagaaagtgc cgttcatgct
     3301 cgtgctcggc gatcgtgaga tggagcagcg agtggtggca gttcgtgagc gtgcaaaggg
     3361 cgacatcggc gcgatgtcga tcgaagaatt caaagagatg gcgcgcaagt tagttgaaac
     3421 gcgcgcgttg acaaacaaca gtcaaaccca ggaggtgcag caatagctac aggctttcgc
     3481 ggtcgcggac agcgtcctga taaccggcgt ttacccccgg ttcgcattaa cgagagaatt
     3541 cgcgtacctg aagtacgcgt gattggcgat gaaggagaac aactgggcgt catggatgtg
     3601 cgcgatgcga tccgtgctgc ccgcgagaaa ggattggacc tcgtcgaggt tgctccgaac
     3661 gccgatcccc ctgtttgccg gattatcgac tttggcaaat accagtacga agccaagaag
     3721 aaggcaaacg aggcgaagaa gaagcaggtc acgatcactg ttaaggaagt gaagtttcgt
     3781 cccggcaccg acgatcacga ttacaactac cgcatgaagc atgctcgcga gtggttgcag
     3841 gacggggaca aagtgaaagc gacgatctgg tttcgcggac gcgagatgac gcaccgcgag
     3901 ttaggcgcgc ggatcctcga aaaactggag caggatctgg cggacgtcgg cgaagtcgag
     3961 acgcgcccaa agatggaagg gaaccagatg ttcatcatcc tgggaccgaa gagacacaag
     4021 agtggagggg ccggcggaac gaaggaaacg tctc
//
LOCUS       DASWTX010001441         5518 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_151379, whole genome shotgun sequence.
ACCESSION   DASWTX010001441 DASWTX010000000
VERSION     DASWTX010001441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5518
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151379"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(124..1965)
                     /locus_tag="VGD38_21920"
     CDS             complement(124..1965)
                     /locus_tag="VGD38_21920"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5939 domain-containing protein"
                     /protein_id="HEY0730759.1"
                     /translation="MSFRELHKRWEFDLKSSPERLWPFIADTNRFNRDTGVPEIEIDA
                     AHKPQRNARRKVRLSMYGLPVEWEEQPFEWVKPFRFGIERVYSKGPLSRLRVLAELTP
                     KDGGGTHLIYQLWSTPRNLPGAVAIGLQVNFVVSRRFREAIKKYDAAAVEGAKNEASQ
                     SNVSQSSFDMARLESLRQKLVADLEQAELPPEKRALADRLSDFLQHADDLAVTRIRPY
                     KLADDWGAPRRDVLEICLRATRVGLLDFQWDLLCPLCRGPQESGRSLKDINAHVHCAG
                     CQIDFTVNFDRYVELTFRPNPAVRRVNVFAFCIGSPQMTPHVVAQQLLPASEERVLNL
                     PLESGSYRLRALEVPGSLDVTVSPEGATSAQVVVSRDGWNGDLLNVAERFTLELRNDT
                     DAEQLVMLERMAWNDQATTAAEVTALQMFRDLFASEALRPGEQISVGTLTVLFTDLRD
                     STRLYREIGDATAFGRVMGHFDVLRKAIAEHDGAVVKTIGDAVMGVFRCAADGLAAML
                     EVQRALAQPSDGTMPLQLKAGLHTGPCIAVTLNDRLDYFGSTVNLAARLEGLSTGSDV
                     IISRTVYEDAQVRELLDAKGLTATEFDMSLKGFDDERFSLWRVSEPS"
     gene            complement(1990..2511)
                     /locus_tag="VGD38_21925"
     CDS             complement(1990..2511)
                     /locus_tag="VGD38_21925"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit I"
                     /protein_id="HEY0730760.1"
                     /translation="MSIISDVIESTKAIIQGMGVTLSYIPKRKWTVQYPDDPVTLQPR
                     YRGQHLLHVDELGREKCVACYLCAAACPSECIYIVAADDPRPPEERIGVDERYATVYN
                     IDYGRCIFCGYCVEACPKDAITHGYNFELSVYSRADLLKTKDDLLITKQLQSKNYRVA
                     LSHEDVDSEYKEV"
     gene            complement(2533..3099)
                     /locus_tag="VGD38_21930"
     CDS             complement(2533..3099)
                     /locus_tag="VGD38_21930"
                     /inference="COORDINATES: protein motif:HMM:NF025198.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4190 domain-containing protein"
                     /protein_id="HEY0730761.1"
                     /translation="MKYCPQCNRQYTEPWLTFCSDDGTMLIEELSPPVDPNWNPVIRE
                     PEYKPPPSEQQTQWLPREQPPMSGGWVAPDERPPMQSPVWQSPRQAPPWQPPPPPSHP
                     VKQQSNALATASMVTGLLGLVFGCFGPLPGVIAVILGWMALQQINKSPQTVGGKPLAI
                     IGLVTGGLTIFFYGLLLLWFFTGAFGSF"
     gene            complement(3122..3538)
                     /gene="ndk"
                     /locus_tag="VGD38_21935"
     CDS             complement(3122..3538)
                     /gene="ndk"
                     /locus_tag="VGD38_21935"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: protein motif:HMM:NF001908.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEY0730762.1"
                     /translation="MTNLTFGIVKPDAVRAGHTGSIIQRILDDGFKIRGLKLIHMTQR
                     QAEGFYAVHRERPFFSGLVEFMSSGPSVVMALEKENAVKSWRDLMGATDPAKADEGTL
                     RKQFGGSVGENAVHGSDSDENAAIEISYFFSRLELV"
     gene            complement(3547..4413)
                     /gene="sucD"
                     /locus_tag="VGD38_21940"
     CDS             complement(3547..4413)
                     /gene="sucD"
                     /locus_tag="VGD38_21940"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018287377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEY0730763.1"
                     /translation="MSVLVDKSTRLIVQGITGKEGTFHTKQMVEYGTNVVGGVTPGKG
                     GTTHEGIPVFNSVSDAVKEAGANASVIYVPPSFAADAIMEAADAGIPVVVCITEGIPT
                     LDMVKVKEYLRDKPTRLIGPNCPGIISPGKCKIGIMPGHIHREGNIGVVSRSGTLTYE
                     AVGQLTALGLGQSSAIGIGGDPIVGTTHVDALELFQADPETTGIVMIGEIGGTAEEDA
                     AAYAKEHVTKPIVAFIAGQTAPPGRRMGHAGAIIAGGKGTAAEKMKALEAAGIHVVKS
                     PADIGTAMKEAL"
     gene            complement(4506..4862)
                     /locus_tag="VGD38_21945"
     CDS             complement(4506..4862)
                     /locus_tag="VGD38_21945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730764.1"
                     /translation="MDLQLETNTEASSVATQAYIAAEHIASFNPAAMLLVAVSAGVVI
                     AAAAMGTPTFRLLGIIPAIASIRIFFVVARWSRVYGSYQFEDADFIAARRTVRRSLWL
                     WRAAIVTQILGVFVPV"
     gene            complement(4887..>5518)
                     /locus_tag="VGD38_21950"
     CDS             complement(4887..>5518)
                     /locus_tag="VGD38_21950"
                     /inference="COORDINATES: protein motif:HMM:NF022449.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase RNA specificity
                     domain-containing protein"
                     /protein_id="HEY0730765.1"
                     /translation="VYLIRELEDEKAIPVLPVSVDSPMAAAATAAYANRKEEHDEEYA
                     SILTQKRHPLRTHSMVTATSREESKKLNAAKGARVIISASGMMTGGRVLHHALRMVSD
                     PEATIVFVGYQAAGTLGRRILDGEPEVKILKQWLPVRCRVAKIGGFSAHADYAEVLRW
                     LEGMQTSIPSNTFPTHGEPEAANAMAGHIKERFGWNVHVPQYGERYELV"
BASE COUNT         1116 a         1638 c         1573 g         1191 t
ORIGIN      
        1 acgtgccctg aatcgcgaca aactcgcctt cattgatctc gagcgagacg ttgtcgaggg
       61 ccgtcacact gttcgtgccc atctgataaa ttttggaaac ttcccgggcc gccaacatga
      121 cgctcatgac ggctcactga ctctccatag agaaaacctc tcgtcgtcaa aacccttcag
      181 ggacatatca aactccgttg cagttaaacc tttcgcatcg agcaactcac gcacttgcgc
      241 gtcttcataa accgtgcgcg agattatcac gtcgctgcct gtcgatagtc cttcgagacg
      301 cgccgcgaga ttcaccgtcg agccgaagta atcgagccga tcgttcagcg tcaccgcgat
      361 gcatggacca gtgtgcaagc cggccttcaa ctgcaacggc atggttccat cgctcggttg
      421 cgcgagcgcg cgttgcactt cgagcattgc cgcaagaccg tcggcggcac aacgaaagac
      481 gcccatcacc gcgtcgccga tcgtcttcac cactgcgccg tcgtgctcgg cgatggcctt
      541 ccgcagtacg tcgaaatggc ccatcacgcg gccgaacgca gtcgcgtcgc caatctcgcg
      601 atagagcctg gttgagtcgc gcagatcggt gaacagcacc gtcagcgttc caaccgagat
      661 ctgctcgccc gggcgcaacg cctccgacgc aaacagatcg cgaaacattt gcagcgctgt
      721 aacttccgcc gcggtcgtcg cctgatcgtt ccacgccata cgttcgagca tcactaactg
      781 ttcggcgtcg gtgtcgttgc gcagctcgag cgtgaaccgc tcggcgacgt tcaacagatc
      841 gccgttccaa ccatcacgcg aaacaacgac ctgcgccgac gttgcgccct caggtgaaac
      901 agtgacgtcc agcgagccgg gaacctccag cgcgcgcaaa cgataactgc cgctttcgag
      961 cggcaagttc aacacgcgct cttcgcttgc cggaagcagt tgctgcgcca cgacgtgcgg
     1021 tgtcatttgc ggactgccga tgcaaaacgc gaacacgttg acgcgccgca ccgcgggatt
     1081 cggacgaaac gtcagttcga cgtagcgatc gaagttaacc gtgaaatcga tctggcaacc
     1141 cgcgcaatga acgtgagcgt tgatgtcttt taacgaacgg cctgattcct gtggaccacg
     1201 acaaagcgga cagagcaggt cccactgaaa gtcgagcaac ccgactcgtg tcgcacgcaa
     1261 acaaatctcg agcacgtcgc gccgcggtgc gccccaatca tccgcgagct tgtacggacg
     1321 aatgcgcgtg acggcgagat cgtcggcgtg ttggagaaaa tcacttaacc gatccgcgag
     1381 cgcgcgtttc tccggcggca actccgcctg ttcgagatcc gcgacgagct tttgccgcaa
     1441 cgattcgagc cgcgccatat cgaatgacga ctgcgaaaca ttcgactgac tcgcctcgtt
     1501 cttcgcgcct tcgacagcgg ccgcatcata ctttttgatc gcctcgcgaa aacgccgcga
     1561 cacgacgaag ttaacctgaa gcccgatcgc cactgcgccc ggaagatttc gcggcgtgga
     1621 ccagagttga taaatgaggt gcgtgccgcc gccgtccttt ggcgtcaact ccgccagcac
     1681 gcgcaggcgc gacagtggtc ctttgctgta aacgcgttcg atgccaaaac gaaacggctt
     1741 gacccattcg aatggttgtt cttcccattc gacgggcaag ccgtacatcg agagccgtac
     1801 tttgcggcgc gcgttgcgct gtggtttgtg agccgcgtcg atctctattt cgggaacgcc
     1861 ggtgtcgcga ttgaaacggt tggtgtcagc aatgaacggc caaagtctct ccggactcga
     1921 tttgagatca aactcccatc gtttatgaag ctcacgaaaa gacatgccat tggattataa
     1981 cgaagtggat cagacttctt tgtattctga atccacatcc tcatgcgaga gcgcgacgcg
     2041 gtagttcttc gattgcagct gcttggtgat cagcagatca tctttcgtct tgaggagatc
     2101 cgcgcggctg taaacagaga gctcaaaatt gtaaccgtgc gtgatcgcgt ctttcggaca
     2161 cgcttccacg cagtaaccgc aaaagatgca acgcccgtaa tcgatgttgt agacggtggc
     2221 gtaacgctcg tcgactccga ttcgctcttc cggtggacgc gggtcgtcgg ccgcgacgat
     2281 gtaaatgcac tctgaaggac aggcagcggc gcaaagataa caagcgacac acttctcacg
     2341 gccgagttcg tcgacgtgca acaaatgctg gccgcggtag cgcggctgaa gcgtcaccgg
     2401 atcatccggg tactgcaccg tccacttgcg tttgggaatg taagacagcg tcacccccat
     2461 tccctggatg atggctttag tcgattcgat aacgtcggaa atgattgaca tgtgttcagt
     2521 gtaatcgtta tgtcaaaaac tcccaaaggc gcccgtgaaa aaccaaagca ggagcagtcc
     2581 gtagaagaag atcgtcaatc ccccggtcac aagaccgatg atggccagcg gttttccgcc
     2641 cactgtttgc ggggatttgt tgatctgctg cagcgccatc cagcccagga tgactgctat
     2701 gactccgggt aacggtccga aacaaccgaa aaccaatccg agcaaacccg tcaccatgga
     2761 cgcagtcgcc agcgcgttac tctgctgttt gacggggtgc gatggcggcg gcggtggttg
     2821 ccatggcggc gcctgacgcg gcgattgcca caccggcgac tgcattggcg gccgctcatc
     2881 cggcgcgacc caaccgcccg acatcggcgg ctgctcgcgc ggcagccact gtgtttgttg
     2941 ttccgacgga ggcggtttgt attccggctc gcggatgacg ggattccagt tcggatccac
     3001 cggcggcgac agctcttcga tcagcatggt gccgtcgtcc gagcagaacg tgagccaggg
     3061 ttccgtgtac tgtcgattgc actgcggaca atacttcatc tgcgagactt catctgcggt
     3121 gtcagaccag ttcgagacgg ctgaagaaat acgagatttc gatcgcggcg ttttcgtcgg
     3181 agtcggagcc gtgtacggcg ttctcgccga cggaaccgcc aaactgtttt ctgagtgtgc
     3241 cctcgtcggc cttcgccgga tcggtggcgc ccatcagatc gcgccagctt ttaactgcgt
     3301 tctctttttc gagcgccatc acgactgatg gaccactcga catgaactcg acgagtccac
     3361 tgaagaaagg ccgctcgcga tggacggcgt agaagccttc cgcttgccgt tgcgtcatgt
     3421 gaatgagttt taagccgcgg atcttgaaac catcgtcgag aatccgttga atgattgagc
     3481 ctgtgtgtcc tgctcgaact gcgtcgggtt ttacgatacc gaaagttaag ttggtcatgt
     3541 ttgtgtttag agtgcttcct tcattgccgt gccgatatct gccggcgatt tgacgacgtg
     3601 aattcccgcg gcttccaacg ccttcatctt ctccgcggcg gttcctttgc cgccggcgat
     3661 gatggcgccc gcgtggccca tgcgccgtcc cggcggcgct gtctggcccg ctatgaacgc
     3721 cacgatgggt tttgtcacgt gctccttcgc ataggcggcc gcatcttctt cagcggtgcc
     3781 gccgatctcg ccaatcatta cgatgccggt tgtttccgga tcggcctgga aaagttccag
     3841 tgcgtcgacg tgtgttgtgc cgacgatcgg atcgccgccg atgccgatcg cggacgattg
     3901 gcccaggccg agtgccgtta gttggcccac cgcttcgtaa gtcagcgtgc ccgaacgcga
     3961 gacgacgccg atgttgcctt cacgatgtat gtgaccgggc atgattccga tcttgcattt
     4021 gccgggcgag atgatgcccg gacagtttgg accaatcagg cgcgtcggtt tgtcgcgcaa
     4081 gtattccttc actttcacca tgtcgagcgt cggaatgcct tccgtgatgc agaccacgac
     4141 cgggatgccg gcgtccgctg cttccatgat cgcgtcggct gcgaatgaag gcggcacgta
     4201 gatgacggag gcatttgcgc ctgcttcctt aaccgcgtcg gacaccgaat tgaaaacggg
     4261 aatgccttcg tgtgtggttc cgcctttgcc gggcgtcaca ccgccgacga cattggttcc
     4321 atactcgacc atctgcttgg tatgaaacgt tccctctttt ccggtaatac cctgcacgat
     4381 gaggcgcgta gatttatcga ccagaacgct caatgatgaa tgctccttga attttcgggc
     4441 ttagttcaaa aggcggagta tagcaacgga atctgtggag accaaaatca ggctttgcgg
     4501 ggttgttaga ccgggacaaa cacgccgagg atttgcgtga ctatcgccgc gcgccacagc
     4561 cacagcgatc gcctgactgt gcgccgcgcc gcaatgaagt ctgcgtcttc aaactggtat
     4621 gagccgtaca cgcgagacca tctggcaaca acaaagaaaa tcctgatcga ggcgatcgcg
     4681 ggaatgatgc ccagcaggcg aaaagtcggt gtgcccatag ccgccgccgc tatgacaaca
     4741 cctgccgaca ccgcgaccaa aagcatcgct gccgggttga agctcgcgat gtgctccgcc
     4801 gcgatgtacg cctgcgtggc gactgaactg gcttcggtat tggtctctag ctgaagatcc
     4861 ataccaaccg tttctactga ggagcgctac acgagttcgt agcgctcgcc gtattgcggg
     4921 acgtggacgt tccagccgaa gcgttccttg atatgaccgg ccatggcgtt tgccgcttcg
     4981 ggttcgccgt gagtgggaaa cgtgttgctc gggatgctcg tctgcattcc ttcgagccaa
     5041 cgcagcactt ctgcatagtc tgcatgggcg gagaaaccgc cgatcttcgc gacgcggcaa
     5101 cggaccggga gccactgttt caatattttt acttccggtt cgccgtcgag tatgcggcgc
     5161 ccgagcgttc ccgctgcttg gtaaccaaca aagacgatcg tcgcttccgg atcggaaacc
     5221 atgcgcaacg cgtgatgcaa cacgcggccg ccggtcatca ttcccgacgc gctgatgatc
     5281 acacgcgcgc ctttcgcggc gttcagtttc ttcgactctt cacgcgaggt tgcggtgacc
     5341 attgagtggg tgcgcaacgg atgccgcttc tgcgtcagga tgctggcgta ttcctcgtcg
     5401 tgctcttctt tgcgattagc gtaggctgcg gttgcggcag cggccattgg cgagtcgacg
     5461 ctgaccggta agacggggat cgctttctcg tcttcgagct cgcgaatgag atagacga
//
LOCUS       DASWTX010001442         1807 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U3587
            k141_151570, whole genome shotgun sequence.
ACCESSION   DASWTX010001442 DASWTX010000000
VERSION     DASWTX010001442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959400
            Sequence Read Archive: SRR11051946
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1807)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/13/2024 03:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,351
            CDSs (with protein)               :: 4,351
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151570"
                     /isolate="SMAG_U3587"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="China"
                     /lat_lon="28.68 N 121.43 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(243..980)
                     /gene="recO"
                     /locus_tag="VGD38_21955"
     CDS             complement(243..980)
                     /gene="recO"
                     /locus_tag="VGD38_21955"
                     /inference="COORDINATES: protein motif:HMM:TIGR00613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HEY0730766.1"
                     /translation="MAIFETEALVLRTYNLAEADKIVVCLSRSAGLIRGVAKGCRKLK
                     NRFGASLEPFTLINLTYFEKENQELVSFSQTEILRSRFNLSGNASILTGFSYMGDLLI
                     DFSPPHQANDNLYRMALACFEAASQTPEDLDSVLRYFEVWLLKIEGFLPDLKACANCH
                     RTFSDETVYLGNDLSLRCAECSNSRGGAISKRLHSHLRTTEKLPPAKFAEESREVANT
                     TKKEMAELTFQLIGRVLERQPRIKPAG"
     gene            complement(984..1154)
                     /locus_tag="VGD38_21960"
     CDS             complement(984..1154)
                     /locus_tag="VGD38_21960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY0730767.1"
                     /translation="MRHFLVMCLFAAMASVVFGAMAKDNARERWLYGLKVFAEFVVIG
                     LVLAWILYFIPW"
     gene            complement(1151..1585)
                     /locus_tag="VGD38_21965"
     CDS             complement(1151..1585)
                     /locus_tag="VGD38_21965"
                     /inference="COORDINATES: protein motif:HMM:NF042755.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6677 family protein"
                     /protein_id="HEY0730768.1"
                     /translation="MVKSERLQAEHVEPTPSSAWAIGALAWFIPGVGHLLLKKFGRAA
                     LMGGVVWFCFFVGLAMGGHMFDLTTGQGSSVWLQVPPMIANLGSGALYLVCWLLDIGF
                     ADDPVQAARATYEYGNTFLLIAGLLNYLTMLDAFDIAAGRRS"
BASE COUNT          459 a          537 c          458 g          353 t
ORIGIN      
        1 gcgccgcaag cgggatcgag aaaacgagca cgcccggcaa cagtgtcact ccgagctccg
       61 ccagcaacga aaccggcagc tcggtgtaaa gcagcacctc agtaagacgg cttgcctgtt
      121 gggcaaacag caccgcgctc aacatcaaca gcgaaaggac gatgtacggc atcatcgcgc
      181 cgaagatgta gcgcgggatc agtaaagaag tagatttaaa gtgacgcttt agcagttgtg
      241 tctcaccctg ctggttttat tctcggctgg cgctcgagca cgcgcccgat cagttgaaac
      301 gtcagctcag ccatctcttt cttcgtcgtg ttcgcgactt ccctcgactc ttccgcgaac
      361 ttcgccggcg gcaatttctc tgtcgtcctc agatgcgaat gcagacgttt cgagatcgcg
      421 ccgccgcggc tgttgctgca ctcagcacaa cgaagcgaca ggtcgttgcc caagtagaca
      481 gtctcatcgc tgaacgttcg atgacaattc gcacacgcct tcaagtcagg caggaaccct
      541 tcgatcttca acagccacac ttcaaaatac cgcagcaccg aatccaggtc ttccggcgtc
      601 tgcgacgctg cttcaaaaca cgcgagcgcc atccggtaaa gattgtcgtt tgcctggtgc
      661 ggcggtgaaa agtcgatcag caggtcgccc atgtaagaga agccggtgag aatcgaagcg
      721 tttcccgaaa ggttaaagcg agatctcagg atttcagtct ggctgaacga gacgagttcc
      781 tggttttcct tctcgaaata cgtgaggttg atcagcgtga aaggttcgag cgaagcgccg
      841 aagcgattct tcaacttgcg gcaacccttg gcgacgccgc ggatcaatcc agccgaacgg
      901 ctgaggcaca cgacaatctt gtcagcttct gccagattgt acgtgcgcag gaccagggcc
      961 tcggtctcaa atatggccac acatcaccac ggaatgaagt agaggatcca ggccagcacg
     1021 aggccgatga cgacaaactc ggcgaacacc ttcaatccgt aaagccaacg ttcgcgcgca
     1081 ttatcttttg ccatcgcgcc gaacacgacg gaagccatcg cagcgaacag gcacatcacg
     1141 aggaaatgtc tcacgagcgc ctccctgccg cgatatcaaa cgcatcgagc atcgttaagt
     1201 aattcaaaag acccgcaatt aaaagaaaag tgttgccgta ttcgtaagtc gctcgtgctg
     1261 cctgcaccgg atcgtcggcg aaaccgatgt cgagcaacca gcacacgagg taaagcgcac
     1321 cgctgccgag attcgcgatc atcggcggca cttgcagcca gactgacgaa ccctgtccgg
     1381 tcgtgagatc gaacatgtgc ccgcccatcg ccaggcccac aaagaagcag aaccaaacga
     1441 caccacccat caacgcggcg cggccaaact tcttgagcag caagtggccg acgcccggaa
     1501 tgaaccaggc aagagctccg atggcccacg ccgagctggg tgtcggctcg acgtgctcgg
     1561 cttgtaaacg ttccgactta accaaaacta tgcctccaac actatgattc ccgttaacct
     1621 tttaccttaa agaaagctgt cctatcaaac tcaagccccg cgttttgagt tcaagcttta
     1681 gcttgtcctt gaagagcagc ctgaaggctg aactcaaaac gaggaacacc tcatctcaaa
     1741 ctttagccgt cggcgtgacg acgtctcacg atttacctta gctattcgta gatcaaaaac
     1801 gactctc
//
